# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- k119_306839_2 - 76 Ribosom_S12_S23 PF00164.20 122 4.3e-35 117.1 0.9 1 1 2.1e-38 4.7e-35 117.0 0.9 48 122 1 75 1 75 0.99 # 954 # 1181 # 1 # ID=948_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 k119_306839_3 - 157 Ribosomal_S7 PF00177.16 148 5.1e-64 211.6 2.7 1 1 2.5e-67 5.7e-64 211.5 2.7 1 148 1 149 1 149 0.99 # 1192 # 1662 # 1 # ID=948_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.465 k119_95364_1 - 217 Ribosomal_L2 PF00181.18 77 5.1e-35 116.6 0.3 1 1 6.1e-38 1.4e-34 115.2 0.3 1 76 42 117 42 118 0.99 # 3 # 653 # -1 # ID=620_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.493 k119_154538_2 - 240 Ribosomal_S3_C PF00189.15 85 2.1e-33 111.7 0.1 1 1 1.5e-36 3.5e-33 111.0 0.1 1 85 119 202 119 202 0.97 # 526 # 1245 # -1 # ID=565_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 k119_154538_3 - 127 Ribosomal_L22 PF00237.14 105 2.6e-33 111.4 0.6 1 1 1.4e-36 3.1e-33 111.2 0.6 1 104 17 120 17 121 0.98 # 1245 # 1625 # -1 # ID=565_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.420 k119_251817_5 - 57 Ribosomal_L14 PF00238.14 122 2e-20 70.1 0.0 1 1 9e-24 2e-20 70.0 0.0 69 122 3 56 1 56 0.96 # 1512 # 1682 # -1 # ID=371_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.427 k119_154538_1 - 138 Ribosomal_L16 PF00252.13 133 1.3e-53 177.6 0.8 1 1 6.4e-57 1.4e-53 177.5 0.8 1 132 4 132 4 133 0.99 # 101 # 514 # -1 # ID=565_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.471 k119_95364_2 - 99 Ribosomal_L23 PF00276.15 92 5.4e-27 90.9 1.4 1 1 5.3e-30 5.9e-27 90.8 1.4 1 89 8 95 8 98 0.94 # 804 # 1100 # -1 # ID=620_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.414 k119_144527_4 - 99 Ribosomal_L23 PF00276.15 92 9.6e-23 77.3 0.1 1 1 9.3e-26 1e-22 77.2 0.1 2 90 8 96 7 98 0.94 # 1461 # 1757 # 1 # ID=599_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 k119_251817_3 - 187 Ribosomal_L5 PF00281.14 56 1.4e-20 70.2 0.1 1 1 1e-23 2.3e-20 69.4 0.1 1 56 31 87 31 87 0.98 # 645 # 1205 # -1 # ID=371_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 k119_144527_2 - 213 Ribosomal_L3 PF00297.17 263 1.5e-46 156.2 9.6 1 1 5.8e-48 6.6e-45 150.8 9.6 1 263 9 205 9 205 0.98 # 207 # 845 # 1 # ID=599_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 k119_95364_4 - 254 Ribosomal_L3 PF00297.17 263 3.4e-42 142.0 7.3 1 1 1.4e-43 1.6e-40 136.5 7.3 1 263 9 205 9 205 0.95 # 1711 # 2472 # -1 # ID=620_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.463 k119_266729_3 - 150 Ribosomal_L11 PF00298.14 69 6.4e-30 100.4 0.4 1 1 6.6e-33 1.5e-29 99.3 0.4 1 69 72 148 72 148 0.97 # 1629 # 2078 # 1 # ID=945_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 k119_251583_3 - 90 Ribosomal_S15 PF00312.17 83 6.5e-27 90.4 0.4 1 1 3.3e-30 7.4e-27 90.3 0.4 3 83 8 88 6 88 0.97 # 802 # 1071 # -1 # ID=342_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.426 k119_302002_2 - 191 Ribosomal_S5 PF00333.15 67 2e-29 98.4 3.5 1 1 2.9e-32 3.3e-29 