# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- rrn12 - u1 - 604 1443 6326 5423 6347 5397 1498 - 2.3e-27 90.1 11.2 - rrn16 - u1 - 1983 2242 1999 1745 2019 1723 2548 - 2.5e-19 61.2 5.0 - rrn16 - u1 - 1374 1584 2681 2460 2704 2440 2548 - 1.8e-08 25.2 2.8 - rrn16 - u1 - 281 495 4757 4396 4777 4368 2548 - 0.00034 11.0 15.1 - rrn12 - u1 - 453 480 6671 6644 6671 6639 1498 - 0.0053 9.3 1.0 - rrn12 - u2 - 32 1432 1001 2477 981 2500 1498 + 1.1e-135 448.2 16.8 - rrn16 - u2 - 280 2113 2910 5320 2885 5322 2548 + 2e-134 442.2 36.7 - rrn16 - u2 - 1144 1941 1458 2183 1425 2203 2548 + 1.8e-22 70.8 6.7 - trnA-UGC - u2 - 1 72 2625 2697 2625 2697 72 + 7.8e-08 30.6 3.1 - trnV-UAC - u2 - 3 64 2627 2689 2625 2697 72 + 2.6e-07 28.1 3.1 - trnI-GAU - u2 - 7 71 2555 2621 2549 2622 72 + 1.1e-06 26.5 0.5 - trnF-GAA - u2 - 7 63 2555 2611 2551 2619 74 + 2.2e-05 22.3 0.5 - trnV-UAC - u2 - 2 62 2550 2612 2549 2622 72 + 0.00054 17.5 0.5 - trnN-GUU - u2 - 3 36 3646 3674 3636 3679 71 + 0.016 12.9 1.9 - trnT-UGU - u2 - 6 65 2554 2615 2552 2618 72 + 0.052 11.7 0.6 - trnH-GUG - u2 - 6 31 2629 2654 2625 2673 74 + 0.087 11.1 0.3 - trnN-GUU - u2 - 6 26 2630 2651 2628 2654 71 + 0.13 10.0 0.3 - trnF-GAA - u2 - 6 28 2630 2651 2628 2657 74 + 0.17 9.9 0.1 - trnT-UGU - u2 - 7 28 2631 2652 2628 2671 72 + 0.34 9.2 0.0 - trnP-UGG - u2 - 6 35 2630 2659 2626 2659 73 + 0.66 7.7 0.7 - trnK-UUU - u2 - 7 65 2555 2614 2549 2622 73 + 1 6.4 0.4 - trnE-UUC - u2 - 47 68 2597 2618 2588 2622 72 + 3.7 5.4 0.0 - trnE-UUC - u2 - 31 64 2655 2689 2637 2691 72 + 8.9 4.2 2.5 - trnK-UUU - u2 - 2 27 2626 2651 2625 2671 73 + 9.6 3.2 1.1 - cytb - u3 - 147 958 3728 2785 3749 2415 1347 - 5.1e-28 94.2 87.3 - trnV-UAC - u3 - 2 71 57726 57657 57727 57656 72 - 2.4e-12 47.8 0.6 - trnF-GAA - u3 - 1 74 30073 30145 30073 30145 74 + 5.3e-09 37.4 1.8 - trnV-UAC - u3 - 8 64 22410 22466 22406 22470 72 + 1.6e-08 35.5 1.0 - trnT-UGU - u3 - 5 67 57723 57661 57724 57660 72 - 8.2e-08 33.8 1.1 - trnS-UGA - u3 - 4 79 4001 3922 4004 3918 84 - 1e-07 32.9 1.1 - trnK-UUU - u3 - 8 65 37231 37175 37238 37167 73 - 1.2e-07 32.0 1.2 - trnG-UCC - u3 - 2 66 42147 42211 42146 42215 71 + 1.7e-07 32.4 0.2 - trnW-UCA - u3 - 4 67 42149 42212 42148 42215 71 + 2.5e-07 31.9 0.1 - trnP-UGG - u3 - 2 73 64922 64994 64906 64994 73 + 3.1e-07 31.4 0.4 - trnP-UGG - u3 - 2 73 721 649 737 649 73 - 3.1e-07 31.4 0.4 - trnD-GUC - u3 - 5 72 58630 58698 58626 58699 73 + 1.5e-06 29.9 1.9 - trnK-UUU - u3 - 6 67 22408 22468 22406 22469 73 + 2.5e-06 27.9 1.3 - trnT-UGU - u3 - 8 61 22410 22463 22403 22467 72 + 4e-06 28.4 1.3 - trnA-UGC - u3 - 3 63 42148 42207 42148 42212 72 + 7.2e-06 27.8 0.0 - trnE-UUC - u3 - 7 63 42152 42207 42151 42210 72 + 9e-06 26.9 0.3 - trnV-UAC - u3 - 6 63 42151 42207 42148 42213 72 + 9.9e-06 26.6 