# hmmscan :: search sequence(s) against a profile database # HMMER 3.2.1 (June 2018); http://hmmer.org/ # Copyright (C) 2018 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: Trinity.demo.fa.transdecoder.pep # target HMM database: /usr/local/Trinotate-Trinotate-v3.1.1/db/Pfam-A.hmm # per-dom hits tabular output: TrinotatePFAM.out # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TRINITY_DN1_c0_g1_i1.p1 [L=165] Description: TRINITY_DN1_c0_g1~~TRINITY_DN1_c0_g1_i1.p1 ORF type:complete len:165 (+),score=153.15 TRINITY_DN1_c0_g1_i1:239-733(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-12 47.7 0.0 2e-12 47.3 0.0 1.1 1 CH Calponin homology (CH) domain ------ inclusion threshold ------ 0.096 12.5 0.0 0.18 11.7 0.0 1.5 1 CAMSAP_CH CAMSAP CH domain Domain annotation for each model (and alignments): >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.3 0.0 2.2e-16 2e-12 7 106 .. 36 144 .. 34 147 .. 0.79 Alignments for each domain: == domain 1 score: 47.3 bits; conditional E-value: 2.2e-16 HHHHHHHHHTTSTTSSTT.....SCHHHHHTTSHHHHHHHHHH.....STTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTS CS CH 7 llrWinshleeagpkvkv.....edfeedlrDGvlLckLlnkl.....apglvdkkklnksefkkleNinlaldvaekklgvpkvl 82 +++Win ++++ + + ++ + lrDG++LckL+nkl +p + + s+f +l Ni+ + + +e ++g+ + TRINITY_DN1_c0_g1_i1.p1 36 VVNWINGLMQGEHDP--IpatdwKSICNHLRDGIMLCKLINKLlategKPAKTFQ--KKSSPFVALANIEAFNKGCE-EYGLAREF 116 689******886444..4468888999****************977664444222..2224*********8888777.9**98888 PP S.-HHHHHT..TSHH.HHHHHHHHHHHH CS CH 83 i.eaedlve..gknk.svltllaqLfra 106 ++ dl+e + ++ vl++l++L + TRINITY_DN1_c0_g1_i1.p1 117 QfQSGDLWEcrKGPFlNVLNCLHSLGFH 144 77*******8766668********9765 PP >> CAMSAP_CH CAMSAP CH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 2e-05 0.18 15 84 .. 58 126 .. 48 127 .. 0.86 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2e-05 CAMSAP_CH 15 dllrdlsdGvaLaalihfYcPqliklediclkesmsladslyNiqllqefcerkLgnsvfhltleDllyv 84 + l+dG+ L++li+ + ++ k +++++ s + l Ni+ +++ ce++ + f+++ Dl + TRINITY_DN1_c0_g1_i1.p1 58 SICNHLRDGIMLCKLINKLLATEGKP-AKTFQKKSSPFVALANIEAFNKGCEEYGLAREFQFQSGDLWEC 126 566789*************9999987.55789********************995588888888888766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (165 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 422 (0.0235373); expected 358.6 (0.02) Passed bias filter: 393 (0.0219198); expected 358.6 (0.02) Passed Vit filter: 20 (0.00111551); expected 17.9 (0.001) Passed Fwd filter: 2 (0.000111551); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.38u 0.49s 00:00:00.87 Elapsed: 00:00:00.41 # Mc/sec: 1206.34 // Query: TRINITY_DN1_c0_g1_i2.p1 [L=166] Description: TRINITY_DN1_c0_g1~~TRINITY_DN1_c0_g1_i2.p1 ORF type:complete len:166 (+),score=162.08 TRINITY_DN1_c0_g1_i2:280-777(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-12 47.7 0.0 2e-12 47.2 0.0 1.1 1 CH Calponin homology (CH) domain ------ inclusion threshold ------ 0.096 12.5 0.0 0.18 11.7 0.0 1.5 1 CAMSAP_CH CAMSAP CH domain Domain annotation for each model (and alignments): >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.2 0.0 2.2e-16 2e-12 7 106 .. 37 145 .. 35 148 .. 0.79 Alignments for each domain: == domain 1 score: 47.2 bits; conditional E-value: 2.2e-16 HHHHHHHHHTTSTTSSTT.....SCHHHHHTTSHHHHHHHHHH.....STTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTS CS CH 7 llrWinshleeagpkvkv.....edfeedlrDGvlLckLlnkl.....apglvdkkklnksefkkleNinlaldvaekklgvpkvl 82 +++Win ++++ + + ++ + lrDG++LckL+nkl +p + + s+f +l Ni+ + + +e ++g+ + TRINITY_DN1_c0_g1_i2.p1 37 VVNWINGLMQGEHDP--IpatdwKSICNHLRDGIMLCKLINKLlategKPAKTFQ--KKSSPFVALANIEAFNKGCE-EYGLAREF 117 689******886444..4468888999****************977664444222..2224*********8888777.9**98888 PP S.-HHHHHT..TSHH.HHHHHHHHHHHH CS CH 83 i.eaedlve..gknk.svltllaqLfra 106 ++ dl+e + ++ vl++l++L + TRINITY_DN1_c0_g1_i2.p1 118 QfQSGDLWEcrKGPFlNVLNCLHSLGFH 145 77*******8766668********9765 PP >> CAMSAP_CH CAMSAP CH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 2e-05 0.18 15 84 .. 59 127 .. 49 128 .. 0.86 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 2e-05 CAMSAP_CH 15 dllrdlsdGvaLaalihfYcPqliklediclkesmsladslyNiqllqefcerkLgnsvfhltleDllyv 84 + l+dG+ L++li+ + ++ k +++++ s + l Ni+ +++ ce++ + f+++ Dl + TRINITY_DN1_c0_g1_i2.p1 59 SICNHLRDGIMLCKLINKLLATEGKP-AKTFQKKSSPFVALANIEAFNKGCEEYGLAREFQFQSGDLWEC 127 566789*************9999987.55789********************995588888888888766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (166 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 443 (0.0247086); expected 358.6 (0.02) Passed bias filter: 416 (0.0232026); expected 358.6 (0.02) Passed Vit filter: 24 (0.00133861); expected 17.9 (0.001) Passed Fwd filter: 2 (0.000111551); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.38u 0.49s 00:00:00.87 Elapsed: 00:00:00.40 # Mc/sec: 1237.19 // Query: TRINITY_DN1_c0_g1_i3.p1 [L=163] Description: TRINITY_DN1_c0_g1~~TRINITY_DN1_c0_g1_i3.p1 ORF type:complete len:163 (+),score=147.56 TRINITY_DN1_c0_g1_i3:259-747(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-12 47.7 0.0 1.9e-12 47.3 0.0 1.1 1 CH Calponin homology (CH) domain ------ inclusion threshold ------ 0.092 12.6 0.0 0.17 11.7 0.0 1.5 1 CAMSAP_CH CAMSAP CH domain Domain annotation for each model (and alignments): >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.3 0.0 2.1e-16 1.9e-12 7 106 .. 34 142 .. 32 145 .. 0.79 Alignments for each domain: == domain 1 score: 47.3 bits; conditional E-value: 2.1e-16 HHHHHHHHHTTSTTSSTT.....SCHHHHHTTSHHHHHHHHHH.....STTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTS CS CH 7 llrWinshleeagpkvkv.....edfeedlrDGvlLckLlnkl.....apglvdkkklnksefkkleNinlaldvaekklgvpkvl 82 +++Win ++++ + + ++ + lrDG++LckL+nkl +p + + s+f +l Ni+ + + +e ++g+ + TRINITY_DN1_c0_g1_i3.p1 34 VVNWINGLMQGEHDP--IpatdwKSICNHLRDGIMLCKLINKLlategKPAKTFQ--KKSSPFVALANIEAFNKGCE-EYGLAREF 114 689******886444..4468888999****************977664444222..2224*********8888777.9**98888 PP S.-HHHHHT..TSHH.HHHHHHHHHHHH CS CH 83 i.eaedlve..gknk.svltllaqLfra 106 ++ dl+e + ++ vl++l++L + TRINITY_DN1_c0_g1_i3.p1 115 QfQSGDLWEcrKGPFlNVLNCLHSLGFH 142 77*******8766668********9765 PP >> CAMSAP_CH CAMSAP CH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 1.9e-05 0.17 15 84 .. 56 124 .. 46 125 .. 