biocontainers/samtools:v1.7.0_cv4 centos:centos6 quay.io/biocontainers/pilon:1.23--0
using docker
++ docker pull quay.io/biocontainers/pilon:1.23--0
1.23--0: Pulling from biocontainers/pilon
a3ed95caeb02: Already exists
77c6c00e8b61: Already exists
3aaade50789a: Already exists
00cf8b9f3d2a: Already exists
7ff999a2256f: Already exists
d2ba336f2e44: Already exists
dfda3e01f2b6: Already exists
a3ed95caeb02: Already exists
10c3bb32200b: Already exists
dfc6b8bec003: Pulling fs layer
dfc6b8bec003: Verifying Checksum
dfc6b8bec003: Download complete
dfc6b8bec003: Pull complete
Digest: sha256:b35b050eab381f6d25c2386ca1c12124b74335cb10ccc354770562cf182bee31
Status: Downloaded newer image for quay.io/biocontainers/pilon:1.23--0
++ set +ex
+ set -o pipefail
+ docker run -v /data/user2/work/91:/data/user2/work/91 -w /data/user2/work/91 -u root -i --rm biocontainers/samtools:v1.7.0_cv4 samtools index input_2/scaffolds.fasta-DRR015801_1.fastq.gz.bam
++ echo 33554432
++ awk '{print $1/1024/1024}'
+ docker run -v /data/user2/work/91:/data/user2/work/91 -w /data/user2/work/91 -u root -i --rm quay.io/biocontainers/pilon:1.23--0 java -jar -Xmx32G /usr/local/share/pilon-1.23-0/pilon-1.23.jar --genome input_1/scaffolds.fasta --frags input_2/scaffolds.fasta-DRR015801_1.fastq.gz.bam
Pilon version 1.23 Mon Nov 26 16:04:05 2018 -0500
Genome: input_1/scaffolds.fasta
Fixing snps, indels, gaps, local
Input genome size: 4703774
Scanning BAMs
input_2/scaffolds.fasta-DRR015801_1.fastq.gz.bam: 19884144 reads, 0 filtered, 9730557 mapped, 9226242 proper, 217030 stray, FR 100% 290+/-141, max 1589
Processing contig_1:1-4655002
frags input_2/scaffolds.fasta-DRR015801_1.fastq.gz.bam: coverage 153
Total Reads: 9851191, Coverage: 153, minDepth: 15
Confirmed 3947400 of 4655002 bases (84.80%)
Corrected 71344 snps; 29 ambiguous bases; corrected 9764 small insertions totaling 12946 bases, 25789 small deletions totaling 29005 bases
Large collapsed region: contig_1:2637269-2735751 size 98483
Large collapsed region: contig_1:3770387-3847314 size 76928
# Attempting to fix local continuity breaks
# fix break: contig_1:1260-1265 0 -0 +0 NoSolution
# fix break: contig_1:1515-1944 0 -0 +0 NoSolution
# fix break: contig_1:2191-2201 0 -0 +0 NoSolution
# fix break: contig_1:2449-2460 0 -0 +0 NoSolution
# fix break: contig_1:2736-3597 0 -0 +0 NoSolution
# fix break: contig_1:3885-3997 0 -0 +0 NoSolution
fix break: contig_1:4240-4732 4253 -681 +674 BreakFix
# fix break: contig_1:5105-5192 0 -0 +0 NoSolution
# fix break: contig_1:6286-6340 0 -0 +0 NoSolution
# fix break: contig_1:6627-9315 0 -0 +0 NoSolution
fix break: contig_1:9525-10407 9308 -1320 +1325 BreakFix
fix break: contig_1:10744-11150 10505 -780 +784 BreakFix
fix break: contig_1:11693-11699 11536 -406 +401 BreakFix
# fix break: contig_1:12205-12206 0 -0 +0 NoSolution
# fix break: contig_1:13417 0 -0 +0 NoSolution
fix break: contig_1:13910 13671 -317 +319 BreakFix
fix break: contig_1:15561 15469 -322 +315 BreakFix
fix break: contig_1:15790 15565 -428 +421 BreakFix
# fix break: contig_1:17419-17753 0 -0 +0 NoSolution
# fix break: contig_1:21150-21152 0 -0 +0 NoSolution
# fix break: contig_1:21541-21870 0 -0 +0 NoSolution
# fix break: contig_1:23829 0 -0 +0 NoSolution
fix break: contig_1:25004 24891 -129 +129 BreakFix
fix break: contig_1:25477 25388 -283 +288 BreakFix
# fix break: contig_1:26132-26722 0 -0 +0 NoSolution
# fix break: contig_1:27612-28164 0 -0 +0 NoSolution
# fix break: contig_1:29548 0 -0 +0 NoSolution
# fix break: contig_1:32405-32463 0 -0 +0 NoSolution
fix break: contig_1:33908-34054 33740 -361 +241 BreakFix
# fix break: contig_1:35653-36030 0 -0 +0 NoSolution
fix break: contig_1:36806-36807 36769 -216 +214 BreakFix
# fix break: contig_1:38086-38287 0 -0 +0 NoSolution
# fix break: contig_1:39511-39537 0 -0 +0 NoSolution
fix break: contig_1:39750 39515 -392 +385 BreakFix
fix break: contig_1:40474 40391 -297 +297 BreakFix
# fix break: contig_1:40687 0 -0 +0 NoSolution
# fix break: contig_1:40959-41144 0 -0 +0 NoSolution
# fix break: contig_1:41723-41741 0 -0 +0 NoSolution
# fix break: contig_1:42569-42573 0 -0 +0 NoSolution
# fix break: contig_1:42812 0 -0 +0 NoSolution
# fix break: contig_1:43647-43659 0 -0 +0 NoSolution
fix break: contig_1:46247 46221 -245 +243 BreakFix
# fix break: contig_1:47529-47759 0 -0 +0 NoSolution
fix break: contig_1:48041-48146 47894 -396 +393 BreakFix
fix break: contig_1:51520-51522 51339 -205 +200 BreakFix
fix break: contig_1:52831 52624 -422 +422 BreakFix
# fix break: contig_1:53875-54138 0 -0 +0 NoSolution
# fix break: contig_1:54497-54741 0 -0 +0 NoSolution
# fix break: contig_1:55594-63836 0 -0 +0 NoSolution
fix break: contig_1:70668-70925 70594 -490 +487 BreakFix
# fix break: contig_1:72382 0 -0 +0 NoSolution
# fix break: contig_1:79330 0 -0 +0 NoSolution
fix break: contig_1:79764-79922 79607 -526 +399 BreakFix
fix break: contig_1:80426-80451 80667 -11 +9 BreakFix
# fix break: contig_1:81095 0 -0 +0 NoSolution
# fix break: contig_1:81871-81915 0 -0 +0 NoSolution
# fix break: contig_1:82133 0 -0 +0 NoSolution
fix break: contig_1:85737 85604 -371 +370 BreakFix
# fix break: contig_1:86211-86274 0 -0 +0 NoSolution
# fix break: contig_1:86535 0 -0 +0 NoSolution
# fix break: contig_1:87522-87654 0 -0 +0 NoSolution
fix break: contig_1:89676 89478 -339 +333 BreakFix
# fix break: contig_1:90089 0 -0 +0 NoSolution
# fix break: contig_1:90338-91616 0 -0 +0 NoSolution
# fix break: contig_1:92529-92648 0 -0 +0 NoSolution
fix break: contig_1:92900 92813 -179 +174 BreakFix
fix break: contig_1:93350-93353 93244 -350 +346 BreakFix
fix break: contig_1:96994-97274 96799 -707 +577 BreakFix
fix break: contig_1:99031-99176 99031 -321 +174 BreakFix
# fix break: contig_1:99514 0 -0 +0 NoSolution
fix break: contig_1:99854 99626 -277 +274 BreakFix
fix break: contig_1:100402 100250 -337 +330 BreakFix
fix break: contig_1:101614 101422 -396 +389 BreakFix
fix break: contig_1:104422-104424 104199 -391 +389 BreakFix
# fix break: contig_1:107859 0 -0 +0 NoSolution
# fix break: contig_1:110355-110441 0 -0 +0 NoSolution
fix break: contig_1:110659-110663 110604 -263 +260 BreakFix
# fix break: contig_1:111122 0 -0 +0 NoSolution
# fix break: contig_1:114851 0 -0 +0 NoSolution
# fix break: contig_1:117464-117476 0 -0 +0 NoSolution
# fix break: contig_1:117955 0 -0 +0 NoSolution
# fix break: contig_1:118668 0 -0 +0 NoSolution
# fix break: contig_1:119339-119357 0 -0 +0 NoSolution
# fix break: contig_1:119929-120641 0 -0 +0 NoSolution
# fix break: contig_1:122258 0 -0 +0 NoSolution
fix break: contig_1:122461-122490 122262 -412 +409 BreakFix
fix break: contig_1:129407 129411 -100 +99 BreakFix
# fix break: contig_1:129990-135652 0 -0 +0 NoSolution
# fix break: contig_1:136526 0 -0 +0 NoSolution
# fix break: contig_1:138508-138717 0 -0 +0 NoSolution
# fix break: contig_1:138995 0 -0 +0 NoSolution
# fix break: contig_1:143444-146156 0 -0 +0 NoSolution
# fix break: contig_1:149048-149081 0 -0 +0 NoSolution
fix break: contig_1:149682-149762 149472 -497 +497 BreakFix
# fix break: contig_1:150784-150958 0 -0 +0 NoSolution
# fix break: contig_1:153688-153691 0 -0 +0 NoSolution
# fix break: contig_1:153993-155039 0 -0 +0 NoSolution
# fix break: contig_1:155287-155291 0 -0 +0 NoSolution
fix break: contig_1:155545-155905 155359 -725 +719 BreakFix
# fix break: contig_1:156194-156203 0 -0 +0 NoSolution
# fix break: contig_1:156566-157087 0 -0 +0 NoSolution
fix break: contig_1:157664 157477 -188 +184 BreakFix
# fix break: contig_1:158529-160164 0 -0 +0 NoSolution
# fix break: contig_1:160473-160682 0 -0 +0 NoSolution
fix break: contig_1:161464-161598 161328 -271 +267 BreakFix
fix break: contig_1:162233 162041 -245 +241 BreakFix
fix break: contig_1:163335-163356 163146 -211 +206 BreakFix
# fix break: contig_1:164073-164074 0 -0 +0 NoSolution
# fix break: contig_1:164697-166474 0 -0 +0 NoSolution
# fix break: contig_1:166908-168802 0 -0 +0 NoSolution
# fix break: contig_1:169074 0 -0 +0 NoSolution
# fix break: contig_1:171581-179817 0 -0 +0 NoSolution
# fix break: contig_1:180096-184425 0 -0 +0 NoSolution
# fix break: contig_1:184701 0 -0 +0 NoSolution
# fix break: contig_1:185689 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:186370-186911 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:187293-187296 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:187592 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:188188-188195 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:188624 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:188900-189087 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:189797 0 -0 +0 NoSolution
# fix break: contig_1:190759 0 -0 +0 NoSolution
# fix break: contig_1:191525-193351 0 -0 +0 NoSolution
# fix break: contig_1:193607-196881 0 -0 +0 NoSolution
# fix break: contig_1:198426-198741 0 -0 +0 NoSolution
# fix break: contig_1:199023 0 -0 +0 NoSolution
# fix break: contig_1:199724-199725 0 -0 +0 NoSolution
fix break: contig_1:200241-200347 200010 -559 +655 BreakFix
# fix break: contig_1:201352-203778 0 -0 +0 NoSolution
# fix break: contig_1:203999-205068 0 -0 +0 NoSolution
# fix break: contig_1:205560-205561 0 -0 +0 NoSolution
fix break: contig_1:206322 206087 -404 +398 BreakFix
# fix break: contig_1:206652-206977 0 -0 +0 NoSolution
fix break: contig_1:207606 207560 -223 +226 BreakFix
# fix break: contig_1:209193 0 -0 +0 NoSolution
# fix break: contig_1:210650-210651 0 -0 +0 NoSolution
# fix break: contig_1:212232-212233 0 -0 +0 NoSolution
# fix break: contig_1:212902 0 -0 +0 NoSolution
# fix break: contig_1:213800-214201 0 -0 +0 NoSolution
# fix break: contig_1:214417-214421 0 -0 +0 NoSolution
# fix break: contig_1:215700-215814 0 -0 +0 NoSolution
# fix break: contig_1:216766-216767 0 -0 +0 NoSolution
fix break: contig_1:218191-218374 218105 -385 +379 BreakFix
# fix break: contig_1:218588-218978 0 -0 +0 NoSolution
fix break: contig_1:222089-222273 221869 -598 +497 BreakFix
fix break: contig_1:224285-224286 224120 -245 +239 BreakFix
fix break: contig_1:224798-224804 224588 -373 +375 BreakFix
fix break: contig_1:225064-225114 224962 -304 +300 BreakFix
# fix break: contig_1:225919 0 -0 +0 NoSolution
fix break: contig_1:226544-226723 226547 -315 +311 BreakFix
# fix break: contig_1:227144 0 -0 +0 NoSolution
fix break: contig_1:228823 228617 -431 +425 BreakFix
# fix break: contig_1:229382 0 -0 +0 NoSolution
fix break: contig_1:229598-229609 229386 -423 +422 BreakFix
fix break: contig_1:231892-231893 231892 -91 +90 BreakFix
# fix break: contig_1:233199 0 -0 +0 NoSolution
# fix break: contig_1:239301-239307 0 -0 +0 NoSolution
fix break: contig_1:240233 240211 -173 +172 BreakFix
# fix break: contig_1:243269-243296 0 -0 +0 NoSolution
fix break: contig_1:245155-245193 244931 -57 +55 BreakFix
# fix break: contig_1:246954-247037 0 -0 +0 NoSolution
# fix break: contig_1:247770-247773 0 -0 +0 NoSolution
# fix break: contig_1:248038-248569 0 -0 +0 NoSolution
fix break: contig_1:249233-249359 248990 -490 +362 BreakFix
fix break: contig_1:250657-250661 250421 -434 +434 BreakFix
# fix break: contig_1:251478 0 -0 +0 NoSolution
fix break: contig_1:251814-251817 251583 -459 +454 BreakFix
# fix break: contig_1:252144-252155 0 -0 +0 NoSolution
# fix break: contig_1:252424 0 -0 +0 NoSolution
# fix break: contig_1:252714 0 -0 +0 NoSolution
fix break: contig_1:253178-253181 253004 -409 +402 BreakFix
# fix break: contig_1:253529-253637 0 -0 +0 NoSolution
# fix break: contig_1:255183-255425 0 -0 +0 NoSolution
# fix break: contig_1:255650-255706 0 -0 +0 NoSolution
fix break: contig_1:257298 257157 -188 +183 BreakFix
# fix break: contig_1:257738-258065 0 -0 +0 NoSolution
fix break: contig_1:258809 258685 -323 +323 BreakFix
# fix break: contig_1:259232-259243 0 -0 +0 NoSolution
# fix break: contig_1:259778-259828 0 -0 +0 NoSolution
# fix break: contig_1:261978 0 -0 +0 NoSolution
fix break: contig_1:262943-262947 262719 -395 +390 BreakFix
fix break: contig_1:263359 263117 -442 +437 BreakFix
# fix break: contig_1:264313-264319 0 -0 +0 NoSolution
# fix break: contig_1:264656-264842 0 -0 +0 NoSolution
fix break: contig_1:267949 267755 -355 +349 BreakFix
# fix break: contig_1:268252-268260 0 -0 +0 NoSolution
# fix break: contig_1:271239-271357 0 -0 +0 NoSolution
fix break: contig_1:274153-274191 273951 -408 +363 BreakFix
# fix break: contig_1:275566 0 -0 +0 NoSolution
fix break: contig_1:277484-277485 277250 -429 +424 BreakFix
# fix break: contig_1:281278-281293 0 -0 +0 NoSolution
# fix break: contig_1:281715-281716 0 -0 +0 NoSolution
# fix break: contig_1:282671-282672 0 -0 +0 NoSolution
# fix break: contig_1:283636-283647 0 -0 +0 NoSolution
# fix break: contig_1:284146-284492 0 -0 +0 NoSolution
# fix break: contig_1:284947 0 -0 +0 NoSolution
# fix break: contig_1:285364-285380 0 -0 +0 NoSolution
# fix break: contig_1:288339 0 -0 +0 NoSolution
fix break: contig_1:289629 289443 -249 +250 BreakFix
# fix break: contig_1:289999 0 -0 +0 NoSolution
# fix break: contig_1:290304-290307 0 -0 +0 NoSolution
# fix break: contig_1:290624 0 -0 +0 NoSolution
# fix break: contig_1:290886-290991 0 -0 +0 NoSolution
# fix break: contig_1:292027-292028 0 -0 +0 NoSolution
# fix break: contig_1:293249-293400 0 -0 +0 NoSolution
# fix break: contig_1:293864-293868 0 -0 +0 NoSolution
fix break: contig_1:294095 293869 -423 +427 BreakFix
fix break: contig_1:294754-294757 294584 -353 +347 BreakFix
# fix break: contig_1:295592-295771 0 -0 +0 NoSolution
fix break: contig_1:296234-296235 296028 -208 +205 BreakFix
fix break: contig_1:296684 296615 -211 +202 BreakFix
fix break: contig_1:297387-297613 297188 -661 +652 BreakFix
# fix break: contig_1:297815-298040 0 -0 +0 NoSolution
# fix break: contig_1:298341-298346 0 -0 +0 NoSolution
# fix break: contig_1:299228 0 -0 +0 NoSolution
# fix break: contig_1:299843-299899 0 -0 +0 NoSolution
# fix break: contig_1:301100-301399 0 -0 +0 NoSolution
# fix break: contig_1:301668 0 -0 +0 NoSolution
# fix break: contig_1:301951-301957 0 -0 +0 NoSolution
# fix break: contig_1:303604 0 -0 +0 NoSolution
# fix break: contig_1:303825 0 -0 +0 NoSolution
# fix break: contig_1:304541-304542 0 -0 +0 NoSolution
# fix break: contig_1:304751-304945 0 -0 +0 NoSolution
fix break: contig_1:308352 308303 -235 +235 BreakFix
# fix break: contig_1:311447-311471 0 -0 +0 NoSolution
fix break: contig_1:312548-312787 312403 -374 +370 BreakFix
# fix break: contig_1:313363-313407 0 -0 +0 NoSolution
# fix break: contig_1:313992 0 -0 +0 NoSolution
fix break: contig_1:314241-314252 314196 -299 +303 BreakFix
fix break: contig_1:315814-315816 315636 -261 +257 BreakFix
fix break: contig_1:316485-317166 316249 -994 +986 BreakFix
# fix break: contig_1:318768 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:319078 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:319672-319675 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:319877-320292 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:321540-321954 0 -0 +0 NoSolution TandemRepeat 101
# fix break: contig_1:325031-325036 0 -0 +0 NoSolution
fix break: contig_1:325421-325425 325186 -279 +277 BreakFix
fix break: contig_1:325847 325734 -344 +345 BreakFix
# fix break: contig_1:326419 0 -0 +0 NoSolution
# fix break: contig_1:326736-326741 0 -0 +0 NoSolution
# fix break: contig_1:327525-327568 0 -0 +0 NoSolution
# fix break: contig_1:330986-330994 0 -0 +0 NoSolution
# fix break: contig_1:333919-341680 0 -0 +0 NoSolution
fix break: contig_1:345823 345613 -405 +400 BreakFix
fix break: contig_1:347462-347463 347373 -199 +194 BreakFix
fix break: contig_1:348105 347880 -278 +276 BreakFix
# fix break: contig_1:348392 0 -0 +0 NoSolution
# fix break: contig_1:348630-348634 0 -0 +0 NoSolution
# fix break: contig_1:348901-348913 0 -0 +0 NoSolution
# fix break: contig_1:349317-349350 0 -0 +0 NoSolution
fix break: contig_1:351423-351539 351288 -379 +373 BreakFix
fix break: contig_1:352980 352759 -222 +219 BreakFix
# fix break: contig_1:354079-354812 0 -0 +0 NoSolution
fix break: contig_1:355059-355133 354869 -461 +454 BreakFix
# fix break: contig_1:355604-355652 0 -0 +0 NoSolution
fix break: contig_1:357155 357056 -340 +339 BreakFix
# fix break: contig_1:357885-358566 0 -0 +0 NoSolution
fix break: contig_1:360848 360847 -215 +212 BreakFix
fix break: contig_1:362744-362948 362596 -487 +425 BreakFix
fix break: contig_1:365647 365430 -453 +447 BreakFix
# fix break: contig_1:368204-368241 0 -0 +0 NoSolution
fix break: contig_1:369210-369549 368985 -662 +1435 BreakFix
fix break: contig_1:370401 370232 -409 +405 BreakFix
# fix break: contig_1:371290 0 -0 +0 NoSolution
# fix break: contig_1:371877-371880 0 -0 +0 NoSolution
# fix break: contig_1:372776 0 -0 +0 NoSolution
# fix break: contig_1:375126-375332 0 -0 +0 NoSolution
# fix break: contig_1:376177-383648 0 -0 +0 NoSolution
# fix break: contig_1:383885 0 -0 +0 NoSolution
# fix break: contig_1:384266-387677 0 -0 +0 NoSolution
# fix break: contig_1:391638-391799 0 -0 +0 NoSolution
# fix break: contig_1:392017-399086 0 -0 +0 NoSolution
fix break: contig_1:399762-399857 399522 -371 +369 BreakFix
# fix break: contig_1:400215-400218 0 -0 +0 NoSolution
# fix break: contig_1:400796-400797 0 -0 +0 NoSolution
# fix break: contig_1:401308-401309 0 -0 +0 NoSolution
# fix break: contig_1:401612-401658 0 -0 +0 NoSolution
# fix break: contig_1:402048-402059 0 -0 +0 NoSolution
# fix break: contig_1:402280-402349 0 -0 +0 NoSolution
fix break: contig_1:402683 402477 -207 +203 BreakFix
fix break: contig_1:403170-403174 403110 -290 +292 BreakFix
# fix break: contig_1:403643-403651 0 -0 +0 NoSolution
# fix break: contig_1:404817-404828 0 -0 +0 NoSolution
fix break: contig_1:406027-406315 405886 -450 +599 BreakFix
fix break: contig_1:406949 406821 -171 +169 BreakFix
# fix break: contig_1:407641 0 -0 +0 NoSolution
# fix break: contig_1:408955-411235 0 -0 +0 NoSolution
# fix break: contig_1:412761-412771 0 -0 +0 NoSolution
# fix break: contig_1:413095-413295 0 -0 +0 NoSolution
# fix break: contig_1:413577-413580 0 -0 +0 NoSolution
fix break: contig_1:414195 414080 -224 +220 BreakFix
# fix break: contig_1:414777 0 -0 +0 NoSolution
fix break: contig_1:417353-417374 417214 -365 +364 BreakFix
fix break: contig_1:418422-418430 418242 -397 +395 BreakFix
# fix break: contig_1:418716-418727 0 -0 +0 NoSolution
# fix break: contig_1:418969-418995 0 -0 +0 NoSolution
# fix break: contig_1:419583-419625 0 -0 +0 NoSolution
# fix break: contig_1:420567 0 -0 +0 NoSolution
fix break: contig_1:421846-421860 421641 -434 +433 BreakFix
# fix break: contig_1:426067-426255 0 -0 +0 NoSolution
fix break: contig_1:426719 426574 -207 +207 BreakFix
fix break: contig_1:427656 427501 -156 +155 BreakFix
fix break: contig_1:428024-428402 428154 -485 +482 BreakFix
fix break: contig_1:428637-428638 428405 -234 +234 BreakFix
# fix break: contig_1:429424-429425 0 -0 +0 NoSolution
fix break: contig_1:430104 430108 -227 +224 BreakFix
# fix break: contig_1:430354-430366 0 -0 +0 NoSolution
# fix break: contig_1:430990-431008 0 -0 +0 NoSolution
# fix break: contig_1:434150-434311 0 -0 +0 NoSolution
fix break: contig_1:436129-436133 436021 -319 +317 BreakFix
fix break: contig_1:436944-437060 436717 -522 +519 BreakFix
# fix break: contig_1:437538-437539 0 -0 +0 NoSolution
# fix break: contig_1:438282-438605 0 -0 +0 NoSolution
# fix break: contig_1:438954 0 -0 +0 NoSolution
# fix break: contig_1:439214 0 -0 +0 NoSolution
fix break: contig_1:440504 440285 -289 +289 BreakFix
# fix break: contig_1:441251-441255 0 -0 +0 NoSolution
fix break: contig_1:441934 441885 -185 +180 BreakFix
# fix break: contig_1:442552 0 -0 +0 NoSolution
fix break: contig_1:442998-443054 442784 -483 +477 BreakFix
fix break: contig_1:443589-444101 443589 -670 +153 BreakFix
# fix break: contig_1:445765-445771 0 -0 +0 NoSolution
# fix break: contig_1:446491-446690 0 -0 +0 NoSolution
fix break: contig_1:447900 447697 -434 +430 BreakFix
# fix break: contig_1:448777-448839 0 -0 +0 NoSolution
# fix break: contig_1:449532 0 -0 +0 NoSolution
fix break: contig_1:451187 451101 -87 +87 BreakFix
# fix break: contig_1:454413 0 -0 +0 NoSolution
fix break: contig_1:455027 454917 -243 +243 BreakFix
fix break: contig_1:456406-456410 456213 -292 +286 BreakFix
# fix break: contig_1:457728-457761 0 -0 +0 NoSolution
fix break: contig_1:458594 458388 -450 +448 BreakFix
# fix break: contig_1:458817-458935 0 -0 +0 NoSolution
# fix break: contig_1:460195-460215 0 -0 +0 NoSolution
# fix break: contig_1:462303 0 -0 +0 NoSolution
# fix break: contig_1:463077 0 -0 +0 NoSolution
# fix break: contig_1:463467-463559 0 -0 +0 NoSolution
# fix break: contig_1:463806 0 -0 +0 NoSolution
fix break: contig_1:464046 463805 -482 +477 BreakFix
# fix break: contig_1:464437 0 -0 +0 NoSolution
fix break: contig_1:471935 471750 -324 +318 BreakFix
# fix break: contig_1:473274-473282 0 -0 +0 NoSolution
# fix break: contig_1:473787 0 -0 +0 NoSolution
# fix break: contig_1:477114-485330 0 -0 +0 NoSolution
# fix break: contig_1:485606-485993 0 -0 +0 NoSolution
fix break: contig_1:486627-486645 486687 -194 +191 BreakFix
# fix break: contig_1:487804-487814 0 -0 +0 NoSolution
# fix break: contig_1:488180 0 -0 +0 NoSolution
fix break: contig_1:489528-490983 489407 -1668 +462 BreakFix
# fix break: contig_1:491321-491335 0 -0 +0 NoSolution
# fix break: contig_1:491771-491775 0 -0 +0 NoSolution
# fix break: contig_1:492002-492013 0 -0 +0 NoSolution
# fix break: contig_1:492389-492398 0 -0 +0 NoSolution
# fix break: contig_1:492917-492926 0 -0 +0 NoSolution
# fix break: contig_1:493499 0 -0 +0 NoSolution
# fix break: contig_1:497284-497299 0 -0 +0 NoSolution TandemRepeat 109
# fix break: contig_1:498269-498311 0 -0 +0 NoSolution TandemRepeat 109
# fix break: contig_1:501235-501253 0 -0 +0 NoSolution
fix break: contig_1:501532 501531 -177 +174 BreakFix
# fix break: contig_1:501899-502084 0 -0 +0 NoSolution
fix break: contig_1:505004 504849 -368 +368 BreakFix
# fix break: contig_1:506156-506158 0 -0 +0 NoSolution
# fix break: contig_1:507648-507752 0 -0 +0 NoSolution
# fix break: contig_1:509480-509487 0 -0 +0 NoSolution
# fix break: contig_1:509737-509766 0 -0 +0 NoSolution
# fix break: contig_1:510074-510164 0 -0 +0 NoSolution
# fix break: contig_1:510550 0 -0 +0 NoSolution
# fix break: contig_1:510801-510803 0 -0 +0 NoSolution
fix break: contig_1:511113-511226 510883 -579 +578 BreakFix
fix break: contig_1:511952-511956 511728 -379 +375 BreakFix
fix break: contig_1:512797 512570 -448 +444 BreakFix
# fix break: contig_1:513427 0 -0 +0 NoSolution
# fix break: contig_1:513899 0 -0 +0 NoSolution
fix break: contig_1:514709 514590 -316 +317 BreakFix
# fix break: contig_1:515194 0 -0 +0 NoSolution
fix break: contig_1:517017-523116 516809 -6373 +668 BreakFix
# fix break: contig_1:525908-526066 0 -0 +0 NoSolution
# fix break: contig_1:527265-527272 0 -0 +0 NoSolution
# fix break: contig_1:529958-530233 0 -0 +0 NoSolution
# fix break: contig_1:530443-530463 0 -0 +0 NoSolution
# fix break: contig_1:531010-540989 0 -0 +0 NoSolution
fix break: contig_1:542590-542599 542493 -259 +257 BreakFix
fix break: contig_1:542835-542955 542626 -294 +292 BreakFix
fix break: contig_1:544108-544549 543880 -875 +1648 BreakFix
fix break: contig_1:544754 544758 -100 +99 BreakFix
fix break: contig_1:545855 545859 -233 +231 BreakFix
fix break: contig_1:548045 547837 -320 +314 BreakFix
# fix break: contig_1:549304-549825 0 -0 +0 NoSolution
fix break: contig_1:550156-550192 549916 -493 +488 BreakFix
fix break: contig_1:550609-550879 550411 -709 +709 BreakFix
fix break: contig_1:551266-551767 551035 -922 +918 BreakFix
fix break: contig_1:552709 552713 -216 +211 BreakFix
fix break: contig_1:552912-552928 552713 -344 +341 BreakFix
fix break: contig_1:553494-555207 553266 -2164 +2138 BreakFix
# fix break: contig_1:556182 0 -0 +0 NoSolution
fix break: contig_1:557149 556960 -240 +237 BreakFix
# fix break: contig_1:560463-560617 0 -0 +0 NoSolution
fix break: contig_1:562213 561988 -226 +221 BreakFix
fix break: contig_1:563340 563105 -251 +246 BreakFix
# fix break: contig_1:564082-564353 0 -0 +0 NoSolution
fix break: contig_1:564755-564953 564841 -181 +86 BreakFix
fix break: contig_1:565623 565596 -94 +90 BreakFix
fix break: contig_1:567665-567827 567434 -552 +554 BreakFix
fix break: contig_1:568278-568358 568207 -208 +207 BreakFix
# fix break: contig_1:568695-568833 0 -0 +0 NoSolution
# fix break: contig_1:569292 0 -0 +0 NoSolution
# fix break: contig_1:570018 0 -0 +0 NoSolution
# fix break: contig_1:570655 0 -0 +0 NoSolution
# fix break: contig_1:572892 0 -0 +0 NoSolution
# fix break: contig_1:578778-578919 0 -0 +0 NoSolution
fix break: contig_1:580289 580293 -233 +230 BreakFix
# fix break: contig_1:580813-580814 0 -0 +0 NoSolution
# fix break: contig_1:582647-582747 0 -0 +0 NoSolution TandemRepeat 222
# fix break: contig_1:583551-584059 0 -0 +0 NoSolution TandemRepeat 222
fix break: contig_1:585868 585872 -150 +149 BreakFix
