# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- k119_173397_2 - 125 Ribosom_S12_S23 PF00164.20 122 1.8e-57 188.6 2.8 1 1 1.5e-60 2e-57 188.4 2.8 1 122 2 123 2 123 0.99 # 457 # 831 # -1 # ID=249_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 k119_173397_1 - 144 Ribosomal_S7 PF00177.16 148 3.4e-56 185.5 1.3 1 1 2.9e-59 3.7e-56 185.3 1.3 3 144 2 144 1 144 0.99 # 2 # 433 # -1 # ID=249_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 k119_263398_3 - 256 Ribosomal_L2 PF00181.18 77 4.6e-35 116.0 1.9 1 1 3.4e-37 2.1e-34 113.8 1.7 1 77 42 118 42 118 0.99 # 890 # 1657 # 1 # ID=357_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 k119_211709_7 - 275 Ribosomal_L2 PF00181.18 77 4.8e-29 96.7 0.2 1 1 6.5e-31 4.2e-28 93.7 0.2 1 77 42 118 42 118 0.99 # 2225 # 3049 # -1 # ID=175_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.448 k119_211709_4 - 235 Ribosomal_S3_C PF00189.15 85 7.7e-32 105.9 0.1 1 1 1.4e-34 1.7e-31 104.8 0.1 1 85 118 201 118 201 0.97 # 827 # 1531 # -1 # ID=175_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.447 k119_211709_6 - 89 Ribosomal_S19 PF00203.16 81 7e-35 115.0 0.3 1 1 6.1e-38 7.8e-35 114.9 0.3 1 81 3 83 3 83 0.97 # 1947 # 2213 # -1 # ID=175_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.423 k119_211709_5 - 133 Ribosomal_L22 PF00237.14 105 4.1e-31 103.6 0.2 1 1 3.2e-34 4.1e-31 103.6 0.2 1 104 22 128 22 129 0.94 # 1542 # 1940 # -1 # ID=175_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 k119_20681_4 - 123 Ribosomal_L14 PF00238.14 122 3.2e-53 175.2 0.6 1 1 2.7e-56 3.5e-53 175.0 0.6 1 122 1 122 1 122 0.99 # 975 # 1343 # -1 # ID=59_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.447 k119_211709_3 - 140 Ribosomal_L16 PF00252.13 133 2.2e-52 172.8 1.5 1 1 1.9e-55 2.4e-52 172.7 1.5 1 132 4 132 4 133 0.99 # 398 # 817 # -1 # ID=175_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.443 k119_211709_8 - 97 Ribosomal_L23 PF00276.15 92 1.7e-24 82.1 2.0 1 1 3e-27 1.9e-24 82.0 2.0 1 89 1 93 1 96 0.91 # 3055 # 3345 # -1 # ID=175_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.378 k119_263398_2 - 97 Ribosomal_L23 PF00276.15 92 1.5e-22 75.9 1.3 1 1 2.7e-25 1.7e-22 75.7 1.3 2 91 2 95 1 96 0.87 # 590 # 880 # 1 # ID=357_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 k119_20681_2 - 183 Ribosomal_L5 PF00281.14 56 1.6e-18 62.8 0.5 1 1 3.1e-21 4e-18 61.5 0.5 1 56 27 83 27 83 0.99 # 86 # 634 # -1 # ID=59_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 k119_211709_10 - 206 Ribosomal_L3 PF00297.17 263 4.8e-42 140.6 7.6 1 2 3.2e-06 0.0041 13.0 0.1 1 43 8 40 8 42 0.87 # 3979 # 4596 # -1 # ID=175_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.450 k119_211709_10 - 206 Ribosomal_L3 PF00297.17 263 4.8e-42 140.6 7.6 2 2 1.3e-41 1.7e-38 129.0 4.8 73 262 42 203 39 204 0.93 # 3979 # 4596 # -1 # ID=175_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.450 k119_13217_2 - 146 Ribosomal_L11 PF00298.14 69 1.5e-28 95.3 1.0 1 1 1.9e-31 2.4e-28 94.6 1.0 1 69 71 139 71 139 0.99 # 82 # 519 # -1 # ID=166_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 k119_21892_2 - 90 Ribosomal_S15 PF00312.17 83 2.6e-27 91.0 0.9 1 1 2.3e-30 2.9e-27 90.8 0.9 2 83 7 88 6 88 0.98 # 478 # 747 # -1 # ID=119_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 k119_64119_2 - 270 