0.86 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1.9e-05 CAMSAP_CH 15 dllrdlsdGvaLaalihfYcPqliklediclkesmsladslyNiqllqefcerkLgnsvfhltleDllyv 84 + l+dG+ L++li+ + ++ k +++++ s + l Ni+ +++ ce++ + f+++ Dl + TRINITY_DN1_c0_g1_i3.p1 56 SICNHLRDGIMLCKLINKLLATEGKP-AKTFQKKSSPFVALANIEAFNKGCEEYGLAREFQFQSGDLWEC 124 566789*************9999987.55789********************995588888888888766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (163 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 404 (0.0225333); expected 358.6 (0.02) Passed bias filter: 383 (0.021362); expected 358.6 (0.02) Passed Vit filter: 20 (0.00111551); expected 17.9 (0.001) Passed Fwd filter: 2 (0.000111551); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.39u 0.47s 00:00:00.86 Elapsed: 00:00:00.39 # Mc/sec: 1250.67 // Query: TRINITY_DN2_c0_g1_i1.p1 [L=453] Description: TRINITY_DN2_c0_g1~~TRINITY_DN2_c0_g1_i1.p1 ORF type:complete len:453 (+),score=614.37 TRINITY_DN2_c0_g1_i1:277-1635(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-88 290.4 61.4 5.7e-14 51.5 0.9 8.4 8 Calponin Calponin family repeat 4.8e-19 68.5 0.0 6.8e-19 68.1 0.0 1.2 1 CH Calponin homology (CH) domain 0.002 17.4 0.3 18 4.5 0.0 4.7 5 PNP_UDP_1 Phosphorylase superfamily Domain annotation for each model (and alignments): >> Calponin Calponin family repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.1 0.2 0.55 3.3e+03 16 23 .. 5 12 .. 5 13 .. 0.88 2 ! 46.6 1.6 3.2e-16 1.9e-12 1 25 [] 178 201 .. 178 201 .. 0.99 3 ! 44.1 0.6 1.9e-15 1.1e-11 1 25 [] 217 240 .. 217 240 .. 0.96 4 ! 51.5 0.9 9.5e-18 5.7e-14 1 25 [] 256 279 .. 256 279 .. 0.99 5 ! 50.8 2.2 1.5e-17 8.8e-14 1 25 [] 295 318 .. 295 318 .. 0.99 6 ! 46.9 2.1 2.6e-16 1.5e-12 1 25 [] 334 357 .. 334 357 .. 0.99 7 ! 46.7 2.8 2.9e-16 1.7e-12 1 25 [] 373 396 .. 373 396 .. 0.99 8 ! 41.3 2.4 1.4e-14 8.3e-11 1 23 [. 412 434 .. 412 436 .. 0.97 Alignments for each domain: == domain 1 score: -2.1 bits; conditional E-value: 0.55 Calponin 16 MtafGarR 23 M ++G+ R TRINITY_DN2_c0_g1_i1.p1 5 MKPMGMDR 12 999**988 PP == domain 2 score: 46.6 bits; conditional E-value: 3.2e-16 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ+GtNK+ASQ+GM +G RhI TRINITY_DN2_c0_g1_i1.p1 178 IGLQAGTNKCASQKGMK-IGGARHI 201 9****************.******9 PP == domain 3 score: 44.1 bits; conditional E-value: 1.9e-15 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 ++ Q+GtNK+ASQ+GM+ +G++RhI TRINITY_DN2_c0_g1_i1.p1 217 LSAQAGTNKFASQKGMS-IGSVRHI 240 688**************.******9 PP == domain 4 score: 51.5 bits; conditional E-value: 9.5e-18 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ+G+NK+ASQsGM+ fGa+RhI TRINITY_DN2_c0_g1_i1.p1 256 IGLQAGSNKFASQSGMS-FGAVRHI 279 9****************.******9 PP == domain 5 score: 50.8 bits; conditional E-value: 1.5e-17 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ+G+NKgASQsGM+ fGa+RhI TRINITY_DN2_c0_g1_i1.p1 295 IGLQAGSNKGASQSGMS-FGAVRHI 318 9****************.******9 PP == domain 6 score: 46.9 bits; conditional E-value: 2.6e-16 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ G+N++ASQ+GM+ fG++RhI TRINITY_DN2_c0_g1_i1.p1 334 IGLQSGSNQFASQKGMS-FGNVRHI 357 9****************.******9 PP == domain 7 score: 46.7 bits; conditional E-value: 2.9e-16 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ G+NKgASQsGM+ fG++RhI TRINITY_DN2_c0_g1_i1.p1 373 IGLQSGSNKGASQSGMS-FGSVRHI 396 9****************.******9 PP == domain 8 score: 41.3 bits; conditional E-value: 1.4e-14 Calponin 1 IgLQmGtNKgASQsGMtafGarR 23 IgLQ+G+N gASQsGMt+fG++R TRINITY_DN2_c0_g1_i1.p1 412 IGLQYGSNEGASQSGMTGFGTTR 434 9*********************9 PP >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.1 0.0 1.1e-22 6.8e-19 3 108 .. 26 141 .. 24 142 .. 0.88 Alignments for each domain: == domain 1 score: 68.1 bits; conditional E-value: 1.1e-22 HHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHH......STTTSSGGGSTTT....HHHHHHHHHHHHHHHHHHTTC CS CH 3 qkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnkl......apglvdkkklnks....efkkleNinlaldvaekklgv 78 ++ e+++Wi++ ++e+ ++ ++e++lrDGv+L+k+l+kl p +++k kln++ +fk++eNi+ +l+ a+ ++gv TRINITY_DN2_c0_g1_i1.p1 26 AEAEVRNWIKQLIGED-IGDGAMNVEKNLRDGVILIKVLKKLyegtsnLPPACNKMKLNYNtmsaPFKQMENIEVFLKGAN-AYGV 109 68899**********9.55567********************77777755555666666669999*************777.**** PP HTTSS.-HHHHHTTSHH.HHHHHHHHHHHHHH CS CH 79 pkvli.eaedlvegknk.svltllaqLfrafq 108 p+ + +++dl+eg+n+ +v+++++qL + +q TRINITY_DN2_c0_g1_i1.p1 110 PLNSLfQTVDLYEGRNMaMVVATILQLGTEAQ 141 ***************************98765 PP >> PNP_UDP_1 Phosphorylase superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.0 0.13 8e+02 183 208 .. 226 251 .. 223 256 .. 0.86 2 ! 4.5 0.0 0.003 18 183 208 .. 265 290 .. 263 299 .. 0.88 3 ! 3.4 0.0 0.0065 39 184 208 .. 305 329 .. 303 334 .. 0.87 4 ? 1.9 0.0 0.019 1.1e+02 182 208 .. 342 368 .. 341 376 .. 0.84 5 ? -0.6 0.0 0.11 6.6e+02 184 206 .. 383 405 .. 382 415 .. 0.80 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.13 HHHHTT--EEEEEEEEETTTBETTCT CS PNP_UDP_1 183 lArelgipfaairvvsdlaaggadae 208 +A++ g+ +++r ++d+ a+++++e TRINITY_DN2_c0_g1_i1.p1 226 FASQKGMSIGSVRHIADIRADDMSQE 251 68899************999977765 PP == domain 2 score: 4.5 bits; conditional E-value: 0.003 HHHHTT--EEEEEEEEETTTBETTCT CS PNP_UDP_1 183 lArelgipfaairvvsdlaaggadae 208 +A++ g+ f+a+r +sd+ a+++++e TRINITY_DN2_c0_g1_i1.p1 265 FASQSGMSFGAVRHISDIRADDMSQE 290 69999************999987766 PP == domain 3 score: 3.4 bits; conditional E-value: 0.0065 HHHTT--EEEEEEEEETTTBETTCT CS PNP_UDP_1 184 Arelgipfaairvvsdlaaggadae 208 A++ g+ f+a+r +sd+ a+++++e TRINITY_DN2_c0_g1_i1.p1 305 ASQSGMSFGAVRHISDIRADDMSQE 329 7789************999988776 PP == domain 4 score: 1.9 bits; conditional E-value: 0.019 HHHHHTT--EEEEEEEEETTTBETTCT CS PNP_UDP_1 182 qlArelgipfaairvvsdlaaggadae 208 q+A++ g+ f+ +r +sd+ a+ +++e TRINITY_DN2_c0_g1_i1.p1 342 QFASQKGMSFGNVRHISDIRADEMSQE 368 689999************888855554 PP == domain 5 score: -0.6 bits; conditional E-value: 0.11 HHHTT--EEEEEEEEETTTBETT CS PNP_UDP_1 184 Arelgipfaairvvsdlaaggad 206 A++ g+ f+++r ++d+ a+ d TRINITY_DN2_c0_g1_i1.p1 383 ASQSGMSFGSVRHIADIRADEYD 405 67889***********8777444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (453 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 260 (0.0145016); expected 358.6 (0.02) Passed bias filter: 206 (0.0114898); expected 358.6 (0.02) Passed Vit filter: 21 (0.00117129); expected 17.9 (0.001) Passed Fwd filter: 4 (0.000223102); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.45u 0.45s 00:00:00.90 Elapsed: 00:00:00.39 # Mc/sec: 3453.57 // Query: TRINITY_DN2_c0_g1_i2.p1 [L=399] Description: TRINITY_DN2_c0_g1~~TRINITY_DN2_c0_g1_i2.p1 ORF type:complete len:399 (+),score=582.81 TRINITY_DN2_c0_g1_i2:277-1473(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-62 205.8 45.2 6.5e-15 54.5 1.1 6.4 7 Calponin Calponin family repeat 2.7e-20 72.6 0.0 4.8e-20 71.8 0.0 1.4 1 CH Calponin homology (CH) domain ------ inclusion threshold ------ 0.2 11.5 0.5 26 4.8 0.0 2.8 3 B3 B3 DNA binding domain Domain annotation for each model (and alignments): >> Calponin Calponin family repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.1 0.35 2.1e+03 16 23 .. 5 12 .. 5 14 .. 0.87 2 ! 42.3 1.7 7.1e-15 4.2e-11 1 25 [] 174 199 .. 174 199 .. 0.94 3 ! 54.5 1.1 1.1e-18 6.5e-15 1 25 [] 215 239 .. 215 239 .. 0.99 4 ! 42.4 1.2 6.3e-15 3.8e-11 1 25 [] 255 280 .. 255 280 .. 0.94 5 ! 52.0 1.6 6.6e-18 3.9e-14 1 25 [] 296 320 .. 