# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- rrn16 - u1 - 635 1483 6326 5435 6346 5428 1491 - 7.8e-52 172.7 10.8 - rrn23 - u1 - 2449 2784 1999 1668 2020 1660 2810 - 1.1e-25 84.9 3.6 - rrn23 - u1 - 162 530 4739 4350 4759 4330 2810 - 3.7e-15 49.9 17.6 - rrn23 - u1 - 1782 2011 2671 2462 2691 2442 2810 - 3.6e-12 40.0 2.7 - rrn23 - u1 - 679 833 3979 3824 4000 3807 2810 - 2.1e-08 27.6 3.6 - rrn16 - u1 - 203 483 6922 6643 6937 6622 1491 - 0.0044 11.1 3.1 - rrn23 - u1 - 1066 1170 3567 3461 3586 3440 2810 - 1.2 1.8 3.2 - rrn23 - u1 - 1701 1748 2885 2838 2970 2818 2810 - 3.2 0.4 2.3 - psaI - u1 - 26 99 8265 8336 8253 8350 111 + 4 7.5 2.1 - rrn23 - u2 - 12 2579 2789 5322 2777 5322 2810 + 0 2026.6 55.6 - rrn16 - u2 - 7 1491 1006 2484 1001 2484 1491 + 0 1385.4 17.3 - trnI-GAU - u2 - 1 72 2549 2622 2549 2622 72 + 6.4e-20 70.5 0.4 - trnA-UGC - u2 - 1 73 2625 2697 2625 2697 73 + 8.9e-19 66.5 3.2 - trnT-UGU - u2 - 7 65 2631 2689 2625 2694 73 + 1.2e-07 30.9 2.7 - trnV-UAC - u2 - 2 71 2626 2692 2625 2697 76 + 7.4e-07 28.5 3.0 - trnfM-CAU - u2 - 8 65 2556 2613 2549 2620 74 + 0.00025 20.5 0.5 - trnT-GGU - u2 - 7 63 2631 2688 2629 2692 72 + 0.00027 20.5 2.3 - trnM-CAU - u2 - 8 62 2632 2686 2630 2691 73 + 0.0007 18.9 2.2 - trnR-CCG - u2 - 2 64 2550 2612 2549 2622 74 + 0.001 18.3 0.5 - trnD-GUC - u2 - 3 63 2551 2611 2549 2621 74 + 0.0013 17.8 0.7 - trnD-GUC - u2 - 6 59 2630 2682 2625 2693 74 + 0.0019 17.2 2.7 - trnV-UAC - u2 - 1 72 2548 2619 2548 2622 76 + 0.0023 17.3 0.5 - trnM-CAU - u2 - 7 63 2555 2612 2551 2618 73 + 0.004 16.4 0.3 - trnV-GAC - u2 - 2 69 2626 2694 2625 2697 72 + 0.0063 16.1 2.9 - trnA-UGC - u2 - 8 62 2556 2611 2549 2614 73 + 0.0076 15.5 0.6 - trnF-GAA - u2 - 5 26 2629 2650 2624 2670 73 + 0.014 15.4 0.2 - trnT-GGU - u2 - 4 62 2552 2612 2549 2621 72 + 0.022 14.4 0.2 - trnN-GUU - u2 - 7 61 2555 2611 2552 2628 72 + 0.071 12.7 0.1 - trnW-CCA - u2 - 3 63 2551 2611 2549 2619 74 + 0.086 12.4 0.4 - trnP-GGG - u2 - 9 63 2557 2611 2549 2613 74 + 0.2 11.2 0.5 - trnF-GAA - u2 - 8 62 2556 2611 2549 2619 73 + 0.54 10.4 0.5 - trnR-CCG - u2 - 6 64 2630 2687 2625 2697 74 + 1.2 8.5 2.3 - trnR-ACG - u2 - 6 63 2630 2686 2625 2698 74 + 1.9 8.1 2.5 - trnP-UGG - u2 - 8 64 2556 2612 2548 2616 74 + 2.6 7.6 0.9 - trnT-UGU - u2 - 7 62 2555 2611 2551 2621 73 + 4 6.7 0.3 - trnI-GAU - u2 - 8 27 2632 2652 2626 2675 72 + 4 7.0 0.6 - trnR-ACG - u2 - 2 64 2550 2612 2549 2622 74 + 4.1 7.1 0.5 - psaA - u3 - 25 2234 17713 19919 17693 19938 2253 + 0 1529.7 118.4 - psaB - u3 - 1 2205 20016 22217 20016 22217 2205 + 0 1509.6 111.7 - psbB - u3 - 2 1520 48321 46803 48322 46796 1527 - 0 1080.8 60.4 - psbC - u3 - 1 1419 35614 37026 35614 37029 1422 + 2.5e-299 995.8 53.4 - atpB - u3 - 50 1460 23327 24725 23315 24746 1497 + 2.7e-293 976.1 75.9 - atpA - u3 - 2 1492 50064 48574 50065 48553 1524 - 2.9e-261 870.0 93.8 - psbD - u3 - 1 1062 34611 35666 34611 35666 1062 + 1.7e-250 833.9 41.0 - rpoB - u3 - 909 3155 14577 12352 14597 12332 3213 - 4.6e-198 659.0 160.3 - petB - u3 - 2 645 3853 3210 3854 3207 648 - 6e-135 451.8 38.8 - psaB - u3 - 60 2175 17823 19911 17795 19929 2205 + 5.9e-123 410.5 106.0 - psaA - u3 - 115 2110 20058 22059 20036 22080 2253 + 2.7e-110 368.3 98.1 - rpoC1 - u3 - 779 1628 10951 10108 10971 10098 2044 - 1e-101 340.1 64.0 - atpI - u3 - 50 731 52839 52155 52859 52151 744 - 3e-96 323.7 52.2 - rbcL - u3 - 59 654 55568 56163 55524 56182 673 + 2.6e-85 287.7 20.9 - petD - u3 - 3 478 3152 2677 3154 2664 483 - 1.2e-82 279.1 28.4 - petA - u3 - 102 962 26151 27008 26131 27009 963 + 2.2e-68 231.1 71.8 - rpoC2 - u3 - 312 1046 9488 8769 9508 8749 4167 - 1.5e-59 198.6 51.2 - ycf3 - u3 - 21 500 22614 23126 22601 23136 507 + 5.4e-58 197.7 32.2 - atpH - u3 - 2 239 52084 51847 52085 51842 246 - 4.3e-52 178.4 12.3 - rps2 - u3 - 42 651 5409 4800 5429 4780 711 - 1.1e-46 160.1 52.7 - psbE - u3 - 2 234 42273 42508 42272 42526 252 + 1.7e-33 117.7 13.1 - rpoC1 - u3 - 40 381 12158 11826 12178 11806 2044 - 5.2e-28 95.6 25.8 - rpoC2 - u3 - 3806 3983 5787 5610 5808 5590 4167 - 4.5e-26 87.5 14.3 - rps14 - u3 - 1 302 60922 60621 60922 60620 303 - 3e-23 84.0 34.0 - rpl20 - u3 - 3 313 63943 64247 63941 64267 402 + 1.6e-20 74.5 18.6 - trnG-UCC - u3 - 1 71 42146 42216 42146 42216 71 + 2.7e-20 75.4 0.7 - trnK-UUU - u3 - 1 72 37238 37167 37238 37167 72 - 3.4e-20 74.8 1.2 - psbH - u3 - 47 191 46105 45961 46118 45941 222 - 1.2e-19 72.6 18.8 - psbA - u3 - 319 872 34923 35467 34898 35504 1062 + 1.5e-19 69.2 27.4 - trnD-GUC - u3 - 1 74 58626 58699 58626 58699 74 + 1.6e-19 72.2 2.5 - atpE - u3 - 5 398 24760 25153 24756 25157 402 + 1.8e-19 71.1 23.2 - ycf4 - u3 - 41 415 41585 41959 41564 41980 555 + 2e-18 66.9 40.4 - psbK - u3 - 58 184 34056 33930 34076 33928 186 - 8.2e-17 63.2 14.5 - trnF-GAA - u3 - 4 73 30076 30145 30073 30145 73 + 2.3e-16 63.1 1.7 - psbF - u3 - 16 120 42574 42678 42554 42678 120 + 7.2e-16 60.6 9.0 - trnY-GUA - u3 - 1 84 57854 57935 57854 57935 84 + 4.6e-15 58.5 2.0 - trnfM-CAU - u3 - 1 73 4617 4545 4617 4544 74 - 5.1e-15 58.2 1.1 - trnS-GCU - u3 - 1 87 58479 58564 58479 58565 88 + 9.6e-15 57.1 1.6 - psbL - u3 - 2 116 42709 42823 42708 42824 