pp annotation~Helixer -c 8 -m 32 -l invertebrate_v0.3_m_0200.h5 -s 21384 input_1/parasite.fa PID: 913583 /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/pp 'annotation~Helixer' -c 8 -m 32 -l invertebrate_v0.3_m_0200.h5 -s 21384 input_1/parasite.fa Checking the realpath of input files. 1 script: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer Containers: biocontainers/emboss:v6.6.0dfsg-7b1-deb_cv1 c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 c2997108/helixer:v0.3.4_cuda_12.2.2-cudnn8 centos:centos6 quay.io/biocontainers/gffread:0.12.7--h9a82719_0 quay.io/biocontainers/seqkit:0.12.1--0 Checking singularity WARNING: passwd file doesn't exist in container, not updating WARNING: group file doesn't exist in container, not updating using singularity ++ set -o pipefail + set -eux + set -o pipefail ++ echo input_1/parasite.fa ++ grep '[.]gz$' ++ wc -l ++ true + '[' 0 = 1 ']' + awk '{if($0~"^>"){sub(/ .*/,"",$0)}; print $0}' input_1/parasite.fa + sed 's/\r//' + input_1=input_1/parasite.fa.ref.fa + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi --nv /home/yoshitake.kazutoshi/img/c2997108/helixer:v0.3.4_cuda_12.2.2-cudnn8 Helixer.py --fasta-path input_1/parasite.fa.ref.fa --gff-output-path helixer.gff3 --model-filepath /home/helixer_user/model/invertebrate_v0.3_m_0200.h5 --subsequence-length 21384 INFO: underlay of /etc/localtime required more than 50 (97) bind mounts INFO: underlay of /usr/bin/nvidia-smi required more than 50 (441) bind mounts 2025-02-11 14:43:44.425168: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. 2025-02-11 14:43:47.149951: E external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:9261] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered 2025-02-11 14:43:47.150109: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:607] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered 2025-02-11 14:43:47.684882: E external/local_xla/xla/stream_executor/cuda/cuda_blas.cc:1515] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered 2025-02-11 14:43:48.758697: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations. To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags. 2025-02-11 14:43:51.559551: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT /usr/local/lib/python3.10/dist-packages/tensorflow_addons/utils/tfa_eol_msg.py:23: UserWarning: TensorFlow Addons (TFA) has ended development and introduction of new features. TFA has entered a minimal maintenance and release mode until a planned end of life in May 2024. Please modify downstream libraries to take dependencies from other repositories in our TensorFlow community (e.g. Keras, Keras-CV, and Keras-NLP). For more information see: https://github.com/tensorflow/addons/issues/2807 warnings.warn( overriding the lineage based model, with the manually specified /home/helixer_user/model/invertebrate_v0.3_m_0200.h5 HelixerPost No config file found Helixer.py config: {'batch_size': 32, 'compression': 'gzip', 'config_path': 'config/helixer_config.yaml', 'debug': False, 'edge_threshold': 0.1, 'fasta_path': 'input_1/parasite.fa.ref.fa', 'gff_output_path': 'helixer.gff3', 'lineage': None, 'min_coding_length': 100, 'model_filepath': '/home/helixer_user/model/invertebrate_v0.3_m_0200.h5', 'no_multiprocess': False, 'no_overlap': False, 'overlap_core_length': 16038, 'overlap_offset': 10692, 'peak_threshold': 0.8, 'species': '', 'subsequence_length': 21384, 'temporary_dir': None, 'window_size': 100, 'write_by': 20000000} Testing whether helixer_post_bin is correctly installed Helixer.py config loaded. Starting FASTA to H5 conversion. storing temporary files under /tmp/tmpq3ctp7hh 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12553 of the sequence of contig_26 took 0.02 secs 1 Numerified Fasta only Coordinate (seqid: contig_26, len: 12553) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-48050 of the sequence of contig_58 took 0.02 secs 2 Numerified Fasta only Coordinate (seqid: contig_58, len: 48050) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4215 of the sequence of contig_74 took 0.00 secs 3 Numerified Fasta only Coordinate (seqid: contig_74, len: 4215) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-89794 of the sequence of contig_148 took 0.03 secs 4 Numerified Fasta only Coordinate (seqid: contig_148, len: 89794) in 0.06 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2957 of the sequence of contig_215 took 0.00 secs 5 Numerified Fasta only Coordinate (seqid: contig_215, len: 2957) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-31235 of the sequence of contig_222 took 0.01 secs 6 Numerified Fasta only Coordinate (seqid: contig_222, len: 31235) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-31861 of the sequence of contig_253 took 0.01 secs 7 Numerified Fasta only Coordinate (seqid: contig_253, len: 31861) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-80346 of the sequence of contig_303 took 0.03 secs 8 Numerified Fasta only Coordinate (seqid: contig_303, len: 80346) in 0.05 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-44782 of the sequence of contig_421 took 0.02 secs 9 Numerified Fasta only Coordinate (seqid: contig_421, len: 44782) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22641 of the sequence of contig_513 took 0.01 secs 10 Numerified Fasta only Coordinate (seqid: contig_513, len: 22641) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5013 of the sequence of contig_561 took 0.00 secs 11 Numerified Fasta only Coordinate (seqid: contig_561, len: 5013) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-101654 of the sequence of contig_769 took 0.04 secs 12 Numerified Fasta only Coordinate (seqid: contig_769, len: 101654) in 0.06 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6412 of the sequence of contig_810 took 0.00 secs 13 Numerified Fasta only Coordinate (seqid: contig_810, len: 6412) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22691 of the sequence of contig_875 took 0.01 secs 14 Numerified Fasta only Coordinate (seqid: contig_875, len: 22691) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5700 of the sequence of contig_948 took 0.00 secs 15 Numerified Fasta only Coordinate (seqid: contig_948, len: 5700) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13181 of the sequence of contig_994 took 0.01 secs 16 Numerified Fasta only Coordinate (seqid: contig_994, len: 13181) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-62302 of the sequence of contig_1019 took 0.02 secs 17 Numerified Fasta only Coordinate (seqid: contig_1019, len: 62302) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12105 of the sequence of contig_1021 took 0.00 secs 18 Numerified Fasta only Coordinate (seqid: contig_1021, len: 12105) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7399 of the sequence of contig_1070 took 0.00 secs 19 Numerified Fasta only Coordinate (seqid: contig_1070, len: 7399) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-83064 of the sequence of contig_1076 took 0.03 secs 20 Numerified Fasta only Coordinate (seqid: contig_1076, len: 83064) in 0.05 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-58417 of the sequence of contig_1084 took 0.02 secs 21 Numerified Fasta only Coordinate (seqid: contig_1084, len: 58417) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-41920 of the sequence of contig_1238 took 0.02 secs 22 Numerified Fasta only Coordinate (seqid: contig_1238, len: 41920) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10672 of the sequence of contig_1244 took 0.00 secs 23 Numerified Fasta only Coordinate (seqid: contig_1244, len: 10672) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-89934 of the sequence of contig_1246 took 0.03 secs 24 Numerified Fasta only Coordinate (seqid: contig_1246, len: 89934) in 0.06 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6591 of the sequence of contig_1263 took 0.00 secs 25 Numerified Fasta only Coordinate (seqid: contig_1263, len: 6591) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13550 of the sequence of contig_1264 took 0.01 secs 26 Numerified Fasta only Coordinate (seqid: contig_1264, len: 13550) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19368 of the sequence of contig_1265 took 0.01 secs 27 Numerified Fasta only Coordinate (seqid: contig_1265, len: 19368) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25953 of the sequence of contig_1276 took 0.01 secs 28 Numerified Fasta only Coordinate (seqid: contig_1276, len: 25953) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-31712 of the sequence of contig_1293 took 0.01 secs 29 Numerified Fasta only Coordinate (seqid: contig_1293, len: 31712) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25875 of the sequence of contig_1310 took 0.01 secs 30 Numerified Fasta only Coordinate (seqid: contig_1310, len: 25875) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18226 of the sequence of contig_1359 took 0.01 secs 31 Numerified Fasta only Coordinate (seqid: contig_1359, len: 18226) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-33432 of the sequence of contig_1360 took 0.01 secs 32 Numerified Fasta only Coordinate (seqid: contig_1360, len: 33432) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4514 of the sequence of contig_1364 took 0.00 secs 33 Numerified Fasta only Coordinate (seqid: contig_1364, len: 4514) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-29475 of the sequence of contig_1447 took 0.01 secs 34 Numerified Fasta only Coordinate (seqid: contig_1447, len: 29475) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-56816 of the sequence of contig_1515 took 0.02 secs 35 Numerified Fasta only Coordinate (seqid: contig_1515, len: 56816) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-93958 of the sequence of contig_1562 took 0.04 secs 36 Numerified Fasta only Coordinate (seqid: contig_1562, len: 93958) in 0.06 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11804 of the sequence of contig_1634 took 0.00 secs 37 Numerified Fasta only Coordinate (seqid: contig_1634, len: 11804) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5232 of the sequence of contig_1678 took 0.00 secs 38 Numerified Fasta only Coordinate (seqid: contig_1678, len: 5232) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10199 of the sequence of contig_1761 took 0.00 secs 39 Numerified Fasta only Coordinate (seqid: contig_1761, len: 10199) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10640 of the sequence of contig_1762 took 0.00 secs 40 Numerified Fasta only Coordinate (seqid: contig_1762, len: 10640) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8756 of the sequence of contig_1865 took 0.00 secs 41 Numerified Fasta only Coordinate (seqid: contig_1865, len: 8756) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9863 of the sequence of contig_1916 took 0.00 secs 42 Numerified Fasta only Coordinate (seqid: contig_1916, len: 9863) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-49711 of the sequence of contig_1930 took 0.02 secs 43 Numerified Fasta only Coordinate (seqid: contig_1930, len: 49711) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10562 of the sequence of contig_1943 took 0.00 secs 44 Numerified Fasta only Coordinate (seqid: contig_1943, len: 10562) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28012 of the sequence of contig_2034 took 0.01 secs 45 Numerified Fasta only Coordinate (seqid: contig_2034, len: 28012) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16418 of the sequence of contig_2259 took 0.01 secs 46 Numerified Fasta only Coordinate (seqid: contig_2259, len: 16418) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28136 of the sequence of contig_2266 took 0.01 secs 47 Numerified Fasta only Coordinate (seqid: contig_2266, len: 28136) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-26678 of the sequence of contig_2307 took 0.01 secs 48 Numerified Fasta only Coordinate (seqid: contig_2307, len: 26678) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7073 of the sequence of contig_2516 took 0.00 secs 49 Numerified Fasta only Coordinate (seqid: contig_2516, len: 7073) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8817 of the sequence of contig_2518 took 0.00 secs 50 Numerified Fasta only Coordinate (seqid: contig_2518, len: 8817) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6018 of the sequence of contig_2547 took 0.00 secs 51 Numerified Fasta only Coordinate (seqid: contig_2547, len: 6018) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-62836 of the sequence of contig_2553 took 0.03 secs 52 Numerified Fasta only Coordinate (seqid: contig_2553, len: 62836) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23145 of the sequence of contig_2587 took 0.01 secs 53 Numerified Fasta only Coordinate (seqid: contig_2587, len: 23145) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-29905 of the sequence of contig_2662 took 0.01 secs 54 Numerified Fasta only Coordinate (seqid: contig_2662, len: 29905) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3156 of the sequence of contig_2663 took 0.00 secs 55 Numerified Fasta only Coordinate (seqid: contig_2663, len: 3156) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3986 of the sequence of contig_2664 took 0.00 secs 56 Numerified Fasta only Coordinate (seqid: contig_2664, len: 3986) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-24932 of the sequence of contig_2665 took 0.01 secs 57 Numerified Fasta only Coordinate (seqid: contig_2665, len: 24932) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-43456 of the sequence of contig_2666 took 0.02 secs 58 Numerified Fasta only Coordinate (seqid: contig_2666, len: 43456) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18159 of the sequence of contig_2690 took 0.01 secs 59 Numerified Fasta only Coordinate (seqid: contig_2690, len: 18159) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20466 of the sequence of contig_2698 took 0.01 secs 60 Numerified Fasta only Coordinate (seqid: contig_2698, len: 20466) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18882 of the sequence of contig_2711 took 0.01 secs 61 Numerified Fasta only Coordinate (seqid: contig_2711, len: 18882) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6435 of the sequence of contig_2712 took 0.00 secs 62 Numerified Fasta only Coordinate (seqid: contig_2712, len: 6435) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3301 of the sequence of contig_2713 took 0.00 secs 63 Numerified Fasta only Coordinate (seqid: contig_2713, len: 3301) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5504 of the sequence of contig_2746 took 0.00 secs 64 Numerified Fasta only Coordinate (seqid: contig_2746, len: 5504) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-51896 of the sequence of contig_2762 took 0.02 secs 65 Numerified Fasta only Coordinate (seqid: contig_2762, len: 51896) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-34448 of the sequence of contig_2844 took 0.01 secs 66 Numerified Fasta only Coordinate (seqid: contig_2844, len: 34448) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3492 of the sequence of contig_3012 took 0.00 secs 67 Numerified Fasta only Coordinate (seqid: contig_3012, len: 3492) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23388 of the sequence of contig_3045 took 0.01 secs 68 Numerified Fasta only Coordinate (seqid: contig_3045, len: 23388) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22490 of the sequence of contig_3088 took 0.01 secs 69 Numerified Fasta only Coordinate (seqid: contig_3088, len: 22490) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21577 of the sequence of contig_3110 took 0.01 secs 70 Numerified Fasta only Coordinate (seqid: contig_3110, len: 21577) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7528 of the sequence of contig_3218 took 0.00 secs 71 Numerified Fasta only Coordinate (seqid: contig_3218, len: 7528) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9224 of the sequence of contig_3267 took 0.00 secs 72 Numerified Fasta only Coordinate (seqid: contig_3267, len: 9224) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2691 of the sequence of contig_3270 took 0.00 secs 73 Numerified Fasta only Coordinate (seqid: contig_3270, len: 2691) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19668 of the sequence of contig_3271 took 0.01 secs 74 Numerified Fasta only Coordinate (seqid: contig_3271, len: 19668) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15910 of the sequence of contig_3273 took 0.01 secs 75 Numerified Fasta only Coordinate (seqid: contig_3273, len: 15910) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-47864 of the sequence of contig_3360 took 0.02 secs 76 Numerified Fasta only Coordinate (seqid: contig_3360, len: 47864) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9989 of the sequence of contig_3361 took 0.00 secs 77 Numerified Fasta only Coordinate (seqid: contig_3361, len: 9989) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-87966 of the sequence of contig_3400 took 0.03 secs 78 Numerified Fasta only Coordinate (seqid: contig_3400, len: 87966) in 0.06 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-95405 of the sequence of contig_3439 took 0.04 secs 79 Numerified Fasta only Coordinate (seqid: contig_3439, len: 95405) in 0.07 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-30618 of the sequence of contig_3476 took 0.01 secs 80 Numerified Fasta only Coordinate (seqid: contig_3476, len: 30618) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-29875 of the sequence of contig_3481 took 0.01 secs 81 Numerified Fasta only Coordinate (seqid: contig_3481, len: 29875) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8964 of the sequence of contig_3489 took 0.00 secs 82 Numerified Fasta only Coordinate (seqid: contig_3489, len: 8964) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19512 of the sequence of contig_3559 took 0.01 secs 83 Numerified Fasta only Coordinate (seqid: contig_3559, len: 19512) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12255 of the sequence of contig_3587 took 0.00 secs 84 Numerified Fasta only Coordinate (seqid: contig_3587, len: 12255) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7738 of the sequence of contig_3730 took 0.00 secs 85 Numerified Fasta only Coordinate (seqid: contig_3730, len: 7738) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19614 of the sequence of contig_3736 took 0.01 secs 86 Numerified Fasta only Coordinate (seqid: contig_3736, len: 19614) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18667 of the sequence of contig_3759 took 0.01 secs 87 Numerified Fasta only Coordinate (seqid: contig_3759, len: 18667) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22952 of the sequence of contig_3797 took 0.01 secs 88 Numerified Fasta only Coordinate (seqid: contig_3797, len: 22952) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-39398 of the sequence of contig_3844 took 0.02 secs 89 Numerified Fasta only Coordinate (seqid: contig_3844, len: 39398) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3792 of the sequence of contig_3888 took 0.00 secs 90 Numerified Fasta only Coordinate (seqid: contig_3888, len: 3792) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-95963 of the sequence of contig_4005 took 0.04 secs 91 Numerified Fasta only Coordinate (seqid: contig_4005, len: 95963) in 0.06 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19471 of the sequence of contig_4009 took 0.01 secs 92 Numerified Fasta only Coordinate (seqid: contig_4009, len: 19471) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-32353 of the sequence of contig_4030 took 0.01 secs 93 Numerified Fasta only Coordinate (seqid: contig_4030, len: 32353) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-46114 of the sequence of contig_4040 took 0.02 secs 94 Numerified Fasta only Coordinate (seqid: contig_4040, len: 46114) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28232 of the sequence of contig_4091 took 0.01 secs 95 Numerified Fasta only Coordinate (seqid: contig_4091, len: 28232) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-29971 of the sequence of contig_4285 took 0.01 secs 96 Numerified Fasta only Coordinate (seqid: contig_4285, len: 29971) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3254 of the sequence of contig_4366 took 0.00 secs 97 Numerified Fasta only Coordinate (seqid: contig_4366, len: 3254) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-43693 of the sequence of contig_4613 took 0.02 secs 98 Numerified Fasta only Coordinate (seqid: contig_4613, len: 43693) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11559 of the sequence of contig_4759 took 0.00 secs 99 Numerified Fasta only Coordinate (seqid: contig_4759, len: 11559) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28557 of the sequence of contig_4760 took 0.01 secs 100 Numerified Fasta only Coordinate (seqid: contig_4760, len: 28557) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5233 of the sequence of contig_4763 took 0.00 secs 101 Numerified Fasta only Coordinate (seqid: contig_4763, len: 5233) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-151027 of the sequence of contig_4918 took 0.07 secs 102 Numerified Fasta only Coordinate (seqid: contig_4918, len: 151027) in 0.11 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-66749 of the sequence of contig_5096 took 0.03 secs 103 Numerified Fasta only Coordinate (seqid: contig_5096, len: 66749) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6473 of the sequence of contig_5108 took 0.00 secs 104 Numerified Fasta only Coordinate (seqid: contig_5108, len: 6473) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12651 of the sequence of contig_5164 took 0.00 secs 105 Numerified Fasta only Coordinate (seqid: contig_5164, len: 12651) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-36211 of the sequence of contig_5170 took 0.01 secs 106 Numerified Fasta only Coordinate (seqid: contig_5170, len: 36211) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23601 of the sequence of contig_5342 took 0.01 secs 107 Numerified Fasta only Coordinate (seqid: contig_5342, len: 23601) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5757 of the sequence of contig_5426 took 0.00 secs 108 Numerified Fasta only Coordinate (seqid: contig_5426, len: 5757) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17776 of the sequence of contig_5508 took 0.01 secs 109 Numerified Fasta only Coordinate (seqid: contig_5508, len: 17776) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14048 of the sequence of contig_5526 took 0.01 secs 110 Numerified Fasta only Coordinate (seqid: contig_5526, len: 14048) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-205720 of the sequence of contig_5544 took 0.08 secs 111 Numerified Fasta only Coordinate (seqid: contig_5544, len: 205720) in 0.13 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17980 of the sequence of contig_5549 took 0.01 secs 112 Numerified Fasta only Coordinate (seqid: contig_5549, len: 17980) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9393 of the sequence of contig_5576 took 0.00 secs 113 Numerified Fasta only Coordinate (seqid: contig_5576, len: 9393) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-37152 of the sequence of contig_5638 took 0.01 secs 114 Numerified Fasta only Coordinate (seqid: contig_5638, len: 37152) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6034 of the sequence of contig_5704 took 0.00 secs 115 Numerified Fasta only Coordinate (seqid: contig_5704, len: 6034) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-32967 of the sequence of contig_5800 took 0.01 secs 116 Numerified Fasta only Coordinate (seqid: contig_5800, len: 32967) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3809 of the sequence of contig_5804 took 0.00 secs 117 Numerified Fasta only Coordinate (seqid: contig_5804, len: 3809) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12774 of the sequence of contig_5862 took 0.00 secs 118 Numerified Fasta only Coordinate (seqid: contig_5862, len: 12774) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3800 of the sequence of contig_5891 took 0.00 secs 119 Numerified Fasta only Coordinate (seqid: contig_5891, len: 3800) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18253 of the sequence of contig_5965 took 0.01 secs 120 Numerified Fasta only Coordinate (seqid: contig_5965, len: 18253) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-50700 of the sequence of contig_6026 took 0.02 secs 121 Numerified Fasta only Coordinate (seqid: contig_6026, len: 50700) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2829 of the sequence of contig_6158 took 0.00 secs 122 Numerified Fasta only Coordinate (seqid: contig_6158, len: 2829) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17321 of the sequence of contig_6318 took 0.01 secs 123 Numerified Fasta only Coordinate (seqid: contig_6318, len: 17321) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-53534 of the sequence of contig_6382 took 0.02 secs 124 Numerified Fasta only Coordinate (seqid: contig_6382, len: 53534) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14394 of the sequence of contig_6387 took 0.01 secs 125 Numerified Fasta only Coordinate (seqid: contig_6387, len: 14394) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28313 of the sequence of contig_6466 took 0.01 secs 126 Numerified Fasta only Coordinate (seqid: contig_6466, len: 28313) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16809 of the sequence of contig_6622 took 0.01 secs 127 Numerified Fasta only Coordinate (seqid: contig_6622, len: 16809) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-31517 of the sequence of contig_6745 took 0.01 secs 128 Numerified Fasta only Coordinate (seqid: contig_6745, len: 31517) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11500 of the sequence of contig_6746 took 0.00 secs 129 Numerified Fasta only Coordinate (seqid: contig_6746, len: 11500) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7783 of the sequence of contig_6755 took 0.00 secs 130 Numerified Fasta only Coordinate (seqid: contig_6755, len: 7783) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4886 of the sequence of contig_6941 took 0.00 secs 131 Numerified Fasta only Coordinate (seqid: contig_6941, len: 4886) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12520 of the sequence of contig_7000 took 0.00 secs 132 Numerified Fasta only Coordinate (seqid: contig_7000, len: 12520) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11823 of the sequence of contig_7035 took 0.01 secs 133 Numerified Fasta only Coordinate (seqid: contig_7035, len: 11823) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25041 of the sequence of contig_7065 took 0.01 secs 134 Numerified Fasta only Coordinate (seqid: contig_7065, len: 25041) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-43600 of the sequence of contig_7090 took 0.02 secs 135 Numerified Fasta only Coordinate (seqid: contig_7090, len: 43600) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4820 of the sequence of contig_7198 took 0.00 secs 136 Numerified Fasta only Coordinate (seqid: contig_7198, len: 4820) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10275 of the sequence of contig_7301 took 0.00 secs 137 Numerified Fasta only Coordinate (seqid: contig_7301, len: 10275) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-31947 of the sequence of contig_7302 took 0.01 secs 138 Numerified Fasta only Coordinate (seqid: contig_7302, len: 31947) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-36291 of the sequence of contig_7351 took 0.01 secs 139 Numerified Fasta only Coordinate (seqid: contig_7351, len: 36291) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11817 of the sequence of contig_7377 took 0.01 secs 140 Numerified Fasta only Coordinate (seqid: contig_7377, len: 11817) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17224 of the sequence of contig_7498 took 0.01 secs 141 Numerified Fasta only Coordinate (seqid: contig_7498, len: 17224) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4105 of the sequence of contig_7820 took 0.00 secs 142 Numerified Fasta only Coordinate (seqid: contig_7820, len: 4105) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-83638 of the sequence of contig_7833 took 0.03 secs 143 Numerified Fasta only Coordinate (seqid: contig_7833, len: 83638) in 0.06 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-35408 of the sequence of contig_7883 took 0.02 secs 144 Numerified Fasta only Coordinate (seqid: contig_7883, len: 35408) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2889 of the sequence of contig_7958 took 0.00 secs 145 Numerified Fasta only Coordinate (seqid: contig_7958, len: 2889) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12287 of the sequence of contig_7965 took 0.01 secs 146 Numerified Fasta only Coordinate (seqid: contig_7965, len: 12287) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-68828 of the sequence of contig_8065 took 0.03 secs 147 Numerified Fasta only Coordinate (seqid: contig_8065, len: 68828) in 0.05 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13183 of the sequence of contig_8145 took 0.01 secs 148 Numerified Fasta only Coordinate (seqid: contig_8145, len: 13183) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10615 of the sequence of contig_8196 took 0.00 secs 149 Numerified Fasta only Coordinate (seqid: contig_8196, len: 10615) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16302 of the sequence of contig_8197 took 0.01 secs 150 Numerified Fasta only Coordinate (seqid: contig_8197, len: 16302) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18437 of the sequence of contig_8220 took 0.01 secs 151 Numerified Fasta only Coordinate (seqid: contig_8220, len: 18437) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15542 of the sequence of contig_8301 took 0.01 secs 152 Numerified Fasta only Coordinate (seqid: contig_8301, len: 15542) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-36495 of the sequence of contig_8500 took 0.01 secs 153 Numerified Fasta only Coordinate (seqid: contig_8500, len: 36495) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23628 of the sequence of contig_8567 took 0.01 secs 154 Numerified Fasta only Coordinate (seqid: contig_8567, len: 23628) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23732 of the sequence of contig_8657 took 0.01 secs 155 Numerified Fasta only Coordinate (seqid: contig_8657, len: 23732) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5751 of the sequence of contig_8696 took 0.00 secs 156 Numerified Fasta only Coordinate (seqid: contig_8696, len: 5751) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9740 of the sequence of contig_8742 took 0.00 secs 157 Numerified Fasta only Coordinate (seqid: contig_8742, len: 9740) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9174 of the sequence of contig_8857 took 0.00 secs 158 Numerified Fasta only Coordinate (seqid: contig_8857, len: 9174) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25059 of the sequence of contig_8887 took 0.01 secs 159 Numerified Fasta only Coordinate (seqid: contig_8887, len: 25059) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-161210 of the sequence of contig_9095 took 0.06 secs 160 Numerified Fasta only Coordinate (seqid: contig_9095, len: 161210) in 0.10 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-49877 of the sequence of contig_9099 took 0.02 secs 161 Numerified Fasta only Coordinate (seqid: contig_9099, len: 49877) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-66798 of the sequence of contig_9100 took 0.02 secs 162 Numerified Fasta only Coordinate (seqid: contig_9100, len: 66798) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12860 of the sequence of contig_9101 took 0.00 secs 163 Numerified Fasta only Coordinate (seqid: contig_9101, len: 12860) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20950 of the sequence of contig_9170 took 0.01 secs 164 Numerified Fasta only Coordinate (seqid: contig_9170, len: 20950) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4038 of the sequence of contig_9214 took 0.00 secs 165 Numerified Fasta only Coordinate (seqid: contig_9214, len: 4038) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-34347 of the sequence of contig_9220 took 0.01 secs 166 Numerified Fasta only Coordinate (seqid: contig_9220, len: 34347) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4400 of the sequence of contig_9221 took 0.00 secs 167 Numerified Fasta only Coordinate (seqid: contig_9221, len: 4400) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16428 of the sequence of contig_9222 took 0.01 secs 168 Numerified Fasta only Coordinate (seqid: contig_9222, len: 16428) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15073 of the sequence of contig_9223 took 0.01 secs 169 Numerified Fasta only Coordinate (seqid: contig_9223, len: 15073) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4637 of the sequence of contig_9224 took 0.00 secs 170 Numerified Fasta only Coordinate (seqid: contig_9224, len: 4637) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11315 of the sequence of contig_9281 took 0.00 secs 171 Numerified Fasta only Coordinate (seqid: contig_9281, len: 11315) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-78175 of the sequence of contig_9323 took 0.03 secs 172 Numerified Fasta only Coordinate (seqid: contig_9323, len: 78175) in 0.05 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-43655 of the sequence of contig_9414 took 0.02 secs 173 Numerified Fasta only Coordinate (seqid: contig_9414, len: 43655) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22077 of the sequence of contig_9468 took 0.01 secs 174 Numerified Fasta only Coordinate (seqid: contig_9468, len: 22077) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7153 of the sequence of contig_9484 took 0.00 secs 175 Numerified Fasta only Coordinate (seqid: contig_9484, len: 7153) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4916 of the sequence of contig_9579 took 0.00 secs 176 Numerified Fasta only Coordinate (seqid: contig_9579, len: 4916) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14739 of the sequence of contig_9615 took 0.01 secs 177 Numerified Fasta only Coordinate (seqid: contig_9615, len: 14739) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28833 of the sequence of contig_9712 took 0.01 secs 178 Numerified Fasta only Coordinate (seqid: contig_9712, len: 28833) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-32335 of the sequence of contig_9718 took 0.01 secs 179 Numerified Fasta only Coordinate (seqid: contig_9718, len: 32335) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3754 of the sequence of contig_9946 took 0.00 secs 180 Numerified Fasta only Coordinate (seqid: contig_9946, len: 3754) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10884 of the sequence of contig_10054 took 0.00 secs 181 Numerified Fasta only Coordinate (seqid: contig_10054, len: 10884) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8338 of the sequence of contig_10106 took 0.00 secs 182 Numerified Fasta only Coordinate (seqid: contig_10106, len: 8338) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-26481 of the sequence of contig_10107 took 0.01 secs 183 Numerified Fasta only Coordinate (seqid: contig_10107, len: 26481) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4342 of the sequence of contig_10120 took 0.00 secs 184 Numerified Fasta only Coordinate (seqid: contig_10120, len: 4342) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18089 of the sequence of contig_10132 took 0.01 secs 185 Numerified Fasta only Coordinate (seqid: contig_10132, len: 18089) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-46177 of the sequence of contig_10335 took 0.02 secs 186 Numerified Fasta only Coordinate (seqid: contig_10335, len: 46177) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28803 of the sequence of contig_10348 took 0.01 secs 187 Numerified Fasta only Coordinate (seqid: contig_10348, len: 28803) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10035 of the sequence of contig_10355 took 0.00 secs 188 Numerified Fasta only Coordinate (seqid: contig_10355, len: 10035) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12474 of the sequence of contig_10467 took 0.00 secs 189 Numerified Fasta only Coordinate (seqid: contig_10467, len: 12474) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-26277 of the sequence of contig_10506 took 0.01 secs 190 Numerified Fasta only Coordinate (seqid: contig_10506, len: 26277) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14662 of the sequence of contig_10512 took 0.01 secs 191 Numerified Fasta only Coordinate (seqid: contig_10512, len: 14662) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17436 of the sequence of contig_10564 took 0.01 secs 192 Numerified Fasta only Coordinate (seqid: contig_10564, len: 17436) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-39295 of the sequence of contig_10565 took 0.01 secs 193 Numerified Fasta only Coordinate (seqid: contig_10565, len: 39295) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10729 of the sequence of contig_10628 took 0.00 secs 194 Numerified Fasta only Coordinate (seqid: contig_10628, len: 10729) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15215 of the sequence of contig_10643 took 0.01 secs 195 Numerified Fasta only Coordinate (seqid: contig_10643, len: 15215) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4886 of the sequence of contig_10847 took 0.00 secs 196 Numerified Fasta only Coordinate (seqid: contig_10847, len: 4886) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-39904 of the sequence of contig_10872 took 0.01 secs 197 Numerified Fasta only Coordinate (seqid: contig_10872, len: 39904) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-37934 of the sequence of contig_10945 took 0.01 secs 198 Numerified Fasta only Coordinate (seqid: contig_10945, len: 37934) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-45548 of the sequence of contig_11026 took 0.02 secs 199 Numerified Fasta only Coordinate (seqid: contig_11026, len: 45548) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-52999 of the sequence of contig_11064 took 0.02 secs 200 Numerified Fasta only Coordinate (seqid: contig_11064, len: 52999) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22684 of the sequence of contig_11223 took 0.01 secs 201 Numerified Fasta only Coordinate (seqid: contig_11223, len: 22684) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3606 of the sequence of contig_11245 took 0.00 secs 202 Numerified Fasta only Coordinate (seqid: contig_11245, len: 3606) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-39765 of the sequence of contig_11248 took 0.01 secs 203 Numerified Fasta only Coordinate (seqid: contig_11248, len: 39765) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5827 of the sequence of contig_11267 took 0.00 secs 204 Numerified Fasta only Coordinate (seqid: contig_11267, len: 5827) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14377 of the sequence of contig_11272 took 0.01 secs 205 Numerified Fasta only Coordinate (seqid: contig_11272, len: 14377) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9575 of the sequence of contig_11289 took 0.00 secs 206 Numerified Fasta only Coordinate (seqid: contig_11289, len: 9575) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12831 of the sequence of contig_11295 took 0.00 secs 207 Numerified Fasta only Coordinate (seqid: contig_11295, len: 12831) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-32346 of the sequence of contig_11368 took 0.01 secs 208 Numerified Fasta only Coordinate (seqid: contig_11368, len: 32346) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14893 of the sequence of contig_11496 took 0.01 secs 209 Numerified Fasta only Coordinate (seqid: contig_11496, len: 14893) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4201 of the sequence of contig_11645 took 0.00 secs 210 Numerified Fasta only Coordinate (seqid: contig_11645, len: 4201) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-39648 of the sequence of contig_11772 took 0.01 secs 211 Numerified Fasta only Coordinate (seqid: contig_11772, len: 39648) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8531 of the sequence of contig_11795 took 0.00 secs 212 Numerified Fasta only Coordinate (seqid: contig_11795, len: 8531) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-52711 of the sequence of contig_11802 took 0.02 secs 213 Numerified Fasta only Coordinate (seqid: contig_11802, len: 52711) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-58089 of the sequence of contig_11841 took 0.02 secs 214 Numerified Fasta only Coordinate (seqid: contig_11841, len: 58089) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7921 of the sequence of contig_12002 took 0.00 secs 215 Numerified Fasta only Coordinate (seqid: contig_12002, len: 7921) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-74346 of the sequence of contig_12058 took 0.03 secs 216 Numerified Fasta only Coordinate (seqid: contig_12058, len: 74346) in 0.05 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-88001 of the sequence of contig_12091 took 0.03 secs 217 Numerified Fasta only Coordinate (seqid: contig_12091, len: 88001) in 0.05 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-102735 of the sequence of contig_12153 took 0.04 secs 218 Numerified Fasta only Coordinate (seqid: contig_12153, len: 102735) in 0.06 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14670 of the sequence of contig_12235 took 0.01 secs 219 Numerified Fasta only Coordinate (seqid: contig_12235, len: 14670) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21702 of the sequence of contig_12244 took 0.01 secs 220 Numerified Fasta only Coordinate (seqid: contig_12244, len: 21702) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14892 of the sequence of contig_12265 took 0.01 secs 221 Numerified Fasta only Coordinate (seqid: contig_12265, len: 14892) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13161 of the sequence of contig_12276 took 0.00 secs 222 Numerified Fasta only Coordinate (seqid: contig_12276, len: 13161) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-37187 of the sequence of contig_12278 took 0.01 secs 223 Numerified Fasta only Coordinate (seqid: contig_12278, len: 37187) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17089 of the sequence of contig_12310 took 0.01 secs 224 Numerified Fasta only Coordinate (seqid: contig_12310, len: 17089) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9362 of the sequence of contig_12334 took 0.00 secs 225 Numerified Fasta only Coordinate (seqid: contig_12334, len: 9362) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8038 of the sequence of contig_12404 took 0.00 secs 226 Numerified Fasta only Coordinate (seqid: contig_12404, len: 8038) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5266 of the sequence of contig_12443 took 0.00 secs 227 Numerified Fasta only Coordinate (seqid: contig_12443, len: 5266) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8564 of the sequence of contig_12448 took 0.00 secs 228 Numerified Fasta only Coordinate (seqid: contig_12448, len: 8564) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22058 of the sequence of contig_12478 took 0.01 secs 229 Numerified Fasta only Coordinate (seqid: contig_12478, len: 22058) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7489 of the sequence of contig_12479 took 0.00 secs 230 Numerified Fasta only Coordinate (seqid: contig_12479, len: 7489) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17874 of the sequence of contig_12486 took 0.01 secs 231 Numerified Fasta only Coordinate (seqid: contig_12486, len: 17874) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8001 of the sequence of contig_12690 took 0.00 secs 232 Numerified Fasta only Coordinate (seqid: contig_12690, len: 8001) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10529 of the sequence of contig_12852 took 0.00 secs 233 Numerified Fasta only Coordinate (seqid: contig_12852, len: 10529) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25995 of the sequence of contig_12886 took 0.01 secs 234 Numerified Fasta only Coordinate (seqid: contig_12886, len: 25995) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13126 of the sequence of contig_12902 took 0.00 secs 235 Numerified Fasta only Coordinate (seqid: contig_12902, len: 13126) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3889 of the sequence of contig_13246 took 0.00 secs 236 Numerified Fasta only Coordinate (seqid: contig_13246, len: 3889) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-35236 of the sequence of contig_13276 took 0.01 secs 237 Numerified Fasta only Coordinate (seqid: contig_13276, len: 35236) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10628 of the sequence of contig_13376 took 0.00 secs 238 Numerified Fasta only Coordinate (seqid: contig_13376, len: 10628) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12331 of the sequence of contig_13391 took 0.00 secs 239 Numerified Fasta only Coordinate (seqid: contig_13391, len: 12331) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25937 of the sequence of contig_13457 took 0.01 secs 240 Numerified Fasta only Coordinate (seqid: contig_13457, len: 25937) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-49660 of the sequence of contig_13472 took 0.02 secs 241 Numerified Fasta only Coordinate (seqid: contig_13472, len: 49660) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4462 of the sequence of contig_13511 took 0.00 secs 242 Numerified Fasta only Coordinate (seqid: contig_13511, len: 4462) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14155 of the sequence of contig_13632 took 0.01 secs 243 Numerified Fasta only Coordinate (seqid: contig_13632, len: 14155) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7224 of the sequence of contig_13644 took 0.00 secs 244 Numerified Fasta only Coordinate (seqid: contig_13644, len: 7224) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18651 of the sequence of contig_13738 took 0.01 secs 245 Numerified Fasta only Coordinate (seqid: contig_13738, len: 18651) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14442 of the sequence of contig_13802 took 0.01 secs 246 Numerified Fasta only Coordinate (seqid: contig_13802, len: 14442) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17589 of the sequence of contig_14014 took 0.01 secs 247 Numerified Fasta only Coordinate (seqid: contig_14014, len: 17589) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19292 of the sequence of contig_14040 took 0.01 secs 248 Numerified Fasta only Coordinate (seqid: contig_14040, len: 19292) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19539 of the sequence of contig_14186 took 0.01 secs 249 Numerified Fasta only Coordinate (seqid: contig_14186, len: 19539) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8047 of the sequence of contig_14238 took 0.00 secs 250 Numerified Fasta only Coordinate (seqid: contig_14238, len: 8047) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5136 of the sequence of contig_14291 took 0.00 secs 251 Numerified Fasta only Coordinate (seqid: contig_14291, len: 5136) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14525 of the sequence of contig_14387 took 0.01 secs 252 Numerified Fasta only Coordinate (seqid: contig_14387, len: 14525) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9887 of the sequence of contig_14445 took 0.00 secs 253 Numerified Fasta only Coordinate (seqid: contig_14445, len: 9887) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-59030 of the sequence of contig_14450 took 0.02 secs 254 Numerified Fasta only Coordinate (seqid: contig_14450, len: 59030) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15555 of the sequence of contig_14463 took 0.01 secs 255 Numerified Fasta only Coordinate (seqid: contig_14463, len: 15555) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9523 of the sequence of contig_14486 took 0.00 secs 256 Numerified Fasta only Coordinate (seqid: contig_14486, len: 9523) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10838 of the sequence of contig_14489 took 0.00 secs 257 Numerified Fasta only Coordinate (seqid: contig_14489, len: 10838) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4356 of the sequence of contig_14501 took 0.00 secs 258 Numerified Fasta only Coordinate (seqid: contig_14501, len: 4356) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13151 of the sequence of contig_14563 took 0.00 secs 259 Numerified Fasta only Coordinate (seqid: contig_14563, len: 13151) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15155 of the sequence of contig_14720 took 0.01 secs 260 Numerified Fasta only Coordinate (seqid: contig_14720, len: 15155) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5617 of the sequence of contig_14770 took 0.00 secs 261 Numerified Fasta only Coordinate (seqid: contig_14770, len: 5617) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14606 of the sequence of contig_14846 took 0.01 secs 262 Numerified Fasta only Coordinate (seqid: contig_14846, len: 14606) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8660 of the sequence of contig_14999 took 0.00 secs 263 Numerified Fasta only Coordinate (seqid: contig_14999, len: 8660) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16388 of the sequence of contig_15040 took 0.01 secs 264 Numerified Fasta only Coordinate (seqid: contig_15040, len: 16388) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-50283 of the sequence of contig_15108 took 0.02 secs 265 Numerified Fasta only Coordinate (seqid: contig_15108, len: 50283) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15440 of the sequence of contig_15166 took 0.01 secs 266 Numerified Fasta only Coordinate (seqid: contig_15166, len: 15440) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2594 of the sequence of contig_15168 took 0.00 secs 267 Numerified Fasta only Coordinate (seqid: contig_15168, len: 2594) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6027 of the sequence of contig_15202 took 0.00 secs 268 Numerified Fasta only Coordinate (seqid: contig_15202, len: 6027) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14113 of the sequence of contig_15275 took 0.01 secs 269 Numerified Fasta only Coordinate (seqid: contig_15275, len: 14113) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16011 of the sequence of contig_15426 took 0.01 secs 270 Numerified Fasta only Coordinate (seqid: contig_15426, len: 16011) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22178 of the sequence of contig_15487 took 0.01 secs 271 Numerified Fasta only Coordinate (seqid: contig_15487, len: 22178) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21227 of the sequence of contig_15555 took 0.01 secs 272 Numerified Fasta only Coordinate (seqid: contig_15555, len: 21227) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5805 of the sequence of contig_15624 took 0.00 secs 273 Numerified Fasta only Coordinate (seqid: contig_15624, len: 5805) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5105 of the sequence of contig_15739 took 0.00 secs 274 Numerified Fasta only Coordinate (seqid: contig_15739, len: 5105) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8771 of the sequence of contig_15789 took 0.00 secs 275 Numerified Fasta only Coordinate (seqid: contig_15789, len: 8771) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6126 of the sequence of contig_16125 took 0.00 secs 276 Numerified Fasta only Coordinate (seqid: contig_16125, len: 6126) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8365 of the sequence of contig_16149 took 0.00 secs 277 Numerified Fasta only Coordinate (seqid: contig_16149, len: 8365) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4974 of the sequence of contig_16223 took 0.00 secs 278 Numerified Fasta only Coordinate (seqid: contig_16223, len: 4974) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14409 of the sequence of contig_16257 took 0.01 secs 279 Numerified Fasta only Coordinate (seqid: contig_16257, len: 14409) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6863 of the sequence of contig_16286 took 0.00 secs 280 Numerified Fasta only Coordinate (seqid: contig_16286, len: 6863) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8156 of the sequence of contig_16294 took 0.00 secs 281 Numerified Fasta only Coordinate (seqid: contig_16294, len: 8156) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5418 of the sequence of contig_16340 took 0.00 secs 282 Numerified Fasta only Coordinate (seqid: contig_16340, len: 5418) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13020 of the sequence of contig_16345 took 0.01 secs 283 Numerified Fasta only Coordinate (seqid: contig_16345, len: 13020) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4102 of the sequence of contig_16446 took 0.00 secs 284 Numerified Fasta only Coordinate (seqid: contig_16446, len: 4102) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3423 of the sequence of contig_16498 took 0.00 secs 285 Numerified Fasta only Coordinate (seqid: contig_16498, len: 3423) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-37562 of the sequence of contig_16629 took 0.01 secs 286 Numerified Fasta only Coordinate (seqid: contig_16629, len: 37562) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9038 of the sequence of contig_16654 took 0.00 secs 287 Numerified Fasta only Coordinate (seqid: contig_16654, len: 9038) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10104 of the sequence of contig_16762 took 0.00 secs 288 Numerified Fasta only Coordinate (seqid: contig_16762, len: 10104) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10553 of the sequence of contig_16763 took 0.00 secs 289 Numerified Fasta only Coordinate (seqid: contig_16763, len: 10553) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-60143 of the sequence of contig_16824 took 0.02 secs 290 Numerified Fasta only Coordinate (seqid: contig_16824, len: 60143) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2867 of the sequence of contig_16825 took 0.00 secs 291 Numerified Fasta only Coordinate (seqid: contig_16825, len: 2867) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12793 of the sequence of contig_16831 took 0.00 secs 292 Numerified Fasta only Coordinate (seqid: contig_16831, len: 12793) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-36724 of the sequence of contig_16833 took 0.01 secs 293 Numerified Fasta only Coordinate (seqid: contig_16833, len: 36724) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13364 of the sequence of contig_16980 took 0.01 secs 294 Numerified Fasta only Coordinate (seqid: contig_16980, len: 13364) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-39877 of the sequence of contig_16982 took 0.02 secs 295 Numerified Fasta only Coordinate (seqid: contig_16982, len: 39877) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-44554 of the sequence of contig_17201 took 0.02 secs 296 Numerified Fasta only Coordinate (seqid: contig_17201, len: 44554) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-30046 of the sequence of contig_17215 took 0.01 secs 297 Numerified Fasta only Coordinate (seqid: contig_17215, len: 30046) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9060 of the sequence of contig_17216 took 0.00 secs 298 Numerified Fasta only Coordinate (seqid: contig_17216, len: 9060) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9044 of the sequence of contig_17234 took 0.00 secs 299 Numerified Fasta only Coordinate (seqid: contig_17234, len: 9044) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-29149 of the sequence of contig_17313 took 0.01 secs 300 Numerified Fasta only Coordinate (seqid: contig_17313, len: 29149) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-27111 of the sequence of contig_17319 took 0.01 secs 301 Numerified Fasta only Coordinate (seqid: contig_17319, len: 27111) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-26559 of the sequence of contig_17457 took 0.01 secs 302 Numerified Fasta only Coordinate (seqid: contig_17457, len: 26559) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-49645 of the sequence of contig_17521 took 0.02 secs 303 Numerified Fasta only Coordinate (seqid: contig_17521, len: 49645) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-66654 of the sequence of contig_17704 took 0.02 secs 304 Numerified Fasta only Coordinate (seqid: contig_17704, len: 66654) in 0.04 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16202 of the sequence of contig_17761 took 0.01 secs 305 Numerified Fasta only Coordinate (seqid: contig_17761, len: 16202) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7058 of the sequence of contig_17798 took 0.00 secs 306 Numerified Fasta only Coordinate (seqid: contig_17798, len: 7058) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8455 of the sequence of contig_17812 took 0.00 secs 307 Numerified Fasta only Coordinate (seqid: contig_17812, len: 8455) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20916 of the sequence of contig_17825 took 0.01 secs 308 Numerified Fasta only Coordinate (seqid: contig_17825, len: 20916) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11251 of the sequence of contig_17836 took 0.01 secs 309 Numerified Fasta only Coordinate (seqid: contig_17836, len: 11251) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5776 of the sequence of contig_17855 took 0.00 secs 310 Numerified Fasta only Coordinate (seqid: contig_17855, len: 5776) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7346 of the sequence of contig_17859 took 0.00 secs 311 Numerified Fasta only Coordinate (seqid: contig_17859, len: 7346) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7658 of the sequence of contig_18034 took 0.00 secs 312 Numerified Fasta only Coordinate (seqid: contig_18034, len: 7658) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6166 of the sequence of contig_18056 took 0.00 secs 313 Numerified Fasta only Coordinate (seqid: contig_18056, len: 6166) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6862 of the sequence of contig_18143 took 0.00 secs 314 Numerified Fasta only Coordinate (seqid: contig_18143, len: 6862) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8110 of the sequence of contig_18211 took 0.00 secs 315 Numerified Fasta only Coordinate (seqid: contig_18211, len: 8110) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10228 of the sequence of contig_18212 took 0.00 secs 316 Numerified Fasta only Coordinate (seqid: contig_18212, len: 10228) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-29435 of the sequence of contig_18292 took 0.01 secs 317 Numerified Fasta only Coordinate (seqid: contig_18292, len: 29435) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10489 of the sequence of contig_18381 took 0.00 secs 318 Numerified Fasta only Coordinate (seqid: contig_18381, len: 10489) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5187 of the sequence of contig_18429 took 0.00 secs 319 Numerified Fasta only Coordinate (seqid: contig_18429, len: 5187) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19962 of the sequence of contig_18430 took 0.01 secs 320 Numerified Fasta only Coordinate (seqid: contig_18430, len: 19962) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-30074 of the sequence of contig_18491 took 0.01 secs 321 Numerified Fasta only Coordinate (seqid: contig_18491, len: 30074) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-34942 of the sequence of contig_18492 took 0.01 secs 322 Numerified Fasta only Coordinate (seqid: contig_18492, len: 34942) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-47932 of the sequence of contig_18541 took 0.02 secs 323 Numerified Fasta only Coordinate (seqid: contig_18541, len: 47932) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8609 of the sequence of contig_18562 took 0.00 secs 324 Numerified Fasta only Coordinate (seqid: contig_18562, len: 8609) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2136 of the sequence of contig_18634 took 0.00 secs 325 Numerified Fasta only Coordinate (seqid: contig_18634, len: 2136) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6833 of the sequence of contig_18677 took 0.00 secs 326 Numerified Fasta only Coordinate (seqid: contig_18677, len: 6833) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11524 of the sequence of contig_18810 took 0.00 secs 327 Numerified Fasta only Coordinate (seqid: contig_18810, len: 11524) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16782 of the sequence of contig_18846 took 0.01 secs 328 Numerified Fasta only Coordinate (seqid: contig_18846, len: 16782) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11059 of the sequence of contig_18863 took 0.00 secs 329 Numerified Fasta only Coordinate (seqid: contig_18863, len: 11059) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10122 of the sequence of contig_18864 took 0.00 secs 330 Numerified Fasta only Coordinate (seqid: contig_18864, len: 10122) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14386 of the sequence of contig_18991 took 0.01 secs 331 Numerified Fasta only Coordinate (seqid: contig_18991, len: 14386) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18024 of the sequence of contig_19033 took 0.01 secs 332 Numerified Fasta only Coordinate (seqid: contig_19033, len: 18024) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9622 of the sequence of contig_19066 took 0.00 secs 333 Numerified Fasta only Coordinate (seqid: contig_19066, len: 9622) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11932 of the sequence of contig_19087 took 0.00 secs 334 Numerified Fasta only Coordinate (seqid: contig_19087, len: 11932) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20951 of the sequence of contig_19115 took 0.01 secs 335 Numerified Fasta only Coordinate (seqid: contig_19115, len: 20951) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7007 of the sequence of contig_19128 took 0.00 secs 336 Numerified Fasta only Coordinate (seqid: contig_19128, len: 7007) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11525 of the sequence of contig_19236 took 0.00 secs 337 Numerified Fasta only Coordinate (seqid: contig_19236, len: 11525) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18602 of the sequence of contig_19256 took 0.01 secs 338 Numerified Fasta only Coordinate (seqid: contig_19256, len: 18602) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10641 of the sequence of contig_19317 took 0.00 secs 339 Numerified Fasta only Coordinate (seqid: contig_19317, len: 10641) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8033 of the sequence of contig_19318 took 0.00 secs 340 Numerified Fasta only Coordinate (seqid: contig_19318, len: 8033) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17778 of the sequence of contig_19319 took 0.01 secs 341 Numerified Fasta only Coordinate (seqid: contig_19319, len: 17778) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6790 of the sequence of contig_19367 took 0.00 secs 342 Numerified Fasta only Coordinate (seqid: contig_19367, len: 6790) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-52132 of the sequence of contig_19369 took 0.02 secs 343 Numerified Fasta only Coordinate (seqid: contig_19369, len: 52132) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3329 of the sequence of contig_19441 took 0.00 secs 344 Numerified Fasta only Coordinate (seqid: contig_19441, len: 3329) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25804 of the sequence of contig_19545 took 0.01 secs 345 Numerified Fasta only Coordinate (seqid: contig_19545, len: 25804) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13325 of the sequence of contig_19938 took 0.00 secs 346 Numerified Fasta only Coordinate (seqid: contig_19938, len: 13325) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13018 of the sequence of contig_19985 took 0.00 secs 347 Numerified Fasta only Coordinate (seqid: contig_19985, len: 13018) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17747 of the sequence of contig_19997 took 0.01 secs 348 Numerified Fasta only Coordinate (seqid: contig_19997, len: 17747) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6345 of the sequence of contig_20058 took 0.00 secs 349 Numerified Fasta only Coordinate (seqid: contig_20058, len: 6345) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-38760 of the sequence of contig_20129 took 0.01 secs 350 Numerified Fasta only Coordinate (seqid: contig_20129, len: 38760) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11186 of the sequence of contig_20184 took 0.00 secs 351 Numerified Fasta only Coordinate (seqid: contig_20184, len: 11186) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3568 of the sequence of contig_20255 took 0.00 secs 352 Numerified Fasta only Coordinate (seqid: contig_20255, len: 3568) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4818 of the sequence of contig_20322 took 0.00 secs 353 Numerified Fasta only Coordinate (seqid: contig_20322, len: 4818) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20220 of the sequence of contig_20336 took 0.01 secs 354 Numerified Fasta only Coordinate (seqid: contig_20336, len: 20220) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3113 of the sequence of contig_20368 took 0.00 secs 355 Numerified Fasta only Coordinate (seqid: contig_20368, len: 3113) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7514 of the sequence of contig_20515 took 0.00 secs 356 Numerified Fasta only Coordinate (seqid: contig_20515, len: 7514) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15519 of the sequence of contig_20525 took 0.01 secs 357 Numerified Fasta only Coordinate (seqid: contig_20525, len: 15519) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-45145 of the sequence of contig_20695 took 0.02 secs 358 Numerified Fasta only Coordinate (seqid: contig_20695, len: 45145) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7448 of the sequence of contig_20789 took 0.00 secs 359 Numerified Fasta only Coordinate (seqid: contig_20789, len: 7448) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12069 of the sequence of contig_20869 took 0.00 secs 360 Numerified Fasta only Coordinate (seqid: contig_20869, len: 12069) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23574 of the sequence of contig_20918 took 0.01 secs 361 Numerified Fasta only Coordinate (seqid: contig_20918, len: 23574) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-26134 of the sequence of contig_20954 took 0.01 secs 362 Numerified Fasta only Coordinate (seqid: contig_20954, len: 26134) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21015 of the sequence of contig_21024 took 0.01 secs 363 Numerified Fasta only Coordinate (seqid: contig_21024, len: 21015) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8153 of the sequence of contig_21106 took 0.00 secs 364 Numerified Fasta only Coordinate (seqid: contig_21106, len: 8153) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11083 of the sequence of contig_21342 took 0.00 secs 365 Numerified Fasta only Coordinate (seqid: contig_21342, len: 11083) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9895 of the sequence of contig_21358 took 0.00 secs 366 Numerified Fasta only Coordinate (seqid: contig_21358, len: 9895) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21403 of the sequence of contig_21385 took 0.01 secs 367 Numerified Fasta only Coordinate (seqid: contig_21385, len: 21403) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16611 of the sequence of contig_21437 took 0.01 secs 368 Numerified Fasta only Coordinate (seqid: contig_21437, len: 16611) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-52690 of the sequence of contig_21440 took 0.02 secs 369 Numerified Fasta only Coordinate (seqid: contig_21440, len: 52690) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3987 of the sequence of contig_21588 took 0.00 secs 370 Numerified Fasta only Coordinate (seqid: contig_21588, len: 3987) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14075 of the sequence of contig_21918 took 0.01 secs 371 Numerified Fasta only Coordinate (seqid: contig_21918, len: 14075) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11335 of the sequence of contig_22017 took 0.00 secs 372 Numerified Fasta only Coordinate (seqid: contig_22017, len: 11335) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3372 of the sequence of contig_22076 took 0.00 secs 373 Numerified Fasta only Coordinate (seqid: contig_22076, len: 3372) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8601 of the sequence of contig_22086 took 0.00 secs 374 Numerified Fasta only Coordinate (seqid: contig_22086, len: 8601) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19675 of the sequence of contig_22119 took 0.01 secs 375 Numerified Fasta only Coordinate (seqid: contig_22119, len: 19675) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7546 of the sequence of contig_22265 took 0.00 secs 376 Numerified Fasta only Coordinate (seqid: contig_22265, len: 7546) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12487 of the sequence of contig_22387 took 0.00 secs 377 Numerified Fasta only Coordinate (seqid: contig_22387, len: 12487) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16394 of the sequence of contig_22394 took 0.01 secs 378 Numerified Fasta only Coordinate (seqid: contig_22394, len: 16394) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7635 of the sequence of contig_22591 took 0.00 secs 379 Numerified Fasta only Coordinate (seqid: contig_22591, len: 7635) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16971 of the sequence of contig_22637 took 0.01 secs 380 Numerified Fasta only Coordinate (seqid: contig_22637, len: 16971) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10126 of the sequence of contig_22638 took 0.00 secs 381 Numerified Fasta only Coordinate (seqid: contig_22638, len: 10126) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10597 of the sequence of contig_22653 took 0.00 secs 382 Numerified Fasta only Coordinate (seqid: contig_22653, len: 10597) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10400 of the sequence of contig_22670 took 0.00 secs 383 Numerified Fasta only Coordinate (seqid: contig_22670, len: 10400) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7792 of the sequence of contig_22951 took 0.00 secs 384 Numerified Fasta only Coordinate (seqid: contig_22951, len: 7792) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19772 of the sequence of contig_22962 took 0.01 secs 385 Numerified Fasta only Coordinate (seqid: contig_22962, len: 19772) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3672 of the sequence of contig_22998 took 0.00 secs 386 Numerified Fasta only Coordinate (seqid: contig_22998, len: 3672) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4760 of the sequence of contig_23074 took 0.00 secs 387 Numerified Fasta only Coordinate (seqid: contig_23074, len: 4760) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22274 of the sequence of contig_23125 took 0.01 secs 388 Numerified Fasta only Coordinate (seqid: contig_23125, len: 22274) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3155 of the sequence of contig_23146 took 0.00 secs 389 Numerified Fasta only Coordinate (seqid: contig_23146, len: 3155) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11620 of the sequence of contig_23283 took 0.00 secs 390 Numerified Fasta only Coordinate (seqid: contig_23283, len: 11620) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20124 of the sequence of contig_23398 took 0.01 secs 391 Numerified Fasta only Coordinate (seqid: contig_23398, len: 20124) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23424 of the sequence of contig_23612 took 0.01 secs 392 Numerified Fasta only Coordinate (seqid: contig_23612, len: 23424) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20289 of the sequence of contig_23761 took 0.01 secs 393 Numerified Fasta only Coordinate (seqid: contig_23761, len: 20289) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17865 of the sequence of contig_23843 took 0.01 secs 394 Numerified Fasta only Coordinate (seqid: contig_23843, len: 17865) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2233 of the sequence of contig_23911 took 0.00 secs 395 Numerified Fasta only Coordinate (seqid: contig_23911, len: 2233) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14768 of the sequence of contig_23922 took 0.01 secs 396 Numerified Fasta only Coordinate (seqid: contig_23922, len: 14768) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-26153 of the sequence of contig_23985 took 0.01 secs 397 Numerified Fasta only Coordinate (seqid: contig_23985, len: 26153) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11500 of the sequence of contig_23993 took 0.00 secs 398 Numerified Fasta only Coordinate (seqid: contig_23993, len: 11500) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7276 of the sequence of contig_24279 took 0.00 secs 399 Numerified Fasta only Coordinate (seqid: contig_24279, len: 7276) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8465 of the sequence of contig_24297 took 0.00 secs 400 Numerified Fasta only Coordinate (seqid: contig_24297, len: 8465) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16803 of the sequence of contig_24391 took 0.01 secs 401 Numerified Fasta only Coordinate (seqid: contig_24391, len: 16803) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3820 of the sequence of contig_24507 took 0.00 secs 402 Numerified Fasta only Coordinate (seqid: contig_24507, len: 3820) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-44980 of the sequence of contig_24519 took 0.02 secs 403 Numerified Fasta only Coordinate (seqid: contig_24519, len: 44980) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9844 of the sequence of contig_24591 took 0.00 secs 404 Numerified Fasta only Coordinate (seqid: contig_24591, len: 9844) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19666 of the sequence of contig_24594 took 0.01 secs 405 Numerified Fasta only Coordinate (seqid: contig_24594, len: 19666) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9382 of the sequence of contig_24656 took 0.00 secs 406 Numerified Fasta only Coordinate (seqid: contig_24656, len: 9382) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16868 of the sequence of contig_24698 took 0.01 secs 407 Numerified Fasta only Coordinate (seqid: contig_24698, len: 16868) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21909 of the sequence of contig_24749 took 0.01 secs 408 Numerified Fasta only Coordinate (seqid: contig_24749, len: 21909) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9399 of the sequence of contig_24777 took 0.00 secs 409 Numerified Fasta only Coordinate (seqid: contig_24777, len: 9399) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19280 of the sequence of contig_24819 took 0.01 secs 410 Numerified Fasta only Coordinate (seqid: contig_24819, len: 19280) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6351 of the sequence of contig_24820 took 0.00 secs 411 Numerified Fasta only Coordinate (seqid: contig_24820, len: 6351) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-41581 of the sequence of contig_24834 took 0.01 secs 412 Numerified Fasta only Coordinate (seqid: contig_24834, len: 41581) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-26228 of the sequence of contig_24838 took 0.01 secs 413 Numerified Fasta only Coordinate (seqid: contig_24838, len: 26228) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4150 of the sequence of contig_24889 took 0.00 secs 414 Numerified Fasta only Coordinate (seqid: contig_24889, len: 4150) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15644 of the sequence of contig_25033 took 0.01 secs 415 Numerified Fasta only Coordinate (seqid: contig_25033, len: 15644) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8316 of the sequence of contig_25099 took 0.00 secs 416 Numerified Fasta only Coordinate (seqid: contig_25099, len: 8316) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11291 of the sequence of contig_25111 took 0.00 secs 417 Numerified Fasta only Coordinate (seqid: contig_25111, len: 11291) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12570 of the sequence of contig_25330 took 0.00 secs 418 Numerified Fasta only Coordinate (seqid: contig_25330, len: 12570) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-24900 of the sequence of contig_25486 took 0.01 secs 419 Numerified Fasta only Coordinate (seqid: contig_25486, len: 24900) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-33108 of the sequence of contig_25574 took 0.01 secs 420 Numerified Fasta only Coordinate (seqid: contig_25574, len: 33108) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5902 of the sequence of contig_25898 took 0.00 secs 421 Numerified Fasta only Coordinate (seqid: contig_25898, len: 5902) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18202 of the sequence of contig_25939 took 0.01 secs 422 Numerified Fasta only Coordinate (seqid: contig_25939, len: 18202) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12520 of the sequence of contig_25964 took 0.00 secs 423 Numerified Fasta only Coordinate (seqid: contig_25964, len: 12520) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21948 of the sequence of contig_26053 took 0.01 secs 424 Numerified Fasta only Coordinate (seqid: contig_26053, len: 21948) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12952 of the sequence of contig_26122 took 0.00 secs 425 Numerified Fasta only Coordinate (seqid: contig_26122, len: 12952) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5548 of the sequence of contig_26249 took 0.00 secs 426 Numerified Fasta only Coordinate (seqid: contig_26249, len: 5548) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8350 of the sequence of contig_26271 took 0.00 secs 427 Numerified Fasta only Coordinate (seqid: contig_26271, len: 8350) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4619 of the sequence of contig_26433 took 0.00 secs 428 Numerified Fasta only Coordinate (seqid: contig_26433, len: 4619) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10475 of the sequence of contig_26451 took 0.00 secs 429 Numerified Fasta only Coordinate (seqid: contig_26451, len: 10475) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19219 of the sequence of contig_26452 took 0.01 secs 430 Numerified Fasta only Coordinate (seqid: contig_26452, len: 19219) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23150 of the sequence of contig_26499 took 0.01 secs 431 Numerified Fasta only Coordinate (seqid: contig_26499, len: 23150) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14472 of the sequence of contig_26700 took 0.01 secs 432 Numerified Fasta only Coordinate (seqid: contig_26700, len: 14472) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6974 of the sequence of contig_26899 took 0.00 secs 433 Numerified Fasta only Coordinate (seqid: contig_26899, len: 6974) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4920 of the sequence of contig_26948 took 0.00 secs 434 Numerified Fasta only Coordinate (seqid: contig_26948, len: 4920) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21246 of the sequence of contig_27079 took 0.01 secs 435 Numerified Fasta only Coordinate (seqid: contig_27079, len: 21246) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12165 of the sequence of contig_27171 took 0.00 secs 436 Numerified Fasta only Coordinate (seqid: contig_27171, len: 12165) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8768 of the sequence of contig_27223 took 0.00 secs 437 Numerified Fasta only Coordinate (seqid: contig_27223, len: 8768) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8221 of the sequence of contig_27315 took 0.00 secs 438 Numerified Fasta only Coordinate (seqid: contig_27315, len: 8221) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-36779 of the sequence of contig_27440 took 0.01 secs 439 Numerified Fasta only Coordinate (seqid: contig_27440, len: 36779) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3269 of the sequence of contig_27486 took 0.00 secs 440 Numerified Fasta only Coordinate (seqid: contig_27486, len: 3269) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6532 of the sequence of contig_27497 took 0.00 secs 441 Numerified Fasta only Coordinate (seqid: contig_27497, len: 6532) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6962 of the sequence of contig_27612 took 0.00 secs 442 Numerified Fasta only Coordinate (seqid: contig_27612, len: 6962) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7455 of the sequence of contig_27648 took 0.00 secs 443 Numerified Fasta only Coordinate (seqid: contig_27648, len: 7455) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4498 of the sequence of contig_27651 took 0.00 secs 444 Numerified Fasta only Coordinate (seqid: contig_27651, len: 4498) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5012 of the sequence of contig_27694 took 0.00 secs 445 Numerified Fasta only Coordinate (seqid: contig_27694, len: 5012) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19572 of the sequence of contig_27748 took 0.01 secs 446 Numerified Fasta only Coordinate (seqid: contig_27748, len: 19572) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6603 of the sequence of contig_27895 took 0.00 secs 447 Numerified Fasta only Coordinate (seqid: contig_27895, len: 6603) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14336 of the sequence of contig_28001 took 0.01 secs 448 Numerified Fasta only Coordinate (seqid: contig_28001, len: 14336) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13243 of the sequence of contig_28035 took 0.00 secs 449 Numerified Fasta only Coordinate (seqid: contig_28035, len: 13243) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22052 of the sequence of contig_28221 took 0.01 secs 450 Numerified Fasta only Coordinate (seqid: contig_28221, len: 22052) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19746 of the sequence of contig_28238 took 0.01 secs 451 Numerified Fasta only Coordinate (seqid: contig_28238, len: 19746) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9126 of the sequence of contig_28244 took 0.00 secs 452 Numerified Fasta only Coordinate (seqid: contig_28244, len: 9126) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8711 of the sequence of contig_28245 took 0.00 secs 453 Numerified Fasta only Coordinate (seqid: contig_28245, len: 8711) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9189 of the sequence of contig_28323 took 0.00 secs 454 Numerified Fasta only Coordinate (seqid: contig_28323, len: 9189) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7780 of the sequence of contig_28600 took 0.00 secs 455 Numerified Fasta only Coordinate (seqid: contig_28600, len: 7780) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6550 of the sequence of contig_28623 took 0.00 secs 456 Numerified Fasta only Coordinate (seqid: contig_28623, len: 6550) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6554 of the sequence of contig_28654 took 0.00 secs 457 Numerified Fasta only Coordinate (seqid: contig_28654, len: 6554) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25515 of the sequence of contig_28771 took 0.01 secs 458 Numerified Fasta only Coordinate (seqid: contig_28771, len: 25515) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4109 of the sequence of contig_28987 took 0.00 secs 459 Numerified Fasta only Coordinate (seqid: contig_28987, len: 4109) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15175 of the sequence of contig_28996 took 0.01 secs 460 Numerified Fasta only Coordinate (seqid: contig_28996, len: 15175) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9751 of the sequence of contig_29073 took 0.00 secs 461 Numerified Fasta only Coordinate (seqid: contig_29073, len: 9751) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12547 of the sequence of contig_29140 took 0.00 secs 462 Numerified Fasta only Coordinate (seqid: contig_29140, len: 12547) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12265 of the sequence of contig_29164 took 0.00 secs 463 Numerified Fasta only Coordinate (seqid: contig_29164, len: 12265) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-35528 of the sequence of contig_29362 took 0.01 secs 464 Numerified Fasta only Coordinate (seqid: contig_29362, len: 35528) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15238 of the sequence of contig_29368 took 0.01 secs 465 Numerified Fasta only Coordinate (seqid: contig_29368, len: 15238) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12093 of the sequence of contig_29372 took 0.00 secs 466 Numerified Fasta only Coordinate (seqid: contig_29372, len: 12093) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4068 of the sequence of contig_29531 took 0.00 secs 467 Numerified Fasta only Coordinate (seqid: contig_29531, len: 4068) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9415 of the sequence of contig_29542 took 0.00 secs 468 Numerified Fasta only Coordinate (seqid: contig_29542, len: 9415) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3901 of the sequence of contig_29587 took 0.00 secs 469 Numerified Fasta only Coordinate (seqid: contig_29587, len: 3901) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3746 of the sequence of contig_29732 took 0.00 secs 470 Numerified Fasta only Coordinate (seqid: contig_29732, len: 3746) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5507 of the sequence of contig_29753 took 0.00 secs 471 Numerified Fasta only Coordinate (seqid: contig_29753, len: 5507) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21621 of the sequence of contig_29933 took 0.01 secs 472 Numerified Fasta only Coordinate (seqid: contig_29933, len: 21621) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-30554 of the sequence of contig_30074 took 0.01 secs 473 Numerified Fasta only Coordinate (seqid: contig_30074, len: 30554) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13947 of the sequence of contig_30110 took 0.01 secs 474 Numerified Fasta only Coordinate (seqid: contig_30110, len: 13947) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13703 of the sequence of contig_30160 took 0.00 secs 475 Numerified Fasta only Coordinate (seqid: contig_30160, len: 13703) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4538 of the sequence of contig_30238 took 0.00 secs 476 Numerified Fasta only Coordinate (seqid: contig_30238, len: 4538) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4438 of the sequence of contig_30296 took 0.00 secs 477 Numerified Fasta only Coordinate (seqid: contig_30296, len: 4438) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-39021 of the sequence of contig_30342 took 0.01 secs 478 Numerified Fasta only Coordinate (seqid: contig_30342, len: 39021) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-24971 of the sequence of contig_30435 took 0.01 secs 479 Numerified Fasta only Coordinate (seqid: contig_30435, len: 24971) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8207 of the sequence of contig_30457 took 0.00 secs 480 Numerified Fasta only Coordinate (seqid: contig_30457, len: 8207) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19398 of the sequence of contig_30490 took 0.01 secs 481 Numerified Fasta only Coordinate (seqid: contig_30490, len: 19398) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2972 of the sequence of contig_30567 took 0.00 secs 482 Numerified Fasta only Coordinate (seqid: contig_30567, len: 2972) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28712 of the sequence of contig_30668 took 0.01 secs 483 Numerified Fasta only Coordinate (seqid: contig_30668, len: 28712) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5114 of the sequence of contig_30669 took 0.00 secs 484 Numerified Fasta only Coordinate (seqid: contig_30669, len: 5114) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16702 of the sequence of contig_30754 took 0.01 secs 485 Numerified Fasta only Coordinate (seqid: contig_30754, len: 16702) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9900 of the sequence of contig_30796 took 0.00 secs 486 Numerified Fasta only Coordinate (seqid: contig_30796, len: 9900) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11282 of the sequence of contig_30872 took 0.00 secs 487 Numerified Fasta only Coordinate (seqid: contig_30872, len: 11282) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13497 of the sequence of contig_31055 took 0.01 secs 488 Numerified Fasta only Coordinate (seqid: contig_31055, len: 13497) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11860 of the sequence of contig_31111 took 0.00 secs 489 Numerified Fasta only Coordinate (seqid: contig_31111, len: 11860) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6465 of the sequence of contig_31148 took 0.00 secs 490 Numerified Fasta only Coordinate (seqid: contig_31148, len: 6465) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10036 of the sequence of contig_31149 took 0.00 secs 491 Numerified Fasta only Coordinate (seqid: contig_31149, len: 10036) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-36938 of the sequence of contig_31413 took 0.01 secs 492 Numerified Fasta only Coordinate (seqid: contig_31413, len: 36938) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12128 of the sequence of contig_31424 took 0.00 secs 493 Numerified Fasta only Coordinate (seqid: contig_31424, len: 12128) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11811 of the sequence of contig_31504 took 0.00 secs 494 Numerified Fasta only Coordinate (seqid: contig_31504, len: 11811) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7894 of the sequence of contig_31652 took 0.00 secs 495 Numerified Fasta only Coordinate (seqid: contig_31652, len: 7894) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16565 of the sequence of contig_31794 took 0.01 secs 496 Numerified Fasta only Coordinate (seqid: contig_31794, len: 16565) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12309 of the sequence of contig_31961 took 0.00 secs 497 Numerified Fasta only Coordinate (seqid: contig_31961, len: 12309) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2672 of the sequence of contig_32103 took 0.00 secs 498 Numerified Fasta only Coordinate (seqid: contig_32103, len: 2672) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3985 of the sequence of contig_32203 took 0.00 secs 499 Numerified Fasta only Coordinate (seqid: contig_32203, len: 3985) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2929 of the sequence of contig_32230 took 0.00 secs 500 Numerified Fasta only Coordinate (seqid: contig_32230, len: 2929) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10219 of the sequence of contig_32281 took 0.00 secs 501 Numerified Fasta only Coordinate (seqid: contig_32281, len: 10219) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9186 of the sequence of contig_32389 took 0.00 secs 502 Numerified Fasta only Coordinate (seqid: contig_32389, len: 9186) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5166 of the sequence of contig_32482 took 0.00 secs 503 Numerified Fasta only Coordinate (seqid: contig_32482, len: 5166) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6859 of the sequence of contig_32722 took 0.00 secs 504 Numerified Fasta only Coordinate (seqid: contig_32722, len: 6859) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22088 of the sequence of contig_32735 took 0.01 secs 505 Numerified Fasta only Coordinate (seqid: contig_32735, len: 22088) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6521 of the sequence of contig_32736 took 0.00 secs 506 Numerified Fasta only Coordinate (seqid: contig_32736, len: 6521) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2475 of the sequence of contig_32749 took 0.00 secs 507 Numerified Fasta only Coordinate (seqid: contig_32749, len: 2475) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5814 of the sequence of contig_32955 took 0.00 secs 508 Numerified Fasta only Coordinate (seqid: contig_32955, len: 5814) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8414 of the sequence of contig_33098 took 0.00 secs 509 Numerified Fasta only Coordinate (seqid: contig_33098, len: 8414) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-24799 of the sequence of contig_33136 took 0.01 secs 510 Numerified Fasta only Coordinate (seqid: contig_33136, len: 24799) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17476 of the sequence of contig_33226 took 0.01 secs 511 Numerified Fasta only Coordinate (seqid: contig_33226, len: 17476) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4305 of the sequence of contig_33274 took 0.00 secs 512 Numerified Fasta only Coordinate (seqid: contig_33274, len: 4305) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18504 of the sequence of contig_33311 took 0.01 secs 513 Numerified Fasta only Coordinate (seqid: contig_33311, len: 18504) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-37215 of the sequence of contig_33313 took 0.01 secs 514 Numerified Fasta only Coordinate (seqid: contig_33313, len: 37215) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4209 of the sequence of contig_33329 took 0.00 secs 515 Numerified Fasta only Coordinate (seqid: contig_33329, len: 4209) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11602 of the sequence of contig_33331 took 0.00 secs 516 Numerified Fasta only Coordinate (seqid: contig_33331, len: 11602) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12637 of the sequence of contig_33338 took 0.00 secs 517 Numerified Fasta only Coordinate (seqid: contig_33338, len: 12637) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6229 of the sequence of contig_33395 took 0.00 secs 518 Numerified Fasta only Coordinate (seqid: contig_33395, len: 6229) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13022 of the sequence of contig_33396 took 0.00 secs 519 Numerified Fasta only Coordinate (seqid: contig_33396, len: 13022) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12108 of the sequence of contig_33402 took 0.00 secs 520 Numerified Fasta only Coordinate (seqid: contig_33402, len: 12108) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7120 of the sequence of contig_33607 took 0.00 secs 521 Numerified Fasta only Coordinate (seqid: contig_33607, len: 7120) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21968 of the sequence of contig_33678 took 0.01 secs 522 Numerified Fasta only Coordinate (seqid: contig_33678, len: 21968) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14949 of the sequence of contig_33727 took 0.01 secs 523 Numerified Fasta only Coordinate (seqid: contig_33727, len: 14949) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13247 of the sequence of contig_33765 took 0.01 secs 524 Numerified Fasta only Coordinate (seqid: contig_33765, len: 13247) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8737 of the sequence of contig_33793 took 0.00 secs 525 Numerified Fasta only Coordinate (seqid: contig_33793, len: 8737) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-38957 of the sequence of contig_33839 took 0.02 secs 526 Numerified Fasta only Coordinate (seqid: contig_33839, len: 38957) in 0.03 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8113 of the sequence of contig_33995 took 0.00 secs 527 Numerified Fasta only Coordinate (seqid: contig_33995, len: 8113) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3005 of the sequence of contig_34110 took 0.00 secs 528 Numerified Fasta only Coordinate (seqid: contig_34110, len: 3005) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9062 of the sequence of contig_34115 took 0.00 secs 529 Numerified Fasta only Coordinate (seqid: contig_34115, len: 9062) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8087 of the sequence of contig_34182 took 0.00 secs 530 Numerified Fasta only Coordinate (seqid: contig_34182, len: 8087) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12661 of the sequence of contig_34226 took 0.00 secs 531 Numerified Fasta only Coordinate (seqid: contig_34226, len: 12661) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5946 of the sequence of contig_34240 took 0.00 secs 532 Numerified Fasta only Coordinate (seqid: contig_34240, len: 5946) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11906 of the sequence of contig_34318 took 0.00 secs 533 Numerified Fasta only Coordinate (seqid: contig_34318, len: 11906) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5356 of the sequence of contig_34407 took 0.00 secs 534 Numerified Fasta only Coordinate (seqid: contig_34407, len: 5356) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-37133 of the sequence of contig_34485 took 0.01 secs 535 Numerified Fasta only Coordinate (seqid: contig_34485, len: 37133) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4611 of the sequence of contig_34509 took 0.00 secs 536 Numerified Fasta only Coordinate (seqid: contig_34509, len: 4611) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11771 of the sequence of contig_34510 took 0.00 secs 537 Numerified Fasta only Coordinate (seqid: contig_34510, len: 11771) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12516 of the sequence of contig_34522 took 0.00 secs 538 Numerified Fasta only Coordinate (seqid: contig_34522, len: 12516) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3411 of the sequence of contig_34591 took 0.00 secs 539 Numerified Fasta only Coordinate (seqid: contig_34591, len: 3411) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8676 of the sequence of contig_34709 took 0.00 secs 540 Numerified Fasta only Coordinate (seqid: contig_34709, len: 8676) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14858 of the sequence of contig_34784 took 0.01 secs 541 Numerified Fasta only Coordinate (seqid: contig_34784, len: 14858) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4563 of the sequence of contig_34884 took 0.00 secs 542 Numerified Fasta only Coordinate (seqid: contig_34884, len: 4563) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19285 of the sequence of contig_34916 took 0.01 secs 543 Numerified Fasta only Coordinate (seqid: contig_34916, len: 19285) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13400 of the sequence of contig_34988 took 0.00 secs 544 Numerified Fasta only Coordinate (seqid: contig_34988, len: 13400) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7677 of the sequence of contig_35101 took 0.00 secs 545 Numerified Fasta only Coordinate (seqid: contig_35101, len: 7677) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10567 of the sequence of contig_35156 took 0.00 secs 546 Numerified Fasta only Coordinate (seqid: contig_35156, len: 10567) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15258 of the sequence of contig_35220 took 0.01 secs 547 Numerified Fasta only Coordinate (seqid: contig_35220, len: 15258) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4812 of the sequence of contig_35342 took 0.00 secs 548 Numerified Fasta only Coordinate (seqid: contig_35342, len: 4812) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8064 of the sequence of contig_35391 took 0.00 secs 549 Numerified Fasta only Coordinate (seqid: contig_35391, len: 8064) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5798 of the sequence of contig_35478 took 0.00 secs 550 Numerified Fasta only Coordinate (seqid: contig_35478, len: 5798) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18663 of the sequence of contig_35492 took 0.01 secs 551 Numerified Fasta only Coordinate (seqid: contig_35492, len: 18663) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19317 of the sequence of contig_35532 took 0.01 secs 552 Numerified Fasta only Coordinate (seqid: contig_35532, len: 19317) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14442 of the sequence of contig_35607 took 0.01 secs 553 Numerified Fasta only Coordinate (seqid: contig_35607, len: 14442) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4152 of the sequence of contig_35678 took 0.00 secs 554 Numerified Fasta only Coordinate (seqid: contig_35678, len: 4152) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13223 of the sequence of contig_35702 took 0.00 secs 555 Numerified Fasta only Coordinate (seqid: contig_35702, len: 13223) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6979 of the sequence of contig_35721 took 0.00 secs 556 Numerified Fasta only Coordinate (seqid: contig_35721, len: 6979) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7942 of the sequence of contig_35840 took 0.00 secs 557 Numerified Fasta only Coordinate (seqid: contig_35840, len: 7942) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4995 of the sequence of contig_35954 took 0.00 secs 558 Numerified Fasta only Coordinate (seqid: contig_35954, len: 4995) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6163 of the sequence of contig_36200 took 0.00 secs 559 Numerified Fasta only Coordinate (seqid: contig_36200, len: 6163) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10010 of the sequence of contig_36254 took 0.00 secs 560 Numerified Fasta only Coordinate (seqid: contig_36254, len: 10010) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14654 of the sequence of contig_36319 took 0.01 secs 561 Numerified Fasta only Coordinate (seqid: contig_36319, len: 14654) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9940 of the sequence of contig_36483 took 0.00 secs 562 Numerified Fasta only Coordinate (seqid: contig_36483, len: 9940) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3825 of the sequence of contig_36606 took 0.00 secs 563 Numerified Fasta only Coordinate (seqid: contig_36606, len: 3825) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28706 of the sequence of contig_36682 took 0.01 secs 564 Numerified Fasta only Coordinate (seqid: contig_36682, len: 28706) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9411 of the sequence of contig_36700 took 0.00 secs 565 Numerified Fasta only Coordinate (seqid: contig_36700, len: 9411) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-24059 of the sequence of contig_36737 took 0.01 secs 566 Numerified Fasta only Coordinate (seqid: contig_36737, len: 24059) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3197 of the sequence of contig_36820 took 0.00 secs 567 Numerified Fasta only Coordinate (seqid: contig_36820, len: 3197) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11241 of the sequence of contig_36821 took 0.00 secs 568 Numerified Fasta only Coordinate (seqid: contig_36821, len: 11241) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8834 of the sequence of contig_36923 took 0.00 secs 569 Numerified Fasta only Coordinate (seqid: contig_36923, len: 8834) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-28402 of the sequence of contig_36947 took 0.01 secs 570 Numerified Fasta only Coordinate (seqid: contig_36947, len: 28402) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21003 of the sequence of contig_37079 took 0.01 secs 571 Numerified Fasta only Coordinate (seqid: contig_37079, len: 21003) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18623 of the sequence of contig_37234 took 0.01 secs 572 Numerified Fasta only Coordinate (seqid: contig_37234, len: 18623) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7463 of the sequence of contig_37263 took 0.00 secs 573 Numerified Fasta only Coordinate (seqid: contig_37263, len: 7463) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6721 of the sequence of contig_37312 took 0.00 secs 574 Numerified Fasta only Coordinate (seqid: contig_37312, len: 6721) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-26518 of the sequence of contig_37431 took 0.01 secs 575 Numerified Fasta only Coordinate (seqid: contig_37431, len: 26518) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13709 of the sequence of contig_37514 took 0.00 secs 576 Numerified Fasta only Coordinate (seqid: contig_37514, len: 13709) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17936 of the sequence of contig_37537 took 0.01 secs 577 Numerified Fasta only Coordinate (seqid: contig_37537, len: 17936) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6791 of the sequence of contig_37880 took 0.00 secs 578 Numerified Fasta only Coordinate (seqid: contig_37880, len: 6791) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6744 of the sequence of contig_38034 took 0.00 secs 579 Numerified Fasta only Coordinate (seqid: contig_38034, len: 6744) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8850 of the sequence of contig_38059 took 0.00 secs 580 Numerified Fasta only Coordinate (seqid: contig_38059, len: 8850) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-22058 of the sequence of contig_38088 took 0.01 secs 581 Numerified Fasta only Coordinate (seqid: contig_38088, len: 22058) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12151 of the sequence of contig_38120 took 0.00 secs 582 Numerified Fasta only Coordinate (seqid: contig_38120, len: 12151) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12635 of the sequence of contig_38342 took 0.00 secs 583 Numerified Fasta only Coordinate (seqid: contig_38342, len: 12635) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19274 of the sequence of contig_38388 took 0.01 secs 584 Numerified Fasta only Coordinate (seqid: contig_38388, len: 19274) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13402 of the sequence of contig_38597 took 0.00 secs 585 Numerified Fasta only Coordinate (seqid: contig_38597, len: 13402) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4825 of the sequence of contig_38777 took 0.00 secs 586 Numerified Fasta only Coordinate (seqid: contig_38777, len: 4825) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23871 of the sequence of contig_39211 took 0.01 secs 587 Numerified Fasta only Coordinate (seqid: contig_39211, len: 23871) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-25304 of the sequence of contig_39276 took 0.01 secs 588 Numerified Fasta only Coordinate (seqid: contig_39276, len: 25304) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7156 of the sequence of contig_39406 took 0.00 secs 589 Numerified Fasta only Coordinate (seqid: contig_39406, len: 7156) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8115 of the sequence of contig_39419 took 0.00 secs 590 Numerified Fasta only Coordinate (seqid: contig_39419, len: 8115) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12679 of the sequence of contig_39436 took 0.00 secs 591 Numerified Fasta only Coordinate (seqid: contig_39436, len: 12679) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13198 of the sequence of contig_39612 took 0.00 secs 592 Numerified Fasta only Coordinate (seqid: contig_39612, len: 13198) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20029 of the sequence of contig_39682 took 0.01 secs 593 Numerified Fasta only Coordinate (seqid: contig_39682, len: 20029) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2771 of the sequence of contig_39697 took 0.00 secs 594 Numerified Fasta only Coordinate (seqid: contig_39697, len: 2771) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14953 of the sequence of contig_39710 took 0.01 secs 595 Numerified Fasta only Coordinate (seqid: contig_39710, len: 14953) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16110 of the sequence of contig_39916 took 0.01 secs 596 Numerified Fasta only Coordinate (seqid: contig_39916, len: 16110) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6948 of the sequence of contig_40091 took 0.00 secs 597 Numerified Fasta only Coordinate (seqid: contig_40091, len: 6948) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3911 of the sequence of contig_40100 took 0.00 secs 598 Numerified Fasta only Coordinate (seqid: contig_40100, len: 3911) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16133 of the sequence of contig_40471 took 0.01 secs 599 Numerified Fasta only Coordinate (seqid: contig_40471, len: 16133) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12093 of the sequence of contig_40512 took 0.00 secs 600 Numerified Fasta only Coordinate (seqid: contig_40512, len: 12093) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8850 of the sequence of contig_40525 took 0.00 secs 601 Numerified Fasta only Coordinate (seqid: contig_40525, len: 8850) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4885 of the sequence of contig_40570 took 0.00 secs 602 Numerified Fasta only Coordinate (seqid: contig_40570, len: 4885) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18857 of the sequence of contig_40630 took 0.01 secs 603 Numerified Fasta only Coordinate (seqid: contig_40630, len: 18857) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5924 of the sequence of contig_40733 took 0.00 secs 604 Numerified Fasta only Coordinate (seqid: contig_40733, len: 5924) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10457 of the sequence of contig_41220 took 0.00 secs 605 Numerified Fasta only Coordinate (seqid: contig_41220, len: 10457) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6711 of the sequence of contig_41265 took 0.00 secs 606 Numerified Fasta only Coordinate (seqid: contig_41265, len: 6711) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11038 of the sequence of contig_41515 took 0.00 secs 607 Numerified Fasta only Coordinate (seqid: contig_41515, len: 11038) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3278 of the sequence of contig_41575 took 0.00 secs 608 Numerified Fasta only Coordinate (seqid: contig_41575, len: 3278) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8212 of the sequence of contig_41727 took 0.00 secs 609 Numerified Fasta only Coordinate (seqid: contig_41727, len: 8212) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7663 of the sequence of contig_41831 took 0.00 secs 610 Numerified Fasta only Coordinate (seqid: contig_41831, len: 7663) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12241 of the sequence of contig_41887 took 0.00 secs 611 Numerified Fasta only Coordinate (seqid: contig_41887, len: 12241) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2247 of the sequence of contig_41930 took 0.00 secs 612 Numerified Fasta only Coordinate (seqid: contig_41930, len: 2247) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7109 of the sequence of contig_41936 took 0.00 secs 613 Numerified Fasta only Coordinate (seqid: contig_41936, len: 7109) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13133 of the sequence of contig_42100 took 0.00 secs 614 Numerified Fasta only Coordinate (seqid: contig_42100, len: 13133) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10828 of the sequence of contig_42104 took 0.00 secs 615 Numerified Fasta only Coordinate (seqid: contig_42104, len: 10828) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19252 of the sequence of contig_42142 took 0.01 secs 616 Numerified Fasta only Coordinate (seqid: contig_42142, len: 19252) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10839 of the sequence of contig_42319 took 0.00 secs 617 Numerified Fasta only Coordinate (seqid: contig_42319, len: 10839) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-29978 of the sequence of contig_42364 took 0.01 secs 618 Numerified Fasta only Coordinate (seqid: contig_42364, len: 29978) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9060 of the sequence of contig_42398 took 0.00 secs 619 Numerified Fasta only Coordinate (seqid: contig_42398, len: 9060) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12422 of the sequence of contig_42668 took 0.00 secs 620 Numerified Fasta only Coordinate (seqid: contig_42668, len: 12422) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2703 of the sequence of contig_42688 took 0.00 secs 621 Numerified Fasta only Coordinate (seqid: contig_42688, len: 2703) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9264 of the sequence of contig_42724 took 0.00 secs 622 Numerified Fasta only Coordinate (seqid: contig_42724, len: 9264) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4100 of the sequence of contig_42987 took 0.00 secs 623 Numerified Fasta only Coordinate (seqid: contig_42987, len: 4100) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13767 of the sequence of contig_43235 took 0.01 secs 624 Numerified Fasta only Coordinate (seqid: contig_43235, len: 13767) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9654 of the sequence of contig_43437 took 0.00 secs 625 Numerified Fasta only Coordinate (seqid: contig_43437, len: 9654) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7154 of the sequence of contig_43547 took 0.00 secs 626 Numerified Fasta only Coordinate (seqid: contig_43547, len: 7154) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9087 of the sequence of contig_43618 took 0.00 secs 627 Numerified Fasta only Coordinate (seqid: contig_43618, len: 9087) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5747 of the sequence of contig_43765 took 0.00 secs 628 Numerified Fasta only Coordinate (seqid: contig_43765, len: 5747) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7640 of the sequence of contig_43912 took 0.00 secs 629 Numerified Fasta only Coordinate (seqid: contig_43912, len: 7640) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12261 of the sequence of contig_43976 took 0.01 secs 630 Numerified Fasta only Coordinate (seqid: contig_43976, len: 12261) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12381 of the sequence of contig_43977 took 0.01 secs 631 Numerified Fasta only Coordinate (seqid: contig_43977, len: 12381) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8243 of the sequence of contig_44025 took 0.00 secs 632 Numerified Fasta only Coordinate (seqid: contig_44025, len: 8243) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9956 of the sequence of contig_44193 took 0.00 secs 633 Numerified Fasta only Coordinate (seqid: