metagenome~silva_SSU+LSU

rRNA metagenome analysis pipeline using SILVA database for 16S rRNA, 18S rRNA and 28S rRNA

input_1:FASTQ(.gz)

input_1/food1.fastq

@a3dc88cd-c4f2-4e88-acdd-d2844dfb157d runid=c80b68a7604f226fe2dadda590f0684f6703378f read=14996 ch=409 start_time=2018-10-26T10:39:06Z
TTGTTGTACTTCGTTCGGTTACGTATTGCTGGTTACCTTGTTGCGACTTGAGTCCTAATCACCAGTCCCACCTTCGACGGCTCCCCCCACAACGGTTGGGCCACCGGCACCGGGTGTTACCAACTTTCGACTTGACGGGCGGTGTACAAGCCCGAGGCAGTATTCACCCGCAGCGTTGCTGATCTGCGATTACTAGCGACTCGACTTCATGAGGTCGAGTTGCAGACCCCAATCCAGACAGAGACCGGCTTTCCGGATTTAGCTCACCCTCACAGGCTCGCCACTCTCTGTACCAGCCATTTGTAGCATGCGTGACCTGGACGCCAAAGGGGCCATGATGACTTGACGTCATCAGCCTTCCTCCAGGGTTGACCCCAGCGGTCTCCACTGAGTCCCCACCATGGCGATGCCAGCGCAGCAGCAGTGAACAAGGGTTGCGCTCGTTGCGGGACTTAACCAATCACGGCACGAGCTGACGGTAGCCATGCACCACCCACCAGCAGACCGACCCCAAAGAGGCACGCCATCTCCTGAGCGCTCCCGATCCATGTCAAACCCAGGTAAGGTTCTGCGCATTTGCATCAGATTAATCCGCACATGCTCCGCCCGCGTGCGGGGCCGTCAATTCCTTTGAGTTTTAGCGCTTGCGGCCGTATCCCCGGGCGGTGTAAAGCGTTAGCTACGGCACGGAACCGTGGGATGGACCCCACACCTGGAAGTACCCGCCGTTTACAGCGTGGACTACCAGGGGTATCTAAGCCTGTTCGCTCCGCTTTCAGCTCCTCAGCGTCAGGAAAGGCCAGAACCGCCTTCGCCACTGGGTGTTCCTCCTGATATCTGCGCATTCCACCGCTCCGCAGATTTATTCTCACGCTTCCTCAAAGTCAGCCATTATCGAAAGCACGCTCAGGTTAAGCCCAAGATTACACTTCCGACGCGATCAACCACCTACAGGCCTTGCGCCCAATAAATCCGGACGCGCTCGCGCCCTACGTATCACCGCGGCTGCTGGCGTAGTTAGCGGTCTTCTTTACCAATACCGTCGCTCGCGTGGGGCGAAGCGGTTTAACCAGGCCGTCATCCCGCACGCGGCGTTGCTGCATCAGGCTTCCGCCCATTGTGCAGTATTCCCCACTGCCTCCGTAGGGTCTGGGCCAATATCTCAGTCAGTGGCCCGGTCACCCTCTCCAGGCCAGCTGCGATAAAACAGCAAGCCACTACCCCACCAACCAAGCTGATAAGCCCGCAGGTTATCCCCGACCGCCAGGCACCAGCCCACCATGCAGCCAGGGCTCCTATCCGGTATTAGCCCCAGTTTCCTGAAGTTATCCCAAAGTCAAGACAGGTTGCTCGTGTTACTCACCCGTTCATACTCGAGCACCCCACAAAGCAGGGCCTTTCCGTTCGGCTTGCATGTGTTTAAGCGCATATAGCGTTCGTCCTGAGCCATGATCAAACTCAAGGATTCATTCCCACGGTAACACAGCAATGCGTAACGT
+
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