296 320 .. 0.99 6 ! 44.8 0.9 1.1e-15 6.7e-12 2 25 .] 337 360 .. 336 360 .. 0.97 7 ? -3.7 0.5 1.7 9.9e+03 4 6 .. 376 378 .. 375 380 .. 0.75 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.35 Calponin 16 MtafGarR 23 M ++G+ R TRINITY_DN2_c0_g1_i2.p1 5 MKPMGMDR 12 999**999 PP == domain 2 score: 42.3 bits; conditional E-value: 7.1e-15 Calponin 1 IgLQmGtNKgASQsGMt.afGarRhI 25 IgLQ GtNK+ASQ+GM +fGa+RhI TRINITY_DN2_c0_g1_i2.p1 174 IGLQSGTNKFASQKGMRgGFGAVRHI 199 9***************746******9 PP == domain 3 score: 54.5 bits; conditional E-value: 1.1e-18 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ+G+NK+ASQ+GMt+fGa+RhI TRINITY_DN2_c0_g1_i2.p1 215 IGLQAGSNKFASQKGMTGFGAVRHI 239 9***********************9 PP == domain 4 score: 42.4 bits; conditional E-value: 6.3e-15 Calponin 1 IgLQmGtNKgASQsGMt.afGarRhI 25 I+LQ GtNK+ASQ+GM +fGa+RhI TRINITY_DN2_c0_g1_i2.p1 255 ISLQSGTNKFASQKGMRgGFGAVRHI 280 9***************746******9 PP == domain 5 score: 52.0 bits; conditional E-value: 6.6e-18 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 I+LQ+G+N++ASQ+GMt+fGa+RhI TRINITY_DN2_c0_g1_i2.p1 296 INLQAGSNQFASQKGMTGFGAVRHI 320 89**********************9 PP == domain 6 score: 44.8 bits; conditional E-value: 1.1e-15 Calponin 2 gLQmGtNKgASQsGMtafGarRhI 25 +LQ+GtN+++SQ+GM +fGa+Rh+ TRINITY_DN2_c0_g1_i2.p1 337 SLQYGTNQFDSQAGMRGFGAQRHV 360 8**********************6 PP == domain 7 score: -3.7 bits; conditional E-value: 1.7 Calponin 4 QmG 6 QmG TRINITY_DN2_c0_g1_i2.p1 376 QMG 378 999 PP >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 0.0 8e-24 4.8e-20 3 108 .. 26 141 .. 24 142 .. 0.91 Alignments for each domain: == domain 1 score: 71.8 bits; conditional E-value: 8e-24 HHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT..........HHHHHHHHHHHHHHHHHHTTC CS CH 3 qkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks..........efkkleNinlaldvaekklgv 78 ++ e+++Wi++ ++e+ ++ ++e++lrDGv+L+kLl+kl+ g+ ++ + +++ +fk++eNi+ +l+ a+ ++gv TRINITY_DN2_c0_g1_i2.p1 26 AEAEVRNWIKQLIGED-IGDGAMNVEKNLRDGVILIKLLQKLYEGTSNLPNKARTmklsyntmnaPFKQMENIEVFLKGAN-AYGV 109 68899**********9.55567********************9999888888777899999999**************777.**** PP HTTSS.-HHHHHTTSHH.HHHHHHHHHHHHHH CS CH 79 pkvli.eaedlvegknk.svltllaqLfrafq 108 p+ + +++dl+eg+n+ +v+++++qL + +q TRINITY_DN2_c0_g1_i2.p1 110 PLNSLfQTVDLYEGRNMaMVVATILQLGTEAQ 141 ***************************98765 PP >> B3 B3 DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.0 0.0043 26 47 77 .. 160 191 .. 149 193 .. 0.73 2 ? -4.1 0.0 2.5 1.5e+04 62 74 .. 217 229 .. 210 231 .. 0.75 3 ? 3.8 0.0 0.0086 51 54 77 .. 249 272 .. 243 274 .. 0.83 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0043 EEEEEEE.ECCTTEEEEETTHHHHHHHTT--T CS B3 47 Wevkliy.rkksgryvltkGWkeFvkangLke 77 ++ + +++ g + l++G+++F++++g++ TRINITY_DN2_c0_g1_i2.p1 160 VQFSYEQlKNSHGVIGLQSGTNKFASQKGMRG 191 3444433355555599************9875 PP == domain 2 score: -4.1 bits; conditional E-value: 2.5 EETTHHHHHHHTT CS B3 62 ltkGWkeFvkang 74 l+ G ++F++++g TRINITY_DN2_c0_g1_i2.p1 217 LQAGSNKFASQKG 229 7788889998887 PP == domain 3 score: 3.8 bits; conditional E-value: 0.0086 ECCTTEEEEETTHHHHHHHTT--T CS B3 54 rkksgryvltkGWkeFvkangLke 77 +++s ++ l++G+++F++++g++ TRINITY_DN2_c0_g1_i2.p1 249 KESSTDISLQSGTNKFASQKGMRG 272 45677799************9875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (399 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 486 (0.0271069); expected 358.6 (0.02) Passed bias filter: 369 (0.0205812); expected 358.6 (0.02) Passed Vit filter: 33 (0.00184059); expected 17.9 (0.001) Passed Fwd filter: 3 (0.000167327); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.44u 0.46s 00:00:00.90 Elapsed: 00:00:00.40 # Mc/sec: 2992.18 // Query: TRINITY_DN2_c0_g1_i3.p1 [L=361] Description: TRINITY_DN2_c0_g1~~TRINITY_DN2_c0_g1_i3.p1 ORF type:complete len:361 (+),score=499.86 TRINITY_DN2_c0_g1_i3:277-1359(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-47 156.7 25.9 2.1e-14 52.8 0.4 5.2 6 Calponin Calponin family repeat 2.9e-19 69.3 0.0 4.4e-19 68.7 0.0 1.3 1 CH Calponin homology (CH) domain 0.0052 16.6 0.2 2.1 8.1 0.0 2.8 3 FTCD_N Formiminotransferase domain, N-terminal subdomain Domain annotation for each model (and alignments): >> Calponin Calponin family repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.1 0.31 1.9e+03 16 23 .. 5 12 .. 5 14 .. 0.87 2 ? -3.6 0.1 1.6 9.5e+03 14 20 .. 102 108 .. 102 108 .. 0.57 3 ! 51.6 0.6 8.4e-18 5e-14 1 25 [] 174 198 .. 174 198 .. 0.99 4 ! 52.8 0.4 3.5e-18 2.1e-14 1 25 [] 214 238 .. 214 238 .. 0.97 5 ! 47.6 0.2 1.5e-16 8.9e-13 1 25 [] 254 278 .. 254 278 .. 0.99 6 ! 21.8 0.9 1.8e-08 0.00011 7 25 .] 300 318 .. 294 318 .. 0.83 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.31 Calponin 16 MtafGarR 23 M ++G+ R TRINITY_DN2_c0_g1_i3.p1 5 MKPMGMDR 12 999**999 PP == domain 2 score: -3.6 bits; conditional E-value: 1.6 Calponin 14 sGMtafG 20 +G +a+G TRINITY_DN2_c0_g1_i3.p1 102 KGANAYG 108 5666666 PP == domain 3 score: 51.6 bits; conditional E-value: 8.4e-18 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ GtNK++SQ+GMta+Ga+RhI TRINITY_DN2_c0_g1_i3.p1 174 IGLQSGTNKFDSQKGMTAMGAVRHI 198 9***********************9 PP == domain 4 score: 52.8 bits; conditional E-value: 3.5e-18 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 I LQ+GtNK+ASQ+GMta+Ga+RhI TRINITY_DN2_c0_g1_i3.p1 214 ITLQAGTNKFASQKGMTAIGAVRHI 238 78**********************9 PP == domain 5 score: 47.6 bits; conditional E-value: 1.5e-16 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 I+LQ GtNK++SQ+GM +fGa+RhI TRINITY_DN2_c0_g1_i3.p1 254 INLQSGTNKFDSQKGMRGFGAVRHI 278 89**********************9 PP == domain 6 score: 21.8 bits; conditional E-value: 1.8e-08 Calponin 7 tNKgASQsGMtafGarRhI 25 + g+SQ+GM +fGa Rh+ TRINITY_DN2_c0_g1_i3.p1 300 YTGGDSQAGMRGFGAARHV 318 6789**************6 PP >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.7 0.0 7.3e-23 4.4e-19 3 108 .. 26 141 .. 24 142 .. 0.88 Alignments for each domain: == domain 1 score: 68.7 bits; conditional E-value: 7.3e-23 HHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHH......STTTSSGGGSTTT....HHHHHHHHHHHHHHHHHHTTC CS CH 3 qkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnkl......apglvdkkklnks....efkkleNinlaldvaekklgv 78 ++ e+++Wi++ ++e+ ++ ++e++lrDGv+L+k+l+kl p +++k kln++ +fk++eNi+ +l+ a+ ++gv TRINITY_DN2_c0_g1_i3.p1 26 AEAEVRNWIKQLIGED-IGDGAMNVEKNLRDGVILIKVLKKLyegtsnLPPACNKMKLNYNtmsaPFKQMENIEVFLKGAN-AYGV 109 68899**********9.55567********************77777755555666666669999*************777.**** PP HTTSS.-HHHHHTTSHH.HHHHHHHHHHHHHH CS CH 79 pkvli.eaedlvegknk.svltllaqLfrafq 108 p+ + +++dl+eg+n+ +v+++++qL + +q TRINITY_DN2_c0_g1_i3.p1 110 PLNSLfQTVDLYEGRNMaMVVATILQLGTEAQ 141 ***************************98765 PP >> FTCD_N Formiminotransferase domain, N-terminal subdomain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 0.0 0.00035 2.1 131 175 .. 