contig_44193, len: 9956) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5675 of the sequence of contig_44240 took 0.00 secs 634 Numerified Fasta only Coordinate (seqid: contig_44240, len: 5675) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5530 of the sequence of contig_44328 took 0.00 secs 635 Numerified Fasta only Coordinate (seqid: contig_44328, len: 5530) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-23951 of the sequence of contig_44330 took 0.01 secs 636 Numerified Fasta only Coordinate (seqid: contig_44330, len: 23951) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16250 of the sequence of contig_44437 took 0.01 secs 637 Numerified Fasta only Coordinate (seqid: contig_44437, len: 16250) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2864 of the sequence of contig_44444 took 0.00 secs 638 Numerified Fasta only Coordinate (seqid: contig_44444, len: 2864) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6370 of the sequence of contig_44555 took 0.00 secs 639 Numerified Fasta only Coordinate (seqid: contig_44555, len: 6370) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5300 of the sequence of contig_44559 took 0.00 secs 640 Numerified Fasta only Coordinate (seqid: contig_44559, len: 5300) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10453 of the sequence of contig_44560 took 0.00 secs 641 Numerified Fasta only Coordinate (seqid: contig_44560, len: 10453) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5473 of the sequence of contig_44783 took 0.00 secs 642 Numerified Fasta only Coordinate (seqid: contig_44783, len: 5473) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11294 of the sequence of contig_45063 took 0.00 secs 643 Numerified Fasta only Coordinate (seqid: contig_45063, len: 11294) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10164 of the sequence of contig_45065 took 0.00 secs 644 Numerified Fasta only Coordinate (seqid: contig_45065, len: 10164) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3491 of the sequence of contig_45326 took 0.00 secs 645 Numerified Fasta only Coordinate (seqid: contig_45326, len: 3491) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4548 of the sequence of contig_45413 took 0.00 secs 646 Numerified Fasta only Coordinate (seqid: contig_45413, len: 4548) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4265 of the sequence of contig_45503 took 0.00 secs 647 Numerified Fasta only Coordinate (seqid: contig_45503, len: 4265) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10848 of the sequence of contig_45533 took 0.00 secs 648 Numerified Fasta only Coordinate (seqid: contig_45533, len: 10848) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13447 of the sequence of contig_45653 took 0.00 secs 649 Numerified Fasta only Coordinate (seqid: contig_45653, len: 13447) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9611 of the sequence of contig_45768 took 0.00 secs 650 Numerified Fasta only Coordinate (seqid: contig_45768, len: 9611) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10136 of the sequence of contig_45946 took 0.00 secs 651 Numerified Fasta only Coordinate (seqid: contig_45946, len: 10136) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7008 of the sequence of contig_46034 took 0.00 secs 652 Numerified Fasta only Coordinate (seqid: contig_46034, len: 7008) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3249 of the sequence of contig_46278 took 0.00 secs 653 Numerified Fasta only Coordinate (seqid: contig_46278, len: 3249) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16091 of the sequence of contig_46368 took 0.01 secs 654 Numerified Fasta only Coordinate (seqid: contig_46368, len: 16091) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8164 of the sequence of contig_46442 took 0.00 secs 655 Numerified Fasta only Coordinate (seqid: contig_46442, len: 8164) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8694 of the sequence of contig_46722 took 0.00 secs 656 Numerified Fasta only Coordinate (seqid: contig_46722, len: 8694) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3322 of the sequence of contig_46729 took 0.00 secs 657 Numerified Fasta only Coordinate (seqid: contig_46729, len: 3322) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16773 of the sequence of contig_46869 took 0.01 secs 658 Numerified Fasta only Coordinate (seqid: contig_46869, len: 16773) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2912 of the sequence of contig_47344 took 0.00 secs 659 Numerified Fasta only Coordinate (seqid: contig_47344, len: 2912) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6682 of the sequence of contig_47405 took 0.00 secs 660 Numerified Fasta only Coordinate (seqid: contig_47405, len: 6682) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8888 of the sequence of contig_47443 took 0.00 secs 661 Numerified Fasta only Coordinate (seqid: contig_47443, len: 8888) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4609 of the sequence of contig_47508 took 0.00 secs 662 Numerified Fasta only Coordinate (seqid: contig_47508, len: 4609) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3141 of the sequence of contig_47715 took 0.00 secs 663 Numerified Fasta only Coordinate (seqid: contig_47715, len: 3141) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8970 of the sequence of contig_48072 took 0.00 secs 664 Numerified Fasta only Coordinate (seqid: contig_48072, len: 8970) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4177 of the sequence of contig_48081 took 0.00 secs 665 Numerified Fasta only Coordinate (seqid: contig_48081, len: 4177) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20049 of the sequence of contig_48260 took 0.01 secs 666 Numerified Fasta only Coordinate (seqid: contig_48260, len: 20049) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-19241 of the sequence of contig_48310 took 0.01 secs 667 Numerified Fasta only Coordinate (seqid: contig_48310, len: 19241) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-1900 of the sequence of contig_48318 took 0.00 secs 668 Numerified Fasta only Coordinate (seqid: contig_48318, len: 1900) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2694 of the sequence of contig_48382 took 0.00 secs 669 Numerified Fasta only Coordinate (seqid: contig_48382, len: 2694) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5592 of the sequence of contig_48451 took 0.00 secs 670 Numerified Fasta only Coordinate (seqid: contig_48451, len: 5592) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10219 of the sequence of contig_48516 took 0.00 secs 671 Numerified Fasta only Coordinate (seqid: contig_48516, len: 10219) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6589 of the sequence of contig_48706 took 0.00 secs 672 Numerified Fasta only Coordinate (seqid: contig_48706, len: 6589) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7339 of the sequence of contig_48835 took 0.00 secs 673 Numerified Fasta only Coordinate (seqid: contig_48835, len: 7339) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3102 of the sequence of contig_49089 took 0.00 secs 674 Numerified Fasta only Coordinate (seqid: contig_49089, len: 3102) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-20833 of the sequence of contig_49100 took 0.01 secs 675 Numerified Fasta only Coordinate (seqid: contig_49100, len: 20833) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2662 of the sequence of contig_49112 took 0.00 secs 676 Numerified Fasta only Coordinate (seqid: contig_49112, len: 2662) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11396 of the sequence of contig_49247 took 0.00 secs 677 Numerified Fasta only Coordinate (seqid: contig_49247, len: 11396) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16314 of the sequence of contig_49264 took 0.01 secs 678 Numerified Fasta only Coordinate (seqid: contig_49264, len: 16314) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13836 of the sequence of contig_49356 took 0.00 secs 679 Numerified Fasta only Coordinate (seqid: contig_49356, len: 13836) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4113 of the sequence of contig_49507 took 0.00 secs 680 Numerified Fasta only Coordinate (seqid: contig_49507, len: 4113) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10876 of the sequence of contig_49557 took 0.00 secs 681 Numerified Fasta only Coordinate (seqid: contig_49557, len: 10876) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2355 of the sequence of contig_49630 took 0.00 secs 682 Numerified Fasta only Coordinate (seqid: contig_49630, len: 2355) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6409 of the sequence of contig_49675 took 0.00 secs 683 Numerified Fasta only Coordinate (seqid: contig_49675, len: 6409) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10397 of the sequence of contig_49692 took 0.00 secs 684 Numerified Fasta only Coordinate (seqid: contig_49692, len: 10397) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5336 of the sequence of contig_49835 took 0.00 secs 685 Numerified Fasta only Coordinate (seqid: contig_49835, len: 5336) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4556 of the sequence of contig_49985 took 0.00 secs 686 Numerified Fasta only Coordinate (seqid: contig_49985, len: 4556) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2711 of the sequence of contig_50069 took 0.00 secs 687 Numerified Fasta only Coordinate (seqid: contig_50069, len: 2711) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10853 of the sequence of contig_50144 took 0.00 secs 688 Numerified Fasta only Coordinate (seqid: contig_50144, len: 10853) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13418 of the sequence of contig_50342 took 0.00 secs 689 Numerified Fasta only Coordinate (seqid: contig_50342, len: 13418) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8441 of the sequence of contig_50590 took 0.00 secs 690 Numerified Fasta only Coordinate (seqid: contig_50590, len: 8441) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4031 of the sequence of contig_50653 took 0.00 secs 691 Numerified Fasta only Coordinate (seqid: contig_50653, len: 4031) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4333 of the sequence of contig_50734 took 0.00 secs 692 Numerified Fasta only Coordinate (seqid: contig_50734, len: 4333) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3235 of the sequence of contig_50750 took 0.00 secs 693 Numerified Fasta only Coordinate (seqid: contig_50750, len: 3235) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-21198 of the sequence of contig_50905 took 0.01 secs 694 Numerified Fasta only Coordinate (seqid: contig_50905, len: 21198) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5149 of the sequence of contig_50926 took 0.00 secs 695 Numerified Fasta only Coordinate (seqid: contig_50926, len: 5149) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6468 of the sequence of contig_51035 took 0.00 secs 696 Numerified Fasta only Coordinate (seqid: contig_51035, len: 6468) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8845 of the sequence of contig_51143 took 0.00 secs 697 Numerified Fasta only Coordinate (seqid: contig_51143, len: 8845) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14789 of the sequence of contig_51156 took 0.01 secs 698 Numerified Fasta only Coordinate (seqid: contig_51156, len: 14789) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4759 of the sequence of contig_51211 took 0.00 secs 699 Numerified Fasta only Coordinate (seqid: contig_51211, len: 4759) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2868 of the sequence of contig_51254 took 0.00 secs 700 Numerified Fasta only Coordinate (seqid: contig_51254, len: 2868) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2592 of the sequence of contig_51489 took 0.00 secs 701 Numerified Fasta only Coordinate (seqid: contig_51489, len: 2592) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8421 of the sequence of contig_51572 took 0.00 secs 702 Numerified Fasta only Coordinate (seqid: contig_51572, len: 8421) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15713 of the sequence of contig_51621 took 0.01 secs 703 Numerified Fasta only Coordinate (seqid: contig_51621, len: 15713) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2545 of the sequence of contig_51629 took 0.00 secs 704 Numerified Fasta only Coordinate (seqid: contig_51629, len: 2545) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12149 of the sequence of contig_51630 took 0.00 secs 705 Numerified Fasta only Coordinate (seqid: contig_51630, len: 12149) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4637 of the sequence of contig_51669 took 0.00 secs 706 Numerified Fasta only Coordinate (seqid: contig_51669, len: 4637) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3299 of the sequence of contig_51673 took 0.00 secs 707 Numerified Fasta only Coordinate (seqid: contig_51673, len: 3299) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7279 of the sequence of contig_51756 took 0.00 secs 708 Numerified Fasta only Coordinate (seqid: contig_51756, len: 7279) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12447 of the sequence of contig_51794 took 0.00 secs 709 Numerified Fasta only Coordinate (seqid: contig_51794, len: 12447) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17607 of the sequence of contig_52041 took 0.01 secs 710 Numerified Fasta only Coordinate (seqid: contig_52041, len: 17607) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16506 of the sequence of contig_52102 took 0.01 secs 711 Numerified Fasta only Coordinate (seqid: contig_52102, len: 16506) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4988 of the sequence of contig_52178 took 0.00 secs 712 Numerified Fasta only Coordinate (seqid: contig_52178, len: 4988) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8260 of the sequence of contig_52193 took 0.00 secs 713 Numerified Fasta only Coordinate (seqid: contig_52193, len: 8260) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7563 of the sequence of contig_52341 took 0.00 secs 714 Numerified Fasta only Coordinate (seqid: contig_52341, len: 7563) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7969 of the sequence of contig_52426 took 0.00 secs 715 Numerified Fasta only Coordinate (seqid: contig_52426, len: 7969) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6127 of the sequence of contig_52492 took 0.00 secs 716 Numerified Fasta only Coordinate (seqid: contig_52492, len: 6127) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2268 of the sequence of contig_52515 took 0.00 secs 717 Numerified Fasta only Coordinate (seqid: contig_52515, len: 2268) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4169 of the sequence of contig_52581 took 0.00 secs 718 Numerified Fasta only Coordinate (seqid: contig_52581, len: 4169) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5496 of the sequence of contig_52659 took 0.00 secs 719 Numerified Fasta only Coordinate (seqid: contig_52659, len: 5496) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9982 of the sequence of contig_52663 took 0.00 secs 720 Numerified Fasta only Coordinate (seqid: contig_52663, len: 9982) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9624 of the sequence of contig_52738 took 0.00 secs 721 Numerified Fasta only Coordinate (seqid: contig_52738, len: 9624) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3244 of the sequence of contig_52746 took 0.00 secs 722 Numerified Fasta only Coordinate (seqid: contig_52746, len: 3244) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2979 of the sequence of contig_52879 took 0.00 secs 723 Numerified Fasta only Coordinate (seqid: contig_52879, len: 2979) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13359 of the sequence of contig_52935 took 0.00 secs 724 Numerified Fasta only Coordinate (seqid: contig_52935, len: 13359) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3582 of the sequence of contig_52957 took 0.00 secs 725 Numerified Fasta only Coordinate (seqid: contig_52957, len: 3582) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3960 of the sequence of contig_53133 took 0.00 secs 726 Numerified Fasta only Coordinate (seqid: contig_53133, len: 3960) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4893 of the sequence of contig_53258 took 0.00 secs 727 Numerified Fasta only Coordinate (seqid: contig_53258, len: 4893) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5389 of the sequence of contig_53279 took 0.00 secs 728 Numerified Fasta only Coordinate (seqid: contig_53279, len: 5389) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6703 of the sequence of contig_53294 took 0.00 secs 729 Numerified Fasta only Coordinate (seqid: contig_53294, len: 6703) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9767 of the sequence of contig_53321 took 0.00 secs 730 Numerified Fasta only Coordinate (seqid: contig_53321, len: 9767) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16881 of the sequence of contig_53333 took 0.01 secs 731 Numerified Fasta only Coordinate (seqid: contig_53333, len: 16881) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4351 of the sequence of contig_53334 took 0.00 secs 732 Numerified Fasta only Coordinate (seqid: contig_53334, len: 4351) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8054 of the sequence of contig_53375 took 0.00 secs 733 Numerified Fasta only Coordinate (seqid: contig_53375, len: 8054) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6490 of the sequence of contig_53508 took 0.00 secs 734 Numerified Fasta only Coordinate (seqid: contig_53508, len: 6490) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3884 of the sequence of contig_53606 took 0.00 secs 735 Numerified Fasta only Coordinate (seqid: contig_53606, len: 3884) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3449 of the sequence of contig_53641 took 0.00 secs 736 Numerified Fasta only Coordinate (seqid: contig_53641, len: 3449) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2857 of the sequence of contig_53675 took 0.00 secs 737 Numerified Fasta only Coordinate (seqid: contig_53675, len: 2857) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6187 of the sequence of contig_54018 took 0.00 secs 738 Numerified Fasta only Coordinate (seqid: contig_54018, len: 6187) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-14527 of the sequence of contig_54434 took 0.01 secs 739 Numerified Fasta only Coordinate (seqid: contig_54434, len: 14527) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5144 of the sequence of contig_54608 took 0.00 secs 740 Numerified Fasta only Coordinate (seqid: contig_54608, len: 5144) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13545 of the sequence of contig_54710 took 0.00 secs 741 Numerified Fasta only Coordinate (seqid: contig_54710, len: 13545) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3678 of the sequence of contig_54794 took 0.00 secs 742 Numerified Fasta only Coordinate (seqid: contig_54794, len: 3678) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4727 of the sequence of contig_54805 took 0.00 secs 743 Numerified Fasta only Coordinate (seqid: contig_54805, len: 4727) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7454 of the sequence of contig_54921 took 0.00 secs 744 Numerified Fasta only Coordinate (seqid: contig_54921, len: 7454) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5563 of the sequence of contig_54931 took 0.00 secs 745 Numerified Fasta only Coordinate (seqid: contig_54931, len: 5563) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4992 of the sequence of contig_54937 took 0.00 secs 746 Numerified Fasta only Coordinate (seqid: contig_54937, len: 4992) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8434 of the sequence of contig_54994 took 0.00 secs 747 Numerified Fasta only Coordinate (seqid: contig_54994, len: 8434) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-17883 of the sequence of contig_55087 took 0.01 secs 748 Numerified Fasta only Coordinate (seqid: contig_55087, len: 17883) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3371 of the sequence of contig_55447 took 0.00 secs 749 Numerified Fasta only Coordinate (seqid: contig_55447, len: 3371) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11966 of the sequence of contig_55668 took 0.00 secs 750 Numerified Fasta only Coordinate (seqid: contig_55668, len: 11966) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2743 of the sequence of contig_55672 took 0.00 secs 751 Numerified Fasta only Coordinate (seqid: contig_55672, len: 2743) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3906 of the sequence of contig_55734 took 0.00 secs 752 Numerified Fasta only Coordinate (seqid: contig_55734, len: 3906) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11517 of the sequence of contig_55916 took 0.00 secs 753 Numerified Fasta only Coordinate (seqid: contig_55916, len: 11517) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4498 of the sequence of contig_56093 took 0.00 secs 754 Numerified Fasta only Coordinate (seqid: contig_56093, len: 4498) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2694 of the sequence of contig_56220 took 0.00 secs 755 Numerified Fasta only Coordinate (seqid: contig_56220, len: 2694) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13630 of the sequence of contig_56457 took 0.00 secs 756 Numerified Fasta only Coordinate (seqid: contig_56457, len: 13630) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6213 of the sequence of contig_56527 took 0.00 secs 757 Numerified Fasta only Coordinate (seqid: contig_56527, len: 6213) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11700 of the sequence of contig_56817 took 0.00 secs 758 Numerified Fasta only Coordinate (seqid: contig_56817, len: 11700) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3521 of the sequence of contig_56823 took 0.00 secs 759 Numerified Fasta only Coordinate (seqid: contig_56823, len: 3521) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-18013 of the sequence of contig_56960 took 0.01 secs 760 Numerified Fasta only Coordinate (seqid: contig_56960, len: 18013) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6505 of the sequence of contig_56974 took 0.00 secs 761 Numerified Fasta only Coordinate (seqid: contig_56974, len: 6505) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13326 of the sequence of contig_57056 took 0.00 secs 762 Numerified Fasta only Coordinate (seqid: contig_57056, len: 13326) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-15157 of the sequence of contig_57099 took 0.01 secs 763 Numerified Fasta only Coordinate (seqid: contig_57099, len: 15157) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-24574 of the sequence of contig_57166 took 0.01 secs 764 Numerified Fasta only Coordinate (seqid: contig_57166, len: 24574) in 0.02 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4524 of the sequence of contig_57167 took 0.00 secs 765 Numerified Fasta only Coordinate (seqid: contig_57167, len: 4524) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10596 of the sequence of contig_57209 took 0.00 secs 766 Numerified Fasta only Coordinate (seqid: contig_57209, len: 10596) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5532 of the sequence of contig_57274 took 0.00 secs 767 Numerified Fasta only Coordinate (seqid: contig_57274, len: 5532) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5931 of the sequence of contig_57296 took 0.00 secs 768 Numerified Fasta only Coordinate (seqid: contig_57296, len: 5931) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8678 of the sequence of contig_57322 took 0.00 secs 769 Numerified Fasta only Coordinate (seqid: contig_57322, len: 8678) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4190 of the sequence of contig_57364 took 0.00 secs 770 Numerified Fasta only Coordinate (seqid: contig_57364, len: 4190) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4878 of the sequence of contig_57462 took 0.00 secs 771 Numerified Fasta only Coordinate (seqid: contig_57462, len: 4878) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5544 of the sequence of contig_57677 took 0.00 secs 772 Numerified Fasta only Coordinate (seqid: contig_57677, len: 5544) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2490 of the sequence of contig_57692 took 0.00 secs 773 Numerified Fasta only Coordinate (seqid: contig_57692, len: 2490) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12319 of the sequence of contig_57788 took 0.00 secs 774 Numerified Fasta only Coordinate (seqid: contig_57788, len: 12319) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8805 of the sequence of contig_57951 took 0.00 secs 775 Numerified Fasta only Coordinate (seqid: contig_57951, len: 8805) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2574 of the sequence of contig_57970 took 0.00 secs 776 Numerified Fasta only Coordinate (seqid: contig_57970, len: 2574) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6915 of the sequence of contig_58053 took 0.00 secs 777 Numerified Fasta only Coordinate (seqid: contig_58053, len: 6915) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8986 of the sequence of contig_58072 took 0.00 secs 778 Numerified Fasta only Coordinate (seqid: contig_58072, len: 8986) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6676 of the sequence of contig_58156 took 0.00 secs 779 Numerified Fasta only Coordinate (seqid: contig_58156, len: 6676) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3798 of the sequence of contig_58184 took 0.00 secs 780 Numerified Fasta only Coordinate (seqid: contig_58184, len: 3798) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4104 of the sequence of contig_58333 took 0.00 secs 781 Numerified Fasta only Coordinate (seqid: contig_58333, len: 4104) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8154 of the sequence of contig_58387 took 0.00 secs 782 Numerified Fasta only Coordinate (seqid: contig_58387, len: 8154) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6440 of the sequence of contig_58422 took 0.00 secs 783 Numerified Fasta only Coordinate (seqid: contig_58422, len: 6440) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13253 of the sequence of contig_58467 took 0.01 secs 784 Numerified Fasta only Coordinate (seqid: contig_58467, len: 13253) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6060 of the sequence of contig_58610 took 0.00 secs 785 Numerified Fasta only Coordinate (seqid: contig_58610, len: 6060) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5520 of the sequence of contig_58655 took 0.00 secs 786 Numerified Fasta only Coordinate (seqid: contig_58655, len: 5520) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6349 of the sequence of contig_58965 took 0.00 secs 787 Numerified Fasta only Coordinate (seqid: contig_58965, len: 6349) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2805 of the sequence of contig_58995 took 0.00 secs 788 Numerified Fasta only Coordinate (seqid: contig_58995, len: 2805) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-10804 of the sequence of contig_59173 took 0.00 secs 789 Numerified Fasta only Coordinate (seqid: contig_59173, len: 10804) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9797 of the sequence of contig_59541 took 0.00 secs 790 Numerified Fasta only Coordinate (seqid: contig_59541, len: 9797) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12885 of the sequence of contig_59682 took 0.00 secs 791 Numerified Fasta only Coordinate (seqid: contig_59682, len: 12885) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2626 of the sequence of contig_59779 took 0.00 secs 792 Numerified Fasta only Coordinate (seqid: contig_59779, len: 2626) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3929 of the sequence of contig_59914 took 0.00 secs 793 Numerified Fasta only Coordinate (seqid: contig_59914, len: 3929) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2513 of the sequence of contig_60119 took 0.00 secs 794 Numerified Fasta only Coordinate (seqid: contig_60119, len: 2513) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2371 of the sequence of contig_60185 took 0.00 secs 795 Numerified Fasta only Coordinate (seqid: contig_60185, len: 2371) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5441 of the sequence of contig_60409 took 0.00 secs 796 Numerified Fasta only Coordinate (seqid: contig_60409, len: 5441) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13434 of the sequence of contig_60595 took 0.00 secs 797 Numerified Fasta only Coordinate (seqid: contig_60595, len: 13434) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4656 of the sequence of contig_60965 took 0.00 secs 798 Numerified Fasta only Coordinate (seqid: contig_60965, len: 4656) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11625 of the sequence of contig_61058 took 0.00 secs 799 Numerified Fasta only Coordinate (seqid: contig_61058, len: 11625) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3528 of the sequence of contig_61199 took 0.00 secs 800 Numerified Fasta only Coordinate (seqid: contig_61199, len: 3528) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6564 of the sequence of contig_61294 took 0.00 secs 801 Numerified Fasta only Coordinate (seqid: contig_61294, len: 6564) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5283 of the sequence of contig_61591 took 0.00 secs 802 Numerified Fasta only Coordinate (seqid: contig_61591, len: 5283) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2328 of the sequence of contig_61715 took 0.00 secs 803 Numerified Fasta only Coordinate (seqid: contig_61715, len: 2328) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9206 of the sequence of contig_61857 took 0.00 secs 804 Numerified Fasta only Coordinate (seqid: contig_61857, len: 9206) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2385 of the sequence of contig_61973 took 0.00 secs 805 Numerified Fasta only Coordinate (seqid: contig_61973, len: 2385) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4852 of the sequence of contig_62227 took 0.00 secs 806 Numerified Fasta only Coordinate (seqid: contig_62227, len: 4852) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2863 of the sequence of contig_62253 took 0.00 secs 807 Numerified Fasta only Coordinate (seqid: contig_62253, len: 2863) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2738 of the sequence of contig_62374 took 0.00 secs 808 Numerified Fasta only Coordinate (seqid: contig_62374, len: 2738) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2672 of the sequence of contig_62419 took 0.00 secs 809 Numerified Fasta only Coordinate (seqid: contig_62419, len: 2672) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4558 of the sequence of contig_62555 took 0.00 secs 810 Numerified Fasta only Coordinate (seqid: contig_62555, len: 4558) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3322 of the sequence of contig_62732 took 0.00 secs 811 Numerified Fasta only Coordinate (seqid: contig_62732, len: 3322) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3924 of the sequence of contig_62741 took 0.00 secs 812 Numerified Fasta only Coordinate (seqid: contig_62741, len: 3924) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4291 of the sequence of contig_62839 took 0.00 secs 813 Numerified Fasta only Coordinate (seqid: contig_62839, len: 4291) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6387 of the sequence of contig_62945 took 0.00 secs 814 Numerified Fasta only Coordinate (seqid: contig_62945, len: 6387) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4900 of the sequence of contig_63063 took 0.00 secs 815 Numerified Fasta only Coordinate (seqid: contig_63063, len: 4900) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2915 of the sequence of contig_63119 took 0.00 secs 816 Numerified Fasta only Coordinate (seqid: contig_63119, len: 2915) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5525 of the sequence of contig_63131 took 0.00 secs 817 Numerified Fasta only Coordinate (seqid: contig_63131, len: 5525) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5531 of the sequence of contig_63188 took 0.00 secs 818 Numerified Fasta only Coordinate (seqid: contig_63188, len: 5531) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5782 of the sequence of contig_63298 took 0.00 secs 819 Numerified Fasta only Coordinate (seqid: contig_63298, len: 5782) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8236 of the sequence of contig_63436 took 0.00 secs 820 Numerified Fasta only Coordinate (seqid: contig_63436, len: 8236) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3896 of the sequence of contig_63665 took 0.00 secs 821 Numerified Fasta only Coordinate (seqid: contig_63665, len: 3896) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5629 of the sequence of contig_63762 took 0.00 secs 822 Numerified Fasta only Coordinate (seqid: contig_63762, len: 5629) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-7421 of the sequence of contig_63903 took 0.00 secs 823 Numerified Fasta only Coordinate (seqid: contig_63903, len: 7421) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4813 of the sequence of contig_63992 took 0.00 secs 824 Numerified Fasta only Coordinate (seqid: contig_63992, len: 4813) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-16386 of the sequence of contig_64026 took 0.01 secs 825 Numerified Fasta only Coordinate (seqid: contig_64026, len: 16386) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3857 of the sequence of contig_64048 took 0.00 secs 826 Numerified Fasta only Coordinate (seqid: contig_64048, len: 3857) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4528 of the sequence of contig_64086 took 0.00 secs 827 Numerified Fasta only Coordinate (seqid: contig_64086, len: 4528) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3117 of the sequence of contig_64353 took 0.00 secs 828 Numerified Fasta only Coordinate (seqid: contig_64353, len: 3117) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11638 of the sequence of contig_64442 took 0.00 secs 829 Numerified Fasta only Coordinate (seqid: contig_64442, len: 11638) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2545 of the sequence of contig_64634 took 0.00 secs 830 Numerified Fasta only Coordinate (seqid: contig_64634, len: 2545) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6828 of the sequence of contig_64774 took 0.00 secs 831 Numerified Fasta only Coordinate (seqid: contig_64774, len: 6828) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3469 of the sequence of contig_64911 took 0.00 secs 832 Numerified Fasta only Coordinate (seqid: contig_64911, len: 3469) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3323 of the sequence of contig_65520 took 0.00 secs 833 Numerified Fasta only Coordinate (seqid: contig_65520, len: 3323) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-8741 of the sequence of contig_65578 took 0.00 secs 834 Numerified Fasta only Coordinate (seqid: contig_65578, len: 8741) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2623 of the sequence of contig_65629 took 0.00 secs 835 Numerified Fasta only Coordinate (seqid: contig_65629, len: 2623) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3333 of the sequence of contig_65974 took 0.00 secs 836 Numerified Fasta only Coordinate (seqid: contig_65974, len: 3333) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-13372 of the sequence of contig_66049 took 0.01 secs 837 Numerified Fasta only Coordinate (seqid: contig_66049, len: 13372) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4434 of the sequence of contig_66091 took 0.00 secs 838 Numerified Fasta only Coordinate (seqid: contig_66091, len: 4434) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3610 of the sequence of contig_66111 took 0.00 secs 839 Numerified Fasta only Coordinate (seqid: contig_66111, len: 3610) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2394 of the sequence of contig_66195 took 0.00 secs 840 Numerified Fasta only Coordinate (seqid: contig_66195, len: 2394) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9375 of the sequence of contig_66519 took 0.00 secs 841 Numerified Fasta only Coordinate (seqid: contig_66519, len: 9375) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3024 of the sequence of contig_66746 took 0.00 secs 842 Numerified Fasta only Coordinate (seqid: contig_66746, len: 3024) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2225 of the sequence of contig_67097 took 0.00 secs 843 Numerified Fasta only Coordinate (seqid: contig_67097, len: 2225) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4695 of the sequence of contig_67298 took 0.00 secs 844 Numerified Fasta only Coordinate (seqid: contig_67298, len: 4695) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3993 of the sequence of contig_67552 took 0.00 secs 845 Numerified Fasta only Coordinate (seqid: contig_67552, len: 3993) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5711 of the sequence of contig_67629 took 0.00 secs 846 Numerified Fasta only Coordinate (seqid: contig_67629, len: 5711) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2130 of the sequence of contig_67694 took 0.00 secs 847 Numerified Fasta only Coordinate (seqid: contig_67694, len: 2130) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4931 of the sequence of contig_67794 took 0.00 secs 848 Numerified Fasta only Coordinate (seqid: contig_67794, len: 4931) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5199 of the sequence of contig_68032 took 0.00 secs 849 Numerified Fasta only Coordinate (seqid: contig_68032, len: 5199) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4729 of the sequence of contig_68047 took 0.00 secs 850 Numerified Fasta only Coordinate (seqid: contig_68047, len: 4729) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2582 of the sequence of contig_68924 took 0.00 secs 851 Numerified Fasta only Coordinate (seqid: contig_68924, len: 2582) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-12650 of the sequence of contig_68994 took 0.00 secs 852 Numerified Fasta only Coordinate (seqid: contig_68994, len: 12650) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4287 of the sequence of contig_69335 took 0.00 secs 853 Numerified Fasta only Coordinate (seqid: contig_69335, len: 4287) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9990 of the sequence of contig_69408 took 0.00 secs 854 Numerified Fasta only Coordinate (seqid: contig_69408, len: 9990) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3298 of the sequence of contig_70255 took 0.00 secs 855 Numerified Fasta only Coordinate (seqid: contig_70255, len: 3298) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3422 of the sequence of contig_70282 took 0.00 secs 856 Numerified Fasta only Coordinate (seqid: contig_70282, len: 3422) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3095 of the sequence of contig_70408 took 0.00 secs 857 Numerified Fasta only Coordinate (seqid: contig_70408, len: 3095) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3336 of the sequence of contig_70573 took 0.00 secs 858 Numerified Fasta only Coordinate (seqid: contig_70573, len: 3336) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3085 of the sequence of contig_71411 took 0.00 secs 859 Numerified Fasta only Coordinate (seqid: contig_71411, len: 3085) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2577 of the sequence of contig_71607 took 0.00 secs 860 Numerified Fasta only Coordinate (seqid: contig_71607, len: 2577) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3481 of the sequence of contig_71779 took 0.00 secs 861 Numerified Fasta only Coordinate (seqid: contig_71779, len: 3481) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2086 of the sequence of contig_71790 took 0.00 secs 862 Numerified Fasta only Coordinate (seqid: contig_71790, len: 2086) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-11191 of the sequence of contig_71832 took 0.00 secs 863 Numerified Fasta only Coordinate (seqid: contig_71832, len: 11191) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5760 of the sequence of contig_71973 took 0.00 secs 864 Numerified Fasta only Coordinate (seqid: contig_71973, len: 5760) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4180 of the sequence of contig_72488 took 0.00 secs 865 Numerified Fasta only Coordinate (seqid: contig_72488, len: 4180) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2171 of the sequence of contig_72496 took 0.00 secs 866 Numerified Fasta only Coordinate (seqid: contig_72496, len: 2171) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2521 of the sequence of contig_72747 took 0.00 secs 867 Numerified Fasta only Coordinate (seqid: contig_72747, len: 2521) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3338 of the sequence of contig_72763 took 0.00 secs 868 Numerified Fasta only Coordinate (seqid: contig_72763, len: 3338) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2483 of the sequence of contig_72781 took 0.00 secs 869 Numerified Fasta only Coordinate (seqid: contig_72781, len: 2483) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5907 of the sequence of contig_72871 took 0.00 secs 870 Numerified Fasta only Coordinate (seqid: contig_72871, len: 5907) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-9116 of the sequence of contig_73281 took 0.00 secs 871 Numerified Fasta only Coordinate (seqid: contig_73281, len: 9116) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4098 of the sequence of contig_73464 took 0.00 secs 872 Numerified Fasta only Coordinate (seqid: contig_73464, len: 4098) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2295 of the sequence of contig_73975 took 0.00 secs 873 Numerified Fasta only Coordinate (seqid: contig_73975, len: 2295) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4988 of the sequence of contig_74158 took 0.00 secs 874 Numerified Fasta only Coordinate (seqid: contig_74158, len: 4988) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5418 of the sequence of contig_74547 took 0.00 secs 875 Numerified Fasta only Coordinate (seqid: contig_74547, len: 5418) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2136 of the sequence of contig_74588 took 0.00 secs 876 Numerified Fasta only Coordinate (seqid: contig_74588, len: 2136) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5377 of the sequence of contig_74911 took 0.00 secs 877 Numerified Fasta only Coordinate (seqid: contig_74911, len: 5377) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4687 of the sequence of contig_75257 took 0.00 secs 878 Numerified Fasta only Coordinate (seqid: contig_75257, len: 4687) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5188 of the sequence of contig_75508 took 0.00 secs 879 Numerified Fasta only Coordinate (seqid: contig_75508, len: 5188) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3221 of the sequence of contig_75805 took 0.00 secs 880 Numerified Fasta only Coordinate (seqid: contig_75805, len: 3221) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3269 of the sequence of contig_76064 took 0.00 secs 881 Numerified Fasta only Coordinate (seqid: contig_76064, len: 3269) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2841 of the sequence of contig_76208 took 0.00 secs 882 Numerified Fasta only Coordinate (seqid: contig_76208, len: 2841) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3192 of the sequence of contig_77591 took 0.00 secs 883 Numerified Fasta only Coordinate (seqid: contig_77591, len: 3192) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3993 of the sequence of contig_77956 took 0.00 secs 884 Numerified Fasta only Coordinate (seqid: contig_77956, len: 3993) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2521 of the sequence of contig_78462 took 0.00 secs 885 Numerified Fasta only Coordinate (seqid: contig_78462, len: 2521) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5686 of the sequence of contig_78503 took 0.00 secs 886 Numerified Fasta only Coordinate (seqid: contig_78503, len: 5686) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2696 of the sequence of contig_78603 took 0.00 secs 887 Numerified Fasta only Coordinate (seqid: contig_78603, len: 2696) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3262 of the sequence of contig_78693 took 0.00 secs 888 Numerified Fasta only Coordinate (seqid: contig_78693, len: 3262) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-6672 of the sequence of contig_79030 took 0.00 secs 889 Numerified Fasta only Coordinate (seqid: contig_79030, len: 6672) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2610 of the sequence of contig_79246 took 0.00 secs 890 Numerified Fasta only Coordinate (seqid: contig_79246, len: 2610) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3733 of the sequence of contig_79798 took 0.00 secs 891 Numerified Fasta only Coordinate (seqid: contig_79798, len: 3733) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5744 of the sequence of contig_80262 took 0.00 secs 892 Numerified Fasta only Coordinate (seqid: contig_80262, len: 5744) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-4026 of the sequence of contig_80635 took 0.00 secs 893 Numerified Fasta only Coordinate (seqid: contig_80635, len: 4026) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3563 of the sequence of contig_80880 took 0.00 secs 894 Numerified Fasta only Coordinate (seqid: contig_80880, len: 3563) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3406 of the sequence of contig_80889 took 0.00 secs 895 Numerified Fasta only Coordinate (seqid: contig_80889, len: 3406) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2851 of the sequence of contig_81029 took 0.00 secs 896 Numerified Fasta only Coordinate (seqid: contig_81029, len: 2851) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2737 of the sequence of contig_81333 took 0.00 secs 897 Numerified Fasta only Coordinate (seqid: contig_81333, len: 2737) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3114 of the sequence of contig_82065 took 0.00 secs 898 Numerified Fasta only Coordinate (seqid: contig_82065, len: 3114) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3156 of the sequence of contig_82649 took 0.00 secs 899 Numerified Fasta only Coordinate (seqid: contig_82649, len: 3156) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3022 of the sequence of contig_83016 took 0.00 secs 900 Numerified Fasta only Coordinate (seqid: contig_83016, len: 3022) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2555 of the sequence of contig_83087 took 0.00 secs 901 Numerified Fasta only Coordinate (seqid: contig_83087, len: 2555) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 2025-02-11 14:44:10.669126: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1929] Created device /job:localhost/replica:0/task:0/device:GPU:0 with 8252 MB memory: -> device: 0, name: NVIDIA GeForce RTX 3080, pci bus id: 0000:b3:00.0, compute capability: 8.6 Numerification of 0-1973 of the sequence of contig_84578 took 0.00 secs 902 Numerified Fasta only Coordinate (seqid: contig_84578, len: 1973) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2467 of the sequence of contig_84790 took 0.00 secs 903 Numerified Fasta only Coordinate (seqid: contig_84790, len: 2467) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-2678 of the sequence of contig_86586 took 0.00 secs 904 Numerified Fasta only Coordinate (seqid: contig_86586, len: 2678) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-5306 of the sequence of contig_87001 took 0.00 secs 905 Numerified Fasta only Coordinate (seqid: contig_87001, len: 5306) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3178 of the sequence of contig_87212 took 0.00 secs 906 Numerified Fasta only Coordinate (seqid: contig_87212, len: 3178) in 0.01 secs 1 expected num of chunks to write in 19994040 bases to hdf5 Numerification of 0-3593 of the sequence of contig_87517 took 0.00 secs 907 Numerified Fasta only Coordinate (seqid: contig_87517, len: 3593) in 0.01 secs logged installed version in place of git commit for geenuff logged installed version in place of git commit for helixer FASTA to H5 conversion done. Starting neural network prediction with overlapping. HelixerModel config: {'batch_size': 8, 'calculate_uncertainty': False, 'check_every_nth_batch': 1000000, 'class_weights': 'None', 'clip_norm': 3.0, 'cnn_layers': 1, 'compression': 'gzip', 'core_length': 16038, 'coverage_norm': None, 'coverage_offset': 0.0, 'coverage_weights': False, 'cpus': 8, 'data_dir': None, 'debug': False, 'dropout1': 0.0, 'dropout2': 0.0, 'epochs': 10000, 'eval': False, 'filter_depth': 32, 'fine_tune': False, 'float_precision': 'float32', 'gpu_id': -1, 'input_coverage': False, 'kernel_size': 26, 'large_eval_folder': '', 'learning_rate': 0.0003, 'load_model_path': '/home/helixer_user/model/invertebrate_v0.3_m_0200.h5', 'load_predictions': False, 'loss': '', 'lstm_layers': 1, 'nni': False, 'no_utrs': False, 'optimizer': 'adamw', 'overlap': True, 'overlap_offset': 10692, 'patience': 3, 'pool_size': 9, 'post_coverage_hidden_layer': False, 'predict_phase': False, 'prediction_output_path': '/tmp/tmpq3ctp7hh/tmp_predictions_.h5', 'pretrained_model_path': None, 'resume_training': False, 'save_every_check': False, 'save_model_path': './best_model.h5', 'stretch_transition_weights': 0, 'test_data': '/tmp/tmpq3ctp7hh/tmp_species_.h5', 'transition_weights': 'None', 'units': 32, 'val_test_batch_size': 32, 'verbose': True, 'weight_decay': 3.5e-05, 'workers': 1} No err_samples dataset found, correct samples will be set to 0 No fully_intergenic_samples dataset found, fully intergenic samples will be set to 0 Data config: [{'geenuff_commit': 'commit not found, version: 0.3.2', 'helixer_commit': 'commit not found, version: 0.3.4', 'input_path': 'input_1/parasite.fa.ref.fa', 'timestamp': '2025-02-11 14:44:08.105402'}] Test data shape: (2346, 21384) Intergenic test seqs: 0.00% Fully correct test seqs: 0.00% Number of devices: 1 Current Helixer version: 0.3.4 Md5sum of the loaded model: 8e9563558f8636b7b5d0750bbad95279 /home/helixer_user/model/invertebrate_v0.3_m_0200.h5 Model: "model" __________________________________________________________________________________________________ Layer (type) Output Shape Param # Connected to ================================================================================================== main_input (InputLayer) [(None, None, 4)] 0 [] conv1d (Conv1D) (None, None, 128) 5248 ['main_input[0][0]'] batch_normalization (Batch (None, None, 128) 512 ['conv1d[0][0]'] Normalization) conv1d_1 (Conv1D) (None, None, 128) 163968 ['batch_normalization[0][0]'] batch_normalization_1 (Bat (None, None, 128) 512 ['conv1d_1[0][0]'] chNormalization) conv1d_2 (Conv1D) (None, None, 128) 163968 ['batch_normalization_1[0][0]' ] batch_normalization_2 (Bat (None, None, 128) 512 ['conv1d_2[0][0]'] chNormalization) conv1d_3 (Conv1D) (None, None, 128) 163968 ['batch_normalization_2[0][0]' ] reshape (Reshape) (None, None, 1152) 0 ['conv1d_3[0][0]'] bidirectional (Bidirection (None, None, 256) 1311744 ['reshape[0][0]'] al) bidirectional_1 (Bidirecti (None, None, 256) 394240 ['bidirectional[0][0]'] onal) bidirectional_2 (Bidirecti (None, None, 256) 394240 ['bidirectional_1[0][0]'] onal) bidirectional_3 (Bidirecti (None, None, 256) 394240 ['bidirectional_2[0][0]'] onal) dense (Dense) (None, None, 72) 18504 ['bidirectional_3[0][0]'] tf.split (TFOpLambda) [(None, None, 36), 0 ['dense[0][0]'] (None, None, 36)] reshape_1 (Reshape) (None, None, 9, 4) 0 ['tf.split[0][0]'] reshape_2 (Reshape) (None, None, 9, 4) 0 ['tf.split[0][1]'] genic (Activation) (None, None, 9, 4) 0 ['reshape_1[0][0]'] phase (Activation) (None, None, 9, 4) 0 ['reshape_2[0][0]'] ================================================================================================== Total params: 3011656 (11.49 MB) Trainable params: 3010888 (11.49 MB) Non-trainable params: 768 (3.00 KB) __________________________________________________________________________________________________ 2025-02-11 14:44:19.649333: I external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:454] Loaded cuDNN version 8906 HMM Config Splicing Flags: U:true US:true S:true SC:true C:true CS:true S:true SU:true U:true Splicing - Weights: Donor 1, Acceptor 1 Splicing - Fixed Penalties: U2-GT-AG 0, U2-GT-AC 0 U12-GT-AG 0 U12-AT-AC 0 Coding - Weights: Start 1000, Stop 1000 Phase Mode: Implementation 1, Dilute to Total, Retention: 0.2 Sequences for Species - 0 BP_Extractor for Sequence contig_26 - ID 0 Forward for Sequence contig_26 - ID 0 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7109 1 0 0 Non Coding 10582 67 67 72 UTR 22 93 12 0 Phase 0 36 542 7 5 Coding 152 13 1839 1 Phase 1 38 4 540 5 Intron 7 0 6 3298 Phase 2 40 6 5 537 Precision Recall F1 Precision Recall F1 Intergenic 0.97517 0.99986 0.98736 Non Coding 0.98934 0.98090 0.98511 UTR 0.86916 0.73228 0.79487 Phase 0 0.87561 0.91864 0.89661 Coding 0.99031 0.91721 0.95236 Phase 1 0.87237 0.91993 0.89552 Intron 0.99970 0.99607 0.99788 Phase 2 0.86753 0.91327 0.88981 Subgenic 0.99631 0.96633 0.98109 Coding 0.87184 0.91728 0.89398 Genic 0.99373 0.96087 0.97702 Reverse for Sequence contig_26 - ID 0 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11844 0 0 0 Non Coding 11943 0 0 0 UTR 64 0 0 0 Phase 0 209 0 0 0 Coding 642 0 0 0 Phase 1 195 0 0 0 Intron 3 0 0 0 Phase 2 206 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94352 1.00000 0.97094 Non Coding 0.95141 1.00000 0.97510 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_58 - ID 1 Forward for Sequence contig_58 - ID 1 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 36026 5 54 215 Non Coding 43090 219 195 214 UTR 92 480 17 34 Phase 0 337 1090 0 0 Coding 1401 2 3794 120 Phase 1 369 0 1114 0 Intron 1213 1 62 4534 Phase 2 327 0 0 1095 Precision Recall F1 Precision Recall F1 Intergenic 0.93014 0.99245 0.96028 Non Coding 0.97659 0.98564 0.98109 UTR 0.98361 0.77047 0.86409 Phase 0 0.83270 0.76384 0.79678 Coding 0.96613 0.71356 0.82086 Phase 1 0.85103 0.75118 0.79799 Intron 0.92474 0.78038 0.84645 Phase 2 0.83652 0.77004 0.80190 Subgenic 0.94315 0.74845 0.83459 Coding 0.84008 0.76154 0.79889 Genic 0.94527 0.74962 0.83615 Reverse for Sequence contig_58 - ID 1 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 41087 4 221 1 Non Coding 43645 94 86 78 UTR 221 231 2 6 Phase 0 620 757 0 0 Coding 2407 0 2308 17 Phase 1 636 0 765 0 Intron 343 16 22 1164 Phase 2 596 0 0 773 Precision Recall F1 Precision Recall F1 Intergenic 0.93257 0.99453 0.96255 Non Coding 0.95929 0.99412 0.97640 UTR 0.92032 0.50217 0.64979 Phase 0 0.88954 0.54975 0.67953 Coding 0.90403 0.48774 0.63363 Phase 1 0.89894 0.54604 0.67940 Intron 0.97980 0.75340 0.85181 Phase 2 0.90834 0.56465 0.69640 Subgenic 0.92809 0.55313 0.69315 Coding 0.89894 0.55341 0.68507 Genic 0.92761 0.54965 0.69028 BP_Extractor for Sequence contig_74 - ID 2 Forward for Sequence contig_74 - ID 2 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4215 0 0 0 Non Coding 4215 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_74 - ID 2 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4215 0 0 0 Non Coding 4215 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_148 - ID 3 Forward for Sequence contig_148 - ID 3 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 71217 44 3 172 Non Coding 79158 101 122 123 UTR 513 1043 18 68 Phase 0 800 2654 2 2 Coding 3358 17 8201 110 Phase 1 771 2 2632 1 Intron 1016 71 52 3891 Phase 2 791 1 2 2632 Precision Recall F1 Precision Recall F1 Intergenic 0.93579 0.99693 0.96539 Non Coding 0.97103 0.99565 0.98318 UTR 0.88766 0.63520 0.74050 Phase 0 0.96229 0.76750 0.85393 Coding 0.99118 0.70178 0.82174 Phase 1 0.95431 0.77275 0.85399 Intron 0.91747 0.77356 0.83939 Phase 2 0.95431 0.76824 0.85123 Subgenic 0.96620 0.72338 0.82734 Coding 0.95697 0.76948 0.85305 Genic 0.95946 0.71549 0.81971 Reverse for Sequence contig_148 - ID 3 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 69791 39 87 111 Non Coding 76637 349 381 381 UTR 206 1692 52 36 Phase 0 545 3499 0 6 Coding 1729 47 11333 235 Phase 1 514 6 3467 0 Intron 186 11 90 4149 Phase 2 536 0 6 3467 Precision Recall F1 Precision Recall F1 Intergenic 0.97051 0.99662 0.98339 Non Coding 0.97961 0.98571 0.98265 UTR 0.94578 0.85196 0.89642 Phase 0 0.90789 0.86395 0.88537 Coding 0.98019 0.84930 0.91006 Phase 1 0.89958 0.86958 0.88433 Intron 0.91569 0.93530 0.92539 Phase 2 0.89958 0.86480 0.88185 Subgenic 0.96203 0.87075 0.91412 Coding 0.90235 0.86610 0.88385 Genic 0.96041 0.86887 0.91235 BP_Extractor for Sequence contig_215 - ID 4 Forward for Sequence contig_215 - ID 4 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2955 0 0 0 Non Coding 2957 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 2 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99932 1.00000 0.99966 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN 0.00000 0.00000 Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 Reverse for Sequence contig_215 - ID 4 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2957 0 0 0 Non Coding 2957 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_222 - ID 5 Forward for Sequence contig_222 - ID 5 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20057 5 5 115 Non Coding 26842 169 172 170 UTR 32 592 12 13 Phase 0 27 1266 0 0 Coding 105 1 4211 102 Phase 1 33 0 1261 0 Intron 12 0 77 5896 Phase 2 28 0 2 1265 Precision Recall F1 Precision Recall F1 Intergenic 0.99263 0.99381 0.99322 Non Coding 0.99673 0.98132 0.98897 UTR 0.98997 0.91217 0.94948 Phase 0 0.88223 0.97912 0.92815 Coding 0.97816 0.95293 0.96538 Phase 1 0.87875 0.97450 0.92415 Intron 0.96246 0.98513 0.97366 Phase 2 0.88153 0.97683 0.92674 Subgenic 0.96894 0.97145 0.97019 Coding 0.88084 0.97682 0.92635 Genic 0.97008 0.96797 0.96902 Reverse for Sequence contig_222 - ID 5 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31235 0 0 0 Non Coding 31235 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_253 - ID 6 Forward for Sequence contig_253 - ID 6 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25573 14 0 0 Non Coding 28886 32 33 38 UTR 198 928 17 5 Phase 0 279 696 0 0 Coding 1037 15 2146 35 Phase 1 269 0 695 0 Intron 22 24 21 1826 Phase 2 243 0 0 690 Precision Recall F1 Precision Recall F1 Intergenic 0.95315 0.99945 0.97575 Non Coding 0.97335 0.99645 0.98476 UTR 0.94597 0.80836 0.87177 Phase 0 0.95604 0.71385 0.81738 Coding 0.98260 0.66378 0.79232 Phase 1 0.95467 0.72095 0.82151 Intron 0.97856 0.96461 0.97153 Phase 2 0.94780 0.73955 0.83082 Subgenic 0.98074 0.77487 0.86574 Coding 0.95284 0.72458 0.82318 Genic 0.97396 0.78100 0.86687 Reverse for Sequence contig_253 - ID 6 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22654 3 1 1 Non Coding 25541 122 132 97 UTR 186 561 9 15 Phase 0 426 1522 16 1 Coding 1732 9 4961 37 Phase 1 458 1 1510 17 Intron 747 6 9 930 Phase 2 456 15 2 1545 Precision Recall F1 Precision Recall F1 Intergenic 0.89474 0.99978 0.94435 Non Coding 0.95015 0.98644 0.96796 UTR 0.96891 0.72763 0.83111 Phase 0 0.91687 0.77455 0.83972 Coding 0.99618 0.73616 0.84666 Phase 1 0.90964 0.76032 0.82830 Intron 0.94608 0.54965 0.69533 Phase 2 0.93072 0.76561 0.84013 Subgenic 0.98793 0.69873 0.81854 Coding 0.91908 0.76680 0.83606 Genic 0.98624 0.70115 0.81961 BP_Extractor for Sequence contig_303 - ID 7 Forward for Sequence contig_303 - ID 7 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 64513 110 9 153 Non Coding 73177 214 214 240 UTR 266 730 24 42 Phase 0 93 2051 8 11 Coding 269 20 6761 139 Phase 1 111 12 2052 9 Intron 68 11 64 7167 Phase 2 107 9 12 2026 Precision Recall F1 Precision Recall F1 Intergenic 0.99074 0.99580 0.99326 Non Coding 0.99577 0.99095 0.99336 UTR 0.83812 0.68738 0.75530 Phase 0 0.89720 0.94822 0.92200 Coding 0.98586 0.94046 0.96263 Phase 1 0.89764 0.93956 0.91812 Intron 0.95547 0.98044 0.96779 Phase 2 0.88626 0.94058 0.91261 Subgenic 0.96998 0.96062 0.96528 Coding 0.89370 0.94278 0.91758 Genic 0.96244 0.94197 0.95210 Reverse for Sequence contig_303 - ID 7 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 68896 5 0 29 Non Coding 74696 106 112 108 UTR 135 491 12 6 Phase 0 132 1653 1 0 Coding 1366 3 5173 129 Phase 1 133 0 1646 1 Intron 80 12 95 3914 Phase 2 105 1 1 1651 Precision Recall F1 Precision Recall F1 Intergenic 0.97757 0.99951 0.98842 Non Coding 0.99507 0.99565 0.99536 UTR 0.96086 0.76242 0.85022 Phase 0 0.93920 0.92553 0.93232 Coding 0.97973 0.77545 0.86570 Phase 1 0.93523 0.92472 0.92994 Intron 0.95978 0.95440 0.95709 Phase 2 0.93807 0.93914 0.93860 Subgenic 0.97104 0.84358 0.90283 Coding 0.93750 0.92975 0.93361 Genic 0.97051 0.83900 0.89998 BP_Extractor for Sequence contig_421 - ID 8 Forward for Sequence contig_421 - ID 8 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 32337 74 253 216 Non Coding 39087 178 186 184 UTR 44 1479 27 12 Phase 0 10 1707 0 0 Coding 142 12 5365 7 Phase 1 20 0 1699 0 Intron 50 8 10 4746 Phase 2 10 0 0 1701 Precision Recall F1 Precision Recall F1 Intergenic 0.99275 0.98349 0.98810 Non Coding 0.99898 0.98617 0.99253 UTR 0.94024 0.94686 0.94354 Phase 0 0.90557 0.99418 0.94781 Coding 0.94872 0.97087 0.95966 Phase 1 0.90133 0.98837 0.94284 Intron 0.95282 0.98587 0.96907 Phase 2 0.90239 0.99416 0.94605 Subgenic 0.95064 0.97785 0.96405 Coding 0.90309 0.99223 0.94557 Genic 0.94930 0.97379 0.96139 Reverse for Sequence contig_421 - ID 8 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33227 0 0 0 Non Coding 40695 15 21 20 UTR 55 550 17 17 Phase 0 31 1315 0 0 Coding 27 1 3958 80 Phase 1 34 0 1309 0 Intron 11 0 15 6824 Phase 2 32 0 0 1310 Precision Recall F1 Precision Recall F1 Intergenic 0.99721 1.00000 0.99860 Non Coding 0.99762 0.99863 0.99812 UTR 0.99819 0.86072 0.92437 Phase 0 0.98872 0.97697 0.98281 Coding 0.99198 0.97344 0.98262 Phase 1 0.98421 0.97468 0.97942 Intron 0.98598 0.99620 0.99107 Phase 2 0.98496 0.97615 0.98054 Subgenic 0.98818 0.98772 0.98795 Coding 0.98596 0.97594 0.98093 Genic 0.98866 0.98070 0.98466 BP_Extractor for Sequence contig_513 - ID 9 Forward for Sequence contig_513 - ID 9 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13595 17 167 71 Non Coding 19034 121 120 112 UTR 2 782 11 17 Phase 0 12 1067 0 1 Coding 1 2 3356 52 Phase 1 16 0 1067 0 Intron 0 0 30 4538 Phase 2 15 0 1 1075 Precision Recall F1 Precision Recall F1 Intergenic 0.99978 0.98159 0.99060 Non Coding 0.99775 0.98179 0.98970 UTR 0.97628 0.96305 0.96962 Phase 0 0.89815 0.98796 0.94092 Coding 0.94164 0.98388 0.96229 Phase 1 0.89815 0.98523 0.93967 Intron 0.97007 0.99343 0.98161 Phase 2 0.90488 0.98533 0.94340 Subgenic 0.95778 0.98935 0.97331 Coding 0.90039 0.98617 0.94133 Genic 0.95942 0.98692 0.97297 Reverse for Sequence contig_513 - ID 9 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18321 4 7 0 Non Coding 20796 55 70 77 UTR 52 359 15 0 Phase 0 35 524 0 0 Coding 175 1 1696 31 Phase 1 36 0 508 0 Intron 0 5 17 1958 Phase 2 39 0 0 501 Precision Recall F1 Precision Recall F1 Intergenic 0.98776 0.99940 0.99355 Non Coding 0.99474 0.99038 0.99255 UTR 0.97290 0.84272 0.90314 Phase 0 0.90501 0.93739 0.92091 Coding 0.97752 0.89122 0.93238 Phase 1 0.87889 0.93382 0.90553 Intron 0.98441 0.98889 0.98665 Phase 2 0.86678 0.92778 0.89624 Subgenic 0.98120 0.94102 0.96069 Coding 0.88357 0.93305 0.90764 Genic 0.98045 0.93131 0.95525 BP_Extractor for Sequence contig_561 - ID 10 Forward for Sequence contig_561 - ID 10 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5013 0 0 0 Non Coding 5013 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_561 - ID 10 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3687 0 0 0 Non Coding 3801 0 0 0 UTR 43 0 0 0 Phase 0 405 0 0 0 Coding 1273 0 0 0 Phase 1 404 0 0 0 Intron 10 0 0 0 Phase 2 403 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.73549 1.00000 0.84759 Non Coding 0.75823 1.00000 0.86249 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_769 - ID 11 Forward for Sequence contig_769 - ID 11 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 85564 9 41 512 Non Coding 95668 140 129 173 UTR 365 624 17 3 Phase 0 638 1221 0 0 Coding 2893 14 3959 52 Phase 1 634 0 1232 0 Intron 732 24 66 6779 Phase 2 631 0 0 1188 Precision Recall F1 Precision Recall F1 Intergenic 0.95545 0.99347 0.97409 Non Coding 0.98050 0.99540 0.98789 UTR 0.92996 0.61843 0.74286 Phase 0 0.89713 0.65680 0.75839 Coding 0.96963 0.57228 0.71975 Phase 1 0.90522 0.66024 0.76356 Intron 0.92282 0.89186 0.90707 Phase 2 0.87289 0.65311 0.74717 Subgenic 0.93954 0.73958 0.82766 Coding 0.89175 0.65675 0.75641 Genic 0.93901 0.73171 0.82250 Reverse for Sequence contig_769 - ID 11 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 82331 17 107 62 Non Coding 93166 261 254 263 UTR 160 495 40 48 Phase 0 134 2435 0 0 Coding 405 2 7846 134 Phase 1 142 0 2441 0 Intron 290 41 93 9583 Phase 2 126 0 0 2432 Precision Recall F1 Precision Recall F1 Intergenic 0.98972 0.99775 0.99372 Non Coding 0.99570 0.99172 0.99371 UTR 0.89189 0.66622 0.76271 Phase 0 0.90319 0.94784 0.92498 Coding 0.97032 0.93550 0.95259 Phase 1 0.90575 0.94503 0.92497 Intron 0.97517 0.95763 0.96632 Phase 2 0.90241 0.95074 0.92595 Subgenic 0.97298 0.94754 0.96009 Coding 0.90378 0.94786 0.92530 Genic 0.97054 0.93661 0.95328 BP_Extractor for Sequence contig_810 - ID 12 Forward for Sequence contig_810 - ID 12 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 831 6 76 14 Non Coding 3397 103 119 115 UTR 16 82 32 70 Phase 0 9 888 0 3 Coding 17 4 2868 26 Phase 1 14 3 872 0 Intron 8 0 6 2356 Phase 2 10 0 3 876 Precision Recall F1 Precision Recall F1 Intergenic 0.95298 0.89644 0.92385 Non Coding 0.99038 0.90975 0.94835 UTR 0.89130 0.41000 0.56164 Phase 0 0.89336 0.98667 0.93770 Coding 0.96177 0.98388 0.97270 Phase 1 0.87726 0.98088 0.92618 Intron 0.95539 0.99409 0.97436 Phase 2 0.88129 0.98538 0.93043 Subgenic 0.95888 0.98846 0.97345 Coding 0.88397 0.98432 0.93145 Genic 0.95776 0.96737 0.96254 Reverse for Sequence contig_810 - ID 12 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6412 0 0 0 Non Coding 6412 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_875 - ID 13 Forward for Sequence contig_875 - ID 13 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21615 0 0 0 Non Coding 21870 0 0 0 UTR 71 0 0 0 Phase 0 275 0 0 0 Coding 978 0 0 0 Phase 1 273 0 0 0 Intron 27 0 0 0 Phase 2 273 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95258 1.00000 0.97571 Non Coding 0.96382 1.00000 0.98158 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_875 - ID 13 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20917 1 0 0 Non Coding 21802 0 1 1 UTR 52 213 0 3 Phase 0 117 186 0 0 Coding 665 0 558 1 Phase 1 106 0 185 0 Intron 232 0 0 49 Phase 2 108 0 0 185 Precision Recall F1 Precision Recall F1 Intergenic 0.95660 0.99995 0.97780 Non Coding 0.98504 0.99991 0.99242 UTR 0.99533 0.79478 0.88382 Phase 0 1.00000 0.61386 0.76074 Coding 1.00000 0.45588 0.62626 Phase 1 0.99462 0.63574 0.77568 Intron 0.92453 0.17438 0.29341 Phase 2 0.99462 0.63140 0.77244 Subgenic 0.99345 0.40332 0.57372 Coding 0.99642 0.62683 0.76955 Genic 0.99394 0.46249 0.63125 BP_Extractor for Sequence contig_948 - ID 14 Forward for Sequence contig_948 - ID 14 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5698 0 0 0 Non Coding 5700 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99965 1.00000 0.99982 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 Reverse for Sequence contig_948 - ID 14 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5700 0 0 0 Non Coding 5700 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_994 - ID 15 Forward for Sequence contig_994 - ID 15 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13179 0 0 0 Non Coding 13179 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99985 1.00000 0.99992 Non Coding 0.99985 1.00000 0.99992 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_994 - ID 15 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13178 0 0 0 Non Coding 13176 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 3 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99977 1.00000 0.99989 Non Coding 0.99962 1.00000 0.99981 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_1019 - ID 16 Forward for Sequence contig_1019 - ID 16 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 47764 86 56 156 Non Coding 53588 517 511 524 UTR 117 1466 86 26 Phase 0 49 2339 1 0 Coding 149 12 8350 139 Phase 1 47 0 2345 1 Intron 166 10 79 3640 Phase 2 47 1 0 2332 Precision Recall F1 Precision Recall F1 Intergenic 0.99104 0.99380 0.99242 Non Coding 0.99734 0.97185 0.98443 UTR 0.93139 0.86490 0.89691 Phase 0 0.81869 0.97907 0.89173 Coding 0.97422 0.96532 0.96975 Phase 1 0.82079 0.97994 0.89333 Intron 0.91896 0.93453 0.92668 Phase 2 0.81624 0.97983 0.89059 Subgenic 0.95675 0.95576 0.95625 Coding 0.81857 0.97961 0.89188 Genic 0.95392 0.94494 0.94941 Reverse for Sequence contig_1019 - ID 16 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 45840 21 303 31 Non Coding 52232 856 863 882 UTR 100 1179 59 22 Phase 0 126 2380 2 0 Coding 269 11 9310 162 Phase 1 114 0 2372 1 Intron 462 17 39 4477 Phase 2 119 1 0 2354 Precision Recall F1 Precision Recall F1 Intergenic 0.98219 0.99232 0.98723 Non Coding 0.99317 0.95257 0.97245 UTR 0.96010 0.86691 0.91113 Phase 0 0.73525 0.94896 0.82855 Coding 0.95871 0.95468 0.95669 Phase 1 0.73278 0.95376 0.82879 Intron 0.95418 0.89630 0.92433 Phase 2 0.72722 0.95150 0.82437 Subgenic 0.95723 0.93490 0.94593 Coding 0.73175 0.95140 0.82724 Genic 0.95746 0.92916 0.94310 BP_Extractor for Sequence contig_1021 - ID 17 Forward for Sequence contig_1021 - ID 17 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12105 0 0 0 Non Coding 12100 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 0 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99959 1.00000 0.99979 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN NaN NaN Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN Reverse for Sequence contig_1021 - ID 17 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12105 0 0 0 Non Coding 12105 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_1070 - ID 18 Forward for Sequence contig_1070 - ID 18 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6682 0 0 0 Non Coding 6862 0 0 0 UTR 58 0 0 0 Phase 0 182 0 0 0 Coding 632 0 0 0 Phase 1 174 0 0 0 Intron 27 0 0 0 Phase 2 181 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90310 1.00000 0.94908 Non Coding 0.92742 1.00000 0.96234 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_1070 - ID 18 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7017 0 0 0 Non Coding 7173 0 0 0 UTR 49 0 0 0 Phase 0 68 0 0 0 Coding 314 0 0 0 Phase 1 86 0 0 0 Intron 19 0 0 0 Phase 2 72 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94837 1.00000 0.97350 Non Coding 0.96946 1.00000 0.98449 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_1076 - ID 19 Forward for Sequence contig_1076 - ID 19 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 78250 6 0 0 Non Coding 79899 1 1 1 UTR 324 223 0 0 Phase 0 773 287 0 0 Coding 3165 0 862 0 Phase 1 769 0 287 0 Intron 232 0 2 0 Phase 2 759 0 0 287 Precision Recall F1 Precision Recall F1 Intergenic 0.95461 0.99992 0.97674 Non Coding 0.97201 0.99996 0.98579 UTR 0.97380 0.40768 0.57474 Phase 0 0.99653 0.27075 0.42582 Coding 0.99769 0.21406 0.35248 Phase 1 0.99653 0.27178 0.42708 Intron NaN 0.00000 0.00000 Phase 2 0.99653 0.27438 0.43028 Subgenic 0.99769 0.20230 0.33639 Coding 0.99653 0.27230 0.42772 Genic 0.99268 0.22567 0.36773 Reverse for Sequence contig_1076 - ID 19 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 66408 19 60 1 Non Coding 71740 407 419 426 UTR 102 1264 44 4 Phase 0 122 3265 0 1 Coding 546 29 10870 96 Phase 1 95 0 3253 0 Intron 688 27 42 2864 Phase 2 91 0 0 3245 Precision Recall F1 Precision Recall F1 Intergenic 0.98028 0.99880 0.98945 Non Coding 0.99573 0.98285 0.98924 UTR 0.94399 0.89392 0.91827 Phase 0 0.88916 0.96370 0.92493 Coding 0.98675 0.94186 0.96378 Phase 1 0.88589 0.97162 0.92678 Intron 0.96594 0.79094 0.86972 Phase 2 0.88371 0.97272 0.92608 Subgenic 0.98233 0.90582 0.94252 Coding 0.88626 0.96932 0.92593 Genic 0.97898 0.90480 0.94043 BP_Extractor for Sequence contig_1084 - ID 20 Forward for Sequence contig_1084 - ID 20 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 47847 1 133 160 Non Coding 53111 344 369 376 UTR 174 110 17 43 Phase 0 511 911 3 2 Coding 1914 6 3604 57 Phase 1 519 0 886 2 Intron 1351 2 23 2975 Phase 2 499 4 1 879 Precision Recall F1 Precision Recall F1 Intergenic 0.93294 0.99389 0.96245 Non Coding 0.97202 0.97991 0.97595 UTR 0.92437 0.31977 0.47516 Phase 0 0.72359 0.63840 0.67833 Coding 0.95420 0.64576 0.77025 Phase 1 0.70373 0.62971 0.66467 Intron 0.91963 0.68375 0.78434 Phase 2 0.69817 0.63557 0.66540 Subgenic 0.93825 0.66240 0.77656 Coding 0.70850 0.63457 0.66950 Genic 0.93802 0.65093 0.76854 Reverse for Sequence contig_1084 - ID 20 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 44604 16 58 23 Non Coding 52889 662 665 664 UTR 78 731 23 21 Phase 0 13 1160 2 0 Coding 133 26 5254 93 Phase 1 24 0 1157 3 Intron 838 10 137 6372 Phase 2 19 2 0 1157 Precision Recall F1 Precision Recall F1 Intergenic 0.97702 0.99783 0.98732 Non Coding 0.99894 0.96372 0.98102 UTR 0.93359 0.85698 0.89364 Phase 0 0.63596 0.98723 0.77359 Coding 0.96016 0.95423 0.95719 Phase 1 0.63432 0.97720 0.76928 Intron 0.97895 0.86611 0.91908 Phase 2 0.63432 0.98217 0.77082 Subgenic 0.97037 0.90383 0.93592 Coding 0.63487 0.98219 0.77123 Genic 0.96811 0.90092 0.93331 BP_Extractor for Sequence contig_1238 - ID 21 Forward for Sequence contig_1238 - ID 21 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24795 6 0 0 Non Coding 38662 81 87 95 UTR 36 462 6 10 Phase 0 33 969 0 0 Coding 236 2 3071 42 Phase 1 35 0 963 0 Intron 225 5 73 12951 Phase 2 40 0 0 955 Precision Recall F1 Precision Recall F1 Intergenic 0.98035 0.99976 0.98996 Non Coding 0.99721 0.99324 0.99522 UTR 0.97263 0.89883 0.93428 Phase 0 0.92286 0.96707 0.94444 Coding 0.97492 0.91644 0.94478 Phase 1 0.91714 0.96493 0.94043 Intron 0.99600 0.97714 0.98648 Phase 2 0.90952 0.95980 0.93399 Subgenic 0.99189 0.96489 0.97820 Coding 0.91651 0.96394 0.93963 Genic 0.99134 0.96291 0.97692 Reverse for Sequence contig_1238 - ID 21 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 36967 11 42 14 Non Coding 40146 233 236 243 UTR 272 129 10 12 Phase 0 32 328 0 0 Coding 128 3 1572 28 Phase 1 28 0 325 0 Intron 1384 2 59 1287 Phase 2 31 0 0 318 Precision Recall F1 Precision Recall F1 Intergenic 0.95396 0.99819 0.97558 Non Coding 0.99774 0.98257 0.99010 UTR 0.88966 0.30496 0.45423 Phase 0 0.58467 0.91111 0.71227 Coding 0.93405 0.90815 0.92091 Phase 1 0.57932 0.92068 0.71116 Intron 0.95973 0.47108 0.63197 Phase 2 0.56684 0.91117 0.69890 Subgenic 0.94544 0.64060 0.76372 Coding 0.57695 0.91431 0.70747 Genic 0.94288 0.61154 0.74190 BP_Extractor for Sequence contig_1244 - ID 22 Forward for Sequence contig_1244 - ID 22 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10235 0 0 0 Non Coding 10272 0 0 0 UTR 40 0 0 0 Phase 0 138 0 0 0 Coding 391 0 0 0 Phase 1 131 0 0 0 Intron 6 0 0 0 Phase 2 131 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95905 1.00000 0.97910 Non Coding 0.96252 1.00000 0.98090 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_1244 - ID 22 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1694 8 190 118 Non Coding 5502 395 395 384 UTR 13 149 25 38 Phase 0 30 1295 0 3 Coding 19 9 4797 261 Phase 1 36 1 1293 0 Intron 45 9 61 3236 Phase 2 31 0 3 1304 Precision Recall F1 Precision Recall F1 Intergenic 0.95652 0.84279 0.89606 Non Coding 0.98268 0.82415 0.89646 UTR 0.85143 0.66222 0.74500 Phase 0 0.76582 0.97515 0.85790 Coding 0.94559 0.94318 0.94438 Phase 1 0.76464 0.97218 0.85601 Intron 0.88585 0.96568 0.92404 Phase 2 0.77114 0.97459 0.86101 Subgenic 0.92058 0.95212 0.93608 Coding 0.76720 0.97397 0.85831 Genic 0.91922 0.94459 0.93173 BP_Extractor for Sequence contig_1246 - ID 23 Forward for Sequence contig_1246 - ID 23 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 68519 15 39 313 Non Coding 80535 155 153 164 UTR 256 1099 36 47 Phase 0 310 2711 0 0 Coding 1872 18 8482 187 Phase 1 238 0 2713 0 Intron 1162 7 41 7841 Phase 2 253 0 0 2702 Precision Recall F1 Precision Recall F1 Intergenic 0.95418 0.99467 0.97401 Non Coding 0.99015 0.99417 0.99216 UTR 0.96488 0.76426 0.85293 Phase 0 0.94592 0.89738 0.92101 Coding 0.98651 0.80330 0.88552 Phase 1 0.94662 0.91935 0.93278 Intron 0.93479 0.86631 0.89925 Phase 2 0.94278 0.91438 0.92836 Subgenic 0.96097 0.83238 0.89206 Coding 0.94510 0.91027 0.92736 Genic 0.96121 0.82773 0.88949 Reverse for Sequence contig_1246 - ID 23 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 85535 23 86 0 Non Coding 88131 69 67 72 UTR 116 247 8 0 Phase 0 252 297 0 0 Coding 900 10 1004 0 Phase 1 225 0 299 0 Intron 2005 0 0 0 Phase 2 228 0 0 294 Precision Recall F1 Precision Recall F1 Intergenic 0.96589 0.99873 0.98203 Non Coding 0.99206 0.99765 0.99485 UTR 0.88214 0.66577 0.75883 Phase 0 0.81148 0.54098 0.64918 Coding 0.91439 0.52456 0.66667 Phase 1 0.81694 0.57061 0.67191 Intron NaN 0.00000 0.00000 Phase 2 0.80328 0.56322 0.66216 Subgenic 0.91439 0.25619 0.40024 Coding 0.81056 0.55799 0.66097 Genic 0.90784 0.29161 0.44143 BP_Extractor for Sequence contig_1263 - ID 24 Forward for Sequence contig_1263 - ID 24 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6591 0 0 0 Non Coding 6591 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_1263 - ID 24 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6589 0 0 0 Non Coding 6588 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99970 1.00000 0.99985 Non Coding 0.99954 1.00000 0.99977 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_1264 - ID 25 Forward for Sequence contig_1264 - ID 25 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12859 0 0 0 Non Coding 13106 0 0 0 UTR 104 0 0 0 Phase 0 147 0 0 0 Coding 585 0 0 0 Phase 1 147 0 0 0 Intron 2 0 0 0 Phase 2 150 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94900 1.00000 0.97383 Non Coding 0.96723 1.00000 0.98334 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_1264 - ID 25 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8281 0 27 12 Non Coding 12959 43 40 45 UTR 5 83 9 11 Phase 0 13 141 1 0 Coding 58 2 504 5 Phase 1 10 0 143 0 Intron 23 1 12 4517 Phase 2 16 0 0 139 Precision Recall F1 Precision Recall F1 Intergenic 0.98972 0.99531 0.99251 Non Coding 0.99700 0.99022 0.99360 UTR 0.96512 0.76852 0.85567 Phase 0 0.76630 0.90968 0.83186 Coding 0.91304 0.88576 0.89920 Phase 1 0.77717 0.93464 0.84866 Intron 0.99384 0.99209 0.99297 Phase 2 0.75543 0.89677 0.82006 Subgenic 0.98509 0.98028 0.98268 Coding 0.76630 0.91361 0.83350 Genic 0.98476 0.97591 0.98031 BP_Extractor for Sequence contig_1265 - ID 26 Forward for Sequence contig_1265 - ID 26 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12127 3 18 18 Non Coding 15497 72 74 77 UTR 31 377 20 26 Phase 0 18 1196 0 0 Coding 22 13 3703 56 Phase 1 25 0 1194 0 Intron 30 7 63 2854 Phase 2 24 0 0 1191 Precision Recall F1 Precision Recall F1 Intergenic 0.99320 0.99679 0.99500 Non Coding 0.99570 0.98581 0.99073 UTR 0.94250 0.83040 0.88290 Phase 0 0.94322 0.98517 0.96374 Coding 0.97345 0.97601 0.97473 Phase 1 0.94164 0.97949 0.96019 Intron 0.96615 0.96615 0.96615 Phase 2 0.93927 0.98025 0.95932 Subgenic 0.97026 0.97170 0.97098 Coding 0.94138 0.98163 0.96108 Genic 0.96871 0.96279 0.96574 Reverse for Sequence contig_1265 - ID 26 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17621 0 0 0 Non Coding 18081 0 0 0 UTR 79 0 0 0 Phase 0 438 0 0 0 Coding 1614 0 0 0 Phase 1 428 0 0 0 Intron 54 0 0 0 Phase 2 421 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90980 1.00000 0.95277 Non Coding 0.93355 1.00000 0.96563 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_1276 - ID 27 Forward for Sequence contig_1276 - ID 27 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24843 0 0 0 Non Coding 25112 1 2 2 UTR 20 231 0 0 Phase 0 4 276 0 0 Coding 10 0 831 0 Phase 1 3 0 275 0 Intron 0 18 0 0 Phase 2 3 0 0 275 Precision Recall F1 Precision Recall F1 Intergenic 0.99879 1.00000 0.99940 Non Coding 0.99960 0.99980 0.99970 UTR 0.92771 0.92032 0.92400 Phase 0 0.99639 0.98571 0.99102 Coding 1.00000 0.98811 0.99402 Phase 1 0.99278 0.98921 0.99099 Intron NaN 0.00000 0.00000 Phase 2 0.99278 0.98921 0.99099 Subgenic 1.00000 0.96740 0.98343 Coding 0.99398 0.98804 0.99100 Genic 0.98333 0.95676 0.96986 Reverse for Sequence contig_1276 - ID 27 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13525 25 0 141 Non Coding 21821 148 154 145 UTR 136 493 17 42 Phase 0 17 1212 0 0 Coding 32 13 4013 53 Phase 1 15 0 1206 0 Intron 168 68 50 7177 Phase 2 20 0 0 1215 Precision Recall F1 Precision Recall F1 Intergenic 0.97576 0.98788 0.98178 Non Coding 0.99762 0.97993 0.98870 UTR 0.82304 0.71657 0.76612 Phase 0 0.89118 0.98617 0.93627 Coding 0.98358 0.97616 0.97986 Phase 1 0.88676 0.98771 0.93452 Intron 0.96816 0.96168 0.96491 Phase 2 0.89338 0.98381 0.93642 Subgenic 0.97364 0.96682 0.97022 Coding 0.89044 0.98589 0.93574 Genic 0.96618 0.95278 0.95943 BP_Extractor for Sequence contig_1293 - ID 28 Forward for Sequence contig_1293 - ID 28 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21689 42 211 103 Non Coding 26006 397 411 399 UTR 51 502 32 50 Phase 0 20 1484 0 0 Coding 39 21 5347 66 Phase 1 19 0 1470 0 Intron 19 24 53 3463 Phase 2 24 0 0 1482 Precision Recall F1 Precision Recall F1 Intergenic 0.99500 0.98385 0.98939 Non Coding 0.99758 0.95565 0.97616 UTR 0.85229 0.79055 0.82026 Phase 0 0.78894 0.98670 0.87681 Coding 0.94755 0.97698 0.96204 Phase 1 0.78150 0.98724 0.87240 Intron 0.94052 0.97303 0.95650 Phase 2 0.78788 0.98406 0.87511 Subgenic 0.94477 0.97542 0.95985 Coding 0.78611 0.98600 0.87478 Genic 0.93928 0.96328 0.95113 Reverse for Sequence contig_1293 - ID 28 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23453 10 0 0 Non Coding 28023 30 26 34 UTR 165 608 10 3 Phase 0 301 897 0 0 Coding 1065 3 2760 20 Phase 1 307 0 901 0 Intron 123 0 11 3481 Phase 2 300 0 0 893 Precision Recall F1 Precision Recall F1 Intergenic 0.94546 0.99957 0.97176 Non Coding 0.96861 0.99680 0.98250 UTR 0.97907 0.77354 0.86425 Phase 0 0.96764 0.74875 0.84424 Coding 0.99245 0.71726 0.83270 Phase 1 0.97195 0.74586 0.84403 Intron 0.99344 0.96293 0.97795 Phase 2 0.96332 0.74853 0.84245 Subgenic 0.99300 0.83626 0.90791 Coding 0.96764 0.74771 0.84357 Genic 0.99175 0.83028 0.90386 BP_Extractor for Sequence contig_1310 - ID 29 Forward for Sequence contig_1310 - ID 29 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23047 0 0 0 Non Coding 24037 5 4 4 UTR 59 593 8 0 Phase 0 158 447 0 0 Coding 443 0 1346 6 Phase 1 161 0 448 0 Intron 14 2 2 355 Phase 2 163 0 0 448 Precision Recall F1 Precision Recall F1 Intergenic 0.97810 1.00000 0.98893 Non Coding 0.98034 0.99946 0.98981 UTR 0.99664 0.89848 0.94502 Phase 0 0.98894 0.73884 0.84579 Coding 0.99263 0.74986 0.85433 Phase 1 0.99115 0.73563 0.84449 Intron 0.98338 0.95174 0.96730 Phase 2 0.99115 0.73322 0.84290 Subgenic 0.99068 0.78459 0.87568 Coding 0.99041 0.73589 0.84439 Genic 0.99221 0.81117 0.89261 Reverse for Sequence contig_1310 - ID 29 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21274 26 0 0 Non Coding 23021 11 6 5 UTR 84 700 4 0 Phase 0 404 528 3 0 Coding 1554 0 1617 0 Phase 1 412 0 533 4 Intron 545 0 5 66 Phase 2 412 3 0 533 Precision Recall F1 Precision Recall F1 Intergenic 0.90694 0.99878 0.95064 Non Coding 0.94936 0.99905 0.97357 UTR 0.96419 0.88832 0.92470 Phase 0 0.97417 0.56471 0.71496 Coding 0.99446 0.50993 0.67417 Phase 1 0.98339 0.56164 0.71496 Intron 1.00000 0.10714 0.19355 Phase 2 0.98339 0.56224 0.71544 Subgenic 0.99468 0.44442 0.61435 Coding 0.98032 0.56285 0.71512 Genic 0.98553 0.52087 0.68154 BP_Extractor for Sequence contig_1359 - ID 30 Forward for Sequence contig_1359 - ID 30 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15877 5 0 0 Non Coding 16587 10 11 14 UTR 28 365 6 0 Phase 0 3 535 0 0 Coding 12 2 1626 2 Phase 1 1 0 534 0 Intron 5 0 3 295 Phase 2 0 0 0 531 Precision Recall F1 Precision Recall F1 Intergenic 0.99717 0.99969 0.99843 Non Coding 0.99976 0.99789 0.99883 UTR 0.98118 0.91479 0.94682 Phase 0 0.98165 0.99442 0.98800 Coding 0.99450 0.99026 0.99237 Phase 1 0.97982 0.99813 0.98889 Intron 0.99327 0.97360 0.98333 Phase 2 0.97431 1.00000 0.98699 Subgenic 0.99431 0.98766 0.99097 Coding 0.97859 0.99751 0.98796 Genic 0.99219 0.97526 0.98365 Reverse for Sequence contig_1359 - ID 30 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16796 3 0 0 Non Coding 17246 2 0 0 UTR 60 279 0 0 Phase 0 127 196 0 0 Coding 342 1 591 0 Phase 1 130 0 198 0 Intron 7 0 3 144 Phase 2 129 0 0 198 Precision Recall F1 Precision Recall F1 Intergenic 0.97623 0.99982 0.98788 Non Coding 0.97811 0.99988 0.98888 UTR 0.98587 0.82301 0.89711 Phase 0 0.98990 0.60681 0.75240 Coding 0.99495 0.63276 0.77356 Phase 1 1.00000 0.60366 0.75285 Intron 1.00000 0.93506 0.96644 Phase 2 1.00000 0.60550 0.75429 Subgenic 0.99593 0.67555 0.80504 Coding 0.99663 0.60532 0.75318 Genic 0.99314 0.71058 0.82843 BP_Extractor for Sequence contig_1360 - ID 31 Forward for Sequence contig_1360 - ID 31 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19342 4 88 74 Non Coding 30726 105 104 118 UTR 5 96 19 7 Phase 0 24 771 0 0 Coding 5 17 2480 59 Phase 1 28 0 773 1 Intron 107 6 44 11079 Phase 2 23 1 0 758 Precision Recall F1 Precision Recall F1 Intergenic 0.99399 0.99149 0.99274 Non Coding 0.99757 0.98947 0.99350 UTR 0.78049 0.75591 0.76800 Phase 0 0.87913 0.96981 0.92225 Coding 0.94261 0.96837 0.95532 Phase 1 0.88141 0.96384 0.92079 Intron 0.98752 0.98603 0.98677 Phase 2 0.86431 0.96931 0.91380 Subgenic 0.97899 0.98275 0.98087 Coding 0.87495 0.96763 0.91896 Genic 0.97724 0.98068 0.97896 Reverse for Sequence contig_1360 - ID 31 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27378 1 0 0 Non Coding 31597 8 5 10 UTR 12 195 2 0 Phase 0 10 593 0 0 Coding 34 2 1791 3 Phase 1 11 0 596 0 Intron 1 10 10 3993 Phase 2 11 0 0 591 Precision Recall F1 Precision Recall F1 Intergenic 0.99829 0.99996 0.99912 Non Coding 0.99899 0.99927 0.99913 UTR 0.93750 0.93301 0.93525 Phase 0 0.98669 0.98342 0.98505 Coding 0.99334 0.97869 0.98596 Phase 1 0.99168 0.98188 0.98675 Intron 0.99925 0.99477 0.99700 Phase 2 0.98336 0.98173 0.98254 Subgenic 0.99741 0.98973 0.99356 Coding 0.98724 0.98234 0.98479 Genic 0.99534 0.98777 0.99154 BP_Extractor for Sequence contig_1364 - ID 32 Forward for Sequence contig_1364 - ID 32 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4234 0 0 0 Non Coding 4399 0 0 0 UTR 2 0 0 0 Phase 0 39 0 0 0 Coding 249 0 0 0 Phase 1 38 0 0 0 Intron 29 0 0 0 Phase 2 38 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93797 1.00000 0.96799 Non Coding 0.97452 1.00000 0.98710 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_1364 - ID 32 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4514 0 0 0 Non Coding 4514 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_1447 - ID 33 Forward for Sequence contig_1447 - ID 33 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24789 1 0 0 Non Coding 27472 4 2 2 UTR 81 398 3 0 Phase 0 411 243 0 0 Coding 1414 8 736 1 Phase 1 425 0 245 0 Intron 1087 0 2 955 Phase 2 426 0 0 245 Precision Recall F1 Precision Recall F1 Intergenic 0.90567 0.99996 0.95048 Non Coding 0.95608 0.99971 0.97741 UTR 0.97789 0.82573 0.89539 Phase 0 0.98381 0.37156 0.53940 Coding 0.99325 0.34090 0.50759 Phase 1 0.99190 0.36567 0.53435 Intron 0.99895 0.46722 0.63667 Phase 2 0.99190 0.36513 0.53377 Subgenic 0.99646 0.40233 0.57322 Coding 0.98920 0.36742 0.53582 Genic 0.99287 0.44589 0.61541 Reverse for Sequence contig_1447 - ID 33 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25277 0 0 0 Non Coding 27334 3 1 4 UTR 369 181 0 0 Phase 0 582 144 0 0 Coding 2117 0 439 5 Phase 1 557 0 146 0 Intron 826 0 2 259 Phase 2 561 0 0 143 Precision Recall F1 Precision Recall F1 Intergenic 0.88415 1.00000 0.93851 Non Coding 0.94145 0.99971 0.96970 UTR 1.00000 0.32909 0.49521 Phase 0 0.97959 0.19835 0.32990 Coding 0.99546 0.17142 0.29247 Phase 1 0.99320 0.20768 0.34353 Intron 0.98106 0.23827 0.38342 Phase 2 0.97279 0.20312 0.33608 Subgenic 0.99007 0.19134 0.32070 Coding 0.98186 0.20300 0.33644 Genic 0.99210 0.20939 0.34579 BP_Extractor for Sequence contig_1515 - ID 34 Forward for Sequence contig_1515 - ID 34 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 53739 5 392 147 Non Coding 54905 321 344 352 UTR 56 173 0 10 Phase 0 82 249 0 0 Coding 160 2 1310 33 Phase 1 57 0 226 0 Intron 19 0 8 762 Phase 2 62 0 0 218 Precision Recall F1 Precision Recall F1 Intergenic 0.99565 0.98998 0.99280 Non Coding 0.99635 0.98181 0.98903 UTR 0.96111 0.72385 0.82578 Phase 0 0.43684 0.75227 0.55272 Coding 0.76608 0.87043 0.81493 Phase 1 0.39649 0.79859 0.52989 Intron 0.80042 0.96578 0.87536 Phase 2 0.38246 0.77857 0.51294 Subgenic 0.77836 0.90323 0.83616 Coding 0.40526 0.77517 0.53226 Genic 0.78994 0.88630 0.83535 Reverse for Sequence contig_1515 - ID 34 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 30597 27 55 72 Non Coding 49244 267 256 266 UTR 294 700 35 45 Phase 0 237 2015 5 0 Coding 1100 26 6706 149 Phase 1 242 0 2025 7 Intron 1607 23 64 15316 Phase 2 233 5 0 2014 Precision Recall F1 Precision Recall F1 Intergenic 0.91068 0.99499 0.95097 Non Coding 0.98575 0.98423 0.98499 UTR 0.90206 0.65177 0.75676 Phase 0 0.88107 0.89278 0.88688 Coding 0.97755 0.84025 0.90371 Phase 1 0.88583 0.89050 0.88816 Intron 0.98293 0.90041 0.93986 Phase 2 0.88063 0.89432 0.88742 Subgenic 0.98129 0.88120 0.92855 Coding 0.88251 0.89253 0.88749 Genic 0.97864 0.87174 0.92210 BP_Extractor for Sequence contig_1562 - ID 35 Forward for Sequence contig_1562 - ID 35 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 83979 10 16 53 Non Coding 89583 69 66 64 UTR 158 640 29 7 Phase 0 398 1003 6 0 Coding 1449 23 3177 33 Phase 1 377 0 1006 9 Intron 114 0 12 4258 Phase 2 366 6 0 1005 Precision Recall F1 Precision Recall F1 Intergenic 0.97992 0.99906 0.98940 Non Coding 0.98742 0.99778 0.99258 UTR 0.95097 0.76739 0.84937 Phase 0 0.93043 0.71286 0.80724 Coding 0.98237 0.67856 0.80268 Phase 1 0.93321 0.72270 0.81457 Intron 0.97863 0.97126 0.97493 Phase 2 0.93228 0.72985 0.81874 Subgenic 0.98022 0.82010 0.89304 Coding 0.93197 0.72174 0.81350 Genic 0.97784 0.81566 0.88942 Reverse for Sequence contig_1562 - ID 35 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 58546 39 250 159 Non Coding 72941 1039 1123 1123 UTR 182 1615 33 109 Phase 0 245 5717 0 2 Coding 1127 30 19822 493 Phase 1 246 2 5633 0 Intron 216 48 169 11120 Phase 2 252 0 2 5633 Precision Recall F1 Precision Recall F1 Intergenic 0.97461 0.99241 0.98343 Non Coding 0.98992 0.95690 0.97313 UTR 0.93245 0.83290 0.87987 Phase 0 0.84596 0.95858 0.89876 Coding 0.97771 0.92316 0.94965 Phase 1 0.83353 0.95783 0.89137 Intron 0.93595 0.96252 0.94905 Phase 2 0.83353 0.95685 0.89095 Subgenic 0.96228 0.93693 0.94943 Coding 0.83767 0.95776 0.89370 Genic 0.96075 0.93116 0.94572 BP_Extractor for Sequence contig_1634 - ID 36 Forward for Sequence contig_1634 - ID 36 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11804 0 0 0 Non Coding 11804 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_1634 - ID 36 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8113 4 15 97 Non Coding 9925 33 23 28 UTR 8 40 24 3 Phase 0 1 593 0 0 Coding 0 0 1829 2 Phase 1 0 0 603 0 Intron 47 8 10 1604 Phase 2 0 0 0 598 Precision Recall F1 Precision Recall F1 Intergenic 0.99327 0.98590 0.98957 Non Coding 0.99990 0.99161 0.99574 UTR 0.76923 0.53333 0.62992 Phase 0 0.94728 0.99832 0.97213 Coding 0.97391 0.99891 0.98625 Phase 1 0.96326 1.00000 0.98129 Intron 0.94021 0.96105 0.95052 Phase 2 0.95527 1.00000 0.97712 Subgenic 0.95787 0.98086 0.96923 Coding 0.95527 0.99944 0.97686 Genic 0.95517 0.97147 0.96325 BP_Extractor for Sequence contig_1678 - ID 37 Forward for Sequence contig_1678 - ID 37 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4703 0 0 0 Non Coding 4981 0 0 0 UTR 53 0 0 0 Phase 0 82 0 0 0 Coding 351 0 0 0 Phase 1 83 0 0 0 Intron 125 0 0 0 Phase 2 86 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89889 1.00000 0.94675 Non Coding 0.95203 1.00000 0.97542 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_1678 - ID 37 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4655 0 0 0 Non Coding 4743 0 0 0 UTR 52 0 0 0 Phase 0 163 0 0 0 Coding 515 0 0 0 Phase 1 164 0 0 0 Intron 10 0 0 0 Phase 2 162 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88972 1.00000 0.94164 Non Coding 0.90654 1.00000 0.95098 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_1761 - ID 38 Forward for Sequence contig_1761 - ID 38 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10199 0 0 0 Non Coding 10199 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_1761 - ID 38 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7970 2 1 0 Non Coding 9217 7 8 7 UTR 16 256 7 0 Phase 0 6 314 0 0 Coding 36 5 955 0 Phase 1 7 0 313 0 Intron 45 1 0 905 Phase 2 6 0 0 314 Precision Recall F1 Precision Recall F1 Intergenic 0.98798 0.99962 0.99377 Non Coding 0.99794 0.99762 0.99778 UTR 0.96970 0.91756 0.94291 Phase 0 0.97819 0.98125 0.97972 Coding 0.99169 0.95884 0.97499 Phase 1 0.97508 0.97813 0.97660 Intron 1.00000 0.95163 0.97522 Phase 2 0.97819 0.98125 0.97972 Subgenic 0.99572 0.95532 0.97510 Coding 0.97715 0.98021 0.97868 Genic 0.99250 0.95058 0.97109 BP_Extractor for Sequence contig_1762 - ID 39 Forward for Sequence contig_1762 - ID 39 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3239 7 0 0 Non Coding 6782 81 93 94 UTR 17 200 17 8 Phase 0 8 1193 1 0 Coding 0 0 3788 70 Phase 1 12 0 1182 2 Intron 1 0 23 3270 Phase 2 10 2 0 1180 Precision Recall F1 Precision Recall F1 Intergenic 0.99447 0.99784 0.99616 Non Coding 0.99560 0.96199 0.97850 UTR 0.96618 0.82645 0.89087 Phase 0 0.93495 0.99251 0.96287 Coding 0.98955 0.98186 0.98569 Phase 1 0.92633 0.98829 0.95631 Intron 0.97670 0.99271 0.98464 Phase 2 0.92476 0.98993 0.95624 Subgenic 0.98356 0.98686 0.98520 Coding 0.92868 0.99025 0.95848 Genic 0.98307 0.98161 0.98234 Reverse for Sequence contig_1762 - ID 39 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10640 0 0 0 Non Coding 10640 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_1865 - ID 40 Forward for Sequence contig_1865 - ID 40 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8703 0 0 0 Non Coding 8728 0 0 0 UTR 20 0 0 0 Phase 0 10 0 0 0 Coding 33 0 0 0 Phase 1 9 0 0 0 Intron 0 0 0 0 Phase 2 9 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99395 1.00000 0.99696 Non Coding 0.99680 1.00000 0.99840 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_1865 - ID 40 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6031 2 0 43 Non Coding 7927 7 6 6 UTR 0 289 11 0 Phase 0 1 269 0 0 Coding 0 0 810 2 Phase 1 0 0 270 0 Intron 144 1 7 1416 Phase 2 0 0 0 270 Precision Recall F1 Precision Recall F1 Intergenic 0.97668 0.99259 0.98457 Non Coding 0.99987 0.99761 0.99874 UTR 0.98973 0.96333 0.97635 Phase 0 0.97464 0.99630 0.98535 Coding 0.97826 0.99754 0.98780 Phase 1 0.97826 1.00000 0.98901 Intron 0.96920 0.90306 0.93496 Phase 2 0.97826 1.00000 0.98901 Subgenic 0.97248 0.93529 0.95352 Coding 0.97705 0.99877 0.98779 Genic 0.97443 0.93843 0.95609 BP_Extractor for Sequence contig_1916 - ID 41 Forward for Sequence contig_1916 - ID 41 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6670 0 1 0 Non Coding 8744 9 10 10 UTR 21 122 0 10 Phase 0 9 355 0 0 Coding 24 2 1071 4 Phase 1 9 0 354 0 Intron 9 5 20 1904 Phase 2 9 0 0 354 Precision Recall F1 Precision Recall F1 Intergenic 0.99197 0.99985 0.99589 Non Coding 0.99692 0.99669 0.99681 UTR 0.94574 0.79739 0.86525 Phase 0 0.97527 0.97527 0.97527 Coding 0.98077 0.97275 0.97674 Phase 1 0.97253 0.97521 0.97387 Intron 0.99270 0.98246 0.98755 Phase 2 0.97253 0.97521 0.97387 Subgenic 0.98837 0.97894 0.98363 Coding 0.97344 0.97523 0.97434 Genic 0.98662 0.97024 0.97836 Reverse for Sequence contig_1916 - ID 41 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9863 0 0 0 Non Coding 9863 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_1930 - ID 42 Forward for Sequence contig_1930 - ID 42 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31779 57 143 45 Non Coding 39534 428 439 436 UTR 101 556 37 24 Phase 0 181 2775 1 0 Coding 607 30 9333 144 Phase 1 187 0 2764 1 Intron 116 44 99 6596 Phase 2 197 1 0 2767 Precision Recall F1 Precision Recall F1 Intergenic 0.97473 0.99235 0.98346 Non Coding 0.98591 0.96809 0.97692 UTR 0.80932 0.77437 0.79146 Phase 0 0.86610 0.93845 0.90083 Coding 0.97097 0.92278 0.94626 Phase 1 0.86267 0.93631 0.89799 Intron 0.96872 0.96222 0.96546 Phase 2 0.86361 0.93322 0.89707 Subgenic 0.97004 0.93871 0.95412 Coding 0.86413 0.93599 0.89863 Genic 0.96358 0.93204 0.94755 Reverse for Sequence contig_1930 - ID 42 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 40755 7 0 0 Non Coding 45542 32 48 39 UTR 84 632 2 8 Phase 0 109 1236 0 0 Coding 536 0 3723 22 Phase 1 125 0 1220 0 Intron 26 3 79 3834 Phase 2 131 0 0 1229 Precision Recall F1 Precision Recall F1 Intergenic 0.98440 0.99983 0.99205 Non Coding 0.99205 0.99739 0.99471 UTR 0.98442 0.87052 0.92398 Phase 0 0.97476 0.91896 0.94604 Coding 0.97871 0.86966 0.92096 Phase 1 0.96215 0.90706 0.93379 Intron 0.99224 0.97260 0.98232 Phase 2 0.96924 0.90368 0.93531 Subgenic 0.98552 0.91901 0.95110 Coding 0.96872 0.90988 0.93838 Genic 0.98544 0.91507 0.94895 BP_Extractor for Sequence contig_1943 - ID 43 Forward for Sequence contig_1943 - ID 43 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8147 1 0 0 Non Coding 10083 7 2 5 UTR 73 51 10 0 Phase 0 24 129 0 0 Coding 112 5 396 2 Phase 1 21 0 134 0 Intron 624 0 2 1139 Phase 2 26 0 0 131 Precision Recall F1 Precision Recall F1 Intergenic 0.90967 0.99988 0.95264 Non Coding 0.99301 0.99861 0.99580 UTR 0.89474 0.38060 0.53403 Phase 0 0.94853 0.84314 0.89273 Coding 0.97059 0.76893 0.85807 Phase 1 0.98529 0.86452 0.92096 Intron 0.99825 0.64533 0.78390 Phase 2 0.96324 0.83439 0.89420 Subgenic 0.99096 0.67325 0.80178 Coding 0.96569 0.84731 0.90263 Genic 0.98755 0.65700 0.78905 Reverse for Sequence contig_1943 - ID 43 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4486 49 0 2 Non Coding 8328 10 13 14 UTR 24 703 12 15 Phase 0 17 719 0 0 Coding 7 5 2153 59 Phase 1 15 0 716 0 Intron 5 3 22 3017 Phase 2 15 0 0 715 Precision Recall F1 Precision Recall F1 Intergenic 0.99204 0.98876 0.99040 Non Coding 0.99439 0.99558 0.99498 UTR 0.92500 0.93236 0.92867 Phase 0 0.98628 0.97690 0.98157 Coding 0.98445 0.96808 0.97620 Phase 1 0.98217 0.97948 0.98082 Intron 0.97543 0.99015 0.98274 Phase 2 0.98080 0.97945 0.98012 Subgenic 0.97917 0.98084 0.98000 Coding 0.98308 0.97861 0.98084 Genic 0.97235 0.97477 0.97356 BP_Extractor for Sequence contig_2034 - ID 44 Forward for Sequence contig_2034 - ID 44 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14923 0 0 0 Non Coding 24422 31 31 32 UTR 58 187 1 6 Phase 0 141 1022 0 0 Coding 539 0 3146 45 Phase 1 143 1 1023 0 Intron 2513 3 15 6576 Phase 2 144 0 0 1022 Precision Recall F1 Precision Recall F1 Intergenic 0.82754 1.00000 0.90563 Non Coding 0.98278 0.99617 0.98943 UTR 0.98421 0.74206 0.84615 Phase 0 0.96964 0.87876 0.92197 Coding 0.99494 0.84343 0.91294 Phase 1 0.97059 0.87661 0.92121 Intron 0.99230 0.72208 0.83590 Phase 2 0.96964 0.87650 0.92072 Subgenic 0.99316 0.75734 0.85937 Coding 0.96996 0.87729 0.92130 Genic 0.99299 0.75705 0.85911 Reverse for Sequence contig_2034 - ID 44 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23411 8 0 0 Non Coding 24638 36 41 39 UTR 4 323 16 21 Phase 0 16 1057 16 0 Coding 0 8 3295 52 Phase 1 13 0 1052 17 Intron 0 0 16 858 Phase 2 18 16 0 1053 Precision Recall F1 Precision Recall F1 Intergenic 0.99983 0.99966 0.99974 Non Coding 0.99810 0.99531 0.99670 UTR 0.95280 0.88736 0.91892 Phase 0 0.95311 0.97062 0.96178 Coding 0.99038 0.98212 0.98623 Phase 1 0.94860 0.97227 0.96029 Intron 0.92159 0.98169 0.95069 Phase 2 0.94950 0.96872 0.95902 Subgenic 0.97534 0.98203 0.97867 Coding 0.95041 0.97053 0.96036 Genic 0.97368 0.97453 0.97410 BP_Extractor for Sequence contig_2259 - ID 45 Forward for Sequence contig_2259 - ID 45 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16315 0 0 0 Non Coding 16367 0 0 0 UTR 13 0 0 0 Phase 0 17 0 0 0 Coding 71 0 0 0 Phase 1 17 0 0 0 Intron 19 0 0 0 Phase 2 17 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99373 1.00000 0.99685 Non Coding 0.99689 1.00000 0.99844 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_2259 - ID 45 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13281 7 0 0 Non Coding 14473 30 31 30 UTR 39 178 13 0 Phase 0 39 578 0 0 Coding 124 0 1763 60 Phase 1 40 0 577 0 Intron 0 0 48 905 Phase 2 42 0 0 578 Precision Recall F1 Precision Recall F1 Intergenic 0.98788 0.99947 0.99364 Non Coding 0.99171 0.99375 0.99273 UTR 0.96216 0.77391 0.85783 Phase 0 0.95066 0.93679 0.94367 Coding 0.96656 0.90550 0.93503 Phase 1 0.94901 0.93517 0.94204 Intron 0.93782 0.94963 0.94369 Phase 2 0.95066 0.93226 0.94137 Subgenic 0.95662 0.92000 0.93795 Coding 0.95011 0.93474 0.94236 Genic 0.95696 0.90927 0.93250 BP_Extractor for Sequence contig_2266 - ID 46 Forward for Sequence contig_2266 - ID 46 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13659 7 104 69 Non Coding 22308 85 90 86 UTR 60 652 14 16 Phase 0 254 1601 0 0 Coding 757 8 4920 52 Phase 1 257 0 1596 0 Intron 509 8 20 7281 Phase 2 259 0 0 1600 Precision Recall F1 Precision Recall F1 Intergenic 0.91151 0.98699 0.94775 Non Coding 0.96663 0.98844 0.97741 UTR 0.96593 0.87871 0.92025 Phase 0 0.94958 0.86307 0.90426 Coding 0.97272 0.85759 0.91153 Phase 1 0.94662 0.86131 0.90195 Intron 0.98153 0.93131 0.95576 Phase 2 0.94899 0.86068 0.90268 Subgenic 0.97796 0.90011 0.93742 Coding 0.94840 0.86168 0.90296 Genic 0.97734 0.89900 0.93653 Reverse for Sequence contig_2266 - ID 46 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25104 0 0 0 Non Coding 26174 0 0 0 UTR 357 0 0 0 Phase 0 660 0 0 0 Coding 2434 0 0 0 Phase 1 652 0 0 0 Intron 241 0 0 0 Phase 2 650 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89224 1.00000 0.94305 Non Coding 0.93027 1.00000 0.96387 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_2307 - ID 47 Forward for Sequence contig_2307 - ID 47 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20602 0 0 0 Non Coding 24779 0 0 0 UTR 201 0 0 0 Phase 0 642 0 0 0 Coding 2312 0 0 0 Phase 1 631 0 0 0 Intron 3563 0 0 0 Phase 2 626 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.77225 1.00000 0.87149 Non Coding 0.92882 1.00000 0.96310 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_2307 - ID 47 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20623 1 2 11 Non Coding 25242 87 83 92 UTR 103 77 1 19 Phase 0 24 368 0 0 Coding 130 8 1344 21 Phase 1 24 0 372 0 Intron 1750 0 18 2570 Phase 2 23 0 0 363 Precision Recall F1 Precision Recall F1 Intergenic 0.91228 0.99932 0.95382 Non Coding 0.99720 0.98973 0.99345 UTR 0.89535 0.38500 0.53846 Phase 0 0.80879 0.93878 0.86895 Coding 0.98462 0.89421 0.93724 Phase 1 0.81758 0.93939 0.87427 Intron 0.98054 0.59244 0.73861 Phase 2 0.79780 0.94041 0.86326 Subgenic 0.98194 0.67009 0.79658 Coding 0.80806 0.93952 0.86885 Genic 0.98011 0.66065 0.78928 BP_Extractor for Sequence contig_2516 - ID 48 Forward for Sequence contig_2516 - ID 48 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7073 0 0 0 Non Coding 7073 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_2516 - ID 48 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 360 0 0 1081 Non Coding 6416 45 58 46 UTR 0 9 0 8 Phase 0 2 171 0 0 Coding 10 1 645 23 Phase 1 4 0 158 0 Intron 70 2 3 4861 Phase 2 3 0 0 170 Precision Recall F1 Precision Recall F1 Intergenic 0.81818 0.24983 0.38278 Non Coding 0.99860 0.97730 0.98784 UTR 0.75000 0.52941 0.62069 Phase 0 0.79167 0.98844 0.87918 Coding 0.99537 0.94993 0.97212 Phase 1 0.73148 0.97531 0.83598 Intron 0.81383 0.98481 0.89119 Phase 2 0.78704 0.98266 0.87404 Subgenic 0.83160 0.98059 0.89997 Coding 0.77006 0.98228 0.86332 Genic 0.83145 0.97923 0.89931 BP_Extractor for Sequence contig_2518 - ID 49 Forward for Sequence contig_2518 - ID 49 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6450 3 0 30 Non Coding 6852 36 35 37 UTR 40 75 17 19 Phase 0 13 605 1 0 Coding 25 8 1899 23 Phase 1 13 0 606 1 Intron 21 1 10 196 Phase 2 13 1 0 604 Precision Recall F1 Precision Recall F1 Intergenic 0.98684 0.99491 0.99086 Non Coding 0.99434 0.98448 0.98939 UTR 0.86207 0.49669 0.63025 Phase 0 0.94237 0.97738 0.95956 Coding 0.98598 0.97136 0.97861 Phase 1 0.94393 0.97742 0.96038 Intron 0.73134 0.85965 0.79032 Phase 2 0.94081 0.97735 0.95873 Subgenic 0.95488 0.95969 0.95728 Coding 0.94237 0.97738 0.95956 Genic 0.95134 0.92973 0.94041 Reverse for Sequence contig_2518 - ID 49 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7107 7 0 0 Non Coding 7595 8 7 7 UTR 6 96 9 0 Phase 0 0 399 0 0 Coding 0 0 1212 0 Phase 1 1 0 400 0 Intron 0 0 0 380 Phase 2 0 0 0 400 Precision Recall F1 Precision Recall F1 Intergenic 0.99916 0.99902 0.99909 Non Coding 0.99987 0.99711 0.99849 UTR 0.93204 0.86486 0.89720 Phase 0 0.98034 1.00000 0.99007 Coding 0.99263 1.00000 0.99630 Phase 1 0.98280 0.99751 0.99010 Intron 1.00000 1.00000 1.00000 Phase 2 0.98280 1.00000 0.99133 Subgenic 0.99438 1.00000 0.99718 Coding 0.98198 0.99917 0.99050 Genic 0.99061 0.99119 0.99090 BP_Extractor for Sequence contig_2547 - ID 50 Forward for Sequence contig_2547 - ID 50 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5940 0 0 0 Non Coding 5886 0 0 0 UTR 25 0 0 0 Phase 0 50 0 0 0 Coding 53 0 0 0 Phase 1 46 0 0 0 Intron 0 0 0 0 Phase 2 36 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98704 1.00000 0.99348 Non Coding 0.97807 1.00000 0.98891 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_2547 - ID 50 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6018 0 0 0 Non Coding 6018 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_2553 - ID 51 Forward for Sequence contig_2553 - ID 51 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 39318 38 1733 315 Non Coding 44484 1413 1358 1459 UTR 187 798 40 21 Phase 0 246 4463 3 0 Coding 1061 22 15822 157 Phase 1 235 0 4518 2 Intron 308 4 42 2970 Phase 2 234 3 0 4418 Precision Recall F1 Precision Recall F1 Intergenic 0.96193 0.94962 0.95574 Non Coding 0.98418 0.91317 0.94734 UTR 0.92575 0.76291 0.83648 Phase 0 0.75914 0.94716 0.84279 Coding 0.89709 0.92732 0.91196 Phase 1 0.76850 0.95016 0.84973 Intron 0.85764 0.89350 0.87520 Phase 2 0.75149 0.94909 0.83881 Subgenic 0.89062 0.92181 0.90594 Coding 0.75971 0.94880 0.84379 Genic 0.89200 0.91405 0.90289 Reverse for Sequence contig_2553 - ID 51 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 59516 2 0 0 Non Coding 61924 2 4 5 UTR 92 152 0 0 Phase 0 101 208 0 0 Coding 1220 0 630 0 Phase 1 91 0 206 0 Intron 1167 0 0 57 Phase 2 90 0 0 205 Precision Recall F1 Precision Recall F1 Intergenic 0.96001 0.99997 0.97958 Non Coding 0.99547 0.99982 0.99764 UTR 0.98701 0.62295 0.76382 Phase 0 0.99048 0.67314 0.80154 Coding 1.00000 0.34054 0.50806 Phase 1 0.98095 0.69360 0.81262 Intron 1.00000 0.04657 0.08899 Phase 2 0.97619 0.69492 0.81188 Subgenic 1.00000 0.22349 0.36533 Coding 0.98254 0.68701 0.80862 Genic 0.99762 0.25286 0.40346 BP_Extractor for Sequence contig_2587 - ID 52 Forward for Sequence contig_2587 - ID 52 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20392 0 0 0 Non Coding 21111 0 0 0 UTR 14 662 0 0 Phase 0 22 659 0 0 Coding 45 0 1977 9 Phase 1 15 0 659 0 Intron 4 0 0 42 Phase 2 20 0 0 659 Precision Recall F1 Precision Recall F1 Intergenic 0.99692 1.00000 0.99846 Non Coding 0.99731 1.00000 0.99865 UTR 1.00000 0.97929 0.98954 Phase 0 1.00000 0.96769 0.98358 Coding 1.00000 0.97341 0.98653 Phase 1 1.00000 0.97774 0.98875 Intron 0.82353 0.91304 0.86598 Phase 2 1.00000 0.97054 0.98505 Subgenic 0.99556 0.97208 0.98368 Coding 1.00000 0.97198 0.98579 Genic 0.99665 0.97385 0.98512 Reverse for Sequence contig_2587 - ID 52 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19025 0 0 0 Non Coding 21643 0 0 0 UTR 119 0 0 0 Phase 0 498 0 0 0 Coding 2373 0 0 0 Phase 1 498 0 0 0 Intron 1628 0 0 0 Phase 2 506 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.82199 1.00000 0.90230 Non Coding 0.93510 1.00000 0.96646 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_2662 - ID 53 Forward for Sequence contig_2662 - ID 53 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20803 11 0 0 Non Coding 27232 15 12 14 UTR 84 1188 0 0 Phase 0 116 753 0 0 Coding 636 0 2267 21 Phase 1 128 0 756 0 Intron 12 0 37 4846 Phase 2 125 0 0 754 Precision Recall F1 Precision Recall F1 Intergenic 0.96601 0.99947 0.98246 Non Coding 0.98663 0.99850 0.99253 UTR 0.99083 0.93396 0.96155 Phase 0 0.98047 0.86651 0.91998 Coding 0.98394 0.77531 0.86725 Phase 1 0.98438 0.85520 0.91525 Intron 0.99569 0.98999 0.99283 Phase 2 0.98177 0.85779 0.91560 Subgenic 0.99191 0.90971 0.94903 Coding 0.98220 0.85980 0.91694 Genic 0.99176 0.91310 0.95080 Reverse for Sequence contig_2662 - ID 53 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 29613 0 0 0 Non Coding 29718 0 0 0 UTR 125 0 0 0 Phase 0 66 0 0 0 Coding 165 0 0 0 Phase 1 59 0 0 0 Intron 2 0 0 0 Phase 2 62 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99024 1.00000 0.99509 Non Coding 0.99375 1.00000 0.99686 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_2663 - ID 54 Forward for Sequence contig_2663 - ID 54 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3156 0 0 0 Non Coding 3156 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_2663 - ID 54 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3156 0 0 0 Non Coding 3156 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_2664 - ID 55 Forward for Sequence contig_2664 - ID 55 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3986 0 0 0 Non Coding 3986 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_2664 - ID 55 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 119 4 0 0 Non Coding 3056 10 13 15 UTR 5 105 0 3 Phase 0 7 293 0 0 Coding 0 0 903 21 Phase 1 8 0 290 0 Intron 10 1 6 2809 Phase 2 6 0 0 288 Precision Recall F1 Precision Recall F1 Intergenic 0.88806 0.96748 0.92607 Non Coding 0.99318 0.98772 0.99044 UTR 0.95455 0.92920 0.94170 Phase 0 0.96700 0.97667 0.97181 Coding 0.99340 0.97727 0.98527 Phase 1 0.95710 0.97315 0.96506 Intron 0.99153 0.99398 0.99275 Phase 2 0.95050 0.97959 0.96482 Subgenic 0.99198 0.98987 0.99092 Coding 0.95820 0.97646 0.96724 Genic 0.99091 0.98809 0.98950 BP_Extractor for Sequence contig_2665 - ID 56 Forward for Sequence contig_2665 - ID 56 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20851 13 0 0 Non Coding 22142 74 72 81 UTR 14 670 5 0 Phase 0 2 853 0 0 Coding 1 3 2742 100 Phase 1 5 0 855 0 Intron 3 3 34 493 Phase 2 2 0 0 846 Precision Recall F1 Precision Recall F1 Intergenic 0.99914 0.99938 0.99926 Non Coding 0.99959 0.98985 0.99470 UTR 0.97242 0.97242 0.97242 Phase 0 0.92017 0.99766 0.95735 Coding 0.98598 0.96346 0.97459 Phase 1 0.92233 0.99419 0.95691 Intron 0.83137 0.92495 0.87567 Phase 2 0.91262 0.99764 0.95324 Subgenic 0.95880 0.95738 0.95809 Coding 0.91837 0.99649 0.95584 Genic 0.96111 0.95993 0.96052 Reverse for Sequence contig_2665 - ID 56 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15978 33 52 126 Non Coding 21052 87 98 93 UTR 58 549 11 10 Phase 0 56 1153 0 0 Coding 194 13 3626 63 Phase 1 52 0 1142 0 Intron 685 18 31 3485 Phase 2 52 0 0 1147 Precision Recall F1 Precision Recall F1 Intergenic 0.94461 0.98697 0.96532 Non Coding 0.99246 0.98697 0.98970 UTR 0.89560 0.87420 0.88477 Phase 0 0.92984 0.95368 0.94161 Coding 0.97473 0.93070 0.95221 Phase 1 0.92097 0.95645 0.93837 Intron 0.94598 0.82603 0.88194 Phase 2 0.92500 0.95663 0.94055 Subgenic 0.96043 0.87628 0.91643 Coding 0.92527 0.95558 0.94018 Genic 0.95547 0.87613 0.91408 BP_Extractor for Sequence contig_2666 - ID 57 Forward for Sequence contig_2666 - ID 57 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 41983 2 0 5 Non Coding 42864 1 1 1 UTR 12 242 3 1 Phase 0 6 192 0 0 Coding 11 0 576 0 Phase 1 3 0 192 0 Intron 2 1 0 618 Phase 2 4 0 0 192 Precision Recall F1 Precision Recall F1 Intergenic 0.99940 0.99983 0.99962 Non Coding 0.99970 0.99993 0.99981 UTR 0.98776 0.93798 0.96223 Phase 0 0.99482 0.96970 0.98210 Coding 0.99482 0.98126 0.98799 Phase 1 0.99482 0.98462 0.98969 Intron 0.99038 0.99517 0.99277 Phase 2 0.99482 0.97959 0.98715 Subgenic 0.99252 0.98841 0.99046 Coding 0.99482 0.97793 0.98630 Genic 0.99171 0.97954 0.98559 Reverse for Sequence contig_2666 - ID 57 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27252 5 111 339 Non Coding 37282 621 594 588 UTR 27 658 15 21 Phase 0 107 1325 0 2 Coding 417 3 5574 140 Phase 1 113 2 1353 0 Intron 741 44 144 7965 Phase 2 110 0 1 1358 Precision Recall F1 Precision Recall F1 Intergenic 0.95833 0.98358 0.97079 Non Coding 0.99123 0.95387 0.97219 UTR 0.92676 0.91262 0.91964 Phase 0 0.68018 0.92399 0.78356 Coding 0.95380 0.90871 0.93071 Phase 1 0.69456 0.92166 0.79215 Intron 0.94093 0.89555 0.91768 Phase 2 0.69713 0.92444 0.79485 Subgenic 0.94619 0.90092 0.92300 Coding 0.69062 0.92336 0.79021 Genic 0.94527 0.90145 0.92284 BP_Extractor for Sequence contig_2690 - ID 58 Forward for Sequence contig_2690 - ID 58 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14720 1 71 67 Non Coding 16126 124 121 119 UTR 44 72 0 2 Phase 0 30 525 1 0 Coding 162 5 1862 12 Phase 1 30 0 527 0 Intron 26 0 14 1101 Phase 2 26 0 0 530 Precision Recall F1 Precision Recall F1 Intergenic 0.98448 0.99065 0.98755 Non Coding 0.99470 0.97793 0.98624 UTR 0.92308 0.61017 0.73469 Phase 0 0.80894 0.94424 0.87137 Coding 0.95634 0.91230 0.93380 Phase 1 0.81202 0.94614 0.87396 Intron 0.93147 0.96494 0.94791 Phase 2 0.81664 0.95324 0.87967 Subgenic 0.94695 0.93118 0.93900 Coding 0.81253 0.94787 0.87500 Genic 0.94637 0.91970 0.93284 Reverse for Sequence contig_2690 - ID 58 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14597 0 0 0 Non Coding 15460 0 0 0 UTR 120 0 0 0 Phase 0 890 0 0 0 Coding 3077 0 0 0 Phase 1 902 0 0 0 Intron 365 0 0 0 Phase 2 907 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.80384 1.00000 0.89126 Non Coding 0.85137 1.00000 0.91972 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_2698 - ID 59 Forward for Sequence contig_2698 - ID 59 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20466 0 0 0 Non Coding 20466 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_2698 - ID 59 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20190 0 0 0 Non Coding 20387 0 0 0 UTR 34 0 0 0 Phase 