0.0 - trnN-GUU - u3 - 3 68 22405 22471 22403 22474 71 + 1.8e-05 25.8 0.9 - trnM-CAU - u3 - 2 69 58376 58444 58375 58447 72 + 2.1e-05 24.8 0.9 - trnS-UGA - u3 - 1 82 58479 58563 58479 58565 84 + 4.7e-05 24.3 1.4 - trnE-UUC - u3 - 5 71 38017 38084 38013 38085 72 + 5.3e-05 24.4 0.8 - trnF-GAA - u3 - 4 71 58378 58444 58375 58447 74 + 8.6e-05 23.9 0.6 - trnE-UUC - u3 - 3 72 57641 57571 57643 57571 72 - 9e-05 23.7 0.5 - trnR-UCU - u3 - 8 60 22410 22463 22405 22467 71 + 9.2e-05 23.4 1.4 - trnR-UCU - u3 - 13 62 57631 57580 57639 57575 71 - 9.4e-05 23.3 0.9 - trnW-CCA - u3 - 4 68 42149 42212 42148 42215 72 + 0.00013 23.4 0.1 - trnW-CCA - u3 - 8 62 31615 31670 31613 31689 72 + 0.00015 23.3 0.7 - trnV-UAC - u3 - 8 62 58382 58437 58380 58440 72 + 0.00017 22.6 0.7 - trnV-UAC - u3 - 7 65 31614 31673 31610 31689 72 + 0.0002 22.4 0.7 - trnK-UUU - u3 - 1 72 57643 57572 57643 57571 73 - 0.00029 21.2 0.3 - trnR-UCU - u3 - 7 60 42152 42205 42150 42206 71 + 0.0014 19.6 0.4 - atp9 - u3 - 36 233 52056 51856 52076 51835 255 - 0.0014 17.4 10.8 - trnK-UUU - u3 - 6 67 58380 58441 58378 58443 73 + 0.0014 19.0 0.5 - trnV-UAC - u3 - 8 62 37231 37177 37238 37167 72 - 0.0014 19.6 1.5 - trnK-UUU - u3 - 5 73 57723 57656 57727 57656 73 - 0.0015 18.9 0.4 - trnW-UCA - u3 - 8 61 31615 31670 31610 31676 71 + 0.0017 19.6 0.8 - trnI-GAU - u3 - 7 65 57721 57663 57727 57656 72 - 0.0021 19.5 0.5 - trnV-UAC - u3 - 8 72 28467 28402 28474 28402 72 - 0.0033 18.5 0.5 - trnS-UGA - u3 - 7 76 57860 57927 57854 57934 84 + 0.0034 18.4 1.1 - trnH-GUG - u3 - 4 66 58628 58691 58626 58698 74 + 0.0036 19.0 1.6 - trnW-UCA - u3 - 8 62 37231 37176 37236 37169 71 - 0.0046 18.2 1.3 - trnF-GAA - u3 - 3 68 22405 22468 22403 22473 74 + 0.0054 18.1 1.0 - trnR-UCG - u3 - 8 62 42153 42206 42148 42210 72 + 0.0054 17.7 0.1 - trnK-UUU - u3 - 6 63 42151 42206 42148 42215 73 + 0.0054 17.1 0.0 - trnF-GAA - u3 - 5 69 28470 28407 28472 28405 74 - 0.0066 17.8 0.7 - trnV-UAC - u3 - 3 67 64923 64989 64921 64994 72 + 0.0093 17.0 1.0 - trnV-UAC - u3 - 3 67 720 654 722 649 72 - 0.0093 17.0 1.0 - trnN-GUU - u3 - 7 64 37912 37970 37909 37972 71 + 0.0096 17.1 0.7 - trnF-GAA - u3 - 8 71 31615 31677 31608 31679 74 + 0.012 17.0 0.5 - trnS-UGA - u3 - 7 70 28013 27949 28017 27940 84 - 0.013 16.5 0.2 - trnH-GUG - u3 - 7 64 22408 22464 22404 22470 74 + 0.014 17.2 1.1 - trnH-GUG - u3 - 5 69 64924 64989 64923 64991 74 + 0.016 16.9 1.3 - trnH-GUG - u3 - 5 69 719 654 720 652 74 - 0.016 16.9 1.3 - trnF-GAA - u3 - 7 62 37912 37965 37910 37972 74 + 0.018 16.4 0.7 - trnV-UAC - u3 - 7 63 37912 37968 37908 37974 72 + 0.021 15.9 1.2 - nad4 - u3 - 830 908 34057 33979 34076 33957 1681 - 0.021 8.4 7.3 - trnH-GUG - u3 - 9 66 37231 37175 37237 37169 74 - 0.022 16.6 1.4 - trnV-UAC - u3 - 7 62 30079 30135 30076 