post-assemble~abyss-fac

input_1:FASTA

input_1/scaffolds.fasta

>NODE_1_length_136573_cov_91.117457
AACACACTGTCACTTGACGCAGGGCTGAAAGTTCTACAGCAACGGTATACCAATATGATA
ATGGTTTACTAAATTTTCTGGGGATCCCTCAGCAGTAATCCCCCCTCTTCAACCTGAACT
TCATGCGACGGTGCATATTGCTGTTCCACCGGCAGTTCGGGATCTTCCCGATGTTCCAGC
AATTCAGGCTGTTCGCACAGCTTGCGATGCAACGAACCACCGGTTGCCACCACCAGTTCC
TGTAAACCCCGGCAGATGGCGAAAATGGGGATGCGCCTTTCGAGTGCGGCATTAATTAAC
GCCATGCTCAGAAGATCACGCCCGGGATCGGCGTCAGGCTCATCGCCGTTTTCACCATAT
AGGTGCGGCTGCACATTGCTGGGACTACCAGGAAGATAAATGCCATCGAGTTTCGGCAAA
AGTTGTTCAAGTAAGGACGGTTCCGCCAGCGCATGTGGCAGCGCAATTGGCAAACCGCCT
GCGTGGATGATGGCATTCAGGTACTTTTCTTGCAGAGTCTGGGTCGCATGACCCTTAAGC

Command

Output

input_1/N50.txt

n	n:1	L50	min	N80	N50	N20	E-size	max	sum	name
2111	2111	44	56	12467	38105	72320	43683	136573	5352474	scaffolds.fasta

Log

c2997108/ubuntu18:abyss centos:centos6
using docker
+ set -o pipefail
+ cd input_1
++ date +%Y%m%d_%H%M%S_%3N
+ PPDOCNAME=pp20220120_150650_877_16550
+ echo pp20220120_150650_877_16550
++ ls
++ egrep '(fa|fasta|fsa|fna)(|[.]gz)$'
+ docker run --name pp20220120_150650_877_16550 -v /yoshitake/test/post-assemble~abyss-fac/input_1:/yoshitake/test/post-assemble~abyss-fac/input_1 -w /yoshitake/test/post-assemble~abyss-fac/input_1 -u 2007:600 -i --rm c2997108/ubuntu18:abyss abyss-fac -s 1 scaffolds.fasta
+ post_processing
+ '[' 1 = 1 ']'
+ echo 0
+ exit