151 194 .. 109 195 .. 0.77 2 ! 5.6 0.0 0.0021 12 134 175 .. 197 234 .. 195 235 .. 0.85 3 ? -2.0 0.0 0.46 2.7e+03 155 175 .. 254 274 .. 236 299 .. 0.64 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00035 FTCD_N 131 erknLaaiRrg.efeglkeklkeeewkpdfGpaevspkaGvtvvGA 175 +++++ Rr+ +e+lk++ ++ + G +++++++G+t++GA TRINITY_DN2_c0_g1_i3.p1 151 GSRPVEENRRNfSYEQLKSSH--GSIGLQSGTNKFDSQKGMTAMGA 194 567888999999*****8755..4599******************9 PP == domain 2 score: 5.6 bits; conditional E-value: 0.0021 FTCD_N 134 nLaaiRrgefeglkeklkeeewkpdfGpaevspkaGvtvvGA 175 ++++iR +f +++e ++ ++G +++ +++G+t++GA TRINITY_DN2_c0_g1_i3.p1 197 HISDIRADKFDQTSEG----CITLQAGTNKFASQKGMTAIGA 234 5678999999888764....47899****************9 PP == domain 3 score: -2.0 bits; conditional E-value: 0.46 FTCD_N 155 wkpdfGpaevspkaGvtvvGA 175 ++ + G +++++++G+ GA TRINITY_DN2_c0_g1_i3.p1 254 INLQSGTNKFDSQKGMRGFGA 274 556667777777777666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (361 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 295 (0.0164538); expected 358.6 (0.02) Passed bias filter: 262 (0.0146132); expected 358.6 (0.02) Passed Vit filter: 21 (0.00117129); expected 17.9 (0.001) Passed Fwd filter: 3 (0.000167327); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.45u 0.45s 00:00:00.90 Elapsed: 00:00:00.41 # Mc/sec: 2648.84 // Query: TRINITY_DN2_c0_g1_i4.p1 [L=453] Description: TRINITY_DN2_c0_g1~~TRINITY_DN2_c0_g1_i4.p1 ORF type:complete len:453 (+),score=658.94 TRINITY_DN2_c0_g1_i4:277-1635(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-88 290.4 61.4 5.7e-14 51.5 0.9 8.4 8 Calponin Calponin family repeat 4.3e-20 71.9 0.0 6e-20 71.4 0.0 1.2 1 CH Calponin homology (CH) domain 0.002 17.4 0.3 18 4.5 0.0 4.7 5 PNP_UDP_1 Phosphorylase superfamily Domain annotation for each model (and alignments): >> Calponin Calponin family repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.1 0.2 0.55 3.3e+03 16 23 .. 5 12 .. 5 13 .. 0.88 2 ! 46.6 1.6 3.2e-16 1.9e-12 1 25 [] 178 201 .. 178 201 .. 0.99 3 ! 44.1 0.6 1.9e-15 1.1e-11 1 25 [] 217 240 .. 217 240 .. 0.96 4 ! 51.5 0.9 9.5e-18 5.7e-14 1 25 [] 256 279 .. 256 279 .. 0.99 5 ! 50.8 2.2 1.5e-17 8.8e-14 1 25 [] 295 318 .. 295 318 .. 0.99 6 ! 46.9 2.1 2.6e-16 1.5e-12 1 25 [] 334 357 .. 334 357 .. 0.99 7 ! 46.7 2.8 2.9e-16 1.7e-12 1 25 [] 373 396 .. 373 396 .. 0.99 8 ! 41.3 2.4 1.4e-14 8.3e-11 1 23 [. 412 434 .. 412 436 .. 0.97 Alignments for each domain: == domain 1 score: -2.1 bits; conditional E-value: 0.55 Calponin 16 MtafGarR 23 M ++G+ R TRINITY_DN2_c0_g1_i4.p1 5 MKPMGMDR 12 999**988 PP == domain 2 score: 46.6 bits; conditional E-value: 3.2e-16 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ+GtNK+ASQ+GM +G RhI TRINITY_DN2_c0_g1_i4.p1 178 IGLQAGTNKCASQKGMK-IGGARHI 201 9****************.******9 PP == domain 3 score: 44.1 bits; conditional E-value: 1.9e-15 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 ++ Q+GtNK+ASQ+GM+ +G++RhI TRINITY_DN2_c0_g1_i4.p1 217 LSAQAGTNKFASQKGMS-IGSVRHI 240 688**************.******9 PP == domain 4 score: 51.5 bits; conditional E-value: 9.5e-18 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ+G+NK+ASQsGM+ fGa+RhI TRINITY_DN2_c0_g1_i4.p1 256 IGLQAGSNKFASQSGMS-FGAVRHI 279 9****************.******9 PP == domain 5 score: 50.8 bits; conditional E-value: 1.5e-17 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ+G+NKgASQsGM+ fGa+RhI TRINITY_DN2_c0_g1_i4.p1 295 IGLQAGSNKGASQSGMS-FGAVRHI 318 9****************.******9 PP == domain 6 score: 46.9 bits; conditional E-value: 2.6e-16 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ G+N++ASQ+GM+ fG++RhI TRINITY_DN2_c0_g1_i4.p1 334 IGLQSGSNQFASQKGMS-FGNVRHI 357 9****************.******9 PP == domain 7 score: 46.7 bits; conditional E-value: 2.9e-16 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ G+NKgASQsGM+ fG++RhI TRINITY_DN2_c0_g1_i4.p1 373 IGLQSGSNKGASQSGMS-FGSVRHI 396 9****************.******9 PP == domain 8 score: 41.3 bits; conditional E-value: 1.4e-14 Calponin 1 IgLQmGtNKgASQsGMtafGarR 23 IgLQ+G+N gASQsGMt+fG++R TRINITY_DN2_c0_g1_i4.p1 412 IGLQYGSNEGASQSGMTGFGTTR 434 9*********************9 PP >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.4 0.0 1e-23 6e-20 3 108 .. 26 141 .. 24 142 .. 0.91 Alignments for each domain: == domain 1 score: 71.4 bits; conditional E-value: 1e-23 HHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT..........HHHHHHHHHHHHHHHHHHTTC CS CH 3 qkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks..........efkkleNinlaldvaekklgv 78 ++ e+++Wi++ ++e+ ++ ++e++lrDGv+L+kLl+kl+ g+ ++ + +++ +fk++eNi+ +l+ a+ ++gv TRINITY_DN2_c0_g1_i4.p1 26 AEAEVRNWIKQLIGED-IGDGAMNVEKNLRDGVILIKLLQKLYEGTSNLPNKARTmklsyntmnaPFKQMENIEVFLKGAN-AYGV 109 68899**********9.55567********************9999888888777899999999**************777.**** PP HTTSS.-HHHHHTTSHH.HHHHHHHHHHHHHH CS CH 79 pkvli.eaedlvegknk.svltllaqLfrafq 108 p+ + +++dl+eg+n+ +v+++++qL + +q TRINITY_DN2_c0_g1_i4.p1 110 PLNSLfQTVDLYEGRNMaMVVATILQLGTEAQ 141 ***************************98765 PP >> PNP_UDP_1 Phosphorylase superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.0 0.13 8e+02 183 208 .. 226 251 .. 223 256 .. 0.86 2 ! 4.5 0.0 0.003 18 183 208 .. 265 290 .. 263 299 .. 0.88 3 ! 3.4 0.0 0.0065 39 184 208 .. 305 329 .. 303 334 .. 0.87 4 ? 1.9 0.0 0.019 1.1e+02 182 208 .. 342 368 .. 341 376 .. 0.84 5 ? -0.6 0.0 0.11 6.6e+02 184 206 .. 383 405 .. 382 415 .. 0.80 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.13 HHHHTT--EEEEEEEEETTTBETTCT CS PNP_UDP_1 183 lArelgipfaairvvsdlaaggadae 208 +A++ g+ +++r ++d+ a+++++e TRINITY_DN2_c0_g1_i4.p1 226 FASQKGMSIGSVRHIADIRADDMSQE 251 68899************999977765 PP == domain 2 score: 4.5 bits; conditional E-value: 0.003 HHHHTT--EEEEEEEEETTTBETTCT CS PNP_UDP_1 183 lArelgipfaairvvsdlaaggadae 208 +A++ g+ f+a+r +sd+ a+++++e TRINITY_DN2_c0_g1_i4.p1 265 FASQSGMSFGAVRHISDIRADDMSQE 290 69999************999987766 PP == domain 3 score: 3.4 bits; conditional E-value: 0.0065 HHHTT--EEEEEEEEETTTBETTCT CS PNP_UDP_1 184 Arelgipfaairvvsdlaaggadae 208 A++ g+ f+a+r +sd+ a+++++e TRINITY_DN2_c0_g1_i4.p1 305 ASQSGMSFGAVRHISDIRADDMSQE 329 7789************999988776 PP == domain 4 score: 1.9 bits; conditional E-value: 0.019 HHHHHTT--EEEEEEEEETTTBETTCT CS PNP_UDP_1 182 qlArelgipfaairvvsdlaaggadae 208 q+A++ g+ f+ +r +sd+ a+ +++e TRINITY_DN2_c0_g1_i4.p1 342 QFASQKGMSFGNVRHISDIRADEMSQE 368 689999************888855554 PP == domain 5 score: -0.6 bits; conditional E-value: 0.11 HHHTT--EEEEEEEEETTTBETT CS PNP_UDP_1 184 Arelgipfaairvvsdlaaggad 206 A++ g+ f+++r ++d+ a+ d TRINITY_DN2_c0_g1_i4.p1 383 ASQSGMSFGSVRHIADIRADEYD 405 67889***********8777444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (453 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 283 (0.0157845); expected 358.6 (0.02) Passed bias filter: 223 (0.0124379); expected 358.6 (0.02) Passed Vit filter: 23 (0.00128284); expected 17.9 (0.001) Passed Fwd filter: 4 (0.000223102); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.46u 0.44s 00:00:00.90 Elapsed: 00:00:00.43 # Mc/sec: 3193.46 // Query: TRINITY_DN2_c0_g1_i5.p1 [L=361] Description: TRINITY_DN2_c0_g1~~TRINITY_DN2_c0_g1_i5.p1 ORF type:complete len:361 (+),score=544.43 TRINITY_DN2_c0_g1_i5:277-1359(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-47 156.7 25.9 2.1e-14 52.8 0.4 5.2 6 Calponin Calponin family repeat 2.6e-20 72.6 0.0 3.9e-20 72.1 0.0 1.3 1 CH Calponin homology (CH) domain 0.0051 16.6 0.2 2.1 8.1 0.0 2.8 3 FTCD_N Formiminotransferase domain, N-terminal subdomain Domain annotation for each model (and alignments): >> Calponin Calponin family repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.1 0.31 1.9e+03 16 23 .. 