# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- k119_300574_39 - 125 Ribosom_S12_S23 PF00164.20 122 9.2e-57 186.5 3.3 1 1 7.2e-60 1.1e-56 186.3 3.3 1 121 2 122 2 123 0.98 # 34024 # 34398 # 1 # ID=24_39;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 k119_300574_40 - 157 Ribosomal_S7 PF00177.16 148 1.1e-57 190.5 0.0 1 1 8.2e-61 1.2e-57 190.3 0.0 1 148 1 149 1 149 0.99 # 34398 # 34868 # 1 # ID=24_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.586 k119_300574_48 - 279 Ribosomal_L2 PF00181.18 77 1.2e-35 118.1 2.7 1 1 1.8e-38 2.6e-35 117.0 2.7 1 77 42 119 42 119 0.98 # 41830 # 42666 # 1 # ID=24_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.578 k119_300574_51 - 256 Ribosomal_S3_C PF00189.15 85 1.2e-30 102.3 0.2 1 1 1.9e-33 2.8e-30 101.1 0.2 2 85 124 206 123 206 0.97 # 43385 # 44152 # 1 # ID=24_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.594 k119_300574_49 - 94 Ribosomal_S19 PF00203.16 81 6.1e-38 125.1 0.7 1 1 4.7e-41 6.9e-38 124.9 0.7 1 81 3 83 3 83 0.99 # 42681 # 42962 # 1 # ID=24_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 k119_300574_50 - 133 Ribosomal_L22 PF00237.14 105 5e-36 119.6 1.3 1 1 4e-39 5.9e-36 119.3 1.3 1 104 6 114 6 115 0.95 # 42987 # 43385 # 1 # ID=24_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 k119_300574_55 - 124 Ribosomal_L14 PF00238.14 122 1.2e-50 167.0 0.2 1 1 9.1e-54 1.3e-50 166.9 0.2 1 122 1 123 1 123 0.99 # 45194 # 45565 # 1 # ID=24_55;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.559 k119_300574_52 - 139 Ribosomal_L16 PF00252.13 133 4.7e-49 162.2 0.8 1 1 3.6e-52 5.3e-49 162.1 0.8 1 133 4 133 4 133 0.99 # 44155 # 44571 # 1 # ID=24_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 k119_300574_47 - 104 Ribosomal_L23 PF00276.15 92 6.2e-25 83.7 1.9 1 1 4.7e-28 7e-25 83.5 1.9 2 88 14 99 13 102 0.94 # 41504 # 41815 # 1 # ID=24_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.554 k119_300574_57 - 198 Ribosomal_L5 PF00281.14 56 4.1e-24 80.9 0.2 1 1 4.7e-27 7e-24 80.1 0.2 1 56 35 91 35 91 0.99 # 45927 # 46520 # 1 # ID=24_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 k119_300574_45 - 217 Ribosomal_L3 PF00297.17 263 2.2e-45 151.8 7.6 1 1 8.5e-47 1.3e-43 146.0 7.6 1 263 14 210 14 210 0.97 # 40204 # 40854 # 1 # ID=24_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.585 k119_98971_9 - 141 Ribosomal_L11 PF00298.14 69 5.4e-31 103.3 3.3 1 1 4.1e-34 6.1e-31 103.1 2.5 1 69 71 139 71 139 0.99 # 6651 # 7073 # 1 # ID=61_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 k119_229426_29 - 90 Ribosomal_S15 PF00312.17 83 1.8e-28 94.9 0.3 1 1 1.4e-31 2e-28 94.7 0.3 2 83 7 88 6 88 0.98 # 29169 # 29438 # -1 # ID=10_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 k119_229426_61 - 332 Ribosomal_S2 PF00318.15 211 2.1e-79 262.3 0.0 1 1 1.7e-82 2.5e-79 262.1 0.0 1 210 9 224 9 225 0.99 # 63287 # 64282 # -1 # ID=10_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 k119_300574_61 - 228 Ribosomal_S5 PF00333.15 67 4.3e-32 106.4 2.7 1 1 5e-35 7.4e-32 105.7 2.7 1 67 53 119 53 119 0.97 # 47896 # 48579 # 1 # ID=24_61;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 k119_300574_54 - 105 Ribosomal_S17 PF00366.15 69 8.2e-29 96.2 0.5 1 1 7.4e-32 1.1e-28 95.8 0.5 1 68 31 98 31 