117 + 1.4e-14 56.6 15.7 - rpl33 - u3 - 5 200 17102 17294 17097 17309 213 + 1.9e-14 55.6 21.6 - trnS-CGA - u3 - 2 91 42146 42216 42145 42217 92 + 1.6e-13 53.6 0.8 - trnE-UUC - u3 - 1 73 38013 38085 38013 38085 73 + 8.5e-13 50.9 1.6 - trnP-GGG - u3 - 1 74 64921 64994 64921 64994 74 + 2.6e-12 49.5 1.0 - trnP-GGG - u3 - 1 74 722 649 722 649 74 - 2.6e-12 49.5 1.0 - rps18 - u3 - 147 298 17349 17500 17341 17520 403 + 5e-12 46.3 13.5 - psbN - u3 - 1 130 46485 46614 46485 46616 132 + 1.1e-11 47.0 8.9 - trnW-CCA - u3 - 1 73 31608 31679 31608 31680 74 + 1.6e-11 47.1 0.6 - trnR-CCG - u3 - 6 71 28469 28405 28473 28402 74 - 1.8e-10 43.5 0.7 - psbJ - u3 - 12 120 42857 42965 42847 42968 123 + 6.9e-09 38.1 17.9 - psbI - u3 - 2 107 38331 38226 38332 38213 111 - 1.8e-08 37.0 20.8 - petG - u3 - 2 106 33784 33680 33785 33666 114 - 1.2e-07 34.6 14.0 - trnP-UGG - u3 - 2 72 64922 64992 64921 64994 74 + 1.4e-07 34.4 1.1 - trnP-UGG - u3 - 2 72 721 651 722 649 74 - 1.4e-07 34.4 1.1 - ycf12 - u3 - 30 126 37461 37557 37441 37577 192 + 3.3e-07 31.0 11.7 - petN - u3 - 1 84 45832 45749 45832 45743 90 - 3e-06 29.9 11.6 - trnW-CCA - u3 - 5 70 58378 58444 58375 58446 74 + 3.6e-06 29.9 0.6 - ycf66 - u3 - 106 205 29413 29314 29436 29293 477 - 6.1e-06 25.6 14.1 - trnR-CCG - u3 - 7 73 64927 64992 64922 64993 74 + 8e-06 28.6 1.0 - trnR-CCG - u3 - 7 73 716 651 721 650 74 - 8e-06 28.6 1.0 - trnS-UGA - u3 - 2 93 4003 3917 4004 3917 93 - 1e-05 28.1 1.2 - trnS-GGA - u3 - 1 86 58479 58564 58479 58565 87 + 1.6e-05 27.5 1.4 - trnS-GCU - u3 - 2 86 4003 3919 4004 3917 88 - 1.8e-05 27.4 1.2 - trnS-UGA - u3 - 1 93 58479 58565 58479 58565 93 + 2.7e-05 26.8 1.4 - psaM - u3 - 48 156 60488 60391 60508 60382 165 - 2.8e-05 25.9 14.2 - trnR-UCU - u3 - 3 68 57641 57575 57643 57571 72 - 2.9e-05 26.9 0.4 - trnR-CCG - u3 - 2 68 58376 58441 58375 58447 74 + 5.4e-05 25.9 0.6 - trnI-GAU - u3 - 1 71 57727 57657 57727 57656 72 - 6.1e-05 26.0 0.5 - psaJ - u3 - 13 109 45384 45480 45372 45497 135 + 6.1e-05 25.4 13.7 - trnR-ACG - u3 - 3 70 28472 28406 28473 28402 74 - 7e-05 25.8 0.6 - trnN-GUU - u3 - 3 64 58377 58439 58376 58444 72 + 7.5e-05 25.7 0.5 - trnN-GUU - u3 - 8 63 37231 37176 37235 37172 72 - 8.1e-05 25.6 1.7 - trnI-GAU - u3 - 8 60 37913 37965 37908 37974 72 + 0.00011 25.1 0.9 - trnS-GGA - u3 - 2 85 4003 3919 4004 3917 87 - 0.00016 24.3 1.3 - trnG-GCC - u3 - 1 70 42146 42215 42146 42216 71 + 0.00022 24.3 0.5 - trnP-GGG - u3 - 19 66 57711 57664 57727 57656 74 - 0.00027 23.9 0.2 - trnG-UCC - u3 - 1 71 37906 37977 37906 37977 71 + 0.00035 23.8 2.7 - trnA-UGC - u3 - 5 61 58630 58687 58626 58706 73 + 0.00045 22.9 1.4 - trnR-ACG - u3 - 6 64 64926 64984 64922 64992 74 + 0.00059 22.9 1.3 - trnR-ACG - u3 - 6 64 717 659 721 651 74 - 0.00059 22.9 1.3 - psbT - u3 - 1 85 46742 46658 46742 46637 108 - 0.00063 22.5 10.0 - trnR-ACG - u3 - 4 67 58378 58440 58375 58447 74 + 0.00094 22.2 0.4 - trnM-CAU - u3 - 8 63 58382 58437 58377 58444 73 + 0.001 21.8 0.5 - trnP-GGG - u3 - 3 70 37908 37973 37907 37975 74 + 0.001 22.0 1.9 - trnT-UGU - u3 - 8 70 22410 22471 22403 22474 73 + 0.0011 21.7 0.9 - trnT-UGU - u3 - 8 62 58382 58436 58376 58447 73 + 0.0011 21.6 0.4 - trnV-UAC - u3 - 2 73 64922 64991 64921 64994 76 + 0.0012 21.7 1.2 - trnV-UAC - u3 - 2 73 721 652 722 649 76 - 0.0012 21.7 1.2 - trnT-GGU - u3 - 8 61 22410 22463 22403 22468 72 + 0.0014 21.7 1.5 - trnT-GGU - u3 - 7 61 57721 57667 57724 57662 72 - 0.0016 21.5 0.3 - trnP-UGG - u3 - 10 69 57718 57661 57727 57656 74 - 0.0017 21.2 0.3 - trnR-CCG - u3 - 6 68 22408 22468 22405 22473 74 + 0.0017 21.1 1.0 - trnA-UGC - u3 - 7 66 30079 30138 30077 30156 73 + 0.0021 20.8 1.1 - trnF-GAA - u3 - 8 61 58382 58435 58378 58439 73 + 0.0025 21.3 0.5 - trnT-UGU - u3 - 8 62 28467 28413 28472 28409 73 - 0.0028 20.4 0.6 - trnW-CCA - u3 - 8 66 64928 64986 64924 64988 74 + 0.003 20.5 0.9 - trnW-CCA - u3 - 8 66 715 657 719 655 74 - 0.003 20.5 0.9 - trnV-GAC - u3 - 7 57 57721 57671 57727 57655 72 - 0.0032 20.5 0.3 - trnV-GAC - u3 - 6 57 37911 37962 37907 37975 72 + 0.0033 20.5 0.9 - trnP-GGG - u3 - 2 63 4614 4555 4616 4547 74 - 0.0035 20.3 0.9 - trnT-UGU - u3 - 1 64 30073 30136 30073 30145 73 + 0.0042 19.8 1.2 - trnS-UGA - u3 - 8 82 28012 27946 28015 27942 93 - 0.0042 19.7 0.0 - trnA-UGC - u3 - 5 61 37910 37965 37906 37981 73 + 0.0058 19.4 1.0 - trnP-UGG - u3 - 7 68 4611 4550 4616 4544 74 - 0.006 19.5 0.4 - trnS-GCU - u3 - 8 82 57861 57929 57846 57935 88 + 0.0091 18.7 0.7 - trnR-CCG - u3 - 8 65 31615 31671 31608 31678 74 + 0.014 18.2 0.5 - trnW-CCA - u3 - 8 63 4610 4555 4615 4550 74 - 0.015 18.3 0.2 - trnI-GAU - u3 - 8 61 58382 58436 58375 58443 72 + 0.016 18.2 0.7 - trnR-CCG - u3 - 2 72 57726 57658 57727 57656 74 - 0.018 17.9 0.4 - trnA-UGC - u3 - 2 71 64922 64992 64921 64994 73 + 0.02 17.6 1.3 - trnA-UGC - u3 - 2 71 721 651 722 649 73 - 0.02 17.6 1.3 - trnR-CCG - u3 - 1 73 37238 37168 37238 37167 74 - 0.021 17.6 1.3 - trnfM-CAU - u3 - 30 67 57700 57663 57717 57656 74 - 0.025 17.6 0.1 - trnfM-CAU - u3 - 13 64 31620 31670 31614 31680 74 + 0.025 17.6 0.7 - trnA-UGC - u3 - 5 69 28470 28400 28473 28398 73 - 0.026 17.3 0.7 - trnP-GGG - u3 - 17 64 