nanopore~flye

Fast and accurate de novo assembler for single molecule sequencing reads

input_1:FASTQ

input_1/output.sickle.fastq

@09e78c4b-eb54-4220-abac-b116a84b1082 runid=4de97058536f00a50a5594d603041572795f8954 read=1128 ch=460 start_time=2017-11-05T11:38:59Z
CTTCGGTTACTCCAGGTTGGGTGTTTTAACCGTTTTCGCATTTATCGTGAAACGCTTTCGCGTTTTCGTGCGCCGCTTCAGGCATGAAATCGAGGTATTTCTCCGTCGACCAAAGCTGCTCTTCCGGCCGCTGTCAGTTTGCGGGTTCGCTTAAGCCAGACCTTTATCGACCTTGCCGTAGGTGGTTTCCTTTCCGGGGATTCCCGCACTGCACGCGGATGGCTTTGAATCAAAGCTCTTGATGACGAACTGTCATCAGGCTTCATCATGTACTGTGACCGGTGGTATGGCAATGCTTAAATGCGCCTTCACGAGACGCGCCGCCGGTAACTGGTAAAGCGGCATGTTGGCGGCTGGCTTTAATATCACAGCGCCATATCAACCCGCTGAAATGGCCGACATCGTAACCGGACCGCGACGCCAGTAAGCACCTTTATAGAAAACGCCAGATATCTTCGATACGGTGCGCATCGCGATGTATGACATAAGCTACGGACAAAGGTGATCCTGCAGGCGCCAGAGGCCACGGAAGCTCACGCATTGAGGGTGGCATCCCCAGACCCGTAATACCGTCCTCGTTGATTTTTTAATGTGACGAAATTACGCCCAGTTCAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTATTTTACCATACAAGTATAAGATCGAAAACTTGGTGATCACAAAAAGGCGTATATATTTGCGCTGTGAATGGTTGACAAAGATGAAATAGAATACCTTTTGTCAGCTGACGCACCCTCTTATCTTATTGGATTTATGTTCCACGTGCGCCCCCAGCCCGCAACAATGATCAACATACCGCAAAGCGCAATCAACGCACCACGTCCAGTCATGAAGGTCAGTTTCACGCCATCCACAACGCGCAACCACATCAACGCCGATGCAGACATAAACGCCACCATAAGCCGCGTAAACACGCCCACTCGCCCGCTGGTTGCAACGTTAACCAGACAAACGGCATGGTAAGTCCGCCAGGAGAAACAGCAAACAGATACTGGCGTTTTCGTTTTAACTCCTGCTGCGGGGCAGAAAGCATCCAATAATTTCACACAGCGCAGTAGCAAAAATAGTAACGTTGTTTAAATCATCTTTGTGTCTCTTATTGACATCATGGCGGTTCGGCGGACGCTGATATTCGTTGCGGGCAATAACTGAATTTTGCGTCGCAGTGGATGGCATGAATCCTGCTATTATTCATACAGAATGAATTATGAAAAATTCTCAACCAAAACGAAGATCCGGCCTGCTCGCTATTCTGCTGCCTTGCGCACTGGCATTGAGCACAACTGTTCATGCCAGAACTAATAAACTGGTGATTAGGTCTGGCGACGGTGCACAAAACCGCCAGCACGCCGCTATGGAAAAGAACAATGGAACGAGCAATCTGCGCCAGAAGTGAATAAACGCACTGAGAGTGGAAGGATAAAGCCGACGCCGCTTTTGATAACCGCGATAAATGTGGTATGAAAGCGCCAACATCCGAAATACCTACTGGGAGCCCAATACTTTTGCATACTGGACCGTCGAACTAGCGCGTTATTACTAACCTGTTATTGATTTGGGAATGTAAGGACGCGTTATGCCAAAGCGCCCACAGTGTTACGCCAGCGATGAAGATTTACGCTATGTACATCAACTCGACAATAACGCCAGTATTGATGCGTTACTGGTTTGAAGGAACCCTACGAAGCCTTTGTTGAACTCTCTCTGATCTGTGTATGATAAAGCATATTCACGATCAGAGCGAACGGCGCTTTATTGAGGGTGGAATGTGACGGCGAAAAAGCCGGTCTGGTGGAGCTGGTGGAAGTATGTTCATCTCGCCGCGCAGAATTTCAAAGATAATTATCTCCCGAATTATCAGGAAAAGGTCACAGCAGCCGATTACTGCAAATTAACAATGGACTATGGCTTTTACCGTTCTCAATCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACGATTTACCAACTTGTGGCTTTTCGGTTGAAGGTGAATTGATGGTTAACTTTATTAATGTTCAATATCGTAATGCCGTTGTATTGTATATTCCAGCATCAGTATCTGGCAGAACACAAAAACCACCGGGTCAACGAACTCTCTTCGCGACCGATAGCAATAGCATTAATATTAATAATCGATCGTATTTTTGATGGTGTAAACCCGTTCGACGGCAGGTTTTACTCCTTCATCAACAATGATTAGCTGACAGTCCACCGGATTAGCGTGACTGTATTCAACTCTGTTTTACGGTATTGAACCGTTGATTATTCGATACGGTAACCGCCAATCTAATTTTTGATCGGATCCGTTATTGATGGCATTAGCGCTGACAGATAATGTTTTGTCGTTACTTTTCGTGGTTTTACCCAGCGGATAACCCTGATCATCATAGCGATATTCCATCTGCATTTTGTTTTGCTGCTGGCTTTGTCACGAAGCCATTATCATCCGGTTTCCCCAACTCTATTTTGAAGCGGGAAGGTGAATTCTGCTAGCTGGCATTTTCCCTGTAAACGTACTCTCTTCTCCAACGTCTCGGCTTTGGTAATAGTGGCGTCCAGTACCAGAACGACCACGGTATTATTTTCCAGATCCAGTAATTCCGAGTGAATCAAAACAACCTTCTTCGGTAAAGTTCAGTACAGTTTCGTCCGTTTCACCTTTAACTCTGGCCGATGACGTCACCCAAGGTGAGGTATCTTTTGGACCACGCAACGGATAAATCGTTCATTATTTGTACATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCG

Option

-c "8" -m "32" -f "--genome-size 10M"

Output

output/scaffolds.fasta

>contig_10
CACGCTGGTCAGCCGGACGCGGGCGCTGCAGCCGTACTCGGGGATGACCGGTTACAACGG
CATTATCGCCCGTCTGCAACAGGCTGCCAGCGATCCGATGGTGGACGGCATTCTGCTCGA
TATGGACACGCCCGGCGGGATGGTGGCGGGGGCATTTGACTGCGCTGACATCATCGCCCG
TGTGCGTGACATAAAACCGGTATGGGCGCTTGCCAACGACATGAACTGCAGTGCAGGTCA
GTTGCTTTGCCAGTGCCGCCTCCCCGGCGTCTGGTCACGCAGACCGCCCGGACAGGCTCC
ATCGGCGTCAGCGATGGCTCACAGTAATTACGGTGCTGCGCTGGAGAAACAGGGTGTGGA
AATCACGCTGATTTACAGCGGCAGCCATAAGGTGGATGGCAACCCCTACAGCCATCTTCC
GGATGACGTCCGGGAGACACTGCAGTCCCGGATGGACGCAACCCGCCAGATGTTTGCGCA
GAAGGTGTCGGCATATACCGGCCTGTCCGTGCAGGTTGTGCTGGATACCGAGGCTGCAGT

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