0 29 0 0 0 Coding 161 0 0 0 Phase 1 23 0 0 0 Intron 81 0 0 0 Phase 2 27 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98651 1.00000 0.99321 Non Coding 0.99614 1.00000 0.99807 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_2711 - ID 60 Forward for Sequence contig_2711 - ID 60 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7001 9 119 29 Non Coding 13616 134 137 131 UTR 29 675 21 23 Phase 0 24 1593 0 0 Coding 11 3 4995 84 Phase 1 32 0 1590 0 Intron 15 9 46 5813 Phase 2 29 0 0 1596 Precision Recall F1 Precision Recall F1 Intergenic 0.99221 0.97807 0.98509 Non Coding 0.99380 0.97132 0.98243 UTR 0.96983 0.90241 0.93490 Phase 0 0.92241 0.98516 0.95275 Coding 0.96410 0.98076 0.97236 Phase 1 0.92067 0.98027 0.94954 Intron 0.97714 0.98810 0.98259 Phase 2 0.92415 0.98215 0.95227 Subgenic 0.97107 0.98469 0.97783 Coding 0.92241 0.98252 0.95152 Genic 0.97100 0.97944 0.97520 Reverse for Sequence contig_2711 - ID 60 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17254 27 0 60 Non Coding 18448 6 5 4 UTR 6 283 0 5 Phase 0 1 138 0 0 Coding 1 1 428 2 Phase 1 1 0 139 0 Intron 5 0 4 806 Phase 2 0 0 0 140 Precision Recall F1 Precision Recall F1 Intergenic 0.99930 0.99498 0.99714 Non Coding 0.99989 0.99919 0.99954 UTR 0.90997 0.96259 0.93554 Phase 0 0.95833 0.99281 0.97527 Coding 0.99074 0.99074 0.99074 Phase 1 0.96528 0.99286 0.97887 Intron 0.92325 0.98896 0.95498 Phase 2 0.97222 1.00000 0.98592 Subgenic 0.94559 0.98957 0.96708 Coding 0.96528 0.99523 0.98002 Genic 0.93874 0.98443 0.96104 BP_Extractor for Sequence contig_2712 - ID 61 Forward for Sequence contig_2712 - ID 61 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4775 1 9 5 Non Coding 5768 17 11 14 UTR 16 37 7 2 Phase 0 7 201 0 0 Coding 10 5 638 3 Phase 1 3 0 207 0 Intron 57 19 0 851 Phase 2 3 0 0 204 Precision Recall F1 Precision Recall F1 Intergenic 0.98291 0.99687 0.98984 Non Coding 0.99775 0.99277 0.99525 UTR 0.59677 0.59677 0.59677 Phase 0 0.92202 0.96635 0.94366 Coding 0.97554 0.97256 0.97405 Phase 1 0.94954 0.98571 0.96729 Intron 0.98839 0.91802 0.95190 Phase 2 0.93578 0.98551 0.96000 Subgenic 0.98284 0.94062 0.96127 Coding 0.93578 0.97920 0.95700 Genic 0.96766 0.92766 0.94724 Reverse for Sequence contig_2712 - ID 61 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6435 0 0 0 Non Coding 6435 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_2713 - ID 62 Forward for Sequence contig_2713 - ID 62 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3301 0 0 0 Non Coding 3301 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_2713 - ID 62 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3225 0 0 0 Non Coding 3268 0 0 0 UTR 7 0 0 0 Phase 0 11 0 0 0 Coding 64 0 0 0 Phase 1 12 0 0 0 Intron 5 0 0 0 Phase 2 10 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97698 1.00000 0.98835 Non Coding 0.99000 1.00000 0.99498 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_2746 - ID 63 Forward for Sequence contig_2746 - ID 63 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5504 0 0 0 Non Coding 5504 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_2746 - ID 63 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5504 0 0 0 Non Coding 5504 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_2762 - ID 64 Forward for Sequence contig_2762 - ID 64 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 46871 7 7 147 Non Coding 49069 25 26 24 UTR 94 544 3 6 Phase 0 312 604 0 0 Coding 1022 9 1876 12 Phase 1 309 0 603 0 Intron 28 0 1 1269 Phase 2 319 0 0 605 Precision Recall F1 Precision Recall F1 Intergenic 0.97617 0.99658 0.98627 Non Coding 0.98120 0.99847 0.98976 UTR 0.97143 0.84080 0.90141 Phase 0 0.96025 0.65939 0.78188 Coding 0.99417 0.64269 0.78069 Phase 1 0.95866 0.66118 0.78261 Intron 0.88494 0.97766 0.92899 Phase 2 0.96184 0.65476 0.77914 Subgenic 0.94700 0.74579 0.83444 Coding 0.96025 0.65843 0.78120 Genic 0.95053 0.75843 0.84368 Reverse for Sequence contig_2762 - ID 64 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31345 29 36 282 Non Coding 42986 303 325 317 UTR 102 1136 21 63 Phase 0 47 2619 0 0 Coding 88 42 8547 67 Phase 1 49 0 2597 0 Intron 1809 14 162 8153 Phase 2 48 0 0 2605 Precision Recall F1 Precision Recall F1 Intergenic 0.94005 0.98905 0.96393 Non Coding 0.99666 0.97849 0.98749 UTR 0.93038 0.85930 0.89343 Phase 0 0.89630 0.98237 0.93737 Coding 0.97502 0.97747 0.97624 Phase 1 0.88877 0.98148 0.93283 Intron 0.95190 0.80420 0.87184 Phase 2 0.89151 0.98191 0.93453 Subgenic 0.96359 0.88444 0.92232 Coding 0.89220 0.98192 0.93491 Genic 0.96141 0.88280 0.92043 BP_Extractor for Sequence contig_2844 - ID 65 Forward for Sequence contig_2844 - ID 65 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26160 26 282 160 Non Coding 27843 551 579 560 UTR 103 630 32 11 Phase 0 173 1468 12 1 Coding 509 33 5749 169 Phase 1 171 1 1438 12 Intron 77 26 27 454 Phase 2 171 10 1 1457 Precision Recall F1 Precision Recall F1 Intergenic 0.97434 0.98242 0.97836 Non Coding 0.98184 0.94278 0.96191 UTR 0.88112 0.81186 0.84507 Phase 0 0.72315 0.88755 0.79696 Coding 0.94401 0.88994 0.91618 Phase 1 0.70837 0.88656 0.78751 Intron 0.57179 0.77740 0.65893 Phase 2 0.71773 0.88896 0.79422 Subgenic 0.90107 0.88061 0.89072 Coding 0.71642 0.88769 0.79291 Genic 0.89920 0.87379 0.88631 Reverse for Sequence contig_2844 - ID 65 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 29708 2 83 0 Non Coding 31988 213 200 222 UTR 265 57 0 3 Phase 0 449 167 0 0 Coding 1649 12 1040 28 Phase 1 440 0 180 0 Intron 700 5 17 879 Phase 2 431 0 0 158 Precision Recall F1 Precision Recall F1 Intergenic 0.91913 0.99715 0.95655 Non Coding 0.96037 0.98054 0.97035 UTR 0.75000 0.17538 0.28429 Phase 0 0.43947 0.27110 0.33534 Coding 0.91228 0.38109 0.53761 Phase 1 0.47368 0.29032 0.36000 Intron 0.96593 0.54903 0.70012 Phase 2 0.41579 0.26825 0.32611 Subgenic 0.93610 0.44319 0.60157 Coding 0.44298 0.27671 0.34064 Genic 0.92944 0.42449 0.58280 BP_Extractor for Sequence contig_3012 - ID 66 Forward for Sequence contig_3012 - ID 66 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3492 0 0 0 Non Coding 3492 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_3012 - ID 66 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3085 0 0 0 Non Coding 3327 0 0 0 UTR 15 0 0 0 Phase 0 52 0 0 0 Coding 387 0 0 0 Phase 1 63 0 0 0 Intron 5 0 0 0 Phase 2 50 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88345 1.00000 0.93812 Non Coding 0.95275 1.00000 0.97580 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_3045 - ID 67 Forward for Sequence contig_3045 - ID 67 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13783 2 78 258 Non Coding 19615 620 620 615 UTR 59 110 13 6 Phase 0 94 553 0 0 Coding 248 1 3361 112 Phase 1 84 0 553 0 Intron 280 19 67 4991 Phase 2 76 0 0 558 Precision Recall F1 Precision Recall F1 Intergenic 0.95915 0.97606 0.96753 Non Coding 0.98722 0.91360 0.94898 UTR 0.83333 0.58511 0.68750 Phase 0 0.47144 0.85471 0.60769 Coding 0.95510 0.90301 0.92832 Phase 1 0.47144 0.86813 0.61105 Intron 0.92994 0.93168 0.93081 Phase 2 0.47570 0.88013 0.61760 Subgenic 0.93991 0.91993 0.92981 Coding 0.47286 0.86757 0.61210 Genic 0.93835 0.91313 0.92557 Reverse for Sequence contig_3045 - ID 67 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20306 101 45 0 Non Coding 21829 92 90 95 UTR 73 52 0 7 Phase 0 182 245 0 0 Coding 572 15 961 32 Phase 1 186 0 247 0 Intron 31 4 5 1184 Phase 2 180 0 0 242 Precision Recall F1 Precision Recall F1 Intergenic 0.96778 0.99286 0.98016 Non Coding 0.97551 0.98747 0.98145 UTR 0.30233 0.39394 0.34211 Phase 0 0.72700 0.57377 0.64136 Coding 0.95054 0.60823 0.74180 Phase 1 0.73294 0.57044 0.64156 Intron 0.96811 0.96732 0.96772 Phase 2 0.71810 0.57346 0.63768 Subgenic 0.96016 0.76498 0.85153 Coding 0.72601 0.57254 0.64021 Genic 0.91313 0.74830 0.82254 BP_Extractor for Sequence contig_3088 - ID 68 Forward for Sequence contig_3088 - ID 68 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20857 1 4 9 Non Coding 21390 80 78 92 UTR 30 12 3 2 Phase 0 11 274 0 0 Coding 49 3 1015 24 Phase 1 11 0 276 0 Intron 9 0 40 432 Phase 2 16 0 0 262 Precision Recall F1 Precision Recall F1 Intergenic 0.99580 0.99933 0.99756 Non Coding 0.99823 0.98845 0.99331 UTR 0.75000 0.25532 0.38095 Phase 0 0.77401 0.96140 0.85759 Coding 0.95574 0.93034 0.94287 Phase 1 0.77966 0.96167 0.86115 Intron 0.92505 0.89813 0.91139 Phase 2 0.74011 0.94245 0.82911 Subgenic 0.94637 0.92048 0.93325 Coding 0.76460 0.95529 0.84937 Genic 0.94434 0.90117 0.92225 Reverse for Sequence contig_3088 - ID 68 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20032 3 203 234 Non Coding 21118 182 174 186 UTR 209 19 2 3 Phase 0 40 235 0 0 Coding 128 0 1036 21 Phase 1 41 0 243 0 Intron 382 1 10 207 Phase 2 40 0 0 231 Precision Recall F1 Precision Recall F1 Intergenic 0.96535 0.97851 0.97188 Non Coding 0.99430 0.97498 0.98455 UTR 0.82609 0.08155 0.14844 Phase 0 0.56355 0.85455 0.67919 Coding 0.82814 0.87426 0.85057 Phase 1 0.58273 0.85563 0.69330 Intron 0.44516 0.34500 0.38873 Phase 2 0.55396 0.85240 0.67151 Subgenic 0.72436 0.69636 0.71008 Coding 0.56675 0.85422 0.68140 Genic 0.72570 0.62537 0.67181 BP_Extractor for Sequence contig_3110 - ID 69 Forward for Sequence contig_3110 - ID 69 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19185 0 0 0 Non Coding 20281 0 0 0 UTR 81 0 0 0 Phase 0 430 0 0 0 Coding 1381 0 0 0 Phase 1 432 0 0 0 Intron 930 0 0 0 Phase 2 434 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88914 1.00000 0.94132 Non Coding 0.93994 1.00000 0.96904 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_3110 - ID 69 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12207 0 0 0 Non Coding 19765 0 0 0 UTR 182 0 0 0 Phase 0 625 0 0 0 Coding 2406 0 0 0 Phase 1 584 0 0 0 Intron 6782 0 0 0 Phase 2 603 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.56574 1.00000 0.72265 Non Coding 0.91602 1.00000 0.95617 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_3218 - ID 70 Forward for Sequence contig_3218 - ID 70 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7528 0 0 0 Non Coding 7528 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_3218 - ID 70 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7528 0 0 0 Non Coding 7528 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_3267 - ID 71 Forward for Sequence contig_3267 - ID 71 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5707 1 0 38 Non Coding 8795 22 23 23 UTR 1 136 14 0 Phase 0 0 121 0 0 Coding 0 0 386 0 Phase 1 0 0 120 0 Intron 13 10 29 2889 Phase 2 0 0 0 120 Precision Recall F1 Precision Recall F1 Intergenic 0.99755 0.99321 0.99538 Non Coding 1.00000 0.99233 0.99615 UTR 0.92517 0.90066 0.91275 Phase 0 0.84615 1.00000 0.91667 Coding 0.89977 1.00000 0.94724 Phase 1 0.83916 1.00000 0.91255 Intron 0.98702 0.98232 0.98466 Phase 2 0.83916 1.00000 0.91255 Subgenic 0.97586 0.98437 0.98010 Coding 0.84149 1.00000 0.91392 Genic 0.97374 0.98074 0.97722 Reverse for Sequence contig_3267 - ID 71 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9224 0 0 0 Non Coding 9224 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_3270 - ID 72 Forward for Sequence contig_3270 - ID 72 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2688 0 0 0 Non Coding 2688 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 3 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99889 1.00000 0.99944 Non Coding 0.99889 1.00000 0.99944 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_3270 - ID 72 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2691 0 0 0 Non Coding 2691 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_3271 - ID 73 Forward for Sequence contig_3271 - ID 73 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9091 17 30 53 Non Coding 13639 155 173 183 UTR 21 948 37 23 Phase 0 21 1831 0 0 Coding 10 43 5786 172 Phase 1 28 0 1813 0 Intron 57 45 105 3230 Phase 2 22 0 0 1803 Precision Recall F1 Precision Recall F1 Intergenic 0.99041 0.98912 0.98977 Non Coding 0.99482 0.96389 0.97911 UTR 0.90028 0.92128 0.91066 Phase 0 0.92195 0.98866 0.95414 Coding 0.97113 0.96257 0.96683 Phase 1 0.91289 0.98479 0.94748 Intron 0.92869 0.93977 0.93420 Phase 2 0.90785 0.98795 0.94621 Subgenic 0.95549 0.95428 0.95488 Coding 0.91423 0.98713 0.94929 Genic 0.94995 0.95104 0.95049 Reverse for Sequence contig_3271 - ID 73 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17354 7 67 253 Non Coding 18265 120 125 124 UTR 10 147 7 0 Phase 0 13 334 0 0 Coding 22 6 1279 41 Phase 1 15 0 329 0 Intron 10 0 9 456 Phase 2 13 0 0 330 Precision Recall F1 Precision Recall F1 Intergenic 0.99759 0.98151 0.98948 Non Coding 0.99776 0.98020 0.98890 UTR 0.91875 0.89634 0.90741 Phase 0 0.73568 0.96254 0.83396 Coding 0.93906 0.94881 0.94391 Phase 1 0.72467 0.95640 0.82456 Intron 0.60800 0.96000 0.74449 Phase 2 0.72687 0.96210 0.82811 Subgenic 0.82150 0.95173 0.88183 Coding 0.72907 0.96035 0.82888 Genic 0.82835 0.94716 0.88378 BP_Extractor for Sequence contig_3273 - ID 74 Forward for Sequence contig_3273 - ID 74 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10516 14 0 53 Non Coding 12799 6 5 7 UTR 24 535 4 20 Phase 0 13 1019 0 0 Coding 18 8 3064 13 Phase 1 10 0 1020 0 Intron 0 8 7 1626 Phase 2 13 0 0 1018 Precision Recall F1 Precision Recall F1 Intergenic 0.99602 0.99367 0.99484 Non Coding 0.99720 0.99860 0.99789 UTR 0.94690 0.91767 0.93206 Phase 0 0.99415 0.98740 0.99076 Coding 0.99642 0.98743 0.99191 Phase 1 0.99512 0.99029 0.99270 Intron 0.94977 0.99086 0.96988 Phase 2 0.99317 0.98739 0.99027 Subgenic 0.97974 0.98862 0.98416 Coding 0.99415 0.98836 0.99125 Genic 0.97627 0.98085 0.97856 Reverse for Sequence contig_3273 - ID 74 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15889 0 0 0 Non Coding 15893 0 0 0 UTR 11 0 0 0 Phase 0 6 0 0 0 Coding 10 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99868 1.00000 0.99934 Non Coding 0.99893 1.00000 0.99947 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_3360 - ID 75 Forward for Sequence contig_3360 - ID 75 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 37417 5 79 58 Non Coding 42562 176 178 203 UTR 70 959 13 10 Phase 0 138 1459 0 0 Coding 454 30 4805 80 Phase 1 132 0 1457 0 Intron 385 2 8 3489 Phase 2 127 0 0 1432 Precision Recall F1 Precision Recall F1 Intergenic 0.97628 0.99622 0.98615 Non Coding 0.99076 0.98708 0.98892 UTR 0.96285 0.91160 0.93652 Phase 0 0.89235 0.91359 0.90285 Coding 0.97961 0.89495 0.93537 Phase 1 0.89113 0.91693 0.90385 Intron 0.95931 0.89830 0.92780 Phase 2 0.87584 0.91854 0.89668 Subgenic 0.97097 0.89636 0.93217 Coding 0.88644 0.91633 0.90114 Genic 0.97012 0.89791 0.93262 Reverse for Sequence contig_3360 - ID 75 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31288 16 0 41 Non Coding 38530 466 446 456 UTR 60 1811 21 18 Phase 0 32 2614 0 0 Coding 274 31 9105 51 Phase 1 32 0 2634 0 Intron 67 44 114 4923 Phase 2 30 0 0 2624 Precision Recall F1 Precision Recall F1 Intergenic 0.98735 0.99818 0.99273 Non Coding 0.99757 0.96571 0.98138 UTR 0.95216 0.94817 0.95016 Phase 0 0.84870 0.98791 0.91303 Coding 0.98539 0.96237 0.97374 Phase 1 0.85519 0.98800 0.91681 Intron 0.97814 0.95629 0.96710 Phase 2 0.85195 0.98870 0.91524 Subgenic 0.98283 0.96023 0.97140 Coding 0.85195 0.98820 0.91503 Genic 0.97923 0.95884 0.96892 BP_Extractor for Sequence contig_3361 - ID 76 Forward for Sequence contig_3361 - ID 76 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6744 4 0 70 Non Coding 8636 6 3 6 UTR 1 222 2 1 Phase 0 11 432 0 0 Coding 11 32 1304 4 Phase 1 14 0 435 0 Intron 17 0 8 1569 Phase 2 14 0 0 432 Precision Recall F1 Precision Recall F1 Intergenic 0.99572 0.98915 0.99242 Non Coding 0.99550 0.99827 0.99688 UTR 0.86047 0.98230 0.91736 Phase 0 0.98630 0.97517 0.98070 Coding 0.99239 0.96521 0.97861 Phase 1 0.99315 0.96882 0.98083 Intron 0.95438 0.98432 0.96912 Phase 2 0.98630 0.96861 0.97738 Subgenic 0.97126 0.97555 0.97340 Coding 0.98858 0.97085 0.97964 Genic 0.96238 0.97603 0.96916 Reverse for Sequence contig_3361 - ID 76 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9244 2 60 7 Non Coding 9436 35 36 34 UTR 4 124 0 0 Phase 0 2 147 0 0 Coding 5 1 480 20 Phase 1 2 0 146 0 Intron 5 0 6 31 Phase 2 3 0 0 148 Precision Recall F1 Precision Recall F1 Intergenic 0.99849 0.99259 0.99553 Non Coding 0.99926 0.98899 0.99410 UTR 0.97638 0.96875 0.97255 Phase 0 0.80769 0.98658 0.88822 Coding 0.87912 0.94862 0.91255 Phase 1 0.80220 0.98649 0.88485 Intron 0.53448 0.73810 0.62000 Phase 2 0.81319 0.98013 0.88889 Subgenic 0.84603 0.93248 0.88715 Coding 0.80769 0.98438 0.88732 Genic 0.86867 0.93935 0.90263 BP_Extractor for Sequence contig_3400 - ID 77 Forward for Sequence contig_3400 - ID 77 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 71967 18 249 60 Non Coding 75394 216 282 249 UTR 319 363 8 2 Phase 0 1458 2528 0 5 Coding 5342 6 7973 49 Phase 1 1385 5 2461 0 Intron 589 1 17 1003 Phase 2 1482 0 6 2495 Precision Recall F1 Precision Recall F1 Intergenic 0.92009 0.99548 0.95630 Non Coding 0.94575 0.99019 0.96746 UTR 0.93557 0.52457 0.67222 Phase 0 0.91961 0.63343 0.75015 Coding 0.96678 0.59634 0.73766 Phase 1 0.89523 0.63905 0.74576 Intron 0.90036 0.62298 0.73642 Phase 2 0.90760 0.62641 0.74124 Subgenic 0.95887 0.59920 0.73752 Coding 0.90748 0.63290 0.74572 Genic 0.95794 0.59590 0.73475 Reverse for Sequence contig_3400 - ID 77 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 75916 23 766 15 Non Coding 78271 701 722 715 UTR 262 680 16 8 Phase 0 342 2184 3 0 Coding 1017 39 7858 65 Phase 1 342 0 2162 2 Intron 417 6 24 854 Phase 2 347 3 1 2171 Precision Recall F1 Precision Recall F1 Intergenic 0.97815 0.98952 0.98380 Non Coding 0.98700 0.97341 0.98016 UTR 0.90909 0.70393 0.79347 Phase 0 0.75623 0.86358 0.80635 Coding 0.90697 0.87515 0.89078 Phase 1 0.74861 0.86273 0.80163 Intron 0.90658 0.65642 0.76148 Phase 2 0.75173 0.86082 0.80259 Subgenic 0.90693 0.84747 0.87619 Coding 0.75219 0.86238 0.80353 Genic 0.90709 0.83514 0.86963 BP_Extractor for Sequence contig_3439 - ID 78 Forward for Sequence contig_3439 - ID 78 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 80589 32 42 88 Non Coding 84198 359 345 347 UTR 136 1298 34 20 Phase 0 234 3141 1 0 Coding 957 23 10382 116 Phase 1 226 0 3154 0 Intron 157 10 43 1478 Phase 2 246 1 0 3153 Precision Recall F1 Precision Recall F1 Intergenic 0.98473 0.99799 0.99132 Non Coding 0.99168 0.98767 0.98967 UTR 0.95231 0.87231 0.91056 Phase 0 0.89717 0.93039 0.91348 Coding 0.98867 0.90451 0.94472 Phase 1 0.90114 0.93314 0.91686 Intron 0.86839 0.87559 0.87198 Phase 2 0.90086 0.92735 0.91391 Subgenic 0.97189 0.90081 0.93500 Coding 0.89972 0.93029 0.91475 Genic 0.96992 0.89791 0.93253 Reverse for Sequence contig_3439 - ID 78 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 72291 11 47 75 Non Coding 84208 538 552 541 UTR 274 879 35 26 Phase 0 380 2773 2 8 Coding 1629 9 9833 74 Phase 1 406 9 2763 2 Intron 507 33 54 9628 Phase 2 442 3 6 2772 Precision Recall F1 Precision Recall F1 Intergenic 0.96774 0.99816 0.98272 Non Coding 0.98563 0.98100 0.98331 UTR 0.94313 0.72405 0.81920 Phase 0 0.83449 0.87670 0.85507 Coding 0.98636 0.85171 0.91410 Phase 1 0.83148 0.86887 0.84976 Intron 0.98215 0.94189 0.96160 Phase 2 0.83419 0.86007 0.84693 Subgenic 0.98427 0.89406 0.93700 Coding 0.83338 0.86849 0.85058 Genic 0.98242 0.88508 0.93121 BP_Extractor for Sequence contig_3476 - ID 79 Forward for Sequence contig_3476 - ID 79 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16666 3 49 33 Non Coding 26015 150 156 159 UTR 240 277 26 21 Phase 0 514 892 0 0 Coding 2053 9 2980 92 Phase 1 479 0 886 0 Intron 478 5 71 7615 Phase 2 484 0 0 883 Precision Recall F1 Precision Recall F1 Intergenic 0.85744 0.99493 0.92108 Non Coding 0.94628 0.98244 0.96402 UTR 0.94218 0.49113 0.64569 Phase 0 0.85605 0.63442 0.72876 Coding 0.95329 0.58044 0.72155 Phase 1 0.85029 0.64908 0.73619 Intron 0.98119 0.93218 0.95606 Phase 2 0.84741 0.64594 0.73308 Subgenic 0.97318 0.79644 0.87598 Coding 0.85125 0.64306 0.73265 Genic 0.97236 0.78402 0.86809 Reverse for Sequence contig_3476 - ID 79 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24351 4 88 0 Non Coding 27108 32 60 44 UTR 487 288 8 13 Phase 0 320 809 0 0 Coding 1335 10 2417 13 Phase 1 331 0 781 0 Intron 292 0 10 1302 Phase 2 336 0 0 797 Precision Recall F1 Precision Recall F1 Intergenic 0.92012 0.99624 0.95667 Non Coding 0.96487 0.99501 0.97971 UTR 0.95364 0.36181 0.52459 Phase 0 0.96195 0.71656 0.82132 Coding 0.95799 0.64026 0.76755 Phase 1 0.92866 0.70234 0.79980 Intron 0.98042 0.81172 0.88813 Phase 2 0.94768 0.70344 0.80750 Subgenic 0.96572 0.69139 0.80585 Coding 0.94610 0.70747 0.80956 Genic 0.96484 0.64891 0.77595 BP_Extractor for Sequence contig_3481 - ID 80 Forward for Sequence contig_3481 - ID 80 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23562 12 0 47 Non Coding 26194 12 13 15 UTR 19 675 7 24 Phase 0 16 1196 0 0 Coding 20 4 3603 42 Phase 1 22 0 1195 0 Intron 0 0 14 1846 Phase 2 19 0 0 1193 Precision Recall F1 Precision Recall F1 Intergenic 0.99835 0.99750 0.99792 Non Coding 0.99783 0.99848 0.99815 UTR 0.97685 0.93103 0.95339 Phase 0 0.99007 0.98680 0.98843 Coding 0.99421 0.98201 0.98807 Phase 1 0.98924 0.98192 0.98557 Intron 0.94232 0.99247 0.96675 Phase 2 0.98758 0.98432 0.98595 Subgenic 0.97600 0.98553 0.98074 Coding 0.98896 0.98434 0.98665 Genic 0.97609 0.97921 0.97765 Reverse for Sequence contig_3481 - ID 80 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20687 12 0 0 Non Coding 24840 47 44 46 UTR 179 321 1 0 Phase 0 684 991 0 0 Coding 2823 7 3082 26 Phase 1 587 0 994 0 Intron 752 4 31 1950 Phase 2 650 0 0 992 Precision Recall F1 Precision Recall F1 Intergenic 0.84641 0.99942 0.91657 Non Coding 0.92822 0.99451 0.96022 UTR 0.93314 0.64072 0.75976 Phase 0 0.95472 0.59164 0.73056 Coding 0.98972 0.51903 0.68095 Phase 1 0.95761 0.62872 0.75907 Intron 0.98684 0.71246 0.82750 Phase 2 0.95568 0.60414 0.74030 Subgenic 0.98861 0.58006 0.73113 Coding 0.95601 0.60780 0.74314 Genic 0.98509 0.58337 0.73279 BP_Extractor for Sequence contig_3489 - ID 81 Forward for Sequence contig_3489 - ID 81 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2363 3 0 0 Non Coding 7132 28 26 32 UTR 10 675 8 0 Phase 0 2 581 0 0 Coding 7 0 1783 4 Phase 1 2 0 582 0 Intron 10 1 35 4065 Phase 2 2 0 0 577 Precision Recall F1 Precision Recall F1 Intergenic 0.98870 0.99873 0.99369 Non Coding 0.99916 0.98809 0.99359 UTR 0.99411 0.97403 0.98397 Phase 0 0.95402 0.99657 0.97483 Coding 0.97645 0.99387 0.98508 Phase 1 0.95724 0.99658 0.97651 Intron 0.99902 0.98881 0.99389 Phase 2 0.94745 0.99655 0.97138 Subgenic 0.99203 0.99035 0.99119 Coding 0.95290 0.99656 0.97424 Genic 0.99224 0.98863 0.99043 Reverse for Sequence contig_3489 - ID 81 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8964 0 0 0 Non Coding 8964 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_3559 - ID 82 Forward for Sequence contig_3559 - ID 82 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19512 0 0 0 Non Coding 19512 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_3559 - ID 82 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18162 8 0 0 Non Coding 18440 2 1 2 UTR 67 128 0 0 Phase 0 38 322 0 0 Coding 147 3 972 0 Phase 1 30 0 323 0 Intron 25 0 0 0 Phase 2 32 0 0 322 Precision Recall F1 Precision Recall F1 Intergenic 0.98701 0.99956 0.99325 Non Coding 0.99461 0.99973 0.99716 UTR 0.92086 0.65641 0.76647 Phase 0 0.99383 0.89444 0.94152 Coding 1.00000 0.86631 0.92837 Phase 1 0.99691 0.91501 0.95421 Intron NaN 0.00000 0.00000 Phase 2 0.99383 0.90960 0.94985 Subgenic 1.00000 0.84743 0.91741 Coding 0.99486 0.90628 0.94850 Genic 0.99010 0.81967 0.89686 BP_Extractor for Sequence contig_3587 - ID 83 Forward for Sequence contig_3587 - ID 83 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12255 0 0 0 Non Coding 12255 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_3587 - ID 83 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9394 1 9 0 Non Coding 10492 72 77 73 UTR 0 329 14 0 Phase 0 1 515 0 0 Coding 0 0 1735 2 Phase 1 0 0 510 0 Intron 15 0 3 753 Phase 2 1 0 0 514 Precision Recall F1 Precision Recall F1 Intergenic 0.99841 0.99894 0.99867 Non Coding 0.99981 0.97928 0.98944 UTR 0.99697 0.95918 0.97771 Phase 0 0.87734 0.99806 0.93382 Coding 0.98524 0.99885 0.99200 Phase 1 0.86882 1.00000 0.92981 Intron 0.99735 0.97665 0.98689 Phase 2 0.87564 0.99806 0.93285 Subgenic 0.98887 0.99203 0.99045 Coding 0.87394 0.99870 0.93216 Genic 0.98981 0.98807 0.98894 BP_Extractor for Sequence contig_3730 - ID 84 Forward for Sequence contig_3730 - ID 84 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4701 8 1 0 Non Coding 6468 17 17 19 UTR 27 314 5 16 Phase 0 27 382 0 0 Coding 64 29 1186 29 Phase 1 24 0 382 0 Intron 13 1 5 1339 Phase 2 22 0 0 380 Precision Recall F1 Precision Recall F1 Intergenic 0.97836 0.99809 0.98812 Non Coding 0.98884 0.99187 0.99035 UTR 0.89205 0.86740 0.87955 Phase 0 0.95739 0.93399 0.94554 Coding 0.99081 0.90673 0.94691 Phase 1 0.95739 0.94089 0.94907 Intron 0.96749 0.98601 0.97666 Phase 2 0.95238 0.94527 0.94881 Subgenic 0.97830 0.94711 0.96245 Coding 0.95572 0.94002 0.94780 Genic 0.96795 0.93758 0.95252 Reverse for Sequence contig_3730 - ID 84 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7249 0 0 0 Non Coding 7334 1 0 0 UTR 0 77 0 0 Phase 0 0 133 0 0 Coding 0 3 402 0 Phase 1 1 0 134 0 Intron 7 0 0 0 Phase 2 1 0 0 134 Precision Recall F1 Precision Recall F1 Intergenic 0.99904 1.00000 0.99952 Non Coding 0.99973 0.99986 0.99980 UTR 0.96250 1.00000 0.98089 Phase 0 0.99254 1.00000 0.99625 Coding 1.00000 0.99259 0.99628 Phase 1 1.00000 0.99259 0.99628 Intron NaN 0.00000 0.00000 Phase 2 1.00000 0.99259 0.99628 Subgenic 1.00000 0.97573 0.98771 Coding 0.99751 0.99504 0.99627 Genic 0.99378 0.97955 0.98661 BP_Extractor for Sequence contig_3736 - ID 85 Forward for Sequence contig_3736 - ID 85 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14178 4 128 101 Non Coding 15831 386 359 389 UTR 12 384 7 19 Phase 0 11 866 0 0 Coding 23 2 3587 40 Phase 1 9 0 893 0 Intron 270 30 34 795 Phase 2 7 0 0 863 Precision Recall F1 Precision Recall F1 Intergenic 0.97894 0.98383 0.98138 Non Coding 0.99830 0.93316 0.96463 UTR 0.91429 0.90995 0.91211 Phase 0 0.69169 0.98746 0.81353 Coding 0.95501 0.98220 0.96841 Phase 1 0.71326 0.99002 0.82916 Intron 0.83246 0.70416 0.76296 Phase 2 0.68930 0.99195 0.81338 Subgenic 0.93016 0.91654 0.92330 Coding 0.69808 0.98981 0.81874 Genic 0.92886 0.91601 0.92239 Reverse for Sequence contig_3736 - ID 85 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16224 68 0 5 Non Coding 18846 0 0 0 UTR 5 373 0 0 Phase 0 5 252 0 0 Coding 23 3 756 0 Phase 1 3 0 252 0 Intron 10 1 0 2146 Phase 2 4 0 0 252 Precision Recall F1 Precision Recall F1 Intergenic 0.99766 0.99552 0.99659 Non Coding 0.99936 1.00000 0.99968 UTR 0.83820 0.98677 0.90644 Phase 0 1.00000 0.98054 0.99018 Coding 1.00000 0.96675 0.98309 Phase 1 1.00000 0.98824 0.99408 Intron 0.99768 0.99490 0.99629 Phase 2 1.00000 0.98438 0.99213 Subgenic 0.99828 0.98741 0.99282 Coding 1.00000 0.98438 0.99213 Genic 0.97703 0.98734 0.98216 BP_Extractor for Sequence contig_3759 - ID 86 Forward for Sequence contig_3759 - ID 86 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15899 28 4 34 Non Coding 16355 69 77 88 UTR 41 271 7 0 Phase 0 12 687 0 0 Coding 89 6 2256 20 Phase 1 15 0 679 0 Intron 1 4 1 6 Phase 2 17 0 0 668 Precision Recall F1 Precision Recall F1 Intergenic 0.99183 0.99587 0.99384 Non Coding 0.99732 0.98589 0.99157 UTR 0.87702 0.84953 0.86306 Phase 0 0.90873 0.98283 0.94433 Coding 0.99471 0.95150 0.97262 Phase 1 0.89815 0.97839 0.93655 Intron 0.10000 0.50000 0.16667 Phase 2 0.88360 0.97518 0.92713 Subgenic 0.97165 0.94922 0.96031 Coding 0.89683 0.97883 0.93603 Genic 0.96056 0.93745 0.94887 Reverse for Sequence contig_3759 - ID 86 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12512 3 174 82 Non Coding 13594 398 407 416 UTR 46 266 21 9 Phase 0 50 1239 0 3 Coding 316 19 4675 109 Phase 1 54 2 1229 0 Intron 60 8 47 320 Phase 2 52 0 3 1220 Precision Recall F1 Precision Recall F1 Intergenic 0.96737 0.97972 0.97351 Non Coding 0.98865 0.91758 0.95179 UTR 0.89865 0.77778 0.83386 Phase 0 0.75595 0.95898 0.84545 Coding 0.95078 0.91326 0.93165 Phase 1 0.74985 0.95642 0.84063 Intron 0.61538 0.73563 0.67016 Phase 2 0.74436 0.95686 0.83734 Subgenic 0.91871 0.89935 0.90893 Coding 0.75005 0.95742 0.84114 Genic 0.91767 0.89230 0.90481 BP_Extractor for Sequence contig_3797 - ID 87 Forward for Sequence contig_3797 - ID 87 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22658 0 0 0 Non Coding 22821 0 0 0 UTR 73 0 0 0 Phase 0 47 0 0 0 Coding 198 0 0 0 Phase 1 40 0 0 0 Intron 23 0 0 0 Phase 2 44 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98719 1.00000 0.99355 Non Coding 0.99429 1.00000 0.99714 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_3797 - ID 87 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16224 7 10 35 Non Coding 18327 136 113 125 UTR 30 983 21 14 Phase 0 70 1340 0 0 Coding 151 17 4368 206 Phase 1 65 0 1363 0 Intron 48 3 29 806 Phase 2 62 0 0 1351 Precision Recall F1 Precision Recall F1 Intergenic 0.98608 0.99681 0.99141 Non Coding 0.98937 0.98000 0.98466 UTR 0.97327 0.93798 0.95530 Phase 0 0.90786 0.95035 0.92862 Coding 0.98645 0.92113 0.95267 Phase 1 0.92344 0.95448 0.93871 Intron 0.75966 0.90971 0.82794 Phase 2 0.91531 0.95612 0.93527 Subgenic 0.94261 0.91933 0.93083 Coding 0.91554 0.95366 0.93421 Genic 0.94738 0.92226 0.93465 BP_Extractor for Sequence contig_3844 - ID 88 Forward for Sequence contig_3844 - ID 88 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 36896 2 13 99 Non Coding 38150 118 124 124 UTR 31 105 9 0 Phase 0 19 278 0 0 Coding 55 4 1139 21 Phase 1 21 0 272 0 Intron 291 6 27 700 Phase 2 20 0 0 272 Precision Recall F1 Precision Recall F1 Intergenic 0.98989 0.99692 0.99339 Non Coding 0.99843 0.99050 0.99445 UTR 0.89744 0.72414 0.80153 Phase 0 0.70202 0.93603 0.80231 Coding 0.95875 0.93437 0.94641 Phase 1 0.68687 0.92833 0.78955 Intron 0.85366 0.68359 0.75922 Phase 2 0.68687 0.93151 0.79070 Subgenic 0.91584 0.81988 0.86521 Coding 0.69192 0.93197 0.79420 Genic 0.91482 0.81407 0.86151 Reverse for Sequence contig_3844 - ID 88 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26297 16 260 380 Non Coding 31857 485 507 506 UTR 49 627 17 12 Phase 0 94 1927 0 4 Coding 318 7 6900 179 Phase 1 98 4 1903 0 Intron 261 16 71 3988 Phase 2 101 0 6 1906 Precision Recall F1 Precision Recall F1 Intergenic 0.97668 0.97566 0.97617 Non Coding 0.99089 0.95509 0.97266 UTR 0.94144 0.88936 0.91466 Phase 0 0.79760 0.95160 0.86782 Coding 0.95199 0.93193 0.94185 Phase 1 0.78767 0.94913 0.86089 Intron 0.87475 0.91974 0.89668 Phase 2 0.78891 0.94685 0.86069 Subgenic 0.92216 0.92743 0.92479 Coding 0.79139 0.94920 0.86314 Genic 0.92319 0.92527 0.92423 BP_Extractor for Sequence contig_3888 - ID 89 Forward for Sequence contig_3888 - ID 89 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3792 0 0 0 Non Coding 3792 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_3888 - ID 89 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2081 6 2 32 Non Coding 2640 64 67 66 UTR 9 159 5 3 Phase 0 4 315 0 0 Coding 15 15 1090 23 Phase 1 6 0 312 0 Intron 42 21 40 249 Phase 2 5 0 0 313 Precision Recall F1 Precision Recall F1 Intergenic 0.96926 0.98114 0.97516 Non Coding 0.99435 0.93056 0.96140 UTR 0.79104 0.90341 0.84350 Phase 0 0.83113 0.98746 0.90258 Coding 0.95866 0.95363 0.95614 Phase 1 0.82322 0.98113 0.89527 Intron 0.81107 0.70739 0.75569 Phase 2 0.82586 0.98428 0.89813 Subgenic 0.92729 0.89565 0.91119 Coding 0.82674 0.98429 0.89866 Genic 0.91064 0.89647 0.90350 BP_Extractor for Sequence contig_4005 - ID 90 Forward for Sequence contig_4005 - ID 90 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 70364 10 185 174 Non Coding 83661 654 695 698 UTR 493 1427 67 38 Phase 0 358 3118 0 1 Coding 1573 57 10957 185 Phase 1 327 2 3079 1 Intron 870 109 116 9338 Phase 2 292 1 1 3075 Precision Recall F1 Precision Recall F1 Intergenic 0.95995 0.99478 0.97705 Non Coding 0.98846 0.97612 0.98225 UTR 0.89021 0.70469 0.78666 Phase 0 0.82596 0.89675 0.85990 Coding 0.96751 0.85789 0.90941 Phase 1 0.81563 0.90320 0.85718 Intron 0.95922 0.89504 0.92602 Phase 2 0.81457 0.91273 0.86086 Subgenic 0.96368 0.87460 0.91698 Coding 0.81872 0.90414 0.85931 Genic 0.95848 0.86096 0.90711 Reverse for Sequence contig_4005 - ID 90 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 64364 45 491 1087 Non Coding 82520 676 710 698 UTR 156 1179 49 79 Phase 0 53 3750 1 0 Coding 229 14 12674 234 Phase 1 52 1 3718 1 Intron 240 29 73 15020 Phase 2 51 2 0 3730 Precision Recall F1 Precision Recall F1 Intergenic 0.99038 0.97540 0.98284 Non Coding 0.99811 0.97537 0.98661 UTR 0.93054 0.80588 0.86374 Phase 0 0.84669 0.98580 0.91097 Coding 0.95386 0.96373 0.95877 Phase 1 0.83947 0.98568 0.90672 Intron 0.91474 0.97774 0.94519 Phase 2 0.84218 0.98599 0.90843 Subgenic 0.93224 0.97128 0.95136 Coding 0.84278 0.98583 0.90871 Genic 0.93217 0.96320 0.94743 BP_Extractor for Sequence contig_4009 - ID 91 Forward for Sequence contig_4009 - ID 91 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19471 0 0 0 Non Coding 19471 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_4009 - ID 91 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16232 7 7 27 Non Coding 17474 151 169 155 UTR 21 329 23 44 Phase 0 9 505 0 0 Coding 38 2 1882 26 Phase 1 11 0 487 0 Intron 40 66 56 671 Phase 2 9 0 0 501 Precision Recall F1 Precision Recall F1 Intergenic 0.99394 0.99748 0.99571 Non Coding 0.99834 0.97354 0.98578 UTR 0.81436 0.78897 0.80146 Phase 0 0.76982 0.98249 0.86325 Coding 0.95630 0.96612 0.96118 Phase 1 0.74238 0.97791 0.84402 Intron 0.87370 0.80552 0.83823 Phase 2 0.76372 0.98235 0.85935 Subgenic 0.93311 0.91802 0.92550 Coding 0.75864 0.98095 0.85559 Genic 0.91783 0.90119 0.90944 BP_Extractor for Sequence contig_4030 - ID 92 Forward for Sequence contig_4030 - ID 92 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17833 37 310 75 Non Coding 27381 415 423 425 UTR 62 660 15 26 Phase 0 23 1211 2 3 Coding 292 5 4542 59 Phase 1 27 3 1200 1 Intron 33 6 20 8378 Phase 2 35 0 4 1200 Precision Recall F1 Precision Recall F1 Intergenic 0.97876 0.97688 0.97782 Non Coding 0.99691 0.95591 0.97598 UTR 0.93220 0.86501 0.89735 Phase 0 0.74340 0.97740 0.84449 Coding 0.92940 0.92732 0.92836 Phase 1 0.73665 0.97482 0.83916 Intron 0.98126 0.99301 0.98710 Phase 2 0.73665 0.96852 0.83682 Subgenic 0.96238 0.96888 0.96562 Coding 0.73890 0.97358 0.84016 Genic 0.96087 0.96326 0.96206 Reverse for Sequence contig_4030 - ID 92 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26269 1 3 1 Non Coding 29874 78 77 81 UTR 58 47 22 30 Phase 0 72 660 0 13 Coding 584 4 2208 11 Phase 1 75 15 663 0 Intron 148 0 26 2941 Phase 2 73 0 13 659 Precision Recall F1 Precision Recall F1 Intergenic 0.97080 0.99981 0.98509 Non Coding 0.99269 0.99216 0.99243 UTR 0.90385 0.29936 0.44976 Phase 0 0.87649 0.88591 0.88117 Coding 0.97742 0.78660 0.87169 Phase 1 0.88048 0.88048 0.88048 Intron 0.98592 0.94414 0.96458 Phase 2 0.87517 0.88456 0.87984 Subgenic 0.98226 0.86947 0.92243 Coding 0.87738 0.88364 0.88050 Genic 0.98149 0.85475 0.91374 BP_Extractor for Sequence contig_4040 - ID 93 Forward for Sequence contig_4040 - ID 93 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 46108 0 0 0 Non Coding 46111 0 0 0 UTR 3 0 0 0 Phase 0 2 0 0 0 Coding 3 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99987 1.00000 0.99993 Non Coding 0.99993 1.00000 0.99997 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_4040 - ID 93 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 43715 3 37 407 Non Coding 45250 30 31 30 UTR 1 71 15 21 Phase 0 2 255 0 0 Coding 0 0 801 17 Phase 1 4 0 254 0 Intron 0 0 2 1024 Phase 2 3 0 0 255 Precision Recall F1 Precision Recall F1 Intergenic 0.99998 0.98988 0.99490 Non Coding 0.99980 0.99799 0.99890 UTR 0.95946 0.65741 0.78022 Phase 0 0.89474 0.99222 0.94096 Coding 0.93684 0.97922 0.95756 Phase 1 0.89123 0.98450 0.93554 Intron 0.69707 0.99805 0.82084 Phase 2 0.89474 0.98837 0.93923 Subgenic 0.78528 0.98970 0.87572 Coding 0.89357 0.98836 0.93857 Genic 0.79066 0.97131 0.87172 BP_Extractor for Sequence contig_4091 - ID 94 Forward for Sequence contig_4091 - ID 94 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13337 1 0 61 Non Coding 24506 79 86 80 UTR 279 98 2 4 Phase 0 28 1130 0 4 Coding 119 6 3579 124 Phase 1 30 3 1123 0 Intron 33 1 55 10533 Phase 2 32 0 3 1128 Precision Recall F1 Precision Recall F1 Intergenic 0.96870 0.99537 0.98185 Non Coding 0.99634 0.99010 0.99321 UTR 0.92453 0.25587 0.40082 Phase 0 0.93234 0.97246 0.95198 Coding 0.98432 0.93495 0.95900 Phase 1 0.92657 0.97145 0.94848 Intron 0.98237 0.99162 0.98698 Phase 2 0.93069 0.96991 0.94989 Subgenic 0.98287 0.97661 0.97973 Coding 0.92987 0.97127 0.95012 Genic 0.98244 0.95800 0.97007 Reverse for Sequence contig_4091 - ID 94 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27302 1 0 0 Non Coding 27485 11 8 12 UTR 0 123 0 0 Phase 0 3 235 0 0 Coding 0 0 730 14 Phase 1 3 0 238 0 Intron 0 0 8 54 Phase 2 3 0 0 234 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99996 0.99998 Non Coding 0.99967 0.99887 0.99927 UTR 0.99194 1.00000 0.99595 Phase 0 0.95528 0.98739 0.97107 Coding 0.98916 0.98118 0.98516 Phase 1 0.96748 0.98755 0.97741 Intron 0.79412 0.87097 0.83077 Phase 2 0.95122 0.98734 0.96894 Subgenic 0.97270 0.97270 0.97270 Coding 0.95799 0.98743 0.97249 Genic 0.97527 0.97632 0.97579 BP_Extractor for Sequence contig_4285 - ID 95 Forward for Sequence contig_4285 - ID 95 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28025 7 71 84 Non Coding 28730 99 96 103 UTR 83 268 2 0 Phase 0 18 297 0 0 Coding 45 4 1106 28 Phase 1 15 0 300 0 Intron 31 1 9 207 Phase 2 20 0 0 293 Precision Recall F1 Precision Recall F1 Intergenic 0.99436 0.99425 0.99431 Non Coding 0.99816 0.98973 0.99393 UTR 0.95714 0.75921 0.84676 Phase 0 0.75000 0.94286 0.83544 Coding 0.93098 0.93491 0.93294 Phase 1 0.75758 0.95238 0.84388 Intron 0.64890 0.83468 0.73016 Phase 2 0.73990 0.93610 0.82652 Subgenic 0.87127 0.91754 0.89381 Coding 0.74916 0.94380 0.83529 Genic 0.88472 0.88621 0.88547 Reverse for Sequence contig_4285 - ID 95 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22651 21 144 88 Non Coding 26019 174 173 171 UTR 68 916 17 10 Phase 0 43 1089 2 2 Coding 331 2 3652 44 Phase 1 49 5 1093 2 Intron 715 0 0 1312 Phase 2 47 3 3 1096 Precision Recall F1 Precision Recall F1 Intergenic 0.95312 0.98895 0.97071 Non Coding 0.99469 0.98048 0.98753 UTR 0.97551 0.90603 0.93949 Phase 0 0.85681 0.95863 0.90486 Coding 0.95778 0.90643 0.93140 Phase 1 0.85995 0.95126 0.90331 Intron 0.90234 0.64726 0.75381 Phase 2 0.86231 0.95387 0.90579 Subgenic 0.94247 0.81968 0.87680 Coding 0.85969 0.95457 0.90465 Genic 0.94747 0.83204 0.88601 BP_Extractor for Sequence contig_4366 - ID 96 Forward for Sequence contig_4366 - ID 96 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3254 0 0 0 Non Coding 3254 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_4366 - ID 96 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3219 0 0 0 Non Coding 3225 0 0 0 UTR 5 0 0 0 Phase 0 9 0 0 0 Coding 30 0 0 0 Phase 1 10 0 0 0 Intron 0 0 0 0 Phase 2 10 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98924 1.00000 0.99459 Non Coding 0.99109 1.00000 0.99552 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_4613 - ID 97 Forward for Sequence contig_4613 - ID 97 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31413 4 152 97 Non Coding 38339 292 294 304 UTR 161 657 21 11 Phase 0 61 1431 4 0 Coding 227 9 4984 50 Phase 1 50 0 1430 3 Intron 467 2 27 5411 Phase 2 59 5 0 1421 Precision Recall F1 Precision Recall F1 Intergenic 0.97350 0.99201 0.98267 Non Coding 0.99559 0.97731 0.98636 UTR 0.97768 0.77294 0.86334 Phase 0 0.82812 0.95655 0.88772 Coding 0.96142 0.94573 0.95351 Phase 1 0.82755 0.96426 0.89069 Intron 0.97163 0.91603 0.94301 Phase 2 0.82234 0.95690 0.88453 Subgenic 0.96671 0.93003 0.94802 Coding 0.82600 0.95923 0.88765 Genic 0.96735 0.91893 0.94252 Reverse for Sequence contig_4613 - ID 97 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34743 2 0 0 Non Coding 38621 12 17 15 UTR 41 262 13 0 Phase 0 168 1509 0 4 Coding 509 2 4543 22 Phase 1 160 5 1504 0 Intron 87 0 22 3447 Phase 2 166 0 5 1507 Precision Recall F1 Precision Recall F1 Intergenic 0.98200 0.99994 0.99089 Non Coding 0.98737 0.99886 0.99308 UTR 0.98496 0.82911 0.90034 Phase 0 0.98886 0.89768 0.94107 Coding 0.99235 0.89500 0.94116 Phase 1 0.98558 0.90114 0.94147 Intron 0.99366 0.96935 0.98135 Phase 2 0.98755 0.89809 0.94070 Subgenic 0.99292 0.92563 0.95809 Coding 0.98733 0.89897 0.94108 Genic 0.99266 0.92222 0.95614 BP_Extractor for Sequence contig_4759 - ID 98 Forward for Sequence contig_4759 - ID 98 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9883 29 0 0 Non Coding 11068 0 1 1 UTR 7 385 1 0 Phase 0 5 159 0 0 Coding 10 3 476 3 Phase 1 4 0 158 0 Intron 0 0 0 762 Phase 2 5 0 0 158 Precision Recall F1 Precision Recall F1 Intergenic 0.99828 0.99707 0.99768 Non Coding 0.99874 0.99982 0.99928 UTR 0.92326 0.97964 0.95062 Phase 0 1.00000 0.96951 0.98452 Coding 0.99790 0.96748 0.98246 Phase 1 0.99371 0.97531 0.98442 Intron 0.99608 1.00000 0.99804 Phase 2 0.99371 0.96933 0.98137 Subgenic 0.99678 0.98724 0.99199 Coding 0.99581 0.97137 0.98344 Genic 0.97830 0.98543 0.98185 Reverse for Sequence contig_4759 - ID 98 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11559 0 0 0 Non Coding 11559 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_4760 - ID 99 Forward for Sequence contig_4760 - ID 99 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24177 7 158 28 Non Coding 25987 150 158 155 UTR 88 418 10 11 Phase 0 66 636 0 0 Coding 256 4 2178 34 Phase 1 72 0 628 0 Intron 9 0 12 1167 Phase 2 74 0 0 631 Precision Recall F1 Precision Recall F1 Intergenic 0.98561 0.99208 0.98883 Non Coding 0.99191 0.98250 0.98718 UTR 0.97436 0.79317 0.87448 Phase 0 0.80916 0.90598 0.85484 Coding 0.92366 0.88107 0.90186 Phase 1 0.79898 0.89714 0.84522 Intron 0.94113 0.98232 0.96129 Phase 2 0.80280 0.89504 0.84641 Subgenic 0.92968 0.91393 0.92174 Coding 0.80365 0.89938 0.84882 Genic 0.93444 0.89873 0.91624 Reverse for Sequence contig_4760 - ID 99 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25977 1 265 29 Non Coding 26740 255 255 264 UTR 78 25 4 2 Phase 0 137 233 0 0 Coding 759 3 1189 22 Phase 1 100 0 233 0 Intron 26 0 6 171 Phase 2 116 0 0 224 Precision Recall F1 Precision Recall F1 Intergenic 0.96785 0.98877 0.97820 Non Coding 0.98697 0.97187 0.97936 UTR 0.86207 0.22936 0.36232 Phase 0 0.47746 0.62973 0.54312 Coding 0.81216 0.60264 0.69188 Phase 1 0.47746 0.69970 0.56760 Intron 0.76339 0.84236 0.80094 Phase 2 0.45902 0.65882 0.54106 Subgenic 0.80569 0.62500 0.70393 Coding 0.47131 0.66155 0.55046 Genic 0.80664 0.60613 0.69215 BP_Extractor for Sequence contig_4763 - ID 100 Forward for Sequence contig_4763 - ID 100 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4494 0 0 0 Non Coding 4710 0 0 0 UTR 75 0 0 0 Phase 0 176 0 0 0 Coding 611 0 0 0 Phase 1 172 0 0 0 Intron 53 0 0 0 Phase 2 175 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85878 1.00000 0.92403 Non Coding 0.90006 1.00000 0.94740 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_4763 - ID 100 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5233 0 0 0 Non Coding 5233 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_4918 - ID 101 Forward for Sequence contig_4918 - ID 101 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 111133 29 405 430 Non Coding 122708 797 883 858 UTR 337 1772 71 127 Phase 0 980 7627 10 8 Coding 4162 46 24627 299 Phase 1 1024 8 7540 11 Intron 1032 19 223 6315 Phase 2 989 10 9 7565 Precision Recall F1 Precision Recall F1 Intergenic 0.95259 0.99229 0.97203 Non Coding 0.97619 0.97974 0.97796 UTR 0.94962 0.76810 0.84927 Phase 0 0.90346 0.88429 0.89377 Coding 0.97240 0.84530 0.90441 Phase 1 0.89315 0.87848 0.88576 Intron 0.88063 0.83213 0.85569 Phase 2 0.89611 0.88242 0.88922 Subgenic 0.95215 0.84258 0.89402 Coding 0.89758 0.88173 0.88958 Genic 0.95201 0.83818 0.89147 Reverse for Sequence contig_4918 - ID 101 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 137925 6 161 21 Non Coding 142171 244 289 271 UTR 430 485 14 37 Phase 0 990 1747 1 0 Coding 4121 12 5769 154 Phase 1 936 0 1702 1 Intron 289 27 32 1544 Phase 2 954 1 0 1720 Precision Recall F1 Precision Recall F1 Intergenic 0.96610 0.99864 0.98210 Non Coding 0.98014 0.99438 0.98721 UTR 0.91509 0.50207 0.64840 Phase 0 0.87701 0.63806 0.73869 Coding 0.96536 0.57369 0.71969 Phase 1 0.85442 0.64494 0.73505 Intron 0.87927 0.81607 0.84649 Phase 2 0.86345 0.64299 0.73709 Subgenic 0.94581 0.61207 0.74319 Coding 0.86496 0.64195 0.73695 Genic 0.94384 0.60384 0.73649 BP_Extractor for Sequence contig_5096 - ID 102 Forward for Sequence contig_5096 - ID 102 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 56638 1 11 75 Non Coding 62426 37 39 42 UTR 226 215 16 63 Phase 0 757 711 0 4 Coding 3152 0 2222 36 Phase 1 630 4 709 0 Intron 307 1 7 3779 Phase 2 680 0 4 706 Precision Recall F1 Precision Recall F1 Intergenic 0.93891 0.99847 0.96777 Non Coding 0.96795 0.99811 0.98280 UTR 0.99078 0.41346 0.58345 Phase 0 0.94548 0.48302 0.63939 Coding 0.98493 0.41072 0.57970 Phase 1 0.94282 0.52792 0.67685 Intron 0.95598 0.92306 0.93923 Phase 2 0.93883 0.50791 0.65920 Subgenic 0.96650 0.63142 0.76383 Coding 0.94238 0.50559 0.65810 Genic 0.96732 0.62011 0.75574 Reverse for Sequence contig_5096 - ID 102 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 45454 10 154 122 Non Coding 56475 521 524 497 UTR 106 1092 93 42 Phase 0 120 2776 6 3 Coding 344 13 9549 241 Phase 1 122 0 2772 7 Intron 372 8 110 9039 Phase 2 126 5 0 2795 Precision Recall F1 Precision Recall F1 Intergenic 0.98224 0.99375 0.98796 Non Coding 0.99353 0.97342 0.98337 UTR 0.97240 0.81920 0.88925 Phase 0 0.84070 0.95559 0.89447 Coding 0.96396 0.94107 0.95238 Phase 1 0.83949 0.95553 0.89376 Intron 0.95712 0.94858 0.95283 Phase 2 0.84646 0.95523 0.89756 Subgenic 0.96062 0.94470 0.95260 Coding 0.84222 0.95545 0.89527 Genic 0.96127 0.93674 0.94885 BP_Extractor for Sequence contig_5108 - ID 103 Forward for Sequence contig_5108 - ID 103 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2947 1 21 70 Non Coding 5726 144 141 145 UTR 19 9 4 1 Phase 0 4 101 0 0 Coding 30 0 682 49 Phase 1 4 0 104 0 Intron 58 0 28 2554 Phase 2 4 0 0 100 Precision Recall F1 Precision Recall F1 Intergenic 0.96496 0.96973 0.96734 Non Coding 0.99791 0.93015 0.96284 UTR 0.90000 0.27273 0.41860 Phase 0 0.41224 0.96190 0.57714 Coding 0.92789 0.89619 0.91176 Phase 1 0.42449 0.96296 0.58924 Intron 0.95512 0.96742 0.96123 Phase 2 0.40816 0.96154 0.57307 Subgenic 0.94925 0.95148 0.95037 Coding 0.41497 0.96215 0.57985 Genic 0.94911 0.94496 0.94703 Reverse for Sequence contig_5108 - ID 103 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4908 0 0 0 Non Coding 5148 0 0 0 UTR 37 0 0 0 Phase 0 443 0 0 0 Coding 1528 0 0 0 Phase 1 444 0 0 0 Intron 0 0 0 0 Phase 2 438 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.75823 1.00000 0.86249 Non Coding 0.79530 1.00000 0.88598 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_5164 - ID 104 Forward for Sequence contig_5164 - ID 104 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7303 5 0 0 Non Coding 11447 29 29 31 UTR 5 126 48 5 Phase 0 1 370 0 0 Coding 1 1 1142 7 Phase 1 4 0 370 0 Intron 0 0 7 4001 Phase 2 2 0 0 368 Precision Recall F1 Precision Recall F1 Intergenic 0.99918 0.99932 0.99925 Non Coding 0.99939 0.99229 0.99582 UTR 0.95455 0.68478 0.79747 Phase 0 0.92732 0.99730 0.96104 Coding 0.95405 0.99218 0.97274 Phase 1 0.92732 0.98930 0.95731 Intron 0.99701 0.99825 0.99763 Phase 2 0.92231 0.99459 0.95709 Subgenic 0.98714 0.99690 0.99200 Coding 0.92565 0.99372 0.95848 Genic 0.98633 0.98615 0.98624 Reverse for Sequence contig_5164 - ID 104 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8949 1 2 83 Non Coding 11247 5 7 5 UTR 0 259 9 7 Phase 0 1 461 0 0 Coding 0 6 1385 1 Phase 1 3 0 459 0 Intron 43 8 2 1896 Phase 2 2 0 0 461 Precision Recall F1 Precision Recall F1 Intergenic 0.99522 0.99048 0.99284 Non Coding 0.99947 0.99849 0.99898 UTR 0.94526 0.94182 0.94353 Phase 0 0.98927 0.99784 0.99353 Coding 0.99070 0.99497 0.99283 Phase 1 0.98498 0.99351 0.98922 Intron 0.95420 0.97281 0.96341 Phase 2 0.98927 0.99568 0.99247 Subgenic 0.96928 0.98204 0.97562 Coding 0.98784 0.99567 0.99174 Genic 0.96748 0.97898 0.97320 BP_Extractor for Sequence contig_5170 - ID 105 Forward for Sequence contig_5170 - ID 105 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31058 1 1 1 Non Coding 34353 41 42 42 UTR 284 455 7 13 Phase 0 206 374 0 0 Coding 582 2 1221 43 Phase 1 205 0 373 0 Intron 15 2 16 2510 Phase 2 202 0 0 373 Precision Recall F1 Precision Recall F1 Intergenic 0.97242 0.99990 0.98597 Non Coding 0.98247 0.99637 0.98937 UTR 0.98913 0.59947 0.74651 Phase 0 0.90120 0.64483 0.75176 Coding 0.98072 0.66071 0.78952 Phase 1 0.89880 0.64533 0.75126 Intron 0.97780 0.98702 0.98239 Phase 2 0.89880 0.64870 0.75354 Subgenic 0.97875 0.84969 0.90967 Coding 0.89960 0.64628 0.75218 Genic 0.97987 0.81282 0.88856 Reverse for Sequence contig_5170 - ID 105 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23718 0 0 0 Non Coding 31932 23 27 21 UTR 113 410 14 0 Phase 0 9 1373 22 0 Coding 22 2 4219 22 Phase 1 10 0 1368 21 Intron 31 0 18 7642 Phase 2 9 21 0 1375 Precision Recall F1 Precision Recall F1 Intergenic 0.99305 1.00000 0.99651 Non Coding 0.99912 0.99778 0.99845 UTR 0.99515 0.76350 0.86407 Phase 0 0.96895 0.97792 0.97341 Coding 0.99247 0.98921 0.99084 Phase 1 0.96542 0.97784 0.97159 Intron 0.99713 0.99363 0.99538 Phase 2 0.97036 0.97865 0.97449 Subgenic 0.99547 0.99205 0.99376 Coding 0.96824 0.97814 0.97316 Genic 0.99546 0.98223 0.98880 BP_Extractor for Sequence contig_5342 - ID 106 Forward for Sequence contig_5342 - ID 106 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23588 0 0 0 Non Coding 23594 0 0 0 UTR 6 0 0 0 Phase 0 2 0 0 0 Coding 7 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99945 1.00000 0.99972 Non Coding 0.99970 1.00000 0.99985 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5342 - ID 106 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19266 2 0 29 Non Coding 20881 65 56 43 UTR 106 107 2 7 Phase 0 421 433 0 7 Coding 1494 1 1506 45 Phase 1 393 7 441 0 Intron 124 0 7 905 Phase 2 391 0 8 455 Precision Recall F1 Precision Recall F1 Intergenic 0.91787 0.99839 0.95644 Non Coding 0.94544 0.99221 0.96826 UTR 0.97273 0.48198 0.64458 Phase 0 0.85743 0.50290 0.63397 Coding 0.99406 0.49442 0.66038 Phase 1 0.87327 0.52438 0.65527 Intron 0.91785 0.87355 0.89515 Phase 2 0.90099 0.53279 0.66961 Subgenic 0.96401 0.59064 0.73249 Coding 0.87723 0.51995 0.65291 Genic 0.96438 0.58504 0.72827 BP_Extractor for Sequence contig_5426 - ID 107 Forward for Sequence contig_5426 - ID 107 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5367 0 0 0 Non Coding 5379 0 0 0 UTR 10 0 0 0 Phase 0 131 0 0 0 Coding 380 0 0 0 Phase 1 123 0 0 0 Intron 0 0 0 0 Phase 2 124 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93226 1.00000 0.96494 Non Coding 0.93434 1.00000 0.96606 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5426 - ID 107 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5746 0 0 0 Non Coding 5753 0 0 0 UTR 3 0 0 0 Phase 0 2 0 0 0 Coding 8 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99809 1.00000 0.99904 Non Coding 0.99931 1.00000 0.99965 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_5508 - ID 108 Forward for Sequence contig_5508 - ID 108 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17776 0 0 0 Non Coding 17776 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_5508 - ID 108 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16498 4 0 0 Non Coding 16949 0 3 1 UTR 12 164 3 0 Phase 0 28 253 0 0 Coding 255 0 756 0 Phase 1 25 0 250 0 Intron 6 8 0 70 Phase 2 15 0 0 252 Precision Recall F1 Precision Recall F1 Intergenic 0.98372 0.99976 0.99167 Non Coding 0.99600 0.99976 0.99788 UTR 0.93182 0.91620 0.92394 Phase 0 1.00000 0.90036 0.94757 Coding 0.99605 0.74777 0.85424 Phase 1 0.98814 0.90909 0.94697 Intron 1.00000 0.83333 0.90909 Phase 2 0.99605 0.94382 0.96923 Subgenic 0.99638 0.75434 0.85863 Coding 0.99473 0.91738 0.95449 Genic 0.98507 0.77708 0.86880 BP_Extractor for Sequence contig_5526 - ID 109 Forward for Sequence contig_5526 - ID 109 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9763 0 1 0 Non Coding 12873 44 42 31 UTR 16 83 8 7 Phase 0 3 318 27 0 Coding 21 0 1136 13 Phase 1 1 0 321 38 Intron 49 0 25 2926 Phase 2 1 28 0 321 Precision Recall F1 Precision Recall F1 Intergenic 0.99127 0.99990 0.99556 Non Coding 0.99961 0.99099 0.99528 UTR 1.00000 0.72807 0.84264 Phase 0 0.81538 0.91379 0.86179 Coding 0.97094 0.97094 0.97094 Phase 1 0.82308 0.89167 0.85600 Intron 0.99321 0.97533 0.98419 Phase 2 0.82308 0.91714 0.86757 Subgenic 0.98688 0.97410 0.98045 Coding 0.82051 0.90737 0.86176 Genic 0.98714 0.96755 0.97725 Reverse for Sequence contig_5526 - ID 109 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13947 0 0 0 Non Coding 13978 0 0 0 UTR 22 0 0 0 Phase 0 26 0 0 0 Coding 68 0 0 0 Phase 1 21 0 0 0 Intron 11 0 0 0 Phase 2 23 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99281 1.00000 0.99639 Non Coding 0.99502 1.00000 0.99750 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_5544 - ID 110 Forward for Sequence contig_5544 - ID 110 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 167461 35 668 314 Non Coding 183265 1268 1242 1242 UTR 710 1769 98 48 Phase 0 1779 4457 12 3 Coding 7211 81 16308 300 Phase 1 1747 2 4479 10 Intron 2066 55 137 8459 Phase 2 1718 10 4 4482 Precision Recall F1 Precision Recall F1 Intergenic 0.94372 0.99396 0.96819 Non Coding 0.97218 0.97994 0.97604 UTR 0.91186 0.67390 0.77503 Phase 0 0.77689 0.71301 0.74358 Coding 0.94753 0.68234 0.79336 Phase 1 0.78072 0.71802 0.74806 Intron 0.92742 0.78931 0.85281 Phase 2 0.78124 0.72127 0.75006 Subgenic 0.94057 0.71546 0.81271 Coding 0.77962 0.71743 0.74723 Genic 0.93860 0.71253 0.81009 Reverse for Sequence contig_5544 - ID 110 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 176676 45 181 210 Non Coding 185690 512 554 532 UTR 756 1531 36 45 Phase 0 2794 3416 16 10 Coding 10493 16 11575 159 Phase 1 2678 11 3376 16 Intron 1003 47 76 2871 Phase 2 2690 17 10 3398 Precision Recall F1 Precision Recall F1 Intergenic 0.93515 0.99754 0.96534 Non Coding 0.95790 0.99147 0.97439 UTR 0.93411 0.64654 0.76416 Phase 0 0.86350 0.54779 0.67033 Coding 0.97531 0.52039 0.67867 Phase 1 0.85339 0.55517 0.67271 Intron 0.87397 0.71829 0.78852 Phase 2 0.85895 0.55568 0.67481 Subgenic 0.95334 0.55053 0.69799 Coding 0.85861 0.55284 0.67261 Genic 0.95146 0.55848 0.70383 BP_Extractor for Sequence contig_5549 - ID 111 Forward for Sequence contig_5549 - ID 111 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17941 0 0 0 Non Coding 17950 0 0 0 UTR 15 0 0 0 Phase 0 11 0 0 0 Coding 24 0 0 0 Phase 1 10 0 0 0 Intron 0 0 0 0 Phase 2 9 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99783 1.00000 0.99891 Non Coding 0.99833 1.00000 0.99917 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5549 - ID 111 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13400 78 0 0 Non Coding 15170 10 12 12 UTR 5 645 7 1 Phase 0 21 905 0 3 Coding 14 16 2736 56 Phase 1 18 2 902 0 Intron 6 6 8 1002 Phase 2 20 0 3 902 Precision Recall F1 Precision Recall F1 Intergenic 0.99814 0.99421 0.99617 Non Coding 0.99613 0.99776 0.99694 UTR 0.86577 0.98024 0.91946 Phase 0 0.98691 0.97417 0.98050 Coding 0.99455 0.96953 0.98188 Phase 1 0.98364 0.97831 0.98097 Intron 0.94618 0.98043 0.96300 Phase 2 0.98364 0.97514 0.97937 Subgenic 0.98110 0.97242 0.97674 Coding 0.98473 0.97586 0.98028 Genic 0.96224 0.97357 0.96787 BP_Extractor for Sequence contig_5576 - ID 112 Forward for Sequence contig_5576 - ID 112 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9321 0 0 0 Non Coding 9016 0 0 0 UTR 13 0 0 0 Phase 0 164 0 0 0 Coding 59 0 0 0 Phase 1 111 0 0 0 Intron 0 0 0 0 Phase 2 102 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99233 1.00000 0.99615 Non Coding 0.95986 1.00000 0.97952 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5576 - ID 112 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8741 0 0 0 Non Coding 8664 0 0 0 UTR 14 0 0 0 Phase 0 249 0 0 0 Coding 638 0 0 0 Phase 1 238 0 0 0 Intron 0 0 0 0 Phase 2 242 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93059 1.00000 0.96405 Non Coding 0.92239 1.00000 0.95963 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_5638 - ID 113 Forward for Sequence contig_5638 - ID 113 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34768 0 0 0 Non Coding 35889 0 0 0 UTR 37 0 0 0 Phase 0 419 0 0 0 Coding 1352 0 0 0 Phase 1 417 0 0 0 Intron 995 0 0 0 Phase 2 427 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93583 1.00000 0.96685 Non Coding 0.96600 1.00000 0.98271 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5638 - ID 113 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22198 29 6 186 Non Coding 26869 251 245 263 UTR 70 950 19 26 Phase 0 38 3135 0 0 Coding 69 16 10083 152 Phase 1 46 0 3141 0 Intron 81 11 50 3206 Phase 2 41 0 0 3123 Precision Recall F1 Precision Recall F1 Intergenic 0.99019 0.99014 0.99016 Non Coding 0.99537 0.97253 0.98382 UTR 0.94433 0.89202 0.91743 Phase 0 0.92587 0.98802 0.95594 Coding 0.99262 0.97703 0.98476 Phase 1 0.92764 0.98557 0.95573 Intron 0.89804 0.95759 0.92686 Phase 2 0.92233 0.98704 0.95359 Subgenic 0.96802 0.97227 0.97014 Coding 0.92528 0.98688 0.95509 Genic 0.96640 0.96647 0.96644 BP_Extractor for Sequence contig_5704 - ID 114 Forward for Sequence contig_5704 - ID 114 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5518 0 0 0 Non Coding 5469 0 0 0 UTR 21 0 0 0 Phase 0 192 0 0 0 Coding 495 0 0 0 Phase 1 179 0 0 0 Intron 0 0 0 0 Phase 2 194 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91448 1.00000 0.95533 Non Coding 0.90636 1.00000 0.95088 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5704 - ID 114 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6034 0 0 0 Non Coding 6034 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_5800 - ID 115 Forward for Sequence contig_5800 - ID 115 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31740 0 0 0 Non Coding 31947 0 0 0 UTR 188 0 0 0 Phase 0 341 0 0 0 Coding 1008 0 0 0 Phase 1 339 0 0 0 Intron 31 0 0 0 Phase 2 340 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96278 1.00000 0.98104 Non Coding 0.96906 1.00000 0.98429 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5800 - ID 115 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27712 1 78 72 Non Coding 31545 58 60 62 UTR 99 42 2 1 Phase 0 246 165 0 0 Coding 1118 13 587 16 Phase 1 236 0 163 0 Intron 2683 3 2 538 Phase 2 271 0 0 161 Precision Recall F1 Precision Recall F1 Intergenic 0.87663 0.99458 0.93189 Non Coding 0.97669 0.99433 0.98543 UTR 0.71186 0.29167 0.41379 Phase 0 0.73991 0.40146 0.52050 Coding 0.87743 0.33852 0.48856 Phase 1 0.73094 0.40852 0.52412 Intron 0.85805 0.16677 0.27926 Phase 2 0.72197 0.37269 0.49160 Subgenic 0.86806 0.22681 0.35965 Coding 0.73094 0.39372 0.51177 Genic 0.86125 0.22864 0.36136 BP_Extractor for Sequence contig_5804 - ID 116 Forward for Sequence contig_5804 - ID 116 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1207 1 0 0 Non Coding 2858 4 0 4 UTR 2 196 2 0 Phase 0 0 313 0 0 Coding 0 0 948 0 Phase 1 0 0 317 0 Intron 0 0 1 1452 Phase 2 0 0 0 313 Precision Recall F1 Precision Recall F1 Intergenic 0.99835 0.99917 0.99876 Non Coding 1.00000 0.99721 0.99860 UTR 0.99492 0.98000 0.98741 Phase 0 0.98738 1.00000 0.99365 Coding 0.99685 1.00000 0.99842 Phase 1 1.00000 1.00000 1.00000 Intron 1.00000 0.99931 0.99966 Phase 2 0.98738 1.00000 0.99365 Subgenic 0.99875 0.99958 0.99917 Coding 0.99159 1.00000 0.99578 Genic 0.99846 0.99808 0.99827 Reverse for Sequence contig_5804 - ID 116 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3809 0 0 0 Non Coding 3809 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_5862 - ID 117 Forward for Sequence contig_5862 - ID 117 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12667 0 0 0 Non Coding 12733 0 0 0 UTR 25 0 0 0 Phase 0 21 0 0 0 Coding 82 0 0 0 Phase 1 7 0 0 0 Intron 0 0 0 0 Phase 2 13 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99162 1.00000 0.99579 Non Coding 0.99679 1.00000 0.99839 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5862 - ID 117 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7846 5 0 25 Non Coding 10825 7 10 7 UTR 5 415 4 0 Phase 0 3 640 0 0 Coding 1 0 1928 9 Phase 1 3 0 637 0 Intron 22 0 9 2505 Phase 2 2 0 0 640 Precision Recall F1 Precision Recall F1 Intergenic 0.99644 0.99619 0.99632 Non Coding 0.99926 0.99779 0.99852 UTR 0.98810 0.97877 0.98341 Phase 0 0.98918 0.99533 0.99225 Coding 0.99330 0.99484 0.99407 Phase 1 0.98454 0.99531 0.98990 Intron 0.98661 0.98778 0.98719 Phase 2 0.98918 0.99688 0.99302 Subgenic 0.98951 0.99084 0.99017 Coding 0.98764 0.99584 0.99172 Genic 0.98939 0.98979 0.98959 BP_Extractor for Sequence contig_5891 - ID 118 Forward for Sequence contig_5891 - ID 118 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3800 0 0 0 Non Coding 3800 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_5891 - ID 118 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3800 0 0 0 Non Coding 3800 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_5965 - ID 119 Forward for Sequence contig_5965 - ID 119 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18097 0 0 0 Non Coding 18180 0 0 0 UTR 39 0 0 0 Phase 0 25 0 0 0 Coding 103 0 0 0 Phase 1 22 0 0 0 Intron 14 0 0 0 Phase 2 26 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99145 1.00000 0.99571 Non Coding 0.99600 1.00000 0.99800 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_5965 - ID 119 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16666 0 0 0 Non Coding 17609 6 6 4 UTR 3 351 1 0 Phase 0 2 207 0 0 Coding 0 0 626 3 Phase 1 2 0 207 0 Intron 0 0 12 591 Phase 2 1 0 0 209 Precision Recall F1 Precision Recall F1 Intergenic 0.99982 1.00000 0.99991 Non Coding 0.99972 0.99909 0.99940 UTR 1.00000 0.98873 0.99433 Phase 0 0.97183 0.99043 0.98104 Coding 0.97966 0.99523 0.98738 Phase 1 0.97183 0.99043 0.98104 Intron 0.99495 0.98010 0.98747 Phase 2 0.98122 0.99524 0.98818 Subgenic 0.98702 0.98782 0.98742 Coding 0.97496 0.99204 0.98343 Genic 0.98990 0.98803 0.98896 BP_Extractor for Sequence contig_6026 - ID 120 Forward for Sequence contig_6026 - ID 120 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 44615 4 0 0 Non Coding 49603 5 7 6 UTR 109 428 1 0 Phase 0 216 140 0 0 Coding 1173 0 434 0 Phase 1 231 0 138 0 Intron 3539 0 0 397 Phase 2 215 0 0 139 Precision Recall F1 Precision Recall F1 Intergenic 0.90248 0.99991 0.94870 Non Coding 0.98683 0.99964 0.99319 UTR 0.99074 0.79554 0.88247 Phase 0 0.96552 0.39326 0.55888 Coding 0.99770 0.27007 0.42507 Phase 1 0.95172 0.37398 0.53696 Intron 1.00000 0.10086 0.18324 Phase 2 0.95862 0.39266 0.55711 Subgenic 0.99880 0.14992 0.26071 Coding 0.95862 0.38647 0.55086 Genic 0.99604 0.20704 0.34282 Reverse for Sequence contig_6026 - ID 120 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 50684 0 0 0 Non Coding 50697 0 0 0 UTR 5 0 0 0 Phase 0 1 0 0 0 Coding 6 0 0 0 Phase 1 2 0 0 0 Intron 5 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99968 1.00000 0.99984 Non Coding 0.99994 1.00000 0.99997 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_6158 - ID 121 Forward for Sequence contig_6158 - ID 121 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2828 0 0 0 Non Coding 2829 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99965 1.00000 0.99982 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 Reverse for Sequence contig_6158 - ID 121 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2829 0 0 0 Non Coding 2829 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_6318 - ID 122 Forward for Sequence contig_6318 - ID 122 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17313 0 0 0 Non Coding 17318 0 0 0 UTR 3 0 0 0 Phase 0 1 0 0 0 Coding 5 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99954 1.00000 0.99977 Non Coding 0.99983 1.00000 0.99991 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_6318 - ID 122 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14370 0 49 29 Non Coding 16090 59 58 61 UTR 11 141 0 12 Phase 0 28 323 0 1 Coding 25 6 1096 70 Phase 1 24 2 325 0 Intron 10 2 7 1493 Phase 2 27 0 1 322 Precision Recall F1 Precision Recall F1 Intergenic 0.99681 0.99460 0.99570 Non Coding 0.99511 0.98906 0.99208 UTR 0.94631 0.85976 0.90096 Phase 0 0.84115 0.91761 0.87772 Coding 0.95139 0.91562 0.93316 Phase 1 0.84635 0.92593 0.88435 Intron 0.93080 0.98743 0.95828 Phase 2 0.83854 0.92000 0.87738 Subgenic 0.93940 0.95570 0.94748 Coding 0.84201 0.92118 0.87982 Genic 0.93976 0.95023 0.94496 BP_Extractor for Sequence contig_6382 - ID 123 Forward for Sequence contig_6382 - ID 123 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 38636 21 94 9 Non Coding 46817 153 162 181 UTR 94 714 44 31 Phase 0 81 2003 0 0 Coding 231 22 6270 156 Phase 1 86 0 1994 0 Intron 36 14 60 7102 Phase 2 82 0 0 1975 Precision Recall F1 Precision Recall F1 Intergenic 0.99074 0.99680 0.99376 Non Coding 0.99471 0.98952 0.99211 UTR 0.92607 0.80861 0.86336 Phase 0 0.92904 0.96113 0.94481 Coding 0.96939 0.93876 0.95383 Phase 1 0.92486 0.95865 0.94145 Intron 0.97314 0.98475 0.97891 Phase 2 0.91605 0.96014 0.93757 Subgenic 0.97138 0.96264 0.96699 Coding 0.92331 0.95997 0.94129 Genic 0.96898 0.95343 0.96114 Reverse for Sequence contig_6382 - ID 123 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 45722 3 0 30 Non Coding 50120 22 23 24 UTR 106 476 12 8 Phase 0 350 778 0 0 Coding 1366 1 2363 26 Phase 1 348 0 777 0 Intron 123 5 25 3268 Phase 2 316 0 0 776 Precision Recall F1 Precision Recall F1 Intergenic 0.96629 0.99928 0.98251 Non Coding 0.98017 0.99863 0.98931 UTR 0.98144 0.79070 0.87580 Phase 0 0.97250 0.68972 0.80705 Coding 0.98458 0.62913 0.76771 Phase 1 0.97125 0.69067 0.80727 Intron 0.98079 0.95528 0.96787 Phase 2 0.97000 0.71062 0.82030 Subgenic 0.98238 0.78459 0.87241 Coding 0.97125 0.69686 0.81149 Genic 0.98231 0.78506 0.87268 BP_Extractor for Sequence contig_6387 - ID 124 Forward for Sequence contig_6387 - ID 124 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8182 1 0 453 Non Coding 12386 13 15 15 UTR 7 186 14 3 Phase 0 8 649 0 0 Coding 15 1 1948 47 Phase 1 6 0 647 0 Intron 0 0 24 3513 Phase 2 8 0 0 647 Precision Recall F1 Precision Recall F1 Intergenic 0.99732 0.94743 0.97173 Non Coding 0.99823 0.99654 0.99738 UTR 0.98936 0.88571 0.93467 Phase 0 0.98036 0.98782 0.98408 Coding 0.98087 0.96867 0.97473 Phase 1 0.97734 0.99081 0.98403 Intron 0.87475 0.99321 0.93023 Phase 2 0.97734 0.98779 0.98254 Subgenic 0.90986 0.98432 0.94563 Coding 0.97835 0.98880 0.98355 Genic 0.91228 0.98072 0.94526 Reverse for Sequence contig_6387 - ID 124 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9534 2 148 3 Non Coding 10764 173 166 181 UTR 5 393 17 1 Phase 0 10 1019 10 0 Coding 68 5 3431 3 Phase 1 8 0 1025 11 Intron 54 5 7 718 Phase 2 9 9 0 1009 Precision Recall F1 Precision Recall F1 Intergenic 0.98685 0.98421 0.98553 Non Coding 0.99750 0.95392 0.97522 UTR 0.97037 0.94471 0.95737 Phase 0 0.84846 0.98075 0.90982 Coding 0.95226 0.97833 0.96512 Phase 1 0.85346 0.98180 0.91314 Intron 0.99034 0.91582 0.95162 Phase 2 0.84013 0.98247 0.90575 Subgenic 0.95864 0.96691 0.96276 Coding 0.84735 0.98167 0.90958 Genic 0.95965 0.96495 0.96229 BP_Extractor for Sequence contig_6466 - ID 125 Forward for Sequence contig_6466 - ID 125 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18841 4 179 0 Non Coding 23450 300 310 307 UTR 41 347 14 9 Phase 0 47 1271 0 0 Coding 193 5 4494 68 Phase 1 55 0 1261 0 Intron 1250 0 26 2842 Phase 2 48 0 0 1264 Precision Recall F1 Precision Recall F1 Intergenic 0.92699 0.99038 0.95764 Non Coding 0.99364 0.96237 0.97776 UTR 0.97472 0.84428 0.90482 Phase 0 0.80904 0.96434 0.87989 Coding 0.95353 0.94412 0.94880 Phase 1 0.80267 0.95821 0.87357 Intron 0.97362 0.69014 0.80773 Phase 2 0.80458 0.96341 0.87686 Subgenic 0.96122 0.82631 0.88867 Coding 0.80543 0.96199 0.87678 Genic 0.96182 0.82711 0.88939 Reverse for Sequence contig_6466 - ID 125 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23476 2 0 0 Non Coding 26891 2 4 2 UTR 0 118 3 6 Phase 0 4 467 0 0 Coding 0 3 1400 7 Phase 1 6 0 465 0 Intron 1 1 4 3292 Phase 2 5 0 0 467 Precision Recall F1 Precision Recall F1 Intergenic 0.99996 0.99991 0.99994 Non Coding 0.99944 0.99970 0.99957 UTR 0.95161 0.92913 0.94024 Phase 0 0.99574 0.99151 0.99362 Coding 0.99502 0.99291 0.99397 Phase 1 0.99147 0.98726 0.98936 Intron 0.99607 0.99818 0.99712 Phase 2 0.99574 0.98941 0.99256 Subgenic 0.99576 0.99660 0.99618 Coding 0.99431 0.98939 0.99185 Genic 0.99462 0.99483 0.99473 BP_Extractor for Sequence contig_6622 - ID 126 Forward for Sequence contig_6622 - ID 126 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14273 8 11 194 Non Coding 15063 118 110 111 UTR 17 135 16 0 Phase 0 10 450 0 0 Coding 52 1 1678 40 Phase 1 15 0 459 1 Intron 2 0 3 379 Phase 2 13 2 0 457 Precision Recall F1 Precision Recall F1 Intergenic 0.99505 0.98530 0.99015 Non Coding 0.99748 0.97799 0.98764 UTR 0.93750 0.80357 0.86538 Phase 0 0.78947 0.97826 0.87379 Coding 0.98244 0.94749 0.96465 Phase 1 0.80668 0.96632 0.87931 Intron 0.61827 0.98698 0.76028 Phase 2 0.80316 0.96822 0.87800 Subgenic 0.88626 0.95452 0.91912 Coding 0.79977 0.97086 0.87705 Genic 0.88925 0.94361 0.91562 Reverse for Sequence contig_6622 - ID 126 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16809 0 0 0 Non Coding 16809 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_6745 - ID 127 Forward for Sequence contig_6745 - ID 127 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28805 0 0 0 Non Coding 29637 0 0 0 UTR 164 0 0 0 Phase 0 644 0 0 0 Coding 1955 0 0 0 Phase 1 611 0 0 0 Intron 593 0 0 0 Phase 2 625 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91395 1.00000 0.95504 Non Coding 0.94035 1.00000 0.96926 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_6745 - ID 127 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28320 2 44 148 Non Coding 30683 24 23 22 UTR 107 88 8 0 Phase 0 164 88 0 0 Coding 583 0 284 0 Phase 1 167 0 89 0 Intron 1905 0 0 28 Phase 2 167 0 0 90 Precision Recall F1 Precision Recall F1 Intergenic 0.91606 0.99320 0.95307 Non Coding 0.98403 0.99776 0.99084 UTR 0.97778 0.43350 0.60068 Phase 0 0.78571 0.34921 0.48352 Coding 0.84524 0.32757 0.47215 Phase 1 0.79464 0.34766 0.48370 Intron 0.15909 0.01449 0.02655 Phase 2 0.80357 0.35019 0.48780 Subgenic 0.60938 0.11143 0.18841 Coding 0.79464 0.34902 0.48501 Genic 0.66445 0.13320 0.22191 BP_Extractor for Sequence contig_6746 - ID 128 Forward for Sequence contig_6746 - ID 128 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7612 2 3 0 Non Coding 10657 14 9 13 UTR 10 89 5 10 Phase 0 17 250 0 0 Coding 150 1 777 20 Phase 1 18 0 255 0 Intron 114 0 7 2700 Phase 2 16 0 0 251 Precision Recall F1 Precision Recall F1 Intergenic 0.96525 0.99934 0.98200 Non Coding 0.99524 0.99663 0.99593 UTR 0.96739 0.78070 0.86408 Phase 0 0.94697 0.93633 0.94162 Coding 0.98106 0.81962 0.89310 Phase 1 0.96591 0.93407 0.94972 Intron 0.98901 0.95711 0.97280 Phase 2 0.95076 0.94007 0.94539 Subgenic 0.98722 0.92253 0.95378 Coding 0.95455 0.93680 0.94559 Genic 0.98672 0.91836 0.95131 Reverse for Sequence contig_6746 - ID 128 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11490 0 0 0 Non Coding 11493 0 0 0 UTR 3 0 0 0 Phase 0 2 0 0 0 Coding 7 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99913 1.00000 0.99957 Non Coding 0.99939 1.00000 0.99970 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_6755 - ID 129 Forward for Sequence contig_6755 - ID 129 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2446 2 0 0 Non Coding 6799 25 17 24 UTR 1 103 10 2 Phase 0 9 295 0 0 Coding 1 6 933 26 Phase 1 7 0 303 0 Intron 4 3 17 4229 Phase 2 8 0 0 296 Precision Recall F1 Precision Recall F1 Intergenic 0.99755 0.99918 0.99837 Non Coding 0.99648 0.99039 0.99342 UTR 0.90351 0.88793 0.89565 Phase 0 0.92188 0.97039 0.94551 Coding 0.97188 0.96584 0.96885 Phase 1 0.94688 0.97742 0.96190 Intron 0.99342 0.99436 0.99389 Phase 2 0.92500 0.97368 0.94872 Subgenic 0.98946 0.98908 0.98927 Coding 0.93125 0.97386 0.95208 Genic 0.98762 0.98688 0.98725 Reverse for Sequence contig_6755 - ID 129 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7783 0 0 0 Non Coding 7783 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_6941 - ID 130 Forward for Sequence contig_6941 - ID 130 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4811 0 0 0 Non Coding 4839 0 0 0 UTR 25 0 0 0 Phase 0 15 0 0 0 Coding 49 0 0 0 Phase 1 16 0 0 0 Intron 1 0 0 0 Phase 2 16 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98465 1.00000 0.99227 Non Coding 0.99038 1.00000 0.99517 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_6941 - ID 130 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4886 0 0 0 Non Coding 4886 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_7000 - ID 131 Forward for Sequence contig_7000 - ID 131 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11958 0 0 0 Non Coding 12008 0 0 0 UTR 15 0 0 0 Phase 0 173 0 0 0 Coding 545 0 0 0 Phase 1 170 0 0 0 Intron 2 0 0 0 Phase 2 169 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95511 1.00000 0.97704 Non Coding 0.95911 1.00000 0.97913 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_7000 - ID 131 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4946 6 82 78 Non Coding 6390 256 232 238 UTR 49 223 12 18 Phase 0 16 1765 1 0 Coding 113 5 5947 47 Phase 1 26 0 1789 0 Intron 131 1 25 837 Phase 2 22 1 0 1784 Precision Recall F1 Precision Recall F1 Intergenic 0.94407 0.96753 0.95566 Non Coding 0.99008 0.89798 0.94178 UTR 0.94894 0.73841 0.83054 Phase 0 0.87290 0.99046 0.92797 Coding 0.98038 0.97300 0.97668 Phase 1 0.88477 0.98567 0.93250 Intron 0.85408 0.84205 0.84802 Phase 2 0.88229 0.98727 0.93184 Subgenic 0.96282 0.95469 0.95873 Coding 0.87999 0.98779 0.93078 Genic 0.96237 0.94587 0.95405 BP_Extractor for Sequence contig_7035 - ID 132 Forward for Sequence contig_7035 - ID 132 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10851 0 0 0 Non Coding 11243 0 0 0 UTR 43 0 0 0 Phase 0 196 0 0 0 Coding 789 0 0 0 Phase 1 189 0 0 0 Intron 140 0 0 0 Phase 2 195 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91779 1.00000 0.95713 Non Coding 0.95094 1.00000 0.97485 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_7035 - ID 132 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9122 1 3 29 Non Coding 9738 59 66 74 UTR 21 109 23 18 Phase 0 13 614 3 0 Coding 80 4 2009 15 Phase 1 16 0 611 6 Intron 3 1 5 380 Phase 2 16 7 0 600 Precision Recall F1 Precision Recall F1 Intergenic 0.98873 0.99640 0.99255 Non Coding 0.99540 0.97997 0.98763 UTR 0.94783 0.63743 0.76224 Phase 0 0.90294 0.97460 0.93740 Coding 0.98480 0.95304 0.96866 Phase 1 0.89853 0.96524 0.93069 Intron 0.85973 0.97686 0.91456 Phase 2 0.88235 0.96308 0.92095 Subgenic 0.96253 0.95675 0.95963 Coding 0.89461 0.96766 0.92970 Genic 0.96188 0.93628 0.94891 BP_Extractor for Sequence contig_7065 - ID 133 Forward for Sequence contig_7065 - ID 133 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11173 1 222 107 Non Coding 19560 501 543 509 UTR 35 202 22 46 Phase 0 17 1305 0 0 Coding 69 7 5123 76 Phase 1 24 0 1264 1 Intron 1185 5 54 6714 Phase 2 19 1 0 1297 Precision Recall F1 Precision Recall F1 Intergenic 0.89657 0.97131 0.93244 Non Coding 0.99694 0.92644 0.96040 UTR 0.93953 0.66230 0.77692 Phase 0 0.72219 0.98714 0.83413 Coding 0.94503 0.97118 0.95793 Phase 1 0.69950 0.98061 0.81654 Intron 0.96702 0.84368 0.90115 Phase 2 0.71776 0.98481 0.83035 Subgenic 0.95738 0.89451 0.92487 Coding 0.71315 0.98422 0.82704 Genic 0.95707 0.88927 0.92193 Reverse for Sequence contig_7065 - ID 133 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16996 1 0 73 Non Coding 23298 28 29 31 UTR 33 49 3 16 Phase 0 82 466 0 0 Coding 303 3 1456 37 Phase 1 88 0 465 0 Intron 31 0 23 6017 Phase 2 91 0 0 463 Precision Recall F1 Precision Recall F1 Intergenic 0.97886 0.99566 0.98719 Non Coding 0.98892 0.99624 0.99257 UTR 0.92453 0.48515 0.63636 Phase 0 0.94332 0.85036 0.89443 Coding 0.98246 0.80934 0.88753 Phase 1 0.94130 0.84087 0.88825 Intron 0.97949 0.99111 0.98526 Phase 2 0.93725 0.83574 0.88359 Subgenic 0.98007 0.94956 0.96457 Coding 0.94062 0.84230 0.88875 Genic 0.97968 0.94367 0.96134 BP_Extractor for Sequence contig_7090 - ID 134 Forward for Sequence contig_7090 - ID 134 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31864 8 268 0 Non Coding 33543 610 684 635 UTR 65 258 11 13 Phase 0 76 2654 12 0 Coding 203 10 9485 126 Phase 1 71 0 2581 14 Intron 42 0 67 1180 Phase 2 79 13 0 2628 Precision Recall F1 Precision Recall F1 Intergenic 0.99036 0.99141 0.99089 Non Coding 0.99331 0.94562 0.96888 UTR 0.93478 0.74352 0.82825 Phase 0 0.80989 0.96791 0.88187 Coding 0.96481 0.96549 0.96515 Phase 1 0.78761 0.96812 0.86858 Intron 0.89462 0.91544 0.90491 Phase 2 0.80195 0.96618 0.87644 Subgenic 0.95650 0.95969 0.95809 Coding 0.79982 0.96740 0.87566 Genic 0.95598 0.95314 0.95456 Reverse for Sequence contig_7090 - ID 134 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28466 10 7 14 Non Coding 33549 329 355 350 UTR 328 854 24 20 Phase 0 410 2616 0 0 Coding 1505 17 8766 66 Phase 1 404 0 2590 0 Intron 383 2 38 3100 Phase 2 402 0 0 2595 Precision Recall F1 Precision Recall F1 Intergenic 0.92778 0.99891 0.96203 Non Coding 0.96502 0.97010 0.96755 UTR 0.96716 0.69657 0.80986 Phase 0 0.88829 0.86451 0.87624 Coding 0.99219 0.84663 0.91365 Phase 1 0.87946 0.86506 0.87220 Intron 0.96875 0.87993 0.92221 Phase 2 0.88115 0.86587 0.87344 Subgenic 0.98596 0.85508 0.91587 Coding 0.88297 0.86514 0.87396 Genic 0.98467 0.84222 0.90789 BP_Extractor for Sequence contig_7198 - ID 135 Forward for Sequence contig_7198 - ID 135 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4820 0 0 0 Non Coding 4820 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_7198 - ID 135 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4820 0 0 0 Non Coding 4820 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_7301 - ID 136 Forward for Sequence contig_7301 - ID 136 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8389 1 0 8 Non Coding 9562 8 3 4 UTR 9 38 2 7 Phase 0 6 222 0 0 Coding 11 2 685 13 Phase 1 9 0 227 0 Intron 22 0 3 1085 Phase 2 8 0 0 226 Precision Recall F1 Precision Recall F1 Intergenic 0.99502 0.99893 0.99697 Non Coding 0.99760 0.99843 0.99802 UTR 0.92683 0.67857 0.78351 Phase 0 0.96522 0.97368 0.96943 Coding 0.99275 0.96343 0.97787 Phase 1 0.98696 0.96186 0.97425 Intron 0.97484 0.97748 0.97616 Phase 2 0.98261 0.96581 0.97414 Subgenic 0.98170 0.97199 0.97682 Coding 0.97826 0.96705 0.97262 Genic 0.98048 0.96324 0.97178 Reverse for Sequence contig_7301 - ID 136 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10275 0 0 0 Non Coding 10275 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_7302 - ID 137 Forward for Sequence contig_7302 - ID 137 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14985 12 7 418 Non Coding 24254 371 348 349 UTR 22 291 20 19 Phase 0 45 2139 5 0 Coding 81 31 7365 262 Phase 1 52 0 2160 6 Intron 228 35 147 8024 Phase 2 57 3 0 2158 Precision Recall F1 Precision Recall F1 Intergenic 0.97839 0.97166 0.97501 Non Coding 0.99369 0.95782 0.97543 UTR 0.78862 0.82670 0.80721 Phase 0 0.85117 0.97716 0.90983 Coding 0.97692 0.95167 0.96413 Phase 1 0.85953 0.97385 0.91313 Intron 0.91987 0.95139 0.93536 Phase 2 0.85873 0.97295 0.91228 Subgenic 0.94632 0.95152 0.94891 Coding 0.85648 0.97464 0.91175 Genic 0.94282 0.94887 0.94583 Reverse for Sequence contig_7302 - ID 137 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31302 0 0 0 Non Coding 31422 0 0 0 UTR 16 0 0 0 Phase 0 172 0 0 0 Coding 618 0 0 0 Phase 1 185 0 0 0 Intron 11 0 0 0 Phase 2 168 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97981 1.00000 0.98980 Non Coding 0.98357 1.00000 0.99172 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_7351 - ID 138 Forward for Sequence contig_7351 - ID 138 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33517 0 0 0 Non Coding 34570 0 0 0 UTR 240 0 0 0 Phase 0 567 0 0 0 Coding 2099 0 0 0 Phase 1 591 0 0 0 Intron 435 0 0 0 Phase 2 563 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92356 1.00000 0.96026 Non Coding 0.95258 1.00000 0.97571 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_7351 - ID 138 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31185 55 122 11 Non Coding 32747 129 129 134 UTR 210 458 4 2 Phase 0 200 847 0 0 Coding 725 12 2794 60 Phase 1 209 0 847 0 Intron 226 0 8 419 Phase 2 207 0 0 842 Precision Recall F1 Precision Recall F1 Intergenic 0.96411 0.99401 0.97883 Non Coding 0.98154 0.98817 0.98484 UTR 0.87238 0.67953 0.76397 Phase 0 0.86783 0.80898 0.83737 Coding 0.95423 0.77806 0.85719 Phase 1 0.86783 0.80208 0.83366 Intron 0.85163 0.64165 0.73188 Phase 2 0.86270 0.80267 0.83160 Subgenic 0.93947 0.75707 0.83847 Coding 0.86612 0.80457 0.83421 Genic 0.93054 0.74644 0.82839 BP_Extractor for Sequence contig_7377 - ID 139 Forward for Sequence contig_7377 - ID 139 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11815 0 0 0 Non Coding 11814 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99983 1.00000 0.99992 Non Coding 0.99975 1.00000 0.99987 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_7377 - ID 139 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6865 0 0 0 Non Coding 10699 0 0 0 UTR 66 0 0 0 Phase 0 373 0 0 0 Coding 2017 0 0 0 Phase 1 374 0 0 0 Intron 2869 0 0 0 Phase 2 371 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.58094 1.00000 0.73493 Non Coding 0.90539 1.00000 0.95035 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_7498 - ID 140 Forward for Sequence contig_7498 - ID 140 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12933 0 0 9 Non Coding 15518 7 12 8 UTR 37 67 14 8 Phase 0 374 193 0 0 Coding 1298 2 586 5 Phase 1 346 0 188 0 Intron 26 0 0 2239 Phase 2 386 0 0 192 Precision Recall F1 Precision Recall F1 Intergenic 0.90479 0.99930 0.94970 Non Coding 0.93347 0.99826 0.96478 UTR 0.97101 0.53175 0.68718 Phase 0 0.96500 0.34039 0.50326 Coding 0.97667 0.30989 0.47049 Phase 1 0.94000 0.35206 0.51226 Intron 0.99027 0.98852 0.98939 Phase 2 0.96000 0.33218 0.49357 Subgenic 0.98742 0.67974 0.80519 Coding 0.95500 0.34127 0.50285 Genic 0.98703 0.67539 0.80200 Reverse for Sequence contig_7498 - ID 140 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15071 14 0 0 Non Coding 15726 1 1 0 UTR 73 196 1 0 Phase 0 233 262 0 0 Coding 801 0 788 0 Phase 1 244 0 262 0 Intron 280 0 0 0 Phase 2 232 0 0 263 Precision Recall F1 Precision Recall F1 Intergenic 0.92888 0.99907 0.96270 Non Coding 0.95686 0.99987 0.97789 UTR 0.93333 0.72593 0.81667 Phase 0 0.99620 0.52929 0.69129 Coding 0.99873 0.49591 0.66274 Phase 1 0.99620 0.51779 0.68140 Intron NaN 0.00000 0.00000 Phase 2 1.00000 0.53131 0.69393 Subgenic 0.99873 0.42162 0.59293 Coding 0.99747 0.52607 0.68884 Genic 0.98498 0.46003 0.62715 BP_Extractor for Sequence contig_7820 - ID 141 Forward for Sequence contig_7820 - ID 141 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4078 0 0 0 Non Coding 4093 0 0 0 UTR 13 0 0 0 Phase 0 6 0 0 0 Coding 14 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99342 1.00000 0.99670 Non Coding 0.99708 1.00000 0.99854 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_7820 - ID 141 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4071 0 0 0 Non Coding 4099 0 0 0 UTR 19 0 0 0 Phase 0 2 0 0 0 Coding 15 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99172 1.00000 0.99584 Non Coding 0.99854 1.00000 0.99927 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_7833 - ID 142 Forward for Sequence contig_7833 - ID 142 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 66783 62 224 36 Non Coding 72528 556 690 673 UTR 362 323 17 9 Phase 0 826 2326 0 0 Coding 3342 15 8395 119 Phase 1 801 0 2192 0 Intron 2936 5 10 1000 Phase 2 837 0 0 2209 Precision Recall F1 Precision Recall F1 Intergenic 0.90957 0.99520 0.95046 Non Coding 0.96714 0.97422 0.97067 UTR 0.79753 0.45429 0.57885 Phase 0 0.80708 0.73794 0.77096 Coding 0.97097 0.70719 0.81835 Phase 1 0.76058 0.73238 0.74621 Intron 0.85911 0.25310 0.39101 Phase 2 0.76648 0.72521 0.74528 Subgenic 0.95770 0.59379 0.73307 Coding 0.77805 0.73191 0.75427 Genic 0.95135 0.58779 0.72663 Reverse for Sequence contig_7833 - ID 142 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 68277 13 136 0 Non Coding 73067 128 127 127 UTR 727 700 54 6 Phase 0 1295 2086 0 0 Coding 5630 20 6429 38 Phase 1 1313 0 2087 0 Intron 457 21 23 1107 Phase 2 1321 0 0 2087 Precision Recall F1 Precision Recall F1 Intergenic 0.90926 0.99782 0.95148 Non Coding 0.94897 0.99480 0.97135 UTR 0.92838 0.47075 0.62472 Phase 0 0.94219 0.61698 0.74567 Coding 0.96793 0.53058 0.68543 Phase 1 0.94264 0.61382 0.74350 Intron 0.96177 0.68843 0.80246 Phase 2 0.94264 0.61238 0.74244 Subgenic 0.96702 0.54907 0.70044 Coding 0.94249 0.61439 0.74387 Genic 0.96361 0.54141 0.69330 BP_Extractor for Sequence contig_7883 - ID 143 Forward for Sequence contig_7883 - ID 143 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 30903 20 27 48 Non Coding 31990 101 131 108 UTR 59 366 16 3 Phase 0 36 989 17 0 Coding 201 8 3259 18 Phase 1 31 0 958 17 Intron 59 5 16 400 Phase 2 33 16 0 981 Precision Recall F1 Precision Recall F1 Intergenic 0.98978 0.99694 0.99335 Non Coding 0.99688 0.98948 0.99317 UTR 0.91729 0.82432 0.86833 Phase 0 0.89421 0.94914 0.92086 Coding 0.98222 0.93488 0.95797 Phase 1 0.86618 0.95229 0.90720 Intron 0.85288 0.83333 0.84299 Phase 2 0.88698 0.95243 0.91854 Subgenic 0.96620 0.92259 0.94389 Coding 0.88246 0.95127 0.91557 Genic 0.96154 0.91270 0.93648 Reverse for Sequence contig_7883 - ID 143 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23575 14 66 126 Non Coding 26838 359 370 365 UTR 52 756 31 13 Phase 0 64 2435 1 0 Coding 352 51 8224 90 Phase 1 55 0 2424 1 Intron 45 15 64 1934 Phase 2 66 1 0 2429 Precision Recall F1 Precision Recall F1 Intergenic 0.98131 0.99134 0.98630 Non Coding 0.99315 0.96083 0.97673 UTR 0.90431 0.88732 0.89573 Phase 0 0.87120 0.97400 0.91974 Coding 0.98080 0.94344 0.96176 Phase 1 0.86726 0.97742 0.91905 Intron 0.89413 0.93975 0.91637 Phase 2 0.86905 0.97316 0.91816 Subgenic 0.96303 0.94274 0.95277 Coding 0.86917 0.97485 0.91898 Genic 0.95871 0.93868 0.94859 BP_Extractor for Sequence contig_7958 - ID 144 Forward for Sequence contig_7958 - ID 144 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2697 0 0 0 Non Coding 2780 0 0 0 UTR 13 0 0 0 Phase 0 33 0 0 0 Coding 164 0 0 0 Phase 1 36 0 0 0 Intron 15 0 0 0 Phase 2 40 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93354 1.00000 0.96563 Non Coding 0.96227 1.00000 0.98077 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_7958 - ID 144 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2038 0 0 0 Non Coding 2457 1 1 1 UTR 0 83 2 0 Phase 0 0 143 0 0 Coding 0 0 427 0 Phase 1 0 0 143 0 Intron 10 1 3 325 Phase 2 0 0 0 143 Precision Recall F1 Precision Recall F1 Intergenic 0.99512 1.00000 0.99755 Non Coding 1.00000 0.99878 0.99939 UTR 0.98810 0.97647 0.98225 Phase 0 0.99306 1.00000 0.99652 Coding 0.98843 1.00000 0.99418 Phase 1 0.99306 1.00000 0.99652 Intron 1.00000 0.95870 0.97892 Phase 2 0.99306 1.00000 0.99652 Subgenic 0.99339 0.98172 0.98752 Coding 0.99306 1.00000 0.99652 Genic 0.99287 0.98120 0.98700 BP_Extractor for Sequence contig_7965 - ID 145 Forward for Sequence contig_7965 - ID 145 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9750 6 102 5 Non Coding 10368 122 120 114 UTR 37 83 2 7 Phase 0 5 511 0 0 Coding 29 2 1784 6 Phase 1 8 0 513 0 Intron 1 0 11 462 Phase 2 7 0 0 519 Precision Recall F1 Precision Recall F1 Intergenic 0.99318 0.98854 0.99085 Non Coding 0.99807 0.96680 0.98219 UTR 0.91209 0.64341 0.75455 Phase 0 0.80727 0.99031 0.88947 Coding 0.93944 0.97968 0.95914 Phase 1 0.81043 0.98464 0.88908 Intron 0.96250 0.97468 0.96855 Phase 2 0.81991 0.98669 0.89560 Subgenic 0.94409 0.97865 0.96106 Coding 0.81253 0.98720 0.89139 Genic 0.94291 0.96081 0.95178 Reverse for Sequence contig_7965 - ID 145 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5858 34 0 80 Non Coding 10777 21 15 16 UTR 0 523 4 17 Phase 0 18 466 0 0 Coding 0 24 1426 71 Phase 1 18 0 472 0 Intron 1 33 31 4185 Phase 2 13 0 0 471 Precision Recall F1 Precision Recall F1 Intergenic 0.99983 0.98091 0.99028 Non Coding 0.99547 0.99520 0.99534 UTR 0.85179 0.96140 0.90328 Phase 0 0.95688 0.96281 0.95984 Coding 0.97604 0.93754 0.95641 Phase 1 0.96920 0.96327 0.96622 Intron 0.96141 0.98471 0.97292 Phase 2 0.96715 0.97314 0.97013 Subgenic 0.96508 0.97228 0.96867 Coding 0.96441 0.96639 0.96540 Genic 0.95426 0.97134 0.96272 BP_Extractor for Sequence contig_8065 - ID 146 Forward for Sequence contig_8065 - ID 146 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 52799 24 204 69 Non Coding 62043 340 353 347 UTR 263 906 48 9 Phase 0 265 1653 0 2 Coding 1015 13 5644 122 Phase 1 270 2 1640 0 Intron 231 3 89 7389 Phase 2 265 0 2 1646 Precision Recall F1 Precision Recall F1 Intergenic 0.97221 0.99441 0.98318 Non Coding 0.98727 0.98351 0.98539 UTR 0.95772 0.73899 0.83425 Phase 0 0.82857 0.86094 0.84444 Coding 0.94302 0.83073 0.88332 Phase 1 0.82206 0.85774 0.83952 Intron 0.97365 0.95812 0.96582 Phase 2 0.82506 0.86043 0.84237 Subgenic 0.96014 0.89846 0.92828 Coding 0.82523 0.85970 0.84211 Genic 0.95999 0.88603 0.92153 Reverse for Sequence contig_8065 - ID 146 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 62899 0 0 0 Non Coding 65616 0 0 0 UTR 302 0 0 0 Phase 0 1075 0 0 0 Coding 4661 0 0 0 Phase 1 1087 0 0 0 Intron 966 0 0 0 Phase 2 1050 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91386 1.00000 0.95499 Non Coding 0.95333 1.00000 0.97611 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_8145 - ID 147 Forward for Sequence contig_8145 - ID 147 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8660 7 0 0 Non Coding 10921 23 20 19 UTR 4 627 13 0 Phase 0 0 731 0 0 Coding 3 0 2238 0 Phase 1 0 0 734 0 Intron 0 27 11 1593 Phase 2 0 0 0 735 Precision Recall F1 Precision Recall F1 Intergenic 0.99919 0.99919 0.99919 Non Coding 1.00000 0.99435 0.99717 UTR 0.94856 0.97360 0.96092 Phase 0 0.96950 1.00000 0.98451 Coding 0.98939 0.99866 0.99400 Phase 1 0.97347 1.00000 0.98656 Intron 1.00000 0.97670 0.98821 Phase 2 0.97480 1.00000 0.98724 Subgenic 0.99377 0.98941 0.99159 Coding 0.97259 1.00000 0.98610 Genic 0.98716 0.98716 0.98716 Reverse for Sequence contig_8145 - ID 147 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13159 0 0 0 Non Coding 13169 0 0 0 UTR 10 0 0 0 Phase 0 2 0 0 0 Coding 14 0 0 0 Phase 1 6 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99818 1.00000 0.99909 Non Coding 0.99894 1.00000 0.99947 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_8196 - ID 148 Forward for Sequence contig_8196 - ID 148 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10615 0 0 0 Non Coding 10615 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_8196 - ID 148 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10612 0 0 0 Non Coding 10615 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 3 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99972 1.00000 0.99986 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN 0.00000 0.00000 Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_8197 - ID 149 Forward for Sequence contig_8197 - ID 149 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15668 0 0 0 Non Coding 15930 0 0 0 UTR 79 0 0 0 Phase 0 110 0 0 0 Coding 493 0 0 0 Phase 1 135 0 0 0 Intron 62 0 0 0 Phase 2 127 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96111 1.00000 0.98017 Non Coding 0.97718 1.00000 0.98846 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_8197 - ID 149 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15186 0 0 0 Non Coding 15320 0 0 0 UTR 50 0 0 0 Phase 0 329 0 0 0 Coding 1046 0 0 0 Phase 1 326 0 0 0 Intron 20 0 0 0 Phase 2 327 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93154 1.00000 0.96456 Non Coding 0.93976 1.00000 0.96895 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_8220 - ID 150 Forward for Sequence contig_8220 - ID 150 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18437 0 0 0 Non Coding 18437 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_8220 - ID 150 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16754 1 0 0 Non Coding 17296 1 0 0 UTR 6 277 1 0 Phase 0 5 376 0 0 Coding 6 7 1130 0 Phase 1 2 0 377 0 Intron 0 0 0 255 Phase 2 3 0 0 377 Precision Recall F1 Precision Recall F1 Intergenic 0.99928 0.99994 0.99961 Non Coding 0.99942 0.99994 0.99968 UTR 0.97193 0.97535 0.97364 Phase 0 0.99735 0.98688 0.99208 Coding 0.99912 0.98863 0.99384 Phase 1 1.00000 0.99472 0.99735 Intron 1.00000 1.00000 1.00000 Phase 2 1.00000 0.99211 0.99604 Subgenic 0.99928 0.99070 0.99497 Coding 0.99912 0.99123 0.99516 Genic 0.99461 0.98811 0.99135 BP_Extractor for Sequence contig_8301 - ID 151 Forward for Sequence contig_8301 - ID 151 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15542 0 0 0 Non Coding 15542 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_8301 - ID 151 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9919 1 1 19 Non Coding 14141 45 43 54 UTR 0 127 7 26 Phase 0 5 417 0 0 Coding 0 4 1346 60 Phase 1 5 0 418 0 Intron 1 3 32 3996 Phase 2 5 0 1 408 Precision Recall F1 Precision Recall F1 Intergenic 0.99990 0.99789 0.99889 Non Coding 0.99894 0.99006 0.99448 UTR 0.94074 0.79375 0.86102 Phase 0 0.90260 0.98815 0.94344 Coding 0.97114 0.95461 0.96280 Phase 1 0.90476 0.98818 0.94463 Intron 0.97440 0.99107 0.98266 Phase 2 0.88312 0.98551 0.93151 Subgenic 0.97357 0.98162 0.97758 Coding 0.89683 0.98729 0.93989 Genic 0.97279 0.97626 0.97452 BP_Extractor for Sequence contig_8500 - ID 152 Forward for Sequence contig_8500 - ID 152 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34123 0 0 0 Non Coding 35740 0 0 0 UTR 232 0 0 0 Phase 0 254 0 0 0 Coding 956 0 0 0 Phase 1 257 0 0 0 Intron 1184 0 0 0 Phase 2 244 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93500 1.00000 0.96641 Non Coding 0.97931 1.00000 0.98955 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_8500 - ID 152 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22074 4 216 42 Non Coding 26821 210 199 196 UTR 251 474 21 22 Phase 0 1071 1941 0 0 Coding 3754 5 6153 73 Phase 1 1075 0 1952 0 Intron 106 31 63 3206 Phase 2 1075 0 0 1955 Precision Recall F1 Precision Recall F1 Intergenic 0.84300 0.98827 0.90987 Non Coding 0.89278 0.97794 0.93342 UTR 0.92218 0.61719 0.73947 Phase 0 0.90237 0.64442 0.75189 Coding 0.95351 0.61622 0.74863 Phase 1 0.90748 0.64486 0.75396 Intron 0.95902 0.94128 0.95007 Phase 2 0.90888 0.64521 0.75468 Subgenic 0.95539 0.69890 0.80726 Coding 0.90625 0.64483 0.75351 Genic 0.95373 0.69447 0.80371 BP_Extractor for Sequence contig_8567 - ID 153 Forward for Sequence contig_8567 - ID 153 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21245 4 0 0 Non Coding 22441 3 4 5 UTR 35 313 3 0 Phase 0 17 377 0 0 Coding 24 1 1134 31 Phase 1 15 0 376 0 Intron 22 14 3 799 Phase 2 15 0 0 375 Precision Recall F1 Precision Recall F1 Intergenic 0.99620 0.99981 0.99800 Non Coding 0.99791 0.99947 0.99869 UTR 0.94277 0.89174 0.91654 Phase 0 0.99211 0.95685 0.97416 Coding 0.99474 0.95294 0.97339 Phase 1 0.98947 0.96164 0.97536 Intron 0.96265 0.95346 0.95803 Phase 2 0.98684 0.96154 0.97403 Subgenic 0.98122 0.95316 0.96698 Coding 0.98947 0.96000 0.97451 Genic 0.97567 0.94409 0.95962 Reverse for Sequence contig_8567 - ID 153 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16150 3 11 0 Non Coding 20709 52 47 52 UTR 2 132 17 23 Phase 0 28 892 4 0 Coding 3 1 2760 97 Phase 1 19 0 897 4 Intron 2 0 56 4371 Phase 2 28 4 0 892 Precision Recall F1 Precision Recall F1 Intergenic 0.99957 0.99913 0.99935 Non Coding 0.99639 0.99276 0.99457 UTR 0.97059 0.75862 0.85161 Phase 0 0.94093 0.96537 0.95299 Coding 0.97046 0.96470 0.96757 Phase 1 0.94620 0.97500 0.96039 Intron 0.97328 0.98690 0.98004 Phase 2 0.94093 0.96537 0.95299 Subgenic 0.97219 0.97819 0.97518 Coding 0.94269 0.96857 0.95545 Genic 0.97216 0.97307 0.97261 BP_Extractor for Sequence contig_8657 - ID 154 Forward for Sequence contig_8657 - ID 154 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23732 0 0 0 Non Coding 23732 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_8657 - ID 154 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18988 4 7 57 Non Coding 22089 78 87 84 UTR 1 165 3 7 Phase 0 6 465 0 0 Coding 5 3 1615 29 Phase 1 4 0 456 0 Intron 5 5 4 2834 Phase 2 4 0 0 459 Precision Recall F1 Precision Recall F1 Intergenic 0.99942 0.99643 0.99792 Non Coding 0.99937 0.98885 0.99408 UTR 0.93220 0.93750 0.93484 Phase 0 0.85635 0.98726 0.91716 Coding 0.99141 0.97760 0.98446 Phase 1 0.83978 0.99130 0.90927 Intron 0.96823 0.99508 0.98147 Phase 2 0.84530 0.99136 0.91252 Subgenic 0.97651 0.98867 0.98255 Coding 0.84715 0.98996 0.91300 Genic 0.97486 0.98674 0.98076 BP_Extractor for Sequence contig_8696 - ID 155 Forward for Sequence contig_8696 - ID 155 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5725 0 0 0 Non Coding 5743 0 0 0 UTR 6 0 0 0 Phase 0 2 0 0 0 Coding 15 0 0 0 Phase 1 4 0 0 0 Intron 5 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99548 1.00000 0.99773 Non Coding 0.99861 1.00000 0.99930 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_8696 - ID 155 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5751 0 0 0 Non Coding 5751 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_8742 - ID 156 Forward for Sequence contig_8742 - ID 156 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9733 0 0 0 Non Coding 9728 0 0 0 UTR 0 0 0 0 Phase 0 4 0 0 0 Coding 7 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99928 1.00000 0.99964 Non Coding 0.99877 1.00000 0.99938 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_8742 - ID 156 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9739 0 0 0 Non Coding 9739 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99990 1.00000 0.99995 Non Coding 0.99990 1.00000 0.99995 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_8857 - ID 157 Forward for Sequence contig_8857 - ID 157 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8366 0 0 0 Non Coding 8758 0 0 0 UTR 68 0 0 0 Phase 0 139 0 0 0 Coding 428 0 0 0 Phase 1 137 0 0 0 Intron 312 0 0 0 Phase 2 140 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91193 1.00000 0.95393 Non Coding 0.95465 1.00000 0.97680 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_8857 - ID 157 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8028 0 0 0 Non Coding 8440 0 0 0 UTR 189 0 0 0 Phase 0 246 0 0 0 Coding 832 0 0 0 Phase 1 244 0 0 0 Intron 125 0 0 0 Phase 2 244 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.87508 1.00000 0.93338 Non Coding 0.91999 1.00000 0.95833 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_8887 - ID 158 Forward for Sequence contig_8887 - ID 158 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24971 0 0 0 Non Coding 25012 0 0 0 UTR 24 0 0 0 Phase 0 18 0 0 0 Coding 59 0 0 0 Phase 1 12 0 0 0 Intron 5 0 0 0 Phase 2 17 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99649 1.00000 0.99824 Non Coding 0.99812 1.00000 0.99906 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_8887 - ID 158 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23825 11 0 0 Non Coding 24348 6 8 8 UTR 58 316 3 0 Phase 0 2 227 0 0 Coding 8 11 688 5 Phase 1 4 0 225 0 Intron 0 0 8 126 Phase 2 6 0 0 225 Precision Recall F1 Precision Recall F1 Intergenic 0.99724 0.99954 0.99839 Non Coding 0.99951 0.99910 0.99930 UTR 0.93491 0.83820 0.88392 Phase 0 0.97425 0.99127 0.98268 Coding 0.98426 0.96629 0.97519 Phase 1 0.96567 0.98253 0.97403 Intron 0.96183 0.94030 0.95094 Phase 2 0.96567 0.97403 0.96983 Subgenic 0.98072 0.96217 0.97136 Coding 0.96853 0.98258 0.97550 Genic 0.96747 0.92396 0.94521 BP_Extractor for Sequence contig_9095 - ID 159 Forward for Sequence contig_9095 - ID 159 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 114476 42 56 289 Non Coding 139915 504 530 523 UTR 565 2475 82 69 Phase 0 1414 5190 0 1 Coding 5334 57 16787 360 Phase 1 1386 0 5165 1 Intron 1834 26 160 18598 Phase 2 1410 1 0 5170 Precision Recall F1 Precision Recall F1 Intergenic 0.93672 0.99663 0.96575 Non Coding 0.97079 0.98899 0.97981 UTR 0.95192 0.77562 0.85477 Phase 0 0.91133 0.78577 0.84390 Coding 0.98256 0.74483 0.84734 Phase 1 0.90694 0.78831 0.84347 Intron 0.96283 0.90203 0.93144 Phase 2 0.90781 0.78559 0.84229 Subgenic 0.97209 0.81993 0.88955 Coding 0.90869 0.78655 0.84322 Genic 0.97074 0.81688 0.88719 Reverse for Sequence contig_9095 - ID 159 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 130325 71 126 144 Non Coding 146695 435 463 460 UTR 506 1900 145 26 Phase 0 421 3963 16 0 Coding 1406 83 12844 218 Phase 1 426 1 3934 15 Intron 1625 27 127 11637 Phase 2 426 15 1 3939 Precision Recall F1 Precision Recall F1 Intergenic 0.97358 0.99739 0.98534 Non Coding 0.99140 0.99083 0.99111 UTR 0.91302 0.73729 0.81580 Phase 0 0.89783 0.90068 0.89925 Coding 0.96994 0.88269 0.92426 Phase 1 0.89126 0.89899 0.89511 Intron 0.96773 0.86740 0.91482 Phase 2 0.89239 0.89911 0.89574 Subgenic 0.96889 0.87535 0.91975 Coding 0.89382 0.89960 0.89670 Genic 0.96464 0.86370 0.91139 BP_Extractor for Sequence contig_9099 - ID 160 Forward for Sequence contig_9099 - ID 160 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34622 8 26 33 Non Coding 46013 74 77 82 UTR 128 916 18 10 Phase 0 30 1184 0 0 Coding 93 4 3667 30 Phase 1 30 0 1181 0 Intron 260 11 63 9988 Phase 2 30 0 0 1176 Precision Recall F1 Precision Recall F1 Intergenic 0.98630 0.99807 0.99215 Non Coding 0.99805 0.99496 0.99650 UTR 0.97551 0.85448 0.91099 Phase 0 0.94118 0.97529 0.95793 Coding 0.97165 0.96653 0.96908 Phase 1 0.93879 0.97523 0.95666 Intron 0.99274 0.96764 0.98003 Phase 2 0.93482 0.97512 0.95455 Subgenic 0.98699 0.96734 0.97707 Coding 0.93826 0.97521 0.95638 Genic 0.98626 0.95938 0.97263 Reverse for Sequence contig_9099 - ID 160 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 43569 1 0 42 Non Coding 48365 6 10 8 UTR 34 1264 2 6 Phase 0 22 478 0 0 Coding 72 10 1443 5 Phase 1 19 0 474 0 Intron 23 1 7 3398 Phase 2 19 0 0 476 Precision Recall F1 Precision Recall F1 Intergenic 0.99705 0.99901 0.99803 Non Coding 0.99876 0.99950 0.99913 UTR 0.99060 0.96784 0.97909 Phase 0 0.98760 0.95600 0.97154 Coding 0.99380 0.94314 0.96781 Phase 1 0.97934 0.96146 0.97032 Intron 0.98464 0.99096 0.98779 Phase 2 0.98347 0.96162 0.97242 Subgenic 0.98735 0.97620 0.98175 Coding 0.98347 0.95968 0.97143 Genic 0.98802 0.97446 0.98120 BP_Extractor for Sequence contig_9100 - ID 161 Forward for Sequence contig_9100 - ID 161 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 60931 0 0 0 Non Coding 63880 31 34 34 UTR 190 245 15 11 Phase 0 335 604 0 0 Coding 1489 0 1849 3 Phase 1 336 0 601 0 Intron 621 0 41 1403 Phase 2 342 0 0 601 Precision Recall F1 Precision Recall F1 Intergenic 0.96363 1.00000 0.98148 Non Coding 0.98439 0.99845 0.99137 UTR 1.00000 0.53145 0.69405 Phase 0 0.95118 0.64324 0.76747 Coding 0.97060 0.55343 0.70492 Phase 1 0.94646 0.64141 0.76463 Intron 0.99012 0.67942 0.80586 Phase 2 0.94646 0.63733 0.76172 Subgenic 0.97893 0.60155 0.74519 Coding 0.94803 0.64065 0.76461 Genic 0.98038 0.59605 0.74136 Reverse for Sequence contig_9100 - ID 161 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 53696 32 2 14 Non Coding 60838 213 206 215 UTR 88 1145 23 31 Phase 0 40 1735 0 0 Coding 122 14 5768 82 Phase 1 35 0 1742 0 Intron 41 25 51 5664 Phase 2 41 0 0 1733 Precision Recall F1 Precision Recall F1 Intergenic 0.99535 0.99911 0.99722 Non Coding 0.99810 0.98969 0.99387 UTR 0.94161 0.88967 0.91490 Phase 0 0.89066 0.97746 0.93204 Coding 0.98700 0.96358 0.97515 Phase 1 0.89425 0.98030 0.93530 Intron 0.97807 0.97976 0.97891 Phase 2 0.88963 0.97689 0.93122 Subgenic 0.98255 0.97153 0.97701 Coding 0.89151 0.97822 0.93286 Genic 0.97868 0.96346 0.97101 BP_Extractor for Sequence contig_9101 - ID 162 Forward for Sequence contig_9101 - ID 162 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12808 0 0 0 Non Coding 12827 0 0 0 UTR 11 0 0 0 Phase 0 11 0 0 0 Coding 38 0 0 0 Phase 1 12 0 0 0 Intron 3 0 0 0 Phase 2 10 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99596 1.00000 0.99797 Non Coding 0.99743 1.00000 0.99872 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_9101 - ID 162 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12276 0 0 0 Non Coding 12407 0 0 0 UTR 120 0 0 0 Phase 0 149 0 0 0 Coding 460 0 0 0 Phase 1 153 0 0 0 Intron 4 0 0 0 Phase 2 151 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95459 1.00000 0.97677 Non Coding 0.96477 1.00000 0.98207 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9170 - ID 163 Forward for Sequence contig_9170 - ID 163 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18914 4 3 0 Non Coding 20185 32 25 31 UTR 6 156 0 0 Phase 0 6 211 8 0 Coding 18 5 731 0 Phase 1 6 0 216 6 Intron 0 0 13 1100 Phase 2 6 6 0 212 Precision Recall F1 Precision Recall F1 Intergenic 0.99873 0.99963 0.99918 Non Coding 0.99911 0.99566 0.99738 UTR 0.94545 0.96296 0.95413 Phase 0 0.84739 0.93778 0.89030 Coding 0.97858 0.96950 0.97402 Phase 1 0.86747 0.94737 0.90566 Intron 1.00000 0.98832 0.99413 Phase 2 0.85141 0.94643 0.89641 Subgenic 0.99134 0.98072 0.98600 Coding 0.85542 0.94387 0.89747 Genic 0.98757 0.97930 0.98342 Reverse for Sequence contig_9170 - ID 163 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20950 0 0 0 Non Coding 20950 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_9214 - ID 164 Forward for Sequence contig_9214 - ID 164 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3297 3 0 0 Non Coding 3452 1 0 0 UTR 7 125 0 0 Phase 0 0 194 0 0 Coding 0 1 585 0 Phase 1 0 0 195 0 Intron 14 6 0 0 Phase 2 1 0 0 195 Precision Recall F1 Precision Recall F1 Intergenic 0.99367 0.99909 0.99637 Non Coding 0.99971 0.99971 0.99971 UTR 0.92593 0.94697 0.93633 Phase 0 0.99487 1.00000 0.99743 Coding 1.00000 0.99829 0.99915 Phase 1 1.00000 1.00000 1.00000 Intron NaN 0.00000 0.00000 Phase 2 1.00000 0.99490 0.99744 Subgenic 1.00000 0.96535 0.98237 Coding 0.99829 0.99829 0.99829 Genic 0.98611 0.96206 0.97394 Reverse for Sequence contig_9214 - ID 164 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1279 0 0 0 Non Coding 3077 13 13 11 UTR 0 108 6 0 Phase 0 2 303 0 0 Coding 0 0 919 9 Phase 1 6 0 303 0 Intron 0 1 23 1693 Phase 2 5 0 0 305 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99579 0.98812 0.99194 UTR 0.99083 0.94737 0.96861 Phase 0 0.95886 0.99344 0.97585 Coding 0.96941 0.99030 0.97974 Phase 1 0.95886 0.98058 0.96960 Intron 0.99471 0.98602 0.99035 Phase 2 0.96519 0.98387 0.97444 Subgenic 0.98566 0.98752 0.98659 Coding 0.96097 0.98593 0.97329 Genic 0.98586 0.98586 0.98586 BP_Extractor for Sequence contig_9220 - ID 165 Forward for Sequence contig_9220 - ID 165 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34296 0 0 0 Non Coding 34301 0 0 0 UTR 16 0 0 0 Phase 0 18 0 0 0 Coding 34 0 0 0 Phase 1 13 0 0 0 Intron 1 0 0 0 Phase 2 15 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99852 1.00000 0.99926 Non Coding 0.99866 1.00000 0.99933 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_9220 - ID 165 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 30976 0 0 0 Non Coding 32489 0 0 0 UTR 167 0 0 0 Phase 0 621 0 0 0 Coding 2023 0 0 0 Phase 1 618 0 0 0 Intron 1181 0 0 0 Phase 2 619 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90185 1.00000 0.94839 Non Coding 0.94591 1.00000 0.97220 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9221 - ID 166 Forward for Sequence contig_9221 - ID 166 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4399 0 0 0 Non Coding 4398 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99977 1.00000 0.99989 Non Coding 0.99955 1.00000 0.99977 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_9221 - ID 166 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3713 0 0 0 Non Coding 3910 0 0 0 UTR 45 0 0 0 Phase 0 166 0 0 0 Coding 640 0 0 0 Phase 1 163 0 0 0 Intron 2 0 0 0 Phase 2 161 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84386 1.00000 0.91532 Non Coding 0.88864 1.00000 0.94103 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9222 - ID 167 Forward for Sequence contig_9222 - ID 167 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12109 4 405 33 Non Coding 13053 444 454 465 UTR 151 80 25 0 Phase 0 237 454 0 0 Coding 983 2 2258 43 Phase 1 212 0 444 0 Intron 116 0 6 213 Phase 2 232 0 0 433 Precision Recall F1 Precision Recall F1 Intergenic 0.90643 0.96478 0.93470 Non Coding 0.95042 0.90545 0.92739 UTR 0.93023 0.31250 0.46784 Phase 0 0.50557 0.65702 0.57143 Coding 0.83816 0.68716 0.75518 Phase 1 0.49443 0.67683 0.57143 Intron 0.73702 0.63582 0.68269 Phase 2 0.48218 0.65113 0.55406 Subgenic 0.82836 0.68241 0.74833 Coding 0.49406 0.66153 0.56566 Genic 0.83122 0.65798 0.73452 Reverse for Sequence contig_9222 - ID 167 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13749 2 177 36 Non Coding 14178 130 135 134 UTR 50 141 5 0 Phase 0 102 520 0 0 Coding 306 1 1773 9 Phase 1 89 0 518 3 Intron 7 0 4 168 Phase 2 100 3 0 516 Precision Recall F1 Precision Recall F1 Intergenic 0.97428 0.98460 0.97941 Non Coding 0.97989 0.97263 0.97624 UTR 0.97917 0.71939 0.82941 Phase 0 0.79632 0.83601 0.81569 Coding 0.90505 0.84873 0.87599 Phase 1 0.79326 0.84918 0.82027 Intron 0.78873 0.93855 0.85714 Phase 2 0.79020 0.83360 0.81132 Subgenic 0.89365 0.85582 0.87432 Coding 0.79326 0.83955 0.81575 Genic 0.89896 0.84497 0.87113 BP_Extractor for Sequence contig_9223 - ID 168 Forward for Sequence contig_9223 - ID 168 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11716 1 0 0 Non Coding 12146 0 3 3 UTR 51 126 0 0 Phase 0 83 889 0 0 Coding 426 14 2667 0 Phase 1 91 0 886 0 Intron 72 0 0 0 Phase 2 86 0 0 886 Precision Recall F1 Precision Recall F1 Intergenic 0.95524 0.99991 0.97707 Non Coding 0.97904 0.99951 0.98917 UTR 0.89362 0.71186 0.79245 Phase 0 1.00000 0.91461 0.95540 Coding 1.00000 0.85838 0.92380 Phase 1 0.99663 0.90686 0.94962 Intron NaN 0.00000 0.00000 Phase 2 0.99663 0.91152 0.95218 Subgenic 1.00000 0.83894 0.91242 Coding 0.99775 0.91099 0.95240 Genic 0.99466 0.83224 0.90623 Reverse for Sequence contig_9223 - ID 168 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12574 0 0 0 Non Coding 13446 0 0 0 UTR 376 0 0 0 Phase 0 551 0 0 0 Coding 1792 0 0 0 Phase 1 546 0 0 0 Intron 331 0 0 0 Phase 2 530 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.83421 1.00000 0.90961 Non Coding 0.89206 1.00000 0.94295 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9224 - ID 169 Forward for Sequence contig_9224 - ID 169 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4637 0 0 0 Non Coding 4637 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_9224 - ID 169 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3173 0 0 0 Non Coding 3580 0 0 0 UTR 115 0 0 0 Phase 0 348 0 0 0 Coding 1342 0 0 0 Phase 1 360 0 0 0 Intron 7 0 0 0 Phase 2 349 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.68428 1.00000 0.81255 Non Coding 0.77205 1.00000 0.87136 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9281 - ID 170 Forward for Sequence contig_9281 - ID 170 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11301 0 0 0 Non Coding 11309 0 0 0 UTR 6 0 0 0 Phase 0 2 0 0 0 Coding 8 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99876 1.00000 0.99938 Non Coding 0.99947 1.00000 0.99973 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_9281 - ID 170 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11313 0 0 0 Non Coding 11303 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 2 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99982 1.00000 0.99991 Non Coding 0.99894 1.00000 0.99947 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9323 - ID 171 Forward for Sequence contig_9323 - ID 171 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 65798 8 43 0 Non Coding 70538 267 319 311 UTR 519 430 17 0 Phase 0 633 1647 0 0 Coding 2233 17 5581 68 Phase 1 634 0 1595 0 Intron 2109 13 101 1238 Phase 2 628 0 0 1603 Precision Recall F1 Precision Recall F1 Intergenic 0.93120 0.99923 0.96402 Non Coding 0.97384 0.98744 0.98059 UTR 0.91880 0.44513 0.59972 Phase 0 0.86050 0.72237 0.78541 Coding 0.97196 0.70655 0.81827 Phase 1 0.83333 0.71557 0.76997 Intron 0.94793 0.35770 0.51940 Phase 2 0.83751 0.71851 0.77346 Subgenic 0.96751 0.60026 0.74087 Coding 0.84378 0.71884 0.77632 Genic 0.96448 0.58811 0.73067 Reverse for Sequence contig_9323 - ID 171 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 67652 10 310 112 Non Coding 71465 378 364 346 UTR 318 454 19 5 Phase 0 663 1202 29 1 Coding 2535 8 4444 38 Phase 1 609 0 1216 29 Intron 289 1 57 1923 Phase 2 608 30 1 1234 Precision Recall F1 Precision Recall F1 Intergenic 0.95562 0.99365 0.97427 Non Coding 0.97437 0.98500 0.97966 UTR 0.95983 0.57035 0.71552 Phase 0 0.74658 0.63430 0.68588 Coding 0.92008 0.63260 0.74973 Phase 1 0.75528 0.65588 0.70208 Intron 0.92541 0.84714 0.88454 Phase 2 0.76646 0.65884 0.70858 Subgenic 0.92169 0.68499 0.78590 Coding 0.75611 0.64959 0.69881 Genic 0.92413 0.67595 0.78079 BP_Extractor for Sequence contig_9414 - ID 172 Forward for Sequence contig_9414 - ID 172 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34375 4 0 0 Non Coding 38622 48 40 49 UTR 351 897 5 3 Phase 0 3 1627 0 0 Coding 13 3 5003 5 Phase 1 4 0 1635 0 Intron 5 3 17 2971 Phase 2 1 0 0 1626 Precision Recall F1 Precision Recall F1 Intergenic 0.98938 0.99988 0.99460 Non Coding 0.99979 0.99647 0.99813 UTR 0.98897 0.71417 0.82940 Phase 0 0.97134 0.99816 0.98457 Coding 0.99562 0.99582 0.99572 Phase 1 0.97612 0.99756 0.98672 Intron 0.99731 0.99166 0.99448 Phase 2 0.97075 0.99939 0.98486 Subgenic 0.99625 0.99426 0.99526 Coding 0.97274 0.99837 0.98538 Genic 0.99551 0.95634 0.97553 Reverse for Sequence contig_9414 - ID 172 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28951 15 210 316 Non Coding 36730 615 599 594 UTR 187 755 3 9 Phase 0 18 1672 1 0 Coding 174 9 6611 16 Phase 1 20 0 1688 1 Intron 135 11 40 6213 Phase 2 23 1 0 1693 Precision Recall F1 Precision Recall F1 Intergenic 0.98316 0.98166 0.98241 Non Coding 0.99834 0.95309 0.97519 UTR 0.95570 0.79140 0.86583 Phase 0 0.73077 0.98876 0.84041 Coding 0.96314 0.97078 0.96694 Phase 1 0.73776 0.98771 0.84463 Intron 0.94797 0.97093 0.95931 Phase 2 0.73995 0.98602 0.84544 Subgenic 0.95573 0.97085 0.96323 Coding 0.73616 0.98749 0.84350 Genic 0.95573 0.95877 0.95725 BP_Extractor for Sequence contig_9468 - ID 173 Forward for Sequence contig_9468 - ID 173 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7794 3 0 14 Non Coding 17186 158 167 166 UTR 29 341 9 15 Phase 0 37 1432 0 0 Coding 69 