# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /yoshitake/test/post-assemble~busco_v5/busco_downloads/lineages/eukaryota_odb10/hmms/671846at2759.hmm # target sequence database: /yoshitake/test/post-assemble~busco_v5/cnv2_edited.fasta.busco/run_eukaryota_odb10/metaeuk_output/rerun_results/cnv2_edited.fasta.modified.fas # per-dom hits tabular output: /yoshitake/test/post-assemble~busco_v5/cnv2_edited.fasta.busco/run_eukaryota_odb10/hmmer_output/rerun_results/671846at2759.out # number of worker threads: 1 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 671846at2759 [M=450] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-30 98.5 14.4 1.4e-10 34.2 0.5 7.5 7 3_related_000136F:917-3916 Domain annotation for each sequence (and alignments): >> 3_related_000136F:917-3916 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.2 0.2 1.1e-05 0.0026 9 49 .. 52 92 .. 42 97 .. 0.78 2 ! 13.7 0.0 1e-06 0.00023 39 94 .. 105 176 .. 91 177 .. 0.76 3 ! 34.2 0.5 6.2e-13 1.4e-10 143 200 .. 287 354 .. 283 368 .. 0.82 4 ! 9.8 0.2 1.5e-05 0.0035 233 259 .. 439 465 .. 407 485 .. 0.76 5 ! 4.2 0.0 0.00074 0.17 268 296 .. 504 531 .. 497 569 .. 0.78 6 ! 8.5 0.1 3.8e-05 0.0088 322 393 .. 597 676 .. 592 684 .. 0.72 7 ! 20.5 0.0 8.4e-09 2e-06 393 439 .. 726 782 .. 674 788 .. 0.70 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 1.1e-05 671846at2759 9 creqveelrlleqEantWrLlrsLyssekeiekllekdsel 49 ++++ee +ll++E ntW Ll++++ s+k+ +e + l 3_related_000136F:917-3916 52 FESVSEEKELLRLEENTWALLQAVMPSRKTEPPTFEYAQDL 92 467889999*******************9988777766555 PP == domain 2 score: 13.7 bits; conditional E-value: 1e-06 671846at2759 39 iekllekdselrelqlvvdWLeetasdele.......wenTlhalk.........seklvtelDpDapiRqd 94 +++l+ ++ l+el +v +WL++ta ++ w+ T+h++ ++ lv+e+DpDa+ R d 3_related_000136F:917-3916 105 AQAILNASPVLTELIVVREWLQDTAPPPMQpeattgyWKFTKHNIMqglrtgagaRHGLVKEMDPDAVNRGD 176 5678899999**************9765443444455******997233333332579***********986 PP == domain 3 score: 34.2 bits; conditional E-value: 6.2e-13 671846at2759 143 dpnrdlWKrmcn.......kyeravygalsGnlks...vlpvcesweDalWaylkalldsrveselrs 200 +pnr+lWK++c+ +yer +y+al+ ++ ++++c++weD+lWa+++ +++++ e++ 3_related_000136F:917-3916 287 NPNRRLWKSACSraalnlaDYERVLYAALAPAPQTsliLKSACRTWEDHLWAQISIMCEEKQTMEMSR 354 79*********744444447**********999883334466*****************998877765 PP == domain 4 score: 9.8 bits; conditional E-value: 1.5e-05 671846at2759 233 slleelsehllRflaHlvLflrslgil 259 sl + + ++Rf+aHl+Lfl+ +++ 3_related_000136F:917-3916 439 SLQSTTYAPMCRFFAHLCLFLKLIDVT 465 5556667789************99874 PP == domain 5 score: 4.2 bits; conditional E-value: 0.00074 671846at2759 268 saelialYasqLpeerqvelyarfLesid 296 ++elia+Ya +L e ++v+ ya fL s++ 3_related_000136F:917-3916 504 QRELIAMYAGALGE-NAVSRYALFLVSLE 531 789*********87.89999999998876 PP == domain 6 score: 8.5 bits; conditional E-value: 3.8e-05 671846at2759 322 iraleWll.......ealkqanalireFllsgkleaakvpadsisllenaireya.llealdafeewfklynvlgwlvdk 393 +r++eW + +al+qan++ r+Fl sg+++ a+ + + + +ai e + + + +++++f++++ l+ +v+ 3_related_000136F:917-3916 597 