30140 72 + 0.022 15.9 0.9 - trnW-CCA - u3 - 5 67 22407 22469 22406 22470 72 + 0.025 16.1 1.0 - trnA-UGC - u3 - 2 68 64922 64990 64922 64992 72 + 0.032 16.1 1.2 - trnA-UGC - u3 - 2 68 721 653 721 651 72 - 0.032 16.1 1.2 - trnA-UGC - u3 - 6 63 22408 22465 22406 22470 72 + 0.032 16.1 1.1 - trnV-UAC - u3 - 16 66 4600 4550 4620 4544 72 - 0.037 15.1 0.0 - trnH-GUG - u3 - 8 65 30079 30136 30077 30149 74 + 0.042 15.6 1.1 - trnR-UCG - u3 - 8 64 64928 64986 64924 64990 72 + 0.044 14.8 1.5 - trnR-UCG - u3 - 8 64 715 657 719 653 72 - 0.044 14.8 1.5 - trnW-UCA - u3 - 5 63 22407 22466 22406 22470 71 + 0.047 15.0 1.2 - trnV-UAC - u3 - 8 62 58633 58689 58626 58698 72 + 0.053 14.6 1.6 - trnM-CAU - u3 - 27 71 4590 4545 4610 4544 72 - 0.053 14.0 0.2 - trnE-UUC - u3 - 7 66 58632 58693 58628 58694 72 + 0.057 14.7 1.5 - trnN-GUU - u3 - 2 66 58376 58442 58375 58446 71 + 0.058 14.6 0.8 - trnI-GAU - u3 - 7 64 37912 37969 37910 37971 72 + 0.061 14.8 1.0 - trnF-GAA - u3 - 6 66 58631 58691 58630 58694 74 + 0.13 13.7 1.5 - trnT-UGU - u3 - 8 61 42153 42205 42149 42209 72 + 0.15 13.8 0.2 - trnW-CCA - u3 - 6 66 28469 28408 28474 28403 72 - 0.16 13.5 0.6 - trnR-ACG - u3 - 8 60 22410 22463 22409 22468 71 + 0.16 13.2 1.3 - trnI-GAU - u3 - 36 72 57607 57571 57614 57571 72 - 0.24 12.9 0.9 - trnR-UCG - u3 - 28 66 57615 57577 57624 57572 72 - 0.24 12.5 1.1 - trnK-UUU - u3 - 1 71 58626 58697 58626 58698 73 + 0.24 11.9 2.1 - trnW-UCA - u3 - 10 65 57634 57577 57641 57572 71 - 0.25 12.7 0.8 - trnD-GUC - u3 - 8 63 37913 37967 37911 37971 73 + 0.31 12.9 0.9 - trnI-GAU - u3 - 4 68 31611 31676 31610 31677 72 + 0.44 12.1 0.8 - trnW-CCA - u3 - 7 64 57637 57579 57638 57577 72 - 0.62 11.6 1.3 - trnT-UGU - u3 - 8 61 58382 58436 58382 58440 72 + 0.71 11.6 0.5 - nad6 - u3 - 346 554 23861 23640 23866 23620 831 - 0.77 5.6 15.4 - trnY-GUA - u3 - 48 82 64957 64991 64937 64994 85 + 0.8 11.0 0.2 - trnY-GUA - u3 - 48 82 686 652 706 649 85 - 0.8 11.0 0.2 - trnE-UUC - u3 - 46 66 28051 28031 28063 28028 72 - 1.1 10.5 0.0 - trnM-CAU - u3 - 38 68 42182 42212 42181 42216 72 + 1.1 9.7 1.2 - trnH-GUG - u3 - 8 31 31614 31637 31610 31658 74 + 1.2 11.0 0.9 - trnV-UAC - u3 - 4 63 58482 58556 58479 58566 72 + 1.3 10.2 1.7 - trnS-UGA - u3 - 54 82 57686 57658 57706 57657 84 - 1.3 10.1 0.6 - atp9 - u3 - 58 124 23767 23836 23759 23856 255 + 1.4 7.6 8.6 - trnG-UCC - u3 - 26 59 27980 27947 27983 27941 71 - 1.4 10.3 0.6 - trnA-UGC - u3 - 44 72 28053 28025 28070 28025 72 - 1.4 10.8 0.0 - nad2 - u3 - 1217 1289 53756 53684 53782 53663 1733 - 1.7 2.4 23.4 - trnA-UGC - u3 - 1 62 58626 58689 58626 58697 72 + 1.7 10.6 1.5 - nad3 - u3 - 78 147 46478 46538 46457 46558 594 + 1.8 4.3 9.4 - trnS-GCU - u3 - 2 82 58480 58564 58479 58564 83 + 2 10.2 1.4 - trnE-UUC - u3 - 32 66 27975 27941 27984 