pp metagenome~mapping-to-MAG-with-full-assembly input_1/ input_2/ input_3/publicareaall.fa
Checking the realpath of input files.
0 input_1/
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_1/PublicArea_bin.1.fa
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_1/PublicArea_bin.10.fa
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_1/PublicArea_bin.11.fa
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_1/PublicArea_bin.12.fa
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_1/PublicArea_bin.13.fa
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_1/PublicArea_bin.14.fa
0 input_2/
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_2/ERR5001997_1.fastq
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_2/ERR5001997_2.fastq
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_2/ERR5001999_1.fastq
1 /yoshitake/test/metagenome~mapping-to-MAG-with-full-assembly/input_2/ERR5001999_2.fastq
0 input_3/all.fa
c2997108/centos6:2-bwa-0.7.17-r1198-dirty c2997108/ubuntu20:R-2_gplots centos:7 centos:centos6 quay.io/biocontainers/samtools:1.9--h91753b0_3 quay.io/biocontainers/seqkit:0.12.1--0
using docker

R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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'citation()' on how to cite R or R packages in publications.

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> library("Cairo")
> library("gplots")
> 
> a=read.table("all.txt",sep="\t",row.names=1,header=T)
> 
> myh=min(10000,dim(a)[1]*12+500)
> if(myh*0.1<200){myh2=200}else{myh2=myh*0.1}
> CairoPNG(file="output.png",width=min(10000,dim(a)[2]*12+500),height=min(10000,dim(a)[1]*12+500));
> heatmap.2(as.matrix(log10(a+min(a[a>0]))),cexCol = 1, cexRow = 1, trace="none", margins=c(20,20), lhei=c(myh2, myh))
> dev.off()
null device 
          1 
> 
PID: 450555