Ribosomal_S2 PF00318.15 211 5e-75 247.8 0.0 1 1 5e-78 6.4e-75 247.5 0.0 1 209 31 245 31 247 0.98 # 941 # 1750 # -1 # ID=288_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 k119_267113_1 - 171 Ribosomal_S5 PF00333.15 67 2.2e-28 94.3 2.2 1 1 2e-31 2.6e-28 94.1 1.2 1 66 13 78 13 79 0.97 # 92 # 604 # 1 # ID=551_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.441 k119_20681_5 - 80 Ribosomal_S17 PF00366.15 69 3.4e-32 106.8 3.7 1 1 6e-35 3.9e-32 106.7 3.7 1 69 6 74 6 74 0.99 # 1346 # 1585 # -1 # ID=59_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 k119_211709_1 - 63 Ribosomal_S17 PF00366.15 69 1.2e-19 66.7 2.0 1 1 2.1e-22 1.4e-19 66.4 2.0 1 51 13 63 13 63 0.99 # 2 # 190 # -1 # ID=175_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.444 k119_64119_3 - 129 Ribosomal_S9 PF00380.14 121 3.2e-48 159.5 0.1 1 1 2.8e-51 3.6e-48 159.3 0.1 1 121 8 128 8 128 1.00 # 1769 # 2155 # -1 # ID=288_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.439 k119_93696_1 - 131 Ribosomal_S11 PF00411.14 110 2.1e-42 140.3 0.0 1 1 2e-45 2.6e-42 140.0 0.0 1 110 20 129 20 129 0.99 # 8 # 400 # -1 # ID=238_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.427 k119_14935_3 - 177 Ribosomal_L10 PF00466.15 100 9e-25 83.0 0.4 1 1 2.7e-27 1.7e-24 82.1 0.1 4 100 6 101 3 101 0.97 # 820 # 1350 # -1 # ID=258_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.450 k119_199168_2 - 174 Ribosomal_L10 PF00466.15 100 9.2e-18 60.6 0.5 1 1 1.4e-20 9.2e-18 60.6 0.5 1 100 1 100 1 100 0.95 # 662 # 1183 # 1 # ID=52_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 k119_40777_2 - 130 RNA_pol_Rpb2_6 PF00562.23 386 6.6e-26 87.4 0.3 1 1 6.3e-29 8e-26 87.1 0.3 334 386 1 53 1 53 0.99 # 757 # 1146 # -1 # ID=64_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.441 k119_64119_4 - 152 Ribosomal_L13 PF00572.13 128 2.4e-55 182.5 0.1 1 1 2.2e-58 2.9e-55 182.3 0.1 1 127 20 146 20 147 0.99 # 2166 # 2621 # -1 # ID=288_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.474 k119_211709_9 - 209 Ribosomal_L4 PF00573.17 192 2.2e-62 206.4 1.1 1 1 3.8e-65 2.5e-62 206.2 1.1 1 190 17 204 17 206 0.99 # 3353 # 3979 # -1 # ID=175_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 k119_263398_1 - 195 Ribosomal_L4 PF00573.17 192 3.9e-61 202.3 3.5 1 1 6.8e-64 4.4e-61 202.1 3.5 1 190 1 188 1 190 0.99 # 1 # 585 # 1 # ID=357_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 k119_51889_1 - 1190 RNA_pol_Rpb1_2 PF00623.15 166 8.2e-48 159.0 0.0 1 1 6.9e-49 8.8e-46 152.4 0.0 1 165 305 446 305 447 0.93 # 1 # 3570 # -1 # ID=135_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.448 k119_20681_2 - 183 Ribosomal_L5_C PF00673.16 95 3.9e-42 138.4 0.0 1 1 6.4e-45 8.2e-42 137.4 0.0 1 94 87 180 87 181 0.99 # 86 # 634 # -1 # ID=59_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 k119_199168_1 - 214 Ribosomal_L1 PF00687.16 220 1.7e-46 154.8 0.0 1 1 3.1e-49 2e-46 154.6 0.0 16 220 17 204 8 204 0.93 # 2 # 643 # 1 # ID=52_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.425 k119_14935_4 - 148 Ribosomal_L1 PF00687.16 220 1.7e-30 102.5 0.0 1 1 2.9e-33 1.9e-30 102.4 0.0 79 220 2 137 1 137 0.96 # 1586 # 2029 # -1 # ID=258_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 k119_211709_2 - 65 Ribosomal_L29 PF00831.18 58 1e-15 53.7 0.9 1 1 8.6e-19 1.1e-15 53.6 0.9 2 58 4 60 