# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- k119_198058_4 - 125 Ribosom_S12_S23 PF00164.20 122 1.2e-54 179.6 1.3 1 1 9.2e-58 1.4e-54 179.5 1.3 2 122 3 123 2 123 0.99 # 1780 # 2154 # 1 # ID=224_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.392 k119_198058_5 - 156 Ribosomal_S7 PF00177.16 148 2.5e-61 202.3 0.7 1 1 1.9e-64 2.8e-61 202.2 0.7 3 148 2 148 1 148 0.98 # 2175 # 2642 # 1 # ID=224_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 k119_132517_4 - 123 Ribosomal_L14 PF00238.14 122 6.6e-53 174.4 0.3 1 1 4.9e-56 7.3e-53 174.2 0.3 1 122 1 122 1 122 0.99 # 897 # 1265 # 1 # ID=107_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.382 k119_132517_1 - 137 Ribosomal_L16 PF00252.13 133 1.9e-51 170.0 2.4 1 1 1.4e-54 2.2e-51 169.8 2.4 1 133 4 132 4 132 0.96 # 7 # 417 # 1 # ID=107_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 k119_294952_4 - 44 Ribosomal_L23 PF00276.15 92 3.2e-07 27.0 0.0 1 1 2.4e-10 3.5e-07 26.8 0.0 3 39 9 44 7 44 0.87 # 1915 # 2046 # 1 # ID=186_4;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.333 k119_132517_6 - 184 Ribosomal_L5 PF00281.14 56 2.5e-21 71.9 0.6 1 1 4.5e-24 6.8e-21 70.6 0.1 1 56 24 80 24 80 0.99 # 1600 # 2151 # 1 # ID=107_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.326 k119_294952_2 - 274 Ribosomal_L3 PF00297.17 263 1.2e-37 126.5 5.6 1 1 3.7e-39 5.5e-36 121.0 5.6 1 262 9 210 9 211 0.82 # 457 # 1278 # 1 # ID=186_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.384 k119_308282_2 - 87 Ribosomal_S15 PF00312.17 83 1.4e-30 101.6 2.2 1 1 2.1e-33 1.5e-30 101.5 2.2 3 83 5 85 3 85 0.98 # 892 # 1152 # 1 # ID=21_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 k119_236629_2 - 87 Ribosomal_S15 PF00312.17 83 2.6e-30 100.8 1.9 1 1 3.8e-33 2.9e-30 100.6 1.9 3 83 5 85 3 85 0.98 # 568 # 828 # -1 # ID=211_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 k119_298011_1 - 240 Ribosomal_S2 PF00318.15 211 1.8e-81 269.1 0.0 1 1 1.4e-84 2.1e-81 268.9 0.0 1 210 9 223 9 224 0.99 # 1 # 720 # -1 # ID=13_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 k119_258308_3 - 173 Ribosomal_S5 PF00333.15 67 3.5e-28 93.9 2.8 1 1 3.6e-31 5.5e-28 93.3 2.8 2 66 15 79 14 80 0.97 # 624 # 1142 # 1 # ID=16_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.389 k119_132517_3 - 90 Ribosomal_S17 PF00366.15 69 5.7e-29 96.7 3.1 1 1 4.6e-32 6.9e-29 96.5 3.1 1 69 13 81 13 81 0.99 # 602 # 871 # 1 # ID=107_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.326 k119_159886_29 - 132 Ribosomal_S9 PF00380.14 121 5.4e-47 155.7 1.8 1 1 4e-50 6.1e-47 155.6 1.8 1 121 11 131 11 131 1.00 # 21025 # 21420 # 1 # ID=33_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.419 k119_132517_8 - 27 Ribosomal_S8 PF00410.14 129 5.7e-06 22.9 0.1 1 1 3.9e-09 5.9e-06 22.9 0.1 1 23 5 27 5 27 0.96 # 2459 # 2539 # 1 # ID=107_8;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.346 k119_258308_9 - 129 Ribosomal_S11 PF00411.14 110 3.2e-47 156.0 0.4 1 1 2.6e-50 3.9e-47 155.7 0.4 1 110 18 127 18 127 0.99 # 3778 # 4164 # 1 # ID=16_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 k119_280141_1 - 985 RNA_pol_Rpb2_6 PF00562.23 386 2.6e-149 493.8 1.1 1 2 2.6e-05 0.039 9.4 0.0 1 32 390 421 390 429 0.88 # 1 # 2955 # 1 # ID=79_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 k119_280141_1 - 985 RNA_pol_Rpb2_6 PF00562.23 386 2.6e-149 493.8 1.1 2 2 8.6e-149 1.3e-145 481.7 1.3 1 367 443 985 443 985 0.98 # 1 # 2955 # 1 # ID=79_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 k119_159886_28 - 143 Ribosomal_L13 PF00572.13 128 3.2e-56 185.6 0.1 1 1 2.4e-59 3.7e-56 185.4 0.1 1 127 15 141 15 142 0.99 # 20585 # 21013 # 1 # ID=33_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 k119_294952_3 - 205 Ribosomal_L4 PF00573.17 192 1.2e-61 204.2 0.1 1 1 9.1e-65 1.4e-61 204.0 0.1 2 191 17 202 16 203 0.98 # 1304 # 1918 # 1 # ID=186_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.361 k119_132517_6 - 184 Ribosomal_L5_C PF00673.16 95 8.3e-43 140.8 0.4 1 1 9.3e-46 1.4e-42 140.1 0.2 2 95 85 178 84 178 0.99 # 1600 # 2151 # 1 # ID=107_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.326 k119_132517_2 - 63 Ribosomal_L29 PF00831.18 58 1.2e-20 69.7 7.1 1 1 8.8e-24 1.3e-20 69.6 7.1 1 58 3 60 3 60 0.98 # 417 # 605 # 1 # ID=107_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 k119_258308_2 - 116 Ribosomal_L18p PF00861.17 119 5.3e-31 104.0 3.2 1 1 4.2e-34 6.3e-31 103.8 3.2 4 119 6 115 4 115 0.92 # 252 # 599 # 1 # ID=16_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.374 k119_8386_4 - 304 TruB_N PF01509.13 149 1.1e-55 184.6 0.0 1 1 1e-58 1.6e-55 184.1 0.0 1 149 33 181 33 181 0.99 # 3164 # 4075 # 1 # ID=217_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.390 k119_67735_4 - 468 SRP_SPB PF02978.14 104 6.3e-34 113.1 9.2 1 4 0.067 1e+02 -0.0 0.1 39 65 201 229 189 240 0.66 # 2345 # 3748 # 1 # ID=213_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 k119_67735_4 - 468 SRP_SPB PF02978.14 104 6.3e-34 113.1 9.2 2 4 0.09 1.4e+02 -0.4 0.1 13 49 293 319 288 326 0.44 # 2345 # 3748 # 1 # ID=213_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 k119_67735_4 - 468 SRP_SPB PF02978.14 104 6.3e-34 113.1 9.2 3 4 4.2e-37 6.3e-34 113.1 9.2 1 104 327 427 327 427 0.94 # 2345 # 3748 # 1 # ID=213_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 k119_67735_4 - 468 SRP_SPB PF02978.14 104 6.3e-34 113.1 9.2 4 4 0.012 18 2.4 3.1 4 33 435 463 432 466 0.85 # 2345 # 3748 # 1 # ID=213_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 k119_258308_3 - 173 Ribosomal_S5_C PF03719.10 74 2.5e-30 100.3 1.1 1 1 2.7e-33 4e-30 99.7 1.1 2 74 90 162 89 162 0.97 # 624 # 1142 # 1 # ID=16_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.389 k119_280141_1 - 985 RNA_pol_Rpb2_2 PF04561.9 190 1.8e-14 50.3 0.2 1 1 3e-17 4.6e-14 49.0 0.2 94 190 82 182 69 182 0.94 # 1 # 2955 # 1 # ID=79_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 k119_280141_1 - 985 RNA_pol_Rpb2_1 PF04563.10 203 1.3e-06 24.2 0.0 1 1 1.4e-09 2.1e-06 23.5 0.0 149 203 153 237 22 237 0.79 # 1 # 2955 # 1 # ID=79_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 k119_280141_1 - 985 RNA_pol_Rpb2_3 PF04565.11 68 8e-31 102.4 0.0 1 1 1e-33 1.5e-30 101.5 0.0 1 68 241 310 241 310 0.98 # 1 # 2955 # 1 # ID=79_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 k119_8386_2 - 814 IF-2 PF11987.3 109 1.7e-39 130.8 5.6 1 1 1.1e-42 1.7e-39 130.8 5.6 2 109 597 704 596 704 0.98 # 358 # 2799 # 1 # ID=217_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 k119_281516_1 - 233 TIGR00344 TIGR00344 847 6.2e-112 371.8 0.2 1 1 9.3e-115 7e-112 371.6 0.2 1 221 5 233 5 233 0.98 # 3 # 701 # -1 # ID=124_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.436 k119_121137_1 - 422 TIGR00344 TIGR00344 847 2.1e-11 39.2 0.0 1 1 3.6e-14 2.7e-11 38.8 0.0 544 680 60 202 40 254 0.84 # 2 # 1267 # -1 # ID=72_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 k119_277900_4 - 906 TIGR00422 TIGR00422 863 0 1154.3 4.8 1 1 0 0 1154.1 4.8 1 862 1 895 1 896 0.97 # 1600 # 4317 # 1 # ID=5_4;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.373 k119_310218_10 - 376 TIGR00422 TIGR00422 863 2.4e-43 144.6 0.2 1 1 8.9e-46 2.7e-43 144.5 0.2 484 799 4 321 1 360 0.81 # 9013 # 10140 # -1 # ID=89_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.363 k119_148586_1 - 166 TIGR00422 TIGR00422 863 4.4e-09 31.3 0.0 1 1 1.5e-11 4.6e-09 31.2 0.0 41 91 12 62 2 121 0.85 # 3 # 500 # -1 # ID=239_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.444 k119_49603_1 - 100 TIGR00422 TIGR00422 863 1e-08 30.1 0.5 1 1 3.8e-11 1.1e-08 29.9 0.5 785 862 2 79 1 80 0.93 # 3 # 302 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 k119_123120_3 - 463 TIGR00422 TIGR00422 863 1.3e-07 26.4 2.2 1 2 0.0016 0.48 4.7 0.2 48 76 36 64 25 76 0.90 # 1036 # 2424 # 1 # ID=111_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 k119_123120_3 - 463 TIGR00422 TIGR00422 863 1.3e-07 26.4 2.2 2 2 1.4e-08 4.2e-06 21.4 0.1 521 587 261 326 238 358 0.85 # 1036 # 2424 # 1 # ID=111_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 # # Program: hmmsearch # Version: 3.3.1 (Jul 2020) # Pipeline mode: SEARCH # Query file: /tmp/251ad373-131b-4192-96c9-9d8d2ea59a01 # Target file: output_checkM/bins/bin.8/genes.faa # Option settings: hmmsearch --domtblout output_checkM/bins/bin.8/hmmer.tree.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/251ad373-131b-4192-96c9-9d8d2ea59a01 output_checkM/bins/bin.8/genes.faa # Current dir: /yoshitake/test/metagenome~metaWRAP # Date: Wed Jan 19 03:50:18 2022 # [ok]