input_1/food2.fastq

@08e6a9fc-6db4-4e86-8a4f-d8884aac5367 runid=efc7af75f6c8d4ed323fa5c96d45d19eba31d78e read=395 ch=182 start_time=2018-10-16T11:51:38Z
TTGTTATTACTTCGTTCAGTTACGTATTGCTCTTGTCCAGGGTTTGTGTAACCTTAGAGTTTGATCCTAGCTCAGGATGAACGCTGGCGGCATACTTAGCACACATGCAAGTCGAACGGAAGTGGTGTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAACCTGCCCGCTTGGGAGGAACAACTGGAAACGGTTGCTAATACCCGTAGGCTGAGGCAAGGAGAAATCCGCCCAAGGGAGGGGCTCGCGTCTGATTAACTGGTTGGTGAGGCAATAGCTTACCGACGATGATCAGTAGCTTTGGTCGAGGATGATCAGCCACACTGGGTTTGAGACACGGCGAACTCCTACGGGAGAGGCAGCAGTGAGAATTTTCCGCAATGAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAGCTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTACCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTCAAGTCCGCCGTCAATCGAGCTCAACCCTGGACAGGCAGTGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCCGGAAAGAACACCAGCGGCGAAAGCCTCTGCTGAGCCAAACTTACTGACACTGAGACGAAAGCTGGGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCCTAGCGTAAACGATGGATACTAAGGTGCTGCGACTCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAATTACGTTCGCAAAGAATGAAACTCAAAGGGAATTGACGGGGGCCCGCACAAGCGGTAAGGAGCATGGTTTAATTCGATGCAAAAGCGAAAGAGAACCTTACCAGAACTGACATGCCGCGAATCCTCTTGAAGAGGGGTGCCCTCGGGAACGCGGACACAGGTGGTCACATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACTATGGGTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAAGGATGAGGCCAAGTCATCATGCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCAGGGACAAAGGGTCGCGATCTCGCGCGAGGTGAGCTAACTCCAAAACCCGTCCTCAGTTCGGATTGCAGGCTACGCTCGCCTGCATGAAGCAGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTGGCCATGTTTGATCATTACCCGCTTAACCGTAAGGAGGGATGCCTAAAGGCTAGGCTTGCGACTGGAGTGAAGATCGCTAACAAAGGTAACCAGCAATACGTAACACGCA
+
&8.90-3-*.36415580,31-/*0')*'+)*42000')3531::.453410,,)***+/:42-///,(1677.8:21*+0/&*+/23(0./,&)+''&&%%&(,0378.236'(06.4,3-...+*01*322404.''55)201/./.1(+&&)*+0.09687173)(./0.;1-30)1-.,-/.+)-*-+29:.2.-50(18+)5&6643.(+*(,/-,**02,*76)+3*-)-0*)2885-76462,-+*'3)-%00)/3/4/211486/90&-+1,(/'%))*,1/11,*,,,/*(*+.4.4((+,*4665.,-8/6.,+&)+.)/-+..130/&(*''*(',4,/5-72++&*0,01764-,*&',)476.4++0,*(&'()*+-53),&+50/+92,,-.960./,0*0(,).1'&),69-..7.(%((/.08://12-4,*./'*2,..2---4,37676-,*2*0234/56640*('&((,-0698,65)(,.+18,00946605977137797:97+4,6-,+6(,+335+7*4486467:4./288986.1.,20,15,,)3+13&&).,,-./))%$)306395:/,-12:07:7),,,+35-/76;.(%''))))**8/9.-+11/.00+.)*(87-293,*+(%)*.1.('**&&&%.)(**/52/04.;/''/15895,2+20-,,-+*,,/456/-,(1*227*'()+667857/+*-+-&)-)'(+1,761'%(+23/.686'/+-++.-0-0*)*0)/,6.)(&+,'()231101:<:9232.)-/1455681/-/02&57--8797:;95541010/112/,'+(.*,./.32*&-2--))'&%*')+08.*(*04((-2031;:33//8)+'&*(/-779119910:,*,*.0,,+,,*'%'('')*.//3;:8:8<.----;-:7+02.0:+()$''(++,,02'2+++%''00136636-,8/3.-.4641.)'*+0.+/1;++,0;827.,30/3624,3//341*%'+305113::67/*+-.8/82/0--'%.+.--2,0.7-7/*+63-225616+)/1021006,,12...82%,)'(4:454451*208+96;66+-039:9:8:868:232''%1,6994-+.*,2,/+&*,41++))0405/6879911+01*055366*).433361-,'*,1264/7/9/.510&07*1417,+23/333223295-0.()(-)''&&)++&')3*86;3.75++2,*427852*0)2/.017866'3%'--47:-,-()-1.+)'*+-04365212.,,.2:65434.,/5*%(+-934;:202/140072&*31(+)$*.0