97.8 3.5 1 66 19 84 19 85 0.97 # 323 # 895 # 1 # ID=458_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.482 k119_298475_1 - 117 Ribosomal_S5 PF00333.15 67 8.6e-08 29.1 0.8 1 1 1.5e-10 1.7e-07 28.2 0.3 42 66 1 25 1 26 0.96 # 1 # 351 # 1 # ID=84_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.470 k119_148784_2 - 163 Ribosomal_S9 PF00380.14 121 1.6e-46 154.8 1.0 1 1 1.8e-49 2e-46 154.5 1.0 1 121 42 162 42 162 1.00 # 617 # 1105 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.493 k119_12310_3 - 68 Ribosomal_S9 PF00380.14 121 5.5e-26 88.5 0.9 1 1 5.3e-29 5.9e-26 88.4 0.9 56 121 2 67 1 67 0.99 # 996 # 1199 # -1 # ID=227_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 k119_251817_1 - 104 Ribosomal_S8 PF00410.14 129 5.6e-31 104.4 0.0 1 1 2.7e-34 6.1e-31 104.2 0.0 1 103 3 104 3 104 0.98 # 3 # 314 # -1 # ID=371_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.494 k119_298475_6 - 131 Ribosomal_S11 PF00411.14 110 1.2e-48 161.2 0.1 1 1 1.5e-51 1.7e-48 160.7 0.1 1 110 20 129 20 129 0.99 # 2956 # 3348 # 1 # ID=84_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 k119_159247_2 - 130 Ribosomal_S11 PF00411.14 110 1.9e-47 157.3 0.2 1 1 2e-50 2.2e-47 157.1 0.2 1 110 19 128 19 128 0.99 # 509 # 898 # -1 # ID=55_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.503 k119_66934_1 - 121 Ribosomal_L10 PF00466.15 100 6.3e-28 94.0 0.0 1 1 6.8e-31 7.6e-28 93.7 0.0 4 100 6 101 4 101 0.98 # 1 # 363 # -1 # ID=770_1;partial=10;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.482 k119_266729_5 - 171 Ribosomal_L10 PF00466.15 100 3.7e-26 88.3 0.0 1 1 4.4e-29 4.9e-26 87.9 0.0 1 100 1 98 1 98 0.97 # 3200 # 3712 # 1 # ID=945_5;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 k119_303722_1 - 389 RNA_pol_Rpb2_6 PF00562.23 386 8.2e-90 298.6 0.0 1 1 4.6e-93 1e-89 298.2 0.0 161 377 2 389 1 389 0.99 # 3 # 1169 # -1 # ID=632_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.470 k119_148784_1 - 153 Ribosomal_L13 PF00572.13 128 2e-51 170.7 0.0 1 1 1e-54 2.3e-51 170.5 0.0 1 127 15 141 15 142 0.98 # 155 # 613 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.436 k119_144527_3 - 201 Ribosomal_L4 PF00573.17 192 1.7e-63 210.8 0.7 1 1 1.7e-66 1.9e-63 210.6 0.7 1 191 11 197 11 198 0.99 # 862 # 1464 # 1 # ID=599_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 k119_95364_3 - 206 Ribosomal_L4 PF00573.17 192 4.3e-61 202.9 0.1 1 1 4.3e-64 4.9e-61 202.8 0.1 1 192 16 203 16 203 0.97 # 1097 # 1714 # -1 # ID=620_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.464 k119_79430_1 - 929 RNA_pol_Rpb1_2 PF00623.15 166 1.1e-52 175.6 0.0 1 1 8.3e-55 1.9e-51 171.6 0.0 1 166 97 239 97 239 0.96 # 3 # 2789 # -1 # ID=12_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.450 k119_251817_3 - 187 Ribosomal_L5_C PF00673.16 95 6.4e-40 132.1 0.0 1 1 6e-43 1.4e-39 131.1 0.0 1 95 91 185 91 185 0.99 # 645 # 1205 # -1 # ID=371_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 k119_266729_4 - 233 