LRSIEWTTfseatydRALEQANHICRYFLGSGRVQLAQQLLNMLPAELAAIGEPEeQATEHLHYRQFFSIWETLERIVEC 676 66667755444444479********************9888888888777776541344466778888888877777665 PP == domain 7 score: 20.5 bits; conditional E-value: 8.4e-09 671846at2759 393 kqlellRelyiPelvlllhsvlqsae.........cleLadlva.sesklyevfsks 439 + l ++R++yiPelv++lhs+l++++ l+L ++va s++klye f ++ 3_related_000136F:917-3916 726 RALIRIRQIYIPELVIRLHSTLFTSRfrfpenlklLLKLVNIVAdSRYKLYEDFFSD 782 35789******************9973333333334899*************99765 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (450 nodes) Target sequences: 234 (75706 residues searched) Passed MSV filter: 6 (0.025641); expected 4.7 (0.02) Passed bias filter: 4 (0.017094); expected 4.7 (0.02) Passed Vit filter: 1 (0.0042735); expected 0.2 (0.001) Passed Fwd filter: 1 (0.0042735); expected 0.0 (1e-05) Initial search space (Z): 234 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 1135.59 // [ok] MPtykrpdskGDLFVLFDIEMPTE 252 444544456636799***********986379*********98632222222333335899988888888888999999988876 PP >> 1:3094460-3097511 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.2 0.4 2.5e-12 5.8e-11 4 109 .. 312 415 .. 310 443 .. 0.77 2 ! 29.4 6.6 3e-10 7e-09 115 219 .. 470 609 .. 432 613 .. 0.75 Alignments for each domain: == domain 1 score: 36.2 bits; conditional E-value: 2.5e-12 687505at2759 4 dyYkiLgvsksAsekeikkayrk...lyhpdknkddeaeekfveigeayevLsdeekrkiydryGeeglkqdlFsdfrGedvevdlevtled 92 +Y++L+vs +Ase+++kkayrk +hpdk d e f+e+++ay+ L + +G ++ + + +d++ +++vtled 1:3094460-3097511 312 KFYDLLDVSPNASESDLKKAYRKkalRLHPDKGGD---PELFKEVTHAYQDLFSSLFGGG-GLFGGG-GGSSRGGPRKTKDLVHRVHVTLED 398 69********************955458****998...678*********9987643322.233333.344566888999************ PP 687505at2759 93 lynGksveveivtkqlg 109 ly+Gk++++ ++++ + 1:3094460-3097511 399 LYKGKTTKLALTRNVIC 415 *********99998775 PP == domain 2 score: 29.4 bits; conditional E-value: 3e-10 687505at2759 115 qvqCdeCpnvklvre...leveiekGakdgq..efegegees.dgeaGdlvvrikg..........dd.LynvtisleeallgfereikhLD 189 + +C++C+++k+ e lev+i+kG+k gq +f ge+++s e+Gd+v+ i++ +d L v i l al g e +ikhLD 1:3094460-3097511 470 KDRCTQCKGKKVLPEkkfLEVHIDKGMKGGQtiQFRGESDQSpGAETGDVVIVIEEkpherfkrqdNDlLIDVEIDLLTALAGGEFTIKHLD 561 568********975534489********9983368899998835689****9997522222222223436899******************* PP 687505at2759 190 ghkvkv.vkpg..........kgeGmP.......Gdlyiefevelpke 219 ++ + v ++pg +g+GmP G++y++ +v++p++ 1:3094460-3097511 562 DRALLVkIEPGevikhelkviHGQGMPshrhhepGNMYVKLNVVFPDS 609 *98654223331111113333699*9555555559***********86 PP >> 6:3249487-3250761 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.3 0.8 4.2e-15 9.9e-14 3 57 .. 2 60 .. 1 66 [. 0.86 2 ! 19.5 0.3 3.1e-07 7.3e-06 82 221 .. 69 232 .. 62 236 .. 0.62 Alignments for each domain: == domain 1 score: 45.3 bits; conditional E-value: 4.2e-15 687505at2759 3 kdyYkiLgvsksAsekeikkayrkl...yhpdknkd.deaeekfveigeayevLsdeek 57 dyYk+Lgv+k+A+++ ikkay+k+ +hpd+n++ +ea++kf+e+ e+ v +++ + 6:3249487-3250761 2 TDYYKLLGVDKDADDNAIKKAYKKMalkWHPDRNNGsEEASKKFKEVRESQVVCTNSYS 60 7***********************87778****99735799******999887776655 PP == domain 2 score: 19.5 bits; conditional E-value: 3.1e-07 687505at2759 82 vevdlevtledlynGksveveivtkqlgpGlfqqvqCdeCpnvklvreleveiekGakdgqe..fegeg.eesdgeaGdlvvri........ 