31623 31670 31616 31672 74 + 0.027 17.5 0.7 - trnR-CCG - u3 - 8 62 37913 37965 37908 37977 74 + 0.03 17.2 0.8 - trnM-CAU - u3 - 4 66 57724 57663 57726 57659 73 - 0.036 16.9 0.7 - trnI-CAU - u3 - 7 69 58381 58442 58376 58447 74 + 0.036 16.9 0.5 - trnA-UGC - u3 - 8 62 31615 31669 31608 31687 73 + 0.053 16.3 0.4 - trnY-GUA - u3 - 8 75 28012 27944 28018 27938 84 - 0.058 16.5 0.2 - trnI-CAU - u3 - 1 40 28019 27979 28019 27958 74 - 0.062 16.2 0.3 - trnH-GUG - u3 - 12 64 57864 57924 57855 57931 75 + 0.084 15.8 1.3 - trnM-CAU - u3 - 4 63 4626 4554 4628 4546 73 - 0.1 15.4 0.0 - trnH-GUG - u3 - 6 69 28470 28408 28474 28404 75 - 0.12 15.3 0.6 - trnQ-UUG - u3 - 5 65 22407 22467 22405 22472 72 + 0.13 15.0 1.3 - trnQ-UUG - u3 - 16 70 64938 64992 64922 64994 72 + 0.13 15.0 0.9 - trnQ-UUG - u3 - 16 70 705 651 721 649 72 - 0.13 15.0 0.9 - trnL-UAA - u3 - 2 83 4003 3919 4004 3917 85 - 0.15 15.0 1.3 - trnN-GUU - u3 - 8 65 64928 64987 64925 64989 72 + 0.17 15.0 1.0 - trnN-GUU - u3 - 8 65 715 656 718 654 72 - 0.17 15.0 1.0 - trnL-UAA - u3 - 15 79 22416 22468 22404 22473 85 + 0.21 14.5 0.7 - trnC-GCA - u3 - 8 47 28012 27971 28018 27951 71 - 0.21 14.7 0.3 - trnS-GCU - u3 - 8 76 28012 27947 28015 27937 88 - 0.21 14.3 0.1 - trnR-CCG - u3 - 8 63 30080 30134 30077 30144 74 + 0.22 14.4 0.9 - trnP-GGG - u3 - 45 67 58418 58440 58411 58442 74 + 0.22 14.5 0.2 - trnR-UCU - u3 - 14 63 58388 58438 58378 58446 72 + 0.23 14.4 0.5 - trnD-GUC - u3 - 8 66 37913 37969 37908 37975 74 + 0.26 13.9 1.2 - trnP-GGG - u3 - 19 70 28457 28406 28470 28402 74 - 0.27 14.2 0.6 - trnT-GGU - u3 - 6 64 58380 58439 58375 58446 72 + 0.32 14.1 0.6 - rpoB - u3 - 31 185 16454 16300 16474 16280 3213 - 0.32 5.8 27.4 - trnC-GCA - u3 - 8 60 57861 57924 57856 57929 71 + 0.32 14.1 0.9 - trnR-UCG - u3 - 47 68 3947 3926 3967 3922 77 - 0.33 13.8 0.0 - trnR-CCG - u3 - 5 68 4600 4550 4620 4545 74 - 0.33 13.8 0.0 - psbB - u3 - 4 134 35701 35831 35698 35848 1527 + 0.35 7.3 5.8 - trnN-GUU - u3 - 8 62 57720 57666 57725 57661 72 - 0.39 13.8 0.2 - trnC-GCA - u3 - 16 63 30089 30137 30075 30144 71 + 0.4 13.8 1.0 - trnfM-CAU - u3 - 30 63 58403 58436 58378 58446 74 + 0.4 13.7 0.3 - trnK-UUU - u3 - 1 69 57727 57659 57727 57656 72 - 0.47 13.5 0.4 - trnR-UCG - u3 - 8 70 22410 22467 22404 22476 77 + 0.51 13.2 0.6 - trnA-UGC - u3 - 7 65 22409 22466 22405 22474 73 + 0.51 13.1 1.1 - trnR-UCG - u3 - 8 70 28467 28409 28470 28403 77 - 0.58 13.0 0.6 - trnS-GGA - u3 - 8 81 57861 57929 57853 57934 87 + 0.64 12.8 1.2 - psbZ - u3 - 43 109 37633 37698 37613 37719 189 + 0.77 11.5 5.8 - trnG-UCC - u3 - 8 60 31615 31669 31608 31679 71 + 1 12.6 0.2 - trnN-GUU - u3 - 8 61 30080 30134 30074 30145 72 + 1.1 12.3 0.9 - trnG-UCC - u3 - 28 62 57614 57580 57635 57575 71 - 1.1 12.5 0.9 - trnR-ACG - u3 - 6 67 22408 22467 22406 22471 74 + 1.4 12.0 0.8 - trnV-UAC - u3 - 7 66 30079 30135 30076 30141 76 + 1.4 11.9 0.6 - trnW-CCA - u3 - 10 64 57718 57666 57726 57661 74 - 1.5 11.9 0.1 - trnP-UGG - u3 - 3 72 28472 28404 28474 28402 74 - 1.5 11.9 0.7 - trnN-GUU - u3 - 7 61 22409 22463 22406 22467 72 + 1.5 11.9 1.3 - trnG-GCC - u3 - 6 70 37911 37976 37906 37981 71 + 1.6 12.0 1.8 - trnS-CGA - u3 - 2 91 37906 37977 37905 37978 92 + 1.6 11.9 2.4 - trnI-CAU - u3 - 50 69 57595 57576 57614 57573 74 - 1.6 11.7 0.7 - trnQ-UUG - u3 - 9 65 28466 28409 28471 28404 72 - 1.7 11.4 0.6 - trnS-CGA - u3 - 48 83 57614 57579 57634 57573 92 - 1.8 11.7 0.9 - trnN-GUU - u3 - 8 25 37913 37930 37902 37951 72 + 1.9 11.6 0.5 - trnE-UUC - u3 - 4 69 57640 57575 57643 57571 73 - 1.9 11.3 0.5 - trnI-CAU - u3 - 48 67 675 656 683 653 74 - 2.4 11.1 0.3 - trnI-CAU - u3 - 48 67 64968 64987 64960 64990 74 + 2.4 11.1 0.3 - trnA-UGC - u3 - 3 62 57725 57667 57727 57656 73 - 2.5 10.9 0.4 - trnR-UCG - u3 - 2 68 37237 37176 37238 37158 77 - 2.5 11.0 1.3 - trnF-GAA - u3 - 7 61 22409 22462 22403 22480 73 + 3.2 11.4 1.0 - trnS-GCU - u3 - 11 79 22413 22465 22403 22471 88 + 3.5 10.4 0.9 - trnK-UUU - u3 - 8 62 22410 22464 22403 22467 72 + 3.6 10.7 1.1 - trnV-GAC - u3 - 2 70 64922 64992 64921 64994 72 + 3.8 10.7 0.8 - trnV-GAC - u3 - 2 70 721 651 722 649 72 - 3.8 10.7 0.8 - ycf12 - u3 - 76 181 20346 20452 20344 20463 192 + 3.8 8.0 8.6 - trnD-GUC - u3 - 6 68 22408 22468 22405 22472 74 + 4.2 10.0 1.1 - trnR-CCG - u3 - 49 66 58540 58557 58522 58565 74 + 4.2 10.3 0.3 - trnV-UAC - u3 - 6 63 58631 58686 58626 58698 76 + 4.2 10.4 1.4 - trnP-UGG - u3 - 15 64 31622 31670 31613 31674 74 + 4.5 10.3 0.6 - trnN-GUU - u3 - 8 65 31615 31673 31609 31680 72 + 4.7 10.3 0.4 - trnfM-CAU - u3 - 10 66 37913 37969 37906 37978 74 + 5.5 10.1 1.5 - trnP-GGG - u3 - 18 69 22418 22469 22405 22471 74 + 5.7 10.0 0.8 - trnR-UCG - u3 - 54 68 58542 58556 58521 58559 77 + 7.1 9.6 0.0 - trnP-UGG - u3 - 8 66 30080 30137 30077 30146 74 + 7.4 9.6 1.2 - trnT-GGU - u3 - 4 64 30076 30137 30073 30145 72 + 8.2 9.6 1.4 - trnN-GUU - u3 - 48 68 57595 57575 57601 57574 72 - 9.5 9.4 0.9 - trnH-GUG - u3 - 8 68 28013 27942 28019 27936 75 - 9.5 9.2 0.5 - psbA - u4 - 1 1061 8865 9946 8865 9947 1062 + 2.3e-272 905.7 30.0 - tufA - u4 - 1 1218 17880 16666 17880 16647 1233 - 1.2e-172 575.9 57.0 - ccsA - u4 - 167 