# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- k119_180090_2 - 250 Ribosomal_L2 PF00181.18 77 2.4e-08 30.2 0.0 1 1 5.4e-11 6.1e-08 28.9 0.0 1 76 16 88 16 89 0.89 # 353 # 1102 # -1 # ID=63_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.384 k119_99493_6 - 264 Ribosomal_S3_C PF00189.15 85 2.9e-15 52.6 0.5 1 1 1.1e-17 6.4e-15 51.5 0.1 2 85 99 182 98 182 0.96 # 1327 # 2118 # -1 # ID=13_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.338 k119_19313_1 - 141 Ribosomal_S3_C PF00189.15 85 1.2e-08 31.4 0.1 1 1 4.8e-11 2.7e-08 30.3 0.1 2 43 99 139 98 141 0.92 # 3 # 425 # -1 # ID=274_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.340 k119_19313_3 - 132 Ribosomal_S19 PF00203.16 81 2.9e-24 80.8 0.2 1 1 4.3e-27 4.8e-24 80.1 0.2 10 81 43 114 33 114 0.88 # 892 # 1287 # -1 # ID=274_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=15bp;gc_cont=0.323 k119_19313_2 - 156 Ribosomal_L22 PF00237.14 105 2e-30 101.2 1.9 1 1 4.4e-33 2.5e-30 100.9 1.9 3 105 24 154 22 154 0.98 # 428 # 895 # -1 # ID=274_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.335 k119_99493_7 - 96 Ribosomal_L22 PF00237.14 105 3.4e-22 74.7 0.2 1 1 6.3e-25 3.6e-22 74.7 0.2 35 105 25 94 2 94 0.90 # 2121 # 2408 # -1 # ID=13_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.347 k119_99493_2 - 141 Ribosomal_L14 PF00238.14 122 7.1e-33 109.3 0.5 1 1 7.1e-36 8.1e-33 109.1 0.5 2 122 20 140 19 140 0.95 # 119 # 541 # -1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.374 k119_167803_2 - 170 Ribosomal_L16 PF00252.13 133 4.4e-25 84.3 0.9 1 1 4.9e-28 5.5e-25 84.0 0.9 6 127 6 155 3 161 0.90 # 389 # 898 # 1 # ID=278_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 k119_19313_4 - 89 Ribosomal_L23 PF00276.15 92 2.2e-14 49.5 4.3 1 1 4.6e-17 5.2e-14 48.3 4.3 1 56 7 62 7 85 0.90 # 1332 # 1598 # -1 # ID=274_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.311 k119_19313_6 - 332 Ribosomal_L3 PF00297.17 263 5.6e-54 179.6 4.0 1 1 5.9e-57 6.7e-54 179.3 4.0 1 263 50 311 50 311 0.90 # 2407 # 3402 # -1 # ID=274_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.341 k119_53437_3 - 150 Ribosomal_S15 PF00312.17 83 1.4e-19 66.0 0.4 1 1 2.1e-22 2.4e-19 65.3 0.4 3 80 67 148 65 149 0.97 # 1617 # 2066 # -1 # ID=132_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 k119_63416_1 - 221 Ribosomal_S2 PF00318.15 211 4.9e-33 110.4 1.2 1 2 7.1e-18 8.1e-15 50.9 0.0 3 97 29 120 27 126 0.92 # 6 # 668 # -1 # ID=145_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.320 k119_63416_1 - 221 Ribosomal_S2 PF00318.15 211 4.9e-33 110.4 1.2 2 2 3.8e-20 4.2e-17 58.4 0.7 144 209 127 192 122 194 0.96 # 6 # 668 # -1 # ID=145_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.320 k119_208183_4 - 123 Ribosomal_S5 PF00333.15 67 3.6e-09 32.6 0.1 1 1 5.7e-12 6.4e-09 31.8 0.1 1 35 89 123 89 123 0.98 # 1563 # 1931 # 1 # ID=303_4;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 k119_99493_3 - 108 Ribosomal_S17 PF00366.15 69 3.5e-17 58.6 0.2 1 1 