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Parent Directory -
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fin_status 2021-11-19 05:24 2
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log-cuffdiff.a.b.isoform-gene.txt 2021-11-19 05:24 964K
result.cuffdiff.genes.count_table.ren.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:24 3.6K
result.cuffdiff.genes.count_table.ren.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:24 14K
result.cuffdiff.isoforms.count_table.ren.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:24 3.7K
result.cuffdiff.isoforms.count_table.ren.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:24 14K
result.cuffdiff.genes.count_table.ren.a.b.txt.a.down.b.up.txt 2021-11-19 05:24 1.2K
result.cuffdiff.genes.count_table.ren.a.b.txt.a.up.b.down.txt 2021-11-19 05:24 25K
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genes.count_table.ren.a.b.txt.cuffdiff.genes.count_table.ren.a.b.txt.id.scatter.normal.png 2021-11-19 05:24 22K
genes.count_table.ren.a.b.txt.cuffdiff.genes.count_table.ren.a.b.txt.id.scatter.png 2021-11-19 05:24 33K
genes.count_table.ren.a.b.txt.2.cuffdiff.genes.count_table.ren.a.b.txt.id.R 2021-11-19 05:24 5.2K
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output.cuffnorm.forplot/ 2021-11-19 05:24 -
result.cuffdiff.isoforms.count_table.ren.a.b.txt.a.down.b.up.txt 2021-11-19 05:24 1.2K
result.cuffdiff.isoforms.count_table.ren.a.b.txt.a.up.b.down.txt 2021-11-19 05:24 25K
isoforms.count_table.ren.a.b.txt.cuffdiff.isoforms.count_table.ren.a.b.txt.id.scatter.normal.png 2021-11-19 05:24 22K
isoforms.count_table.ren.a.b.txt.cuffdiff.isoforms.count_table.ren.a.b.txt.id.scatter.png 2021-11-19 05:24 33K
isoforms.count_table.ren.a.b.txt.2.cuffdiff.isoforms.count_table.ren.a.b.txt.id.R 2021-11-19 05:24 5.2K
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cuffdiff.a.b.sh 2021-11-19 05:24 2.3K
cuffdiff.genes.count_table.ren.a.b.txt 2021-11-19 05:24 1.1K
cuffdiff.isoforms.count_table.ren.a.b.txt 2021-11-19 05:24 1.2K
log-ballgown.a.b.isoform-gene.txt 2021-11-19 05:17 29K
result.ballgown.genes.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.6K
result.ballgown.genes.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 145K
result.ballgown.genes.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 677
result.ballgown.genes.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 356K
genes.count_table.a.b.txt.ballgown.genes.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 45K
genes.count_table.a.b.txt.ballgown.genes.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 47K
genes.count_table.a.b.txt.ballgown.genes.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K
log-DESeq2.a.b.go.txt 2021-11-19 05:17 17K
result.DESeq2.gos.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.3K
result.ballgown.isoforms.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.6K
log-DESeq2.a.b.isoform.txt 2021-11-19 05:17 18K
result.DESeq2.isoforms.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.6K
log-DESeq2.a.b.gene.txt 2021-11-19 05:17 18K
result.DESeq2.genes.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.6K
result.DESeq2.gos.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 3.3K
result.ballgown.isoforms.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 143K
