# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- k119_97916_2 - 125 Ribosom_S12_S23 PF00164.20 122 6.6e-57 187.2 2.2 1 1 4.2e-60 7.4e-57 187.0 2.2 1 122 2 123 2 123 0.99 # 431 # 805 # -1 # ID=258_2;partial=00;start_type=ATG;rbs_motif=TATAT;rbs_spacer=5bp;gc_cont=0.419 k119_97916_1 - 136 Ribosomal_S7 PF00177.16 148 4.8e-49 162.7 0.6 1 1 2.9e-52 5.3e-49 162.6 0.6 3 133 2 136 1 136 0.95 # 2 # 409 # -1 # ID=258_1;partial=10;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.390 k119_162203_1 - 275 Ribosomal_L2 PF00181.18 77 3.5e-34 113.6 1.9 1 1 4e-37 7.1e-34 112.6 1.9 1 77 42 118 42 118 0.99 # 17 # 841 # -1 # ID=98_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.411 k119_194783_1 - 36 Ribosomal_L14 PF00238.14 122 2.4e-12 43.7 0.0 1 1 1.4e-15 2.4e-12 43.6 0.0 88 122 1 35 1 35 0.95 # 1 # 108 # 1 # ID=188_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 k119_162203_2 - 58 Ribosomal_L23 PF00276.15 92 1.2e-07 28.6 0.3 1 1 7.4e-11 1.3e-07 28.4 0.3 40 90 1 55 1 57 0.84 # 852 # 1025 # -1 # ID=98_2;partial=00;start_type=GTG;rbs_motif=TAAAAA;rbs_spacer=5bp;gc_cont=0.356 k119_194783_3 - 184 Ribosomal_L5 PF00281.14 56 9.1e-18 60.8 0.6 1 1 1e-20 1.9e-17 59.8 0.6 1 56 27 83 27 83 0.99 # 436 # 987 # 1 # ID=188_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.335 k119_156252_3 - 147 Ribosomal_L11 PF00298.14 69 7.4e-28 93.5 1.9 1 1 6.9e-31 1.2e-27 92.8 1.9 1 69 71 139 71 139 0.99 # 1053 # 1493 # 1 # ID=223_3;partial=00;start_type=ATG;rbs_motif=TAAAAT;rbs_spacer=6bp;gc_cont=0.401 k119_14442_2 - 110 Ribosomal_S15 PF00312.17 83 2e-27 91.8 1.9 1 1 1.5e-30 2.7e-27 91.3 1.9 2 83 27 108 26 108 0.98 # 2368 # 2697 # -1 # ID=118_2;partial=00;start_type=TTG;rbs_motif=AAAAT;rbs_spacer=8bp;gc_cont=0.306 k119_29417_13 - 272 Ribosomal_S2 PF00318.15 211 5.8e-78 257.9 0.7 1 1 4e-81 7.1e-78 257.6 0.7 1 210 9 224 9 225 0.99 # 9723 # 10538 # 1 # ID=264_13;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.381 k119_194783_8 - 175 Ribosomal_S5 PF00333.15 67 3.1e-26 87.9 4.5 1 1 3e-29 5.4e-26 87.1 4.5 1 66 17 82 17 83 0.98 # 2652 # 3176 # 1 # ID=188_8;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=5bp;gc_cont=0.387 k119_29417_12 - 129 Ribosomal_S9 PF00380.14 121 2.3e-49 163.7 0.5 1 1 2.9e-52 2.5e-49 163.5 0.5 1 121 8 128 8 128 1.00 # 9199 # 9585 # 1 # ID=264_12;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=12bp;gc_cont=0.377 k119_111249_1 - 235 Ribosomal_S9 PF00380.14 121 0.0095 13.2 0.0 1 2 0.0058 5.1 4.3 0.0 16 64 10 68 4 76 0.78 # 3 # 707 # 1 # ID=67_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 k119_111249_1 - 235 Ribosomal_S9 PF00380.14 121 0.0095 13.2 0.0 2 2 0.0011 0.98 6.7 0.0 8 81 143 216 140 231 0.74 # 3 # 707 # 1 # ID=67_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 k119_194783_5 - 133 Ribosomal_S8 PF00410.14 129 1.7e-47 157.5 0.1 1 1 1.1e-50 1.9e-47 157.3 0.1 1 129 4 132 4 132 0.96 # 1320 # 1718 # 1 # ID=188_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 k119_194783_7 - 119 Ribosomal_S11 PF00411.14 110 0.0036 14.5 0.3 1 1 2.5e-06 0.0044 14.2 0.3 16 66 43 93 29 117 0.88 # 2289 # 2645 # 1 # ID=188_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.378 k119_156252_5 - 174 Ribosomal_L10 PF00466.15 100 4.6e-20 68.4 0.6 1 1 4.5e-23 8.1e-20 67.6 0.6 1 100 1 100 1 100 0.96 # 2213 # 2734 # 1 # ID=223_5;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.349 k119_156252_7 - 1271 RNA_pol_Rpb2_6 PF00562.23 386 8.5e-153 505.6 0.0 1 1 2.7e-154 4.8e-151 499.8 0.0 1 386 624 1193 624 1193 0.98 # 3300 # 7112 # 1 # ID=223_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.367 k119_29417_11 - 152 Ribosomal_L13 PF00572.13 128 6.5e-53 175.2 0.0 1 1 4.3e-56 7.6e-53 174.9 0.0 1 127 20 146 20 147 0.99 # 8744 # 9199 # 1 # ID=264_11;partial=00;start_type=GTG;rbs_motif=AAAAA;rbs_spacer=9bp;gc_cont=0.366 k119_162203_3 - 173 Ribosomal_L4 PF00573.17 192 8.4e-53 175.6 1.0 1 1 1e-55 9.2e-53 175.4 1.0 23 190 2 167 1 169 0.99 # 1150 # 1668 # -1 # ID=98_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 k119_89587_1 - 98 Ribosomal_L4 PF00573.17 192 0.0035 13.7 0.0 1 1 4.2e-06 0.0038 13.6 0.0 97 150 14 67 10 93 0.77 # 1 # 294 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.415 k119_156252_8 - 1023 RNA_pol_Rpb1_2 PF00623.15 166 4.7e-51 170.0 0.0 1 1 1.2e-52 2.2e-49 164.6 0.0 1 165 361 502 361 503 0.94 # 7145 # 10213 # 1 # ID=223_8;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=9bp;gc_cont=0.368 k119_194783_3 - 184 Ribosomal_L5_C PF00673.16 95 5.6e-41 135.2 0.2 1 1 8.1e-44 1.5e-40 133.9 0.1 1 95 87 181 87 181 0.99 # 436 # 987 # 1 # ID=188_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.335 k119_156252_4 - 231 Ribosomal_L1 PF00687.16 220 4.1e-47 157.3 1.0 1 1 2.7e-50 4.8e-47 157.1 1.0 13 220 17 221 2 221 0.90 # 1509 # 2201 # 1 # ID=223_4;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=8bp;gc_cont=0.380 k119_182068_16 - 585 Ribosomal_L29 PF00831.18 58 0.0075 12.9 1.4 1 2 3.4e-05 0.061 10.0 0.2 2 21 12 31 11 40 0.91 # 23548 # 25302 # 1 # ID=102_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 k119_182068_16 - 585 Ribosomal_L29 PF00831.18 58 0.0075 12.9 1.4 2 2 0.018 32 1.3 0.1 2 20 565 583 564 584 0.89 # 23548 # 25302 # 1 # ID=102_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 k119_194783_7 - 119 Ribosomal_L18p PF00861.17 119 4.2e-35 117.5 2.3 1 1 2.6e-38 4.6e-35 117.4 2.3 2 119 5 118 4 118 0.96 # 2289 # 2645 # 1 # ID=188_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.378 k119_237963_2 - 111 RNA_pol_Rpb6 PF01192.17 57 6.5e-11 38.8 1.1 1 1 5.4e-14 9.7e-11 38.3 1.1 3 57 20 75 18 75 0.95 # 480 # 812 # 1 # ID=288_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=8bp;gc_cont=0.330 k119_24467_6 - 161 TruB_N PF01509.13 149 4e-35 118.1 0.0 1 1 5.5e-38 4.9e-35 117.8 0.0 35 149 2 116 1 116 0.97 # 3481 # 3963 # -1 # ID=132_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 k119_119296_33 - 96 TruB_N PF01509.13 149 2.2e-19 67.0 0.3 1 1 3.1e-22 2.8e-19 66.7 0.3 3 58 39 96 37 96 0.92 # 30041 # 30328 # 1 # ID=10_33;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=8bp;gc_cont=0.420 k119_194783_8 - 175 Ribosomal_S5_C PF03719.10 74 6.4e-32 105.7 1.6 1 1 4.7e-35 8.4e-32 105.3 0.6 2 74 93 165 93 165 0.98 # 2652 # 3176 # 1 # ID=188_8;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=5bp;gc_cont=0.387 