# fix break: contig_1:587521-587821 0 -0 +0 NoSolution
fix break: contig_1:588815-588991 588636 -598 +597 BreakFix
fix break: contig_1:589891-589928 589819 -168 +165 BreakFix
fix break: contig_1:593071-593073 592953 -268 +271 BreakFix
fix break: contig_1:593451 593221 -231 +229 BreakFix
fix break: contig_1:596435 596287 -219 +216 BreakFix
fix break: contig_1:596809-596814 596809 -243 +238 BreakFix
# fix break: contig_1:597395-597397 0 -0 +0 NoSolution
fix break: contig_1:597728 597535 -367 +364 BreakFix
fix break: contig_1:598123-598126 597907 -212 +215 BreakFix
# fix break: contig_1:598828-598963 0 -0 +0 NoSolution
# fix break: contig_1:600044-600047 0 -0 +0 NoSolution
# fix break: contig_1:600659-600941 0 -0 +0 NoSolution
# fix break: contig_1:601542-601625 0 -0 +0 NoSolution
fix break: contig_1:602020-602450 601902 -741 +1514 BreakFix
# fix break: contig_1:603570 0 -0 +0 NoSolution
fix break: contig_1:603981-603982 603756 -448 +443 BreakFix
fix break: contig_1:604971-605143 604901 -243 +243 BreakFix
# fix break: contig_1:605496-606068 0 -0 +0 NoSolution
fix break: contig_1:606381-606396 606138 -456 +455 BreakFix
# fix break: contig_1:607610-608085 0 -0 +0 NoSolution
# fix break: contig_1:608966 0 -0 +0 NoSolution
# fix break: contig_1:609326-609608 0 -0 +0 NoSolution
# fix break: contig_1:611811 0 -0 +0 NoSolution
fix break: contig_1:613072-613115 613000 -339 +334 BreakFix
# fix break: contig_1:613611 0 -0 +0 NoSolution
# fix break: contig_1:613953-613992 0 -0 +0 NoSolution
# fix break: contig_1:615601 0 -0 +0 NoSolution
fix break: contig_1:616959 616940 -20 +17 BreakFix
# fix break: contig_1:619128 0 -0 +0 NoSolution
fix break: contig_1:619501-619505 619399 -331 +326 BreakFix
# fix break: contig_1:622667-623903 0 -0 +0 NoSolution
# fix break: contig_1:624403-624419 0 -0 +0 NoSolution
fix break: contig_1:625368-625503 625302 -410 +410 BreakFix
# fix break: contig_1:626525 0 -0 +0 NoSolution
# fix break: contig_1:626871-626873 0 -0 +0 NoSolution
# fix break: contig_1:627144-627145 0 -0 +0 NoSolution
fix break: contig_1:627516-627617 627323 -461 +455 BreakFix
fix break: contig_1:628469-628715 628458 -484 +478 BreakFix
# fix break: contig_1:630048 0 -0 +0 NoSolution
fix break: contig_1:631490 631251 -240 +235 BreakFix
# fix break: contig_1:633766-633767 0 -0 +0 NoSolution
# fix break: contig_1:635132-635318 0 -0 +0 NoSolution
# fix break: contig_1:638074 0 -0 +0 NoSolution
fix break: contig_1:638848-639077 638626 -232 +229 BreakFix
# fix break: contig_1:643844-643845 0 -0 +0 NoSolution
# fix break: contig_1:644151 0 -0 +0 NoSolution
# fix break: contig_1:646700-646701 0 -0 +0 NoSolution
# fix break: contig_1:647137 0 -0 +0 NoSolution
# fix break: contig_1:647365-647366 0 -0 +0 NoSolution
# fix break: contig_1:647597-647608 0 -0 +0 NoSolution
# fix break: contig_1:648197-648204 0 -0 +0 NoSolution
fix break: contig_1:648822 648602 -326 +323 BreakFix
# fix break: contig_1:651958-652565 0 -0 +0 NoSolution
# fix break: contig_1:654503-654658 0 -0 +0 NoSolution
# fix break: contig_1:656292-656293 0 -0 +0 NoSolution
fix break: contig_1:656589-656592 656409 -203 +202 BreakFix
fix break: contig_1:657136-657175 656901 -367 +363 BreakFix
fix break: contig_1:659359 659279 -163 +159 BreakFix
fix break: contig_1:659653 659445 -318 +316 BreakFix
# fix break: contig_1:661494-661513 0 -0 +0 NoSolution
fix break: contig_1:663262-663276 663265 -103 +100 BreakFix
# fix break: contig_1:664789-664979 0 -0 +0 NoSolution
fix break: contig_1:666114 666010 -155 +153 BreakFix
# fix break: contig_1:667057-667058 0 -0 +0 NoSolution
fix break: contig_1:667427-667443 667299 -355 +354 BreakFix
# fix break: contig_1:668216-668245 0 -0 +0 NoSolution
# fix break: contig_1:669788 0 -0 +0 NoSolution
# fix break: contig_1:670589 0 -0 +0 NoSolution
fix break: contig_1:671161 671032 -219 +215 BreakFix
# fix break: contig_1:672055 0 -0 +0 NoSolution
fix break: contig_1:672360 672246 -328 +319 BreakFix
fix break: contig_1:673229 672988 -242 +240 BreakFix
fix break: contig_1:674630-674631 674536 -320 +318 BreakFix
# fix break: contig_1:675475-675715 0 -0 +0 NoSolution
fix break: contig_1:676198-676254 675958 -496 +489 BreakFix
fix break: contig_1:676932 676906 -257 +256 BreakFix
# fix break: contig_1:677609 0 -0 +0 NoSolution
fix break: contig_1:677852 677613 -457 +453 BreakFix
fix break: contig_1:678143-678297 677951 -526 +520 BreakFix
fix break: contig_1:681985-682159 681981 -413 +411 BreakFix
# fix break: contig_1:682792 0 -0 +0 NoSolution
# fix break: contig_1:683283 0 -0 +0 NoSolution
# fix break: contig_1:684765 0 -0 +0 NoSolution
# fix break: contig_1:685044 0 -0 +0 NoSolution
fix break: contig_1:686073 685845 -324 +322 BreakFix
fix break: contig_1:686711-686902 686551 -445 +443 BreakFix
fix break: contig_1:687909-687981 687728 -255 +251 BreakFix
fix break: contig_1:690106 689903 -281 +278 BreakFix
fix break: contig_1:692770 692680 -327 +323 BreakFix
# fix break: contig_1:693431-693617 0 -0 +0 NoSolution
fix break: contig_1:694506 694375 -365 +363 BreakFix
fix break: contig_1:695543 695350 -346 +342 BreakFix
# fix break: contig_1:696378 0 -0 +0 NoSolution
fix break: contig_1:696873 696806 -77 +72 BreakFix
# fix break: contig_1:700410-700423 0 -0 +0 NoSolution
fix break: contig_1:700768-700773 700543 -250 +248 BreakFix
# fix break: contig_1:701317 0 -0 +0 NoSolution
# fix break: contig_1:702157-702461 0 -0 +0 NoSolution
# fix break: contig_1:702831-703018 0 -0 +0 NoSolution
# fix break: contig_1:703220-703331 0 -0 +0 NoSolution
fix break: contig_1:704257-704273 704033 -473 +469 BreakFix
# fix break: contig_1:705984 0 -0 +0 NoSolution
# fix break: contig_1:706255 0 -0 +0 NoSolution
# fix break: contig_1:706704-707424 0 -0 +0 NoSolution
# fix break: contig_1:709051 0 -0 +0 NoSolution
# fix break: contig_1:709545-709664 0 -0 +0 NoSolution
# fix break: contig_1:711210-711215 0 -0 +0 NoSolution
fix break: contig_1:711788 711594 -195 +192 BreakFix
fix break: contig_1:712261-712294 712202 -331 +327 BreakFix
fix break: contig_1:712532-712894 712348 -723 +717 BreakFix
fix break: contig_1:714959 714934 -26 +23 BreakFix
# fix break: contig_1:716562-716645 0 -0 +0 NoSolution
fix break: contig_1:717652-718021 717414 -633 +628 BreakFix
fix break: contig_1:718751-718769 718510 -497 +485 BreakFix
# fix break: contig_1:719065 0 -0 +0 NoSolution
# fix break: contig_1:721951 0 -0 +0 NoSolution
fix break: contig_1:722861 722673 -376 +370 BreakFix
fix break: contig_1:725691 725457 -465 +464 BreakFix
fix break: contig_1:726783 726617 -407 +404 BreakFix
# fix break: contig_1:728329-728387 0 -0 +0 NoSolution
# fix break: contig_1:729369 0 -0 +0 NoSolution
# fix break: contig_1:730030-730086 0 -0 +0 NoSolution
fix break: contig_1:730571-730578 730368 -211 +208 BreakFix
fix break: contig_1:731317 731316 -55 +52 BreakFix
fix break: contig_1:732944 732722 -223 +221 BreakFix
# fix break: contig_1:734564 0 -0 +0 NoSolution
# fix break: contig_1:736224-736225 0 -0 +0 NoSolution
# fix break: contig_1:737245-737293 0 -0 +0 NoSolution TandemRepeat 39
# fix break: contig_1:738246-738857 0 -0 +0 NoSolution TandemRepeat 39
# fix break: contig_1:739943-740018 0 -0 +0 NoSolution TandemRepeat 39
# fix break: contig_1:743258-743264 0 -0 +0 NoSolution
# fix break: contig_1:743540 0 -0 +0 NoSolution
fix break: contig_1:744771 744633 -284 +280 BreakFix
fix break: contig_1:747181 747011 -254 +253 BreakFix
# fix break: contig_1:748491-748648 0 -0 +0 NoSolution
fix break: contig_1:749143 748916 -471 +465 BreakFix
# fix break: contig_1:750389 0 -0 +0 NoSolution
fix break: contig_1:752486 752284 -339 +333 BreakFix
fix break: contig_1:753193 752971 -454 +449 BreakFix
# fix break: contig_1:754243 0 -0 +0 NoSolution
fix break: contig_1:754653 754472 -275 +272 BreakFix
fix break: contig_1:755826-755831 755997 -18 +19 BreakFix
fix break: contig_1:756131-756145 755997 -381 +381 BreakFix
# fix break: contig_1:758246 0 -0 +0 NoSolution
# fix break: contig_1:759200 0 -0 +0 NoSolution
# fix break: contig_1:759949-760080 0 -0 +0 NoSolution
fix break: contig_1:760486-760499 760251 -481 +478 BreakFix
# fix break: contig_1:761146-761292 0 -0 +0 NoSolution
# fix break: contig_1:762883-763149 0 -0 +0 NoSolution
# fix break: contig_1:764753 0 -0 +0 NoSolution
# fix break: contig_1:765204 0 -0 +0 NoSolution
# fix break: contig_1:767993-767997 0 -0 +0 NoSolution
# fix break: contig_1:769069-769080 0 -0 +0 NoSolution
# fix break: contig_1:769366-769408 0 -0 +0 NoSolution
# fix break: contig_1:770812 0 -0 +0 NoSolution
# fix break: contig_1:771142 0 -0 +0 NoSolution
# fix break: contig_1:772076 0 -0 +0 NoSolution
fix break: contig_1:773107 773111 -203 +197 BreakFix
# fix break: contig_1:773526-773697 0 -0 +0 NoSolution
# fix break: contig_1:774061 0 -0 +0 NoSolution
# fix break: contig_1:774311 0 -0 +0 NoSolution
fix break: contig_1:775654-775806 775589 -240 +238 BreakFix
# fix break: contig_1:776290 0 -0 +0 NoSolution
# fix break: contig_1:776502 0 -0 +0 NoSolution
# fix break: contig_1:777311 0 -0 +0 NoSolution
# fix break: contig_1:780183 0 -0 +0 NoSolution
# fix break: contig_1:780453-780456 0 -0 +0 NoSolution
fix break: contig_1:781073-781080 780852 -224 +222 BreakFix
fix break: contig_1:783759-783764 783647 -226 +226 BreakFix
fix break: contig_1:784268 784074 -304 +300 BreakFix
fix break: contig_1:784748 784566 -380 +378 BreakFix
# fix break: contig_1:786252 0 -0 +0 NoSolution
# fix break: contig_1:787342-787528 0 -0 +0 NoSolution
# fix break: contig_1:788545 0 -0 +0 NoSolution
fix break: contig_1:789032 788803 -388 +383 BreakFix
fix break: contig_1:789832-789884 789821 -218 +218 BreakFix
# fix break: contig_1:790476-790593 0 -0 +0 NoSolution
# fix break: contig_1:791023 0 -0 +0 NoSolution
# fix break: contig_1:792863 0 -0 +0 NoSolution
fix break: contig_1:793556 793560 -30 +26 BreakFix
# fix break: contig_1:794367 0 -0 +0 NoSolution
fix break: contig_1:795790-795793 795750 -180 +177 BreakFix
fix break: contig_1:796334-796346 796207 -349 +347 BreakFix
fix break: contig_1:797895-797903 797701 -424 +421 BreakFix
# fix break: contig_1:799804-799948 0 -0 +0 NoSolution
# fix break: contig_1:800817-801513 0 -0 +0 NoSolution
# fix break: contig_1:802141 0 -0 +0 NoSolution
fix break: contig_1:803606-803613 803451 -176 +173 BreakFix
# fix break: contig_1:804391-804393 0 -0 +0 NoSolution
# fix break: contig_1:804762-805057 0 -0 +0 NoSolution
# fix break: contig_1:805586-805641 0 -0 +0 NoSolution
# fix break: contig_1:808024 0 -0 +0 NoSolution
# fix break: contig_1:808287-808403 0 -0 +0 NoSolution
# fix break: contig_1:808688-808836 0 -0 +0 NoSolution
# fix break: contig_1:810059 0 -0 +0 NoSolution
fix break: contig_1:810841-810843 810733 -318 +315 BreakFix
# fix break: contig_1:811332 0 -0 +0 NoSolution
# fix break: contig_1:811617-811620 0 -0 +0 NoSolution
fix break: contig_1:812095 811974 -236 +232 BreakFix
# fix break: contig_1:813444-813647 0 -0 +0 NoSolution
fix break: contig_1:814116 813919 -374 +371 BreakFix
fix break: contig_1:815600 815424 -272 +269 BreakFix
fix break: contig_1:816692 816514 -249 +248 BreakFix
# fix break: contig_1:816991 0 -0 +0 NoSolution
# fix break: contig_1:818688 0 -0 +0 NoSolution
fix break: contig_1:822156-822161 821921 -480 +479 BreakFix
# fix break: contig_1:822399-822403 0 -0 +0 NoSolution
# fix break: contig_1:822807-822956 0 -0 +0 NoSolution
# fix break: contig_1:823497 0 -0 +0 NoSolution
fix break: contig_1:826983-827075 826793 -300 +300 BreakFix
fix break: contig_1:827989 827836 -382 +377 BreakFix
fix break: contig_1:828212-828309 827988 -525 +516 BreakFix
# fix break: contig_1:829139-829247 0 -0 +0 NoSolution
fix break: contig_1:829679 829510 -384 +380 BreakFix
# fix break: contig_1:830154 0 -0 +0 NoSolution
fix break: contig_1:830373-830444 830137 -489 +480 BreakFix
fix break: contig_1:830843-830845 830627 -435 +435 BreakFix
# fix break: contig_1:832555-832661 0 -0 +0 NoSolution
fix break: contig_1:833326 833104 -443 +440 BreakFix
fix break: contig_1:834107-834111 833913 -198 +199 BreakFix
# fix break: contig_1:834984 0 -0 +0 NoSolution
fix break: contig_1:836419 836225 -429 +425 BreakFix
# fix break: contig_1:837192 0 -0 +0 NoSolution
# fix break: contig_1:837931-837932 0 -0 +0 NoSolution
fix break: contig_1:839457-839667 839257 -443 +441 BreakFix
fix break: contig_1:846513-846523 846425 -94 +93 BreakFix
# fix break: contig_1:852851-853944 0 -0 +0 NoSolution
# fix break: contig_1:854149-854150 0 -0 +0 NoSolution
# fix break: contig_1:855182 0 -0 +0 NoSolution
fix break: contig_1:856893-857032 856781 -462 +461 BreakFix
fix break: contig_1:858117 858116 -137 +134 BreakFix
# fix break: contig_1:859547 0 -0 +0 NoSolution
fix break: contig_1:861038 860894 -264 +262 BreakFix
fix break: contig_1:861761 861564 -286 +280 BreakFix
fix break: contig_1:862674-862678 862673 -246 +239 BreakFix
# fix break: contig_1:865275-865492 0 -0 +0 NoSolution
fix break: contig_1:865755-865807 865519 -509 +453 BreakFix
# fix break: contig_1:867257-868064 0 -0 +0 NoSolution
# fix break: contig_1:868303-868369 0 -0 +0 NoSolution
# fix break: contig_1:868786 0 -0 +0 NoSolution
fix break: contig_1:870145-870151 869912 -394 +397 BreakFix
fix break: contig_1:871267-871277 871084 -432 +431 BreakFix
fix break: contig_1:871621-871815 871390 -555 +379 BreakFix
# fix break: contig_1:872208-872224 0 -0 +0 NoSolution
# fix break: contig_1:872428 0 -0 +0 NoSolution
# fix break: contig_1:872935 0 -0 +0 NoSolution
# fix break: contig_1:873579 0 -0 +0 NoSolution
# fix break: contig_1:874349 0 -0 +0 NoSolution
# fix break: contig_1:875615-875624 0 -0 +0 NoSolution
# fix break: contig_1:877396-877437 0 -0 +0 NoSolution
fix break: contig_1:878068 877825 -484 +482 BreakFix
fix break: contig_1:879714-879724 879714 -185 +185 BreakFix
fix break: contig_1:880999 880964 -188 +189 BreakFix
# fix break: contig_1:882735 0 -0 +0 NoSolution
fix break: contig_1:883538-883559 883476 -248 +247 BreakFix
# fix break: contig_1:884233-884544 0 -0 +0 NoSolution
# fix break: contig_1:886264 0 -0 +0 NoSolution
# fix break: contig_1:887615 0 -0 +0 NoSolution
# fix break: contig_1:887866 0 -0 +0 NoSolution
# fix break: contig_1:888241 0 -0 +0 NoSolution
# fix break: contig_1:888648 0 -0 +0 NoSolution
# fix break: contig_1:890204-890207 0 -0 +0 NoSolution
# fix break: contig_1:890493 0 -0 +0 NoSolution
# fix break: contig_1:891307-891491 0 -0 +0 NoSolution
# fix break: contig_1:891707 0 -0 +0 NoSolution
# fix break: contig_1:891928-891932 0 -0 +0 NoSolution
# fix break: contig_1:892499 0 -0 +0 NoSolution
# fix break: contig_1:892787 0 -0 +0 NoSolution
# fix break: contig_1:893674-893908 0 -0 +0 NoSolution
# fix break: contig_1:894263-895992 0 -0 +0 NoSolution
fix break: contig_1:896831 896835 -231 +227 BreakFix
# fix break: contig_1:897225-897380 0 -0 +0 NoSolution
# fix break: contig_1:898139-900189 0 -0 +0 NoSolution
# fix break: contig_1:901204 0 -0 +0 NoSolution
# fix break: contig_1:901680-902326 0 -0 +0 NoSolution
# fix break: contig_1:902589 0 -0 +0 NoSolution
# fix break: contig_1:904019-904300 0 -0 +0 NoSolution
# fix break: contig_1:905641-905652 0 -0 +0 NoSolution
# fix break: contig_1:907236 0 -0 +0 NoSolution
# fix break: contig_1:907789-907831 0 -0 +0 NoSolution
fix break: contig_1:908775-908797 908575 -405 +399 BreakFix
# fix break: contig_1:909606-909856 0 -0 +0 NoSolution
# fix break: contig_1:910605 0 -0 +0 NoSolution
# fix break: contig_1:912824 0 -0 +0 NoSolution
# fix break: contig_1:913211 0 -0 +0 NoSolution
# fix break: contig_1:918939-919137 0 -0 +0 NoSolution
fix break: contig_1:919780-919810 919673 -348 +346 BreakFix
# fix break: contig_1:920177 0 -0 +0 NoSolution
# fix break: contig_1:922432-922581 0 -0 +0 NoSolution
fix break: contig_1:923538 923340 -420 +417 BreakFix
# fix break: contig_1:924021 0 -0 +0 NoSolution
# fix break: contig_1:925573 0 -0 +0 NoSolution
fix break: contig_1:925952 925733 -387 +391 BreakFix
# fix break: contig_1:926974 0 -0 +0 NoSolution
fix break: contig_1:928821 928610 -400 +398 BreakFix
fix break: contig_1:929712-929720 929724 -235 +233 BreakFix
fix break: contig_1:930599 930384 -387 +384 BreakFix
fix break: contig_1:938171-938252 938055 -260 +257 BreakFix
fix break: contig_1:938855-938950 938681 -506 +505 BreakFix
# fix break: contig_1:943789 0 -0 +0 NoSolution
fix break: contig_1:944914-944916 944738 -383 +379 BreakFix
fix break: contig_1:945120 944901 -365 +364 BreakFix
fix break: contig_1:945414-945469 945208 -379 +384 BreakFix
# fix break: contig_1:949007 0 -0 +0 NoSolution
# fix break: contig_1:949874 0 -0 +0 NoSolution
# fix break: contig_1:950225-950339 0 -0 +0 NoSolution
fix break: contig_1:951535 951345 -342 +336 BreakFix
# fix break: contig_1:954336-954345 0 -0 +0 NoSolution
# fix break: contig_1:955666 0 -0 +0 NoSolution
# fix break: contig_1:956434 0 -0 +0 NoSolution
fix break: contig_1:958987-958988 958960 -238 +236 BreakFix
# fix break: contig_1:965365 0 -0 +0 NoSolution
# fix break: contig_1:969256-969395 0 -0 +0 NoSolution
# fix break: contig_1:969680-969743 0 -0 +0 NoSolution
fix break: contig_1:970854-970917 970707 -351 +360 BreakFix
# fix break: contig_1:972211 0 -0 +0 NoSolution
# fix break: contig_1:972498-972550 0 -0 +0 NoSolution
# fix break: contig_1:974469 0 -0 +0 NoSolution
fix break: contig_1:975584-975588 975354 -388 +387 BreakFix
fix break: contig_1:979184 978971 -245 +242 BreakFix
# fix break: contig_1:980342 0 -0 +0 NoSolution
fix break: contig_1:980641-980645 980595 -279 +282 BreakFix
fix break: contig_1:982807-982814 982670 -228 +229 BreakFix
fix break: contig_1:983816-983820 983596 -368 +362 BreakFix
# fix break: contig_1:984234-984284 0 -0 +0 NoSolution
# fix break: contig_1:985359-986876 0 -0 +0 NoSolution
# fix break: contig_1:987138 0 -0 +0 NoSolution
# fix break: contig_1:988635-988850 0 -0 +0 NoSolution
# fix break: contig_1:989905 0 -0 +0 NoSolution
fix break: contig_1:992157-992263 992072 -395 +493 BreakFix
fix break: contig_1:993114-993125 992930 -402 +401 BreakFix
# fix break: contig_1:993583-993585 0 -0 +0 NoSolution
# fix break: contig_1:998650 0 -0 +0 NoSolution
# fix break: contig_1:999989-1000175 0 -0 +0 NoSolution
fix break: contig_1:1001332-1017703 1001097 -16750 +602 BreakFix
# fix break: contig_1:1018613-1018614 0 -0 +0 NoSolution
# fix break: contig_1:1019035-1019036 0 -0 +0 NoSolution
fix break: contig_1:1019994-1019995 1019997 -112 +108 BreakFix
fix break: contig_1:1020315-1020389 1020084 -498 +483 BreakFix
# fix break: contig_1:1021593-1021599 0 -0 +0 NoSolution
fix break: contig_1:1022127-1022269 1021889 -505 +496 BreakFix
fix break: contig_1:1022902 1022672 -450 +444 BreakFix
fix break: contig_1:1023228-1023346 1022997 -568 +566 BreakFix
fix break: contig_1:1023749-1023751 1023526 -414 +415 BreakFix
fix break: contig_1:1024939-1025076 1024938 -263 +254 BreakFix
# fix break: contig_1:1025478-1025708 0 -0 +0 NoSolution
fix break: contig_1:1026219-1026234 1026071 -335 +343 BreakFix
# fix break: contig_1:1026668-1026822 0 -0 +0 NoSolution
# fix break: contig_1:1028332-1028413 0 -0 +0 NoSolution
fix break: contig_1:1028963 1028745 -219 +214 BreakFix
fix break: contig_1:1029343 1029292 -283 +278 BreakFix
# fix break: contig_1:1029799-1030119 0 -0 +0 NoSolution
fix break: contig_1:1031071 1030870 -429 +423 BreakFix
# fix break: contig_1:1032494 0 -0 +0 NoSolution
fix break: contig_1:1032975-1033117 1032814 -520 +511 BreakFix
fix break: contig_1:1033980 1033784 -197 +197 BreakFix
# fix break: contig_1:1034606-1034607 0 -0 +0 NoSolution
# fix break: contig_1:1035637-1036192 0 -0 +0 NoSolution
# fix break: contig_1:1036566 0 -0 +0 NoSolution
fix break: contig_1:1036811 1036570 -242 +236 BreakFix
fix break: contig_1:1039297 1039063 -375 +370 BreakFix
fix break: contig_1:1040999 1040847 -301 +298 BreakFix
fix break: contig_1:1041857 1041636 -310 +307 BreakFix
fix break: contig_1:1042665-1042735 1042515 -395 +389 BreakFix
# fix break: contig_1:1044427 0 -0 +0 NoSolution
fix break: contig_1:1045375 1045236 -140 +138 BreakFix
# fix break: contig_1:1046309-1046641 0 -0 +0 NoSolution
fix break: contig_1:1047043-1047048 1047046 -116 +117 BreakFix
fix break: contig_1:1047288-1047794 1047046 -916 +916 BreakFix
# fix break: contig_1:1049766 0 -0 +0 NoSolution
# fix break: contig_1:1050248-1050413 0 -0 +0 NoSolution
# fix break: contig_1:1050808 0 -0 +0 NoSolution
# fix break: contig_1:1051090-1052178 0 -0 +0 NoSolution
fix break: contig_1:1052530 1052308 -313 +311 BreakFix
# fix break: contig_1:1053877 0 -0 +0 NoSolution
fix break: contig_1:1056649-1056811 1056430 -382 +378 BreakFix
# fix break: contig_1:1058956 0 -0 +0 NoSolution
fix break: contig_1:1059895 1059820 -94 +93 BreakFix
fix break: contig_1:1060300-1060343 1060307 -252 +269 BreakFix
# fix break: contig_1:1060558 0 -0 +0 NoSolution
fix break: contig_1:1060884 1060709 -376 +373 BreakFix
fix break: contig_1:1061520 1061442 -289 +286 BreakFix
fix break: contig_1:1062205 1062002 -409 +406 BreakFix
# fix break: contig_1:1062664-1062809 0 -0 +0 NoSolution
# fix break: contig_1:1063634 0 -0 +0 NoSolution
# fix break: contig_1:1064730 0 -0 +0 NoSolution
# fix break: contig_1:1068680-1068685 0 -0 +0 NoSolution
# fix break: contig_1:1074028 0 -0 +0 NoSolution
# fix break: contig_1:1074891-1074893 0 -0 +0 NoSolution TandemRepeat 536
# fix break: contig_1:1075684-1076453 0 -0 +0 NoSolution TandemRepeat 535
# fix break: contig_1:1076861-1077034 0 -0 +0 NoSolution TandemRepeat 535
fix break: contig_1:1077734 1077574 -193 +194 BreakFix
fix break: contig_1:1078265 1078160 -341 +336 BreakFix
# fix break: contig_1:1080323 0 -0 +0 NoSolution
# fix break: contig_1:1085732-1085865 0 -0 +0 NoSolution
# fix break: contig_1:1086072-1086132 0 -0 +0 NoSolution
# fix break: contig_1:1086558 0 -0 +0 NoSolution
fix break: contig_1:1090183-1090184 1089986 -431 +427 BreakFix
fix break: contig_1:1091429 1091304 -341 +339 BreakFix
# fix break: contig_1:1091813-1091821 0 -0 +0 NoSolution
fix break: contig_1:1092443 1092361 -83 +83 BreakFix
# fix break: contig_1:1093254-1094047 0 -0 +0 NoSolution
# fix break: contig_1:1094265 0 -0 +0 NoSolution
fix break: contig_1:1095047-1095048 1094870 -298 +293 BreakFix
# fix break: contig_1:1097477 0 -0 +0 NoSolution
fix break: contig_1:1098127 1097906 -376 +371 BreakFix
# fix break: contig_1:1099257 0 -0 +0 NoSolution
fix break: contig_1:1100652-1102055 1100438 -1660 +654 BreakFix
fix break: contig_1:1104962-1105380 1104752 -790 +778 BreakFix
# fix break: contig_1:1106218-1107500 0 -0 +0 NoSolution
fix break: contig_1:1107841 1107697 -385 +383 BreakFix
fix break: contig_1:1108327 1108087 -447 +443 BreakFix
# fix break: contig_1:1109917 0 -0 +0 NoSolution
fix break: contig_1:1111156 1111030 -308 +303 BreakFix
fix break: contig_1:1112169 1111960 -210 +206 BreakFix
# fix break: contig_1:1113174 0 -0 +0 NoSolution
# fix break: contig_1:1114217-1114223 0 -0 +0 NoSolution
# fix break: contig_1:1114479 0 -0 +0 NoSolution
fix break: contig_1:1114803 1114617 -219 +212 BreakFix
# fix break: contig_1:1116168-1116180 0 -0 +0 NoSolution
# fix break: contig_1:1116669-1145656 0 -0 +0 NoSolution
fix break: contig_1:1146200-1146209 1146031 -360 +355 BreakFix
# fix break: contig_1:1146748-1147144 0 -0 +0 NoSolution
fix break: contig_1:1147611-1147668 1147441 -291 +290 BreakFix
# fix break: contig_1:1148983 0 -0 +0 NoSolution
fix break: contig_1:1149738-1149744 1149806 -177 +175 BreakFix
fix break: contig_1:1149957-1150057 1149806 -248 +247 BreakFix
# fix break: contig_1:1151470-1151511 0 -0 +0 NoSolution
# fix break: contig_1:1152050-1152245 0 -0 +0 NoSolution
# fix break: contig_1:1153346-1153601 0 -0 +0 NoSolution
# fix break: contig_1:1153993 0 -0 +0 NoSolution
# fix break: contig_1:1157198 0 -0 +0 NoSolution
# fix break: contig_1:1158118-1164248 0 -0 +0 NoSolution
fix break: contig_1:1164871 1164652 -463 +454 BreakFix
# fix break: contig_1:1165114 0 -0 +0 NoSolution
# fix break: contig_1:1165331-1165333 0 -0 +0 NoSolution
fix break: contig_1:1165754-1165881 1165603 -491 +485 BreakFix
# fix break: contig_1:1167008 0 -0 +0 NoSolution
fix break: contig_1:1168383 1168382 -131 +128 BreakFix
fix break: contig_1:1169539 1169368 -343 +339 BreakFix
fix break: contig_1:1170365-1170499 1170287 -213 +205 BreakFix
fix break: contig_1:1171088 1170891 -416 +410 BreakFix
fix break: contig_1:1172075-1172181 1171983 -399 +396 BreakFix
fix break: contig_1:1173330-1173516 1173193 -202 +200 BreakFix
fix break: contig_1:1174293-1174411 1174415 -94 +91 BreakFix
# fix break: contig_1:1174793-1174798 0 -0 +0 NoSolution
# fix break: contig_1:1177451-1177456 0 -0 +0 NoSolution
fix break: contig_1:1178452 1178315 -138 +134 BreakFix
# fix break: contig_1:1178704-1178708 0 -0 +0 NoSolution
fix break: contig_1:1179190-1179346 1179088 -259 +253 BreakFix