5 12 .. 5 14 .. 0.87 2 ? -3.6 0.1 1.6 9.5e+03 14 20 .. 102 108 .. 102 108 .. 0.57 3 ! 51.6 0.6 8.4e-18 5e-14 1 25 [] 174 198 .. 174 198 .. 0.99 4 ! 52.8 0.4 3.5e-18 2.1e-14 1 25 [] 214 238 .. 214 238 .. 0.97 5 ! 47.6 0.2 1.5e-16 8.9e-13 1 25 [] 254 278 .. 254 278 .. 0.99 6 ! 21.8 0.9 1.8e-08 0.00011 7 25 .] 300 318 .. 294 318 .. 0.83 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.31 Calponin 16 MtafGarR 23 M ++G+ R TRINITY_DN2_c0_g1_i5.p1 5 MKPMGMDR 12 999**999 PP == domain 2 score: -3.6 bits; conditional E-value: 1.6 Calponin 14 sGMtafG 20 +G +a+G TRINITY_DN2_c0_g1_i5.p1 102 KGANAYG 108 5666666 PP == domain 3 score: 51.6 bits; conditional E-value: 8.4e-18 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 IgLQ GtNK++SQ+GMta+Ga+RhI TRINITY_DN2_c0_g1_i5.p1 174 IGLQSGTNKFDSQKGMTAMGAVRHI 198 9***********************9 PP == domain 4 score: 52.8 bits; conditional E-value: 3.5e-18 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 I LQ+GtNK+ASQ+GMta+Ga+RhI TRINITY_DN2_c0_g1_i5.p1 214 ITLQAGTNKFASQKGMTAIGAVRHI 238 78**********************9 PP == domain 5 score: 47.6 bits; conditional E-value: 1.5e-16 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 I+LQ GtNK++SQ+GM +fGa+RhI TRINITY_DN2_c0_g1_i5.p1 254 INLQSGTNKFDSQKGMRGFGAVRHI 278 89**********************9 PP == domain 6 score: 21.8 bits; conditional E-value: 1.8e-08 Calponin 7 tNKgASQsGMtafGarRhI 25 + g+SQ+GM +fGa Rh+ TRINITY_DN2_c0_g1_i5.p1 300 YTGGDSQAGMRGFGAARHV 318 6789**************6 PP >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.1 0.0 6.5e-24 3.9e-20 3 108 .. 26 141 .. 24 142 .. 0.91 Alignments for each domain: == domain 1 score: 72.1 bits; conditional E-value: 6.5e-24 HHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT..........HHHHHHHHHHHHHHHHHHTTC CS CH 3 qkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks..........efkkleNinlaldvaekklgv 78 ++ e+++Wi++ ++e+ ++ ++e++lrDGv+L+kLl+kl+ g+ ++ + +++ +fk++eNi+ +l+ a+ ++gv TRINITY_DN2_c0_g1_i5.p1 26 AEAEVRNWIKQLIGED-IGDGAMNVEKNLRDGVILIKLLQKLYEGTSNLPNKARTmklsyntmnaPFKQMENIEVFLKGAN-AYGV 109 68899**********9.55567********************9999888888777899999999**************777.**** PP HTTSS.-HHHHHTTSHH.HHHHHHHHHHHHHH CS CH 79 pkvli.eaedlvegknk.svltllaqLfrafq 108 p+ + +++dl+eg+n+ +v+++++qL + +q TRINITY_DN2_c0_g1_i5.p1 110 PLNSLfQTVDLYEGRNMaMVVATILQLGTEAQ 141 ***************************98765 PP >> FTCD_N Formiminotransferase domain, N-terminal subdomain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 0.0 0.00035 2.1 131 175 .. 151 194 .. 109 195 .. 0.77 2 ! 5.6 0.0 0.0021 12 134 175 .. 197 234 .. 195 235 .. 0.85 3 ? -2.0 0.0 0.46 2.7e+03 155 175 .. 254 274 .. 236 299 .. 0.64 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00035 FTCD_N 131 erknLaaiRrg.efeglkeklkeeewkpdfGpaevspkaGvtvvGA 175 +++++ Rr+ +e+lk++ ++ + G +++++++G+t++GA TRINITY_DN2_c0_g1_i5.p1 151 GSRPVEENRRNfSYEQLKSSH--GSIGLQSGTNKFDSQKGMTAMGA 194 567888999999*****8755..4599******************9 PP == domain 2 score: 5.6 bits; conditional E-value: 0.0021 FTCD_N 134 nLaaiRrgefeglkeklkeeewkpdfGpaevspkaGvtvvGA 175 ++++iR +f +++e ++ ++G +++ +++G+t++GA TRINITY_DN2_c0_g1_i5.p1 197 HISDIRADKFDQTSEG----CITLQAGTNKFASQKGMTAIGA 234 5678999999888764....47899****************9 PP == domain 3 score: -2.0 bits; conditional E-value: 0.46 FTCD_N 155 wkpdfGpaevspkaGvtvvGA 175 ++ + G +++++++G+ GA TRINITY_DN2_c0_g1_i5.p1 254 INLQSGTNKFDSQKGMRGFGA 274 556667777777777666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (361 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 325 (0.0181271); expected 358.6 (0.02) Passed bias filter: 285 (0.015896); expected 358.6 (0.02) Passed Vit filter: 22 (0.00122706); expected 17.9 (0.001) Passed Fwd filter: 3 (0.000167327); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.47u 0.45s 00:00:00.92 Elapsed: 00:00:00.43 # Mc/sec: 2508.08 // Query: TRINITY_DN2_c0_g2_i1.p1 [L=177] Description: TRINITY_DN2_c0_g2~~TRINITY_DN2_c0_g2_i1.p1 ORF type:complete len:177 (+),score=177.84 TRINITY_DN2_c0_g2_i1:81-611(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-19 69.8 0.1 5.3e-19 68.4 0.1 1.6 2 CH Calponin homology (CH) domain 1.2e-09 37.7 4.4 1.8e-09 37.0 4.4 1.3 1 Calponin Calponin family repeat ------ inclusion threshold ------ 0.077 12.8 0.0 0.14 12.0 0.0 1.4 1 CAMSAP_CH CAMSAP CH domain Domain annotation for each model (and alignments): >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.4 0.1 8.9e-23 5.3e-19 2 108 .. 8 117 .. 7 118 .. 0.91 2 ? -1.5 0.0 0.45 2.7e+03 20 38 .. 132 151 .. 126 161 .. 0.71 Alignments for each domain: == domain 1 score: 68.4 bits; conditional E-value: 8.9e-23 HHHHHHHHHHHHHHTTSTTSSTT...SCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS. CS CH 2 eqkkellrWinshleeagpkvkv...edfeedlrDGvlLckLlnklapglvdkkklnksefkkleNinlaldvaekklgvpkvli. 83 e ++++l+Wi + l++ g+ + e+ l+DG++Lc+L+nkl pg+++k + f ++Ni+ + ++a+ k+gvp ++ TRINITY_DN2_c0_g2_i1.p1 8 ELENQALEWIAENLKGTGNDT-FdqkGAIEDILKDGIVLCNLMNKLMPGCIKKIDKKGGGFALMQNIERFQEAAK-KYGVPVNEVf 91 6799**********8864444.4677889999******************999999888*************666.********** PP -HHHHHTTSHH.HHHHHHHHHHHHHH CS CH 84 eaedlvegknk.svltllaqLfrafq 108 +++dl+e+kn +v ++++L r++q TRINITY_DN2_c0_g2_i1.p1 92 QTVDLWERKNIpQVTLCIHALGRVAQ 117 **********************9987 PP == domain 2 score: -1.5 bits; conditional E-value: 0.45 TSSTTSCHH.HHHTTSHHHH CS CH 20 pkvkvedfe.edlrDGvlLc 38 ++++df+ ++lr G + TRINITY_DN2_c0_g2_i1.p1 132 AEKQTRDFTeDQLREGRNVI 151 55677888877788887655 PP >> Calponin Calponin family repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.0 4.4 3.1e-13 1.8e-09 1 25 [] 151 174 .. 151 174 .. 0.98 Alignments for each domain: == domain 1 score: 37.0 bits; conditional E-value: 3.1e-13 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 I+LQ+G+NKgASQ+G + +G++R I TRINITY_DN2_c0_g2_i1.p1 151 ISLQYGSNKGASQAGIN-MGKQRMI 174 9****************.*****98 PP >> CAMSAP_CH CAMSAP CH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 2.3e-05 0.14 14 68 .. 36 83 .. 26 97 .. 