input_1/food3.fastq

@7292d159-d778-4af8-890a-18bccc292717 runid=c80b68a7604f226fe2dadda590f0684f6703378f read=32461 ch=446 start_time=2018-10-26T16:52:16Z
TTATTTGTACTTCGTTCAGTTACGTATTGCTGGTTACCTTGTTACGACTTCACCCCAGTCGCCCGACCTACCGTGGTCGCCACTTTGCGGTTGGCGCGGCGCCGTCAGGGTAAGACCAACTCCATGGTGTGACGGGCGGTGTGTGTACAAGGCCAGGAACGTATTCACCGTGGCAATGCTGATCCACGATTACTGGCACGATTCCGCGCTTCATGCACTCGAGTTTACTGAGTGCAATCCGAACTGAGACGGTTTTGGGATTTGGCCAGATCGGCTCCTTCGCGTCCCATTGTCACCGCCATTTGTAGCACGTGTGCTTAATGGCCATCCATGCCAGGGCCACTTCGAGGACTTAGGCGTCATCCACACCTTCCTCGCGGCTTATCACCGGCAGTCTCCCTAGAGTGCCCAACTGGATGTTGGCAATAAGGACGTGGGTTGCGCTCGTTGCGGGACTTAACCCAACATCTCGACACGAGCTGACGACAGCCATCAACACCACTATTATTGCGCGCCCGAAGGGACCTGAATCTCTCAGGTAACACGCCATGTCAAAGGATGGTAGGGTTCTGCGCGTTGCTCGAATTAAACCAGCTCCACCGCTTGTGCGGGGCCCCGATCAATTCCTTTGAGTTTGTCTTGCAGCCGTACTCCCCAGGCGAATGCTCAAAGCCGTTAGCTGCGCTACTAGGATGCAAGCATCCCAACAGCTGGCATTCATCGTTTACAGTGGACTGCCGAGTATAATCCTGTTTGCTCCCCACGCTTTTCGCCTCAGCGTCAGTGATGGTCAGTTGGCCCGCCTTCGCCACCGGTGTTCTTGCGAATATCTACGAATTTCACCTCTACACTCGCGGTTCCGCAGCCTCTACCACCTCAAGCCAAGCGGTATCGAAGGCAATCGATGGTTGAGCCACGGGCTTTCACCCCCCAACCTGCGAGGCCGCCTACGCGCCCTTTACGCCCAGTGATTCCGAGCAGCAGCTAGCCCCTTCGTATTACCGCGGCTGCTGGCTGGCGGGATTAGCCGGGGCTTATTCTTCCGGTACCGTCATTATCGTCCGGACAAAGAGAACTTTACCTAAGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCGGTAATCAATATTCCCTGCACTCCCGTAGAGGAGTCTGGGCCGTGTCTCAGTCAATGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCGTTACCCCACCAACTAGCTAATCAGACGGGCCGATCAGCTTCGGCCAGTAAGCCTTTCCCCAAAGGGCGTATCCGGTATTGTACCAAGTTTCCCCTGCATTCCGAACAAAGGGGTACGTTCCCACGTGTTACTCACCCGTCTGCCACTCCCGTCCGAAGACGAGCGTTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGCTCTGAGCCAGGATCAAACTCTAAAAGGTTACACAAACCCTGGACAAGAGCAATACGTAGCGCG
+
%,'18'')&+*.,-16:,/1;3314--1,./;.;.-21-60/8.00236;6.887+,-82)($&'*44*+05(-*5*+'+'%')+'&(0505.1+*+&-+'&)*)-+572+('&/,331/-16%,%()&%'*2598-4--%4)),025401*5+'/*2)-,//06301:316-**,*-2.-,)/+().01;32111-*,/2450-++(*3-96412'-,-+&+(8)(',((..132830))/611/--00.,1::,***#2-&%$(&%%&++)-,/09/93,,*)13,)141///91;;;042.&((*+)-0110-&'&%$')+.4.051*-/1&,)2,26'022.-).-**&'%'*20257;10)+)367;22,00:0:./10132695971452*41('/--/0-+)&./331&')'+(+'(/,(%$0/346788-1-,,./0216/--*873.1/0).,)'%+*./*1''*),-.*..0/11,1-*,,''(')*--3++((+**22,-./(20)&+(*.--.&$'((&/.-,/*+8,1/,)01497879:6;*7-9:4711+5+68/06542.5('&$%)''.+181.-'++*1,,/1,+/--/25+0/)24.&%&/5.4-6.*)-20**10)$()+5/.,*),)++/./67.,038'(431-,,14))*()514)+-9:888./+%*/3,%(00-040:2...0,.-..7012;989../2*()'+,/7866,3,*$(((-1..56124<8.2/674-++**678+0+-**10/1138'(**+33637.//;.5.7,/13/4-044.26196369)2)*+/1100688780.1.:920597775.++*-$)%,)1)'$(%'*1032278/0'&'%(%-)0-*-*66679+-*)+./320/(+'')*,.+7,*+6981-13./32814(,(+'(&%'$+(27./3//001-.6/-63-1/50*+.2344910++//0%.$$$&')660/1583997;77;784<62++:*50-..*(/2*03.008-96-:6;66;342,.&,-,.9156*2.,-5991)0/158;-))%&$&%$%%**'(*(%+,,21476*,-/-/-*++*+.22117;;;9(3333:04047)(%.&,)-)6-11067.')(%((+4'*1++-((&)+138;8880304443(-,**%((+)8789966921202*-/5:10110989888766462230/-),02:4371.961')(0,)*---..,)*()(+'+76--,-*+))(.&)%'#%#++)%(&'+,,99038--670/0018+/.31/.)'&-(,(*)645:3(%&(.176'&)7807(+72/0.634591+%))*/2