27938 72 - 2.1 9.7 0.2 - trnP-UGG - u3 - 9 65 3996 3925 3998 3923 73 - 2.2 9.5 0.9 - rps3 - u3 - 599 751 16739 16476 16895 16456 1587 - 2.4 3.0 57.0 - trnG-UCC - u3 - 13 61 57715 57666 57722 57662 71 - 2.6 9.4 0.2 - nad4 - u3 - 152 261 52056 52165 51951 52185 1681 + 2.7 1.4 21.7 - trnM-CAU - u3 - 4 33 42149 42177 42146 42177 72 + 2.8 8.4 0.6 - trnG-UCC - u3 - 21 65 57614 57577 57621 57576 71 - 2.9 9.2 1.1 - nad6 - u3 - 333 371 45189 45227 45179 45248 831 + 3.1 3.6 7.6 - atp9 - u3 - 50 175 35882 35989 35877 35991 255 + 3.5 6.3 8.6 - trnA-UGC - u3 - 5 65 57639 57578 57643 57576 72 - 3.6 9.5 0.7 - trnN-GUU - u3 - 7 62 58485 58556 58483 58561 71 + 4.2 8.6 1.3 - trnG-UCC - u3 - 2 69 37907 37975 37906 37977 71 + 5.1 8.5 2.1 - trnT-UGU - u3 - 32 64 57611 57579 57613 57574 72 - 5.2 8.8 1.7 - rps3 - u3 - 176 381 33824 34146 33725 34187 1587 + 5.8 1.7 66.8 - trnE-UUC - u3 - 45 64 58537 58557 58528 58561 72 + 5.9 8.2 0.6 - trnS-UGA - u3 - 55 76 58418 58439 58398 58442 84 + 7.1 7.8 0.0 - trnY-GUA - u3 - 54 80 58534 58560 58513 58566 85 + 7.5 7.9 1.7 - atp9 - u3 - 26 80 35744 35804 35724 35824 255 + 7.6 5.2 2.5 - nad1 - u3 - 145 228 37641 37702 37587 37722 1194 + 8.3 0.6 9.7 - rps3 - u3 - 150 167 25390 25318 25810 25135 1587 - 8.8 1.1 100.6 - trnC-GCA - u3 - 48 65 57595 57578 57606 57572 71 - 9.7 7.3 0.9 - rrn16 - u4 - 2096 2483 28 337 23 348 2548 + 7.3e-26 85.0 6.1 - rrn16 - u4 - 2096 2483 41618 41309 41623 41298 2548 - 7.3e-26 85.0 6.1 - trnL-UAG - u4 - 2 79 1246 1323 1245 1326 82 + 4.4e-12 46.9 2.6 - trnL-UAA - u4 - 6 75 16035 16108 16031 16113 83 + 2.5e-11 44.3 1.1 - trnL-UAA - u4 - 5 80 1249 1323 1245 1326 83 + 5.4e-06 27.2 2.7 - trnL-UAG - u4 - 3 76 16032 16110 16030 16114 82 + 7.1e-06 27.0 1.4 - trnV-UAC - u4 - 8 62 12062 12116 12058 12120 72 + 8.9e-05 22.9 0.4 - trnF-GAA - u4 - 2 72 12056 12124 12056 12124 74 + 0.00014 22.6 0.5 - trnN-GUU - u4 - 3 63 12057 12118 12056 12126 71 + 0.00043 20.8 0.4 - trnK-UUU - u4 - 8 65 12062 12118 12059 12121 73 + 0.0011 18.7 0.4 - trnV-UAC - u4 - 8 71 35922 35987 35915 35988 72 + 0.0017 18.7 0.8 - trnW-UCA - u4 - 14 66 15898 15951 15888 15954 71 + 0.0056 17.4 0.0 - trnP-UGG - u4 - 6 67 1250 1320 1246 1324 73 + 0.032 14.8 1.4 - rps3 - u4 - 1037 1096 27936 27886 27956 27831 1587 - 0.052 7.8 3.8 - trnW-CCA - u4 - 4 67 16033 16111 16030 16114 72 + 0.072 14.0 1.3 - trnR-ACG - u4 - 9 60 35923 35977 35917 35983 71 + 0.088 13.4 0.7 - trnQ-UUG - u4 - 14 72 36031 36089 36012 36090 73 + 0.21 11.9 1.0 - trnQ-UUG - u4 - 43 69 1297 1322 1274 1324 73 + 0.21 11.9 2.6 - trnK-UUU - u4 - 1 67 35915 35982 35915 35988 73 + 0.3 10.9 1.3 - trnK-UUU - u4 - 15 65 36032 36082 36020 36088 73 + 0.38 10.6 0.9 - trnY-GUA - u4 - 52 85 35955 35988 35943 35988 85 + 0.41 11.3 1.1 - trnR-UCU - u4 - 3 62 12057 