Draw UPGMA phylogenetic tree
>PAS9601
MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISVTGFDLNLGIQTSFDGTVKNSGAITIPSKLLSEIVNKLPNETPVSLEVDENSDNI
>PEQPAC1
MEIVCNQNEFNYAIQLVSKAVASRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFDATVNKSGAITIPSKLLSEIVNKLPSETPVSLDVDESSDNI
>PGP2
MEIICNQNELNNAIQLVSRAVASRPTHPILANILLTADQGTNKISLTGFDLNLGIQTSFDGTVENSGAITIPSKLLSEIVNKLPYETPVSINVEENSDNI
>PHNLC1
MEIVCQQSDLNIAIQLVNKAVASRPTHPILSNILFTADEVTNKISLTGFDLNLGIQTSFDANVDKSGAITIPSKILSEIVSKLPNESPVTLKVEEDTENI
>PHNLC2
MDIVCKQSELNNAIQLVSRAVASRPTHPILSNLLVTADEVTNKISLTGFDLNLGIQTSFDATVSQSGAITIPSRLLSEIVSKLPNESPVSLTVEELSDNI
graph~UPGMA-tree -c 8 -m 32 -d blosum62 -b 10 input_1/test.fa
pp $sname -c 8 -m 32 -d "blosum62" -b 10 input_1/test.fa
Checking the realpath of input files.
0 input_1/test.fa
c2997108/centos7:mamba-biopython centos:centos6 quay.io/biocontainers/mafft:7.505--hec16e2b_0
using docker
____________________________________ cluster.48.fa
|
| _ PPAC1
| _|
| | |, PNATL2A
| ______| ||
| | | | PNATL1A
| | |
| | |___ PMIT0801
| |
| | , PMIT0603
| | _________|
| _________| | | PMIT0602
| | | |
_| | | | , PMIT9313
| | | | |
| | | | | PMIT9303
| | | | ______|
| | | | | , PMIT0703
| | |____| | |
| | | | | PMIT0702
| | | ___| |
| | | | | | PMIT0701
| | | | |
| | | | | ____ PMIT9211
| | | | |_|
| | | | |____ PMIT0601
| | | |
|____________________________| |___| , PSS52
| | |
| | | PSS51
| | |
| | | PSS35
| | |
| | | PSS2
| | |
| |________| PSS120
| |
| | PLG
|
| ________ PHNLC2
| ,|
| ||________ PHNLC1
| |
| | , PMIT9515
|_____| ____|
| | |, PMED4
| | ||
| | | PEQPAC1
|____|
| ____ PUH18301
||
|| ___ PGP2
|||
|| , PMIT9215
|| __|
|| | | PMIT9202
| |
| | , PMIT9123
| | |
|_| __| PMIT9116
| | |
| | | PMIT9107
| |
| | , PMIT9401
|_| |
| __| PMIT9322
| | |
| _| | PMIT9321
|| |
|| | , PMIT9312
|| |__|
| | PMIT9311
|
|_ PSB
|
|, PMIT9314
||
, PMIT0604
|
, PMIT9301
|
|, PMIT9302
||
, PMIT9201
|
| PAS9601
bootstrap: 10
PID: 198413