k119_156252_3 - 147 Ribosomal_L11_N PF03946.9 60 5.7e-30 99.6 0.6 1 1 3.2e-33 5.7e-30 99.6 0.6 1 60 8 66 8 66 0.99 # 1053 # 1493 # 1 # ID=223_3;partial=00;start_type=ATG;rbs_motif=TAAAAT;rbs_spacer=6bp;gc_cont=0.401 k119_162203_1 - 275 Ribosomal_L2_C PF03947.13 130 5.8e-49 162.2 0.1 1 1 5.6e-52 9.9e-49 161.4 0.1 2 128 125 249 124 251 0.96 # 17 # 841 # -1 # ID=98_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.411 k119_156252_7 - 1271 RNA_pol_Rpb2_7 PF04560.15 82 2.4e-29 98.4 0.0 1 1 2.9e-32 5.2e-29 97.3 0.0 1 80 1195 1269 1195 1270 0.98 # 3300 # 7112 # 1 # ID=223_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.367 k119_156252_7 - 1271 RNA_pol_Rpb2_2 PF04561.9 190 4.1e-32 108.1 3.6 1 2 5.3e-11 9.5e-08 28.6 0.0 1 71 148 217 148 240 0.93 # 3300 # 7112 # 1 # ID=223_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.367 k119_156252_7 - 1271 RNA_pol_Rpb2_2 PF04561.9 190 4.1e-32 108.1 3.6 2 2 3.8e-26 6.8e-23 78.0 2.7 75 190 295 414 279 414 0.92 # 3300 # 7112 # 1 # ID=223_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.367 k119_156252_7 - 1271 RNA_pol_Rpb2_1 PF04563.10 203 2.2e-18 62.9 0.1 1 1 2.5e-21 4.5e-18 61.9 0.1 1 203 22 469 22 469 0.97 # 3300 # 7112 # 1 # ID=223_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.367 k119_156252_7 - 1271 RNA_pol_Rpb2_3 PF04565.11 68 3.2e-30 100.7 0.0 1 1 5.2e-33 9.2e-30 99.2 0.0 1 68 473 542 473 542 0.99 # 3300 # 7112 # 1 # ID=223_7;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.367 k119_156252_8 - 1023 RNA_pol_Rpb1_1 PF04997.7 337 7.8e-90 298.5 0.2 1 1 6.9e-93 1.2e-89 297.8 0.2 2 337 11 359 10 359 0.85 # 7145 # 10213 # 1 # ID=223_8;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=9bp;gc_cont=0.368 k119_156252_8 - 1023 RNA_pol_Rpb1_4 PF05000.12 108 4.5e-18 62.0 1.0 1 1 7.5e-21 1.3e-17 60.4 1.0 1 107 689 774 689 775 0.87 # 7145 # 10213 # 1 # ID=223_8;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=9bp;gc_cont=0.368 k119_278143_5 - 930 IF-2 PF11987.3 109 2.3e-40 133.9 1.8 1 1 5.9e-43 1.1e-39 131.7 1.8 2 108 712 818 711 819 0.97 # 6385 # 9174 # -1 # ID=17_5;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=8bp;gc_cont=0.387 k119_50659_4 - 838 TIGR00344 TIGR00344 847 6.2e-268 888.1 4.2 1 1 1.2e-270 6.9e-268 887.9 4.2 1 831 5 836 5 838 0.96 # 1975 # 4488 # 1 # ID=34_4;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=9bp;gc_cont=0.375 k119_203328_14 - 75 TIGR00344 TIGR00344 847 0.00013 17.0 0.0 1 1 2.4e-07 0.00014 16.8 0.0 794 847 2 56 1 56 0.91 # 14742 # 14966 # -1 # ID=154_14;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 k119_222265_4 - 320 TIGR00344 TIGR00344 847 0.0028 12.6 7.7 1 1 6.3e-06 0.0037 12.2 7.7 694 810 21 140 11 196 0.64 # 6609 # 7568 # 1 # ID=123_4;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=9bp;gc_cont=0.368 k119_288095_37 - 888 TIGR00422 TIGR00422 863 5.1e-273 904.7 6.8 1 1 2e-275 5.9e-273 904.5 6.8 2 861 15 868 14 870 0.94 # 31652 # 34315 # 1 # ID=25_37;partial=00;start_type=TTG;rbs_motif=TAAAAT;rbs_spacer=10bp;gc_cont=0.365 k119_233033_3 - 1136 TIGR00422 TIGR00422 863 7.3e-107 355.0 11.3 1 3 1.9e-30 