3 60 0.96 # 198 # 392 # -1 # ID=175_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 k119_89106_2 - 109 RNA_pol_Rpb6 PF01192.17 57 1e-08 31.3 1.2 1 1 1.8e-11 2.3e-08 30.2 0.8 5 57 22 75 18 75 0.95 # 616 # 942 # -1 # ID=543_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 k119_267113_1 - 171 Ribosomal_S5_C PF03719.10 74 2.6e-32 106.4 1.0 1 1 3.3e-35 4.2e-32 105.8 0.5 3 74 90 161 89 161 0.98 # 92 # 604 # 1 # ID=551_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.441 k119_13217_2 - 146 Ribosomal_L11_N PF03946.9 60 5.4e-29 96.0 0.2 1 1 6.7e-32 8.5e-29 95.3 0.2 1 60 8 66 8 66 0.98 # 82 # 519 # -1 # ID=166_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 k119_211709_7 - 275 Ribosomal_L2_C PF03947.13 130 7e-53 174.4 0.5 1 1 1.9e-55 1.2e-52 173.6 0.5 2 128 125 249 124 251 0.96 # 2225 # 3049 # -1 # ID=175_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.448 k119_263398_3 - 256 Ribosomal_L2_C PF03947.13 130 2.1e-49 163.2 0.1 1 1 5.6e-52 3.6e-49 162.4 0.1 2 126 125 247 124 251 0.96 # 890 # 1657 # 1 # ID=357_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 k119_40777_2 - 130 RNA_pol_Rpb2_7 PF04560.15 82 8.6e-31 102.6 0.0 1 1 1.1e-33 1.4e-30 101.9 0.0 1 79 55 128 55 129 0.98 # 757 # 1146 # -1 # ID=64_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.441 k119_45503_1 - 383 RNA_pol_Rpb2_2 PF04561.9 190 2.2e-32 108.5 2.8 1 2 2.4e-11 3.1e-08 29.7 0.0 1 72 111 181 111 253 0.88 # 1 # 1149 # 1 # ID=307_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 k119_45503_1 - 383 RNA_pol_Rpb2_2 PF04561.9 190 2.2e-32 108.5 2.8 2 2 3.1e-26 4e-23 78.3 1.6 75 189 258 376 243 377 0.91 # 1 # 1149 # 1 # ID=307_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 k119_45503_1 - 383 RNA_pol_Rpb2_1 PF04563.10 203 2.1e-08 29.8 0.0 1 1 1.6e-10 1e-07 27.6 0.0 16 150 10 261 8 365 0.77 # 1 # 1149 # 1 # ID=307_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.409 k119_199168_4 - 127 RNA_pol_Rpb2_1 PF04563.10 203 0.00036 16.0 0.0 1 1 6.6e-07 0.00042 15.8 0.0 1 88 25 110 25 127 0.82 # 1701 # 2081 # 1 # ID=52_4;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.430 k119_51889_1 - 1190 RNA_pol_Rpb1_1 PF04997.7 337 1.2e-70 234.9 0.0 1 1 3.1e-73 2e-70 234.2 0.0 54 337 21 303 2 303 0.86 # 1 # 3570 # -1 # ID=135_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.448 k119_40777_1 - 233 RNA_pol_Rpb1_1 PF04997.7 337 2.3e-33 112.3 0.0 1 1 4.5e-36 2.9e-33 112.0 0.0 3 197 13 216 11 232 0.78 # 3 # 701 # -1 # ID=64_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.455 k119_51889_1 - 1190 RNA_pol_Rpb1_4 PF05000.12 108 2.3e-17 59.2 0.9 1 1 1.8e-20 2.3e-17 59.2 0.9 1 107 633 718 633 719 0.88 # 1 # 3570 # -1 # ID=135_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.448 k119_44790_1 - 379 IF-2 PF11987.3 109 2.6e-15 52.8 0.3 1 1 2e-18 2.6e-15 52.8 0.3 2 55 326 379 325 379 0.96 # 2 # 1138 # 1 # ID=269_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.465 k119_161488_1 - 379 TIGR00344 TIGR00344 847 8.5e-108 357.9 0.6 1 1 1.6e-110 1e-107 357.6 0.6 231 620 1 371 1 378 0.94 # 2 # 1138 # -1 # ID=151_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.470 k119_47265_4 - 266 TIGR00344 TIGR00344 847 2e-100 333.4 1.0 1 1 3.6e-103 2.3e-100 333.3 1.0 1 221 28 265 28 266 0.95 # 1495 # 2292 # 1 # ID=414_4;partial=01;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.447 k119_121914_1 - 640 TIGR00422 TIGR00422 863 2.5e-245 812.6 3.8 1 1 1.6e-247 2.9e-245 812.4 3.8 4 649 6 639 3 640 0.97 # 2 # 1921 # -1 # ID=159_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.459 k119_276620_3 - 1142 TIGR00422 TIGR00422 863 4e-105 348.8 1.1 1 2 1.7e-29 3.1e-27 91.1 0.1 6 234 11 254 7 270 0.87 # 1061 # 4486 # 1 # ID=480_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 k119_276620_3 - 1142 TIGR00422 TIGR00422 863 4e-105 348.8 1.1 2 2 3.9e-79 7.2e-77 255.3 0.1 318 849 446 1028 334 1042 0.82 # 1061 # 4486 # 1 # ID=480_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 k119_114962_2 - 685 TIGR00422 TIGR00422 863 9.6e-42 139.1 6.3 1 5 3.8e-22 7e-20 66.8 2.1 4 161 2 144 1 147 0.87 # 594 # 2648 # 1 # ID=345_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 k119_114962_2 - 685 TIGR00422 TIGR00422 863 9.6e-42 139.1 6.3 2 5 9.3e-05 0.017 9.2 0.0 163 188 203 228 193 263 0.90 # 594 # 2648 # 1 # ID=345_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 k119_114962_2 - 685 TIGR00422 TIGR00422 863 9.6e-42 139.1 6.3 3 5 0.00065 0.12 6.5 0.0 201 235 289 321 270 330 0.85 # 594 # 2648 # 1 # ID=345_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 k119_114962_2 - 685 TIGR00422 TIGR00422 863 9.6e-42 139.1 6.3 4 5 1.3e-14 2.4e-12 41.8 0.0 241 330 362 461 359 469 0.90 # 594 # 2648 # 1 # ID=345_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 k119_114962_2 - 685 TIGR00422 TIGR00422 863 9.6e-42 139.1 6.3 5 5 6.2e-05 0.011 9.8 0.0 397 419 469 491 465 501 0.88 # 594 # 2648 # 1 # ID=345_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.471 k119_282420_1 - 227 TIGR00422 TIGR00422 863 5.3e-21 70.5 0.1 1 1 6e-21 1.1e-18 62.8 0.1 527 723 1 165 1 173 0.85 # 1 # 681 # 1 # ID=291_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.436 k119_264021_1 - 398 TIGR00422 TIGR00422 863 4.1e-09 31.1 0.0 1 2 0.00012 0.022 8.9 0.0 342 415 47 120 38 135 0.85 # 3 # 1196 # 1 # ID=387_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 k119_264021_1 - 398 TIGR00422 TIGR00422 863 4.1e-09 31.1 0.0 2 2 4.4e-08 8.1e-06 20.2 0.0 523 700 202 383 194 395 0.84 # 3 # 1196 # 1 # ID=387_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 k119_37298_2 - 496 TIGR00422 TIGR00422 863 5.9e-05 17.4 0.0 1 2 0.00038 0.069 7.2 0.0 41 81 37 77 19 120 0.85 # 255 # 1742 # 1 # ID=526_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 k119_37298_2 - 496 TIGR00422 TIGR00422 863 5.9e-05 17.4 0.0 2 2 0.00022 0.04 8.0 0.0 521 573 284 343 275 372 0.71 # 255 # 1742 # 1 # ID=526_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 k119_292927_6 - 223 TIGR00422 TIGR00422 863 0.003 11.7 0.0 1 1 2.3e-05 0.0041 11.3 0.0 520 536 186 202 177 208 0.89 # 3536 # 4204 # 1 # ID=298_6;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 # # Program: hmmsearch # Version: 3.3.1 (Jul 2020) # Pipeline mode: SEARCH # Query file: /tmp/572937cd-2c83-439c-8241-795e4f5b09a3 # Target file: output_checkM/bins/bin.14/genes.faa # Option settings: hmmsearch --domtblout output_checkM/bins/bin.14/hmmer.tree.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/572937cd-2c83-439c-8241-795e4f5b09a3 output_checkM/bins/bin.14/genes.faa # Current dir: /yoshitake/test/metagenome~metaWRAP # Date: Wed Jan 19 03:50:06 2022 # [ok]