0.82 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 2.3e-05 CAMSAP_CH 14 edllrdlsdGvaLaalihfYcPqliklediclkesmsladslyNiqllqefcerk 68 ed+ l+dG+ L++l++ ++P i + i+ ++ + ++Ni+ +qe+++++ TRINITY_DN2_c0_g2_i1.p1 36 EDI---LKDGIVLCNLMNKLMPGCI--KKID--KKGGGFALMQNIERFQEAAKKY 83 555...89*****************..5577..7777788899999999998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (177 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 448 (0.0249875); expected 358.6 (0.02) Passed bias filter: 406 (0.0226449); expected 358.6 (0.02) Passed Vit filter: 36 (0.00200792); expected 17.9 (0.001) Passed Fwd filter: 3 (0.000167327); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.48s 00:00:00.88 Elapsed: 00:00:00.41 # Mc/sec: 1285.97 // Query: TRINITY_DN2_c0_g2_i2.p1 [L=177] Description: TRINITY_DN2_c0_g2~~TRINITY_DN2_c0_g2_i2.p1 ORF type:complete len:177 (+),score=177.84 TRINITY_DN2_c0_g2_i2:81-611(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-19 69.8 0.1 5.3e-19 68.4 0.1 1.6 2 CH Calponin homology (CH) domain 1.2e-09 37.7 4.4 1.8e-09 37.0 4.4 1.3 1 Calponin Calponin family repeat ------ inclusion threshold ------ 0.077 12.8 0.0 0.14 12.0 0.0 1.4 1 CAMSAP_CH CAMSAP CH domain Domain annotation for each model (and alignments): >> CH Calponin homology (CH) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.4 0.1 8.9e-23 5.3e-19 2 108 .. 8 117 .. 7 118 .. 0.91 2 ? -1.5 0.0 0.45 2.7e+03 20 38 .. 132 151 .. 126 161 .. 0.71 Alignments for each domain: == domain 1 score: 68.4 bits; conditional E-value: 8.9e-23 HHHHHHHHHHHHHHTTSTTSSTT...SCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS. CS CH 2 eqkkellrWinshleeagpkvkv...edfeedlrDGvlLckLlnklapglvdkkklnksefkkleNinlaldvaekklgvpkvli. 83 e ++++l+Wi + l++ g+ + e+ l+DG++Lc+L+nkl pg+++k + f ++Ni+ + ++a+ k+gvp ++ TRINITY_DN2_c0_g2_i2.p1 8 ELENQALEWIAENLKGTGNDT-FdqkGAIEDILKDGIVLCNLMNKLMPGCIKKIDKKGGGFALMQNIERFQEAAK-KYGVPVNEVf 91 6799**********8864444.4677889999******************999999888*************666.********** PP -HHHHHTTSHH.HHHHHHHHHHHHHH CS CH 84 eaedlvegknk.svltllaqLfrafq 108 +++dl+e+kn +v ++++L r++q TRINITY_DN2_c0_g2_i2.p1 92 QTVDLWERKNIpQVTLCIHALGRVAQ 117 **********************9987 PP == domain 2 score: -1.5 bits; conditional E-value: 0.45 TSSTTSCHH.HHHTTSHHHH CS CH 20 pkvkvedfe.edlrDGvlLc 38 ++++df+ ++lr G + TRINITY_DN2_c0_g2_i2.p1 132 AEKQTRDFTeDQLREGRNVI 151 55677888877788887655 PP >> Calponin Calponin family repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.0 4.4 3.1e-13 1.8e-09 1 25 [] 151 174 .. 151 174 .. 0.98 Alignments for each domain: == domain 1 score: 37.0 bits; conditional E-value: 3.1e-13 Calponin 1 IgLQmGtNKgASQsGMtafGarRhI 25 I+LQ+G+NKgASQ+G + +G++R I TRINITY_DN2_c0_g2_i2.p1 151 ISLQYGSNKGASQAGIN-MGKQRMI 174 9****************.*****98 PP >> CAMSAP_CH CAMSAP CH domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 2.3e-05 0.14 14 68 .. 36 83 .. 26 97 .. 0.82 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 2.3e-05 CAMSAP_CH 14 edllrdlsdGvaLaalihfYcPqliklediclkesmsladslyNiqllqefcerk 68 ed+ l+dG+ L++l++ ++P i + i+ ++ + ++Ni+ +qe+++++ TRINITY_DN2_c0_g2_i2.p1 36 EDI---LKDGIVLCNLMNKLMPGCI--KKID--KKGGGFALMQNIERFQEAAKKY 83 555...89*****************..5577..7777788899999999998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (177 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 448 (0.0249875); expected 358.6 (0.02) Passed bias filter: 406 (0.0226449); expected 358.6 (0.02) Passed Vit filter: 36 (0.00200792); expected 17.9 (0.001) Passed Fwd filter: 3 (0.000167327); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.49s 00:00:00.85 Elapsed: 00:00:00.39 # Mc/sec: 1346.51 // Query: TRINITY_DN8_c0_g1_i2.p1 [L=407] Description: TRINITY_DN8_c0_g1~~TRINITY_DN8_c0_g1_i2.p1 ORF type:3prime_partial len:408 (+),score=371.43 TRINITY_DN8_c0_g1_i2:84-1304(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-69 233.6 0.0 3.7e-69 232.9 0.0 1.3 1 Tubulin Tubulin/FtsZ family, GTPase domain 5.3e-43 146.2 0.1 8.3e-43 145.6 0.1 1.3 1 Tubulin_C Tubulin C-terminal domain 1.5e-05 25.3 0.0 3.1e-05 24.3 0.0 1.5 1 Misat_Tub_SegII Misato Segment II tubulin-like domain 0.006 16.3 0.0 0.011 15.4 0.0 1.4 1 Tubulin_3 Tubulin domain ------ inclusion threshold ------ 0.014 14.6 0.1 0.029 13.6 0.0 1.5 2 Tubulin_2 Tubulin like Domain annotation for each model (and alignments): >> Tubulin Tubulin/FtsZ family, GTPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 232.9 0.0 1e-72 3.7e-69 1 196 [. 3 211 .. 3 212 .. 0.99 Alignments for each domain: == domain 1 score: 232.9 bits; conditional E-value: 1e-72 EEEEEEEHHHHHHHHHHHHH...HHHCH..............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........E CS Tubulin 1 eiivigvGqcGnqignelwellakehgiqsdg..........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpn 74 ei++i+ GqcGnqig ++we++ +ehgi+++g ++++++++e ++y+pr++++d++p +++++++g+ ++f+p+ TRINITY_DN8_c0_g1_i2.p1 3 EIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGtyhgdsdlqlERINVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPfgQIFRPD 88 79**************************98889******************999******************************** PP EEE--CCCCTTC--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.G CS Tubulin 75 klllgkegagnngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.e 159 ++++g++gagnn+a+g+++ g+e+ +++l+ +rke+e+cd+lqgf++t+slgGGTGSG+g++++++++eeyp+++++t++v+Ps + TRINITY_DN8_c0_g1_i2.p1 89 NFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSpK 174 ************************************************************************************** PP G.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCCS CS Tubulin 160 fsevvvepynailalkelieesdavividNdaLlkil 196 s+ vvepyna l++++l+e+ d + +idN+aL++i+ TRINITY_DN8_c0_g1_i2.p1 175 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 211 ************************************8 PP >> Tubulin_C Tubulin C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 145.6 0.1 2.3e-46 8.3e-43 1 125 [. 261 382 .. 261 383 .. 0.99 Alignments for each domain: == domain 1 score: 145.6 bits; conditional E-value: 2.3e-46 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTST CS Tubulin_C 1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWip 86 PrlhF++ ++aPl+s+ +++++ ++v ++t++++++kn+m+++dpr+g+yl++a+++rG++++kev++++ ++++k++++fveWip TRINITY_DN8_c0_g1_i2.p1 261 PRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346 9************************************************************************************* PP TTEEEEEEECECT-TTTSSCEEEEEEEEGGGHHHHHHHH CS Tubulin_C 87 tgikvalnkkspyvkkqskvsvlmlaNttsiaelfkrll 125 +++k+a+++ +p + k+s ++++N+t+i+elfkr++ TRINITY_DN8_c0_g1_i2.p1 347 NNVKTAVCDIPPRGLKMS---STFVGNSTAIQELFKRVS 382 ****************99...9***************86 PP >> Misat_Tub_SegII Misato Segment II tubulin-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.3 0.0 8.7e-09 3.1e-05 1 68 [. 2 71 .. 2 83 .. 