result.DESeq2.isoforms.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 3.6K
result.DESeq2.genes.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 3.6K
result.DESeq2.gos.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 220
result.DESeq2.gos.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 220
gos.count_table.a.b.txt.DESeq2.gos.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 58K
gos.count_table.a.b.txt.DESeq2.gos.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 67K
result.ballgown.isoforms.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 699
result.ballgown.isoforms.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 351K
result.DESeq2.isoforms.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 699
result.DESeq2.isoforms.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 699
isoforms.count_table.a.b.txt.ballgown.isoforms.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 45K
isoforms.count_table.a.b.txt.DESeq2.isoforms.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 41K
isoforms.count_table.a.b.txt.ballgown.isoforms.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 47K
isoforms.count_table.a.b.txt.DESeq2.isoforms.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 46K
result.DESeq2.genes.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 677
result.DESeq2.genes.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 677
genes.count_table.a.b.txt.DESeq2.genes.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 41K
genes.count_table.a.b.txt.DESeq2.genes.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 45K
gos.count_table.a.b.txt.DESeq2.gos.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K
isoforms.count_table.a.b.txt.DESeq2.isoforms.count_table.a.b.txt.id.R 2021-11-19 05:17 5.2K
isoforms.count_table.a.b.txt.ballgown.isoforms.count_table.a.b.txt.id.R 2021-11-19 05:17 5.2K
DESeq2.gos.count_table.a.b.txt 2021-11-19 05:17 47
genes.count_table.a.b.txt.DESeq2.genes.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K
DESeq2.isoforms.count_table.a.b.txt 2021-11-19 05:17 47
ballgown.isoforms.count_table.a.b.txt 2021-11-19 05:17 5.2K
ballgown.genes.count_table.a.b.txt 2021-11-19 05:17 4.8K
DESeq2.genes.count_table.a.b.txt 2021-11-19 05:17 47
log-edgeR.a.b.go.txt 2021-11-19 05:17 15K
log-edgeR.a.b.isoform.txt 2021-11-19 05:17 16K
log-edgeR.a.b.gene.txt 2021-11-19 05:17 15K
result.edgeR.gos.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.3K
result.edgeR.isoforms.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.6K
result.edgeR.genes.count_table.a.b.txt.a.down.b.up.txt.xlsx 2021-11-19 05:17 3.6K
result.edgeR.gos.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 3.3K
result.edgeR.isoforms.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 3.6K
result.edgeR.genes.count_table.a.b.txt.a.up.b.down.txt.xlsx 2021-11-19 05:17 3.6K
result.edgeR.isoforms.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 698
result.edgeR.gos.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 219
result.edgeR.gos.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 219
result.edgeR.isoforms.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 698
isoforms.count_table.a.b.txt.edgeR.isoforms.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 41K