Ribosomal_L1 PF00687.16 220 3.1e-52 174.4 0.0 1 1 3.2e-55 3.6e-52 174.2 0.0 14 220 32 221 3 221 0.92 # 2080 # 2778 # 1 # ID=945_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 k119_66934_2 - 180 Ribosomal_L1 PF00687.16 220 4.3e-44 147.7 0.0 1 1 4.3e-47 4.8e-44 147.6 0.0 36 220 2 169 1 169 0.93 # 636 # 1175 # -1 # ID=770_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.470 k119_302002_1 - 71 Ribosomal_L18p PF00861.17 119 6.1e-20 68.9 1.8 1 1 2.9e-23 6.6e-20 68.8 1.8 47 119 2 70 1 70 0.94 # 3 # 215 # 1 # ID=458_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.455 k119_239321_2 - 118 RNA_pol_Rpb6 PF01192.17 57 5.5e-18 61.8 0.1 1 1 1.8e-20 2.1e-17 60.0 0.0 1 52 7 57 7 61 0.96 # 363 # 716 # 1 # ID=132_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.446 k119_132846_2 - 108 RNA_pol_Rpb6 PF01192.17 57 1.8e-16 57.0 0.0 1 1 2.9e-19 3.2e-16 56.1 0.0 1 54 7 60 7 63 0.97 # 318 # 641 # -1 # ID=387_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 k119_225805_6 - 47 TruB_N PF01509.13 149 0.0025 15.3 0.0 1 1 1.5e-06 0.0033 14.9 0.0 1 16 32 47 32 47 0.93 # 2637 # 2777 # 1 # ID=785_6;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 k119_110098_9 - 501 SRP_SPB PF02978.14 104 1.5e-31 106.0 8.9 1 1 6.9e-35 1.5e-31 106.0 8.9 2 104 329 428 328 428 0.95 # 5449 # 6951 # 1 # ID=79_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.473 k119_298475_1 - 117 Ribosomal_S5_C PF03719.10 74 9.2e-33 108.7 0.5 1 1 1.2e-35 1.3e-32 108.2 0.5 3 74 37 108 35 108 0.97 # 1 # 351 # 1 # ID=84_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.470 k119_302002_2 - 191 Ribosomal_S5_C PF03719.10 74 4.7e-31 103.2 0.2 1 1 6.3e-34 7.1e-31 102.6 0.2 2 74 96 168 95 168 0.98 # 323 # 895 # 1 # ID=458_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.482 k119_266729_3 - 150 Ribosomal_L11_N PF03946.9 60 4.6e-31 103.4 0.2 1 1 3.7e-34 8.3e-31 102.6 0.2 2 60 9 67 8 67 0.98 # 1629 # 2078 # 1 # ID=945_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 k119_95364_1 - 217 Ribosomal_L2_C PF03947.13 130 4.3e-33 111.2 0.1 1 1 3.1e-36 7e-33 110.5 0.1 1 94 124 217 124 217 0.98 # 3 # 653 # -1 # ID=620_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.493 k119_266729_7 - 317 RNA_pol_Rpb2_2 PF04561.9 190 2.2e-06 24.5 0.0 1 1 1.5e-09 3.4e-06 23.9 0.0 24 71 182 228 157 241 0.82 # 4428 # 5378 # 1 # ID=945_7;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.415 k119_266729_7 - 317 RNA_pol_Rpb2_1 PF04563.10 203 2.2e-18 63.2 0.0 1 1 4.7e-21 1e-17 61.0 0.0 1 150 26 271 26 311 0.78 # 4428 # 5378 # 1 # ID=945_7;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.415 k119_79430_1 - 929 RNA_pol_Rpb1_1 PF04997.7 337 8.4e-40 134.3 2.4 1 1 5.4e-43 1.2e-39 133.8 2.4 242 337 1 95 1 95 0.98 # 3 # 2789 # -1 # ID=12_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.450 k119_79430_1 - 929 RNA_pol_Rpb1_4 PF05000.12 108 1.6e-15 54.1 0.7 1 1 1.6e-18 3.6e-15 52.9 0.7 1 107 424 510 424 511 0.83 # 3 # 2789 # -1 # ID=12_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.450 k119_183272_6 - 345 IF-2 PF11987.3 109 2.5e-40 134.1 0.9 1 1 2.3e-43 5.1e-40 133.1 0.9 2 109 126 234 125 234 0.97 # 6400 # 7434 # -1 # ID=479_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.457 k119_195_3 - 228 TIGR00344 TIGR00344 847 1.1e-34 116.8 0.4 1 1 1.2e-37 1.3e-34 116.5 0.4 653 846 12 207 7 208 0.89 # 694 # 1377 # -1 # ID=19_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.437 k119_210079_1 - 523 TIGR00344 TIGR00344 847 0.0026 13.0 0.0 1 1 3e-06 0.0034 12.6 0.0 590 670 1 88 1 104 0.86 # 1 # 1569 # 1 # ID=180_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.463 k119_47000_1 - 316 TIGR00422 TIGR00422 863 1.1e-114 381.3 0.0 1 1 4.1e-117 1.3e-114 381.0 0.0 3 278 4 316 2 316 0.91 # 2 # 949 # -1 # ID=702_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 k119_209229_1 - 507 TIGR00422 TIGR00422 863 2.8e-70 234.3 0.0 1 2 1.1e-36 3.5e-34 114.9 0.0 7 232 21 256 15 258 0.90 # 1 # 1521 # -1 # ID=87_1;partial=10;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.468 k119_209229_1 - 507 TIGR00422 TIGR00422 863 2.8e-70 234.3 0.0 2 2 1.8e-37 5.7e-35 117.5 0.0 243 430 303 490 295 503 0.90 # 1 # 1521 # -1 # ID=87_1;partial=10;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.468 k119_281167_2 - 482 TIGR00422 TIGR00422 863 1.4e-45 152.6 0.0 1 1 5.1e-48 1.6e-45 152.4 0.0 396 733 9 371 1 421 0.85 # 64 # 1509 # -1 # ID=402_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 k119_46938_1 - 356 TIGR00422 TIGR00422 863 1.1e-22 76.9 0.2 1 1 3.7e-24 1.2e-21 73.4 0.2 525 720 125 292 122 302 0.82 # 1 # 1068 # 1 # ID=697_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.445 k119_199239_1 - 195 TIGR00422 TIGR00422 863 4.5e-08 28.5 0.1 1 1 1.7e-10 5.5e-08 28.2 0.1 41 93 15 67 2 91 0.86 # 3 # 587 # -1 # ID=83_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.438 k119_75855_2 - 48 TIGR00422 TIGR00422 863 0.0018 13.3 0.0 1 1 5.7e-06 0.0018 13.2 0.0 41 76 10 46 2 48 0.86 # 1327 # 1470 # 1 # ID=656_2;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.438 k119_19464_1 - 330 TIGR00422 TIGR00422 863 0.0028 12.7 0.0 1 2 0.039 13 0.6 0.0 42 129 29 118 14 125 0.74 # 25 # 1014 # 1 # ID=885_1;partial=01;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 k119_19464_1 - 330 TIGR00422 TIGR00422 863 0.0028 12.7 0.0 2 2 6.5e-05 0.021 9.7 0.0 523 553 287 316 276 324 0.81 # 25 # 1014 # 1 # ID=885_1;partial=01;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 # # Program: hmmsearch # Version: 3.3.1 (Jul 2020) # Pipeline mode: SEARCH # Query file: /tmp/c75725ea-1d4e-4eba-a30a-66e32b690d44 # Target file: output_checkM/bins/bin.15/genes.faa # Option settings: hmmsearch --domtblout output_checkM/bins/bin.15/hmmer.tree.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c75725ea-1d4e-4eba-a30a-66e32b690d44 output_checkM/bins/bin.15/genes.faa # Current dir: /yoshitake/test/metagenome~metaWRAP # Date: Wed Jan 19 03:50:05 2022 # [ok]