162 ++ ++v+l+dlynG+ ++++ ++ l + + l++++++G k+g++ f g e+ gea dlv+ + 6:3249487-3250761 69 ITRPFKVSLQDLYNGAVKHLKVGRRLLNGSTED-------------KVLDIQVHPGWKSGTKirFARAGnEQASGEAQDLVFVVeekphdtf 147 555678899999999998888887766443322.............3344555555554443113333312334455555544411111111 PP 687505at2759 163 ..kgddL.ynvtisleeall..gfereikhLDghkvkv......vkpgk.....geGmP..........Gdlyiefevelpkete 221 +g+dL nv+i l eal+ g +++++ LDg+k++v +kpg+ geGmP Gdl+++++v++p++ + 6:3249487-3250761 148 krEGNDLiCNVSIPLLEALTheGGKKQVESLDGRKIQVdlpagvIKPGQettvhGEGMPirkdgmvkkkGDLIVKWNVVFPDRLT 232 11677763699*******87334579*********985333333777753334489**9999999999999**********9854 PP >> 1:2196492-2196749 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.4 0.3 2.7e-17 6.3e-16 4 66 .. 1 72 [. 1 79 [. 0.87 Alignments for each domain: == domain 1 score: 52.4 bits; conditional E-value: 2.7e-17 687505at2759 4 dyYkiLgvsksAsekeikkayrkl...yhpdknk......ddeaeekfveigeayevLsdeekrkiydryGe 66 d+Y++L vsk+ + +eikk+yr+l yhpdk+ ++ea+ kf+++g ay vLsde++r+ +d +G+ 1:2196492-2196749 1 DLYAVLSVSKDSKLDEIKKSYRRLalkYHPDKHAtasefaKSEASLKFQQVGFAYAVLSDEKRRRRWDLMGK 72 89*********************88889****96222222578999***********************997 PP >> 1:8898542-8899801 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 3.3e-06 7.8e-05 3 25 .. 13 35 .. 11 40 .. 0.91 2 ! 11.6 0.1 8.2e-05 0.0019 48 78 .. 41 75 .. 35 79 .. 0.70 3 ? 0.7 0.0 0.18 4.2 60 104 .. 107 148 .. 100 186 .. 0.72 4 ! 16.2 0.0 3.2e-06 7.5e-05 115 217 .. 206 343 .] 185 343 .] 0.73 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 3.3e-06 687505at2759 3 kdyYkiLgvsksAsekeikkayr 25 kd Y++Lgv+++As ++ikk+y 1:8898542-8899801 13 KDPYEVLGVKRDASAADIKKTYF 35 89*******************95 PP == domain 2 score: 11.6 bits; conditional E-value: 8.2e-05 687505at2759 48 ayevLsdeekrkiydryGee....glkqdlFsdfr 78 +++L+de+kr +yd+yG+ g + Fs f 1:8898542-8899801 41 LFQILKDEKKRAAYDQYGSAsqqpGFDPNAFSGFG 75 689***************86111144445566665 PP == domain 3 score: 0.7 bits; conditional E-value: 0.18 687505at2759 60 iydryGeeglkqdlFsdfrGedvevdlevtledlynGksveveiv 104 +++++G+ g ++ + +rG+d+e+ l++++ + +G++ +v+i 1:8898542-8899801 107 LFNQFGSGGRRR---GPVRGADLETYLSISFLEACKGTTRKVTIS 148 566666666665...678999999999999999999999999875 PP == domain 4 score: 16.2 bits; conditional E-value: 3.2e-06 687505at2759 115 qvqCdeCpn...vklvreleveiekGakdgqef..egegee...sdgeaGdlvvri..........kgddLyn.vtisleeallgfereikh 187 qC +C + v++ ++++v+i G++dg+ + + g+ g+aGdl vr+ +g++Ly+ v+i l+ allg + ++ 1:8898542-8899801 206 SGQCGSCGGvgkVRTRKTVDVSIPAGVEDGMVIriPNSGDApitGTGTAGDLLVRLnvasskqfqrQGSNLYHsVKIPLHTALLGGRVRVPT 297 56888997622257788999**********965215778852225789****999844444444445889986378**************** PP 687505at2759 188 LDghk.vkv...vkpgk.....geGmP.......Gdlyiefevelp 217 LDg+ v+v ++pg+ g+G+P Gdl+++f+v+lp 1:8898542-8899801 298 LDGDVdVRVpsgTQPGEemklrGRGVPrvdrndtGDLFVTFSVTLP 343 **97425554447777533333678887777777888888888887 PP >> 1:9343960-9416153 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.0 1.3e-06 2.9e-05 48 71 .. 