input_1/food4.fastq

@b3cfa931-db14-41f6-9aee-87e8b5dd97fa runid=49cf21fdf6055b87c8e99ff0592e6b86f002ca6f read=1005 ch=290 start_time=2018-10-26T03:53:33Z
TTGTTGCGTTCGGTTACGTATTGCTGGTTACCTTGTTGCGACTTCACCCCAATCATCTGTCACCTTCGGCGTGGCTCCTAAAAGGTTACCTCACCGACTTCGGGTCTTACAAACTCTTTCGTGGTGTGACCGGGCGGTGTGTACAAAGGCCAGAACGTATTCACCGCGGCAGCACTGATCCGCGATTACTAGCGATTCAGCTTCACGCAGTCAGTTGCAGACTGCGATCGAACTGAGAACAGATTTGTTGGGATTGGCTTAACCTCGCGGTTTCGCTGCCTTTGTTCTATCCATTGTAGCACGTGTTAGCCCAGGTCATAGGGGCGCGCGATGATTTGGCGATCCCACCTTCCCTCAGTTTGTCACCGGCAGTCACCTTAGAGTGCCCAACTGAATGCTGGCAACTAAGATCAAGGAGTTGCGCTCGTTGCGGGACCAGCAACATCTCACGACACGAGCTGACGACAACCATGCACCTGTGCTCCGCACAGAGAACGATCTATCTCTAGGATTGTCATAGGATGTCAAGACCTGGTAGGTTCTTCGCGTTGGCTGAATTAAACCACATGCTCCACCGCTTGTACGGGCCGTCAATTCCTTTGAGTTTTAAGTCTTGCGACCGTACTCCCCAGGCAGGTCGCCATGCGTTAAGCTGCGGCACTAAAGGGGCGAAACCCTAACATAGCACTCATCGTTTACGGTGTTCGGGTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCGGCGTCAGTTACCAGACCAGAGTCGCCTTCGCCACTGGTGTTCCTCCACATCTCTACGCATTTCACCCGCTACACGTGGAATTTATCCCTCCTCTTCTGCACTCCGGTTCCCCAGTTTCCAATGACCCTCCCCGGTTGGGCCGGGGCTTTCTTTATCAGACTTAAGAAACCGCCTGCGAACCCTTTACGCCCAATAATTCCGGACAGCGCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTATTGGCTTTCTGGTTAGGTACCGTCGAATTGCCGCCCTATTCGAACAGTACTTGTTCTTCCCTAACAGCAGAGCTTTGATCCGAAAACCTTCATCACTCACGCGGCGTTGCTCCGTCAGACTTTCGTCCATTGCGGAAGATTCCCTGCTGCTGCCTCCGTAGGAGTCTGGGCCGTGTCGTTGGTGTGGCCGATCCGCCCTCTCCAGGTCGGCTACGCATCGCAGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATGCCGCGGGTCCATCTGTAGTGGTAGCCGAAGCCACCTTTATGTTTGGACCATGCGGGTTTAGACGCCATCAGTATTACCCCGGTTTTCCCGGAGTTATCCCAGTCTCTTACAGACGGGTTACCCACGTGTTACTCACCCGTCCCCGCTAACGTCGGGGCAAACATCTGTCATCGACTTGCATGTATTAGGCACGCCGCCAGCGTTCGTCCTGAGCCAGGATCAAACTCTACGTAACTTGGTTTA