4.2e-20 4.8e-17 58.1 0.2 1 69 36 105 36 105 0.97 # 541 # 864 # -1 # ID=13_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 k119_305484_1 - 91 Ribosomal_S11 PF00411.14 110 2.3e-24 82.0 0.4 1 1 7.1e-27 2.7e-24 81.8 0.4 34 110 1 86 1 86 0.98 # 2 # 274 # 1 # ID=252_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.436 k119_208254_4 - 84 Ribosomal_S11 PF00411.14 110 1.1e-22 76.7 0.4 1 1 3.3e-25 1.2e-22 76.5 0.4 40 110 1 79 1 79 0.99 # 1558 # 1809 # -1 # ID=304_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 k119_275638_3 - 87 Ribosomal_S11 PF00411.14 110 6.6e-13 45.2 0.2 1 1 2.7e-15 1e-12 44.6 0.2 1 42 45 87 45 87 0.97 # 1406 # 1666 # 1 # ID=240_3;partial=01;start_type=TTG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.383 k119_313655_2 - 256 RNA_pol_Rpb2_6 PF00562.23 386 7.5e-73 241.8 0.9 1 1 7.9e-76 8.9e-73 241.5 0.9 231 386 3 158 1 158 0.99 # 762 # 1529 # -1 # ID=220_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 k119_19313_5 - 271 Ribosomal_L4 PF00573.17 192 3.3e-42 140.4 0.2 1 1 3.4e-45 3.8e-42 140.2 0.2 1 191 16 257 16 258 0.93 # 1595 # 2407 # -1 # ID=274_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 k119_99493_5 - 64 Ribosomal_L29 PF00831.18 58 7e-13 44.4 2.9 1 1 6.8e-16 7.7e-13 44.3 2.9 1 57 1 58 1 59 0.97 # 1124 # 1315 # -1 # ID=13_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 k119_208183_3 - 161 Ribosomal_L18p PF00861.17 119 8.2e-23 77.2 1.0 1 1 9.5e-26 1.1e-22 76.8 1.0 3 119 8 124 7 124 0.98 # 1078 # 1560 # 1 # ID=303_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 k119_209639_4 - 173 RNA_pol_Rpb6 PF01192.17 57 3.3e-12 42.3 0.1 1 1 2.9e-15 3.3e-12 42.3 0.1 5 57 101 154 98 154 0.94 # 1625 # 2143 # -1 # ID=53_4;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.299 k119_111457_1 - 76 SRP_SPB PF02978.14 104 9e-19 64.0 0.0 1 1 1.1e-21 1.2e-18 63.6 0.0 50 104 3 57 1 57 0.96 # 3 # 230 # 1 # ID=81_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 k119_48797_2 - 473 Ribosomal_L11_N PF03946.9 60 0.013 11.4 1.1 1 1 3.1e-05 0.035 9.9 0.0 18 41 11 34 11 49 0.87 # 1194 # 2612 # 1 # ID=277_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 k119_180090_2 - 250 Ribosomal_L2_C PF03947.13 130 1.5e-34 115.0 1.5 1 1 2.2e-37 2.5e-34 114.2 1.5 1 130 95 228 95 228 0.96 # 353 # 1102 # -1 # ID=63_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.384 k119_313655_2 - 256 RNA_pol_Rpb2_7 PF04560.15 82 4.9e-32 106.4 0.0 1 1 7.6e-35 8.6e-32 105.6 0.0 1 80 160 250 160 252 0.98 # 762 # 1529 # -1 # ID=220_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 k119_142192_3 - 632 RNA_pol_Rpb2_2 PF04561.9 190 4.5e-26 87.8 0.0 1 1 8.1e-29 9.2e-26 86.7 0.0 3 189 170 343 168 344 0.94 # 732 # 2627 # 1 # ID=122_3;partial=01;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 k119_142192_3 - 632 RNA_pol_Rpb2_1 PF04563.10 203 4.2e-56 185.4 0.0 1 1 4.8e-59 5.4e-56 185.0 0.0 2 203 21 401 20 401 0.99 # 732 # 2627 # 1 # ID=122_3;partial=01;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 