0.73 Alignments for each domain: == domain 1 score: 24.3 bits; conditional E-value: 8.7e-09 Misat_Tub_SegII 1 rEivtlqlGnyaNyvgtHfWNtQesyftydeeeeesevdhdvlfre...getkqgqvtytPRllivDlkgs 68 rEiv +q G+ N +g+ fW + + d++ + d+d++ +++ + +y+PR+++vDl+ + TRINITY_DN8_c0_g1_i2.p1 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGT-YHGDSDLQLERinvYYNEATGGKYVPRAILVDLEPG 71 8********************9888887777777.44455544433111223567789*********9754 PP >> Tubulin_3 Tubulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 0.0 3e-06 0.011 64 113 .. 120 170 .. 101 237 .. 0.78 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 3e-06 Tubulin_3 64 lrpfaeecdqlrglqvftgvddaWG.GfaakylerlrdeygkksilvWvla 113 +r+ ae cd l+g+q+ + G G ++ + ++r+ey+ + + ++ + TRINITY_DN8_c0_g1_i2.p1 120 VRKEAESCDCLQGFQLTHSLGGGTGsGMGTLLISKIREEYPDRIMNTFSVV 170 6999***************99887769**************9987666543 PP >> Tubulin_2 Tubulin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 8e-06 0.029 160 203 .. 135 176 .. 104 191 .. 0.83 2 ? -3.2 0.0 1 3.8e+03 60 103 .. 308 347 .. 276 351 .. 0.59 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 8e-06 Tubulin_2 160 VvgSLaGGTGSGiflDvayllrkilkeekqkvkiiglvllPdvf 203 + SL GGTGSG+ ++ +r+++++ +++ +v++P+v TRINITY_DN8_c0_g1_i2.p1 135 LTHSLGGGTGSGMGTLLISKIREEYPDRIM--NTFSVVPSPKVS 176 567************************998..899999999996 PP == domain 2 score: -3.2 bits; conditional E-value: 1 Tubulin_2 60 geslksrekealsissaevdr.ilrnllreetasaypsieeWlpp 103 g++l+ ++++ +s +evd+ +l+ + +++++ eW+p+ TRINITY_DN8_c0_g1_i2.p1 308 GRYLTVAAMFRGRMSMKEVDEqMLNVQN-----KNSSYFVEWIPN 347 4444444444456666666541444442.....233456677765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (407 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 488 (0.0272185); expected 358.6 (0.02) Passed bias filter: 467 (0.0260472); expected 358.6 (0.02) Passed Vit filter: 37 (0.0020637); expected 17.9 (0.001) Passed Fwd filter: 5 (0.000278878); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.51u 0.45s 00:00:00.96 Elapsed: 00:00:00.42 # Mc/sec: 2922.95 // Query: TRINITY_DN8_c0_g1_i3.p1 [L=446] Description: TRINITY_DN8_c0_g1~~TRINITY_DN8_c0_g1_i3.p1 ORF type:complete len:446 (+),score=236.75 TRINITY_DN8_c0_g1_i3:61-1398(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-68 230.5 0.0 3.2e-68 229.8 0.0 1.3 1 Tubulin Tubulin/FtsZ family, GTPase domain 1.3e-43 148.1 0.1 2.1e-43 147.5 0.1 1.3 1 Tubulin_C Tubulin C-terminal domain 1e-05 25.8 0.0 2.8e-05 24.4 0.0 1.7 1 Misat_Tub_SegII Misato Segment II tubulin-like domain ------ inclusion threshold ------ 0.017 14.3 0.0 0.035 13.3 0.0 1.5 1 Tubulin_2 Tubulin like 0.021 14.5 0.0 0.041 13.5 0.0 1.5 1 Tubulin_3 Tubulin domain Domain annotation for each model (and alignments): >> Tubulin Tubulin/FtsZ family, GTPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 229.8 0.0 8.9e-72 3.2e-68 1 196 [. 3 211 .. 3 212 .. 0.99 Alignments for each domain: == domain 1 score: 229.8 bits; conditional E-value: 8.9e-72 EEEEEEEHHHHHHHHHHHHH...HHHCH..............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........E CS Tubulin 1 eiivigvGqcGnqignelwellakehgiqsdg..........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpn 74 ei++++ GqcGnqig ++we++ +ehgi+++g ++++++++e ++y+pr+v++d++p +++++++g+ ++f+p+ TRINITY_DN8_c0_g1_i3.p1 3 EIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGtyhgdsdlqlERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPfgQVFRPD 88 79**************************98889******************999******************************** PP EEE--CCCCTTC--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.G CS Tubulin 75 klllgkegagnngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.e 159 ++++g++gagnn+a+g+++ g+e+ +++l+ +rke e+cd+lqgf++t+slgGGTGSG+g++++++++eeyp+++++t++v+Ps + TRINITY_DN8_c0_g1_i3.p1 89 NFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSpK 174 ************************************************************************************** PP G.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCCS CS Tubulin 160 fsevvvepynailalkelieesdavividNdaLlkil 196 s+ vvepyna l++++l+e+ d + +idN+aL++i+ TRINITY_DN8_c0_g1_i3.p1 175 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 211 ************************************8 PP >> Tubulin_C Tubulin C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.5 0.1 5.9e-47 2.1e-43 1 125 [. 261 382 .. 261 383 .. 0.99 Alignments for each domain: == domain 1 score: 147.5 bits; conditional E-value: 5.9e-47 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTST CS Tubulin_C 1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWip 86 PrlhF++ ++aPl+s+ +++++ ++v ++t++++++kn+m+++dpr+g+yl++a+++rG++++kev++++ ++++k++++fveWip TRINITY_DN8_c0_g1_i3.p1 261 PRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346 9************************************************************************************* PP TTEEEEEEECECT-TTTSSCEEEEEEEEGGGHHHHHHHH CS Tubulin_C 87 tgikvalnkkspyvkkqskvsvlmlaNttsiaelfkrll 125 +++k+a+++ +p + k+s +++++N+t+i+elfkr++ TRINITY_DN8_c0_g1_i3.p1 347 NNVKTAVCDIPPRGLKMS---ATFIGNSTAIQELFKRIS 382 ****************99...****************96 PP >> Misat_Tub_SegII Misato Segment II tubulin-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.4 0.0 7.7e-09 2.8e-05 1 68 [. 2 71 .. 2 84 .. 0.74 Alignments for each domain: == domain 1 score: 24.4 bits; conditional E-value: 7.7e-09 Misat_Tub_SegII 1 rEivtlqlGnyaNyvgtHfWNtQesyftydeeeeesevdhdvlfre...getkqgqvtytPRllivDlkgs 68 rEiv lq G+ N +g+ fW + + d++ + d+d++ +++ + +y+PR+++vDl+ + TRINITY_DN8_c0_g1_i3.p1 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGT-YHGDSDLQLERinvYYNEATGGKYVPRAVLVDLEPG 71 8********************9888887777777.44455544433111223567789*********9754 PP >> Tubulin_2 Tubulin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 9.7e-06 0.035 161 203 .. 136 176 .. 105 191 .. 0.84 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 9.7e-06 Tubulin_2 161 vgSLaGGTGSGiflDvayllrkilkeekqkvkiiglvllPdvf 203 SL GGTGSG+ ++ +r+++++ +++ +v++P+v TRINITY_DN8_c0_g1_i3.p1 136 THSLGGGTGSGMGTLLISKIREEYPDRIM--NTFSVVPSPKVS 176 67************************998..899999999996 PP >> Tubulin_3 Tubulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 1.2e-05 0.041 64 112 .. 120 169 .. 103 236 .. 0.78 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 1.2e-05 Tubulin_3 64 lrpfaeecdqlrglqvftgvddaWG.GfaakylerlrdeygkksilvWvl 112 +r+ e cd l+g+q+ + G G ++ + ++r+ey+ + + ++ + TRINITY_DN8_c0_g1_i3.p1 120 VRKESESCDCLQGFQLTHSLGGGTGsGMGTLLISKIREEYPDRIMNTFSV 169 68889**************99887769**************998766654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (446 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 541 (0.0301746); expected 358.6 (0.02) Passed bias filter: 432 (0.024095); expected 358.6 (0.02) Passed Vit filter: 35 (0.00195214); expected 17.9 (0.001) Passed Fwd filter: 5 (0.000278878); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.51u 0.45s 00:00:00.96 Elapsed: 00:00:00.42 # Mc/sec: 3198.77 // Query: TRINITY_DN8_c0_g1_i4.p1 [L=106] Description: TRINITY_DN8_c0_g1~~TRINITY_DN8_c0_g1_i4.p1 ORF type:internal len:107 (+),score=79.75 TRINITY_DN8_c0_g1_i4:2-319(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-25 89.3 0.0 2.6e-25 89.0 0.0 1.1 1 Tubulin_C Tubulin C-terminal domain Domain annotation for each model (and alignments): >> Tubulin_C Tubulin C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 89.0 0.0 1.4e-29 2.6e-25 42 125 .. 