6 4652 260 Phase 1 40 0 1423 1 Intron 244 17 109 8515 Phase 2 44 0 0 1423 Precision Recall F1 Precision Recall F1 Intergenic 0.95796 0.99782 0.97749 Non Coding 0.99301 0.97222 0.98251 UTR 0.92916 0.86548 0.89619 Phase 0 0.90063 0.97481 0.93625 Coding 0.97526 0.93283 0.95357 Phase 1 0.89497 0.97199 0.93189 Intron 0.96717 0.95836 0.96275 Phase 2 0.89497 0.97001 0.93098 Subgenic 0.97002 0.94918 0.95948 Coding 0.89686 0.97227 0.93304 Genic 0.96894 0.94687 0.95778 Reverse for Sequence contig_9468 - ID 173 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21515 0 0 0 Non Coding 21888 0 0 0 UTR 51 0 0 0 Phase 0 67 0 0 0 Coding 241 0 0 0 Phase 1 64 0 0 0 Intron 270 0 0 0 Phase 2 58 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97454 1.00000 0.98711 Non Coding 0.99144 1.00000 0.99570 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9484 - ID 174 Forward for Sequence contig_9484 - ID 174 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7153 0 0 0 Non Coding 7153 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_9484 - ID 174 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6125 0 0 0 Non Coding 6759 0 0 0 UTR 46 0 0 0 Phase 0 129 0 0 0 Coding 431 0 0 0 Phase 1 135 0 0 0 Intron 551 0 0 0 Phase 2 130 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85628 1.00000 0.92258 Non Coding 0.94492 1.00000 0.97168 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9579 - ID 175 Forward for Sequence contig_9579 - ID 175 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4916 0 0 0 Non Coding 4916 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_9579 - ID 175 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3589 2 0 0 Non Coding 4292 3 0 1 UTR 5 409 0 0 Phase 0 8 199 0 0 Coding 24 11 605 1 Phase 1 4 0 202 0 Intron 14 1 1 254 Phase 2 6 0 0 201 Precision Recall F1 Precision Recall F1 Intergenic 0.98816 0.99944 0.99377 Non Coding 0.99582 0.99907 0.99744 UTR 0.96690 0.98792 0.97730 Phase 0 0.98515 0.96135 0.97311 Coding 0.99835 0.94384 0.97033 Phase 1 1.00000 0.98058 0.99020 Intron 0.99608 0.94074 0.96762 Phase 2 0.99505 0.97101 0.98289 Subgenic 0.99768 0.94292 0.96953 Coding 0.99340 0.97097 0.98206 Genic 0.98754 0.95698 0.97202 BP_Extractor for Sequence contig_9615 - ID 176 Forward for Sequence contig_9615 - ID 176 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9100 4 128 63 Non Coding 9969 173 182 179 UTR 7 214 19 14 Phase 0 8 1408 0 0 Coding 20 0 4581 104 Phase 1 8 1 1400 0 Intron 12 0 18 455 Phase 2 8 0 0 1403 Precision Recall F1 Precision Recall F1 Intergenic 0.99573 0.97902 0.98731 Non Coding 0.99760 0.94916 0.97278 UTR 0.98165 0.84252 0.90678 Phase 0 0.89001 0.99435 0.93929 Coding 0.96523 0.97365 0.96942 Phase 1 0.88496 0.99361 0.93614 Intron 0.71541 0.93814 0.81178 Phase 2 0.88685 0.99433 0.93752 Subgenic 0.93571 0.97033 0.95271 Coding 0.88727 0.99410 0.93765 Genic 0.93750 0.96436 0.95074 Reverse for Sequence contig_9615 - ID 176 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9720 24 158 50 Non Coding 10891 217 215 223 UTR 24 635 31 22 Phase 0 33 1033 0 3 Coding 49 13 3568 58 Phase 1 27 3 1036 0 Intron 20 5 2 360 Phase 2 29 0 2 1027 Precision Recall F1 Precision Recall F1 Intergenic 0.99052 0.97669 0.98356 Non Coding 0.99189 0.94327 0.96697 UTR 0.93796 0.89185 0.91433 Phase 0 0.82442 0.96632 0.88975 Coding 0.94919 0.96746 0.95824 Phase 1 0.82682 0.97186 0.89349 Intron 0.73469 0.93023 0.82098 Phase 2 0.81963 0.97070 0.88879 Subgenic 0.92445 0.96393 0.94378 Coding 0.82362 0.96962 0.89068 Genic 0.92631 0.95321 0.93957 BP_Extractor for Sequence contig_9712 - ID 177 Forward for Sequence contig_9712 - ID 177 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14316 7 404 105 Non Coding 23193 538 476 543 UTR 61 205 11 24 Phase 0 28 1312 0 1 Coding 150 1 5134 56 Phase 1 27 1 1375 0 Intron 14 12 7 8326 Phase 2 29 1 1 1308 Precision Recall F1 Precision Recall F1 Intergenic 0.98453 0.96521 0.97477 Non Coding 0.99639 0.93709 0.96583 UTR 0.91111 0.68106 0.77947 Phase 0 0.70842 0.97837 0.82180 Coding 0.92405 0.96124 0.94228 Phase 1 0.74244 0.98004 0.84485 Intron 0.97826 0.99605 0.98708 Phase 2 0.70626 0.97685 0.81981 Subgenic 0.95685 0.98248 0.96950 Coding 0.71904 0.97845 0.82892 Genic 0.95613 0.97600 0.96596 Reverse for Sequence contig_9712 - ID 177 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27886 0 0 0 Non Coding 27984 0 0 0 UTR 74 0 0 0 Phase 0 282 0 0 0 Coding 869 0 0 0 Phase 1 284 0 0 0 Intron 4 0 0 0 Phase 2 283 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96716 1.00000 0.98330 Non Coding 0.97055 1.00000 0.98506 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_9718 - ID 178 Forward for Sequence contig_9718 - ID 178 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 29188 2 17 265 Non Coding 31182 37 37 39 UTR 11 329 12 7 Phase 0 8 336 4 0 Coding 19 18 1071 30 Phase 1 5 0 336 4 Intron 26 14 31 1295 Phase 2 9 4 0 334 Precision Recall F1 Precision Recall F1 Intergenic 0.99809 0.99036 0.99421 Non Coding 0.99929 0.99639 0.99784 UTR 0.90634 0.91643 0.91136 Phase 0 0.89125 0.96552 0.92690 Coding 0.94695 0.94112 0.94403 Phase 1 0.89125 0.97391 0.93075 Intron 0.81090 0.94802 0.87411 Phase 2 0.88594 0.96254 0.92265 Subgenic 0.86730 0.94489 0.90443 Coding 0.88948 0.96731 0.92676 Genic 0.87189 0.94132 0.90527 Reverse for Sequence contig_9718 - ID 178 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15465 10 44 16 Non Coding 23883 290 257 259 UTR 54 978 25 9 Phase 0 28 2500 0 0 Coding 302 4 8253 82 Phase 1 27 0 2533 0 Intron 176 35 48 6834 Phase 2 27 0 0 2531 Precision Recall F1 Precision Recall F1 Intergenic 0.96674 0.99549 0.98091 Non Coding 0.99658 0.96735 0.98175 UTR 0.95229 0.91745 0.93454 Phase 0 0.89606 0.98892 0.94020 Coding 0.98602 0.95510 0.97031 Phase 1 0.90789 0.98945 0.94692 Intron 0.98458 0.96349 0.97392 Phase 2 0.90717 0.98944 0.94652 Subgenic 0.98537 0.95888 0.97194 Coding 0.90370 0.98928 0.94456 Genic 0.98329 0.95625 0.96958 BP_Extractor for Sequence contig_9946 - ID 179 Forward for Sequence contig_9946 - ID 179 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3754 0 0 0 Non Coding 3754 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_9946 - ID 179 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2953 0 0 0 Non Coding 3290 0 0 0 UTR 51 0 0 0 Phase 0 156 0 0 0 Coding 710 0 0 0 Phase 1 159 0 0 0 Intron 40 0 0 0 Phase 2 149 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.78663 1.00000 0.88057 Non Coding 0.87640 1.00000 0.93413 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_10054 - ID 180 Forward for Sequence contig_10054 - ID 180 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10884 0 0 0 Non Coding 10884 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_10054 - ID 180 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4952 50 69 133 Non Coding 7140 148 155 161 UTR 34 144 9 0 Phase 0 11 1089 0 0 Coding 82 8 3606 34 Phase 1 10 0 1082 0 Intron 2 0 27 1734 Phase 2 12 0 0 1076 Precision Recall F1 Precision Recall F1 Intergenic 0.97673 0.95158 0.96399 Non Coding 0.99540 0.93898 0.96637 UTR 0.71287 0.77005 0.74036 Phase 0 0.88036 0.99000 0.93196 Coding 0.97171 0.96676 0.96922 Phase 1 0.87470 0.99084 0.92915 Intron 0.91215 0.98355 0.94651 Phase 2 0.86985 0.98897 0.92559 Subgenic 0.95153 0.97215 0.96173 Coding 0.87497 0.98994 0.92891 Genic 0.94324 0.96549 0.95424 BP_Extractor for Sequence contig_10106 - ID 181 Forward for Sequence contig_10106 - ID 181 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8338 0 0 0 Non Coding 8338 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_10106 - ID 181 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6689 0 0 0 Non Coding 8010 0 0 0 UTR 89 0 0 0 Phase 0 113 0 0 0 Coding 558 0 0 0 Phase 1 109 0 0 0 Intron 1002 0 0 0 Phase 2 106 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.80223 1.00000 0.89026 Non Coding 0.96066 1.00000 0.97994 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_10107 - ID 182 Forward for Sequence contig_10107 - ID 182 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22645 17 0 0 Non Coding 24508 6 6 6 UTR 76 183 8 0 Phase 0 329 322 0 0 Coding 1067 0 976 0 Phase 1 330 0 322 0 Intron 1509 0 0 0 Phase 2 330 0 0 322 Precision Recall F1 Precision Recall F1 Intergenic 0.89517 0.99925 0.94435 Non Coding 0.96121 0.99927 0.97987 UTR 0.91500 0.68539 0.78373 Phase 0 0.98171 0.49462 0.65781 Coding 0.99187 0.47773 0.64486 Phase 1 0.98171 0.49387 0.65714 Intron NaN 0.00000 0.00000 Phase 2 0.98171 0.49387 0.65714 Subgenic 0.99187 0.27477 0.43034 Coding 0.98171 0.49412 0.65737 Genic 0.97889 0.30348 0.46332 Reverse for Sequence contig_10107 - ID 182 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26165 0 0 0 Non Coding 26318 0 0 0 UTR 42 0 0 0 Phase 0 56 0 0 0 Coding 258 0 0 0 Phase 1 57 0 0 0 Intron 16 0 0 0 Phase 2 50 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98807 1.00000 0.99400 Non Coding 0.99384 1.00000 0.99691 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_10120 - ID 183 Forward for Sequence contig_10120 - ID 183 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4256 0 0 0 Non Coding 4323 0 0 0 UTR 1 0 0 0 Phase 0 7 0 0 0 Coding 55 0 0 0 Phase 1 6 0 0 0 Intron 30 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98019 1.00000 0.99000 Non Coding 0.99562 1.00000 0.99781 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_10120 - ID 183 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4342 0 0 0 Non Coding 4342 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_10132 - ID 184 Forward for Sequence contig_10132 - ID 184 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18064 0 0 0 Non Coding 18080 0 0 0 UTR 13 0 0 0 Phase 0 3 0 0 0 Coding 12 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99862 1.00000 0.99931 Non Coding 0.99950 1.00000 0.99975 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_10132 - ID 184 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11842 0 0 0 Non Coding 13621 0 0 0 UTR 138 0 0 0 Phase 0 1492 0 0 0 Coding 5701 0 0 0 Phase 1 1478 0 0 0 Intron 408 0 0 0 Phase 2 1498 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.65465 1.00000 0.79129 Non Coding 0.75300 1.00000 0.85910 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_10335 - ID 185 Forward for Sequence contig_10335 - ID 185 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 42608 7 0 37 Non Coding 44717 6 3 4 UTR 34 633 3 0 Phase 0 20 460 0 0 Coding 55 1 1390 20 Phase 1 18 0 463 0 Intron 13 22 5 1349 Phase 2 24 0 0 462 Precision Recall F1 Precision Recall F1 Intergenic 0.99761 0.99897 0.99829 Non Coding 0.99862 0.99971 0.99916 UTR 0.95475 0.94478 0.94974 Phase 0 0.98712 0.95833 0.97252 Coding 0.99428 0.94816 0.97067 Phase 1 0.99356 0.96258 0.97782 Intron 0.95946 0.97120 0.96530 Phase 2 0.99142 0.95062 0.97059 Subgenic 0.97682 0.95937 0.96802 Coding 0.99070 0.95715 0.97364 Genic 0.97260 0.95660 0.96453 Reverse for Sequence contig_10335 - ID 185 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 39710 36 271 19 Non Coding 42575 283 303 302 UTR 72 574 6 4 Phase 0 39 883 0 0 Coding 192 2 3192 19 Phase 1 30 0 863 0 Intron 112 1 29 1938 Phase 2 35 0 0 864 Precision Recall F1 Precision Recall F1 Intergenic 0.99062 0.99186 0.99124 Non Coding 0.99756 0.97957 0.98848 UTR 0.93638 0.87500 0.90465 Phase 0 0.75729 0.95770 0.84579 Coding 0.91252 0.93744 0.92482 Phase 1 0.74014 0.96641 0.83827 Intron 0.97879 0.93173 0.95468 Phase 2 0.74099 0.96107 0.83680 Subgenic 0.93647 0.93528 0.93588 Coding 0.74614 0.96168 0.84031 Genic 0.93646 0.92884 0.93264 BP_Extractor for Sequence contig_10348 - ID 186 Forward for Sequence contig_10348 - ID 186 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28785 0 0 0 Non Coding 28797 0 0 0 UTR 4 0 0 0 Phase 0 2 0 0 0 Coding 14 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99938 1.00000 0.99969 Non Coding 0.99979 1.00000 0.99990 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_10348 - ID 186 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13607 11 75 239 Non Coding 21247 333 328 315 UTR 11 945 15 46 Phase 0 31 2145 0 5 Coding 73 10 7243 134 Phase 1 39 5 2150 0 Intron 610 4 116 5664 Phase 2 37 0 5 2163 Precision Recall F1 Precision Recall F1 Intergenic 0.95147 0.97667 0.96391 Non Coding 0.99499 0.95608 0.97515 UTR 0.97423 0.92920 0.95118 Phase 0 0.86387 0.98349 0.91981 Coding 0.97235 0.97091 0.97163 Phase 1 0.86589 0.97995 0.91939 Intron 0.93112 0.88583 0.90791 Phase 2 0.87112 0.98095 0.92278 Subgenic 0.95381 0.93164 0.94260 Coding 0.86696 0.98146 0.92066 Genic 0.95518 0.93148 0.94318 BP_Extractor for Sequence contig_10355 - ID 187 Forward for Sequence contig_10355 - ID 187 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4575 1 0 160 Non Coding 7061 21 16 18 UTR 9 559 22 10 Phase 0 11 951 0 9 Coding 0 1 2893 44 Phase 1 14 7 955 0 Intron 20 1 22 1718 Phase 2 12 0 8 952 Precision Recall F1 Precision Recall F1 Intergenic 0.99370 0.96601 0.97966 Non Coding 0.99479 0.99227 0.99353 UTR 0.99466 0.93167 0.96213 Phase 0 0.97140 0.97940 0.97538 Coding 0.98502 0.98468 0.98485 Phase 1 0.97549 0.97848 0.97698 Intron 0.88923 0.97558 0.93041 Phase 2 0.97242 0.97942 0.97591 Subgenic 0.94701 0.98127 0.96384 Coding 0.97310 0.97910 0.97609 Genic 0.95194 0.97566 0.96365 Reverse for Sequence contig_10355 - ID 187 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8471 0 0 0 Non Coding 8655 2 2 1 UTR 1 122 3 6 Phase 0 1 457 0 0 Coding 0 0 1372 3 Phase 1 0 0 457 0 Intron 0 0 2 55 Phase 2 2 0 0 458 Precision Recall F1 Precision Recall F1 Intergenic 0.99988 1.00000 0.99994 Non Coding 0.99965 0.99942 0.99954 UTR 1.00000 0.92424 0.96063 Phase 0 0.99564 0.99782 0.99673 Coding 0.99637 0.99782 0.99709 Phase 1 0.99564 1.00000 0.99782 Intron 0.85938 0.96491 0.90909 Phase 2 0.99782 0.99565 0.99674 Subgenic 0.99028 0.99651 0.99339 Coding 0.99637 0.99782 0.99709 Genic 0.99104 0.99041 0.99073 BP_Extractor for Sequence contig_10467 - ID 188 Forward for Sequence contig_10467 - ID 188 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12474 0 0 0 Non Coding 12473 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99992 1.00000 0.99996 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN Reverse for Sequence contig_10467 - ID 188 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11225 0 0 0 Non Coding 11474 14 16 17 UTR 77 55 7 0 Phase 0 173 143 0 0 Coding 581 0 459 1 Phase 1 181 0 141 0 Intron 8 0 5 56 Phase 2 175 0 0 140 Precision Recall F1 Precision Recall F1 Intergenic 0.94399 1.00000 0.97119 Non Coding 0.95593 0.99592 0.97551 UTR 1.00000 0.39568 0.56701 Phase 0 0.91083 0.45253 0.60465 Coding 0.97452 0.44092 0.60714 Phase 1 0.89809 0.43789 0.58873 Intron 0.98246 0.81159 0.88889 Phase 2 0.89172 0.44444 0.59322 Subgenic 0.97538 0.46396 0.62882 Coding 0.90021 0.44491 0.59551 Genic 0.97770 0.45637 0.62227 BP_Extractor for Sequence contig_10506 - ID 189 Forward for Sequence contig_10506 - ID 189 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24266 16 0 0 Non Coding 25878 13 12 13 UTR 52 291 2 0 Phase 0 17 103 0 0 Coding 108 0 336 14 Phase 1 19 0 104 0 Intron 1000 0 10 182 Phase 2 15 0 0 103 Precision Recall F1 Precision Recall F1 Intergenic 0.95438 0.99934 0.97634 Non Coding 0.99803 0.99853 0.99828 UTR 0.94788 0.84348 0.89264 Phase 0 0.88793 0.85833 0.87288 Coding 0.96552 0.73362 0.83375 Phase 1 0.89655 0.84553 0.87029 Intron 0.92857 0.15268 0.26225 Phase 2 0.88793 0.87288 0.88034 Subgenic 0.95221 0.31394 0.47220 Coding 0.89080 0.85873 0.87447 Genic 0.95065 0.40551 0.56852 Reverse for Sequence contig_10506 - ID 189 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19120 4 142 4 Non Coding 20545 382 413 357 UTR 27 227 2 3 Phase 0 57 1472 1 0 Coding 238 2 5377 130 Phase 1 49 0 1441 0 Intron 82 1 44 874 Phase 2 61 1 0 1498 Precision Recall F1 Precision Recall F1 Intergenic 0.98217 0.99222 0.98717 Non Coding 0.99194 0.94691 0.96890 UTR 0.97009 0.87645 0.92089 Phase 0 0.79353 0.96209 0.86972 Coding 0.96622 0.93562 0.95067 Phase 1 0.77682 0.96711 0.86158 Intron 0.86449 0.87313 0.86879 Phase 2 0.80755 0.96026 0.87731 Subgenic 0.95058 0.92635 0.93831 Coding 0.79263 0.96310 0.86959 Genic 0.95125 0.92450 0.93769 BP_Extractor for Sequence contig_10512 - ID 190 Forward for Sequence contig_10512 - ID 190 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8416 8 0 22 Non Coding 13710 10 21 19 UTR 10 179 1 6 Phase 0 3 304 0 0 Coding 2 0 925 9 Phase 1 4 0 293 0 Intron 7 7 16 5054 Phase 2 3 0 0 295 Precision Recall F1 Precision Recall F1 Intergenic 0.99775 0.99645 0.99710 Non Coding 0.99927 0.99637 0.99782 UTR 0.92268 0.91327 0.91795 Phase 0 0.96815 0.99023 0.97907 Coding 0.98195 0.98825 0.98509 Phase 1 0.93312 0.98653 0.95908 Intron 0.99273 0.99410 0.99342 Phase 2 0.93949 0.98993 0.96405 Subgenic 0.99105 0.99319 0.99212 Coding 0.94692 0.98891 0.96746 Genic 0.98892 0.99067 0.98979 Reverse for Sequence contig_10512 - ID 190 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14662 0 0 0 Non Coding 14662 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_10564 - ID 191 Forward for Sequence contig_10564 - ID 191 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12028 1 6 41 Non Coding 16776 19 17 18 UTR 7 38 7 7 Phase 0 1 200 0 1 Coding 6 1 631 8 Phase 1 1 0 201 0 Intron 1720 0 13 2922 Phase 2 1 0 1 200 Precision Recall F1 Precision Recall F1 Intergenic 0.87406 0.99603 0.93107 Non Coding 0.99982 0.99679 0.99830 UTR 0.95000 0.64407 0.76768 Phase 0 0.91324 0.99010 0.95012 Coding 0.96043 0.97678 0.96853 Phase 1 0.91781 0.99505 0.95487 Intron 0.98120 0.62771 0.76562 Phase 2 0.91324 0.99010 0.95012 Subgenic 0.97744 0.67025 0.79521 Coding 0.91476 0.99175 0.95170 Genic 0.97714 0.66996 0.79491 Reverse for Sequence contig_10564 - ID 191 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17416 0 0 0 Non Coding 17420 0 0 0 UTR 5 0 0 0 Phase 0 6 0 0 0 Coding 15 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99885 1.00000 0.99943 Non Coding 0.99908 1.00000 0.99954 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_10565 - ID 192 Forward for Sequence contig_10565 - ID 192 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 35892 0 8 0 Non Coding 38047 163 148 156 UTR 10 163 11 2 Phase 0 7 245 0 0 Coding 16 0 1201 19 Phase 1 9 0 260 0 Intron 2 1 4 1966 Phase 2 8 0 0 252 Precision Recall F1 Precision Recall F1 Intergenic 0.99922 0.99978 0.99950 Non Coding 0.99937 0.98787 0.99359 UTR 0.99390 0.87634 0.93143 Phase 0 0.60049 0.97222 0.74242 Coding 0.98121 0.97168 0.97642 Phase 1 0.63725 0.96654 0.76809 Intron 0.98943 0.99645 0.99293 Phase 2 0.61765 0.96923 0.75449 Subgenic 0.98630 0.98691 0.98660 Coding 0.61846 0.96927 0.75511 Genic 0.98667 0.98085 0.98375 Reverse for Sequence contig_10565 - ID 192 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 29878 20 0 0 Non Coding 35485 90 102 91 UTR 7 748 20 0 Phase 0 4 1177 0 0 Coding 0 2 3745 42 Phase 1 2 0 1165 0 Intron 0 0 36 4797 Phase 2 3 0 0 1176 Precision Recall F1 Precision Recall F1 Intergenic 0.99977 0.99933 0.99955 Non Coding 0.99975 0.99209 0.99590 UTR 0.97143 0.96516 0.96828 Phase 0 0.92897 0.99661 0.96160 Coding 0.98527 0.98839 0.98682 Phase 1 0.91949 0.99829 0.95727 Intron 0.99132 0.99255 0.99194 Phase 2 0.92818 0.99746 0.96157 Subgenic 0.98866 0.99072 0.98969 Coding 0.92555 0.99745 0.96015 Genic 0.98725 0.98861 0.98793 BP_Extractor for Sequence contig_10628 - ID 193 Forward for Sequence contig_10628 - ID 193 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10198 0 0 0 Non Coding 10266 0 0 0 UTR 66 0 0 0 Phase 0 155 0 0 0 Coding 465 0 0 0 Phase 1 154 0 0 0 Intron 0 0 0 0 Phase 2 154 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95051 1.00000 0.97463 Non Coding 0.95685 1.00000 0.97795 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_10628 - ID 193 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10729 0 0 0 Non Coding 10729 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_10643 - ID 194 Forward for Sequence contig_10643 - ID 194 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12850 3 0 0 Non Coding 14819 7 7 7 UTR 3 129 16 0 Phase 0 4 121 0 0 Coding 10 0 366 0 Phase 1 4 0 121 0 Intron 0 19 2 1817 Phase 2 4 0 0 121 Precision Recall F1 Precision Recall F1 Intergenic 0.99899 0.99977 0.99938 Non Coding 0.99919 0.99858 0.99889 UTR 0.85430 0.87162 0.86288 Phase 0 0.94531 0.96800 0.95652 Coding 0.95312 0.97340 0.96316 Phase 1 0.94531 0.96800 0.95652 Intron 1.00000 0.98857 0.99425 Phase 2 0.94531 0.96800 0.95652 Subgenic 0.99182 0.98600 0.98890 Coding 0.94531 0.96800 0.95652 Genic 0.98299 0.97883 0.98091 Reverse for Sequence contig_10643 - ID 194 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15139 0 0 0 Non Coding 15092 0 0 0 UTR 9 0 0 0 Phase 0 45 0 0 0 Coding 62 0 0 0 Phase 1 44 0 0 0 Intron 5 0 0 0 Phase 2 34 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99500 1.00000 0.99750 Non Coding 0.99192 1.00000 0.99594 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_10847 - ID 195 Forward for Sequence contig_10847 - ID 195 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4886 0 0 0 Non Coding 4886 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_10847 - ID 195 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4692 0 0 0 Non Coding 4749 0 0 0 UTR 18 0 0 0 Phase 0 53 0 0 0 Coding 171 0 0 0 Phase 1 40 0 0 0 Intron 5 0 0 0 Phase 2 44 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96029 1.00000 0.97975 Non Coding 0.97196 1.00000 0.98578 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_10872 - ID 196 Forward for Sequence contig_10872 - ID 196 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 39134 0 1 0 Non Coding 39301 5 4 7 UTR 2 41 3 5 Phase 0 7 189 0 0 Coding 15 0 572 4 Phase 1 8 0 190 0 Intron 0 14 6 107 Phase 2 6 0 0 187 Precision Recall F1 Precision Recall F1 Intergenic 0.99957 0.99997 0.99977 Non Coding 0.99947 0.99959 0.99953 UTR 0.74545 0.80392 0.77358 Phase 0 0.97423 0.96429 0.96923 Coding 0.98282 0.96785 0.97528 Phase 1 0.97938 0.95960 0.96939 Intron 0.92241 0.84252 0.88066 Phase 2 0.96392 0.96891 0.96641 Subgenic 0.97278 0.94568 0.95904 Coding 0.97251 0.96422 0.96835 Genic 0.95618 0.93628 0.94612 Reverse for Sequence contig_10872 - ID 196 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23794 5 94 125 Non Coding 35000 327 320 324 UTR 71 366 45 32 Phase 0 44 1262 0 0 Coding 345 5 4594 74 Phase 1 47 0 1269 0 Intron 1121 21 34 9178 Phase 2 46 0 0 1265 Precision Recall F1 Precision Recall F1 Intergenic 0.93932 0.99067 0.96432 Non Coding 0.99610 0.97301 0.98442 UTR 0.92191 0.71206 0.80351 Phase 0 0.79421 0.96631 0.87185 Coding 0.96371 0.91550 0.93899 Phase 1 0.79862 0.96429 0.87367 Intron 0.97545 0.88642 0.92881 Phase 2 0.79610 0.96491 0.87241 Subgenic 0.97150 0.89591 0.93218 Coding 0.79631 0.96517 0.87264 Genic 0.97015 0.88997 0.92833 BP_Extractor for Sequence contig_10945 - ID 197 Forward for Sequence contig_10945 - ID 197 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 37241 1 0 0 Non Coding 37300 1 0 1 UTR 24 47 2 0 Phase 0 73 145 0 0 Coding 154 19 436 0 Phase 1 57 0 146 0 Intron 10 0 0 0 Phase 2 66 0 0 145 Precision Recall F1 Precision Recall F1 Intergenic 0.99498 0.99997 0.99747 Non Coding 0.99477 0.99995 0.99735 UTR 0.70149 0.64384 0.67143 Phase 0 0.99315 0.66514 0.79670 Coding 0.99543 0.71593 0.83286 Phase 1 1.00000 0.71921 0.83668 Intron NaN 0.00000 0.00000 Phase 2 0.99315 0.68720 0.81232 Subgenic 0.99543 0.70436 0.82498 Coding 0.99543 0.68987 0.81495 Genic 0.95644 0.69798 0.80702 Reverse for Sequence contig_10945 - ID 197 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22317 23 34 22 Non Coding 32879 475 452 488 UTR 74 707 19 38 Phase 0 30 1170 2 1 Coding 93 9 4779 47 Phase 1 42 2 1193 2 Intron 25 40 112 9595 Phase 2 39 1 1 1157 Precision Recall F1 Precision Recall F1 Intergenic 0.99147 0.99647 0.99397 Non Coding 0.99664 0.95874 0.97732 UTR 0.90757 0.84368 0.87446 Phase 0 0.70995 0.97257 0.82076 Coding 0.96663 0.96976 0.96819 Phase 1 0.72391 0.96287 0.82646 Intron 0.98897 0.98189 0.98542 Phase 2 0.70206 0.96578 0.81307 Subgenic 0.98143 0.97782 0.97962 Coding 0.71197 0.96703 0.82013 Genic 0.97770 0.97059 0.97413 BP_Extractor for Sequence contig_11026 - ID 198 Forward for Sequence contig_11026 - ID 198 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 39985 1 0 0 Non Coding 41321 137 157 158 UTR 191 424 24 0 Phase 0 467 791 0 21 Coding 1675 3 2795 21 Phase 1 454 20 771 0 Intron 44 1 25 359 Phase 2 462 0 20 769 Precision Recall F1 Precision Recall F1 Intergenic 0.95441 0.99997 0.97666 Non Coding 0.96761 0.98918 0.97828 UTR 0.98834 0.66354 0.79401 Phase 0 0.83439 0.61845 0.71037 Coding 0.98277 0.62194 0.76179 Phase 1 0.81329 0.61928 0.70315 Intron 0.94474 0.83683 0.88752 Phase 2 0.81118 0.61471 0.69941 Subgenic 0.97829 0.64067 0.77427 Coding 0.81962 0.61748 0.70434 Genic 0.97947 0.64329 0.77656 Reverse for Sequence contig_11026 - ID 198 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 29517 5 77 248 Non Coding 35186 294 293 284 UTR 185 381 20 32 Phase 0 1534 1655 8 2 Coding 5603 28 5713 112 Phase 1 1445 1 1659 12 Intron 596 9 76 2946 Phase 2 1497 12 2 1664 Precision Recall F1 Precision Recall F1 Intergenic 0.82218 0.98894 0.89788 Non Coding 0.88715 0.97584 0.92938 UTR 0.90071 0.61650 0.73199 Phase 0 0.84353 0.51735 0.64135 Coding 0.97061 0.49869 0.65886 Phase 1 0.84557 0.53224 0.65328 Intron 0.88256 0.81224 0.84594 Phase 2 0.84811 0.52409 0.64785 Subgenic 0.93875 0.57409 0.71247 Coding 0.84574 0.52450 0.64746 Genic 0.93708 0.57576 0.71327 BP_Extractor for Sequence contig_11064 - ID 199 Forward for Sequence contig_11064 - ID 199 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 38963 11 324 26 Non Coding 44259 863 856 863 UTR 315 712 17 5 Phase 0 176 1871 2 5 Coding 696 13 7751 101 Phase 1 166 4 1875 2 Intron 88 4 125 3848 Phase 2 181 1 6 1869 Precision Recall F1 Precision Recall F1 Intergenic 0.97257 0.99082 0.98161 Non Coding 0.98832 0.94488 0.96611 UTR 0.96216 0.67874 0.79598 Phase 0 0.68310 0.91091 0.78072 Coding 0.94329 0.90538 0.92395 Phase 1 0.68456 0.91597 0.78354 Intron 0.96683 0.94662 0.95662 Phase 2 0.68237 0.90860 0.77940 Subgenic 0.95097 0.91866 0.93454 Coding 0.68334 0.91182 0.78122 Genic 0.95161 0.90026 0.92522 Reverse for Sequence contig_11064 - ID 199 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 42786 12 463 142 Non Coding 45311 780 808 771 UTR 221 382 33 11 Phase 0 438 1336 10 0 Coding 1725 11 5820 146 Phase 1 440 0 1308 10 Intron 272 9 62 904 Phase 2 432 10 0 1345 Precision Recall F1 Precision Recall F1 Intergenic 0.95072 0.98578 0.96793 Non Coding 0.97190 0.95051 0.96109 UTR 0.92271 0.59042 0.72008 Phase 0 0.62841 0.74888 0.68338 Coding 0.91251 0.75565 0.82670 Phase 1 0.61524 0.74403 0.67353 Intron 0.75145 0.72494 0.73796 Phase 2 0.63264 0.75266 0.68745 Subgenic 0.88695 0.75137 0.81355 Coding 0.62543 0.74855 0.68147 Genic 0.88881 0.74052 0.80791 BP_Extractor for Sequence contig_11223 - ID 200 Forward for Sequence contig_11223 - ID 200 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17899 5 0 6 Non Coding 19249 8 6 10 UTR 4 871 1 11 Phase 0 4 1132 0 0 Coding 2 2 3397 5 Phase 1 5 0 1134 0 Intron 0 14 22 445 Phase 2 6 0 0 1130 Precision Recall F1 Precision Recall F1 Intergenic 0.99966 0.99939 0.99953 Non Coding 0.99922 0.99875 0.99899 UTR 0.97646 0.98196 0.97920 Phase 0 0.99298 0.99648 0.99473 Coding 0.99327 0.99736 0.99531 Phase 1 0.99474 0.99561 0.99517 Intron 0.95289 0.92516 0.93882 Phase 2 0.99123 0.99472 0.99297 Subgenic 0.98842 0.98842 0.98842 Coding 0.99298 0.99560 0.99429 Genic 0.98619 0.98722 0.98671 Reverse for Sequence contig_11223 - ID 200 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19930 6 0 0 Non Coding 21469 112 100 116 UTR 18 221 9 7 Phase 0 9 283 0 0 Coding 20 0 1151 58 Phase 1 11 0 295 0 Intron 15 0 25 1224 Phase 2 10 0 0 279 Precision Recall F1 Precision Recall F1 Intergenic 0.99735 0.99970 0.99852 Non Coding 0.99860 0.98495 0.99173 UTR 0.97357 0.86667 0.91701 Phase 0 0.71646 0.96918 0.82387 Coding 0.97131 0.93653 0.95360 Phase 1 0.74684 0.96405 0.84165 Intron 0.94957 0.96835 0.95887 Phase 2 0.70633 0.96540 0.81579 Subgenic 0.95998 0.95267 0.95631 Coding 0.72321 0.96618 0.82722 Genic 0.96113 0.94469 0.95284 BP_Extractor for Sequence contig_11245 - ID 201 Forward for Sequence contig_11245 - ID 201 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3606 0 0 0 Non Coding 3606 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_11245 - ID 201 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3318 0 0 0 Non Coding 3357 0 0 0 UTR 10 0 0 0 Phase 0 72 0 0 0 Coding 272 0 0 0 Phase 1 92 0 0 0 Intron 6 0 0 0 Phase 2 85 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92013 1.00000 0.95841 Non Coding 0.93095 1.00000 0.96424 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_11248 - ID 202 Forward for Sequence contig_11248 - ID 202 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19494 7 40 75 Non Coding 33934 463 464 547 UTR 103 471 13 49 Phase 0 174 1306 1 0 Coding 527 2 5143 256 Phase 1 159 0 1305 0 Intron 51 22 114 13398 Phase 2 188 1 0 1223 Precision Recall F1 Precision Recall F1 Intergenic 0.96625 0.99378 0.97982 Non Coding 0.98488 0.95837 0.97144 UTR 0.93825 0.74057 0.82777 Phase 0 0.73785 0.88184 0.80345 Coding 0.96855 0.86758 0.91529 Phase 1 0.73729 0.89139 0.80705 Intron 0.97242 0.98623 0.97928 Phase 2 0.69096 0.86615 0.76870 Subgenic 0.97134 0.95019 0.96065 Coding 0.72203 0.87996 0.79321 Genic 0.97050 0.94357 0.95684 Reverse for Sequence contig_11248 - ID 202 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 36668 6 3 24 Non Coding 37603 60 63 67 UTR 176 242 25 0 Phase 0 46 614 0 0 Coding 363 22 1983 43 Phase 1 52 0 611 0 Intron 68 0 11 131 Phase 2 42 0 0 607 Precision Recall F1 Precision Recall F1 Intergenic 0.98372 0.99910 0.99135 Non Coding 0.99629 0.99497 0.99563 UTR 0.89630 0.54628 0.67882 Phase 0 0.91098 0.93030 0.92054 Coding 0.98071 0.82248 0.89465 Phase 1 0.90653 0.92157 0.91399 Intron 0.66162 0.62381 0.64216 Phase 2 0.90059 0.93529 0.91761 Subgenic 0.95225 0.80656 0.87337 Coding 0.90603 0.92901 0.91738 Genic 0.94618 0.76893 0.84840 BP_Extractor for Sequence contig_11267 - ID 203 Forward for Sequence contig_11267 - ID 203 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5827 0 0 0 Non Coding 5827 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_11267 - ID 203 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5791 0 0 0 Non Coding 5798 0 0 0 UTR 5 0 0 0 Phase 0 9 0 0 0 Coding 31 0 0 0 Phase 1 8 0 0 0 Intron 0 0 0 0 Phase 2 12 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99382 1.00000 0.99690 Non Coding 0.99502 1.00000 0.99751 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_11272 - ID 204 Forward for Sequence contig_11272 - ID 204 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12273 21 0 0 Non Coding 12976 9 12 9 UTR 78 173 4 0 Phase 0 20 438 0 0 Coding 63 8 1337 16 Phase 1 23 0 435 0 Intron 83 0 0 321 Phase 2 17 0 0 438 Precision Recall F1 Precision Recall F1 Intergenic 0.98208 0.99829 0.99012 Non Coding 0.99540 0.99769 0.99654 UTR 0.85644 0.67843 0.75711 Phase 0 0.97987 0.95633 0.96796 Coding 0.99702 0.93890 0.96709 Phase 1 0.97315 0.94978 0.96133 Intron 0.95252 0.79455 0.86640 Phase 2 0.97987 0.96264 0.97118 Subgenic 0.98808 0.90700 0.94581 Coding 0.97763 0.95624 0.96681 Genic 0.97394 0.87902 0.92405 Reverse for Sequence contig_11272 - ID 204 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11846 0 0 0 Non Coding 12624 2 2 3 UTR 51 60 7 2 Phase 0 166 419 0 0 Coding 706 3 1255 7 Phase 1 160 0 419 0 Intron 163 0 1 276 Phase 2 164 0 0 418 Precision Recall F1 Precision Recall F1 Intergenic 0.92793 1.00000 0.96262 Non Coding 0.96264 0.99945 0.98070 UTR 0.95238 0.50000 0.65574 Phase 0 0.99525 0.71624 0.83300 Coding 0.99367 0.63673 0.77613 Phase 1 0.99525 0.72366 0.83800 Intron 0.96842 0.62727 0.76138 Phase 2 0.99287 0.71821 0.83350 Subgenic 0.98902 0.63501 0.77343 Coding 0.99446 0.71936 0.83483 Genic 0.98759 0.62861 0.76823 BP_Extractor for Sequence contig_11289 - ID 205 Forward for Sequence contig_11289 - ID 205 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5514 5 3 0 Non Coding 7567 33 31 37 UTR 44 41 12 14 Phase 0 11 626 0 0 Coding 47 0 1959 5 Phase 1 8 0 628 0 Intron 304 1 3 1623 Phase 2 12 0 0 622 Precision Recall F1 Precision Recall F1 Intergenic 0.93315 0.99855 0.96474 Non Coding 0.99592 0.98683 0.99135 UTR 0.87234 0.36937 0.51899 Phase 0 0.94992 0.98273 0.96605 Coding 0.99090 0.97414 0.98245 Phase 1 0.95296 0.98742 0.96988 Intron 0.98843 0.84050 0.90848 Phase 2 0.94385 0.98107 0.96210 Subgenic 0.98978 0.90868 0.94749 Coding 0.94891 0.98374 0.96601 Genic 0.98827 0.89391 0.93872 Reverse for Sequence contig_11289 - ID 205 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9575 0 0 0 Non Coding 9575 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_11295 - ID 206 Forward for Sequence contig_11295 - ID 206 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12803 0 0 0 Non Coding 12805 0 0 0 UTR 10 0 0 0 Phase 0 10 0 0 0 Coding 18 0 0 0 Phase 1 9 0 0 0 Intron 0 0 0 0 Phase 2 7 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99782 1.00000 0.99891 Non Coding 0.99797 1.00000 0.99899 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_11295 - ID 206 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10552 0 0 0 Non Coding 12090 0 0 0 UTR 51 0 0 0 Phase 0 260 0 0 0 Coding 1510 0 0 0 Phase 1 246 0 0 0 Intron 718 0 0 0 Phase 2 235 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.82238 1.00000 0.90254 Non Coding 0.94225 1.00000 0.97027 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_11368 - ID 207 Forward for Sequence contig_11368 - ID 207 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27811 9 120 0 Non Coding 29788 65 63 66 UTR 14 263 43 8 Phase 0 21 764 0 0 Coding 45 4 2319 9 Phase 1 25 0 766 0 Intron 19 0 5 1677 Phase 2 25 0 0 763 Precision Recall F1 Precision Recall F1 Intergenic 0.99720 0.99538 0.99629 Non Coding 0.99762 0.99353 0.99557 UTR 0.95290 0.80183 0.87086 Phase 0 0.92159 0.97325 0.94672 Coding 0.93245 0.97560 0.95354 Phase 1 0.92400 0.96839 0.94568 Intron 0.98996 0.98589 0.98792 Phase 2 0.92039 0.96827 0.94372 Subgenic 0.95575 0.97989 0.96767 Coding 0.92199 0.96997 0.94537 Genic 0.95558 0.96664 0.96107 Reverse for Sequence contig_11368 - ID 207 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26222 28 65 430 Non Coding 29163 125 142 157 UTR 52 332 9 5 Phase 0 47 885 0 0 Coding 316 6 2939 27 Phase 1 47 0 868 1 Intron 132 0 18 1765 Phase 2 58 1 0 852 Precision Recall F1 Precision Recall F1 Intergenic 0.98129 0.98044 0.98087 Non Coding 0.99481 0.98567 0.99022 UTR 0.90710 0.83417 0.86911 Phase 0 0.87537 0.94957 0.91096 Coding 0.96965 0.89386 0.93021 Phase 1 0.85941 0.94760 0.90135 Intron 0.79255 0.92167 0.85225 Phase 2 0.84356 0.93524 0.88704 Subgenic 0.89464 0.90409 0.89934 Coding 0.85945 0.94418 0.89983 Genic 0.89545 0.89913 0.89728 BP_Extractor for Sequence contig_11496 - ID 208 Forward for Sequence contig_11496 - ID 208 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14893 0 0 0 Non Coding 14893 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_11496 - ID 208 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13853 0 0 0 Non Coding 14583 0 0 0 UTR 86 0 0 0 Phase 0 100 0 0 0 Coding 478 0 0 0 Phase 1 108 0 0 0 Intron 476 0 0 0 Phase 2 102 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93017 1.00000 0.96382 Non Coding 0.97918 1.00000 0.98948 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_11645 - ID 209 Forward for Sequence contig_11645 - ID 209 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3940 0 0 0 Non Coding 3964 0 0 0 UTR 20 0 0 0 Phase 0 79 0 0 0 Coding 240 0 0 0 Phase 1 79 0 0 0 Intron 1 0 0 0 Phase 2 79 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93787 1.00000 0.96794 Non Coding 0.94358 1.00000 0.97097 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_11645 - ID 209 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4200 0 0 0 Non Coding 4200 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99976 1.00000 0.99988 Non Coding 0.99976 1.00000 0.99988 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_11772 - ID 210 Forward for Sequence contig_11772 - ID 210 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 37114 9 65 51 Non Coding 37888 70 68 68 UTR 13 123 6 11 Phase 0 3 513 0 1 Coding 4 14 1673 14 Phase 1 5 0 515 0 Intron 60 8 5 478 Phase 2 3 0 0 514 Precision Recall F1 Precision Recall F1 Intergenic 0.99793 0.99664 0.99729 Non Coding 0.99971 0.99459 0.99714 UTR 0.79870 0.80392 0.80130 Phase 0 0.87993 0.99226 0.93273 Coding 0.95655 0.98123 0.96873 Phase 1 0.88336 0.99038 0.93382 Intron 0.86282 0.86751 0.86516 Phase 2 0.88165 0.99420 0.93455 Subgenic 0.93400 0.95346 0.94363 Coding 0.88165 0.99228 0.93370 Genic 0.92552 0.94396 0.93465 Reverse for Sequence contig_11772 - ID 210 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27983 9 208 32 Non Coding 33829 294 306 319 UTR 45 477 28 35 Phase 0 45 1599 0 4 Coding 260 8 5360 101 Phase 1 45 3 1587 0 Intron 747 23 92 4240 Phase 2 41 0 3 1573 Precision Recall F1 Precision Recall F1 Intergenic 0.96377 0.99118 0.97728 Non Coding 0.99614 0.97355 0.98472 UTR 0.92263 0.81538 0.86570 Phase 0 0.84335 0.97027 0.90237 Coding 0.94233 0.93559 0.93895 Phase 1 0.83703 0.97064 0.89890 Intron 0.96189 0.83105 0.89169 Phase 2 0.82964 0.97279 0.89553 Subgenic 0.95087 0.88634 0.91748 Coding 0.83667 0.97122 0.89894 Genic 0.94950 0.88271 0.91488 BP_Extractor for Sequence contig_11795 - ID 211 Forward for Sequence contig_11795 - ID 211 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8531 0 0 0 Non Coding 8531 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_11795 - ID 211 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8531 0 0 0 Non Coding 8531 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_11802 - ID 212 Forward for Sequence contig_11802 - ID 212 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 40400 44 150 49 Non Coding 44590 118 124 126 UTR 110 842 26 17 Phase 0 44 2539 2 2 Coding 244 48 7757 98 Phase 1 44 2 2532 2 Intron 13 24 50 2839 Phase 2 50 2 3 2531 Precision Recall F1 Precision Recall F1 Intergenic 0.99100 0.99402 0.99251 Non Coding 0.99691 0.99181 0.99436 UTR 0.87891 0.84623 0.86226 Phase 0 0.95415 0.98145 0.96761 Coding 0.97169 0.95213 0.96181 Phase 1 0.95152 0.98140 0.96623 Intron 0.94539 0.97027 0.95767 Phase 2 0.95115 0.97873 0.96474 Subgenic 0.96450 0.95692 0.96070 Coding 0.95227 0.98052 0.96619 Genic 0.95764 0.94780 0.95269 Reverse for Sequence contig_11802 - ID 212 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 38763 56 261 225 Non Coding 42264 346 341 376 UTR 198 733 20 6 Phase 0 774 2365 0 2 Coding 2367 8 7832 138 Phase 1 774 2 2370 0 Intron 93 1 26 1984 Phase 2 760 0 2 2335 Precision Recall F1 Precision Recall F1 Intergenic 0.93583 0.98621 0.96036 Non Coding 0.94822 0.97547 0.96165 UTR 0.91855 0.76594 0.83533 Phase 0 0.87173 0.75294 0.80799 Coding 0.96228 0.75708 0.84744 Phase 1 0.87357 0.75334 0.80901 Intron 0.84318 0.94297 0.89028 Phase 2 0.86067 0.75396 0.80379 Subgenic 0.93557 0.78850 0.85576 Coding 0.86866 0.75341 0.80694 Genic 0.93437 0.78689 0.85431 BP_Extractor for Sequence contig_11841 - ID 213 Forward for Sequence contig_11841 - ID 213 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 55865 8 1 13 Non Coding 55984 26 44 36 UTR 186 51 0 0 Phase 0 368 256 0 1 Coding 945 3 848 19 Phase 1 496 1 238 0 Intron 128 0 0 22 Phase 2 392 0 1 246 Precision Recall F1 Precision Recall F1 Intergenic 0.97796 0.99961 0.98866 Non Coding 0.97806 0.99811 0.98798 UTR 0.82258 0.21519 0.34114 Phase 0 0.90459 0.40960 0.56388 Coding 0.99882 0.46722 0.63664 Phase 1 0.84099 0.32381 0.46758 Intron 0.40741 0.14667 0.21569 Phase 2 0.86926 0.38498 0.53362 Subgenic 0.96346 0.44275 0.60669 Coding 0.87161 0.37019 0.51966 Genic 0.95440 0.41826 0.58162 Reverse for Sequence contig_11841 - ID 213 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 46559 7 217 66 Non Coding 49596 223 218 247 UTR 385 426 15 28 Phase 0 896 1693 0 0 Coding 3747 7 5514 114 Phase 1 949 0 1698 0 Intron 502 3 2 497 Phase 2 900 0 0 1669 Precision Recall F1 Precision Recall F1 Intergenic 0.90948 0.99381 0.94978 Non Coding 0.94756 0.98632 0.96655 UTR 0.96163 0.49883 0.65690 Phase 0 0.88361 0.65392 0.75161 Coding 0.95929 0.58772 0.72888 Phase 1 0.88622 0.64148 0.74425 Intron 0.70496 0.49502 0.58163 Phase 2 0.87109 0.64967 0.74426 Subgenic 0.93150 0.57876 0.71394 Coding 0.88031 0.64830 0.74670 Genic 0.93344 0.57269 0.70986 BP_Extractor for Sequence contig_12002 - ID 214 Forward for Sequence contig_12002 - ID 214 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3786 2 0 0 Non Coding 4543 15 15 15 UTR 4 322 36 0 Phase 0 1 1110 0 0 Coding 0 1 3339 0 Phase 1 1 0 1110 0 Intron 0 0 0 431 Phase 2 1 0 0 1110 Precision Recall F1 Precision Recall F1 Intergenic 0.99894 0.99947 0.99921 Non Coding 0.99934 0.99019 0.99474 UTR 0.99077 0.88950 0.93741 Phase 0 0.98667 0.99910 0.99284 Coding 0.98933 0.99970 0.99449 Phase 1 0.98667 0.99910 0.99284 Intron 1.00000 1.00000 1.00000 Phase 2 0.98667 0.99910 0.99284 Subgenic 0.99054 0.99973 0.99512 Coding 0.98667 0.99910 0.99284 Genic 0.99056 0.99008 0.99032 Reverse for Sequence contig_12002 - ID 214 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6618 4 0 0 Non Coding 7096 12 12 13 UTR 21 148 13 0 Phase 0 2 262 0 0 Coding 13 0 804 0 Phase 1 0 0 262 0 Intron 288 7 5 0 Phase 2 1 0 0 261 Precision Recall F1 Precision Recall F1 Intergenic 0.95360 0.99940 0.97596 Non Coding 0.99958 0.99481 0.99719 UTR 0.93082 0.81319 0.86804 Phase 0 0.95620 0.99242 0.97398 Coding 0.97810 0.98409 0.98109 Phase 1 0.95620 1.00000 0.97761 Intron NaN 0.00000 0.00000 Phase 2 0.95255 0.99618 0.97388 Subgenic 0.97810 0.71979 0.82929 Coding 0.95499 0.99619 0.97516 Genic 0.97044 0.73287 0.83509 BP_Extractor for Sequence contig_12058 - ID 215 Forward for Sequence contig_12058 - ID 215 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 58078 26 194 87 Non Coding 61125 726 770 744 UTR 159 570 25 27 Phase 0 214 3482 5 0 Coding 1171 11 12361 134 Phase 1 177 0 3438 6 Intron 310 4 59 1130 Phase 2 191 5 0 3463 Precision Recall F1 Precision Recall F1 Intergenic 0.97254 0.99474 0.98351 Non Coding 0.99057 0.96465 0.97744 UTR 0.93290 0.72983 0.81897 Phase 0 0.82649 0.94083 0.87996 Coding 0.97800 0.90378 0.93943 Phase 1 0.81605 0.94946 0.87771 Intron 0.82003 0.75183 0.78445 Phase 2 0.82198 0.94643 0.87983 Subgenic 0.96247 0.88874 0.92414 Coding 0.82150 0.94554 0.87917 Genic 0.96124 0.88096 0.91935 Reverse for Sequence contig_12058 - ID 215 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 42830 35 368 189 Non Coding 53587 977 1088 1072 UTR 178 1097 44 84 Phase 0 352 5590 1 4 Coding 1107 44 19183 347 Phase 1 335 8 5479 0 Intron 237 13 128 8462 Phase 2 349 0 6 5498 Precision Recall F1 Precision Recall F1 Intergenic 0.96568 0.98637 0.97592 Non Coding 0.98103 0.94470 0.96252 UTR 0.92262 0.78190 0.84645 Phase 0 0.85019 0.93997 0.89283 Coding 0.97262 0.92757 0.94956 Phase 1 0.83343 0.94109 0.88399 Intron 0.93173 0.95724 0.94431 Phase 2 0.83632 0.93935 0.88485 Subgenic 0.95973 0.93645 0.94795 Coding 0.83998 0.94013 0.88724 Genic 0.95826 0.92944 0.94363 BP_Extractor for Sequence contig_12091 - ID 216 Forward for Sequence contig_12091 - ID 216 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 75124 8 456 1 Non Coding 79473 521 528 528 UTR 235 713 31 17 Phase 0 484 1803 0 0 Coding 2453 16 6439 29 Phase 1 530 1 1796 0 Intron 854 9 49 1567 Phase 2 539 0 1 1797 Precision Recall F1 Precision Recall F1 Intergenic 0.95497 0.99385 0.97402 Non Coding 0.98083 0.98054 0.98069 UTR 0.95576 0.71586 0.81860 Phase 0 0.77548 0.78837 0.78187 Coding 0.92315 0.72049 0.80933 Phase 1 0.77247 0.77181 0.77214 Intron 0.97088 0.63211 0.76570 Phase 2 0.77290 0.76893 0.77091 Subgenic 0.93212 0.70130 0.80040 Coding 0.77362 0.77629 0.77495 Genic 0.93401 0.70247 0.80186 Reverse for Sequence contig_12091 - ID 216 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 72198 35 76 57 Non Coding 77317 235 242 266 UTR 85 1681 37 9 Phase 0 242 3072 4 1 Coding 924 15 9783 157 Phase 1 255 2 3067 6 Intron 307 3 46 2588 Phase 2 245 5 1 3041 Precision Recall F1 Precision Recall F1 Intergenic 0.98210 0.99768 0.98983 Non Coding 0.99049 0.99048 0.99049 UTR 0.96943 0.92770 0.94811 Phase 0 0.92698 0.92558 0.92628 Coding 0.98401 0.89926 0.93972 Phase 1 0.92547 0.92102 0.92324 Intron 0.92067 0.87908 0.89939 Phase 2 0.91762 0.92375 0.92068 Subgenic 0.97005 0.89496 0.93099 Coding 0.92336 0.92345 0.92340 Genic 0.96997 0.89875 0.93301 BP_Extractor for Sequence contig_12153 - ID 217 Forward for Sequence contig_12153 - ID 217 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 83387 44 307 192 Non Coding 87741 596 625 579 UTR 334 1128 35 35 Phase 0 632 3777 1 0 Coding 1993 40 12729 105 Phase 1 632 0 3748 1 Intron 161 15 51 2179 Phase 2 608 1 0 3794 Precision Recall F1 Precision Recall F1 Intergenic 0.97103 0.99353 0.98215 Non Coding 0.97911 0.97990 0.97950 UTR 0.91932 0.73629 0.81769 Phase 0 0.86351 0.85646 0.85997 Coding 0.97005 0.85619 0.90957 Phase 1 0.85688 0.85551 0.85620 Intron 0.86778 0.90565 0.88631 Phase 2 0.86740 0.86169 0.86453 Subgenic 0.95362 0.86308 0.90610 Coding 0.86260 0.85789 0.86024 Genic 0.95113 0.85275 0.89926 Reverse for Sequence contig_12153 - ID 217 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 69740 96 799 291 Non Coding 78804 1671 1729 1713 UTR 381 1501 251 43 Phase 0 354 5947 1 0 Coding 1336 21 21557 223 Phase 1 361 0 5889 1 Intron 91 49 250 6106 Phase 2 359 1 0 5905 Precision Recall F1 Precision Recall F1 Intergenic 0.97473 0.98328 0.97899 Non Coding 0.98655 0.93907 0.96223 UTR 0.90042 0.68980 0.78116 Phase 0 0.78055 0.94367 0.85439 Coding 0.94312 0.93171 0.93738 Phase 1 0.77294 0.94209 0.84917 Intron 0.91640 0.93996 0.92803 Phase 2 0.77504 0.94254 0.85062 Subgenic 0.93709 0.93352 0.93530 Coding 0.77617 0.94277 0.85140 Genic 0.93513 0.91685 0.92590 BP_Extractor for Sequence contig_12235 - ID 218 Forward for Sequence contig_12235 - ID 218 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11326 5 0 17 Non Coding 12220 34 38 35 UTR 132 110 1 0 Phase 0 77 697 6 0 Coding 418 7 2204 85 Phase 1 81 0 694 7 Intron 3 0 9 353 Phase 2 78 7 0 696 Precision Recall F1 Precision Recall F1 Intergenic 0.95345 0.99806 0.97524 Non Coding 0.98105 0.99132 0.98616 UTR 0.90164 0.45267 0.60274 Phase 0 0.94444 0.89359 0.91831 Coding 0.99548 0.81209 0.89448 Phase 1 0.94038 0.88747 0.91316 Intron 0.77582 0.96712 0.86098 Phase 2 0.94309 0.89117 0.91639 Subgenic 0.95804 0.83046 0.88970 Coding 0.94264 0.89074 0.91595 Genic 0.95557 0.80283 0.87257 Reverse for Sequence contig_12235 - ID 218 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10973 0 0 0 Non Coding 12679 0 0 0 UTR 89 0 0 0 Phase 0 648 0 0 0 Coding 3394 0 0 0 Phase 1 661 0 0 0 Intron 214 0 0 0 Phase 2 682 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.74799 1.00000 0.85583 Non Coding 0.86428 1.00000 0.92720 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_12244 - ID 219 Forward for Sequence contig_12244 - ID 219 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18953 1 0 8 Non Coding 20137 1 1 0 UTR 69 161 1 3 Phase 0 319 201 0 0 Coding 1277 0 605 0 Phase 1 338 0 201 0 Intron 405 3 0 216 Phase 2 302 0 0 202 Precision Recall F1 Precision Recall F1 Intergenic 0.91543 0.99953 0.95563 Non Coding 0.95454 0.99990 0.97669 UTR 0.97576 0.68803 0.80702 Phase 0 0.99505 0.38654 0.55679 Coding 0.99835 0.32147 0.48633 Phase 1 0.99505 0.37291 0.54251 Intron 0.95154 0.34615 0.50764 Phase 2 1.00000 0.40079 0.57224 Subgenic 0.98559 0.32761 0.49176 Coding 0.99670 0.38644 0.55694 Genic 0.98397 0.35839 0.52541 Reverse for Sequence contig_12244 - ID 219 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14421 48 43 33 Non Coding 17432 135 148 145 UTR 66 817 30 16 Phase 0 47 1243 1 0 Coding 198 5 4023 136 Phase 1 48 0 1229 0 Intron 700 4 38 1124 Phase 2 41 0 0 1233 Precision Recall F1 Precision Recall F1 Intergenic 0.93734 0.99147 0.96365 Non Coding 0.99226 0.97604 0.98408 UTR 0.93478 0.87944 0.90627 Phase 0 0.90203 0.96282 0.93143 Coding 0.97315 0.92228 0.94703 Phase 1 0.89187 0.96241 0.92580 Intron 0.85867 0.60236 0.70803 Phase 2 0.89478 0.96782 0.92986 Subgenic 0.94562 0.82643 0.88202 Coding 0.89623 0.96434 0.92904 Genic 0.94412 0.83331 0.88526 BP_Extractor for Sequence contig_12265 - ID 220 Forward for Sequence contig_12265 - ID 220 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9808 1 0 0 Non Coding 10998 29 28 28 UTR 56 14 8 13 Phase 0 12 1255 0 0 Coding 36 16 3823 30 Phase 1 15 0 1256 0 Intron 18 1 21 1047 Phase 2 15 0 0 1256 Precision Recall F1 Precision Recall F1 Intergenic 0.98891 0.99990 0.99437 Non Coding 0.99620 0.99233 0.99426 UTR 0.43750 0.15385 0.22764 Phase 0 0.97741 0.99053 0.98393 Coding 0.99247 0.97900 0.98569 Phase 1 0.97819 0.98820 0.98317 Intron 0.96055 0.96320 0.96187 Phase 2 0.97819 0.98820 0.98317 Subgenic 0.98543 0.97556 0.98047 Coding 0.97793 0.98897 0.98342 Genic 0.98191 0.96085 0.97126 Reverse for Sequence contig_12265 - ID 220 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10730 8 0 33 Non Coding 12611 115 103 120 UTR 31 5 7 23 Phase 0 19 623 0 0 Coding 57 3 2182 80 Phase 1 25 1 635 0 Intron 45 4 28 1656 Phase 2 20 0 1 619 Precision Recall F1 Precision Recall F1 Intergenic 0.98776 0.99619 0.99196 Non Coding 0.99495 0.97390 0.98431 UTR 0.25000 0.07576 0.11628 Phase 0 0.84303 0.97040 0.90224 Coding 0.98421 0.93971 0.96145 Phase 1 0.85927 0.96067 0.90714 Intron 0.92411 0.95557 0.93957 Phase 2 0.83762 0.96719 0.89775 Subgenic 0.95735 0.94649 0.95188 Coding 0.84664 0.96603 0.90240 Genic 0.95383 0.93254 0.94307 BP_Extractor for Sequence contig_12276 - ID 221 Forward for Sequence contig_12276 - ID 221 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11837 2 0 23 Non Coding 12610 8 16 11 UTR 89 37 5 18 Phase 0 7 171 0 0 Coding 25 1 532 27 Phase 1 3 0 163 0 Intron 19 0 0 546 Phase 2 4 0 0 168 Precision Recall F1 Precision Recall F1 Intergenic 0.98889 0.99789 0.99337 Non Coding 0.99889 0.99723 0.99806 UTR 0.92500 0.24832 0.39153 Phase 0 0.95531 0.96067 0.95798 Coding 0.99069 0.90940 0.94831 Phase 1 0.91061 0.98193 0.94493 Intron 0.88925 0.96637 0.92621 Phase 2 0.93855 0.97674 0.95726 Subgenic 0.93658 0.93739 0.93698 Coding 0.93482 0.97287 0.95347 Genic 0.93619 0.85835 0.89558 Reverse for Sequence contig_12276 - ID 221 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13161 0 0 0 Non Coding 13161 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_12278 - ID 222 Forward for Sequence contig_12278 - ID 222 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33426 0 0 14 Non Coding 36393 16 19 17 UTR 33 227 1 5 Phase 0 31 220 0 0 Coding 318 0 704 90 Phase 1 25 0 217 0 Intron 31 1 3 2334 Phase 2 30 0 0 219 Precision Recall F1 Precision Recall F1 Intergenic 0.98870 0.99958 0.99411 Non Coding 0.99764 0.99857 0.99811 UTR 0.99561 0.85338 0.91903 Phase 0 0.93220 0.87649 0.90349 Coding 0.99435 0.63309 0.77363 Phase 1 0.91949 0.89669 0.90795 Intron 0.95538 0.98523 0.97007 Phase 2 0.92797 0.87952 0.90309 Subgenic 0.96414 0.87274 0.91616 Coding 0.92655 0.88410 0.90483 Genic 0.96626 0.87136 0.91636 Reverse for Sequence contig_12278 - ID 222 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31678 0 0 0 Non Coding 35876 11 8 10 UTR 28 100 3 4 Phase 0 27 399 1 0 Coding 116 0 1210 21 Phase 1 24 0 401 0 Intron 10 3 17 3997 Phase 2 30 0 0 400 Precision Recall F1 Precision Recall F1 Intergenic 0.99516 1.00000 0.99758 Non Coding 0.99775 0.99919 0.99847 UTR 0.97087 0.74074 0.84034 Phase 0 0.97317 0.93443 0.95341 Coding 0.98374 0.89829 0.93908 Phase 1 0.97805 0.94353 0.96048 Intron 0.99378 0.99255 0.99317 Phase 2 0.97561 0.93023 0.95238 Subgenic 0.99143 0.96892 0.98005 Coding 0.97561 0.93604 0.95541 Genic 0.99104 0.96333 0.97699 BP_Extractor for Sequence contig_12310 - ID 223 Forward for Sequence contig_12310 - ID 223 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12894 6 83 0 Non Coding 14976 246 255 253 UTR 53 173 7 10 Phase 0 35 416 0 0 Coding 163 4 1865 11 Phase 1 54 0 407 0 Intron 73 9 31 1707 Phase 2 38 0 0 409 Precision Recall F1 Precision Recall F1 Intergenic 0.97808 0.99314 0.98555 Non Coding 0.99159 0.95207 0.97143 UTR 0.90104 0.71193 0.79540 Phase 0 0.62840 0.92239 0.74753 Coding 0.93907 0.91287 0.92579 Phase 1 0.61480 0.88286 0.72484 Intron 0.98785 0.93791 0.96223 Phase 2 0.61782 0.91499 0.73760 Subgenic 0.96177 0.92467 0.94285 Coding 0.62034 0.90655 0.73662 Genic 0.95878 0.91208 0.93485 Reverse for Sequence contig_12310 - ID 223 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15319 2 0 0 Non Coding 16302 3 4 6 UTR 8 174 2 0 Phase 0 4 255 0 0 Coding 9 2 772 2 Phase 1 4 0 254 0 Intron 0 0 0 799 Phase 2 5 0 0 252 Precision Recall F1 Precision Recall F1 Intergenic 0.99889 0.99987 0.99938 Non Coding 0.99920 0.99920 0.99920 UTR 0.97753 0.94565 0.96133 Phase 0 0.98837 0.98456 0.98646 Coding 0.99742 0.98344 0.99038 Phase 1 0.98450 0.98450 0.98450 Intron 0.99750 1.00000 0.99875 Phase 2 0.97674 0.98054 0.97864 Subgenic 0.99746 0.99179 0.99462 Coding 0.98320 0.98320 0.98320 Genic 0.99544 0.98699 0.99120 BP_Extractor for Sequence contig_12334 - ID 224 Forward for Sequence contig_12334 - ID 224 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8066 2 0 0 Non Coding 8313 5 8 9 UTR 10 82 10 0 Phase 0 1 344 0 0 Coding 5 11 1037 0 Phase 1 1 0 341 0 Intron 10 1 0 128 Phase 2 0 0 0 340 Precision Recall F1 Precision Recall F1 Intergenic 0.99691 0.99975 0.99833 Non Coding 0.99976 0.99736 0.99856 UTR 0.85417 0.80392 0.82828 Phase 0 0.98567 0.99710 0.99135 Coding 0.99045 0.98481 0.98762 Phase 1 0.97708 0.99708 0.98698 Intron 1.00000 0.92086 0.95880 Phase 2 0.97421 1.00000 0.98694 Subgenic 0.99149 0.97735 0.98437 Coding 0.97899 0.99805 0.98843 Genic 0.98112 0.96368 0.97232 Reverse for Sequence contig_12334 - ID 224 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6876 1 0 73 Non Coding 8502 40 41 39 UTR 11 55 4 7 Phase 0 6 241 0 3 Coding 13 8 825 6 Phase 1 5 1 239 0 Intron 12 0 17 1454 Phase 2 3 0 2 240 Precision Recall F1 Precision Recall F1 Intergenic 0.99479 0.98935 0.99206 Non Coding 0.99836 0.98608 0.99218 UTR 0.85938 0.71429 0.78014 Phase 0 0.85461 0.96400 0.90602 Coding 0.97518 0.96831 0.97173 Phase 1 0.84752 0.97551 0.90702 Intron 0.94416 0.98045 0.96196 Phase 2 0.85106 0.97959 0.91082 Subgenic 0.95516 0.97602 0.96547 Coding 0.85106 0.97297 0.90794 Genic 0.95265 0.96766 0.96010 BP_Extractor for Sequence contig_12404 - ID 225 Forward for Sequence contig_12404 - ID 225 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7972 0 0 0 Non Coding 8026 0 0 0 UTR 17 0 0 0 Phase 0 4 0 0 0 Coding 49 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99179 1.00000 0.99588 Non Coding 0.99851 1.00000 0.99925 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_12404 - ID 225 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5060 0 0 27 Non Coding 6882 12 11 14 UTR 20 0 3 26 Phase 0 7 367 0 0 Coding 46 2 1116 14 Phase 1 5 0 368 0 Intron 4 0 18 1702 Phase 2 7 0 0 365 Precision Recall F1 Precision Recall F1 Intergenic 0.98635 0.99469 0.99051 Non Coding 0.99725 0.99465 0.99595 UTR 0.00000 0.00000 0.00000 Phase 0 0.96834 0.98128 0.97477 Coding 0.98153 0.94737 0.96415 Phase 1 0.97098 0.98660 0.97872 Intron 0.96213 0.98724 0.97452 Phase 2 0.96306 0.98118 0.97204 Subgenic 0.96972 0.97105 0.97039 Coding 0.96746 0.98302 0.97518 Genic 0.96905 0.95493 0.96194 BP_Extractor for Sequence contig_12443 - ID 226 Forward for Sequence contig_12443 - ID 226 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5266 0 0 0 Non Coding 5266 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_12443 - ID 226 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3600 0 0 0 Non Coding 3921 0 0 0 UTR 54 0 0 0 Phase 0 439 0 0 0 Coding 1590 0 0 0 Phase 1 452 0 0 0 Intron 22 0 0 0 Phase 2 454 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.68363 1.00000 0.81209 Non Coding 0.74459 1.00000 0.85360 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_12448 - ID 227 Forward for Sequence contig_12448 - ID 227 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7269 0 0 0 Non Coding 8320 0 0 0 UTR 9 0 0 0 Phase 0 83 0 0 0 Coding 513 0 0 0 Phase 1 90 0 0 0 Intron 773 0 0 0 Phase 2 71 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84879 1.00000 0.91821 Non Coding 0.97151 1.00000 0.98555 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_12448 - ID 227 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8564 0 0 0 Non Coding 8564 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_12478 - ID 228 Forward for Sequence contig_12478 - ID 228 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16374 3 348 152 Non Coding 19154 509 471 496 UTR 43 252 20 8 Phase 0 17 440 0 0 Coding 166 4 2427 8 Phase 1 20 0 478 0 Intron 327 6 52 1868 Phase 2 20 0 0 453 Precision Recall F1 Precision Recall F1 Intergenic 0.96830 0.97020 0.96925 Non Coding 0.99703 0.92845 0.96152 UTR 0.95094 0.78019 0.85714 Phase 0 0.46365 0.96280 0.62589 Coding 0.85248 0.93167 0.89032 Phase 1 0.50369 0.95984 0.66068 Intron 0.91749 0.82912 0.87107 Phase 2 0.47734 0.95772 0.63713 Subgenic 0.87958 0.88411 0.88184 Coding 0.48156 0.96008 0.64140 Genic 0.88326 0.87763 0.88043 Reverse for Sequence contig_12478 - ID 228 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22058 0 0 0 Non Coding 22058 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_12479 - ID 229 Forward for Sequence contig_12479 - ID 229 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7489 0 0 0 Non Coding 7489 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_12479 - ID 229 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2581 6 0 53 Non Coding 6271 58 64 64 UTR 6 351 10 2 Phase 0 3 336 0 3 Coding 10 0 1168 33 Phase 1 6 7 334 0 Intron 10 0 25 3234 Phase 2 6 0 3 334 Precision Recall F1 Precision Recall F1 Intergenic 0.99003 0.97765 0.98380 Non Coding 0.99761 0.97119 0.98423 UTR 0.98319 0.95122 0.96694 Phase 0 0.83791 0.98246 0.90444 Coding 0.97091 0.96449 0.96769 Phase 1 0.83292 0.96254 0.89305 Intron 0.97351 0.98929 0.98134 Phase 2 0.83292 0.97376 0.89785 Subgenic 0.97282 0.98259 0.97768 Coding 0.83458 0.97287 0.89843 Genic 0.97358 0.98020 0.97688 BP_Extractor for Sequence contig_12486 - ID 230 Forward for Sequence contig_12486 - ID 230 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17874 0 0 0 Non Coding 17874 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_12486 - ID 230 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16137 14 0 0 Non Coding 16860 6 8 7 UTR 3 243 6 2 Phase 0 3 328 0 0 Coding 0 0 993 13 Phase 1 5 0 326 0 Intron 0 0 3 460 Phase 2 4 0 0 327 Precision Recall F1 Precision Recall F1 Intergenic 0.99981 0.99913 0.99947 Non Coding 0.99929 0.99876 0.99902 UTR 0.94553 0.95669 0.95108 Phase 0 0.98204 0.99094 0.98647 Coding 0.99102 0.98708 0.98904 Phase 1 0.97605 0.98489 0.98045 Intron 0.96842 0.99352 0.98081 Phase 2 0.97904 0.98792 0.98346 Subgenic 0.98375 0.98911 0.98642 Coding 0.97904 0.98792 0.98346 Genic 0.97809 0.98433 0.98120 BP_Extractor for Sequence contig_12690 - ID 231 Forward for Sequence contig_12690 - ID 231 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8001 0 0 0 Non Coding 8001 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_12690 - ID 231 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7076 1 8 17 Non Coding 7233 20 19 22 UTR 8 49 8 6 Phase 0 0 234 0 0 Coding 0 0 746 10 Phase 1 2 0 235 0 Intron 4 3 0 65 Phase 2 4 0 0 232 Precision Recall F1 Precision Recall F1 Intergenic 0.99831 0.99634 0.99732 Non Coding 0.99917 0.99164 0.99539 UTR 0.92453 0.69014 0.79032 Phase 0 0.92126 1.00000 0.95902 Coding 0.97900 0.98677 0.98287 Phase 1 0.92520 0.99156 0.95723 Intron 0.66327 0.90278 0.76471 Phase 2 0.91339 0.98305 0.94694 Subgenic 0.94302 0.97947 0.96090 Coding 0.91995 0.99151 0.95439 Genic 0.94195 0.95662 0.94923 BP_Extractor for Sequence contig_12852 - ID 232 Forward for Sequence contig_12852 - ID 232 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10529 0 0 0 Non Coding 10529 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_12852 - ID 232 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10529 0 0 0 Non Coding 10529 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_12886 - ID 233 Forward for Sequence contig_12886 - ID 233 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11112 3 25 279 Non Coding 21917 324 303 309 UTR 198 307 17 28 Phase 0 132 904 0 0 Coding 372 0 3614 180 Phase 1 131 0 925 0 Intron 158 17 28 9657 Phase 2 131 0 0 919 Precision Recall F1 Precision Recall F1 Intergenic 0.93851 0.97311 0.95550 Non Coding 0.98234 0.95904 0.97055 UTR 0.93884 0.55818 0.70011 Phase 0 0.73616 0.87259 0.79859 Coding 0.98100 0.86750 0.92076 Phase 1 0.75326 0.87595 0.80998 Intron 0.95199 0.97941 0.96551 Phase 2 0.74837 0.87524 0.80685 Subgenic 0.95972 0.94617 0.95290 Coding 0.74593 0.87460 0.80516 Genic 0.95924 0.93153 0.94518 Reverse for Sequence contig_12886 - ID 233 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25111 3 0 0 Non Coding 25422 1 0 1 UTR 134 165 2 0 Phase 0 3 187 0 0 Coding 15 3 562 0 Phase 1 2 0 188 0 Intron 0 0 0 0 Phase 2 4 0 0 187 Precision Recall F1 Precision Recall F1 Intergenic 0.99410 0.99988 0.99698 Non Coding 0.99965 0.99992 0.99978 UTR 0.96491 0.54817 0.69915 Phase 0 0.99468 0.98421 0.98942 Coding 0.99645 0.96897 0.98252 Phase 1 1.00000 0.98947 0.99471 Intron NaN NaN NaN Phase 2 0.99468 0.97906 0.98681 Subgenic 0.99645 0.96897 0.98252 Coding 0.99645 0.98424 0.99031 Genic 0.98912 0.82520 0.89975 BP_Extractor for Sequence contig_12902 - ID 234 Forward for Sequence contig_12902 - ID 234 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13126 0 0 0 Non Coding 13126 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_12902 - ID 234 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11688 8 0 0 Non Coding 11981 1 1 0 UTR 45 152 0 0 Phase 0 134 247 0 0 Coding 410 5 744 2 Phase 1 133 0 247 0 Intron 0 0 0 72 Phase 2 134 0 0 248 Precision Recall F1 Precision Recall F1 Intergenic 0.96253 0.99932 0.98058 Non Coding 0.96761 0.99983 0.98346 UTR 0.92121 0.77157 0.83978 Phase 0 0.99597 0.64829 0.78537 Coding 1.00000 0.64083 0.78110 Phase 1 0.99597 0.65000 0.78662 Intron 0.97297 1.00000 0.98630 Phase 2 1.00000 0.64921 0.78730 Subgenic 0.99756 0.66180 0.79571 Coding 0.99731 0.64917 0.78643 Genic 0.98474 0.67692 0.80232 BP_Extractor for Sequence contig_13246 - ID 235 Forward for Sequence contig_13246 - ID 235 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3889 0 0 0 Non Coding 3889 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_13246 - ID 235 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3105 11 0 123 Non Coding 3496 23 24 24 UTR 0 91 49 0 Phase 0 0 108 0 0 Coding 0 0 340 0 Phase 1 0 0 107 0 Intron 5 0 4 161 Phase 2 0 0 0 107 Precision Recall F1 Precision Recall F1 Intergenic 0.99839 0.95863 0.97811 Non Coding 1.00000 0.98010 0.98995 UTR 0.89216 0.65000 0.75207 Phase 0 0.82443 1.00000 0.90377 Coding 0.86514 1.00000 0.92769 Phase 1 0.81679 1.00000 0.89916 Intron 0.56690 0.94706 0.70925 Phase 2 0.81679 1.00000 0.89916 Subgenic 0.74003 0.98235 0.84414 Coding 0.81934 1.00000 0.90070 Genic 0.75995 0.91077 0.82855 BP_Extractor for Sequence contig_13276 - ID 236 Forward for Sequence contig_13276 - ID 236 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25947 49 50 170 Non Coding 30497 103 104 101 UTR 65 851 15 22 Phase 0 149 1295 35 0 Coding 424 20 4219 63 Phase 1 143 1 1295 35 Intron 91 4 18 3228 Phase 2 145 35 0 1298 Precision Recall F1 Precision Recall F1 Intergenic 0.97814 0.98974 0.98390 Non Coding 0.98587 0.99000 0.98793 UTR 0.92100 0.89297 0.90677 Phase 0 0.90307 0.87559 0.88912 Coding 0.98071 0.89272 0.93465 Phase 1 0.90307 0.87856 0.89065 Intron 0.92679 0.96618 0.94607 Phase 2 0.90516 0.87821 0.89148 Subgenic 0.95658 0.92314 0.93957 Coding 0.90377 0.87745 0.89042 Genic 0.95281 0.91996 0.93609 Reverse for Sequence contig_13276 - ID 236 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28651 2 180 90 Non Coding 33167 215 208 209 UTR 57 381 9 4 Phase 0 40 440 1 0 Coding 336 8 1731 52 Phase 1 34 0 448 2 Intron 1411 21 51 2252 Phase 2 24 2 0 446 Precision Recall F1 Precision Recall F1 Intergenic 0.94077 0.99060 0.96504 Non Coding 0.99705 0.98130 0.98911 UTR 0.92476 0.84479 0.88297 Phase 0 0.66971 0.91476 0.77329 Coding 0.87823 0.81382 0.84480 Phase 1 0.68189 0.92562 0.78528 Intron 0.93912 0.60295 0.73439 Phase 2 0.67884 0.94492 0.79008 Subgenic 0.91165 0.67946 0.77861 Coding 0.67681 0.92832 0.78286 Genic 0.91278 0.69127 0.78673 BP_Extractor for Sequence contig_13376 - ID 237 Forward for Sequence contig_13376 - ID 237 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10621 0 0 0 Non Coding 10620 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 7 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99934 1.00000 0.99967 Non Coding 0.99925 1.00000 0.99962 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_13376 - ID 237 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9610 7 0 0 Non Coding 10081 16 16 16 UTR 3 126 0 0 Phase 0 13 144 11 0 Coding 5 4 510 40 Phase 1 10 0 144 11 Intron 0 3 3 317 Phase 2 11 11 0 144 Precision Recall F1 Precision Recall F1 Intergenic 0.99917 0.99927 0.99922 Non Coding 0.99664 0.99526 0.99595 UTR 0.90000 0.97674 0.93680 Phase 0 0.84211 0.85714 0.84956 Coding 0.99415 0.91234 0.95149 Phase 1 0.84211 0.87273 0.85714 Intron 0.88796 0.98142 0.93235 Phase 2 0.84211 0.86747 0.85460 Subgenic 0.95057 0.93764 0.94406 Coding 0.84211 0.86573 0.85375 Genic 0.94356 0.94263 0.94310 BP_Extractor for Sequence contig_13391 - ID 238 Forward for Sequence contig_13391 - ID 238 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10438 0 0 0 Non Coding 11095 28 26 25 UTR 24 104 6 0 Phase 0 39 345 0 0 Coding 90 0 1096 27 Phase 1 35 0 347 0 Intron 17 1 17 511 Phase 2 43 0 0 348 Precision Recall F1 Precision Recall F1 Intergenic 0.98761 1.00000 0.99376 Non Coding 0.98956 0.99293 0.99124 UTR 0.99048 0.77612 0.87029 Phase 0 0.92493 0.89844 0.91149 Coding 0.97945 0.90354 0.93997 Phase 1 0.93029 0.90838 0.91921 Intron 0.94981 0.93590 0.94280 Phase 2 0.93298 0.89003 0.91099 Subgenic 0.96982 0.91359 0.94087 Coding 0.92940 0.89888 0.91388 Genic 0.97106 0.90386 0.93625 Reverse for Sequence contig_13391 - ID 238 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7229 248 1 15 Non Coding 10598 15 15 13 UTR 9 977 8 17 Phase 0 7 553 0 3 Coding 5 50 1695 8 Phase 1 10 1 553 0 Intron 152 9 3 1905 Phase 2 9 0 1 553 Precision Recall F1 Precision Recall F1 Intergenic 0.97755 0.96477 0.97112 Non Coding 0.99755 0.99596 0.99676 UTR 0.76090 0.96637 0.85142 Phase 0 0.97188 0.98224 0.97703 Coding 0.99297 0.96416 0.97835 Phase 1 0.97188 0.98050 0.97617 Intron 0.97943 0.92073 0.94918 Phase 2 0.97188 0.98224 0.97703 Subgenic 0.98576 0.94068 0.96270 Coding 0.97188 0.98166 0.97674 Genic 0.92727 0.94605 0.93657 BP_Extractor for Sequence contig_13457 - ID 239 Forward for Sequence contig_13457 - ID 239 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22924 0 0 0 Non Coding 23686 8 13 13 UTR 4 477 17 4 Phase 0 5 737 0 0 Coding 3 0 2216 21 Phase 1 5 0 732 0 Intron 29 1 2 239 Phase 2 6 0 0 732 Precision Recall F1 Precision Recall F1 Intergenic 0.99843 1.00000 0.99922 Non Coding 0.99932 0.99857 0.99895 UTR 0.99791 0.95020 0.97347 Phase 0 0.98926 0.99326 0.99126 Coding 0.99150 0.98929 0.99039 Phase 1 0.98255 0.99322 0.98785 Intron 0.90530 0.88192 0.89346 Phase 2 0.98255 0.99187 0.98719 Subgenic 0.98239 0.97770 0.98004 Coding 0.98479 0.99278 0.98877 Genic 0.98488 0.97312 0.97896 Reverse for Sequence contig_13457 - ID 239 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19961 9 5 0 Non Coding 22140 240 275 264 UTR 41 88 24 10 Phase 0 108 915 0 2 Coding 326 4 3416 78 Phase 1 110 1 878 0 Intron 22 0 22 1931 Phase 2 112 0 2 890 Precision Recall F1 Precision Recall F1 Intergenic 0.98088 0.99930 0.99001 Non Coding 0.98531 0.96601 0.97557 UTR 0.87129 0.53988 0.66667 Phase 0 0.79152 0.89268 0.83906 Coding 0.98529 0.89331 0.93705 Phase 1 0.76017 0.88777 0.81903 Intron 0.95641 0.97772 0.96695 Phase 2 0.76990 0.88645 0.82407 Subgenic 0.97466 0.92206 0.94763 Coding 0.77387 0.88900 0.82745 Genic 0.97279 0.91161 0.94121 BP_Extractor for Sequence contig_13472 - ID 240 Forward for Sequence contig_13472 - ID 240 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 40369 64 272 141 Non Coding 43662 489 501 507 UTR 78 433 27 1 Phase 0 49 1447 14 0 Coding 156 10 5503 138 Phase 1 51 0 1435 14 Intron 84 11 49 2324 Phase 2 47 15 0 1429 Precision Recall F1 Precision Recall F1 Intergenic 0.99218 0.98832 0.99025 Non Coding 0.99664 0.96685 0.98152 UTR 0.83591 0.80334 0.81930 Phase 0 0.74167 0.95828 0.83617 Coding 0.94052 0.94765 0.94407 Phase 1 0.73590 0.95667 0.83188 Intron 0.89247 0.94165 0.91640 Phase 2 0.73282 0.95842 0.83057 Subgenic 0.92572 0.94586 0.93568 Coding 0.73680 0.95779 0.83288 Genic 0.92054 0.93715 0.92877 Reverse for Sequence contig_13472 - ID 240 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 38441 4 0 0 Non Coding 44549 18 17 17 UTR 276 616 9 91 Phase 0 538 1145 0 1 Coding 2003 18 3461 78 Phase 1 532 1 1146 0 Intron 1567 5 22 3069 Phase 2 549 0 1 1146 Precision Recall F1 Precision Recall F1 Intergenic 0.90905 0.99990 0.95231 Non Coding 0.96493 0.99883 0.98159 UTR 0.95801 0.62097 0.75352 Phase 0 0.98368 0.67993 0.80407 Coding 0.99112 0.62248 0.76469 Phase 1 0.98454 0.68255 0.80619 Intron 0.94781 0.65816 0.77686 Phase 2 0.98454 0.67571 0.80140 Subgenic 0.97028 0.63876 0.77037 Coding 0.98425 0.67938 0.80388 Genic 0.96921 0.63718 0.76888 BP_Extractor for Sequence contig_13511 - ID 241 Forward for Sequence contig_13511 - ID 241 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 922 0 0 0 Non Coding 3311 2 6 4 UTR 0 101 3 7 Phase 0 24 357 0 0 Coding 63 8 1070 2 Phase 1 25 0 353 0 Intron 0 0 4 2282 Phase 2 25 0 0 355 Precision Recall F1 Precision Recall F1 Intergenic 0.93604 1.00000 0.96696 Non Coding 0.97814 0.99639 0.98718 UTR 0.92661 0.90991 0.91818 Phase 0 0.99443 0.93701 0.96486 Coding 0.99350 0.93613 0.96396 Phase 1 0.98329 0.93386 0.95794 Intron 0.99607 0.99825 0.99716 Phase 2 0.98886 0.93421 0.96076 Subgenic 0.99525 0.97754 0.98632 Coding 0.98886 0.93503 0.96119 Genic 0.99310 0.97542 0.98418 Reverse for Sequence contig_13511 - ID 241 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4462 0 0 0 Non Coding 4462 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_13632 - ID 242 Forward for Sequence contig_13632 - ID 242 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11235 0 0 0 Non Coding 12824 1 1 0 UTR 0 234 0 1 Phase 0 5 437 1 0 Coding 1 12 1313 7 Phase 1 6 0 436 1 Intron 0 1 1 1350 Phase 2 6 0 0 437 Precision Recall F1 Precision Recall F1 Intergenic 0.99991 1.00000 0.99996 Non Coding 0.99868 0.99984 0.99926 UTR 0.94737 0.99574 0.97095 Phase 0 0.99772 0.98646 0.99205 Coding 0.99924 0.98500 0.99207 Phase 1 0.99543 0.98420 0.98978 Intron 0.99411 0.99852 0.99631 Phase 2 0.99772 0.98646 0.99205 Subgenic 0.99663 0.99181 0.99421 Coding 0.99696 0.98570 0.99130 Genic 0.99246 0.99212 0.99229 Reverse for Sequence contig_13632 - ID 242 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10567 1 0 0 Non Coding 12493 5 7 8 UTR 88 285 4 9 Phase 0 36 512 0 0 Coding 102 8 1546 19 Phase 1 40 0 510 0 Intron 22 16 1 1487 Phase 2 35 0 0 509 Precision Recall F1 Precision Recall F1 Intergenic 0.98033 0.99991 0.99002 Non Coding 0.99119 0.99840 0.99478 UTR 0.91935 0.73834 0.81897 Phase 0 0.99033 0.93431 0.96150 Coding 0.99678 0.92299 0.95846 Phase 1 0.98646 0.92727 0.95595 Intron 0.98152 0.97444 0.97797 Phase 2 0.98453 0.93566 0.95947 Subgenic 0.98924 0.94752 0.96793 Coding 0.98711 0.93240 0.95897 Genic 0.98282 0.92501 0.95304 BP_Extractor for Sequence contig_13644 - ID 243 Forward for Sequence contig_13644 - ID 243 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4823 2 0 0 Non Coding 6498 8 7 15 UTR 1 294 2 6 Phase 0 6 228 0 0 Coding 17 1 696 10 Phase 1 7 0 229 0 Intron 2 2 10 1358 Phase 2 5 0 0 221 Precision Recall F1 Precision Recall F1 Intergenic 0.99587 0.99959 0.99772 Non Coding 0.99724 0.99540 0.99632 UTR 0.98328 0.97030 0.97674 Phase 0 0.96610 0.97436 0.97021 Coding 0.98305 0.96133 0.97207 Phase 1 0.97034 0.97034 0.97034 Intron 0.98836 0.98980 0.98908 Phase 2 0.93644 0.97788 0.95671 Subgenic 0.98655 0.97996 0.98325 Coding 0.95763 0.97414 0.96581 Genic 0.98614 0.97874 0.98243 Reverse for Sequence contig_13644 - ID 243 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7224 0 0 0 Non Coding 7224 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_13738 - ID 244 Forward for Sequence contig_13738 - ID 244 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15397 11 0 0 Non Coding 15999 29 40 37 UTR 49 312 11 1 Phase 0 33 819 0 0 Coding 129 14 2530 7 Phase 1 34 0 808 0 Intron 0 0 3 187 Phase 2 41 0 0 811 Precision Recall F1 Precision Recall F1 Intergenic 0.98857 0.99929 0.99390 Non Coding 0.99329 0.99342 0.99336 UTR 0.92582 0.83646 0.87887 Phase 0 0.96580 0.96127 0.96353 Coding 0.99450 0.94403 0.96861 Phase 1 0.95283 0.95962 0.95621 Intron 0.95897 0.98421 0.97143 Phase 2 0.95637 0.95188 0.95412 Subgenic 0.99197 0.94669 0.96880 Coding 0.95833 0.95758 0.95796 Genic 0.98472 0.93401 0.95870 Reverse for Sequence contig_13738 - ID 244 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10465 5 0 55 Non Coding 12867 23 27 22 UTR 166 245 11 14 Phase 0 876 1023 0 0 Coding 2785 11 3114 80 Phase 1 891 0 1019 0 Intron 5 0 13 1682 Phase 2 879 0 0 1024 Precision Recall F1 Precision Recall F1 Intergenic 0.77975 0.99430 0.87405 Non Coding 0.82943 0.99444 0.90447 UTR 0.93870 0.56193 0.70301 Phase 0 0.97801 0.53870 0.69474 Coding 0.99235 0.51987 0.68230 Phase 1 0.97419 0.53351 0.68945 Intron 0.91862 0.98941 0.95270 Phase 2 0.97897 0.53810 0.69447 Subgenic 0.96518 0.62367 0.75772 Coding 0.97706 0.53676 0.69288 Genic 0.96386 0.62035 0.75487 BP_Extractor for Sequence contig_13802 - ID 245 Forward for Sequence contig_13802 - ID 245 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11013 1 6 132 Non Coding 13280 18 23 27 UTR 31 23 12 0 Phase 0 23 345 0 0 Coding 84 2 1071 32 Phase 1 26 0 340 0 Intron 17 0 0 2018 Phase 2 24 0 0 336 Precision Recall F1 Precision Recall F1 Intergenic 0.98816 0.98754 0.98785 Non Coding 0.99453 0.99491 0.99472 UTR 0.88462 0.34848 0.50000 Phase 0 0.95041 0.93750 0.94391 Coding 0.98347 0.90076 0.94030 Phase 1 0.93664 0.92896 0.93278 Intron 0.92484 0.99165 0.95708 Phase 2 0.92562 0.93333 0.92946 Subgenic 0.94436 0.95813 0.95119 Coding 0.93756 0.93327 0.93541 Genic 0.94389 0.94590 0.94489 Reverse for Sequence contig_13802 - ID 245 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13117 0 0 89 Non Coding 13926 6 9 9 UTR 91 7 4 2 Phase 0 17 149 0 0 Coding 57 0 456 2 Phase 1 17 0 146 0 Intron 27 4 5 581 Phase 2 17 0 0 146 Precision Recall F1 Precision Recall F1 Intergenic 0.98683 0.99326 0.99004 Non Coding 0.99635 0.99828 0.99731 UTR 0.63636 0.06731 0.12174 Phase 0 0.96129 0.89759 0.92835 Coding 0.98065 0.88544 0.93061 Phase 1 0.94194 0.89571 0.91824 Intron 0.86202 0.94165 0.90008 Phase 2 0.94194 0.89571 0.91824 Subgenic 0.91045 0.91608 0.91325 Coding 0.94839 0.89634 0.92163 Genic 0.90783 0.84466 0.87510 BP_Extractor for Sequence contig_14014 - ID 246 Forward for Sequence contig_14014 - ID 246 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17080 0 0 0 Non Coding 17065 0 0 0 UTR 19 0 0 0 Phase 0 175 0 0 0 Coding 484 0 0 0 Phase 1 172 0 0 0 Intron 6 0 0 0 Phase 2 177 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97106 1.00000 0.98532 Non Coding 0.97021 1.00000 0.98488 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_14014 - ID 246 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7894 3 9 0 Non Coding 14721 56 55 66 UTR 7 451 1 16 Phase 0 9 889 0 0 Coding 0 4 2748 26 Phase 1 13 0 890 0 Intron 0 0 77 6353 Phase 2 11 0 0 879 Precision Recall F1 Precision Recall F1 Intergenic 0.99911 0.99848 0.99880 Non Coding 0.99776 0.98812 0.99292 UTR 0.98472 0.94947 0.96677 Phase 0 0.94074 0.98998 0.96473 Coding 0.96931 0.98920 0.97916 Phase 1 0.94180 0.98560 0.96320 Intron 0.99343 0.98802 0.99072 Phase 2 0.93016 0.98764 0.95804 Subgenic 0.98602 0.98838 0.98720 Coding 0.93757 0.98774 0.96200 Genic 0.98596 0.98647 0.98622 BP_Extractor for Sequence contig_14040 - ID 247 Forward for Sequence contig_14040 - ID 247 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19292 0 0 0 Non Coding 19292 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_14040 - ID 247 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16419 2 0 0 Non Coding 18710 58 58 61 UTR 7 68 0 0 Phase 0 4 132 0 0 Coding 36 3 551 21 Phase 1 4 0 132 0 Intron 725 1 19 1440 Phase 2 4 0 0 129 Precision Recall F1 Precision Recall F1 Intergenic 0.95532 0.99988 0.97709 Non Coding 0.99936 0.99063 0.99497 UTR 0.91892 0.90667 0.91275 Phase 0 0.69474 0.97059 0.80982 Coding 0.96667 0.90180 0.93311 Phase 1 0.69474 0.97059 0.80982 Intron 0.98563 0.65904 0.78991 Phase 2 0.67895 0.96992 0.79876 Subgenic 0.98031 0.71209 0.82494 Coding 0.68947 0.97037 0.80615 Genic 0.97815 0.71717 0.82757 BP_Extractor for Sequence contig_14186 - ID 248 Forward for Sequence contig_14186 - ID 248 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9635 7 0 0 Non Coding 15609 11 13 14 UTR 22 835 0 10 Phase 0 136 1161 0 0 Coding 332 5 3493 37 Phase 1 141 0 1159 0 Intron 0 2 23 5138 Phase 2 137 0 0 1158 Precision Recall F1 Precision Recall F1 Intergenic 0.96456 0.99927 0.98161 Non Coding 0.97416 0.99757 0.98573 UTR 0.98351 0.96309 0.97319 Phase 0 0.99061 0.89514 0.94046 Coding 0.99346 0.90328 0.94623 Phase 1 0.98891 0.89154 0.93770 Intron 0.99094 0.99516 0.99304 Phase 2 0.98805 0.89421 0.93879 Subgenic 0.99195 0.95581 0.97355 Coding 0.98919 0.89363 0.93898 Genic 0.99120 0.95645 0.97352 Reverse for Sequence contig_14186 - ID 248 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12961 0 10 0 Non Coding 16470 130 149 149 UTR 1 217 27 2 Phase 0 10 881 0 0 Coding 19 8 2987 7 Phase 1 15 0 862 0 Intron 0 0 9 3291 Phase 2 11 0 0 862 Precision Recall F1 Precision Recall F1 Intergenic 0.99846 0.99923 0.99884 Non Coding 0.99782 0.97467 0.98611 UTR 0.96444 0.87854 0.91949 Phase 0 0.87141 0.98878 0.92639 Coding 0.98483 0.98875 0.98679 Phase 1 0.85262 0.98290 0.91314 Intron 0.99727 0.99727 0.99727 Phase 2 0.85262 0.98740 0.91507 Subgenic 0.99132 0.99320 0.99226 Coding 0.85889 0.98637 0.91822 Genic 0.99039 0.98889 0.98964 BP_Extractor for Sequence contig_14238 - ID 249 Forward for Sequence contig_14238 - ID 249 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8040 0 0 0 Non Coding 8047 0 0 0 UTR 5 0 0 0 Phase 0 0 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99913 1.00000 0.99956 Non Coding 1.00000 1.00000 1.00000 UTR NaN 0.00000 0.00000 Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 Reverse for Sequence contig_14238 - ID 249 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8047 0 0 0 Non Coding 8047 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_14291 - ID 250 Forward for Sequence contig_14291 - ID 250 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5136 0 0 0 Non Coding 5136 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_14291 - ID 250 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5136 0 0 0 Non Coding 5136 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_14387 - ID 251 Forward for Sequence contig_14387 - ID 251 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13768 0 0 0 Non Coding 14233 0 0 0 UTR 10 0 0 0 Phase 0 95 0 0 0 Coding 389 0 0 0 Phase 1 97 0 0 0 Intron 358 0 0 0 Phase 2 100 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94788 1.00000 0.97324 Non Coding 0.97990 1.00000 0.98985 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_14387 - ID 251 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14525 0 0 0 Non Coding 14525 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_14445 - ID 252 Forward for Sequence contig_14445 - ID 252 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9792 0 0 0 Non Coding 9818 0 0 0 UTR 21 0 0 0 Phase 0 22 0 0 0 Coding 74 0 0 0 Phase 1 27 0 0 0 Intron 0 0 0 0 Phase 2 20 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99039 1.00000 0.99517 Non Coding 0.99302 1.00000 0.99650 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_14445 - ID 252 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4888 12 242 27 Non Coding 5593 590 537 597 UTR 75 301 15 27 Phase 0 14 828 0 0 Coding 76 5 3994 4 Phase 1 14 0 881 0 Intron 12 27 3 179 Phase 2 12 0 0 821 Precision Recall F1 Precision Recall F1 Intergenic 0.96773 0.94564 0.95656 Non Coding 0.99290 0.76438 0.86378 UTR 0.87246 0.72010 0.78899 Phase 0 0.58392 0.98337 0.73274 Coding 0.93888 0.97916 0.95860 Phase 1 0.62130 0.98436 0.76178 Intron 0.75527 0.80995 0.78166 Phase 2 0.57898 0.98559 0.72945 Subgenic 0.92919 0.97047 0.94938 Coding 0.59473 0.98444 0.74150 Genic 0.92514 0.94828 0.93657 BP_Extractor for Sequence contig_14450 - ID 253 Forward for Sequence contig_14450 - ID 253 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 50457 7 3 63 Non Coding 52799 56 53 58 UTR 373 275 14 6 Phase 0 642 1391 0 0 Coding 2308 5 4277 69 Phase 1 606 0 1394 0 Intron 76 1 47 1049 Phase 2 642 0 0 1389 Precision Recall F1 Precision Recall F1 Intergenic 0.94819 0.99856 0.97272 Non Coding 0.96544 0.99685 0.98089 UTR 0.95486 0.41168 0.57531 Phase 0 0.96130 0.68421 0.79943 Coding 0.98526 0.64229 0.77764 Phase 1 0.96337 0.69700 0.80882 Intron 0.88374 0.89429 0.88898 Phase 2 0.95992 0.68390 0.79873 Subgenic 0.96346 0.68003 0.79731 Coding 0.96153 0.68832 0.80231 Genic 0.96303 0.65894 0.78248 Reverse for Sequence contig_14450 - ID 253 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 47716 2 9 0 Non Coding 53607 33 40 37 UTR 669 158 9 0 Phase 0 774 1043 0 0 Coding 6272 5 3191 0 Phase 1 738 0 1036 0 Intron 795 15 19 170 Phase 2 683 0 0 1039 Precision Recall F1 Precision Recall F1 Intergenic 0.86049 0.99977 0.92492 Non Coding 0.96066 0.99795 0.97895 UTR 0.87778 0.18900 0.31102 Phase 0 0.96933 0.57402 0.72105 Coding 0.98854 0.33703 0.50268 Phase 1 0.96283 0.58399 0.72702 Intron 1.00000 0.17017 0.29085 Phase 2 0.96561 0.60337 0.74267 Subgenic 0.98911 0.32110 0.48482 Coding 0.96592 0.58686 0.73013 Genic 0.98351 0.31133 0.47295 BP_Extractor for Sequence contig_14463 - ID 254 Forward for Sequence contig_14463 - ID 254 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15452 0 0 0 Non Coding 15449 0 0 0 UTR 32 0 0 0 Phase 0 48 0 0 0 Coding 71 0 0 0 Phase 1 27 0 0 0 Intron 0 0 0 0 Phase 2 31 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99338 1.00000 0.99668 Non Coding 0.99319 1.00000 0.99658 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_14463 - ID 254 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11481 21 0 0 Non Coding 13640 34 35 35 UTR 49 309 23 0 Phase 0 7 597 0 0 Coding 34 6 1854 2 Phase 1 8 0 596 0 Intron 13 0 16 1747 Phase 2 7 0 0 596 Precision Recall F1 Precision Recall F1 Intergenic 0.99171 0.99817 0.99493 Non Coding 0.99839 0.99243 0.99540 UTR 0.91964 0.81102 0.86192 Phase 0 0.94612 0.98841 0.96680 Coding 0.97940 0.97785 0.97862 Phase 1 0.94453 0.98675 0.96518 Intron 0.99886 0.98367 0.99121 Phase 2 0.94453 0.98839 0.96596 Subgenic 0.98874 0.98066 0.98469 Coding 0.94506 0.98785 0.96598 Genic 0.98291 0.96472 0.97373 BP_Extractor for Sequence contig_14486 - ID 255 Forward for Sequence contig_14486 - ID 255 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9521 0 0 0 Non Coding 9521 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99979 1.00000 0.99989 Non Coding 0.99979 1.00000 0.99989 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_14486 - ID 255 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9522 0 0 0 Non Coding 9522 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99989 1.00000 0.99995 Non Coding 0.99989 1.00000 0.99995 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_14489 - ID 256 Forward for Sequence contig_14489 - ID 256 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10838 0 0 0 Non Coding 10838 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_14489 - ID 256 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5101 2 113 99 Non Coding 7357 252 236 251 UTR 64 172 0 5 Phase 0 29 879 0 0 Coding 157 1 3268 12 Phase 1 29 0 895 0 Intron 53 2 12 1777 Phase 2 30 0 0 880 Precision Recall F1 Precision Recall F1 Intergenic 0.94902 0.95974 0.95435 Non Coding 0.98818 0.90872 0.94679 UTR 0.97175 0.71369 0.82297 Phase 0 0.77719 0.96806 0.86219 Coding 0.96316 0.95055 0.95681 Phase 1 0.79134 0.96861 0.87105 Intron 0.93872 0.96367 0.95103 Phase 2 0.77807 0.96703 0.86232 Subgenic 0.95441 0.95513 0.95477 Coding 0.78220 0.96791 0.86520 Genic 0.95497 0.94460 0.94975 BP_Extractor for Sequence contig_14501 - ID 257 Forward for Sequence contig_14501 - ID 257 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4356 0 0 0 Non Coding 4356 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_14501 - ID 257 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4356 0 0 0 Non Coding 4356 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_14563 - ID 258 Forward for Sequence contig_14563 - ID 258 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13151 0 0 0 Non Coding 13150 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99992 1.00000 0.99996 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN Reverse for Sequence contig_14563 - ID 258 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12161 2 2 42 Non Coding 12402 7 9 9 UTR 23 18 1 0 Phase 0 12 230 0 0 Coding 51 0 706 36 Phase 1 15 0 228 0 Intron 0 0 2 107 Phase 2 11 0 0 228 Precision Recall F1 Precision Recall F1 Intergenic 0.99395 0.99623 0.99509 Non Coding 0.99695 0.99799 0.99747 UTR 0.90000 0.42857 0.58065 Phase 0 0.97046 0.95041 0.96033 Coding 0.99297 0.89029 0.93883 Phase 1 0.96203 0.93827 0.95000 Intron 0.57838 0.98165 0.72789 Phase 2 0.96203 0.95397 0.95798 Subgenic 0.90737 0.90133 0.90434 Coding 0.96484 0.94751 0.95610 Genic 0.90721 0.88030 0.89355 BP_Extractor for Sequence contig_14720 - ID 259 Forward for Sequence contig_14720 - ID 259 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13654 0 0 0 Non Coding 14231 13 23 20 UTR 4 111 13 3 Phase 0 4 292 0 0 Coding 7 8 897 1 Phase 1 3 0 282 0 Intron 2 5 5 445 Phase 2 2 0 0 285 Precision Recall F1 Precision Recall F1 Intergenic 0.99905 1.00000 0.99952 Non Coding 0.99937 0.99608 0.99772 UTR 0.89516 0.84733 0.87059 Phase 0 0.95738 0.98649 0.97171 Coding 0.98033 0.98248 0.98140 Phase 1 0.92459 0.98947 0.95593 Intron 0.99109 0.97374 0.98234 Phase 2 0.93443 0.99303 0.96284 Subgenic 0.98387 0.97956 0.98171 Coding 0.93880 0.98963 0.96354 Genic 0.97648 0.96802 0.97223 Reverse for Sequence contig_14720 - ID 259 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15109 0 0 0 Non Coding 15122 0 0 0 UTR 15 0 0 0 Phase 0 12 0 0 0 Coding 31 0 0 0 Phase 1 11 0 0 0 Intron 0 0 0 0 Phase 2 10 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99696 1.00000 0.99848 Non Coding 0.99782 1.00000 0.99891 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_14770 - ID 260 Forward for Sequence contig_14770 - ID 260 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4110 0 63 0 Non Coding 4687 32 32 36 UTR 56 73 2 0 Phase 0 27 246 0 0 Coding 272 4 769 19 Phase 1 36 0 246 0 Intron 36 3 0 210 Phase 2 33 0 0 242 Precision Recall F1 Precision Recall F1 Intergenic 0.91864 0.98490 0.95062 Non Coding 0.97993 0.97911 0.97952 UTR 0.91250 0.55725 0.69194 Phase 0 0.88489 0.90110 0.89292 Coding 0.92206 0.72274 0.81033 Phase 1 0.88489 0.87234 0.87857 Intron 0.91703 0.84337 0.87866 Phase 2 0.87050 0.88000 0.87523 Subgenic 0.92098 0.74562 0.82407 Coding 0.88010 0.88434 0.88221 Genic 0.92038 0.72853 0.81330 Reverse for Sequence contig_14770 - ID 260 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5617 0 0 0 Non Coding 5616 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99982 1.00000 0.99991 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN BP_Extractor for Sequence contig_14846 - ID 261 Forward for Sequence contig_14846 - ID 261 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6820 2 21 83 Non Coding 11759 59 57 52 UTR 9 229 6 18 Phase 0 3 886 0 0 Coding 3 1 2793 17 Phase 1 6 0 888 0 Intron 62 4 15 4523 Phase 2 3 0 0 893 Precision Recall F1 Precision Recall F1 Intergenic 0.98927 0.98470 0.98698 Non Coding 0.99898 0.98591 0.99240 UTR 0.97034 0.87405 0.91968 Phase 0 0.93757 0.99663 0.96619 Coding 0.98519 0.99254 0.98885 Phase 1 0.93968 0.99329 0.96574 Intron 0.97457 0.98241 0.97847 Phase 2 0.94497 0.99665 0.97012 Subgenic 0.97860 0.98625 0.98241 Coding 0.94074 0.99552 0.96736 Genic 0.97835 0.98242 0.98038 Reverse for Sequence contig_14846 - ID 261 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14606 0 0 0 Non Coding 14606 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_14999 - ID 262 Forward for Sequence contig_14999 - ID 262 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7235 4 78 120 Non Coding 8264 39 41 37 UTR 16 94 5 0 Phase 0 2 91 0 0 Coding 22 0 305 6 Phase 1 1 0 89 0 Intron 0 0 2 773 Phase 2 3 0 0 93 Precision Recall F1 Precision Recall F1 Intergenic 0.99478 0.97284 0.98368 Non Coding 0.99927 0.98604 0.99261 UTR 0.95918 0.81739 0.88263 Phase 0 0.70000 0.97849 0.81614 Coding 0.78205 0.91592 0.84371 Phase 1 0.68462 0.98889 0.80909 Intron 0.85984 0.99742 0.92354 Phase 2 0.71538 0.96875 0.82301 Subgenic 0.83631 0.97292 0.89946 Coding 0.70000 0.97849 0.81614 Genic 0.84499 0.95830 0.89808 Reverse for Sequence contig_14999 - ID 262 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5879 1 0 0 Non Coding 7631 8 3 4 UTR 1 99 12 10 Phase 0 3 333 0 0 Coding 0 7 1010 8 Phase 1 1 0 338 0 Intron 2 21 1 1609 Phase 2 2 0 0 337 Precision Recall F1 Precision Recall F1 Intergenic 0.99949 0.99983 0.99966 Non Coding 0.99921 0.99804 0.99863 UTR 0.77344 0.81148 0.79200 Phase 0 0.97654 0.99107 0.98375 Coding 0.98729 0.98537 0.98633 Phase 1 0.99120 0.99705 0.99412 Intron 0.98894 0.98530 0.98712 Phase 2 0.98827 0.99410 0.99118 Subgenic 0.98830 0.98533 0.98681 Coding 0.98534 0.99408 0.98969 Genic 0.97840 0.97770 0.97805 BP_Extractor for Sequence contig_15040 - ID 263 Forward for Sequence contig_15040 - ID 263 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12183 5 6 49 Non Coding 14173 33 29 30 UTR 14 180 17 8 Phase 0 14 689 0 2 Coding 51 0 2145 23 Phase 1 14 2 693 0 Intron 30 3 4 1670 Phase 2 15 0 2 692 Precision Recall F1 Precision Recall F1 Intergenic 0.99226 0.99510 0.99368 Non Coding 0.99698 0.99355 0.99526 UTR 0.95745 0.82192 0.88452 Phase 0 0.95166 0.97730 0.96431 Coding 0.98757 0.96665 0.97700 Phase 1 0.95718 0.97743 0.96720 Intron 0.95429 0.97832 0.96616 Phase 2 0.95580 0.97602 0.96581 Subgenic 0.97272 0.97173 0.97222 Coding 0.95488 0.97692 0.96577 Genic 0.97202 0.96381 0.96790 Reverse for Sequence contig_15040 - ID 263 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9480 1 0 47 Non Coding 14207 19 21 17 UTR 280 193 6 17 Phase 0 114 593 0 0 Coding 514 5 1819 24 Phase 1 118 0 591 0 Intron 2082 7 11 1902 Phase 2 113 0 0 595 Precision Recall F1 Precision Recall F1 Intergenic 0.76724 0.99496 0.86639 Non Coding 0.97629 0.99600 0.98605 UTR 0.93689 0.38911 0.54986 Phase 0 0.96895 0.83876 0.89917 Coding 0.99074 0.77011 0.86660 Phase 1 0.96569 0.83357 0.89478 Intron 0.95578 0.47526 0.63485 Phase 2 0.97222 0.84040 0.90152 Subgenic 0.97256 0.58470 0.73032 Coding 0.96895 0.83757 0.89848 Genic 0.97073 0.57055 0.71869 BP_Extractor for Sequence contig_15108 - ID 264 Forward for Sequence contig_15108 - ID 264 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34101 1 70 0 Non Coding 43614 181 169 173 UTR 138 1273 14 28 Phase 0 306 1737 2 0 Coding 995 12 5607 56 Phase 1 302 0 1749 1 Intron 202 39 69 7678 Phase 2 301 2 0 1746 Precision Recall F1 Precision Recall F1 Intergenic 0.96233 0.99792 0.97980 Non Coding 0.97958 0.98815 0.98385 UTR 0.96075 0.87612 0.91649 Phase 0 0.90469 0.84939 0.87617 Coding 0.97344 0.84063 0.90217 Phase 1 0.91094 0.85234 0.88066 Intron 0.98918 0.96119 0.97498 Phase 2 0.90938 0.85212 0.87982 Subgenic 0.98247 0.90633 0.94287 Coding 0.90833 0.85129 0.87888 Genic 0.98053 0.90361 0.94050 Reverse for Sequence contig_15108 - ID 264 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 41962 6 136 321 Non Coding 46172 184 167 173 UTR 294 449 10 23 Phase 0 114 1083 0 1 Coding 715 5 3632 49 Phase 1 101 1 1099 0 Intron 309 5 26 2341 Phase 2 92 0 2 1094 Precision Recall F1 Precision Recall F1 Intergenic 0.96955 0.98909 0.97922 Non Coding 0.99339 0.98878 0.99108 UTR 0.96559 0.57861 0.72361 Phase 0 0.85410 0.90401 0.87835 Coding 0.95478 0.82527 0.88531 Phase 1 0.86672 0.91507 0.89024 Intron 0.85625 0.87318 0.86464 Phase 2 0.86278 0.92088 0.89088 Subgenic 0.91358 0.84341 0.87709 Coding 0.86120 0.91330 0.88648 Genic 0.91704 0.81726 0.86428 BP_Extractor for Sequence contig_15166 - ID 265 Forward for Sequence contig_15166 - ID 265 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11259 2 22 3 Non Coding 14579 42 54 41 UTR 1 103 19 7 Phase 0 2 242 0 0 Coding 1 3 808 14 Phase 1 3 0 230 0 Intron 1 0 3 3194 Phase 2 4 0 0 243 Precision Recall F1 Precision Recall F1 Intergenic 0.99973 0.99761 0.99867 Non Coding 0.99938 0.99069 0.99502 UTR 0.95370 0.79231 0.86555 Phase 0 0.85211 0.99180 0.91667 Coding 0.94836 0.97821 0.96305 Phase 1 0.80986 0.98712 0.88975 Intron 0.99254 0.99875 0.99564 Phase 2 0.85563 0.98381 0.91525 Subgenic 0.98329 0.99453 0.98888 Coding 0.83920 0.98757 0.90736 Genic 0.98253 0.98820 0.98536 Reverse for Sequence contig_15166 - ID 265 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11527 1 0 2 Non Coding 13972 16 20 22 UTR 21 343 5 22 Phase 0 16 460 0 0 Coding 65 8 1367 0 Phase 1 12 0 456 0 Intron 8 13 56 2002 Phase 2 12 0 0 454 Precision Recall F1 Precision Recall F1 Intergenic 0.99191 0.99974 0.99581 Non Coding 0.99715 0.99587 0.99651 UTR 0.93973 0.87724 0.90741 Phase 0 0.96639 0.96639 0.96639 Coding 0.95728 0.94931 0.95328 Phase 1 0.95798 0.97436 0.96610 Intron 0.98815 0.96296 0.97540 Phase 2 0.95378 0.97425 0.96391 Subgenic 0.97539 0.95737 0.96630 Coding 0.95938 0.97163 0.96547 Genic 0.97198 0.94936 0.96054 BP_Extractor for Sequence contig_15168 - ID 266 Forward for Sequence contig_15168 - ID 266 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2594 0 0 0 Non Coding 2594 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_15168 - ID 266 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2594 0 0 0 Non Coding 2594 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_15202 - ID 267 Forward for Sequence contig_15202 - ID 267 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6027 0 0 0 Non Coding 6027 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_15202 - ID 267 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6027 0 0 0 Non Coding 6027 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_15275 - ID 268 Forward for Sequence contig_15275 - ID 268 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9402 10 64 1 Non Coding 10547 83 90 92 UTR 8 252 19 3 Phase 0 17 1081 4 0 Coding 31 23 3389 49 Phase 1 24 0 1074 1 Intron 5 1 32 824 Phase 2 21 4 0 1075 Precision Recall F1 Precision Recall F1 Intergenic 0.99534 0.99209 0.99371 Non Coding 0.99416 0.97549 0.98473 UTR 0.88112 0.89362 0.88732 Phase 0 0.92551 0.98094 0.95242 Coding 0.96718 0.97050 0.96884 Phase 1 0.91952 0.97725 0.94751 Intron 0.93957 0.95592 0.94767 Phase 2 0.92038 0.97727 0.94797 Subgenic 0.96165 0.96762 0.96463 Coding 0.92180 0.97849 0.94930 Genic 0.95672 0.96311 0.95991 Reverse for Sequence contig_15275 - ID 268 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14108 0 0 0 Non Coding 14097 0 0 0 UTR 0 0 0 0 Phase 0 4 0 0 0 Coding 5 0 0 0 Phase 1 6 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99965 1.00000 0.99982 Non Coding 0.99887 1.00000 0.99943 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_15426 - ID 269 Forward for Sequence contig_15426 - ID 269 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15992 0 0 0 Non Coding 15996 0 0 0 UTR 4 0 0 0 Phase 0 5 0 0 0 Coding 15 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99881 1.00000 0.99941 Non Coding 0.99906 1.00000 0.99953 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_15426 - ID 269 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12635 4 0 2 Non Coding 13545 7 10 8 UTR 4 209 4 0 Phase 0 1 814 0 0 Coding 0 4 2456 0 Phase 1 1 0 811 0 Intron 4 0 3 686 Phase 2 1 0 0 813 Precision Recall F1 Precision Recall F1 Intergenic 0.99937 0.99953 0.99945 Non Coding 0.99978 0.99816 0.99897 UTR 0.96313 0.96313 0.96313 Phase 0 0.99147 0.99877 0.99511 Coding 0.99716 0.99837 0.99777 Phase 1 0.98782 0.99877 0.99326 Intron 0.99709 0.98990 0.99348 Phase 2 0.99026 0.99877 0.99450 Subgenic 0.99714 0.99651 0.99683 Coding 0.98985 0.99877 0.99429 Genic 0.99495 0.99436 0.99466 BP_Extractor for Sequence contig_15487 - ID 270 Forward for Sequence contig_15487 - ID 270 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11756 9 0 0 Non Coding 19646 129 118 116 UTR 1 490 2 9 Phase 0 5 709 0 0 Coding 0 6 2463 44 Phase 1 7 0 720 0 Intron 1 1 49 7347 Phase 2 6 0 0 722 Precision Recall F1 Precision Recall F1 Intergenic 0.99983 0.99924 0.99953 Non Coding 0.99908 0.98186 0.99040 UTR 0.96838 0.97610 0.97222 Phase 0 0.84606 0.99300 0.91366 Coding 0.97971 0.98010 0.97991 Phase 1 0.85919 0.99037 0.92013 Intron 0.99284 0.99311 0.99297 Phase 2 0.86158 0.99176 0.92209 Subgenic 0.98951 0.98981 0.98966 Coding 0.85561 0.99170 0.91864 Genic 0.98848 0.98915 0.98882 Reverse for Sequence contig_15487 - ID 270 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18985 0 0 0 Non Coding 21226 0 0 0 UTR 90 62 0 0 Phase 0 132 184 0 0 Coding 766 4 552 0 Phase 1 132 0 184 0 Intron 1522 0 0 197 Phase 2 136 0 0 184 Precision Recall F1 Precision Recall F1 Intergenic 0.88869 1.00000 0.94106 Non Coding 0.98150 1.00000 0.99067 UTR 0.93939 0.40789 0.56881 Phase 0 1.00000 0.58228 0.73600 Coding 1.00000 0.41755 0.58911 Phase 1 1.00000 0.58228 0.73600 Intron 1.00000 0.11460 0.20564 Phase 2 1.00000 0.57500 0.73016 Subgenic 1.00000 0.24630 0.39525 Coding 1.00000 0.57983 0.73404 Genic 0.99509 0.25399 0.40469 BP_Extractor for Sequence contig_15555 - ID 271 Forward for Sequence contig_15555 - ID 271 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20308 0 0 0 Non Coding 20527 0 0 0 UTR 75 0 0 0 Phase 0 231 0 0 0 Coding 842 0 0 0 Phase 1 234 0 0 0 Intron 2 0 0 0 Phase 2 235 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95671 1.00000 0.97787 Non Coding 0.96702 1.00000 0.98324 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_15555 - ID 271 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10516 4 0 0 Non Coding 17888 131 138 146 UTR 80 129 14 33 Phase 0 23 959 0 0 Coding 62 18 3222 75 Phase 1 20 0 952 0 Intron 135 3 34 6902 Phase 2 26 0 0 944 Precision Recall F1 Precision Recall F1 Intergenic 0.97434 0.99962 0.98682 Non Coding 0.99616 0.97733 0.98665 UTR 0.83766 0.50391 0.62927 Phase 0 0.87982 0.97658 0.92568 Coding 0.98532 0.95410 0.96946 Phase 1 0.87339 0.97942 0.92338 Intron 0.98459 0.97569 0.98012 Phase 2 0.86606 0.97320 0.91650 Subgenic 0.98482 0.96871 0.97670 Coding 0.87309 0.97640 0.92186 Genic 0.98265 0.95760 0.96996 BP_Extractor for Sequence contig_15624 - ID 272 Forward for Sequence contig_15624 - ID 272 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3774 10 32 5 Non Coding 4851 108 110 113 UTR 24 181 8 0 Phase 0 4 202 0 4 Coding 11 14 887 1 Phase 1 5 4 200 0 Intron 6 38 15 799 Phase 2 3 0 4 197 Precision Recall F1 Precision Recall F1 Intergenic 0.98925 0.98770 0.98848 Non Coding 0.99753 0.93613 0.96585 UTR 0.74486 0.84977 0.79386 Phase 0 0.64331 0.96190 0.77099 Coding 0.94161 0.97152 0.95633 Phase 1 0.63694 0.95694 0.76482 Intron 0.99255 0.93124 0.96091 Phase 2 0.62739 0.96569 0.76062 Subgenic 0.96508 0.95200 0.95850 Coding 0.63588 0.96148 0.76550 Genic 0.93819 0.94103 0.93961 Reverse for Sequence contig_15624 - ID 272 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4982 3 22 0 Non Coding 5263 36 37 38 UTR 37 6 0 5 Phase 0 25 119 0 0 Coding 183 1 441 34 Phase 1 25 0 118 0 Intron 9 0 2 80 Phase 2 27 0 0 117 Precision Recall F1 Precision Recall F1 Intergenic 0.95605 0.99501 0.97514 Non Coding 0.98558 0.97934 0.98245 UTR 0.60000 0.12500 0.20690 Phase 0 0.76774 0.82639 0.79599 Coding 0.94839 0.66920 0.78470 Phase 1 0.76129 0.82517 0.79195 Intron 0.67227 0.87912 0.76190 Phase 2 0.75484 0.81250 0.78261 Subgenic 0.89212 0.69467 0.78111 Coding 0.76129 0.82135 0.79018 Genic 0.88721 0.66040 0.75718 BP_Extractor for Sequence contig_15739 - ID 273 Forward for Sequence contig_15739 - ID 273 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1211 0 2 43 Non Coding 2268 166 150 156 UTR 24 28 32 29 Phase 0 9 758 4 1 Coding 185 4 2738 17 Phase 1 15 4 776 7 Intron 83 2 27 680 Phase 2 14 5 3 769 Precision Recall F1 Precision Recall F1 Intergenic 0.80572 0.96417 0.87785 Non Coding 0.98352 0.82774 0.89893 UTR 0.82353 0.24779 0.38095 Phase 0 0.81243 0.98187 0.88915 Coding 0.97821 0.93003 0.95351 Phase 1 0.83173 0.96758 0.89452 Intron 0.88427 0.85859 0.87124 Phase 2 0.82422 0.97219 0.89211 Subgenic 0.95796 0.91488 0.93593 Coding 0.82279 0.97378 0.89194 Genic 0.95669 0.89530 0.92498 Reverse for Sequence contig_15739 - ID 273 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5105 0 0 0 Non Coding 5105 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_15789 - ID 274 Forward for Sequence contig_15789 - ID 274 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6998 0 0 0 Non Coding 8045 10 9 9 UTR 9 291 11 1 Phase 0 4 224 0 4 Coding 6 2 698 39 Phase 1 5 3 225 0 Intron 1 1 2 712 Phase 2 6 0 3 224 Precision Recall F1 Precision Recall F1 Intergenic 0.99772 1.00000 0.99886 Non Coding 0.99814 0.99653 0.99733 UTR 0.98980 0.93269 0.96040 Phase 0 0.94515 0.96552 0.95522 Coding 0.98172 0.93691 0.95879 Phase 1 0.94937 0.96567 0.95745 Intron 0.94681 0.99441 0.97003 Phase 2 0.94515 0.96137 0.95319 Subgenic 0.96377 0.96509 0.96443 Coding 0.94655 0.96418 0.95529 Genic 0.96813 0.95939 0.96374 Reverse for Sequence contig_15789 - ID 274 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8771 0 0 0 Non Coding 8771 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_16125 - ID 275 Forward for Sequence contig_16125 - ID 275 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5313 0 0 0 Non Coding 5611 18 16 17 UTR 87 47 0 0 Phase 0 9 146 2 0 Coding 59 1 495 14 Phase 1 5 0 147 1 Intron 72 0 0 38 Phase 2 6 1 0 147 Precision Recall F1 Precision Recall F1 Intergenic 0.96059 1.00000 0.97990 Non Coding 0.99645 0.99099 0.99371 UTR 0.97917 0.35075 0.51648 Phase 0 0.88485 0.92994 0.90683 Coding 1.00000 0.86995 0.93045 Phase 1 0.89091 0.96078 0.92453 Intron 0.73077 0.34545 0.46914 Phase 2 0.89091 0.95455 0.92163 Subgenic 0.97441 0.78498 0.86949 Coding 0.88889 0.94828 0.91762 Genic 0.97479 0.71341 0.82386 Reverse for Sequence contig_16125 - ID 275 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3850 0 0 0 Non Coding 5534 1 1 2 UTR 2 133 8 5 Phase 0 3 194 0 0 Coding 0 6 577 0 Phase 1 2 0 194 0 Intron 0 1 0 1544 Phase 2 2 0 0 193 Precision Recall F1 Precision Recall F1 Intergenic 0.99948 1.00000 0.99974 Non Coding 0.99874 0.99928 0.99901 UTR 0.95000 0.89865 0.92361 Phase 0 0.99487 0.98477 0.98980 Coding 0.98632 0.98971 0.98801 Phase 1 0.99487 0.98980 0.99233 Intron 0.99677 0.99935 0.99806 Phase 2 0.98974 0.98974 0.98974 Subgenic 0.99391 0.99671 0.99531 Coding 0.99316 0.98810 0.99062 Genic 0.99120 0.99033 0.99077 BP_Extractor for Sequence contig_16149 - ID 276 Forward for Sequence contig_16149 - ID 276 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7940 0 0 0 Non Coding 8261 0 0 0 UTR 10 0 0 0 Phase 0 36 0 0 0 Coding 195 0 0 0 Phase 1 33 0 0 0 Intron 220 0 0 0 Phase 2 35 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94919 1.00000 0.97393 Non Coding 0.98757 1.00000 0.99374 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_16149 - ID 276 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8365 0 0 0 Non Coding 8365 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_16223 - ID 277 Forward for Sequence contig_16223 - ID 277 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4974 0 0 0 Non Coding 4974 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_16223 - ID 277 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3685 0 162 116 Non Coding 4159 72 78 75 UTR 2 111 3 1 Phase 0 1 199 0 0 Coding 1 0 639 0 Phase 1 0 0 193 0 Intron 14 3 9 228 Phase 2 1 0 0 196 Precision Recall F1 Precision Recall F1 Intergenic 0.99541 0.92985 0.96151 Non Coding 0.99952 0.94868 0.97343 UTR 0.97368 0.94872 0.96104 Phase 0 0.73432 0.99500 0.84501 Coding 0.78598 0.99844 0.87956 Phase 1 0.71218 1.00000 0.83190 Intron 0.66087 0.89764 0.76127 Phase 2 0.72325 0.99492 0.83761 Subgenic 0.74870 0.96980 0.84503 Coding 0.72325 0.99661 0.83820 Genic 0.76887 0.96736 0.85677 BP_Extractor for Sequence contig_16257 - ID 278 Forward for Sequence contig_16257 - ID 278 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3039 0 15 9 Non Coding 12711 50 47 46 UTR 3 157 1 4 Phase 0 7 506 2 0 Coding 66 2 1653 9 Phase 1 9 0 509 2 Intron 470 1 5 8975 Phase 2 8 2 0 510 Precision Recall F1 Precision Recall F1 Intergenic 0.84936 0.99216 0.91522 Non Coding 0.99812 0.98888 0.99347 UTR 0.98125 0.95152 0.96615 Phase 0 0.90681 0.98252 0.94315 Coding 0.98746 0.95549 0.97121 Phase 1 0.91219 0.97885 0.94434 Intron 0.99755 0.94963 0.97301 Phase 2 0.91398 0.98077 0.94620 Subgenic 0.99597 0.95054 0.97273 Coding 0.91099 0.98071 0.94456 Genic 0.99575 0.95056 0.97263 Reverse for Sequence contig_16257 - ID 278 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14409 0 0 0 Non Coding 14409 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_16286 - ID 279 Forward for Sequence contig_16286 - ID 279 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5273 9 13 26 Non Coding 5848 157 140 159 UTR 30 350 19 0 Phase 0 4 177 0 0 Coding 12 11 960 15 Phase 1 5 0 194 0 Intron 72 0 10 63 Phase 2 4 0 0 175 Precision Recall F1 Precision Recall F1 Intergenic 0.97884 0.99098 0.98487 Non Coding 0.99778 0.92766 0.96145 UTR 0.94595 0.87719 0.91027 Phase 0 0.52994 0.97790 0.68738 Coding 0.95808 0.96192 0.96000 Phase 1 0.58084 0.97487 0.72795 Intron 0.60577 0.43448 0.50602 Phase 2 0.52395 0.97765 0.68226 Subgenic 0.92495 0.89501 0.90974 Coding 0.54491 0.97674 0.69955 Genic 0.93022 0.89040 0.90987 Reverse for Sequence contig_16286 - ID 279 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6863 0 0 0 Non Coding 6863 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_16294 - ID 280 Forward for Sequence contig_16294 - ID 280 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8156 0 0 0 Non Coding 8156 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_16294 - ID 280 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5772 2 0 0 Non Coding 6464 10 11 11 UTR 6 151 5 26 Phase 0 12 540 0 0 Coding 11 3 1635 56 Phase 1 16 0 539 0 Intron 1 12 10 466 Phase 2 14 0 0 539 Precision Recall F1 Precision Recall F1 Intergenic 0.99689 0.99965 0.99827 Non Coding 0.99354 0.99507 0.99431 UTR 0.89881 0.80319 0.84831 Phase 0 0.98182 0.97826 0.98004 Coding 0.99091 0.95894 0.97466 Phase 1 0.98000 0.97117 0.97557 Intron 0.85036 0.95297 0.89875 Phase 2 0.98000 0.97468 0.97733 Subgenic 0.95587 0.95761 0.95674 Coding 0.98061 0.97470 0.97764 Genic 0.95182 0.94542 0.94861 BP_Extractor for Sequence contig_16340 - ID 281 Forward for Sequence contig_16340 - ID 281 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4037 5 0 0 Non Coding 4203 14 21 16 UTR 5 122 2 5 Phase 0 6 385 0 0 Coding 0 0 1195 24 Phase 1 6 0 378 0 Intron 0 0 0 23 Phase 2 6 0 0 383 Precision Recall F1 Precision Recall F1 Intergenic 0.99876 0.99876 0.99876 Non Coding 0.99574 0.98801 0.99186 UTR 0.96063 0.91045 0.93487 Phase 0 0.96491 0.98465 0.97468 Coding 0.99833 0.98031 0.98924 Phase 1 0.94737 0.98438 0.96552 Intron 0.44231 1.00000 0.61333 Phase 2 0.95990 0.98458 0.97208 Subgenic 0.97518 0.98068 0.97792 Coding 0.95739 0.98454 0.97078 Genic 0.97384 0.97384 0.97384 Reverse for Sequence contig_16340 - ID 281 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1715 5 0 0 Non Coding 3232 5 2 3 UTR 5 372 7 0 Phase 0 1 723 1 0 Coding 2 0 2176 2 Phase 1 0 0 725 1 Intron 9 0 1 1124 Phase 2 1 0 0 724 Precision Recall F1 Precision Recall F1 Intergenic 0.99076 0.99709 0.99391 Non Coding 0.99938 0.99692 0.99815 UTR 0.98674 0.96875 0.97766 Phase 0 0.99313 0.99724 0.99518 Coding 0.99634 0.99817 0.99725 Phase 1 0.99588 0.99862 0.99725 Intron 0.99822 0.99118 0.99469 Phase 2 0.99451 0.99862 0.99656 Subgenic 0.99698 0.99578 0.99638 Coding 0.99451 0.99816 0.99633 Genic 0.99593 0.99297 0.99445 BP_Extractor for Sequence contig_16345 - ID 282 Forward for Sequence contig_16345 - ID 282 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7454 1 1 0 Non Coding 10707 22 25 24 UTR 19 210 9 8 Phase 0 34 722 0 0 Coding 50 0 2219 27 Phase 1 21 0 719 0 Intron 9 0 3 3010 Phase 2 26 0 0 720 Precision Recall F1 Precision Recall F1 Intergenic 0.98964 0.99973 0.99466 Non Coding 0.99249 0.99341 0.99295 UTR 0.99526 0.85366 0.91904 Phase 0 0.97043 0.95503 0.96267 Coding 0.99418 0.96646 0.98012 Phase 1 0.96640 0.97162 0.96900 Intron 0.98851 0.99603 0.99225 Phase 2 0.96774 0.96515 0.96644 Subgenic 0.99090 0.98326 0.98707 Coding 0.96819 0.96387 0.96603 Genic 0.99107 0.97753 0.98426 Reverse for Sequence contig_16345 - ID 282 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11357 21 0 0 Non Coding 12616 4 2 4 UTR 18 245 6 3 Phase 0 6 126 0 0 Coding 0 16 384 5 Phase 1 3 0 128 0 Intron 0 0 0 965 Phase 2 5 0 0 126 Precision Recall F1 Precision Recall F1 Intergenic 0.99842 0.99815 0.99829 Non Coding 0.99889 0.99921 0.99905 UTR 0.86879 0.90074 0.88448 Phase 0 0.96923 0.95455 0.96183 Coding 0.98462 0.94815 0.96604 Phase 1 0.98462 0.97710 0.98084 Intron 0.99178 1.00000 0.99587 Phase 2 0.96923 0.96183 0.96552 Subgenic 0.98973 0.98467 0.98719 Coding 0.97436 0.96447 0.96939 Genic 0.96900 0.97077 0.96988 BP_Extractor for Sequence contig_16446 - ID 283 Forward for Sequence contig_16446 - ID 283 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3111 0 0 0 Non Coding 3390 0 0 0 UTR 138 0 0 0 Phase 0 236 0 0 0 Coding 847 0 0 0 Phase 1 236 0 0 0 Intron 6 0 0 0 Phase 2 240 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.75841 1.00000 0.86261 Non Coding 0.82643 1.00000 0.90497 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_16446 - ID 283 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4102 0 0 0 Non Coding 4102 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_16498 - ID 284 Forward for Sequence contig_16498 - ID 284 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3423 0 0 0 Non Coding 3423 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_16498 - ID 284 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3423 0 0 0 Non Coding 3423 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_16629 - ID 285 Forward for Sequence contig_16629 - ID 285 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27675 14 117 365 Non Coding 33008 149 172 161 UTR 20 301 49 29 Phase 0 24 1341 2 0 Coding 46 8 4298 75 Phase 1 25 0 1319 2 Intron 182 8 15 4360 Phase 2 26 3 0 1330 Precision Recall F1 Precision Recall F1 Intergenic 0.99112 0.98239 0.98674 Non Coding 0.99773 0.98561 0.99163 UTR 0.90937 0.75439 0.82466 Phase 0 0.89819 0.98098 0.93776 Coding 0.95959 0.97086 0.96519 Phase 1 0.88346 0.97994 0.92920 Intron 0.90288 0.95509 0.92825 Phase 2 0.89082 0.97866 0.93268 Subgenic 0.93017 0.96286 0.94623 Coding 0.89082 0.97986 0.93322 Genic 0.92945 0.95400 0.94157 Reverse for Sequence contig_16629 - ID 285 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 30867 33 6 2 Non Coding 33074 74 88 78 UTR 79 386 24 3 Phase 0 351 1068 2 0 Coding 1150 12 3358 38 Phase 1 358 0 1054 2 Intron 84 26 44 1450 Phase 2 347 2 0 1064 Precision Recall F1 Precision Recall F1 Intergenic 0.95920 0.99867 0.97854 Non Coding 0.96906 0.99280 0.98078 UTR 0.84464 0.78455 0.81349 Phase 0 0.93357 0.75158 0.83275 Coding 0.97844 0.73673 0.84055 Phase 1 0.92133 0.74540 0.82408 Intron 0.97120 0.90399 0.93639 Phase 2 0.93007 0.75301 0.83223 Subgenic 0.97624 0.78027 0.86732 Coding 0.92832 0.75000 0.82969 Genic 0.96507 0.78058 0.86308 BP_Extractor for Sequence contig_16654 - ID 286 Forward for Sequence contig_16654 - ID 286 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4896 1 0 0 Non Coding 5389 6 6 7 UTR 4 318 9 0 Phase 0 34 1178 0 0 Coding 19 135 3543 0 Phase 1 36 0 1178 0 Intron 113 0 0 0 Phase 2 27 0 0 1177 Precision Recall F1 Precision Recall F1 Intergenic 0.97297 0.99980 0.98620 Non Coding 0.98232 0.99649 0.98935 UTR 0.70044 0.96073 0.81019 Phase 0 0.99493 0.97195 0.98331 Coding 0.99747 0.95834 0.97751 Phase 1 0.99493 0.97035 0.98249 Intron NaN 0.00000 0.00000 Phase 2 0.99409 0.97757 0.98576 Subgenic 0.99747 0.92992 0.96251 Coding 0.99465 0.97328 0.98385 Genic 0.96380 0.93238 0.94783 Reverse for Sequence contig_16654 - ID 286 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6898 1 20 40 Non Coding 7073 29 20 20 UTR 18 24 11 0 Phase 0 11 617 0 0 Coding 36 8 1906 1 Phase 1 7 0 626 0 Intron 13 0 1 61 Phase 2 9 0 0 626 Precision Recall F1 Precision Recall F1 Intergenic 0.99038 0.99123 0.99081 Non Coding 0.99620 0.99034 0.99326 UTR 0.72727 0.45283 0.55814 Phase 0 0.95511 0.98248 0.96860 Coding 0.98349 0.97693 0.98020 Phase 1 0.96904 0.98894 0.97889 Intron 0.59804 0.81333 0.68927 Phase 2 0.96904 0.98583 0.97736 Subgenic 0.96422 0.97088 0.96754 Coding 0.96440 0.98576 0.97496 Genic 0.96044 0.95767 0.95906 BP_Extractor for Sequence contig_16762 - ID 287 Forward for Sequence contig_16762 - ID 287 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6813 6 68 18 Non Coding 8132 110 97 117 UTR 4 342 15 24 Phase 0 8 537 0 0 Coding 0 2 1839 63 Phase 1 13 0 550 0 Intron 0 0 19 891 Phase 2 10 0 0 530 Precision Recall F1 Precision Recall F1 Intergenic 0.99941 0.98668 0.99300 Non Coding 0.99620 0.96168 0.97864 UTR 0.97714 0.88831 0.93061 Phase 0 0.82998 0.98532 0.90101 Coding 0.94745 0.96586 0.95657 Phase 1 0.85008 0.97691 0.90909 Intron 0.89458 0.97912 0.93494 Phase 2 0.81917 0.98148 0.89301 Subgenic 0.92952 0.97015 0.94940 Coding 0.83308 0.98119 0.90109 Genic 0.93459 0.96030 0.94727 Reverse for Sequence contig_16762 - ID 287 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10104 0 0 0 Non Coding 10103 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99990 1.00000 0.99995 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN BP_Extractor for Sequence contig_16763 - ID 288 Forward for Sequence contig_16763 - ID 288 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3901 2 100 15 Non Coding 8372 158 166 165 UTR 15 285 15 0 Phase 0 7 559 0 0 Coding 25 4 1997 35 Phase 1 9 1 551 0 Intron 563 11 42 3543 Phase 2 11 0 1 553 Precision Recall F1 Precision Recall F1 Intergenic 0.86612 0.97088 0.91551 Non Coding 0.99679 0.94481 0.97010 UTR 0.94371 0.90476 0.92382 Phase 0 0.77855 0.98763 0.87072 Coding 0.92711 0.96895 0.94757 Phase 1 0.76741 0.98217 0.86161 Intron 0.98608 0.85189 0.91409 Phase 2 0.77019 0.97876 0.86204 Subgenic 0.96398 