12117 12055 12125 71 + 0.43 11.0 0.3 - rps3 - u4 - 581 731 13131 12988 13556 12930 1587 - 0.47 4.6 71.2 - trnF-GAA - u4 - 17 73 1261 1325 1241 1326 74 + 0.55 11.1 1.4 - trnR-UCG - u4 - 18 64 12071 12118 12061 12124 72 + 1.1 9.7 0.0 - trnS-UGA - u4 - 56 78 36062 36084 36043 36088 84 + 1.1 9.7 0.7 - trnP-UGG - u4 - 46 67 36063 36084 36059 36088 73 + 1.8 9.2 0.7 - trnS-UGA - u4 - 55 81 35959 35985 35937 35987 84 + 1.9 9.0 0.8 - trnE-UUC - u4 - 46 67 35962 35983 35953 35988 72 + 2.6 8.8 0.9 - trnG-UCC - u4 - 13 44 8330 8298 8337 8296 71 - 2.8 8.7 5.2 - trnS-UGA - u4 - 53 77 12095 12119 12075 12120 84 + 3.3 8.2 0.2 - trnY-GUA - u4 - 56 76 36061 36081 36043 36088 85 + 3.9 8.1 0.8 - trnY-GUA - u4 - 52 78 1293 1319 1272 1325 85 + 7.4 7.2 2.9 - trnE-UUC - u4 - 47 64 36065 36082 36042 36084 72 + 8.7 7.1 0.4 - # # Program: nhmmscan # Version: 3.4 (Aug 2023) # Pipeline mode: SCAN # Query file: ./tmp_XXXXtZErgV/tmpXXXXNmB9EX.fa # Target file: /usr/local/oatkdb/dikarya_mito.fam # Option settings: nhmmscan -o /dev/null --tblout ./tmp_XXXXtZErgV/tmpXXXXNN0CmX.out --noali --cpu 1 /usr/local/oatkdb/dikarya_mito.fam ./tmp_XXXXtZErgV/tmpXXXXNmB9EX.fa # Current dir: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/assemble~oatk # Date: Wed May 14 17:05:56 2025 # [ok] # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- trnC-GCA - u29 - 18 36 60 78 60 92 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 146 164 146 178 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 232 250 232 264 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 318 336 318 350 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 404 422 404 436 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 490 508 490 522 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 576 594 576 608 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 662 680 662 694 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 748 766 748 780 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 834 852 834 866 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 920 938 920 952 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 1006 1024 1006 1038 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 1092 1110 1092 1124 71 + 2.9 3.5 0.8 - trnC-GCA - u29 - 18 36 1178 1196 1178 1207 71 + 3.1 3.4 0.9 - # # Program: nhmmscan # Version: 3.4 (Aug 2023) # Pipeline mode: SCAN # Query file: ./tmp_XXXXtZErgV/tmpXXXXdZSRJx.fa # Target file: /usr/local/oatkdb/dikarya_mito.fam # Option settings: nhmmscan -o /dev/null --tblout ./tmp_XXXXtZErgV/tmpXXXXARZdrq.out --noali --cpu 1 /usr/local/oatkdb/dikarya_mito.fam ./tmp_XXXXtZErgV/tmpXXXXdZSRJx.fa # Current dir: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/assemble~oatk # Date: Wed May 14 17:04:13 2025 # [ok]