# fix break: contig_1:1179663-1179673 0 -0 +0 NoSolution
fix break: contig_1:1180282-1180456 1180135 -565 +560 BreakFix
fix break: contig_1:1180829 1180700 -296 +294 BreakFix
fix break: contig_1:1181197-1181573 1180999 -814 +809 BreakFix
# fix break: contig_1:1182486-1182487 0 -0 +0 NoSolution
# fix break: contig_1:1183748-1183847 0 -0 +0 NoSolution
# fix break: contig_1:1185181-1185223 0 -0 +0 NoSolution
# fix break: contig_1:1187143-1187300 0 -0 +0 NoSolution
# fix break: contig_1:1187578 0 -0 +0 NoSolution
fix break: contig_1:1187981-1188276 1187738 -779 +770 BreakFix
fix break: contig_1:1188811 1188582 -468 +460 BreakFix
# fix break: contig_1:1189636 0 -0 +0 NoSolution
fix break: contig_1:1190862 1190866 -132 +129 BreakFix
# fix break: contig_1:1192498 0 -0 +0 NoSolution
fix break: contig_1:1193374-1193386 1193132 -400 +399 BreakFix
fix break: contig_1:1194107 1194036 -309 +303 BreakFix
# fix break: contig_1:1194588-1194706 0 -0 +0 NoSolution
fix break: contig_1:1197765-1197767 1197583 -207 +205 BreakFix
# fix break: contig_1:1198137-1198138 0 -0 +0 NoSolution
fix break: contig_1:1199166 1199165 -202 +198 BreakFix
fix break: contig_1:1204324 1204112 -404 +407 BreakFix
fix break: contig_1:1204838-1205009 1204632 -482 +480 BreakFix
fix break: contig_1:1206072-1206307 1206072 -467 +493 BreakFix
fix break: contig_1:1206925 1206726 -200 +198 BreakFix
fix break: contig_1:1207573 1207368 -206 +203 BreakFix
fix break: contig_1:1209278 1209046 -233 +233 BreakFix
# fix break: contig_1:1210577 0 -0 +0 NoSolution
# fix break: contig_1:1212012 0 -0 +0 NoSolution
# fix break: contig_1:1212804-1212973 0 -0 +0 NoSolution
# fix break: contig_1:1213962-1213965 0 -0 +0 NoSolution
# fix break: contig_1:1214372-1214374 0 -0 +0 NoSolution
fix break: contig_1:1214642 1214646 -230 +229 BreakFix
fix break: contig_1:1215111 1214882 -230 +228 BreakFix
fix break: contig_1:1215715-1215716 1215660 -289 +284 BreakFix
# fix break: contig_1:1216367-1216583 0 -0 +0 NoSolution
fix break: contig_1:1217418-1217541 1217178 -565 +437 BreakFix
# fix break: contig_1:1217762-1217780 0 -0 +0 NoSolution
fix break: contig_1:1218227-1218306 1218231 -299 +295 BreakFix
fix break: contig_1:1218734-1218738 1218496 -350 +344 BreakFix
# fix break: contig_1:1219096 0 -0 +0 NoSolution
fix break: contig_1:1221848-1222049 1221611 -360 +357 BreakFix
# fix break: contig_1:1224791 0 -0 +0 NoSolution
# fix break: contig_1:1225568 0 -0 +0 NoSolution
# fix break: contig_1:1227712-1227793 0 -0 +0 NoSolution
fix break: contig_1:1228087 1227857 -425 +424 BreakFix
# fix break: contig_1:1228451 0 -0 +0 NoSolution
fix break: contig_1:1230655-1230662 1230520 -237 +237 BreakFix
# fix break: contig_1:1231094-1231215 0 -0 +0 NoSolution
# fix break: contig_1:1233142-1233145 0 -0 +0 NoSolution
# fix break: contig_1:1233381-1236939 0 -0 +0 NoSolution
fix break: contig_1:1238238-1238315 1238074 -453 +448 BreakFix
# fix break: contig_1:1239427-1239811 0 -0 +0 NoSolution
fix break: contig_1:1240053-1240359 1239812 -750 +741 BreakFix
# fix break: contig_1:1240768-1240796 0 -0 +0 NoSolution
fix break: contig_1:1241918-1242120 1241701 -598 +593 BreakFix
# fix break: contig_1:1245667-1246016 0 -0 +0 NoSolution
# fix break: contig_1:1246362-1246369 0 -0 +0 NoSolution
# fix break: contig_1:1248427-1248629 0 -0 +0 NoSolution
fix break: contig_1:1249058 1249062 -199 +195 BreakFix
# fix break: contig_1:1249464 0 -0 +0 NoSolution
# fix break: contig_1:1249896 0 -0 +0 NoSolution
# fix break: contig_1:1250167 0 -0 +0 NoSolution
# fix break: contig_1:1250654-1252363 0 -0 +0 NoSolution
fix break: contig_1:1252669-1252671 1252608 -64 +68 BreakFix
# fix break: contig_1:1253565 0 -0 +0 NoSolution
# fix break: contig_1:1253776-1253777 0 -0 +0 NoSolution
# fix break: contig_1:1254457-1262413 0 -0 +0 NoSolution
# fix break: contig_1:1263272-1263282 0 -0 +0 NoSolution
fix break: contig_1:1264107 1263895 -321 +317 BreakFix
# fix break: contig_1:1265345-1265368 0 -0 +0 NoSolution
# fix break: contig_1:1265821 0 -0 +0 NoSolution
# fix break: contig_1:1266122 0 -0 +0 NoSolution
# fix break: contig_1:1268050-1272583 0 -0 +0 NoSolution
# fix break: contig_1:1272885-1288690 0 -0 +0 NoSolution
# fix break: contig_1:1289041-1289063 0 -0 +0 NoSolution
# fix break: contig_1:1289379-1291550 0 -0 +0 NoSolution
# fix break: contig_1:1292328 0 -0 +0 NoSolution
fix break: contig_1:1293214 1293080 -135 +134 BreakFix
fix break: contig_1:1293535-1293774 1293539 -382 +375 BreakFix
# fix break: contig_1:1295463-1295467 0 -0 +0 NoSolution
fix break: contig_1:1296376 1296346 -137 +135 BreakFix
fix break: contig_1:1297392 1297268 -264 +257 BreakFix
# fix break: contig_1:1298582-1298656 0 -0 +0 NoSolution
# fix break: contig_1:1298913 0 -0 +0 NoSolution
fix break: contig_1:1299383-1299431 1299227 -338 +329 BreakFix
# fix break: contig_1:1301555 0 -0 +0 NoSolution
# fix break: contig_1:1301807-1301963 0 -0 +0 NoSolution
# fix break: contig_1:1302719-1303394 0 -0 +0 NoSolution
fix break: contig_1:1304714 1304500 -316 +314 BreakFix
fix break: contig_1:1307369 1307145 -445 +443 BreakFix
fix break: contig_1:1308165-1308166 1308002 -309 +310 BreakFix
fix break: contig_1:1309528-1309530 1309330 -385 +385 BreakFix
fix break: contig_1:1310249-1310417 1310250 -244 +238 BreakFix
# fix break: contig_1:1313858-1313997 0 -0 +0 NoSolution
fix break: contig_1:1315268-1315269 1315161 -53 +53 BreakFix
fix break: contig_1:1315892-1315939 1315710 -460 +464 BreakFix
fix break: contig_1:1318087 1317858 -420 +418 BreakFix
fix break: contig_1:1319188 1319065 -124 +123 BreakFix
fix break: contig_1:1320020-1320031 1319788 -412 +408 BreakFix
# fix break: contig_1:1321413-1326327 0 -0 +0 NoSolution
# fix break: contig_1:1326589-1326658 0 -0 +0 NoSolution
# fix break: contig_1:1326953-1330772 0 -0 +0 NoSolution
# fix break: contig_1:1331049-1331304 0 -0 +0 NoSolution
# fix break: contig_1:1331594-1331639 0 -0 +0 NoSolution
# fix break: contig_1:1332459-1334596 0 -0 +0 NoSolution
# fix break: contig_1:1334860 0 -0 +0 NoSolution
# fix break: contig_1:1335960 0 -0 +0 NoSolution
# fix break: contig_1:1336384 0 -0 +0 NoSolution
# fix break: contig_1:1336631 0 -0 +0 NoSolution
# fix break: contig_1:1337587 0 -0 +0 NoSolution
# fix break: contig_1:1338438-1338570 0 -0 +0 NoSolution
fix break: contig_1:1338786-1338872 1338572 -533 +529 BreakFix
fix break: contig_1:1339173 1339110 -305 +302 BreakFix
# fix break: contig_1:1340712-1340721 0 -0 +0 NoSolution
fix break: contig_1:1341602-1341609 1341423 -329 +331 BreakFix
# fix break: contig_1:1343379 0 -0 +0 NoSolution
# fix break: contig_1:1343645-1343775 0 -0 +0 NoSolution
# fix break: contig_1:1345066-1345087 0 -0 +0 NoSolution
fix break: contig_1:1346391 1346149 -483 +479 BreakFix
fix break: contig_1:1347139-1347152 1347004 -312 +305 BreakFix
# fix break: contig_1:1347446 0 -0 +0 NoSolution
# fix break: contig_1:1348360-1348729 0 -0 +0 NoSolution
# fix break: contig_1:1352389 0 -0 +0 NoSolution
# fix break: contig_1:1354913 0 -0 +0 NoSolution
# fix break: contig_1:1355400 0 -0 +0 NoSolution
# fix break: contig_1:1355815 0 -0 +0 NoSolution
fix break: contig_1:1358220 1357987 -449 +447 BreakFix
fix break: contig_1:1359444-1359476 1359301 -396 +391 BreakFix
# fix break: contig_1:1359691-1361991 0 -0 +0 NoSolution
# fix break: contig_1:1363042 0 -0 +0 NoSolution
# fix break: contig_1:1364524-1364545 0 -0 +0 NoSolution
fix break: contig_1:1364928-1366977 1365090 -2123 +405 BreakFix
# fix break: contig_1:1367652-1367665 0 -0 +0 NoSolution
# fix break: contig_1:1368798 0 -0 +0 NoSolution
fix break: contig_1:1369962-1370003 1369902 -249 +251 BreakFix
fix break: contig_1:1370329-1370350 1370156 -436 +437 BreakFix
# fix break: contig_1:1371431-1371433 0 -0 +0 NoSolution
# fix break: contig_1:1372317-1373948 0 -0 +0 NoSolution
# fix break: contig_1:1374609-1374616 0 -0 +0 NoSolution
# fix break: contig_1:1375486-1375515 0 -0 +0 NoSolution
# fix break: contig_1:1376399 0 -0 +0 NoSolution
# fix break: contig_1:1377197 0 -0 +0 NoSolution
fix break: contig_1:1378669 1378440 -230 +226 BreakFix
fix break: contig_1:1379078-1379247 1379082 -166 +162 BreakFix
fix break: contig_1:1379913 1379675 -370 +365 BreakFix
# fix break: contig_1:1381364-1381519 0 -0 +0 NoSolution
fix break: contig_1:1381948 1381799 -388 +384 BreakFix
# fix break: contig_1:1382445-1382635 0 -0 +0 NoSolution
# fix break: contig_1:1383332-1389894 0 -0 +0 NoSolution
# fix break: contig_1:1390167-1390212 0 -0 +0 NoSolution
# fix break: contig_1:1390421-1390464 0 -0 +0 NoSolution
fix break: contig_1:1390940 1390808 -353 +352 BreakFix
fix break: contig_1:1391305 1391164 -142 +139 BreakFix
# fix break: contig_1:1392839-1393276 0 -0 +0 NoSolution
# fix break: contig_1:1393608 0 -0 +0 NoSolution
# fix break: contig_1:1395346 0 -0 +0 NoSolution
fix break: contig_1:1396049 1395811 -481 +480 BreakFix
# fix break: contig_1:1399638 0 -0 +0 NoSolution
# fix break: contig_1:1400051 0 -0 +0 NoSolution
# fix break: contig_1:1400707-1400731 0 -0 +0 NoSolution
# fix break: contig_1:1401006 0 -0 +0 NoSolution
# fix break: contig_1:1401478 0 -0 +0 NoSolution
fix break: contig_1:1402608 1402612 -191 +187 BreakFix
fix break: contig_1:1405380 1405274 -153 +149 BreakFix
# fix break: contig_1:1409115-1413591 0 -0 +0 NoSolution
fix break: contig_1:1417687-1418073 1417467 -770 +761 BreakFix
# fix break: contig_1:1420827-1420832 0 -0 +0 NoSolution
fix break: contig_1:1421042 1420829 -350 +350 BreakFix
fix break: contig_1:1421479 1421415 -283 +280 BreakFix
fix break: contig_1:1423405-1423526 1423377 -337 +329 BreakFix
# fix break: contig_1:1423819 0 -0 +0 NoSolution
# fix break: contig_1:1424402-1424465 0 -0 +0 NoSolution
fix break: contig_1:1425547 1425428 -120 +119 BreakFix
# fix break: contig_1:1428183-1428717 0 -0 +0 NoSolution
# fix break: contig_1:1428931-1428936 0 -0 +0 NoSolution
fix break: contig_1:1429277-1429470 1429063 -408 +392 BreakFix
fix break: contig_1:1430548 1430547 -170 +168 BreakFix
# fix break: contig_1:1430987-1431198 0 -0 +0 NoSolution
# fix break: contig_1:1431871-1432063 0 -0 +0 NoSolution
fix break: contig_1:1432581 1432376 -434 +428 BreakFix
# fix break: contig_1:1433592 0 -0 +0 NoSolution
fix break: contig_1:1433935-1433972 1433773 -200 +193 BreakFix
# fix break: contig_1:1435032 0 -0 +0 NoSolution
# fix break: contig_1:1435848-1435898 0 -0 +0 NoSolution
fix break: contig_1:1436797-1436804 1436621 -424 +423 BreakFix
# fix break: contig_1:1437341 0 -0 +0 NoSolution
# fix break: contig_1:1437565-1437566 0 -0 +0 NoSolution
# fix break: contig_1:1437886-1438010 0 -0 +0 NoSolution
# fix break: contig_1:1438450 0 -0 +0 NoSolution
# fix break: contig_1:1438729 0 -0 +0 NoSolution
fix break: contig_1:1440541 1440322 -409 +402 BreakFix
# fix break: contig_1:1441150-1441152 0 -0 +0 NoSolution
fix break: contig_1:1442175-1442181 1442087 -304 +304 BreakFix
# fix break: contig_1:1443682-1443692 0 -0 +0 NoSolution
# fix break: contig_1:1444285-1444288 0 -0 +0 NoSolution
# fix break: contig_1:1444642-1444973 0 -0 +0 NoSolution
# fix break: contig_1:1446282-1456394 0 -0 +0 NoSolution
fix break: contig_1:1459537 1459375 -235 +229 BreakFix
# fix break: contig_1:1460637 0 -0 +0 NoSolution
# fix break: contig_1:1460922-1460928 0 -0 +0 NoSolution
# fix break: contig_1:1463888 0 -0 +0 NoSolution
# fix break: contig_1:1464391 0 -0 +0 NoSolution
# fix break: contig_1:1466163-1466324 0 -0 +0 NoSolution
fix break: contig_1:1466562-1466690 1466328 -393 +376 BreakFix
# fix break: contig_1:1467598 0 -0 +0 NoSolution
# fix break: contig_1:1468193 0 -0 +0 NoSolution
# fix break: contig_1:1469138-1469380 0 -0 +0 NoSolution
# fix break: contig_1:1469601-1469602 0 -0 +0 NoSolution
fix break: contig_1:1471268 1471064 -332 +326 BreakFix
# fix break: contig_1:1474013 0 -0 +0 NoSolution
# fix break: contig_1:1475028-1475029 0 -0 +0 NoSolution
fix break: contig_1:1476739-1476741 1476543 -429 +432 BreakFix
# fix break: contig_1:1477574-1477922 0 -0 +0 NoSolution
# fix break: contig_1:1478680-1478716 0 -0 +0 NoSolution
# fix break: contig_1:1479765 0 -0 +0 NoSolution
# fix break: contig_1:1481548 0 -0 +0 NoSolution
# fix break: contig_1:1482200-1482397 0 -0 +0 NoSolution
fix break: contig_1:1483746-1483747 1483514 -477 +471 BreakFix
# fix break: contig_1:1484024-1484029 0 -0 +0 NoSolution
# fix break: contig_1:1489581-1500342 0 -0 +0 NoSolution
# fix break: contig_1:1500923-1508597 0 -0 +0 NoSolution
# fix break: contig_1:1508819-1511036 0 -0 +0 NoSolution
fix break: contig_1:1513274 1513262 -236 +229 BreakFix
fix break: contig_1:1514647 1514458 -432 +425 BreakFix
fix break: contig_1:1518024 1518003 -173 +172 BreakFix
fix break: contig_1:1521456 1521315 -381 +378 BreakFix
fix break: contig_1:1522224 1522038 -423 +420 BreakFix
# fix break: contig_1:1524618 0 -0 +0 NoSolution
# fix break: contig_1:1524845-1524846 0 -0 +0 NoSolution
# fix break: contig_1:1526370 0 -0 +0 NoSolution
fix break: contig_1:1527380-1527386 1527380 -168 +167 BreakFix
fix break: contig_1:1527911 1527735 -325 +321 BreakFix
# fix break: contig_1:1529298-1529312 0 -0 +0 NoSolution
# fix break: contig_1:1531285 0 -0 +0 NoSolution
fix break: contig_1:1531628-1531708 1531572 -137 +128 BreakFix
# fix break: contig_1:1532131 0 -0 +0 NoSolution
fix break: contig_1:1533216 1533042 -175 +171 BreakFix
# fix break: contig_1:1534148 0 -0 +0 NoSolution
# fix break: contig_1:1534498 0 -0 +0 NoSolution
# fix break: contig_1:1536494 0 -0 +0 NoSolution
fix break: contig_1:1538280-1538282 1538280 -209 +206 BreakFix
fix break: contig_1:1538948-1539052 1538952 -162 +156 BreakFix
fix break: contig_1:1539617-1539627 1539617 -224 +219 BreakFix
# fix break: contig_1:1541609 0 -0 +0 NoSolution
# fix break: contig_1:1542703 0 -0 +0 NoSolution
# fix break: contig_1:1544958-1545088 0 -0 +0 NoSolution
# fix break: contig_1:1545574 0 -0 +0 NoSolution
fix break: contig_1:1546301 1546162 -140 +139 BreakFix
fix break: contig_1:1546856 1546710 -365 +360 BreakFix
# fix break: contig_1:1549129-1549398 0 -0 +0 NoSolution
# fix break: contig_1:1549852-1554497 0 -0 +0 NoSolution
# fix break: contig_1:1555016-1555105 0 -0 +0 NoSolution
fix break: contig_1:1558850-1559036 1558824 -438 +434 BreakFix
# fix break: contig_1:1559825 0 -0 +0 NoSolution
# fix break: contig_1:1561425 0 -0 +0 NoSolution
# fix break: contig_1:1562372 0 -0 +0 NoSolution
# fix break: contig_1:1562917 0 -0 +0 NoSolution
# fix break: contig_1:1566502-1566816 0 -0 +0 NoSolution TandemRepeat 96
# fix break: contig_1:1567538 0 -0 +0 NoSolution TandemRepeat 96
fix break: contig_1:1569904 1569782 -303 +298 BreakFix
# fix break: contig_1:1570480 0 -0 +0 NoSolution
fix break: contig_1:1573811-1573986 1573700 -495 +490 BreakFix
fix break: contig_1:1574303-1574474 1574198 -356 +351 BreakFix
fix break: contig_1:1576007 1576011 -183 +181 BreakFix
# fix break: contig_1:1576316-1576420 0 -0 +0 NoSolution
fix break: contig_1:1577689 1577544 -146 +142 BreakFix
fix break: contig_1:1578920-1579065 1578678 -561 +551 BreakFix
# fix break: contig_1:1580637 0 -0 +0 NoSolution
fix break: contig_1:1581135 1580896 -243 +244 BreakFix
# fix break: contig_1:1582866-1582872 0 -0 +0 NoSolution
# fix break: contig_1:1584050 0 -0 +0 NoSolution
# fix break: contig_1:1586139 0 -0 +0 NoSolution
fix break: contig_1:1587296 1587167 -247 +242 BreakFix
fix break: contig_1:1588483 1588383 -207 +206 BreakFix
# fix break: contig_1:1590857 0 -0 +0 NoSolution
# fix break: contig_1:1594009-1594059 0 -0 +0 NoSolution
# fix break: contig_1:1595663 0 -0 +0 NoSolution
fix break: contig_1:1597652-1597957 1597471 -487 +480 BreakFix
# fix break: contig_1:1598332 0 -0 +0 NoSolution
# fix break: contig_1:1599415 0 -0 +0 NoSolution
# fix break: contig_1:1600186 0 -0 +0 NoSolution
# fix break: contig_1:1600488-1600631 0 -0 +0 NoSolution
fix break: contig_1:1601179-1601193 1601182 -183 +180 BreakFix
# fix break: contig_1:1602103 0 -0 +0 NoSolution
fix break: contig_1:1604344 1604348 -74 +69 BreakFix
# fix break: contig_1:1604656 0 -0 +0 NoSolution
fix break: contig_1:1605874 1605878 -161 +157 BreakFix
# fix break: contig_1:1608733 0 -0 +0 NoSolution
# fix break: contig_1:1609189-1609231 0 -0 +0 NoSolution
# fix break: contig_1:1609475 0 -0 +0 NoSolution
fix break: contig_1:1610130 1609901 -370 +365 BreakFix
fix break: contig_1:1610435-1610731 1610273 -701 +1474 BreakFix
fix break: contig_1:1611523 1611527 -189 +185 BreakFix
# fix break: contig_1:1612878-1613178 0 -0 +0 NoSolution
# fix break: contig_1:1614603 0 -0 +0 NoSolution
fix break: contig_1:1620188 1619977 -392 +388 BreakFix
fix break: contig_1:1621674 1621456 -423 +413 BreakFix
# fix break: contig_1:1623098-1623224 0 -0 +0 NoSolution
# fix break: contig_1:1624402 0 -0 +0 NoSolution
# fix break: contig_1:1624613 0 -0 +0 NoSolution
# fix break: contig_1:1627351 0 -0 +0 NoSolution
# fix break: contig_1:1628649 0 -0 +0 NoSolution
# fix break: contig_1:1629143-1629249 0 -0 +0 NoSolution
fix break: contig_1:1629632-1629679 1629509 -412 +408 BreakFix
fix break: contig_1:1630241 1630030 -452 +447 BreakFix
fix break: contig_1:1631507 1631267 -436 +434 BreakFix
fix break: contig_1:1632135 1631894 -242 +236 BreakFix
# fix break: contig_1:1633640-1633721 0 -0 +0 NoSolution
# fix break: contig_1:1635165-1635217 0 -0 +0 NoSolution
fix break: contig_1:1635791-1635799 1635752 -258 +260 BreakFix
# fix break: contig_1:1636259-1636260 0 -0 +0 NoSolution
# fix break: contig_1:1637311-1637324 0 -0 +0 NoSolution
# fix break: contig_1:1637697 0 -0 +0 NoSolution
fix break: contig_1:1640696-1640826 1640453 -615 +609 BreakFix
# fix break: contig_1:1641806-1641809 0 -0 +0 NoSolution
# fix break: contig_1:1642978 0 -0 +0 NoSolution
fix break: contig_1:1645975 1645736 -240 +237 BreakFix
# fix break: contig_1:1650567 0 -0 +0 NoSolution
# fix break: contig_1:1651212 0 -0 +0 NoSolution
fix break: contig_1:1651911-1651948 1651685 -472 +468 BreakFix
# fix break: contig_1:1652802-1652810 0 -0 +0 NoSolution
# fix break: contig_1:1655525 0 -0 +0 NoSolution
fix break: contig_1:1657247-1657445 1657051 -613 +604 BreakFix
fix break: contig_1:1659654 1659657 -209 +207 BreakFix
# fix break: contig_1:1661260-1661395 0 -0 +0 NoSolution
# fix break: contig_1:1661686-1661832 0 -0 +0 NoSolution
# fix break: contig_1:1662447-1662464 0 -0 +0 NoSolution
fix break: contig_1:1662851-1663348 1662670 -851 +846 BreakFix
# fix break: contig_1:1664129 0 -0 +0 NoSolution
fix break: contig_1:1664592 1664415 -410 +405 BreakFix
# fix break: contig_1:1667119 0 -0 +0 NoSolution
fix break: contig_1:1667522-1667598 1667314 -526 +522 BreakFix
# fix break: contig_1:1668524 0 -0 +0 NoSolution
fix break: contig_1:1669603-1669781 1669393 -623 +618 BreakFix
# fix break: contig_1:1670651-1670748 0 -0 +0 NoSolution
# fix break: contig_1:1674270-1674277 0 -0 +0 NoSolution
# fix break: contig_1:1674518-1675107 0 -0 +0 NoSolution
fix break: contig_1:1676003-1676229 1676008 -296 +292 BreakFix
# fix break: contig_1:1677880 0 -0 +0 NoSolution
# fix break: contig_1:1678235-1678238 0 -0 +0 NoSolution
fix break: contig_1:1679640 1679409 -331 +326 BreakFix
# fix break: contig_1:1680278-1680284 0 -0 +0 NoSolution
# fix break: contig_1:1680826 0 -0 +0 NoSolution
# fix break: contig_1:1682050 0 -0 +0 NoSolution
# fix break: contig_1:1682495-1682505 0 -0 +0 NoSolution
# fix break: contig_1:1683658-1683691 0 -0 +0 NoSolution
fix break: contig_1:1684082-1684378 1683944 -602 +1375 BreakFix
# fix break: contig_1:1684802-1684805 0 -0 +0 NoSolution
fix break: contig_1:1685818-1685896 1685643 -416 +415 BreakFix
# fix break: contig_1:1686521-1686530 0 -0 +0 NoSolution
fix break: contig_1:1687365-1687367 1687154 -383 +382 BreakFix
# fix break: contig_1:1687982-1688417 0 -0 +0 NoSolution
# fix break: contig_1:1688872-1688873 0 -0 +0 NoSolution
# fix break: contig_1:1689081-1689257 0 -0 +0 NoSolution
# fix break: contig_1:1691355-1691548 0 -0 +0 NoSolution
fix break: contig_1:1692260 1692121 -348 +348 BreakFix
# fix break: contig_1:1695395 0 -0 +0 NoSolution
# fix break: contig_1:1696379-1696551 0 -0 +0 NoSolution
# fix break: contig_1:1696973-1697136 0 -0 +0 NoSolution
# fix break: contig_1:1697399-1697401 0 -0 +0 NoSolution
# fix break: contig_1:1697669-1697784 0 -0 +0 NoSolution
# fix break: contig_1:1699177-1699192 0 -0 +0 NoSolution
# fix break: contig_1:1699964 0 -0 +0 NoSolution
# fix break: contig_1:1701217 0 -0 +0 NoSolution
# fix break: contig_1:1702004-1702029 0 -0 +0 NoSolution
# fix break: contig_1:1703324 0 -0 +0 NoSolution
# fix break: contig_1:1703593-1703594 0 -0 +0 NoSolution
# fix break: contig_1:1705479 0 -0 +0 NoSolution
# fix break: contig_1:1705757-1705768 0 -0 +0 NoSolution
# fix break: contig_1:1706242 0 -0 +0 NoSolution
fix break: contig_1:1707404 1707307 -270 +268 BreakFix
fix break: contig_1:1709238-1709286 1709205 -162 +146 BreakFix
# fix break: contig_1:1709582 0 -0 +0 NoSolution
# fix break: contig_1:1710428-1710435 0 -0 +0 NoSolution
fix break: contig_1:1710848-1710854 1710648 -439 +439 BreakFix
# fix break: contig_1:1712287-1712742 0 -0 +0 NoSolution
# fix break: contig_1:1716801 0 -0 +0 NoSolution
# fix break: contig_1:1718689 0 -0 +0 NoSolution
fix break: contig_1:1719599 1719403 -427 +418 BreakFix
# fix break: contig_1:1720210-1720228 0 -0 +0 NoSolution
fix break: contig_1:1722468-1722656 1722266 -573 +573 BreakFix
# fix break: contig_1:1725051-1725245 0 -0 +0 NoSolution
# fix break: contig_1:1726615 0 -0 +0 NoSolution
fix break: contig_1:1727607 1727555 -53 +50 BreakFix
# fix break: contig_1:1729004 0 -0 +0 NoSolution
# fix break: contig_1:1730153-1730421 0 -0 +0 NoSolution
# fix break: contig_1:1730755 0 -0 +0 NoSolution
# fix break: contig_1:1733027 0 -0 +0 NoSolution
# fix break: contig_1:1733876-1733879 0 -0 +0 NoSolution
# fix break: contig_1:1734088-1734438 0 -0 +0 NoSolution
# fix break: contig_1:1735239-1735240 0 -0 +0 NoSolution
# fix break: contig_1:1735677 0 -0 +0 NoSolution
# fix break: contig_1:1736209-1736262 0 -0 +0 NoSolution
fix break: contig_1:1737464 1737365 -147 +144 BreakFix
fix break: contig_1:1737906 1737876 -266 +265 BreakFix
# fix break: contig_1:1739345 0 -0 +0 NoSolution
# fix break: contig_1:1739629 0 -0 +0 NoSolution
# fix break: contig_1:1741484 0 -0 +0 NoSolution
fix break: contig_1:1741788-1741994 1741627 -448 +672 BreakFix
# fix break: contig_1:1743877-1743881 0 -0 +0 NoSolution
fix break: contig_1:1744587-1744593 1744461 -53 +51 BreakFix
fix break: contig_1:1745861 1745781 -246 +241 BreakFix
# fix break: contig_1:1747025 0 -0 +0 NoSolution
# fix break: contig_1:1747284-1747285 0 -0 +0 NoSolution
fix break: contig_1:1749040-1749055 1749040 -256 +254 BreakFix
# fix break: contig_1:1750335-1750651 0 -0 +0 NoSolution
fix break: contig_1:1751985 1751752 -234 +230 BreakFix
# fix break: contig_1:1752565-1752587 0 -0 +0 NoSolution
# fix break: contig_1:1753573 0 -0 +0 NoSolution
fix break: contig_1:1754639-1754907 1754415 -700 +696 BreakFix
fix break: contig_1:1755417 1755418 -165 +159 BreakFix
fix break: contig_1:1760272 1760078 -386 +384 BreakFix
# fix break: contig_1:1762192-1762265 0 -0 +0 NoSolution
fix break: contig_1:1763038 1762873 -265 +262 BreakFix
# fix break: contig_1:1763624-1763627 0 -0 +0 NoSolution
fix break: contig_1:1764963 1764962 -210 +206 BreakFix
fix break: contig_1:1766787 1766593 -371 +367 BreakFix
fix break: contig_1:1768558-1770101 1768337 -1958 +748 BreakFix
# fix break: contig_1:1770560 0 -0 +0 NoSolution
# fix break: contig_1:1770810 0 -0 +0 NoSolution
# fix break: contig_1:1773700 0 -0 +0 NoSolution
# fix break: contig_1:1774304-1774380 0 -0 +0 NoSolution
fix break: contig_1:1775076 1774847 -369 +365 BreakFix
fix break: contig_1:1775464 1775221 -485 +478 BreakFix
# fix break: contig_1:1775835 0 -0 +0 NoSolution
fix break: contig_1:1776680 1776559 -356 +349 BreakFix
# fix break: contig_1:1777145 0 -0 +0 NoSolution
fix break: contig_1:1778573-1778585 1778546 -80 +79 BreakFix
fix break: contig_1:1781043-1781138 1780927 -251 +242 BreakFix
fix break: contig_1:1781513-1781546 1781442 -321 +321 BreakFix
# fix break: contig_1:1782427 0 -0 +0 NoSolution
# fix break: contig_1:1782692 0 -0 +0 NoSolution
fix break: contig_1:1783353 1783112 -466 +464 BreakFix
# fix break: contig_1:1784109-1784111 0 -0 +0 NoSolution
# fix break: contig_1:1784592-1784597 0 -0 +0 NoSolution
# fix break: contig_1:1785658 0 -0 +0 NoSolution
# fix break: contig_1:1786300 0 -0 +0 NoSolution
# fix break: contig_1:1786554 0 -0 +0 NoSolution
fix break: contig_1:1786757 1786544 -391 +385 BreakFix
# fix break: contig_1:1788107 0 -0 +0 NoSolution
fix break: contig_1:1790093 1789888 -431 +429 BreakFix
fix break: contig_1:1790660-1790793 1790499 -417 +448 BreakFix
# fix break: contig_1:1792879-1792966 0 -0 +0 NoSolution
# fix break: contig_1:1793540 0 -0 +0 NoSolution
# fix break: contig_1:1794846-1794913 0 -0 +0 NoSolution
fix break: contig_1:1795239 1795226 -177 +173 BreakFix
