c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_4-kegg_4 centos:centos6
using docker
+ set -o pipefail
++ echo input_1/sequence.fasta
++ grep '[.]gz$'
++ wc -l
++ true
+ '[' 0 = 1 ']'
+ docker run -v /tmp/171:/tmp/171 -w /tmp/171 -u root -i --rm c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_4-kegg_4 awk 'BEGIN{ORS=""} $0~"^>"{if(NR>1){print "\n+\n"; for(i=1;i<=len;i++){print "I"}; print "\n"; len=0}; print "@"substr($0,2)"\n"} $0!~"^>"{print $0; len+=length($0)} END{print "\n+\n"; for(i=1;i<=len;i++){print "I"}; print "\n"}' input_1/sequence.fasta
++ basename input_1/sequence.fasta
++ sed 's/[.]\(fa\|fasta\|fsa\|fna\)$/.fastq/'
+ post_processing
+ '[' 1 = 1 ']'
+ '[' 'docker run -v $PWD:$PWD -w $PWD -u root -i --rm ' = 'docker run -v $PWD:$PWD -w $PWD -u root -i --rm ' ']'
+ docker run -v /tmp/171:/tmp/171 -w /tmp/171 -u root -i --rm centos:centos6 chmod -R a=rXw .
+ echo 0
+ exit