gos.count_table.a.b.txt.edgeR.gos.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 58K
result.edgeR.genes.count_table.a.b.txt.a.down.b.up.txt 2021-11-19 05:17 676
result.edgeR.genes.count_table.a.b.txt.a.up.b.down.txt 2021-11-19 05:17 676
isoforms.count_table.a.b.txt.edgeR.isoforms.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 46K
gos.count_table.a.b.txt.edgeR.gos.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 67K
genes.count_table.a.b.txt.edgeR.genes.count_table.a.b.txt.id.scatter.normal.png 2021-11-19 05:17 41K
genes.count_table.a.b.txt.edgeR.genes.count_table.a.b.txt.id.scatter.png 2021-11-19 05:17 45K
gos.count_table.a.b.txt.edgeR.gos.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K
isoforms.count_table.a.b.txt.edgeR.isoforms.count_table.a.b.txt.id.R 2021-11-19 05:17 5.2K
genes.count_table.a.b.txt.edgeR.genes.count_table.a.b.txt.id.R 2021-11-19 05:17 5.1K
edgeR.gos.count_table.a.b.txt 2021-11-19 05:17 26
edgeR.isoforms.count_table.a.b.txt 2021-11-19 05:17 26
edgeR.genes.count_table.a.b.txt 2021-11-19 05:17 26
output.cuffdiff.a.b/ 2021-11-19 05:17 -
run-ballgown.a.b.isoform.R 2021-11-19 05:17 1.0K
run-edgeR.a.b.isoform.R 2021-11-19 05:17 455
sample.input.a.b.txt.num 2021-11-19 05:17 163
run-edgeR.a.b.go.R 2021-11-19 05:17 445
run-edgeR.a.b.gene.R 2021-11-19 05:17 449
run-DESeq2.a.b.go.R 2021-11-19 05:17 586
run-DESeq2.a.b.isoform.R 2021-11-19 05:17 596
run-DESeq2.a.b.gene.R 2021-11-19 05:17 590
gos.count_table.a.b.txt 2021-11-19 05:17 245K
genes.count_table.a.b.txt 2021-11-19 05:17 189K
isoforms.count_table.a.b.txt 2021-11-19 05:17 223K
sample.input.a.b.txt.y 2021-11-19 05:17 69
sample.input.a.b.txt.x 2021-11-19 05:17 69
sample.input.a.b.txt 2021-11-19 05:17 163
run-DE.a.b.sh 2021-11-19 05:17 3.7K
0_result.html 2021-11-19 05:17 9.8K
run-make-deg-html.sh 2021-11-19 05:17 1.0K
result.go.xlsx 2021-11-19 05:17 349K
result.gene.xlsx 2021-11-19 05:17 7.7M
result.isoform.xlsx 2021-11-19 05:17 7.7M
Trinotate.xls3.go.cnt.temp 2021-11-19 05:17 579K
Trinotate.xls3.gene.cnt.temp 2021-11-19 05:17 19M
Trinotate.xls3.isoform.cnt.temp 2021-11-19 05:17 19M
sample.input.pair.txt 2021-11-19 05:17 4
Trinotate.xls3.go.cnt 2021-11-19 05:17 579K
gos.count_table.ren 2021-11-19 05:17 245K
Trinotate.xls3.go 2021-11-19 05:17 398K
gos.count_table 2021-11-19 05:17 245K
Trinotate.xls3.gene.cnt 2021-11-19 05:17 19M
genes.fpkm_table.ren 2021-11-19 05:17 206K
genes.count_table.ren 2021-11-19 05:17 189K
Trinotate.xls3.gene 2021-11-19 05:17 19M
transcripts.fasta.rep_isoform 2021-11-19 05:17 168K
transcripts.fasta.fai 2021-11-19 05:17 224K
Trinotate.xls3.isoform.cnt 2021-11-19 05:17 19M
isoforms.fpkm_table.ren 2021-11-19 05:17 237K
isoforms.count_table.ren 2021-11-19 05:17 223K
transcripts.fasta.transdecoder.genome.gff3 2021-11-19 05:17 2.6M
stringtie.merge.gff3 2021-11-19 05:17 872K
Trinotate.output.txt 2021-11-19 05:16 19M
Trinotate.xls3 2021-11-19 05:16 19M
Trinotate.xls 2021-11-19 05:14 18M
signalp.out 2021-11-19 05:13 17K
sigP.log 2021-11-19 05:13 573K
transcripts.fasta.rnammer.gff 2021-11-19 05:10 0
tmhmm.out 2021-11-19 05:10 0
transcripts.fasta.blastn 2021-11-19 05:10 456K
pfam.log 2021-11-19 05:02 41M
TrinotatePFAM.out 2021-11-19 05:02 8.3M
swissprot.blastp.outfmt6 2021-11-19 04:20 372K
swissprot.blastx.outfmt6 2021-11-19 03:16 415K
