# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- k119_60596_18 - 124 Ribosom_S12_S23 PF00164.20 122 3.4e-56 185.5 2.9 1 1 1.4e-59 3.8e-56 185.4 2.9 1 122 2 123 2 123 0.99 # 18041 # 18412 # 1 # ID=96_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 k119_60596_19 - 157 Ribosomal_S7 PF00177.16 148 1.3e-63 210.6 3.0 1 1 5.1e-67 1.4e-63 210.5 3.0 1 148 1 149 1 149 0.99 # 18425 # 18895 # 1 # ID=96_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 k119_117277_1 - 243 Ribosomal_L2 PF00181.18 77 2e-35 118.2 0.6 1 1 1.9e-38 5.3e-35 116.8 0.5 1 76 42 117 42 118 0.99 # 3 # 731 # -1 # ID=399_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.553 k119_103379_1 - 92 Ribosomal_S3_C PF00189.15 85 6.8e-23 78.3 0.0 1 1 3.2e-26 8.7e-23 78.0 0.0 32 85 1 54 1 54 0.99 # 1 # 276 # 1 # ID=274_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.551 k119_124048_5 - 123 Ribosomal_L14 PF00238.14 122 2.5e-55 183.0 3.2 1 1 1e-58 2.8e-55 182.9 3.2 1 122 1 122 1 122 0.99 # 1268 # 1636 # -1 # ID=277_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 k119_103379_2 - 138 Ribosomal_L16 PF00252.13 133 2.1e-54 180.5 1.3 1 1 8.4e-58 2.3e-54 180.3 1.3 1 133 4 133 4 133 0.99 # 288 # 701 # 1 # ID=274_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 k119_124048_9 - 99 Ribosomal_L23 PF00276.15 92 4.9e-27 91.3 1.4 1 1 1.9e-30 5.3e-27 91.2 1.4 1 89 8 95 8 98 0.94 # 3086 # 3382 # -1 # ID=277_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.478 k119_124048_3 - 187 Ribosomal_L5 PF00281.14 56 1.7e-20 70.2 0.3 1 1 1e-23 2.9e-20 69.4 0.3 1 56 31 87 31 87 0.98 # 401 # 961 # -1 # ID=277_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.481 k119_124048_11 - 244 Ribosomal_L3 PF00297.17 263 2.5e-43 145.9 7.5 1 1 5.5e-45 1.5e-41 140.1 7.5 1 263 9 205 9 205 0.94 # 3993 # 4724 # -1 # ID=277_11;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.529 k119_218586_4 - 90 Ribosomal_S15 PF00312.17 83 4.9e-27 91.1 0.6 1 1 2e-30 5.6e-27 90.9 0.6 3 83 8 88 6 88 0.97 # 2459 # 2728 # 1 # ID=38_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 k119_91952_3 - 262 Ribosomal_S2 PF00318.15 211 4e-86 285.2 0.0 1 1 1.6e-89 4.5e-86 285.0 0.0 1 210 10 224 10 225 0.99 # 1063 # 1848 # -1 # ID=190_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.538 k119_48137_8 - 191 Ribosomal_S5 PF00333.15 67 1.7e-29 98.9 3.4 1 1 2e-32 2.8e-29 98.3 3.4 1 66 19 84 19 85 0.97 # 5018 # 5590 # -1 # ID=397_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 k119_277860_10 - 130 Ribosomal_S5 PF00333.15 67 0.0024 15.2 0.2 1 2 0.0084 12 3.4 0.1 16 41 8 35 3 48 0.80 # 8761 # 9150 # -1 # ID=16_10;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 k119_277860_10 - 130 Ribosomal_S5 PF00333.15 67 0.0024 15.2 0.2 2 2 8.6e-05 0.12 9.8 0.0 39 62 99 122 96 125 0.86 # 8761 # 9150 # -1 # ID=16_10;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 k119_124048_6 - 77 Ribosomal_S17 PF00366.15 