99 0.98 # 44876 # 45190 # 1 # ID=24_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.590 k119_300574_73 - 169 Ribosomal_S9 PF00380.14 121 2.1e-43 144.1 0.3 1 1 1.8e-46 2.7e-43 143.8 0.3 1 121 47 168 47 168 0.99 # 56394 # 56900 # 1 # ID=24_73;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.572 k119_300574_58 - 133 Ribosomal_S8 PF00410.14 129 5.9e-49 161.9 0.0 1 1 4.4e-52 6.6e-49 161.8 0.0 1 129 5 132 5 132 0.97 # 46588 # 46986 # 1 # ID=24_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 k119_300574_68 - 133 Ribosomal_S11 PF00411.14 110 3.9e-50 165.4 0.3 1 1 3.4e-53 5.1e-50 165.0 0.3 1 110 22 131 22 131 0.99 # 52651 # 53049 # 1 # ID=24_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.609 k119_98971_14 - 172 Ribosomal_L10 PF00466.15 100 1e-24 83.1 0.0 1 1 1e-27 1.5e-24 82.6 0.0 4 100 2 96 1 96 0.97 # 10866 # 11381 # 1 # ID=61_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.552 k119_300574_36 - 1163 RNA_pol_Rpb2_6 PF00562.23 386 1.2e-151 501.6 0.0 1 1 1.3e-154 1.9e-151 500.9 0.0 2 386 576 1047 575 1047 0.98 # 25767 # 29255 # 1 # ID=24_36;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.570 k119_300574_72 - 149 Ribosomal_L13 PF00572.13 128 2e-53 176.5 0.1 1 1 1.6e-56 2.4e-53 176.3 0.1 1 126 16 141 16 143 0.98 # 55924 # 56370 # 1 # ID=24_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.591 k119_300574_46 - 216 Ribosomal_L4 PF00573.17 192 1.1e-61 204.3 0.2 1 1 8.5e-65 1.3e-61 204.1 0.2 1 189 18 204 18 207 0.97 # 40857 # 41504 # 1 # ID=24_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 k119_300574_37 - 1295 RNA_pol_Rpb1_2 PF00623.15 166 3.3e-52 173.5 0.0 1 1 3.3e-54 4.9e-51 169.7 0.0 1 165 419 560 419 561 0.95 # 29292 # 33176 # 1 # ID=24_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 k119_300574_57 - 198 Ribosomal_L5_C PF00673.16 95 7.8e-40 131.3 0.0 1 1 8.3e-43 1.2e-39 130.6 0.0 1 94 95 188 95 189 0.99 # 45927 # 46520 # 1 # ID=24_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 k119_98971_10 - 230 Ribosomal_L1 PF00687.16 220 1.2e-41 139.1 0.0 1 1 9.5e-45 1.4e-41 138.9 0.0 14 220 32 221 4 221 0.90 # 7142 # 7831 # 1 # ID=61_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.581 k119_300574_53 - 103 Ribosomal_L29 PF00831.18 58 3.2e-24 81.1 0.5 1 1 3.4e-27 5e-24 80.5 0.5 3 58 12 67 10 67 0.98 # 44571 # 44879 # 1 # ID=24_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 k119_300574_60 - 123 Ribosomal_L18p PF00861.17 119 5.5e-37 123.3 3.9 1 1 4.2e-40 6.3e-37 123.1 3.9 3 118 10 121 8 122 0.95 # 47531 # 47899 # 1 # ID=24_60;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.585 k119_219641_72 - 85 RNA_pol_Rpb6 PF01192.17 57 7.8e-12 41.5 0.1 1 2 6.8e-10 1e-06 25.1 0.0 1 25 13 37 13 44 0.92 # 78939 # 79193 # -1 # ID=11_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 k119_219641_72 - 85 RNA_pol_Rpb6 PF01192.17 57 7.8e-12 41.5 0.1 2 2 1.5e-06 0.0023 14.4 0.0 31 53 55 77 53 80 0.83 # 78939 # 79193 # -1 # ID=11_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 k119_301869_75 - 292 TruB_N PF01509.13 149 4e-51 169.8 0.1 1 1 3.7e-54 5.4e-51 169.4 0.1 1 149 24 177 24 177 0.96 # 77429 # 78304 # -1 # ID=32_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.599 k119_229426_102 - 505 SRP_SPB PF02978.14 