/suikou/tool9/yoshitake/pp/pp 'mapping-illumina~parabricks'

NVIDIA Parabricks mapping tool. This tool needs NVIDIA GPU with over 16GB.

/suikou/tool9/yoshitake/pp/mapping-illumina~parabricks -c #opt_c# -m #opt_m# -p #opt_p# #input_1# #input_2# #input_3#

input_1:directory:paired-end FASTQ or single FASTQ(.gz) files:*.fastq,*.fq,*.fastq.gz,*.fq.gz
input_2::reference genome file:*.fa,*.fasta,*.fsa,*.fna,*.fa.gz,*.fasta.gz,*.fsa.gz,*.fna.gz
input_3:directory option:bwa index:*.amb,*.ann,*.bwt,*.pac,*.sa


opt_c:cpu threads:8
opt_m:memory limit (GB):32
opt_p:Parabricks pbrun options:--no-markdups