69 1.2e-24 83.7 1.4 1 1 4.9e-28 1.3e-24 83.6 1.4 1 67 8 74 8 76 0.98 # 1704 # 1934 # -1 # ID=277_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 k119_48137_11 - 131 Ribosomal_S8 PF00410.14 129 7.2e-46 152.8 0.0 1 1 5.8e-49 8e-46 152.7 0.0 1 129 3 130 3 130 0.99 # 6609 # 7001 # -1 # ID=397_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 k119_124048_1 - 23 Ribosomal_S8 PF00410.14 129 0.00049 17.5 0.0 1 1 3.6e-07 0.00049 17.5 0.0 1 21 3 23 3 23 0.94 # 3 # 71 # -1 # ID=277_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.493 k119_48137_2 - 130 Ribosomal_S11 PF00411.14 110 3.3e-48 160.0 0.1 1 1 1.4e-51 3.9e-48 159.8 0.1 1 110 19 128 19 128 0.99 # 1069 # 1458 # -1 # ID=397_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 k119_270294_1 - 791 RNA_pol_Rpb2_6 PF00562.23 386 1.8e-162 538.0 0.0 1 2 0.00018 0.51 6.6 0.0 1 30 95 124 95 133 0.89 # 1 # 2373 # 1 # ID=171_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 k119_270294_1 - 791 RNA_pol_Rpb2_6 PF00562.23 386 1.8e-162 538.0 0.0 2 2 2.6e-163 7.3e-160 529.5 0.0 2 386 149 708 148 708 0.98 # 1 # 2373 # 1 # ID=171_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 k119_100787_6 - 144 Ribosomal_L13 PF00572.13 128 4.9e-52 172.9 0.0 1 1 2e-55 5.5e-52 172.8 0.0 1 126 15 140 15 142 0.98 # 3892 # 4323 # 1 # ID=135_6;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 k119_124048_10 - 206 Ribosomal_L4 PF00573.17 192 3.8e-62 206.7 0.3 1 1 1.5e-65 4.3e-62 206.5 0.3 1 191 16 202 16 203 0.97 # 3379 # 3996 # -1 # ID=277_10;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.532 k119_270294_2 - 585 RNA_pol_Rpb1_2 PF00623.15 166 2.2e-53 178.2 0.0 1 1 1.9e-55 5.3e-52 173.7 0.0 1 166 347 489 347 489 0.96 # 2433 # 4187 # 1 # ID=171_2;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.527 k119_124048_3 - 187 Ribosomal_L5_C PF00673.16 95 6.2e-40 132.5 0.1 1 1 5.4e-43 1.5e-39 131.2 0.0 1 95 91 185 91 185 0.99 # 401 # 961 # -1 # ID=277_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.481 k119_124048_7 - 69 Ribosomal_L29 PF00831.18 58 1.3e-26 89.6 1.7 1 1 5.4e-30 1.5e-26 89.5 1.7 1 58 3 60 3 60 0.98 # 1940 # 2146 # -1 # ID=277_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 k119_48137_9 - 120 Ribosomal_L18p PF00861.17 119 3.2e-34 115.3 1.2 1 1 1.3e-37 3.6e-34 115.1 1.2 6 119 10 119 4 119 0.90 # 5695 # 6054 # -1 # ID=397_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.522 k119_208913_1 - 56 RNA_pol_Rpb6 PF01192.17 57 2.8e-16 56.6 0.0 1 1 1.1e-19 3.2e-16 56.4 0.0 1 50 7 55 7 55 0.98 # 49 # 216 # 1 # ID=50_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 k119_102783_5 - 302 TruB_N PF01509.13 149 4.7e-49 164.0 0.0 1 1 2.2e-52 6.2e-49 163.6 0.0 1 149 32 180 32 180 0.96 # 3307 # 4212 # -1 # ID=248_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 k119_159243_8 - 499 SRP_SPB PF02978.14 104 6.6e-33 110.7 9.6 1 2 2.4e-36 6.6e-33 110.7 9.6 2 104 329 428 328 428 