0.89068 0.92588 Coding 0.77205 0.98286 0.86479 Genic 0.96297 0.89135 0.92578 Reverse for Sequence contig_16763 - ID 288 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10553 0 0 0 Non Coding 10553 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_16824 - ID 289 Forward for Sequence contig_16824 - ID 289 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 49351 11 120 23 Non Coding 51817 366 350 352 UTR 288 337 29 30 Phase 0 501 1908 4 8 Coding 2122 20 6633 92 Phase 1 481 6 1923 3 Intron 268 10 67 742 Phase 2 495 3 6 1920 Precision Recall F1 Precision Recall F1 Intergenic 0.94853 0.99689 0.97211 Non Coding 0.97229 0.97981 0.97603 UTR 0.89153 0.49269 0.63465 Phase 0 0.83574 0.78810 0.81122 Coding 0.96846 0.74805 0.84411 Phase 1 0.84231 0.79693 0.81899 Intron 0.83653 0.68261 0.75177 Phase 2 0.84100 0.79208 0.81581 Subgenic 0.95334 0.74091 0.83380 Coding 0.83968 0.79237 0.81534 Genic 0.95046 0.72495 0.82253 Reverse for Sequence contig_16824 - ID 289 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 51728 17 0 0 Non Coding 54194 74 68 71 UTR 163 1108 18 6 Phase 0 461 1448 0 0 Coding 1656 0 4504 72 Phase 1 474 0 1454 0 Intron 155 4 44 668 Phase 2 448 0 0 1451 Precision Recall F1 Precision Recall F1 Intergenic 0.96324 0.99967 0.98112 Non Coding 0.97512 0.99609 0.98549 UTR 0.98140 0.85560 0.91419 Phase 0 0.95138 0.75851 0.84407 Coding 0.98642 0.72272 0.83423 Phase 1 0.95532 0.75415 0.84290 Intron 0.89544 0.76693 0.82622 Phase 2 0.95335 0.76409 0.84829 Subgenic 0.97364 0.72814 0.83319 Coding 0.95335 0.75889 0.84508 Genic 0.97500 0.74780 0.84642 BP_Extractor for Sequence contig_16825 - ID 290 Forward for Sequence contig_16825 - ID 290 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2695 0 0 0 Non Coding 2825 0 0 0 UTR 21 0 0 0 Phase 0 15 0 0 0 Coding 148 0 0 0 Phase 1 15 0 0 0 Intron 3 0 0 0 Phase 2 12 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94001 1.00000 0.96908 Non Coding 0.98535 1.00000 0.99262 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_16825 - ID 290 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2867 0 0 0 Non Coding 2867 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_16831 - ID 291 Forward for Sequence contig_16831 - ID 291 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9816 0 0 0 Non Coding 11638 17 15 16 UTR 14 228 14 10 Phase 0 7 360 0 0 Coding 18 0 1106 9 Phase 1 7 0 363 0 Intron 123 0 14 1441 Phase 2 7 1 0 362 Precision Recall F1 Precision Recall F1 Intergenic 0.98445 1.00000 0.99217 Non Coding 0.99820 0.99589 0.99704 UTR 1.00000 0.85714 0.92308 Phase 0 0.95238 0.98093 0.96644 Coding 0.97531 0.97617 0.97574 Phase 1 0.96032 0.98108 0.97059 Intron 0.98699 0.91318 0.94865 Phase 2 0.95767 0.97838 0.96791 Subgenic 0.98188 0.93951 0.96023 Coding 0.95679 0.98013 0.96832 Genic 0.98335 0.93215 0.95706 Reverse for Sequence contig_16831 - ID 291 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10911 22 0 55 Non Coding 11770 3 3 3 UTR 24 396 9 2 Phase 0 8 332 0 0 Coding 38 8 996 0 Phase 1 6 0 332 0 Intron 5 2 0 325 Phase 2 4 0 0 332 Precision Recall F1 Precision Recall F1 Intergenic 0.99390 0.99299 0.99344 Non Coding 0.99847 0.99924 0.99885 UTR 0.92523 0.91879 0.92200 Phase 0 0.99104 0.97647 0.98370 Coding 0.99104 0.95585 0.97313 Phase 1 0.99104 0.98225 0.98663 Intron 0.85079 0.97892 0.91036 Phase 2 0.99104 0.98810 0.98957 Subgenic 0.95242 0.96143 0.95690 Coding 0.99104 0.98225 0.98663 Genic 0.94601 0.95125 0.94862 BP_Extractor for Sequence contig_16833 - ID 292 Forward for Sequence contig_16833 - ID 292 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 30837 1 0 0 Non Coding 32531 53 58 56 UTR 233 111 6 21 Phase 0 538 780 3 6 Coding 2009 16 2503 59 Phase 1 571 6 777 2 Intron 226 1 17 684 Phase 2 558 3 4 778 Precision Recall F1 Precision Recall F1 Intergenic 0.92590 0.99997 0.96151 Non Coding 0.95125 0.99489 0.97258 UTR 0.86047 0.29919 0.44400 Phase 0 0.92637 0.58779 0.71923 Coding 0.99089 0.54567 0.70378 Phase 1 0.92280 0.57301 0.70701 Intron 0.89529 0.73707 0.80851 Phase 2 0.92399 0.57930 0.71213 Subgenic 0.96869 0.57788 0.72391 Coding 0.92439 0.57998 0.71276 Genic 0.96461 0.56031 0.70887 Reverse for Sequence contig_16833 - ID 292 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27571 21 6 47 Non Coding 30213 118 102 119 UTR 199 612 15 12 Phase 0 476 1604 1 0 Coding 1690 19 5084 113 Phase 1 417 0 1621 2 Intron 95 43 67 1130 Phase 2 446 2 0 1603 Precision Recall F1 Precision Recall F1 Intergenic 0.93287 0.99732 0.96402 Non Coding 0.95756 0.98890 0.97298 UTR 0.88058 0.73031 0.79843 Phase 0 0.93039 0.77078 0.84310 Coding 0.98299 0.73617 0.84186 Phase 1 0.94026 0.79461 0.86132 Intron 0.86790 0.84644 0.85703 Phase 2 0.92981 0.78157 0.84927 Subgenic 0.95984 0.75403 0.84458 Coding 0.93349 0.78224 0.85120 Genic 0.95216 0.75184 0.84023 BP_Extractor for Sequence contig_16980 - ID 293 Forward for Sequence contig_16980 - ID 293 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13364 0 0 0 Non Coding 13364 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_16980 - ID 293 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8948 8 0 0 Non Coding 12437 10 8 5 UTR 21 212 0 0 Phase 0 173 125 0 0 Coding 489 7 404 1 Phase 1 181 0 127 0 Intron 5 0 1 3268 Phase 2 168 0 0 130 Precision Recall F1 Precision Recall F1 Intergenic 0.94558 0.99911 0.97161 Non Coding 0.95972 0.99815 0.97856 UTR 0.93392 0.90987 0.92174 Phase 0 0.92593 0.41946 0.57737 Coding 0.99753 0.44839 0.61868 Phase 1 0.94074 0.41234 0.57336 Intron 0.99969 0.99817 0.99893 Phase 2 0.96296 0.43624 0.60046 Subgenic 0.99946 0.87952 0.93566 Coding 0.94321 0.42257 0.58365 Genic 0.99564 0.88113 0.93489 BP_Extractor for Sequence contig_16982 - ID 294 Forward for Sequence contig_16982 - ID 294 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22718 6 155 109 Non Coding 28018 788 747 793 UTR 51 1057 44 17 Phase 0 63 3101 2 4 Coding 135 14 11352 297 Phase 1 55 3 3141 3 Intron 433 27 131 3331 Phase 2 59 2 4 3094 Precision Recall F1 Precision Recall F1 Intergenic 0.97348 0.98825 0.98081 Non Coding 0.99372 0.92328 0.95721 UTR 0.95743 0.90419 0.93005 Phase 0 0.79635 0.97823 0.87797 Coding 0.97175 0.96220 0.96695 Phase 1 0.80663 0.98095 0.88529 Intron 0.88732 0.84931 0.86790 Phase 2 0.79456 0.97942 0.87736 Subgenic 0.95122 0.93403 0.94255 Coding 0.79918 0.97954 0.88021 Genic 0.95163 0.93197 0.94170 Reverse for Sequence contig_16982 - ID 294 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 36492 0 0 1 Non Coding 38229 53 56 55 UTR 134 13 5 0 Phase 0 317 188 0 0 Coding 2159 0 715 3 Phase 1 297 0 185 0 Intron 200 0 3 152 Phase 2 311 0 0 186 Precision Recall F1 Precision Recall F1 Intergenic 0.93605 0.99997 0.96696 Non Coding 0.97638 0.99573 0.98596 UTR 1.00000 0.08553 0.15758 Phase 0 0.78008 0.37228 0.50402 Coding 0.98893 0.24852 0.39722 Phase 1 0.76763 0.38382 0.51176 Intron 0.97436 0.42817 0.59491 Phase 2 0.77178 0.37425 0.50407 Subgenic 0.98635 0.26825 0.42180 Coding 0.77317 0.37668 0.50657 Genic 0.98655 0.26005 0.41160 BP_Extractor for Sequence contig_17201 - ID 295 Forward for Sequence contig_17201 - ID 295 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31284 5 92 308 Non Coding 39331 315 328 331 UTR 15 512 71 21 Phase 0 34 1360 35 2 Coding 51 24 4869 129 Phase 1 29 2 1346 35 Intron 48 35 101 6989 Phase 2 27 34 2 1343 Precision Recall F1 Precision Recall F1 Intergenic 0.99637 0.98722 0.99177 Non Coding 0.99772 0.97583 0.98665 UTR 0.88889 0.82714 0.85690 Phase 0 0.79486 0.95038 0.86569 Coding 0.94857 0.95979 0.95414 Phase 1 0.78667 0.95326 0.86199 Intron 0.93850 0.97435 0.95609 Phase 2 0.78492 0.95519 0.86173 Subgenic 0.94261 0.96832 0.95529 Coding 0.78882 0.95293 0.86314 Genic 0.94026 0.96152 0.95077 Reverse for Sequence contig_17201 - ID 295 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33631 13 3 0 Non Coding 38923 238 234 250 UTR 101 851 70 9 Phase 0 46 1586 10 0 Coding 833 7 5359 13 Phase 1 40 0 1590 11 Intron 36 1 70 3557 Phase 2 43 10 0 1573 Precision Recall F1 Precision Recall F1 Intergenic 0.97197 0.99952 0.98555 Non Coding 0.99670 0.98179 0.98919 UTR 0.97592 0.82541 0.89438 Phase 0 0.86478 0.96590 0.91254 Coding 0.97401 0.86269 0.91497 Phase 1 0.86696 0.96892 0.91511 Intron 0.99385 0.97080 0.98219 Phase 2 0.85769 0.96740 0.90925 Subgenic 0.98183 0.90279 0.94066 Coding 0.86314 0.96741 0.91230 Genic 0.98131 0.89548 0.93643 BP_Extractor for Sequence contig_17215 - ID 296 Forward for Sequence contig_17215 - ID 296 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19020 8 2 0 Non Coding 24479 55 64 60 UTR 219 407 4 14 Phase 0 646 1154 0 0 Coding 2526 0 3587 50 Phase 1 644 0 1145 0 Intron 283 10 34 3882 Phase 2 650 0 0 1149 Precision Recall F1 Precision Recall F1 Intergenic 0.86266 0.99947 0.92604 Non Coding 0.92657 0.99274 0.95851 UTR 0.95765 0.63199 0.76146 Phase 0 0.95451 0.64111 0.76703 Coding 0.98897 0.58202 0.73279 Phase 1 0.94706 0.64002 0.76384 Intron 0.98378 0.92231 0.95205 Phase 2 0.95037 0.63869 0.76396 Subgenic 0.98627 0.72011 0.83243 Coding 0.95065 0.63994 0.76495 Genic 0.98475 0.71496 0.82844 Reverse for Sequence contig_17215 - ID 296 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23909 5 0 0 Non Coding 25828 13 16 15 UTR 1 524 17 0 Phase 0 9 1385 0 0 Coding 7 31 4166 0 Phase 1 6 0 1382 0 Intron 2 7 11 1366 Phase 2 9 0 0 1383 Precision Recall F1 Precision Recall F1 Intergenic 0.99958 0.99979 0.99969 Non Coding 0.99907 0.99830 0.99869 UTR 0.92416 0.96679 0.94500 Phase 0 0.99070 0.99354 0.99212 Coding 0.99332 0.99096 0.99214 Phase 1 0.98856 0.99568 0.99210 Intron 1.00000 0.98557 0.99273 Phase 2 0.98927 0.99353 0.99140 Subgenic 0.99496 0.98962 0.99229 Coding 0.98951 0.99425 0.99187 Genic 0.98841 0.98761 0.98801 BP_Extractor for Sequence contig_17216 - ID 297 Forward for Sequence contig_17216 - ID 297 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5920 2 78 56 Non Coding 8230 37 41 37 UTR 3 176 5 1 Phase 0 0 239 0 0 Coding 0 1 742 2 Phase 1 2 0 235 0 Intron 9 0 3 2062 Phase 2 0 0 0 239 Precision Recall F1 Precision Recall F1 Intergenic 0.99798 0.97754 0.98765 Non Coding 0.99976 0.98622 0.99294 UTR 0.98324 0.95135 0.96703 Phase 0 0.86594 1.00000 0.92816 Coding 0.89614 0.99597 0.94342 Phase 1 0.85145 0.99156 0.91618 Intron 0.97218 0.99421 0.98308 Phase 2 0.86594 1.00000 0.92816 Subgenic 0.95083 0.99468 0.97226 Coding 0.86111 0.99720 0.92417 Genic 0.95269 0.99201 0.97195 Reverse for Sequence contig_17216 - ID 297 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9060 0 0 0 Non Coding 9060 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_17234 - ID 298 Forward for Sequence contig_17234 - ID 298 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9044 0 0 0 Non Coding 9044 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_17234 - ID 298 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9043 0 0 0 Non Coding 9041 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99989 1.00000 0.99994 Non Coding 0.99967 1.00000 0.99983 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_17313 - ID 299 Forward for Sequence contig_17313 - ID 299 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24121 7 44 0 Non Coding 26392 207 209 171 UTR 56 300 12 0 Phase 0 19 680 0 16 Coding 76 3 2642 42 Phase 1 16 16 679 0 Intron 2 0 11 1833 Phase 2 13 0 15 716 Precision Recall F1 Precision Recall F1 Intergenic 0.99448 0.99789 0.99618 Non Coding 0.99818 0.97824 0.98811 UTR 0.96774 0.81522 0.88496 Phase 0 0.75305 0.95105 0.84054 Coding 0.97527 0.95621 0.96564 Phase 1 0.75194 0.95499 0.84139 Intron 0.97760 0.99296 0.98522 Phase 2 0.79291 0.96237 0.86946 Subgenic 0.97622 0.97093 0.97357 Coding 0.76597 0.95622 0.85058 Genic 0.97568 0.95941 0.96748 Reverse for Sequence contig_17313 - ID 299 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21995 0 0 0 Non Coding 27592 19 25 27 UTR 13 292 11 16 Phase 0 10 492 0 0 Coding 14 0 1518 25 Phase 1 7 0 486 0 Intron 54 0 4 5207 Phase 2 7 0 0 484 Precision Recall F1 Precision Recall F1 Intergenic 0.99633 1.00000 0.99816 Non Coding 0.99913 0.99743 0.99828 UTR 1.00000 0.87952 0.93590 Phase 0 0.96282 0.98008 0.97137 Coding 0.99022 0.97495 0.98252 Phase 1 0.95108 0.98580 0.96813 Intron 0.99219 0.98898 0.99058 Phase 2 0.94716 0.98574 0.96607 Subgenic 0.99174 0.98578 0.98875 Coding 0.95369 0.98385 0.96853 Genic 0.99208 0.98085 0.98643 BP_Extractor for Sequence contig_17319 - ID 300 Forward for Sequence contig_17319 - ID 300 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21959 7 48 157 Non Coding 25779 69 73 73 UTR 0 395 7 19 Phase 0 5 371 0 0 Coding 4 3 1213 19 Phase 1 3 0 367 0 Intron 3 0 52 3225 Phase 2 4 0 0 367 Precision Recall F1 Precision Recall F1 Intergenic 0.99968 0.99044 0.99504 Non Coding 0.99953 0.99173 0.99562 UTR 0.97531 0.93824 0.95642 Phase 0 0.84318 0.98670 0.90931 Coding 0.91894 0.97902 0.94803 Phase 1 0.83409 0.99189 0.90617 Intron 0.94298 0.98323 0.96269 Phase 2 0.83409 0.98922 0.90506 Subgenic 0.93629 0.98208 0.95863 Coding 0.83712 0.98926 0.90685 Genic 0.93936 0.97834 0.95845 Reverse for Sequence contig_17319 - ID 300 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20632 8 96 40 Non Coding 23126 397 436 395 UTR 72 243 23 6 Phase 0 52 876 0 0 Coding 441 9 3668 6 Phase 1 57 0 837 0 Intron 272 7 32 1556 Phase 2 57 0 0 878 Precision Recall F1 Precision Recall F1 Intergenic 0.96335 0.99307 0.97798 Non Coding 0.99287 0.94958 0.97074 UTR 0.91011 0.70640 0.79542 Phase 0 0.68814 0.94397 0.79600 Coding 0.96046 0.88943 0.92358 Phase 1 0.65750 0.93624 0.77250 Intron 0.96766 0.83342 0.89554 Phase 2 0.68971 0.93904 0.79529 Subgenic 0.96259 0.87197 0.91505 Coding 0.67845 0.93979 0.78802 Genic 0.96013 0.86298 0.90897 BP_Extractor for Sequence contig_17457 - ID 301 Forward for Sequence contig_17457 - ID 301 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26553 0 0 0 Non Coding 26557 0 0 0 UTR 5 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99977 1.00000 0.99989 Non Coding 0.99992 1.00000 0.99996 UTR NaN 0.00000 0.00000 Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_17457 - ID 301 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14127 6 5 39 Non Coding 23914 19 22 20 UTR 17 136 12 10 Phase 0 10 849 3 0 Coding 13 1 2568 42 Phase 1 9 0 846 4 Intron 25 6 28 9524 Phase 2 13 3 0 847 Precision Recall F1 Precision Recall F1 Intergenic 0.99612 0.99647 0.99630 Non Coding 0.99866 0.99746 0.99806 UTR 0.91275 0.77714 0.83951 Phase 0 0.97474 0.98492 0.97980 Coding 0.98278 0.97866 0.98071 Phase 1 0.97130 0.98487 0.97803 Intron 0.99054 0.99384 0.99219 Phase 2 0.97245 0.98146 0.97693 Subgenic 0.98888 0.99058 0.98973 Coding 0.97283 0.98375 0.97826 Genic 0.98796 0.98756 0.98776 BP_Extractor for Sequence contig_17521 - ID 302 Forward for Sequence contig_17521 - ID 302 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 32295 8 2 0 Non Coding 39069 128 122 137 UTR 382 674 13 7 Phase 0 512 2888 0 0 Coding 3469 25 8991 139 Phase 1 492 0 2894 0 Intron 953 6 42 2639 Phase 2 524 0 0 2879 Precision Recall F1 Precision Recall F1 Intergenic 0.87051 0.99969 0.93064 Non Coding 0.96236 0.99019 0.97608 UTR 0.94530 0.62639 0.75349 Phase 0 0.95756 0.84941 0.90025 Coding 0.99370 0.71221 0.82973 Phase 1 0.95955 0.85470 0.90409 Intron 0.94758 0.72500 0.82148 Phase 2 0.95458 0.84602 0.89702 Subgenic 0.98284 0.71508 0.82785 Coding 0.95723 0.85003 0.90045 Genic 0.98071 0.70957 0.82340 Reverse for Sequence contig_17521 - ID 302 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 41832 3 135 10 Non Coding 44842 219 214 206 UTR 313 522 5 17 Phase 0 308 1074 0 0 Coding 1035 12 3716 122 Phase 1 313 0 1079 1 Intron 43 43 23 1814 Phase 2 303 0 0 1086 Precision Recall F1 Precision Recall F1 Intergenic 0.96782 0.99647 0.98194 Non Coding 0.97981 0.98595 0.98287 UTR 0.90000 0.60910 0.72651 Phase 0 0.83063 0.77713 0.80299 Coding 0.95798 0.76070 0.84801 Phase 1 0.83449 0.77459 0.80343 Intron 0.92410 0.94332 0.93361 Phase 2 0.83991 0.78186 0.80984 Subgenic 0.94659 0.81228 0.87431 Coding 0.83501 0.77786 0.80542 Genic 0.94239 0.78956 0.85923 BP_Extractor for Sequence contig_17704 - ID 303 Forward for Sequence contig_17704 - ID 303 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 63504 1 127 7 Non Coding 64722 86 89 93 UTR 199 71 16 0 Phase 0 382 171 0 0 Coding 1170 0 622 16 Phase 1 391 0 168 0 Intron 189 0 6 726 Phase 2 388 0 0 164 Precision Recall F1 Precision Recall F1 Intergenic 0.97605 0.99788 0.98685 Non Coding 0.98238 0.99588 0.98908 UTR 0.98611 0.24825 0.39665 Phase 0 0.66537 0.30922 0.42222 Coding 0.80674 0.34403 0.48236 Phase 1 0.65370 0.30054 0.41176 Intron 0.96929 0.78827 0.86946 Phase 2 0.63813 0.29710 0.40544 Subgenic 0.88684 0.49395 0.63450 Coding 0.65240 0.30228 0.41314 Genic 0.89133 0.47065 0.61602 Reverse for Sequence contig_17704 - ID 303 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 57013 5 6 2 Non Coding 63364 64 73 82 UTR 87 370 27 0 Phase 0 116 919 0 1 Coding 559 1 2907 36 Phase 1 110 1 911 0 Intron 107 9 12 5513 Phase 2 112 0 0 901 Precision Recall F1 Precision Recall F1 Intergenic 0.98696 0.99977 0.99333 Non Coding 0.99469 0.99656 0.99562 UTR 0.96104 0.76446 0.85155 Phase 0 0.93394 0.88707 0.90990 Coding 0.98476 0.82986 0.90070 Phase 1 0.92581 0.89139 0.90828 Intron 0.99315 0.97731 0.98517 Phase 2 0.91565 0.88944 0.90235 Subgenic 0.99024 0.92082 0.95427 Coding 0.92514 0.88929 0.90686 Genic 0.98897 0.91296 0.94945 BP_Extractor for Sequence contig_17761 - ID 304 Forward for Sequence contig_17761 - ID 304 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11716 1 0 0 Non Coding 14104 30 31 30 UTR 89 171 14 24 Phase 0 28 642 0 0 Coding 69 3 1989 98 Phase 1 26 0 641 0 Intron 326 8 13 1681 Phase 2 28 0 0 642 Precision Recall F1 Precision Recall F1 Intergenic 0.96033 0.99991 0.97972 Non Coding 0.99422 0.99359 0.99390 UTR 0.93443 0.57383 0.71102 Phase 0 0.95536 0.95821 0.95678 Coding 0.98661 0.92126 0.95281 Phase 1 0.95387 0.96102 0.95743 Intron 0.93233 0.82890 0.87758 Phase 2 0.95536 0.95821 0.95678 Subgenic 0.96098 0.87652 0.91681 Coding 0.95486 0.95914 0.95700 Genic 0.95977 0.85641 0.90515 Reverse for Sequence contig_17761 - ID 304 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13576 9 0 17 Non Coding 14568 14 8 8 UTR 18 334 5 1 Phase 0 18 515 0 0 Coding 21 16 1573 16 Phase 1 13 0 521 0 Intron 27 6 9 574 Phase 2 16 0 0 521 Precision Recall F1 Precision Recall F1 Intergenic 0.99516 0.99809 0.99662 Non Coding 0.99678 0.99794 0.99736 UTR 0.91507 0.93296 0.92393 Phase 0 0.97353 0.96623 0.96987 Coding 0.99118 0.96740 0.97915 Phase 1 0.98488 0.97566 0.98024 Intron 0.94408 0.93182 0.93791 Phase 2 0.98488 0.97020 0.97749 Subgenic 0.97813 0.95763 0.96777 Coding 0.98110 0.97070 0.97587 Genic 0.96914 0.95423 0.96163 BP_Extractor for Sequence contig_17798 - ID 305 Forward for Sequence contig_17798 - ID 305 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3517 5 7 0 Non Coding 5357 86 98 95 UTR 23 173 18 2 Phase 0 11 470 0 1 Coding 9 4 1617 42 Phase 1 11 0 456 0 Intron 0 0 25 1616 Phase 2 12 0 1 460 Precision Recall F1 Precision Recall F1 Intergenic 0.99098 0.99660 0.99378 Non Coding 0.99369 0.95050 0.97162 UTR 0.95055 0.80093 0.86935 Phase 0 0.84532 0.97510 0.90559 Coding 0.97001 0.96711 0.96855 Phase 1 0.82162 0.97645 0.89237 Intron 0.97349 0.98477 0.97910 Phase 2 0.82734 0.97252 0.89407 Subgenic 0.97175 0.97585 0.97380 Coding 0.83143 0.97468 0.89738 Genic 0.97065 0.96515 0.96789 Reverse for Sequence contig_17798 - ID 305 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7058 0 0 0 Non Coding 7058 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_17812 - ID 306 Forward for Sequence contig_17812 - ID 306 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8455 0 0 0 Non Coding 8455 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_17812 - ID 306 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8455 0 0 0 Non Coding 8455 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_17825 - ID 307 Forward for Sequence contig_17825 - ID 307 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20916 0 0 0 Non Coding 20916 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_17825 - ID 307 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7669 7 3 0 Non Coding 16055 64 62 72 UTR 4 385 27 22 Phase 0 11 1529 16 0 Coding 7 7 4761 27 Phase 1 12 0 1531 17 Intron 7 6 36 7948 Phase 2 11 16 0 1520 Precision Recall F1 Precision Recall F1 Intergenic 0.99766 0.99870 0.99818 Non Coding 0.99789 0.98782 0.99283 UTR 0.95062 0.87900 0.91340 Phase 0 0.95028 0.98265 0.96619 Coding 0.98633 0.99146 0.98889 Phase 1 0.95152 0.98141 0.96624 Intron 0.99387 0.99387 0.99387 Phase 2 0.94469 0.98255 0.96324 Subgenic 0.99103 0.99297 0.99200 Coding 0.94883 0.98220 0.96523 Genic 0.98980 0.98920 0.98950 BP_Extractor for Sequence contig_17836 - ID 308 Forward for Sequence contig_17836 - ID 308 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6668 1 2 176 Non Coding 9109 22 25 26 UTR 22 316 4 10 Phase 0 7 684 0 0 Coding 9 7 2107 15 Phase 1 10 0 681 0 Intron 14 1 5 1894 Phase 2 7 0 0 680 Precision Recall F1 Precision Recall F1 Intergenic 0.99330 0.97386 0.98348 Non Coding 0.99737 0.99205 0.99470 UTR 0.97231 0.89773 0.93353 Phase 0 0.96884 0.98987 0.97924 Coding 0.99481 0.98550 0.99013 Phase 1 0.96459 0.98553 0.97495 Intron 0.90406 0.98955 0.94487 Phase 2 0.96317 0.98981 0.97631 Subgenic 0.94968 0.98741 0.96818 Coding 0.96553 0.98840 0.97683 Genic 0.95130 0.98025 0.96556 Reverse for Sequence contig_17836 - ID 308 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10140 0 0 0 Non Coding 10805 0 0 0 UTR 46 0 0 0 Phase 0 147 0 0 0 Coding 519 0 0 0 Phase 1 152 0 0 0 Intron 546 0 0 0 Phase 2 147 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90125 1.00000 0.94806 Non Coding 0.96036 1.00000 0.97978 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_17855 - ID 309 Forward for Sequence contig_17855 - ID 309 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5776 0 0 0 Non Coding 5776 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_17855 - ID 309 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5776 0 0 0 Non Coding 5776 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_17859 - ID 310 Forward for Sequence contig_17859 - ID 310 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4405 0 0 0 Non Coding 6126 18 12 13 UTR 8 127 0 0 Phase 0 13 373 0 2 Coding 5 1 1172 41 Phase 1 14 2 380 0 Intron 0 0 7 1580 Phase 2 14 0 1 378 Precision Recall F1 Precision Recall F1 Intergenic 0.99706 1.00000 0.99853 Non Coding 0.99335 0.99303 0.99319 UTR 0.99219 0.94074 0.96578 Phase 0 0.94911 0.96134 0.95519 Coding 0.99406 0.96144 0.97748 Phase 1 0.96692 0.95960 0.96324 Intron 0.97471 0.99559 0.98504 Phase 2 0.96183 0.96183 0.96183 Subgenic 0.98286 0.98076 0.98181 Coding 0.95929 0.96092 0.96010 Genic 0.98327 0.97892 0.98109 Reverse for Sequence contig_17859 - ID 310 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7346 0 0 0 Non Coding 7346 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_18034 - ID 311 Forward for Sequence contig_18034 - ID 311 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7658 0 0 0 Non Coding 7658 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_18034 - ID 311 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3864 0 0 0 Non Coding 5446 89 93 90 UTR 0 167 8 7 Phase 0 6 641 0 0 Coding 0 0 2165 20 Phase 1 9 0 637 0 Intron 0 0 17 1410 Phase 2 7 0 0 640 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99598 0.95243 0.97372 UTR 1.00000 0.91758 0.95702 Phase 0 0.87808 0.99073 0.93101 Coding 0.98858 0.99085 0.98971 Phase 1 0.87260 0.98607 0.92587 Intron 0.98121 0.98809 0.98464 Phase 2 0.87671 0.98918 0.92956 Subgenic 0.98566 0.98976 0.98771 Coding 0.87580 0.98866 0.92881 Genic 0.98629 0.98629 0.98629 BP_Extractor for Sequence contig_18056 - ID 312 Forward for Sequence contig_18056 - ID 312 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4183 11 118 0 Non Coding 4536 75 75 85 UTR 24 212 6 0 Phase 0 6 462 0 0 Coding 33 0 1484 27 Phase 1 6 0 461 0 Intron 7 0 2 59 Phase 2 8 0 0 452 Precision Recall F1 Precision Recall F1 Intergenic 0.98493 0.97008 0.97745 Non Coding 0.99561 0.95074 0.97266 UTR 0.95067 0.87603 0.91183 Phase 0 0.86034 0.98718 0.91940 Coding 0.92174 0.96114 0.94103 Phase 1 0.86007 0.98715 0.91924 Intron 0.68605 0.86765 0.76623 Phase 2 0.84171 0.98261 0.90672 Subgenic 0.90979 0.95720 0.93289 Coding 0.85404 0.98566 0.91514 Genic 0.91454 0.94660 0.93029 Reverse for Sequence contig_18056 - ID 312 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6166 0 0 0 Non Coding 6166 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_18143 - ID 313 Forward for Sequence contig_18143 - ID 313 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6862 0 0 0 Non Coding 6862 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_18143 - ID 313 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6465 0 0 0 Non Coding 6576 0 0 0 UTR 30 0 0 0 Phase 0 86 0 0 0 Coding 367 0 0 0 Phase 1 105 0 0 0 Intron 0 0 0 0 Phase 2 95 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94215 1.00000 0.97021 Non Coding 0.95832 1.00000 0.97872 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_18211 - ID 314 Forward for Sequence contig_18211 - ID 314 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8110 0 0 0 Non Coding 8110 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_18211 - ID 314 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8008 0 0 0 Non Coding 8060 0 0 0 UTR 5 0 0 0 Phase 0 17 0 0 0 Coding 91 0 0 0 Phase 1 20 0 0 0 Intron 6 0 0 0 Phase 2 13 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98742 1.00000 0.99367 Non Coding 0.99383 1.00000 0.99691 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_18212 - ID 315 Forward for Sequence contig_18212 - ID 315 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10228 0 0 0 Non Coding 10226 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99980 1.00000 0.99990 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN Reverse for Sequence contig_18212 - ID 315 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9601 0 0 0 Non Coding 9720 0 0 0 UTR 107 0 0 0 Phase 0 171 0 0 0 Coding 516 0 0 0 Phase 1 167 0 0 0 Intron 4 0 0 0 Phase 2 170 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93870 1.00000 0.96838 Non Coding 0.95033 1.00000 0.97453 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_18292 - ID 316 Forward for Sequence contig_18292 - ID 316 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23301 7 26 0 Non Coding 24784 88 97 121 UTR 42 1102 19 0 Phase 0 30 1383 45 0 Coding 92 9 4493 21 Phase 1 37 0 1374 45 Intron 5 10 10 298 Phase 2 36 45 0 1350 Precision Recall F1 Precision Recall F1 Intergenic 0.99407 0.99859 0.99632 Non Coding 0.99586 0.98780 0.99182 UTR 0.97695 0.94755 0.96203 Phase 0 0.91227 0.94856 0.93006 Coding 0.98791 0.97356 0.98068 Phase 1 0.90633 0.94368 0.92463 Intron 0.93417 0.92260 0.92835 Phase 2 0.89050 0.94340 0.91619 Subgenic 0.98438 0.97023 0.97726 Coding 0.90303 0.94522 0.92365 Genic 0.98299 0.96591 0.97437 Reverse for Sequence contig_18292 - ID 316 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28667 0 0 0 Non Coding 28943 0 0 0 UTR 50 0 0 0 Phase 0 163 0 0 0 Coding 567 0 0 0 Phase 1 169 0 0 0 Intron 151 0 0 0 Phase 2 160 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97391 1.00000 0.98678 Non Coding 0.98329 1.00000 0.99157 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_18381 - ID 317 Forward for Sequence contig_18381 - ID 317 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9590 0 0 0 Non Coding 9685 0 0 0 UTR 60 0 0 0 Phase 0 268 0 0 0 Coding 839 0 0 0 Phase 1 267 0 0 0 Intron 0 0 0 0 Phase 2 269 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91429 1.00000 0.95523 Non Coding 0.92335 1.00000 0.96015 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_18381 - ID 317 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10468 0 0 0 Non Coding 10480 0 0 0 UTR 2 0 0 0 Phase 0 3 0 0 0 Coding 19 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99800 1.00000 0.99900 Non Coding 0.99914 1.00000 0.99957 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_18429 - ID 318 Forward for Sequence contig_18429 - ID 318 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5166 0 0 0 Non Coding 5173 0 0 0 UTR 8 0 0 0 Phase 0 7 0 0 0 Coding 13 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99595 1.00000 0.99797 Non Coding 0.99730 1.00000 0.99865 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_18429 - ID 318 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5187 0 0 0 Non Coding 5187 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_18430 - ID 319 Forward for Sequence contig_18430 - ID 319 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18417 0 0 0 Non Coding 18602 1 0 1 UTR 79 85 0 0 Phase 0 246 206 0 0 Coding 759 1 621 0 Phase 1 248 0 207 0 Intron 0 0 0 0 Phase 2 245 0 0 206 Precision Recall F1 Precision Recall F1 Intergenic 0.95648 1.00000 0.97776 Non Coding 0.96179 0.99989 0.98047 UTR 0.98837 0.51829 0.68000 Phase 0 0.99517 0.45575 0.62519 Coding 1.00000 0.44967 0.62038 Phase 1 1.00000 0.45495 0.62538 Intron NaN NaN NaN Phase 2 0.99517 0.45676 0.62614 Subgenic 1.00000 0.44967 0.62038 Coding 0.99678 0.45582 0.62557 Genic 0.99859 0.45696 0.62700 Reverse for Sequence contig_18430 - ID 319 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11394 0 0 78 Non Coding 16542 36 38 37 UTR 11 306 30 7 Phase 0 1 1102 0 0 Coding 23 0 3365 8 Phase 1 2 0 1100 0 Intron 12 10 19 4699 Phase 2 3 0 0 1101 Precision Recall F1 Precision Recall F1 Intergenic 0.99598 0.99320 0.99459 Non Coding 0.99964 0.99333 0.99648 UTR 0.96835 0.86441 0.91343 Phase 0 0.96837 0.99909 0.98349 Coding 0.98565 0.99087 0.98825 Phase 1 0.96661 0.99819 0.98214 Intron 0.98059 0.99135 0.98594 Phase 2 0.96749 0.99728 0.98216 Subgenic 0.98270 0.99115 0.98690 Coding 0.96749 0.99819 0.98260 Genic 0.98216 0.98587 0.98401 BP_Extractor for Sequence contig_18491 - ID 320 Forward for Sequence contig_18491 - ID 320 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25692 0 0 0 Non Coding 28402 0 0 0 UTR 113 0 0 0 Phase 0 544 0 0 0 Coding 3925 0 0 0 Phase 1 554 0 0 0 Intron 344 0 0 0 Phase 2 574 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85429 1.00000 0.92142 Non Coding 0.94440 1.00000 0.97141 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_18491 - ID 320 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28508 7 0 0 Non Coding 28689 2 3 3 UTR 28 137 3 0 Phase 0 6 453 0 0 Coding 24 0 1362 0 Phase 1 6 0 452 0 Intron 5 0 0 0 Phase 2 8 0 0 452 Precision Recall F1 Precision Recall F1 Intergenic 0.99800 0.99975 0.99888 Non Coding 0.99930 0.99972 0.99951 UTR 0.95139 0.81548 0.87821 Phase 0 0.99560 0.98693 0.99125 Coding 0.99780 0.98268 0.99019 Phase 1 0.99341 0.98690 0.99014 Intron NaN 0.00000 0.00000 Phase 2 0.99341 0.98261 0.98798 Subgenic 0.99780 0.97915 0.98839 Coding 0.99414 0.98548 0.98979 Genic 0.99337 0.96151 0.97718 BP_Extractor for Sequence contig_18492 - ID 321 Forward for Sequence contig_18492 - ID 321 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26778 5 0 0 Non Coding 33427 89 88 88 UTR 5 316 7 10 Phase 0 11 406 0 0 Coding 0 1 1405 69 Phase 1 10 0 407 0 Intron 0 0 73 6273 Phase 2 9 0 0 407 Precision Recall F1 Precision Recall F1 Intergenic 0.99981 0.99981 0.99981 Non Coding 0.99910 0.99213 0.99561 UTR 0.98137 0.93491 0.95758 Phase 0 0.82020 0.97362 0.89035 Coding 0.94613 0.95254 0.94932 Phase 1 0.82222 0.97602 0.89254 Intron 0.98756 0.98850 0.98803 Phase 2 0.82222 0.97837 0.89352 Subgenic 0.97971 0.98172 0.98071 Coding 0.82155 0.97600 0.89214 Genic 0.97978 0.97978 0.97978 Reverse for Sequence contig_18492 - ID 321 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18141 7 75 183 Non Coding 28424 374 369 380 UTR 30 354 47 42 Phase 0 35 1744 13 0 Coding 45 4 6129 240 Phase 1 47 0 1749 14 Intron 12 34 145 9454 Phase 2 40 14 1 1738 Precision Recall F1 Precision Recall F1 Intergenic 0.99523 0.98560 0.99039 Non Coding 0.99573 0.96199 0.97857 UTR 0.88722 0.74841 0.81193 Phase 0 0.81801 0.97321 0.88889 Coding 0.95826 0.95497 0.95661 Phase 1 0.82036 0.96630 0.88737 Intron 0.95312 0.98020 0.96647 Phase 2 0.81520 0.96933 0.88561 Subgenic 0.95513 0.97012 0.96257 Coding 0.81785 0.96960 0.88729 Genic 0.95351 0.96378 0.95862 BP_Extractor for Sequence contig_18541 - ID 322 Forward for Sequence contig_18541 - ID 322 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27174 36 258 173 Non Coding 33674 678 715 735 UTR 57 937 14 25 Phase 0 49 4025 0 0 Coding 75 16 13762 159 Phase 1 53 0 3988 0 Intron 214 4 75 4953 Phase 2 47 0 0 3968 Precision Recall F1 Precision Recall F1 Intergenic 0.98743 0.98310 0.98526 Non Coding 0.99559 0.94056 0.96730 UTR 0.94361 0.90707 0.92498 Phase 0 0.85584 0.98797 0.91717 Coding 0.97541 0.98216 0.97877 Phase 1 0.84797 0.98688 0.91217 Intron 0.93277 0.94415 0.93842 Phase 2 0.84372 0.98829 0.91030 Subgenic 0.96375 0.97180 0.96776 Coding 0.84917 0.98772 0.91322 Genic 0.96277 0.96851 0.96563 Reverse for Sequence contig_18541 - ID 322 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 37847 25 225 23 Non Coding 42086 244 240 253 UTR 21 1033 9 35 Phase 0 14 1692 2 0 Coding 3 6 5543 56 Phase 1 13 0 1694 4 Intron 5 2 31 3068 Phase 2 11 0 0 1679 Precision Recall F1 Precision Recall F1 Intergenic 0.99923 0.99284 0.99603 Non Coding 0.99910 0.98279 0.99088 UTR 0.96904 0.94080 0.95471 Phase 0 0.87397 0.99063 0.92865 Coding 0.95437 0.98841 0.97109 Phase 1 0.87500 0.99006 0.92898 Intron 0.96417 0.98777 0.97583 Phase 2 0.86725 0.99349 0.92609 Subgenic 0.95784 0.98818 0.97277 Coding 0.87207 0.99139 0.92791 Genic 0.95903 0.98288 0.97081 BP_Extractor for Sequence contig_18562 - ID 323 Forward for Sequence contig_18562 - ID 323 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8356 0 0 0 Non Coding 8227 0 0 0 UTR 38 0 0 0 Phase 0 121 0 0 0 Coding 214 0 0 0 Phase 1 130 0 0 0 Intron 1 0 0 0 Phase 2 131 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97061 1.00000 0.98509 Non Coding 0.95563 1.00000 0.97731 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_18562 - ID 323 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8593 0 0 0 Non Coding 8599 0 0 0 UTR 9 0 0 0 Phase 0 2 0 0 0 Coding 7 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99814 1.00000 0.99907 Non Coding 0.99884 1.00000 0.99942 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_18634 - ID 324 Forward for Sequence contig_18634 - ID 324 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2136 0 0 0 Non Coding 2136 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_18634 - ID 324 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2136 0 0 0 Non Coding 2136 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_18677 - ID 325 Forward for Sequence contig_18677 - ID 325 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5023 0 0 0 Non Coding 5409 0 0 0 UTR 190 0 0 0 Phase 0 466 0 0 0 Coding 1539 0 0 0 Phase 1 480 0 0 0 Intron 81 0 0 0 Phase 2 478 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.73511 1.00000 0.84733 Non Coding 0.79160 1.00000 0.88368 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_18677 - ID 325 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4415 0 0 0 Non Coding 4942 0 0 0 UTR 222 0 0 0 Phase 0 628 0 0 0 Coding 2156 0 0 0 Phase 1 633 0 0 0 Intron 40 0 0 0 Phase 2 630 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.64613 1.00000 0.78503 Non Coding 0.72325 1.00000 0.83941 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_18810 - ID 326 Forward for Sequence contig_18810 - ID 326 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6482 0 10 28 Non Coding 10734 16 15 17 UTR 17 190 4 6 Phase 0 11 237 0 0 Coding 119 1 739 3 Phase 1 12 0 238 0 Intron 54 2 6 3863 Phase 2 8 0 0 236 Precision Recall F1 Precision Recall F1 Intergenic 0.97152 0.99417 0.98272 Non Coding 0.99712 0.99555 0.99633 UTR 0.98446 0.87558 0.92683 Phase 0 0.93676 0.95565 0.94611 Coding 0.97365 0.85731 0.91178 Phase 1 0.94071 0.95200 0.94632 Intron 0.99051 0.98420 0.98735 Phase 2 0.93281 0.96721 0.94970 Subgenic 0.98777 0.96135 0.97438 Coding 0.93676 0.95822 0.94737 Genic 0.98763 0.95763 0.97240 Reverse for Sequence contig_18810 - ID 326 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11524 0 0 0 Non Coding 11524 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_18846 - ID 327 Forward for Sequence contig_18846 - ID 327 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16780 0 0 0 Non Coding 16780 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99988 1.00000 0.99994 Non Coding 0.99988 1.00000 0.99994 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_18846 - ID 327 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14942 1 0 4 Non Coding 15951 0 2 1 UTR 57 98 4 1 Phase 0 157 112 0 0 Coding 784 0 332 0 Phase 1 173 0 110 0 Intron 124 0 0 435 Phase 2 165 0 0 111 Precision Recall F1 Precision Recall F1 Intergenic 0.93933 0.99967 0.96856 Non Coding 0.96990 0.99981 0.98463 UTR 0.98990 0.61250 0.75676 Phase 0 1.00000 0.41636 0.58793 Coding 0.98810 0.29749 0.45730 Phase 1 0.98214 0.38869 0.55696 Intron 0.98864 0.77818 0.87087 Phase 2 0.99107 0.40217 0.57216 Subgenic 0.98840 0.45791 0.62587 Coding 0.99107 0.40217 0.57216 Genic 0.98857 0.47139 0.63838 BP_Extractor for Sequence contig_18863 - ID 328 Forward for Sequence contig_18863 - ID 328 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11059 0 0 0 Non Coding 11059 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_18863 - ID 328 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11059 0 0 0 Non Coding 11059 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_18864 - ID 329 Forward for Sequence contig_18864 - ID 329 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9630 0 0 0 Non Coding 9945 0 0 0 UTR 64 0 0 0 Phase 0 54 0 0 0 Coding 296 0 0 0 Phase 1 62 0 0 0 Intron 132 0 0 0 Phase 2 61 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95139 1.00000 0.97509 Non Coding 0.98251 1.00000 0.99118 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_18864 - ID 329 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10111 0 0 0 Non Coding 10116 0 0 0 UTR 3 0 0 0 Phase 0 2 0 0 0 Coding 8 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99891 1.00000 0.99946 Non Coding 0.99941 1.00000 0.99970 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_18991 - ID 330 Forward for Sequence contig_18991 - ID 330 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9190 14 36 21 Non Coding 11279 236 241 241 UTR 38 307 23 1 Phase 0 10 791 0 0 Coding 72 3 3013 0 Phase 1 8 0 786 0 Intron 7 2 9 1650 Phase 2 8 0 0 786 Precision Recall F1 Precision Recall F1 Intergenic 0.98743 0.99233 0.98988 Non Coding 0.99770 0.94015 0.96807 UTR 0.94172 0.83198 0.88345 Phase 0 0.77020 0.98752 0.86543 Coding 0.97793 0.97571 0.97682 Phase 1 0.76534 0.98992 0.86326 Intron 0.98684 0.98921 0.98802 Phase 2 0.76534 0.98992 0.86326 Subgenic 0.98106 0.98045 0.98076 Coding 0.76696 0.98912 0.86399 Genic 0.97854 0.96976 0.97413 Reverse for Sequence contig_18991 - ID 330 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14026 0 0 0 Non Coding 14081 0 0 0 UTR 38 0 0 0 Phase 0 107 0 0 0 Coding 319 0 0 0 Phase 1 95 0 0 0 Intron 3 0 0 0 Phase 2 103 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97498 1.00000 0.98733 Non Coding 0.97880 1.00000 0.98929 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19033 - ID 331 Forward for Sequence contig_19033 - ID 331 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18004 0 0 0 Non Coding 18003 0 0 0 UTR 7 0 0 0 Phase 0 5 0 0 0 Coding 13 0 0 0 Phase 1 7 0 0 0 Intron 0 0 0 0 Phase 2 9 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99889 1.00000 0.99944 Non Coding 0.99883 1.00000 0.99942 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_19033 - ID 331 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15531 0 0 0 Non Coding 16483 0 0 0 UTR 221 0 0 0 Phase 0 524 0 0 0 Coding 1767 0 0 0 Phase 1 504 0 0 0 Intron 505 0 0 0 Phase 2 513 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.86168 1.00000 0.92570 Non Coding 0.91450 1.00000 0.95534 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19066 - ID 332 Forward for Sequence contig_19066 - ID 332 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9589 0 0 0 Non Coding 9608 0 0 0 UTR 21 0 0 0 Phase 0 5 0 0 0 Coding 12 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99657 1.00000 0.99828 Non Coding 0.99855 1.00000 0.99927 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_19066 - ID 332 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4873 10 138 57 Non Coding 7633 120 120 123 UTR 21 342 8 2 Phase 0 12 516 14 0 Coding 23 42 1768 29 Phase 1 11 0 518 16 Intron 50 10 42 2207 Phase 2 10 16 0 513 Precision Recall F1 Precision Recall F1 Intergenic 0.98108 0.95963 0.97023 Non Coding 0.99570 0.95460 0.97472 UTR 0.84653 0.91689 0.88031 Phase 0 0.79141 0.95203 0.86432 Coding 0.90389 0.94952 0.92614 Phase 1 0.79448 0.95046 0.86550 Intron 0.96166 0.95583 0.95873 Phase 2 0.78681 0.95176 0.86146 Subgenic 0.93507 0.95301 0.94396 Coding 0.79090 0.95141 0.86376 Genic 0.92739 0.95004 0.93858 BP_Extractor for Sequence contig_19087 - ID 333 Forward for Sequence contig_19087 - ID 333 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9598 1 95 0 Non Coding 9810 35 43 50 UTR 8 98 7 0 Phase 0 3 669 0 0 Coding 30 0 2010 0 Phase 1 3 0 661 0 Intron 0 0 0 85 Phase 2 4 0 0 654 Precision Recall F1 Precision Recall F1 Intergenic 0.99606 0.99010 0.99307 Non Coding 0.99898 0.98712 0.99302 UTR 0.98990 0.86726 0.92453 Phase 0 0.95028 0.99554 0.97238 Coding 0.95170 0.98529 0.96821 Phase 1 0.93892 0.99548 0.96637 Intron 1.00000 1.00000 1.00000 Phase 2 0.92898 0.99392 0.96035 Subgenic 0.95357 0.98588 0.96946 Coding 0.93939 0.99498 0.96639 Genic 0.95514 0.97989 0.96736 Reverse for Sequence contig_19087 - ID 333 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11932 0 0 0 Non Coding 11932 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_19115 - ID 334 Forward for Sequence contig_19115 - ID 334 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20875 0 0 0 Non Coding 20905 0 0 0 UTR 19 0 0 0 Phase 0 15 0 0 0 Coding 55 0 0 0 Phase 1 17 0 0 0 Intron 2 0 0 0 Phase 2 14 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99637 1.00000 0.99818 Non Coding 0.99780 1.00000 0.99890 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_19115 - ID 334 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18831 0 0 0 Non Coding 19408 0 0 0 UTR 133 0 0 0 Phase 0 505 0 0 0 Coding 1785 0 0 0 Phase 1 509 0 0 0 Intron 202 0 0 0 Phase 2 529 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89881 1.00000 0.94671 Non Coding 0.92635 1.00000 0.96177 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19128 - ID 335 Forward for Sequence contig_19128 - ID 335 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6659 0 0 0 Non Coding 6625 0 0 0 UTR 25 0 0 0 Phase 0 132 0 0 0 Coding 315 0 0 0 Phase 1 125 0 0 0 Intron 8 0 0 0 Phase 2 125 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95034 1.00000 0.97454 Non Coding 0.94548 1.00000 0.97198 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_19128 - ID 335 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7007 0 0 0 Non Coding 7007 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_19236 - ID 336 Forward for Sequence contig_19236 - ID 336 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9765 0 0 0 Non Coding 10738 0 0 0 UTR 46 0 0 0 Phase 0 256 0 0 0 Coding 981 0 0 0 Phase 1 273 0 0 0 Intron 733 0 0 0 Phase 2 258 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84729 1.00000 0.91733 Non Coding 0.93171 1.00000 0.96465 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_19236 - ID 336 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8480 55 0 0 Non Coding 10672 2 2 2 UTR 43 436 0 1 Phase 0 3 279 0 0 Coding 19 1 837 4 Phase 1 4 0 279 0 Intron 16 5 6 1622 Phase 2 3 0 0 279 Precision Recall F1 Precision Recall F1 Intergenic 0.99089 0.99356 0.99222 Non Coding 0.99906 0.99944 0.99925 UTR 0.87726 0.90833 0.89253 Phase 0 0.99288 0.98936 0.99112 Coding 0.99288 0.97213 0.98239 Phase 1 0.99288 0.98587 0.98936 Intron 0.99693 0.98363 0.99023 Phase 2 0.99288 0.98936 0.99112 Subgenic 0.99555 0.97968 0.98755 Coding 0.99288 0.98819 0.99053 Genic 0.97573 0.96823 0.97197 BP_Extractor for Sequence contig_19256 - ID 337 Forward for Sequence contig_19256 - ID 337 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15406 14 21 4 Non Coding 16420 77 77 77 UTR 11 50 15 3 Phase 0 8 640 0 0 Coding 16 0 2102 19 Phase 1 11 0 640 0 Intron 0 0 13 928 Phase 2 12 0 0 640 Precision Recall F1 Precision Recall F1 Intergenic 0.99825 0.99747 0.99786 Non Coding 0.99812 0.98613 0.99209 UTR 0.78125 0.63291 0.69930 Phase 0 0.89261 0.98765 0.93773 Coding 0.97722 0.98362 0.98041 Phase 1 0.89261 0.98310 0.93567 Intron 0.97275 0.98618 0.97942 Phase 2 0.89261 0.98160 0.93499 Subgenic 0.97585 0.98441 0.98011 Coding 0.89261 0.98411 0.93613 Genic 0.97192 0.97561 0.97376 Reverse for Sequence contig_19256 - ID 337 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18090 0 0 0 Non Coding 18272 0 0 0 UTR 12 0 0 0 Phase 0 106 0 0 0 Coding 481 0 0 0 Phase 1 106 0 0 0 Intron 19 0 0 0 Phase 2 118 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97248 1.00000 0.98605 Non Coding 0.98226 1.00000 0.99105 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19317 - ID 338 Forward for Sequence contig_19317 - ID 338 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9932 0 0 0 Non Coding 10273 0 0 0 UTR 72 0 0 0 Phase 0 120 0 0 0 Coding 444 0 0 0 Phase 1 126 0 0 0 Intron 193 0 0 0 Phase 2 122 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93337 1.00000 0.96554 Non Coding 0.96542 1.00000 0.98240 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_19317 - ID 338 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10611 0 0 0 Non Coding 10626 0 0 0 UTR 7 0 0 0 Phase 0 5 0 0 0 Coding 22 0 0 0 Phase 1 4 0 0 0 Intron 1 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99718 1.00000 0.99859 Non Coding 0.99859 1.00000 0.99929 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19318 - ID 339 Forward for Sequence contig_19318 - ID 339 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5652 0 0 0 Non Coding 7732 1 1 1 UTR 0 132 0 0 Phase 0 0 99 0 0 Coding 0 1 297 0 Phase 1 1 0 99 0 Intron 2 1 3 1945 Phase 2 0 0 0 99 Precision Recall F1 Precision Recall F1 Intergenic 0.99965 1.00000 0.99982 Non Coding 0.99987 0.99961 0.99974 UTR 0.98507 1.00000 0.99248 Phase 0 0.99000 1.00000 0.99497 Coding 0.99000 0.99664 0.99331 Phase 1 0.99000 0.99000 0.99000 Intron 1.00000 0.99692 0.99846 Phase 2 0.99000 1.00000 0.99497 Subgenic 0.99866 0.99689 0.99777 Coding 0.99000 0.99664 0.99331 Genic 0.99790 0.99706 0.99748 Reverse for Sequence contig_19318 - ID 339 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7253 0 0 0 Non Coding 7295 0 0 0 UTR 18 0 0 0 Phase 0 246 0 0 0 Coding 762 0 0 0 Phase 1 246 0 0 0 Intron 0 0 0 0 Phase 2 246 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90290 1.00000 0.94897 Non Coding 0.90813 1.00000 0.95185 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19319 - ID 340 Forward for Sequence contig_19319 - ID 340 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16976 3 0 0 Non Coding 17295 5 4 5 UTR 25 218 0 0 Phase 0 5 150 0 0 Coding 17 3 465 4 Phase 1 7 0 151 0 Intron 0 0 0 67 Phase 2 6 0 0 150 Precision Recall F1 Precision Recall F1 Intergenic 0.99753 0.99982 0.99868 Non Coding 0.99896 0.99919 0.99908 UTR 0.97321 0.89712 0.93362 Phase 0 0.96774 0.96774 0.96774 Coding 1.00000 0.95092 0.97484 Phase 1 0.97419 0.95570 0.96486 Intron 0.94366 1.00000 0.97101 Phase 2 0.96774 0.96154 0.96463 Subgenic 0.99254 0.95683 0.97436 Coding 0.96989 0.96162 0.96574 Genic 0.98684 0.93867 0.96216 Reverse for Sequence contig_19319 - ID 340 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11598 39 8 41 Non Coding 14517 154 162 155 UTR 35 395 10 21 Phase 0 11 923 0 0 Coding 21 20 3188 75 Phase 1 10 0 915 0 Intron 32 17 25 2253 Phase 2 9 0 0 922 Precision Recall F1 Precision Recall F1 Intergenic 0.99247 0.99247 0.99247 Non Coding 0.99794 0.96857 0.98304 UTR 0.83864 0.85683 0.84764 Phase 0 0.85701 0.98822 0.91795 Coding 0.98669 0.96489 0.97567 Phase 1 0.84958 0.98919 0.91409 Intron 0.94268 0.96820 0.95527 Phase 2 0.85608 0.99033 0.91833 Subgenic 0.96798 0.96626 0.96712 Coding 0.85422 0.98925 0.91679 Genic 0.95798 0.95798 0.95798 BP_Extractor for Sequence contig_19367 - ID 341 Forward for Sequence contig_19367 - ID 341 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4916 1 17 0 Non Coding 5101 18 19 21 UTR 78 37 5 0 Phase 0 53 493 0 0 Coding 185 4 1507 0 Phase 1 51 0 491 0 Intron 37 0 3 0 Phase 2 53 0 0 490 Precision Recall F1 Precision Recall F1 Intergenic 0.94248 0.99635 0.96867 Non Coding 0.97014 0.98876 0.97936 UTR 0.88095 0.30833 0.45679 Phase 0 0.96477 0.90293 0.93283 Coding 0.98368 0.88856 0.93371 Phase 1 0.96275 0.90590 0.93346 Intron NaN 0.00000 0.00000 Phase 2 0.95890 0.90239 0.92979 Subgenic 0.98368 0.86809 0.92228 Coding 0.96214 0.90374 0.93203 Genic 0.98094 0.83190 0.90029 Reverse for Sequence contig_19367 - ID 341 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6778 0 0 0 Non Coding 6787 0 0 0 UTR 1 0 0 0 Phase 0 0 0 0 0 Coding 11 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99823 1.00000 0.99912 Non Coding 0.99956 1.00000 0.99978 UTR NaN 0.00000 0.00000 Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19369 - ID 342 Forward for Sequence contig_19369 - ID 342 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 45086 5 199 244 Non Coding 47209 313 303 321 UTR 108 244 8 23 Phase 0 85 1236 2 3 Coding 524 10 4393 93 Phase 1 97 1 1245 2 Intron 261 12 59 863 Phase 2 82 3 3 1227 Precision Recall F1 Precision Recall F1 Intergenic 0.98058 0.99016 0.98535 Non Coding 0.99444 0.98054 0.98744 UTR 0.90037 0.63708 0.74618 Phase 0 0.79588 0.93213 0.85863 Coding 0.94291 0.87510 0.90774 Phase 1 0.80167 0.92565 0.85921 Intron 0.70564 0.72218 0.71381 Phase 2 0.79008 0.93308 0.85565 Subgenic 0.89357 0.84570 0.86898 Coding 0.79588 0.93026 0.85784 Genic 0.89387 0.83359 0.86268 Reverse for Sequence contig_19369 - ID 342 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33502 11 0 7 Non Coding 43970 230 247 244 UTR 169 1058 21 21 Phase 0 291 2207 1 0 Coding 998 13 7215 121 Phase 1 282 0 2190 2 Intron 286 14 78 8618 Phase 2 275 1 0 2192 Precision Recall F1 Precision Recall F1 Intergenic 0.95843 0.99946 0.97852 Non Coding 0.98108 0.98387 0.98247 UTR 0.96533 0.83373 0.89471 Phase 0 0.90525 0.88315 0.89407 Coding 0.98646 0.86438 0.92140 Phase 1 0.89828 0.88521 0.89169 Intron 0.98300 0.95798 0.97033 Phase 2 0.89910 0.88817 0.89360 Subgenic 0.98458 0.91293 0.94740 Coding 0.90088 0.88550 0.89312 Genic 0.98335 0.90753 0.94392 BP_Extractor for Sequence contig_19441 - ID 343 Forward for Sequence contig_19441 - ID 343 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3329 0 0 0 Non Coding 3329 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_19441 - ID 343 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1031 1 44 54 Non Coding 1507 164 170 180 UTR 70 94 14 3 Phase 0 21 418 6 0 Coding 29 2 1680 99 Phase 1 21 0 410 6 Intron 0 0 23 185 Phase 2 19 5 1 401 Precision Recall F1 Precision Recall F1 Intergenic 0.91239 0.91239 0.91239 Non Coding 0.96110 0.74567 0.83979 UTR 0.96907 0.51934 0.67626 Phase 0 0.71210 0.93933 0.81008 Coding 0.95400 0.92818 0.94091 Phase 1 0.69847 0.93822 0.80078 Intron 0.54252 0.88942 0.67395 Phase 2 0.68313 0.94131 0.79171 Subgenic 0.88725 0.92418 0.90534 Coding 0.69790 0.93960 0.80091 Genic 0.89086 0.89086 0.89086 BP_Extractor for Sequence contig_19545 - ID 344 Forward for Sequence contig_19545 - ID 344 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21201 4 113 71 Non Coding 22278 232 223 234 UTR 43 219 11 27 Phase 0 30 909 6 0 Coding 111 6 3292 111 Phase 1 35 0 916 6 Intron 31 1 19 544 Phase 2 26 4 0 905 Precision Recall F1 Precision Recall F1 Intergenic 0.99135 0.99121 0.99128 Non Coding 0.99593 0.97000 0.98280 UTR 0.95217 0.73000 0.82642 Phase 0 0.79389 0.96190 0.86986 Coding 0.95837 0.93523 0.94666 Phase 1 0.80000 0.95716 0.87155 Intron 0.72244 0.91429 0.80712 Phase 2 0.79039 0.96791 0.87019 Subgenic 0.91595 0.93220 0.92400 Coding 0.79476 0.96228 0.87054 Genic 0.91784 0.91846 0.91815 Reverse for Sequence contig_19545 - ID 344 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13413 10 45 107 Non Coding 15776 469 515 464 UTR 30 730 11 8 Phase 0 13 2855 1 1 Coding 31 9 9866 144 Phase 1 12 3 2813 2 Intron 2 7 68 1323 Phase 2 13 3 1 2863 Precision Recall F1 Precision Recall F1 Intergenic 0.99533 0.98807 0.99168 Non Coding 0.99760 0.91593 0.95502 UTR 0.96561 0.93710 0.95114 Phase 0 0.85736 0.99477 0.92097 Coding 0.98759 0.98169 0.98463 Phase 1 0.84474 0.99399 0.91331 Intron 0.83628 0.94500 0.88732 Phase 2 0.85976 0.99410 0.92206 Subgenic 0.96690 0.97721 0.97203 Coding 0.85395 0.99429 0.91879 Genic 0.96682 0.97465 0.97072 BP_Extractor for Sequence contig_19938 - ID 345 Forward for Sequence contig_19938 - ID 345 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9987 1 0 0 Non Coding 11567 4 1 0 UTR 38 174 0 12 Phase 0 14 571 0 0 Coding 9 62 1725 13 Phase 1 11 0 574 0 Intron 25 2 0 1277 Phase 2 8 0 0 575 Precision Recall F1 Precision Recall F1 Intergenic 0.99284 0.99990 0.99636 Non Coding 0.99716 0.99957 0.99836 UTR 0.72803 0.77679 0.75162 Phase 0 0.99304 0.97607 0.98448 Coding 1.00000 0.95357 0.97623 Phase 1 0.99826 0.98120 0.98966 Intron 0.98080 0.97929 0.98005 Phase 2 1.00000 0.98628 0.99309 Subgenic 0.99174 0.96434 0.97785 Coding 0.99710 0.98118 0.98907 Genic 0.97244 0.95175 0.96199 Reverse for Sequence contig_19938 - ID 345 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11927 0 0 0 Non Coding 12131 0 0 0 UTR 131 0 0 0 Phase 0 402 0 0 0 Coding 1262 0 0 0 Phase 1 397 0 0 0 Intron 5 0 0 0 Phase 2 395 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89508 1.00000 0.94464 Non Coding 0.91039 1.00000 0.95310 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19985 - ID 346 Forward for Sequence contig_19985 - ID 346 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7677 2 0 0 Non Coding 12392 2 0 0 UTR 6 375 0 0 Phase 0 5 198 0 6 Coding 7 0 617 0 Phase 1 1 6 200 0 Intron 0 0 1 4333 Phase 2 2 0 6 200 Precision Recall F1 Precision Recall F1 Intergenic 0.99831 0.99974 0.99902 Non Coding 0.99935 0.99984 0.99960 UTR 0.99469 0.98425 0.98945 Phase 0 0.96117 0.94737 0.95422 Coding 0.99838 0.98878 0.99356 Phase 1 0.97087 0.96618 0.96852 Intron 1.00000 0.99977 0.99988 Phase 2 0.97087 0.96154 0.96618 Subgenic 0.99980 0.99839 0.99909 Coding 0.96764 0.95833 0.96296 Genic 0.99944 0.99738 0.99841 Reverse for Sequence contig_19985 - ID 346 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12770 0 0 0 Non Coding 12764 0 0 0 UTR 9 0 0 0 Phase 0 89 0 0 0 Coding 225 0 0 0 Phase 1 76 0 0 0 Intron 14 0 0 0 Phase 2 89 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98095 1.00000 0.99038 Non Coding 0.98049 1.00000 0.99015 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_19997 - ID 347 Forward for Sequence contig_19997 - ID 347 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17194 0 0 0 Non Coding 17324 0 0 0 UTR 49 0 0 0 Phase 0 141 0 0 0 Coding 437 0 0 0 Phase 1 141 0 0 0 Intron 67 0 0 0 Phase 2 141 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96884 1.00000 0.98417 Non Coding 0.97616 1.00000 0.98794 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_19997 - ID 347 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16280 0 0 0 Non Coding 16772 0 0 0 UTR 140 0 0 0 Phase 0 332 0 0 0 Coding 1295 0 0 0 Phase 1 331 0 0 0 Intron 32 0 0 0 Phase 2 312 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91734 1.00000 0.95689 Non Coding 0.94506 1.00000 0.97175 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_20058 - ID 348 Forward for Sequence contig_20058 - ID 348 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3451 3 0 15 Non Coding 5057 33 37 38 UTR 6 136 0 2 Phase 0 7 385 5 0 Coding 1 3 1262 31 Phase 1 8 0 380 3 Intron 2 0 4 1429 Phase 2 7 4 0 381 Precision Recall F1 Precision Recall F1 Intergenic 0.99740 0.99481 0.99610 Non Coding 0.99567 0.97909 0.98731 UTR 0.95775 0.94444 0.95105 Phase 0 0.91232 0.96977 0.94017 Coding 0.99684 0.97301 0.98478 Phase 1 0.90047 0.97187 0.93481 Intron 0.96750 0.99582 0.98146 Phase 2 0.90284 0.97194 0.93612 Subgenic 0.98104 0.98499 0.98301 Coding 0.90521 0.97119 0.93704 Genic 0.97990 0.98296 0.98143 Reverse for Sequence contig_20058 - ID 348 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6283 0 0 0 Non Coding 6313 0 0 0 UTR 29 0 0 0 Phase 0 11 0 0 0 Coding 33 0 0 0 Phase 1 10 0 0 0 Intron 0 0 0 0 Phase 2 11 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99023 1.00000 0.99509 Non Coding 0.99496 1.00000 0.99747 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_20129 - ID 349 Forward for Sequence contig_20129 - ID 349 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 32456 5 0 120 Non Coding 34998 33 36 42 UTR 214 242 2 3 Phase 0 333 886 0 0 Coding 1141 15 2723 22 Phase 1 343 0 883 0 Intron 96 3 32 1686 Phase 2 329 0 0 877 Precision Recall F1 Precision Recall F1 Intergenic 0.95721 0.99616 0.97630 Non Coding 0.97209 0.99684 0.98431 UTR 0.91321 0.52495 0.66667 Phase 0 0.96409 0.72683 0.82881 Coding 0.98767 0.69803 0.81796 Phase 1 0.96083 0.72023 0.82331 Intron 0.92081 0.92790 0.92434 Phase 2 0.95430 0.72720 0.82541 Subgenic 0.96099 0.77107 0.85562 Coding 0.95974 0.72473 0.82584 Genic 0.95838 0.75271 0.84318 Reverse for Sequence contig_20129 - ID 349 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21900 4 5 0 Non Coding 31681 55 64 56 UTR 51 708 6 23 Phase 0 503 1803 1 0 Coding 1663 2 5554 21 Phase 1 504 0 1792 0 Intron 502 25 7 8289 Phase 2 500 0 0 1801 Precision Recall F1 Precision Recall F1 Intergenic 0.90811 0.99959 0.95166 Non Coding 0.95459 0.99451 0.97414 UTR 0.95805 0.89848 0.92731 Phase 0 0.97040 0.78153 0.86579 Coding 0.99677 0.76713 0.86700 Phase 1 0.96500 0.78049 0.86299 Intron 0.99472 0.93948 0.96631 Phase 2 0.96984 0.78270 0.86628 Subgenic 0.99554 0.86179 0.92385 Coding 0.96841 0.78158 0.86502 Genic 0.99365 0.86351 0.92402 BP_Extractor for Sequence contig_20184 - ID 350 Forward for Sequence contig_20184 - ID 350 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8156 2 9 25 Non Coding 9823 52 53 56 UTR 69 55 4 0 Phase 0 18 386 0 0 Coding 244 4 1293 8 Phase 1 14 0 385 0 Intron 457 1 8 851 Phase 2 17 0 0 382 Precision Recall F1 Precision Recall F1 Intergenic 0.91374 0.99561 0.95292 Non Coding 0.99504 0.98387 0.98942 UTR 0.88710 0.42969 0.57895 Phase 0 0.88128 0.95545 0.91686 Coding 0.98402 0.83473 0.90325 Phase 1 0.87900 0.96491 0.91995 Intron 0.96267 0.64617 0.77328 Phase 2 0.87215 0.95739 0.91278 Subgenic 0.97543 0.74808 0.84676 Coding 0.87747 0.95923 0.91653 Genic 0.97301 0.73447 0.83708 Reverse for Sequence contig_20184 - ID 350 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11151 0 0 0 Non Coding 11168 0 0 0 UTR 13 0 0 0 Phase 0 7 0 0 0 Coding 20 0 0 0 Phase 1 5 0 0 0 Intron 2 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99687 1.00000 0.99843 Non Coding 0.99839 1.00000 0.99919 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_20255 - ID 351 Forward for Sequence contig_20255 - ID 351 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3568 0 0 0 Non Coding 3568 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_20255 - ID 351 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3568 0 0 0 Non Coding 3568 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_20322 - ID 352 Forward for Sequence contig_20322 - ID 352 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4818 0 0 0 Non Coding 4818 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_20322 - ID 352 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4672 0 0 0 Non Coding 4649 0 0 0 UTR 20 0 0 0 Phase 0 55 0 0 0 Coding 126 0 0 0 Phase 1 54 0 0 0 Intron 0 0 0 0 Phase 2 60 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96970 1.00000 0.98462 Non Coding 0.96492 1.00000 0.98215 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_20336 - ID 353 Forward for Sequence contig_20336 - ID 353 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18264 0 0 0 Non Coding 19052 5 2 1 UTR 300 188 0 0 Phase 0 90 291 0 0 Coding 329 2 888 0 Phase 1 92 0 294 0 Intron 26 0 0 223 Phase 2 98 0 0 295 Precision Recall F1 Precision Recall F1 Intergenic 0.96538 1.00000 0.98238 Non Coding 0.98552 0.99958 0.99250 UTR 0.98947 0.38525 0.55457 Phase 0 0.98311 0.76378 0.85968 Coding 1.00000 0.72847 0.84290 Phase 1 0.99324 0.76166 0.86217 Intron 1.00000 0.89558 0.94492 Phase 2 0.99662 0.75064 0.85631 Subgenic 1.00000 0.75681 0.86157 Coding 0.99099 0.75862 0.85938 Genic 0.99846 0.66411 0.79767 Reverse for Sequence contig_20336 - ID 353 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11284 10 193 78 Non Coding 15242 249 294 282 UTR 35 270 80 31 Phase 0 26 1377 0 4 Coding 36 17 4566 91 Phase 1 28 7 1333 0 Intron 1 6 60 3462 Phase 2 25 0 6 1347 Precision Recall F1 Precision Recall F1 Intergenic 0.99366 0.97570 0.98460 Non Coding 0.99484 0.94865 0.97120 UTR 0.89109 0.64904 0.75104 Phase 0 0.84323 0.97868 0.90592 Coding 0.93203 0.96943 0.95036 Phase 1 0.81629 0.97442 0.88837 Intron 0.94539 0.98101 0.96287 Phase 2 0.82486 0.97750 0.89472 Subgenic 0.93774 0.97439 0.95571 Coding 0.82813 0.97688 0.89638 Genic 0.93615 0.95875 0.94731 BP_Extractor for Sequence contig_20368 - ID 354 Forward for Sequence contig_20368 - ID 354 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3113 0 0 0 Non Coding 3113 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_20368 - ID 354 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3113 0 0 0 Non Coding 3113 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_20515 - ID 355 Forward for Sequence contig_20515 - ID 355 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4325 3 0 30 Non Coding 5286 16 20 19 UTR 20 136 1 19 Phase 0 10 712 3 0 Coding 13 63 2183 23 Phase 1 10 0 709 2 Intron 1 0 12 685 Phase 2 12 4 0 711 Precision Recall F1 Precision Recall F1 Intergenic 0.99220 0.99243 0.99231 Non Coding 0.99398 0.98970 0.99184 UTR 0.67327 0.77273 0.71958 Phase 0 0.97268 0.98207 0.97735 Coding 0.99408 0.95662 0.97499 Phase 1 0.96858 0.98336 0.97591 Intron 0.90489 0.98138 0.94158 Phase 2 0.97131 0.97799 0.97464 Subgenic 0.97122 0.96242 0.96680 Coding 0.97086 0.98113 0.97597 Genic 0.95214 0.95184 0.95199 Reverse for Sequence contig_20515 - ID 355 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6674 0 0 0 Non Coding 7126 0 0 0 UTR 66 0 0 0 Phase 0 129 0 0 0 Coding 579 0 0 0 Phase 1 130 0 0 0 Intron 195 0 0 0 Phase 2 129 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88821 1.00000 0.94080 Non Coding 0.94836 1.00000 0.97350 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_20525 - ID 356 Forward for Sequence contig_20525 - ID 356 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10169 3 0 8 Non Coding 12152 127 159 146 UTR 37 293 20 9 Phase 0 9 985 0 0 Coding 40 2 3302 34 Phase 1 11 0 953 0 Intron 26 8 14 1554 Phase 2 11 0 0 966 Precision Recall F1 Precision Recall F1 Intergenic 0.98997 0.99892 0.99443 Non Coding 0.99746 0.96567 0.98131 UTR 0.95752 0.81616 0.88120 Phase 0 0.88579 0.99095 0.93542 Coding 0.98981 0.97750 0.98362 Phase 1 0.85701 0.98859 0.91811 Intron 0.96822 0.97004 0.96913 Phase 2 0.86871 0.98874 0.92484 Subgenic 0.98280 0.97510 0.97893 Coding 0.87050 0.98944 0.92617 Genic 0.98132 0.96441 0.97279 Reverse for Sequence contig_20525 - ID 356 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12576 9 0 0 Non Coding 13961 27 20 23 UTR 84 145 0 0 Phase 0 31 463 0 0 Coding 139 1 1458 39 Phase 1 28 0 470 0 Intron 17 5 12 1034 Phase 2 29 0 0 467 Precision Recall F1 Precision Recall F1 Intergenic 0.98127 0.99928 0.99020 Non Coding 0.99374 0.99501 0.99437 UTR 0.90625 0.63319 0.74550 Phase 0 0.94490 0.93725 0.94106 Coding 0.99184 0.89065 0.93853 Phase 1 0.95918 0.94378 0.95142 Intron 0.96365 0.96816 0.96590 Phase 2 0.95306 0.94153 0.94726 Subgenic 0.97994 0.92126 0.94970 Coding 0.95238 0.94086 0.94659 Genic 0.97558 0.89877 0.93560 BP_Extractor for Sequence contig_20695 - ID 357 Forward for Sequence contig_20695 - ID 357 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 39127 4 0 0 Non Coding 40959 132 122 143 UTR 63 586 6 5 Phase 0 53 1208 0 0 Coding 137 7 4014 47 Phase 1 55 0 1218 0 Intron 477 0 0 672 Phase 2 58 0 0 1197 Precision Recall F1 Precision Recall F1 Intergenic 0.98299 0.99990 0.99137 Non Coding 0.99596 0.99040 0.99317 UTR 0.98157 0.88788 0.93238 Phase 0 0.90149 0.95797 0.92887 Coding 0.99851 0.95458 0.97605 Phase 1 0.90896 0.95679 0.93226 Intron 0.92818 0.58486 0.71757 Phase 2 0.89328 0.95378 0.92254 Subgenic 0.98777 0.87523 0.92810 Coding 0.90124 0.95619 0.92790 Genic 0.98708 0.87662 0.92858 Reverse for Sequence contig_20695 - ID 357 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 39088 5 0 0 Non Coding 41660 110 152 120 UTR 50 250 4 7 Phase 0 14 1035 0 0 Coding 225 6 3429 2 Phase 1 21 0 993 0 Intron 63 39 2 1975 Phase 2 15 0 0 1025 Precision Recall F1 Precision Recall F1 Intergenic 0.99143 0.99987 0.99563 Non Coding 0.99880 0.99091 0.99484 UTR 0.83333 0.80386 0.81833 Phase 0 0.90393 0.98665 0.94348 Coding 0.99825 0.93637 0.96632 Phase 1 0.86725 0.97929 0.91987 Intron 0.99546 0.94998 0.97219 Phase 2 0.89520 0.98558 0.93822 Subgenic 0.99723 0.94130 0.96846 Coding 0.88879 0.98389 0.93392 Genic 0.98863 0.93424 0.96067 BP_Extractor for Sequence contig_20789 - ID 358 Forward for Sequence contig_20789 - ID 358 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7013 0 0 0 Non Coding 7128 0 0 0 UTR 20 0 0 0 Phase 0 115 0 0 0 Coding 410 0 0 0 Phase 1 108 0 0 0 Intron 5 0 0 0 Phase 2 97 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94160 1.00000 0.96992 Non Coding 0.95704 1.00000 0.97805 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_20789 - ID 358 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7448 0 0 0 Non Coding 7448 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_20869 - ID 359 Forward for Sequence contig_20869 - ID 359 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12064 0 0 0 Non Coding 12064 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 5 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99959 1.00000 0.99979 Non Coding 0.99959 1.00000 0.99979 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_20869 - ID 359 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12019 0 0 0 Non Coding 12053 0 0 0 UTR 9 0 0 0 Phase 0 6 0 0 0 Coding 34 0 0 0 Phase 1 5 0 0 0 Intron 7 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99586 1.00000 0.99792 Non Coding 0.99867 1.00000 0.99934 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_20918 - ID 360 Forward for Sequence contig_20918 - ID 360 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9129 5 125 90 Non Coding 18220 260 257 273 UTR 23 667 20 29 Phase 0 20 1505 0 0 Coding 101 7 5125 62 Phase 1 19 0 1508 0 Intron 59 15 25 8092 Phase 2 20 0 0 1492 Precision Recall F1 Precision Recall F1 Intergenic 0.98035 0.97647 0.97840 Non Coding 0.99677 0.95844 0.97723 UTR 0.96110 0.90257 0.93091 Phase 0 0.85269 0.98689 0.91489 Coding 0.96789 0.96789 0.96789 Phase 1 0.85439 0.98756 0.91616 Intron 0.97812 0.98791 0.98299 Phase 2 0.84533 0.98677 0.91059 Subgenic 0.97413 0.98005 0.97708 Coding 0.85080 0.98707 0.91389 Genic 0.97350 0.97603 0.97476 Reverse for Sequence contig_20918 - ID 360 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23284 7 0 0 Non Coding 23432 0 0 0 UTR 2 139 0 0 Phase 0 0 48 0 0 Coding 0 0 142 0 Phase 1 0 0 47 0 Intron 0 0 0 0 Phase 2 0 0 0 47 Precision Recall F1 Precision Recall F1 Intergenic 0.99991 0.99970 0.99981 Non Coding 1.00000 1.00000 1.00000 UTR 0.95205 0.98582 0.96864 Phase 0 1.00000 1.00000 1.00000 Coding 1.00000 1.00000 1.00000 Phase 1 1.00000 1.00000 1.00000 Intron NaN NaN NaN Phase 2 1.00000 1.00000 1.00000 Subgenic 1.00000 1.00000 1.00000 Coding 1.00000 1.00000 1.00000 Genic 0.97569 0.99293 0.98424 BP_Extractor for Sequence contig_20954 - ID 361 Forward for Sequence contig_20954 - ID 361 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18657 12 0 63 Non Coding 25398 31 32 29 UTR 12 169 7 3 Phase 0 4 208 0 0 Coding 41 2 694 10 Phase 1 9 0 207 0 Intron 128 0 16 6320 Phase 2 6 0 0 210 Precision Recall F1 Precision Recall F1 Intergenic 0.99039 0.99600 0.99319 Non Coding 0.99925 0.99639 0.99782 UTR 0.92350 0.88482 0.90374 Phase 0 0.87029 0.98113 0.92239 Coding 0.96792 0.92905 0.94809 Phase 1 0.86611 0.95833 0.90989 Intron 0.98812 0.97772 0.98289 Phase 2 0.87866 0.97222 0.92308 Subgenic 0.98608 0.97268 0.97934 Coding 0.87169 0.97050 0.91844 Genic 0.98451 0.97041 0.97741 Reverse for Sequence contig_20954 - ID 361 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26134 0 0 0 Non Coding 26129 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 0 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99981 1.00000 0.99990 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN NaN NaN Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN BP_Extractor for Sequence contig_21024 - ID 362 Forward for Sequence contig_21024 - ID 362 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4745 5 8 128 Non Coding 16746 142 164 167 UTR 15 464 22 9 Phase 0 17 1263 0 3 Coding 131 11 4148 79 Phase 1 15 2 1240 0 Intron 266 23 42 10919 Phase 2 17 0 2 1237 Precision Recall F1 Precision Recall F1 Intergenic 0.92011 0.97114 0.94494 Non Coding 0.99708 0.97253 0.98465 UTR 0.92247 0.90980 0.91609 Phase 0 0.89765 0.98441 0.93903 Coding 0.98294 0.94942 0.96589 Phase 1 0.88193 0.98648 0.93128 Intron 0.98060 0.97058 0.97556 Phase 2 0.87918 0.98487 0.92903 Subgenic 0.98124 0.96466 0.97288 Coding 0.88626 0.98525 0.93313 Genic 0.97938 0.96292 0.97108 Reverse for Sequence contig_21024 - ID 362 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19599 1 0 59 Non Coding 20666 2 1 1 UTR 20 47 2 1 Phase 0 3 109 0 0 Coding 10 3 331 0 Phase 1 7 0 110 0 Intron 22 1 0 919 Phase 2 6 0 0 110 Precision Recall F1 Precision Recall F1 Intergenic 0.99735 0.99695 0.99715 Non Coding 0.99923 0.99981 0.99952 UTR 0.90385 0.67143 0.77049 Phase 0 0.98198 0.97321 0.97758 Coding 0.99399 0.96221 0.97784 Phase 1 0.99099 0.94017 0.96491 Intron 0.93871 0.97558 0.95679 Phase 2 0.99099 0.94828 0.96916 Subgenic 0.95274 0.97201 0.96228 Coding 0.98799 0.95362 0.97050 Genic 0.95088 0.95649 0.95368 BP_Extractor for Sequence contig_21106 - ID 363 Forward for Sequence contig_21106 - ID 363 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8109 0 0 0 Non Coding 8137 0 0 0 UTR 18 0 0 0 Phase 0 5 0 0 0 Coding 24 0 0 0 Phase 1 7 0 0 0 Intron 2 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99460 1.00000 0.99729 Non Coding 0.99804 1.00000 0.99902 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_21106 - ID 363 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6193 4 0 0 Non Coding 6445 6 9 8 UTR 13 211 10 0 Phase 0 84 486 0 0 Coding 129 0 1466 0 Phase 1 67 0 483 0 Intron 0 0 0 127 Phase 2 81 0 0 484 Precision Recall F1 Precision Recall F1 Intergenic 0.97758 0.99935 0.98835 Non Coding 0.96525 0.99644 0.98060 UTR 0.98140 0.90171 0.93987 Phase 0 0.98780 0.85263 0.91525 Coding 0.99322 0.91912 0.95474 Phase 1 0.98171 0.87818 0.92706 Intron 1.00000 1.00000 1.00000 Phase 2 0.98374 0.85664 0.91580 Subgenic 0.99376 0.92509 0.95820 Coding 0.98442 0.86231 0.91933 Genic 0.99230 0.92229 0.95601 BP_Extractor for Sequence contig_21342 - ID 364 Forward for Sequence contig_21342 - ID 364 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11074 0 0 0 Non Coding 11081 0 0 0 UTR 6 0 0 0 Phase 0 2 0 0 0 Coding 3 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99919 1.00000 0.99959 Non Coding 0.99982 1.00000 0.99991 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_21342 - ID 364 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11053 0 0 0 Non Coding 11070 0 0 0 UTR 10 0 0 0 Phase 0 4 0 0 0 Coding 18 0 0 0 Phase 1 4 0 0 0 Intron 2 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99729 1.00000 0.99864 Non Coding 0.99883 1.00000 0.99941 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_21358 - ID 365 Forward for Sequence contig_21358 - ID 365 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8478 0 0 0 Non Coding 8803 0 0 0 UTR 126 0 0 0 Phase 0 378 0 0 0 Coding 1280 0 0 0 Phase 1 351 0 0 0 Intron 11 0 0 0 Phase 2 363 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85680 1.00000 0.92288 Non Coding 0.88964 1.00000 0.94160 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_21358 - ID 365 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7881 5 8 0 Non Coding 8344 45 69 59 UTR 44 251 0 0 Phase 0 13 460 0 0 Coding 37 0 1506 16 Phase 1 11 0 436 0 Intron 22 0 1 124 Phase 2 12 0 0 446 Precision Recall F1 Precision Recall F1 Intergenic 0.98710 0.99835 0.99269 Non Coding 0.99570 0.97969 0.98763 UTR 0.98047 0.85085 0.91107 Phase 0 0.91089 0.97252 0.94070 Coding 0.99406 0.96600 0.97983 Phase 1 0.86337 0.97539 0.91597 Intron 0.88571 0.84354 0.86411 Phase 2 0.88317 0.97380 0.92627 Subgenic 0.98489 0.95545 0.96995 Coding 0.88581 0.97388 0.92776 Genic 0.98430 0.94003 0.96166 BP_Extractor for Sequence contig_21385 - ID 366 Forward for Sequence contig_21385 - ID 366 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19256 0 0 0 Non Coding 20210 0 0 0 UTR 109 0 0 0 Phase 0 394 0 0 0 Coding 1650 0 0 0 Phase 1 398 0 0 0 Intron 388 0 0 0 Phase 2 401 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89969 1.00000 0.94719 Non Coding 0.94426 1.00000 0.97133 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_21385 - ID 366 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18107 2 233 211 Non Coding 18915 255 269 270 UTR 53 94 9 32 Phase 0 30 548 0 0 Coding 118 0 2166 7 Phase 1 23 0 534 0 Intron 17 1 1 352 Phase 2 26 0 0 533 Precision Recall F1 Precision Recall F1 Intergenic 0.98972 0.97596 0.98279 Non Coding 0.99584 0.95971 0.97744 UTR 0.96907 0.50000 0.65965 Phase 0 0.68244 0.94810 0.79363 Coding 0.89913 0.94544 0.92170 Phase 1 0.66501 0.95871 0.78529 Intron 0.58472 0.94879 0.72354 Phase 2 0.66376 0.95349 0.78267 Subgenic 0.83627 0.94591 0.88771 Coding 0.67040 0.95336 0.78723 Genic 0.84041 0.91649 0.87680 BP_Extractor for Sequence contig_21437 - ID 367 Forward for Sequence contig_21437 - ID 367 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16025 0 0 0 Non Coding 16155 0 0 0 UTR 21 0 0 0 Phase 0 155 0 0 0 Coding 565 0 0 0 Phase 1 150 0 0 0 Intron 0 0 0 0 Phase 2 151 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96472 1.00000 0.98204 Non Coding 0.97255 1.00000 0.98608 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_21437 - ID 367 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12277 1 0 0 Non Coding 15535 5 3 5 UTR 107 137 1 0 Phase 0 30 326 0 0 Coding 126 2 982 3 Phase 1 30 0 328 0 Intron 740 0 10 2225 Phase 2 23 0 0 326 Precision Recall F1 Precision Recall F1 Intergenic 0.92657 0.99992 0.96185 Non Coding 0.99469 0.99916 0.99692 UTR 0.97857 0.55918 0.71169 Phase 0 0.98489 0.91573 0.94905 Coding 0.98892 0.88230 0.93257 Phase 1 0.99094 0.91620 0.95210 Intron 0.99865 0.74790 0.85528 Phase 2 0.98489 0.93410 0.95882 Subgenic 0.99565 0.78449 0.87755 Coding 0.98691 0.92192 0.95331 Genic 0.99494 0.77175 0.86925 BP_Extractor for Sequence contig_21440 - ID 368 Forward for Sequence contig_21440 - ID 368 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 40794 24 0 0 Non Coding 46371 50 51 55 UTR 399 802 3 8 Phase 0 810 1241 1 0 Coding 2874 6 3807 64 Phase 1 819 0 1239 0 Intron 808 10 63 3028 Phase 2 817 0 0 1236 Precision Recall F1 Precision Recall F1 Intergenic 0.90906 0.99941 0.95210 Non Coding 0.94989 0.99665 0.97271 UTR 0.95249 0.66172 0.78092 Phase 0 0.96127 0.60478 0.74245 Coding 0.98296 0.56392 0.71668 Phase 1 0.95972 0.60204 0.73992 Intron 0.97677 0.77462 0.86403 Phase 2 0.95740 0.60205 0.73923 Subgenic 0.98021 0.64118 0.77525 Coding 0.95946 0.60295 0.74053 Genic 0.97722 0.64328 0.77584 Reverse for Sequence contig_21440 - ID 368 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33769 47 442 69 Non Coding 39825 678 794 737 UTR 134 1566 41 48 Phase 0 75 3540 0 3 Coding 448 25 12114 172 Phase 1 62 2 3423 0 Intron 120 11 63 3621 Phase 2 68 0 3 3480 Precision Recall F1 Precision Recall F1 Intergenic 0.97964 0.98374 0.98169 Non Coding 0.99488 0.94745 0.97058 UTR 0.94967 0.87535 0.91099 Phase 0 0.83886 0.97844 0.90329 Coding 0.95687 0.94945 0.95315 Phase 1 0.81114 0.98165 0.88828 Intron 0.92609 0.94915 0.93748 Phase 2 0.82464 0.98001 0.89564 Subgenic 0.94961 0.94938 0.94949 Coding 0.82488 0.98001 0.89578 Genic 0.94961 0.94217 0.94588 BP_Extractor for Sequence contig_21588 - ID 369 Forward for Sequence contig_21588 - ID 369 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3987 0 0 0 Non Coding 3987 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_21588 - ID 369 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3981 0 0 0 Non Coding 3983 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 6 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99850 1.00000 0.99925 Non Coding 0.99900 1.00000 0.99950 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_21918 - ID 370 Forward for Sequence contig_21918 - ID 370 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11700 40 5 120 Non Coding 12547 13 14 15 UTR 0 480 3 0 Phase 0 1 495 0 0 Coding 0 7 1508 2 Phase 1 1 0 494 0 Intron 29 0 8 173 Phase 2 2 0 0 493 Precision Recall F1 Precision Recall F1 Intergenic 0.99753 0.98609 0.99178 Non Coding 0.99968 0.99666 0.99817 UTR 0.91082 0.99379 0.95050 Phase 0 0.97441 0.99798 0.98606 Coding 0.98950 0.99407 0.99178 Phase 1 0.97244 0.99798 0.98504 Intron 0.58644 0.82381 0.68515 Phase 2 0.97047 0.99596 0.98305 Subgenic 0.92413 0.97336 0.94811 Coding 0.97244 0.99731 0.98472 Genic 0.92114 0.97783 0.94864 Reverse for Sequence contig_21918 - ID 370 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12512 1 312 32 Non Coding 13022 140 123 127 UTR 0 123 6 0 Phase 0 21 189 0 0 Coding 259 3 668 39 Phase 1 26 0 206 0 Intron 6 0 1 113 Phase 2 19 0 0 202 Precision Recall F1 Precision Recall F1 Intergenic 0.97926 0.97317 0.97620 Non Coding 0.99496 0.97092 0.98279 UTR 0.96850 0.95349 0.96094 Phase 0 0.57447 0.90000 0.70130 Coding 0.67680 0.68937 0.68303 Phase 1 0.62614 0.88793 0.73440 Intron 0.61413 0.94167 0.74342 Phase 2 0.61398 0.91403 0.73455 Subgenic 0.66695 0.71717 0.69115 Coding 0.60486 0.90045 0.72364 Genic 0.69646 0.74220 0.71860 BP_Extractor for Sequence contig_22017 - ID 371 Forward for Sequence contig_22017 - ID 371 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10945 0 0 0 Non Coding 10968 0 0 0 UTR 16 0 0 0 Phase 0 123 0 0 0 Coding 374 0 0 0 Phase 1 122 0 0 0 Intron 0 0 0 0 Phase 2 122 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96559 1.00000 0.98250 Non Coding 0.96762 1.00000 0.98354 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_22017 - ID 371 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8022 1 0 0 Non Coding 9858 15 15 13 UTR 93 159 11 0 Phase 0 148 323 0 0 Coding 486 0 1000 3 Phase 1 160 0 323 0 Intron 82 0 3 1475 Phase 2 155 0 0 325 Precision Recall F1 Precision Recall F1 Intergenic 0.92387 0.99988 0.96037 Non Coding 0.95514 0.99566 0.97498 UTR 0.99375 0.60456 0.75177 Phase 0 0.95562 0.68577 0.79852 Coding 0.98619 0.67159 0.79904 Phase 1 0.95562 0.66874 0.78685 Intron 0.99797 0.94551 0.97103 Phase 2 0.96154 0.67708 0.79462 Subgenic 0.99318 0.81174 0.89334 Coding 0.95759 0.67713 0.79330 Genic 0.99321 0.79529 0.88330 BP_Extractor for Sequence contig_22076 - ID 372 Forward for Sequence contig_22076 - ID 372 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3325 0 0 0 Non Coding 3341 0 0 0 UTR 11 0 0 0 Phase 0 10 0 0 0 Coding 36 0 0 0 Phase 1 10 0 0 0 Intron 0 0 0 0 Phase 2 11 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98606 1.00000 0.99298 Non Coding 0.99081 1.00000 0.99538 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_22076 - ID 372 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3372 0 0 0 Non Coding 3372 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_22086 - ID 373 Forward for Sequence contig_22086 - ID 373 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7620 5 0 22 Non Coding 7794 0 0 0 UTR 10 34 0 1 Phase 0 2 267 0 0 Coding 7 0 801 0 Phase 1 2 0 267 0 Intron 0 0 0 101 Phase 2 2 0 0 267 Precision Recall F1 Precision Recall F1 Intergenic 0.99777 0.99647 0.99712 Non Coding 0.99923 1.00000 0.99962 UTR 0.87179 0.75556 0.80952 Phase 0 1.00000 0.99257 0.99627 Coding 1.00000 0.99134 0.99565 Phase 1 1.00000 0.99257 0.99627 Intron 0.81452 1.00000 0.89778 Phase 2 1.00000 0.99257 0.99627 Subgenic 0.97514 0.99230 0.98364 Coding 1.00000 0.99257 0.99627 Genic 0.97095 0.98113 0.97602 Reverse for Sequence contig_22086 - ID 373 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7928 2 0 0 Non Coding 8204 5 6 6 UTR 2 193 0 0 Phase 0 2 126 0 0 Coding 0 0 391 1 Phase 1 0 0 125 0 Intron 0 0 2 82 Phase 2 2 0 0 125 Precision Recall F1 Precision Recall F1 Intergenic 0.99975 0.99975 0.99975 Non Coding 0.99951 0.99793 0.99872 UTR 0.98974 0.98974 0.98974 Phase 0 0.96183 0.98438 0.97297 Coding 0.99491 0.99745 0.99618 Phase 1 0.95420 1.00000 0.97656 Intron 0.98795 0.97619 0.98204 Phase 2 0.95420 0.98425 0.96899 Subgenic 0.99370 0.99370 0.99370 Coding 0.95674 0.98947 0.97283 Genic 0.99255 0.99255 0.99255 BP_Extractor for Sequence contig_22119 - ID 374 Forward for Sequence contig_22119 - ID 374 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19211 0 0 0 Non Coding 19459 0 0 0 UTR 16 0 0 0 Phase 0 71 0 0 0 Coding 292 0 0 0 Phase 1 75 0 0 0 Intron 156 0 0 0 Phase 2 70 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97642 1.00000 0.98807 Non Coding 0.98902 1.00000 0.99448 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_22119 - ID 374 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14646 0 0 0 Non Coding 16707 150 146 204 UTR 64 215 5 0 Phase 0 16 823 0 0 Coding 143 9 2862 4 Phase 1 17 0 827 0 Intron 1423 8 52 244 Phase 2 16 0 0 769 Precision Recall F1 Precision Recall F1 Intergenic 0.89985 1.00000 0.94729 Non Coding 0.99708 0.97094 0.98384 UTR 0.92672 0.75704 0.83333 Phase 0 0.84584 0.98093 0.90839 Coding 0.98047 0.94831 0.96412 Phase 1 0.84995 0.97986 0.91029 Intron 0.98387 0.14129 0.24709 Phase 2 0.79034 0.97962 0.87486 Subgenic 0.98074 0.65458 0.78514 Coding 0.82871 0.98015 0.89809 Genic 0.97705 0.66037 0.78809 BP_Extractor for Sequence contig_22265 - ID 375 Forward for Sequence contig_22265 - ID 375 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4293 1 41 44 Non Coding 5144 48 47 46 UTR 4 61 28 9 Phase 0 12 741 0 0 Coding 11 0 2267 46 Phase 1 10 0 742 0 Intron 0 0 31 710 Phase 2 13 0 0 743 Precision Recall F1 Precision Recall F1 Intergenic 0.99652 0.98036 0.98837 Non Coding 0.99324 0.97332 0.98318 UTR 0.98387 0.59804 0.74390 Phase 0 0.93916 0.98406 0.96109 Coding 0.95775 0.97547 0.96653 Phase 1 0.94043 0.98670 0.96301 Intron 0.87763 0.95816 0.91613 Phase 2 0.94170 0.98280 0.96181 Subgenic 0.93734 0.97129 0.95401 Coding 0.94043 0.98452 0.96197 Genic 0.93823 0.95927 0.94863 Reverse for Sequence contig_22265 - ID 375 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5439 0 0 0 Non Coding 5997 30 32 30 UTR 33 49 4 7 Phase 0 87 395 11 0 Coding 248 1 1294 108 Phase 1 79 0 390 13 Intron 6 0 1 356 Phase 2 84 8 0 390 Precision Recall F1 Precision Recall F1 Intergenic 0.94988 1.00000 0.97429 Non Coding 0.95998 0.98489 0.97228 UTR 0.98000 0.52688 0.68531 Phase 0 0.91224 0.80122 0.85313 Coding 0.99615 0.78377 0.87729 Phase 1 0.90069 0.80913 0.85246 Intron 0.75584 0.98072 0.85372 Phase 2 0.90069 0.80913 0.85246 Subgenic 0.93220 0.81927 0.87209 Coding 0.90454 0.80645 0.85269 Genic 0.93352 0.80636 0.86529 BP_Extractor for Sequence contig_22387 - ID 376 Forward for Sequence contig_22387 - ID 376 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12487 0 0 0 Non Coding 12487 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_22387 - ID 376 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10961 0 0 0 Non Coding 11254 0 0 0 UTR 63 0 0 0 Phase 0 433 0 0 0 Coding 1364 0 0 0 Phase 1 398 0 0 0 Intron 99 0 0 0 Phase 2 402 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.87779 1.00000 0.93492 Non Coding 0.90126 1.00000 0.94806 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_22394 - ID 377 Forward for Sequence contig_22394 - ID 377 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14079 0 0 0 Non Coding 14314 71 80 76 UTR 1 214 2 0 Phase 0 0 621 0 0 Coding 9 12 2073 0 Phase 1 1 0 613 1 Intron 0 0 4 0 Phase 2 0 1 0 616 Precision Recall F1 Precision Recall F1 Intergenic 0.99929 1.00000 0.99964 Non Coding 0.99993 0.98439 0.99210 UTR 0.94690 0.98618 0.96614 Phase 0 0.89610 1.00000 0.94521 Coding 0.99711 0.98997 0.99353 Phase 1 0.88456 0.99675 0.93731 Intron NaN 0.00000 0.00000 Phase 2 0.88889 0.99838 0.94046 Subgenic 0.99711 0.98808 0.99258 Coding 0.88985 0.99838 0.94100 Genic 0.99219 0.98790 0.99004 Reverse for Sequence contig_22394 - ID 377 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8565 0 0 17 Non Coding 13740 13 13 11 UTR 34 591 2 1 Phase 0 4 867 0 0 Coding 21 0 2619 11 Phase 1 5 0 867 0 Intron 65 1 19 4448 Phase 2 5 0 0 869 Precision Recall F1 Precision Recall F1 Intergenic 0.98618 0.99802 0.99207 Non Coding 0.99898 0.99731 0.99815 UTR 0.99831 0.94108 0.96885 Phase 0 0.98523 0.99541 0.99029 Coding 0.99205 0.98793 0.98998 Phase 1 0.98523 0.99427 0.98973 Intron 0.99352 0.98125 0.98735 Phase 2 0.98750 0.99428 0.99088 Subgenic 0.99297 0.98371 0.98832 Coding 0.98598 0.99465 0.99030 Genic 0.99338 0.98029 0.98679 BP_Extractor for Sequence contig_22591 - ID 378 Forward for Sequence contig_22591 - ID 378 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7350 0 0 0 Non Coding 7579 0 0 0 UTR 13 0 0 0 Phase 0 20 0 0 0 Coding 264 0 0 0 Phase 1 15 0 0 0 Intron 8 0 0 0 Phase 2 21 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96267 1.00000 0.98098 Non Coding 0.99267 1.00000 0.99632 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_22591 - ID 378 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7635 0 0 0 Non Coding 7635 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_22637 - ID 379 Forward for Sequence contig_22637 - ID 379 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14706 0 0 0 Non Coding 15967 12 10 10 UTR 4 182 3 0 Phase 0 1 322 0 0 Coding 17 2 980 2 Phase 1 0 0 324 0 Intron 10 10 19 1036 Phase 2 1 0 0 324 Precision Recall F1 Precision Recall F1 Intergenic 0.99790 1.00000 0.99895 Non Coding 0.99987 0.99800 0.99894 UTR 0.93814 0.96296 0.95039 Phase 0 0.96407 0.99690 0.98021 Coding 0.97804 0.97902 0.97853 Phase 1 0.97006 1.00000 0.98480 Intron 0.99807 0.96372 0.98060 Phase 2 0.97006 0.99692 0.98331 Subgenic 0.98824 0.97110 0.97959 Coding 0.96806 0.99794 0.98278 Genic 0.98389 0.97042 0.97711 Reverse for Sequence contig_22637 - ID 379 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16789 0 0 0 Non Coding 16736 0 0 0 UTR 22 0 0 0 Phase 0 73 0 0 0 Coding 160 0 0 0 Phase 1 85 0 0 0 Intron 0 0 0 0 Phase 2 77 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98928 1.00000 0.99461 Non Coding 0.98615 1.00000 0.99303 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_22638 - ID 380 Forward for Sequence contig_22638 - ID 380 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8507 1 0 0 Non Coding 9207 0 1 0 UTR 0 114 1 3 Phase 0 0 306 0 0 Coding 0 4 917 4 Phase 1 1 0 305 0 Intron 59 0 0 516 Phase 2 0 0 0 306 Precision Recall F1 Precision Recall F1 Intergenic 0.99311 0.99988 0.99649 Non Coding 0.99989 0.99989 0.99989 UTR 0.95798 0.96610 0.96203 Phase 0 1.00000 1.00000 1.00000 Coding 0.99891 0.99135 0.99512 Phase 1 0.99673 0.99673 0.99673 Intron 0.98662 0.89739 0.93989 Phase 2 1.00000 1.00000 1.00000 Subgenic 0.99445 0.95533 0.97450 Coding 0.99891 0.99891 0.99891 Genic 0.99167 0.95612 0.97357 Reverse for Sequence contig_22638 - ID 380 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6885 4 0 16 Non Coding 9261 2 0 0 UTR 23 426 1 0 Phase 0 8 278 0 0 Coding 8 8 838 6 Phase 1 9 0 280 0 Intron 0 26 1 1884 Phase 2 8 0 0 280 Precision Recall F1 Precision Recall F1 Intergenic 0.99552 0.99710 0.99631 Non Coding 0.99731 0.99978 0.99854 UTR 0.91810 0.94667 0.93217 Phase 0 0.99286 0.97203 0.98233 Coding 0.99762 0.97442 0.98588 Phase 1 1.00000 0.96886 0.98418 Intron 0.98846 0.98587 0.98716 Phase 2 1.00000 0.97222 0.98592 Subgenic 0.99126 0.98232 0.98677 Coding 0.99762 0.97103 0.98415 Genic 0.98069 0.97734 0.97901 BP_Extractor for Sequence contig_22653 - ID 381 Forward for Sequence contig_22653 - ID 381 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9763 0 0 0 Non Coding 9958 17 16 16 UTR 13 127 1 0 Phase 0 0 196 0 0 Coding 0 0 637 18 Phase 1 0 0 197 0 Intron 0 0 1 37 Phase 2 0 0 0 197 Precision Recall F1 Precision Recall F1 Intergenic 0.99867 1.00000 0.99933 Non Coding 1.00000 0.99510 0.99755 UTR 1.00000 0.90071 0.94776 Phase 0 0.92019 1.00000 0.95844 Coding 0.99687 0.97252 0.98454 Phase 1 0.92488 1.00000 0.96098 Intron 0.67273 0.97368 0.79570 Phase 2 0.92488 1.00000 0.96098 Subgenic 0.97118 0.97258 0.97188 Coding 0.92332 1.00000 0.96013 Genic 0.97564 0.96043 0.96798 Reverse for Sequence contig_22653 - ID 381 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8656 4 0 0 Non Coding 9607 6 4 5 UTR 4 420 0 0 Phase 0 7 317 0 0 Coding 0 1 965 21 Phase 1 7 0 319 0 Intron 0 1 4 521 Phase 2 7 0 0 318 Precision Recall F1 Precision Recall F1 Intergenic 0.99954 0.99954 0.99954 Non Coding 0.99782 0.99844 0.99813 UTR 0.98592 0.99057 0.98824 Phase 0 0.98142 0.97840 0.97991 Coding 0.99587 0.97771 0.98671 Phase 1 0.98762 0.97853 0.98305 Intron 0.96125 0.99049 0.97566 Phase 2 0.98452 0.97846 0.98148 Subgenic 0.98345 0.98215 0.98280 Coding 0.98452 0.97846 0.98148 Genic 0.98400 0.98400 0.98400 BP_Extractor for Sequence contig_22670 - ID 382 Forward for Sequence contig_22670 - ID 382 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7755 9 0 0 Non Coding 8773 1 3 4 UTR 83 472 0 3 Phase 0 7 536 0 0 Coding 28 22 1608 0 Phase 1 5 0 534 0 Intron 72 7 3 338 Phase 2 4 0 0 533 Precision Recall F1 Precision Recall F1 Intergenic 0.97695 0.99884 0.98777 Non Coding 0.99818 0.99909 0.99863 UTR 0.92549 0.84588 0.88390 Phase 0 0.99814 0.98711 0.99259 Coding 0.99814 0.96984 0.98379 Phase 1 0.99441 0.99072 0.99257 Intron 0.99120 0.80476 0.88830 Phase 2 0.99255 0.99255 0.99255 Subgenic 0.99693 0.93648 0.96576 Coding 0.99503 0.99012 0.99257 Genic 0.98213 0.91730 0.94861 Reverse for Sequence contig_22670 - ID 382 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7794 4 0 64 Non Coding 8799 42 54 48 UTR 14 199 2 22 Phase 0 11 483 0 0 Coding 20 9 1552 32 Phase 1 8 0 471 0 Intron 34 2 21 631 Phase 2 7 0 0 477 Precision Recall F1 Precision Recall F1 Intergenic 0.99135 0.99135 0.99135 Non Coding 0.99705 0.98390 0.99043 UTR 0.92991 0.83966 0.88248 Phase 0 0.92000 0.97773 0.94799 Coding 0.98540 0.96218 0.97365 Phase 1 0.89714 0.98330 0.93825 Intron 0.84246 0.91715 0.87822 Phase 2 0.90857 0.98554 0.94549 Subgenic 0.93933 0.94872 0.94400 Coding 0.90857 0.98216 0.94393 Genic 0.93853 0.93853 0.93853 BP_Extractor for Sequence contig_22951 - ID 383 Forward for Sequence contig_22951 - ID 383 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5926 0 0 0 Non Coding 7433 0 0 0 UTR 28 0 0 0 Phase 0 125 0 0 0 Coding 1188 0 0 0 Phase 1 119 0 0 0 Intron 650 0 0 0 Phase 2 115 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.76052 1.00000 0.86397 Non Coding 0.95393 1.00000 0.97642 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_22951 - ID 383 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7774 0 0 0 Non Coding 7786 0 0 0 UTR 7 0 0 0 Phase 0 2 0 0 0 Coding 11 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99769 1.00000 0.99884 Non Coding 0.99923 1.00000 0.99961 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_22962 - ID 384 Forward for Sequence contig_22962 - ID 384 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19756 0 0 0 Non Coding 19760 0 0 0 UTR 6 0 0 0 Phase 0 5 0 0 0 Coding 10 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99919 1.00000 0.99960 Non Coding 0.99939 1.00000 0.99970 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_22962 - ID 384 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3613 19 0 1 Non Coding 18258 56 55 57 UTR 6 266 1 13 Phase 0 7 439 0 0 Coding 7 0 1443 63 Phase 1 10 0 440 0 Intron 0 0 41 14299 Phase 2 12 0 0 438 Precision Recall F1 Precision Recall F1 Intergenic 0.99641 0.99449 0.99545 Non Coding 0.99841 0.99088 0.99463 UTR 0.93333 0.93007 0.93170 Phase 0 0.88687 0.98430 0.93305 Coding 0.97172 0.95373 0.96264 Phase 1 0.88889 0.97778 0.93122 Intron 0.99464 0.99714 0.99589 Phase 2 0.88485 0.97333 0.92698 Subgenic 0.99250 0.99300 0.99275 Coding 0.88687 0.97845 0.93041 Genic 0.99145 0.99188 0.99167 BP_Extractor for Sequence contig_22998 - ID 385 Forward for Sequence contig_22998 - ID 385 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2844 0 0 0 Non Coding 3042 12 16 16 UTR 0 103 13 0 Phase 0 0 198 0 0 Coding 1 0 617 0 Phase 1 0 0 194 0 Intron 3 0 0 91 Phase 2 0 0 0 194 Precision Recall F1 Precision Recall F1 Intergenic 0.99860 1.00000 0.99930 Non Coding 1.00000 0.98574 0.99282 UTR 1.00000 0.88793 0.94064 Phase 0 0.94286 1.00000 0.97059 Coding 0.97937 0.99838 0.98878 Phase 1 0.92381 1.00000 0.96040 Intron 1.00000 0.96809 0.98378 Phase 2 0.92381 1.00000 0.96040 Subgenic 0.98197 0.99438 0.98814 Coding 0.93016 1.00000 0.96382 Genic 0.98422 0.97947 0.98184 Reverse for Sequence contig_22998 - ID 385 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2374 0 0 0 Non Coding 3116 0 0 0 UTR 58 0 0 0 Phase 0 186 0 0 0 Coding 975 0 0 0 Phase 1 184 0 0 0 Intron 265 0 0 0 Phase 2 186 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.64651 1.00000 0.78531 Non Coding 0.84858 1.00000 0.91809 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_23074 - ID 386 Forward for Sequence contig_23074 - ID 386 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2382 0 0 86 Non Coding 4520 9 9 10 UTR 15 5 1 6 Phase 0 3 66 1 0 Coding 54 1 214 36 Phase 1 4 0 66 0 Intron 482 0 13 1465 Phase 2 5 1 0 66 Precision Recall F1 Precision Recall F1 Intergenic 0.81214 0.96515 0.88206 Non Coding 0.99735 0.99384 0.99559 UTR 0.83333 0.18519 0.30303 Phase 0 0.86842 0.94286 0.90411 Coding 0.93860 0.70164 0.80300 Phase 1 0.86842 0.94286 0.90411 Intron 0.91965 0.74745 0.82466 Phase 2 0.86842 0.91667 0.89189 Subgenic 0.92202 0.74128 0.82183 Coding 0.86842 0.93396 0.90000 Genic 0.92173 0.73473 0.81767 Reverse for Sequence contig_23074 - ID 386 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4760 0 0 0 Non Coding 4760 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_23125 - ID 387 Forward for Sequence contig_23125 - ID 387 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22036 0 0 0 Non Coding 22112 0 0 0 UTR 48 0 0 0 Phase 0 54 0 0 0 Coding 169 0 0 0 Phase 1 49 0 0 0 Intron 21 0 0 0 Phase 2 59 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98931 1.00000 0.99463 Non Coding 0.99273 1.00000 0.99635 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_23125 - ID 387 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19164 1 23 6 Non Coding 20394 26 45 30 UTR 38 329 4 7 Phase 0 31 571 0 0 Coding 68 12 1756 62 Phase 1 32 0 552 0 Intron 26 0 8 770 Phase 2 26 0 0 567 Precision Recall F1 Precision Recall F1 Intergenic 0.99316 0.99844 0.99579 Non Coding 0.99565 0.99507 0.99536 UTR 0.96199 0.87037 0.91389 Phase 0 0.95645 0.94850 0.95246 Coding 0.98046 0.92518 0.95202 Phase 1 0.92462 0.94521 0.93480 Intron 0.91124 0.95771 0.93390 Phase 2 0.94975 0.95616 0.95294 Subgenic 0.95827 0.93486 0.94642 Coding 0.94361 0.94997 0.94678 Genic 0.95870 0.92695 0.94256 BP_Extractor for Sequence contig_23146 - ID 388 Forward for Sequence contig_23146 - ID 388 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3086 0 0 0 Non Coding 3132 0 0 0 UTR 1 0 0 0 Phase 0 8 0 0 0 Coding 48 0 0 0 Phase 1 8 0 0 0 Intron 20 0 0 0 Phase 2 7 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97813 1.00000 0.98894 Non Coding 0.99271 1.00000 0.99634 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_23146 - ID 388 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3155 0 0 0 Non Coding 3155 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_23283 - ID 389 Forward for Sequence contig_23283 - ID 389 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8891 0 0 0 Non Coding 10096 0 0 1 UTR 2 365 0 11 Phase 0 4 503 0 0 Coding 1 5 1508 5 Phase 1 6 0 503 0 Intron 11 0 1 820 Phase 2 5 0 0 502 Precision Recall F1 Precision Recall F1 Intergenic 0.99843 1.00000 0.99921 Non Coding 0.99852 0.99990 0.99921 UTR 0.98649 0.96561 0.97594 Phase 0 1.00000 0.99211 0.99604 Coding 0.99934 0.99276 0.99604 Phase 1 1.00000 0.98821 0.99407 Intron 0.98086 0.98558 0.98321 Phase 2 0.99801 0.99014 0.99406 Subgenic 0.99275 0.99022 0.99148 Coding 0.99934 0.99015 0.99472 Genic 0.99190 0.98681 0.98935 Reverse for Sequence contig_23283 - ID 389 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7291 23 11 123 Non Coding 8921 83 82 83 UTR 24 280 0 8 Phase 0 13 806 0 0 Coding 45 18 2601 9 Phase 1 10 0 807 0 Intron 29 32 55 1071 Phase 2 9 0 0 806 Precision Recall F1 Precision Recall F1 Intergenic 0.98674 0.97892 0.98281 Non Coding 0.99643 0.97295 0.98455 UTR 0.79320 0.89744 0.84211 Phase 0 0.90664 0.98413 0.94379 Coding 0.97525 0.97306 0.97416 Phase 1 0.90776 0.98776 0.94607 Intron 0.88439 0.90227 0.89324 Phase 2 0.90664 0.98896 0.94601 Subgenic 0.94688 0.95130 0.94908 Coding 0.90701 0.98694 0.94529 Genic 0.93406 0.94727 0.94062 BP_Extractor for Sequence contig_23398 - ID 390 Forward for Sequence contig_23398 - ID 390 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20124 0 0 0 Non Coding 20124 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_23398 - ID 390 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11495 23 4 0 Non Coding 16359 52 56 45 UTR 41 890 27 12 Phase 0 8 1195 0 0 Coding 8 2 3685 40 Phase 1 8 0 1191 0 Intron 36 21 25 3815 Phase 2 8 0 0 1202 Precision Recall F1 Precision Recall F1 Intergenic 0.99266 0.99766 0.99515 Non Coding 0.99854 0.99073 0.99462 UTR 0.95085 0.91753 0.93389 Phase 0 0.95830 0.99335 0.97551 Coding 0.98503 0.98661 0.98582 Phase 1 0.95509 0.99333 0.97383 Intron 0.98655 0.97896 0.98274 Phase 2 0.96391 0.99339 0.97843 Subgenic 0.98580 0.98270 0.98425 Coding 0.95910 0.99336 0.97593 Genic 0.98198 0.97535 0.97865 BP_Extractor for Sequence contig_23612 - ID 391 Forward for Sequence contig_23612 - ID 391 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17923 12 250 59 Non Coding 21134 221 227 232 UTR 46 179 21 7 Phase 0 13 528 0 0 Coding 81 0 1947 43 Phase 1 14 0 522 0 Intron 29 1 29 2797 Phase 2 16 0 0 517 Precision Recall F1 Precision Recall F1 Intergenic 0.99137 0.98241 0.98687 Non Coding 0.99797 0.96883 0.98318 UTR 0.93229 0.70751 0.80449 Phase 0 0.70494 0.97597 0.81860 Coding 0.86649 0.94013 0.90181 Phase 1 0.69693 0.97388 0.81245 Intron 0.96249 0.97934 0.97084 Phase 2 0.69025 0.96998 0.80655 Subgenic 0.92063 0.96286 0.94127 Coding 0.69737 0.97329 0.81255 Genic 0.92105 0.95039 0.93549 Reverse for Sequence contig_23612 - ID 391 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21924 1 0 0 Non Coding 22543 8 7 9 UTR 239 125 7 0 Phase 0 104 171 0 0 Coding 432 0 518 0 Phase 1 120 0 172 0 Intron 92 0 12 74 Phase 2 120 0 0 170 Precision Recall F1 Precision Recall F1 Intergenic 0.96637 0.99995 0.98287 Non Coding 0.98497 0.99894 0.99190 UTR 0.99206 0.33693 0.50302 Phase 0 0.95531 0.62182 0.75330 Coding 0.96462 0.54526 0.69670 Phase 1 0.96089 0.58904 0.73036 Intron 1.00000 0.41573 0.58730 Phase 2 0.94972 0.58621 0.72495 Subgenic 0.96890 0.52482 0.68085 Coding 0.95531 0.59860 0.73601 Genic 0.97286 0.47832 0.64132 BP_Extractor for Sequence contig_23761 - ID 392 Forward for Sequence contig_23761 - ID 392 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18729 4 0 0 Non Coding 19517 3 5 5 UTR 22 188 9 47 Phase 0 56 206 0 0 Coding 120 2 616 2 Phase 1 40 0 204 0 Intron 8 0 2 540 Phase 2 49 0 0 204 Precision Recall F1 Precision Recall F1 Intergenic 0.99205 0.99979 0.99591 Non Coding 0.99263 0.99933 0.99597 UTR 0.96907 0.70677 0.81739 Phase 0 0.98565 0.78626 0.87473 Coding 0.98246 0.83243 0.90124 Phase 1 0.97608 0.83607 0.90066 Intron 0.91681 0.98182 0.94820 Phase 2 0.97608 0.80632 0.88312 Subgenic 0.95066 0.89612 0.92259 Coding 0.97927 0.80896 0.88600 Genic 0.95319 0.86375 0.90627 Reverse for Sequence contig_23761 - ID 392 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13578 8 241 47 Non Coding 16211 224 220 215 UTR 25 350 22 10 Phase 0 25 1056 39 0 Coding 57 39 3683 133 Phase 1 33 0 1075 56 Intron 262 23 56 1755 Phase 2 18 54 0 1063 Precision Recall F1 Precision Recall F1 Intergenic 0.97529 0.97867 0.97698 Non Coding 0.99533 0.96094 0.97783 UTR 0.83333 0.85995 0.84643 Phase 0 0.79160 0.94286 0.86064 Coding 0.92029 0.94146 0.93076 Phase 1 0.80585 0.92354 0.86069 Intron 0.90231 0.83731 0.86860 Phase 2 0.79685 0.93656 0.86108 Subgenic 0.91441 0.90513 0.90974 Coding 0.79810 0.93419 0.86080 Genic 0.90906 0.90226 0.90565 BP_Extractor for Sequence contig_23843 - ID 393 Forward for Sequence contig_23843 - ID 393 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12100 0 0 19 Non Coding 14745 19 17 20 UTR 1 798 2 30 Phase 0 8 1010 2 0 Coding 1 9 3071 30 Phase 1 11 0 1012 3 Intron 22 1 20 1761 Phase 2 8 2 0 1008 Precision Recall F1 Precision Recall F1 Intergenic 0.99802 0.99843 0.99823 Non Coding 0.99817 0.99622 0.99719 UTR 0.98762 0.96029 0.97376 Phase 0 0.97963 0.99020 0.98489 Coding 0.99289 0.98714 0.99001 Phase 1 0.98157 0.98635 0.98396 Intron 0.95707 0.97616 0.96652 Phase 2 0.97769 0.99018 0.98389 Subgenic 0.97953 0.98311 0.98132 Coding 0.97963 0.98890 0.98425 Genic 0.98067 0.97981 0.98024 Reverse for Sequence contig_23843 - ID 393 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17800 0 0 0 Non Coding 17828 0 0 0 UTR 19 0 0 0 Phase 0 10 0 0 0 Coding 44 0 0 0 Phase 1 13 0 0 0 Intron 2 0 0 0 Phase 2 14 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99636 1.00000 0.99818 Non Coding 0.99793 1.00000 0.99896 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_23911 - ID 394 Forward for Sequence contig_23911 - ID 394 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2205 0 0 0 Non Coding 2218 0 0 0 UTR 3 0 0 0 Phase 0 4 0 0 0 Coding 19 0 0 0 Phase 1 5 0 0 0 Intron 6 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98746 1.00000 0.99369 Non Coding 0.99328 1.00000 0.99663 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_23911 - ID 394 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2233 0 0 0 Non Coding 2233 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_23922 - ID 395 Forward for Sequence contig_23922 - ID 395 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13560 1 61 54 Non Coding 13872 54 60 50 UTR 14 53 3 0 Phase 0 3 239 0 6 Coding 54 1 822 0 Phase 1 2 3 233 0 Intron 15 0 2 128 Phase 2 3 0 3 240 Precision Recall F1 Precision Recall F1 Intergenic 0.99392 0.99152 0.99272 Non Coding 0.99942 0.98832 0.99384 UTR 0.96364 0.75714 0.84800 Phase 0 0.80743 0.96371 0.87868 Coding 0.92568 0.93729 0.93144 Phase 1 0.78716 0.97899 0.87266 Intron 0.70330 0.88276 0.78287 Phase 2 0.81081 0.97561 0.88561 Subgenic 0.88785 0.92955 0.90822 Coding 0.80180 0.97268 0.87901 Genic 0.89156 0.91850 0.90483 Reverse for Sequence contig_23922 - ID 395 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10002 6 0 0 Non Coding 12481 42 43 40 UTR 103 492 17 0 Phase 0 8 710 4 1 Coding 35 9 2225 21 Phase 1 7 0 708 2 Intron 6 14 23 1815 Phase 2 7 3 0 712 Precision Recall F1 Precision Recall F1 Intergenic 0.98581 0.99940 0.99256 Non Coding 0.99824 0.99008 0.99415 UTR 0.94434 0.80392 0.86849 Phase 0 0.94040 0.98202 0.96076 Coding 0.98234 0.97162 0.97695 Phase 1 0.93775 0.98745 0.96196 Intron 0.98856 0.97686 0.98267 Phase 2 0.94305 0.98615 0.96412 Subgenic 0.98513 0.97396 0.97951 Coding 0.94040 0.98520 0.96228 Genic 0.98053 0.95210 0.96611 BP_Extractor for Sequence contig_23985 - ID 396 Forward for Sequence contig_23985 - ID 396 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19514 13 222 0 Non Coding 21246 324 326 341 UTR 27 816 20 8 Phase 0 8 1302 2 0 Coding 8 9 4582 49 Phase 1 8 0 1300 1 Intron 3 21 60 801 Phase 2 7 2 0 1286 Precision Recall F1 Precision Recall F1 Intergenic 0.99806 0.98810 0.99305 Non Coding 0.99892 0.95543 0.97669 UTR 0.94994 0.93685 0.94335 Phase 0 0.79975 0.99238 0.88571 Coding 0.93817 0.98580 0.96139 Phase 1 0.79853 0.99312 0.88526 Intron 0.93357 0.90508 0.91910 Phase 2 0.78993 0.99305 0.87992 Subgenic 0.93748 0.97289 0.95486 Coding 0.79607 0.99285 0.88364 Genic 0.93910 0.96799 0.95333 Reverse for Sequence contig_23985 - ID 396 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12619 16 307 609 Non Coding 23044 707 723 720 UTR 35 243 23 14 Phase 0 12 316 0 0 Coding 274 2 2639 83 Phase 1 15 0 299 0 Intron 92 36 99 9062 Phase 2 14 0 0 303 Precision Recall F1 Precision Recall F1 Intergenic 0.96920 0.93122 0.94983 Non Coding 0.99822 0.91466 0.95462 UTR 0.81818 0.77143 0.79412 Phase 0 0.30890 0.96341 0.46780 Coding 0.86017 0.88025 0.87010 Phase 1 0.29256 0.95223 0.44760 Intron 0.92772 0.97556 0.95104 Phase 2 0.29619 0.95584 0.45224 Subgenic 0.91158 0.95231 0.93150 Coding 0.29922 0.95725 0.45592 Genic 0.90946 0.94779 0.92823 BP_Extractor for Sequence contig_23993 - ID 397 Forward for Sequence contig_23993 - ID 397 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10294 0 0 0 Non Coding 10699 0 0 0 UTR 127 0 0 0 Phase 0 262 0 0 0 Coding 1065 0 0 0 Phase 1 277 0 0 0 Intron 14 0 0 0 Phase 2 262 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89513 1.00000 0.94466 Non Coding 0.93035 1.00000 0.96392 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_23993 - ID 397 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6871 0 0 0 Non Coding 10013 37 41 40 UTR 178 108 13 17 Phase 0 16 444 0 0 Coding 48 2 1413 13 Phase 1 15 0 439 0 Intron 414 0 16 2407 Phase 2 14 0 0 441 Precision Recall F1 Precision Recall F1 Intergenic 0.91479 1.00000 0.95550 Non Coding 0.99553 0.98835 0.99193 UTR 0.98182 0.34177 0.50704 Phase 0 0.92308 0.96522 0.94368 Coding 0.97989 0.95732 0.96847 Phase 1 0.91458 0.96696 0.94004 Intron 0.98769 0.84843 0.91278 Phase 2 0.91684 0.96923 0.94231 Subgenic 0.98479 0.88569 0.93262 Coding 0.91817 0.96713 0.94201 Genic 0.98471 0.84856 0.91158 BP_Extractor for Sequence contig_24279 - ID 398 Forward for Sequence contig_24279 - ID 398 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7276 0 0 0 Non Coding 7276 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_24279 - ID 398 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7262 0 0 0 Non Coding 7268 0 0 0 UTR 7 0 0 0 Phase 0 2 0 0 0 Coding 7 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99808 1.00000 0.99904 Non Coding 0.99890 1.00000 0.99945 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_24297 - ID 399 Forward for Sequence contig_24297 - ID 399 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7827 0 0 0 Non Coding 7949 0 0 0 UTR 77 0 0 0 Phase 0 169 0 0 0 Coding 549 0 0 0 Phase 1 176 0 0 0 Intron 12 0 0 0 Phase 2 171 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92463 1.00000 0.96084 Non Coding 0.93904 1.00000 0.96856 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_24297 - ID 399 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8296 0 0 0 Non Coding 8388 0 0 0 UTR 24 0 0 0 Phase 0 29 0 0 0 Coding 131 0 0 0 Phase 1 20 0 0 0 Intron 14 0 0 0 Phase 2 28 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98004 1.00000 0.98992 Non Coding 0.99090 1.00000 0.99543 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_24391 - ID 400 Forward for Sequence contig_24391 - ID 400 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11923 18 2 31 Non Coding 14317 26 24 27 UTR 31 537 31 0 Phase 0 9 794 0 0 Coding 9 4 2426 22 Phase 1 9 0 796 0 Intron 7 2 1 1759 Phase 2 8 0 0 793 Precision Recall F1 Precision Recall F1 Intergenic 0.99607 0.99574 0.99591 Non Coding 0.99819 0.99465 0.99642 UTR 0.95722 0.89649 0.92586 Phase 0 0.96829 0.98879 0.97843 Coding 0.98618 0.98578 0.98598 Phase 1 0.97073 0.98882 0.97969 Intron 0.97075 0.99435 0.98241 Phase 2 0.96707 0.99001 0.97841 Subgenic 0.97963 0.98936 0.98447 Coding 0.96870 0.98921 0.97885 Genic 0.97703 0.97784 0.97744 Reverse for Sequence contig_24391 - ID 400 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16803 0 0 0 Non Coding 16803 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_24507 - ID 401 Forward for Sequence contig_24507 - ID 401 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3820 0 0 0 Non Coding 3820 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_24507 - ID 401 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2775 0 0 0 Non Coding 3660 0 0 0 UTR 175 0 0 0 Phase 0 55 0 0 0 Coding 244 0 0 0 Phase 1 51 0 0 0 Intron 626 0 0 0 Phase 2 54 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.72644 1.00000 0.84155 Non Coding 0.95812 1.00000 0.97861 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_24519 - ID 402 Forward for Sequence contig_24519 - ID 402 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23741 13 260 166 Non Coding 41033 304 287 306 UTR 173 635 2 14 Phase 0 246 762 0 5 Coding 750 8 2923 72 Phase 1 249 4 777 0 Intron 1110 0 25 15088 Phase 2 242 0 6 759 Precision Recall F1 Precision Recall F1 Intergenic 0.92112 0.98184 0.95051 Non Coding 0.98236 0.97861 0.98048 UTR 0.96799 0.77063 0.85811 Phase 0 0.71215 0.75222 0.73164 Coding 0.91059 0.77884 0.83958 Phase 1 0.72617 0.75437 0.74000 Intron 0.98357 0.93004 0.95606 Phase 2 0.70935 0.75372 0.73086 Subgenic 0.97094 0.90163 0.93500 Coding 0.71589 0.75344 0.73419 Genic 0.97084 0.89644 0.93216 Reverse for Sequence contig_24519 - ID 402 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 39649 6 0 1 Non Coding 43444 16 18 17 UTR 51 164 7 1 Phase 0 118 361 6 15 Coding 434 6 1187 33 Phase 1 109 16 359 7 Intron 247 1 3 3190 Phase 2 112 6 16 360 Precision Recall F1 Precision Recall F1 Intergenic 0.98187 0.99982 0.99077 Non Coding 0.99226 0.99883 0.99553 UTR 0.92655 0.73543 0.82000 Phase 0 0.90476 0.72200 0.80311 Coding 0.99165 0.71506 0.83094 Phase 1 0.89975 0.73116 0.80674 Intron 0.98915 0.92706 0.95710 Phase 2 0.90226 0.72874 0.80627 Subgenic 0.98982 0.85807 0.91925 Coding 0.90226 0.72727 0.80537 Genic 0.98739 0.85293 0.91525 BP_Extractor for Sequence contig_24591 - ID 403 Forward for Sequence contig_24591 - ID 403 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9815 0 0 0 Non Coding 9830 0 0 0 UTR 6 0 0 0 Phase 0 5 0 0 0 Coding 20 0 0 0 Phase 1 3 0 0 0 Intron 3 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99705 1.00000 0.99852 Non Coding 0.99858 1.00000 0.99929 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_24591 - ID 403 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7412 8 0 0 Non Coding 8558 4 3 4 UTR 24 362 2 2 Phase 0 12 412 0 0 Coding 96 9 1246 6 Phase 1 14 0 413 0 Intron 12 0 0 665 Phase 2 12 0 0 412 Precision Recall F1 Precision Recall F1 Intergenic 0.98250 0.99892 0.99064 Non Coding 0.99558 0.99872 0.99715 UTR 0.95515 0.92821 0.94148 Phase 0 0.99038 0.97170 0.98095 Coding 0.99840 0.91820 0.95662 Phase 1 0.99279 0.96721 0.97983 Intron 0.98811 0.98227 0.98519 Phase 2 0.99038 0.97170 0.98095 Subgenic 0.99479 0.93953 0.96637 Coding 0.99119 0.97020 0.98058 Genic 0.98826 0.93771 0.96232 BP_Extractor for Sequence contig_24594 - ID 404 Forward for Sequence contig_24594 - ID 404 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14672 2 126 44 Non Coding 18173 120 114 100 UTR 37 269 3 9 Phase 0 28 349 0 0 Coding 145 2 1267 11 Phase 1 29 0 355 0 Intron 236 2 11 2830 Phase 2 29 0 0 369 Precision Recall F1 Precision Recall F1 Intergenic 0.97230 0.98841 0.98029 Non Coding 0.99529 0.98195 0.98858 UTR 0.97818 0.84591 0.90725 Phase 0 0.74414 0.92573 0.82506 Coding 0.90050 0.88912 0.89477 Phase 1 0.75693 0.92448 0.83236 Intron 0.97789 0.91913 0.94760 Phase 2 0.78678 0.92714 0.85121 Subgenic 0.95257 0.90964 0.93061 Coding 0.76262 0.92580 0.83632 Genic 0.95411 0.90543 0.92913 Reverse for Sequence contig_24594 - ID 404 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11988 6 0 0 Non Coding 18165 13 11 14 UTR 2 260 10 2 Phase 0 2 485 0 0 Coding 0 1 1463 9 Phase 1 3 0 487 0 Intron 4612 0 21 1292 Phase 2 2 0 0 484 Precision Recall F1 Precision Recall F1 Intergenic 0.72208 0.99950 0.83844 Non Coding 0.99961 0.99791 0.99876 UTR 0.97378 0.94891 0.96118 Phase 0 0.97390 0.99589 0.98477 Coding 0.97925 0.99321 0.98618 Phase 1 0.97791 0.99388 0.98583 Intron 0.99156 0.21806 0.35750 Phase 2 0.97189 0.99588 0.98374 Subgenic 0.98498 0.37240 0.54046 Coding 0.97456 0.99522 0.98478 Genic 0.98401 0.39299 0.56166 BP_Extractor for Sequence contig_24656 - ID 405 Forward for Sequence contig_24656 - ID 405 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9382 0 0 0 Non Coding 9382 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_24656 - ID 405 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9143 0 0 0 Non Coding 9260 0 0 0 UTR 18 0 0 0 Phase 0 39 0 0 0 Coding 216 0 0 0 Phase 1 45 0 0 0 Intron 5 0 0 0 Phase 2 38 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97453 1.00000 0.98710 Non Coding 0.98700 1.00000 0.99346 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_24698 - ID 406 Forward for Sequence contig_24698 - ID 406 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8619 14 0 24 Non Coding 10236 101 113 95 UTR 3 390 28 0 Phase 0 5 2105 0 0 Coding 59 5 6584 9 Phase 1 4 0 2093 0 Intron 0 8 6 1119 Phase 2 5 0 0 2111 Precision Recall F1 Precision Recall F1 Intergenic 0.99286 0.99561 0.99423 Non Coding 0.99863 0.97070 0.98447 UTR 0.93525 0.92637 0.93079 Phase 0 0.95422 0.99763 0.97544 Coding 0.99486 0.98903 0.99194 Phase 1 0.94878 0.99809 0.97281 Intron 0.97135 0.98764 0.97943 Phase 2 0.95694 0.99764 0.97686 Subgenic 0.99138 0.98883 0.99010 Coding 0.95331 0.99779 0.97504 Genic 0.98852 0.98563 0.98707 Reverse for Sequence contig_24698 - ID 406 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16848 0 0 0 Non Coding 16859 0 0 0 UTR 9 0 0 0 Phase 0 3 0 0 0 Coding 11 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99881 1.00000 0.99941 Non Coding 0.99947 1.00000 0.99973 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_24749 - ID 407 Forward for Sequence contig_24749 - ID 407 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9636 6 133 57 Non Coding 14985 880 883 878 UTR 22 569 49 14 Phase 0 18 1409 1 0 Coding 38 8 6536 150 Phase 1 19 0 1405 0 Intron 266 82 149 4194 Phase 2 20 0 0 1411 Precision Recall F1 Precision Recall F1 Intergenic 0.96728 0.98007 0.97363 Non Coding 0.99621 0.85016 0.91741 UTR 0.85564 0.87003 0.86277 Phase 0 0.61555 0.98669 0.75814 Coding 0.95180 0.97089 0.96125 Phase 1 0.61381 0.98666 0.75680 Intron 0.94994 0.89405 0.92115 Phase 2 0.61643 0.98602 0.75860 Subgenic 0.95107 0.93933 0.94517 Coding 0.61526 0.98646 0.75785 Genic 0.94576 0.93558 0.94064 Reverse for Sequence contig_24749 - ID 407 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18150 3 12 0 Non Coding 20064 23 18 18 UTR 45 599 1 2 Phase 0 30 566 0 0 Coding 164 13 1734 32 Phase 1 26 0 571 0 Intron 138 2 20 994 Phase 2 22 0 0 571 Precision Recall F1 Precision Recall F1 Intergenic 0.98124 0.99917 0.99013 Non Coding 0.99613 0.99707 0.99660 UTR 0.97083 0.92581 0.94778 Phase 0 0.96095 0.94966 0.95527 Coding 0.98132 0.89243 0.93477 Phase 1 0.96944 0.95645 0.96290 Intron 0.96693 0.86135 0.91109 Phase 2 0.96944 0.96290 0.96616 Subgenic 0.97603 0.88085 0.92600 Coding 0.96661 0.95633 0.96144 Genic 0.97509 0.88862 0.92985 BP_Extractor for Sequence contig_24777 - ID 408 Forward for Sequence contig_24777 - ID 408 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8225 0 0 0 Non Coding 8772 0 0 0 UTR 68 26 0 0 Phase 0 15 196 0 0 Coding 92 0 588 0 Phase 1 9 0 196 0 Intron 400 0 0 0 Phase 2 15 0 0 196 Precision Recall F1 Precision Recall F1 Intergenic 0.93625 1.00000 0.96708 Non Coding 0.99557 1.00000 0.99778 UTR 1.00000 0.27660 0.43333 Phase 0 1.00000 0.92891 0.96314 Coding 1.00000 0.86471 0.92744 Phase 1 1.00000 0.95610 0.97756 Intron NaN 0.00000 0.00000 Phase 2 1.00000 0.92891 0.96314 Subgenic 1.00000 0.54444 0.70504 Coding 1.00000 0.93780 0.96790 Genic 1.00000 0.52300 0.68680 Reverse for Sequence contig_24777 - ID 408 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9392 0 0 0 Non Coding 9396 0 0 0 UTR 4 0 0 0 Phase 0 1 0 0 0 Coding 3 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99926 1.00000 0.99963 Non Coding 0.99968 1.00000 0.99984 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_24819 - ID 409 Forward for Sequence contig_24819 - ID 409 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16725 7 71 0 Non Coding 17766 143 155 160 UTR 19 463 16 37 Phase 0 20 342 4 0 Coding 81 9 1358 37 Phase 1 11 0 330 4 Intron 21 20 22 394 Phase 2 16 4 0 325 Precision Recall F1 Precision Recall F1 Intergenic 0.99282 0.99536 0.99409 Non Coding 0.99736 0.97487 0.98599 UTR 0.92786 0.86542 0.89555 Phase 0 0.69939 0.93443 0.80000 Coding 0.92570 0.91448 0.92005 Phase 1 0.67485 0.95652 0.79137 Intron 0.84188 0.86214 0.85189 Phase 2 0.66462 0.94203 0.77938 Subgenic 0.90543 0.90216 0.90379 Coding 0.67962 0.94413 0.79033 Genic 0.91002 0.89423 0.90206 Reverse for Sequence contig_24819 - ID 409 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19280 0 0 0 Non Coding 19280 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_24820 - ID 410 Forward for Sequence contig_24820 - ID 410 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6330 0 0 0 Non Coding 6342 0 0 0 UTR 4 0 0 0 Phase 0 3 0 0 0 Coding 17 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99669 1.00000 0.99834 Non Coding 0.99858 1.00000 0.99929 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_24820 - ID 410 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6350 0 0 0 Non Coding 6341 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 1 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99984 1.00000 0.99992 Non Coding 0.99843 1.00000 0.99921 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_24834 - ID 411 Forward for Sequence contig_24834 - ID 411 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 32714 1 36 1 Non Coding 36664 304 311 295 UTR 107 83 20 0 Phase 0 1058 290 0 0 Coding 5688 11 1716 1 Phase 1 1001 0 283 0 Intron 791 2 10 400 Phase 2 1076 0 0 299 Precision Recall F1 Precision Recall F1 Intergenic 0.83242 0.99884 0.90807 Non Coding 0.92123 0.97578 0.94772 UTR 0.85567 0.39524 0.54072 Phase 0 0.48822 0.21513 0.29866 Coding 0.96296 0.23139 0.37312 Phase 1 0.47643 0.22040 0.30138 Intron 0.99502 0.33250 0.49844 Phase 2 0.50337 0.21745 0.30371 Subgenic 0.96886 0.24550 0.39174 Coding 0.48934 0.21762 0.30126 Genic 0.96405 0.24907 0.39586 Reverse for Sequence contig_24834 - ID 411 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 36074 0 0 2 Non Coding 37832 47 52 54 UTR 65 290 20 11 Phase 0 197 998 0 0 Coding 736 4 3085 31 Phase 1 206 0 993 0 Intron 377 25 30 831 Phase 2 211 0 0 991 Precision Recall F1 Precision Recall F1 Intergenic 0.96838 0.99994 0.98391 Non Coding 0.98403 0.99597 0.98996 UTR 0.90909 0.75130 0.82270 Phase 0 0.95502 0.83515 0.89107 Coding 0.98405 0.80005 0.88256 Phase 1 0.95024 0.82819 0.88503 Intron 0.94971 0.65796 0.77736 Phase 2 0.94833 0.82446 0.88206 Subgenic 0.97656 0.76499 0.85793 Coding 0.95120 0.82925 0.88605 Genic 0.97159 0.76403 0.85540 BP_Extractor for Sequence contig_24838 - ID 412 Forward for Sequence contig_24838 - ID 412 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22681 11 249 46 Non Coding 24293 304 300 306 UTR 174 280 20 8 Phase 0 42 300 0 0 Coding 128 7 1519 115 Phase 1 41 0 304 0 Intron 60 10 24 896 Phase 2 40 0 0 298 Precision Recall F1 Precision Recall F1 Intergenic 0.98429 0.98669 0.98549 Non Coding 0.99496 0.96389 0.97918 UTR 0.90909 0.58091 0.70886 Phase 0 0.49669 0.87719 0.63425 Coding 0.83830 0.85868 0.84837 Phase 1 0.50331 0.88116 0.64067 Intron 0.84131 0.90505 0.87202 Phase 2 0.49338 0.88166 0.63270 Subgenic 0.83942 0.87532 0.85699 Coding 0.49779 0.88000 0.63588 Genic 0.84615 0.83153 0.83878 Reverse for Sequence contig_24838 - ID 412 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25171 1 1 0 Non Coding 25500 23 26 26 UTR 10 117 14 0 Phase 0 6 215 0 0 Coding 19 0 699 2 Phase 1 4 0 212 0 Intron 1 0 0 193 Phase 2 4 0 0 212 Precision Recall F1 Precision Recall F1 Intergenic 0.99881 0.99992 0.99936 Non Coding 0.99945 0.99707 0.99826 UTR 0.99153 0.82979 0.90347 Phase 0 0.90336 0.97285 0.93682 Coding 0.97899 0.97083 0.97490 Phase 1 0.89076 0.98148 0.93392 Intron 0.98974 0.99485 0.99229 Phase 2 0.89076 0.98148 0.93392 Subgenic 0.98130 0.97593 0.97861 Coding 0.89496 0.97856 0.93489 Genic 0.98247 0.95640 0.96926 BP_Extractor for Sequence contig_24889 - ID 413 Forward for Sequence contig_24889 - ID 413 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4150 0 0 0 Non Coding 4150 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_24889 - ID 413 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4145 0 0 0 Non Coding 4149 0 0 0 UTR 3 0 0 0 Phase 0 0 0 0 0 Coding 2 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99880 1.00000 0.99940 Non Coding 0.99976 1.00000 0.99988 UTR NaN 0.00000 0.00000 Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_25033 - ID 414 Forward for Sequence contig_25033 - ID 414 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15644 0 0 0 Non Coding 15644 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_25033 - ID 414 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9882 1 276 82 Non Coding 12680 465 482 479 UTR 38 46 6 14 Phase 0 31 491 0 0 Coding 180 11 2581 24 Phase 1 29 0 474 0 Intron 942 1 5 1555 Phase 2 36 0 0 477 Precision Recall F1 Precision Recall F1 Intergenic 0.89495 0.96494 0.92863 Non Coding 0.99249 0.89891 0.94338 UTR 0.77966 0.44231 0.56442 Phase 0 0.51360 0.94061 0.66441 Coding 0.89993 0.92310 0.91137 Phase 1 0.49582 0.94235 0.64976 Intron 0.92836 0.62125 0.74438 Phase 2 0.49895 0.92982 0.64942 Subgenic 0.91041 0.78052 0.84048 Coding 0.50279 0.93758 0.65456 Genic 0.90874 0.77401 0.83598 BP_Extractor for Sequence contig_25099 - ID 415 Forward for Sequence contig_25099 - ID 415 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8316 0 0 0 Non Coding 8316 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_25099 - ID 415 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8316 0 0 0 Non Coding 8316 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_25111 - ID 416 Forward for Sequence contig_25111 - ID 416 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9960 12 7 0 Non Coding 10298 21 16 25 UTR 105 164 7 0 Phase 0 5 303 0 0 Coding 7 6 958 19 Phase 1 9 0 308 0 Intron 7 7 0 32 Phase 2 7 0 0 299 Precision Recall F1 Precision Recall F1 Intergenic 0.98819 0.99810 0.99312 Non Coding 0.99796 0.99402 0.99599 UTR 0.86772 0.59420 0.70538 Phase 0 0.93519 0.98377 0.95886 Coding 0.98560 0.96768 0.97655 Phase 1 0.95062 0.97161 0.96100 Intron 0.62745 0.69565 0.65979 Phase 2 0.92284 0.97712 0.94921 Subgenic 0.96774 0.95560 0.96163 Coding 0.93621 0.97744 0.95638 Genic 0.95215 0.87957 0.91442 Reverse for Sequence contig_25111 - ID 416 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11291 0 0 0 Non Coding 11289 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99982 1.00000 0.99991 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN BP_Extractor for Sequence contig_25330 - ID 417 Forward for Sequence contig_25330 - ID 417 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12570 0 0 0 Non Coding 12570 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_25330 - ID 417 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12510 0 0 0 Non Coding 12551 0 0 0 UTR 19 0 0 0 Phase 0 6 0 0 0 Coding 34 0 0 0 Phase 1 7 0 0 0 Intron 7 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99523 1.00000 0.99761 Non Coding 0.99849 1.00000 0.99924 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_25486 - ID 418 Forward for Sequence contig_25486 - ID 418 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23863 0 0 0 Non Coding 24147 0 0 0 UTR 123 0 0 0 Phase 0 258 0 0 0 Coding 849 0 0 0 Phase 1 249 0 0 0 Intron 65 0 0 0 Phase 2 246 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95835 1.00000 0.97873 Non Coding 0.96976 1.00000 0.98465 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_25486 - ID 418 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22871 4 0 0 Non Coding 23791 14 19 20 UTR 6 72 0 2 Phase 0 3 353 0 0 Coding 4 1 1097 5 Phase 1 3 0 348 0 Intron 1 1 4 832 Phase 2 2 0 0 347 Precision Recall F1 Precision Recall F1 Intergenic 0.99952 0.99983 0.99967 Non Coding 0.99966 0.99778 0.99872 UTR 0.92308 0.90000 0.91139 Phase 0 0.96185 0.99157 0.97649 Coding 0.99637 0.99097 0.99366 Phase 1 0.94823 0.99145 0.96936 Intron 0.99166 0.99284 0.99225 Phase 2 0.94550 0.99427 0.96927 Subgenic 0.99433 0.99177 0.99305 Coding 0.95186 0.99242 0.97172 Genic 0.99158 0.98815 0.98986 BP_Extractor for Sequence contig_25574 - ID 419 Forward for Sequence contig_25574 - ID 419 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31943 0 0 0 Non Coding 32563 0 0 0 UTR 25 0 0 0 Phase 0 177 0 0 0 Coding 752 0 0 0 Phase 1 190 0 0 0 Intron 388 0 0 0 Phase 2 178 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96481 1.00000 0.98209 Non Coding 0.98354 1.00000 0.99170 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_25574 - ID 419 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33079 0 0 0 Non Coding 33099 0 0 0 UTR 11 0 0 0 Phase 0 3 0 0 0 Coding 18 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99912 1.00000 0.99956 Non Coding 0.99973 1.00000 0.99986 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_25898 - ID 420 Forward for Sequence contig_25898 - ID 420 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2923 3 5 62 Non Coding 4537 26 27 29 UTR 5 26 0 11 Phase 0 2 426 0 0 Coding 0 0 1346 20 Phase 1 3 0 425 0 Intron 29 0 5 1467 Phase 2 4 0 0 423 Precision Recall F1 Precision Recall F1 Intergenic 0.98850 0.97661 0.98252 Non Coding 0.99802 0.98225 0.99007 UTR 0.89655 0.61905 0.73239 Phase 0 0.94248 0.99533 0.96818 Coding 0.99263 0.98536 0.98898 Phase 1 0.94027 0.99299 0.96591 Intron 0.94038 0.97735 0.95851 Phase 2 0.93584 0.99063 0.96246 Subgenic 0.96468 0.98116 0.97285 Coding 0.93953 0.99299 0.96552 Genic 0.96401 0.97594 0.96994 Reverse for Sequence contig_25898 - ID 420 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4070 3 0 7 Non Coding 5263 5 5 7 UTR 0 210 0 6 Phase 0 2 206 0 0 Coding 0 2 632 5 Phase 1 2 0 206 0 Intron 8 5 1 953 Phase 2 2 0 0 204 Precision Recall F1 Precision Recall F1 Intergenic 0.99804 0.99755 0.99779 Non Coding 0.99886 0.99678 0.99782 UTR 0.95455 0.97222 0.96330 Phase 0 0.97630 0.99038 0.98329 Coding 0.99842 0.98905 0.99371 Phase 1 0.97630 0.99038 0.98329 Intron 0.98146 0.98552 0.98349 Phase 2 0.96682 0.99029 0.97842 Subgenic 0.98815 0.98692 0.98754 Coding 0.97314 0.99035 0.98167 Genic 0.98410 0.98518 0.98464 BP_Extractor for Sequence contig_25939 - ID 421 Forward for Sequence contig_25939 - ID 421 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18148 0 0 0 Non Coding 18179 0 0 0 UTR 17 0 0 0 Phase 0 8 0 0 0 Coding 37 0 0 0 Phase 1 8 0 0 0 Intron 0 0 0 0 Phase 2 7 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99703 1.00000 0.99851 Non Coding 0.99874 1.00000 0.99937 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_25939 - ID 421 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18195 0 0 0 Non Coding 18194 0 0 0 UTR 4 0 0 0 Phase 0 3 0 0 0 Coding 3 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99962 1.00000 0.99981 Non Coding 0.99956 1.00000 0.99978 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_25964 - ID 422 Forward for Sequence contig_25964 - ID 422 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12519 0 0 0 Non Coding 12519 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99992 1.00000 0.99996 Non Coding 0.99992 1.00000 0.99996 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_25964 - ID 422 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12496 0 0 0 Non Coding 12505 0 0 0 UTR 7 0 0 0 Phase 0 4 0 0 0 Coding 14 0 0 0 Phase 1 6 0 0 0 Intron 3 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99808 1.00000 0.99904 Non Coding 0.99880 1.00000 0.99940 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_26053 - ID 423 Forward for Sequence contig_26053 - ID 423 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21243 0 0 0 Non Coding 21584 0 0 0 UTR 267 0 0 0 Phase 0 123 0 0 0 Coding 438 0 0 0 Phase 1 121 0 0 0 Intron 0 0 0 0 Phase 2 120 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96788 1.00000 0.98368 Non Coding 0.98342 1.00000 0.99164 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_26053 - ID 423 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14322 26 142 116 Non Coding 17229 158 169 148 UTR 63 922 7 3 Phase 0 36 1387 0 3 Coding 187 2 4456 21 Phase 1 22 1 1376 0 Intron 64 18 33 1566 Phase 2 23 0 1 1395 Precision Recall F1 Precision Recall F1 Intergenic 0.97855 0.98056 0.97955 Non Coding 0.99532 0.97317 0.98412 UTR 0.95248 0.92663 0.93938 Phase 0 0.89715 0.97265 0.93338 Coding 0.96076 0.95499 0.95787 Phase 1 0.89004 0.98356 0.93447 Intron 0.91794 0.93159 0.92471 Phase 2 0.90233 0.98309 0.94098 Subgenic 0.94924 0.94879 0.94902 Coding 0.89651 0.97974 0.93628 Genic 0.94967 0.94579 0.94773 BP_Extractor for Sequence contig_26122 - ID 424 Forward for Sequence contig_26122 - ID 424 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10336 0 22 17 Non Coding 12360 58 55 55 UTR 17 138 12 0 Phase 0 6 133 0 0 Coding 30 0 539 10 Phase 1 6 0 136 0 Intron 16 0 0 1815 Phase 2 7 0 0 136 Precision Recall F1 Precision Recall F1 Intergenic 0.99394 0.99624 0.99509 Non Coding 0.99847 0.98659 0.99249 UTR 1.00000 0.82635 0.90492 Phase 0 0.69634 0.95683 0.80606 Coding 0.94066 0.93092 0.93576 Phase 1 0.71204 0.95775 0.81682 Intron 0.98534 0.99126 0.98829 Phase 2 0.71204 0.95105 0.81437 Subgenic 0.97474 0.97676 0.97575 Coding 0.70681 0.95519 0.81244 Genic 0.97611 0.96702 0.97154 Reverse for Sequence contig_26122 - ID 424 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5777 9 1 0 Non Coding 9029 82 90 88 UTR 26 746 16 0 Phase 0 17 1212 1 1 Coding 89 20 3819 78 Phase 1 12 0 1203 0 Intron 3 0 46 2322 Phase 2 12 0 0 1205 Precision Recall F1 Precision Recall F1 Intergenic 0.97998 0.99827 0.98904 Non Coding 0.99548 0.97201 0.98360 UTR 0.96258 0.94670 0.95457 Phase 0 0.93663 0.98457 0.96000 Coding 0.98377 0.95332 0.96831 Phase 1 0.92968 0.99012 0.95895 Intron 0.96750 0.97933 0.97338 Phase 2 0.93122 0.99014 0.95978 Subgenic 0.97755 0.96299 0.97022 Coding 0.93251 0.98826 0.95958 Genic 0.97591 0.96120 0.96850 BP_Extractor for Sequence contig_26249 - ID 425 Forward for Sequence contig_26249 - ID 425 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5548 0 0 0 Non Coding 5548 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_26249 - ID 425 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5548 0 0 0 Non Coding 5548 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_26271 - ID 426 Forward for Sequence contig_26271 - ID 426 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6970 0 0 0 Non Coding 7364 5 3 3 UTR 248 46 7 0 Phase 0 15 307 0 0 Coding 43 12 929 1 Phase 1 18 0 309 0 Intron 0 0 0 94 Phase 2 17 0 0 309 Precision Recall F1 Precision Recall F1 Intergenic 0.95992 1.00000 0.97955 Non Coding 0.99326 0.99851 0.99588 UTR 0.79310 0.15282 0.25627 Phase 0 0.98397 0.95342 0.96845 Coding 0.99252 0.94315 0.96720 Phase 1 0.99038 0.94495 0.96714 Intron 0.98947 1.00000 0.99471 Phase 2 0.99038 0.94785 0.96865 Subgenic 0.99224 0.94810 0.96967 Coding 0.98825 0.94872 0.96808 Genic 0.98163 0.77464 0.86594 Reverse for Sequence contig_26271 - ID 426 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5074 0 0 0 Non Coding 6126 13 14 14 UTR 29 100 5 2 Phase 0 232 500 0 5 Coding 722 0 1532 88 Phase 1 225 4 500 0 Intron 126 0 14 658 Phase 2 216 0 3 498 Precision Recall F1 Precision Recall F1 Intergenic 0.85263 1.00000 0.92045 Non Coding 0.90101 0.99335 0.94493 UTR 1.00000 0.73529 0.84746 Phase 0 0.96712 0.67843 0.79745 Coding 0.98775 0.65414 0.78705 Phase 1 0.96712 0.68587 0.80257 Intron 0.87968 0.82456 0.85123 Phase 2 0.96325 0.69456 0.80713 Subgenic 0.95259 0.69745 0.80530 Coding 0.96583 0.68621 0.80236 Genic 0.95456 0.69902 0.80705 BP_Extractor for Sequence contig_26433 - ID 427 Forward for Sequence contig_26433 - ID 427 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4619 0 0 0 Non Coding 4619 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_26433 - ID 427 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3063 1 39 149 Non Coding 4067 58 55 55 UTR 0 7 2 0 Phase 0 0 126 0 0 Coding 13 0 498 21 Phase 1 0 0 129 0 Intron 25 0 13 788 Phase 2 0 0 0 129 Precision Recall F1 Precision Recall F1 Intergenic 0.98775 0.94188 0.96427 Non Coding 1.00000 0.96033 0.97976 UTR 0.87500 0.77778 0.82353 Phase 0 0.68478 1.00000 0.81290 Coding 0.90217 0.93609 0.91882 Phase 1 0.70109 1.00000 0.82428 Intron 0.82255 0.95400 0.88341 Phase 2 0.70109 1.00000 0.82428 Subgenic 0.85166 0.94698 0.89679 Coding 0.69565 1.00000 0.82051 Genic 0.85178 0.94587 0.89636 BP_Extractor for Sequence contig_26451 - ID 428 Forward for Sequence contig_26451 - ID 428 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9987 0 0 0 Non Coding 10170 0 0 0 UTR 36 0 0 0 Phase 0 104 0 0 0 Coding 427 0 0 0 Phase 1 101 0 0 0 Intron 25 0 0 0 Phase 2 100 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95341 1.00000 0.97615 Non Coding 0.97088 1.00000 0.98523 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_26451 - ID 428 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4380 0 0 209 Non Coding 9294 12 16 14 UTR 16 674 1 14 Phase 0 13 369 0 1 Coding 22 3 1120 9 Phase 1 12 0 365 0 Intron 5 1 22 3999 Phase 2 13 0 0 366 Precision Recall F1 Precision Recall F1 Intergenic 0.99028 0.95446 0.97204 Non Coding 0.99593 0.99550 0.99571 UTR 0.99410 0.95603 0.97469 Phase 0 0.96850 0.96345 0.96597 Coding 0.97988 0.97054 0.97519 Phase 1 0.95801 0.96817 0.96306 Intron 0.94517 0.99305 0.96852 Phase 2 0.96063 0.96570 0.96316 Subgenic 0.95255 0.98803 0.96997 Coding 0.96238 0.96576 0.96407 Genic 0.95720 0.98420 0.97051 BP_Extractor for Sequence contig_26452 - ID 429 Forward for Sequence contig_26452 - ID 429 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16559 0 0 0 Non Coding 17068 12 11 10 UTR 3 312 4 0 Phase 0 14 691 0 0 Coding 0 0 2100 55 Phase 1 14 0 692 0 Intron 0 0 5 181 Phase 2 14 0 0 693 Precision Recall F1 Precision Recall F1 Intergenic 0.99982 1.00000 0.99991 Non Coding 0.99755 0.99807 0.99781 UTR 1.00000 0.97806 0.98891 Phase 0 0.98293 0.98014 0.98153 Coding 0.99573 0.97448 0.98499 Phase 1 0.98435 0.98017 0.98226 Intron 0.76695 0.97312 0.85782 Phase 2 0.98578 0.98020 0.98298 Subgenic 0.97271 0.97437 0.97354 Coding 0.98435 0.98017 0.98226 Genic 0.97591 0.97481 0.97536 Reverse for Sequence contig_26452 - ID 429 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18949 0 0 0 Non Coding 19001 0 0 0 UTR 64 0 0 0 Phase 0 73 0 0 0 Coding 194 0 0 0 Phase 1 92 0 0 0 Intron 12 0 0 0 Phase 2 53 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98595 1.00000 0.99293 Non Coding 0.98866 1.00000 0.99430 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_26499 - ID 430 Forward for Sequence contig_26499 - ID 430 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10504 6 7 176 Non Coding 19760 138 141 128 UTR 16 387 21 17 Phase 0 13 974 2 0 Coding 22 3 3281 80 Phase 1 19 0 971 2 Intron 26 1 33 8570 Phase 2 16 2 0 984 Precision Recall F1 Precision Recall F1 Intergenic 0.99394 0.98232 0.98810 Non Coding 0.99758 0.97982 0.98862 UTR 0.97481 0.87755 0.92363 Phase 0 0.87433 0.98483 0.92630 Coding 0.98175 0.96899 0.97533 Phase 1 0.87163 0.97883 0.92213 Intron 0.96913 0.99305 0.98094 Phase 2 0.88330 0.98204 0.93006 Subgenic 0.97259 0.98627 0.97938 Coding 0.87642 0.98190 0.92617 Genic 0.97266 0.98242 0.97752 Reverse for Sequence contig_26499 - ID 430 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23149 0 0 0 Non Coding 23143 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 1 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99996 1.00000 0.99998 Non Coding 0.99970 1.00000 0.99985 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_26700 - ID 431 Forward for Sequence contig_26700 - ID 431 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9508 0 28 0 Non Coding 11732 69 71 68 UTR 28 151 39 8 Phase 0 95 744 0 0 Coding 632 0 2344 30 Phase 1 107 0 742 0 Intron 66 0 28 1610 Phase 2 99 0 0 745 Precision Recall F1 Precision Recall F1 Intergenic 0.92906 0.99706 0.96186 Non Coding 0.97499 0.98258 0.97877 UTR 1.00000 0.66814 0.80106 Phase 0 0.91513 0.88677 0.90073 Coding 0.96105 0.77977 0.86097 Phase 1 0.91267 0.87397 0.89290 Intron 0.97694 0.94484 0.96062 Phase 2 0.91636 0.88270 0.89922 Subgenic 0.96746 0.83949 0.89894 Coding 0.91472 0.88112 0.89761 Genic 0.96862 0.83165 0.89492 Reverse for Sequence contig_26700 - ID 431 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14450 0 0 0 Non Coding 14454 0 0 0 UTR 7 0 0 0 Phase 0 6 0 0 0 Coding 15 0 0 0 Phase 1 7 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99848 1.00000 0.99924 Non Coding 0.99876 1.00000 0.99938 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_26899 - ID 432 Forward for Sequence contig_26899 - ID 432 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6218 1 0 1 Non Coding 6439 3 7 3 UTR 3 133 2 0 Phase 0 0 175 0 0 Coding 0 0 532 2 Phase 1 1 0 171 0 Intron 0 0 0 82 Phase 2 0 0 0 175 Precision Recall F1 Precision Recall F1 Intergenic 0.99952 0.99968 0.99960 Non Coding 0.99984 0.99799 0.99891 UTR 0.99254 0.96377 0.97794 Phase 0 0.98315 1.00000 0.99150 Coding 0.99625 0.99625 0.99625 Phase 1 0.96067 0.99419 0.97714 Intron 0.96471 1.00000 0.98204 Phase 2 0.98315 1.00000 0.99150 Subgenic 0.99192 0.99675 0.99433 Coding 0.97566 0.99808 0.98674 Genic 0.99203 0.99072 0.99137 Reverse for Sequence contig_26899 - ID 432 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1983 4 0 5 Non Coding 4747 25 24 23 UTR 96 346 3 2 Phase 0 12 701 0 2 Coding 73 2 2172 37 Phase 1 15 3 702 0 Intron 307 18 12 1914 Phase 2 13 0 3 704 Precision Recall F1 Precision Recall F1 Intergenic 0.80643 0.99548 0.89104 Non Coding 0.99164 0.98506 0.98834 UTR 0.93514 0.77405 0.84700 Phase 0 0.96159 0.98042 0.97091 Coding 0.99314 0.95096 0.97159 Phase 1 0.96296 0.97500 0.96894 Intron 0.97753 0.85029 0.90948 Phase 2 0.96571 0.97778 0.97170 Subgenic 0.98577 0.90099 0.94147 Coding 0.96342 0.97773 0.97052 Genic 0.98162 0.88960 0.93335 BP_Extractor for Sequence contig_26948 - ID 433 Forward for Sequence contig_26948 - ID 433 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4906 0 0 0 Non Coding 4912 0 0 0 UTR 8 0 0 0 Phase 0 1 0 0 0 Coding 6 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99715 1.00000 0.99858 Non Coding 0.99837 1.00000 0.99919 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_26948 - ID 433 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 136 1 0 15 Non Coding 2425 34 29 28 UTR 3 264 30 5 Phase 0 11 784 0 0 Coding 1 32 2423 35 Phase 1 15 0 789 0 Intron 14 2 1 1958 Phase 2 15 0 0 790 Precision Recall F1 Precision Recall F1 Intergenic 0.88312 0.89474 0.88889 Non Coding 0.98337 0.96383 0.97350 UTR 0.88294 0.87417 0.87854 Phase 0 0.95844 0.98616 0.97210 Coding 0.98737 0.97270 0.97998 Phase 1 0.96455 0.98134 0.97287 Intron 0.97268 0.99139 0.98195 Phase 2 0.96577 0.98137 0.97351 Subgenic 0.98075 0.98097 0.98086 Coding 0.96292 0.98295 0.97283 Genic 0.97461 0.97420 0.97441 BP_Extractor for Sequence contig_27079 - ID 434 Forward for Sequence contig_27079 - ID 434 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18370 1 0 0 Non Coding 20012 5 5 9 UTR 9 411 0 4 Phase 0 5 400 0 0 Coding 0 1 1210 19 Phase 1 8 0 400 0 Intron 0 0 5 1216 Phase 2 6 0 0 396 Precision Recall F1 Precision Recall F1 Intergenic 0.99951 0.99995 0.99973 Non Coding 0.99905 0.99905 0.99905 UTR 0.99516 0.96934 0.98208 Phase 0 0.98765 0.98765 0.98765 Coding 0.99588 0.98374 0.98978 Phase 1 0.98765 0.98039 0.98401 Intron 0.98144 0.99590 0.98862 Phase 2 0.97778 0.98507 0.98141 Subgenic 0.98859 0.98980 0.98919 Coding 0.98436 0.98436 0.98436 Genic 0.98954 0.98678 0.98816 Reverse for Sequence contig_27079 - ID 434 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17068 6 0 0 Non Coding 20566 23 29 23 UTR 21 254 11 0 Phase 0 34 167 0 1 Coding 225 0 558 10 Phase 1 39 0 160 0 Intron 126 0 1 2966 Phase 2 37 0 1 166 Precision Recall F1 Precision Recall F1 Intergenic 0.97867 0.99965 0.98905 Non Coding 0.99468 0.99637 0.99552 UTR 0.97692 0.88811 0.93040 Phase 0 0.87895 0.82673 0.85204 Coding 0.97895 0.70366 0.81878 Phase 1 0.84211 0.80402 0.82262 Intron 0.99664 0.95894 0.97743 Phase 2 0.87368 0.81373 0.84264 Subgenic 0.99380 0.90685 0.94833 Coding 0.86491 0.81488 0.83915 Genic 0.99264 0.90556 0.94710 BP_Extractor for Sequence contig_27171 - ID 435 Forward for Sequence contig_27171 - ID 435 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12165 0 0 0 Non Coding 12165 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_27171 - ID 435 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6329 5 61 0 Non Coding 11026 82 82 77 UTR 13 144 3 10 Phase 0 5 287 4 0 Coding 9 2 1054 17 Phase 1 9 0 287 4 Intron 0 19 1 4498 Phase 2 6 4 0 292 Precision Recall F1 Precision Recall F1 Intergenic 0.99654 0.98968 0.99310 Non Coding 0.99819 0.97861 0.98830 UTR 0.84706 0.84706 0.84706 Phase 0 0.76944 0.96959 0.85800 Coding 0.94191 0.97412 0.95775 Phase 1 0.76944 0.95667 0.85290 Intron 0.99403 0.99557 0.99480 Phase 2 0.78284 0.96689 0.86519 Subgenic 0.98370 0.99143 0.98755 Coding 0.77391 0.96437 0.85870 Genic 0.97970 0.98718 0.98343 BP_Extractor for Sequence contig_27223 - ID 436 Forward for Sequence contig_27223 - ID 436 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8768 0 0 0 Non Coding 8768 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_27223 - ID 436 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8755 0 0 0 Non Coding 8739 0 0 0 UTR 4 0 0 0 Phase 0 11 0 0 0 Coding 9 0 0 0 Phase 1 6 0 0 0 Intron 0 0 0 0 Phase 2 12 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99852 1.00000 0.99926 Non Coding 0.99669 1.00000 0.99834 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_27315 - ID 437 Forward for Sequence contig_27315 - ID 437 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7310 5 0 0 Non Coding 7584 7 9 5 UTR 14 142 9 0 Phase 0 4 201 0 0 Coding 11 1 614 8 Phase 1 6 0 199 0 Intron 0 0 1 106 Phase 2 3 0 0 203 Precision Recall F1 Precision Recall F1 Intergenic 0.99659 0.99932 0.99795 Non Coding 0.99829 0.99724 0.99776 UTR 0.95946 0.86061 0.90735 Phase 0 0.96635 0.98049 0.97337 Coding 0.98397 0.96845 0.97615 Phase 1 0.95673 0.97073 0.96368 Intron 0.92982 0.99065 0.95928 Phase 2 0.97596 0.98544 0.98068 Subgenic 0.97561 0.97166 0.97363 Coding 0.96635 0.97890 0.97258 Genic 0.97291 0.95143 0.96205 Reverse for Sequence contig_27315 - ID 437 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6154 4 0 26 Non Coding 7365 4 6 5 UTR 6 238 2 6 Phase 0 3 278 0 0 Coding 0 2 844 13 Phase 1 4 0 276 0 Intron 24 0 0 902 Phase 2 3 0 0 277 Precision Recall F1 Precision Recall F1 Intergenic 0.99515 0.99515 0.99515 Non Coding 0.99864 0.99797 0.99831 UTR 0.97541 0.94444 0.95968 Phase 0 0.98582 0.98932 0.98757 Coding 0.99764 0.98254 0.99003 Phase 1 0.97872 0.98571 0.98221 Intron 0.95248 0.97408 0.96316 Phase 2 0.98227 0.98929 0.98577 Subgenic 0.97379 0.97815 0.97596 Coding 0.98227 0.98811 0.98518 Genic 0.97398 0.97398 0.97398 BP_Extractor for Sequence contig_27440 - ID 438 Forward for Sequence contig_27440 - ID 438 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28361 17 104 105 Non Coding 32966 131 131 129 UTR 71 501 7 4 Phase 0 206 934 0 0 Coding 578 41 3033 18 Phase 1 204 0 934 0 Intron 116 15 51 3757 Phase 2 208 0 0 936 Precision Recall F1 Precision Recall F1 Intergenic 0.97373 0.99209 0.98283 Non Coding 0.98160 0.98828 0.98493 UTR 0.87282 0.85935 0.86603 Phase 0 0.87700 0.81930 0.84717 Coding 0.94930 0.82643 0.88361 Phase 1 0.87700 0.82074 0.84793 Intron 0.96730 0.95380 0.96050 Phase 2 0.87887 0.81818 0.84744 Subgenic 0.95918 0.89236 0.92456 Coding 0.87762 0.81940 0.84751 Genic 0.95270 0.89001 0.92029 Reverse for Sequence contig_27440 - ID 438 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31160 2 0 32 Non Coding 34305 52 54 57 UTR 143 185 18 6 Phase 0 70 702 1 0 Coding 52 10 2239 109 Phase 1 74 0 699 0 Intron 24 7 8 2784 Phase 2 65 1 1 698 Precision Recall F1 Precision Recall F1 Intergenic 0.99302 0.99891 0.99596 Non Coding 0.99394 0.99527 0.99461 UTR 0.90686 0.52557 0.66547 Phase 0 0.92980 0.90815 0.91885 Coding 0.98852 0.92905 0.95786 Phase 1 0.92583 0.90427 0.91492 Intron 0.94985 0.98618 0.96767 Phase 2 0.92450 0.91242 0.91842 Subgenic 0.96671 0.95987 0.96328 Coding 0.92671 0.90826 0.91740 Genic 0.96444 0.93250 0.94820 BP_Extractor for Sequence contig_27486 - ID 439 Forward for Sequence contig_27486 - ID 439 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1395 2 3 60 Non Coding 1852 7 9 7 UTR 2 110 19 20 Phase 0 1 465 0 0 Coding 0 1 1394 4 Phase 1 0 0 463 0 Intron 51 0 0 208 Phase 2 0 0 0 465 Precision Recall F1 Precision Recall F1 Intergenic 0.96340 0.95548 0.95942 Non Coding 0.99946 0.98773 0.99356 UTR 0.97345 0.72848 0.83333 Phase 0 0.98517 0.99785 0.99147 Coding 0.98446 0.99643 0.99041 Phase 1 0.98093 1.00000 0.99037 Intron 0.71233 0.80309 0.75499 Phase 2 0.98517 1.00000 0.99253 Subgenic 0.93794 0.96622 0.95187 Coding 0.98376 0.99928 0.99146 Genic 0.94014 0.94638 0.94325 Reverse for Sequence contig_27486 - ID 439 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3264 0 0 0 Non Coding 3264 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 5 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99847 1.00000 0.99923 Non Coding 0.99847 1.00000 0.99923 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_27497 - ID 440 Forward for Sequence contig_27497 - ID 440 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6532 0 0 0 Non Coding 6532 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_27497 - ID 440 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3233 5 75 0 Non Coding 4135 221 209 218 UTR 25 293 39 2 Phase 0 20 555 0 0 Coding 86 6 2209 36 Phase 1 27 0 567 0 Intron 26 0 5 492 Phase 2 22 0 0 558 Precision Recall F1 Precision Recall F1 Intergenic 0.95935 0.97585 0.96753 Non Coding 0.98359 0.86452 0.92022 UTR 0.96382 0.81616 0.88386 Phase 0 0.71521 0.96522 0.82161 Coding 0.94888 0.94523 0.94705 Phase 1 0.73067 0.95455 0.82774 Intron 0.92830 0.94073 0.93447 Phase 2 0.71907 0.96207 0.82301 Subgenic 0.94507 0.94441 0.94474 Coding 0.72165 0.96055 0.82414 Genic 0.94687 0.93010 0.93841 BP_Extractor for Sequence contig_27612 - ID 441 Forward for Sequence contig_27612 - ID 441 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6949 0 0 0 Non Coding 6956 0 0 0 UTR 4 0 0 0 Phase 0 2 0 0 0 Coding 9 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99813 1.00000 0.99907 Non Coding 0.99914 1.00000 0.99957 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_27612 - ID 441 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4057 0 218 0 Non Coding 4481 174 146 166 UTR 33 79 2 12 Phase 0 61 596 0 0 Coding 271 2 2072 38 Phase 1 57 0 624 0 Intron 21 0 18 139 Phase 2 53 0 0 604 Precision Recall F1 Precision Recall F1 Intergenic 0.92583 0.94901 0.93728 Non Coding 0.96324 0.90215 0.93170 UTR 0.97531 0.62698 0.76329 Phase 0 0.77403 0.90715 0.83532 Coding 0.89697 0.86949 0.88302 Phase 1 0.81039 0.91630 0.86010 Intron 0.73545 0.78090 0.75749 Phase 2 0.78442 0.91933 0.84653 Subgenic 0.88475 0.86333 0.87391 Coding 0.78961 0.91429 0.84739 Genic 0.88760 0.85225 0.86957 BP_Extractor for Sequence contig_27648 - ID 442 Forward for Sequence contig_27648 - ID 442 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4090 12 12 1 Non Coding 5995 126 140 139 UTR 11 363 16 8 Phase 0 0 360 0 0 Coding 4 4 1422 13 Phase 1 1 0 346 0 Intron 9 2 8 1480 Phase 2 1 0 0 347 Precision Recall F1 Precision Recall F1 Intergenic 0.99417 0.99392 0.99405 Non Coding 0.99967 0.93672 0.96717 UTR 0.95276 0.91206 0.93196 Phase 0 0.74074 1.00000 0.85106 Coding 0.97531 0.98545 0.98035 Phase 1 0.71193 0.99712 0.83073 Intron 0.98535 0.98732 0.98634 Phase 2 0.71399 0.99713 0.83213 Subgenic 0.98041 0.98640 0.98340 Coding 0.72222 0.99810 0.83804 Genic 0.97725 0.97754 0.97740 Reverse for Sequence contig_27648 - ID 442 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4934 3 0 0 Non Coding 5838 14 7 9 UTR 0 226 0 0 Phase 0 1 523 0 0 Coding 0 0 1587 4 Phase 1 3 0 530 0 Intron 0 0 24 677 Phase 2 2 0 0 528 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99939 0.99970 Non Coding 0.99897 0.99489 0.99693 UTR 0.98690 1.00000 0.99341 Phase 0 0.97393 0.99809 0.98586 Coding 0.98510 0.99749 0.99126 Phase 1 0.98696 0.99437 0.99065 Intron 0.99413 0.96576 0.97974 Phase 2 0.98324 0.99623 0.98969 Subgenic 0.98778 0.98778 0.98778 Coding 0.98138 0.99622 0.98874 Genic 0.98770 0.98888 0.98829 BP_Extractor for Sequence contig_27651 - ID 443 Forward for Sequence contig_27651 - ID 443 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2026 0 0 0 Non Coding 3414 1 0 0 UTR 15 134 1 0 Phase 0 30 330 0 0 Coding 86 26 992 0 Phase 1 30 0 331 0 Intron 364 0 0 854 Phase 2 31 0 0 331 Precision Recall F1 Precision Recall F1 Intergenic 0.81333 1.00000 0.89706 Non Coding 0.97404 0.99971 0.98671 UTR 0.83750 0.89333 0.86452 Phase 0 0.99698 0.91667 0.95514 Coding 0.99899 0.89855 0.94611 Phase 1 1.00000 0.91690 0.95665 Intron 1.00000 0.70115 0.82432 Phase 2 1.00000 0.91436 0.95527 Subgenic 0.99946 0.79500 0.88558 Coding 0.99899 0.91597 0.95568 Genic 0.98655 0.80097 0.88413 Reverse for Sequence contig_27651 - ID 443 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3400 0 0 0 Non Coding 4111 2 1 1 UTR 0 96 1 0 Phase 0 0 127 0 0 Coding 0 0 383 0 Phase 1 0 0 128 0 Intron 0 1 3 614 Phase 2 0 0 0 128 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 0.99903 0.99951 UTR 0.98969 0.98969 0.98969 Phase 0 0.98450 1.00000 0.99219 Coding 0.98966 1.00000 0.99481 Phase 1 0.99225 1.00000 0.99611 Intron 1.00000 0.99353 0.99675 Phase 2 0.99225 1.00000 0.99611 Subgenic 0.99600 0.99600 0.99600 Coding 0.98966 1.00000 0.99481 Genic 0.99545 0.99545 0.99545 BP_Extractor for Sequence contig_27694 - ID 444 Forward for Sequence contig_27694 - ID 444 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4966 0 0 0 Non Coding 4985 0 0 0 UTR 13 0 0 0 Phase 0 9 0 0 0 Coding 27 0 0 0 Phase 1 10 0 0 0 Intron 6 0 0 0 Phase 2 8 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99082 1.00000 0.99539 Non Coding 0.99461 1.00000 0.99730 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_27694 - ID 444 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2952 18 0 0 Non Coding 3419 11 18 17 UTR 7 291 5 3 Phase 0 86 434 0 0 Coding 254 1 1324 20 Phase 1 86 0 427 0 Intron 0 0 6 131 Phase 2 86 0 0 428 Precision Recall F1 Precision Recall F1 Intergenic 0.91877 0.99394 0.95488 Non Coding 0.92983 0.98672 0.95743 UTR 0.93871 0.95098 0.94481 Phase 0 0.97528 0.83462 0.89948 Coding 0.99176 0.82802 0.90252 Phase 1 0.95955 0.83236 0.89144 Intron 0.85065 0.95620 0.90034 Phase 2 0.96180 0.83268 0.89260 Subgenic 0.97717 0.83813 0.90233 Coding 0.96554 0.83323 0.89452 Genic 0.97054 0.85504 0.90914 BP_Extractor for Sequence contig_27748 - ID 445 Forward for Sequence contig_27748 - ID 445 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16494 0 0 0 Non Coding 17097 0 0 0 UTR 154 0 0 0 Phase 0 823 0 0 0 Coding 2828 0 0 0 Phase 1 834 0 0 0 Intron 96 0 0 0 Phase 2 818 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84273 1.00000 0.91466 Non Coding 0.87354 1.00000 0.93250 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_27748 - ID 445 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15260 0 165 42 Non Coding 16194 107 121 115 UTR 48 285 22 3 Phase 0 133 883 0 0 Coding 398 2 2780 49 Phase 1 118 0 869 0 Intron 47 27 3 441 Phase 2 157 0 0 875 Precision Recall F1 Precision Recall F1 Intergenic 0.96870 0.98662 0.97758 Non Coding 0.97542 0.97926 0.97734 UTR 0.90764 0.79609 0.84821 Phase 0 0.89192 0.86909 0.88036 Coding 0.93603 0.86095 0.89692 Phase 1 0.87778 0.88045 0.87911 Intron 0.82430 0.85135 0.83761 Phase 2 0.88384 0.84787 0.86548 Subgenic 0.91897 0.85962 0.88831 Coding 0.88451 0.86557 0.87494 Genic 0.91804 0.85408 0.88491 BP_Extractor for Sequence contig_27895 - ID 446 Forward for Sequence contig_27895 - ID 446 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6603 0 0 0 Non Coding 6603 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_27895 - ID 446 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5876 9 0 0 Non Coding 6096 3 1 1 UTR 2 127 0 0 Phase 0 4 162 0 0 Coding 3 12 492 0 Phase 1 4 0 164 0 Intron 12 0 3 67 Phase 2 4 0 0 164 Precision Recall F1 Precision Recall F1 Intergenic 0.99712 0.99847 0.99779 Non Coding 0.99804 0.99918 0.99861 UTR 0.85811 0.98450 0.91697 Phase 0 0.98182 0.97590 0.97885 Coding 0.99394 0.97041 0.98204 Phase 1 0.99394 0.97619 0.98498 Intron 1.00000 0.81707 0.89933 Phase 2 0.99394 0.97619 0.98498 Subgenic 0.99466 0.94907 0.97133 Coding 0.98990 0.97610 0.98295 Genic 0.96620 0.95543 0.96078 BP_Extractor for Sequence contig_28001 - ID 447 Forward for Sequence contig_28001 - ID 447 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12047 1 108 0 Non Coding 12160 122 101 115 UTR 20 103 2 0 Phase 0 88 515 0 0 Coding 122 0 1797 21 Phase 1 86 0 536 0 Intron 0 0 4 111 Phase 2 91 0 0 522 Precision Recall F1 Precision Recall F1 Intergenic 0.98835 0.99103 0.98969 Non Coding 0.97867 0.97296 0.97581 UTR 0.99038 0.82400 0.89956 Phase 0 0.80848 0.85406 0.83065 Coding 0.94035 0.92629 0.93326 Phase 1 0.84144 0.86174 0.85147 Intron 0.84091 0.96522 0.89879 Phase 2 0.81947 0.85155 0.83520 Subgenic 0.93392 0.92847 0.93119 Coding 0.82313 0.85582 0.83916 Genic 0.93666 0.92248 0.92951 Reverse for Sequence contig_28001 - ID 447 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11026 13 80 97 Non Coding 11816 115 97 100 UTR 6 444 5 0 Phase 0 11 714 0 0 Coding 15 4 2390 38 Phase 1 12 0 732 0 Intron 11 0 12 195 Phase 2 10 0 0 729 Precision Recall F1 Precision Recall F1 Intergenic 0.99711 0.98306 0.99003 Non Coding 0.99721 0.97427 0.98561 UTR 0.96312 0.97582 0.96943 Phase 0 0.86128 0.98483 0.91892 Coding 0.96100 0.97671 0.96879 Phase 1 0.88299 0.98387 0.93071 Intron 0.59091 0.89450 0.71168 Phase 2 0.87937 0.98647 0.92985 Subgenic 0.91764 0.96998 0.94309 Coding 0.87455 0.98505 0.92652 Genic 0.92404 0.97083 0.94686 BP_Extractor for Sequence contig_28035 - ID 448 Forward for Sequence contig_28035 - ID 448 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10890 6 0 0 Non Coding 11862 28 25 27 UTR 3 507 16 9 Phase 0 2 428 3 0 Coding 3 4 1349 35 Phase 1 2 0 430 3 Intron 3 0 10 408 Phase 2 2 3 0 428 Precision Recall F1 Precision Recall F1 Intergenic 0.99917 0.99945 0.99931 Non Coding 0.99949 0.99330 0.99639 UTR 0.98066 0.94766 0.96388 Phase 0 0.93246 0.98845 0.95964 Coding 0.98109 0.96981 0.97542 Phase 1 0.93886 0.98851 0.96305 Intron 0.90265 0.96912 0.93471 Phase 2 0.93450 0.98845 0.96072 Subgenic 0.96169 0.96965 0.96565 Coding 0.93527 0.98847 0.96114 Genic 0.96587 0.96464 0.96525 Reverse for Sequence contig_28035 - ID 448 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13205 0 0 0 Non Coding 13234 0 0 0 UTR 15 0 0 0 Phase 0 4 0 0 0 Coding 23 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99713 1.00000 0.99856 Non Coding 0.99932 1.00000 0.99966 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_28221 - ID 449 Forward for Sequence contig_28221 - ID 449 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17850 35 253 172 Non Coding 19350 392 401 393 UTR 12 430 0 2 Phase 0 7 481 0 21 Coding 23 3 2408 16 Phase 1 5 20 475 0 Intron 36 5 18 789 Phase 2 11 0 17 479 Precision Recall F1 Precision Recall F1 Intergenic 0.99604 0.97488 0.98534 Non Coding 0.99881 0.94225 0.96971 UTR 0.90909 0.96847 0.93784 Phase 0 0.53863 0.94499 0.68616 Coding 0.89884 0.98286 0.93897 Phase 1 0.53191 0.95000 0.68198 Intron 0.80592 0.93042 0.86371 Phase 2 0.53639 0.94477 0.68429 Subgenic 0.87397 0.96938 0.91921 Coding 0.53565 0.94657 0.68415 Genic 0.87800 0.96927 0.92138 Reverse for Sequence contig_28221 - ID 449 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22020 0 0 0 Non Coding 22038 0 0 0 UTR 15 0 0 0 Phase 0 5 0 0 0 Coding 17 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99855 1.00000 0.99927 Non Coding 0.99937 1.00000 0.99968 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_28238 - ID 450 Forward for Sequence contig_28238 - ID 450 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10182 20 2 22 Non Coding 16331 89 94 106 UTR 9 498 18 23 Phase 0 50 1007 0 0 Coding 36 6 3225 114 Phase 1 39 0 1002 0 Intron 6 0 43 5542 Phase 2 38 0 0 990 Precision Recall F1 Precision Recall F1 Intergenic 0.99502 0.99570 0.99536 Non Coding 0.99228 0.98261 0.98742 UTR 0.95038 0.90876 0.92910 Phase 0 0.91880 0.95270 0.93544 Coding 0.98084 0.95386 0.96716 Phase 1 0.91423 0.96254 0.93776 Intron 0.97211 0.99124 0.98158 Phase 2 0.90328 0.96304 0.93220 Subgenic 0.97530 0.97715 0.97623 Coding 0.91210 0.95937 0.93514 Genic 0.97393 0.97321 0.97357 Reverse for Sequence contig_28238 - ID 450 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19488 0 0 0 Non Coding 19620 0 0 0 UTR 39 0 0 0 Phase 0 45 0 0 0 Coding 164 0 0 0 Phase 1 37 0 0 0 Intron 55 0 0 0 Phase 2 44 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98693 1.00000 0.99342 Non Coding 0.99362 1.00000 0.99680 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_28244 - ID 451 Forward for Sequence contig_28244 - ID 451 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6003 3 0 5 Non Coding 6720 103 123 124 UTR 47 336 11 17 Phase 0 13 684 0 0 Coding 58 0 2338 36 Phase 1 13 0 664 0 Intron 58 20 12 182 Phase 2 19 0 0 663 Precision Recall F1 Precision Recall F1 Intergenic 0.97356 0.99867 0.98596 Non Coding 0.99335 0.95050 0.97145 UTR 0.93593 0.81752 0.87273 Phase 0 0.86912 0.98135 0.92183 Coding 0.99026 0.96135 0.97559 Phase 1 0.84371 0.98080 0.90710 Intron 0.75833 0.66912 0.71094 Phase 2 0.84244 0.97214 0.90265 Subgenic 0.96886 0.93195 0.95005 Coding 0.85176 0.97811 0.91057 Genic 0.96486 0.91685 0.94025 Reverse for Sequence contig_28244 - ID 451 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9126 0 0 0 Non Coding 9126 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_28245 - ID 452 Forward for Sequence contig_28245 - ID 452 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8711 0 0 0 Non Coding 8711 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_28245 - ID 452 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7910 0 0 0 Non Coding 8101 0 0 0 UTR 70 0 0 0 Phase 0 203 0 0 0 Coding 704 0 0 0 Phase 1 206 0 0 0 Intron 27 0 0 0 Phase 2 201 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90805 1.00000 0.95181 Non Coding 0.92997 1.00000 0.96372 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_28323 - ID 453 Forward for Sequence contig_28323 - ID 453 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9189 0 0 0 Non Coding 9189 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_28323 - ID 453 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4905 5 40 1 Non Coding 7486 120 117 125 UTR 12 116 10 19 Phase 0 5 440 0 1 Coding 153 11 1613 13 Phase 1 10 0 442 0 Intron 16 27 17 2231 Phase 2 8 0 1 434 Precision Recall F1 Precision Recall F1 Intergenic 0.96441 0.99071 0.97738 Non Coding 0.99694 0.95387 0.97493 UTR 0.72956 0.73885 0.73418 Phase 0 0.78571 0.98655 0.87475 Coding 0.96012 0.90112 0.92968 Phase 1 0.78929 0.97788 0.87352 Intron 0.98542 0.97381 0.97958 Phase 2 0.77500 0.97968 0.86540 Subgenic 0.97465 0.94193 0.95801 Coding 0.78333 0.98136 0.87123 Genic 0.96515 0.93440 0.94953 BP_Extractor for Sequence contig_28600 - ID 454 Forward for Sequence contig_28600 - ID 454 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7780 0 0 0 Non Coding 7780 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_28600 - ID 454 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6400 5 0 0 Non Coding 6797 22 26 31 UTR 9 249 1 0 Phase 0 7 296 0 1 Coding 21 2 960 0 Phase 1 5 3 294 0 Intron 0 0 2 131 Phase 2 8 0 1 289 Precision Recall F1 Precision Recall F1 Intergenic 0.99533 0.99922 0.99727 Non Coding 0.99707 0.98851 0.99277 UTR 0.97266 0.96139 0.96699 Phase 0 0.92212 0.97368 0.94720 Coding 0.99688 0.97660 0.98664 Phase 1 0.91589 0.97351 0.94382 Intron 1.00000 0.98496 0.99242 Phase 2 0.90031 0.96980 0.93376 Subgenic 0.99726 0.97760 0.98733 Coding 0.91277 0.97235 0.94162 Genic 0.99259 0.97455 0.98349 BP_Extractor for Sequence contig_28623 - ID 455 Forward for Sequence contig_28623 - ID 455 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 678 2 0 0 Non Coding 4189 19 20 24 UTR 0 240 1 23 Phase 0 2 764 0 0 Coding 0 1 2321 21 Phase 1 5 0 763 0 Intron 1 4 27 3231 Phase 2 5 0 0 759 Precision Recall F1 Precision Recall F1 Intergenic 0.99853 0.99706 0.99779 Non Coding 0.99714 0.98518 0.99113 UTR 0.97166 0.90909 0.93933 Phase 0 0.97573 0.99739 0.98644 Coding 0.98808 0.99061 0.98934 Phase 1 0.97446 0.99349 0.98388 Intron 0.98656 0.99019 0.98838 Phase 2 0.96935 0.99346 0.98125 Subgenic 0.98720 0.99037 0.98878 Coding 0.97318 0.99478 0.98386 Genic 0.98654 0.98671 0.98663 Reverse for Sequence contig_28623 - ID 455 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6550 0 0 0 Non Coding 6550 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_28654 - ID 456 Forward for Sequence contig_28654 - ID 456 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5401 0 0 0 Non Coding 5738 49 44 44 UTR 17 38 1 0 Phase 0 36 182 2 0 Coding 283 2 698 2 Phase 1 43 0 187 4 Intron 14 0 0 98 Phase 2 38 2 0 185 Precision Recall F1 Precision Recall F1 Intergenic 0.94506 1.00000 0.97175 Non Coding 0.98002 0.97668 0.97835 UTR 0.95000 0.67857 0.79167 Phase 0 0.78112 0.82727 0.80353 Coding 0.99857 0.70863 0.82898 Phase 1 0.80258 0.79915 0.80086 Intron 0.98000 0.87500 0.92453 Phase 2 0.79399 0.82222 0.80786 Subgenic 0.99625 0.72562 0.83966 Coding 0.79256 0.81591 0.80406 Genic 0.99404 0.72333 0.83735 Reverse for Sequence contig_28654 - ID 456 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6528 0 0 0 Non Coding 6535 0 0 0 UTR 2 0 0 0 Phase 0 5 0 0 0 Coding 19 0 0 0 Phase 1 8 0 0 0 Intron 5 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99603 1.00000 0.99801 Non Coding 0.99710 1.00000 0.99855 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_28771 - ID 457 Forward for Sequence contig_28771 - ID 457 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16731 9 0 1 Non Coding 20657 6 6 5 UTR 188 977 5 42 Phase 0 403 1220 0 0 Coding 1395 8 3670 32 Phase 1 390 0 1220 0 Intron 73 4 3 2377 Phase 2 387 0 0 1221 Precision Recall F1 Precision Recall F1 Intergenic 0.90994 0.99940 0.95257 Non Coding 0.94596 0.99918 0.97184 UTR 0.97896 0.80611 0.88416 Phase 0 0.99511 0.75169 0.85644 Coding 0.99782 0.71890 0.83571 Phase 1 0.99511 0.75776 0.86037 Intron 0.96941 0.96744 0.96843 Phase 2 0.99592 0.75933 0.86168 Subgenic 0.98646 0.79966 0.88329 Coding 0.99538 0.75625 0.85949 Genic 0.98541 0.80055 0.88341 Reverse for Sequence contig_28771 - ID 457 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20044 3 34 10 Non Coding 23348 58 51 58 UTR 403 36 11 16 Phase 0 258 403 0 0 Coding 1564 7 1314 37 Phase 1 264 0 410 0 Intron 287 0 24 1725 Phase 2 262 0 0 403 Precision Recall F1 Precision Recall F1 Intergenic 0.89891 0.99766 0.94572 Non Coding 0.96751 0.99290 0.98004 UTR 0.78261 0.07725 0.14062 Phase 0 0.87419 0.60968 0.71836 Coding 0.95011 0.44969 0.61045 Phase 1 0.88937 0.60831 0.72247 Intron 0.96477 0.84725 0.90220 Phase 2 0.87419 0.60602 0.71581 Subgenic 0.95837 0.61295 0.74769 Coding 0.87925 0.60800 0.71889 Genic 0.95586 0.56692 0.71172 BP_Extractor for Sequence contig_28987 - ID 458 Forward for Sequence contig_28987 - ID 458 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4109 0 0 0 Non Coding 4109 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_28987 - ID 458 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1536 0 0 0 Non Coding 2955 19 17 19 UTR 2 87 0 5 Phase 0 4 358 0 0 Coding 0 0 1103 20 Phase 1 12 0 360 0 Intron 6 1 28 1321 Phase 2 7 0 0 358 Precision Recall F1 Precision Recall F1 Intergenic 0.99482 1.00000 0.99740 Non Coding 0.99228 0.98173 0.98697 UTR 0.98864 0.92553 0.95604 Phase 0 0.94960 0.98895 0.96888 Coding 0.97524 0.98219 0.97870 Phase 1 0.95491 0.96774 0.96128 Intron 0.98143 0.97419 0.97779 Phase 2 0.94960 0.98082 0.96496 Subgenic 0.97860 0.97781 0.97821 Coding 0.95137 0.97907 0.96502 Genic 0.97895 0.97590 0.97742 BP_Extractor for Sequence contig_28996 - ID 459 Forward for Sequence contig_28996 - ID 459 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15175 0 0 0 Non Coding 15175 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_28996 - ID 459 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11159 8 0 1 Non Coding 13076 11 15 14 UTR 86 551 0 4 Phase 0 16 672 0 0 Coding 75 0 2044 27 Phase 1 18 0 668 0 Intron 209 2 5 1004 Phase 2 16 0 0 669 Precision Recall F1 Precision Recall F1 Intergenic 0.96791 0.99919 0.98330 Non Coding 0.99619 0.99695 0.99657 UTR 0.98217 0.85959 0.91681 Phase 0 0.98389 0.97674 0.98031 Coding 0.99756 0.95247 0.97449 Phase 1 0.97804 0.97376 0.97589 Intron 0.96911 0.82295 0.89007 Phase 2 0.97950 0.97664 0.97807 Subgenic 0.98801 0.90553 0.94497 Coding 0.98048 0.97572 0.97809 Genic 0.98711 0.89818 0.94055 BP_Extractor for Sequence contig_29073 - ID 460 Forward for Sequence contig_29073 - ID 460 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9744 0 0 0 Non Coding 9747 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 7 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99928 1.00000 0.99964 Non Coding 0.99959 1.00000 0.99979 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_29073 - ID 460 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9730 0 0 0 Non Coding 9735 0 0 0 UTR 6 0 0 0 Phase 0 7 0 0 0 Coding 15 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99785 1.00000 0.99892 Non Coding 0.99836 1.00000 0.99918 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_29140 - ID 461 Forward for Sequence contig_29140 - ID 461 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11186 0 13 0 Non Coding 11457 24 27 26 UTR 15 83 2 0 Phase 0 7 333 0 0 Coding 61 15 1044 1 Phase 1 5 0 330 0 Intron 0 0 12 115 Phase 2 7 0 0 331 Precision Recall F1 Precision Recall F1 Intergenic 0.99325 0.99884 0.99604 Non Coding 0.99834 0.99332 0.99583 UTR 0.84694 0.83000 0.83838 Phase 0 0.93277 0.97941 0.95552 Coding 0.97479 0.93131 0.95255 Phase 1 0.92437 0.98507 0.95376 Intron 0.99138 0.90551 0.94650 Phase 2 0.92717 0.97929 0.95252 Subgenic 0.97641 0.92869 0.95195 Coding 0.92810 0.98124 0.95393 Genic 0.96654 0.92136 0.94341 Reverse for Sequence contig_29140 - ID 461 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11729 0 0 0 Non Coding 12117 0 0 0 UTR 22 0 0 0 Phase 0 139 0 0 0 Coding 404 0 0 0 Phase 1 150 0 0 0 Intron 392 0 0 0 Phase 2 141 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93481 1.00000 0.96630 Non Coding 0.96573 1.00000 0.98257 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_29164 - ID 462 Forward for Sequence contig_29164 - ID 462 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10629 12 24 41 Non Coding 11250 34 40 47 UTR 57 232 1 0 Phase 0 11 293 0 0 Coding 102 0 950 14 Phase 1 16 0 287 0 Intron 4 1 6 192 Phase 2 7 0 0 280 Precision Recall F1 Precision Recall F1 Intergenic 0.98490 0.99281 0.98884 Non Coding 0.99699 0.98936 0.99316 UTR 0.94694 0.80000 0.86729 Phase 0 0.89602 0.96382 0.92868 Coding 0.96840 0.89118 0.92819 Phase 1 0.87768 0.94719 0.91111 Intron 0.77733 0.94581 0.85333 Phase 2 0.85627 0.97561 0.91205 Subgenic 0.92997 0.89992 0.91470 Coding 0.87666 0.96197 0.91733 Genic 0.93279 0.88133 0.90633 Reverse for Sequence contig_29164 - ID 462 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8523 1 6 95 Non Coding 9717 59 70 66 UTR 54 133 9 14 Phase 0 41 748 1 0 Coding 302 2 2365 33 Phase 1 41 0 737 1 Intron 40 9 44 635 Phase 2 42 1 0 741 Precision Recall F1 Precision Recall F1 Intergenic 0.95560 0.98817 0.97161 Non Coding 0.98740 0.98033 0.98385 UTR 0.91724 0.63333 0.74930 Phase 0 0.92574 0.94684 0.93617 Coding 0.97566 0.87528 0.92275 Phase 1 0.91213 0.94608 0.92880 Intron 0.81725 0.87225 0.84385 Phase 2 0.91708 0.94515 0.93090 Subgenic 0.93721 0.87464 0.90484 Coding 0.91832 0.94603 0.93197 Genic 0.93634 0.86071 0.89694 BP_Extractor for Sequence contig_29362 - ID 463 Forward for Sequence contig_29362 - ID 463 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24112 1 93 72 Non Coding 29524 93 88 92 UTR 45 411 42 24 Phase 0 41 1873 0 0 Coding 244 1 5762 11 Phase 1 29 0 1878 0 Intron 15 12 1 4682 Phase 2 36 0 0 1874 Precision Recall F1 Precision Recall F1 Intergenic 0.98755 0.99316 0.99035 Non Coding 0.99642 0.99084 0.99362 UTR 0.96706 0.78736 0.86800 Phase 0 0.95270 0.97858 0.96546 Coding 0.97694 0.95746 0.96710 Phase 1 0.95524 0.98479 0.96979 Intron 0.97766 0.99406 0.98579 Phase 2 0.95320 0.98115 0.96698 Subgenic 0.97726 0.97353 0.97539 Coding 0.95371 0.98150 0.96741 Genic 0.97687 0.96489 0.97084 Reverse for Sequence contig_29362 - ID 463 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 29200 2 9 0 Non Coding 32583 54 52 52 UTR 78 533 28 17 Phase 0 145 783 0 0 Coding 430 16 2468 29 Phase 1 148 0 785 0 Intron 168 15 6 2529 Phase 2 141 0 0 785 Precision Recall F1 Precision Recall F1 Intergenic 0.97737 0.99962 0.98837 Non Coding 0.98686 0.99517 0.99100 UTR 0.94170 0.81250 0.87234 Phase 0 0.93548 0.84375 0.88725 Coding 0.98288 0.83860 0.90502 Phase 1 0.93787 0.84137 0.88701 Intron 0.98214 0.93046 0.95560 Phase 2 0.93787 0.84773 0.89053 Subgenic 0.98250 0.88271 0.92993 Coding 0.93708 0.84428 0.88826 Genic 0.97841 0.87542 0.92405 BP_Extractor for Sequence contig_29368 - ID 464 Forward for Sequence contig_29368 - ID 464 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12161 0 0 166 Non Coding 13913 23 19 18 UTR 22 245 5 1 Phase 0 6 395 0 23 Coding 19 0 1302 0 Phase 1 4 18 395 0 Intron 12 0 1 1304 Phase 2 7 0 22 395 Precision Recall F1 Precision Recall F1 Intergenic 0.99566 0.98653 0.99108 Non Coding 0.99878 0.99571 0.99724 UTR 1.00000 0.89744 0.94595 Phase 0 0.90596 0.93160 0.91860 Coding 0.99541 0.98562 0.99049 Phase 1 0.90596 0.94724 0.92614 Intron 0.88647 0.99013 0.93544 Phase 2 0.90596 0.93160 0.91860 Subgenic 0.93775 0.98787 0.96216 Coding 0.90596 0.93676 0.92110 Genic 0.94279 0.97939 0.96074 Reverse for Sequence contig_29368 - ID 464 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14103 0 0 0 Non Coding 14362 0 0 0 UTR 134 0 0 0 Phase 0 296 0 0 0 Coding 1001 0 0 0 Phase 1 295 0 0 0 Intron 0 0 0 0 Phase 2 285 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92552 1.00000 0.96132 Non Coding 0.94251 1.00000 0.97041 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_29372 - ID 465 Forward for Sequence contig_29372 - ID 465 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11447 0 0 0 Non Coding 11517 0 0 0 UTR 49 0 0 0 Phase 0 193 0 0 0 Coding 594 0 0 0 Phase 1 190 0 0 0 Intron 3 0 0 0 Phase 2 193 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94658 1.00000 0.97256 Non Coding 0.95237 1.00000 0.97560 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_29372 - ID 465 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12088 0 0 0 Non Coding 12090 0 0 0 UTR 2 0 0 0 Phase 0 1 0 0 0 Coding 3 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99959 1.00000 0.99979 Non Coding 0.99975 1.00000 0.99988 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_29531 - ID 466 Forward for Sequence contig_29531 - ID 466 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4033 0 0 0 Non Coding 4054 0 0 0 UTR 7 0 0 0 Phase 0 5 0 0 0 Coding 28 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99140 1.00000 0.99568 Non Coding 0.99656 1.00000 0.99828 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_29531 - ID 466 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4068 0 0 0 Non Coding 4068 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_29542 - ID 467 Forward for Sequence contig_29542 - ID 467 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7254 0 0 0 Non Coding 8792 22 20 22 UTR 2 111 5 9 Phase 0 2 180 0 3 Coding 4 1 605 11 Phase 1 4 3 182 0 Intron 0 0 5 1408 Phase 2 2 0 3 180 Precision Recall F1 Precision Recall F1 Intergenic 0.99917 1.00000 0.99959 Non Coding 0.99909 0.99277 0.99592 UTR 0.99107 0.87402 0.92887 Phase 0 0.87805 0.97297 0.92308 Coding 0.98374 0.97424 0.97896 Phase 1 0.88780 0.96296 0.92386 Intron 0.98599 0.99646 0.99120 Phase 2 0.87805 0.97297 0.92308 Subgenic 0.98532 0.98968 0.98749 Coding 0.88130 0.96959 0.92334 Genic 0.98561 0.98288 0.98424 Reverse for Sequence contig_29542 - ID 467 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8366 0 0 0 Non Coding 8883 0 0 0 UTR 83 0 0 0 Phase 0 175 0 0 0 Coding 640 0 0 0 Phase 1 178 0 0 0 Intron 326 0 0 0 Phase 2 179 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88858 1.00000 0.94100 Non Coding 0.94349 1.00000 0.97093 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_29587 - ID 468 Forward for Sequence contig_29587 - ID 468 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3901 0 0 0 Non Coding 3901 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_29587 - ID 468 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3897 0 0 0 Non Coding 3897 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 4 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99897 1.00000 0.99949 Non Coding 0.99897 1.00000 0.99949 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_29732 - ID 469 Forward for Sequence contig_29732 - ID 469 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3746 0 0 0 Non Coding 3746 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_29732 - ID 469 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1007 0 0 0 Non Coding 1385 5 5 4 UTR 9 321 8 0 Phase 0 9 773 0 0 Coding 18 1 2325 18 Phase 1 10 0 773 0 Intron 0 0 1 38 Phase 2 8 0 0 774 Precision Recall F1 Precision Recall F1 Intergenic 0.97389 1.00000 0.98677 Non Coding 0.98088 0.98999 0.98541 UTR 0.99689 0.94970 0.97273 Phase 0 0.99357 0.98849 0.99103 Coding 0.99614 0.98434 0.99020 Phase 1 0.99357 0.98723 0.99039 Intron 0.67857 0.97436 0.80000 Phase 2 0.99486 0.98977 0.99231 Subgenic 0.98870 0.98417 0.98643 Coding 0.99400 0.98850 0.99124 Genic 0.98968 0.97992 0.98477 BP_Extractor for Sequence contig_29753 - ID 470 Forward for Sequence contig_29753 - ID 470 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5507 0 0 0 Non Coding 5507 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_29753 - ID 470 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3417 1 0 53 Non Coding 4116 6 2 2 UTR 6 59 2 1 Phase 0 1 457 0 0 Coding 3 0 1383 1 Phase 1 0 0 461 0 Intron 1 2 4 574 Phase 2 1 0 0 461 Precision Recall F1 Precision Recall F1 Intergenic 0.99708 0.98444 0.99072 Non Coding 0.99951 0.99758 0.99854 UTR 0.95161 0.86765 0.90769 Phase 0 0.98704 0.99782 0.99240 Coding 0.99568 0.99712 0.99640 Phase 1 0.99568 1.00000 0.99784 Intron 0.91256 0.98795 0.94876 Phase 2 0.99568 0.99784 0.99676 Subgenic 0.96977 0.99441 0.98194 Coding 0.99280 0.99855 0.99567 Genic 0.96923 0.99018 0.97959 BP_Extractor for Sequence contig_29933 - ID 471 Forward for Sequence contig_29933 - ID 471 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21621 0 0 0 Non Coding 21621 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_29933 - ID 471 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13501 3 0 0 Non Coding 20556 6 6 5 UTR 13 79 1 0 Phase 0 10 337 3 0 Coding 20 12 1028 3 Phase 1 9 0 336 3 Intron 21 17 7 6916 Phase 2 10 3 0 337 Precision Recall F1 Precision Recall F1 Intergenic 0.99602 0.99978 0.99789 Non Coding 0.99859 0.99917 0.99888 UTR 0.71171 0.84946 0.77451 Phase 0 0.97399 0.96286 0.96839 Coding 0.99228 0.96707 0.97951 Phase 1 0.97391 0.96552 0.96970 Intron 0.99957 0.99354 0.99654 Phase 2 0.97681 0.96286 0.96978 Subgenic 0.99862 0.99003 0.99431 Coding 0.97490 0.96374 0.96929 Genic 0.99467 0.98842 0.99153 BP_Extractor for Sequence contig_30074 - ID 472 Forward for Sequence contig_30074 - ID 472 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20526 1 6 9 Non Coding 24153 11 6 10 UTR 347 65 12 7 Phase 0 1839 285 0 0 Coding 6694 0 869 37 Phase 1 1854 0 290 0 Intron 1885 0 1 95 Phase 2 1820 0 0 286 Precision Recall F1 Precision Recall F1 Intergenic 0.69693 0.99922 0.82114 Non Coding 0.81416 0.99888 0.89711 UTR 0.98485 0.15081 0.26157 Phase 0 0.96284 0.13418 0.23554 Coding 0.97860 0.11434 0.20476 Phase 1 0.97973 0.13526 0.23770 Intron 0.64189 0.04796 0.08924 Phase 2 0.96622 0.13580 0.23813 Subgenic 0.93050 0.10062 0.18160 Coding 0.96959 0.13508 0.23712 Genic 0.93376 0.10278 0.18517 Reverse for Sequence contig_30074 - ID 472 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24276 7 0 8 Non Coding 28138 28 31 32 UTR 161 953 14 10 Phase 0 39 737 0 0 Coding 201 5 2268 44 Phase 1 40 0 734 0 Intron 265 22 13 2307 Phase 2 42 0 0 733 Precision Recall F1 Precision Recall F1 Intergenic 0.97482 0.99938 0.98695 Non Coding 0.99572 0.99678 0.99625 UTR 0.96555 0.83743 0.89694 Phase 0 0.96340 0.94974 0.95652 Coding 0.98824 0.90071 0.94245 Phase 1 0.95948 0.94832 0.95387 Intron 0.97383 0.88493 0.92725 Phase 2 0.95817 0.94581 0.95195 Subgenic 0.98092 0.89268 0.93472 Coding 0.96035 0.94796 0.95411 Genic 0.97823 0.88264 0.92798 BP_Extractor for Sequence contig_30110 - ID 473 Forward for Sequence contig_30110 - ID 473 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13822 0 0 0 Non Coding 13838 0 0 0 UTR 10 0 0 0 Phase 0 40 0 0 0 Coding 110 0 0 0 Phase 1 36 0 0 0 Intron 5 0 0 0 Phase 2 33 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99104 1.00000 0.99550 Non Coding 0.99218 1.00000 0.99608 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_30110 - ID 473 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8186 10 0 1 Non Coding 11871 69 81 78 UTR 12 390 11 16 Phase 0 18 601 1 0 Coding 1 3 1978 80 Phase 1 21 0 590 0 Intron 11 5 27 3216 Phase 2 21 2 0 594 Precision Recall F1 Precision Recall F1 Intergenic 0.99708 0.99866 0.99787 Non Coding 0.99497 0.98116 0.98801 UTR 0.95588 0.90909 0.93190 Phase 0 0.89435 0.96935 0.93034 Coding 0.98115 0.95926 0.97008 Phase 1 0.87798 0.96563 0.91972 Intron 0.97072 0.98681 0.97870 Phase 2 0.88393 0.96272 0.92164 Subgenic 0.97467 0.97613 0.97540 Coding 0.88542 0.96591 0.92391 Genic 0.97333 0.97113 0.97223 BP_Extractor for Sequence contig_30160 - ID 474 Forward for Sequence contig_30160 - ID 474 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11691 0 0 0 Non Coding 12888 0 0 0 UTR 173 0 0 0 Phase 0 270 0 0 0 Coding 1675 0 0 0 Phase 1 265 0 0 0 Intron 164 0 0 0 Phase 2 280 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85317 1.00000 0.92077 Non Coding 0.94052 1.00000 0.96935 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_30160 - ID 474 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11475 3 0 0 Non Coding 12857 2 1 1 UTR 1 76 0 0 Phase 0 0 280 0 0 Coding 0 0 843 0 Phase 1 0 0 281 0 Intron 0 1 3 1301 Phase 2 0 0 0 281 Precision Recall F1 Precision Recall F1 Intergenic 0.99991 0.99974 0.99983 Non Coding 1.00000 0.99969 0.99984 UTR 0.95000 0.98701 0.96815 Phase 0 0.99291 1.00000 0.99644 Coding 0.99645 1.00000 0.99822 Phase 1 0.99645 1.00000 0.99822 Intron 1.00000 0.99693 0.99847 Phase 2 0.99645 1.00000 0.99822 Subgenic 0.99860 0.99814 0.99837 Coding 0.99527 1.00000 0.99763 Genic 0.99686 0.99775 0.99730 BP_Extractor for Sequence contig_30238 - ID 475 Forward for Sequence contig_30238 - ID 475 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4538 0 0 0 Non Coding 4538 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_30238 - ID 475 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4538 0 0 0 Non Coding 4538 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_30296 - ID 476 Forward for Sequence contig_30296 - ID 476 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4438 0 0 0 Non Coding 4438 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_30296 - ID 476 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3404 1 0 0 Non Coding 3677 6 2 2 UTR 15 42 1 0 Phase 0 19 230 0 0 Coding 87 8 706 6 Phase 1 16 0 234 0 Intron 66 0 1 101 Phase 2 18 0 0 234 Precision Recall F1 Precision Recall F1 Intergenic 0.95297 0.99971 0.97578 Non Coding 0.98579 0.99729 0.99151 UTR 0.82353 0.72414 0.77064 Phase 0 0.97458 0.92369 0.94845 Coding 0.99718 0.87485 0.93201 Phase 1 0.99153 0.93600 0.96296 Intron 0.94393 0.60119 0.73455 Phase 2 0.99153 0.92857 0.95902 Subgenic 0.99018 0.82769 0.90168 Coding 0.98588 0.92943 0.95682 Genic 0.98037 0.82188 0.89415 BP_Extractor for Sequence contig_30342 - ID 477 Forward for Sequence contig_30342 - ID 477 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33262 3 0 0 Non Coding 34798 138 155 153 UTR 177 44 4 3 Phase 0 719 574 1 0 Coding 2335 1 2117 34 Phase 1 694 0 558 2 Intron 416 0 21 604 Phase 2 668 2 0 559 Precision Recall F1 Precision Recall F1 Intergenic 0.91909 0.99991 0.95780 Non Coding 0.94357 0.98735 0.96496 UTR 0.91667 0.19298 0.31884 Phase 0 0.80392 0.44359 0.57171 Coding 0.98833 0.47181 0.63871 Phase 1 0.78151 0.44498 0.56707 Intron 0.94228 0.58021 0.71819 Phase 2 0.78291 0.45484 0.57540 Subgenic 0.97772 0.49222 0.65479 Coding 0.78945 0.44771 0.57138 Genic 0.97669 0.48037 0.64400 Reverse for Sequence contig_30342 - ID 477 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34907 0 28 59 Non Coding 36403 103 103 105 UTR 31 241 9 12 Phase 0 24 745 0 0 Coding 31 0 2467 62 Phase 1 23 0 745 0 Intron 6 19 40 1109 Phase 2 27 0 0 743 Precision Recall F1 Precision Recall F1 Intergenic 0.99806 0.99751 0.99778 Non Coding 0.99797 0.99153 0.99474 UTR 0.92692 0.82253 0.87161 Phase 0 0.87854 0.96879 0.92146 Coding 0.96973 0.96367 0.96669 Phase 1 0.87854 0.97005 0.92203 Intron 0.89291 0.94463 0.91805 Phase 2 0.87618 0.96494 0.91842 Subgenic 0.94453 0.95769 0.95106 Coding 0.87775 0.96792 0.92063 Genic 0.94340 0.94785 0.94562 BP_Extractor for Sequence contig_30435 - ID 478 Forward for Sequence contig_30435 - ID 478 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13952 3 355 75 Non Coding 17276 868 719 867 UTR 22 236 16 23 Phase 0 53 1641 2 0 Coding 198 12 7099 134 Phase 1 53 0 1791 3 Intron 138 1 66 2641 Phase 2 53 3 0 1642 Precision Recall F1 Precision Recall F1 Intergenic 0.97498 0.96990 0.97243 Non Coding 0.99088 0.87562 0.92969 UTR 0.93651 0.79461 0.85974 Phase 0 0.65326 0.96757 0.77994 Coding 0.94201 0.95378 0.94786 Phase 1 0.71298 0.96968 0.82175 Intron 0.91925 0.92797 0.92359 Phase 2 0.65366 0.96702 0.78005 Subgenic 0.93573 0.94664 0.94115 Coding 0.67330 0.96814 0.79424 Genic 0.93575 0.94238 0.93905 Reverse for Sequence contig_30435 - ID 478 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22143 6 0 0 Non Coding 23353 14 15 15 UTR 33 443 2 47 Phase 0 12 515 0 0 Coding 14 2 1574 28 Phase 1 9 0 513 0 Intron 1 9 9 660 Phase 2 12 0 0 513 Precision Recall F1 Precision Recall F1 Intergenic 0.99784 0.99973 0.99878 Non Coding 0.99859 0.99812 0.99835 UTR 0.96304 0.84381 0.89949 Phase 0 0.97353 0.97723 0.97538 Coding 0.99306 0.97281 0.98283 Phase 1 0.97159 0.98276 0.97714 Intron 0.89796 0.97202 0.93352 Phase 2 0.97159 0.97714 0.97436 Subgenic 0.96293 0.97257 0.96773 Coding 0.97224 0.97903 0.97563 Genic 0.96295 0.94862 0.95573 BP_Extractor for Sequence contig_30457 - ID 479 Forward for Sequence contig_30457 - ID 479 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4733 7 37 15 Non Coding 7043 39 39 42 UTR 2 90 12 7 Phase 0 24 325 0 0 Coding 0 0 1039 83 Phase 1 23 0 325 0 Intron 0 0 4 2178 Phase 2 25 0 0 322 Precision Recall F1 Precision Recall F1 Intergenic 0.99958 0.98769 0.99360 Non Coding 0.98988 0.98325 0.98655 UTR 0.92784 0.81081 0.86538 Phase 0 0.89286 0.93123 0.91164 Coding 0.95147 0.92602 0.93857 Phase 1 0.89286 0.93391 0.91292 Intron 0.95401 0.99817 0.97559 Phase 2 0.88462 0.92795 0.90577 Subgenic 0.95319 0.97367 0.96332 Coding 0.89011 0.93103 0.91011 Genic 0.95248 0.96837 0.96036 Reverse for Sequence contig_30457 - ID 479 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4348 0 0 1 Non Coding 7493 2 1 2 UTR 1 258 1 0 Phase 0 1 235 0 0 Coding 0 2 709 0 Phase 1 1 0 236 0 Intron 43 1 1 2842 Phase 2 1 0 0 235 Precision Recall F1 Precision Recall F1 Intergenic 0.98998 0.99977 0.99485 Non Coding 0.99960 0.99933 0.99947 UTR 0.98851 0.99231 0.99040 Phase 0 0.99156 0.99576 0.99366 Coding 0.99719 0.99719 0.99719 Phase 1 0.99578 0.99578 0.99578 Intron 0.99965 0.98441 0.99197 Phase 2 0.99156 0.99576 0.99366 Subgenic 0.99916 0.98694 0.99301 Coding 0.99297 0.99577 0.99437 Genic 0.99843 0.98730 0.99283 BP_Extractor for Sequence contig_30490 - ID 480 Forward for Sequence contig_30490 - ID 480 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19155 0 0 0 Non Coding 18696 0 0 0 UTR 46 0 0 0 Phase 0 252 0 0 0 Coding 189 0 0 0 Phase 1 230 0 0 0 Intron 8 0 0 0 Phase 2 220 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98747 1.00000 0.99370 Non Coding 0.96381 1.00000 0.98157 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_30490 - ID 480 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13272 5 47 234 Non Coding 16502 236 244 271 UTR 74 420 14 26 Phase 0 65 671 0 1 Coding 265 15 2654 24 Phase 1 52 0 662 0 Intron 261 22 6 2059 Phase 2 58 0 1 635 Precision Recall F1 Precision Recall F1 Intergenic 0.95675 0.97891 0.96770 Non Coding 0.98951 0.95647 0.97271 UTR 0.90909 0.78652 0.84337 Phase 0 0.73980 0.91045 0.81630 Coding 0.97538 0.89723 0.93467 Phase 1 0.72988 0.92717 0.81678 Intron 0.87879 0.87692 0.87785 Phase 2 0.70011 0.91499 0.79325 Subgenic 0.93069 0.88824 0.90897 Coding 0.72326 0.91748 0.80888 Genic 0.92888 0.87894 0.90322 BP_Extractor for Sequence contig_30567 - ID 481 Forward for Sequence contig_30567 - ID 481 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2972 0 0 0 Non Coding 2972 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_30567 - ID 481 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2971 0 0 0 Non Coding 2970 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99966 1.00000 0.99983 Non Coding 0.99933 1.00000 0.99966 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_30668 - ID 482 Forward for Sequence contig_30668 - ID 482 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23640 5 0 0 Non Coding 24841 32 33 34 UTR 104 568 57 0 Phase 0 363 899 0 0 Coding 1178 0 2726 29 Phase 1 378 0 898 0 Intron 19 0 10 376 Phase 2 337 0 0 897 Precision Recall F1 Precision Recall F1 Intergenic 0.94784 0.99979 0.97312 Non Coding 0.95841 0.99603 0.97686 UTR 0.99127 0.77915 0.87250 Phase 0 0.96563 0.71236 0.81988 Coding 0.97601 0.69311 0.81059 Phase 1 0.96455 0.70376 0.81377 Intron 0.92840 0.92840 0.92840 Phase 2 0.96348 0.72690 0.82864 Subgenic 0.96998 0.71508 0.82325 Coding 0.96455 0.71421 0.82072 Genic 0.97322 0.72429 0.83050 Reverse for Sequence contig_30668 - ID 482 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21475 10 265 52 Non Coding 23756 314 309 315 UTR 61 1000 11 10 Phase 0 43 1297 0 0 Coding 187 9 4503 17 Phase 1 37 0 1302 0 Intron 47 1 54 1010 Phase 2 43 0 0 1296 Precision Recall F1 Precision Recall F1 Intergenic 0.98645 0.98500 0.98572 Non Coding 0.99485 0.96202 0.97816 UTR 0.98039 0.92421 0.95147 Phase 0 0.80509 0.96791 0.87902 Coding 0.93172 0.95483 0.94314 Phase 1 0.80819 0.97237 0.88271 Intron 0.92746 0.90827 0.91776 Phase 2 0.80447 0.96789 0.87864 Subgenic 0.93094 0.94595 0.93838 Coding 0.80592 0.96939 0.88013 Genic 0.93820 0.94255 0.94037 BP_Extractor for Sequence contig_30669 - ID 483 Forward for Sequence contig_30669 - ID 483 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4391 0 0 0 Non Coding 4330 0 0 0 UTR 37 0 0 0 Phase 0 253 0 0 0 Coding 680 0 0 0 Phase 1 260 0 0 0 Intron 6 0 0 0 Phase 2 271 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85862 1.00000 0.92393 Non Coding 0.84670 1.00000 0.91698 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_30669 - ID 483 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5114 0 0 0 Non Coding 5114 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_30754 - ID 484 Forward for Sequence contig_30754 - ID 484 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16180 0 0 0 Non Coding 16286 0 0 0 UTR 53 0 0 0 Phase 0 135 0 0 0 Coding 438 0 0 0 Phase 1 140 0 0 0 Intron 31 0 0 0 Phase 2 141 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96875 1.00000 0.98413 Non Coding 0.97509 1.00000 0.98739 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_30754 - ID 484 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10458 3 0 0 Non Coding 13727 57 54 58 UTR 147 513 34 6 Phase 0 22 920 0 0 Coding 55 65 2861 27 Phase 1 12 0 922 0 Intron 1 28 34 2470 Phase 2 12 0 0 918 Precision Recall F1 Precision Recall F1 Intergenic 0.98096 0.99971 0.99025 Non Coding 0.99666 0.98784 0.99223 UTR 0.84236 0.73286 0.78380 Phase 0 0.94166 0.97665 0.95883 Coding 0.97678 0.95113 0.96379 Phase 1 0.94467 0.98715 0.96545 Intron 0.98682 0.97513 0.98094 Phase 2 0.94057 0.98710 0.96327 Subgenic 0.98141 0.96210 0.97166 Coding 0.94230 0.98361 0.96251 Genic 0.96739 0.93639 0.95164 BP_Extractor for Sequence contig_30796 - ID 485 Forward for Sequence contig_30796 - ID 485 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9895 0 0 0 Non Coding 9896 0 0 0 UTR 1 0 0 0 Phase 0 2 0 0 0 Coding 4 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99949 1.00000 0.99975 Non Coding 0.99960 1.00000 0.99980 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_30796 - ID 485 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9887 0 0 0 Non Coding 9874 0 0 0 UTR 0 0 0 0 Phase 0 10 0 0 0 Coding 13 0 0 0 Phase 1 6 0 0 0 Intron 0 0 0 0 Phase 2 10 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99869 1.00000 0.99934 Non Coding 0.99737 1.00000 0.99869 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_30872 - ID 486 Forward for Sequence contig_30872 - ID 486 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4966 14 24 16 Non Coding 8654 144 131 157 UTR 9 317 12 0 Phase 0 8 724 0 0 Coding 17 3 2559 33 Phase 1 7 0 737 0 Intron 1 1 9 3301 Phase 2 9 0 0 711 Precision Recall F1 Precision Recall F1 Intergenic 0.99459 0.98924 0.99191 Non Coding 0.99723 0.95245 0.97433 UTR 0.94627 0.93787 0.94205 Phase 0 0.83410 0.98907 0.90500 Coding 0.98272 0.97971 0.98121 Phase 1 0.84908 0.99059 0.91439 Intron 0.98537 0.99668 0.99099 Phase 2 0.81912 0.98750 0.89547 Subgenic 0.98421 0.98920 0.98670 Coding 0.83410 0.98907 0.90500 Genic 0.98219 0.98643 0.98430 Reverse for Sequence contig_30872 - ID 486 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11249 0 0 0 Non Coding 11261 0 0 0 UTR 10 0 0 0 Phase 0 5 0 0 0 Coding 23 0 0 0 Phase 1 9 0 0 0 Intron 0 0 0 0 Phase 2 7 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99707 1.00000 0.99854 Non Coding 0.99814 1.00000 0.99907 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_31055 - ID 487 Forward for Sequence contig_31055 - ID 487 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8350 0 1 0 Non Coding 12216 38 36 37 UTR 1 69 20 24 Phase 0 5 384 0 0 Coding 0 0 1190 21 Phase 1 5 0 386 0 Intron 4 1 55 3761 Phase 2 5 0 0 385 Precision Recall F1 Precision Recall F1 Intergenic 0.99940 0.99988 0.99964 Non Coding 0.99877 0.99100 0.99487 UTR 0.98571 0.60526 0.75000 Phase 0 0.90995 0.98715 0.94698 Coding 0.93997 0.98266 0.96084 Phase 1 0.91469 0.98721 0.94957 Intron 0.98818 0.98430 0.98623 Phase 2 0.91232 0.98718 0.94828 Subgenic 0.97614 0.98390 0.98001 Coding 0.91232 0.98718 0.94828 Genic 0.97627 0.97551 0.97589 Reverse for Sequence contig_31055 - ID 487 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11518 0 0 0 Non Coding 12637 21 22 21 UTR 0 100 9 5 Phase 0 9 257 0 0 Coding 49 7 804 4 Phase 1 5 0 256 0 Intron 16 0 21 964 Phase 2 12 0 0 257 Precision Recall F1 Precision Recall F1 Intergenic 0.99439 1.00000 0.99719 Non Coding 0.99795 0.99496 0.99645 UTR 0.93458 0.87719 0.90498 Phase 0 0.92446 0.96617 0.94485 Coding 0.96403 0.93056 0.94700 Phase 1 0.92086 0.98084 0.94991 Intron 0.99075 0.96304 0.97670 Phase 2 0.92446 0.95539 0.93967 Subgenic 0.97842 0.94799 0.96296 Coding 0.92326 0.96734 0.94479 Genic 0.97597 0.94391 0.95967 BP_Extractor for Sequence contig_31111 - ID 488 Forward for Sequence contig_31111 - ID 488 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10758 3 0 12 Non Coding 10932 0 0 0 UTR 2 61 0 12 Phase 0 1 308 0 0 Coding 0 3 924 0 Phase 1 2 0 308 0 Intron 5 1 0 79 Phase 2 1 0 0 308 Precision Recall F1 Precision Recall F1 Intergenic 0.99935 0.99861 0.99898 Non Coding 0.99963 1.00000 0.99982 UTR 0.89706 0.81333 0.85315 Phase 0 1.00000 0.99676 0.99838 Coding 1.00000 0.99676 0.99838 Phase 1 1.00000 0.99355 0.99676 Intron 0.76699 0.92941 0.84043 Phase 2 1.00000 0.99676 0.99838 Subgenic 0.97663 0.99111 0.98382 Coding 1.00000 0.99569 0.99784 Genic 0.97169 0.97884 0.97525 Reverse for Sequence contig_31111 - ID 488 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11854 0 0 0 Non Coding 11857 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 6 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99949 1.00000 0.99975 Non Coding 0.99975 1.00000 0.99987 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_31148 - ID 489 Forward for Sequence contig_31148 - ID 489 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6446 0 0 0 Non Coding 6442 0 0 0 UTR 6 0 0 0 Phase 0 7 0 0 0 Coding 13 0 0 0 Phase 1 9 0 0 0 Intron 0 0 0 0 Phase 2 7 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99706 1.00000 0.99853 Non Coding 0.99644 1.00000 0.99822 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_31148 - ID 489 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6465 0 0 0 Non Coding 6465 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_31149 - ID 490 Forward for Sequence contig_31149 - ID 490 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10036 0 0 0 Non Coding 10036 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_31149 - ID 490 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 435 2 0 6 Non Coding 8904 34 40 41 UTR 0 39 14 2 Phase 0 5 340 0 0 Coding 1 25 1090 13 Phase 1 1 0 334 0 Intron 37 1 18 8353 Phase 2 4 0 0 333 Precision Recall F1 Precision Recall F1 Intergenic 0.91966 0.98194 0.94978 Non Coding 0.99888 0.98725 0.99303 UTR 0.58209 0.70909 0.63934 Phase 0 0.90909 0.98551 0.94576 Coding 0.97148 0.96546 0.96846 Phase 1 0.89305 0.99701 0.94217 Intron 0.99749 0.99334 0.99541 Phase 2 0.89037 0.98813 0.93671 Subgenic 0.99442 0.99004 0.99222 Coding 0.89750 0.99017 0.94156 Genic 0.99153 0.98843 0.98998 BP_Extractor for Sequence contig_31413 - ID 491 Forward for Sequence contig_31413 - ID 491 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 27702 3 2 0 Non Coding 32396 85 73 86 UTR 349 337 31 18 Phase 0 443 989 0 0 Coding 3675 1 3178 37 Phase 1 440 0 1001 0 Intron 415 0 11 1179 Phase 2 437 0 0 988 Precision Recall F1 Precision Recall F1 Intergenic 0.86189 0.99982 0.92575 Non Coding 0.96085 0.99252 0.97643 UTR 0.98827 0.45850 0.62639 Phase 0 0.92086 0.69064 0.78931 Coding 0.98634 0.46118 0.62850 Phase 1 0.93203 0.69466 0.79602 Intron 0.95543 0.73458 0.83057 Phase 2 0.91993 0.69333 0.79072 Subgenic 0.97778 0.51283 0.67279 Coding 0.92427 0.69288 0.79202 Genic 0.97853 0.50850 0.66923 Reverse for Sequence contig_31413 - ID 491 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 30737 10 48 1 Non Coding 32631 116 127 123 UTR 173 283 3 10 Phase 0 558 749 2 0 Coding 1790 14 2521 69 Phase 1 559 0 740 4 Intron 4 0 35 1240 Phase 2 583 4 0 742 Precision Recall F1 Precision Recall F1 Intergenic 0.93985 0.99808 0.96809 Non Coding 0.95048 0.98891 0.96931 UTR 0.92182 0.60341 0.72938 Phase 0 0.86191 0.57219 0.68779 Coding 0.96701 0.57374 0.72018 Phase 1 0.85155 0.56792 0.68140 Intron 0.93939 0.96951 0.95421 Phase 2 0.85386 0.55831 0.67516 Subgenic 0.95773 0.66296 0.78354 Coding 0.85577 0.56610 0.68143 Genic 0.95513 0.65842 0.77949 BP_Extractor for Sequence contig_31424 - ID 492 Forward for Sequence contig_31424 - ID 492 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12124 0 0 0 Non Coding 12118 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 4 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99967 1.00000 0.99984 Non Coding 0.99918 1.00000 0.99959 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_31424 - ID 492 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2280 0 0 0 Non Coding 8482 44 51 51 UTR 9 312 19 33 Phase 0 8 1161 0 0 Coding 5 1 3553 37 Phase 1 10 0 1154 0 Intron 113 1 43 5722 Phase 2 13 0 0 1154 Precision Recall F1 Precision Recall F1 Intergenic 0.94724 1.00000 0.97290 Non Coding 0.99636 0.98308 0.98967 UTR 0.99363 0.83646 0.90830 Phase 0 0.96349 0.99316 0.97810 Coding 0.98285 0.98804 0.98544 Phase 1 0.95768 0.99141 0.97425 Intron 0.98791 0.97329 0.98055 Phase 2 0.95768 0.98886 0.97302 Subgenic 0.98597 0.97889 0.98242 Coding 0.95961 0.99114 0.97512 Genic 0.98622 0.97350 0.97982 BP_Extractor for Sequence contig_31504 - ID 493 Forward for Sequence contig_31504 - ID 493 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11746 0 0 0 Non Coding 11691 0 0 0 UTR 13 0 0 0 Phase 0 32 0 0 0 Coding 47 0 0 0 Phase 1 51 0 0 0 Intron 5 0 0 0 Phase 2 37 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99450 1.00000 0.99724 Non Coding 0.98984 1.00000 0.99489 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_31504 - ID 493 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11100 0 0 0 Non Coding 11194 0 0 0 UTR 26 0 0 0 Phase 0 205 0 0 0 Coding 685 0 0 0 Phase 1 205 0 0 0 Intron 0 0 0 0 Phase 2 207 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93980 1.00000 0.96897 Non Coding 0.94776 1.00000 0.97318 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_31652 - ID 494 Forward for Sequence contig_31652 - ID 494 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1141 0 0 450 Non Coding 7653 0 3 1 UTR 1 98 0 4 Phase 0 1 79 0 0 Coding 0 0 235 12 Phase 1 2 0 76 0 Intron 0 0 2 5951 Phase 2 1 0 0 78 Precision Recall F1 Precision Recall F1 Intergenic 0.99912 0.71716 0.83498 Non Coding 0.99948 0.99948 0.99948 UTR 1.00000 0.95146 0.97512 Phase 0 1.00000 0.98750 0.99371 Coding 0.99156 0.95142 0.97107 Phase 1 0.96203 0.97436 0.96815 Intron 0.92738 0.99966 0.96217 Phase 2 0.98734 0.98734 0.98734 Subgenic 0.92967 0.99774 0.96250 Coding 0.98312 0.98312 0.98312 Genic 0.93069 0.99699 0.96270 Reverse for Sequence contig_31652 - ID 494 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7873 0 0 0 Non Coding 7879 0 0 0 UTR 5 0 0 0 Phase 0 5 0 0 0 Coding 16 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99734 1.00000 0.99867 Non Coding 0.99810 1.00000 0.99905 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_31794 - ID 495 Forward for Sequence contig_31794 - ID 495 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16565 0 0 0 Non Coding 16565 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_31794 - ID 495 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14066 0 0 0 Non Coding 16133 4 2 2 UTR 20 368 0 0 Phase 0 0 140 0 0 Coding 0 0 431 1 Phase 1 0 0 142 0 Intron 0 0 1 1678 Phase 2 0 0 0 142 Precision Recall F1 Precision Recall F1 Intergenic 0.99858 1.00000 0.99929 Non Coding 1.00000 0.99950 0.99975 UTR 1.00000 0.94845 0.97354 Phase 0 0.97222 1.00000 0.98592 Coding 0.99769 0.99769 0.99769 Phase 1 0.98611 1.00000 0.99301 Intron 0.99940 0.99940 0.99940 Phase 2 0.98611 1.00000 0.99301 Subgenic 0.99905 0.99905 0.99905 Coding 0.98148 1.00000 0.99065 Genic 0.99919 0.99120 0.99518 BP_Extractor for Sequence contig_31961 - ID 496 Forward for Sequence contig_31961 - ID 496 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12305 0 0 0 Non Coding 12303 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 4 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99968 1.00000 0.99984 Non Coding 0.99951 1.00000 0.99976 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_31961 - ID 496 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12309 0 0 0 Non Coding 12309 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_32103 - ID 497 Forward for Sequence contig_32103 - ID 497 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2672 0 0 0 Non Coding 2672 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_32103 - ID 497 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2671 0 0 0 Non Coding 2672 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99963 1.00000 0.99981 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_32203 - ID 498 Forward for Sequence contig_32203 - ID 498 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3985 0 0 0 Non Coding 3985 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_32203 - ID 498 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3985 0 0 0 Non Coding 3985 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_32230 - ID 499 Forward for Sequence contig_32230 - ID 499 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2929 0 0 0 Non Coding 2928 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99966 1.00000 0.99983 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN Reverse for Sequence contig_32230 - ID 499 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2895 0 0 0 Non Coding 2916 0 0 0 UTR 4 0 0 0 Phase 0 3 0 0 0 Coding 30 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98839 1.00000 0.99416 Non Coding 0.99556 1.00000 0.99778 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_32281 - ID 500 Forward for Sequence contig_32281 - ID 500 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8952 0 0 0 Non Coding 9815 0 0 0 UTR 128 0 0 0 Phase 0 126 0 0 0 Coding 961 0 0 0 Phase 1 165 0 0 0 Intron 178 0 0 0 Phase 2 113 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.87602 1.00000 0.93391 Non Coding 0.96047 1.00000 0.97983 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_32281 - ID 500 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10219 0 0 0 Non Coding 10219 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_32389 - ID 501 Forward for Sequence contig_32389 - ID 501 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9186 0 0 0 Non Coding 9186 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_32389 - ID 501 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9186 0 0 0 Non Coding 9186 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_32482 - ID 502 Forward for Sequence contig_32482 - ID 502 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5166 0 0 0 Non Coding 5166 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_32482 - ID 502 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2339 0 64 26 Non Coding 3256 167 171 177 UTR 0 12 6 5 Phase 0 32 437 0 0 Coding 97 4 1713 28 Phase 1 34 0 433 0 Intron 6 0 29 837 Phase 2 32 0 0 427 Precision Recall F1 Precision Recall F1 Intergenic 0.95782 0.96295 0.96038 Non Coding 0.97078 0.86343 0.91396 UTR 0.75000 0.52174 0.61538 Phase 0 0.72351 0.93177 0.81454 Coding 0.94536 0.92997 0.93760 Phase 1 0.71689 0.92719 0.80859 Intron 0.93415 0.95986 0.94683 Phase 2 0.70695 0.93028 0.80339 Subgenic 0.94165 0.93957 0.94061 Coding 0.71578 0.92975 0.80886 Genic 0.94053 0.93606 0.93829 BP_Extractor for Sequence contig_32722 - ID 503 Forward for Sequence contig_32722 - ID 503 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6074 0 0 0 Non Coding 6493 0 0 0 UTR 0 417 0 0 Phase 0 16 106 0 0 Coding 10 4 318 36 Phase 1 16 0 106 0 Intron 0 0 0 0 Phase 2 16 0 0 106 Precision Recall F1 Precision Recall F1 Intergenic 0.99836 1.00000 0.99918 Non Coding 0.99266 1.00000 0.99632 UTR 0.99050 1.00000 0.99523 Phase 0 1.00000 0.86885 0.92982 Coding 1.00000 0.86413 0.92711 Phase 1 1.00000 0.86885 0.92982 Intron 0.00000 NaN 0.00000 Phase 2 1.00000 0.86885 0.92982 Subgenic 0.89831 0.86413 0.88089 Coding 1.00000 0.86885 0.92982 Genic 0.94839 0.93631 0.94231 Reverse for Sequence contig_32722 - ID 503 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1546 13 0 0 Non Coding 4651 4 3 3 UTR 18 476 5 9 Phase 0 3 729 0 0 Coding 0 4 2193 8 Phase 1 3 0 730 0 Intron 6 0 1 2580 Phase 2 3 0 0 730 Precision Recall F1 Precision Recall F1 Intergenic 0.98471 0.99166 0.98818 Non Coding 0.99807 0.99785 0.99796 UTR 0.96552 0.93701 0.95105 Phase 0 0.99454 0.99590 0.99522 Coding 0.99727 0.99456 0.99591 Phase 1 0.99591 0.99591 0.99591 Intron 0.99345 0.99729 0.99537 Phase 2 0.99591 0.99591 0.99591 Subgenic 0.99520 0.99604 0.99562 Coding 0.99545 0.99591 0.99568 Genic 0.99244 0.99038 0.99141 BP_Extractor for Sequence contig_32735 - ID 504 Forward for Sequence contig_32735 - ID 504 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18623 0 0 0 Non Coding 20370 0 0 0 UTR 120 0 0 0 Phase 0 572 0 0 0 Coding 2972 0 0 0 Phase 1 577 0 0 0 Intron 373 0 0 0 Phase 2 569 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84313 1.00000 0.91489 Non Coding 0.92222 1.00000 0.95954 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_32735 - ID 504 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22075 0 0 0 Non Coding 22079 0 0 0 UTR 4 0 0 0 Phase 0 3 0 0 0 Coding 9 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99941 1.00000 0.99971 Non Coding 0.99959 1.00000 0.99980 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_32736 - ID 505 Forward for Sequence contig_32736 - ID 505 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4341 1 4 0 Non Coding 5177 21 19 25 UTR 10 211 21 0 Phase 0 2 423 2 0 Coding 1 7 1313 0 Phase 1 2 0 425 1 Intron 7 22 0 583 Phase 2 2 2 0 420 Precision Recall F1 Precision Recall F1 Intergenic 0.99587 0.99885 0.99736 Non Coding 0.99884 0.98760 0.99319 UTR 0.87552 0.87190 0.87371 Phase 0 0.94843 0.99063 0.96907 Coding 0.98132 0.99394 0.98759 Phase 1 0.95291 0.99299 0.97254 Intron 1.00000 0.95261 0.97573 Phase 2 0.94170 0.99057 0.96552 Subgenic 0.98699 0.98086 0.98391 Coding 0.94768 0.99140 0.96905 Genic 0.97456 0.96874 0.97164 Reverse for Sequence contig_32736 - ID 505 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5500 0 0 0 Non Coding 5734 0 0 0 UTR 85 0 0 0 Phase 0 261 0 0 0 Coding 930 0 0 0 Phase 1 264 0 0 0 Intron 6 0 0 0 Phase 2 262 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84343 1.00000 0.91507 Non Coding 0.87931 1.00000 0.93578 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_32749 - ID 506 Forward for Sequence contig_32749 - ID 506 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2437 0 0 0 Non Coding 2459 0 0 0 UTR 9 0 0 0 Phase 0 6 0 0 0 Coding 25 0 0 0 Phase 1 5 0 0 0 Intron 4 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98465 1.00000 0.99226 Non Coding 0.99354 1.00000 0.99676 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_32749 - ID 506 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2475 0 0 0 Non Coding 2475 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_32955 - ID 507 Forward for Sequence contig_32955 - ID 507 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5178 0 0 0 Non Coding 5270 0 0 0 UTR 84 0 0 0 Phase 0 183 0 0 0 Coding 552 0 0 0 Phase 1 180 0 0 0 Intron 0 0 0 0 Phase 2 181 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89061 1.00000 0.94214 Non Coding 0.90643 1.00000 0.95092 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_32955 - ID 507 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5814 0 0 0 Non Coding 5814 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_33098 - ID 508 Forward for Sequence contig_33098 - ID 508 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8414 0 0 0 Non Coding 8414 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_33098 - ID 508 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6646 7 0 0 Non Coding 7609 0 1 1 UTR 8 904 0 0 Phase 0 3 266 0 0 Coding 15 3 798 0 Phase 1 2 0 265 0 Intron 15 18 0 0 Phase 2 2 0 0 265 Precision Recall F1 Precision Recall F1 Intergenic 0.99431 0.99895 0.99663 Non Coding 0.99908 0.99974 0.99941 UTR 0.96996 0.99123 0.98048 Phase 0 1.00000 0.98885 0.99439 Coding 1.00000 0.97794 0.98885 Phase 1 0.99624 0.99251 0.99437 Intron NaN 0.00000 0.00000 Phase 2 0.99624 0.99251 0.99437 Subgenic 1.00000 0.93993 0.96903 Coding 0.99749 0.99128 0.99438 Genic 0.98382 0.96650 0.97508 BP_Extractor for Sequence contig_33136 - ID 509 Forward for Sequence contig_33136 - ID 509 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24312 0 0 0 Non Coding 24714 0 0 0 UTR 27 0 0 0 Phase 0 25 0 0 0 Coding 425 0 0 0 Phase 1 33 0 0 0 Intron 35 0 0 0 Phase 2 27 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98036 1.00000 0.99008 Non Coding 0.99657 1.00000 0.99828 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_33136 - ID 509 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24771 0 0 0 Non Coding 24784 0 0 0 UTR 7 0 0 0 Phase 0 5 0 0 0 Coding 17 0 0 0 Phase 1 5 0 0 0 Intron 4 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99887 1.00000 0.99944 Non Coding 0.99940 1.00000 0.99970 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_33226 - ID 510 Forward for Sequence contig_33226 - ID 510 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15855 0 0 0 Non Coding 16364 0 0 0 UTR 66 0 0 0 Phase 0 363 0 0 0 Coding 1439 0 0 0 Phase 1 372 0 0 0 Intron 116 0 0 0 Phase 2 377 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90724 1.00000 0.95137 Non Coding 0.93637 1.00000 0.96714 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_33226 - ID 510 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16822 0 0 0 Non Coding 16884 0 0 0 UTR 49 0 0 0 Phase 0 200 0 0 0 Coding 605 0 0 0 Phase 1 195 0 0 0 Intron 0 0 0 0 Phase 2 197 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96258 1.00000 0.98093 Non Coding 0.96612 1.00000 0.98277 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_33274 - ID 511 Forward for Sequence contig_33274 - ID 511 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4305 0 0 0 Non Coding 4305 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_33274 - ID 511 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4050 0 0 0 Non Coding 4177 0 0 0 UTR 12 0 0 0 Phase 0 43 0 0 0 Coding 196 0 0 0 Phase 1 43 0 0 0 Intron 47 0 0 0 Phase 2 42 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94077 1.00000 0.96948 Non Coding 0.97027 1.00000 0.98491 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_33311 - ID 512 Forward for Sequence contig_33311 - ID 512 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9818 10 0 0 Non Coding 16553 16 16 13 UTR 6 58 15 20 Phase 0 15 620 0 0 Coding 18 1 1875 45 Phase 1 15 0 620 0 Intron 9 4 18 6607 Phase 2 13 0 0 623 Precision Recall F1 Precision Recall F1 Intergenic 0.99665 0.99898 0.99781 Non Coding 0.99741 0.99729 0.99735 UTR 0.79452 0.58586 0.67442 Phase 0 0.97484 0.97638 0.97561 Coding 0.98270 0.96699 0.97479 Phase 1 0.97484 0.97638 0.97561 Intron 0.99026 0.99533 0.99279 Phase 2 0.97956 0.97956 0.97956 Subgenic 0.98858 0.98892 0.98875 Coding 0.97642 0.97744 0.97693 Genic 0.98694 0.98432 0.98563 Reverse for Sequence contig_33311 - ID 512 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16281 1 69 0 Non Coding 16690 91 86 91 UTR 26 73 5 0 Phase 0 32 482 0 0 Coding 140 4 1644 12 Phase 1 31 0 487 0 Intron 73 0 1 175 Phase 2 32 0 0 482 Precision Recall F1 Precision Recall F1 Intergenic 0.98553 0.99572 0.99060 Non Coding 0.99434 0.98420 0.98924 UTR 0.93590 0.70192 0.80220 Phase 0 0.84119 0.93774 0.88684 Coding 0.95637 0.91333 0.93436 Phase 1 0.84991 0.94015 0.89276 Intron 0.93583 0.70281 0.80275 Phase 2 0.84119 0.93774 0.88684 Subgenic 0.95435 0.88775 0.91985 Coding 0.84410 0.93855 0.88882 Genic 0.95363 0.87877 0.91467 BP_Extractor for Sequence contig_33313 - ID 513 Forward for Sequence contig_33313 - ID 513 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 35050 1 172 0 Non Coding 35504 107 107 107 UTR 41 149 0 0 Phase 0 74 384 0 0 Coding 365 1 1296 0 Phase 1 88 0 384 0 Intron 135 0 5 0 Phase 2 76 0 0 384 Precision Recall F1 Precision Recall F1 Intergenic 0.98480 0.99509 0.98992 Non Coding 0.99334 0.99104 0.99219 UTR 0.98675 0.78421 0.87390 Phase 0 0.78208 0.83843 0.80927 Coding 0.87984 0.77978 0.82679 Phase 1 0.78208 0.81356 0.79751 Intron NaN 0.00000 0.00000 Phase 2 0.78208 0.83478 0.80757 Subgenic 0.87984 0.71920 0.79145 Coding 0.78208 0.82878 0.80475 Genic 0.88978 0.72540 0.79923 Reverse for Sequence contig_33313 - ID 513 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 34815 0 0 0 Non Coding 35674 0 0 0 UTR 231 0 0 0 Phase 0 510 0 0 0 Coding 1979 0 0 0 Phase 1 518 0 0 0 Intron 190 0 0 0 Phase 2 513 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93551 1.00000 0.96668 Non Coding 0.95859 1.00000 0.97886 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_33329 - ID 514 Forward for Sequence contig_33329 - ID 514 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 686 8 0 6 Non Coding 2505 74 81 67 UTR 4 333 29 4 Phase 0 10 438 0 46 Coding 1 6 1616 40 Phase 1 9 47 434 0 Intron 9 0 32 1435 Phase 2 8 0 44 446 Precision Recall F1 Precision Recall F1 Intergenic 0.98000 0.98000 0.98000 Non Coding 0.98934 0.91859 0.95265 UTR 0.95965 0.90000 0.92887 Phase 0 0.78354 0.88664 0.83191 Coding 0.96363 0.97174 0.96766 Phase 1 0.77639 0.88571 0.82745 Intron 0.96633 0.97222 0.96927 Phase 2 0.79785 0.89558 0.84390 Subgenic 0.96490 0.97197 0.96842 Coding 0.78593 0.88934 0.83444 Genic 0.96438 0.96438 0.96438 Reverse for Sequence contig_33329 - ID 514 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4209 0 0 0 Non Coding 4209 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_33331 - ID 515 Forward for Sequence contig_33331 - ID 515 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8976 3 4 63 Non Coding 9317 51 45 51 UTR 1 262 12 0 Phase 0 0 710 0 0 Coding 0 0 2266 4 Phase 1 1 0 716 0 Intron 4 0 1 6 Phase 2 1 0 0 710 Precision Recall F1 Precision Recall F1 Intergenic 0.99944 0.99226 0.99584 Non Coding 0.99979 0.98447 0.99207 UTR 0.98868 0.95273 0.97037 Phase 0 0.93298 1.00000 0.96533 Coding 0.99255 0.99824 0.99539 Phase 1 0.94087 0.99861 0.96888 Intron 0.08219 0.54545 0.14286 Phase 2 0.93298 0.99859 0.96467 Subgenic 0.96435 0.99605 0.97994 Coding 0.93561 0.99906 0.96630 Genic 0.96681 0.99139 0.97895 Reverse for Sequence contig_33331 - ID 515 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11121 2 0 0 Non Coding 11358 0 0 0 UTR 6 226 0 0 Phase 0 4 79 0 0 Coding 10 0 237 0 Phase 1 1 0 79 0 Intron 0 0 0 0 Phase 2 2 0 0 79 Precision Recall F1 Precision Recall F1 Intergenic 0.99856 0.99982 0.99919 Non Coding 0.99938 1.00000 0.99969 UTR 0.99123 0.97414 0.98261 Phase 0 1.00000 0.95181 0.97531 Coding 1.00000 0.95951 0.97934 Phase 1 1.00000 0.98750 0.99371 Intron NaN NaN NaN Phase 2 1.00000 0.97531 0.98750 Subgenic 1.00000 0.95951 0.97934 Coding 1.00000 0.97131 0.98545 Genic 0.99570 0.96660 0.98093 BP_Extractor for Sequence contig_33338 - ID 516 Forward for Sequence contig_33338 - ID 516 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5277 5 0 1 Non Coding 10679 5 5 4 UTR 30 119 0 7 Phase 0 10 639 0 0 Coding 48 0 1923 9 Phase 1 8 0 639 0 Intron 5 3 9 5201 Phase 2 8 0 0 640 Precision Recall F1 Precision Recall F1 Intergenic 0.98451 0.99886 0.99164 Non Coding 0.99757 0.99869 0.99813 UTR 0.93701 0.76282 0.84099 Phase 0 0.99224 0.98459 0.98840 Coding 0.99534 0.97121 0.98313 Phase 1 0.99224 0.98764 0.98993 Intron 0.99674 0.99674 0.99674 Phase 2 0.99379 0.98765 0.99071 Subgenic 0.99636 0.98972 0.99303 Coding 0.99275 0.98663 0.98968 Genic 0.99533 0.98491 0.99009 Reverse for Sequence contig_33338 - ID 516 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12148 0 0 0 Non Coding 12393 1 1 1 UTR 78 15 0 0 Phase 0 28 55 0 0 Coding 119 14 168 2 Phase 1 26 0 55 0 Intron 10 0 0 83 Phase 2 22 0 0 55 Precision Recall F1 Precision Recall F1 Intergenic 0.98325 1.00000 0.99155 Non Coding 0.99390 0.99976 0.99682 UTR 0.51724 0.16129 0.24590 Phase 0 0.98214 0.66265 0.79137 Coding 1.00000 0.55446 0.71338 Phase 1 0.98214 0.67901 0.80292 Intron 0.97647 0.89247 0.93258 Phase 2 0.98214 0.71429 0.82707 Subgenic 0.99209 0.63384 0.77350 Coding 0.98214 0.68465 0.80685 Genic 0.94326 0.54397 0.69001 BP_Extractor for Sequence contig_33395 - ID 517 Forward for Sequence contig_33395 - ID 517 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6229 0 0 0 Non Coding 6229 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_33395 - ID 517 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5664 6 0 0 Non Coding 5896 3 4 6 UTR 7 89 0 0 Phase 0 5 105 0 0 Coding 18 0 320 0 Phase 1 1 0 104 0 Intron 49 4 4 68 Phase 2 3 0 0 102 Precision Recall F1 Precision Recall F1 Intergenic 0.98710 0.99894 0.99299 Non Coding 0.99848 0.99780 0.99814 UTR 0.89899 0.92708 0.91282 Phase 0 0.97222 0.95455 0.96330 Coding 0.98765 0.94675 0.96677 Phase 1 0.96296 0.99048 0.97653 Intron 1.00000 0.54400 0.70466 Phase 2 0.94444 0.97143 0.95775 Subgenic 0.98980 0.83801 0.90760 Coding 0.95988 0.97188 0.96584 Genic 0.97149 0.85331 0.90857 BP_Extractor for Sequence contig_33396 - ID 518 Forward for Sequence contig_33396 - ID 518 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10229 0 0 0 Non Coding 12363 0 0 0 UTR 101 0 0 0 Phase 0 221 0 0 0 Coding 1174 0 0 0 Phase 1 226 0 0 0 Intron 1518 0 0 0 Phase 2 212 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.78552 1.00000 0.87988 Non Coding 0.94939 1.00000 0.97404 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_33396 - ID 518 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12569 0 0 0 Non Coding 12678 0 0 0 UTR 52 0 0 0 Phase 0 113 0 0 0 Coding 345 0 0 0 Phase 1 116 0 0 0 Intron 56 0 0 0 Phase 2 115 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96521 1.00000 0.98230 Non Coding 0.97358 1.00000 0.98661 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_33402 - ID 519 Forward for Sequence contig_33402 - ID 519 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12108 0 0 0 Non Coding 12108 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_33402 - ID 519 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10964 5 0 0 Non Coding 11360 9 9 9 UTR 83 62 8 0 Phase 0 125 86 34 0 Coding 499 2 379 2 Phase 1 117 0 86 34 Intron 40 0 0 64 Phase 2 119 34 0 86 Precision Recall F1 Precision Recall F1 Intergenic 0.94631 0.99954 0.97220 Non Coding 0.96920 0.99763 0.98321 UTR 0.89855 0.40523 0.55856 Phase 0 0.66667 0.35102 0.45989 Coding 0.97933 0.42971 0.59732 Phase 1 0.66667 0.36287 0.46995 Intron 0.96970 0.61538 0.75294 Phase 2 0.66667 0.35983 0.46739 Subgenic 0.97792 0.44929 0.61571 Coding 0.66667 0.35784 0.46570 Genic 0.96743 0.44337 0.60807 BP_Extractor for Sequence contig_33607 - ID 520 Forward for Sequence contig_33607 - ID 520 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5203 2 0 0 Non Coding 5390 16 8 11 UTR 2 155 2 0 Phase 0 7 554 0 0 Coding 41 7 1708 0 Phase 1 6 0 562 0 Intron 0 0 0 0 Phase 2 7 0 0 559 Precision Recall F1 Precision Recall F1 Intergenic 0.99180 0.99962 0.99569 Non Coding 0.99630 0.99355 0.99492 UTR 0.94512 0.97484 0.95975 Phase 0 0.97193 0.98752 0.97966 Coding 0.99883 0.97267 0.98557 Phase 1 0.98596 0.98944 0.98770 Intron NaN NaN NaN Phase 2 0.98070 0.98763 0.98415 Subgenic 0.99883 0.97267 0.98557 Coding 0.97953 0.98820 0.98385 Genic 0.99413 0.97285 0.98337 Reverse for Sequence contig_33607 - ID 520 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4159 3 132 11 Non Coding 5007 196 197 200 UTR 35 151 23 0 Phase 0 92 413 0 0 Coding 306 2 1658 13 Phase 1 99 0 412 0 Intron 0 0 14 613 Phase 2 95 0 0 409 Precision Recall F1 Precision Recall F1 Intergenic 0.92422 0.96609 0.94469 Non Coding 0.94597 0.89411 0.91931 UTR 0.96795 0.72249 0.82740 Phase 0 0.67816 0.81782 0.74147 Coding 0.90750 0.83780 0.87126 Phase 1 0.67652 0.80626 0.73571 Intron 0.96232 0.97767 0.96994 Phase 2 0.67159 0.81151 0.73495 Subgenic 0.92167 0.87145 0.89586 Coding 0.67542 0.81184 0.73738 Genic 0.92443 0.86039 0.89126 BP_Extractor for Sequence contig_33678 - ID 521 Forward for Sequence contig_33678 - ID 521 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21968 0 0 0 Non Coding 21968 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_33678 - ID 521 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21958 0 0 0 Non Coding 21961 0 0 0 UTR 4 0 0 0 Phase 0 2 0 0 0 Coding 6 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99954 1.00000 0.99977 Non Coding 0.99968 1.00000 0.99984 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_33727 - ID 522 Forward for Sequence contig_33727 - ID 522 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11808 8 0 0 Non Coding 14125 53 55 53 UTR 22 293 1 0 Phase 0 10 209 2 0 Coding 46 1 788 17 Phase 1 11 0 207 3 Intron 15 4 3 1943 Phase 2 11 2 0 208 Precision Recall F1 Precision Recall F1 Intergenic 0.99302 0.99932 0.99616 Non Coding 0.99774 0.98873 0.99321 UTR 0.95752 0.92722 0.94212 Phase 0 0.79167 0.94570 0.86186 Coding 0.99495 0.92488 0.95864 Phase 1 0.78409 0.93665 0.85361 Intron 0.99133 0.98880 0.99006 Phase 2 0.78788 0.94118 0.85773 Subgenic 0.99237 0.96947 0.98079 Coding 0.78788 0.94118 0.85773 Genic 0.98888 0.96521 0.97690 Reverse for Sequence contig_33727 - ID 522 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7350 1 20 0 Non Coding 13866 27 25 28 UTR 13 96 8 2 Phase 0 1 332 0 0 Coding 17 0 1039 44 Phase 1 3 0 334 0 Intron 18 0 10 6331 Phase 2 2 0 0 331 Precision Recall F1 Precision Recall F1 Intergenic 0.99351 0.99715 0.99533 Non Coding 0.99957 0.99426 0.99691 UTR 0.98969 0.80672 0.88889 Phase 0 0.92479 0.99700 0.95954 Coding 0.96472 0.94455 0.95452 Phase 1 0.93036 0.99110 0.95977 Intron 0.99279 0.99560 0.99419 Phase 2 0.92201 0.99399 0.95665 Subgenic 0.98873 0.98807 0.98840 Coding 0.92572 0.99402 0.95865 Genic 0.98874 0.98522 0.98698 BP_Extractor for Sequence contig_33765 - ID 523 Forward for Sequence contig_33765 - ID 523 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13212 0 0 0 Non Coding 13233 0 0 0 UTR 16 0 0 0 Phase 0 3 0 0 0 Coding 13 0 0 0 Phase 1 6 0 0 0 Intron 6 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99736 1.00000 0.99868 Non Coding 0.99894 1.00000 0.99947 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_33765 - ID 523 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8273 0 308 53 Non Coding 11774 264 267 267 UTR 1 172 9 3 Phase 0 4 223 0 0 Coding 32 2 1100 29 Phase 1 4 0 220 0 Intron 27 1 44 3193 Phase 2 4 0 0 220 Precision Recall F1 Precision Recall F1 Intergenic 0.99280 0.95819 0.97519 Non Coding 0.99898 0.93653 0.96675 UTR 0.98286 0.92973 0.95556 Phase 0 0.45791 0.98238 0.62465 Coding 0.75291 0.94583 0.83841 Phase 1 0.45175 0.98214 0.61885 Intron 0.97407 0.97795 0.97600 Phase 2 0.45175 0.98214 0.61885 Subgenic 0.90589 0.96951 0.93662 Coding 0.45380 0.98222 0.62079 Genic 0.90863 0.96792 0.93734 BP_Extractor for Sequence contig_33793 - ID 524 Forward for Sequence contig_33793 - ID 524 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7038 0 0 0 Non Coding 8294 0 0 0 UTR 2 942 0 0 Phase 0 2 146 0 0 Coding 0 1 438 4 Phase 1 2 0 146 0 Intron 0 0 0 312 Phase 2 1 0 0 146 Precision Recall F1 Precision Recall F1 Intergenic 0.99972 1.00000 0.99986 Non Coding 0.99940 1.00000 0.99970 UTR 0.99894 0.99788 0.99841 Phase 0 1.00000 0.98649 0.99320 Coding 1.00000 0.98871 0.99432 Phase 1 1.00000 0.98649 0.99320 Intron 0.98734 1.00000 0.99363 Phase 2 1.00000 0.99320 0.99659 Subgenic 0.99469 0.99338 0.99404 Coding 1.00000 0.98871 0.99432 Genic 0.99705 0.99588 0.99647 Reverse for Sequence contig_33793 - ID 524 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7095 20 0 0 Non Coding 7990 3 5 5 UTR 41 327 3 0 Phase 0 18 228 0 0 Coding 73 14 686 14 Phase 1 18 0 226 0 Intron 11 3 4 446 Phase 2 18 0 0 226 Precision Recall F1 Precision Recall F1 Intergenic 0.98269 0.99719 0.98988 Non Coding 0.99329 0.99838 0.99582 UTR 0.89835 0.88140 0.88980 Phase 0 0.98701 0.92683 0.95597 Coding 0.98990 0.87166 0.92703 Phase 1 0.97835 0.92623 0.95158 Intron 0.96957 0.96121 0.96537 Phase 2 0.97835 0.92623 0.95158 Subgenic 0.98179 0.90488 0.94176 Coding 0.98124 0.92643 0.95305 Genic 0.96177 0.89951 0.92960 BP_Extractor for Sequence contig_33839 - ID 525 Forward for Sequence contig_33839 - ID 525 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33597 8 44 0 Non Coding 35793 140 117 122 UTR 141 400 9 45 Phase 0 324 582 8 0 Coding 1423 15 2103 38 Phase 1 337 0 600 3 Intron 572 9 19 534 Phase 2 328 3 0 600 Precision Recall F1 Precision Recall F1 Intergenic 0.94022 0.99845 0.96846 Non Coding 0.97311 0.98952 0.98125 UTR 0.92593 0.67227 0.77897 Phase 0 0.80276 0.63676 0.71019 Coding 0.96690 0.58759 0.73097 Phase 1 0.82759 0.63830 0.72072 Intron 0.86548 0.47090 0.60994 Phase 2 0.82759 0.64447 0.72464 Subgenic 0.94448 0.55952 0.70273 Coding 0.81931 0.63986 0.71855 Genic 0.94200 0.57216 0.71191 Reverse for Sequence contig_33839 - ID 525 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33708 5 0 60 Non Coding 36132 204 214 213 UTR 45 435 0 15 Phase 0 20 716 4 0 Coding 91 8 2760 46 Phase 1 17 0 705 3 Intron 196 15 9 1564 Phase 2 19 3 0 707 Precision Recall F1 Precision Recall F1 Intergenic 0.99025 0.99808 0.99415 Non Coding 0.99845 0.98284 0.99058 UTR 0.93952 0.87879 0.90814 Phase 0 0.77573 0.96757 0.86109 Coding 0.99675 0.95009 0.97286 Phase 1 0.76381 0.97241 0.85558 Intron 0.92819 0.87668 0.90170 Phase 2 0.76598 0.96982 0.85593 Subgenic 0.97081 0.92216 0.94586 Coding 0.76851 0.96992 0.85755 Genic 0.96787 0.91802 0.94228 BP_Extractor for Sequence contig_33995 - ID 526 Forward for Sequence contig_33995 - ID 526 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7403 3 0 10 Non Coding 7714 14 13 17 UTR 16 147 0 1 Phase 0 2 117 0 0 Coding 30 0 390 21 Phase 1 2 0 118 0 Intron 37 0 3 52 Phase 2 2 0 0 114 Precision Recall F1 Precision Recall F1 Intergenic 0.98891 0.99825 0.99356 Non Coding 0.99922 0.99433 0.99677 UTR 0.98000 0.89634 0.93631 Phase 0 0.89313 0.98319 0.93600 Coding 0.99237 0.88435 0.93525 Phase 1 0.90076 0.98333 0.94024 Intron 0.61905 0.56522 0.59091 Phase 2 0.87023 0.98276 0.92308 Subgenic 0.92662 0.82927 0.87525 Coding 0.88804 0.98310 0.93316 Genic 0.93939 0.84505 0.88973 Reverse for Sequence contig_33995 - ID 526 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6239 3 0 61 Non Coding 7603 5 6 6 UTR 33 143 9 7 Phase 0 4 163 0 0 Coding 12 1 492 7 Phase 1 1 0 162 0 Intron 41 2 3 1060 Phase 2 1 0 0 162 Precision Recall F1 Precision Recall F1 Intergenic 0.98640 0.98985 0.98812 Non Coding 0.99921 0.99777 0.99849 UTR 0.95973 0.74479 0.83871 Phase 0 0.97024 0.97605 0.97313 Coding 0.97619 0.96094 0.96850 Phase 1 0.96429 0.99387 0.97885 Intron 0.93392 0.95841 0.94601 Phase 2 0.96429 0.99387 0.97885 Subgenic 0.94692 0.95921 0.95302 Coding 0.96627 0.98783 0.97693 Genic 0.94799 0.93646 0.94219 BP_Extractor for Sequence contig_34110 - ID 527 Forward for Sequence contig_34110 - ID 527 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3005 0 0 0 Non Coding 3005 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_34110 - ID 527 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3005 0 0 0 Non Coding 3005 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_34115 - ID 528 Forward for Sequence contig_34115 - ID 528 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9062 0 0 0 Non Coding 9062 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_34115 - ID 528 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8891 0 0 0 Non Coding 8883 0 0 0 UTR 13 0 0 0 Phase 0 59 0 0 0 Coding 151 0 0 0 Phase 1 65 0 0 0 Intron 7 0 0 0 Phase 2 55 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98113 1.00000 0.99048 Non Coding 0.98025 1.00000 0.99003 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_34182 - ID 529 Forward for Sequence contig_34182 - ID 529 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7795 0 0 0 Non Coding 7836 0 0 0 UTR 20 0 0 0 Phase 0 89 0 0 0 Coding 272 0 0 0 Phase 1 77 0 0 0 Intron 0 0 0 0 Phase 2 85 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96389 1.00000 0.98161 Non Coding 0.96896 1.00000 0.98424 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_34182 - ID 529 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5270 1 0 22 Non Coding 6412 6 6 7 UTR 391 129 12 9 Phase 0 312 238 0 0 Coding 966 0 720 20 Phase 1 318 0 238 0 Intron 15 0 0 532 Phase 2 313 0 0 237 Precision Recall F1 Precision Recall F1 Intergenic 0.79344 0.99565 0.88312 Non Coding 0.87179 0.99705 0.93022 UTR 0.99231 0.23845 0.38450 Phase 0 0.97541 0.43273 0.59950 Coding 0.98361 0.42204 0.59065 Phase 1 0.97541 0.42806 0.59500 Intron 0.91252 0.97258 0.94159 Phase 2 0.97131 0.43091 0.59698 Subgenic 0.95209 0.55570 0.70179 Coding 0.97404 0.43056 0.59715 Genic 0.95571 0.49427 0.65157 BP_Extractor for Sequence contig_34226 - ID 530 Forward for Sequence contig_34226 - ID 530 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12598 0 0 0 Non Coding 12627 0 0 0 UTR 23 0 0 0 Phase 0 13 0 0 0 Coding 37 0 0 0 Phase 1 11 0 0 0 Intron 3 0 0 0 Phase 2 10 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99502 1.00000 0.99751 Non Coding 0.99731 1.00000 0.99866 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_34226 - ID 530 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10050 9 0 117 Non Coding 11582 4 6 5 UTR 12 522 3 0 Phase 0 5 351 0 0 Coding 8 1 1062 14 Phase 1 4 0 349 0 Intron 13 12 0 838 Phase 2 5 0 0 350 Precision Recall F1 Precision Recall F1 Intergenic 0.99673 0.98762 0.99215 Non Coding 0.99879 0.99871 0.99875 UTR 0.95956 0.97207 0.96577 Phase 0 0.98873 0.98596 0.98734 Coding 0.99718 0.97880 0.98791 Phase 1 0.98310 0.98867 0.98588 Intron 0.86481 0.97103 0.91485 Phase 2 0.98592 0.98592 0.98592 Subgenic 0.93412 0.97536 0.95429 Coding 0.98592 0.98684 0.98638 Genic 0.93949 0.97465 0.95675 BP_Extractor for Sequence contig_34240 - ID 531 Forward for Sequence contig_34240 - ID 531 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5546 0 0 0 Non Coding 5816 0 0 0 UTR 20 0 0 0 Phase 0 47 0 0 0 Coding 245 0 0 0 Phase 1 42 0 0 0 Intron 135 0 0 0 Phase 2 41 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93273 1.00000 0.96519 Non Coding 0.97814 1.00000 0.98895 