Index of /pp/RNA-seq~HISAT2-StringTie-DEGanalysis/contents

Icon  Name                                                                                             Last modified      Size  Description
[PARENTDIR] Parent Directory - [TXT] 0_result.html 2021-11-19 05:17 9.8K [TXT] DESeq2.genes.count_table.a.b.txt 2021-11-19 05:17 47 [TXT] DESeq2.gos.count_table.a.b.txt 2021-11-19 05:17 47 [TXT] DESeq2.isoforms.count_table.a.b.txt 2021-11-19 05:17 47 [IMG] MDS.log10.png 2021-11-19 01:34 21K [IMG] MDS.png 2021-11-19 01:34 24K [IMG] MDSdetail.log10.png 2021-11-19 01:34 50K [IMG] MDSdetail.png 2021-11-19 01:34 54K [   ] SRR1363434_10k_1.fastq.bam 2021-11-19 01:30 2.0M [   ] SRR1363434_10k_1.fastq.bam.bai 2021-11-19 01:30 16K [   ] SRR1363435_10k_1.fastq.bam 2021-11-19 01:29 2.0M [   ] SRR1363435_10k_1.fastq.bam.bai 2021-11-19 01:29 16K [   ] SRR1363436_10k_1.fastq.bam 2021-11-19 01:29 1.9M [   ] SRR1363436_10k_1.fastq.bam.bai 2021-11-19 01:29 18K [   ] SRR1363437_10k_1.fastq.bam 2021-11-19 01:30 1.7M [   ] SRR1363437_10k_1.fastq.bam.bai 2021-11-19 01:30 16K [   ] SRR1363438_10k_1.fastq.bam 2021-11-19 01:30 1.6M [   ] SRR1363438_10k_1.fastq.bam.bai 2021-11-19 01:30 16K [   ] SRR1363439_10k_1.fastq.bam 2021-11-19 01:30 1.6M [   ] SRR1363439_10k_1.fastq.bam.bai 2021-11-19 01:30 14K [TXT] Trinotate.output.txt 2021-11-19 05:16 19M [   ] Trinotate.xls 2021-11-19 05:14 18M [   ] Trinotate.xls3 2021-11-19 05:16 19M [   ] Trinotate.xls3.gene 2021-11-19 05:17 19M [   ] Trinotate.xls3.gene.cnt 2021-11-19 05:17 19M [   ] Trinotate.xls3.gene.cnt.temp 2021-11-19 05:17 19M [   ] Trinotate.xls3.go 2021-11-19 05:17 398K [   ] Trinotate.xls3.go.cnt 2021-11-19 05:17 579K [   ] Trinotate.xls3.go.cnt.temp 2021-11-19 05:17 579K [   ] Trinotate.xls3.isoform.cnt 2021-11-19 05:17 19M [   ] Trinotate.xls3.isoform.cnt.temp 2021-11-19 05:17 19M [   ] TrinotatePFAM.out 2021-11-19 05:02 8.3M [TXT] ballgown.genes.count_table.a.b.txt 2021-11-19 05:17 4.8K [TXT] ballgown.isoforms.count_table.a.b.txt 2021-11-19 05:17 5.2K [   ] cuffdiff.a.b.sh 2021-11-19 05:24 2.3K [TXT] cuffdiff.genes.count_table.ren.a.b.txt 2021-11-19 05:24 1.1K [TXT] cuffdiff.isoforms.count_table.ren.a.b.txt 2021-11-19 05:24 1.2K [TXT] edgeR.genes.count_table.a.b.txt 2021-11-19 05:17 26 [TXT] edgeR.gos.count_table.a.b.txt 2021-11-19 05:17 26 [TXT] edgeR.isoforms.count_table.a.b.txt 2021-11-19 05:17 26 [   ] fin_status 2021-11-19 05:24 2 [TXT] genes.ballgown.txt 2021-11-19 01:34 206K [   ] genes.count_table 2021-11-19 01:34 189K [TXT] genes.count_table.a.b.txt 2021-11-19 05:17 189K [TXT] genes.count_table.a.b.txt.DESeq2.genes.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K [IMG] genes.count_table.a.b.txt.DESeq2.genes.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 41K [IMG] genes.count_table.a.b.txt.DESeq2.genes.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 45K [TXT] genes.count_table.a.b.txt.ballgown.genes.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K [IMG] genes.count_table.a.b.txt.ballgown.genes.