0.96 # 7045 # 8541 # 1 # ID=47_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 k119_159243_8 - 499 SRP_SPB PF02978.14 104 6.6e-33 110.7 9.6 2 2 0.039 1.1e+02 0.8 0.1 10 45 427 462 426 469 0.73 # 7045 # 8541 # 1 # ID=47_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 k119_48137_8 - 191 Ribosomal_S5_C PF03719.10 74 1.2e-30 102.2 0.3 1 1 6.7e-34 1.8e-30 101.6 0.3 2 74 96 168 95 168 0.98 # 5018 # 5590 # -1 # ID=397_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 k119_117277_1 - 243 Ribosomal_L2_C PF03947.13 130 1.7e-52 174.3 3.7 1 1 9.6e-56 2.7e-52 173.6 3.7 1 120 124 243 124 243 0.99 # 3 # 731 # -1 # ID=399_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.553 k119_270294_1 - 791 RNA_pol_Rpb2_7 PF04560.15 82 9.9e-31 103.5 0.1 1 1 6.5e-34 1.8e-30 102.6 0.1 1 80 710 784 710 786 0.98 # 1 # 2373 # 1 # ID=171_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 k119_189386_1 - 626 RNA_pol_Rpb2_2 PF04561.9 190 1.3e-26 90.8 0.0 1 2 2.7e-09 7.4e-06 23.1 0.0 20 71 178 228 157 240 0.76 # 157 # 2034 # 1 # ID=86_1;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 k119_189386_1 - 626 RNA_pol_Rpb2_2 PF04561.9 190 1.3e-26 90.8 0.0 2 2 2.7e-22 7.3e-19 65.5 0.0 89 190 369 474 352 474 0.94 # 157 # 2034 # 1 # ID=86_1;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 k119_189386_1 - 626 RNA_pol_Rpb2_1 PF04563.10 203 5.2e-27 91.7 0.0 1 1 5.7e-30 1.6e-26 90.1 0.0 1 203 26 529 26 529 0.97 # 157 # 2034 # 1 # ID=86_1;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 k119_189386_1 - 626 RNA_pol_Rpb2_3 PF04565.11 68 4.4e-31 104.1 0.0 1 1 2.9e-34 7.9e-31 103.2 0.0 1 68 533 602 533 602 0.99 # 157 # 2034 # 1 # ID=86_1;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 k119_270294_2 - 585 RNA_pol_Rpb1_1 PF04997.7 337 1.6e-100 334.2 0.2 1 1 4.1e-103 1.1e-99 331.4 0.2 2 337 17 345 16 345 0.92 # 2433 # 4187 # 1 # ID=171_2;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.527 k119_269151_4 - 822 IF-2 PF11987.3 109 4.6e-40 133.5 0.7 1 1 5e-43 1.4e-39 132.0 0.7 2 109 603 711 602 711 0.97 # 1281 # 3746 # -1 # ID=101_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.549 k119_278678_10 - 887 TIGR00344 TIGR00344 847 2.6e-278 923.0 0.0 1 1 2.2e-281 3e-278 922.8 0.0 1 846 6 866 6 867 0.96 # 9270 # 11930 # -1 # ID=85_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 k119_297563_22 - 649 TIGR00344 TIGR00344 847 8e-05 18.3 0.0 1 1 8.5e-08 0.00012 17.7 0.0 546 670 66 195 41 211 0.81 # 19602 # 21548 # 1 # ID=4_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 k119_222737_3 - 976 TIGR00422 TIGR00422 863 1.6e-280 930.2 0.0 1 1 2.3e-282 6.9e-280 928.1 0.0 3 861 4 953 2 955 0.92 # 747 # 3674 # 1 # ID=285_3;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.549 k119_119257_3 - 522 TIGR00422 TIGR00422 863 9.3e-63 209.7 0.0 1 2 4.5e-50 1.4e-47 159.5 0.1 11 229 17 240 13 242 0.95 # 1753 # 3318 # -1 # ID=26_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 