# fix break: contig_1:1796441-1796442 0 -0 +0 NoSolution
fix break: contig_1:1798106 1798019 -138 +133 BreakFix
fix break: contig_1:1798599 1798438 -403 +396 BreakFix
# fix break: contig_1:1799662 0 -0 +0 NoSolution
# fix break: contig_1:1799910 0 -0 +0 NoSolution
fix break: contig_1:1800393 1800197 -363 +364 BreakFix
# fix break: contig_1:1801337-1801339 0 -0 +0 NoSolution
# fix break: contig_1:1804296-1804535 0 -0 +0 NoSolution
# fix break: contig_1:1806308-1806926 0 -0 +0 NoSolution
# fix break: contig_1:1808240-1808427 0 -0 +0 NoSolution
# fix break: contig_1:1810575 0 -0 +0 NoSolution
# fix break: contig_1:1811594-1811812 0 -0 +0 NoSolution
# fix break: contig_1:1813393 0 -0 +0 NoSolution
# fix break: contig_1:1813671 0 -0 +0 NoSolution
fix break: contig_1:1814546-1814664 1814371 -385 +382 BreakFix
# fix break: contig_1:1815252-1815321 0 -0 +0 NoSolution
# fix break: contig_1:1816392 0 -0 +0 NoSolution
# fix break: contig_1:1817428 0 -0 +0 NoSolution
# fix break: contig_1:1818697-1818700 0 -0 +0 NoSolution
# fix break: contig_1:1820352-1820367 0 -0 +0 NoSolution
# fix break: contig_1:1820894 0 -0 +0 NoSolution
fix break: contig_1:1821554 1821558 -46 +45 BreakFix
# fix break: contig_1:1822107-1822419 0 -0 +0 NoSolution
# fix break: contig_1:1822670 0 -0 +0 NoSolution
# fix break: contig_1:1823834-1824143 0 -0 +0 NoSolution
# fix break: contig_1:1824402 0 -0 +0 NoSolution
# fix break: contig_1:1825498 0 -0 +0 NoSolution
# fix break: contig_1:1826324-1826717 0 -0 +0 NoSolution
fix break: contig_1:1827490 1827282 -378 +375 BreakFix
fix break: contig_1:1830054-1830074 1829831 -366 +364 BreakFix
# fix break: contig_1:1833406 0 -0 +0 NoSolution
# fix break: contig_1:1834241-1834443 0 -0 +0 NoSolution
fix break: contig_1:1835240 1835035 -438 +431 BreakFix
fix break: contig_1:1836580 1836432 -314 +311 BreakFix
# fix break: contig_1:1838868 0 -0 +0 NoSolution
# fix break: contig_1:1839880 0 -0 +0 NoSolution
# fix break: contig_1:1840875-1841048 0 -0 +0 NoSolution
# fix break: contig_1:1841404 0 -0 +0 NoSolution
fix break: contig_1:1841989-1841991 1841872 -205 +210 BreakFix
# fix break: contig_1:1842559 0 -0 +0 NoSolution
# fix break: contig_1:1843291-1843300 0 -0 +0 NoSolution
# fix break: contig_1:1843824-1845676 0 -0 +0 NoSolution
# fix break: contig_1:1846140 0 -0 +0 NoSolution
# fix break: contig_1:1847571 0 -0 +0 NoSolution
fix break: contig_1:1849698 1849677 -247 +244 BreakFix
# fix break: contig_1:1851239-1851490 0 -0 +0 NoSolution
# fix break: contig_1:1853416 0 -0 +0 NoSolution
fix break: contig_1:1855259-1855354 1855176 -422 +415 BreakFix
fix break: contig_1:1855683-1855697 1855505 -433 +428 BreakFix
# fix break: contig_1:1857597-1857609 0 -0 +0 NoSolution
# fix break: contig_1:1860199 0 -0 +0 NoSolution
# fix break: contig_1:1860603 0 -0 +0 NoSolution
# fix break: contig_1:1861558-1862920 0 -0 +0 NoSolution
fix break: contig_1:1866713-1866722 1866600 -218 +215 BreakFix
# fix break: contig_1:1867014 0 -0 +0 NoSolution
fix break: contig_1:1869381-1869385 1869184 -240 +240 BreakFix
# fix break: contig_1:1869887-1870038 0 -0 +0 NoSolution
fix break: contig_1:1870655-1872268 1870508 -1975 +749 BreakFix
# fix break: contig_1:1872482 0 -0 +0 NoSolution
# fix break: contig_1:1873157-1873365 0 -0 +0 NoSolution
fix break: contig_1:1874197-1874231 1874113 -119 +116 BreakFix
fix break: contig_1:1876750-1876761 1876709 -150 +148 BreakFix
# fix break: contig_1:1877146 0 -0 +0 NoSolution
# fix break: contig_1:1877547-1877587 0 -0 +0 NoSolution
# fix break: contig_1:1877831 0 -0 +0 NoSolution
# fix break: contig_1:1878378 0 -0 +0 NoSolution
# fix break: contig_1:1878587-1878598 0 -0 +0 NoSolution
fix break: contig_1:1878935-1878937 1879094 -78 +77 BreakFix
fix break: contig_1:1879306 1879094 -407 +403 BreakFix
fix break: contig_1:1881509 1881283 -227 +224 BreakFix
fix break: contig_1:1881825 1881829 -195 +192 BreakFix
# fix break: contig_1:1882610-1882613 0 -0 +0 NoSolution
fix break: contig_1:1883316-1883492 1883114 -614 +608 BreakFix
fix break: contig_1:1883896 1883728 -305 +308 BreakFix
# fix break: contig_1:1884168-1884458 0 -0 +0 NoSolution
fix break: contig_1:1887067-1887095 1886839 -332 +328 BreakFix
# fix break: contig_1:1887652-1887874 0 -0 +0 NoSolution
# fix break: contig_1:1888446 0 -0 +0 NoSolution
# fix break: contig_1:1892405-1892605 0 -0 +0 NoSolution
# fix break: contig_1:1892930 0 -0 +0 NoSolution
# fix break: contig_1:1893206-1895346 0 -0 +0 NoSolution
# fix break: contig_1:1896709-1896803 0 -0 +0 NoSolution
# fix break: contig_1:1899084-1899086 0 -0 +0 NoSolution
# fix break: contig_1:1899495-1899642 0 -0 +0 NoSolution
fix break: contig_1:1901042-1901068 1900814 -300 +299 BreakFix
# fix break: contig_1:1901646-1902959 0 -0 +0 NoSolution
# fix break: contig_1:1904293-1909800 0 -0 +0 NoSolution
fix break: contig_1:1910241-1910319 1910282 -179 +173 BreakFix
# fix break: contig_1:1910532-1910978 0 -0 +0 NoSolution
# fix break: contig_1:1911208-1911930 0 -0 +0 NoSolution
# fix break: contig_1:1912696-1912791 0 -0 +0 NoSolution
# fix break: contig_1:1913304 0 -0 +0 NoSolution
fix break: contig_1:1916574-1916598 1916449 -369 +359 BreakFix
# fix break: contig_1:1917130 0 -0 +0 NoSolution
# fix break: contig_1:1917486-1917506 0 -0 +0 NoSolution
# fix break: contig_1:1917784-1918020 0 -0 +0 NoSolution
fix break: contig_1:1918744 1918513 -232 +231 BreakFix
fix break: contig_1:1919601-1919844 1919659 -200 +197 BreakFix
# fix break: contig_1:1921591 0 -0 +0 NoSolution
# fix break: contig_1:1922194-1922501 0 -0 +0 NoSolution
# fix break: contig_1:1922732-1922733 0 -0 +0 NoSolution
fix break: contig_1:1924206-1924218 1924051 -386 +385 BreakFix
fix break: contig_1:1925080 1924846 -235 +233 BreakFix
# fix break: contig_1:1925868-1927435 0 -0 +0 NoSolution
# fix break: contig_1:1927992-1936769 0 -0 +0 NoSolution
# fix break: contig_1:1938279-1938672 0 -0 +0 NoSolution
fix break: contig_1:1939820 1939605 -216 +214 BreakFix
fix break: contig_1:1940975 1940830 -313 +306 BreakFix
# fix break: contig_1:1942335-1942340 0 -0 +0 NoSolution
fix break: contig_1:1942551-1942594 1942555 -197 +192 BreakFix
# fix break: contig_1:1943617-1943716 0 -0 +0 NoSolution
fix break: contig_1:1944139 1943959 -422 +418 BreakFix
fix break: contig_1:1945328 1945102 -462 +462 BreakFix
fix break: contig_1:1945914 1945803 -112 +109 BreakFix
fix break: contig_1:1947194-1947235 1947026 -403 +406 BreakFix
fix break: contig_1:1947984 1947934 -51 +48 BreakFix
fix break: contig_1:1948521-1948603 1948384 -297 +292 BreakFix
fix break: contig_1:1949081-1949958 1948963 -1105 +648 BreakFix
fix break: contig_1:1950957 1950787 -221 +222 BreakFix
fix break: contig_1:1951851-1951854 1951839 -181 +179 BreakFix
fix break: contig_1:1954594-1954629 1954594 -141 +140 BreakFix
# fix break: contig_1:1956281 0 -0 +0 NoSolution
# fix break: contig_1:1956592 0 -0 +0 NoSolution
# fix break: contig_1:1956985-1956986 0 -0 +0 NoSolution
fix break: contig_1:1957282-1958364 1957057 -1214 +1208 BreakFix
# fix break: contig_1:1958953-1959050 0 -0 +0 NoSolution
# fix break: contig_1:1959366 0 -0 +0 NoSolution
fix break: contig_1:1959613-1959679 1959370 -435 +427 BreakFix
# fix break: contig_1:1960473-1960476 0 -0 +0 NoSolution
# fix break: contig_1:1961252-1973697 0 -0 +0 NoSolution
# fix break: contig_1:1974271-1974577 0 -0 +0 NoSolution
# fix break: contig_1:1975644 0 -0 +0 NoSolution
fix break: contig_1:1976127-1976128 1975909 -460 +457 BreakFix
# fix break: contig_1:1976891-1977105 0 -0 +0 NoSolution
# fix break: contig_1:1978022-1978138 0 -0 +0 NoSolution
# fix break: contig_1:1978523-1978780 0 -0 +0 NoSolution
fix break: contig_1:1979517-1979525 1979525 -129 +132 BreakFix
# fix break: contig_1:1979925 0 -0 +0 NoSolution
# fix break: contig_1:1980742 0 -0 +0 NoSolution
# fix break: contig_1:1982932-1983224 0 -0 +0 NoSolution
fix break: contig_1:1985278-1985282 1985056 -357 +354 BreakFix
# fix break: contig_1:1985782 0 -0 +0 NoSolution
fix break: contig_1:1987306-1987307 1987148 -262 +262 BreakFix
fix break: contig_1:1988072 1987847 -376 +373 BreakFix
# fix break: contig_1:1988917-1989215 0 -0 +0 NoSolution
# fix break: contig_1:1989615-1989616 0 -0 +0 NoSolution
fix break: contig_1:1990716 1990561 -398 +392 BreakFix
fix break: contig_1:1992464 1992468 -166 +165 BreakFix
fix break: contig_1:1993077-1993081 1992900 -419 +418 BreakFix
# fix break: contig_1:1993474-1993482 0 -0 +0 NoSolution
# fix break: contig_1:1993833 0 -0 +0 NoSolution
# fix break: contig_1:1994177 0 -0 +0 NoSolution
fix break: contig_1:1994521-1994522 1994497 -135 +130 BreakFix
fix break: contig_1:1999642-1999846 1999415 -518 +696 BreakFix
# fix break: contig_1:2000515 0 -0 +0 NoSolution
# fix break: contig_1:2004987-2005004 0 -0 +0 NoSolution
fix break: contig_1:2005616-2005619 2005556 -60 +58 BreakFix
fix break: contig_1:2006790-2007080 2006790 -517 +449 BreakFix
# fix break: contig_1:2007384-2007682 0 -0 +0 NoSolution
# fix break: contig_1:2007949-2007970 0 -0 +0 NoSolution
fix break: contig_1:2009088 2009092 -165 +159 BreakFix
# fix break: contig_1:2009803-2009828 0 -0 +0 NoSolution
fix break: contig_1:2012339-2012689 2012111 -816 +813 BreakFix
# fix break: contig_1:2013786-2014081 0 -0 +0 NoSolution
fix break: contig_1:2017603 2017400 -436 +432 BreakFix
fix break: contig_1:2021405-2021487 2021189 -483 +483 BreakFix
fix break: contig_1:2022071-2022310 2021964 -571 +321 BreakFix
# fix break: contig_1:2025795-2025901 0 -0 +0 NoSolution
fix break: contig_1:2027089 2027093 -237 +233 BreakFix
fix break: contig_1:2027329-2028099 2027093 -1244 +609 BreakFix
fix break: contig_1:2029462 2029249 -416 +411 BreakFix
fix break: contig_1:2029894-2029900 2029666 -436 +433 BreakFix
# fix break: contig_1:2030338-2031962 0 -0 +0 NoSolution
# fix break: contig_1:2032589 0 -0 +0 NoSolution
# fix break: contig_1:2033039-2033367 0 -0 +0 NoSolution
# fix break: contig_1:2033686-2033984 0 -0 +0 NoSolution
# fix break: contig_1:2034582-2035991 0 -0 +0 NoSolution
# fix break: contig_1:2036614-2036769 0 -0 +0 NoSolution
fix break: contig_1:2037080 2036868 -262 +258 BreakFix
# fix break: contig_1:2038164 0 -0 +0 NoSolution
fix break: contig_1:2038837-2039049 2038747 -303 +289 BreakFix
# fix break: contig_1:2039628 0 -0 +0 NoSolution
fix break: contig_1:2040209 2040072 -364 +363 BreakFix
fix break: contig_1:2043813 2043618 -300 +298 BreakFix
# fix break: contig_1:2044797-2044805 0 -0 +0 NoSolution
fix break: contig_1:2045171-2045273 2045115 -168 +167 BreakFix
fix break: contig_1:2045612 2045611 -240 +237 BreakFix
fix break: contig_1:2046315-2046330 2046121 -401 +398 BreakFix
# fix break: contig_1:2047535 0 -0 +0 NoSolution
fix break: contig_1:2048245 2048217 -210 +205 BreakFix
# fix break: contig_1:2048879 0 -0 +0 NoSolution
# fix break: contig_1:2049716 0 -0 +0 NoSolution
# fix break: contig_1:2050527-2050704 0 -0 +0 NoSolution
# fix break: contig_1:2050993 0 -0 +0 NoSolution
fix break: contig_1:2052012-2052013 2051831 -330 +328 BreakFix
# fix break: contig_1:2052832-2054578 0 -0 +0 NoSolution
# fix break: contig_1:2055248-2055490 0 -0 +0 NoSolution
# fix break: contig_1:2056818-2056821 0 -0 +0 NoSolution
# fix break: contig_1:2058035-2061400 0 -0 +0 NoSolution
fix break: contig_1:2061947-2061999 2061790 -442 +447 BreakFix
# fix break: contig_1:2062249-2062672 0 -0 +0 NoSolution
# fix break: contig_1:2062945-2063098 0 -0 +0 NoSolution
# fix break: contig_1:2063805 0 -0 +0 NoSolution
# fix break: contig_1:2064073-2064081 0 -0 +0 NoSolution
# fix break: contig_1:2064309-2064643 0 -0 +0 NoSolution TandemRepeat 608
# fix break: contig_1:2065199-2065201 0 -0 +0 NoSolution TandemRepeat 608
# fix break: contig_1:2065806-2066599 0 -0 +0 NoSolution TandemRepeat 608
# fix break: contig_1:2066918-2066922 0 -0 +0 NoSolution
# fix break: contig_1:2067688-2067696 0 -0 +0 NoSolution
# fix break: contig_1:2068093-2068190 0 -0 +0 NoSolution
fix break: contig_1:2069306-2069387 2069103 -499 +494 BreakFix
fix break: contig_1:2070378-2070379 2070215 -323 +325 BreakFix
fix break: contig_1:2071025-2071036 2070786 -54 +51 BreakFix
fix break: contig_1:2071465-2071530 2071468 -297 +297 BreakFix
# fix break: contig_1:2072452-2072456 0 -0 +0 NoSolution
# fix break: contig_1:2073316-2073372 0 -0 +0 NoSolution
# fix break: contig_1:2073638 0 -0 +0 NoSolution
fix break: contig_1:2075458-2075461 2075260 -411 +410 BreakFix
fix break: contig_1:2075670 2075458 -213 +211 BreakFix
# fix break: contig_1:2076399-2076724 0 -0 +0 NoSolution
fix break: contig_1:2081313-2081374 2081078 -518 +551 BreakFix
# fix break: contig_1:2081595 0 -0 +0 NoSolution
# fix break: contig_1:2081957 0 -0 +0 NoSolution
fix break: contig_1:2082999 2082952 -48 +45 BreakFix
fix break: contig_1:2085570-2085656 2085380 -360 +360 BreakFix
fix break: contig_1:2086498 2086303 -436 +433 BreakFix
# fix break: contig_1:2087417-2087425 0 -0 +0 NoSolution
# fix break: contig_1:2088429-2088433 0 -0 +0 NoSolution
# fix break: contig_1:2089184 0 -0 +0 NoSolution
# fix break: contig_1:2089676-2089693 0 -0 +0 NoSolution
# fix break: contig_1:2090586-2091296 0 -0 +0 NoSolution
# fix break: contig_1:2094750 0 -0 +0 NoSolution
# fix break: contig_1:2095582-2095761 0 -0 +0 NoSolution
fix break: contig_1:2098315-2098384 2098153 -230 +113 BreakFix
# fix break: contig_1:2099548 0 -0 +0 NoSolution
# fix break: contig_1:2099849 0 -0 +0 NoSolution
# fix break: contig_1:2105578 0 -0 +0 NoSolution
# fix break: contig_1:2106675 0 -0 +0 NoSolution
fix break: contig_1:2106985-2107020 2106800 -374 +359 BreakFix
fix break: contig_1:2107738-2107823 2107910 -157 +155 BreakFix
# fix break: contig_1:2108399-2108424 0 -0 +0 NoSolution
fix break: contig_1:2108639-2108796 2108414 -418 +415 BreakFix
fix break: contig_1:2110314 2110205 -277 +271 BreakFix
fix break: contig_1:2114553-2114728 2114411 -408 +351 BreakFix
fix break: contig_1:2115016-2115018 2114774 -468 +466 BreakFix
fix break: contig_1:2115487-2115698 2115244 -652 +646 BreakFix
# fix break: contig_1:2116980 0 -0 +0 NoSolution
# fix break: contig_1:2117497 0 -0 +0 NoSolution
# fix break: contig_1:2119211-2119791 0 -0 +0 NoSolution
# fix break: contig_1:2120572-2120628 0 -0 +0 NoSolution
fix break: contig_1:2121026 2120813 -430 +428 BreakFix
# fix break: contig_1:2121648-2121841 0 -0 +0 NoSolution
# fix break: contig_1:2125817-2126235 0 -0 +0 NoSolution
fix break: contig_1:2127422 2127209 -214 +213 BreakFix
fix break: contig_1:2130395-2130401 2130335 -65 +63 BreakFix
# fix break: contig_1:2131408-2131576 0 -0 +0 NoSolution
fix break: contig_1:2133069 2132844 -347 +345 BreakFix
fix break: contig_1:2133630 2133435 -196 +195 BreakFix
fix break: contig_1:2135971-2136007 2135801 -381 +380 BreakFix
fix break: contig_1:2138080-2138081 2137941 -325 +318 BreakFix
fix break: contig_1:2138502 2138268 -235 +231 BreakFix
# fix break: contig_1:2139866 0 -0 +0 NoSolution
fix break: contig_1:2141040-2141341 2140948 -239 +237 BreakFix
fix break: contig_1:2142686-2142691 2142446 -461 +455 BreakFix
fix break: contig_1:2143347 2143124 -464 +459 BreakFix
# fix break: contig_1:2143727 0 -0 +0 NoSolution
# fix break: contig_1:2145112 0 -0 +0 NoSolution
# fix break: contig_1:2148076-2148405 0 -0 +0 NoSolution
# fix break: contig_1:2148853 0 -0 +0 NoSolution
# fix break: contig_1:2149600-2150016 0 -0 +0 NoSolution
# fix break: contig_1:2150327-2152318 0 -0 +0 NoSolution
fix break: contig_1:2153263-2153374 2153023 -474 +468 BreakFix
fix break: contig_1:2155226 2154999 -228 +227 BreakFix
# fix break: contig_1:2156586 0 -0 +0 NoSolution
fix break: contig_1:2157571-2157653 2157551 -309 +305 BreakFix
# fix break: contig_1:2158366 0 -0 +0 NoSolution
# fix break: contig_1:2161360 0 -0 +0 NoSolution
# fix break: contig_1:2164988-2164992 0 -0 +0 NoSolution
# fix break: contig_1:2165264-2165272 0 -0 +0 NoSolution TandemRepeat 226
# fix break: contig_1:2166466-2166959 0 -0 +0 NoSolution TandemRepeat 226
# fix break: contig_1:2167308-2167315 0 -0 +0 NoSolution TandemRepeat 226
# fix break: contig_1:2168326 0 -0 +0 NoSolution TandemRepeat 226
# fix break: contig_1:2168653-2169052 0 -0 +0 NoSolution
# fix break: contig_1:2169474 0 -0 +0 NoSolution
fix break: contig_1:2171365-2171383 2171219 -84 +83 BreakFix
# fix break: contig_1:2172134-2172145 0 -0 +0 NoSolution
fix break: contig_1:2172574-2172583 2172350 -418 +421 BreakFix
# fix break: contig_1:2173649-2174568 0 -0 +0 NoSolution
# fix break: contig_1:2176192 0 -0 +0 NoSolution
# fix break: contig_1:2176462-2176463 0 -0 +0 NoSolution
# fix break: contig_1:2177723-2177730 0 -0 +0 NoSolution
# fix break: contig_1:2178828-2178928 0 -0 +0 NoSolution
fix break: contig_1:2180832-2181002 2180806 -294 +292 BreakFix
fix break: contig_1:2181810-2189604 2181567 -8263 +1007 BreakFix
# fix break: contig_1:2190004 0 -0 +0 NoSolution
fix break: contig_1:2190369-2190536 2190220 -556 +556 BreakFix
# fix break: contig_1:2193330 0 -0 +0 NoSolution
fix break: contig_1:2195424 2195428 -223 +220 BreakFix
# fix break: contig_1:2195640-2195650 0 -0 +0 NoSolution
# fix break: contig_1:2196342-2196524 0 -0 +0 NoSolution
# fix break: contig_1:2197857-2197863 0 -0 +0 NoSolution
fix break: contig_1:2199159 2198957 -203 +198 BreakFix
# fix break: contig_1:2199474 0 -0 +0 NoSolution
# fix break: contig_1:2201764 0 -0 +0 NoSolution
# fix break: contig_1:2202338-2202788 0 -0 +0 NoSolution
# fix break: contig_1:2203845-2203847 0 -0 +0 NoSolution
fix break: contig_1:2204327-2204378 2204216 -297 +298 BreakFix
# fix break: contig_1:2205529-2205879 0 -0 +0 NoSolution
fix break: contig_1:2208334 2208197 -284 +287 BreakFix
# fix break: contig_1:2208865-2208875 0 -0 +0 NoSolution
# fix break: contig_1:2209626-2209742 0 -0 +0 NoSolution
# fix break: contig_1:2211576-2212115 0 -0 +0 NoSolution
fix break: contig_1:2212511-2212584 2212457 -248 +243 BreakFix
# fix break: contig_1:2213554-2213556 0 -0 +0 NoSolution
# fix break: contig_1:2213830 0 -0 +0 NoSolution
# fix break: contig_1:2214164 0 -0 +0 NoSolution
# fix break: contig_1:2214436 0 -0 +0 NoSolution
fix break: contig_1:2214801 2214682 -334 +325 BreakFix
fix break: contig_1:2216086 2216085 -195 +192 BreakFix
# fix break: contig_1:2216769 0 -0 +0 NoSolution
fix break: contig_1:2217901-2217903 2217895 -207 +207 BreakFix
# fix break: contig_1:2219753-2220072 0 -0 +0 NoSolution
# fix break: contig_1:2221898 0 -0 +0 NoSolution
fix break: contig_1:2222232 2222050 -183 +179 BreakFix
# fix break: contig_1:2223473 0 -0 +0 NoSolution
# fix break: contig_1:2223945 0 -0 +0 NoSolution
fix break: contig_1:2224155-2224157 2223949 -439 +433 BreakFix
fix break: contig_1:2225066 2224930 -364 +361 BreakFix
fix break: contig_1:2227305 2227153 -363 +358 BreakFix
fix break: contig_1:2228082 2227885 -395 +389 BreakFix
# fix break: contig_1:2228737-2228738 0 -0 +0 NoSolution
# fix break: contig_1:2229763-2229866 0 -0 +0 NoSolution
fix break: contig_1:2230284 2230156 -289 +284 BreakFix
fix break: contig_1:2231806 2231581 -285 +280 BreakFix
fix break: contig_1:2233382 2233172 -238 +234 BreakFix
# fix break: contig_1:2234266-2234331 0 -0 +0 NoSolution
fix break: contig_1:2235898-2235928 2235713 -454 +451 BreakFix
fix break: contig_1:2237428 2237321 -347 +341 BreakFix
fix break: contig_1:2239391-2239395 2239199 -312 +311 BreakFix
# fix break: contig_1:2239757-2239772 0 -0 +0 NoSolution
fix break: contig_1:2240853-2240895 2240715 -279 +278 BreakFix
# fix break: contig_1:2241183 0 -0 +0 NoSolution
# fix break: contig_1:2242894-2242895 0 -0 +0 NoSolution
# fix break: contig_1:2243119 0 -0 +0 NoSolution
fix break: contig_1:2243605 2243609 -238 +237 BreakFix
fix break: contig_1:2244236-2244249 2244048 -397 +398 BreakFix
# fix break: contig_1:2244708-2245428 0 -0 +0 NoSolution
# fix break: contig_1:2245742-2245846 0 -0 +0 NoSolution
# fix break: contig_1:2246103-2248973 0 -0 +0 NoSolution
# fix break: contig_1:2249185 0 -0 +0 NoSolution
# fix break: contig_1:2249436-2252485 0 -0 +0 NoSolution
# fix break: contig_1:2254574-2254575 0 -0 +0 NoSolution
# fix break: contig_1:2254990 0 -0 +0 NoSolution
fix break: contig_1:2258471 2258234 -238 +235 BreakFix
fix break: contig_1:2260601-2260607 2260433 -329 +328 BreakFix
fix break: contig_1:2264476-2264496 2264334 -262 +259 BreakFix
fix break: contig_1:2266430-2266431 2266369 -267 +260 BreakFix
# fix break: contig_1:2267921-2267949 0 -0 +0 NoSolution
# fix break: contig_1:2268204-2268206 0 -0 +0 NoSolution
fix break: contig_1:2269904 2269664 -369 +369 BreakFix
# fix break: contig_1:2270968 0 -0 +0 NoSolution
fix break: contig_1:2271581 2271341 -481 +479 BreakFix
fix break: contig_1:2272742 2272619 -124 +121 BreakFix
fix break: contig_1:2274417 2274174 -332 +332 BreakFix
fix break: contig_1:2276980 2276979 -34 +31 BreakFix
# fix break: contig_1:2280344-2280349 0 -0 +0 NoSolution
# fix break: contig_1:2281295-2281308 0 -0 +0 NoSolution
fix break: contig_1:2286923 2286711 -359 +353 BreakFix
# fix break: contig_1:2289273 0 -0 +0 NoSolution
fix break: contig_1:2289623-2289627 2289538 -210 +205 BreakFix
# fix break: contig_1:2290855 0 -0 +0 NoSolution
# fix break: contig_1:2292145-2292271 0 -0 +0 NoSolution TandemRepeat 91
# fix break: contig_1:2292636 0 -0 +0 NoSolution TandemRepeat 91
# fix break: contig_1:2293235-2293489 0 -0 +0 NoSolution TandemRepeat 91
# fix break: contig_1:2294304 0 -0 +0 NoSolution TandemRepeat 91
# fix break: contig_1:2294751 0 -0 +0 NoSolution TandemRepeat 91
fix break: contig_1:2295046-2295050 2295046 -232 +229 BreakFix
fix break: contig_1:2296487-2296488 2296306 -223 +217 BreakFix
fix break: contig_1:2296827 2296826 -228 +224 BreakFix
fix break: contig_1:2298610-2298621 2298568 -281 +281 BreakFix
# fix break: contig_1:2299246 0 -0 +0 NoSolution
fix break: contig_1:2299484-2299550 2299250 -284 +284 BreakFix
# fix break: contig_1:2300008-2300417 0 -0 +0 NoSolution
# fix break: contig_1:2300880 0 -0 +0 NoSolution
# fix break: contig_1:2301144 0 -0 +0 NoSolution
fix break: contig_1:2302508 2302312 -378 +371 BreakFix
# fix break: contig_1:2302791-2302833 0 -0 +0 NoSolution
fix break: contig_1:2303394 2303360 -233 +229 BreakFix
fix break: contig_1:2304287-2304327 2304161 -380 +376 BreakFix
# fix break: contig_1:2305620-2305636 0 -0 +0 NoSolution
fix break: contig_1:2306002-2306065 2306025 -41 +40 BreakFix
# fix break: contig_1:2309178-2309360 0 -0 +0 NoSolution
fix break: contig_1:2309999-2310011 2309786 -458 +455 BreakFix
fix break: contig_1:2310877-2311000 2310866 -356 +351 BreakFix
# fix break: contig_1:2311219-2319003 0 -0 +0 NoSolution
# fix break: contig_1:2321980-2321986 0 -0 +0 NoSolution
fix break: contig_1:2323574-2323602 2323415 -253 +246 BreakFix
fix break: contig_1:2324426-2324438 2324491 -166 +163 BreakFix
# fix break: contig_1:2325400-2325412 0 -0 +0 NoSolution
# fix break: contig_1:2326103 0 -0 +0 NoSolution
fix break: contig_1:2326455-2326626 2326245 -593 +587 BreakFix
# fix break: contig_1:2328745-2334835 0 -0 +0 NoSolution
# fix break: contig_1:2335419-2336361 0 -0 +0 NoSolution
# fix break: contig_1:2337568 0 -0 +0 NoSolution
# fix break: contig_1:2338046-2341723 0 -0 +0 NoSolution
# fix break: contig_1:2342201-2342213 0 -0 +0 NoSolution
# fix break: contig_1:2343186 0 -0 +0 NoSolution
# fix break: contig_1:2343653 0 -0 +0 NoSolution
# fix break: contig_1:2346003-2347645 0 -0 +0 NoSolution
# fix break: contig_1:2347856-2349535 0 -0 +0 NoSolution
fix break: contig_1:2349868-2350955 2349890 -1272 +1262 BreakFix
fix break: contig_1:2352538-2352539 2352538 -87 +86 BreakFix
# fix break: contig_1:2353555 0 -0 +0 NoSolution
fix break: contig_1:2354668 2354447 -413 +405 BreakFix
fix break: contig_1:2355019 2354863 -157 +152 BreakFix
# fix break: contig_1:2356019-2356027 0 -0 +0 NoSolution
# fix break: contig_1:2356428 0 -0 +0 NoSolution
fix break: contig_1:2357587 2357397 -254 +247 BreakFix
fix break: contig_1:2358092-2358150 2358040 -351 +343 BreakFix
fix break: contig_1:2359440-2359737 2359256 -721 +716 BreakFix
# fix break: contig_1:2359978-2359983 0 -0 +0 NoSolution
# fix break: contig_1:2361144-2361174 0 -0 +0 NoSolution
fix break: contig_1:2361528-2361532 2361330 -412 +411 BreakFix
# fix break: contig_1:2362250-2362265 0 -0 +0 NoSolution
# fix break: contig_1:2363281 0 -0 +0 NoSolution
# fix break: contig_1:2363621 0 -0 +0 NoSolution
# fix break: contig_1:2364835 0 -0 +0 NoSolution
fix break: contig_1:2365165-2365167 2365165 -208 +207 BreakFix
fix break: contig_1:2366319-2366417 2366319 -196 +193 BreakFix
fix break: contig_1:2367641 2367645 -21 +18 BreakFix
fix break: contig_1:2369179-2369247 2369011 -412 +407 BreakFix
fix break: contig_1:2369715-2369720 2369544 -172 +170 BreakFix
# fix break: contig_1:2370241-2370597 0 -0 +0 NoSolution
fix break: contig_1:2371183-2371249 2370994 -370 +363 BreakFix
fix break: contig_1:2372282-2372283 2372282 -68 +68 BreakFix
fix break: contig_1:2373041 2372881 -368 +363 BreakFix