k119_142192_3 - 632 RNA_pol_Rpb2_3 PF04565.11 68 3.2e-28 93.6 0.1 1 1 6.2e-31 7e-28 92.6 0.1 1 64 412 473 412 477 0.96 # 732 # 2627 # 1 # ID=122_3;partial=01;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.334 k119_313655_1 - 252 RNA_pol_Rpb1_1 PF04997.7 337 8.2e-57 189.2 2.1 1 1 9.1e-58 1e-54 182.3 2.1 2 273 7 252 6 252 0.86 # 3 # 758 # -1 # ID=220_1;partial=10;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.321 k119_273104_4 - 156 TIGR00344 TIGR00344 847 1.5e-20 69.0 0.1 1 1 3.2e-23 1.8e-20 68.8 0.1 8 81 81 156 76 156 0.91 # 1678 # 2145 # 1 # ID=171_4;partial=01;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 k119_123018_4 - 146 TIGR00344 TIGR00344 847 0.0018 12.5 2.3 1 1 3.6e-06 0.0021 12.3 2.3 713 789 22 97 10 131 0.83 # 1737 # 2174 # 1 # ID=129_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=15bp;gc_cont=0.283 k119_122311_2 - 429 TIGR00422 TIGR00422 863 1.6e-116 386.4 2.1 1 1 1e-118 1.9e-116 386.1 2.1 3 427 8 423 6 427 0.96 # 284 # 1570 # 1 # ID=106_2;partial=01;start_type=ATG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.320 k119_18131_2 - 768 TIGR00422 TIGR00422 863 1.4e-101 336.8 8.3 1 2 5.7e-34 1.1e-31 105.7 0.5 3 235 5 241 3 255 0.91 # 228 # 2531 # 1 # ID=247_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 k119_18131_2 - 768 TIGR00422 TIGR00422 863 1.4e-101 336.8 8.3 2 2 4.7e-73 8.9e-71 235.0 2.0 257 686 311 766 304 768 0.90 # 228 # 2531 # 1 # ID=247_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.324 k119_184299_1 - 512 TIGR00422 TIGR00422 863 1.9e-34 114.8 7.1 1 1 1.7e-36 3.3e-34 114.0 7.1 469 833 120 463 6 486 0.77 # 2 # 1537 # 1 # ID=191_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 k119_61438_4 - 289 TIGR00422 TIGR00422 863 5e-08 27.4 3.8 1 2 3.1e-09 5.8e-07 23.8 0.3 695 813 2 118 1 146 0.83 # 1200 # 2066 # -1 # ID=73_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 k119_61438_4 - 289 TIGR00422 TIGR00422 863 5e-08 27.4 3.8 2 2 0.0016 0.3 4.9 0.3 721 792 201 272 188 287 0.86 # 1200 # 2066 # -1 # ID=73_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 k119_158463_1 - 184 TIGR00422 TIGR00422 863 1.7e-05 19.0 0.2 1 1 1.5e-06 0.00029 14.9 0.2 38 175 8 128 2 141 0.73 # 2 # 553 # -1 # ID=293_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.335 k119_264554_1 - 424 TIGR00422 TIGR00422 863 0.0012 12.8 0.0 1 1 8.4e-06 0.0016 12.5 0.0 480 542 139 208 121 309 0.83 # 3 # 1274 # 1 # ID=235_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 # # Program: hmmsearch # Version: 3.3.1 (Jul 2020) # Pipeline mode: SEARCH # Query file: /tmp/14665378-d5c6-45ed-b9ab-ea3fdff1c1d2 # Target file: output_checkM/bins/bin.6/genes.faa # Option settings: hmmsearch --domtblout output_checkM/bins/bin.6/hmmer.tree.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/14665378-d5c6-45ed-b9ab-ea3fdff1c1d2 output_checkM/bins/bin.6/genes.faa # Current dir: /yoshitake/test/metagenome~metaWRAP # Date: Wed Jan 19 03:50:06 2022 # [ok]