k119_119257_3 - 522 TIGR00422 TIGR00422 863 9.3e-63 209.7 0.0 2 2 2.3e-16 7e-14 48.0 0.0 261 418 330 506 325 515 0.76 # 1753 # 3318 # -1 # ID=26_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 k119_119257_2 - 431 TIGR00422 TIGR00422 863 2.3e-42 142.3 0.0 1 1 8.8e-45 2.7e-42 142.0 0.0 441 733 29 320 7 398 0.84 # 448 # 1740 # -1 # ID=26_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 k119_90522_5 - 249 TIGR00422 TIGR00422 863 3.9e-42 141.5 3.1 1 2 8.5e-41 2.6e-38 128.8 0.4 4 188 3 171 1 174 0.94 # 3345 # 4091 # 1 # ID=99_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 k119_90522_5 - 249 TIGR00422 TIGR00422 863 3.9e-42 141.5 3.1 2 2 5.5e-05 0.017 10.4 0.2 342 397 173 225 167 228 0.91 # 3345 # 4091 # 1 # ID=99_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 k119_256231_7 - 519 TIGR00422 TIGR00422 863 4.4e-34 114.9 0.3 1 3 0.00024 0.073 8.3 0.0 269 296 1 28 1 86 0.78 # 3761 # 5317 # -1 # ID=395_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 k119_256231_7 - 519 TIGR00422 TIGR00422 863 4.4e-34 114.9 0.3 2 3 1.4e-09 4.2e-07 25.6 0.0 397 461 88 174 83 250 0.69 # 3761 # 5317 # -1 # ID=395_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 k119_256231_7 - 519 TIGR00422 TIGR00422 863 4.4e-34 114.9 0.3 3 3 1.3e-24 3.9e-22 75.3 0.0 525 719 288 454 285 466 0.83 # 3761 # 5317 # -1 # ID=395_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 k119_159863_4 - 148 TIGR00422 TIGR00422 863 2.3e-24 82.7 0.0 1 1 8.3e-27 2.5e-24 82.6 0.0 11 119 29 138 24 148 0.93 # 2789 # 3232 # 1 # ID=98_4;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 k119_49723_2 - 455 TIGR00422 TIGR00422 863 4.6e-06 22.2 0.0 1 1 2.6e-08 8.1e-06 21.3 0.0 479 582 223 326 206 352 0.87 # 279 # 1643 # 1 # ID=24_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.560 k119_314437_15 - 582 TIGR00422 TIGR00422 863 1.3e-05 20.6 0.1 1 2 0.004 1.2 4.2 0.0 43 73 132 162 125 170 0.91 # 10006 # 11751 # -1 # ID=372_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 k119_314437_15 - 582 TIGR00422 TIGR00422 863 1.3e-05 20.6 0.1 2 2 4.1e-06 0.0013 14.1 0.0 525 574 395 443 359 464 0.79 # 10006 # 11751 # -1 # ID=372_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 k119_240992_4 - 367 TIGR00422 TIGR00422 863 0.00011 17.6 0.1 1 1 7e-07 0.00022 16.6 0.0 41 89 10 59 2 76 0.87 # 2803 # 3903 # 1 # ID=199_4;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.567 # # Program: hmmsearch # Version: 3.3.1 (Jul 2020) # Pipeline mode: SEARCH # Query file: /tmp/729865a5-7614-48fc-bbb3-76f1bcfc1727 # Target file: output_checkM/bins/bin.7/genes.faa # Option settings: hmmsearch --domtblout output_checkM/bins/bin.7/hmmer.tree.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/729865a5-7614-48fc-bbb3-76f1bcfc1727 output_checkM/bins/bin.7/genes.faa # Current dir: /yoshitake/test/metagenome~metaWRAP # Date: Wed Jan 19 03:50:19 2022 # [ok]