# fix break: contig_1:2374127-2374140 0 -0 +0 NoSolution
# fix break: contig_1:2375279 0 -0 +0 NoSolution
# fix break: contig_1:2375746 0 -0 +0 NoSolution
# fix break: contig_1:2376056 0 -0 +0 NoSolution
# fix break: contig_1:2376963-2378512 0 -0 +0 NoSolution
# fix break: contig_1:2380763 0 -0 +0 NoSolution TandemRepeat 115
# fix break: contig_1:2381165 0 -0 +0 NoSolution TandemRepeat 115
# fix break: contig_1:2381574-2381764 0 -0 +0 NoSolution TandemRepeat 115
# fix break: contig_1:2381975-2382170 0 -0 +0 NoSolution TandemRepeat 115
# fix break: contig_1:2383029 0 -0 +0 NoSolution TandemRepeat 120
# fix break: contig_1:2383329-2383575 0 -0 +0 NoSolution TandemRepeat 120
# fix break: contig_1:2383970-2384348 0 -0 +0 NoSolution TandemRepeat 120
# fix break: contig_1:2385658 0 -0 +0 NoSolution
fix break: contig_1:2386221 2386019 -394 +389 BreakFix
fix break: contig_1:2388738 2388530 -218 +214 BreakFix
fix break: contig_1:2391051 2390956 -96 +93 BreakFix
# fix break: contig_1:2392826 0 -0 +0 NoSolution
fix break: contig_1:2393472 2393476 -106 +103 BreakFix
fix break: contig_1:2393769-2393774 2393584 -337 +346 BreakFix
# fix break: contig_1:2394728-2394950 0 -0 +0 NoSolution
fix break: contig_1:2395336 2395184 -153 +152 BreakFix
# fix break: contig_1:2396597 0 -0 +0 NoSolution
# fix break: contig_1:2399016-2401155 0 -0 +0 NoSolution
fix break: contig_1:2401897-2403058 2401944 -1016 +48 BreakFix
# fix break: contig_1:2405455 0 -0 +0 NoSolution
# fix break: contig_1:2406796-2406889 0 -0 +0 NoSolution
# fix break: contig_1:2407942-2408092 0 -0 +0 NoSolution
# fix break: contig_1:2409806-2409810 0 -0 +0 NoSolution
# fix break: contig_1:2410442-2410831 0 -0 +0 NoSolution
fix break: contig_1:2412064-2412216 2412016 -347 +346 BreakFix
# fix break: contig_1:2412706-2412917 0 -0 +0 NoSolution
# fix break: contig_1:2413161 0 -0 +0 NoSolution
fix break: contig_1:2413751-2413910 2413512 -430 +244 BreakFix
fix break: contig_1:2415001 2414938 -300 +298 BreakFix
# fix break: contig_1:2416876 0 -0 +0 NoSolution
fix break: contig_1:2419106-2419165 2418933 -435 +432 BreakFix
fix break: contig_1:2420255-2420257 2420207 -271 +269 BreakFix
fix break: contig_1:2422777 2422553 -394 +387 BreakFix
# fix break: contig_1:2423477 0 -0 +0 NoSolution
fix break: contig_1:2423964-2424265 2423729 -688 +681 BreakFix
# fix break: contig_1:2425800-2425851 0 -0 +0 NoSolution
# fix break: contig_1:2428139-2428146 0 -0 +0 NoSolution
# fix break: contig_1:2428375-2428518 0 -0 +0 NoSolution
fix break: contig_1:2430816 2430662 -306 +301 BreakFix
fix break: contig_1:2432288-2432364 2432289 -317 +313 BreakFix
fix break: contig_1:2433028 2432846 -286 +280 BreakFix
fix break: contig_1:2433541-2433609 2433329 -382 +381 BreakFix
fix break: contig_1:2434188-2434289 2434055 -235 +232 BreakFix
# fix break: contig_1:2435045-2435055 0 -0 +0 NoSolution
# fix break: contig_1:2436802 0 -0 +0 NoSolution
fix break: contig_1:2438381-2438388 2438186 -434 +430 BreakFix
# fix break: contig_1:2439040-2439396 0 -0 +0 NoSolution
fix break: contig_1:2440540 2440337 -390 +386 BreakFix
fix break: contig_1:2444599 2444445 -350 +351 BreakFix
fix break: contig_1:2445217 2445076 -369 +364 BreakFix
# fix break: contig_1:2446317 0 -0 +0 NoSolution
# fix break: contig_1:2448788 0 -0 +0 NoSolution
# fix break: contig_1:2449268-2449440 0 -0 +0 NoSolution
fix break: contig_1:2451695 2451602 -147 +142 BreakFix
# fix break: contig_1:2454555-2454569 0 -0 +0 NoSolution
fix break: contig_1:2454959 2454724 -236 +235 BreakFix
# fix break: contig_1:2455685-2455794 0 -0 +0 NoSolution
# fix break: contig_1:2456199 0 -0 +0 NoSolution
# fix break: contig_1:2459040 0 -0 +0 NoSolution
# fix break: contig_1:2459271 0 -0 +0 NoSolution
# fix break: contig_1:2459483 0 -0 +0 NoSolution
fix break: contig_1:2461306 2461260 -234 +228 BreakFix
# fix break: contig_1:2462193 0 -0 +0 NoSolution
fix break: contig_1:2462423 2462197 -432 +425 BreakFix
fix break: contig_1:2463126 2462995 -256 +253 BreakFix
# fix break: contig_1:2463600 0 -0 +0 NoSolution
# fix break: contig_1:2465595 0 -0 +0 NoSolution
fix break: contig_1:2465897 2465746 -288 +285 BreakFix
fix break: contig_1:2467184 2467045 -323 +317 BreakFix
fix break: contig_1:2470065-2470075 2469871 -369 +368 BreakFix
fix break: contig_1:2472409-2472411 2472195 -446 +448 BreakFix
fix break: contig_1:2472642-2472649 2472409 -452 +453 BreakFix
fix break: contig_1:2476329 2476195 -310 +309 BreakFix
fix break: contig_1:2476639 2476509 -338 +338 BreakFix
fix break: contig_1:2477519-2477536 2477291 -488 +482 BreakFix
fix break: contig_1:2478472 2478243 -469 +469 BreakFix
# fix break: contig_1:2478974 0 -0 +0 NoSolution
fix break: contig_1:2483319-2483482 2483095 -552 +545 BreakFix
# fix break: contig_1:2486483-2486792 0 -0 +0 NoSolution
# fix break: contig_1:2488228 0 -0 +0 NoSolution
fix break: contig_1:2491309 2491196 -294 +293 BreakFix
fix break: contig_1:2492273-2492278 2492034 -466 +467 BreakFix
# fix break: contig_1:2493765 0 -0 +0 NoSolution
fix break: contig_1:2494313 2494107 -429 +427 BreakFix
fix break: contig_1:2495248-2495450 2495013 -563 +558 BreakFix
# fix break: contig_1:2496810 0 -0 +0 NoSolution
fix break: contig_1:2497180-2497185 2496950 -259 +258 BreakFix
# fix break: contig_1:2499105 0 -0 +0 NoSolution
fix break: contig_1:2499720-2499794 2499571 -467 +457 BreakFix
# fix break: contig_1:2501794 0 -0 +0 NoSolution
fix break: contig_1:2502158 2502079 -255 +255 BreakFix
# fix break: contig_1:2504716 0 -0 +0 NoSolution
# fix break: contig_1:2505514 0 -0 +0 NoSolution
fix break: contig_1:2508622-2508676 2508547 -348 +349 BreakFix
# fix break: contig_1:2510192-2510237 0 -0 +0 NoSolution
# fix break: contig_1:2511377-2511896 0 -0 +0 NoSolution
# fix break: contig_1:2512481-2512491 0 -0 +0 NoSolution
fix break: contig_1:2512890-2512958 2512673 -430 +433 BreakFix
# fix break: contig_1:2513734-2513765 0 -0 +0 NoSolution
# fix break: contig_1:2514325-2514335 0 -0 +0 NoSolution
# fix break: contig_1:2517500 0 -0 +0 NoSolution
# fix break: contig_1:2517893 0 -0 +0 NoSolution
# fix break: contig_1:2519749 0 -0 +0 NoSolution
fix break: contig_1:2520319-2520525 2520166 -461 +277 BreakFix
fix break: contig_1:2521174-2521178 2520963 -345 +341 BreakFix
# fix break: contig_1:2522168-2522792 0 -0 +0 NoSolution
# fix break: contig_1:2523332 0 -0 +0 NoSolution
# fix break: contig_1:2525791 0 -0 +0 NoSolution
# fix break: contig_1:2527212 0 -0 +0 NoSolution
fix break: contig_1:2528615-2528679 2528610 -285 +283 BreakFix
fix break: contig_1:2529920 2529702 -387 +383 BreakFix
# fix break: contig_1:2530544-2530587 0 -0 +0 NoSolution
fix break: contig_1:2531292 2531216 -274 +270 BreakFix
# fix break: contig_1:2531758-2531767 0 -0 +0 NoSolution
# fix break: contig_1:2532620-2532633 0 -0 +0 NoSolution
# fix break: contig_1:2532868-2532885 0 -0 +0 NoSolution
# fix break: contig_1:2534554 0 -0 +0 NoSolution
fix break: contig_1:2536383 2536287 -271 +266 BreakFix
fix break: contig_1:2536687-2536793 2536559 -439 +433 BreakFix
fix break: contig_1:2537545-2537749 2537481 -323 +316 BreakFix
fix break: contig_1:2539095-2539228 2538864 -397 +395 BreakFix
fix break: contig_1:2540053 2539841 -418 +420 BreakFix
# fix break: contig_1:2543113 0 -0 +0 NoSolution
# fix break: contig_1:2543527 0 -0 +0 NoSolution
fix break: contig_1:2544050 2543812 -351 +349 BreakFix
# fix break: contig_1:2545439-2545500 0 -0 +0 NoSolution
# fix break: contig_1:2545766-2545778 0 -0 +0 NoSolution
fix break: contig_1:2546173-2546182 2545997 -428 +424 BreakFix
fix break: contig_1:2546426-2546427 2546240 -185 +183 BreakFix
# fix break: contig_1:2547634-2547794 0 -0 +0 NoSolution
fix break: contig_1:2548967-2549118 2549116 -215 +215 BreakFix
# fix break: contig_1:2549725-2549766 0 -0 +0 NoSolution
# fix break: contig_1:2550418-2550426 0 -0 +0 NoSolution
fix break: contig_1:2552409-2552418 2552223 -262 +261 BreakFix
fix break: contig_1:2553041-2553053 2552948 -304 +301 BreakFix
fix break: contig_1:2555461-2555462 2555308 -222 +225 BreakFix
# fix break: contig_1:2557788-2557917 0 -0 +0 NoSolution
fix break: contig_1:2558143-2558145 2558283 -58 +55 BreakFix
fix break: contig_1:2559548-2559556 2559385 -232 +226 BreakFix
# fix break: contig_1:2561110-2561121 0 -0 +0 NoSolution
fix break: contig_1:2562245-2562358 2562052 -435 +433 BreakFix
fix break: contig_1:2564011 2563839 -173 +170 BreakFix
# fix break: contig_1:2564228-2564428 0 -0 +0 NoSolution
fix break: contig_1:2565334-2565534 2565245 -290 +284 BreakFix
fix break: contig_1:2565946 2565840 -107 +105 BreakFix
# fix break: contig_1:2566557-2566560 0 -0 +0 NoSolution
fix break: contig_1:2567952 2567808 -368 +362 BreakFix
# fix break: contig_1:2568175-2568179 0 -0 +0 NoSolution
# fix break: contig_1:2569986-2570027 0 -0 +0 NoSolution
# fix break: contig_1:2570471 0 -0 +0 NoSolution
fix break: contig_1:2570863-2570990 2570639 -352 +346 BreakFix
# fix break: contig_1:2572188-2572208 0 -0 +0 NoSolution
fix break: contig_1:2572825-2572885 2572902 -205 +201 BreakFix
# fix break: contig_1:2575416 0 -0 +0 NoSolution
# fix break: contig_1:2577432 0 -0 +0 NoSolution
# fix break: contig_1:2577700-2577760 0 -0 +0 NoSolution
# fix break: contig_1:2578120 0 -0 +0 NoSolution
# fix break: contig_1:2579211-2579302 0 -0 +0 NoSolution
# fix break: contig_1:2584264-2585787 0 -0 +0 NoSolution
# fix break: contig_1:2586032-2587043 0 -0 +0 NoSolution
# fix break: contig_1:2587263-2588725 0 -0 +0 NoSolution
# fix break: contig_1:2589115-2589190 0 -0 +0 NoSolution
# fix break: contig_1:2589430-2589856 0 -0 +0 NoSolution
# fix break: contig_1:2590965-2590969 0 -0 +0 NoSolution
# fix break: contig_1:2593732-2593753 0 -0 +0 NoSolution
fix break: contig_1:2594022 2593879 -379 +376 BreakFix
fix break: contig_1:2595527 2595307 -266 +263 BreakFix
# fix break: contig_1:2597573-2597751 0 -0 +0 NoSolution
# fix break: contig_1:2598062-2598087 0 -0 +0 NoSolution
# fix break: contig_1:2599592-2599661 0 -0 +0 NoSolution
# fix break: contig_1:2600081-2600107 0 -0 +0 NoSolution
# fix break: contig_1:2603004-2603005 0 -0 +0 NoSolution
# fix break: contig_1:2603691 0 -0 +0 NoSolution
# fix break: contig_1:2604408-2604776 0 -0 +0 NoSolution
# fix break: contig_1:2605802 0 -0 +0 NoSolution
# fix break: contig_1:2606127-2606162 0 -0 +0 NoSolution
fix break: contig_1:2606597-2606916 2606365 -728 +733 BreakFix
fix break: contig_1:2607462 2607244 -454 +449 BreakFix
# fix break: contig_1:2609324-2609330 0 -0 +0 NoSolution
fix break: contig_1:2610527-2610528 2610284 -447 +446 BreakFix
fix break: contig_1:2612175-2612349 2612006 -508 +496 BreakFix
# fix break: contig_1:2613574 0 -0 +0 NoSolution
# fix break: contig_1:2614109-2614567 0 -0 +0 NoSolution
# fix break: contig_1:2614835-2614836 0 -0 +0 NoSolution
# fix break: contig_1:2615089-2636676 0 -0 +0 NoSolution
# fix break: contig_1:2636957-2636960 0 -0 +0 NoSolution
# fix break: contig_1:2637178-2637195 0 -0 +0 NoSolution
# fix break: contig_1:2637468-2637535 0 -0 +0 NoSolution
# fix break: contig_1:2637834 0 -0 +0 NoSolution
# fix break: contig_1:2638928-2639523 0 -0 +0 NoSolution
# fix break: contig_1:2640565-2640707 0 -0 +0 NoSolution
# fix break: contig_1:2641045-2641054 0 -0 +0 NoSolution
# fix break: contig_1:2642208-2643377 0 -0 +0 NoSolution
# fix break: contig_1:2643611-2644346 0 -0 +0 NoSolution
# fix break: contig_1:2644922 0 -0 +0 NoSolution
# fix break: contig_1:2645871-2646090 0 -0 +0 NoSolution
fix break: contig_1:2646962-2647388 2646754 -857 +847 BreakFix
# fix break: contig_1:2647897-2647919 0 -0 +0 NoSolution
# fix break: contig_1:2648475-2648478 0 -0 +0 NoSolution
# fix break: contig_1:2649839-2650088 0 -0 +0 NoSolution
# fix break: contig_1:2650599-2650605 0 -0 +0 NoSolution
# fix break: contig_1:2650939 0 -0 +0 NoSolution TandemRepeat 89
# fix break: contig_1:2651739-2651750 0 -0 +0 NoSolution TandemRepeat 89
# fix break: contig_1:2652372-2652606 0 -0 +0 NoSolution TandemRepeat 89
# fix break: contig_1:2653435-2653441 0 -0 +0 NoSolution TandemRepeat 89
# fix break: contig_1:2656860 0 -0 +0 NoSolution
fix break: contig_1:2657294-2657507 2657142 -469 +462 BreakFix
# fix break: contig_1:2658798-2658895 0 -0 +0 NoSolution
fix break: contig_1:2659947-2659959 2659767 -422 +418 BreakFix
# fix break: contig_1:2662619-2662630 0 -0 +0 NoSolution
# fix break: contig_1:2663329-2663333 0 -0 +0 NoSolution
fix break: contig_1:2663738-2663739 2663613 -320 +317 BreakFix
fix break: contig_1:2666341 2666253 -89 +88 BreakFix
# fix break: contig_1:2666547-2667092 0 -0 +0 NoSolution
fix break: contig_1:2667923-2667925 2667735 -416 +416 BreakFix
fix break: contig_1:2668467 2668225 -403 +400 BreakFix
fix break: contig_1:2669350 2669296 -277 +271 BreakFix
# fix break: contig_1:2669572-2669643 0 -0 +0 NoSolution
fix break: contig_1:2670727 2670577 -391 +387 BreakFix
fix break: contig_1:2674914 2674998 -125 +126 BreakFix
# fix break: contig_1:2676060-2676464 0 -0 +0 NoSolution TandemRepeat 139
# fix break: contig_1:2676956-2676971 0 -0 +0 NoSolution TandemRepeat 139
# fix break: contig_1:2677211-2677555 0 -0 +0 NoSolution TandemRepeat 139
# fix break: contig_1:2678324-2678330 0 -0 +0 NoSolution TandemRepeat 139
# fix break: contig_1:2680201 0 -0 +0 NoSolution
# fix break: contig_1:2680477-2680519 0 -0 +0 NoSolution
# fix break: contig_1:2680877 0 -0 +0 NoSolution
# fix break: contig_1:2683271-2683275 0 -0 +0 NoSolution
fix break: contig_1:2683590-2683623 2683631 -152 +150 BreakFix
fix break: contig_1:2684173-2684274 2683948 -508 +497 BreakFix
# fix break: contig_1:2684908 0 -0 +0 NoSolution
fix break: contig_1:2685426-2685439 2685386 -120 +119 BreakFix
fix break: contig_1:2687473-2687480 2687277 -399 +396 BreakFix
fix break: contig_1:2690520 2690296 -225 +223 BreakFix
# fix break: contig_1:2691091 0 -0 +0 NoSolution
fix break: contig_1:2691496 2691253 -455 +447 BreakFix
fix break: contig_1:2691904 2691711 -379 +376 BreakFix
# fix break: contig_1:2693562-2693828 0 -0 +0 NoSolution TandemRepeat 98
# fix break: contig_1:2694222-2694224 0 -0 +0 NoSolution TandemRepeat 98
# fix break: contig_1:2695749-2695758 0 -0 +0 NoSolution
# fix break: contig_1:2697030-2697034 0 -0 +0 NoSolution
# fix break: contig_1:2697939-2698026 0 -0 +0 NoSolution
# fix break: contig_1:2698311-2698315 0 -0 +0 NoSolution
fix break: contig_1:2699392-2699393 2699393 -228 +227 BreakFix
fix break: contig_1:2700506 2700402 -333 +331 BreakFix
# fix break: contig_1:2700928-2701191 0 -0 +0 NoSolution
fix break: contig_1:2701469-2701500 2701228 -469 +464 BreakFix
fix break: contig_1:2702519 2702342 -338 +331 BreakFix
fix break: contig_1:2704239-2704246 2704172 -200 +199 BreakFix
fix break: contig_1:2704771-2704772 2704676 -142 +139 BreakFix
# fix break: contig_1:2707014 0 -0 +0 NoSolution
# fix break: contig_1:2708473 0 -0 +0 NoSolution
# fix break: contig_1:2709184-2709195 0 -0 +0 NoSolution
# fix break: contig_1:2709412-2709457 0 -0 +0 NoSolution
fix break: contig_1:2710652-2710653 2710533 -108 +109 BreakFix
# fix break: contig_1:2713453 0 -0 +0 NoSolution
# fix break: contig_1:2714888 0 -0 +0 NoSolution
# fix break: contig_1:2715160 0 -0 +0 NoSolution
# fix break: contig_1:2715489-2715583 0 -0 +0 NoSolution
fix break: contig_1:2716433-2716435 2716431 -199 +197 BreakFix
# fix break: contig_1:2718703-2718718 0 -0 +0 NoSolution
# fix break: contig_1:2722869 0 -0 +0 NoSolution
# fix break: contig_1:2723312-2723577 0 -0 +0 NoSolution
# fix break: contig_1:2723951-2723966 0 -0 +0 NoSolution
# fix break: contig_1:2725103-2725363 0 -0 +0 NoSolution
fix break: contig_1:2725960 2725773 -188 +184 BreakFix
fix break: contig_1:2726299 2726298 -176 +172 BreakFix
# fix break: contig_1:2727892 0 -0 +0 NoSolution
fix break: contig_1:2730107 2730048 -262 +258 BreakFix
fix break: contig_1:2730723 2730656 -309 +306 BreakFix
# fix break: contig_1:2731574 0 -0 +0 NoSolution
fix break: contig_1:2732906 2732750 -365 +360 BreakFix
fix break: contig_1:2733114-2733115 2732910 -205 +199 BreakFix
fix break: contig_1:2735820-2735930 2735761 -247 +241 BreakFix
# fix break: contig_1:2736300-2746300 0 -0 +0 NoSolution
# fix break: contig_1:2746701-2746707 0 -0 +0 NoSolution
# fix break: contig_1:2750038-2750184 0 -0 +0 NoSolution
fix break: contig_1:2750949 2750798 -261 +252 BreakFix
# fix break: contig_1:2751255-2751280 0 -0 +0 NoSolution
# fix break: contig_1:2752638-2758886 0 -0 +0 NoSolution
fix break: contig_1:2759190-2759261 2759134 -319 +325 BreakFix
fix break: contig_1:2760173-2760408 2759957 -664 +660 BreakFix
fix break: contig_1:2760787 2760597 -245 +240 BreakFix
# fix break: contig_1:2761118-2761121 0 -0 +0 NoSolution
# fix break: contig_1:2762023-2763286 0 -0 +0 NoSolution
# fix break: contig_1:2763496-2763524 0 -0 +0 NoSolution
fix break: contig_1:2764034-2764035 2763991 -181 +178 BreakFix
# fix break: contig_1:2764352-2765573 0 -0 +0 NoSolution
# fix break: contig_1:2767750 0 -0 +0 NoSolution
fix break: contig_1:2767985 2767749 -237 +233 BreakFix
fix break: contig_1:2768331-2768338 2768340 -232 +233 BreakFix
fix break: contig_1:2768739-2768906 2768575 -556 +550 BreakFix
fix break: contig_1:2769519 2769379 -358 +353 BreakFix
# fix break: contig_1:2770377-2770378 0 -0 +0 NoSolution
fix break: contig_1:2770965-2771068 2770785 -284 +279 BreakFix
fix break: contig_1:2772500 2772440 -213 +211 BreakFix
# fix break: contig_1:2772843 0 -0 +0 NoSolution
fix break: contig_1:2776781 2776780 -130 +126 BreakFix
# fix break: contig_1:2777199-2777227 0 -0 +0 NoSolution
fix break: contig_1:2777595-2777721 2777567 -254 +248 BreakFix
# fix break: contig_1:2781006 0 -0 +0 NoSolution
# fix break: contig_1:2783080-2783198 0 -0 +0 NoSolution
# fix break: contig_1:2783590 0 -0 +0 NoSolution
fix break: contig_1:2785055 2785059 -217 +210 BreakFix
fix break: contig_1:2785275 2785059 -399 +391 BreakFix
# fix break: contig_1:2789139 0 -0 +0 NoSolution
fix break: contig_1:2789852 2789851 -207 +203 BreakFix
# fix break: contig_1:2791894 0 -0 +0 NoSolution
# fix break: contig_1:2792546 0 -0 +0 NoSolution
# fix break: contig_1:2792866-2792947 0 -0 +0 NoSolution
# fix break: contig_1:2793201 0 -0 +0 NoSolution
fix break: contig_1:2793550 2793335 -453 +445 BreakFix
# fix break: contig_1:2794830 0 -0 +0 NoSolution
# fix break: contig_1:2795083 0 -0 +0 NoSolution
# fix break: contig_1:2799442 0 -0 +0 NoSolution
# fix break: contig_1:2800726-2800966 0 -0 +0 NoSolution
fix break: contig_1:2803860-2803867 2803987 -59 +58 BreakFix
# fix break: contig_1:2804272-2804284 0 -0 +0 NoSolution
# fix break: contig_1:2804995-2805100 0 -0 +0 NoSolution TandemRepeat 111
# fix break: contig_1:2805641 0 -0 +0 NoSolution TandemRepeat 111
# fix break: contig_1:2806537-2806588 0 -0 +0 NoSolution TandemRepeat 111
# fix break: contig_1:2808286 0 -0 +0 NoSolution TandemRepeat 111
fix break: contig_1:2809463 2809226 -334 +332 BreakFix
fix break: contig_1:2809854-2809858 2809857 -219 +216 BreakFix
# fix break: contig_1:2811185-2811210 0 -0 +0 NoSolution
# fix break: contig_1:2811573-2811576 0 -0 +0 NoSolution
# fix break: contig_1:2811900-2811902 0 -0 +0 NoSolution
# fix break: contig_1:2812179 0 -0 +0 NoSolution
# fix break: contig_1:2812448-2812457 0 -0 +0 NoSolution
# fix break: contig_1:2812847-2812863 0 -0 +0 NoSolution
# fix break: contig_1:2813415 0 -0 +0 NoSolution
# fix break: contig_1:2813664 0 -0 +0 NoSolution
# fix break: contig_1:2814090-2814253 0 -0 +0 NoSolution
# fix break: contig_1:2817763 0 -0 +0 NoSolution
# fix break: contig_1:2818185 0 -0 +0 NoSolution
fix break: contig_1:2820629-2820631 2820506 -329 +325 BreakFix
fix break: contig_1:2821081-2821093 2820838 -356 +352 BreakFix
fix break: contig_1:2822135 2821972 -398 +394 BreakFix
fix break: contig_1:2823954 2823958 -165 +163 BreakFix
fix break: contig_1:2825246-2825252 2825028 -225 +225 BreakFix
fix break: contig_1:2826767 2826658 -110 +106 BreakFix
# fix break: contig_1:2827110-2827118 0 -0 +0 NoSolution
# fix break: contig_1:2827401 0 -0 +0 NoSolution
# fix break: contig_1:2830309 0 -0 +0 NoSolution
# fix break: contig_1:2830741 0 -0 +0 NoSolution
fix break: contig_1:2831299 2831303 -119 +115 BreakFix
# fix break: contig_1:2832086-2832158 0 -0 +0 NoSolution
fix break: contig_1:2833601-2833683 2833375 -227 +224 BreakFix
# fix break: contig_1:2834400 0 -0 +0 NoSolution
# fix break: contig_1:2835778-2835819 0 -0 +0 NoSolution
# fix break: contig_1:2840708 0 -0 +0 NoSolution
# fix break: contig_1:2842294 0 -0 +0 NoSolution
# fix break: contig_1:2842671 0 -0 +0 NoSolution
fix break: contig_1:2844898 2844656 -365 +362 BreakFix
# fix break: contig_1:2845501 0 -0 +0 NoSolution
# fix break: contig_1:2846360-2846806 0 -0 +0 NoSolution
# fix break: contig_1:2847188-2855914 0 -0 +0 NoSolution
# fix break: contig_1:2856297-2857744 0 -0 +0 NoSolution
fix break: contig_1:2858244-2858343 2858038 -429 +507 BreakFix
# fix break: contig_1:2859290 0 -0 +0 NoSolution
# fix break: contig_1:2859778 0 -0 +0 NoSolution
fix break: contig_1:2864337 2864295 -281 +278 BreakFix
# fix break: contig_1:2865171-2865235 0 -0 +0 NoSolution
fix break: contig_1:2866313 2866163 -310 +309 BreakFix
fix break: contig_1:2866887 2866734 -386 +380 BreakFix
# fix break: contig_1:2867119 0 -0 +0 NoSolution
fix break: contig_1:2867932-2868259 2867931 -525 +516 BreakFix
fix break: contig_1:2868889-2868898 2868948 -68 +66 BreakFix
# fix break: contig_1:2869252-2869254 0 -0 +0 NoSolution
# fix break: contig_1:2870637-2870818 0 -0 +0 NoSolution
fix break: contig_1:2871794-2871983 2871794 -375 +194 BreakFix
# fix break: contig_1:2872857 0 -0 +0 NoSolution
fix break: contig_1:2873788 2873673 -270 +268 BreakFix
# fix break: contig_1:2874864-2874865 0 -0 +0 NoSolution
# fix break: contig_1:2875793-2875797 0 -0 +0 NoSolution
fix break: contig_1:2876027-2876054 2875793 -262 +256 BreakFix
fix break: contig_1:2876365 2876369 -91 +88 BreakFix
fix break: contig_1:2877387 2877345 -43 +40 BreakFix
fix break: contig_1:2879113-2879120 2878890 -224 +222 BreakFix
# fix break: contig_1:2883641-2883976 0 -0 +0 NoSolution
fix break: contig_1:2885125 2884943 -407 +397 BreakFix
# fix break: contig_1:2887572-2887619 0 -0 +0 NoSolution
# fix break: contig_1:2890528-2890531 0 -0 +0 NoSolution
fix break: contig_1:2890823 2890719 -168 +167 BreakFix
fix break: contig_1:2891384 2891388 -175 +169 BreakFix
# fix break: contig_1:2892169-2892473 0 -0 +0 NoSolution
fix break: contig_1:2898791 2898662 -360 +352 BreakFix
fix break: contig_1:2900261 2900114 -226 +228 BreakFix
# fix break: contig_1:2901836-2901926 0 -0 +0 NoSolution
fix break: contig_1:2902222 2902089 -243 +240 BreakFix
# fix break: contig_1:2903328-2903504 0 -0 +0 NoSolution
fix break: contig_1:2904066-2904076 2903827 -465 +460 BreakFix
# fix break: contig_1:2904489-2905692 0 -0 +0 NoSolution
# fix break: contig_1:2908380-2908460 0 -0 +0 NoSolution
# fix break: contig_1:2909151-2909184 0 -0 +0 NoSolution
# fix break: contig_1:2909408-2909572 0 -0 +0 NoSolution
# fix break: contig_1:2909985-2909997 0 -0 +0 NoSolution
# fix break: contig_1:2910355 0 -0 +0 NoSolution
fix break: contig_1:2910589-2910672 2910357 -511 +530 BreakFix
# fix break: contig_1:2911036-2911043 0 -0 +0 NoSolution
# fix break: contig_1:2911300-2911307 0 -0 +0 NoSolution
fix break: contig_1:2913054 2912953 -224 +225 BreakFix
fix break: contig_1:2916244-2916558 2916036 -766 +1154 BreakFix
# fix break: contig_1:2917661-2917828 0 -0 +0 NoSolution
fix break: contig_1:2918124 2917943 -393 +395 BreakFix
# fix break: contig_1:2918974-2919065 0 -0 +0 NoSolution
# fix break: contig_1:2919395 0 -0 +0 NoSolution
# fix break: contig_1:2920059 0 -0 +0 NoSolution
# fix break: contig_1:2920695-2920921 0 -0 +0 NoSolution
# fix break: contig_1:2922205 0 -0 +0 NoSolution
# fix break: contig_1:2922576 0 -0 +0 NoSolution
fix break: contig_1:2922793-2922876 2922694 -369 +280 BreakFix
# fix break: contig_1:2924280-2924438 0 -0 +0 NoSolution
fix break: contig_1:2925954 2925921 -203 +200 BreakFix
fix break: contig_1:2928662 2928444 -439 +441 BreakFix
fix break: contig_1:2930880-2930883 2930703 -389 +389 BreakFix
# fix break: contig_1:2933233-2934404 0 -0 +0 NoSolution
# fix break: contig_1:2935288-2935291 0 -0 +0 NoSolution
# fix break: contig_1:2935915-2936328 0 -0 +0 NoSolution
# fix break: contig_1:2936772 0 -0 +0 NoSolution
# fix break: contig_1:2937477-2937487 0 -0 +0 NoSolution
fix break: contig_1:2938059 2937941 -331 +325 BreakFix
# fix break: contig_1:2939425-2939436 0 -0 +0 NoSolution
fix break: contig_1:2941405 2941213 -193 +189 BreakFix
# fix break: contig_1:2942060-2942551 0 -0 +0 NoSolution
fix break: contig_1:2942775-2942788 2942657 -247 +245 BreakFix
# fix break: contig_1:2943357-2943541 0 -0 +0 NoSolution
fix break: contig_1:2944133-2944146 2943995 -372 +374 BreakFix
fix break: contig_1:2944366-2944371 2944277 -90 +91 BreakFix
fix break: contig_1:2947498-2947679 2947409 -488 +500 BreakFix