1 81 [. 1 82 [. 0.98 Alignments for each domain: == domain 1 score: 89.0 bits; conditional E-value: 1.4e-29 STSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT-TTTSSCEEEEEEEEGGGHHHHHHHH CS Tubulin_C 42 kvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspyvkkqskvsvlmlaNttsiaelfkrll 125 ++dpr+g+yl++a+++rG++++kev++++ ++++k++++fveWip+++k+a+++ +p + k+s ++++N+t+i+elfkr++ TRINITY_DN8_c0_g1_i4.p1 1 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS---STFVGNSTAIQELFKRVS 81 59***********************************************************99...9***************86 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (106 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 512 (0.0285571); expected 358.6 (0.02) Passed bias filter: 397 (0.0221429); expected 358.6 (0.02) Passed Vit filter: 26 (0.00145016); expected 17.9 (0.001) Passed Fwd filter: 1 (5.57756e-05); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.36u 0.47s 00:00:00.83 Elapsed: 00:00:00.39 # Mc/sec: 808.40 // Query: TRINITY_DN8_c0_g1_i5.p1 [L=446] Description: TRINITY_DN8_c0_g1~~TRINITY_DN8_c0_g1_i5.p1 ORF type:complete len:446 (+),score=430.57 TRINITY_DN8_c0_g1_i5:84-1421(+) Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-69 233.3 0.0 4.6e-69 232.6 0.0 1.3 1 Tubulin Tubulin/FtsZ family, GTPase domain 2.7e-43 147.1 0.1 4.2e-43 146.5 0.1 1.3 1 Tubulin_C Tubulin C-terminal domain 1.4e-05 25.4 0.0 3.6e-05 24.1 0.0 1.7 1 Misat_Tub_SegII Misato Segment II tubulin-like domain 0.0067 16.1 0.0 0.013 15.2 0.0 1.5 1 Tubulin_3 Tubulin domain ------ inclusion threshold ------ 0.015 14.5 0.1 0.033 13.4 0.0 1.5 2 Tubulin_2 Tubulin like Domain annotation for each model (and alignments): >> Tubulin Tubulin/FtsZ family, GTPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 232.6 0.0 1.3e-72 4.6e-69 1 196 [. 3 211 .. 3 212 .. 0.99 Alignments for each domain: == domain 1 score: 232.6 bits; conditional E-value: 1.3e-72 EEEEEEEHHHHHHHHHHHHH...HHHCH..............HHHT.....TTEEEEE....EEESBHHHHHTS-GS........E CS Tubulin 1 eiivigvGqcGnqignelwellakehgiqsdg..........dslesfFsesgkveyiprsvaidtdpqvlneikags..elfnpn 74 ei++i+ GqcGnqig ++we++ +ehgi+++g ++++++++e ++y+pr++++d++p +++++++g+ ++f+p+ TRINITY_DN8_c0_g1_i5.p1 3 EIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGtyhgdsdlqlERINVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPfgQIFRPD 88 79**************************98889******************999******************************** PP EEE--CCCCTTC--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.G CS Tubulin 75 klllgkegagnngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.e 159 ++++g++gagnn+a+g+++ g+e+ +++l+ +rke+e+cd+lqgf++t+slgGGTGSG+g++++++++eeyp+++++t++v+Ps + TRINITY_DN8_c0_g1_i5.p1 89 NFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSpK 174 ************************************************************************************** PP G.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCCS CS Tubulin 160 fsevvvepynailalkelieesdavividNdaLlkil 196 s+ vvepyna l++++l+e+ d + +idN+aL++i+ TRINITY_DN8_c0_g1_i5.p1 175 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 211 ************************************8 PP >> Tubulin_C Tubulin C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 146.5 0.1 1.2e-46 4.2e-43 1 125 [. 261 382 .. 261 383 .. 0.99 Alignments for each domain: == domain 1 score: 146.5 bits; conditional E-value: 1.2e-46 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTST CS Tubulin_C 1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWip 86 PrlhF++ ++aPl+s+ +++++ ++v ++t++++++kn+m+++dpr+g+yl++a+++rG++++kev++++ ++++k++++fveWip TRINITY_DN8_c0_g1_i5.p1 261 PRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIP 346 9************************************************************************************* PP TTEEEEEEECECT-TTTSSCEEEEEEEEGGGHHHHHHHH CS Tubulin_C 87 tgikvalnkkspyvkkqskvsvlmlaNttsiaelfkrll 125 +++k+a+++ +p + k+s +++++N+t+i+elfkr++ TRINITY_DN8_c0_g1_i5.p1 347 NNVKTAVCDIPPRGLKMS---ATFVGNSTAIQELFKRIS 382 ****************99...****************96 PP >> Misat_Tub_SegII Misato Segment II tubulin-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.1 0.0 1e-08 3.6e-05 1 68 [. 2 71 .. 2 83 .. 0.73 Alignments for each domain: == domain 1 score: 24.1 bits; conditional E-value: 1e-08 Misat_Tub_SegII 1 rEivtlqlGnyaNyvgtHfWNtQesyftydeeeeesevdhdvlfre...getkqgqvtytPRllivDlkgs 68 rEiv +q G+ N +g+ fW + + d++ + d+d++ +++ + +y+PR+++vDl+ + TRINITY_DN8_c0_g1_i5.p1 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGT-YHGDSDLQLERinvYYNEATGGKYVPRAILVDLEPG 71 8********************9888887777777.44455544433111223567789*********9754 PP >> Tubulin_3 Tubulin domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 3.6e-06 0.013 64 112 .. 120 169 .. 101 236 .. 0.78 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 3.6e-06 Tubulin_3 64 lrpfaeecdqlrglqvftgvddaWG.GfaakylerlrdeygkksilvWvl 112 +r+ ae cd l+g+q+ + G G ++ + ++r+ey+ + + ++ + TRINITY_DN8_c0_g1_i5.p1 120 VRKEAESCDCLQGFQLTHSLGGGTGsGMGTLLISKIREEYPDRIMNTFSV 169 6999***************99887769**************998766654 PP >> Tubulin_2 Tubulin like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 9.2e-06 0.033 160 203 .. 135 176 .. 105 191 .. 0.83 2 ? -3.6 0.0 1.3 4.8e+03 61 103 .. 309 347 .. 285 351 .. 0.57 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 9.2e-06 Tubulin_2 160 VvgSLaGGTGSGiflDvayllrkilkeekqkvkiiglvllPdvf 203 + SL GGTGSG+ ++ +r+++++ +++ +v++P+v TRINITY_DN8_c0_g1_i5.p1 135 LTHSLGGGTGSGMGTLLISKIREEYPDRIM--NTFSVVPSPKVS 176 567************************998..899999999996 PP == domain 2 score: -3.6 bits; conditional E-value: 1.3 Tubulin_2 61 eslksrekealsissaevdr.ilrnllreetasaypsieeWlpp 103 ++l+ ++++ +s +evd+ +l+ + +++++ eW+p+ TRINITY_DN8_c0_g1_i5.p1 309 RYLTVAAMFRGRMSMKEVDEqMLNVQN-----KNSSYFVEWIPN 347 444555555556666666541444442.....233456677765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (446 residues searched) Target model(s): 17929 (3037991 nodes) Passed MSV filter: 570 (0.0317921); expected 358.6 (0.02) Passed bias filter: 423 (0.0235931); expected 358.6 (0.02) Passed Vit filter: 40 (0.00223102); expected 17.9 (0.001) Passed Fwd filter: 5 (0.000278878); expected 0.2 (1e-05) Initial search space (Z): 17929 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.46u 0.48s 00:00:00.94 Elapsed: 00:00:00.39 # Mc/sec: 3418.56 // [ok]