944 11241 10482 11262 10465 966 - 1.4e-83 280.9 72.7 - rrn23 - u4 - 2534 2808 2 276 1 278 2810 + 6.5e-83 276.9 4.3 - rrn23 - u4 - 2534 2808 41644 41370 41645 41368 2810 - 6.5e-83 276.9 4.3 - rpl2 - u4 - 8 817 30375 29560 30382 29550 825 - 4.2e-72 242.9 46.5 - rps12 - u4 - 1 371 18933 18563 18933 18562 372 - 2.5e-59 201.7 17.9 - psaC - u4 - 1 244 10172 10415 10172 10417 246 + 3.8e-57 194.6 11.9 - rpl14 - u4 - 1 369 26722 26357 26722 26357 369 - 1.3e-55 189.6 24.4 - rpl16 - u4 - 2 399 27700 27303 27701 27296 408 - 5.7e-54 184.2 10.7 - rps11 - u4 - 82 412 21410 21080 21430 21075 417 - 1.5e-38 133.3 13.9 - rps4 - u4 - 1 493 39124 39628 39124 39656 606 + 3e-34 118.8 37.2 - rps19 - u4 - 141 403 29512 29250 29532 29230 436 - 4.2e-32 111.4 27.4 - rpl22 - u4 - 79 399 28752 28432 28772 28408 528 - 2.2e-31 109.2 32.6 - rps7 - u4 - 1 464 18429 17966 18429 17962 468 - 1.7e-25 90.1 39.0 - rps3 - u4 - 2 645 28379 27757 28380 27745 657 - 6.2e-25 87.9 59.5 - rps8 - u4 - 4 405 25353 24955 25356 24955 405 - 1.3e-21 77.7 48.4 - trnN-GUU - u4 - 1 72 12055 12126 12055 12126 72 + 2.1e-20 74.9 0.6 - trnR-ACG - u4 - 1 74 35915 35988 35915 35988 74 + 3e-20 74.4 1.5 - psbD - u4 - 417 882 9281 9755 9261 9775 1062 + 3.6e-17 60.7 17.6 - trnR-CCG - u4 - 1 74 35915 35988 35915 35988 74 + 7.4e-17 63.3 1.5 - trnC-GCA - u4 - 1 71 15886 15956 15886 15956 71 + 9.5e-17 63.2 1.1 - rpl21 - u4 - 7 308 2404 2687 2398 2707 357 + 8.4e-16 58.3 39.1 - trnL-UAA - u4 - 1 85 16030 16116 16030 16116 85 + 2.9e-15 58.3 1.1 - rpoA - u4 - 118 679 20939 20369 20959 20349 1014 - 1.8e-12 45.4 49.6 - rrn4.5 - u4 - 2 102 292 382 291 383 103 + 1.1e-11 46.8 3.4 - rrn4.5 - u4 - 2 102 41354 41264 41355 41263 103 - 1.1e-11 46.8 3.4 - trnQ-UUG - u4 - 1 72 36019 36090 36019 36090 72 + 5.6e-11 44.4 2.3 - rpl36 - u4 - 2 113 22018 21907 22019 21906 114 - 1.8e-10 42.8 14.7 - rrn5 - u4 - 4 117 472 582 461 586 121 + 3.9e-09 38.2 0.1 - rrn5 - u4 - 4 117 41174 41064 41185 41060 121 - 3.9e-09 38.2 0.1 - trnH-GUG - u4 - 1 75 38989 39062 38989 39062 75 + 8.7e-09 37.6 8.0 - rpl32 - u4 - 86 204 1017 1134 998 1156 278 + 4.4e-08 33.1 19.5 - trnQ-UUG - u4 - 3 61 38992 39051 38990 39061 72 + 6.1e-08 34.7 6.4 - trnR-UCG - u4 - 7 70 35921 35981 35915 35988 77 + 7.2e-07 31.3 1.0 - trnL-CAA - u4 - 8 72 16037 16107 16033 16117 81 + 1.8e-06 30.2 0.5 - trnF-GAA - u4 - 4 66 15889 15949 15886 15957 73 + 7.3e-06 28.8 0.3 - trnL-UAA - u4 - 3 84 1247 1325 1245 1326 85 + 1.1e-05 27.6 2.3 - trnH-GUG - u4 - 5 66 36022 36081 36020 36087 75 + 5.8e-05 25.3 1.7 - trnK-UUU - u4 - 8 61 12062 12115 12058 