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 45K [IMG] genes.count_table.a.b.txt.ballgown.genes.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 47K [TXT] genes.count_table.a.b.txt.edgeR.genes.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K [IMG] genes.count_table.a.b.txt.edgeR.genes.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 41K [IMG] genes.count_table.a.b.txt.edgeR.genes.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 45K [   ] genes.count_table.ren 2021-11-19 05:17 189K [TXT] genes.count_table.ren.a.b.txt.2.cuffdiff.genes.count_table.ren.a.b.txt.id.R 2021-11-19 05:24 5.2K [IMG] genes.count_table.ren.a.b.txt.cuffdiff.genes.count_table.ren.a.b.txt.id.scatter.normal.png 2021-11-19 05:24 22K [IMG] genes.count_table.ren.a.b.txt.cuffdiff.genes.count_table.ren.a.b.txt.id.scatter.png 2021-11-19 05:24 33K [   ] genes.fpkm_table 2021-11-19 01:34 206K [   ] genes.fpkm_table.ren 2021-11-19 05:17 206K [   ] gos.count_table 2021-11-19 05:17 245K [TXT] gos.count_table.a.b.txt 2021-11-19 05:17 245K [TXT] gos.count_table.a.b.txt.DESeq2.gos.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K [IMG] gos.count_table.a.b.txt.DESeq2.gos.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 58K [IMG] gos.count_table.a.b.txt.DESeq2.gos.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 67K [TXT] gos.count_table.a.b.txt.edgeR.gos.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K [IMG] gos.count_table.a.b.txt.edgeR.gos.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 58K [IMG] gos.count_table.a.b.txt.edgeR.gos.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 67K [   ] gos.count_table.ren 2021-11-19 05:17 245K [   ] hisat2_index.1.ht2 2021-11-19 01:29 11M [   ] hisat2_index.2.ht2 2021-11-19 01:29 2.9M [   ] hisat2_index.3.ht2 2021-11-19 01:29 161 [   ] hisat2_index.4.ht2 2021-11-19 01:29 2.9M [   ] hisat2_index.5.ht2 2021-11-19 01:29 7.2M [   ] hisat2_index.6.ht2 2021-11-19 01:29 2.9M [   ] hisat2_index.7.ht2 2021-11-19 01:29 127K [   ] hisat2_index.8.ht2 2021-11-19 01:29 31K [IMG] histo.count.png 2021-11-19 01:34 54K [TXT] histo.sample.input.txt 2021-11-19 01:34 163 [TXT] histo.temp.sample.txt 2021-11-19 01:34 163 [DIR] input.ballgown.tar.gz/ 2021-11-19 01:34 - [DIR] input.ballgown/ 2021-11-19 01:34 - [DIR] input_1/ 2020-01-16 11:46 - [DIR] input_2/ 2020-01-16 11:52 - [DIR] input_3/ 2020-01-16 11:48 - [TXT] isoforms.ballgown.txt 2021-11-19 01:34 699K [   ] isoforms.count_table 2021-11-19 01:34 223K [TXT] isoforms.count_table.a.b.txt 2021-11-19 05:17 223K [TXT] isoforms.count_table.a.b.txt.DESeq2.isoforms.count_table.a.b.txt.id.R 2021-11-19 05:17 5.2K [IMG] isoforms.count_table.a.b.txt.DESeq2.isoforms.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 41K [IMG] isoforms.count_table.a.b.txt.DESeq2.isoforms.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 46K [TXT] isoforms.count_table.a.b.txt.ballgown.isoforms.count_table.a.b.txt.id.R 2021-11-19 05:17 5.2K [IMG] isoforms.count_table.a.b.txt.ballgown.isoforms.