+
%&%&$$%*363(247/123.7///::96;11+.+)/5'+,'/284.453+/015(2387..*,(*,--)('%(--.41.390&*))0*-030,-0,,-.(5+6/.''&&(-+-,+*,/.....(,'$'(,(1686.756774359;+5;68&++)+1525;759;8:680+)+*.10/31-,/.+1/,.,,,+,36:6.-.173//,+)+,,&+/.%0+,1886-,,+1&'*0$%&)+402.).5*&(/.8911/-1))+.+0271(&0-4:54333.*(%++23;0)'*17-.2*'())%.&.(+*+,,:0',&)$%&('.4(.)('$'&+-'00%+&,+')-)'%**(+*11*.%+.8+,71028)531165$('*)+*+,+--55*1/66076,,$&)-0(.012/12/1*4-')6<,37400/-5/0*7.-$$*$1'-*84540*+-*.(,**106504368716945+,+0/10,#%'*(%'$%%%&')++.&)*,++,--/&68050//4&'&124:798984689/+)(()12977.,-..18/('(*),,/2<874+,),,2374./1%%%')-+40-).+%)4384840/6431,52-&#%*/-3/-./%371-,,,/'%$&'.1&*((%$$#'*(*,-/1(%(**.'-*(++*6,,7812/'/2,11%'%'$%&)+,/025:99.9-&&*'%(&&%'-,(*,)(%&+/.,)-/)892:35*%)(-.:632673)-,%&$%(&)++7*.','-+5-*)*(-/67155397%0+,*5+-6:8/43(,,.03234633*),1+-79*+121,%'+,6.'$,-'%)-,&%***,285622))(.*&'/-8:<,+-2</.+0+**.58423210*3.6.'.05,&$$$*.*%'+'(-:4670:04/+)03,179<67852%1/')3/+-,.+),(&,.-:,5*2,1*)+)*./7423/2033137..+0.001/1,)(--/4963.-.0+/&&)-0/4;:,48;5;3.0-/19354''+.-,086181.*3,,+399297557756;89<,41()*+)%)++..-35-*,,6)).*/1,26<68991212*,.119554/,--9:79:1441.67-.894122./030/,01/290&%'((---09147,096-)**-.4:7592/))%&%(&+322.54,++(+&$+42-3./,*2,0+0../6846560+)#')+'(&%%%'++,.48/14/2:885797450//0013+&()$%)))).//337)'*''/20//50(*0+.31232;1,-+05*('0*,--.749*05-&%%*&&,,.0,)01*2+**&&(-017,.32(/%'/0.*34,*12-

Option

-c "30" -m "32" -b "" -d "100" -t "0.95" -g "10000"

Output

all.html

view all outputs