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_34240 - ID 531 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5946 0 0 0 Non Coding 5946 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_34318 - ID 532 Forward for Sequence contig_34318 - ID 532 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8856 1 0 0 Non Coding 11480 2 2 1 UTR 1 332 2 1 Phase 0 1 137 0 1 Coding 0 0 417 9 Phase 1 2 1 138 0 Intron 18 1 1 2267 Phase 2 3 0 0 138 Precision Recall F1 Precision Recall F1 Intergenic 0.99786 0.99989 0.99887 Non Coding 0.99948 0.99956 0.99952 UTR 0.99401 0.98810 0.99104 Phase 0 0.97857 0.98561 0.98208 Coding 0.99286 0.97887 0.98582 Phase 1 0.98571 0.97872 0.98221 Intron 0.99561 0.99125 0.99343 Phase 2 0.98571 0.97872 0.98221 Subgenic 0.99518 0.98931 0.99224 Coding 0.98333 0.98100 0.98216 Genic 0.99505 0.98918 0.99211 Reverse for Sequence contig_34318 - ID 532 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11906 0 0 0 Non Coding 11906 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_34407 - ID 533 Forward for Sequence contig_34407 - ID 533 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5342 0 0 0 Non Coding 5318 0 0 0 UTR 5 0 0 0 Phase 0 13 0 0 0 Coding 9 0 0 0 Phase 1 10 0 0 0 Intron 0 0 0 0 Phase 2 15 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99739 1.00000 0.99869 Non Coding 0.99291 1.00000 0.99644 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_34407 - ID 533 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4615 10 0 0 Non Coding 5146 1 1 1 UTR 0 499 0 0 Phase 0 0 69 0 0 Coding 0 0 210 0 Phase 1 0 0 69 0 Intron 22 0 0 0 Phase 2 0 0 0 69 Precision Recall F1 Precision Recall F1 Intergenic 0.99526 0.99784 0.99655 Non Coding 1.00000 0.99942 0.99971 UTR 0.98035 1.00000 0.99008 Phase 0 0.98571 1.00000 0.99281 Coding 1.00000 1.00000 1.00000 Phase 1 0.98571 1.00000 0.99281 Intron NaN 0.00000 0.00000 Phase 2 0.98571 1.00000 0.99281 Subgenic 1.00000 0.90517 0.95023 Coding 0.98571 1.00000 0.99281 Genic 0.98609 0.96990 0.97793 BP_Extractor for Sequence contig_34485 - ID 534 Forward for Sequence contig_34485 - ID 534 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 31927 0 0 0 Non Coding 33626 0 0 0 UTR 265 0 0 0 Phase 0 1182 0 0 0 Coding 4715 0 0 0 Phase 1 1167 0 0 0 Intron 226 0 0 0 Phase 2 1158 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85980 1.00000 0.92462 Non Coding 0.90556 1.00000 0.95044 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_34485 - ID 534 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 33233 7 0 0 Non Coding 34517 0 0 0 UTR 38 434 0 0 Phase 0 184 683 0 0 Coding 780 2 2049 6 Phase 1 182 0 683 0 Intron 345 3 0 236 Phase 2 201 0 0 683 Precision Recall F1 Precision Recall F1 Intergenic 0.96619 0.99979 0.98270 Non Coding 0.98384 1.00000 0.99185 UTR 0.97309 0.91949 0.94553 Phase 0 1.00000 0.78777 0.88129 Coding 1.00000 0.72224 0.83872 Phase 1 1.00000 0.78960 0.88243 Intron 0.97521 0.40411 0.57143 Phase 2 1.00000 0.77262 0.87173 Subgenic 0.99738 0.66793 0.80007 Coding 1.00000 0.78326 0.87846 Genic 0.99342 0.69843 0.82021 BP_Extractor for Sequence contig_34509 - ID 535 Forward for Sequence contig_34509 - ID 535 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2432 4 104 3 Non Coding 3794 41 44 42 UTR 13 142 0 2 Phase 0 34 199 0 0 Coding 165 2 608 9 Phase 1 30 0 196 0 Intron 243 1 8 875 Phase 2 33 0 0 198 Precision Recall F1 Precision Recall F1 Intergenic 0.85244 0.95635 0.90141 Non Coding 0.97507 0.96761 0.97133 UTR 0.95302 0.90446 0.92810 Phase 0 0.82917 0.85408 0.84144 Coding 0.84444 0.77551 0.80851 Phase 1 0.81667 0.86726 0.84120 Intron 0.98425 0.77640 0.86806 Phase 2 0.82500 0.85714 0.84076 Subgenic 0.92169 0.77603 0.84261 Coding 0.82361 0.85942 0.84113 Genic 0.92435 0.78578 0.84945 Reverse for Sequence contig_34509 - ID 535 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4611 0 0 0 Non Coding 4611 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_34510 - ID 536 Forward for Sequence contig_34510 - ID 536 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11750 0 0 0 Non Coding 11756 0 0 0 UTR 6 0 0 0 Phase 0 4 0 0 0 Coding 15 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99822 1.00000 0.99911 Non Coding 0.99873 1.00000 0.99936 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_34510 - ID 536 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8213 0 0 0 Non Coding 10827 0 0 0 UTR 62 0 0 0 Phase 0 329 0 0 0 Coding 2010 0 0 0 Phase 1 319 0 0 0 Intron 1486 0 0 0 Phase 2 296 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.69773 1.00000 0.82196 Non Coding 0.91980 1.00000 0.95823 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_34522 - ID 537 Forward for Sequence contig_34522 - ID 537 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9304 1 0 0 Non Coding 11415 3 4 3 UTR 44 186 5 0 Phase 0 17 346 0 0 Coding 90 0 1039 11 Phase 1 17 0 345 0 Intron 13 4 3 1816 Phase 2 20 0 0 346 Precision Recall F1 Precision Recall F1 Intergenic 0.98445 0.99989 0.99211 Non Coding 0.99529 0.99912 0.99720 UTR 0.97382 0.79149 0.87324 Phase 0 0.99140 0.95317 0.97191 Coding 0.99236 0.91140 0.95016 Phase 1 0.98854 0.95304 0.97046 Intron 0.99398 0.98911 0.99154 Phase 2 0.99140 0.94536 0.96783 Subgenic 0.99339 0.95934 0.97607 Coding 0.99045 0.95050 0.97007 Genic 0.99217 0.94706 0.96909 Reverse for Sequence contig_34522 - ID 537 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12516 0 0 0 Non Coding 12516 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_34591 - ID 538 Forward for Sequence contig_34591 - ID 538 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3411 0 0 0 Non Coding 3411 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_34591 - ID 538 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2806 2 0 0 Non Coding 3133 3 3 4 UTR 0 138 4 0 Phase 0 0 90 0 0 Coding 0 0 274 0 Phase 1 0 0 89 0 Intron 0 0 0 187 Phase 2 0 0 0 89 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99929 0.99964 Non Coding 1.00000 0.99682 0.99841 UTR 0.98571 0.97183 0.97872 Phase 0 0.96774 1.00000 0.98361 Coding 0.98561 1.00000 0.99275 Phase 1 0.96739 1.00000 0.98343 Intron 1.00000 1.00000 1.00000 Phase 2 0.95699 1.00000 0.97802 Subgenic 0.99140 1.00000 0.99568 Coding 0.96403 1.00000 0.98168 Genic 0.99008 0.99337 0.99172 BP_Extractor for Sequence contig_34709 - ID 539 Forward for Sequence contig_34709 - ID 539 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5996 0 2 35 Non Coding 7481 31 41 33 UTR 12 87 14 28 Phase 0 3 365 0 0 Coding 0 1 1170 16 Phase 1 2 0 355 0 Intron 32 0 2 1281 Phase 2 2 0 0 363 Precision Recall F1 Precision Recall F1 Intergenic 0.99272 0.99387 0.99329 Non Coding 0.99907 0.98616 0.99257 UTR 0.98864 0.61702 0.75983 Phase 0 0.92172 0.99185 0.95550 Coding 0.98485 0.98568 0.98526 Phase 1 0.89646 0.99440 0.94290 Intron 0.94191 0.97414 0.95776 Phase 2 0.91667 0.99452 0.95401 Subgenic 0.96193 0.97962 0.97069 Coding 0.91162 0.99358 0.95083 Genic 0.96282 0.96027 0.96155 Reverse for Sequence contig_34709 - ID 539 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4939 3 0 0 Non Coding 7868 3 0 1 UTR 5 257 2 0 Phase 0 4 264 0 0 Coding 0 0 797 6 Phase 1 2 0 267 0 Intron 0 0 2 2665 Phase 2 1 0 0 266 Precision Recall F1 Precision Recall F1 Intergenic 0.99899 0.99939 0.99919 Non Coding 0.99911 0.99949 0.99930 UTR 0.98846 0.97348 0.98092 Phase 0 0.98876 0.98507 0.98692 Coding 0.99501 0.99253 0.99377 Phase 1 1.00000 0.99257 0.99627 Intron 0.99775 0.99925 0.99850 Phase 2 0.99625 0.99625 0.99625 Subgenic 0.99712 0.99769 0.99741 Coding 0.99501 0.99129 0.99315 Genic 0.99652 0.99598 0.99625 BP_Extractor for Sequence contig_34784 - ID 540 Forward for Sequence contig_34784 - ID 540 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14112 0 0 0 Non Coding 14305 0 0 0 UTR 70 0 0 0 Phase 0 185 0 0 0 Coding 666 0 0 0 Phase 1 184 0 0 0 Intron 10 0 0 0 Phase 2 184 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94979 1.00000 0.97425 Non Coding 0.96278 1.00000 0.98104 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_34784 - ID 540 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11075 7 7 227 Non Coding 12282 172 199 183 UTR 9 157 21 12 Phase 0 15 672 0 0 Coding 15 1 2489 106 Phase 1 14 0 645 0 Intron 14 1 16 701 Phase 2 14 1 0 661 Precision Recall F1 Precision Recall F1 Intergenic 0.99658 0.97870 0.98756 Non Coding 0.99651 0.95684 0.97627 UTR 0.94578 0.78894 0.86027 Phase 0 0.79527 0.97817 0.87728 Coding 0.98263 0.95327 0.96773 Phase 1 0.76422 0.97876 0.85828 Intron 0.67017 0.95765 0.78853 Phase 2 0.78318 0.97781 0.86974 Subgenic 0.89131 0.95423 0.92170 Coding 0.78089 0.97824 0.86850 Genic 0.89372 0.94495 0.91862 BP_Extractor for Sequence contig_34884 - ID 541 Forward for Sequence contig_34884 - ID 541 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4563 0 0 0 Non Coding 4563 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_34884 - ID 541 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4029 0 0 0 Non Coding 4144 0 0 0 UTR 23 0 0 0 Phase 0 140 0 0 0 Coding 483 0 0 0 Phase 1 139 0 0 0 Intron 28 0 0 0 Phase 2 140 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88297 1.00000 0.93785 Non Coding 0.90817 1.00000 0.95188 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_34916 - ID 542 Forward for Sequence contig_34916 - ID 542 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13772 1 101 0 Non Coding 15367 453 469 469 UTR 15 149 12 34 Phase 0 17 836 0 0 Coding 32 7 3749 60 Phase 1 15 0 820 0 Intron 34 0 5 1314 Phase 2 19 0 0 820 Precision Recall F1 Precision Recall F1 Intergenic 0.99415 0.99265 0.99340 Non Coding 0.99669 0.91699 0.95518 UTR 0.94904 0.70952 0.81199 Phase 0 0.64856 0.98007 0.78058 Coding 0.96949 0.97427 0.97187 Phase 1 0.63615 0.98204 0.77213 Intron 0.93324 0.97118 0.95183 Phase 2 0.63615 0.97735 0.77068 Subgenic 0.95981 0.97347 0.96659 Coding 0.64029 0.97982 0.77448 Genic 0.95950 0.96322 0.96136 Reverse for Sequence contig_34916 - ID 542 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18902 0 0 0 Non Coding 19150 0 0 0 UTR 63 0 0 0 Phase 0 46 0 0 0 Coding 297 0 0 0 Phase 1 48 0 0 0 Intron 23 0 0 0 Phase 2 41 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98014 1.00000 0.98997 Non Coding 0.99300 1.00000 0.99649 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_34988 - ID 543 Forward for Sequence contig_34988 - ID 543 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9450 3 3 352 Non Coding 11865 62 64 70 UTR 111 95 4 14 Phase 0 94 349 0 0 Coding 441 2 1219 6 Phase 1 108 0 347 0 Intron 384 4 7 1305 Phase 2 100 0 0 341 Precision Recall F1 Precision Recall F1 Intergenic 0.90988 0.96350 0.93592 Non Coding 0.97518 0.98375 0.97945 UTR 0.91346 0.42411 0.57927 Phase 0 0.84915 0.78781 0.81733 Coding 0.98865 0.73082 0.84040 Phase 1 0.84428 0.76264 0.80139 Intron 0.77818 0.76765 0.77288 Phase 2 0.82968 0.77324 0.80047 Subgenic 0.86735 0.74941 0.80408 Coding 0.84104 0.77446 0.80638 Genic 0.86894 0.72912 0.79292 Reverse for Sequence contig_34988 - ID 543 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9417 0 0 0 Non Coding 11711 9 8 8 UTR 163 119 12 0 Phase 0 23 531 1 0 Coding 67 0 1602 5 Phase 1 23 0 531 0 Intron 148 0 6 1861 Phase 2 23 0 0 532 Precision Recall F1 Precision Recall F1 Intergenic 0.96141 1.00000 0.98032 Non Coding 0.99414 0.99787 0.99600 UTR 1.00000 0.40476 0.57627 Phase 0 0.98333 0.95676 0.96986 Coding 0.98889 0.95699 0.97268 Phase 1 0.98333 0.95848 0.97075 Intron 0.99732 0.92357 0.95903 Phase 2 0.98519 0.95856 0.97169 Subgenic 0.99340 0.93874 0.96530 Coding 0.98395 0.95793 0.97077 Genic 0.99362 0.89932 0.94412 BP_Extractor for Sequence contig_35101 - ID 544 Forward for Sequence contig_35101 - ID 544 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2246 4 0 0 Non Coding 6204 11 10 11 UTR 3 972 9 6 Phase 0 6 475 0 0 Coding 0 1 1446 20 Phase 1 5 0 476 0 Intron 0 0 3 2967 Phase 2 4 0 0 475 Precision Recall F1 Precision Recall F1 Intergenic 0.99867 0.99822 0.99844 Non Coding 0.99759 0.99487 0.99623 UTR 0.99488 0.98182 0.98831 Phase 0 0.97737 0.98753 0.98242 Coding 0.99177 0.98569 0.98872 Phase 1 0.97942 0.98960 0.98449 Intron 0.99131 0.99899 0.99514 Phase 2 0.97737 0.99165 0.98446 Subgenic 0.99146 0.99459 0.99302 Coding 0.97805 0.98959 0.98379 Genic 0.99208 0.99226 0.99217 Reverse for Sequence contig_35101 - ID 544 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7677 0 0 0 Non Coding 7677 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_35156 - ID 545 Forward for Sequence contig_35156 - ID 545 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5974 0 0 0 Non Coding 8475 7 6 8 UTR 6 245 2 0 Phase 0 1 690 0 0 Coding 0 0 2077 1 Phase 1 0 0 691 0 Intron 0 0 12 2250 Phase 2 0 0 0 689 Precision Recall F1 Precision Recall F1 Intergenic 0.99900 1.00000 0.99950 Non Coding 0.99988 0.99753 0.99870 UTR 1.00000 0.96838 0.98394 Phase 0 0.98996 0.99855 0.99424 Coding 0.99330 0.99952 0.99640 Phase 1 0.99139 1.00000 0.99568 Intron 0.99956 0.99469 0.99712 Phase 2 0.98852 1.00000 0.99423 Subgenic 0.99655 0.99700 0.99677 Coding 0.98996 0.99952 0.99471 Genic 0.99673 0.99543 0.99608 Reverse for Sequence contig_35156 - ID 545 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8958 2 6 0 Non Coding 9727 16 18 17 UTR 19 31 4 0 Phase 0 9 254 0 0 Coding 123 4 785 1 Phase 1 6 0 254 1 Intron 12 0 21 601 Phase 2 9 2 0 254 Precision Recall F1 Precision Recall F1 Intergenic 0.98310 0.99911 0.99104 Non Coding 0.99754 0.99478 0.99616 UTR 0.83784 0.57407 0.68132 Phase 0 0.93382 0.96578 0.94953 Coding 0.96201 0.85980 0.90804 Phase 1 0.93382 0.97318 0.95310 Intron 0.99834 0.94795 0.97249 Phase 2 0.93382 0.95849 0.94600 Subgenic 0.97743 0.89593 0.93491 Coding 0.93382 0.96578 0.94953 Genic 0.97388 0.88507 0.92736 BP_Extractor for Sequence contig_35220 - ID 546 Forward for Sequence contig_35220 - ID 546 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15167 0 0 0 Non Coding 15207 0 0 0 UTR 27 0 0 0 Phase 0 18 0 0 0 Coding 63 0 0 0 Phase 1 16 0 0 0 Intron 1 0 0 0 Phase 2 17 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99404 1.00000 0.99701 Non Coding 0.99666 1.00000 0.99833 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_35220 - ID 546 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15133 0 0 0 Non Coding 15158 0 0 0 UTR 7 0 0 0 Phase 0 35 0 0 0 Coding 108 0 0 0 Phase 1 31 0 0 0 Intron 10 0 0 0 Phase 2 34 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99181 1.00000 0.99589 Non Coding 0.99345 1.00000 0.99671 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_35342 - ID 547 Forward for Sequence contig_35342 - ID 547 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4812 0 0 0 Non Coding 4812 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_35342 - ID 547 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4812 0 0 0 Non Coding 4812 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_35391 - ID 548 Forward for Sequence contig_35391 - ID 548 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2265 1 0 33 Non Coding 7456 39 30 35 UTR 5 136 0 5 Phase 0 5 156 0 0 Coding 0 5 576 23 Phase 1 9 0 165 0 Intron 43 3 9 4960 Phase 2 9 0 0 160 Precision Recall F1 Precision Recall F1 Intergenic 0.97925 0.98521 0.98222 Non Coding 0.99692 0.98624 0.99156 UTR 0.93793 0.93151 0.93471 Phase 0 0.80000 0.96894 0.87640 Coding 0.98462 0.95364 0.96888 Phase 1 0.84615 0.94828 0.89431 Intron 0.98785 0.98903 0.98844 Phase 2 0.82051 0.94675 0.87912 Subgenic 0.98751 0.98523 0.98637 Coding 0.82222 0.95437 0.88338 Genic 0.98626 0.98387 0.98506 Reverse for Sequence contig_35391 - ID 548 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8029 0 0 0 Non Coding 8036 0 0 0 UTR 10 0 0 0 Phase 0 9 0 0 0 Coding 23 0 0 0 Phase 1 8 0 0 0 Intron 2 0 0 0 Phase 2 11 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99566 1.00000 0.99783 Non Coding 0.99653 1.00000 0.99826 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_35478 - ID 549 Forward for Sequence contig_35478 - ID 549 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3743 0 0 0 Non Coding 4079 19 12 18 UTR 34 150 16 0 Phase 0 316 240 0 0 Coding 955 0 756 15 Phase 1 312 0 247 0 Intron 0 0 5 124 Phase 2 314 0 0 241 Precision Recall F1 Precision Recall F1 Intergenic 0.79100 1.00000 0.88330 Non Coding 0.81239 0.98813 0.89168 UTR 1.00000 0.75000 0.85714 Phase 0 0.92664 0.43165 0.58896 Coding 0.97297 0.43801 0.60408 Phase 1 0.95367 0.44186 0.60391 Intron 0.89209 0.96124 0.92537 Phase 2 0.93050 0.43423 0.59214 Subgenic 0.96070 0.47439 0.63515 Coding 0.93694 0.43593 0.59501 Genic 0.96623 0.50122 0.66004 Reverse for Sequence contig_35478 - ID 549 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5281 6 5 79 Non Coding 5411 14 14 15 UTR 10 20 22 2 Phase 0 2 113 0 0 Coding 15 0 352 0 Phase 1 2 0 113 0 Intron 0 0 2 4 Phase 2 2 0 0 112 Precision Recall F1 Precision Recall F1 Intergenic 0.99529 0.98324 0.98923 Non Coding 0.99889 0.99212 0.99549 UTR 0.76923 0.37037 0.50000 Phase 0 0.88976 0.98261 0.93388 Coding 0.92388 0.95913 0.94118 Phase 1 0.88976 0.98261 0.93388 Intron 0.04706 0.66667 0.08791 Phase 2 0.88189 0.98246 0.92946 Subgenic 0.76395 0.95442 0.84863 Coding 0.88714 0.98256 0.93241 Genic 0.76423 0.88056 0.81828 BP_Extractor for Sequence contig_35492 - ID 550 Forward for Sequence contig_35492 - ID 550 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16865 0 0 0 Non Coding 17387 0 0 0 UTR 134 0 0 0 Phase 0 431 0 0 0 Coding 1564 0 0 0 Phase 1 416 0 0 0 Intron 100 0 0 0 Phase 2 429 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90366 1.00000 0.94939 Non Coding 0.93163 1.00000 0.96460 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_35492 - ID 550 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12833 3 0 0 Non Coding 16945 8 10 8 UTR 0 501 9 0 Phase 0 10 554 0 0 Coding 6 9 1664 18 Phase 1 10 0 552 0 Intron 4 0 13 3603 Phase 2 12 0 0 554 Precision Recall F1 Precision Recall F1 Intergenic 0.99922 0.99977 0.99949 Non Coding 0.99812 0.99847 0.99829 UTR 0.97661 0.98235 0.97947 Phase 0 0.98577 0.98227 0.98401 Coding 0.98695 0.98055 0.98374 Phase 1 0.98221 0.98221 0.98221 Intron 0.99503 0.99530 0.99517 Phase 2 0.98577 0.97880 0.98227 Subgenic 0.99246 0.99060 0.99153 Coding 0.98458 0.98109 0.98283 Genic 0.99107 0.98987 0.99047 BP_Extractor for Sequence contig_35532 - ID 551 Forward for Sequence contig_35532 - ID 551 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17733 23 0 0 Non Coding 18960 5 4 5 UTR 90 836 6 0 Phase 0 0 110 5 0 Coding 0 0 348 0 Phase 1 0 0 110 4 Intron 0 0 3 278 Phase 2 0 4 0 110 Precision Recall F1 Precision Recall F1 Intergenic 0.99495 0.99870 0.99682 Non Coding 1.00000 0.99926 0.99963 UTR 0.97322 0.89700 0.93356 Phase 0 0.92437 0.95652 0.94017 Coding 0.97479 1.00000 0.98723 Phase 1 0.92437 0.96491 0.94421 Intron 1.00000 0.98932 0.99463 Phase 2 0.92437 0.96491 0.94421 Subgenic 0.98583 0.99523 0.99051 Coding 0.92437 0.96210 0.94286 Genic 0.97858 0.93658 0.95712 Reverse for Sequence contig_35532 - ID 551 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17682 0 0 40 Non Coding 18715 1 1 1 UTR 20 87 0 0 Phase 0 26 173 0 0 Coding 69 0 520 19 Phase 1 27 0 173 0 Intron 5 2 2 871 Phase 2 27 0 0 173 Precision Recall F1 Precision Recall F1 Intergenic 0.99471 0.99774 0.99623 Non Coding 0.99574 0.99984 0.99779 UTR 0.97753 0.81308 0.88776 Phase 0 0.99425 0.86935 0.92761 Coding 0.99617 0.85526 0.92035 Phase 1 0.99425 0.86500 0.92513 Intron 0.93656 0.98977 0.96243 Phase 2 0.99425 0.86500 0.92513 Subgenic 0.95799 0.93481 0.94626 Coding 0.99425 0.86644 0.92596 Genic 0.95912 0.92665 0.94260 BP_Extractor for Sequence contig_35607 - ID 552 Forward for Sequence contig_35607 - ID 552 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12030 15 0 0 Non Coding 13892 1 1 1 UTR 13 358 0 0 Phase 0 3 178 0 0 Coding 10 0 534 1 Phase 1 5 0 178 0 Intron 5 1 3 1472 Phase 2 5 0 0 178 Precision Recall F1 Precision Recall F1 Intergenic 0.99768 0.99875 0.99822 Non Coding 0.99907 0.99978 0.99942 UTR 0.95722 0.96496 0.96107 Phase 0 0.99441 0.98343 0.98889 Coding 0.99441 0.97982 0.98706 Phase 1 0.99441 0.97268 0.98343 Intron 0.99932 0.99392 0.99661 Phase 2 0.99441 0.97268 0.98343 Subgenic 0.99801 0.99013 0.99405 Coding 0.99441 0.97623 0.98524 Genic 0.99161 0.98623 0.98891 Reverse for Sequence contig_35607 - ID 552 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8046 25 0 3 Non Coding 13049 97 104 104 UTR 68 404 3 5 Phase 0 39 331 0 0 Coding 116 1 1273 22 Phase 1 33 0 324 0 Intron 287 1 8 4180 Phase 2 37 0 0 324 Precision Recall F1 Precision Recall F1 Intergenic 0.94470 0.99653 0.96992 Non Coding 0.99172 0.97716 0.98438 UTR 0.93735 0.84167 0.88694 Phase 0 0.77336 0.89459 0.82957 Coding 0.99143 0.90156 0.94436 Phase 1 0.75701 0.90756 0.82548 Intron 0.99287 0.93387 0.96247 Phase 2 0.75701 0.89751 0.82129 Subgenic 0.99254 0.92612 0.95818 Coding 0.76246 0.89982 0.82546 Genic 0.98852 0.91976 0.95290 BP_Extractor for Sequence contig_35678 - ID 553 Forward for Sequence contig_35678 - ID 553 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4152 0 0 0 Non Coding 4152 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_35678 - ID 553 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4152 0 0 0 Non Coding 4152 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_35702 - ID 554 Forward for Sequence contig_35702 - ID 554 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6381 0 3 0 Non Coding 7343 124 129 141 UTR 19 123 5 13 Phase 0 55 1783 5 0 Coding 148 5 5695 140 Phase 1 51 0 1776 5 Intron 18 0 27 646 Phase 2 44 3 0 1764 Precision Recall F1 Precision Recall F1 Intergenic 0.97182 0.99953 0.98548 Non Coding 0.97998 0.94908 0.96428 UTR 0.96094 0.76875 0.85417 Phase 0 0.93351 0.96744 0.95017 Coding 0.99389 0.95107 0.97201 Phase 1 0.92984 0.96943 0.94923 Intron 0.80851 0.93488 0.86711 Phase 2 0.92356 0.97405 0.94813 Subgenic 0.97121 0.94939 0.96018 Coding 0.92897 0.97029 0.94918 Genic 0.97101 0.94517 0.95791 Reverse for Sequence contig_35702 - ID 554 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11740 0 0 0 Non Coding 12056 1 0 0 UTR 11 305 1 0 Phase 0 2 387 0 0 Coding 3 0 1163 0 Phase 1 0 0 388 0 Intron 0 0 0 0 Phase 2 1 0 0 388 Precision Recall F1 Precision Recall F1 Intergenic 0.99881 1.00000 0.99940 Non Coding 0.99975 0.99992 0.99983 UTR 1.00000 0.96215 0.98071 Phase 0 0.99742 0.99486 0.99614 Coding 0.99914 0.99743 0.99828 Phase 1 1.00000 1.00000 1.00000 Intron NaN NaN NaN Phase 2 1.00000 0.99743 0.99871 Subgenic 0.99914 0.99743 0.99828 Coding 0.99914 0.99743 0.99828 Genic 0.99932 0.98989 0.99458 BP_Extractor for Sequence contig_35721 - ID 555 Forward for Sequence contig_35721 - ID 555 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6311 5 0 0 Non Coding 6499 5 4 5 UTR 2 108 0 0 Phase 0 7 148 0 0 Coding 84 0 459 0 Phase 1 8 0 149 0 Intron 10 0 0 0 Phase 2 6 0 0 148 Precision Recall F1 Precision Recall F1 Intergenic 0.98502 0.99921 0.99206 Non Coding 0.99678 0.99785 0.99731 UTR 0.95575 0.98182 0.96861 Phase 0 0.96732 0.95484 0.96104 Coding 1.00000 0.84530 0.91617 Phase 1 0.97386 0.94904 0.96129 Intron NaN 0.00000 0.00000 Phase 2 0.96732 0.96104 0.96417 Subgenic 1.00000 0.83002 0.90711 Coding 0.96950 0.95494 0.96216 Genic 0.99126 0.85520 0.91822 Reverse for Sequence contig_35721 - ID 555 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6979 0 0 0 Non Coding 6979 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_35840 - ID 556 Forward for Sequence contig_35840 - ID 556 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7942 0 0 0 Non Coding 7942 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_35840 - ID 556 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7941 0 0 0 Non Coding 7940 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99987 1.00000 0.99994 Non Coding 0.99975 1.00000 0.99987 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_35954 - ID 557 Forward for Sequence contig_35954 - ID 557 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4994 0 0 0 Non Coding 4989 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 1 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99980 1.00000 0.99990 Non Coding 0.99880 1.00000 0.99940 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_35954 - ID 557 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4995 0 0 0 Non Coding 4995 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_36200 - ID 558 Forward for Sequence contig_36200 - ID 558 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6154 0 0 0 Non Coding 6156 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 9 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99854 1.00000 0.99927 Non Coding 0.99886 1.00000 0.99943 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_36200 - ID 558 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6163 0 0 0 Non Coding 6163 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_36254 - ID 559 Forward for Sequence contig_36254 - ID 559 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9763 0 0 0 Non Coding 9968 0 0 0 UTR 153 0 0 0 Phase 0 14 0 0 0 Coding 78 0 0 0 Phase 1 15 0 0 0 Intron 16 0 0 0 Phase 2 13 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97532 1.00000 0.98751 Non Coding 0.99580 1.00000 0.99790 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_36254 - ID 559 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6946 26 3 107 Non Coding 7870 28 24 35 UTR 98 453 3 10 Phase 0 16 669 0 1 Coding 82 0 2076 28 Phase 1 20 0 672 0 Intron 0 0 9 169 Phase 2 13 0 1 661 Precision Recall F1 Precision Recall F1 Intergenic 0.97474 0.98080 0.97776 Non Coding 0.99381 0.98907 0.99143 UTR 0.94572 0.80319 0.86865 Phase 0 0.95983 0.97522 0.96746 Coding 0.99283 0.94968 0.97077 Phase 1 0.96413 0.97110 0.96760 Intron 0.53822 0.94944 0.68699 Phase 2 0.94835 0.97926 0.96356 Subgenic 0.93347 0.94966 0.94150 Coding 0.95744 0.97516 0.96622 Genic 0.93551 0.92145 0.92842 BP_Extractor for Sequence contig_36319 - ID 560 Forward for Sequence contig_36319 - ID 560 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14647 0 0 0 Non Coding 14653 0 0 0 UTR 1 0 0 0 Phase 0 1 0 0 0 Coding 6 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99952 1.00000 0.99976 Non Coding 0.99993 1.00000 0.99997 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_36319 - ID 560 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10739 1 0 0 Non Coding 13914 42 44 45 UTR 15 69 17 1 Phase 0 11 193 0 0 Coding 21 1 676 27 Phase 1 12 0 192 0 Intron 31 0 15 3041 Phase 2 9 1 0 191 Precision Recall F1 Precision Recall F1 Intergenic 0.99380 0.99991 0.99684 Non Coding 0.99771 0.99067 0.99418 UTR 0.97183 0.67647 0.79769 Phase 0 0.81780 0.94608 0.87727 Coding 0.95480 0.93241 0.94348 Phase 1 0.81356 0.94118 0.87273 Intron 0.99088 0.98510 0.98798 Phase 2 0.80932 0.95025 0.87414 Subgenic 0.98411 0.97508 0.97958 Coding 0.81356 0.94581 0.87472 Genic 0.98389 0.96730 0.97552 BP_Extractor for Sequence contig_36483 - ID 561 Forward for Sequence contig_36483 - ID 561 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5363 3 50 0 Non Coding 7210 49 41 52 UTR 11 229 10 7 Phase 0 14 849 0 0 Coding 235 12 2620 7 Phase 1 11 0 857 0 Intron 25 3 14 1351 Phase 2 11 0 0 846 Precision Recall F1 Precision Recall F1 Intergenic 0.95190 0.99021 0.97068 Non Coding 0.99503 0.98069 0.98781 UTR 0.92713 0.89105 0.90873 Phase 0 0.94543 0.98378 0.96422 Coding 0.97253 0.91162 0.94109 Phase 1 0.95434 0.98733 0.97055 Intron 0.98974 0.96985 0.97970 Phase 2 0.94209 0.98716 0.96410 Subgenic 0.97832 0.93063 0.95388 Coding 0.94729 0.98609 0.96630 Genic 0.97538 0.92838 0.95130 Reverse for Sequence contig_36483 - ID 561 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7880 3 40 32 Non Coding 8167 174 183 175 UTR 22 125 4 2 Phase 0 7 407 1 0 Coding 22 1 1704 32 Phase 1 9 0 399 2 Intron 15 1 1 56 Phase 2 8 2 0 406 Precision Recall F1 Precision Recall F1 Intergenic 0.99257 0.99057 0.99157 Non Coding 0.99707 0.93884 0.96708 UTR 0.96154 0.81699 0.88339 Phase 0 0.69811 0.98072 0.81563 Coding 0.97427 0.96873 0.97149 Phase 1 0.68439 0.97317 0.80363 Intron 0.45902 0.76712 0.57436 Phase 2 0.69640 0.97596 0.81281 Subgenic 0.94067 0.96070 0.95058 Coding 0.69297 0.97663 0.81070 Genic 0.94203 0.94962 0.94581 BP_Extractor for Sequence contig_36606 - ID 562 Forward for Sequence contig_36606 - ID 562 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2114 6 1 92 Non Coding 2808 9 10 8 UTR 3 339 3 7 Phase 0 8 322 0 0 Coding 0 2 974 22 Phase 1 8 0 321 0 Intron 38 2 15 207 Phase 2 8 0 0 323 Precision Recall F1 Precision Recall F1 Intergenic 0.98097 0.95526 0.96795 Non Coding 0.99153 0.99048 0.99100 UTR 0.97135 0.96307 0.96719 Phase 0 0.97281 0.97576 0.97428 Coding 0.98087 0.97595 0.97840 Phase 1 0.96979 0.97568 0.97273 Intron 0.63110 0.79008 0.70169 Phase 2 0.97583 0.97583 0.97583 Subgenic 0.89402 0.93730 0.91515 Coding 0.97281 0.97576 0.97428 Genic 0.91018 0.94293 0.92626 Reverse for Sequence contig_36606 - ID 562 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3824 0 0 0 Non Coding 3824 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99974 1.00000 0.99987 Non Coding 0.99974 1.00000 0.99987 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_36682 - ID 563 Forward for Sequence contig_36682 - ID 563 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19429 7 173 104 Non Coding 25891 213 209 213 UTR 62 243 9 6 Phase 0 85 633 3 0 Coding 421 10 2349 21 Phase 1 91 0 637 1 Intron 94 20 16 5742 Phase 2 92 3 0 635 Precision Recall F1 Precision Recall F1 Intergenic 0.97116 0.98559 0.97832 Non Coding 0.98975 0.97606 0.98286 UTR 0.86786 0.75938 0.81000 Phase 0 0.74558 0.87795 0.80637 Coding 0.92226 0.83863 0.87846 Phase 1 0.75029 0.87380 0.80735 Intron 0.97769 0.97786 0.97778 Phase 2 0.74794 0.86986 0.80431 Subgenic 0.96093 0.93290 0.94670 Coding 0.74794 0.87385 0.80601 Genic 0.95793 0.92672 0.94207 Reverse for Sequence contig_36682 - ID 563 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28706 0 0 0 Non Coding 28706 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_36700 - ID 564 Forward for Sequence contig_36700 - ID 564 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9411 0 0 0 Non Coding 9411 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_36700 - ID 564 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9355 0 0 0 Non Coding 9320 0 0 0 UTR 25 0 0 0 Phase 0 36 0 0 0 Coding 31 0 0 0 Phase 1 23 0 0 0 Intron 0 0 0 0 Phase 2 32 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99405 1.00000 0.99702 Non Coding 0.99033 1.00000 0.99514 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_36737 - ID 565 Forward for Sequence contig_36737 - ID 565 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23991 0 0 0 Non Coding 24018 0 0 0 UTR 25 0 0 0 Phase 0 18 0 0 0 Coding 43 0 0 0 Phase 1 12 0 0 0 Intron 0 0 0 0 Phase 2 11 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99717 1.00000 0.99858 Non Coding 0.99830 1.00000 0.99915 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_36737 - ID 565 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15564 25 45 1 Non Coding 20751 111 102 108 UTR 33 519 14 6 Phase 0 98 901 0 0 Coding 197 9 2954 58 Phase 1 69 0 910 0 Intron 777 12 23 3822 Phase 2 105 0 0 904 Precision Recall F1 Precision Recall F1 Intergenic 0.93923 0.99546 0.96653 Non Coding 0.98706 0.98477 0.98591 UTR 0.91858 0.90734 0.91293 Phase 0 0.89032 0.90190 0.89607 Coding 0.97299 0.91796 0.94468 Phase 1 0.89921 0.92952 0.91411 Intron 0.98328 0.82477 0.89708 Phase 2 0.89328 0.89594 0.89461 Subgenic 0.97877 0.86296 0.91723 Coding 0.89427 0.90894 0.90154 Genic 0.97423 0.86598 0.91692 BP_Extractor for Sequence contig_36820 - ID 566 Forward for Sequence contig_36820 - ID 566 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2541 0 0 0 Non Coding 2817 24 17 23 UTR 0 208 2 0 Phase 0 0 102 0 0 Coding 2 0 376 16 Phase 1 0 0 109 0 Intron 0 0 0 52 Phase 2 2 0 0 103 Precision Recall F1 Precision Recall F1 Intergenic 0.99921 1.00000 0.99961 Non Coding 0.99929 0.97779 0.98842 UTR 1.00000 0.99048 0.99522 Phase 0 0.80952 1.00000 0.89474 Coding 0.99471 0.95431 0.97409 Phase 1 0.86508 1.00000 0.92766 Intron 0.76471 1.00000 0.86667 Phase 2 0.81746 0.98095 0.89177 Subgenic 0.95964 0.95964 0.95964 Coding 0.83069 0.99367 0.90490 Genic 0.97248 0.96951 0.97099 Reverse for Sequence contig_36820 - ID 566 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2170 0 0 0 Non Coding 2472 1 0 0 UTR 45 89 1 0 Phase 0 41 203 0 0 Coding 123 31 611 0 Phase 1 31 0 204 0 Intron 24 3 0 100 Phase 2 41 0 0 204 Precision Recall F1 Precision Recall F1 Intergenic 0.91871 1.00000 0.95763 Non Coding 0.95629 0.99960 0.97746 UTR 0.72358 0.65926 0.68992 Phase 0 0.99510 0.83197 0.90625 Coding 0.99837 0.79869 0.88744 Phase 1 1.00000 0.86809 0.92938 Intron 1.00000 0.78740 0.88106 Phase 2 1.00000 0.83265 0.90869 Subgenic 0.99860 0.79709 0.88653 Coding 0.99837 0.84392 0.91467 Genic 0.95808 0.77897 0.85929 BP_Extractor for Sequence contig_36821 - ID 567 Forward for Sequence contig_36821 - ID 567 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11241 0 0 0 Non Coding 11241 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_36821 - ID 567 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11195 0 0 0 Non Coding 11225 0 0 0 UTR 25 0 0 0 Phase 0 5 0 0 0 Coding 21 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99591 1.00000 0.99795 Non Coding 0.99858 1.00000 0.99929 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_36923 - ID 568 Forward for Sequence contig_36923 - ID 568 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8539 0 0 0 Non Coding 8636 0 0 0 UTR 24 0 0 0 Phase 0 68 0 0 0 Coding 255 0 0 0 Phase 1 69 0 0 0 Intron 16 0 0 0 Phase 2 61 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96661 1.00000 0.98302 Non Coding 0.97759 1.00000 0.98867 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_36923 - ID 568 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4438 2 8 74 Non Coding 5162 75 64 79 UTR 17 118 39 34 Phase 0 4 1145 0 0 Coding 12 2 3601 4 Phase 1 4 0 1156 0 Intron 0 0 12 473 Phase 2 4 0 0 1141 Precision Recall F1 Precision Recall F1 Intergenic 0.99351 0.98142 0.98743 Non Coding 0.99768 0.95948 0.97821 UTR 0.96721 0.56731 0.71515 Phase 0 0.93852 0.99652 0.96665 Coding 0.98388 0.99503 0.98942 Phase 1 0.94754 0.99655 0.97143 Intron 0.80855 0.97526 0.88411 Phase 2 0.93525 0.99651 0.96490 Subgenic 0.95972 0.99269 0.97593 Coding 0.94044 0.99653 0.96767 Genic 0.95993 0.97217 0.96601 BP_Extractor for Sequence contig_36947 - ID 569 Forward for Sequence contig_36947 - ID 569 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 24172 0 0 0 Non Coding 27057 0 0 0 UTR 226 0 0 0 Phase 0 398 0 0 0 Coding 3352 0 0 0 Phase 1 457 0 0 0 Intron 652 0 0 0 Phase 2 490 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85107 1.00000 0.91954 Non Coding 0.95264 1.00000 0.97575 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_36947 - ID 569 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 28402 0 0 0 Non Coding 28402 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_37079 - ID 570 Forward for Sequence contig_37079 - ID 570 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21003 0 0 0 Non Coding 21003 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_37079 - ID 570 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21003 0 0 0 Non Coding 21003 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_37234 - ID 571 Forward for Sequence contig_37234 - ID 571 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13854 12 0 38 Non Coding 16687 15 14 18 UTR 17 577 22 2 Phase 0 7 621 0 0 Coding 3 12 1883 9 Phase 1 6 3 624 0 Intron 20 0 12 2162 Phase 2 6 0 1 621 Precision Recall F1 Precision Recall F1 Intergenic 0.99712 0.99640 0.99676 Non Coding 0.99886 0.99719 0.99803 UTR 0.96007 0.93366 0.94668 Phase 0 0.97183 0.98885 0.98027 Coding 0.98226 0.98741 0.98483 Phase 1 0.97653 0.98578 0.98113 Intron 0.97784 0.98541 0.98161 Phase 2 0.97183 0.98885 0.98027 Subgenic 0.97989 0.98634 0.98311 Coding 0.97340 0.98782 0.98056 Genic 0.97737 0.97944 0.97841 Reverse for Sequence contig_37234 - ID 571 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10577 1 0 0 Non Coding 16097 2 2 1 UTR 29 497 0 10 Phase 0 304 532 0 0 Coding 875 1 1599 17 Phase 1 311 0 532 0 Intron 0 0 3 5014 Phase 2 309 0 0 533 Precision Recall F1 Precision Recall F1 Intergenic 0.92126 0.99991 0.95897 Non Coding 0.94571 0.99969 0.97195 UTR 0.99599 0.92724 0.96039 Phase 0 0.99625 0.63636 0.77664 Coding 0.99813 0.64165 0.78114 Phase 1 0.99625 0.63108 0.77269 Intron 0.99464 0.99940 0.99702 Phase 2 0.99813 0.63302 0.77471 Subgenic 0.99548 0.88068 0.93457 Coding 0.99688 0.63348 0.77468 Genic 0.99552 0.88378 0.93633 BP_Extractor for Sequence contig_37263 - ID 572 Forward for Sequence contig_37263 - ID 572 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4643 1 0 0 Non Coding 5933 6 7 6 UTR 15 221 3 14 Phase 0 4 498 0 0 Coding 17 1 1493 5 Phase 1 7 0 497 0 Intron 1 21 16 1012 Phase 2 7 0 0 498 Precision Recall F1 Precision Recall F1 Intergenic 0.99294 0.99978 0.99635 Non Coding 0.99698 0.99681 0.99689 UTR 0.90574 0.87352 0.88934 Phase 0 0.98810 0.99203 0.99006 Coding 0.98743 0.98483 0.98613 Phase 1 0.98611 0.98611 0.98611 Intron 0.98157 0.96381 0.97261 Phase 2 0.98810 0.98614 0.98712 Subgenic 0.98506 0.97623 0.98062 Coding 0.98743 0.98809 0.98776 Genic 0.97811 0.96701 0.97253 Reverse for Sequence contig_37263 - ID 572 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7463 0 0 0 Non Coding 7463 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_37312 - ID 573 Forward for Sequence contig_37312 - ID 573 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6720 0 0 0 Non Coding 6715 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99985 1.00000 0.99993 Non Coding 0.99911 1.00000 0.99955 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_37312 - ID 573 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6717 0 0 0 Non Coding 6712 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 4 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99940 1.00000 0.99970 Non Coding 0.99866 1.00000 0.99933 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_37431 - ID 574 Forward for Sequence contig_37431 - ID 574 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 26497 0 0 0 Non Coding 26511 0 0 0 UTR 14 0 0 0 Phase 0 3 0 0 0 Coding 7 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99921 1.00000 0.99960 Non Coding 0.99974 1.00000 0.99987 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_37431 - ID 574 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23637 0 0 0 Non Coding 25569 0 0 0 UTR 311 0 0 0 Phase 0 322 0 0 0 Coding 2296 0 0 0 Phase 1 320 0 0 0 Intron 274 0 0 0 Phase 2 307 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89136 1.00000 0.94256 Non Coding 0.96421 1.00000 0.98178 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_37514 - ID 575 Forward for Sequence contig_37514 - ID 575 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13709 0 0 0 Non Coding 13709 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_37514 - ID 575 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11009 2 0 0 Non Coding 12526 2 1 2 UTR 94 96 0 0 Phase 0 156 234 0 0 Coding 487 0 703 2 Phase 1 160 0 235 0 Intron 0 1 5 1310 Phase 2 159 0 0 234 Precision Recall F1 Precision Recall F1 Intergenic 0.94987 0.99982 0.97420 Non Coding 0.96346 0.99960 0.98120 UTR 0.96970 0.50526 0.66436 Phase 0 0.99153 0.60000 0.74760 Coding 0.99294 0.58977 0.74000 Phase 1 0.99576 0.59494 0.74485 Intron 0.99848 0.99544 0.99696 Phase 2 0.99153 0.59542 0.74404 Subgenic 0.99653 0.80263 0.88913 Coding 0.99294 0.59677 0.74549 Genic 0.99528 0.78169 0.87565 BP_Extractor for Sequence contig_37537 - ID 576 Forward for Sequence contig_37537 - ID 576 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9471 50 103 42 Non Coding 11159 340 381 387 UTR 261 351 35 10 Phase 0 602 1289 30 0 Coding 1969 16 4802 89 Phase 1 591 0 1249 22 Intron 43 5 40 649 Phase 2 604 31 0 1251 Precision Recall F1 Precision Recall F1 Intergenic 0.80645 0.97983 0.88473 Non Coding 0.86130 0.90968 0.88483 UTR 0.83175 0.53425 0.65060 Phase 0 0.77651 0.67100 0.71991 Coding 0.96426 0.69837 0.81005 Phase 1 0.75241 0.67078 0.70926 Intron 0.82152 0.88060 0.85003 Phase 2 0.75361 0.66331 0.70558 Subgenic 0.94471 0.71601 0.81462 Coding 0.76084 0.66837 0.71162 Genic 0.93702 0.70157 0.80238 Reverse for Sequence contig_37537 - ID 576 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14455 40 70 2 Non Coding 15282 212 234 240 UTR 79 292 5 8 Phase 0 29 646 0 0 Coding 238 7 2460 13 Phase 1 23 0 624 0 Intron 55 3 39 170 Phase 2 28 0 0 618 Precision Recall F1 Precision Recall F1 Intergenic 0.97491 0.99231 0.98353 Non Coding 0.99479 0.95704 0.97555 UTR 0.85380 0.76042 0.80441 Phase 0 0.75291 0.95704 0.84279 Coding 0.95571 0.90508 0.92971 Phase 1 0.72727 0.96445 0.82924 Intron 0.88083 0.63670 0.73913 Phase 2 0.72028 0.95666 0.82181 Subgenic 0.95049 0.88107 0.91446 Coding 0.73349 0.95935 0.83135 Genic 0.93985 0.86732 0.90213 BP_Extractor for Sequence contig_37880 - ID 577 Forward for Sequence contig_37880 - ID 577 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3596 2 0 0 Non Coding 4452 8 7 8 UTR 3 355 9 0 Phase 0 25 747 0 0 Coding 0 4 2241 71 Phase 1 25 0 747 0 Intron 0 0 14 496 Phase 2 25 0 0 747 Precision Recall F1 Precision Recall F1 Intergenic 0.99917 0.99944 0.99931 Non Coding 0.98343 0.99486 0.98911 UTR 0.98338 0.96730 0.97527 Phase 0 0.98940 0.96762 0.97839 Coding 0.98984 0.96762 0.97860 Phase 1 0.99072 0.96762 0.97903 Intron 0.87478 0.97255 0.92108 Phase 2 0.98940 0.96762 0.97839 Subgenic 0.96680 0.96851 0.96765 Coding 0.98984 0.96762 0.97860 Genic 0.96867 0.96837 0.96852 Reverse for Sequence contig_37880 - ID 577 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6791 0 0 0 Non Coding 6791 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_38034 - ID 578 Forward for Sequence contig_38034 - ID 578 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2348 0 0 0 Non Coding 4108 0 0 0 UTR 148 0 0 0 Phase 0 879 0 0 0 Coding 3340 0 0 0 Phase 1 887 0 0 0 Intron 908 0 0 0 Phase 2 870 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.34816 1.00000 0.51650 Non Coding 0.60913 1.00000 0.75710 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_38034 - ID 578 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6744 0 0 0 Non Coding 6744 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_38059 - ID 579 Forward for Sequence contig_38059 - ID 579 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8831 0 0 0 Non Coding 8841 0 0 0 UTR 8 0 0 0 Phase 0 5 0 0 0 Coding 11 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99785 1.00000 0.99893 Non Coding 0.99898 1.00000 0.99949 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_38059 - ID 579 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8850 0 0 0 Non Coding 8850 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_38088 - ID 580 Forward for Sequence contig_38088 - ID 580 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19839 0 0 0 Non Coding 20486 0 0 0 UTR 377 0 0 0 Phase 0 515 0 0 0 Coding 1654 0 0 0 Phase 1 540 0 0 0 Intron 188 0 0 0 Phase 2 517 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89940 1.00000 0.94704 Non Coding 0.92873 1.00000 0.96305 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_38088 - ID 580 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15793 2 26 2 Non Coding 16574 510 476 498 UTR 139 103 8 0 Phase 0 23 1295 0 0 Coding 81 0 5379 74 Phase 1 22 0 1329 0 Intron 0 0 2 449 Phase 2 24 0 0 1307 Precision Recall F1 Precision Recall F1 Intergenic 0.98626 0.99810 0.99215 Non Coding 0.99585 0.91782 0.95525 UTR 0.98095 0.41200 0.58028 Phase 0 0.71745 0.98255 0.82933 Coding 0.99335 0.97199 0.98256 Phase 1 0.73629 0.98372 0.84221 Intron 0.85524 0.99557 0.92008 Phase 2 0.72410 0.98197 0.83355 Subgenic 0.98114 0.97377 0.97744 Coding 0.72595 0.98275 0.83505 Genic 0.98114 0.95124 0.96596 BP_Extractor for Sequence contig_38120 - ID 581 Forward for Sequence contig_38120 - ID 581 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12144 0 0 0 Non Coding 12142 0 0 0 UTR 1 0 0 0 Phase 0 2 0 0 0 Coding 6 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99942 1.00000 0.99971 Non Coding 0.99926 1.00000 0.99963 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_38120 - ID 581 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12151 0 0 0 Non Coding 12151 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_38342 - ID 582 Forward for Sequence contig_38342 - ID 582 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5641 4 5 70 Non Coding 8972 83 88 89 UTR 42 265 20 6 Phase 0 24 1120 0 0 Coding 123 8 3556 44 Phase 1 15 0 1113 0 Intron 508 11 27 2305 Phase 2 16 0 1 1114 Precision Recall F1 Precision Recall F1 Intergenic 0.89341 0.98619 0.93751 Non Coding 0.99391 0.97184 0.98275 UTR 0.92014 0.79580 0.85346 Phase 0 0.93101 0.97902 0.95441 Coding 0.98559 0.95310 0.96907 Phase 1 0.92596 0.98670 0.95536 Intron 0.95052 0.80849 0.87377 Phase 2 0.92602 0.98497 0.95458 Subgenic 0.97149 0.89046 0.92921 Coding 0.92766 0.98354 0.95479 Genic 0.96915 0.88590 0.92566 Reverse for Sequence contig_38342 - ID 582 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12635 0 0 0 Non Coding 12635 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_38388 - ID 583 Forward for Sequence contig_38388 - ID 583 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14693 1 0 0 Non Coding 17290 7 5 7 UTR 5 193 1 6 Phase 0 16 636 0 0 Coding 16 0 1909 41 Phase 1 18 0 638 0 Intron 0 0 19 2390 Phase 2 21 0 0 636 Precision Recall F1 Precision Recall F1 Intergenic 0.99857 0.99993 0.99925 Non Coding 0.99683 0.99890 0.99786 UTR 0.99485 0.94146 0.96742 Phase 0 0.98911 0.97546 0.98224 Coding 0.98963 0.97101 0.98023 Phase 1 0.99222 0.97256 0.98229 Intron 0.98071 0.99211 0.98638 Phase 2 0.98911 0.96804 0.97846 Subgenic 0.98465 0.98263 0.98364 Coding 0.99015 0.97201 0.98100 Genic 0.98509 0.98079 0.98293 Reverse for Sequence contig_38388 - ID 583 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12944 4 4 157 Non Coding 16518 43 43 47 UTR 6 701 18 6 Phase 0 16 861 0 0 Coding 7 10 2643 75 Phase 1 15 0 861 0 Intron 14 19 47 2619 Phase 2 13 0 0 857 Precision Recall F1 Precision Recall F1 Intergenic 0.99792 0.98741 0.99264 Non Coding 0.99734 0.99201 0.99467 UTR 0.95504 0.95896 0.95700 Phase 0 0.95243 0.98176 0.96687 Coding 0.97456 0.96636 0.97044 Phase 1 0.95243 0.98288 0.96742 Intron 0.91670 0.97036 0.94276 Phase 2 0.94801 0.98506 0.96618 Subgenic 0.94487 0.96835 0.95647 Coding 0.95096 0.98323 0.96682 Genic 0.94606 0.96723 0.95653 BP_Extractor for Sequence contig_38597 - ID 584 Forward for Sequence contig_38597 - ID 584 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13402 0 0 0 Non Coding 13402 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_38597 - ID 584 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13402 0 0 0 Non Coding 13402 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_38777 - ID 585 Forward for Sequence contig_38777 - ID 585 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3838 2 0 0 Non Coding 4039 2 0 0 UTR 3 196 0 0 Phase 0 0 260 0 0 Coding 0 0 786 0 Phase 1 0 0 262 0 Intron 0 0 0 0 Phase 2 0 0 0 262 Precision Recall F1 Precision Recall F1 Intergenic 0.99922 0.99948 0.99935 Non Coding 1.00000 0.99951 0.99975 UTR 0.98990 0.98492 0.98741 Phase 0 0.99237 1.00000 0.99617 Coding 1.00000 1.00000 1.00000 Phase 1 1.00000 1.00000 1.00000 Intron NaN NaN NaN Phase 2 1.00000 1.00000 1.00000 Subgenic 1.00000 1.00000 1.00000 Coding 0.99746 1.00000 0.99873 Genic 0.99797 0.99695 0.99746 Reverse for Sequence contig_38777 - ID 585 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4825 0 0 0 Non Coding 4825 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_39211 - ID 586 Forward for Sequence contig_39211 - ID 586 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16489 5 1 62 Non Coding 21087 26 27 27 UTR 110 127 13 16 Phase 0 206 701 0 0 Coding 654 3 2149 82 Phase 1 195 0 700 0 Intron 1230 2 18 2910 Phase 2 202 0 0 700 Precision Recall F1 Precision Recall F1 Intergenic 0.89212 0.99589 0.94115 Non Coding 0.97220 0.99622 0.98406 UTR 0.92701 0.47744 0.63027 Phase 0 0.96424 0.77288 0.85802 Coding 0.98533 0.74411 0.84790 Phase 1 0.96286 0.78212 0.86313 Intron 0.94788 0.69952 0.80498 Phase 2 0.96286 0.77605 0.85942 Subgenic 0.96344 0.71779 0.82267 Coding 0.96332 0.77700 0.86018 Genic 0.96251 0.70905 0.81656 Reverse for Sequence contig_39211 - ID 586 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 23077 0 0 0 Non Coding 23733 0 0 0 UTR 93 0 0 0 Phase 0 46 0 0 0 Coding 218 0 0 0 Phase 1 42 0 0 0 Intron 483 0 0 0 Phase 2 50 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96674 1.00000 0.98309 Non Coding 0.99422 1.00000 0.99710 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_39276 - ID 587 Forward for Sequence contig_39276 - ID 587 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13674 9 220 158 Non Coding 19369 214 224 213 UTR 56 599 6 16 Phase 0 27 1736 0 1 Coding 135 31 5604 111 Phase 1 27 1 1726 0 Intron 69 8 23 4585 Phase 2 28 0 1 1737 Precision Recall F1 Precision Recall F1 Intergenic 0.98134 0.97248 0.97689 Non Coding 0.99578 0.96748 0.98143 UTR 0.92581 0.88479 0.90483 Phase 0 0.88980 0.98413 0.93459 Coding 0.95746 0.95290 0.95517 Phase 1 0.88467 0.98404 0.93171 Intron 0.94148 0.97866 0.95971 Phase 2 0.89031 0.98358 0.93462 Subgenic 0.95020 0.96432 0.95721 Coding 0.88826 0.98391 0.93364 Genic 0.94881 0.95953 0.95414 Reverse for Sequence contig_39276 - ID 587 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20576 15 79 16 Non Coding 22094 161 174 172 UTR 16 383 13 15 Phase 0 21 892 0 0 Coding 93 18 3061 65 Phase 1 15 0 879 0 Intron 126 26 6 796 Phase 2 15 0 0 881 Precision Recall F1 Precision Recall F1 Intergenic 0.98871 0.99468 0.99169 Non Coding 0.99770 0.97757 0.98753 UTR 0.86652 0.89696 0.88147 Phase 0 0.84710 0.97700 0.90743 Coding 0.96898 0.94563 0.95716 Phase 1 0.83476 0.98322 0.90293 Intron 0.89238 0.83438 0.86241 Phase 2 0.83666 0.98326 0.90405 Subgenic 0.95211 0.92031 0.93594 Coding 0.83951 0.98113 0.90481 Genic 0.94369 0.91815 0.93074 BP_Extractor for Sequence contig_39406 - ID 588 Forward for Sequence contig_39406 - ID 588 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6280 0 0 0 Non Coding 6465 9 7 8 UTR 6 69 7 0 Phase 0 5 216 0 0 Coding 42 1 667 0 Phase 1 5 0 218 0 Intron 6 0 1 77 Phase 2 6 0 0 217 Precision Recall F1 Precision Recall F1 Intergenic 0.99147 1.00000 0.99572 Non Coding 0.99753 0.99630 0.99692 UTR 0.98571 0.84146 0.90789 Phase 0 0.96000 0.97738 0.96861 Coding 0.98815 0.93944 0.96318 Phase 1 0.96889 0.97758 0.97321 Intron 1.00000 0.91667 0.95652 Phase 2 0.96444 0.97309 0.96875 Subgenic 0.98936 0.93703 0.96248 Coding 0.96444 0.97601 0.97019 Genic 0.98905 0.92808 0.95760 Reverse for Sequence contig_39406 - ID 588 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6829 0 0 0 Non Coding 6998 0 0 0 UTR 28 0 0 0 Phase 0 57 0 0 0 Coding 219 0 0 0 Phase 1 48 0 0 0 Intron 80 0 0 0 Phase 2 53 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95430 1.00000 0.97662 Non Coding 0.97792 1.00000 0.98884 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_39419 - ID 589 Forward for Sequence contig_39419 - ID 589 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8115 0 0 0 Non Coding 8115 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_39419 - ID 589 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6097 4 8 0 Non Coding 7765 13 8 14 UTR 5 71 2 0 Phase 0 6 99 0 0 Coding 20 0 324 0 Phase 1 3 0 104 0 Intron 0 0 2 1582 Phase 2 5 0 0 98 Precision Recall F1 Precision Recall F1 Intergenic 0.99592 0.99804 0.99697 Non Coding 0.99820 0.99551 0.99685 UTR 0.94667 0.91026 0.92810 Phase 0 0.88393 0.94286 0.91244 Coding 0.96429 0.94186 0.95294 Phase 1 0.92857 0.97196 0.94977 Intron 1.00000 0.99874 0.99937 Phase 2 0.87500 0.95146 0.91163 Subgenic 0.99374 0.98859 0.99116 Coding 0.89583 0.95556 0.92473 Genic 0.99197 0.98554 0.98875 BP_Extractor for Sequence contig_39436 - ID 590 Forward for Sequence contig_39436 - ID 590 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12319 0 0 0 Non Coding 12298 0 0 0 UTR 18 0 0 0 Phase 0 135 0 0 0 Coding 339 0 0 0 Phase 1 115 0 0 0 Intron 3 0 0 0 Phase 2 131 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97161 1.00000 0.98560 Non Coding 0.96995 1.00000 0.98475 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_39436 - ID 590 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12679 0 0 0 Non Coding 12679 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_39612 - ID 591 Forward for Sequence contig_39612 - ID 591 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13178 0 0 0 Non Coding 13185 0 0 0 UTR 8 0 0 0 Phase 0 3 0 0 0 Coding 11 0 0 0 Phase 1 5 0 0 0 Intron 1 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99848 1.00000 0.99924 Non Coding 0.99902 1.00000 0.99951 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_39612 - ID 591 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6847 12 197 5 Non Coding 8020 477 507 530 UTR 22 130 18 6 Phase 0 7 1244 0 0 Coding 11 3 4925 52 Phase 1 5 0 1214 0 Intron 6 8 23 933 Phase 2 3 0 0 1191 Precision Recall F1 Precision Recall F1 Intergenic 0.99434 0.96969 0.98186 Non Coding 0.99813 0.84120 0.91297 UTR 0.84967 0.73864 0.79027 Phase 0 0.72284 0.99440 0.83715 Coding 0.95390 0.98678 0.97006 Phase 1 0.70540 0.99590 0.82585 Intron 0.93675 0.96186 0.94914 Phase 2 0.69204 0.99749 0.81715 Subgenic 0.95113 0.98272 0.96667 Coding 0.70676 0.99591 0.82678 Genic 0.94867 0.97572 0.96200 BP_Extractor for Sequence contig_39682 - ID 592 Forward for Sequence contig_39682 - ID 592 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 19492 0 0 0 Non Coding 19776 0 0 0 UTR 31 0 0 0 Phase 0 83 0 0 0 Coding 314 0 0 0 Phase 1 84 0 0 0 Intron 192 0 0 0 Phase 2 86 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97319 1.00000 0.98641 Non Coding 0.98737 1.00000 0.99364 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_39682 - ID 592 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20029 0 0 0 Non Coding 20029 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_39697 - ID 593 Forward for Sequence contig_39697 - ID 593 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2771 0 0 0 Non Coding 2771 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_39697 - ID 593 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2771 0 0 0 Non Coding 2771 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_39710 - ID 594 Forward for Sequence contig_39710 - ID 594 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14542 0 0 0 Non Coding 14763 0 0 0 UTR 193 0 0 0 Phase 0 63 0 0 0 Coding 217 0 0 0 Phase 1 62 0 0 0 Intron 1 0 0 0 Phase 2 65 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97251 1.00000 0.98607 Non Coding 0.98729 1.00000 0.99361 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_39710 - ID 594 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11185 0 0 0 Non Coding 13118 0 0 0 UTR 111 165 0 8 Phase 0 149 468 0 0 Coding 724 4 1404 4 Phase 1 139 0 468 0 Intron 293 4 0 1051 Phase 2 143 0 0 468 Precision Recall F1 Precision Recall F1 Intergenic 0.90839 1.00000 0.95200 Non Coding 0.96819 1.00000 0.98384 UTR 0.95376 0.58099 0.72210 Phase 0 1.00000 0.75851 0.86267 Coding 1.00000 0.65730 0.79322 Phase 1 1.00000 0.77100 0.87070 Intron 0.98871 0.77967 0.87184 Phase 2 1.00000 0.76596 0.86747 Subgenic 0.99514 0.70465 0.82507 Coding 1.00000 0.76512 0.86693 Genic 0.99242 0.69533 0.81773 BP_Extractor for Sequence contig_39916 - ID 595 Forward for Sequence contig_39916 - ID 595 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9876 1 6 29 Non Coding 13271 81 93 86 UTR 110 92 15 86 Phase 0 288 580 0 0 Coding 1037 5 1956 33 Phase 1 285 0 568 0 Intron 1482 1 6 1375 Phase 2 283 0 0 575 Precision Recall F1 Precision Recall F1 Intergenic 0.78976 0.99637 0.88112 Non Coding 0.93941 0.98078 0.95965 UTR 0.92929 0.30363 0.45771 Phase 0 0.87746 0.66820 0.75867 Coding 0.98638 0.64533 0.78022 Phase 1 0.85930 0.66589 0.75033 Intron 0.90282 0.48010 0.62685 Phase 2 0.86989 0.67016 0.75708 Subgenic 0.95009 0.56506 0.70865 Coding 0.86889 0.66809 0.75537 Genic 0.94951 0.55227 0.69836 Reverse for Sequence contig_39916 - ID 595 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16106 0 0 0 Non Coding 16107 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 4 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99975 1.00000 0.99988 Non Coding 0.99981 1.00000 0.99991 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_40091 - ID 596 Forward for Sequence contig_40091 - ID 596 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5672 2 0 0 Non Coding 6048 1 1 0 UTR 3 235 1 4 Phase 0 3 296 0 0 Coding 6 0 889 9 Phase 1 2 0 296 0 Intron 0 0 1 126 Phase 2 4 0 0 297 Precision Recall F1 Precision Recall F1 Intergenic 0.99842 0.99965 0.99903 Non Coding 0.99851 0.99967 0.99909 UTR 0.99156 0.96708 0.97917 Phase 0 0.99663 0.98997 0.99329 Coding 0.99776 0.98341 0.99053 Phase 1 0.99663 0.99329 0.99496 Intron 0.90647 0.99213 0.94737 Phase 2 1.00000 0.98671 0.99331 Subgenic 0.98544 0.98448 0.98496 Coding 0.99776 0.98998 0.99385 Genic 0.98658 0.98116 0.98386 Reverse for Sequence contig_40091 - ID 596 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4815 4 0 0 Non Coding 6095 3 3 5 UTR 8 339 0 2 Phase 0 4 278 0 0 Coding 6 3 840 5 Phase 1 2 0 278 0 Intron 7 0 3 916 Phase 2 4 0 0 276 Precision Recall F1 Precision Recall F1 Intergenic 0.99566 0.99917 0.99741 Non Coding 0.99836 0.99820 0.99828 UTR 0.97977 0.97135 0.97554 Phase 0 0.98932 0.98582 0.98757 Coding 0.99644 0.98361 0.98998 Phase 1 0.98932 0.99286 0.99109 Intron 0.99242 0.98920 0.99081 Phase 2 0.98221 0.98571 0.98396 Subgenic 0.99434 0.98652 0.99041 Coding 0.98695 0.98812 0.98754 Genic 0.99195 0.98403 0.98797 BP_Extractor for Sequence contig_40100 - ID 597 Forward for Sequence contig_40100 - ID 597 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3911 0 0 0 Non Coding 3911 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_40100 - ID 597 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 732 1 1 68 Non Coding 3425 9 6 7 UTR 0 7 6 0 Phase 0 0 153 0 0 Coding 0 0 474 0 Phase 1 0 0 156 0 Intron 69 1 5 2547 Phase 2 0 0 0 155 Precision Recall F1 Precision Recall F1 Intergenic 0.91386 0.91272 0.91329 Non Coding 1.00000 0.99362 0.99680 UTR 0.77778 0.53846 0.63636 Phase 0 0.94444 1.00000 0.97143 Coding 0.97531 1.00000 0.98750 Phase 1 0.96296 1.00000 0.98113 Intron 0.97400 0.97140 0.97269 Phase 2 0.95679 1.00000 0.97792 Subgenic 0.97420 0.97578 0.97499 Coding 0.95473 1.00000 0.97684 Genic 0.97363 0.97395 0.97379 BP_Extractor for Sequence contig_40471 - ID 598 Forward for Sequence contig_40471 - ID 598 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15410 1 0 29 Non Coding 15700 6 7 5 UTR 22 71 1 0 Phase 0 14 127 0 0 Coding 59 5 398 0 Phase 1 9 0 126 0 Intron 22 0 0 115 Phase 2 11 0 0 128 Precision Recall F1 Precision Recall F1 Intergenic 0.99336 0.99806 0.99570 Non Coding 0.99784 0.99885 0.99835 UTR 0.92208 0.75532 0.83041 Phase 0 0.95489 0.90071 0.92701 Coding 0.99749 0.86147 0.92451 Phase 1 0.94737 0.93333 0.94030 Intron 0.79861 0.83942 0.81851 Phase 2 0.96241 0.92086 0.94118 Subgenic 0.94475 0.85643 0.89842 Coding 0.95489 0.91807 0.93612 Genic 0.94194 0.84271 0.88957 Reverse for Sequence contig_40471 - ID 598 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10605 7 102 40 Non Coding 13577 63 61 62 UTR 31 164 2 3 Phase 0 19 769 0 0 Coding 215 5 2363 14 Phase 1 22 0 771 0 Intron 7 4 29 2542 Phase 2 19 0 0 770 Precision Recall F1 Precision Recall F1 Intergenic 0.97670 0.98614 0.98140 Non Coding 0.99560 0.98649 0.99102 UTR 0.91111 0.82000 0.86316 Phase 0 0.92428 0.97589 0.94938 Coding 0.94671 0.90990 0.92794 Phase 1 0.92668 0.97226 0.94892 Intron 0.97807 0.98451 0.98128 Phase 2 0.92548 0.97592 0.95003 Subgenic 0.96271 0.94709 0.95484 Coding 0.92548 0.97468 0.94945 Genic 0.96095 0.94237 0.95157 BP_Extractor for Sequence contig_40512 - ID 599 Forward for Sequence contig_40512 - ID 599 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12093 0 0 0 Non Coding 12093 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_40512 - ID 599 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11192 2 0 0 Non Coding 11566 6 5 6 UTR 11 136 1 0 Phase 0 41 128 0 0 Coding 123 0 389 2 Phase 1 42 0 129 0 Intron 148 9 12 68 Phase 2 42 0 0 128 Precision Recall F1 Precision Recall F1 Intergenic 0.97542 0.99982 0.98747 Non Coding 0.98931 0.99853 0.99390 UTR 0.92517 0.91892 0.92203 Phase 0 0.95522 0.75740 0.84488 Coding 0.96766 0.75681 0.84934 Phase 1 0.96269 0.75439 0.84590 Intron 0.97143 0.28692 0.44300 Phase 2 0.95522 0.75294 0.84211 Subgenic 0.96822 0.60852 0.74734 Coding 0.95771 0.75490 0.84430 Genic 0.95800 0.65962 0.78129 BP_Extractor for Sequence contig_40525 - ID 600 Forward for Sequence contig_40525 - ID 600 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5360 2 0 0 Non Coding 7324 35 43 45 UTR 5 202 15 9 Phase 0 1 471 0 0 Coding 10 0 1485 3 Phase 1 3 0 463 0 Intron 0 0 18 1741 Phase 2 4 0 0 461 Precision Recall F1 Precision Recall F1 Intergenic 0.99721 0.99963 0.99842 Non Coding 0.99891 0.98348 0.99114 UTR 0.99020 0.87446 0.92874 Phase 0 0.93083 0.99788 0.96319 Coding 0.97826 0.99132 0.98475 Phase 1 0.91502 0.99356 0.95267 Intron 0.99315 0.98977 0.99146 Phase 2 0.91107 0.99140 0.94954 Subgenic 0.98624 0.99048 0.98836 Coding 0.91897 0.99430 0.95515 Genic 0.98647 0.98280 0.98463 Reverse for Sequence contig_40525 - ID 600 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7597 1 1 0 Non Coding 8166 26 47 44 UTR 10 190 8 9 Phase 0 1 189 7 0 Coding 7 0 657 12 Phase 1 6 0 171 10 Intron 21 12 10 315 Phase 2 1 11 0 171 Precision Recall F1 Precision Recall F1 Intergenic 0.99502 0.99974 0.99737 Non Coding 0.99902 0.98587 0.99240 UTR 0.93596 0.87558 0.90476 Phase 0 0.83628 0.95939 0.89362 Coding 0.97189 0.97189 0.97189 Phase 1 0.76000 0.91444 0.83010 Intron 0.93750 0.87989 0.90778 Phase 2 0.76000 0.93443 0.83824 Subgenic 0.96047 0.94004 0.95015 Coding 0.78550 0.93651 0.85438 Genic 0.95638 0.92886 0.94242 BP_Extractor for Sequence contig_40570 - ID 601 Forward for Sequence contig_40570 - ID 601 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4218 0 0 0 Non Coding 4278 0 0 0 UTR 43 0 0 0 Phase 0 202 0 0 0 Coding 624 0 0 0 Phase 1 203 0 0 0 Intron 0 0 0 0 Phase 2 202 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.86346 1.00000 0.92673 Non Coding 0.87574 1.00000 0.93376 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_40570 - ID 601 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4885 0 0 0 Non Coding 4885 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_40630 - ID 602 Forward for Sequence contig_40630 - ID 602 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13245 8 191 3 Non Coding 16732 221 221 238 UTR 30 126 1 10 Phase 0 32 455 0 0 Coding 136 11 1821 26 Phase 1 30 0 455 0 Intron 57 2 15 3175 Phase 2 35 0 0 438 Precision Recall F1 Precision Recall F1 Intergenic 0.98344 0.98498 0.98421 Non Coding 0.99424 0.96095 0.97731 UTR 0.85714 0.75449 0.80255 Phase 0 0.67308 0.93429 0.78246 Coding 0.89793 0.91324 0.90552 Phase 1 0.67308 0.93814 0.78381 Intron 0.98787 0.97722 0.98252 Phase 2 0.64793 0.92600 0.76240 Subgenic 0.95307 0.95289 0.95298 Coding 0.66469 0.93287 0.77627 Genic 0.95045 0.94677 0.94861 Reverse for Sequence contig_40630 - ID 602 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18571 0 0 0 Non Coding 18744 0 0 0 UTR 10 0 0 0 Phase 0 40 0 0 0 Coding 165 0 0 0 Phase 1 33 0 0 0 Intron 111 0 0 0 Phase 2 40 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98483 1.00000 0.99236 Non Coding 0.99401 1.00000 0.99699 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_40733 - ID 603 Forward for Sequence contig_40733 - ID 603 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4294 5 0 0 Non Coding 4757 5 4 4 UTR 52 383 6 0 Phase 0 6 375 0 0 Coding 38 2 1134 0 Phase 1 11 0 376 0 Intron 0 10 0 0 Phase 2 10 0 0 376 Precision Recall F1 Precision Recall F1 Intergenic 0.97947 0.99884 0.98906 Non Coding 0.99436 0.99727 0.99581 UTR 0.95750 0.86848 0.91082 Phase 0 0.98684 0.98425 0.98555 Coding 0.99474 0.96593 0.98012 Phase 1 0.98947 0.97158 0.98044 Intron NaN 0.00000 0.00000 Phase 2 0.98947 0.97409 0.98172 Subgenic 0.99474 0.95777 0.97590 Coding 0.98860 0.97660 0.98256 Genic 0.98506 0.93354 0.95861 Reverse for Sequence contig_40733 - ID 603 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5575 0 0 0 Non Coding 5645 0 0 0 UTR 64 0 0 0 Phase 0 95 0 0 0 Coding 285 0 0 0 Phase 1 92 0 0 0 Intron 0 0 0 0 Phase 2 92 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94109 1.00000 0.96965 Non Coding 0.95290 1.00000 0.97588 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_41220 - ID 604 Forward for Sequence contig_41220 - ID 604 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7873 5 8 40 Non Coding 9458 32 26 24 UTR 1 163 12 1 Phase 0 0 301 0 0 Coding 0 0 974 0 Phase 1 0 0 307 0 Intron 14 0 5 1361 Phase 2 0 0 0 309 Precision Recall F1 Precision Recall F1 Intergenic 0.99810 0.99331 0.99570 Non Coding 1.00000 0.99140 0.99568 UTR 0.97024 0.92090 0.94493 Phase 0 0.90390 1.00000 0.94953 Coding 0.97497 1.00000 0.98733 Phase 1 0.92192 1.00000 0.95937 Intron 0.97076 0.98623 0.97843 Phase 2 0.92793 1.00000 0.96262 Subgenic 0.97251 0.99193 0.98212 Coding 0.91792 1.00000 0.95720 Genic 0.97236 0.98696 0.97961 Reverse for Sequence contig_41220 - ID 604 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8785 2 48 0 Non Coding 9049 15 18 20 UTR 11 226 1 0 Phase 0 71 389 0 0 Coding 164 0 1163 12 Phase 1 56 0 386 0 Intron 4 0 0 41 Phase 2 69 0 0 384 Precision Recall F1 Precision Recall F1 Intergenic 0.98003 0.99434 0.98713 Non Coding 0.97880 0.99418 0.98643 UTR 0.99123 0.94958 0.96996 Phase 0 0.96287 0.84565 0.90046 Coding 0.95957 0.86856 0.91180 Phase 1 0.95545 0.87330 0.91253 Intron 0.77358 0.91111 0.83673 Phase 2 0.95050 0.84768 0.89615 Subgenic 0.95178 0.86994 0.90902 Coding 0.95627 0.85535 0.90300 Genic 0.95780 0.88163 0.91814 BP_Extractor for Sequence contig_41265 - ID 605 Forward for Sequence contig_41265 - ID 605 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3583 0 0 54 Non Coding 6259 4 5 7 UTR 8 64 8 4 Phase 0 4 143 0 0 Coding 19 0 432 5 Phase 1 4 0 142 0 Intron 660 0 1 1873 Phase 2 3 0 0 140 Precision Recall F1 Precision Recall F1 Intergenic 0.83911 0.98515 0.90629 Non Coding 0.99825 0.99745 0.99785 UTR 1.00000 0.76190 0.86486 Phase 0 0.97279 0.97279 0.97279 Coding 0.97959 0.94737 0.96321 Phase 1 0.96599 0.97260 0.96928 Intron 0.96746 0.73915 0.83803 Phase 2 0.95238 0.97902 0.96552 Subgenic 0.96971 0.77090 0.85895 Coding 0.96372 0.97477 0.96921 Genic 0.97050 0.77066 0.85911 Reverse for Sequence contig_41265 - ID 605 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6711 0 0 0 Non Coding 6711 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_41515 - ID 606 Forward for Sequence contig_41515 - ID 606 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8799 5 67 8 Non Coding 10197 98 73 92 UTR 8 196 6 13 Phase 0 1 182 0 0 Coding 0 0 763 1 Phase 1 0 0 207 0 Intron 104 0 4 1064 Phase 2 0 0 0 188 Precision Recall F1 Precision Recall F1 Intergenic 0.98743 0.99099 0.98921 Non Coding 0.99990 0.97486 0.98722 UTR 0.97512 0.87892 0.92453 Phase 0 0.65000 0.99454 0.78618 Coding 0.90833 0.99869 0.95137 Phase 1 0.73929 1.00000 0.85010 Intron 0.97974 0.90785 0.94243 Phase 2 0.67143 1.00000 0.80342 Subgenic 0.94860 0.94370 0.94614 Coding 0.68690 0.99827 0.81382 Genic 0.95110 0.93701 0.94400 Reverse for Sequence contig_41515 - ID 606 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9421 0 0 0 Non Coding 9812 2 1 1 UTR 16 209 1 0 Phase 0 9 397 0 0 Coding 27 0 1196 28 Phase 1 12 0 398 0 Intron 7 0 0 133 Phase 2 8 0 0 398 Precision Recall F1 Precision Recall F1 Intergenic 0.99472 1.00000 0.99735 Non Coding 0.99705 0.99959 0.99832 UTR 1.00000 0.92478 0.96092 Phase 0 0.99499 0.97783 0.98634 Coding 0.99916 0.95604 0.97712 Phase 1 0.99749 0.97073 0.98393 Intron 0.82609 0.95000 0.88372 Phase 2 0.99749 0.98030 0.98882 Subgenic 0.97865 0.95543 0.96690 Coding 0.99666 0.97627 0.98636 Genic 0.98149 0.95114 0.96608 BP_Extractor for Sequence contig_41575 - ID 607 Forward for Sequence contig_41575 - ID 607 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1093 11 0 0 Non Coding 2531 11 11 11 UTR 70 97 8 0 Phase 0 5 233 1 0 Coding 53 19 718 0 Phase 1 5 0 232 0 Intron 322 9 6 872 Phase 2 5 0 0 233 Precision Recall F1 Precision Recall F1 Intergenic 0.71066 0.99004 0.82740 Non Coding 0.99411 0.98713 0.99061 UTR 0.71324 0.55429 0.62379 Phase 0 0.95492 0.97490 0.96480 Coding 0.98087 0.90886 0.94350 Phase 1 0.95082 0.97890 0.96466 Intron 1.00000 0.72126 0.83806 Phase 2 0.95492 0.97899 0.96680 Subgenic 0.99127 0.79540 0.88260 Coding 0.95355 0.97759 0.96542 Genic 0.96954 0.77599 0.86203 Reverse for Sequence contig_41575 - ID 607 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3278 0 0 0 Non Coding 3278 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_41727 - ID 608 Forward for Sequence contig_41727 - ID 608 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8212 0 0 0 Non Coding 8212 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_41727 - ID 608 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8212 0 0 0 Non Coding 8212 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_41831 - ID 609 Forward for Sequence contig_41831 - ID 609 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6059 4 1 37 Non Coding 6439 39 48 42 UTR 14 177 11 2 Phase 0 5 365 0 0 Coding 9 0 1200 22 Phase 1 3 0 356 0 Intron 0 0 0 127 Phase 2 4 0 0 362 Precision Recall F1 Precision Recall F1 Intergenic 0.99622 0.99312 0.99466 Non Coding 0.99814 0.98036 0.98917 UTR 0.97790 0.86765 0.91948 Phase 0 0.90347 0.98649 0.94315 Coding 0.99010 0.97482 0.98240 Phase 1 0.88119 0.99164 0.93316 Intron 0.67553 1.00000 0.80635 Phase 2 0.89604 0.98907 0.94026 Subgenic 0.94786 0.97717 0.96229 Coding 0.89356 0.98904 0.93888 Genic 0.95130 0.96287 0.95705 Reverse for Sequence contig_41831 - ID 609 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5037 1 77 0 Non Coding 6184 23 28 30 UTR 11 143 9 10 Phase 0 47 401 0 22 Coding 31 1 1239 41 Phase 1 47 19 392 0 Intron 0 0 4 1059 Phase 2 56 0 23 391 Precision Recall F1 Precision Recall F1 Intergenic 0.99173 0.98475 0.98823 Non Coding 0.97632 0.98707 0.98167 UTR 0.98621 0.82659 0.89937 Phase 0 0.90519 0.85319 0.87842 Coding 0.93228 0.94436 0.93828 Phase 1 0.88488 0.85590 0.87014 Intron 0.95405 0.99624 0.97469 Phase 2 0.88262 0.83191 0.85652 Subgenic 0.94219 0.96758 0.95472 Coding 0.89090 0.84692 0.86835 Genic 0.94466 0.95801 0.95129 BP_Extractor for Sequence contig_41887 - ID 610 Forward for Sequence contig_41887 - ID 610 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12240 0 0 0 Non Coding 12239 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99992 1.00000 0.99996 Non Coding 0.99984 1.00000 0.99992 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_41887 - ID 610 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12241 0 0 0 Non Coding 12241 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_41930 - ID 611 Forward for Sequence contig_41930 - ID 611 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2247 0 0 0 Non Coding 2247 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_41930 - ID 611 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2247 0 0 0 Non Coding 2247 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_41936 - ID 612 Forward for Sequence contig_41936 - ID 612 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6523 0 0 0 Non Coding 6830 0 0 0 UTR 53 0 0 0 Phase 0 91 0 0 0 Coding 303 0 0 0 Phase 1 95 0 0 0 Intron 230 0 0 0 Phase 2 93 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91757 1.00000 0.95701 Non Coding 0.96075 1.00000 0.97998 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_41936 - ID 612 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4603 8 139 202 Non Coding 5605 63 77 57 UTR 9 83 0 0 Phase 0 14 426 0 0 Coding 16 11 1326 21 Phase 1 11 0 412 0 Intron 10 1 2 678 Phase 2 12 0 0 432 Precision Recall F1 Precision Recall F1 Intergenic 0.99245 0.92952 0.95996 Non Coding 0.99344 0.96605 0.97955 UTR 0.80583 0.90217 0.85128 Phase 0 0.87117 0.96818 0.91712 Coding 0.90389 0.96507 0.93347 Phase 1 0.84254 0.97400 0.90351 Intron 0.75250 0.98119 0.85176 Phase 2 0.88344 0.97297 0.92605 Subgenic 0.84628 0.97046 0.90413 Coding 0.86571 0.97169 0.91565 Genic 0.84460 0.96755 0.90190 BP_Extractor for Sequence contig_42100 - ID 613 Forward for Sequence contig_42100 - ID 613 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13125 0 0 0 Non Coding 13130 0 0 0 UTR 4 0 0 0 Phase 0 3 0 0 0 Coding 4 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99939 1.00000 0.99970 Non Coding 0.99977 1.00000 0.99989 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_42100 - ID 613 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11055 1 0 0 Non Coding 11463 24 22 23 UTR 8 208 6 0 Phase 0 7 525 0 0 Coding 8 0 1609 19 Phase 1 7 0 527 0 Intron 23 0 32 164 Phase 2 9 0 0 526 Precision Recall F1 Precision Recall F1 Intergenic 0.99648 0.99991 0.99819 Non Coding 0.99800 0.99402 0.99600 UTR 0.99522 0.93694 0.96520 Phase 0 0.95628 0.98684 0.97132 Coding 0.97693 0.98350 0.98020 Phase 1 0.95993 0.98689 0.97322 Intron 0.89617 0.74886 0.81592 Phase 2 0.95811 0.98318 0.97048 Subgenic 0.96885 0.95580 0.96228 Coding 0.95811 0.98563 0.97167 Genic 0.97155 0.95378 0.96259 BP_Extractor for Sequence contig_42104 - ID 614 Forward for Sequence contig_42104 - ID 614 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8733 5 62 38 Non Coding 9032 59 67 65 UTR 0 146 21 0 Phase 0 2 538 0 0 Coding 0 3 1700 14 Phase 1 2 0 530 0 Intron 0 0 8 98 Phase 2 1 0 0 532 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.98812 0.99402 Non Coding 0.99945 0.97929 0.98927 UTR 0.94805 0.87425 0.90966 Phase 0 0.90117 0.99630 0.94635 Coding 0.94919 0.99010 0.96921 Phase 1 0.88777 0.99624 0.93888 Intron 0.65333 0.92453 0.76562 Phase 2 0.89112 0.99812 0.94159 Subgenic 0.92633 0.98629 0.95537 Coding 0.89336 0.99688 0.94229 Genic 0.92792 0.97688 0.95177 Reverse for Sequence contig_42104 - ID 614 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8655 0 0 0 Non Coding 8990 2 6 4 UTR 10 137 0 2 Phase 0 4 607 0 0 Coding 8 6 1825 5 Phase 1 4 0 603 0 Intron 1 1 2 176 Phase 2 3 0 0 605 Precision Recall F1 Precision Recall F1 Intergenic 0.99781 1.00000 0.99890 Non Coding 0.99878 0.99867 0.99872 UTR 0.95139 0.91946 0.93515 Phase 0 0.99672 0.99345 0.99508 Coding 0.99891 0.98970 0.99428 Phase 1 0.99015 0.99341 0.99178 Intron 0.96175 0.97778 0.96970 Phase 2 0.99343 0.99507 0.99425 Subgenic 0.99552 0.98864 0.99207 Coding 0.99343 0.99398 0.99370 Genic 0.99257 0.98389 0.98821 BP_Extractor for Sequence contig_42142 - ID 615 Forward for Sequence contig_42142 - ID 615 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14021 2 46 105 Non Coding 15451 138 112 133 UTR 35 336 26 8 Phase 0 27 1104 0 0 Coding 132 10 3652 14 Phase 1 26 0 1130 0 Intron 100 8 2 755 Phase 2 22 0 0 1109 Precision Recall F1 Precision Recall F1 Intergenic 0.98131 0.98921 0.98524 Non Coding 0.99517 0.97581 0.98540 UTR 0.94382 0.82963 0.88305 Phase 0 0.88889 0.97613 0.93047 Coding 0.98014 0.95903 0.96947 Phase 1 0.90982 0.97751 0.94245 Intron 0.85601 0.87283 0.86434 Phase 2 0.89291 0.98055 0.93468 Subgenic 0.95638 0.94308 0.94968 Coding 0.89721 0.97806 0.93589 Genic 0.95548 0.93403 0.94463 Reverse for Sequence contig_42142 - ID 615 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16834 3 16 0 Non Coding 17792 48 56 60 UTR 42 107 17 13 Phase 0 10 430 0 0 Coding 14 1 1401 31 Phase 1 8 0 422 0 Intron 18 2 0 753 Phase 2 8 0 0 418 Precision Recall F1 Precision Recall F1 Intergenic 0.99562 0.99887 0.99725 Non Coding 0.99854 0.99087 0.99469 UTR 0.94690 0.59777 0.73288 Phase 0 0.89958 0.97727 0.93682 Coding 0.97699 0.96821 0.97258 Phase 1 0.88285 0.98140 0.92952 Intron 0.94479 0.97413 0.95924 Phase 2 0.87448 0.98122 0.92478 Subgenic 0.96549 0.97027 0.96787 Coding 0.88563 0.97994 0.93040 Genic 0.96459 0.94248 0.95341 BP_Extractor for Sequence contig_42319 - ID 616 Forward for Sequence contig_42319 - ID 616 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9975 1 1 46 Non Coding 10239 18 26 28 UTR 73 69 0 0 Phase 0 14 168 0 0 Coding 32 1 557 35 Phase 1 14 0 160 0 Intron 10 0 0 39 Phase 2 14 0 0 158 Precision Recall F1 Precision Recall F1 Intergenic 0.98860 0.99521 0.99190 Non Coding 0.99591 0.99302 0.99446 UTR 0.97183 0.48592 0.64789 Phase 0 0.90323 0.92308 0.91304 Coding 0.99821 0.89120 0.94167 Phase 1 0.86022 0.91954 0.88889 Intron 0.32500 0.79592 0.46154 Phase 2 0.84946 0.91860 0.88268 Subgenic 0.87906 0.88427 0.88166 Coding 0.87097 0.92045 0.89503 Genic 0.88785 0.81495 0.84984 Reverse for Sequence contig_42319 - ID 616 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7521 0 0 0 Non Coding 7708 1 1 1 UTR 0 120 2 0 Phase 0 0 1043 0 0 Coding 0 0 3129 0 Phase 1 0 0 1042 0 Intron 0 0 0 67 Phase 2 0 0 0 1043 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 0.99961 0.99981 UTR 1.00000 0.98361 0.99174 Phase 0 0.99904 1.00000 0.99952 Coding 0.99936 1.00000 0.99968 Phase 1 0.99904 1.00000 0.99952 Intron 1.00000 1.00000 1.00000 Phase 2 0.99904 1.00000 0.99952 Subgenic 0.99937 1.00000 0.99969 Coding 0.99904 1.00000 0.99952 Genic 0.99940 0.99940 0.99940 BP_Extractor for Sequence contig_42364 - ID 617 Forward for Sequence contig_42364 - ID 617 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25320 21 60 67 Non Coding 26594 63 72 70 UTR 103 407 8 14 Phase 0 356 701 10 0 Coding 1129 22 2244 11 Phase 1 360 0 691 9 Intron 194 11 7 360 Phase 2 349 9 0 694 Precision Recall F1 Precision Recall F1 Intergenic 0.94668 0.99419 0.96985 Non Coding 0.96150 0.99235 0.97668 UTR 0.88286 0.76504 0.81974 Phase 0 0.90686 0.65698 0.76196 Coding 0.96766 0.65884 0.78393 Phase 1 0.89392 0.65189 0.75396 Intron 0.79646 0.62937 0.70312 Phase 2 0.89780 0.65970 0.76055 Subgenic 0.93973 0.65460 0.77167 Coding 0.89953 0.65618 0.75882 Genic 0.93162 0.66763 0.77784 Reverse for Sequence contig_42364 - ID 617 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 25683 3 0 0 Non Coding 27750 5 1 4 UTR 45 256 1 0 Phase 0 353 377 0 0 Coding 1252 0 1138 5 Phase 1 362 0 381 0 Intron 707 0 7 881 Phase 2 367 0 0 378 Precision Recall F1 Precision Recall F1 Intergenic 0.92762 0.99988 0.96240 Non Coding 0.96247 0.99964 0.98070 UTR 0.98842 0.84768 0.91266 Phase 0 0.98691 0.51644 0.67806 Coding 0.99302 0.47516 0.64276 Phase 1 0.99738 0.51279 0.67733 Intron 0.99436 0.55235 0.71020 Phase 2 0.98953 0.50738 0.67081 Subgenic 0.99360 0.50602 0.67054 Coding 0.99127 0.51217 0.67539 Genic 0.99302 0.53006 0.69117 BP_Extractor for Sequence contig_42398 - ID 618 Forward for Sequence contig_42398 - ID 618 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6260 0 2 10 Non Coding 7572 3 5 4 UTR 0 73 2 29 Phase 0 0 493 0 0 Coding 0 0 1482 5 Phase 1 0 0 491 0 Intron 37 0 2 1158 Phase 2 0 0 0 492 Precision Recall F1 Precision Recall F1 Intergenic 0.99412 0.99809 0.99610 Non Coding 1.00000 0.99842 0.99921 UTR 1.00000 0.70192 0.82486 Phase 0 0.99395 1.00000 0.99697 Coding 0.99597 0.99664 0.99630 Phase 1 0.98992 1.00000 0.99493 Intron 0.96339 0.96742 0.96540 Phase 2 0.99194 1.00000 0.99595 Subgenic 0.98141 0.98361 0.98251 Coding 0.99194 1.00000 0.99595 Genic 0.98190 0.97310 0.97748 Reverse for Sequence contig_42398 - ID 618 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5672 3 2 0 Non Coding 7540 8 6 8 UTR 11 55 2 8 Phase 0 53 444 0 0 Coding 213 0 1345 8 Phase 1 54 0 446 0 Intron 1 0 7 1733 Phase 2 57 0 0 444 Precision Recall F1 Precision Recall F1 Intergenic 0.96185 0.99912 0.98013 Non Coding 0.97871 0.99709 0.98782 UTR 0.94828 0.72368 0.82090 Phase 0 0.98230 0.89336 0.93572 Coding 0.99189 0.85888 0.92060 Phase 1 0.98673 0.89200 0.93697 Intron 0.99085 0.99540 0.99312 Phase 2 0.98230 0.88623 0.93179 Subgenic 0.99130 0.93075 0.96007 Coding 0.98378 0.89052 0.93483 Genic 0.99052 0.92610 0.95723 BP_Extractor for Sequence contig_42668 - ID 619 Forward for Sequence contig_42668 - ID 619 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8005 4 37 16 Non Coding 9753 253 267 284 UTR 100 291 8 5 Phase 0 212 434 0 3 Coding 832 3 2006 27 Phase 1 198 1 420 0 Intron 12 4 13 1059 Phase 2 195 0 1 401 Precision Recall F1 Precision Recall F1 Intergenic 0.89451 0.99293 0.94116 Non Coding 0.94159 0.92384 0.93263 UTR 0.96358 0.72030 0.82436 Phase 0 0.63081 0.66872 0.64921 Coding 0.97190 0.69944 0.81346 Phase 1 0.61047 0.67851 0.64269 Intron 0.95664 0.97335 0.96492 Phase 2 0.58285 0.67169 0.62412 Subgenic 0.96657 0.77477 0.86011 Coding 0.60804 0.67292 0.63884 Genic 0.96631 0.76972 0.85689 Reverse for Sequence contig_42668 - ID 619 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11241 0 0 0 Non Coding 11522 0 0 0 UTR 85 0 0 0 Phase 0 303 0 0 0 Coding 1062 0 0 0 Phase 1 303 0 0 0 Intron 34 0 0 0 Phase 2 294 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90493 1.00000 0.95009 Non Coding 0.92755 1.00000 0.96241 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_42688 - ID 620 Forward for Sequence contig_42688 - ID 620 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2703 0 0 0 Non Coding 2703 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_42688 - ID 620 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2703 0 0 0 Non Coding 2703 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_42724 - ID 621 Forward for Sequence contig_42724 - ID 621 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5458 6 85 0 Non Coding 8006 109 104 109 UTR 6 190 21 30 Phase 0 10 296 2 0 Coding 3 5 1105 58 Phase 1 14 0 301 2 Intron 0 0 10 2287 Phase 2 13 2 0 296 Precision Recall F1 Precision Recall F1 Intergenic 0.99835 0.98360 0.99092 Non Coding 0.99540 0.96134 0.97807 UTR 0.94527 0.76923 0.84821 Phase 0 0.72727 0.96104 0.82797 Coding 0.90500 0.94364 0.92391 Phase 1 0.73956 0.94953 0.83149 Intron 0.96295 0.99565 0.97902 Phase 2 0.72727 0.95177 0.82451 Subgenic 0.94327 0.97809 0.96036 Coding 0.73137 0.95406 0.82800 Genic 0.94338 0.96420 0.95367 Reverse for Sequence contig_42724 - ID 621 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8256 0 0 0 Non Coding 8732 0 0 0 UTR 88 0 0 0 Phase 0 199 0 0 0 Coding 856 0 0 0 Phase 1 163 0 0 0 Intron 64 0 0 0 Phase 2 170 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89119 1.00000 0.94247 Non Coding 0.94257 1.00000 0.97044 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_42987 - ID 622 Forward for Sequence contig_42987 - ID 622 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4096 0 0 0 Non Coding 4098 0 0 0 UTR 3 0 0 0 Phase 0 2 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99902 1.00000 0.99951 Non Coding 0.99951 1.00000 0.99976 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_42987 - ID 622 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2167 3 3 43 Non Coding 3275 20 21 22 UTR 0 137 4 5 Phase 0 3 251 0 0 Coding 0 6 790 52 Phase 1 4 0 250 0 Intron 353 24 16 497 Phase 2 5 0 0 249 Precision Recall F1 Precision Recall F1 Intergenic 0.85992 0.97789 0.91512 Non Coding 0.99635 0.98113 0.98868 UTR 0.80588 0.93836 0.86709 Phase 0 0.92620 0.98819 0.95619 Coding 0.97171 0.93160 0.95123 Phase 1 0.92251 0.98425 0.95238 Intron 0.83250 0.55843 0.66846 Phase 2 0.91882 0.98031 0.94857 Subgenic 0.91277 0.74051 0.81766 Coding 0.92251 0.98425 0.95238 Genic 0.90127 0.75584 0.82217 BP_Extractor for Sequence contig_43235 - ID 623 Forward for Sequence contig_43235 - ID 623 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13723 0 0 0 Non Coding 13751 0 0 0 UTR 15 0 0 0 Phase 0 6 0 0 0 Coding 26 0 0 0 Phase 1 5 0 0 0 Intron 3 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99680 1.00000 0.99840 Non Coding 0.99884 1.00000 0.99942 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_43235 - ID 623 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7727 13 0 2 Non Coding 10404 153 134 131 UTR 13 411 21 27 Phase 0 9 958 0 0 Coding 0 4 3165 39 Phase 1 10 0 977 0 Intron 150 15 147 2033 Phase 2 11 0 0 980 Precision Recall F1 Precision Recall F1 Intergenic 0.97934 0.99806 0.98861 Non Coding 0.99712 0.96137 0.97892 UTR 0.92777 0.87076 0.89836 Phase 0 0.86229 0.99069 0.92204 Coding 0.94959 0.98660 0.96774 Phase 1 0.87939 0.98987 0.93136 Intron 0.96763 0.86695 0.91453 Phase 2 0.88209 0.98890 0.93245 Subgenic 0.95657 0.93607 0.94621 Coding 0.87459 0.98981 0.92864 Genic 0.95440 0.93095 0.94253 BP_Extractor for Sequence contig_43437 - ID 624 Forward for Sequence contig_43437 - ID 624 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1535 10 0 0 Non Coding 7939 24 22 21 UTR 19 391 13 0 Phase 0 0 547 0 0 Coding 9 0 1682 2 Phase 1 0 0 549 0 Intron 1 0 18 5974 Phase 2 2 0 0 550 Precision Recall F1 Precision Recall F1 Intergenic 0.98146 0.99353 0.98746 Non Coding 0.99975 0.99163 0.99567 UTR 0.97506 0.92435 0.94903 Phase 0 0.95797 1.00000 0.97853 Coding 0.98190 0.99350 0.98767 Phase 1 0.96147 1.00000 0.98036 Intron 0.99967 0.99683 0.99825 Phase 2 0.96322 0.99638 0.97952 Subgenic 0.99571 0.99610 0.99590 Coding 0.96089 0.99879 0.97947 Genic 0.99468 0.99235 0.99352 Reverse for Sequence contig_43437 - ID 624 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9654 0 0 0 Non Coding 9654 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_43547 - ID 625 Forward for Sequence contig_43547 - ID 625 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2997 0 6 0 Non Coding 6107 28 30 32 UTR 19 443 3 0 Phase 0 5 314 0 0 Coding 80 0 1006 3 Phase 1 8 0 312 0 Intron 28 0 11 2558 Phase 2 8 0 0 310 Precision Recall F1 Precision Recall F1 Intergenic 0.95935 0.99800 0.97829 Non Coding 0.99657 0.98548 0.99099 UTR 1.00000 0.95269 0.97577 Phase 0 0.91813 0.98433 0.95008 Coding 0.98051 0.92378 0.95130 Phase 1 0.91228 0.97500 0.94260 Intron 0.99883 0.98498 0.99186 Phase 2 0.90643 0.97484 0.93939 Subgenic 0.99359 0.96690 0.98006 Coding 0.91228 0.97806 0.94402 Genic 0.99429 0.96531 0.97959 Reverse for Sequence contig_43547 - ID 625 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7154 0 0 0 Non Coding 7154 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_43618 - ID 626 Forward for Sequence contig_43618 - ID 626 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9087 0 0 0 Non Coding 9087 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_43618 - ID 626 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9087 0 0 0 Non Coding 9087 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_43765 - ID 627 Forward for Sequence contig_43765 - ID 627 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4576 2 0 0 Non Coding 5189 3 3 4 UTR 5 237 0 3 Phase 0 0 183 0 0 Coding 7 0 550 0 Phase 1 0 0 183 0 Intron 1 1 8 357 Phase 2 0 0 0 182 Precision Recall F1 Precision Recall F1 Intergenic 0.99717 0.99956 0.99836 Non Coding 1.00000 0.99808 0.99904 UTR 0.98750 0.96735 0.97732 Phase 0 0.98387 1.00000 0.99187 Coding 0.98566 0.98743 0.98655 Phase 1 0.98387 1.00000 0.99187 Intron 0.99167 0.97275 0.98212 Phase 2 0.97849 1.00000 0.98913 Subgenic 0.98802 0.98160 0.98480 Coding 0.98208 1.00000 0.99096 Genic 0.98791 0.97861 0.98324 Reverse for Sequence contig_43765 - ID 627 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5747 0 0 0 Non Coding 5747 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_43912 - ID 628 Forward for Sequence contig_43912 - ID 628 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7640 0 0 0 Non Coding 7640 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_43912 - ID 628 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4057 7 0 0 Non Coding 6083 14 11 10 UTR 3 340 19 0 Phase 0 17 488 0 0 Coding 0 0 1487 51 Phase 1 17 0 491 0 Intron 6 0 0 1670 Phase 2 17 0 0 492 Precision Recall F1 Precision Recall F1 Intergenic 0.99779 0.99828 0.99803 Non Coding 0.99169 0.99428 0.99298 UTR 0.97983 0.93923 0.95910 Phase 0 0.97211 0.96634 0.96922 Coding 0.98738 0.96684 0.97700 Phase 1 0.97809 0.96654 0.97228 Intron 0.97037 0.99642 0.98322 Phase 2 0.98008 0.96660 0.97329 Subgenic 0.97831 0.98227 0.98028 Coding 0.97676 0.96649 0.97160 Genic 0.97846 0.97791 0.97818 BP_Extractor for Sequence contig_43976 - ID 629 Forward for Sequence contig_43976 - ID 629 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8096 6 2 323 Non Coding 10500 5 4 3 UTR 20 337 5 13 Phase 0 3 579 0 0 Coding 9 0 1742 5 Phase 1 3 0 580 0 Intron 6 1 3 1693 Phase 2 3 0 0 581 Precision Recall F1 Precision Recall F1 Intergenic 0.99570 0.96072 0.97790 Non Coding 0.99914 0.99886 0.99900 UTR 0.97965 0.89867 0.93741 Phase 0 0.99144 0.99485 0.99314 Coding 0.99429 0.99203 0.99316 Phase 1 0.99315 0.99485 0.99400 Intron 0.83235 0.99413 0.90607 Phase 2 0.99486 0.99486 0.99486 Subgenic 0.90729 0.99306 0.94824 Coding 0.99315 0.99485 0.99400 Genic 0.91332 0.98383 0.94726 Reverse for Sequence contig_43976 - ID 629 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10370 0 0 0 Non Coding 11196 0 0 0 UTR 105 0 0 0 Phase 0 341 0 0 0 Coding 1767 0 0 0 Phase 1 381 0 0 0 Intron 19 0 0 0 Phase 2 343 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84577 1.00000 0.91644 Non Coding 0.91314 1.00000 0.95460 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_43977 - ID 630 Forward for Sequence contig_43977 - ID 630 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6649 5 65 27 Non Coding 7449 116 126 118 UTR 63 144 17 4 Phase 0 27 1500 0 0 Coding 189 18 4719 29 Phase 1 34 0 1490 0 Intron 7 5 47 393 Phase 2 23 0 0 1498 Precision Recall F1 Precision Recall F1 Intergenic 0.96251 0.98562 0.97393 Non Coding 0.98885 0.95390 0.97106 UTR 0.83721 0.63158 0.72000 Phase 0 0.92822 0.98232 0.95450 Coding 0.97339 0.95237 0.96277 Phase 1 0.92203 0.97769 0.94904 Intron 0.86755 0.86947 0.86851 Phase 2 0.92698 0.98488 0.95505 Subgenic 0.96435 0.94544 0.95480 Coding 0.92574 0.98163 0.95287 Genic 0.96035 0.93274 0.94634 Reverse for Sequence contig_43977 - ID 630 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12354 0 0 0 Non Coding 12373 0 0 0 UTR 8 0 0 0 Phase 0 3 0 0 0 Coding 19 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99782 1.00000 0.99891 Non Coding 0.99935 1.00000 0.99968 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_44025 - ID 631 Forward for Sequence contig_44025 - ID 631 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7775 0 0 0 Non Coding 7842 0 0 0 UTR 10 0 0 0 Phase 0 133 0 0 0 Coding 433 0 0 0 Phase 1 133 0 0 0 Intron 25 0 0 0 Phase 2 135 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94322 1.00000 0.97078 Non Coding 0.95135 1.00000 0.97507 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_44025 - ID 631 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7718 0 0 0 Non Coding 7777 0 0 0 UTR 33 0 0 0 Phase 0 155 0 0 0 Coding 492 0 0 0 Phase 1 154 0 0 0 Intron 0 0 0 0 Phase 2 157 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93631 1.00000 0.96711 Non Coding 0.94347 1.00000 0.97091 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_44193 - ID 632 Forward for Sequence contig_44193 - ID 632 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9956 0 0 0 Non Coding 9956 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_44193 - ID 632 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6025 1 0 0 Non Coding 9123 66 51 68 UTR 9 284 5 37 Phase 0 8 202 2 0 Coding 13 1 784 27 Phase 1 9 0 216 0 Intron 71 22 18 2659 Phase 2 9 1 0 201 Precision Recall F1 Precision Recall F1 Intergenic 0.98480 0.99983 0.99226 Non Coding 0.99716 0.98012 0.98857 UTR 0.92208 0.84776 0.88336 Phase 0 0.75093 0.95283 0.83992 Coding 0.97150 0.95030 0.96078 Phase 1 0.80297 0.96000 0.87449 Intron 0.97650 0.95993 0.96814 Phase 2 0.74721 0.95261 0.83750 Subgenic 0.97535 0.95772 0.96646 Coding 0.76704 0.95525 0.85086 Genic 0.97108 0.94835 0.95958 BP_Extractor for Sequence contig_44240 - ID 633 Forward for Sequence contig_44240 - ID 633 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4918 0 0 0 Non Coding 5122 5 2 3 UTR 1 173 3 0 Phase 0 0 179 0 0 Coding 0 1 546 0 Phase 1 0 0 182 0 Intron 0 0 3 30 Phase 2 1 0 0 181 Precision Recall F1 Precision Recall F1 Intergenic 0.99980 1.00000 0.99990 Non Coding 0.99980 0.99805 0.99893 UTR 0.99425 0.97740 0.98575 Phase 0 0.97283 1.00000 0.98623 Coding 0.98913 0.99817 0.99363 Phase 1 0.98913 1.00000 0.99454 Intron 1.00000 0.90909 0.95238 Phase 2 0.98370 0.99451 0.98907 Subgenic 0.98969 0.99310 0.99139 Coding 0.98188 0.99816 0.98995 Genic 0.99074 0.98943 0.99009 Reverse for Sequence contig_44240 - ID 633 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3809 0 0 0 Non Coding 3999 0 0 0 UTR 71 0 0 0 Phase 0 558 0 0 0 Coding 1781 0 0 0 Phase 1 568 0 0 0 Intron 14 0 0 0 Phase 2 550 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.67119 1.00000 0.80325 Non Coding 0.70467 1.00000 0.82675 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_44328 - ID 634 Forward for Sequence contig_44328 - ID 634 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5528 0 0 0 Non Coding 5530 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99964 1.00000 0.99982 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 Reverse for Sequence contig_44328 - ID 634 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5437 0 0 0 Non Coding 5455 0 0 0 UTR 28 0 0 0 Phase 0 27 0 0 0 Coding 65 0 0 0 Phase 1 35 0 0 0 Intron 0 0 0 0 Phase 2 13 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98318 1.00000 0.99152 Non Coding 0.98644 1.00000 0.99317 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_44330 - ID 635 Forward for Sequence contig_44330 - ID 635 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21956 0 0 0 Non Coding 23164 0 0 0 UTR 70 0 0 0 Phase 0 268 0 0 0 Coding 924 0 0 0 Phase 1 255 0 0 0 Intron 1001 0 0 0 Phase 2 264 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91670 1.00000 0.95654 Non Coding 0.96714 1.00000 0.98330 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_44330 - ID 635 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17066 5 38 258 Non Coding 20869 73 72 74 UTR 49 1209 44 0 Phase 0 9 945 0 0 Coding 37 1 2941 24 Phase 1 8 0 946 0 Intron 36 34 31 2178 Phase 2 11 0 0 944 Precision Recall F1 Precision Recall F1 Intergenic 0.99290 0.98267 0.98776 Non Coding 0.99866 0.98961 0.99412 UTR 0.96797 0.92857 0.94786 Phase 0 0.92829 0.99057 0.95842 Coding 0.96300 0.97935 0.97111 Phase 1 0.92927 0.99161 0.95943 Intron 0.88537 0.95568 0.91918 Phase 2 0.92731 0.98848 0.95692 Subgenic 0.92836 0.96914 0.94831 Coding 0.92829 0.99022 0.95826 Genic 0.93568 0.96112 0.94823 BP_Extractor for Sequence contig_44437 - ID 636 Forward for Sequence contig_44437 - ID 636 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15513 0 0 0 Non Coding 15811 0 0 0 UTR 29 0 0 0 Phase 0 151 0 0 0 Coding 685 0 0 0 Phase 1 142 0 0 0 Intron 23 0 0 0 Phase 2 146 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95465 1.00000 0.97680 Non Coding 0.97298 1.00000 0.98631 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_44437 - ID 636 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16186 0 0 0 Non Coding 16221 0 0 0 UTR 11 0 0 0 Phase 0 11 0 0 0 Coding 34 0 0 0 Phase 1 9 0 0 0 Intron 19 0 0 0 Phase 2 9 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99606 1.00000 0.99803 Non Coding 0.99822 1.00000 0.99911 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_44444 - ID 637 Forward for Sequence contig_44444 - ID 637 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2152 0 0 0 Non Coding 2373 0 1 2 UTR 11 102 0 0 Phase 0 4 162 0 0 Coding 36 16 486 0 Phase 1 0 0 161 0 Intron 0 0 0 61 Phase 2 1 0 0 160 Precision Recall F1 Precision Recall F1 Intergenic 0.97863 1.00000 0.98920 Non Coding 0.99790 0.99874 0.99832 UTR 0.86441 0.90265 0.88312 Phase 0 1.00000 0.97590 0.98780 Coding 1.00000 0.90335 0.94922 Phase 1 0.99383 1.00000 0.99690 Intron 1.00000 1.00000 1.00000 Phase 2 0.98765 0.99379 0.99071 Subgenic 1.00000 0.91319 0.95462 Coding 0.99383 0.98975 0.99179 Genic 0.97594 0.91152 0.94263 Reverse for Sequence contig_44444 - ID 637 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2863 0 0 0 Non Coding 2862 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99965 1.00000 0.99983 Non Coding 0.99930 1.00000 0.99965 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_44555 - ID 638 Forward for Sequence contig_44555 - ID 638 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6369 0 0 0 Non Coding 6370 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99984 1.00000 0.99992 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 Reverse for Sequence contig_44555 - ID 638 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2531 4 0 0 Non Coding 4623 18 16 25 UTR 0 119 1 17 Phase 0 6 559 0 0 Coding 1 3 1695 18 Phase 1 5 0 561 0 Intron 0 2 35 1944 Phase 2 5 0 0 552 Precision Recall F1 Precision Recall F1 Intergenic 0.99961 0.99842 0.99901 Non Coding 0.99655 0.98740 0.99195 UTR 0.92969 0.86861 0.89811 Phase 0 0.96880 0.98938 0.97898 Coding 0.97920 0.98719 0.98318 Phase 1 0.97227 0.99117 0.98163 Intron 0.98231 0.98132 0.98182 Phase 2 0.95667 0.99102 0.97354 Subgenic 0.98086 0.98405 0.98245 Coding 0.96592 0.99052 0.97806 Genic 0.97916 0.97992 0.97954 BP_Extractor for Sequence contig_44559 - ID 639 Forward for Sequence contig_44559 - ID 639 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2707 1 0 8 Non Coding 4244 3 1 2 UTR 2 132 0 2 Phase 0 2 347 0 0 Coding 3 7 1044 1 Phase 1 2 0 349 0 Intron 6 2 6 1379 Phase 2 2 0 0 348 Precision Recall F1 Precision Recall F1 Intergenic 0.99595 0.99669 0.99632 Non Coding 0.99859 0.99859 0.99859 UTR 0.92958 0.97059 0.94964 Phase 0 0.99143 0.99427 0.99285 Coding 0.99429 0.98957 0.99192 Phase 1 0.99714 0.99430 0.99572 Intron 0.99209 0.98995 0.99102 Phase 2 0.99429 0.99429 0.99429 Subgenic 0.99303 0.98979 0.99141 Coding 0.99429 0.99429 0.99429 Genic 0.98954 0.98878 0.98916 Reverse for Sequence contig_44559 - ID 639 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5017 0 0 0 Non Coding 5083 0 0 0 UTR 20 0 0 0 Phase 0 72 0 0 0 Coding 250 0 0 0 Phase 1 72 0 0 0 Intron 13 0 0 0 Phase 2 73 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94660 1.00000 0.97257 Non Coding 0.95906 1.00000 0.97910 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_44560 - ID 640 Forward for Sequence contig_44560 - ID 640 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9723 0 0 0 Non Coding 9982 0 0 0 UTR 123 0 0 0 Phase 0 157 0 0 0 Coding 538 0 0 0 Phase 1 159 0 0 0 Intron 69 0 0 0 Phase 2 155 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93016 1.00000 0.96382 Non Coding 0.95494 1.00000 0.97695 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_44560 - ID 640 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9842 0 0 0 Non Coding 9932 0 0 0 UTR 65 0 0 0 Phase 0 172 0 0 0 Coding 536 0 0 0 Phase 1 174 0 0 0 Intron 10 0 0 0 Phase 2 175 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94155 1.00000 0.96989 Non Coding 0.95016 1.00000 0.97444 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_44783 - ID 641 Forward for Sequence contig_44783 - ID 641 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5473 0 0 0 Non Coding 5473 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_44783 - ID 641 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5473 0 0 0 Non Coding 5473 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_45063 - ID 642 Forward for Sequence contig_45063 - ID 642 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10928 0 0 0 Non Coding 10962 0 0 0 UTR 54 0 0 0 Phase 0 116 0 0 0 Coding 312 0 0 0 Phase 1 107 0 0 0 Intron 0 0 0 0 Phase 2 109 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96759 1.00000 0.98353 Non Coding 0.97060 1.00000 0.98508 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_45063 - ID 642 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11289 0 0 0 Non Coding 11285 0 0 0 UTR 3 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99956 1.00000 0.99978 Non Coding 0.99920 1.00000 0.99960 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_45065 - ID 643 Forward for Sequence contig_45065 - ID 643 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6196 3 27 2 Non Coding 7548 171 177 187 UTR 5 110 14 11 Phase 0 3 697 1 0 Coding 3 1 2543 42 Phase 1 5 0 690 0 Intron 0 0 20 1187 Phase 2 4 0 0 681 Precision Recall F1 Precision Recall F1 Intergenic 0.99871 0.99486 0.99678 Non Coding 0.99841 0.93381 0.96503 UTR 0.96491 0.78571 0.86614 Phase 0 0.80300 0.99429 0.88846 Coding 0.97657 0.98223 0.97940 Phase 1 0.79493 0.99281 0.88292 Intron 0.95572 0.98343 0.96938 Phase 2 0.78456 0.99416 0.87701 Subgenic 0.96984 0.98261 0.97618 Coding 0.79416 0.99375 0.88282 Genic 0.96970 0.97561 0.97264 Reverse for Sequence contig_45065 - ID 643 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7650 0 2 0 Non Coding 9443 7 3 6 UTR 0 40 2 2 Phase 0 34 158 0 42 Coding 98 2 614 3 Phase 1 33 42 161 0 Intron 5 0 3 1743 Phase 2 33 0 43 159 Precision Recall F1 Precision Recall F1 Intergenic 0.98671 0.99974 0.99318 Non Coding 0.98952 0.99831 0.99390 UTR 0.95238 0.90909 0.93023 Phase 0 0.76329 0.67521 0.71655 Coding 0.98873 0.85635 0.91779 Phase 1 0.77778 0.68220 0.72686 Intron 0.99714 0.99543 0.99628 Phase 2 0.76812 0.67660 0.71946 Subgenic 0.99493 0.95502 0.97457 Coding 0.76973 0.67801 0.72097 Genic 0.99419 0.95422 0.97380 BP_Extractor for Sequence contig_45326 - ID 644 Forward for Sequence contig_45326 - ID 644 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3491 0 0 0 Non Coding 3491 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_45326 - ID 644 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3489 0 0 0 Non Coding 3487 0 0 0 UTR 1 0 0 0 Phase 0 2 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99943 1.00000 0.99971 Non Coding 0.99885 1.00000 0.99943 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_45413 - ID 645 Forward for Sequence contig_45413 - ID 645 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4302 0 0 0 Non Coding 4423 0 0 0 UTR 22 0 0 0 Phase 0 42 0 0 0 Coding 137 0 0 0 Phase 1 41 0 0 0 Intron 87 0 0 0 Phase 2 42 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94591 1.00000 0.97220 Non Coding 0.97252 1.00000 0.98607 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_45413 - ID 645 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4548 0 0 0 Non Coding 4548 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_45503 - ID 646 Forward for Sequence contig_45503 - ID 646 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4265 0 0 0 Non Coding 4265 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_45503 - ID 646 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4265 0 0 0 Non Coding 4265 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_45533 - ID 647 Forward for Sequence contig_45533 - ID 647 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10848 0 0 0 Non Coding 10848 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_45533 - ID 647 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1310 1 11 89 Non Coding 5211 301 339 325 UTR 12 71 21 7 Phase 0 9 1566 0 4 Coding 1 3 5566 68 Phase 1 12 3 1528 0 Intron 3 1 12 3672 Phase 2 6 0 3 1541 Precision Recall F1 Precision Recall F1 Intergenic 0.98793 0.92842 0.95725 Non Coding 0.99485 0.84375 0.91309 UTR 0.93421 0.63964 0.75936 Phase 0 0.83743 0.99177 0.90809 Coding 0.99216 0.98723 0.98969 Phase 1 0.81711 0.99028 0.89540 Intron 0.95725 0.99566 0.97608 Phase 2 0.82406 0.99419 0.90117 Subgenic 0.97798 0.99056 0.98423 Coding 0.82620 0.99208 0.90158 Genic 0.97763 0.98644 0.98201 BP_Extractor for Sequence contig_45653 - ID 648 Forward for Sequence contig_45653 - ID 648 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10498 9 64 170 Non Coding 12180 159 159 164 UTR 64 120 11 3 Phase 0 27 241 0 0 Coding 110 2 1119 6 Phase 1 19 0 241 0 Intron 189 0 6 1076 Phase 2 21 0 0 236 Precision Recall F1 Precision Recall F1 Intergenic 0.96658 0.97738 0.97195 Non Coding 0.99453 0.96193 0.97796 UTR 0.91603 0.60606 0.72948 Phase 0 0.60250 0.89925 0.72156 Coding 0.93250 0.90461 0.91834 Phase 1 0.60250 0.92692 0.73030 Intron 0.85737 0.84658 0.85194 Phase 2 0.59000 0.91829 0.71842 Subgenic 0.89409 0.87520 0.88455 Coding 0.59833 0.91465 0.72343 Genic 0.89520 0.85551 0.87491 Reverse for Sequence contig_45653 - ID 648 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13446 0 0 0 Non Coding 13446 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99993 1.00000 0.99996 Non Coding 0.99993 1.00000 0.99996 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_45768 - ID 649 Forward for Sequence contig_45768 - ID 649 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4721 16 100 24 Non Coding 6503 200 206 220 UTR 33 157 10 15 Phase 0 27 810 0 0 Coding 74 1 2906 62 Phase 1 29 0 804 0 Intron 21 0 14 1457 Phase 2 22 0 0 790 Precision Recall F1 Precision Recall F1 Intergenic 0.97360 0.97120 0.97240 Non Coding 0.98815 0.91219 0.94865 UTR 0.90230 0.73023 0.80720 Phase 0 0.80198 0.96774 0.87710 Coding 0.95908 0.95498 0.95702 Phase 1 0.79604 0.96519 0.87249 Intron 0.93517 0.97654 0.95541 Phase 2 0.78218 0.97291 0.86718 Subgenic 0.95096 0.96207 0.95648 Coding 0.79340 0.96857 0.87228 Genic 0.94918 0.95158 0.95038 Reverse for Sequence contig_45768 - ID 649 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8886 1 33 8 Non Coding 9113 34 32 32 UTR 7 81 12 3 Phase 0 2 130 0 0 Coding 6 3 441 0 Phase 1 2 0 132 0 Intron 0 0 6 124 Phase 2 2 0 0 132 Precision Recall F1 Precision Recall F1 Intergenic 0.99854 0.99530 0.99691 Non Coding 0.99934 0.98936 0.99433 UTR 0.95294 0.78641 0.86170 Phase 0 0.79268 0.98485 0.87838 Coding 0.89634 0.98000 0.93631 Phase 1 0.80488 0.98507 0.88591 Intron 0.91852 0.95385 0.93585 Phase 2 0.80488 0.98507 0.88591 Subgenic 0.90112 0.97414 0.93621 Coding 0.80081 0.98500 0.88341 Genic 0.90730 0.94583 0.92616 BP_Extractor for Sequence contig_45946 - ID 650 Forward for Sequence contig_45946 - ID 650 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10107 0 0 0 Non Coding 10115 0 0 0 UTR 6 0 0 0 Phase 0 4 0 0 0 Coding 23 0 0 0 Phase 1 7 0 0 0 Intron 0 0 0 0 Phase 2 10 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99714 1.00000 0.99857 Non Coding 0.99793 1.00000 0.99896 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_45946 - ID 650 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3863 5 33 49 Non Coding 7424 105 101 103 UTR 22 113 26 4 Phase 0 43 759 0 0 Coding 37 11 2526 40 Phase 1 32 0 763 0 Intron 95 25 7 3280 Phase 2 45 0 0 761 Precision Recall F1 Precision Recall F1 Intergenic 0.96166 0.97797 0.96975 Non Coding 0.98409 0.96004 0.97192 UTR 0.73377 0.68485 0.70846 Phase 0 0.87847 0.94638 0.91116 Coding 0.97454 0.96634 0.97042 Phase 1 0.88310 0.95975 0.91983 Intron 0.97243 0.96272 0.96755 Phase 2 0.88079 0.94417 0.91138 Subgenic 0.97334 0.96429 0.96880 Coding 0.88079 0.95006 0.91411 Genic 0.96731 0.95684 0.96205 BP_Extractor for Sequence contig_46034 - ID 651 Forward for Sequence contig_46034 - ID 651 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7008 0 0 0 Non Coding 7008 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_46034 - ID 651 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6763 0 0 0 Non Coding 6889 0 0 0 UTR 33 0 0 0 Phase 0 41 0 0 0 Coding 195 0 0 0 Phase 1 36 0 0 0 Intron 17 0 0 0 Phase 2 42 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96504 1.00000 0.98221 Non Coding 0.98302 1.00000 0.99144 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_46278 - ID 652 Forward for Sequence contig_46278 - ID 652 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2207 0 0 0 Non Coding 2336 1 2 3 UTR 29 56 1 0 Phase 0 31 276 0 0 Coding 126 0 830 0 Phase 1 27 0 275 0 Intron 0 0 0 0 Phase 2 24 0 0 274 Precision Recall F1 Precision Recall F1 Intergenic 0.93438 1.00000 0.96608 Non Coding 0.96609 0.99744 0.98151 UTR 1.00000 0.65116 0.78873 Phase 0 0.99639 0.89902 0.94521 Coding 0.99880 0.86820 0.92893 Phase 1 0.99278 0.91060 0.94991 Intron NaN NaN NaN Phase 2 0.98917 0.91946 0.95304 Subgenic 0.99880 0.86820 0.92893 Coding 0.99278 0.90959 0.94937 Genic 0.99887 0.85029 0.91861 Reverse for Sequence contig_46278 - ID 652 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3249 0 0 0 Non Coding 3249 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_46368 - ID 653 Forward for Sequence contig_46368 - ID 653 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15801 0 0 0 Non Coding 16011 0 0 0 UTR 11 0 0 0 Phase 0 22 0 0 0 Coding 273 0 0 0 Phase 1 26 0 0 0 Intron 6 0 0 0 Phase 2 32 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98198 1.00000 0.99091 Non Coding 0.99503 1.00000 0.99751 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_46368 - ID 653 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12109 1 33 11 Non Coding 13538 54 53 56 UTR 238 87 5 14 Phase 0 77 720 0 0 Coding 306 0 2279 17 Phase 1 77 0 721 0 Intron 163 0 5 823 Phase 2 77 0 0 718 Precision Recall F1 Precision Recall F1 Intergenic 0.94483 0.99630 0.96988 Non Coding 0.98322 0.98810 0.98566 UTR 0.98864 0.25291 0.40278 Phase 0 0.93023 0.90339 0.91661 Coding 0.98148 0.87586 0.92567 Phase 1 0.93152 0.90351 0.91730 Intron 0.95145 0.83047 0.88685 Phase 2 0.92765 0.90314 0.91523 Subgenic 0.97333 0.86335 0.91504 Coding 0.92980 0.90335 0.91638 Genic 0.97374 0.81001 0.88436 BP_Extractor for Sequence contig_46442 - ID 654 Forward for Sequence contig_46442 - ID 654 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3843 2 1 44 Non Coding 6872 37 37 37 UTR 12 0 6 10 Phase 0 8 385 0 0 Coding 27 0 1246 35 Phase 1 10 0 385 0 Intron 1074 4 13 1847 Phase 2 8 0 0 385 Precision Recall F1 Precision Recall F1 Intergenic 0.77542 0.98792 0.86887 Non Coding 0.99623 0.98410 0.99013 UTR 0.00000 0.00000 0.00000 Phase 0 0.91232 0.97964 0.94479 Coding 0.98420 0.95260 0.96814 Phase 1 0.91232 0.97468 0.94247 Intron 0.95403 0.62866 0.75790 Phase 2 0.91232 0.97964 0.94479 Subgenic 0.96596 0.72845 0.83056 Coding 0.91232 0.97798 0.94401 Genic 0.96415 0.72368 0.82678 Reverse for Sequence contig_46442 - ID 654 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8164 0 0 0 Non Coding 8164 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_46722 - ID 655 Forward for Sequence contig_46722 - ID 655 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5692 2 0 0 Non Coding 6689 8 7 7 UTR 30 253 6 0 Phase 0 28 636 0 0 Coding 135 11 1915 5 Phase 1 26 0 637 0 Intron 10 2 11 622 Phase 2 19 0 0 637 Precision Recall F1 Precision Recall F1 Intergenic 0.97017 0.99965 0.98469 Non Coding 0.98920 0.99672 0.99295 UTR 0.94403 0.87543 0.90844 Phase 0 0.98758 0.95783 0.97248 Coding 0.99120 0.92691 0.95798 Phase 1 0.98913 0.96078 0.97475 Intron 0.99203 0.96434 0.97799 Phase 2 0.98913 0.97104 0.98000 Subgenic 0.99140 0.93582 0.96281 Coding 0.98861 0.96319 0.97573 Genic 0.98691 0.93000 0.95761 Reverse for Sequence contig_46722 - ID 655 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6855 0 0 0 Non Coding 6960 0 0 0 UTR 20 0 0 0 Phase 0 586 0 0 0 Coding 1809 0 0 0 Phase 1 584 0 0 0 Intron 10 0 0 0 Phase 2 564 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.78847 1.00000 0.88173 Non Coding 0.80055 1.00000 0.88923 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_46729 - ID 656 Forward for Sequence contig_46729 - ID 656 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2522 0 0 0 Non Coding 2634 0 0 0 UTR 14 50 0 0 Phase 0 20 212 0 0 Coding 94 3 636 0 Phase 1 17 0 212 0 Intron 3 0 0 0 Phase 2 15 0 0 212 Precision Recall F1 Precision Recall F1 Intergenic 0.95784 1.00000 0.97847 Non Coding 0.98064 1.00000 0.99023 UTR 0.94340 0.78125 0.85470 Phase 0 1.00000 0.91379 0.95495 Coding 1.00000 0.86767 0.92915 Phase 1 1.00000 0.92576 0.96145 Intron NaN 0.00000 0.00000 Phase 2 1.00000 0.93392 0.96583 Subgenic 1.00000 0.86413 0.92711 Coding 1.00000 0.92442 0.96073 Genic 0.99565 0.85750 0.92142 Reverse for Sequence contig_46729 - ID 656 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3278 0 0 0 Non Coding 3285 0 0 0 UTR 6 0 0 0 Phase 0 12 0 0 0 Coding 38 0 0 0 Phase 1 13 0 0 0 Intron 0 0 0 0 Phase 2 12 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98675 1.00000 0.99333 Non Coding 0.98886 1.00000 0.99440 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_46869 - ID 657 Forward for Sequence contig_46869 - ID 657 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13599 0 0 0 Non Coding 14961 7 8 7 UTR 58 73 10 4 Phase 0 178 419 0 0 Coding 570 1 1255 0 Phase 1 175 0 418 0 Intron 134 2 13 1054 Phase 2 181 0 0 419 Precision Recall F1 Precision Recall F1 Intergenic 0.94694 1.00000 0.97275 Non Coding 0.96554 0.99853 0.98176 UTR 0.96053 0.50345 0.66063 Phase 0 0.98357 0.70184 0.81916 Coding 0.98200 0.68729 0.80863 Phase 1 0.98122 0.70489 0.82041 Intron 0.99622 0.87614 0.93233 Phase 2 0.98357 0.69833 0.81676 Subgenic 0.98844 0.76230 0.86076 Coding 0.98279 0.70168 0.81877 Genic 0.98756 0.75047 0.85285 Reverse for Sequence contig_46869 - ID 657 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12831 3 0 0 Non Coding 14754 4 2 2 UTR 142 77 1 0 Phase 0 559 101 0 0 Coding 2575 2 311 0 Phase 1 586 0 103 0 Intron 828 0 3 0 Phase 2 559 0 0 103 Precision Recall F1 Precision Recall F1 Intergenic 0.78352 0.99977 0.87853 Non Coding 0.89646 0.99946 0.94516 UTR 0.93902 0.35000 0.50993 Phase 0 0.96190 0.15303 0.26405 Coding 0.98730 0.10769 0.19419 Phase 1 0.98095 0.14949 0.25945 Intron NaN 0.00000 0.00000 Phase 2 0.98095 0.15559 0.26858 Subgenic 0.98730 0.08362 0.15419 Coding 0.97460 0.15266 0.26397 Genic 0.97733 0.09850 0.17897 BP_Extractor for Sequence contig_47344 - ID 658 Forward for Sequence contig_47344 - ID 658 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2136 0 0 0 Non Coding 2606 0 0 0 UTR 16 0 0 0 Phase 0 99 0 0 0 Coding 342 0 0 0 Phase 1 107 0 0 0 Intron 418 0 0 0 Phase 2 100 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.73352 1.00000 0.84628 Non Coding 0.89492 1.00000 0.94455 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_47344 - ID 658 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2912 0 0 0 Non Coding 2912 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_47405 - ID 659 Forward for Sequence contig_47405 - ID 659 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4719 4 3 0 Non Coding 5495 98 100 112 UTR 20 393 2 0 Phase 0 6 291 0 0 Coding 9 1 1136 18 Phase 1 7 0 289 0 Intron 0 0 26 351 Phase 2 7 0 0 277 Precision Recall F1 Precision Recall F1 Intergenic 0.99389 0.99852 0.99620 Non Coding 0.99637 0.94660 0.97085 UTR 0.98744 0.94699 0.96679 Phase 0 0.74807 0.97980 0.84840 Coding 0.97344 0.97595 0.97469 Phase 1 0.74293 0.97635 0.84380 Intron 0.95122 0.93103 0.94102 Phase 2 0.71208 0.97535 0.82318 Subgenic 0.96810 0.96496 0.96653 Coding 0.73436 0.97719 0.83855 Genic 0.97208 0.96115 0.96658 Reverse for Sequence contig_47405 - ID 659 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6682 0 0 0 Non Coding 6682 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_47443 - ID 660 Forward for Sequence contig_47443 - ID 660 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8888 0 0 0 Non Coding 8888 