# fix break: contig_1:2948403-2948404 0 -0 +0 NoSolution
# fix break: contig_1:2950446-2950447 0 -0 +0 NoSolution
# fix break: contig_1:2950717 0 -0 +0 NoSolution
fix break: contig_1:2953517-2953679 2953517 -378 +365 BreakFix
fix break: contig_1:2954295 2954141 -326 +321 BreakFix
fix break: contig_1:2955798-2955802 2955656 -329 +324 BreakFix
fix break: contig_1:2956137 2955895 -299 +299 BreakFix
fix break: contig_1:2957347-2957356 2957269 -164 +162 BreakFix
fix break: contig_1:2959088-2959287 2958914 -452 +442 BreakFix
fix break: contig_1:2960361 2960178 -386 +378 BreakFix
fix break: contig_1:2963007-2963016 2962768 -372 +367 BreakFix
# fix break: contig_1:2966661-2967161 0 -0 +0 NoSolution
fix break: contig_1:2967571-2967583 2967359 -459 +459 BreakFix
# fix break: contig_1:2969183-2969197 0 -0 +0 NoSolution
fix break: contig_1:2969422-2969468 2969186 -417 +414 BreakFix
# fix break: contig_1:2971174-2971185 0 -0 +0 NoSolution
# fix break: contig_1:2971570-2971884 0 -0 +0 NoSolution
fix break: contig_1:2972276-2972289 2972050 -397 +393 BreakFix
# fix break: contig_1:2972636-2972698 0 -0 +0 NoSolution TandemRepeat 133
# fix break: contig_1:2972953-2972962 0 -0 +0 NoSolution TandemRepeat 133
# fix break: contig_1:2973395-2973419 0 -0 +0 NoSolution TandemRepeat 133
# fix break: contig_1:2973882-2974761 0 -0 +0 NoSolution TandemRepeat 133
# fix break: contig_1:2975008-2975432 0 -0 +0 NoSolution TandemRepeat 133
# fix break: contig_1:2975647-2976784 0 -0 +0 NoSolution TandemRepeat 133
fix break: contig_1:2977173-2977481 2976988 -729 +726 BreakFix
fix break: contig_1:2978354-2978368 2978184 -388 +385 BreakFix
fix break: contig_1:2979876 2979880 -24 +23 BreakFix
# fix break: contig_1:2981798-2981801 0 -0 +0 NoSolution
fix break: contig_1:2982432 2982436 -233 +230 BreakFix
fix break: contig_1:2982877 2982672 -360 +355 BreakFix
fix break: contig_1:2983463-2983497 2983432 -226 +224 BreakFix
# fix break: contig_1:2983929 0 -0 +0 NoSolution
fix break: contig_1:2984447 2984275 -173 +170 BreakFix
fix break: contig_1:2985878 2985655 -358 +354 BreakFix
fix break: contig_1:2986723-2986725 2986501 -436 +435 BreakFix
# fix break: contig_1:2988028-2988085 0 -0 +0 NoSolution
# fix break: contig_1:2989711-2991302 0 -0 +0 NoSolution
# fix break: contig_1:2991661-2991857 0 -0 +0 NoSolution
# fix break: contig_1:2994446-2994840 0 -0 +0 NoSolution
fix break: contig_1:2995915 2995698 -364 +368 BreakFix
fix break: contig_1:2999218-2999225 2999089 -352 +350 BreakFix
# fix break: contig_1:2999487-2999588 0 -0 +0 NoSolution
fix break: contig_1:3001623 3001422 -369 +367 BreakFix
# fix break: contig_1:3002395-3002407 0 -0 +0 NoSolution
fix break: contig_1:3004754-3004766 3004573 -431 +434 BreakFix
fix break: contig_1:3005350 3005243 -324 +321 BreakFix
# fix break: contig_1:3005552-3005645 0 -0 +0 NoSolution
# fix break: contig_1:3006443 0 -0 +0 NoSolution
# fix break: contig_1:3007082-3007121 0 -0 +0 NoSolution
# fix break: contig_1:3009514 0 -0 +0 NoSolution
fix break: contig_1:3010499-3010821 3010413 -540 +532 BreakFix
fix break: contig_1:3011135 3010920 -319 +313 BreakFix
fix break: contig_1:3012575-3012579 3012575 -208 +204 BreakFix
# fix break: contig_1:3013907 0 -0 +0 NoSolution
# fix break: contig_1:3014992 0 -0 +0 NoSolution
# fix break: contig_1:3016408-3016410 0 -0 +0 NoSolution
# fix break: contig_1:3016776 0 -0 +0 NoSolution
# fix break: contig_1:3018511-3018512 0 -0 +0 NoSolution
fix break: contig_1:3020306 3020064 -304 +303 BreakFix
fix break: contig_1:3021396 3021248 -367 +367 BreakFix
# fix break: contig_1:3023525 0 -0 +0 NoSolution
fix break: contig_1:3024187-3024190 3024010 -181 +176 BreakFix
fix break: contig_1:3024568 3024483 -176 +171 BreakFix
# fix break: contig_1:3025963-3028865 0 -0 +0 NoSolution
fix break: contig_1:3029555 3029477 -317 +313 BreakFix
fix break: contig_1:3030517-3030518 3030305 -190 +189 BreakFix
# fix break: contig_1:3032131-3032457 0 -0 +0 NoSolution
# fix break: contig_1:3032876 0 -0 +0 NoSolution
fix break: contig_1:3033479 3033419 -296 +294 BreakFix
fix break: contig_1:3034664 3034668 -232 +229 BreakFix
fix break: contig_1:3036726 3036693 -277 +274 BreakFix
# fix break: contig_1:3036969 0 -0 +0 NoSolution
fix break: contig_1:3037729-3037850 3037490 -562 +558 BreakFix
fix break: contig_1:3038856-3038862 3038692 -403 +399 BreakFix
fix break: contig_1:3039730 3039663 -251 +248 BreakFix
# fix break: contig_1:3041309 0 -0 +0 NoSolution
# fix break: contig_1:3041582-3041587 0 -0 +0 NoSolution
# fix break: contig_1:3042790 0 -0 +0 NoSolution
# fix break: contig_1:3043977 0 -0 +0 NoSolution
# fix break: contig_1:3044832-3046878 0 -0 +0 NoSolution
# fix break: contig_1:3047082-3052128 0 -0 +0 NoSolution
# fix break: contig_1:3052340 0 -0 +0 NoSolution
# fix break: contig_1:3053044-3053071 0 -0 +0 NoSolution
fix break: contig_1:3053411-3053739 3053365 -596 +596 BreakFix
fix break: contig_1:3054053-3054090 3053960 -328 +324 BreakFix
fix break: contig_1:3054385-3055094 3054289 -1028 +654 BreakFix
fix break: contig_1:3055750-3055765 3055642 -275 +273 BreakFix
# fix break: contig_1:3057097 0 -0 +0 NoSolution
fix break: contig_1:3059183 3058974 -272 +267 BreakFix
# fix break: contig_1:3059411-3059422 0 -0 +0 NoSolution
fix break: contig_1:3060610-3060677 3060613 -155 +151 BreakFix
fix break: contig_1:3061727 3061499 -345 +342 BreakFix
fix break: contig_1:3062567-3062568 3062361 -42 +42 BreakFix
# fix break: contig_1:3063229-3063531 0 -0 +0 NoSolution
# fix break: contig_1:3065800-3066001 0 -0 +0 NoSolution
# fix break: contig_1:3066547 0 -0 +0 NoSolution
fix break: contig_1:3068437-3068524 3068225 -413 +411 BreakFix
fix break: contig_1:3069006 3069010 -160 +157 BreakFix
fix break: contig_1:3069846-3070015 3069824 -266 +264 BreakFix
fix break: contig_1:3070613 3070378 -424 +418 BreakFix
# fix break: contig_1:3071382 0 -0 +0 NoSolution
fix break: contig_1:3072808 3072597 -444 +441 BreakFix
# fix break: contig_1:3073757-3073858 0 -0 +0 NoSolution
fix break: contig_1:3074186 3074146 -262 +260 BreakFix
# fix break: contig_1:3075085-3075096 0 -0 +0 NoSolution
# fix break: contig_1:3075738-3075853 0 -0 +0 NoSolution
fix break: contig_1:3076319-3076335 3076085 -377 +374 BreakFix
fix break: contig_1:3076759-3076894 3076646 -469 +454 BreakFix
# fix break: contig_1:3077216 0 -0 +0 NoSolution
fix break: contig_1:3077820-3077930 3077659 -272 +268 BreakFix
# fix break: contig_1:3079002 0 -0 +0 NoSolution
# fix break: contig_1:3081508 0 -0 +0 NoSolution
fix break: contig_1:3082001 3082005 -37 +32 BreakFix
# fix break: contig_1:3082314 0 -0 +0 NoSolution
fix break: contig_1:3083656 3083413 -401 +395 BreakFix
fix break: contig_1:3084506-3084662 3084489 -174 +171 BreakFix
# fix break: contig_1:3085254-3085784 0 -0 +0 NoSolution
fix break: contig_1:3086594-3086699 3086355 -565 +557 BreakFix
# fix break: contig_1:3088361-3088402 0 -0 +0 NoSolution
# fix break: contig_1:3090425-3090440 0 -0 +0 NoSolution TandemRepeat 198
# fix break: contig_1:3091545-3091844 0 -0 +0 NoSolution TandemRepeat 198
# fix break: contig_1:3092266-3092316 0 -0 +0 NoSolution TandemRepeat 198
# fix break: contig_1:3093432-3093461 0 -0 +0 NoSolution
# fix break: contig_1:3093774-3095118 0 -0 +0 NoSolution
# fix break: contig_1:3098202-3098217 0 -0 +0 NoSolution
# fix break: contig_1:3098543 0 -0 +0 NoSolution
# fix break: contig_1:3099724-3100136 0 -0 +0 NoSolution
# fix break: contig_1:3101129-3101140 0 -0 +0 NoSolution
fix break: contig_1:3101956 3101892 -278 +276 BreakFix
# fix break: contig_1:3106233-3106290 0 -0 +0 NoSolution
# fix break: contig_1:3106575-3106580 0 -0 +0 NoSolution
# fix break: contig_1:3107344 0 -0 +0 NoSolution
# fix break: contig_1:3108129 0 -0 +0 NoSolution
# fix break: contig_1:3108541 0 -0 +0 NoSolution
# fix break: contig_1:3108907-3108968 0 -0 +0 NoSolution
# fix break: contig_1:3109559-3109679 0 -0 +0 NoSolution
fix break: contig_1:3109888-3110184 3109683 -502 +494 BreakFix
# fix break: contig_1:3112166-3112175 0 -0 +0 NoSolution
# fix break: contig_1:3112423-3112470 0 -0 +0 NoSolution
# fix break: contig_1:3114849 0 -0 +0 NoSolution
# fix break: contig_1:3115392-3115622 0 -0 +0 NoSolution
fix break: contig_1:3116634-3116635 3116453 -221 +217 BreakFix
# fix break: contig_1:3117610 0 -0 +0 NoSolution
fix break: contig_1:3118034 3117800 -380 +376 BreakFix
# fix break: contig_1:3118382 0 -0 +0 NoSolution
fix break: contig_1:3119931 3119692 -447 +440 BreakFix
fix break: contig_1:3121006 3121005 -162 +158 BreakFix
fix break: contig_1:3122738 3122497 -422 +417 BreakFix
fix break: contig_1:3124273-3124377 3124072 -514 +510 BreakFix
# fix break: contig_1:3125973 0 -0 +0 NoSolution
fix break: contig_1:3126201-3126254 3125977 -456 +445 BreakFix
fix break: contig_1:3127299 3127131 -318 +314 BreakFix
# fix break: contig_1:3127958 0 -0 +0 NoSolution
# fix break: contig_1:3128288 0 -0 +0 NoSolution
fix break: contig_1:3128715-3129005 3128522 -699 +696 BreakFix
# fix break: contig_1:3129475 0 -0 +0 NoSolution
# fix break: contig_1:3129749-3130608 0 -0 +0 NoSolution
fix break: contig_1:3130914-3130924 3130717 -329 +330 BreakFix
fix break: contig_1:3132022-3132126 3131784 -343 +338 BreakFix
fix break: contig_1:3136856-3136865 3136900 -182 +179 BreakFix
fix break: contig_1:3137391-3137563 3137346 -346 +344 BreakFix
fix break: contig_1:3137910-3138018 3137697 -451 +451 BreakFix
# fix break: contig_1:3140032 0 -0 +0 NoSolution
# fix break: contig_1:3141342-3141733 0 -0 +0 NoSolution
fix break: contig_1:3142190-3142326 3142127 -440 +431 BreakFix
# fix break: contig_1:3144579-3144615 0 -0 +0 NoSolution
# fix break: contig_1:3144977 0 -0 +0 NoSolution
fix break: contig_1:3145218 3144981 -367 +359 BreakFix
fix break: contig_1:3145567 3145351 -411 +410 BreakFix
# fix break: contig_1:3146051-3146197 0 -0 +0 NoSolution
# fix break: contig_1:3147207 0 -0 +0 NoSolution
# fix break: contig_1:3147741-3147744 0 -0 +0 NoSolution
# fix break: contig_1:3148093-3148098 0 -0 +0 NoSolution
fix break: contig_1:3148362-3148569 3148194 -600 +596 BreakFix
# fix break: contig_1:3149504 0 -0 +0 NoSolution
# fix break: contig_1:3152180-3152270 0 -0 +0 NoSolution
# fix break: contig_1:3153128-3153137 0 -0 +0 NoSolution
fix break: contig_1:3156225-3156226 3156103 -366 +358 BreakFix
# fix break: contig_1:3157971 0 -0 +0 NoSolution
# fix break: contig_1:3159504-3159505 0 -0 +0 NoSolution
# fix break: contig_1:3159924 0 -0 +0 NoSolution
fix break: contig_1:3163766-3163988 3163680 -379 +497 BreakFix
# fix break: contig_1:3164496 0 -0 +0 NoSolution
# fix break: contig_1:3164846-3164848 0 -0 +0 NoSolution
# fix break: contig_1:3165381-3165440 0 -0 +0 NoSolution
fix break: contig_1:3166418-3166609 3166311 -321 +318 BreakFix
fix break: contig_1:3167289 3167157 -369 +363 BreakFix
# fix break: contig_1:3168940 0 -0 +0 NoSolution
# fix break: contig_1:3175590 0 -0 +0 NoSolution
# fix break: contig_1:3176718 0 -0 +0 NoSolution
fix break: contig_1:3179188-3179199 3179134 -296 +293 BreakFix
# fix break: contig_1:3180492-3182794 0 -0 +0 NoSolution
fix break: contig_1:3183493 3183283 -439 +435 BreakFix
fix break: contig_1:3184374-3184380 3184245 -83 +80 BreakFix
# fix break: contig_1:3185416-3185783 0 -0 +0 NoSolution
fix break: contig_1:3188187-3188380 3187976 -580 +576 BreakFix
fix break: contig_1:3189354 3189358 -190 +188 BreakFix
# fix break: contig_1:3191112-3191264 0 -0 +0 NoSolution
fix break: contig_1:3191639 3191478 -345 +343 BreakFix
fix break: contig_1:3192260-3192261 3192259 -187 +183 BreakFix
# fix break: contig_1:3195470-3195616 0 -0 +0 NoSolution
fix break: contig_1:3196130 3195895 -473 +468 BreakFix
fix break: contig_1:3196700 3196470 -421 +421 BreakFix
fix break: contig_1:3197360 3197148 -398 +395 BreakFix
# fix break: contig_1:3200198 0 -0 +0 NoSolution
fix break: contig_1:3201076 3200914 -330 +322 BreakFix
# fix break: contig_1:3202180 0 -0 +0 NoSolution
# fix break: contig_1:3202585-3202591 0 -0 +0 NoSolution
# fix break: contig_1:3202824 0 -0 +0 NoSolution
fix break: contig_1:3203054-3203057 3202823 -478 +474 BreakFix
# fix break: contig_1:3204624-3204683 0 -0 +0 NoSolution
# fix break: contig_1:3204971 0 -0 +0 NoSolution
# fix break: contig_1:3207043-3207044 0 -0 +0 NoSolution
# fix break: contig_1:3207411-3207560 0 -0 +0 NoSolution
# fix break: contig_1:3207865-3207866 0 -0 +0 NoSolution
# fix break: contig_1:3208990 0 -0 +0 NoSolution
# fix break: contig_1:3210817-3210969 0 -0 +0 NoSolution
# fix break: contig_1:3211429 0 -0 +0 NoSolution
# fix break: contig_1:3212462 0 -0 +0 NoSolution
fix break: contig_1:3212859 3212683 -177 +171 BreakFix
# fix break: contig_1:3214256 0 -0 +0 NoSolution
# fix break: contig_1:3214517-3214526 0 -0 +0 NoSolution
# fix break: contig_1:3217851 0 -0 +0 NoSolution
fix break: contig_1:3221223-3228768 3221076 -7903 +866 BreakFix
fix break: contig_1:3230301-3230516 3230119 -628 +623 BreakFix
fix break: contig_1:3230746-3230840 3230540 -543 +540 BreakFix
fix break: contig_1:3231053-3231065 3230828 -255 +253 BreakFix
# fix break: contig_1:3233289 0 -0 +0 NoSolution
# fix break: contig_1:3233574 0 -0 +0 NoSolution
fix break: contig_1:3233917-3233955 3233778 -380 +376 BreakFix
# fix break: contig_1:3234712-3234737 0 -0 +0 NoSolution
fix break: contig_1:3235338-3235898 3235191 -832 +1297 BreakFix
# fix break: contig_1:3238287 0 -0 +0 NoSolution
# fix break: contig_1:3241727 0 -0 +0 NoSolution
fix break: contig_1:3242289 3242192 -327 +322 BreakFix
fix break: contig_1:3243402 3243253 -376 +374 BreakFix
fix break: contig_1:3245517 3245293 -359 +354 BreakFix
# fix break: contig_1:3246242 0 -0 +0 NoSolution
# fix break: contig_1:3248441-3248499 0 -0 +0 NoSolution
fix break: contig_1:3251064 3250915 -391 +386 BreakFix
fix break: contig_1:3251390-3251393 3251150 -459 +449 BreakFix
fix break: contig_1:3251922-3251924 3251684 -293 +287 BreakFix
# fix break: contig_1:3252429 0 -0 +0 NoSolution
fix break: contig_1:3252917-3253248 3252700 -674 +395 BreakFix
fix break: contig_1:3254349-3254366 3254154 -207 +206 BreakFix
# fix break: contig_1:3255311-3255312 0 -0 +0 NoSolution
# fix break: contig_1:3255592-3255605 0 -0 +0 NoSolution
# fix break: contig_1:3257203 0 -0 +0 NoSolution
# fix break: contig_1:3260364 0 -0 +0 NoSolution
fix break: contig_1:3261682-3261689 3261556 -369 +366 BreakFix
# fix break: contig_1:3262063 0 -0 +0 NoSolution
fix break: contig_1:3262516-3262627 3262342 -513 +500 BreakFix
# fix break: contig_1:3263473-3263474 0 -0 +0 NoSolution
fix break: contig_1:3263833-3263838 3263646 -387 +385 BreakFix
# fix break: contig_1:3265399 0 -0 +0 NoSolution
# fix break: contig_1:3265902 0 -0 +0 NoSolution
# fix break: contig_1:3267506-3267510 0 -0 +0 NoSolution
# fix break: contig_1:3268154 0 -0 +0 NoSolution
# fix break: contig_1:3269499-3269613 0 -0 +0 NoSolution
# fix break: contig_1:3269854-3269978 0 -0 +0 NoSolution
# fix break: contig_1:3270454-3270476 0 -0 +0 NoSolution
# fix break: contig_1:3272018-3272023 0 -0 +0 NoSolution
# fix break: contig_1:3272498-3272507 0 -0 +0 NoSolution
# fix break: contig_1:3273025-3273126 0 -0 +0 NoSolution
fix break: contig_1:3273682-3273802 3273485 -434 +429 BreakFix
fix break: contig_1:3274399-3274403 3274168 -461 +459 BreakFix
fix break: contig_1:3274708 3274484 -460 +460 BreakFix
fix break: contig_1:3276923 3276738 -378 +381 BreakFix
fix break: contig_1:3277542-3277562 3277336 -428 +427 BreakFix
# fix break: contig_1:3278043 0 -0 +0 NoSolution
# fix break: contig_1:3279699 0 -0 +0 NoSolution
# fix break: contig_1:3280185 0 -0 +0 NoSolution
# fix break: contig_1:3283285-3283446 0 -0 +0 NoSolution TandemRepeat 245
# fix break: contig_1:3284233-3284594 0 -0 +0 NoSolution TandemRepeat 245
# fix break: contig_1:3284838-3287974 0 -0 +0 NoSolution TandemRepeat 245
# fix break: contig_1:3288271-3289304 0 -0 +0 NoSolution
# fix break: contig_1:3289566-3289924 0 -0 +0 NoSolution
fix break: contig_1:3291278 3291070 -447 +441 BreakFix
fix break: contig_1:3291516-3291525 3291282 -337 +331 BreakFix
fix break: contig_1:3293343-3293349 3293157 -429 +422 BreakFix
# fix break: contig_1:3293875 0 -0 +0 NoSolution
# fix break: contig_1:3294100-3294117 0 -0 +0 NoSolution
# fix break: contig_1:3295293 0 -0 +0 NoSolution
fix break: contig_1:3296322-3296477 3296083 -500 +503 BreakFix
fix break: contig_1:3296772 3296585 -379 +374 BreakFix
fix break: contig_1:3297086-3297090 3296963 -331 +327 BreakFix
fix break: contig_1:3297704 3297657 -261 +258 BreakFix
# fix break: contig_1:3299237-3299656 0 -0 +0 NoSolution
# fix break: contig_1:3299871 0 -0 +0 NoSolution
fix break: contig_1:3300201 3300144 -187 +184 BreakFix
fix break: contig_1:3301303 3301087 -217 +213 BreakFix
# fix break: contig_1:3302723 0 -0 +0 NoSolution
fix break: contig_1:3303207 3303026 -257 +253 BreakFix
fix break: contig_1:3303758 3303524 -390 +386 BreakFix
# fix break: contig_1:3304130 0 -0 +0 NoSolution
# fix break: contig_1:3306197 0 -0 +0 NoSolution
fix break: contig_1:3306598-3306833 3306602 -285 +279 BreakFix
fix break: contig_1:3310821 3310639 -411 +403 BreakFix
# fix break: contig_1:3312813-3313000 0 -0 +0 NoSolution
# fix break: contig_1:3314524-3331488 0 -0 +0 NoSolution
# fix break: contig_1:3332321-3332623 0 -0 +0 NoSolution
fix break: contig_1:3333544 3333375 -289 +285 BreakFix
# fix break: contig_1:3334125 0 -0 +0 NoSolution
# fix break: contig_1:3336515-3336527 0 -0 +0 NoSolution
# fix break: contig_1:3336858-3336940 0 -0 +0 NoSolution
# fix break: contig_1:3337147 0 -0 +0 NoSolution
fix break: contig_1:3337770-3337783 3337611 -338 +339 BreakFix
fix break: contig_1:3338555 3338375 -371 +366 BreakFix
# fix break: contig_1:3339064-3339349 0 -0 +0 NoSolution
fix break: contig_1:3340894-3340903 3340678 -452 +448 BreakFix
# fix break: contig_1:3341144-3341153 0 -0 +0 NoSolution
fix break: contig_1:3341826-3341958 3341709 -484 +480 BreakFix
# fix break: contig_1:3343077 0 -0 +0 NoSolution
fix break: contig_1:3346804 3346565 -448 +446 BreakFix
# fix break: contig_1:3350893-3350906 0 -0 +0 NoSolution
# fix break: contig_1:3351764-3351767 0 -0 +0 NoSolution
fix break: contig_1:3353911-3353912 3353693 -460 +455 BreakFix
fix break: contig_1:3355880 3355691 -414 +414 BreakFix
# fix break: contig_1:3357190-3357191 0 -0 +0 NoSolution
fix break: contig_1:3357490 3357380 -133 +128 BreakFix
fix break: contig_1:3360054 3360015 -282 +280 BreakFix
fix break: contig_1:3360620-3369146 3360620 -8648 +1278 BreakFix
# fix break: contig_1:3369505-3369511 0 -0 +0 NoSolution
fix break: contig_1:3370138-3370281 3369895 -596 +593 BreakFix
# fix break: contig_1:3370664-3371261 0 -0 +0 NoSolution
fix break: contig_1:3371798-3371812 3371616 -325 +320 BreakFix
# fix break: contig_1:3372199 0 -0 +0 NoSolution
# fix break: contig_1:3372615-3372635 0 -0 +0 NoSolution
fix break: contig_1:3373810-3374073 3373715 -580 +556 BreakFix
# fix break: contig_1:3374294 0 -0 +0 NoSolution
# fix break: contig_1:3376192 0 -0 +0 NoSolution
# fix break: contig_1:3377356 0 -0 +0 NoSolution
fix break: contig_1:3377648 3377429 -220 +217 BreakFix
fix break: contig_1:3378062-3378068 3378214 -55 +53 BreakFix
fix break: contig_1:3381803-3381865 3381598 -434 +433 BreakFix
# fix break: contig_1:3382602 0 -0 +0 NoSolution
# fix break: contig_1:3382828 0 -0 +0 NoSolution
# fix break: contig_1:3383058-3383242 0 -0 +0 NoSolution
# fix break: contig_1:3383542-3383543 0 -0 +0 NoSolution
fix break: contig_1:3389389 3389220 -392 +388 BreakFix
fix break: contig_1:3392193-3392263 3391961 -299 +369 BreakFix
# fix break: contig_1:3393497 0 -0 +0 NoSolution
fix break: contig_1:3395414-3395449 3395317 -168 +171 BreakFix
fix break: contig_1:3397794 3397793 -140 +136 BreakFix
# fix break: contig_1:3401225-3401386 0 -0 +0 NoSolution
# fix break: contig_1:3404183-3404184 0 -0 +0 NoSolution
fix break: contig_1:3404520 3404468 -161 +157 BreakFix
fix break: contig_1:3405613-3405621 3405488 -351 +347 BreakFix
fix break: contig_1:3407861-3407864 3407772 -334 +330 BreakFix
fix break: contig_1:3408961 3408728 -287 +283 BreakFix
fix break: contig_1:3409466-3409529 3409296 -373 +304 BreakFix
# fix break: contig_1:3412184 0 -0 +0 NoSolution
fix break: contig_1:3412585 3412466 -210 +204 BreakFix
fix break: contig_1:3413302 3413259 -44 +43 BreakFix
fix break: contig_1:3414040 3414044 -228 +224 BreakFix
# fix break: contig_1:3417246-3417417 0 -0 +0 NoSolution
# fix break: contig_1:3417853-3417856 0 -0 +0 NoSolution
fix break: contig_1:3418145-3418271 3417965 -538 +533 BreakFix
# fix break: contig_1:3418666 0 -0 +0 NoSolution
# fix break: contig_1:3419047-3419315 0 -0 +0 NoSolution
fix break: contig_1:3419636-3419789 3419640 -190 +183 BreakFix
fix break: contig_1:3421056-3421070 3421060 -204 +202 BreakFix
fix break: contig_1:3421372-3421374 3421195 -229 +228 BreakFix
# fix break: contig_1:3421802-3421809 0 -0 +0 NoSolution
fix break: contig_1:3422490 3422279 -212 +209 BreakFix
# fix break: contig_1:3424937-3425666 0 -0 +0 NoSolution
fix break: contig_1:3427551-3427555 3427345 -440 +436 BreakFix
fix break: contig_1:3429855 3429632 -224 +219 BreakFix
fix break: contig_1:3432825 3432824 -129 +126 BreakFix
# fix break: contig_1:3435209 0 -0 +0 NoSolution
# fix break: contig_1:3437200-3437605 0 -0 +0 NoSolution
# fix break: contig_1:3437976-3437994 0 -0 +0 NoSolution
# fix break: contig_1:3438260-3438278 0 -0 +0 NoSolution
# fix break: contig_1:3438596-3438688 0 -0 +0 NoSolution
fix break: contig_1:3439464 3439434 -236 +232 BreakFix
fix break: contig_1:3440649 3440413 -237 +234 BreakFix
fix break: contig_1:3442218-3442236 3442102 -135 +131 BreakFix
# fix break: contig_1:3444328-3444437 0 -0 +0 NoSolution
fix break: contig_1:3444729 3444531 -418 +411 BreakFix
fix break: contig_1:3445075-3446136 3444890 -1483 +697 BreakFix
# fix break: contig_1:3446578-3447143 0 -0 +0 NoSolution
# fix break: contig_1:3447649-3447659 0 -0 +0 NoSolution
fix break: contig_1:3448390-3448646 3448153 -644 +645 BreakFix
# fix break: contig_1:3450615 0 -0 +0 NoSolution
# fix break: contig_1:3452317-3452323 0 -0 +0 NoSolution
# fix break: contig_1:3453255-3453257 0 -0 +0 NoSolution
fix break: contig_1:3453484 3453260 -225 +222 BreakFix
# fix break: contig_1:3454098-3454730 0 -0 +0 NoSolution
fix break: contig_1:3455072 3454903 -252 +250 BreakFix
fix break: contig_1:3455515-3455520 3455456 -111 +109 BreakFix
# fix break: contig_1:3455768-3455774 0 -0 +0 NoSolution
fix break: contig_1:3456456-3456462 3456456 -247 +245 BreakFix
# fix break: contig_1:3457628-3457645 0 -0 +0 NoSolution
# fix break: contig_1:3457895-3457899 0 -0 +0 NoSolution
fix break: contig_1:3459491-3459649 3459327 -427 +422 BreakFix
# fix break: contig_1:3461869-3461876 0 -0 +0 NoSolution
fix break: contig_1:3462769-3462780 3462538 -428 +424 BreakFix
fix break: contig_1:3464385 3464346 -230 +225 BreakFix
# fix break: contig_1:3465135 0 -0 +0 NoSolution
# fix break: contig_1:3465618-3465631 0 -0 +0 NoSolution
fix break: contig_1:3466015-3466022 3465987 -214 +221 BreakFix
# fix break: contig_1:3466998 0 -0 +0 NoSolution
fix break: contig_1:3469057-3469066 3468825 -295 +293 BreakFix
fix break: contig_1:3470205 3470078 -343 +338 BreakFix
# fix break: contig_1:3471429 0 -0 +0 NoSolution
fix break: contig_1:3473264-3473265 3473264 -47 +47 BreakFix
# fix break: contig_1:3473575 0 -0 +0 NoSolution
fix break: contig_1:3476618-3476800 3476404 -397 +394 BreakFix
fix break: contig_1:3477544 3477499 -221 +218 BreakFix
# fix break: contig_1:3478671-3478809 0 -0 +0 NoSolution
# fix break: contig_1:3479088-3479263 0 -0 +0 NoSolution
fix break: contig_1:3479812-3479833 3479589 -424 +417 BreakFix
# fix break: contig_1:3480040-3480045 0 -0 +0 NoSolution
# fix break: contig_1:3480580-3487704 0 -0 +0 NoSolution
# fix break: contig_1:3488701 0 -0 +0 NoSolution
fix break: contig_1:3491002 3490906 -273 +269 BreakFix
# fix break: contig_1:3491286 0 -0 +0 NoSolution
fix break: contig_1:3491551 3491336 -311 +307 BreakFix
fix break: contig_1:3492247-3492256 3492139 -343 +338 BreakFix
# fix break: contig_1:3492481-3492500 0 -0 +0 NoSolution
# fix break: contig_1:3493220 0 -0 +0 NoSolution
# fix break: contig_1:3493482 0 -0 +0 NoSolution
fix break: contig_1:3493777-3493813 3493796 -88 +86 BreakFix
fix break: contig_1:3494284-3494313 3494148 -407 +398 BreakFix
fix break: contig_1:3494847-3495161 3494649 -733 +731 BreakFix
# fix break: contig_1:3495497-3495658 0 -0 +0 NoSolution
# fix break: contig_1:3496121-3496135 0 -0 +0 NoSolution
fix break: contig_1:3496406-3496649 3496269 -575 +568 BreakFix
# fix break: contig_1:3497935 0 -0 +0 NoSolution
# fix break: contig_1:3498158 0 -0 +0 NoSolution
# fix break: contig_1:3501149-3501339 0 -0 +0 NoSolution
fix break: contig_1:3501796-3501802 3501574 -336 +339 BreakFix
fix break: contig_1:3505416-3505433 3505211 -374 +371 BreakFix
fix break: contig_1:3507710-3507816 3507690 -194 +190 BreakFix
# fix break: contig_1:3509875-3509945 0 -0 +0 NoSolution
# fix break: contig_1:3510154-3510457 0 -0 +0 NoSolution
# fix break: contig_1:3510679-3510706 0 -0 +0 NoSolution
fix break: contig_1:3512514-3512725 3512415 -552 +548 BreakFix
