statistics~sample_distance

Plot histogram of gene expression, tree and MDS plot of sample distances

input_1:count table

input_1

input_1/isoforms.count_table

t_name	SRR1363434_1.fastq	SRR1363435_1.fastq	SRR1363436_1.fastq	SRR1363437_1.fastq	SRR1363438_1.fastq	SRR1363439_1.fastq
YAL069W_mRNA	0	0	0	0	0	0
YAL068W-A_mRNA	0	0	0	0	0	0
YAL068C_mRNA	0.272727	0	0.556474	0	0.267218	0.559504
YAL067W-A_mRNA	0	0	0	0	0	0
MSTRG.1.1	0	0	2.631579	0	0	0
YAL067C_mRNA	0	0.676768	0.201459	0.111672	0.053311	0.041526
YAL066W_mRNA	0	0	0	0	0	0
YAL065C_mRNA	0.130491	0.871153	0.494832	0	0	0
YAL064W-B_mRNA	0.132546	4.630391	0.858268	0	0	0

input_2:sample information file [optional]

Option

-c "8" -m "64"

Output

histo.count.png

sampleDist.png

MDS.png

MDSdetail.png

view all outputs