104 2.4e-34 114.5 2.7 1 1 1.7e-37 2.6e-34 114.3 0.9 1 104 342 440 342 440 0.97 # 105560 # 107074 # -1 # ID=10_102;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.569 k119_300574_61 - 228 Ribosomal_S5_C PF03719.10 74 1.9e-30 100.7 0.9 1 1 2.3e-33 3.5e-30 99.9 0.9 1 74 128 201 128 201 0.99 # 47896 # 48579 # 1 # ID=24_61;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 k119_98971_9 - 141 Ribosomal_L11_N PF03946.9 60 2.6e-30 100.4 0.1 1 1 3.2e-33 4.8e-30 99.5 0.1 2 60 9 66 8 66 0.97 # 6651 # 7073 # 1 # ID=61_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 k119_300574_48 - 279 Ribosomal_L2_C PF03947.13 130 2e-56 186.1 3.0 1 1 2.2e-59 3.2e-56 185.4 3.0 1 129 125 252 125 253 0.99 # 41830 # 42666 # 1 # ID=24_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.578 k119_300574_36 - 1163 RNA_pol_Rpb2_7 PF04560.15 82 4.8e-31 103.6 0.1 1 1 7.9e-34 1.2e-30 102.4 0.1 1 80 1049 1123 1049 1125 0.98 # 25767 # 29255 # 1 # ID=24_36;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.570 k119_300574_36 - 1163 RNA_pol_Rpb2_2 PF04561.9 190 1.6e-30 102.7 3.6 1 2 1.2e-30 1.8e-27 92.7 0.0 1 178 167 339 167 344 0.95 # 25767 # 29255 # 1 # ID=24_36;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.570 k119_300574_36 - 1163 RNA_pol_Rpb2_2 PF04561.9 190 1.6e-30 102.7 3.6 2 2 3.1e-05 0.046 9.8 1.3 175 190 351 366 345 366 0.93 # 25767 # 29255 # 1 # ID=24_36;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.570 k119_300574_36 - 1163 RNA_pol_Rpb2_1 PF04563.10 203 4.1e-30 100.9 0.0 1 1 5.6e-33 8.2e-30 99.9 0.0 16 203 70 421 33 421 0.97 # 25767 # 29255 # 1 # ID=24_36;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.570 k119_300574_36 - 1163 RNA_pol_Rpb2_3 PF04565.11 68 5.9e-29 96.4 0.0 1 1 8.8e-32 1.3e-28 95.3 0.0 1 68 425 494 425 494 0.99 # 25767 # 29255 # 1 # ID=24_36;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.570 k119_300574_37 - 1295 RNA_pol_Rpb1_1 PF04997.7 337 1.2e-90 300.9 0.0 1 1 2e-92 3e-89 296.3 0.0 3 337 6 417 4 417 0.81 # 29292 # 33176 # 1 # ID=24_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 k119_300574_37 - 1295 RNA_pol_Rpb1_4 PF05000.12 108 1.8e-08 30.8 0.0 1 1 4.4e-11 6.5e-08 29.0 0.0 15 79 762 810 732 824 0.74 # 29292 # 33176 # 1 # ID=24_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 k119_229426_41 - 866 IF-2 PF11987.3 109 2.5e-37 123.8 1.3 1 1 3.8e-40 5.6e-37 122.7 1.3 2 108 648 755 647 756 0.97 # 41799 # 44396 # -1 # ID=10_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.596 k119_219641_90 - 886 TIGR00344 TIGR00344 847 2.4e-233 773.4 0.0 1 1 1.8e-236 2.7e-233 773.2 0.0 1 847 5 865 5 865 0.95 # 95424 # 98081 # -1 # ID=11_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 k119_12117_84 - 862 TIGR00422 TIGR00422 863 1.7e-165 548.7 0.0 1 2 6.2e-26 1.5e-23 79.1 0.0 10 92 14 101 9 108 0.92 # 82448 # 85033 # -1 # ID=12_84;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.575 k119_12117_84 - 862 TIGR00422 TIGR00422 863 1.7e-165 548.7 0.0 2 2 2.6e-143 6.3e-141 467.4 0.0 101 756 135 817 126 852 0.90 # 82448 # 85033 # -1 # ID=12_84;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.575 k119_12117_90 - 1066 TIGR00422 TIGR00422 863 5e-105 348.7 0.0 1 2 1.7e-30 4.3e-28 94.1 0.0 9 233 20 258 15 260 0.89 # 91145 # 94342 # 1 # ID=12_90;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 k119_12117_90 - 1066 TIGR00422 TIGR00422 863 5e-105 348.7 0.0 2 2 2.7e-78 6.6e-76 252.3 0.0 256 760 338 861 332 901 0.87 # 91145 # 94342 # 1 # ID=12_90;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.584 k119_301869_90 - 853 TIGR00422 TIGR00422 863 7e-73 242.3 10.5 1 6 5.9e-33 1.5e-30 102.3 1.2 3 187 13 182 11 185 0.90 # 93094 # 95652 # -1 # ID=32_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 k119_301869_90 - 853 TIGR00422 TIGR00422 863 7e-73 242.3 10.5 2 6 0.0029 0.72 4.1 0.0 342 396 186 238 180 242 0.86 # 93094 # 95652 # -1 # ID=32_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 k119_301869_90 - 853 TIGR00422 TIGR00422 863 7e-73 242.3 10.5 3 6 8.2e-05 0.02 9.2 0.1 204 241 250 285 240 290 0.80 # 93094 # 95652 # -1 # ID=32_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 k119_301869_90 - 853 TIGR00422 TIGR00422 863 7e-73 242.3 10.5 4 6 2.4e-09 6e-07 24.2 0.0 241 302 323 384 317 392 0.92 # 93094 # 95652 # -1 # ID=32_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 k119_301869_90 - 853 TIGR00422 TIGR00422 863 7e-73 242.3 10.5 5 6 7.4e-29 1.8e-26 88.7 0.0 397 583 454 673 450 679 0.87 # 93094 # 95652 # -1 # ID=32_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 k119_301869_90 - 853 TIGR00422 TIGR00422 863 7e-73 242.3 10.5 6 6 1e-05 0.0026 12.2 0.0 679 753 747 817 703 851 0.75 # 93094 # 95652 # -1 # ID=32_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 k119_229426_179 - 528 TIGR00422 TIGR00422 863 4.5e-35 117.2 0.0 1 3 1.6e-10 3.8e-08 28.1 0.1 30 179 4 136 1 150 0.75 # 182878 # 184461 # -1 # ID=10_179;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.554 k119_229426_179 - 528 TIGR00422 TIGR00422 863 4.5e-35 117.2 0.0 2 3 0.0015 0.38 5.0 0.0 348 414 161 228 155 237 0.87 # 182878 # 184461 # -1 # ID=10_179;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.554 k119_229426_179 - 528 TIGR00422 TIGR00422 863 4.5e-35 117.2 0.0 3 3 9.4e-25 2.3e-22 75.2 0.0 450 702 234 487 230 504 0.85 # 182878 # 184461 # -1 # ID=10_179;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.554 k119_12117_19 - 605 TIGR00422 TIGR00422 863 6.3e-09 30.7 0.0 1 2 3e-06 0.00075 13.9 0.0 43 93 183 233 175 242 0.88 # 21452 # 23266 # 1 # ID=12_19;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.583 k119_12117_19 - 605 TIGR00422 TIGR00422 863 6.3e-09 30.7 0.0 2 2 1.9e-06 0.00047 14.6 0.0 512 557 415 459 407 483 0.86 # 21452 # 23266 # 1 # ID=12_19;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.583 k119_244101_10 - 469 TIGR00422 TIGR00422 863 0.00062 14.2 0.0 1 1 7.7e-06 0.0019 12.6 0.0 518 558 265 305 256 317 0.84 # 8158 # 9564 # -1 # ID=46_10;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 # # Program: hmmsearch # Version: 3.3.1 (Jul 2020) # Pipeline mode: SEARCH # Query file: /tmp/dfc78cda-3a8e-4316-a61c-646c1c5f6d91 # Target file: output_checkM/bins/bin.4/genes.faa # Option settings: hmmsearch --domtblout output_checkM/bins/bin.4/hmmer.tree.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dfc78cda-3a8e-4316-a61c-646c1c5f6d91 output_checkM/bins/bin.4/genes.faa # Current dir: /yoshitake/test/metagenome~metaWRAP # Date: Wed Jan 19 03:50:09 2022 # [ok]