transcripts.fasta.transdecoder.cds 2021-11-19 01:36 8.9M
transcripts.fasta.transdecoder.pep 2021-11-19 01:36 3.4M
transcripts.fasta.transdecoder.bed 2021-11-19 01:36 781K
transcripts.fasta.transdecoder.gff3 2021-11-19 01:36 2.8M
stringtie.merge.gtf.map 2021-11-19 01:34 139K
MDS.log10.png 2021-11-19 01:34 21K
MDSdetail.log10.png 2021-11-19 01:34 50K
sampleDist.log10.png 2021-11-19 01:34 19K
run-clusterplot.log10.R 2021-11-19 01:34 1.8K
MDS.png 2021-11-19 01:34 24K
MDSdetail.png 2021-11-19 01:34 54K
sampleDist.png 2021-11-19 01:34 18K
run-clusterplot.R 2021-11-19 01:34 1.7K
histo.sample.input.txt 2021-11-19 01:34 163
histo.temp.sample.txt 2021-11-19 01:34 163
histo.count.png 2021-11-19 01:34 54K
run-make-histogram.R 2021-11-19 01:34 418
output.cuffnorm/ 2021-11-19 01:34 -
genes.fpkm_table 2021-11-19 01:34 206K
genes.count_table 2021-11-19 01:34 189K
isoforms.fpkm_table 2021-11-19 01:34 237K
isoforms.count_table 2021-11-19 01:34 223K
genes.ballgown.txt 2021-11-19 01:34 206K
isoforms.ballgown.txt 2021-11-19 01:34 699K
run-estimate-fpkm.R 2021-11-19 01:34 467
sample.input.txt 2021-11-19 01:34 163
sample.txt2 2021-11-19 01:34 160
transcripts.fasta 2021-11-19 01:34 8.5M
output.cuffquant/ 2021-11-19 01:34 -
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output.cuffquant.tar.gz/ 2021-11-19 01:34 -
input.ballgown/ 2021-11-19 01:34 -
input.ballgown.tar.gz/ 2021-11-19 01:34 -
stringtie.merge.gtf 2021-11-19 01:30 1.7M
output_bam/ 2021-11-19 01:30 -
output.stringtie/ 2021-11-19 01:30 -
SRR1363437_10k_1.fastq.bam.bai 2021-11-19 01:30 16K
SRR1363437_10k_1.fastq.bam 2021-11-19 01:30 1.7M
log.hisat2.SRR1363437_10k_1.fastq 2021-11-19 01:30 596
SRR1363434_10k_1.fastq.bam.bai 2021-11-19 01:30 16K
SRR1363434_10k_1.fastq.bam 2021-11-19 01:30 2.0M
log.hisat2.SRR1363434_10k_1.fastq 2021-11-19 01:30 587
SRR1363439_10k_1.fastq.bam.bai 2021-11-19 01:30 14K
SRR1363439_10k_1.fastq.bam 2021-11-19 01:30 1.6M
log.hisat2.SRR1363439_10k_1.fastq 2021-11-19 01:30 593
SRR1363438_10k_1.fastq.bam.bai 2021-11-19 01:30 16K
SRR1363438_10k_1.fastq.bam 2021-11-19 01:30 1.6M
log.hisat2.SRR1363438_10k_1.fastq 2021-11-19 01:30 591
SRR1363435_10k_1.fastq.bam.bai 2021-11-19 01:29 16K
SRR1363435_10k_1.fastq.bam 2021-11-19 01:29 2.0M
log.hisat2.SRR1363435_10k_1.fastq 2021-11-19 01:29 585
SRR1363436_10k_1.fastq.bam.bai 2021-11-19 01:29 18K
SRR1363436_10k_1.fastq.bam 2021-11-19 01:29 1.9M
log.hisat2.SRR1363436_10k_1.fastq 2021-11-19 01:29 587
output.prinseq/ 2021-11-19 01:29 -
log.prinseq.SRR1363437_10k_1.fastq 2021-11-19 01:29 865
log.prinseq.SRR1363439_10k_1.fastq 2021-11-19 01:29 864
log.prinseq.SRR1363438_10k_1.fastq 2021-11-19 01:29 865
log.prinseq.SRR1363436_10k_1.fastq 2021-11-19 01:29 878
log.prinseq.SRR1363435_10k_1.fastq 2021-11-19 01:29 885
log.prinseq.SRR1363434_10k_1.fastq 2021-11-19 01:29 864
hisat2_index.5.ht2 2021-11-19 01:29 7.2M
hisat2_index.6.ht2 2021-11-19 01:29 2.9M
hisat2_index.2.ht2 2021-11-19 01:29 2.9M
hisat2_index.1.ht2 2021-11-19 01:29 11M
hisat2_index.8.ht2 2021-11-19 01:29 31K
hisat2_index.7.ht2 2021-11-19 01:29 127K
hisat2_index.4.ht2 2021-11-19 01:29 2.9M
hisat2_index.3.ht2 2021-11-19 01:29 161
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input_3/ 2020-01-16 11:48 -
sample.txt 2020-01-16 11:47 161
input_1/ 2020-01-16 11:46 -