# fix break: contig_1:3513469-3515445 0 -0 +0 NoSolution
fix break: contig_1:3515768-3515860 3515535 -556 +550 BreakFix
# fix break: contig_1:3516613-3516614 0 -0 +0 NoSolution
# fix break: contig_1:3517195-3517430 0 -0 +0 NoSolution
fix break: contig_1:3518028-3518048 3518024 -112 +106 BreakFix
# fix break: contig_1:3519665-3519668 0 -0 +0 NoSolution
# fix break: contig_1:3520807 0 -0 +0 NoSolution
# fix break: contig_1:3522223-3522227 0 -0 +0 NoSolution
fix break: contig_1:3523062-3523064 3522897 -190 +187 BreakFix
# fix break: contig_1:3524596-3524602 0 -0 +0 NoSolution
# fix break: contig_1:3525288 0 -0 +0 NoSolution
# fix break: contig_1:3526056 0 -0 +0 NoSolution
# fix break: contig_1:3527118 0 -0 +0 NoSolution
fix break: contig_1:3527464 3527352 -295 +296 BreakFix
# fix break: contig_1:3529315-3529414 0 -0 +0 NoSolution
# fix break: contig_1:3529767-3529838 0 -0 +0 NoSolution
fix break: contig_1:3530454-3530455 3530260 -370 +368 BreakFix
# fix break: contig_1:3532862 0 -0 +0 NoSolution
# fix break: contig_1:3533443-3533531 0 -0 +0 NoSolution
# fix break: contig_1:3533931-3533933 0 -0 +0 NoSolution
fix break: contig_1:3534350 3534193 -212 +204 BreakFix
fix break: contig_1:3535733-3535857 3535498 -415 +408 BreakFix
fix break: contig_1:3536403-3536542 3536225 -499 +475 BreakFix
fix break: contig_1:3538509-3538513 3538282 -367 +371 BreakFix
fix break: contig_1:3539785-3539918 3539638 -479 +472 BreakFix
# fix break: contig_1:3540491 0 -0 +0 NoSolution
# fix break: contig_1:3542301-3542762 0 -0 +0 NoSolution
# fix break: contig_1:3547258-3547283 0 -0 +0 NoSolution
# fix break: contig_1:3547486 0 -0 +0 NoSolution
fix break: contig_1:3550041 3549809 -345 +340 BreakFix
# fix break: contig_1:3550467-3550495 0 -0 +0 NoSolution
# fix break: contig_1:3550842 0 -0 +0 NoSolution
fix break: contig_1:3551614 3551430 -318 +315 BreakFix
# fix break: contig_1:3552368-3552497 0 -0 +0 NoSolution
fix break: contig_1:3556324 3556214 -275 +269 BreakFix
fix break: contig_1:3557915-3557916 3557830 -280 +272 BreakFix
# fix break: contig_1:3561178-3561180 0 -0 +0 NoSolution
# fix break: contig_1:3562072-3562610 0 -0 +0 NoSolution TandemRepeat 483
# fix break: contig_1:3563665 0 -0 +0 NoSolution TandemRepeat 483
fix break: contig_1:3563956 3563808 -383 +377 BreakFix
fix break: contig_1:3567777-3567787 3567635 -278 +276 BreakFix
fix break: contig_1:3568096-3568349 3567915 -669 +502 BreakFix
# fix break: contig_1:3569591 0 -0 +0 NoSolution
# fix break: contig_1:3570006 0 -0 +0 NoSolution
# fix break: contig_1:3570532-3570878 0 -0 +0 NoSolution
fix break: contig_1:3571900 3571683 -451 +448 BreakFix
# fix break: contig_1:3572284 0 -0 +0 NoSolution
# fix break: contig_1:3572788-3573566 0 -0 +0 NoSolution
fix break: contig_1:3574249 3574040 -452 +450 BreakFix
# fix break: contig_1:3575343 0 -0 +0 NoSolution
# fix break: contig_1:3576000-3576002 0 -0 +0 NoSolution
# fix break: contig_1:3576403 0 -0 +0 NoSolution
fix break: contig_1:3577693 3577584 -333 +327 BreakFix
# fix break: contig_1:3582675-3584548 0 -0 +0 NoSolution
fix break: contig_1:3585003-3585006 3584835 -285 +283 BreakFix
# fix break: contig_1:3586274-3586277 0 -0 +0 NoSolution
fix break: contig_1:3587746-3587854 3587750 -134 +132 BreakFix
# fix break: contig_1:3588593-3588659 0 -0 +0 NoSolution
# fix break: contig_1:3589268-3594130 0 -0 +0 NoSolution
# fix break: contig_1:3595589-3595590 0 -0 +0 NoSolution
fix break: contig_1:3597294 3597054 -457 +453 BreakFix
fix break: contig_1:3597994 3597830 -245 +241 BreakFix
# fix break: contig_1:3598577-3598687 0 -0 +0 NoSolution
# fix break: contig_1:3599251 0 -0 +0 NoSolution
# fix break: contig_1:3599958-3599971 0 -0 +0 NoSolution
fix break: contig_1:3600240-3600438 3600086 -546 +541 BreakFix
# fix break: contig_1:3601191-3601201 0 -0 +0 NoSolution
fix break: contig_1:3601486-3601506 3601350 -365 +365 BreakFix
# fix break: contig_1:3603381-3603493 0 -0 +0 NoSolution
# fix break: contig_1:3604063-3620736 0 -0 +0 NoSolution
fix break: contig_1:3621003-3621010 3620815 -432 +430 BreakFix
fix break: contig_1:3621349-3621391 3621169 -385 +384 BreakFix
fix break: contig_1:3624326-3632863 3624359 -8654 +408 BreakFix
# fix break: contig_1:3633428 0 -0 +0 NoSolution
# fix break: contig_1:3633698 0 -0 +0 NoSolution
fix break: contig_1:3634498-3634520 3634502 -224 +221 BreakFix
# fix break: contig_1:3635445-3635449 0 -0 +0 NoSolution
fix break: contig_1:3636197-3636399 3636102 -298 +291 BreakFix
fix break: contig_1:3636769-3636781 3636716 -229 +226 BreakFix
# fix break: contig_1:3637883-3637913 0 -0 +0 NoSolution
# fix break: contig_1:3639363-3639752 0 -0 +0 NoSolution
fix break: contig_1:3640354-3640446 3640298 -217 +212 BreakFix
# fix break: contig_1:3640991-3640997 0 -0 +0 NoSolution
fix break: contig_1:3641641-3641643 3641419 -225 +228 BreakFix
fix break: contig_1:3643577-3643652 3643366 -382 +340 BreakFix
# fix break: contig_1:3644191-3644263 0 -0 +0 NoSolution
# fix break: contig_1:3644512-3644541 0 -0 +0 NoSolution
# fix break: contig_1:3645148-3645157 0 -0 +0 NoSolution
fix break: contig_1:3646105-3646114 3646049 -307 +304 BreakFix
fix break: contig_1:3646502-3646505 3646343 -324 +319 BreakFix
# fix break: contig_1:3646876-3646879 0 -0 +0 NoSolution
fix break: contig_1:3647129 3646901 -372 +370 BreakFix
fix break: contig_1:3648286-3648424 3648162 -327 +324 BreakFix
# fix break: contig_1:3648748 0 -0 +0 NoSolution
# fix break: contig_1:3649514 0 -0 +0 NoSolution
fix break: contig_1:3650341-3650352 3650127 -464 +460 BreakFix
fix break: contig_1:3650590 3650353 -406 +402 BreakFix
# fix break: contig_1:3652087 0 -0 +0 NoSolution
# fix break: contig_1:3652352 0 -0 +0 NoSolution
fix break: contig_1:3652645-3653223 3652535 -521 +1295 BreakFix
fix break: contig_1:3653458-3653563 3653738 -61 +61 BreakFix
fix break: contig_1:3654134-3654142 3653926 -217 +219 BreakFix
# fix break: contig_1:3655849-3655888 0 -0 +0 NoSolution
# fix break: contig_1:3656258-3656294 0 -0 +0 NoSolution
# fix break: contig_1:3657564 0 -0 +0 NoSolution
# fix break: contig_1:3657942-3657989 0 -0 +0 NoSolution
# fix break: contig_1:3659373-3671110 0 -0 +0 NoSolution
# fix break: contig_1:3671347 0 -0 +0 NoSolution
fix break: contig_1:3673242-3673243 3673038 -447 +445 BreakFix
# fix break: contig_1:3674316 0 -0 +0 NoSolution
# fix break: contig_1:3675349-3675439 0 -0 +0 NoSolution
fix break: contig_1:3675949 3675811 -139 +135 BreakFix
fix break: contig_1:3676286 3676282 -215 +210 BreakFix
# fix break: contig_1:3677489-3678192 0 -0 +0 NoSolution
fix break: contig_1:3679367-3679413 3679257 -358 +354 BreakFix
# fix break: contig_1:3680068-3680836 0 -0 +0 NoSolution
# fix break: contig_1:3681107-3681298 0 -0 +0 NoSolution
# fix break: contig_1:3681566 0 -0 +0 NoSolution
fix break: contig_1:3682123-3682127 3681885 -472 +473 BreakFix
# fix break: contig_1:3683227-3683254 0 -0 +0 NoSolution
fix break: contig_1:3684324 3684082 -472 +467 BreakFix
# fix break: contig_1:3684884-3684935 0 -0 +0 NoSolution
fix break: contig_1:3685361-3685381 3685126 -430 +424 BreakFix
# fix break: contig_1:3688220-3688221 0 -0 +0 NoSolution
# fix break: contig_1:3689880-3690345 0 -0 +0 NoSolution
fix break: contig_1:3692286 3692044 -310 +305 BreakFix
# fix break: contig_1:3693283 0 -0 +0 NoSolution
# fix break: contig_1:3694739-3695422 0 -0 +0 NoSolution
# fix break: contig_1:3698259 0 -0 +0 NoSolution
# fix break: contig_1:3699505 0 -0 +0 NoSolution
# fix break: contig_1:3699752-3699783 0 -0 +0 NoSolution
# fix break: contig_1:3700129-3700404 0 -0 +0 NoSolution
# fix break: contig_1:3700972 0 -0 +0 NoSolution
# fix break: contig_1:3701926 0 -0 +0 NoSolution
# fix break: contig_1:3702685-3702909 0 -0 +0 NoSolution
# fix break: contig_1:3704368-3704783 0 -0 +0 NoSolution
fix break: contig_1:3705595-3705606 3705390 -439 +439 BreakFix
fix break: contig_1:3705921 3705830 -329 +326 BreakFix
# fix break: contig_1:3706208 0 -0 +0 NoSolution
# fix break: contig_1:3706758 0 -0 +0 NoSolution
fix break: contig_1:3707897-3707916 3707745 -386 +385 BreakFix
# fix break: contig_1:3708292 0 -0 +0 NoSolution
fix break: contig_1:3709004-3709005 3708827 -329 +332 BreakFix
# fix break: contig_1:3709944-3709954 0 -0 +0 NoSolution
fix break: contig_1:3712995 3712898 -335 +329 BreakFix
fix break: contig_1:3715230 3715067 -308 +305 BreakFix
# fix break: contig_1:3716210-3716697 0 -0 +0 NoSolution
# fix break: contig_1:3718379-3718388 0 -0 +0 NoSolution
fix break: contig_1:3720697-3720706 3720493 -267 +269 BreakFix
fix break: contig_1:3721307 3721089 -219 +217 BreakFix
fix break: contig_1:3722733-3723233 3722700 -754 +1525 BreakFix
fix break: contig_1:3723453 3723230 -436 +435 BreakFix
# fix break: contig_1:3724060-3724465 0 -0 +0 NoSolution
# fix break: contig_1:3726744 0 -0 +0 NoSolution
fix break: contig_1:3729960-3730065 3729842 -224 +219 BreakFix
# fix break: contig_1:3732647 0 -0 +0 NoSolution
fix break: contig_1:3733021-3733211 3732977 -400 +393 BreakFix
fix break: contig_1:3734713 3734540 -174 +172 BreakFix
fix break: contig_1:3736806-3736821 3736617 -317 +316 BreakFix
# fix break: contig_1:3738889 0 -0 +0 NoSolution
# fix break: contig_1:3739820-3739937 0 -0 +0 NoSolution
fix break: contig_1:3740395-3740628 3740336 -291 +286 BreakFix
fix break: contig_1:3741054-3741099 3740962 -326 +320 BreakFix
fix break: contig_1:3741744-3741882 3741680 -203 +200 BreakFix
fix break: contig_1:3742280-3742355 3742264 -320 +318 BreakFix
fix break: contig_1:3743114 3743001 -256 +252 BreakFix
# fix break: contig_1:3743732 0 -0 +0 NoSolution
fix break: contig_1:3744205-3744223 3744073 -386 +385 BreakFix
# fix break: contig_1:3745317 0 -0 +0 NoSolution
# fix break: contig_1:3745943 0 -0 +0 NoSolution
fix break: contig_1:3747009 3746770 -393 +385 BreakFix
# fix break: contig_1:3747627-3747628 0 -0 +0 NoSolution
# fix break: contig_1:3748454 0 -0 +0 NoSolution
# fix break: contig_1:3749660 0 -0 +0 NoSolution
fix break: contig_1:3751359-3751544 3751220 -380 +381 BreakFix
# fix break: contig_1:3751844-3751893 0 -0 +0 NoSolution
# fix break: contig_1:3753191 0 -0 +0 NoSolution
fix break: contig_1:3754645 3754426 -265 +257 BreakFix
fix break: contig_1:3755220-3755224 3755186 -38 +36 BreakFix
fix break: contig_1:3757620-3757668 3757619 -186 +180 BreakFix
fix break: contig_1:3759199-3759406 3759143 -234 +232 BreakFix
fix break: contig_1:3759781 3759712 -146 +141 BreakFix
fix break: contig_1:3760650-3760669 3760650 -17 +20 BreakFix
# fix break: contig_1:3761633 0 -0 +0 NoSolution
# fix break: contig_1:3761866 0 -0 +0 NoSolution
# fix break: contig_1:3763457-3763987 0 -0 +0 NoSolution
# fix break: contig_1:3764296 0 -0 +0 NoSolution
# fix break: contig_1:3765133 0 -0 +0 NoSolution
fix break: contig_1:3765827 3765782 -287 +285 BreakFix
fix break: contig_1:3766363 3766138 -452 +446 BreakFix
fix break: contig_1:3766589 3766367 -298 +292 BreakFix
# fix break: contig_1:3767255-3767301 0 -0 +0 NoSolution
fix break: contig_1:3767946 3767752 -317 +313 BreakFix
# fix break: contig_1:3768665 0 -0 +0 NoSolution
# fix break: contig_1:3769465-3769842 0 -0 +0 NoSolution
fix break: contig_1:3773538-3773587 3773364 -173 +171 BreakFix
# fix break: contig_1:3774641-3775198 0 -0 +0 NoSolution
# fix break: contig_1:3775466-3775467 0 -0 +0 NoSolution
fix break: contig_1:3776875-3776956 3776637 -320 +315 BreakFix
fix break: contig_1:3778615-3778628 3778380 -307 +307 BreakFix
fix break: contig_1:3778989-3779132 3779077 -138 +136 BreakFix
# fix break: contig_1:3780532 0 -0 +0 NoSolution
# fix break: contig_1:3783914 0 -0 +0 NoSolution
fix break: contig_1:3784904 3784688 -395 +395 BreakFix
fix break: contig_1:3785582 3785390 -371 +366 BreakFix
fix break: contig_1:3785976-3786201 3785764 -647 +632 BreakFix
# fix break: contig_1:3790479-3790605 0 -0 +0 NoSolution
fix break: contig_1:3790917-3790918 3790760 -389 +386 BreakFix
# fix break: contig_1:3791141-3791158 0 -0 +0 NoSolution
fix break: contig_1:3792989 3792836 -351 +346 BreakFix
fix break: contig_1:3794363-3794366 3794131 -438 +440 BreakFix
# fix break: contig_1:3795360-3795386 0 -0 +0 NoSolution
fix break: contig_1:3799428 3799369 -162 +157 BreakFix
# fix break: contig_1:3800206 0 -0 +0 NoSolution
fix break: contig_1:3801066 3800953 -271 +267 BreakFix
fix break: contig_1:3801404 3801223 -419 +417 BreakFix
fix break: contig_1:3802084-3802112 3801953 -132 +131 BreakFix
# fix break: contig_1:3803210 0 -0 +0 NoSolution
fix break: contig_1:3804504 3804269 -473 +467 BreakFix
# fix break: contig_1:3804757-3805661 0 -0 +0 NoSolution
# fix break: contig_1:3805908-3806863 0 -0 +0 NoSolution
# fix break: contig_1:3807099-3807201 0 -0 +0 NoSolution
# fix break: contig_1:3807430-3807817 0 -0 +0 NoSolution
# fix break: contig_1:3808019-3809610 0 -0 +0 NoSolution
fix break: contig_1:3811032 3810882 -220 +215 BreakFix
fix break: contig_1:3813440-3813547 3813293 -434 +435 BreakFix
fix break: contig_1:3814314-3814317 3814087 -396 +396 BreakFix
# fix break: contig_1:3817641-3817765 0 -0 +0 NoSolution
fix break: contig_1:3818488 3818492 -208 +205 BreakFix
fix break: contig_1:3819069-3819326 3818887 -601 +600 BreakFix
fix break: contig_1:3820306-3820339 3820096 -357 +353 BreakFix
fix break: contig_1:3820637-3820656 3820456 -235 +232 BreakFix
# fix break: contig_1:3822722-3822805 0 -0 +0 NoSolution
# fix break: contig_1:3824403-3824432 0 -0 +0 NoSolution
# fix break: contig_1:3825036-3825215 0 -0 +0 NoSolution
fix break: contig_1:3826957-3826982 3826816 -172 +166 BreakFix
fix break: contig_1:3827583-3827596 3827364 -286 +285 BreakFix
# fix break: contig_1:3829248-3829249 0 -0 +0 NoSolution
fix break: contig_1:3830567 3830463 -105 +103 BreakFix
# fix break: contig_1:3831026-3831028 0 -0 +0 NoSolution
fix break: contig_1:3834221-3834248 3834225 -229 +224 BreakFix
fix break: contig_1:3834754-3834756 3834550 -339 +344 BreakFix
fix break: contig_1:3835332-3835339 3835128 -395 +396 BreakFix
fix break: contig_1:3836412 3836192 -461 +457 BreakFix
# fix break: contig_1:3836622 0 -0 +0 NoSolution
fix break: contig_1:3837626-3837632 3837529 -146 +145 BreakFix
# fix break: contig_1:3841021-3841023 0 -0 +0 NoSolution
# fix break: contig_1:3841620-3841714 0 -0 +0 NoSolution
fix break: contig_1:3842332-3842454 3842240 -214 +211 BreakFix
# fix break: contig_1:3842786-3842886 0 -0 +0 NoSolution
fix break: contig_1:3844271-3844281 3844040 -464 +463 BreakFix
# fix break: contig_1:3846553-3846950 0 -0 +0 NoSolution
fix break: contig_1:3847446-3849632 3847226 -2645 +1068 BreakFix
fix break: contig_1:3850389 3850286 -104 +101 BreakFix
fix break: contig_1:3851257-3851346 3851243 -325 +341 BreakFix
fix break: contig_1:3852822 3852713 -302 +306 BreakFix
fix break: contig_1:3853814 3853813 -201 +195 BreakFix
fix break: contig_1:3854383-3854384 3854294 -136 +134 BreakFix
fix break: contig_1:3855321-3855324 3855158 -304 +298 BreakFix
fix break: contig_1:3857054-3857366 3856888 -508 +506 BreakFix
# fix break: contig_1:3857622-3858080 0 -0 +0 NoSolution
fix break: contig_1:3862456-3862525 3862282 -236 +237 BreakFix
fix break: contig_1:3863020-3863102 3863007 -96 +96 BreakFix
fix break: contig_1:3864798 3864606 -270 +268 BreakFix
# fix break: contig_1:3865563-3866799 0 -0 +0 NoSolution
fix break: contig_1:3867434-3867874 3867219 -749 +737 BreakFix
# fix break: contig_1:3868226 0 -0 +0 NoSolution
# fix break: contig_1:3869850-3869851 0 -0 +0 NoSolution
fix break: contig_1:3870123 3869906 -439 +436 BreakFix
fix break: contig_1:3870793 3870739 -163 +157 BreakFix
# fix break: contig_1:3873858 0 -0 +0 NoSolution
fix break: contig_1:3876016-3876043 3875927 -139 +141 BreakFix
# fix break: contig_1:3876680 0 -0 +0 NoSolution
fix break: contig_1:3876985-3877184 3876906 -502 +502 BreakFix
# fix break: contig_1:3878607-3879153 0 -0 +0 NoSolution
fix break: contig_1:3881790 3881586 -419 +417 BreakFix
fix break: contig_1:3883669 3883597 -290 +285 BreakFix
fix break: contig_1:3887630 3887503 -320 +315 BreakFix
# fix break: contig_1:3890388-3890420 0 -0 +0 NoSolution
# fix break: contig_1:3890801-3890991 0 -0 +0 NoSolution
# fix break: contig_1:3891310-3891322 0 -0 +0 NoSolution
fix break: contig_1:3892895 3892785 -345 +339 BreakFix
fix break: contig_1:3893132-3893228 3892899 -418 +412 BreakFix
# fix break: contig_1:3893606-3893711 0 -0 +0 NoSolution
# fix break: contig_1:3894563-3894709 0 -0 +0 NoSolution
# fix break: contig_1:3896994-3897011 0 -0 +0 NoSolution
# fix break: contig_1:3897591-3897729 0 -0 +0 NoSolution
# fix break: contig_1:3898657-3902125 0 -0 +0 NoSolution
# fix break: contig_1:3902397-3902663 0 -0 +0 NoSolution
# fix break: contig_1:3902891-3903949 0 -0 +0 NoSolution
# fix break: contig_1:3904154-3904488 0 -0 +0 NoSolution
# fix break: contig_1:3904921-3904945 0 -0 +0 NoSolution
# fix break: contig_1:3905242-3905245 0 -0 +0 NoSolution
# fix break: contig_1:3905966 0 -0 +0 NoSolution
# fix break: contig_1:3906824-3906825 0 -0 +0 NoSolution
# fix break: contig_1:3907083 0 -0 +0 NoSolution
# fix break: contig_1:3907461 0 -0 +0 NoSolution
# fix break: contig_1:3907865-3907897 0 -0 +0 NoSolution
# fix break: contig_1:3910003 0 -0 +0 NoSolution
# fix break: contig_1:3911454-3911473 0 -0 +0 NoSolution
# fix break: contig_1:3912582 0 -0 +0 NoSolution
# fix break: contig_1:3914416-3914601 0 -0 +0 NoSolution
fix break: contig_1:3915549-3915558 3915338 -459 +460 BreakFix
fix break: contig_1:3917097-3917252 3916932 -443 +396 BreakFix
# fix break: contig_1:3917646-3917667 0 -0 +0 NoSolution
fix break: contig_1:3919520-3919580 3919469 -52 +49 BreakFix
# fix break: contig_1:3920059-3920230 0 -0 +0 NoSolution
fix break: contig_1:3923021-3923025 3922893 -234 +229 BreakFix
# fix break: contig_1:3925368 0 -0 +0 NoSolution
# fix break: contig_1:3925643-3925747 0 -0 +0 NoSolution
# fix break: contig_1:3926329 0 -0 +0 NoSolution
# fix break: contig_1:3927079-3933749 0 -0 +0 NoSolution
# fix break: contig_1:3934031-3934178 0 -0 +0 NoSolution
fix break: contig_1:3939127-3939130 3939065 -265 +264 BreakFix
# fix break: contig_1:3939988 0 -0 +0 NoSolution
fix break: contig_1:3940753 3940595 -359 +359 BreakFix
# fix break: contig_1:3941428-3941583 0 -0 +0 NoSolution
# fix break: contig_1:3942261-3942959 0 -0 +0 NoSolution
# fix break: contig_1:3943369-3943866 0 -0 +0 NoSolution
fix break: contig_1:3944084-3944114 3943847 -452 +430 BreakFix
fix break: contig_1:3945237 3945019 -380 +374 BreakFix
fix break: contig_1:3946129-3946148 3945913 -477 +476 BreakFix
fix break: contig_1:3946368 3946128 -427 +427 BreakFix
# fix break: contig_1:3948411 0 -0 +0 NoSolution
# fix break: contig_1:3948634 0 -0 +0 NoSolution
# fix break: contig_1:3950568-3956988 0 -0 +0 NoSolution
# fix break: contig_1:3957351-3957896 0 -0 +0 NoSolution TandemRepeat 92
# fix break: contig_1:3958137-3958567 0 -0 +0 NoSolution TandemRepeat 92
# fix break: contig_1:3959076 0 -0 +0 NoSolution TandemRepeat 92
# fix break: contig_1:3960439-3960675 0 -0 +0 NoSolution
# fix break: contig_1:3960957 0 -0 +0 NoSolution
# fix break: contig_1:3965998-3966013 0 -0 +0 NoSolution
# fix break: contig_1:3966730 0 -0 +0 NoSolution
fix break: contig_1:3968146-3968149 3968000 -389 +390 BreakFix
fix break: contig_1:3968388-3968672 3968204 -699 +698 BreakFix
# fix break: contig_1:3970130-3970156 0 -0 +0 NoSolution
# fix break: contig_1:3973074-3973090 0 -0 +0 NoSolution
fix break: contig_1:3973608-3973609 3973368 -462 +466 BreakFix
# fix break: contig_1:3976245-3976256 0 -0 +0 NoSolution
fix break: contig_1:3977945-3977963 3977736 -447 +440 BreakFix
# fix break: contig_1:3978560-3978563 0 -0 +0 NoSolution
# fix break: contig_1:3979076-3979078 0 -0 +0 NoSolution
fix break: contig_1:3979448-3979694 3979342 -391 +483 BreakFix
fix break: contig_1:3980981 3980867 -321 +321 BreakFix
fix break: contig_1:3981545 3981345 -423 +420 BreakFix
# fix break: contig_1:3982391-3982638 0 -0 +0 NoSolution
# fix break: contig_1:3983936-3983938 0 -0 +0 NoSolution
# fix break: contig_1:3985687 0 -0 +0 NoSolution
fix break: contig_1:3986120 3985922 -401 +394 BreakFix
# fix break: contig_1:3986533-3986636 0 -0 +0 NoSolution
fix break: contig_1:3989095-3989352 3988870 -706 +708 BreakFix
# fix break: contig_1:3990197-3990643 0 -0 +0 NoSolution
# fix break: contig_1:3991023-3991227 0 -0 +0 NoSolution
# fix break: contig_1:3991468-3991876 0 -0 +0 NoSolution
fix break: contig_1:3992400-3992402 3992176 -372 +373 BreakFix
# fix break: contig_1:3992717-3992885 0 -0 +0 NoSolution
# fix break: contig_1:3993575-3993741 0 -0 +0 NoSolution
# fix break: contig_1:3994057-3994070 0 -0 +0 NoSolution
# fix break: contig_1:3994404-3994789 0 -0 +0 NoSolution
# fix break: contig_1:3995631-3995640 0 -0 +0 NoSolution
# fix break: contig_1:3995989-3996020 0 -0 +0 NoSolution
fix break: contig_1:3996299-3996500 3996180 -547 +539 BreakFix
fix break: contig_1:3997147-3997407 3996918 -726 +727 BreakFix
# fix break: contig_1:3997733-3997980 0 -0 +0 NoSolution
# fix break: contig_1:3998492-3998879 0 -0 +0 NoSolution
# fix break: contig_1:3999115-3999118 0 -0 +0 NoSolution
# fix break: contig_1:3999834-3999970 0 -0 +0 NoSolution
# fix break: contig_1:4000602-4000708 0 -0 +0 NoSolution
# fix break: contig_1:4001081-4001089 0 -0 +0 NoSolution
# fix break: contig_1:4001862-4001874 0 -0 +0 NoSolution
fix break: contig_1:4002204 4001988 -426 +423 BreakFix
# fix break: contig_1:4002959 0 -0 +0 NoSolution
# fix break: contig_1:4003161-4003298 0 -0 +0 NoSolution
# fix break: contig_1:4003777-4003780 0 -0 +0 NoSolution
# fix break: contig_1:4004600-4004611 0 -0 +0 NoSolution
# fix break: contig_1:4005669 0 -0 +0 NoSolution
fix break: contig_1:4006000 4005917 -327 +321 BreakFix
# fix break: contig_1:4007342-4007613 0 -0 +0 NoSolution
# fix break: contig_1:4011341 0 -0 +0 NoSolution
# fix break: contig_1:4011935-4011952 0 -0 +0 NoSolution
# fix break: contig_1:4012577-4012636 0 -0 +0 NoSolution
fix break: contig_1:4013970 4013788 -346 +340 BreakFix
# fix break: contig_1:4015777-4015780 0 -0 +0 NoSolution
fix break: contig_1:4017316-4017617 4017110 -723 +469 BreakFix
# fix break: contig_1:4019926-4020036 0 -0 +0 NoSolution
fix break: contig_1:4021210-4021350 4020972 -592 +582 BreakFix
# fix break: contig_1:4021837-4021852 0 -0 +0 NoSolution
# fix break: contig_1:4022125-4022242 0 -0 +0 NoSolution
# fix break: contig_1:4022488 0 -0 +0 NoSolution
# fix break: contig_1:4022860-4023230 0 -0 +0 NoSolution
fix break: contig_1:4023559-4023891 4023339 -767 +764 BreakFix
# fix break: contig_1:4024588-4025017 0 -0 +0 NoSolution
# fix break: contig_1:4025250 0 -0 +0 NoSolution
# fix break: contig_1:4027146-4027328 0 -0 +0 NoSolution
# fix break: contig_1:4027562-4029547 0 -0 +0 NoSolution
# fix break: contig_1:4029792-4029820 0 -0 +0 NoSolution
# fix break: contig_1:4030150-4035894 0 -0 +0 NoSolution
# fix break: contig_1:4036329-4036483 0 -0 +0 NoSolution
# fix break: contig_1:4038297 0 -0 +0 NoSolution
# fix break: contig_1:4039158-4039803 0 -0 +0 NoSolution
# fix break: contig_1:4040106-4040122 0 -0 +0 NoSolution
# fix break: contig_1:4040579-4040594 0 -0 +0 NoSolution
# fix break: contig_1:4040839-4040898 0 -0 +0 NoSolution
# fix break: contig_1:4041147-4041156 0 -0 +0 NoSolution
# fix break: contig_1:4043402 0 -0 +0 NoSolution
fix break: contig_1:4043756-4043758 4043567 -322 +321 BreakFix
# fix break: contig_1:4045752 0 -0 +0 NoSolution
fix break: contig_1:4048137 4047937 -369 +366 BreakFix
# fix break: contig_1:4048750 0 -0 +0 NoSolution
# fix break: contig_1:4052187 0 -0 +0 NoSolution
fix break: contig_1:4052604-4052605 4052443 -353 +353 BreakFix
# fix break: contig_1:4053888 0 -0 +0 NoSolution
fix break: contig_1:4054464-4054667 4054467 -409 +405 BreakFix
fix break: contig_1:4057423-4057428 4057227 -390 +391 BreakFix
fix break: contig_1:4058225 4058228 -181 +177 BreakFix
fix break: contig_1:4059981 4059739 -409 +404 BreakFix
# fix break: contig_1:4061195-4061196 0 -0 +0 NoSolution
# fix break: contig_1:4061964-4062087 0 -0 +0 NoSolution
# fix break: contig_1:4062495-4063022 0 -0 +0 NoSolution
# fix break: contig_1:4064097 0 -0 +0 NoSolution
# fix break: contig_1:4064462 0 -0 +0 NoSolution
# fix break: contig_1:4064808-4064809 0 -0 +0 NoSolution
# fix break: contig_1:4065326-4065331 0 -0 +0 NoSolution
fix break: contig_1:4065880-4066819 4065804 -1192 +1170 BreakFix
# fix break: contig_1:4069906-4069909 0 -0 +0 NoSolution
# fix break: contig_1:4070338-4070342 0 -0 +0 NoSolution
# fix break: contig_1:4070706-4070829 0 -0 +0 NoSolution
# fix break: contig_1:4071957-4073593 0 -0 +0 NoSolution
# fix break: contig_1:4073837-4075585 0 -0 +0 NoSolution
# fix break: contig_1:4075994-4078441 0 -0 +0 NoSolution
# fix break: contig_1:4078900-4079078 0 -0 +0 NoSolution
# fix break: contig_1:4079348-4079357 0 -0 +0 NoSolution
# fix break: contig_1:4080966-4080976 0 -0 +0 NoSolution
fix break: contig_1:4083096-4083196 4082977 -271 +270 BreakFix