46 69 .. 39 87 .. 0.91 2 ! 9.5 0.1 0.00037 0.0086 85 109 .. 114 138 .. 110 160 .. 0.83 3 ? 2.5 0.6 0.049 1.1 100 124 .. 161 186 .. 152 191 .. 0.80 4 ! 10.3 0.3 0.0002 0.0047 116 143 .. 191 221 .. 185 223 .. 0.82 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 1.3e-06 687505at2759 48 ayevLsdeekrkiydryGeeglkq 71 ye+Lsd+ekr++yd+ Ge gl + 1:9343960-9416153 46 EYEILSDSEKRSVYDARGEAGLSE 69 5********************975 PP == domain 2 score: 9.5 bits; conditional E-value: 0.00037 687505at2759 85 dlevtledlynGksveveivtkqlg 109 +l+vtledly+Gk++++ ++++ + 1:9343960-9416153 114 SLHVTLEDLYKGKTTKLALTRNVIC 138 799**************99988764 PP == domain 3 score: 2.5 bits; conditional E-value: 0.049 687505at2759 100 eveivtkqlgpGlfqqvq..CdeCpnv 124 v+++ +q+gp ++qq+q CdeC ++ 1:9343960-9416153 161 GVRVTLRQMGP-MIQQIQsgCDECGGS 186 6899999****.78877767****875 PP == domain 4 score: 10.3 bits; conditional E-value: 0.0002 687505at2759 116 vqCdeCpnvklvre...leveiekGakdgqe 143 +C++C+++k+ e lev+i+kG+k gq+ 1:9343960-9416153 191 DRCTQCKGKKVLAEkkfLEVHIDKGMKGGQT 221 58********986644589********9987 PP >> 3:5500281-5500478 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 0.0 1.9e-10 4.4e-09 28 66 .. 6 45 .. 3 54 .. 0.92 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 1.9e-10 687505at2759 28 yhpdknkdde.aeekfveigeayevLsdeekrkiydryGe 66 +hpdkn++d+ a+++f+ i+ ay++Lsd+ r y+++G+ 3:5500281-5500478 6 HHPDKNPSDPlAADRFKSIAIAYQTLSDPALRAKYNEFGA 45 6******9986889************************96 PP >> 1:9416177-9416532 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.1 1.1e-08 2.5e-07 164 219 .. 22 88 .. 1 92 [] 0.78 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 1.1e-08 687505at2759 164 gddLynvtisleeallgfereikhLDghkvkv.vkpg...kgeGmP.......Gdlyiefevelpke 219 +d L v i l al g e +ikhLD++ + v ++pg kg+GmP G++y++ +v++p++ 1:9416177-9416532 22 NDLLIDVEIDLLTALAGGEFTIKHLDDRALLVkIEPGevmKGQGMPshrhhepGNMYVKLNVVFPNS 88 3447899********************98766344543338****55555555************97 PP >> 7:2277600-2277758 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 0.1 0.16 3.8 15 27 .. 1 13 [. 1 16 [. 0.88 2 ! 15.2 0.0 6.4e-06 0.00015 27 46 .. 32 51 .. 29 53 .] 0.90 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.16 687505at2759 15 Asekeikkayrkl 27 A+++++k+ yrk 7:2277600-2277758 1 ADDNQLKRGYRKA 13 7899*******95 PP == domain 2 score: 15.2 bits; conditional E-value: 6.4e-06 687505at2759 27 lyhpdknkddeaeekfveig 46 yhpdkn++ +aeekf+ei 7:2277600-2277758 32 QYHPDKNPSVDAEEKFKEIR 51 69****************96 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (225 nodes) Target sequences: 234 (75706 residues searched) Passed MSV filter: 14 (0.0598291); expected 4.7 (0.02) Passed bias filter: 14 (0.0598291); expected 4.7 (0.02) Passed Vit filter: 10 (0.042735); expected 0.2 (0.001) Passed Fwd filter: 10 (0.042735); expected 0.0 (1e-05) Initial search space (Z): 234 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.08 # Mc/sec: 212.92 // [ok]