12125 72 + 5.9e-05 25.4 0.7 - trnH-GUG - u4 - 7 60 15891 15941 15886 15954 75 + 0.00023 23.4 0.0 - trnR-CCG - u4 - 5 64 12059 12116 12057 12122 74 + 0.00054 22.1 0.4 - trnQ-UUG - u4 - 4 60 15889 15944 15886 15955 72 + 0.0029 19.7 0.0 - trnI-GAU - u4 - 7 61 12061 12115 12058 12123 72 + 0.0066 18.8 0.6 - rps16 - u4 - 2 218 39834 40050 39833 40075 276 + 0.013 15.8 20.4 - trnW-CCA - u4 - 9 66 12063 12118 12056 12126 74 + 0.016 17.6 0.0 - trnR-ACG - u4 - 5 68 12059 12120 12056 12123 74 + 0.023 17.2 0.3 - trnT-GGU - u4 - 8 69 12062 12123 12056 12125 72 + 0.024 17.1 0.5 - trnN-GUU - u4 - 7 61 35921 35977 35918 35985 72 + 0.11 14.9 0.8 - trnQ-UUG - u4 - 8 65 12062 12119 12060 12121 72 + 0.26 13.4 0.4 - trnN-GUU - u4 - 13 63 36031 36081 36024 36084 72 + 0.36 13.3 0.8 - trnL-UAG - u4 - 4 38 1248 1282 1245 1302 80 + 0.4 13.4 1.5 - trnL-UAG - u4 - 6 68 16035 16104 16030 16107 80 + 0.42 13.3 1.8 - trnfM-CAU - u4 - 12 67 12066 12119 12058 12124 74 + 0.59 12.5 0.4 - trnC-GCA - u4 - 8 60 36026 36079 36020 36098 71 + 1 11.9 1.0 - trnI-CAU - u4 - 48 67 12100 12119 12080 12125 74 + 1 11.6 0.0 - trnP-GGG - u4 - 46 66 12098 12118 12078 12120 74 + 1.1 11.6 0.2 - trnP-GGG - u4 - 48 72 36064 36088 36062 36089 74 + 1.6 11.2 1.3 - trnS-GCU - u4 - 9 83 35923 35982 35917 35987 88 + 2.1 10.5 0.7 - trnA-UGC - u4 - 6 63 35920 35978 35901 35988 73 + 2.6 10.2 0.6 - rpl23 - u4 - 11 175 30677 30513 30687 30493 282 - 4.6 7.5 31.4 - trnW-CCA - u4 - 3 63 35917 35977 35915 35982 74 + 6.3 9.3 1.2 - trnR-UCU - u4 - 43 63 12096 12117 12090 12124 72 + 6.9 9.0 0.0 - # # Program: nhmmscan # Version: 3.4 (Aug 2023) # Pipeline mode: SCAN # Query file: ./tmp_XXXXtZErgV/tmpXXXXg5tdft.fa # Target file: /usr/local/oatkdb/embryophyta_pltd.fam # Option settings: nhmmscan -o /dev/null --tblout ./tmp_XXXXtZErgV/tmpXXXXgQAtrv.out --noali --cpu 1 /usr/local/oatkdb/embryophyta_pltd.fam ./tmp_XXXXtZErgV/tmpXXXXg5tdft.fa # Current dir: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/assemble~oatk # Date: Wed May 14 17:06:28 2025 # [ok] # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- # # Program: nhmmscan # Version: 3.4 (Aug 2023) # Pipeline mode: SCAN # Query file: ./tmp_XXXXtZErgV/tmpXXXXi3umLO.fa # Target file: /usr/local/oatkdb/embryophyta_pltd.fam # Option settings: nhmmscan -o /dev/null --tblout ./tmp_XXXXtZErgV/tmpXXXX0ui1OR.out --noali --cpu 1 /usr/local/oatkdb/embryophyta_pltd.fam ./tmp_XXXXtZErgV/tmpXXXXi3umLO.fa # Current dir: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/assemble~oatk # Date: Wed May 14 17:05:58 2025 # [ok]