post-assemble~Repeatmodeler

Repeatmodeler is a de-novo repeat family identification and modeling package.

input_1:FASTA

input_1/ecoli.fasta

>ecoli
AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
TTCTGAACTGGTTACCTGCCGTGAGTAAATTAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCAA
TATAGGCATAGCGCACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACC
ATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAG
CCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAA
GTTCGGCGGTACATCAGTGGCAAATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCC
AGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTG
AAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTT
GACGGGACTCGCCGCCGCCCAGCCGGGGTTCCCGCTGGCGCAATTGAAAACTTTCGTCGATCAGGAATTT

Command

post-assemble~Repeatmodeler -c 16 -m 32 input_1/ecoli.fasta

Output

ecoli.fasta.tbl

==================================================
file name: ecoli.fasta              
sequences:             1
total length:    4641652 bp  (4641652 bp excl N/X-runs)
GC level:         50.79 %
bases masked:      38131 bp ( 0.82 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------

view all outputs

Log

pp post-assemble~Repeatmodeler -c 16 -m 32 input_1/ecoli.fasta