# fix break: contig_1:4083458-4083520 0 -0 +0 NoSolution
# fix break: contig_1:4083759-4083761 0 -0 +0 NoSolution
# fix break: contig_1:4084787 0 -0 +0 NoSolution
# fix break: contig_1:4085582 0 -0 +0 NoSolution
# fix break: contig_1:4087368 0 -0 +0 NoSolution
fix break: contig_1:4088258-4088272 4088098 -200 +196 BreakFix
# fix break: contig_1:4089076-4089130 0 -0 +0 NoSolution
# fix break: contig_1:4089970 0 -0 +0 NoSolution
# fix break: contig_1:4090678-4090790 0 -0 +0 NoSolution
# fix break: contig_1:4091563-4091569 0 -0 +0 NoSolution
# fix break: contig_1:4092181-4092296 0 -0 +0 NoSolution
# fix break: contig_1:4092690-4092732 0 -0 +0 NoSolution
# fix break: contig_1:4093262-4093490 0 -0 +0 NoSolution
fix break: contig_1:4093884 4093663 -357 +356 BreakFix
# fix break: contig_1:4094197-4094578 0 -0 +0 NoSolution
# fix break: contig_1:4094922-4094964 0 -0 +0 NoSolution
fix break: contig_1:4095341-4095474 4095131 -555 +429 BreakFix
# fix break: contig_1:4096199-4096203 0 -0 +0 NoSolution
fix break: contig_1:4097500-4097502 4097302 -437 +439 BreakFix
fix break: contig_1:4097704-4097808 4097490 -364 +362 BreakFix
fix break: contig_1:4099520-4099555 4099491 -221 +235 BreakFix
# fix break: contig_1:4100624-4100745 0 -0 +0 NoSolution
# fix break: contig_1:4101300 0 -0 +0 NoSolution
# fix break: contig_1:4102718 0 -0 +0 NoSolution
# fix break: contig_1:4103949 0 -0 +0 NoSolution
# fix break: contig_1:4104316-4104519 0 -0 +0 NoSolution
fix break: contig_1:4105067-4105217 4104834 -626 +625 BreakFix
fix break: contig_1:4107279-4107468 4107236 -330 +324 BreakFix
# fix break: contig_1:4108409 0 -0 +0 NoSolution
fix break: contig_1:4111410 4111207 -354 +354 BreakFix
fix break: contig_1:4113329-4113546 4113468 -282 +190 BreakFix
# fix break: contig_1:4113749-4113755 0 -0 +0 NoSolution
fix break: contig_1:4114081-4114085 4113996 -239 +237 BreakFix
fix break: contig_1:4115338-4115378 4115105 -488 +483 BreakFix
# fix break: contig_1:4116120-4116409 0 -0 +0 NoSolution
fix break: contig_1:4116792 4116566 -434 +425 BreakFix
# fix break: contig_1:4116999 0 -0 +0 NoSolution
fix break: contig_1:4118017 4117830 -366 +367 BreakFix
# fix break: contig_1:4119902 0 -0 +0 NoSolution
# fix break: contig_1:4120170 0 -0 +0 NoSolution
fix break: contig_1:4122100 4121995 -106 +103 BreakFix
# fix break: contig_1:4123872 0 -0 +0 NoSolution
fix break: contig_1:4124428 4124229 -411 +406 BreakFix
# fix break: contig_1:4124780-4124940 0 -0 +0 NoSolution
fix break: contig_1:4125150-4125557 4124944 -785 +785 BreakFix
# fix break: contig_1:4125817-4126155 0 -0 +0 NoSolution
# fix break: contig_1:4126778-4126793 0 -0 +0 NoSolution
# fix break: contig_1:4128154-4128322 0 -0 +0 NoSolution
fix break: contig_1:4129251 4129014 -349 +344 BreakFix
fix break: contig_1:4131471-4131478 4131333 -382 +379 BreakFix
# fix break: contig_1:4133113-4133435 0 -0 +0 NoSolution
# fix break: contig_1:4134146 0 -0 +0 NoSolution
fix break: contig_1:4137193-4137205 4137059 -19 +17 BreakFix
fix break: contig_1:4137586-4137587 4137509 -194 +193 BreakFix
fix break: contig_1:4138468-4138791 4138316 -634 +631 BreakFix
# fix break: contig_1:4139341-4139572 0 -0 +0 NoSolution
fix break: contig_1:4140747 4140688 -282 +282 BreakFix
fix break: contig_1:4141197-4141208 4140973 -317 +313 BreakFix
fix break: contig_1:4142471 4142251 -461 +460 BreakFix
# fix break: contig_1:4145897 0 -0 +0 NoSolution
# fix break: contig_1:4146175-4146183 0 -0 +0 NoSolution
# fix break: contig_1:4146610-4146892 0 -0 +0 NoSolution
fix break: contig_1:4147106-4147256 4146896 -534 +523 BreakFix
# fix break: contig_1:4147477-4147479 0 -0 +0 NoSolution
fix break: contig_1:4147941-4147946 4147709 -429 +430 BreakFix
fix break: contig_1:4149603-4149668 4149367 -478 +476 BreakFix
# fix break: contig_1:4150253-4150284 0 -0 +0 NoSolution
fix break: contig_1:4151727 4151726 -238 +232 BreakFix
fix break: contig_1:4154652-4154659 4154654 -51 +49 BreakFix
# fix break: contig_1:4156395-4156401 0 -0 +0 NoSolution
fix break: contig_1:4157337-4157352 4157152 -381 +383 BreakFix
# fix break: contig_1:4158371-4158548 0 -0 +0 NoSolution
# fix break: contig_1:4158782-4158798 0 -0 +0 NoSolution TandemRepeat 113
# fix break: contig_1:4160124-4160181 0 -0 +0 NoSolution TandemRepeat 113
# fix break: contig_1:4160412-4160608 0 -0 +0 NoSolution TandemRepeat 113
# fix break: contig_1:4161527-4161532 0 -0 +0 NoSolution TandemRepeat 113
# fix break: contig_1:4164178-4164244 0 -0 +0 NoSolution
fix break: contig_1:4164674 4164510 -201 +200 BreakFix
# fix break: contig_1:4164965-4164967 0 -0 +0 NoSolution
fix break: contig_1:4165990 4165848 -352 +347 BreakFix
# fix break: contig_1:4166930-4166937 0 -0 +0 NoSolution
fix break: contig_1:4167550-4167573 4167509 -187 +185 BreakFix
# fix break: contig_1:4170023-4170599 0 -0 +0 NoSolution
fix break: contig_1:4171000-4178187 4170857 -7491 +839 BreakFix
# fix break: contig_1:4179312-4179501 0 -0 +0 NoSolution
# fix break: contig_1:4180013-4180024 0 -0 +0 NoSolution
fix break: contig_1:4180471 4180294 -178 +178 BreakFix
# fix break: contig_1:4181008-4181080 0 -0 +0 NoSolution
fix break: contig_1:4181426-4181572 4181369 -201 +204 BreakFix
# fix break: contig_1:4182131-4182247 0 -0 +0 NoSolution
# fix break: contig_1:4182810-4182841 0 -0 +0 NoSolution
fix break: contig_1:4183343-4183490 4183188 -463 +464 BreakFix
# fix break: contig_1:4184032-4184048 0 -0 +0 NoSolution
# fix break: contig_1:4185499-4185504 0 -0 +0 NoSolution
# fix break: contig_1:4186306-4186362 0 -0 +0 NoSolution
fix break: contig_1:4187082-4187170 4187029 -360 +264 BreakFix
# fix break: contig_1:4187933-4187937 0 -0 +0 NoSolution
# fix break: contig_1:4189402-4189410 0 -0 +0 NoSolution
fix break: contig_1:4189676 4189664 -106 +103 BreakFix
# fix break: contig_1:4190258-4190764 0 -0 +0 NoSolution
# fix break: contig_1:4191093-4191097 0 -0 +0 NoSolution
# fix break: contig_1:4191551-4191556 0 -0 +0 NoSolution
# fix break: contig_1:4191783-4191934 0 -0 +0 NoSolution
# fix break: contig_1:4193667 0 -0 +0 NoSolution
fix break: contig_1:4194331-4194341 4194121 -258 +248 BreakFix
fix break: contig_1:4195041 4194923 -331 +333 BreakFix
fix break: contig_1:4196598-4196604 4196391 -402 +399 BreakFix
fix break: contig_1:4200361 4200125 -316 +310 BreakFix
fix break: contig_1:4202346-4202378 4202121 -477 +471 BreakFix
# fix break: contig_1:4202741-4202926 0 -0 +0 NoSolution
# fix break: contig_1:4204212 0 -0 +0 NoSolution
fix break: contig_1:4204983 4204890 -94 +90 BreakFix
# fix break: contig_1:4206645 0 -0 +0 NoSolution
fix break: contig_1:4209194-4209195 4209013 -384 +380 BreakFix
fix break: contig_1:4209747-4209763 4209711 -269 +270 BreakFix
# fix break: contig_1:4210620-4210653 0 -0 +0 NoSolution
# fix break: contig_1:4213129 0 -0 +0 NoSolution
# fix break: contig_1:4214330 0 -0 +0 NoSolution
# fix break: contig_1:4216656-4216758 0 -0 +0 NoSolution
# fix break: contig_1:4217545-4217551 0 -0 +0 NoSolution
# fix break: contig_1:4219165-4219339 0 -0 +0 NoSolution
# fix break: contig_1:4220076 0 -0 +0 NoSolution
# fix break: contig_1:4220583-4220612 0 -0 +0 NoSolution
# fix break: contig_1:4221311 0 -0 +0 NoSolution
# fix break: contig_1:4224367-4226934 0 -0 +0 NoSolution
fix break: contig_1:4227263-4227268 4227053 -459 +459 BreakFix
# fix break: contig_1:4228225-4228230 0 -0 +0 NoSolution
fix break: contig_1:4229114-4229116 4228941 -419 +417 BreakFix
# fix break: contig_1:4229688 0 -0 +0 NoSolution
fix break: contig_1:4231600 4231399 -356 +354 BreakFix
fix break: contig_1:4234325-4234342 4234116 -445 +439 BreakFix
# fix break: contig_1:4234560-4234563 0 -0 +0 NoSolution
# fix break: contig_1:4237660-4237724 0 -0 +0 NoSolution
fix break: contig_1:4238845-4239048 4238642 -457 +453 BreakFix
# fix break: contig_1:4239377-4239407 0 -0 +0 NoSolution
fix break: contig_1:4239836 4239736 -290 +286 BreakFix
# fix break: contig_1:4240953-4242693 0 -0 +0 NoSolution
fix break: contig_1:4244030-4244138 4243840 -400 +392 BreakFix
fix break: contig_1:4246014-4246079 4245884 -196 +190 BreakFix
# fix break: contig_1:4246758 0 -0 +0 NoSolution
fix break: contig_1:4247680-4247806 4247498 -309 +304 BreakFix
fix break: contig_1:4248172-4248239 4248176 -281 +277 BreakFix
fix break: contig_1:4248698-4248937 4248459 -712 +1482 BreakFix
# fix break: contig_1:4249170 0 -0 +0 NoSolution
fix break: contig_1:4249758-4250751 4249860 -799 +235 BreakFix
fix break: contig_1:4255283-4255291 4255058 -434 +435 BreakFix
# fix break: contig_1:4256082 0 -0 +0 NoSolution TandemRepeat 111
# fix break: contig_1:4256737 0 -0 +0 NoSolution TandemRepeat 111
# fix break: contig_1:4257494-4257542 0 -0 +0 NoSolution TandemRepeat 111
# fix break: contig_1:4258143 0 -0 +0 NoSolution TandemRepeat 111
fix break: contig_1:4258807-4258840 4258631 -326 +326 BreakFix
fix break: contig_1:4261286-4261287 4261154 -235 +232 BreakFix
# fix break: contig_1:4263509 0 -0 +0 NoSolution
# fix break: contig_1:4266094 0 -0 +0 NoSolution
fix break: contig_1:4267177 4266967 -441 +437 BreakFix
fix break: contig_1:4267383-4267386 4267181 -381 +377 BreakFix
# fix break: contig_1:4269045-4269046 0 -0 +0 NoSolution
# fix break: contig_1:4269275 0 -0 +0 NoSolution
# fix break: contig_1:4269805 0 -0 +0 NoSolution
# fix break: contig_1:4271042-4271043 0 -0 +0 NoSolution
fix break: contig_1:4271343 4271188 -375 +370 BreakFix
fix break: contig_1:4271562 4271347 -405 +402 BreakFix
# fix break: contig_1:4271907 0 -0 +0 NoSolution
# fix break: contig_1:4275286-4275295 0 -0 +0 NoSolution
# fix break: contig_1:4275581 0 -0 +0 NoSolution
# fix break: contig_1:4275867-4275887 0 -0 +0 NoSolution
# fix break: contig_1:4276362 0 -0 +0 NoSolution
# fix break: contig_1:4276718 0 -0 +0 NoSolution
# fix break: contig_1:4277175 0 -0 +0 NoSolution
# fix break: contig_1:4278227 0 -0 +0 NoSolution
fix break: contig_1:4278560-4278580 4278331 -273 +268 BreakFix
# fix break: contig_1:4278989-4279008 0 -0 +0 NoSolution
# fix break: contig_1:4279278-4279279 0 -0 +0 NoSolution
# fix break: contig_1:4279540-4279541 0 -0 +0 NoSolution
fix break: contig_1:4282385 4282389 -75 +74 BreakFix
# fix break: contig_1:4286527-4286545 0 -0 +0 NoSolution
fix break: contig_1:4288782-4288788 4288735 -196 +198 BreakFix
fix break: contig_1:4289165 4288930 -254 +257 BreakFix
fix break: contig_1:4289639-4289857 4289568 -495 +486 BreakFix
# fix break: contig_1:4290959 0 -0 +0 NoSolution
# fix break: contig_1:4291736 0 -0 +0 NoSolution
# fix break: contig_1:4292086-4292341 0 -0 +0 NoSolution
# fix break: contig_1:4292553-4292725 0 -0 +0 NoSolution
fix break: contig_1:4294493 4294391 -225 +220 BreakFix
# fix break: contig_1:4296881 0 -0 +0 NoSolution
# fix break: contig_1:4297667-4297674 0 -0 +0 NoSolution
# fix break: contig_1:4298458-4298587 0 -0 +0 NoSolution
# fix break: contig_1:4299048-4300511 0 -0 +0 NoSolution
fix break: contig_1:4301068 4300897 -279 +273 BreakFix
fix break: contig_1:4301746 4301656 -330 +324 BreakFix
fix break: contig_1:4301985 4301750 -479 +473 BreakFix
# fix break: contig_1:4303137 0 -0 +0 NoSolution
# fix break: contig_1:4303676-4303710 0 -0 +0 NoSolution
# fix break: contig_1:4304727 0 -0 +0 NoSolution
# fix break: contig_1:4305348-4305764 0 -0 +0 NoSolution
fix break: contig_1:4310209 4310026 -315 +317 BreakFix
# fix break: contig_1:4312682 0 -0 +0 NoSolution
fix break: contig_1:4313688-4314711 4313453 -1320 +814 BreakFix
fix break: contig_1:4315261-4315402 4315021 -624 +615 BreakFix
# fix break: contig_1:4315716-4315717 0 -0 +0 NoSolution
# fix break: contig_1:4316228-4316891 0 -0 +0 NoSolution
# fix break: contig_1:4317265 0 -0 +0 NoSolution
fix break: contig_1:4322159 4322163 -144 +140 BreakFix
fix break: contig_1:4322766-4322909 4322693 -447 +445 BreakFix
fix break: contig_1:4325085-4325173 4324946 -318 +345 BreakFix
# fix break: contig_1:4325461 0 -0 +0 NoSolution
fix break: contig_1:4326075-4326092 4325873 -357 +354 BreakFix
fix break: contig_1:4327411-4327412 4327187 -143 +139 BreakFix
# fix break: contig_1:4327740 0 -0 +0 NoSolution
fix break: contig_1:4328623 4328429 -431 +426 BreakFix
fix break: contig_1:4329491 4329495 -34 +31 BreakFix
# fix break: contig_1:4330248-4330249 0 -0 +0 NoSolution
# fix break: contig_1:4331886 0 -0 +0 NoSolution
fix break: contig_1:4333946 4333791 -346 +341 BreakFix
# fix break: contig_1:4334988 0 -0 +0 NoSolution
fix break: contig_1:4338312-4338406 4338100 -510 +505 BreakFix
# fix break: contig_1:4338609 0 -0 +0 NoSolution
fix break: contig_1:4339438 4339215 -395 +389 BreakFix
# fix break: contig_1:4339903-4340103 0 -0 +0 NoSolution
# fix break: contig_1:4340399 0 -0 +0 NoSolution
# fix break: contig_1:4341270-4341458 0 -0 +0 NoSolution
# fix break: contig_1:4341708-4341888 0 -0 +0 NoSolution
# fix break: contig_1:4342100-4342148 0 -0 +0 NoSolution
# fix break: contig_1:4342380-4342997 0 -0 +0 NoSolution
# fix break: contig_1:4344623-4344874 0 -0 +0 NoSolution
# fix break: contig_1:4345459 0 -0 +0 NoSolution
# fix break: contig_1:4346167 0 -0 +0 NoSolution
# fix break: contig_1:4348163-4348165 0 -0 +0 NoSolution
# fix break: contig_1:4349877-4350324 0 -0 +0 NoSolution
fix break: contig_1:4351103-4351110 4350876 -228 +225 BreakFix
# fix break: contig_1:4354280-4354285 0 -0 +0 NoSolution
fix break: contig_1:4354556-4354568 4354355 -435 +435 BreakFix
# fix break: contig_1:4355620-4355708 0 -0 +0 NoSolution
# fix break: contig_1:4355988 0 -0 +0 NoSolution
# fix break: contig_1:4356545-4356842 0 -0 +0 NoSolution
fix break: contig_1:4358382-4358384 4358153 -298 +298 BreakFix
# fix break: contig_1:4359000 0 -0 +0 NoSolution
# fix break: contig_1:4362180-4373643 0 -0 +0 NoSolution
# fix break: contig_1:4373955-4374160 0 -0 +0 NoSolution
# fix break: contig_1:4374414-4375109 0 -0 +0 NoSolution
# fix break: contig_1:4375381-4413375 0 -0 +0 NoSolution
# fix break: contig_1:4414941 0 -0 +0 NoSolution
fix break: contig_1:4415770 4415769 -213 +205 BreakFix
fix break: contig_1:4415981 4415769 -336 +326 BreakFix
# fix break: contig_1:4416745-4416826 0 -0 +0 NoSolution
# fix break: contig_1:4418496-4418498 0 -0 +0 NoSolution
# fix break: contig_1:4418982-4419151 0 -0 +0 NoSolution
# fix break: contig_1:4421797-4421807 0 -0 +0 NoSolution
fix break: contig_1:4423115-4423327 4422925 -485 +470 BreakFix
fix break: contig_1:4424911-4425150 4424768 -513 +506 BreakFix
fix break: contig_1:4425829-4425938 4425649 -483 +486 BreakFix
fix break: contig_1:4426916 4426724 -398 +393 BreakFix
# fix break: contig_1:4427573 0 -0 +0 NoSolution
# fix break: contig_1:4428708-4428714 0 -0 +0 NoSolution
fix break: contig_1:4430684-4431003 4430551 -644 +642 BreakFix
# fix break: contig_1:4431552-4431554 0 -0 +0 NoSolution
fix break: contig_1:4432051-4432074 4431873 -200 +196 BreakFix
# fix break: contig_1:4432979-4432989 0 -0 +0 NoSolution
# fix break: contig_1:4433226-4433403 0 -0 +0 NoSolution
# fix break: contig_1:4434182 0 -0 +0 NoSolution
# fix break: contig_1:4435476-4444351 0 -0 +0 NoSolution
# fix break: contig_1:4444632 0 -0 +0 NoSolution
fix break: contig_1:4452172-4452379 4452139 -467 +452 BreakFix
# fix break: contig_1:4453195-4453299 0 -0 +0 NoSolution
# fix break: contig_1:4455892-4455936 0 -0 +0 NoSolution
fix break: contig_1:4457652-4457694 4457518 -418 +414 BreakFix
# fix break: contig_1:4459004-4460124 0 -0 +0 NoSolution
# fix break: contig_1:4462835-4463003 0 -0 +0 NoSolution TandemRepeat 115
# fix break: contig_1:4464341-4464345 0 -0 +0 NoSolution
# fix break: contig_1:4464634 0 -0 +0 NoSolution
fix break: contig_1:4465224-4465260 4464985 -514 +504 BreakFix
fix break: contig_1:4465464-4465724 4465233 -727 +722 BreakFix
fix break: contig_1:4470530-4471056 4470360 -908 +598 BreakFix
fix break: contig_1:4472019 4471855 -165 +164 BreakFix
fix break: contig_1:4472772 4472771 -221 +216 BreakFix
fix break: contig_1:4473327 4473248 -305 +300 BreakFix
fix break: contig_1:4473552-4473701 4473331 -492 +484 BreakFix
# fix break: contig_1:4474104-4474114 0 -0 +0 NoSolution
fix break: contig_1:4475069-4475228 4475029 -253 +251 BreakFix
# fix break: contig_1:4476756 0 -0 +0 NoSolution
fix break: contig_1:4477223-4477298 4477056 -230 +252 BreakFix
# fix break: contig_1:4477886-4479738 0 -0 +0 NoSolution
fix break: contig_1:4480217-4480226 4480012 -431 +426 BreakFix
fix break: contig_1:4481219 4481043 -177 +172 BreakFix
# fix break: contig_1:4482642 0 -0 +0 NoSolution
fix break: contig_1:4483145-4483146 4483128 -64 +59 BreakFix
fix break: contig_1:4485146-4485407 4484962 -677 +565 BreakFix
# fix break: contig_1:4486084 0 -0 +0 NoSolution
fix break: contig_1:4488096-4488224 4487885 -518 +516 BreakFix
# fix break: contig_1:4489528-4489843 0 -0 +0 NoSolution
fix break: contig_1:4491392-4491412 4491253 -163 +161 BreakFix
fix break: contig_1:4491887 4491815 -298 +297 BreakFix
# fix break: contig_1:4492112 0 -0 +0 NoSolution
fix break: contig_1:4494639-4494640 4494417 -235 +236 BreakFix
# fix break: contig_1:4496038 0 -0 +0 NoSolution
fix break: contig_1:4497585-4497709 4497526 -184 +180 BreakFix
# fix break: contig_1:4498033 0 -0 +0 NoSolution
# fix break: contig_1:4498289 0 -0 +0 NoSolution
# fix break: contig_1:4498914 0 -0 +0 NoSolution
# fix break: contig_1:4499996-4500002 0 -0 +0 NoSolution
fix break: contig_1:4500780-4500809 4500784 -230 +224 BreakFix
fix break: contig_1:4501530 4501529 -151 +149 BreakFix
# fix break: contig_1:4502984 0 -0 +0 NoSolution
# fix break: contig_1:4503247-4503262 0 -0 +0 NoSolution
# fix break: contig_1:4503863-4503864 0 -0 +0 NoSolution
fix break: contig_1:4507259-4507265 4507122 -329 +326 BreakFix
# fix break: contig_1:4508913-4508940 0 -0 +0 NoSolution
fix break: contig_1:4511012-4511132 4510853 -280 +281 BreakFix
fix break: contig_1:4511819 4511606 -377 +369 BreakFix
# fix break: contig_1:4512525 0 -0 +0 NoSolution
# fix break: contig_1:4513305 0 -0 +0 NoSolution
# fix break: contig_1:4513512-4515118 0 -0 +0 NoSolution
# fix break: contig_1:4515478-4515582 0 -0 +0 NoSolution
# fix break: contig_1:4517254-4518902 0 -0 +0 NoSolution
fix break: contig_1:4521997-4522000 4521759 -482 +481 BreakFix
fix break: contig_1:4523931-4524039 4523863 -263 +263 BreakFix
fix break: contig_1:4525561 4525394 -230 +227 BreakFix
fix break: contig_1:4526097-4526232 4525946 -526 +525 BreakFix
# fix break: contig_1:4526745-4526747 0 -0 +0 NoSolution
fix break: contig_1:4528941-4528945 4529044 -95 +93 BreakFix
fix break: contig_1:4530612-4530616 4530522 -196 +193 BreakFix
fix break: contig_1:4532921-4532991 4532702 -352 +381 BreakFix
# fix break: contig_1:4534730-4534738 0 -0 +0 NoSolution
fix break: contig_1:4536206 4536138 -69 +65 BreakFix
fix break: contig_1:4536923 4536849 -313 +310 BreakFix
fix break: contig_1:4537907 4537719 -349 +344 BreakFix
fix break: contig_1:4540362-4540463 4540169 -420 +413 BreakFix
# fix break: contig_1:4542445 0 -0 +0 NoSolution
fix break: contig_1:4545529-4545532 4545505 -22 +24 BreakFix
fix break: contig_1:4545836-4545926 4545898 -82 +78 BreakFix
fix break: contig_1:4546523-4546524 4546506 -248 +245 BreakFix
# fix break: contig_1:4548429-4548794 0 -0 +0 NoSolution
fix break: contig_1:4549134-4549135 4548984 -242 +239 BreakFix
fix break: contig_1:4554348 4554127 -456 +453 BreakFix
# fix break: contig_1:4556119-4556121 0 -0 +0 NoSolution
fix break: contig_1:4556360-4558198 4556119 -2175 +791 BreakFix
# fix break: contig_1:4558912-4559033 0 -0 +0 NoSolution
# fix break: contig_1:4561194 0 -0 +0 NoSolution
# fix break: contig_1:4561481-4561482 0 -0 +0 NoSolution
fix break: contig_1:4561962 4561745 -298 +296 BreakFix
# fix break: contig_1:4562651-4562662 0 -0 +0 NoSolution
# fix break: contig_1:4563481-4563608 0 -0 +0 NoSolution
fix break: contig_1:4563928 4563700 -433 +430 BreakFix
# fix break: contig_1:4564268 0 -0 +0 NoSolution
fix break: contig_1:4564851-4565124 4564608 -759 +677 BreakFix
fix break: contig_1:4566075-4566092 4565942 -340 +333 BreakFix
# fix break: contig_1:4566840-4566844 0 -0 +0 NoSolution
fix break: contig_1:4567523 4567343 -302 +303 BreakFix
fix break: contig_1:4567767-4567776 4567528 -372 +371 BreakFix
# fix break: contig_1:4568170-4568171 0 -0 +0 NoSolution
# fix break: contig_1:4568950 0 -0 +0 NoSolution
fix break: contig_1:4569895-4569913 4569653 -350 +347 BreakFix
fix break: contig_1:4570447-4570598 4570269 -477 +474 BreakFix
# fix break: contig_1:4571093-4571095 0 -0 +0 NoSolution
# fix break: contig_1:4572398-4572404 0 -0 +0 NoSolution
# fix break: contig_1:4572670-4572681 0 -0 +0 NoSolution
# fix break: contig_1:4573300-4573344 0 -0 +0 NoSolution
# fix break: contig_1:4573719-4574377 0 -0 +0 NoSolution
fix break: contig_1:4574692 4574488 -328 +325 BreakFix
# fix break: contig_1:4575691 0 -0 +0 NoSolution
# fix break: contig_1:4577148 0 -0 +0 NoSolution
# fix break: contig_1:4578036-4578041 0 -0 +0 NoSolution
# fix break: contig_1:4579168 0 -0 +0 NoSolution
fix break: contig_1:4579955-4579957 4579752 -370 +363 BreakFix
fix break: contig_1:4580320-4580334 4580116 -420 +413 BreakFix
# fix break: contig_1:4581041-4581044 0 -0 +0 NoSolution
# fix break: contig_1:4581574-4581742 0 -0 +0 NoSolution
# fix break: contig_1:4581991-4584148 0 -0 +0 NoSolution
# fix break: contig_1:4585411-4585414 0 -0 +0 NoSolution
fix break: contig_1:4586167-4586321 4585969 -586 +583 BreakFix
# fix break: contig_1:4589534-4589537 0 -0 +0 NoSolution
fix break: contig_1:4591280 4591050 -453 +452 BreakFix
fix break: contig_1:4593159 4592967 -289 +286 BreakFix
# fix break: contig_1:4594042-4594353 0 -0 +0 NoSolution
# fix break: contig_1:4594679-4594779 0 -0 +0 NoSolution
# fix break: contig_1:4595133-4595142 0 -0 +0 NoSolution
# fix break: contig_1:4596190-4596565 0 -0 +0 NoSolution
# fix break: contig_1:4596942-4596990 0 -0 +0 NoSolution
# fix break: contig_1:4597444-4597640 0 -0 +0 NoSolution
# fix break: contig_1:4598168-4598566 0 -0 +0 NoSolution
# fix break: contig_1:4599141-4599154 0 -0 +0 NoSolution
# fix break: contig_1:4599376-4599520 0 -0 +0 NoSolution
# fix break: contig_1:4599793-4599800 0 -0 +0 NoSolution
# fix break: contig_1:4600023-4600432 0 -0 +0 NoSolution
# fix break: contig_1:4601064-4601247 0 -0 +0 NoSolution
# fix break: contig_1:4601505-4601523 0 -0 +0 NoSolution
# fix break: contig_1:4601911-4601918 0 -0 +0 NoSolution
# fix break: contig_1:4602162-4602780 0 -0 +0 NoSolution
# fix break: contig_1:4603283-4605521 0 -0 +0 NoSolution
contig_1:1-4655002 log:
Finished processing contig_1:1-4655002
Processing contig_2:1-642
frags input_2/scaffolds.fasta-DRR015801_1.fastq.gz.bam: coverage 25
Total Reads: 804, Coverage: 25, minDepth: 5
Confirmed 248 of 642 bases (38.63%)
Corrected 33 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 2 small deletions totaling 2 bases
contig_2:1-642 log:
Finished processing contig_2:1-642
Processing contig_3:1-676
frags input_2/scaffolds.fasta-DRR015801_1.fastq.gz.bam: coverage 1
Total Reads: 84, Coverage: 1, minDepth: 5
Confirmed 33 of 676 bases (4.88%)
Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases
contig_3:1-676 log:
Finished processing contig_3:1-676
Processing contig_4:1-20670
frags input_2/scaffolds.fasta-DRR015801_1.fastq.gz.bam: coverage 313
Total Reads: 117281, Coverage: 313, minDepth: 31
Confirmed 4792 of 20670 bases (23.18%)
Corrected 281 snps; 1 ambiguous bases; corrected 3 small insertions totaling 5 bases, 16 small deletions totaling 20 bases
# Attempting to fix local continuity breaks
fix break: contig_4:13895-15216 13895 -1322 +1291 BreakFix
fix break: contig_4:15683-16815 15546 -860 +854 BreakFix
contig_4:1-20670 log:
Finished processing contig_4:1-20670
Processing contig_5:1-26784
frags input_2/scaffolds.fasta-DRR015801_1.fastq.gz.bam: coverage 40
Total Reads: 29982, Coverage: 40, minDepth: 5
Confirmed 6602 of 26784 bases (24.65%)
Corrected 237 snps; 0 ambiguous bases; corrected 6 small insertions totaling 7 bases, 38 small deletions totaling 54 bases
# Attempting to fix local continuity breaks
fix break: contig_5:6304-6476 6127 -384 +376 BreakFix
fix break: contig_5:6693-6905 6467 -305 +302 BreakFix
# fix break: contig_5:7143-13292 0 -0 +0 NoSolution
# fix break: contig_5:13546-19050 0 -0 +0 NoSolution
# fix break: contig_5:19333-22533 0 -0 +0 NoSolution
contig_5:1-26784 log:
Finished processing contig_5:1-26784
Writing updated contig_1_pilon to pilon.fasta
Writing updated contig_2_pilon to pilon.fasta
Writing updated contig_3_pilon to pilon.fasta
Writing updated contig_4_pilon to pilon.fasta
Writing updated contig_5_pilon to pilon.fasta
Mean frags coverage: 153
Mean total coverage: 153
+ post_processing
+ '[' 1 = 1 ']'
+ '[' 'docker run -v $PWD:$PWD -w $PWD -u root -i --rm ' = 'docker run -v $PWD:$PWD -w $PWD -u root -i --rm ' ']'
+ docker run -v /data/user2/work/91:/data/user2/work/91 -w /data/user2/work/91 -u root -i --rm centos:centos6 chmod -R a=rXw .
+ echo 0
+ exit