5.8e-28 94.0 0.1 6 233 12 254 8 267 0.88 # 1012 # 4419 # 1 # ID=145_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.372 k119_233033_3 - 1136 TIGR00422 TIGR00422 863 7.3e-107 355.0 11.3 2 3 3.9e-80 1.2e-77 258.4 2.5 253 844 341 1007 324 1026 0.84 # 1012 # 4419 # 1 # ID=145_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.372 k119_233033_3 - 1136 TIGR00422 TIGR00422 863 7.3e-107 355.0 11.3 3 3 0.00034 0.1 7.1 0.2 729 805 1055 1130 1040 1135 0.79 # 1012 # 4419 # 1 # ID=145_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.372 k119_119296_29 - 939 TIGR00422 TIGR00422 863 2.1e-60 201.3 14.0 1 6 5.4e-26 1.6e-23 79.3 2.5 5 161 3 144 1 147 0.90 # 25108 # 27924 # -1 # ID=10_29;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.393 k119_119296_29 - 939 TIGR00422 TIGR00422 863 2.1e-60 201.3 14.0 2 6 0.00094 0.28 5.7 0.0 164 189 205 230 195 255 0.83 # 25108 # 27924 # -1 # ID=10_29;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.393 k119_119296_29 - 939 TIGR00422 TIGR00422 863 2.1e-60 201.3 14.0 3 6 0.0012 0.35 5.4 0.0 202 236 291 323 282 334 0.81 # 25108 # 27924 # -1 # ID=10_29;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.393 k119_119296_29 - 939 TIGR00422 TIGR00422 863 2.1e-60 201.3 14.0 4 6 3e-12 8.8e-10 33.8 0.0 240 329 362 462 360 472 0.91 # 25108 # 27924 # -1 # ID=10_29;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.393 k119_119296_29 - 939 TIGR00422 TIGR00422 863 2.1e-60 201.3 14.0 5 6 2e-05 0.0061 11.2 0.0 398 427 472 501 465 513 0.85 # 25108 # 27924 # -1 # ID=10_29;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.393 k119_119296_29 - 939 TIGR00422 TIGR00422 863 2.1e-60 201.3 14.0 6 6 2.6e-20 7.7e-18 60.5 0.3 524 721 711 876 707 886 0.82 # 25108 # 27924 # -1 # ID=10_29;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=10bp;gc_cont=0.393 k119_95463_4 - 85 TIGR00422 TIGR00422 863 1.8e-11 39.4 0.6 1 1 9.4e-14 2.8e-11 38.8 0.6 33 90 3 61 1 78 0.88 # 3212 # 3466 # -1 # ID=191_4;partial=00;start_type=ATG;rbs_motif=TATAT;rbs_spacer=10bp;gc_cont=0.404 k119_95463_3 - 545 TIGR00422 TIGR00422 863 4.4e-07 24.9 8.0 1 2 0.0031 0.93 4.0 0.3 356 415 47 106 42 109 0.88 # 1415 # 3049 # -1 # ID=191_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.393 k119_95463_3 - 545 TIGR00422 TIGR00422 863 4.4e-07 24.9 8.0 2 2 2.3e-09 6.8e-07 24.3 2.3 448 762 111 429 108 492 0.72 # 1415 # 3049 # -1 # ID=191_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.393 k119_264141_9 - 323 TIGR00422 TIGR00422 863 0.001 13.7 0.0 1 1 4.2e-06 0.0012 13.5 0.0 517 536 183 202 174 298 0.94 # 6044 # 7012 # -1 # ID=211_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=8bp;gc_cont=0.375 # # Program: hmmsearch # Version: 3.3.1 (Jul 2020) # Pipeline mode: SEARCH # Query file: /tmp/b876cf7d-9c23-46ae-868d-61bcb227f76f # Target file: output_checkM/bins/bin.9/genes.faa # Option settings: hmmsearch --domtblout output_checkM/bins/bin.9/hmmer.tree.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b876cf7d-9c23-46ae-868d-61bcb227f76f output_checkM/bins/bin.9/genes.faa # Current dir: /yoshitake/test/metagenome~metaWRAP # Date: Wed Jan 19 03:50:17 2022 # [ok]