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 45K [IMG] isoforms.count_table.a.b.txt.ballgown.isoforms.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 47K [TXT] isoforms.count_table.a.b.txt.edgeR.isoforms.count_table.a.b.txt.id.R 2021-11-19 05:17 5.2K [IMG] isoforms.count_table.a.b.txt.edgeR.isoforms.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 41K [IMG] isoforms.count_table.a.b.txt.edgeR.isoforms.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 46K [   ] isoforms.count_table.ren 2021-11-19 05:17 223K [TXT] isoforms.count_table.ren.a.b.txt.2.cuffdiff.isoforms.count_table.ren.a.b.txt.id.R 2021-11-19 05:24 5.2K [IMG] isoforms.count_table.ren.a.b.txt.cuffdiff.isoforms.count_table.ren.a.b.txt.id.scatter.normal.png 2021-11-19 05:24 22K [IMG] isoforms.count_table.ren.a.b.txt.cuffdiff.isoforms.count_table.ren.a.b.txt.id.scatter.png 2021-11-19 05:24 33K [   ] isoforms.fpkm_table 2021-11-19 01:34 237K [   ] isoforms.fpkm_table.ren 2021-11-19 05:17 237K [TXT] log-DESeq2.a.b.gene.txt 2021-11-19 05:17 18K [TXT] log-DESeq2.a.b.go.txt 2021-11-19 05:17 17K [TXT] log-DESeq2.a.b.isoform.txt 2021-11-19 05:17 18K [TXT] log-ballgown.a.b.isoform-gene.txt 2021-11-19 05:17 29K [TXT] log-cuffdiff.a.b.isoform-gene.txt 2021-11-19 05:24 964K [TXT] log-edgeR.a.b.gene.txt 2021-11-19 05:17 15K [TXT] log-edgeR.a.b.go.txt 2021-11-19 05:17 15K [TXT] log-edgeR.a.b.isoform.txt 2021-11-19 05:17 16K [TXT] log.hisat2.SRR1363434_10k_1.fastq 2021-11-19 01:30 587 [TXT] log.hisat2.SRR1363435_10k_1.fastq 2021-11-19 01:29 585 [TXT] log.hisat2.SRR1363436_10k_1.fastq 2021-11-19 01:29 587 [TXT] log.hisat2.SRR1363437_10k_1.fastq 2021-11-19 01:30 596 [TXT] log.hisat2.SRR1363438_10k_1.fastq 2021-11-19 01:30 591 [TXT] log.hisat2.SRR1363439_10k_1.fastq 2021-11-19 01:30 593 [   ] log.prinseq.SRR1363434_10k_1.fastq 2021-11-19 01:29 864 [   ] log.prinseq.SRR1363435_10k_1.fastq 2021-11-19 01:29 885 [   ] log.prinseq.SRR1363436_10k_1.fastq 2021-11-19 01:29 878 [   ] log.prinseq.SRR1363437_10k_1.fastq 2021-11-19 01:29 865 [   ] log.prinseq.SRR1363438_10k_1.fastq 2021-11-19 01:29 865 [   ] log.prinseq.SRR1363439_10k_1.fastq 2021-11-19 01:29 864 [DIR] output.cuffdiff.a.b/ 2021-11-19 05:17 - [DIR] output.cuffnorm.forplot/ 2021-11-19 05:24 - [DIR] output.cuffnorm/ 2021-11-19 01:34 - [DIR] output.cuffquant.tar.gz/ 2021-11-19 01:34 - [DIR] output.cuffquant/ 2021-11-19 01:34 - [DIR] output.prinseq/ 2021-11-19 01:29 - [DIR] output.stringtie/ 2021-11-19 01:30 - [DIR] output_bam/ 2021-11-19 01:30 - [TXT] pfam.log 2021-11-19 05:02 41M [TXT] result.DESeq2.genes.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 677 [   ] result.DESeq2.genes.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.6K [TXT] result.DESeq2.genes.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 677 [   ] result.DESeq2.genes.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 3.6K [TXT] result.DESeq2.gos.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 220 [   ] result.DESeq2.gos.count_table.a.b.txt.a.down.b.up.txt.xlsx 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