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_47443 - ID 660 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8096 0 0 0 Non Coding 8269 0 0 0 UTR 160 0 0 0 Phase 0 207 0 0 0 Coding 632 0 0 0 Phase 1 206 0 0 0 Intron 0 0 0 0 Phase 2 206 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91089 1.00000 0.95337 Non Coding 0.93036 1.00000 0.96392 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_47508 - ID 661 Forward for Sequence contig_47508 - ID 661 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3941 0 7 7 Non Coding 4011 7 4 8 UTR 2 15 1 47 Phase 0 1 191 0 0 Coding 0 0 586 3 Phase 1 1 0 194 0 Intron 0 0 0 0 Phase 2 2 0 0 190 Precision Recall F1 Precision Recall F1 Intergenic 0.99949 0.99646 0.99797 Non Coding 0.99900 0.99529 0.99714 UTR 1.00000 0.23077 0.37500 Phase 0 0.96465 0.99479 0.97949 Coding 0.98653 0.99491 0.99070 Phase 1 0.97980 0.99487 0.98728 Intron 0.00000 NaN 0.00000 Phase 2 0.95960 0.98958 0.97436 Subgenic 0.90015 0.99491 0.94516 Coding 0.96801 0.99309 0.98039 Genic 0.90240 0.91896 0.91061 Reverse for Sequence contig_47508 - ID 661 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4609 0 0 0 Non Coding 4609 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_47715 - ID 662 Forward for Sequence contig_47715 - ID 662 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3141 0 0 0 Non Coding 3141 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_47715 - ID 662 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3137 0 0 0 Non Coding 3139 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 4 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99873 1.00000 0.99936 Non Coding 0.99936 1.00000 0.99968 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_48072 - ID 663 Forward for Sequence contig_48072 - ID 663 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8970 0 0 0 Non Coding 8970 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_48072 - ID 663 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3126 9 0 0 Non Coding 5028 43 45 52 UTR 23 505 11 9 Phase 0 12 1254 0 3 Coding 42 0 3886 27 Phase 1 13 4 1252 0 Intron 16 0 6 1310 Phase 2 14 0 4 1246 Precision Recall F1 Precision Recall F1 Intergenic 0.97474 0.99713 0.98581 Non Coding 0.99230 0.97291 0.98251 UTR 0.98249 0.92153 0.95104 Phase 0 0.96387 0.98818 0.97588 Coding 0.99564 0.98255 0.98906 Phase 1 0.96234 0.98660 0.97432 Intron 0.97325 0.98348 0.97834 Phase 2 0.95772 0.98576 0.97154 Subgenic 0.98990 0.98279 0.98633 Coding 0.96131 0.98685 0.97391 Genic 0.98924 0.97704 0.98310 BP_Extractor for Sequence contig_48081 - ID 664 Forward for Sequence contig_48081 - ID 664 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 536 13 1 0 Non Coding 1548 103 99 102 UTR 5 256 13 0 Phase 0 1 773 0 0 Coding 0 0 2603 8 Phase 1 0 0 777 0 Intron 23 0 11 708 Phase 2 0 0 0 774 Precision Recall F1 Precision Recall F1 Intergenic 0.95035 0.97455 0.96230 Non Coding 0.99935 0.83585 0.91032 UTR 0.95167 0.93431 0.94291 Phase 0 0.88242 0.99871 0.93697 Coding 0.99049 0.99694 0.99370 Phase 1 0.88699 1.00000 0.94011 Intron 0.98883 0.95418 0.97119 Phase 2 0.88356 1.00000 0.93818 Subgenic 0.99013 0.98747 0.98880 Coding 0.88432 0.99957 0.93842 Genic 0.98727 0.98346 0.98536 Reverse for Sequence contig_48081 - ID 664 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4160 0 0 0 Non Coding 4169 0 0 0 UTR 8 0 0 0 Phase 0 2 0 0 0 Coding 9 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99593 1.00000 0.99796 Non Coding 0.99808 1.00000 0.99904 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_48260 - ID 665 Forward for Sequence contig_48260 - ID 665 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18748 0 0 0 Non Coding 19250 0 0 0 UTR 62 0 0 0 Phase 0 267 0 0 0 Coding 1110 0 0 0 Phase 1 264 0 0 0 Intron 129 0 0 0 Phase 2 268 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93511 1.00000 0.96647 Non Coding 0.96015 1.00000 0.97967 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_48260 - ID 665 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 20049 0 0 0 Non Coding 20049 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_48310 - ID 666 Forward for Sequence contig_48310 - ID 666 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14981 4 19 28 Non Coding 16053 144 148 137 UTR 57 162 19 15 Phase 0 47 872 0 2 Coding 151 5 2996 33 Phase 1 40 2 868 0 Intron 59 0 20 692 Phase 2 47 0 2 879 Precision Recall F1 Precision Recall F1 Intergenic 0.98249 0.99661 0.98950 Non Coding 0.99172 0.97397 0.98277 UTR 0.94737 0.64032 0.76415 Phase 0 0.85658 0.94680 0.89943 Coding 0.98101 0.94066 0.96041 Phase 1 0.85265 0.95385 0.90041 Intron 0.90104 0.89754 0.89929 Phase 2 0.86346 0.94720 0.90339 Subgenic 0.96494 0.93225 0.94832 Coding 0.85756 0.94926 0.90108 Genic 0.96419 0.91471 0.93880 Reverse for Sequence contig_48310 - ID 666 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18636 2 0 0 Non Coding 18889 1 1 0 UTR 1 129 0 0 Phase 0 0 116 0 0 Coding 0 1 351 0 Phase 1 1 0 116 0 Intron 0 0 0 121 Phase 2 0 0 0 117 Precision Recall F1 Precision Recall F1 Intergenic 0.99995 0.99989 0.99992 Non Coding 0.99995 0.99989 0.99992 UTR 0.97727 0.99231 0.98473 Phase 0 0.99145 1.00000 0.99571 Coding 1.00000 0.99716 0.99858 Phase 1 0.99145 0.99145 0.99145 Intron 1.00000 1.00000 1.00000 Phase 2 1.00000 1.00000 1.00000 Subgenic 1.00000 0.99789 0.99894 Coding 0.99430 0.99714 0.99572 Genic 0.99503 0.99668 0.99586 BP_Extractor for Sequence contig_48318 - ID 667 Forward for Sequence contig_48318 - ID 667 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1900 0 0 0 Non Coding 1900 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_48318 - ID 667 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1900 0 0 0 Non Coding 1900 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_48382 - ID 668 Forward for Sequence contig_48382 - ID 668 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2680 0 0 0 Non Coding 2691 0 0 0 UTR 6 0 0 0 Phase 0 1 0 0 0 Coding 8 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99480 1.00000 0.99739 Non Coding 0.99889 1.00000 0.99944 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_48382 - ID 668 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1490 1 0 37 Non Coding 1652 26 35 33 UTR 8 79 5 0 Phase 0 4 316 2 0 Coding 16 5 1018 4 Phase 1 4 0 306 1 Intron 15 0 6 10 Phase 2 5 1 0 309 Precision Recall F1 Precision Recall F1 Intergenic 0.97449 0.97513 0.97481 Non Coding 0.99219 0.94616 0.96863 UTR 0.92941 0.85870 0.89266 Phase 0 0.92128 0.98137 0.95038 Coding 0.98931 0.97603 0.98263 Phase 1 0.89213 0.98392 0.93578 Intron 0.19608 0.32258 0.24390 Phase 2 0.90087 0.98095 0.93921 Subgenic 0.95185 0.95717 0.95450 Coding 0.90476 0.98207 0.94183 Genic 0.95021 0.94940 0.94981 BP_Extractor for Sequence contig_48451 - ID 669 Forward for Sequence contig_48451 - ID 669 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5592 0 0 0 Non Coding 5592 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_48451 - ID 669 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3527 0 0 0 Non Coding 4365 18 17 16 UTR 1 430 6 0 Phase 0 0 390 0 0 Coding 0 0 1213 14 Phase 1 2 0 391 0 Intron 0 0 5 396 Phase 2 1 0 0 392 Precision Recall F1 Precision Recall F1 Intergenic 0.99972 1.00000 0.99986 Non Coding 0.99931 0.98845 0.99385 UTR 1.00000 0.98398 0.99193 Phase 0 0.95588 1.00000 0.97744 Coding 0.99101 0.98859 0.98980 Phase 1 0.95833 0.99491 0.97628 Intron 0.96585 0.98753 0.97657 Phase 2 0.96078 0.99746 0.97878 Subgenic 0.98470 0.98833 0.98651 Coding 0.95833 0.99745 0.97750 Genic 0.98789 0.98741 0.98765 BP_Extractor for Sequence contig_48516 - ID 670 Forward for Sequence contig_48516 - ID 670 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10219 0 0 0 Non Coding 10219 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_48516 - ID 670 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5956 0 52 44 Non Coding 9386 87 86 84 UTR 2 47 9 0 Phase 0 1 190 0 0 Coding 0 3 732 1 Phase 1 1 0 190 0 Intron 7 0 37 3329 Phase 2 1 0 0 193 Precision Recall F1 Precision Recall F1 Intergenic 0.99849 0.98414 0.99126 Non Coding 0.99968 0.97335 0.98634 UTR 0.94000 0.81034 0.87037 Phase 0 0.68592 0.99476 0.81197 Coding 0.88193 0.99457 0.93487 Phase 1 0.68841 0.99476 0.81370 Intron 0.98666 0.98696 0.98681 Phase 2 0.69675 0.99485 0.81953 Subgenic 0.96598 0.98832 0.97702 Coding 0.69036 0.99479 0.81508 Genic 0.96568 0.98584 0.97566 BP_Extractor for Sequence contig_48706 - ID 671 Forward for Sequence contig_48706 - ID 671 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1952 0 0 0 Non Coding 5769 3 3 6 UTR 40 276 0 2 Phase 0 21 249 0 0 Coding 22 4 745 25 Phase 1 21 0 249 0 Intron 1684 0 11 1828 Phase 2 22 0 0 246 Precision Recall F1 Precision Recall F1 Intergenic 0.52785 1.00000 0.69097 Non Coding 0.98903 0.99792 0.99346 UTR 0.98571 0.86792 0.92308 Phase 0 0.98810 0.92222 0.95402 Coding 0.98545 0.93593 0.96005 Phase 1 0.98810 0.92222 0.95402 Intron 0.98544 0.51888 0.67981 Phase 2 0.97619 0.91791 0.94615 Subgenic 0.98545 0.59574 0.74257 Coding 0.98413 0.92079 0.95141 Genic 0.98547 0.61441 0.75691 Reverse for Sequence contig_48706 - ID 671 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6589 0 0 0 Non Coding 6589 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_48835 - ID 672 Forward for Sequence contig_48835 - ID 672 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5349 0 0 0 Non Coding 5809 0 0 0 UTR 65 0 0 0 Phase 0 500 0 0 0 Coding 1816 0 0 0 Phase 1 513 0 0 0 Intron 109 0 0 0 Phase 2 517 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.72885 1.00000 0.84316 Non Coding 0.79152 1.00000 0.88363 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_48835 - ID 672 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2869 7 228 46 Non Coding 4614 299 324 300 UTR 24 418 32 0 Phase 0 37 564 7 0 Coding 120 21 2335 13 Phase 1 37 0 540 7 Intron 0 6 18 1202 Phase 2 38 8 0 564 Precision Recall F1 Precision Recall F1 Intergenic 0.95221 0.91079 0.93104 Non Coding 0.97630 0.83330 0.89915 UTR 0.92478 0.88186 0.90281 Phase 0 0.64753 0.92763 0.76268 Coding 0.89361 0.93813 0.91533 Phase 1 0.61998 0.92466 0.74227 Intron 0.95321 0.98042 0.96663 Phase 2 0.64753 0.92459 0.76165 Subgenic 0.91301 0.95209 0.93214 Coding 0.63835 0.92564 0.75561 Genic 0.91424 0.94414 0.92895 BP_Extractor for Sequence contig_49089 - ID 673 Forward for Sequence contig_49089 - ID 673 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3102 0 0 0 Non Coding 3102 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_49089 - ID 673 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3102 0 0 0 Non Coding 3102 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_49100 - ID 674 Forward for Sequence contig_49100 - ID 674 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 18594 2 0 0 Non Coding 19745 28 30 34 UTR 0 462 2 3 Phase 0 2 332 0 0 Coding 2 2 1065 17 Phase 1 2 0 330 0 Intron 1 4 13 666 Phase 2 4 0 0 326 Precision Recall F1 Precision Recall F1 Intergenic 0.99984 0.99989 0.99987 Non Coding 0.99959 0.99536 0.99747 UTR 0.98298 0.98929 0.98613 Phase 0 0.92222 0.99401 0.95677 Coding 0.98611 0.98066 0.98338 Phase 1 0.91667 0.99398 0.95376 Intron 0.97085 0.97368 0.97226 Phase 2 0.90556 0.98788 0.94493 Subgenic 0.98018 0.97797 0.97907 Coding 0.91481 0.99197 0.95183 Genic 0.98077 0.98033 0.98055 Reverse for Sequence contig_49100 - ID 674 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15069 0 166 190 Non Coding 17473 91 86 86 UTR 133 140 1 3 Phase 0 383 639 11 0 Coding 1279 7 2044 18 Phase 1 376 0 643 10 Intron 1206 21 9 547 Phase 2 381 10 0 644 Precision Recall F1 Precision Recall F1 Intergenic 0.85198 0.97692 0.91018 Non Coding 0.93875 0.98517 0.96140 UTR 0.83333 0.50542 0.62921 Phase 0 0.86351 0.61859 0.72081 Coding 0.92072 0.61051 0.73420 Phase 1 0.86892 0.62488 0.72696 Intron 0.72164 0.30679 0.43054 Phase 2 0.87027 0.62222 0.72563 Subgenic 0.87005 0.50497 0.63904 Coding 0.86757 0.62189 0.72447 Genic 0.86809 0.50499 0.63853 BP_Extractor for Sequence contig_49112 - ID 675 Forward for Sequence contig_49112 - ID 675 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2662 0 0 0 Non Coding 2662 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_49112 - ID 675 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 0 0 0 0 Non Coding 2262 13 15 14 UTR 0 0 6 15 Phase 0 2 118 0 0 Coding 0 0 381 25 Phase 1 2 1 116 0 Intron 18 1 7 2209 Phase 2 2 0 0 117 Precision Recall F1 Precision Recall F1 Intergenic 0.00000 NaN 0.00000 Non Coding 0.99735 0.98177 0.98950 UTR 0.00000 0.00000 0.00000 Phase 0 0.89394 0.98333 0.93651 Coding 0.96701 0.93842 0.95250 Phase 1 0.88550 0.97479 0.92800 Intron 0.98221 0.98837 0.98528 Phase 2 0.89313 0.98319 0.93600 Subgenic 0.97995 0.98069 0.98032 Coding 0.89086 0.98045 0.93351 Genic 0.97958 0.97295 0.97625 BP_Extractor for Sequence contig_49247 - ID 676 Forward for Sequence contig_49247 - ID 676 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10083 1 0 9 Non Coding 10408 3 2 3 UTR 2 94 0 9 Phase 0 0 326 0 0 Coding 0 2 981 4 Phase 1 1 0 327 0 Intron 57 4 6 144 Phase 2 0 0 0 326 Precision Recall F1 Precision Recall F1 Intergenic 0.99418 0.99901 0.99659 Non Coding 0.99990 0.99923 0.99957 UTR 0.93069 0.89524 0.91262 Phase 0 0.99088 1.00000 0.99542 Coding 0.99392 0.99392 0.99392 Phase 1 0.99392 0.99695 0.99543 Intron 0.86747 0.68246 0.76393 Phase 2 0.99088 1.00000 0.99542 Subgenic 0.97572 0.93907 0.95704 Coding 0.99189 0.99898 0.99542 Genic 0.97209 0.93553 0.95346 Reverse for Sequence contig_49247 - ID 676 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11396 0 0 0 Non Coding 11396 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_49264 - ID 677 Forward for Sequence contig_49264 - ID 677 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10065 7 368 0 Non Coding 11699 562 569 580 UTR 62 172 35 13 Phase 0 86 887 0 0 Coding 431 1 3934 67 Phase 1 94 0 880 0 Intron 65 0 10 1084 Phase 2 88 0 0 869 Precision Recall F1 Precision Recall F1 Intergenic 0.94747 0.96408 0.95570 Non Coding 0.97761 0.87241 0.92202 UTR 0.95556 0.60993 0.74459 Phase 0 0.61215 0.91161 0.73245 Coding 0.90499 0.88744 0.89613 Phase 1 0.60732 0.90349 0.72637 Intron 0.93127 0.93529 0.93328 Phase 2 0.59972 0.90805 0.72236 Subgenic 0.91054 0.89735 0.90390 Coding 0.60640 0.90771 0.72707 Genic 0.91197 0.88355 0.89754 Reverse for Sequence contig_49264 - ID 677 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16290 0 0 0 Non Coding 16287 0 0 0 UTR 8 0 0 0 Phase 0 17 0 0 0 Coding 16 0 0 0 Phase 1 6 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99853 1.00000 0.99926 Non Coding 0.99834 1.00000 0.99917 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_49356 - ID 678 Forward for Sequence contig_49356 - ID 678 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13828 0 0 0 Non Coding 13835 0 0 0 UTR 6 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99942 1.00000 0.99971 Non Coding 0.99993 1.00000 0.99996 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_49356 - ID 678 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13555 0 0 0 Non Coding 13681 0 0 0 UTR 40 0 0 0 Phase 0 48 0 0 0 Coding 195 0 0 0 Phase 1 58 0 0 0 Intron 46 0 0 0 Phase 2 49 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97969 1.00000 0.98974 Non Coding 0.98880 1.00000 0.99437 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_49507 - ID 679 Forward for Sequence contig_49507 - ID 679 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4113 0 0 0 Non Coding 4113 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_49507 - ID 679 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4094 0 0 0 Non Coding 4103 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 15 0 0 0 Phase 1 3 0 0 0 Intron 4 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99538 1.00000 0.99768 Non Coding 0.99757 1.00000 0.99878 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_49557 - ID 680 Forward for Sequence contig_49557 - ID 680 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10876 0 0 0 Non Coding 10876 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_49557 - ID 680 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7117 7 0 0 Non Coding 10143 6 9 8 UTR 4 255 8 3 Phase 0 0 237 0 0 Coding 0 0 719 13 Phase 1 2 0 234 0 Intron 8 0 2 2740 Phase 2 2 0 0 235 Precision Recall F1 Precision Recall F1 Intergenic 0.99832 0.99902 0.99867 Non Coding 0.99961 0.99774 0.99867 UTR 0.97328 0.94444 0.95865 Phase 0 0.97531 1.00000 0.98750 Coding 0.98628 0.98224 0.98426 Phase 1 0.96296 0.99153 0.97704 Intron 0.99419 0.99636 0.99528 Phase 2 0.96708 0.99156 0.97917 Subgenic 0.99254 0.99339 0.99297 Coding 0.96845 0.99437 0.98124 Genic 0.99119 0.98987 0.99053 BP_Extractor for Sequence contig_49630 - ID 681 Forward for Sequence contig_49630 - ID 681 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2345 0 0 0 Non Coding 2348 0 0 0 UTR 7 0 0 0 Phase 0 5 0 0 0 Coding 3 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99575 1.00000 0.99787 Non Coding 0.99703 1.00000 0.99851 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_49630 - ID 681 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2355 0 0 0 Non Coding 2355 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_49675 - ID 682 Forward for Sequence contig_49675 - ID 682 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6409 0 0 0 Non Coding 6409 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_49675 - ID 682 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4057 7 0 0 Non Coding 5431 3 1 1 UTR 10 449 0 0 Phase 0 0 322 0 0 Coding 0 2 971 1 Phase 1 2 0 324 0 Intron 0 0 4 908 Phase 2 1 0 0 324 Precision Recall F1 Precision Recall F1 Intergenic 0.99754 0.99828 0.99791 Non Coding 0.99945 0.99908 0.99926 UTR 0.98035 0.97821 0.97928 Phase 0 0.99077 1.00000 0.99536 Coding 0.99590 0.99692 0.99641 Phase 1 0.99692 0.99387 0.99539 Intron 0.99890 0.99561 0.99725 Phase 2 0.99692 0.99692 0.99692 Subgenic 0.99735 0.99629 0.99682 Coding 0.99487 0.99692 0.99589 Genic 0.99402 0.99275 0.99339 BP_Extractor for Sequence contig_49692 - ID 683 Forward for Sequence contig_49692 - ID 683 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8992 2 0 0 Non Coding 9988 0 1 1 UTR 16 129 2 4 Phase 0 3 132 0 0 Coding 15 5 394 0 Phase 1 5 0 131 0 Intron 30 1 0 807 Phase 2 5 0 0 131 Precision Recall F1 Precision Recall F1 Intergenic 0.99326 0.99978 0.99651 Non Coding 0.99870 0.99980 0.99925 UTR 0.94161 0.85430 0.89583 Phase 0 1.00000 0.97778 0.98876 Coding 0.99495 0.95169 0.97284 Phase 1 0.99242 0.96324 0.97761 Intron 0.99507 0.96301 0.97878 Phase 2 0.99242 0.96324 0.97761 Subgenic 0.99503 0.95927 0.97682 Coding 0.99495 0.96806 0.98132 Genic 0.98958 0.94797 0.96833 Reverse for Sequence contig_49692 - ID 683 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7902 2 35 44 Non Coding 8447 81 84 83 UTR 40 133 12 5 Phase 0 9 562 0 0 Coding 20 6 1882 10 Phase 1 6 0 559 0 Intron 8 0 0 298 Phase 2 6 0 0 560 Precision Recall F1 Precision Recall F1 Intergenic 0.99147 0.98985 0.99066 Non Coding 0.99752 0.97148 0.98433 UTR 0.94326 0.70000 0.80363 Phase 0 0.87403 0.98424 0.92586 Coding 0.97564 0.98123 0.97842 Phase 1 0.86936 0.98938 0.92550 Intron 0.83473 0.97386 0.89894 Phase 2 0.87092 0.98940 0.92639 Subgenic 0.95363 0.98022 0.96674 Coding 0.87144 0.98766 0.92592 Genic 0.95303 0.95816 0.95559 BP_Extractor for Sequence contig_49835 - ID 684 Forward for Sequence contig_49835 - ID 684 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4875 1 0 0 Non Coding 5066 3 3 3 UTR 0 150 4 0 Phase 0 4 83 0 0 Coding 0 0 254 13 Phase 1 4 0 83 0 Intron 0 0 0 39 Phase 2 4 0 0 83 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99979 0.99990 Non Coding 0.99764 0.99823 0.99793 UTR 0.99338 0.97403 0.98361 Phase 0 0.96512 0.95402 0.95954 Coding 0.98450 0.95131 0.96762 Phase 1 0.96512 0.95402 0.95954 Intron 0.75000 1.00000 0.85714 Phase 2 0.96512 0.95402 0.95954 Subgenic 0.94516 0.95752 0.95130 Coding 0.96512 0.95402 0.95954 Genic 0.96095 0.96304 0.96200 Reverse for Sequence contig_49835 - ID 684 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1415 2 0 154 Non Coding 4182 27 31 31 UTR 2 83 0 6 Phase 0 2 356 0 0 Coding 0 0 1139 22 Phase 1 1 0 352 0 Intron 28 1 10 2474 Phase 2 2 0 0 352 Precision Recall F1 Precision Recall F1 Intergenic 0.97924 0.90070 0.93833 Non Coding 0.99881 0.97916 0.98889 UTR 0.96512 0.91209 0.93785 Phase 0 0.92950 0.99441 0.96086 Coding 0.99130 0.98105 0.98615 Phase 1 0.91906 0.99717 0.95652 Intron 0.93148 0.98448 0.95725 Phase 2 0.91906 0.99435 0.95522 Subgenic 0.94954 0.98340 0.96617 Coding 0.92254 0.99531 0.95754 Genic 0.94988 0.98167 0.96552 BP_Extractor for Sequence contig_49985 - ID 685 Forward for Sequence contig_49985 - ID 685 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4556 0 0 0 Non Coding 4556 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_49985 - ID 685 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1671 0 0 0 Non Coding 4034 6 6 6 UTR 25 98 15 0 Phase 0 4 162 0 0 Coding 34 6 489 0 Phase 1 8 0 162 0 Intron 0 0 0 2218 Phase 2 6 0 0 162 Precision Recall F1 Precision Recall F1 Intergenic 0.96590 1.00000 0.98265 Non Coding 0.99556 0.99556 0.99556 UTR 0.94231 0.71014 0.80992 Phase 0 0.96429 0.97590 0.97006 Coding 0.97024 0.92439 0.94676 Phase 1 0.96429 0.95294 0.95858 Intron 1.00000 1.00000 1.00000 Phase 2 0.96429 0.96429 0.96429 Subgenic 0.99449 0.98544 0.98994 Coding 0.96429 0.96429 0.96429 Genic 0.99257 0.97227 0.98231 BP_Extractor for Sequence contig_50069 - ID 686 Forward for Sequence contig_50069 - ID 686 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2711 0 0 0 Non Coding 2711 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_50069 - ID 686 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2711 0 0 0 Non Coding 2711 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_50144 - ID 687 Forward for Sequence contig_50144 - ID 687 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10848 0 0 0 Non Coding 10847 0 0 0 UTR 1 0 0 0 Phase 0 3 0 0 0 Coding 4 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99954 1.00000 0.99977 Non Coding 0.99945 1.00000 0.99972 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_50144 - ID 687 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5369 8 3 16 Non Coding 8535 127 136 133 UTR 11 153 16 0 Phase 0 5 638 0 0 Coding 36 16 2237 7 Phase 1 10 0 629 0 Intron 15 17 39 2910 Phase 2 8 0 0 632 Precision Recall F1 Precision Recall F1 Intergenic 0.98858 0.99500 0.99178 Non Coding 0.99731 0.95566 0.97604 UTR 0.78866 0.85000 0.81818 Phase 0 0.83399 0.99222 0.90625 Coding 0.97473 0.97430 0.97452 Phase 1 0.82222 0.98435 0.89601 Intron 0.99216 0.97618 0.98411 Phase 2 0.82614 0.98750 0.89964 Subgenic 0.98451 0.97536 0.97991 Coding 0.82745 0.98803 0.90064 Genic 0.97750 0.97123 0.97435 BP_Extractor for Sequence contig_50342 - ID 688 Forward for Sequence contig_50342 - ID 688 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11328 11 0 25 Non Coding 11944 34 36 40 UTR 11 301 3 13 Phase 0 2 456 0 0 Coding 0 1 1455 25 Phase 1 1 0 454 0 Intron 17 1 12 215 Phase 2 1 0 0 450 Precision Recall F1 Precision Recall F1 Intergenic 0.99753 0.99683 0.99718 Non Coding 0.99967 0.99087 0.99525 UTR 0.95860 0.91768 0.93769 Phase 0 0.93061 0.99563 0.96203 Coding 0.98980 0.98244 0.98611 Phase 1 0.92653 0.99780 0.96085 Intron 0.77338 0.87755 0.82218 Phase 2 0.91837 0.99778 0.95643 Subgenic 0.95538 0.96756 0.96143 Coding 0.92517 0.99707 0.95977 Genic 0.95587 0.95959 0.95773 Reverse for Sequence contig_50342 - ID 688 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12919 0 0 0 Non Coding 13061 0 0 0 UTR 112 0 0 0 Phase 0 125 0 0 0 Coding 387 0 0 0 Phase 1 114 0 0 0 Intron 0 0 0 0 Phase 2 118 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96281 1.00000 0.98105 Non Coding 0.97339 1.00000 0.98652 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_50590 - ID 689 Forward for Sequence contig_50590 - ID 689 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7788 0 0 0 Non Coding 7915 0 0 0 UTR 55 0 0 0 Phase 0 177 0 0 0 Coding 568 0 0 0 Phase 1 183 0 0 0 Intron 30 0 0 0 Phase 2 166 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92264 1.00000 0.95976 Non Coding 0.93769 1.00000 0.96784 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_50590 - ID 689 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7115 0 0 0 Non Coding 7375 0 0 0 UTR 103 0 0 0 Phase 0 357 0 0 0 Coding 1176 0 0 0 Phase 1 355 0 0 0 Intron 47 0 0 0 Phase 2 354 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84291 1.00000 0.91476 Non Coding 0.87371 1.00000 0.93260 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_50653 - ID 690 Forward for Sequence contig_50653 - ID 690 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4031 0 0 0 Non Coding 4031 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_50653 - ID 690 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4031 0 0 0 Non Coding 4031 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_50734 - ID 691 Forward for Sequence contig_50734 - ID 691 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4333 0 0 0 Non Coding 4333 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_50734 - ID 691 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2628 1 1 25 Non Coding 3299 8 10 9 UTR 3 59 1 0 Phase 0 0 336 0 0 Coding 0 2 1022 3 Phase 1 1 0 334 0 Intron 68 0 8 512 Phase 2 1 0 0 335 Precision Recall F1 Precision Recall F1 Intergenic 0.97369 0.98983 0.98170 Non Coding 0.99939 0.99188 0.99562 UTR 0.95161 0.93651 0.94400 Phase 0 0.97674 1.00000 0.98824 Coding 0.99031 0.99513 0.99271 Phase 1 0.97093 0.99701 0.98380 Intron 0.94815 0.87075 0.90780 Phase 2 0.97384 0.99702 0.98529 Subgenic 0.97583 0.94985 0.96266 Coding 0.97384 0.99801 0.98578 Genic 0.97491 0.94934 0.96196 BP_Extractor for Sequence contig_50750 - ID 692 Forward for Sequence contig_50750 - ID 692 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3235 0 0 0 Non Coding 3235 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_50750 - ID 692 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2431 0 0 0 Non Coding 2574 0 0 0 UTR 19 0 0 0 Phase 0 221 0 0 0 Coding 765 0 0 0 Phase 1 217 0 0 0 Intron 20 0 0 0 Phase 2 223 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.75147 1.00000 0.85810 Non Coding 0.79567 1.00000 0.88621 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_50905 - ID 693 Forward for Sequence contig_50905 - ID 693 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14116 4 28 19 Non Coding 16400 85 82 90 UTR 76 432 22 0 Phase 0 227 1288 2 0 Coding 678 3 4059 100 Phase 1 225 0 1289 0 Intron 11 0 10 1640 Phase 2 227 0 0 1283 Precision Recall F1 Precision Recall F1 Intergenic 0.94859 0.99640 0.97191 Non Coding 0.96024 0.98457 0.97226 UTR 0.98405 0.81509 0.89164 Phase 0 0.93809 0.84904 0.89135 Coding 0.98543 0.83864 0.90613 Phase 1 0.93882 0.85139 0.89297 Intron 0.93235 0.98736 0.95906 Phase 2 0.93445 0.84967 0.89005 Subgenic 0.96955 0.87663 0.92075 Coding 0.93712 0.85003 0.89145 Genic 0.97056 0.87200 0.91864 Reverse for Sequence contig_50905 - ID 693 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15096 6 161 47 Non Coding 18114 228 231 235 UTR 13 501 8 3 Phase 0 10 791 0 1 Coding 2 7 2839 39 Phase 1 9 0 787 0 Intron 123 10 49 2294 Phase 2 8 0 1 783 Precision Recall F1 Precision Recall F1 Intergenic 0.99094 0.98602 0.98848 Non Coding 0.99851 0.96310 0.98049 UTR 0.95611 0.95429 0.95520 Phase 0 0.77625 0.98628 0.86875 Coding 0.92869 0.98337 0.95525 Phase 1 0.77233 0.98869 0.86722 Intron 0.96265 0.92649 0.94423 Phase 2 0.76840 0.98864 0.86472 Subgenic 0.94357 0.95711 0.95029 Coding 0.77233 0.98787 0.86690 Genic 0.94467 0.95686 0.95073 BP_Extractor for Sequence contig_50926 - ID 694 Forward for Sequence contig_50926 - ID 694 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3610 0 1 0 Non Coding 4064 41 35 40 UTR 23 12 7 0 Phase 0 11 307 0 0 Coding 87 0 1033 0 Phase 1 12 0 313 0 Intron 68 0 3 305 Phase 2 18 0 0 308 Precision Recall F1 Precision Recall F1 Intergenic 0.95301 0.99972 0.97581 Non Coding 0.99001 0.97225 0.98105 UTR 1.00000 0.28571 0.44444 Phase 0 0.88218 0.96541 0.92192 Coding 0.98946 0.92232 0.95471 Phase 1 0.89943 0.96308 0.93016 Intron 1.00000 0.81117 0.89574 Phase 2 0.88506 0.94479 0.91395 Subgenic 0.99185 0.89439 0.94060 Coding 0.88889 0.95769 0.92201 Genic 0.99192 0.87776 0.93136 Reverse for Sequence contig_50926 - ID 694 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4637 0 0 0 Non Coding 4725 0 0 0 UTR 33 0 0 0 Phase 0 150 0 0 0 Coding 454 0 0 0 Phase 1 127 0 0 0 Intron 25 0 0 0 Phase 2 147 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90056 1.00000 0.94768 Non Coding 0.91765 1.00000 0.95706 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_51035 - ID 695 Forward for Sequence contig_51035 - ID 695 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6449 0 0 0 Non Coding 6455 0 0 0 UTR 8 0 0 0 Phase 0 4 0 0 0 Coding 11 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99706 1.00000 0.99853 Non Coding 0.99799 1.00000 0.99899 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_51035 - ID 695 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3560 1 22 46 Non Coding 3976 138 133 146 UTR 12 89 9 0 Phase 0 12 682 0 0 Coding 19 0 2412 65 Phase 1 9 0 687 0 Intron 2 0 17 214 Phase 2 11 0 0 674 Precision Recall F1 Precision Recall F1 Intergenic 0.99082 0.98099 0.98588 Non Coding 0.99202 0.90508 0.94655 UTR 0.98889 0.80909 0.89000 Phase 0 0.83171 0.98271 0.90092 Coding 0.98049 0.96635 0.97337 Phase 1 0.83780 0.98707 0.90633 Intron 0.65846 0.91845 0.76703 Phase 2 0.82195 0.98394 0.89568 Subgenic 0.94291 0.96226 0.95248 Coding 0.83049 0.98458 0.90099 Genic 0.94435 0.95632 0.95030 BP_Extractor for Sequence contig_51143 - ID 696 Forward for Sequence contig_51143 - ID 696 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5814 3 0 3 Non Coding 8215 2 2 2 UTR 5 566 6 0 Phase 0 0 208 0 0 Coding 0 4 624 0 Phase 1 0 0 208 0 Intron 9 11 0 1800 Phase 2 0 0 0 208 Precision Recall F1 Precision Recall F1 Intergenic 0.99760 0.99897 0.99828 Non Coding 1.00000 0.99927 0.99963 UTR 0.96918 0.98094 0.97502 Phase 0 0.99048 1.00000 0.99522 Coding 0.99048 0.99363 0.99205 Phase 1 0.99048 1.00000 0.99522 Intron 0.99834 0.98901 0.99365 Phase 2 0.99048 1.00000 0.99522 Subgenic 0.99630 0.99020 0.99324 Coding 0.99048 1.00000 0.99522 Genic 0.99105 0.98843 0.98974 Reverse for Sequence contig_51143 - ID 696 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7680 0 0 0 Non Coding 8201 0 0 0 UTR 70 0 0 0 Phase 0 211 0 0 0 Coding 777 0 0 0 Phase 1 217 0 0 0 Intron 318 0 0 0 Phase 2 216 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.86829 1.00000 0.92950 Non Coding 0.92719 1.00000 0.96222 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_51156 - ID 697 Forward for Sequence contig_51156 - ID 697 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13821 0 0 0 Non Coding 14082 0 0 0 UTR 230 0 0 0 Phase 0 234 0 0 0 Coding 733 0 0 0 Phase 1 235 0 0 0 Intron 5 0 0 0 Phase 2 238 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93455 1.00000 0.96617 Non Coding 0.95219 1.00000 0.97551 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_51156 - ID 697 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10155 4 2 365 Non Coding 13371 27 25 25 UTR 41 127 8 20 Phase 0 12 434 0 0 Coding 87 7 1340 19 Phase 1 13 0 436 0 Intron 45 1 33 2535 Phase 2 10 0 0 436 Precision Recall F1 Precision Recall F1 Intergenic 0.98325 0.96475 0.97391 Non Coding 0.99739 0.99427 0.99583 UTR 0.91367 0.64796 0.75821 Phase 0 0.94143 0.97309 0.95700 Coding 0.96891 0.92223 0.94499 Phase 1 0.94577 0.97105 0.95824 Intron 0.86254 0.96978 0.91302 Phase 2 0.94577 0.97758 0.96141 Subgenic 0.89658 0.95279 0.92383 Coding 0.94432 0.97390 0.95888 Genic 0.89711 0.93878 0.91747 BP_Extractor for Sequence contig_51211 - ID 698 Forward for Sequence contig_51211 - ID 698 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4759 0 0 0 Non Coding 4759 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_51211 - ID 698 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3697 0 0 0 Non Coding 3954 0 0 0 UTR 31 0 0 0 Phase 0 267 0 0 0 Coding 921 0 0 0 Phase 1 275 0 0 0 Intron 110 0 0 0 Phase 2 263 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.77684 1.00000 0.87441 Non Coding 0.83085 1.00000 0.90761 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_51254 - ID 699 Forward for Sequence contig_51254 - ID 699 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2868 0 0 0 Non Coding 2868 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_51254 - ID 699 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2868 0 0 0 Non Coding 2868 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_51489 - ID 700 Forward for Sequence contig_51489 - ID 700 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2573 0 0 0 Non Coding 2577 0 0 0 UTR 6 0 0 0 Phase 0 7 0 0 0 Coding 13 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99267 1.00000 0.99632 Non Coding 0.99421 1.00000 0.99710 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_51489 - ID 700 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2590 0 0 0 Non Coding 2590 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 2 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99923 1.00000 0.99961 Non Coding 0.99923 1.00000 0.99961 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_51572 - ID 701 Forward for Sequence contig_51572 - ID 701 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8421 0 0 0 Non Coding 8421 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_51572 - ID 701 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4680 5 0 105 Non Coding 6591 14 15 18 UTR 5 244 0 10 Phase 0 1 594 0 0 Coding 51 2 1802 19 Phase 1 1 0 594 0 Intron 5 0 25 1468 Phase 2 1 1 0 591 Precision Recall F1 Precision Recall F1 Intergenic 0.98713 0.97704 0.98206 Non Coding 0.99955 0.99292 0.99622 UTR 0.97211 0.94208 0.95686 Phase 0 0.97537 0.99832 0.98671 Coding 0.98632 0.96158 0.97379 Phase 1 0.97537 0.99832 0.98671 Intron 0.91635 0.97997 0.94710 Phase 2 0.97044 0.99663 0.98336 Subgenic 0.95363 0.96975 0.96162 Coding 0.97373 0.99776 0.98560 Genic 0.95489 0.96778 0.96129 BP_Extractor for Sequence contig_51621 - ID 702 Forward for Sequence contig_51621 - ID 702 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1256 0 0 9 Non Coding 14054 7 6 6 UTR 26 595 10 4 Phase 0 8 540 0 0 Coding 53 8 1620 3 Phase 1 4 0 541 0 Intron 580 20 11 11518 Phase 2 6 0 0 541 Precision Recall F1 Precision Recall F1 Intergenic 0.65587 0.99289 0.78994 Non Coding 0.99872 0.99865 0.99869 UTR 0.95506 0.93701 0.94595 Phase 0 0.98720 0.98540 0.98630 Coding 0.98720 0.96200 0.97444 Phase 1 0.98903 0.99266 0.99084 Intron 0.99861 0.94962 0.97350 Phase 2 0.98903 0.98903 0.98903 Subgenic 0.99719 0.95113 0.97362 Coding 0.98842 0.98902 0.98872 Genic 0.99529 0.95051 0.97239 Reverse for Sequence contig_51621 - ID 702 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11929 1 12 22 Non Coding 12829 114 106 109 UTR 20 274 16 125 Phase 0 2 845 0 0 Coding 9 1 2839 44 Phase 1 2 0 853 0 Intron 61 3 10 347 Phase 2 3 0 0 850 Precision Recall F1 Precision Recall F1 Intergenic 0.99251 0.99707 0.99479 Non Coding 0.99945 0.97500 0.98707 UTR 0.98208 0.62989 0.76751 Phase 0 0.88113 0.99764 0.93577 Coding 0.98679 0.98133 0.98406 Phase 1 0.88947 0.99766 0.94046 Intron 0.64498 0.82423 0.72367 Phase 2 0.88634 0.99648 0.93819 Subgenic 0.93294 0.96138 0.94695 Coding 0.88564 0.99726 0.93814 Genic 0.93665 0.92291 0.92973 BP_Extractor for Sequence contig_51629 - ID 703 Forward for Sequence contig_51629 - ID 703 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2545 0 0 0 Non Coding 2545 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_51629 - ID 703 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2545 0 0 0 Non Coding 2545 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_51630 - ID 704 Forward for Sequence contig_51630 - ID 704 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12149 0 0 0 Non Coding 12149 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_51630 - ID 704 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12139 0 0 0 Non Coding 12147 0 0 0 UTR 7 0 0 0 Phase 0 1 0 0 0 Coding 3 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99918 1.00000 0.99959 Non Coding 0.99984 1.00000 0.99992 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_51669 - ID 705 Forward for Sequence contig_51669 - ID 705 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4637 0 0 0 Non Coding 4637 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_51669 - ID 705 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4637 0 0 0 Non Coding 4637 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_51673 - ID 706 Forward for Sequence contig_51673 - ID 706 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2843 7 0 0 Non Coding 3054 6 5 4 UTR 6 123 1 0 Phase 0 1 75 0 0 Coding 4 0 242 1 Phase 1 0 0 76 0 Intron 0 0 0 72 Phase 2 1 0 0 77 Precision Recall F1 Precision Recall F1 Intergenic 0.99649 0.99754 0.99702 Non Coding 0.99935 0.99511 0.99722 UTR 0.94615 0.94615 0.94615 Phase 0 0.92593 0.98684 0.95541 Coding 0.99588 0.97976 0.98776 Phase 1 0.93827 1.00000 0.96815 Intron 0.98630 1.00000 0.99310 Phase 2 0.95062 0.98718 0.96855 Subgenic 0.99367 0.98433 0.98898 Coding 0.93827 0.99130 0.96406 Genic 0.97982 0.97327 0.97654 Reverse for Sequence contig_51673 - ID 706 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3299 0 0 0 Non Coding 3299 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_51756 - ID 707 Forward for Sequence contig_51756 - ID 707 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6299 3 2 147 Non Coding 6700 23 24 24 UTR 40 75 4 2 Phase 0 13 148 0 8 Coding 40 11 527 4 Phase 1 17 7 146 0 Intron 14 1 1 109 Phase 2 15 0 8 146 Precision Recall F1 Precision Recall F1 Intergenic 0.98530 0.97644 0.98085 Non Coding 0.99333 0.98951 0.99142 UTR 0.83333 0.61983 0.71090 Phase 0 0.83146 0.87574 0.85303 Coding 0.98689 0.90550 0.94444 Phase 1 0.82022 0.85882 0.83908 Intron 0.41603 0.87200 0.56331 Phase 2 0.82022 0.86391 0.84150 Subgenic 0.79899 0.89958 0.84631 Coding 0.82397 0.86614 0.84453 Genic 0.80248 0.85870 0.82964 Reverse for Sequence contig_51756 - ID 707 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7279 0 0 0 Non Coding 7279 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_51794 - ID 708 Forward for Sequence contig_51794 - ID 708 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12437 0 0 0 Non Coding 12442 0 0 0 UTR 5 0 0 0 Phase 0 3 0 0 0 Coding 5 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99920 1.00000 0.99960 Non Coding 0.99960 1.00000 0.99980 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_51794 - ID 708 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12447 0 0 0 Non Coding 12447 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_52041 - ID 709 Forward for Sequence contig_52041 - ID 709 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11122 3 0 0 Non Coding 14234 1 1 1 UTR 140 413 2 29 Phase 0 676 440 0 0 Coding 3268 0 1321 0 Phase 1 696 0 440 0 Intron 961 0 0 348 Phase 2 678 0 0 440 Precision Recall F1 Precision Recall F1 Intergenic 0.71797 0.99973 0.83574 Non Coding 0.87411 0.99979 0.93273 UTR 0.99279 0.70719 0.82600 Phase 0 0.99773 0.39427 0.56519 Coding 0.99849 0.28786 0.44689 Phase 1 0.99773 0.38732 0.55802 Intron 0.92308 0.26585 0.41281 Phase 2 0.99773 0.39356 0.56446 Subgenic 0.98176 0.28298 0.43933 Coding 0.99773 0.39169 0.56254 Genic 0.98393 0.32120 0.48430 Reverse for Sequence contig_52041 - ID 709 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 17401 0 0 0 Non Coding 17415 0 0 0 UTR 29 0 0 0 Phase 0 72 0 0 0 Coding 175 0 0 0 Phase 1 58 0 0 0 Intron 2 0 0 0 Phase 2 62 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98830 1.00000 0.99412 Non Coding 0.98910 1.00000 0.99452 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_52102 - ID 710 Forward for Sequence contig_52102 - ID 710 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15127 4 0 0 Non Coding 15855 3 4 6 UTR 102 378 1 0 Phase 0 150 62 0 0 Coding 469 0 194 12 Phase 1 153 0 61 0 Intron 42 0 0 177 Phase 2 153 0 0 59 Precision Recall F1 Precision Recall F1 Intergenic 0.96105 0.99974 0.98001 Non Coding 0.97204 0.99918 0.98543 UTR 0.98953 0.78586 0.87601 Phase 0 0.95385 0.29245 0.44765 Coding 0.99487 0.28741 0.44598 Phase 1 0.93846 0.28505 0.43728 Intron 0.93651 0.80822 0.86765 Phase 2 0.90769 0.27830 0.42599 Subgenic 0.96615 0.41499 0.58059 Coding 0.93333 0.28527 0.43697 Genic 0.97781 0.54473 0.69967 Reverse for Sequence contig_52102 - ID 710 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14444 0 0 0 Non Coding 15087 0 0 0 UTR 119 0 0 0 Phase 0 470 0 0 0 Coding 1700 0 0 0 Phase 1 478 0 0 0 Intron 243 0 0 0 Phase 2 471 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.87508 1.00000 0.93338 Non Coding 0.91403 1.00000 0.95508 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_52178 - ID 711 Forward for Sequence contig_52178 - ID 711 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4505 4 0 0 Non Coding 4603 4 4 4 UTR 6 85 3 0 Phase 0 4 121 0 0 Coding 3 10 372 0 Phase 1 3 0 121 0 Intron 0 0 0 0 Phase 2 3 0 0 121 Precision Recall F1 Precision Recall F1 Intergenic 0.99801 0.99911 0.99856 Non Coding 0.99783 0.99740 0.99762 UTR 0.85859 0.90426 0.88083 Phase 0 0.96800 0.96800 0.96800 Coding 0.99200 0.96623 0.97895 Phase 1 0.96800 0.97581 0.97189 Intron NaN NaN NaN Phase 2 0.96800 0.97581 0.97189 Subgenic 0.99200 0.96623 0.97895 Coding 0.96800 0.97319 0.97059 Genic 0.96414 0.95407 0.95908 Reverse for Sequence contig_52178 - ID 711 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4988 0 0 0 Non Coding 4988 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_52193 - ID 712 Forward for Sequence contig_52193 - ID 712 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8257 0 0 0 Non Coding 8258 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 3 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99964 1.00000 0.99982 Non Coding 0.99976 1.00000 0.99988 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_52193 - ID 712 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4623 4 0 0 Non Coding 6883 5 6 2 UTR 4 211 3 8 Phase 0 5 450 0 0 Coding 0 1 1360 24 Phase 1 3 0 449 0 Intron 1 1 2 2018 Phase 2 4 0 0 453 Precision Recall F1 Precision Recall F1 Intergenic 0.99892 0.99914 0.99903 Non Coding 0.99826 0.99811 0.99819 UTR 0.97235 0.93363 0.95260 Phase 0 0.98901 0.98901 0.98901 Coding 0.99634 0.98195 0.98909 Phase 1 0.98681 0.99336 0.99008 Intron 0.98439 0.99802 0.99116 Phase 2 0.99560 0.99125 0.99342 Subgenic 0.98917 0.99149 0.99033 Coding 0.99048 0.99120 0.99084 Genic 0.98816 0.98789 0.98802 BP_Extractor for Sequence contig_52341 - ID 713 Forward for Sequence contig_52341 - ID 713 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4934 0 0 0 Non Coding 5858 2 5 2 UTR 2 306 1 0 Phase 0 2 565 0 0 Coding 0 1 1691 4 Phase 1 1 0 562 0 Intron 0 0 9 615 Phase 2 1 0 0 565 Precision Recall F1 Precision Recall F1 Intergenic 0.99959 1.00000 0.99980 Non Coding 0.99932 0.99847 0.99889 UTR 0.99674 0.99029 0.99351 Phase 0 0.99647 0.99647 0.99647 Coding 0.99412 0.99705 0.99558 Phase 1 0.99118 0.99822 0.99469 Intron 0.99354 0.98558 0.98954 Phase 2 0.99647 0.99823 0.99735 Subgenic 0.99397 0.99397 0.99397 Coding 0.99471 0.99764 0.99617 Genic 0.99429 0.99353 0.99391 Reverse for Sequence contig_52341 - ID 713 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7563 0 0 0 Non Coding 7563 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_52426 - ID 714 Forward for Sequence contig_52426 - ID 714 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7945 0 0 0 Non Coding 7957 0 0 0 UTR 10 0 0 0 Phase 0 4 0 0 0 Coding 14 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99699 1.00000 0.99849 Non Coding 0.99849 1.00000 0.99925 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_52426 - ID 714 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7908 0 0 0 Non Coding 7946 0 0 0 UTR 15 0 0 0 Phase 0 6 0 0 0 Coding 30 0 0 0 Phase 1 9 0 0 0 Intron 16 0 0 0 Phase 2 8 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99235 1.00000 0.99616 Non Coding 0.99711 1.00000 0.99855 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_52492 - ID 715 Forward for Sequence contig_52492 - ID 715 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5168 0 0 0 Non Coding 5255 0 0 0 UTR 30 0 0 0 Phase 0 291 0 0 0 Coding 923 0 0 0 Phase 1 290 0 0 0 Intron 6 0 0 0 Phase 2 291 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84348 1.00000 0.91510 Non Coding 0.85768 1.00000 0.92339 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_52492 - ID 715 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5491 0 0 0 Non Coding 5936 0 0 0 UTR 89 0 0 0 Phase 0 64 0 0 0 Coding 354 0 0 0 Phase 1 64 0 0 0 Intron 193 0 0 0 Phase 2 63 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89620 1.00000 0.94526 Non Coding 0.96883 1.00000 0.98417 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_52515 - ID 716 Forward for Sequence contig_52515 - ID 716 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2268 0 0 0 Non Coding 2268 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_52515 - ID 716 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1372 0 0 0 Non Coding 1957 23 13 21 UTR 0 24 1 5 Phase 0 1 80 0 0 Coding 0 2 294 0 Phase 1 0 0 90 0 Intron 207 1 14 348 Phase 2 1 0 0 82 Precision Recall F1 Precision Recall F1 Intergenic 0.86890 1.00000 0.92985 Non Coding 0.99898 0.97170 0.98515 UTR 0.88889 0.80000 0.84211 Phase 0 0.77670 0.98765 0.86957 Coding 0.95146 0.99324 0.97190 Phase 1 0.87379 1.00000 0.93264 Intron 0.98584 0.61053 0.75406 Phase 2 0.79612 0.98795 0.88172 Subgenic 0.96979 0.74134 0.84031 Coding 0.81553 0.99213 0.89520 Genic 0.96662 0.74330 0.84038 BP_Extractor for Sequence contig_52581 - ID 717 Forward for Sequence contig_52581 - ID 717 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1005 0 0 0 Non Coding 3445 6 5 6 UTR 1 121 4 0 Phase 0 1 233 1 0 Coding 0 0 710 6 Phase 1 1 0 234 1 Intron 1 1 6 2314 Phase 2 2 1 0 233 Precision Recall F1 Precision Recall F1 Intergenic 0.99801 1.00000 0.99901 Non Coding 0.99884 0.99509 0.99696 UTR 0.99180 0.96032 0.97581 Phase 0 0.97083 0.99149 0.98105 Coding 0.98611 0.99162 0.98886 Phase 1 0.97500 0.99153 0.98319 Intron 0.99741 0.99655 0.99698 Phase 2 0.97083 0.98729 0.97899 Subgenic 0.99474 0.99539 0.99506 Coding 0.97222 0.99010 0.98108 Genic 0.99462 0.99399 0.99431 Reverse for Sequence contig_52581 - ID 717 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4169 0 0 0 Non Coding 4169 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_52659 - ID 718 Forward for Sequence contig_52659 - ID 718 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5246 0 0 0 Non Coding 5233 0 0 0 UTR 8 0 0 0 Phase 0 82 0 0 0 Coding 242 0 0 0 Phase 1 94 0 0 0 Intron 0 0 0 0 Phase 2 87 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95451 1.00000 0.97673 Non Coding 0.95215 1.00000 0.97549 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_52659 - ID 718 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5486 0 0 0 Non Coding 5482 0 0 0 UTR 0 0 0 0 Phase 0 4 0 0 0 Coding 10 0 0 0 Phase 1 5 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99818 1.00000 0.99909 Non Coding 0.99745 1.00000 0.99872 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_52663 - ID 719 Forward for Sequence contig_52663 - ID 719 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6309 39 0 7 Non Coding 9148 19 22 25 UTR 11 149 8 2 Phase 0 2 256 0 0 Coding 31 0 811 3 Phase 1 4 0 253 0 Intron 13 33 6 2560 Phase 2 3 0 0 250 Precision Recall F1 Precision Recall F1 Intergenic 0.99136 0.99276 0.99206 Non Coding 0.99902 0.99284 0.99592 UTR 0.67421 0.87647 0.76215 Phase 0 0.93091 0.99225 0.96060 Coding 0.98303 0.95976 0.97126 Phase 1 0.92000 0.98444 0.95113 Intron 0.99533 0.98009 0.98765 Phase 2 0.90909 0.98814 0.94697 Subgenic 0.99235 0.97512 0.98366 Coding 0.92000 0.98828 0.95292 Genic 0.97291 0.97050 0.97170 Reverse for Sequence contig_52663 - ID 719 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9508 0 0 0 Non Coding 9581 0 0 0 UTR 74 0 0 0 Phase 0 134 0 0 0 Coding 400 0 0 0 Phase 1 133 0 0 0 Intron 0 0 0 0 Phase 2 134 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95251 1.00000 0.97568 Non Coding 0.95983 1.00000 0.97950 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_52738 - ID 720 Forward for Sequence contig_52738 - ID 720 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9623 0 0 0 Non Coding 9623 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99990 1.00000 0.99995 Non Coding 0.99990 1.00000 0.99995 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_52738 - ID 720 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6249 1 0 0 Non Coding 7126 4 6 3 UTR 44 158 10 0 Phase 0 286 543 0 0 Coding 942 0 1630 0 Phase 1 289 0 541 0 Intron 13 1 1 575 Phase 2 282 0 0 544 Precision Recall F1 Precision Recall F1 Intergenic 0.86217 0.99984 0.92591 Non Coding 0.89265 0.99818 0.94247 UTR 0.98750 0.74528 0.84946 Phase 0 0.99269 0.65501 0.78924 Coding 0.99330 0.63375 0.77380 Phase 1 0.98903 0.65181 0.78577 Intron 1.00000 0.97458 0.98712 Phase 2 0.99452 0.65860 0.79243 Subgenic 0.99504 0.69734 0.82001 Coding 0.99208 0.65513 0.78914 Genic 0.99453 0.70036 0.82191 BP_Extractor for Sequence contig_52746 - ID 721 Forward for Sequence contig_52746 - ID 721 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3244 0 0 0 Non Coding 3244 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_52746 - ID 721 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1049 0 0 25 Non Coding 2104 0 0 0 UTR 3 18 0 4 Phase 0 7 375 0 0 Coding 7 15 1124 1 Phase 1 4 0 374 0 Intron 106 1 0 891 Phase 2 5 0 0 375 Precision Recall F1 Precision Recall F1 Intergenic 0.90043 0.97672 0.93703 Non Coding 0.99245 1.00000 0.99621 UTR 0.52941 0.72000 0.61017 Phase 0 1.00000 0.98168 0.99075 Coding 1.00000 0.97995 0.98987 Phase 1 1.00000 0.98942 0.99468 Intron 0.96743 0.89279 0.92861 Phase 2 1.00000 0.98684 0.99338 Subgenic 0.98533 0.93939 0.96181 Coding 1.00000 0.98596 0.99293 Genic 0.97787 0.93687 0.95693 BP_Extractor for Sequence contig_52879 - ID 722 Forward for Sequence contig_52879 - ID 722 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2964 0 0 0 Non Coding 2971 0 0 0 UTR 7 0 0 0 Phase 0 2 0 0 0 Coding 8 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99496 1.00000 0.99748 Non Coding 0.99731 1.00000 0.99866 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_52879 - ID 722 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1986 5 0 0 Non Coding 2337 7 10 7 UTR 0 166 0 0 Phase 0 3 205 0 0 Coding 0 6 636 2 Phase 1 1 0 202 0 Intron 0 0 0 178 Phase 2 2 0 0 205 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99749 0.99874 Non Coding 0.99744 0.98983 0.99362 UTR 0.93785 1.00000 0.96793 Phase 0 0.96698 0.98558 0.97619 Coding 1.00000 0.98758 0.99375 Phase 1 0.95283 0.99507 0.97349 Intron 0.98889 1.00000 0.99441 Phase 2 0.96698 0.99034 0.97852 Subgenic 0.99755 0.99027 0.99389 Coding 0.96226 0.99029 0.97608 Genic 0.98691 0.99190 0.98940 BP_Extractor for Sequence contig_52935 - ID 723 Forward for Sequence contig_52935 - ID 723 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13344 0 0 0 Non Coding 13352 0 0 0 UTR 6 0 0 0 Phase 0 1 0 0 0 Coding 8 0 0 0 Phase 1 3 0 0 0 Intron 1 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99888 1.00000 0.99944 Non Coding 0.99948 1.00000 0.99974 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_52935 - ID 723 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13359 0 0 0 Non Coding 13359 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_52957 - ID 724 Forward for Sequence contig_52957 - ID 724 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3276 0 0 0 Non Coding 3323 0 0 0 UTR 41 0 0 0 Phase 0 85 0 0 0 Coding 265 0 0 0 Phase 1 87 0 0 0 Intron 0 0 0 0 Phase 2 87 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91457 1.00000 0.95538 Non Coding 0.92769 1.00000 0.96249 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_52957 - ID 724 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3581 0 0 0 Non Coding 3579 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99972 1.00000 0.99986 Non Coding 0.99916 1.00000 0.99958 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_53133 - ID 725 Forward for Sequence contig_53133 - ID 725 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3960 0 0 0 Non Coding 3960 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_53133 - ID 725 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2487 3 0 0 Non Coding 3308 2 2 3 UTR 9 206 0 7 Phase 0 2 213 0 0 Coding 0 0 644 7 Phase 1 3 0 213 0 Intron 2 0 1 594 Phase 2 2 0 0 212 Precision Recall F1 Precision Recall F1 Intergenic 0.99560 0.99880 0.99719 Non Coding 0.99789 0.99789 0.99789 UTR 0.98565 0.92793 0.95592 Phase 0 0.99070 0.99070 0.99070 Coding 0.99845 0.98925 0.99383 Phase 1 0.99070 0.98611 0.98840 Intron 0.97697 0.99497 0.98589 Phase 2 0.98605 0.99065 0.98834 Subgenic 0.98803 0.99199 0.99000 Coding 0.98915 0.98915 0.98915 Genic 0.98769 0.98231 0.98499 BP_Extractor for Sequence contig_53258 - ID 726 Forward for Sequence contig_53258 - ID 726 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3858 0 0 0 Non Coding 4128 0 0 0 UTR 53 0 0 0 Phase 0 252 0 0 0 Coding 977 0 0 0 Phase 1 256 0 0 0 Intron 5 0 0 0 Phase 2 257 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.78847 1.00000 0.88173 Non Coding 0.84365 1.00000 0.91520 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_53258 - ID 726 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4322 0 0 0 Non Coding 4462 0 0 0 UTR 104 0 0 0 Phase 0 144 0 0 0 Coding 461 0 0 0 Phase 1 144 0 0 0 Intron 6 0 0 0 Phase 2 143 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88330 1.00000 0.93804 Non Coding 0.91191 1.00000 0.95393 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_53279 - ID 727 Forward for Sequence contig_53279 - ID 727 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5373 0 0 0 Non Coding 5380 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 11 0 0 0 Phase 1 3 0 0 0 Intron 5 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99703 1.00000 0.99851 Non Coding 0.99833 1.00000 0.99916 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_53279 - ID 727 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4826 0 0 0 Non Coding 4889 0 0 0 UTR 47 0 0 0 Phase 0 168 0 0 0 Coding 509 0 0 0 Phase 1 165 0 0 0 Intron 7 0 0 0 Phase 2 167 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89553 1.00000 0.94488 Non Coding 0.90722 1.00000 0.95135 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_53294 - ID 728 Forward for Sequence contig_53294 - ID 728 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6703 0 0 0 Non Coding 6703 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_53294 - ID 728 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6681 0 0 0 Non Coding 6688 0 0 0 UTR 2 0 0 0 Phase 0 5 0 0 0 Coding 20 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99672 1.00000 0.99836 Non Coding 0.99776 1.00000 0.99888 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_53321 - ID 729 Forward for Sequence contig_53321 - ID 729 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6797 0 63 101 Non Coding 7581 99 92 96 UTR 15 39 7 2 Phase 0 14 610 0 0 Coding 106 3 2028 34 Phase 1 25 0 617 0 Intron 17 2 29 524 Phase 2 20 0 0 613 Precision Recall F1 Precision Recall F1 Intergenic 0.98010 0.97644 0.97827 Non Coding 0.99228 0.96352 0.97769 UTR 0.88636 0.61905 0.72897 Phase 0 0.86037 0.97756 0.91523 Coding 0.95346 0.93413 0.94369 Phase 1 0.87024 0.96106 0.91340 Intron 0.79274 0.91608 0.84996 Phase 2 0.86460 0.96840 0.91356 Subgenic 0.91535 0.93037 0.92280 Coding 0.86507 0.96893 0.91406 Genic 0.91490 0.92338 0.91912 Reverse for Sequence contig_53321 - ID 729 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9738 0 0 0 Non Coding 9747 0 0 0 UTR 7 0 0 0 Phase 0 7 0 0 0 Coding 22 0 0 0 Phase 1 7 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99703 1.00000 0.99851 Non Coding 0.99795 1.00000 0.99898 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_53333 - ID 730 Forward for Sequence contig_53333 - ID 730 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16784 0 0 0 Non Coding 16800 0 0 0 UTR 10 0 0 0 Phase 0 31 0 0 0 Coding 87 0 0 0 Phase 1 21 0 0 0 Intron 0 0 0 0 Phase 2 29 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99425 1.00000 0.99712 Non Coding 0.99520 1.00000 0.99760 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_53333 - ID 730 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16876 0 0 0 Non Coding 16878 0 0 0 UTR 2 0 0 0 Phase 0 1 0 0 0 Coding 3 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99970 1.00000 0.99985 Non Coding 0.99982 1.00000 0.99991 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_53334 - ID 731 Forward for Sequence contig_53334 - ID 731 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4334 0 0 0 Non Coding 4342 0 0 0 UTR 4 0 0 0 Phase 0 3 0 0 0 Coding 10 0 0 0 Phase 1 2 0 0 0 Intron 3 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99609 1.00000 0.99804 Non Coding 0.99793 1.00000 0.99896 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_53334 - ID 731 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4351 0 0 0 Non Coding 4351 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_53375 - ID 732 Forward for Sequence contig_53375 - ID 732 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6115 7 0 0 Non Coding 6794 8 8 11 UTR 153 110 11 5 Phase 0 6 404 0 0 Coding 40 0 1224 9 Phase 1 9 0 404 0 Intron 0 0 1 379 Phase 2 9 0 0 401 Precision Recall F1 Precision Recall F1 Intergenic 0.96940 0.99886 0.98391 Non Coding 0.99648 0.99604 0.99626 UTR 0.94017 0.39427 0.55556 Phase 0 0.98058 0.98537 0.98297 Coding 0.99029 0.96151 0.97569 Phase 1 0.98058 0.97821 0.97939 Intron 0.96438 0.99737 0.98060 Phase 2 0.97330 0.97805 0.97567 Subgenic 0.98404 0.96975 0.97684 Coding 0.97816 0.98054 0.97934 Genic 0.98110 0.88665 0.93148 Reverse for Sequence contig_53375 - ID 732 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6815 1 22 169 Non Coding 7150 64 49 56 UTR 12 32 8 8 Phase 0 6 228 0 4 Coding 13 15 853 20 Phase 1 7 3 243 0 Intron 0 0 2 84 Phase 2 6 0 3 235 Precision Recall F1 Precision Recall F1 Intergenic 0.99635 0.97260 0.98433 Non Coding 0.99735 0.97691 0.98702 UTR 0.66667 0.53333 0.59259 Phase 0 0.77288 0.95798 0.85553 Coding 0.96384 0.94673 0.95521 Phase 1 0.82373 0.96047 0.88686 Intron 0.29893 0.97674 0.45777 Phase 2 0.79661 0.96311 0.87199 Subgenic 0.80360 0.94934 0.87041 Coding 0.79774 0.96054 0.87160 Genic 0.79819 0.92550 0.85714 BP_Extractor for Sequence contig_53508 - ID 733 Forward for Sequence contig_53508 - ID 733 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6490 0 0 0 Non Coding 6490 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_53508 - ID 733 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6490 0 0 0 Non Coding 6490 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_53606 - ID 734 Forward for Sequence contig_53606 - ID 734 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3884 0 0 0 Non Coding 3884 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_53606 - ID 734 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1973 0 0 13 Non Coding 2699 39 55 50 UTR 2 271 4 6 Phase 0 2 354 0 0 Coding 1 0 1169 14 Phase 1 2 0 338 0 Intron 0 0 6 425 Phase 2 2 0 0 343 Precision Recall F1 Precision Recall F1 Intergenic 0.99848 0.99345 0.99596 Non Coding 0.99778 0.94935 0.97296 UTR 1.00000 0.95760 0.97834 Phase 0 0.90076 0.99438 0.94526 Coding 0.99152 0.98733 0.98942 Phase 1 0.86005 0.99412 0.92224 Intron 0.92795 0.98608 0.95613 Phase 2 0.87277 0.99420 0.92954 Subgenic 0.97373 0.98700 0.98032 Coding 0.87786 0.99424 0.93243 Genic 0.97746 0.98261 0.98003 BP_Extractor for Sequence contig_53641 - ID 735 Forward for Sequence contig_53641 - ID 735 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3449 0 0 0 Non Coding 3448 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99971 1.00000 0.99986 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN Reverse for Sequence contig_53641 - ID 735 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3449 0 0 0 Non Coding 3449 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_53675 - ID 736 Forward for Sequence contig_53675 - ID 736 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2857 0 0 0 Non Coding 2857 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_53675 - ID 736 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2857 0 0 0 Non Coding 2857 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_54018 - ID 737 Forward for Sequence contig_54018 - ID 737 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6182 0 0 0 Non Coding 6180 0 0 0 UTR 3 0 0 0 Phase 0 3 0 0 0 Coding 2 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99919 1.00000 0.99960 Non Coding 0.99887 1.00000 0.99943 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_54018 - ID 737 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6187 0 0 0 Non Coding 6187 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_54434 - ID 738 Forward for Sequence contig_54434 - ID 738 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14390 0 0 0 Non Coding 14447 0 0 0 UTR 27 0 0 0 Phase 0 27 0 0 0 Coding 101 0 0 0 Phase 1 23 0 0 0 Intron 9 0 0 0 Phase 2 30 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99057 1.00000 0.99526 Non Coding 0.99449 1.00000 0.99724 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_54434 - ID 738 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13278 0 0 0 Non Coding 13973 8 11 7 UTR 4 189 10 0 Phase 0 1 176 0 0 Coding 3 0 540 6 Phase 1 1 0 173 0 Intron 0 0 2 495 Phase 2 0 0 0 177 Precision Recall F1 Precision Recall F1 Intergenic 0.99947 1.00000 0.99974 Non Coding 0.99986 0.99814 0.99900 UTR 1.00000 0.93103 0.96429 Phase 0 0.95652 0.99435 0.97507 Coding 0.97826 0.98361 0.98093 Phase 1 0.94022 0.99425 0.96648 Intron 0.98802 0.99598 0.99198 Phase 2 0.96196 1.00000 0.98061 Subgenic 0.98291 0.98948 0.98618 Coding 0.95290 0.99621 0.97407 Genic 0.98551 0.97998 0.98274 BP_Extractor for Sequence contig_54608 - ID 739 Forward for Sequence contig_54608 - ID 739 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5144 0 0 0 Non Coding 5144 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_54608 - ID 739 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1022 0 0 0 Non Coding 2773 26 32 36 UTR 2 144 44 26 Phase 0 16 742 0 3 Coding 0 0 2244 56 Phase 1 18 5 737 0 Intron 2 4 31 1569 Phase 2 18 0 4 734 Precision Recall F1 Precision Recall F1 Intergenic 0.99610 1.00000 0.99805 Non Coding 0.98159 0.96721 0.97435 UTR 0.97297 0.66667 0.79121 Phase 0 0.95990 0.97503 0.96741 Coding 0.96766 0.97565 0.97164 Phase 1 0.95343 0.96974 0.96151 Intron 0.95033 0.97696 0.96346 Phase 2 0.94955 0.97090 0.96010 Subgenic 0.96045 0.97619 0.96826 Coding 0.95429 0.97189 0.96301 Genic 0.96090 0.95997 0.96044 BP_Extractor for Sequence contig_54710 - ID 740 Forward for Sequence contig_54710 - ID 740 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9175 0 0 0 Non Coding 10994 0 0 0 UTR 244 0 0 0 Phase 0 862 0 0 0 Coding 3540 0 0 0 Phase 1 847 0 0 0 Intron 586 0 0 0 Phase 2 842 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.67737 1.00000 0.80766 Non Coding 0.81166 1.00000 0.89604 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_54710 - ID 740 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11033 7 24 13 Non Coding 11330 123 151 155 UTR 9 142 12 1 Phase 0 11 604 0 0 Coding 12 16 2118 12 Phase 1 12 0 576 0 Intron 4 4 27 111 Phase 2 11 0 0 572 Precision Recall F1 Precision Recall F1 Intergenic 0.99774 0.99603 0.99688 Non Coding 0.99701 0.96352 0.97998 UTR 0.84024 0.86585 0.85285 Phase 0 0.83081 0.98211 0.90015 Coding 0.97111 0.98146 0.97626 Phase 1 0.79230 0.97959 0.87605 Intron 0.81022 0.76027 0.78445 Phase 2 0.78680 0.98113 0.87328 Subgenic 0.96160 0.96745 0.96452 Coding 0.80330 0.98096 0.88329 Genic 0.95336 0.96070 0.95701 BP_Extractor for Sequence contig_54794 - ID 741 Forward for Sequence contig_54794 - ID 741 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3666 0 0 0 Non Coding 3677 0 0 0 UTR 6 0 0 0 Phase 0 0 0 0 0 Coding 6 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99674 1.00000 0.99837 Non Coding 0.99973 1.00000 0.99986 UTR NaN 0.00000 0.00000 Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_54794 - ID 741 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3678 0 0 0 Non Coding 3678 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_54805 - ID 742 Forward for Sequence contig_54805 - ID 742 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4727 0 0 0 Non Coding 4727 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_54805 - ID 742 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4727 0 0 0 Non Coding 4727 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_54921 - ID 743 Forward for Sequence contig_54921 - ID 743 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7454 0 0 0 Non Coding 7454 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_54921 - ID 743 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7454 0 0 0 Non Coding 7454 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_54931 - ID 744 Forward for Sequence contig_54931 - ID 744 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5563 0 0 0 Non Coding 5563 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_54931 - ID 744 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4304 0 0 6 Non Coding 5132 3 4 6 UTR 8 78 0 0 Phase 0 5 134 0 0 Coding 11 13 411 1 Phase 1 7 0 133 0 Intron 73 1 0 657 Phase 2 8 0 0 131 Precision Recall F1 Precision Recall F1 Intergenic 0.97907 0.99861 0.98874 Non Coding 0.99612 0.99747 0.99680 UTR 0.84783 0.90698 0.87640 Phase 0 0.97810 0.96403 0.97101 Coding 1.00000 0.94266 0.97048 Phase 1 0.97080 0.95000 0.96029 Intron 0.98946 0.89877 0.94194 Phase 2 0.95620 0.94245 0.94928 Subgenic 0.99349 0.91517 0.95272 Coding 0.96837 0.95215 0.96019 Genic 0.98201 0.91460 0.94711 BP_Extractor for Sequence contig_54937 - ID 745 Forward for Sequence contig_54937 - ID 745 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4954 0 0 0 Non Coding 4953 0 0 0 UTR 9 0 0 0 Phase 0 8 0 0 0 Coding 29 0 0 0 Phase 1 10 0 0 0 Intron 0 0 0 0 Phase 2 21 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99239 1.00000 0.99618 Non Coding 0.99219 1.00000 0.99608 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_54937 - ID 745 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3876 0 0 0 Non Coding 4003 0 0 0 UTR 37 0 0 0 Phase 0 328 0 0 0 Coding 1074 0 0 0 Phase 1 333 0 0 0 Intron 5 0 0 0 Phase 2 328 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.77644 1.00000 0.87415 Non Coding 0.80188 1.00000 0.89005 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_54994 - ID 746 Forward for Sequence contig_54994 - ID 746 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8434 0 0 0 Non Coding 8434 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_54994 - ID 746 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8321 0 0 0 Non Coding 8363 0 0 0 UTR 17 0 0 0 Phase 0 21 0 0 0 Coding 91 0 0 0 Phase 1 28 0 0 0 Intron 5 0 0 0 Phase 2 22 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98660 1.00000 0.99326 Non Coding 0.99158 1.00000 0.99577 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_55087 - ID 747 Forward for Sequence contig_55087 - ID 747 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16911 0 0 0 Non Coding 17013 0 0 0 UTR 43 0 0 0 Phase 0 293 0 0 0 Coding 924 0 0 0 Phase 1 289 0 0 0 Intron 5 0 0 0 Phase 2 288 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94565 1.00000 0.97206 Non Coding 0.95135 1.00000 0.97507 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_55087 - ID 747 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13054 7 0 0 Non Coding 14174 32 47 43 UTR 79 231 25 0 Phase 0 305 843 48 0 Coding 1324 14 2739 9 Phase 1 318 0 829 45 Intron 141 0 9 251 Phase 2 313 50 0 836 Precision Recall F1 Precision Recall F1 Intergenic 0.89423 0.99946 0.94392 Non Coding 0.93805 0.99147 0.96402 UTR 0.91667 0.68955 0.78705 Phase 0 0.91135 0.70485 0.79491 Coding 0.98774 0.67034 0.79866 Phase 1 0.89719 0.69547 0.78355 Intron 0.96538 0.62594 0.75946 Phase 2 0.90476 0.69725 0.78756 Subgenic 0.98582 0.66637 0.79521 Coding 0.90444 0.69919 0.78868 Genic 0.98052 0.66798 0.79462 BP_Extractor for Sequence contig_55447 - ID 748 Forward for Sequence contig_55447 - ID 748 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3367 0 0 0 Non Coding 3363 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 4 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99881 1.00000 0.99941 Non Coding 0.99763 1.00000 0.99881 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_55447 - ID 748 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3371 0 0 0 Non Coding 3371 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_55668 - ID 749 Forward for Sequence contig_55668 - ID 749 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11940 0 0 0 Non Coding 11945 0 0 0 UTR 6 0 0 0 Phase 0 6 0 0 0 Coding 20 0 0 0 Phase 1 7 0 0 0 Intron 0 0 0 0 Phase 2 8 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99783 1.00000 0.99891 Non Coding 0.99825 1.00000 0.99912 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_55668 - ID 749 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10213 1 18 30 Non Coding 11019 66 62 65 UTR 11 95 8 1 Phase 0 4 243 2 0 Coding 16 2 896 3 Phase 1 4 0 247 2 Intron 4 0 11 657 Phase 2 6 2 0 244 Precision Recall F1 Precision Recall F1 Intergenic 0.99697 0.99523 0.99610 Non Coding 0.99873 0.98279 0.99069 UTR 0.96939 0.82609 0.89202 Phase 0 0.78135 0.97590 0.86786 Coding 0.96034 0.97710 0.96865 Phase 1 0.79421 0.97628 0.87589 Intron 0.95080 0.97768 0.96405 Phase 2 0.78457 0.96825 0.86679 Subgenic 0.95628 0.97734 0.96670 Coding 0.78671 0.97347 0.87018 Genic 0.95703 0.96714 0.96205 BP_Extractor for Sequence contig_55672 - ID 750 Forward for Sequence contig_55672 - ID 750 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1673 0 0 0 Non Coding 1853 0 0 0 UTR 57 0 0 0 Phase 0 298 0 0 0 Coding 1013 0 0 0 Phase 1 298 0 0 0 Intron 0 0 0 0 Phase 2 294 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.60992 1.00000 0.75770 Non Coding 0.67554 1.00000 0.80635 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_55672 - ID 750 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2743 0 0 0 Non Coding 2743 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_55734 - ID 751 Forward for Sequence contig_55734 - ID 751 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3769 0 0 0 Non Coding 3806 0 0 0 UTR 19 0 0 0 Phase 0 34 0 0 0 Coding 107 0 0 0 Phase 1 35 0 0 0 Intron 11 0 0 0 Phase 2 31 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96493 1.00000 0.98215 Non Coding 0.97440 1.00000 0.98703 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_55734 - ID 751 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3906 0 0 0 Non Coding 3906 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_55916 - ID 752 Forward for Sequence contig_55916 - ID 752 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10800 0 0 0 Non Coding 11009 2 2 4 UTR 17 198 0 0 Phase 0 10 160 0 0 Coding 16 0 486 0 Phase 1 6 0 160 0 Intron 0 0 0 0 Phase 2 6 0 0 158 Precision Recall F1 Precision Recall F1 Intergenic 0.99695 1.00000 0.99847 Non Coding 0.99801 0.99927 0.99864 UTR 1.00000 0.92093 0.95884 Phase 0 0.98765 0.94118 0.96386 Coding 1.00000 0.96813 0.98381 Phase 1 0.98765 0.96386 0.97561 Intron NaN NaN NaN Phase 2 0.97531 0.96341 0.96933 Subgenic 1.00000 0.96813 0.98381 Coding 0.98354 0.95600 0.96957 Genic 1.00000 0.95397 0.97645 Reverse for Sequence contig_55916 - ID 752 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8897 0 0 75 Non Coding 10971 2 2 2 UTR 4 31 0 0 Phase 0 2 178 0 0 Coding 7 6 539 1 Phase 1 2 0 178 0 Intron 771 52 1 1133 Phase 2 2 0 0 178 Precision Recall F1 Precision Recall F1 Intergenic 0.91921 0.99164 0.95405 Non Coding 0.99945 0.99945 0.99945 UTR 0.34831 0.88571 0.50000 Phase 0 0.98889 0.98889 0.98889 Coding 0.99815 0.97468 0.98628 Phase 1 0.98889 0.98889 0.98889 Intron 0.93714 0.57895 0.71573 Phase 2 0.98889 0.98889 0.98889 Subgenic 0.95597 0.66614 0.78516 Coding 0.98889 0.98889 0.98889 Genic 0.92655 0.66916 0.77709 BP_Extractor for Sequence contig_56093 - ID 753 Forward for Sequence contig_56093 - ID 753 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3991 0 0 0 Non Coding 4076 0 0 0 UTR 27 0 0 0 Phase 0 143 0 0 0 Coding 475 0 0 0 Phase 1 139 0 0 0 Intron 5 0 0 0 Phase 2 140 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88728 1.00000 0.94028 Non Coding 0.90618 1.00000 0.95078 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_56093 - ID 753 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4498 0 0 0 Non Coding 4498 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_56220 - ID 754 Forward for Sequence contig_56220 - ID 754 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2694 0 0 0 Non Coding 2694 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_56220 - ID 754 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2694 0 0 0 Non Coding 2694 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_56457 - ID 755 Forward for Sequence contig_56457 - ID 755 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12039 0 2 40 Non Coding 12375 15 16 16 UTR 28 122 3 0 Phase 0 180 227 0 0 Coding 436 0 721 1 Phase 1 167 0 226 0 Intron 4 0 0 234 Phase 2 182 0 0 226 Precision Recall F1 Precision Recall F1 Intergenic 0.96258 0.99652 0.97926 Non Coding 0.95900 0.99622 0.97726 UTR 1.00000 0.79739 0.88727 Phase 0 0.93802 0.55774 0.69954 Coding 0.99311 0.62263 0.76539 Phase 1 0.93388 0.57506 0.71181 Intron 0.85091 0.98319 0.91228 Phase 2 0.93388 0.55392 0.69538 Subgenic 0.95405 0.68410 0.79683 Coding 0.93526 0.56209 0.70217 Genic 0.95904 0.69529 0.80614 Reverse for Sequence contig_56457 - ID 755 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11728 11 0 0 Non Coding 11928 69 43 50 UTR 31 97 5 0 Phase 0 6 491 0 0 Coding 64 9 1675 0 Phase 1 8 0 517 0 Intron 10 0 0 0 Phase 2 8 0 0 510 Precision Recall F1 Precision Recall F1 Intergenic 0.99113 0.99906 0.99508 Non Coding 0.99816 0.98660 0.99235 UTR 0.82906 0.72932 0.77600 Phase 0 0.87679 0.98793 0.92904 Coding 0.99702 0.95824 0.97725 Phase 1 0.92321 0.98476 0.95300 Intron NaN 0.00000 0.00000 Phase 2 0.91071 0.98456 0.94620 Subgenic 0.99702 0.95279 0.97440 Coding 0.90357 0.98571 0.94286 Genic 0.98609 0.93707 0.96095 BP_Extractor for Sequence contig_56527 - ID 756 Forward for Sequence contig_56527 - ID 756 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6213 0 0 0 Non Coding 6213 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_56527 - ID 756 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5739 0 0 0 Non Coding 6031 0 0 0 UTR 31 0 0 0 Phase 0 55 0 0 0 Coding 343 0 0 0 Phase 1 68 0 0 0 Intron 100 0 0 0 Phase 2 59 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92371 1.00000 0.96034 Non Coding 0.97071 1.00000 0.98514 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_56817 - ID 757 Forward for Sequence contig_56817 - ID 757 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9984 0 37 240 Non Coding 10522 29 22 27 UTR 23 95 17 0 Phase 0 13 346 0 0 Coding 50 5 1067 1 Phase 1 19 0 353 0 Intron 24 1 4 152 Phase 2 21 0 0 348 Precision Recall F1 Precision Recall F1 Intergenic 0.99038 0.97300 0.98161 Non Coding 0.99499 0.99264 0.99381 UTR 0.94059 0.70370 0.80508 Phase 0 0.92267 0.96379 0.94278 Coding 0.94844 0.95013 0.94929 Phase 1 0.94133 0.94892 0.94511 Intron 0.38677 0.83978 0.52962 Phase 2 0.92800 0.94309 0.93548 Subgenic 0.80303 0.93482 0.86393 Coding 0.93067 0.95182 0.94112 Genic 0.81161 0.91313 0.85939 Reverse for Sequence contig_56817 - ID 757 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11700 0 0 0 Non Coding 11700 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_56823 - ID 758 Forward for Sequence contig_56823 - ID 758 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3450 0 0 0 Non Coding 3478 0 0 0 UTR 9 0 0 0 Phase 0 17 0 0 0 Coding 62 0 0 0 Phase 1 13 0 0 0 Intron 0 0 0 0 Phase 2 13 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97984 1.00000 0.98981 Non Coding 0.98779 1.00000 0.99386 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_56823 - ID 758 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3521 0 0 0 Non Coding 3521 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_56960 - ID 759 Forward for Sequence contig_56960 - ID 759 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12766 13 17 308 Non Coding 15811 97 104 108 UTR 24 144 26 6 Phase 0 30 607 0 0 Coding 64 12 2057 14 Phase 1 29 0 600 0 Intron 15 1 12 2534 Phase 2 31 0 0 596 Precision Recall F1 Precision Recall F1 Intergenic 0.99200 0.97421 0.98302 Non Coding 0.99434 0.98083 0.98754 UTR 0.84706 0.72000 0.77838 Phase 0 0.86222 0.95290 0.90529 Coding 0.97396 0.95808 0.96595 Phase 1 0.85227 0.95390 0.90023 Intron 0.88539 0.98907 0.93437 Phase 2 0.84659 0.95056 0.89557 Subgenic 0.92300 0.97494 0.94826 Coding 0.85369 0.95246 0.90037 Genic 0.92049 0.96455 0.94201 Reverse for Sequence contig_56960 - ID 759 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 16791 14 0 0 Non Coding 17488 26 12 22 UTR 11 600 9 0 Phase 0 4 145 0 0 Coding 8 7 504 0 Phase 1 4 0 159 0 Intron 0 0 0 69 Phase 2 4 0 0 149 Precision Recall F1 Precision Recall F1 Intergenic 0.99887 0.99917 0.99902 Non Coding 0.99931 0.99658 0.99795 UTR 0.96618 0.96774 0.96696 Phase 0 0.84795 0.97315 0.90625 Coding 0.98246 0.97110 0.97674 Phase 1 0.92982 0.97546 0.95210 Intron 1.00000 1.00000 1.00000 Phase 2 0.87135 0.97386 0.91975 Subgenic 0.98454 0.97449 0.97949 Coding 0.88304 0.97419 0.92638 Genic 0.97506 0.97103 0.97304 BP_Extractor for Sequence contig_56974 - ID 760 Forward for Sequence contig_56974 - ID 760 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3116 1 31 0 Non Coding 4704 122 134 144 UTR 51 64 18 0 Phase 0 25 453 0 0 Coding 71 14 1667 53 Phase 1 24 0 441 0 Intron 17 5 9 1388 Phase 2 27 0 0 431 Precision Recall F1 Precision Recall F1 Intergenic 0.95730 0.98983 0.97329 Non Coding 0.98410 0.92163 0.95184 UTR 0.76190 0.48120 0.58986 Phase 0 0.78783 0.94770 0.86040 Coding 0.96638 0.92355 0.94448 Phase 1 0.76696 0.94839 0.84808 Intron 0.96322 0.97815 0.97063 Phase 2 0.74957 0.94105 0.83446 Subgenic 0.96494 0.94758 0.95618 Coding 0.76812 0.94575 0.84773 Genic 0.95969 0.92910 0.94415 Reverse for Sequence contig_56974 - ID 760 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6505 0 0 0 Non Coding 6505 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_57056 - ID 761 Forward for Sequence contig_57056 - ID 761 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9559 12 0 2 Non Coding 11597 6 8 7 UTR 1 142 7 10 Phase 0 6 566 0 0 Coding 0 4 1705 19 Phase 1 3 0 564 0 Intron 0 0 4 1861 Phase 2 4 0 0 565 Precision Recall F1 Precision Recall F1 Intergenic 0.99990 0.99854 0.99922 Non Coding 0.99888 0.99819 0.99854 UTR 0.89873 0.88750 0.89308 Phase 0 0.98951 0.98951 0.98951 Coding 0.99359 0.98669 0.99013 Phase 1 0.98601 0.99471 0.99034 Intron 0.98362 0.99786 0.99068 Phase 2 0.98776 0.99297 0.99036 Subgenic 0.98836 0.99249 0.99042 Coding 0.98776 0.99239 0.99007 Genic 0.98460 0.98801 0.98630 Reverse for Sequence contig_57056 - ID 761 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12721 0 0 0 Non Coding 12791 0 0 0 UTR 67 0 0 0 Phase 0 178 0 0 0 Coding 537 0 0 0 Phase 1 179 0 0 0 Intron 1 0 0 0 Phase 2 178 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95460 1.00000 0.97677 Non Coding 0.95985 1.00000 0.97952 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_57099 - ID 762 Forward for Sequence contig_57099 - ID 762 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15157 0 0 0 Non Coding 15157 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_57099 - ID 762 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8450 1 2 216 Non Coding 14326 89 83 91 UTR 1 111 0 0 Phase 0 22 168 0 0 Coding 140 0 765 5 Phase 1 21 0 174 0 Intron 455 1 4 5006 Phase 2 17 0 0 166 Precision Recall F1 Precision Recall F1 Intergenic 0.93411 0.97474 0.95399 Non Coding 0.99583 0.98197 0.98885 UTR 0.98230 0.99107 0.98667 Phase 0 0.65370 0.88421 0.75168 Coding 0.99222 0.84066 0.91017 Phase 1 0.67704 0.89231 0.76991 Intron 0.95772 0.91584 0.93631 Phase 2 0.64591 0.90710 0.75455 Subgenic 0.96215 0.90511 0.93276 Coding 0.65888 0.89437 0.75878 Genic 0.96253 0.90660 0.93372 BP_Extractor for Sequence contig_57166 - ID 763 Forward for Sequence contig_57166 - ID 763 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 15839 2 0 0 Non Coding 22369 116 120 120 UTR 28 147 6 10 Phase 0 40 575 5 2 Coding 13 15 2044 184 Phase 1 38 2 570 4 Intron 0 2 44 6240 Phase 2 33 5 3 572 Precision Recall F1 Precision Recall F1 Intergenic 0.99742 0.99987 0.99864 Non Coding 0.99506 0.98433 0.98967 UTR 0.88554 0.76963 0.82353 Phase 0 0.82378 0.92444 0.87121 Coding 0.97612 0.90603 0.93977 Phase 1 0.81662 0.92834 0.86890 Intron 0.96985 0.99268 0.98113 Phase 2 0.81948 0.93312 0.87262 Subgenic 0.97139 0.96980 0.97059 Coding 0.81996 0.92861 0.87091 Genic 0.96975 0.96542 0.96758 Reverse for Sequence contig_57166 - ID 763 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 21901 0 10 290 Non Coding 23117 48 47 40 UTR 15 152 6 6 Phase 0 8 427 0 6 Coding 22 1 1410 9 Phase 1 7 3 427 0 Intron 5 0 8 739 Phase 2 8 0 4 432 Precision Recall F1 Precision Recall F1 Intergenic 0.99809 0.98649 0.99225 Non Coding 0.99901 0.99419 0.99659 UTR 0.99346 0.84916 0.91566 Phase 0 0.89331 0.96825 0.92927 Coding 0.98326 0.97781 0.98053 Phase 1 0.89331 0.97712 0.93333 Intron 0.70785 0.98271 0.82294 Phase 2 0.90377 0.97297 0.93709 Subgenic 0.86723 0.97949 0.91995 Coding 0.89679 0.97277 0.93324 Genic 0.87457 0.96966 0.91966 BP_Extractor for Sequence contig_57167 - ID 764 Forward for Sequence contig_57167 - ID 764 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4486 0 0 0 Non Coding 4493 0 0 0 UTR 13 0 0 0 Phase 0 10 0 0 0 Coding 25 0 0 0 Phase 1 10 0 0 0 Intron 0 0 0 0 Phase 2 11 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99160 1.00000 0.99578 Non Coding 0.99315 1.00000 0.99656 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_57167 - ID 764 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4276 0 0 0 Non Coding 4299 0 0 0 UTR 5 8 0 0 Phase 0 0 75 0 0 Coding 2 0 225 0 Phase 1 0 0 75 0 Intron 7 1 0 0 Phase 2 0 0 0 75 Precision Recall F1 Precision Recall F1 Intergenic 0.99674 1.00000 0.99837 Non Coding 1.00000 1.00000 1.00000 UTR 0.88889 0.61538 0.72727 Phase 0 1.00000 1.00000 1.00000 Coding 1.00000 0.99119 0.99558 Phase 1 1.00000 1.00000 1.00000 Intron NaN 0.00000 0.00000 Phase 2 1.00000 1.00000 1.00000 Subgenic 1.00000 0.95745 0.97826 Coding 1.00000 1.00000 1.00000 Genic 0.99573 0.93952 0.96680 BP_Extractor for Sequence contig_57209 - ID 765 Forward for Sequence contig_57209 - ID 765 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9326 0 0 0 Non Coding 9702 0 0 0 UTR 103 0 0 0 Phase 0 302 0 0 0 Coding 1114 0 0 0 Phase 1 287 0 0 0 Intron 53 0 0 0 Phase 2 305 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88014 1.00000 0.93625 Non Coding 0.91563 1.00000 0.95596 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_57209 - ID 765 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9252 0 0 0 Non Coding 10147 0 0 0 UTR 42 0 0 0 Phase 0 129 0 0 0 Coding 1286 0 0 0 Phase 1 169 0 0 0 Intron 16 0 0 0 Phase 2 151 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.87316 1.00000 0.93229 Non Coding 0.95763 1.00000 0.97835 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_57274 - ID 766 Forward for Sequence contig_57274 - ID 766 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3152 3 0 0 Non Coding 4913 0 0 0 UTR 0 511 0 0 Phase 0 2 205 0 0 Coding 0 0 615 4 Phase 1 1 0 205 0 Intron 1 25 0 1221 Phase 2 1 0 0 205 Precision Recall F1 Precision Recall F1 Intergenic 0.99968 0.99905 0.99937 Non Coding 0.99919 1.00000 0.99959 UTR 0.94805 1.00000 0.97333 Phase 0 1.00000 0.99034 0.99515 Coding 1.00000 0.99354 0.99676 Phase 1 1.00000 0.99515 0.99757 Intron 0.99673 0.97915 0.98786 Phase 2 1.00000 0.99515 0.99757 Subgenic 0.99783 0.98392 0.99083 Coding 1.00000 0.99354 0.99676 Genic 0.98655 0.98738 0.98696 Reverse for Sequence contig_57274 - ID 766 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5067 0 0 0 Non Coding 5152 0 0 0 UTR 5 0 0 0 Phase 0 128 0 0 0 Coding 439 0 0 0 Phase 1 125 0 0 0 Intron 21 0 0 0 Phase 2 127 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91594 1.00000 0.95613 Non Coding 0.93131 1.00000 0.96443 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_57296 - ID 767 Forward for Sequence contig_57296 - ID 767 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5931 0 0 0 Non Coding 5931 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_57296 - ID 767 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5931 0 0 0 Non Coding 5931 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_57322 - ID 768 Forward for Sequence contig_57322 - ID 768 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4062 21 4 0 Non Coding 5649 50 59 55 UTR 57 537 4 5 Phase 0 12 945 0 0 Coding 107 15 2948 37 Phase 1 16 0 936 0 Intron 0 3 29 849 Phase 2 16 0 0 940 Precision Recall F1 Precision Recall F1 Intergenic 0.96119 0.99388 0.97726 Non Coding 0.99227 0.97179 0.98192 UTR 0.93229 0.89055 0.91094 Phase 0 0.94975 0.98746 0.96824 Coding 0.98760 0.94883 0.96783 Phase 1 0.94070 0.98319 0.96148 Intron 0.95286 0.96368 0.95824 Phase 2 0.94472 0.98326 0.96361 Subgenic 0.97962 0.95211 0.96567 Coding 0.94506 0.98464 0.96444 Genic 0.97350 0.94402 0.95853 Reverse for Sequence contig_57322 - ID 768 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7466 2 0 0 Non Coding 7591 2 2 1 UTR 12 99 0 0 Phase 0 3 358 0 0 Coding 8 11 1080 0 Phase 1 2 0 358 0 Intron 0 0 0 0 Phase 2 2 0 0 359 Precision Recall F1 Precision Recall F1 Intergenic 0.99733 0.99973 0.99853 Non Coding 0.99908 0.99934 0.99921 UTR 0.88393 0.89189 0.88789 Phase 0 0.99444 0.99169 0.99307 Coding 1.00000 0.98271 0.99128 Phase 1 0.99444 0.99444 0.99444 Intron NaN NaN NaN Phase 2 0.99722 0.99446 0.99584 Subgenic 1.00000 0.98271 0.99128 Coding 0.99537 0.99353 0.99445 Genic 0.98909 0.97438 0.98168 BP_Extractor for Sequence contig_57364 - ID 769 Forward for Sequence contig_57364 - ID 769 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4190 0 0 0 Non Coding 4190 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_57364 - ID 769 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3858 0 0 0 Non Coding 4042 0 0 0 UTR 129 0 0 0 Phase 0 48 0 0 0 Coding 203 0 0 0 Phase 1 51 0 0 0 Intron 0 0 0 0 Phase 2 49 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92076 1.00000 0.95875 Non Coding 0.96468 1.00000 0.98202 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_57462 - ID 770 Forward for Sequence contig_57462 - ID 770 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4878 0 0 0 Non Coding 4878 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_57462 - ID 770 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4434 0 0 0 Non Coding 4771 0 0 0 UTR 21 0 0 0 Phase 0 36 0 0 0 Coding 235 0 0 0 Phase 1 39 0 0 0 Intron 188 0 0 0 Phase 2 32 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90898 1.00000 0.95232 Non Coding 0.97806 1.00000 0.98891 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_57677 - ID 771 Forward for Sequence contig_57677 - ID 771 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5513 0 0 0 Non Coding 5518 0 0 0 UTR 6 0 0 0 Phase 0 9 0 0 0 Coding 25 0 0 0 Phase 1 8 0 0 0 Intron 0 0 0 0 Phase 2 9 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99441 1.00000 0.99720 Non Coding 0.99531 1.00000 0.99765 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_57677 - ID 771 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5544 0 0 0 Non Coding 5544 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_57692 - ID 772 Forward for Sequence contig_57692 - ID 772 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2490 0 0 0 Non Coding 2490 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_57692 - ID 772 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2490 0 0 0 Non Coding 2490 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_57788 - ID 773 Forward for Sequence contig_57788 - ID 773 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12290 0 0 0 Non Coding 12306 0 0 0 UTR 12 0 0 0 Phase 0 5 0 0 0 Coding 17 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99765 1.00000 0.99882 Non Coding 0.99894 1.00000 0.99947 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_57788 - ID 773 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11505 0 0 0 Non Coding 12138 0 0 0 UTR 26 0 0 0 Phase 0 63 0 0 0 Coding 253 0 0 0 Phase 1 61 0 0 0 Intron 535 0 0 0 Phase 2 57 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93392 1.00000 0.96583 Non Coding 0.98531 1.00000 0.99260 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_57951 - ID 774 Forward for Sequence contig_57951 - ID 774 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8805 0 0 0 Non Coding 8805 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_57951 - ID 774 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8503 0 0 0 Non Coding 8505 0 0 0 UTR 23 0 0 0 Phase 0 98 0 0 0 Coding 278 0 0 0 Phase 1 101 0 0 0 Intron 1 0 0 0 Phase 2 101 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96570 1.00000 0.98255 Non Coding 0.96593 1.00000 0.98267 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_57970 - ID 775 Forward for Sequence contig_57970 - ID 775 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2574 0 0 0 Non Coding 2574 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_57970 - ID 775 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2574 0 0 0 Non Coding 2574 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_58053 - ID 776 Forward for Sequence contig_58053 - ID 776 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6915 0 0 0 Non Coding 6915 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_58053 - ID 776 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6183 0 0 0 Non Coding 6436 0 0 0 UTR 29 0 0 0 Phase 0 165 0 0 0 Coding 681 0 0 0 Phase 1 174 0 0 0 Intron 22 0 0 0 Phase 2 140 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89414 1.00000 0.94411 Non Coding 0.93073 1.00000 0.96412 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_58072 - ID 777 Forward for Sequence contig_58072 - ID 777 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8336 0 0 0 Non Coding 8537 0 0 0 UTR 187 0 0 0 Phase 0 152 0 0 0 Coding 459 0 0 0 Phase 1 149 0 0 0 Intron 4 0 0 0 Phase 2 148 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92767 1.00000 0.96248 Non Coding 0.95003 1.00000 0.97438 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_58072 - ID 777 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7204 10 0 0 Non Coding 7605 2 1 2 UTR 10 202 1 8 Phase 0 3 454 0 0 Coding 8 0 1367 13 Phase 1 6 0 455 0 Intron 24 1 0 138 Phase 2 4 0 0 454 Precision Recall F1 Precision Recall F1 Intergenic 0.99420 0.99861 0.99640 Non Coding 0.99829 0.99934 0.99882 UTR 0.94836 0.91403 0.93088 Phase 0 0.99561 0.99344 0.99452 Coding 0.99927 0.98487 0.99202 Phase 1 0.99781 0.98698 0.99237 Intron 0.86792 0.84663 0.85714 Phase 2 0.99561 0.99127 0.99344 Subgenic 0.98559 0.97034 0.97791 Coding 0.99635 0.99055 0.99344 Genic 0.98103 0.96332 0.97210 BP_Extractor for Sequence contig_58156 - ID 778 Forward for Sequence contig_58156 - ID 778 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5587 9 0 0 Non Coding 6104 4 6 5 UTR 0 166 9 0 Phase 0 0 186 0 0 Coding 0 2 561 0 Phase 1 1 0 184 0 Intron 0 0 0 342 Phase 2 1 0 0 185 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99839 0.99920 Non Coding 0.99967 0.99755 0.99861 UTR 0.93785 0.94857 0.94318 Phase 0 0.97895 1.00000 0.98936 Coding 0.98421 0.99645 0.99029 Phase 1 0.96842 0.99459 0.98133 Intron 1.00000 1.00000 1.00000 Phase 2 0.97368 0.99462 0.98404 Subgenic 0.99013 0.99779 0.99395 Coding 0.97368 0.99641 0.98492 Genic 0.98163 0.98981 0.98571 Reverse for Sequence contig_58156 - ID 778 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5323 1 0 0 Non Coding 6155 3 10 4 UTR 17 80 4 0 Phase 0 14 159 0 0 Coding 41 6 481 0 Phase 1 8 0 152 0 Intron 37 0 1 685 Phase 2 13 0 0 158 Precision Recall F1 Precision Recall F1 Intergenic 0.98247 0.99981 0.99106 Non Coding 0.99435 0.99725 0.99579 UTR 0.91954 0.79208 0.85106 Phase 0 0.98148 0.91908 0.94925 Coding 0.98971 0.91098 0.94872 Phase 1 0.93827 0.95000 0.94410 Intron 1.00000 0.94744 0.97301 Phase 2 0.97531 0.92398 0.94895 Subgenic 0.99573 0.93205 0.96284 Coding 0.96502 0.93056 0.94747 Genic 0.99046 0.92160 0.95479 BP_Extractor for Sequence contig_58184 - ID 779 Forward for Sequence contig_58184 - ID 779 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3798 0 0 0 Non Coding 3798 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_58184 - ID 779 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3798 0 0 0 Non Coding 3798 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_58333 - ID 780 Forward for Sequence contig_58333 - ID 780 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3057 1 4 11 Non Coding 3304 3 4 3 UTR 0 66 1 11 Phase 0 0 263 0 0 Coding 0 2 792 1 Phase 1 1 0 262 0 Intron 16 0 1 141 Phase 2 1 0 0 263 Precision Recall F1 Precision Recall F1 Intergenic 0.99479 0.99479 0.99479 Non Coding 0.99940 0.99698 0.99819 UTR 0.95652 0.84615 0.89796 Phase 0 0.98872 1.00000 0.99433 Coding 0.99248 0.99623 0.99435 Phase 1 0.98496 0.99620 0.99055 Intron 0.85976 0.89241 0.87578 Phase 2 0.98872 0.99621 0.99245 Subgenic 0.96985 0.97901 0.97441 Coding 0.98747 0.99747 0.99244 Genic 0.96896 0.96896 0.96896 Reverse for Sequence contig_58333 - ID 780 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1621 0 0 0 Non Coding 3350 1 0 2 UTR 2 295 2 0 Phase 0 8 241 0 1 Coding 1 14 728 30 Phase 1 7 2 243 0 Intron 0 0 2 1409 Phase 2 7 0 1 241 Precision Recall F1 Precision Recall F1 Intergenic 0.99815 1.00000 0.99908 Non Coding 0.99348 0.99911 0.99628 UTR 0.95469 0.98662 0.97039 Phase 0 0.98770 0.96400 0.97571 Coding 0.99454 0.94179 0.96744 Phase 1 0.99590 0.96429 0.97984 Intron 0.97915 0.99858 0.98877 Phase 2 0.98770 0.96787 0.97769 Subgenic 0.98434 0.97848 0.98140 Coding 0.99044 0.96538 0.97775 Genic 0.98065 0.97946 0.98005 BP_Extractor for Sequence contig_58387 - ID 781 Forward for Sequence contig_58387 - ID 781 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2323 0 4 14 Non Coding 6846 40 39 33 UTR 0 213 8 3 Phase 0 3 392 0 1 Coding 0 1 1241 20 Phase 1 5 0 393 0 Intron 0 0 43 4284 Phase 2 4 0 0 398 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99231 0.99614 Non Coding 0.99825 0.98390 0.99102 UTR 0.99533 0.95089 0.97260 Phase 0 0.90741 0.98990 0.94686 Coding 0.95756 0.98336 0.97029 Phase 1 0.90972 0.98744 0.94699 Intron 0.99144 0.99006 0.99075 Phase 2 0.92130 0.99005 0.95444 Subgenic 0.98362 0.98855 0.98608 Coding 0.91281 0.98913 0.94944 Genic 0.98405 0.98710 0.98557 Reverse for Sequence contig_58387 - ID 781 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8116 0 0 0 Non Coding 8122 0 0 0 UTR 8 0 0 0 Phase 0 11 0 0 0 Coding 28 0 0 0 Phase 1 10 0 0 0 Intron 2 0 0 0 Phase 2 11 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99534 1.00000 0.99766 Non Coding 0.99608 1.00000 0.99803 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_58422 - ID 782 Forward for Sequence contig_58422 - ID 782 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5397 0 0 0 Non Coding 5681 0 0 0 UTR 49 0 0 0 Phase 0 249 0 0 0 Coding 950 0 0 0 Phase 1 254 0 0 0 Intron 44 0 0 0 Phase 2 256 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.83804 1.00000 0.91189 Non Coding 0.88214 1.00000 0.93738 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_58422 - ID 782 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3184 10 0 0 Non Coding 5058 16 17 20 UTR 849 504 2 33 Phase 0 20 424 0 0 Coding 48 32 1304 6 Phase 1 21 0 423 0 Intron 13 10 14 431 Phase 2 21 0 0 420 Precision Recall F1 Precision Recall F1 Intergenic 0.77772 0.99687 0.87377 Non Coding 0.98789 0.98963 0.98876 UTR 0.90647 0.36311 0.51852 Phase 0 0.96364 0.95495 0.95928 Coding 0.98788 0.93813 0.96236 Phase 1 0.96136 0.95270 0.95701 Intron 0.91702 0.92094 0.91898 Phase 2 0.95455 0.95238 0.95346 Subgenic 0.96927 0.93380 0.95121 Coding 0.95985 0.95335 0.95659 Genic 0.95439 0.68977 0.80079 BP_Extractor for Sequence contig_58467 - ID 783 Forward for Sequence contig_58467 - ID 783 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6665 17 9 155 Non Coding 11031 62 72 74 UTR 13 211 20 14 Phase 0 11 662 3 0 Coding 6 5 2137 77 Phase 1 17 0 652 2 Intron 21 8 15 3880 Phase 2 13 3 0 651 Precision Recall F1 Precision Recall F1 Intergenic 0.99403 0.97356 0.98369 Non Coding 0.99630 0.98149 0.98884 UTR 0.87552 0.81783 0.84569 Phase 0 0.91059 0.97929 0.94369 Coding 0.97983 0.96045 0.97004 Phase 1 0.89684 0.97168 0.93276 Intron 0.94038 0.98879 0.96398 Phase 2 0.89546 0.97601 0.93400 Subgenic 0.95402 0.97853 0.96612 Coding 0.90096 0.97567 0.93683 Genic 0.95113 0.97206 0.96148 Reverse for Sequence contig_58467 - ID 783 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9728 0 0 0 Non Coding 10317 0 0 0 UTR 183 0 0 0 Phase 0 992 0 0 0 Coding 3250 0 0 0 Phase 1 965 0 0 0 Intron 92 0 0 0 Phase 2 979 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.73402 1.00000 0.84661 Non Coding 0.77847 1.00000 0.87543 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_58610 - ID 784 Forward for Sequence contig_58610 - ID 784 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6057 0 0 0 Non Coding 6056 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 3 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99950 1.00000 0.99975 Non Coding 0.99934 1.00000 0.99967 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_58610 - ID 784 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3238 1 0 0 Non Coding 4690 12 12 11 UTR 26 156 6 7 Phase 0 7 439 0 0 Coding 33 0 1342 24 Phase 1 5 0 439 0 Intron 48 2 5 1172 Phase 2 5 0 0 440 Precision Recall F1 Precision Recall F1 Intergenic 0.96801 0.99969 0.98360 Non Coding 0.99639 0.99259 0.99449 UTR 0.98113 0.80000 0.88136 Phase 0 0.97339 0.98430 0.97882 Coding 0.99187 0.95926 0.97529 Phase 1 0.97339 0.98874 0.98101 Intron 0.97423 0.95518 0.96461 Phase 2 0.97561 0.98876 0.98214 Subgenic 0.98357 0.95735 0.97028 Coding 0.97413 0.98727 0.98065 Genic 0.98343 0.94647 0.96460 BP_Extractor for Sequence contig_58655 - ID 785 Forward for Sequence contig_58655 - ID 785 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5411 0 0 0 Non Coding 5457 0 0 0 UTR 32 0 0 0 Phase 0 25 0 0 0 Coding 65 0 0 0 Phase 1 20 0 0 0 Intron 12 0 0 0 Phase 2 18 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98025 1.00000 0.99003 Non Coding 0.98859 1.00000 0.99426 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_58655 - ID 785 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5520 0 0 0 Non Coding 5520 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_58965 - ID 786 Forward for Sequence contig_58965 - ID 786 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6139 0 0 0 Non Coding 6302 0 0 0 UTR 67 0 0 0 Phase 0 18 0 0 0 Coding 141 0 0 0 Phase 1 15 0 0 0 Intron 2 0 0 0 Phase 2 14 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96692 1.00000 0.98318 Non Coding 0.99260 1.00000 0.99628 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_58965 - ID 786 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5663 0 0 0 Non Coding 5727 0 0 0 UTR 53 0 0 0 Phase 0 207 0 0 0 Coding 633 0 0 0 Phase 1 206 0 0 0 Intron 0 0 0 0 Phase 2 209 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.89195 1.00000 0.94289 Non Coding 0.90203 1.00000 0.94849 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_58995 - ID 787 Forward for Sequence contig_58995 - ID 787 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2805 0 0 0 Non Coding 2805 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_58995 - ID 787 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2805 0 0 0 Non Coding 2805 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_59173 - ID 788 Forward for Sequence contig_59173 - ID 788 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9602 1 0 0 Non Coding 9884 0 2 0 UTR 17 170 4 2 Phase 0 6 300 0 0 Coding 22 0 896 5 Phase 1 8 0 298 0 Intron 0 0 0 85 Phase 2 6 0 0 300 Precision Recall F1 Precision Recall F1 Intergenic 0.99595 0.99990 0.99792 Non Coding 0.99798 0.99980 0.99889 UTR 0.99415 0.88083 0.93407 Phase 0 1.00000 0.98039 0.99010 Coding 0.99556 0.97075 0.98300 Phase 1 0.99333 0.97386 0.98350 Intron 0.92391 1.00000 0.96045 Phase 2 1.00000 0.98039 0.99010 Subgenic 0.98891 0.97321 0.98100 Coding 0.99778 0.97821 0.98790 Genic 0.98968 0.95837 0.97377 Reverse for Sequence contig_59173 - ID 788 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10088 0 0 0 Non Coding 10215 0 0 0 UTR 105 0 0 0 Phase 0 195 0 0 0 Coding 599 0 0 0 Phase 1 197 0 0 0 Intron 12 0 0 0 Phase 2 197 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.93373 1.00000 0.96573 Non Coding 0.94548 1.00000 0.97198 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_59541 - ID 789 Forward for Sequence contig_59541 - ID 789 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9797 0 0 0 Non Coding 9797 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_59541 - ID 789 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8233 0 0 0 Non Coding 8661 2 1 3 UTR 11 308 3 0 Phase 0 5 372 0 0 Coding 17 3 1117 0 Phase 1 4 0 373 0 Intron 28 1 2 74 Phase 2 5 0 0 371 Precision Recall F1 Precision Recall F1 Intergenic 0.99324 1.00000 0.99661 Non Coding 0.99839 0.99931 0.99885 UTR 0.98718 0.95652 0.97161 Phase 0 0.99465 0.98674 0.99068 Coding 0.99554 0.98241 0.98893 Phase 1 0.99733 0.98939 0.99334 Intron 1.00000 0.70476 0.82682 Phase 2 0.99198 0.98670 0.98933 Subgenic 0.99582 0.95894 0.97703 Coding 0.99465 0.98761 0.99112 Genic 0.99403 0.95844 0.97591 BP_Extractor for Sequence contig_59682 - ID 790 Forward for Sequence contig_59682 - ID 790 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12780 0 0 0 Non Coding 12777 0 0 0 UTR 34 0 0 0 Phase 0 40 0 0 0 Coding 66 0 0 0 Phase 1 35 0 0 0 Intron 5 0 0 0 Phase 2 33 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99185 1.00000 0.99591 Non Coding 0.99162 1.00000 0.99579 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_59682 - ID 790 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9943 36 0 0 Non Coding 11663 27 31 33 UTR 40 254 11 17 Phase 0 132 251 0 0 Coding 486 3 823 12 Phase 1 131 0 247 0 Intron 827 5 0 428 Phase 2 125 0 0 245 Precision Recall F1 Precision Recall F1 Intergenic 0.88022 0.99639 0.93471 Non Coding 0.96780 0.99226 0.97988 UTR 0.85235 0.78882 0.81935 Phase 0 0.90288 0.65535 0.75946 Coding 0.98681 0.62160 0.76274 Phase 1 0.88849 0.65344 0.75305 Intron 0.93654 0.33968 0.49854 Phase 2 0.88129 0.66216 0.75617 Subgenic 0.96902 0.48413 0.64568 Coding 0.89089 0.65694 0.75623 Genic 0.94714 0.51789 0.66963 BP_Extractor for Sequence contig_59779 - ID 791 Forward for Sequence contig_59779 - ID 791 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2103 0 0 0 Non Coding 2429 0 0 0 UTR 88 0 0 0 Phase 0 68 0 0 0 Coding 379 0 0 0 Phase 1 64 0 0 0 Intron 56 0 0 0 Phase 2 65 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.80084 1.00000 0.88941 Non Coding 0.92498 1.00000 0.96103 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_59779 - ID 791 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2062 0 0 0 Non Coding 1961 0 0 0 UTR 23 0 0 0 Phase 0 230 0 0 0 Coding 534 0 0 0 Phase 1 222 0 0 0 Intron 7 0 0 0 Phase 2 213 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.78522 1.00000 0.87969 Non Coding 0.74676 1.00000 0.85503 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_59914 - ID 792 Forward for Sequence contig_59914 - ID 792 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3929 0 0 0 Non Coding 3929 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_59914 - ID 792 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1532 6 0 0 Non Coding 2583 5 5 5 UTR 9 743 3 0 Phase 0 5 438 0 0 Coding 0 18 1316 3 Phase 1 6 0 438 0 Intron 0 25 10 264 Phase 2 6 0 0 438 Precision Recall F1 Precision Recall F1 Intergenic 0.99416 0.99610 0.99513 Non Coding 0.99346 0.99423 0.99384 UTR 0.93813 0.98411 0.96057 Phase 0 0.98871 0.98871 0.98871 Coding 0.99022 0.98429 0.98725 Phase 1 0.98871 0.98649 0.98760 Intron 0.98876 0.88294 0.93286 Phase 2 0.98871 0.98649 0.98760 Subgenic 0.98997 0.96577 0.97772 Coding 0.98871 0.98723 0.98797 Genic 0.97278 0.97156 0.97217 BP_Extractor for Sequence contig_60119 - ID 793 Forward for Sequence contig_60119 - ID 793 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2513 0 0 0 Non Coding 2513 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_60119 - ID 793 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2513 0 0 0 Non Coding 2513 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_60185 - ID 794 Forward for Sequence contig_60185 - ID 794 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1162 1 0 0 Non Coding 1726 12 9 14 UTR 12 88 4 0 Phase 0 3 200 0 0 Coding 18 1 625 4 Phase 1 2 0 203 0 Intron 176 1 7 272 Phase 2 4 0 0 198 Precision Recall F1 Precision Recall F1 Intergenic 0.84942 0.99914 0.91821 Non Coding 0.99481 0.98012 0.98741 UTR 0.96703 0.84615 0.90256 Phase 0 0.94340 0.98522 0.96386 Coding 0.98270 0.96451 0.97352 Phase 1 0.95755 0.99024 0.97362 Intron 0.98551 0.59649 0.74317 Phase 2 0.93396 0.98020 0.95652 Subgenic 0.98355 0.81250 0.88988 Coding 0.94497 0.98525 0.96469 Genic 0.98205 0.81540 0.89100 Reverse for Sequence contig_60185 - ID 794 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2366 0 0 0 Non Coding 2368 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 5 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99789 1.00000 0.99894 Non Coding 0.99873 1.00000 0.99937 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_60409 - ID 795 Forward for Sequence contig_60409 - ID 795 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5441 0 0 0 Non Coding 5441 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_60409 - ID 795 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5281 0 0 0 Non Coding 5371 0 0 0 UTR 39 0 0 0 Phase 0 25 0 0 0 Coding 107 0 0 0 Phase 1 21 0 0 0 Intron 14 0 0 0 Phase 2 24 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97059 1.00000 0.98508 Non Coding 0.98713 1.00000 0.99353 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_60595 - ID 796 Forward for Sequence contig_60595 - ID 796 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 13025 0 0 0 Non Coding 13205 0 0 0 UTR 45 0 0 0 Phase 0 83 0 0 0 Coding 345 0 0 0 Phase 1 64 0 0 0 Intron 19 0 0 0 Phase 2 82 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96955 1.00000 0.98454 Non Coding 0.98295 1.00000 0.99140 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_60595 - ID 796 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10374 1 0 149 Non Coding 11903 6 6 6 UTR 19 365 6 1 Phase 0 14 492 0 0 Coding 36 11 1478 27 Phase 1 11 0 492 0 Intron 39 4 10 914 Phase 2 12 0 0 492 Precision Recall F1 Precision Recall F1 Intergenic 0.99102 0.98575 0.98838 Non Coding 0.99690 0.99849 0.99769 UTR 0.95801 0.93350 0.94560 Phase 0 0.98795 0.97233 0.98008 Coding 0.98929 0.95232 0.97045 Phase 1 0.98795 0.97813 0.98302 Intron 0.83776 0.94519 0.88824 Phase 2 0.98795 0.97619 0.98204 Subgenic 0.92534 0.94958 0.93730 Coding 0.98795 0.97555 0.98171 Genic 0.92953 0.94742 0.93839 BP_Extractor for Sequence contig_60965 - ID 797 Forward for Sequence contig_60965 - ID 797 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4656 0 0 0 Non Coding 4656 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_60965 - ID 797 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3510 4 2 0 Non Coding 3804 16 19 19 UTR 21 60 3 0 Phase 0 19 252 0 0 Coding 143 3 791 29 Phase 1 16 0 249 0 Intron 6 0 8 76 Phase 2 13 0 0 249 Precision Recall F1 Precision Recall F1 Intergenic 0.95380 0.99829 0.97554 Non Coding 0.98754 0.98600 0.98677 UTR 0.89552 0.71429 0.79470 Phase 0 0.94030 0.92989 0.93506 Coding 0.98383 0.81884 0.89379 Phase 1 0.92910 0.93962 0.93433 Intron 0.72381 0.84444 0.77949 Phase 2 0.92910 0.95038 0.93962 Subgenic 0.95380 0.82102 0.88244 Coding 0.93284 0.93985 0.93633 Genic 0.94980 0.81316 0.87618 BP_Extractor for Sequence contig_61058 - ID 798 Forward for Sequence contig_61058 - ID 798 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10104 2 0 0 Non Coding 10316 4 4 4 UTR 46 106 6 0 Phase 0 217 220 0 0 Coding 676 0 666 0 Phase 1 207 0 220 0 Intron 19 0 0 0 Phase 2 213 0 0 220 Precision Recall F1 Precision Recall F1 Intergenic 0.93167 0.99980 0.96454 Non Coding 0.94184 0.99884 0.96950 UTR 0.98148 0.67089 0.79699 Phase 0 0.98214 0.50343 0.66566 Coding 0.99107 0.49627 0.66137 Phase 1 0.98214 0.51522 0.67588 Intron NaN 0.00000 0.00000 Phase 2 0.98214 0.50808 0.66971 Subgenic 0.99107 0.48935 0.65519 Coding 0.98214 0.50887 0.67039 Genic 0.98974 0.50823 0.67160 Reverse for Sequence contig_61058 - ID 798 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10985 0 0 0 Non Coding 11077 0 0 0 UTR 28 0 0 0 Phase 0 186 0 0 0 Coding 610 0 0 0 Phase 1 178 0 0 0 Intron 2 0 0 0 Phase 2 184 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94495 1.00000 0.97169 Non Coding 0.95286 1.00000 0.97586 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_61199 - ID 799 Forward for Sequence contig_61199 - ID 799 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3528 0 0 0 Non Coding 3528 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_61199 - ID 799 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3528 0 0 0 Non Coding 3528 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_61294 - ID 800 Forward for Sequence contig_61294 - ID 800 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6564 0 0 0 Non Coding 6564 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_61294 - ID 800 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4012 0 0 0 Non Coding 5337 6 6 8 UTR 3 102 9 0 Phase 0 22 379 0 1 Coding 40 2 1147 42 Phase 1 23 1 379 0 Intron 508 0 2 697 Phase 2 24 0 1 377 Precision Recall F1 Precision Recall F1 Intergenic 0.87925 1.00000 0.93574 Non Coding 0.98724 0.99627 0.99173 UTR 0.98077 0.89474 0.93578 Phase 0 0.98187 0.94279 0.96193 Coding 0.99050 0.93176 0.96023 Phase 1 0.98187 0.94045 0.96071 Intron 0.94317 0.57746 0.71634 Phase 2 0.97668 0.93781 0.95685 Subgenic 0.97206 0.75636 0.85075 Coding 0.98014 0.94035 0.95983 Genic 0.97251 0.76254 0.85482 BP_Extractor for Sequence contig_61591 - ID 801 Forward for Sequence contig_61591 - ID 801 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5283 0 0 0 Non Coding 5283 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_61591 - ID 801 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4659 0 0 0 Non Coding 4936 0 0 0 UTR 14 0 0 0 Phase 0 106 0 0 0 Coding 600 0 0 0 Phase 1 123 0 0 0 Intron 10 0 0 0 Phase 2 118 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88189 1.00000 0.93724 Non Coding 0.93432 1.00000 0.96604 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_61715 - ID 802 Forward for Sequence contig_61715 - ID 802 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2328 0 0 0 Non Coding 2328 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_61715 - ID 802 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2308 0 0 0 Non Coding 2318 0 0 0 UTR 8 0 0 0 Phase 0 4 0 0 0 Coding 12 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99141 1.00000 0.99569 Non Coding 0.99570 1.00000 0.99785 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_61857 - ID 803 Forward for Sequence contig_61857 - ID 803 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8386 0 0 0 Non Coding 8646 0 0 0 UTR 98 0 0 0 Phase 0 186 0 0 0 Coding 702 0 0 0 Phase 1 190 0 0 0 Intron 20 0 0 0 Phase 2 184 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91093 1.00000 0.95339 Non Coding 0.93917 1.00000 0.96863 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_61857 - ID 803 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6894 0 0 0 Non Coding 7128 0 0 0 UTR 58 0 0 0 Phase 0 691 0 0 0 Coding 2165 0 0 0 Phase 1 693 0 0 0 Intron 89 0 0 0 Phase 2 694 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.74886 1.00000 0.85640 Non Coding 0.77428 1.00000 0.87278 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_61973 - ID 804 Forward for Sequence contig_61973 - ID 804 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2385 0 0 0 Non Coding 2385 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_61973 - ID 804 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2372 0 0 0 Non Coding 2378 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 13 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99455 1.00000 0.99727 Non Coding 0.99706 1.00000 0.99853 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_62227 - ID 805 Forward for Sequence contig_62227 - ID 805 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3809 2 0 0 Non Coding 3956 3 7 5 UTR 2 143 4 0 Phase 0 0 295 0 0 Coding 0 2 890 0 Phase 1 1 0 291 0 Intron 0 0 0 0 Phase 2 1 0 0 293 Precision Recall F1 Precision Recall F1 Intergenic 0.99948 0.99948 0.99948 Non Coding 0.99949 0.99622 0.99786 UTR 0.97279 0.95973 0.96622 Phase 0 0.98993 1.00000 0.99494 Coding 0.99553 0.99776 0.99664 Phase 1 0.97651 0.99658 0.98644 Intron NaN NaN NaN Phase 2 0.98322 0.99660 0.98986 Subgenic 0.99553 0.99776 0.99664 Coding 0.98322 0.99773 0.99042 Genic 0.99232 0.99232 0.99232 Reverse for Sequence contig_62227 - ID 805 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1655 4 82 0 Non Coding 3866 45 50 51 UTR 1 114 19 12 Phase 0 7 274 0 0 Coding 0 0 856 32 Phase 1 14 0 269 0 Intron 0 0 0 2077 Phase 2 8 0 0 268 Precision Recall F1 Precision Recall F1 Intergenic 0.99940 0.95060 0.97439 Non Coding 0.99255 0.96361 0.97787 UTR 0.96610 0.78082 0.86364 Phase 0 0.85893 0.97509 0.91333 Coding 0.89446 0.96396 0.92791 Phase 1 0.84326 0.95053 0.89369 Intron 0.97926 1.00000 0.98952 Phase 2 0.84013 0.97101 0.90084 Subgenic 0.95289 0.98921 0.97071 Coding 0.84744 0.96548 0.90262 Genic 0.95338 0.97943 0.96623 BP_Extractor for Sequence contig_62253 - ID 806 Forward for Sequence contig_62253 - ID 806 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2397 0 0 0 Non Coding 2623 0 0 0 UTR 107 0 0 0 Phase 0 81 0 0 0 Coding 284 0 0 0 Phase 1 75 0 0 0 Intron 75 0 0 0 Phase 2 84 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.83723 1.00000 0.91141 Non Coding 0.91617 1.00000 0.95625 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_62253 - ID 806 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1463 3 0 0 Non Coding 1953 1 0 1 UTR 24 413 1 0 Phase 0 3 299 0 0 Coding 0 4 898 11 Phase 1 3 0 300 0 Intron 0 6 1 39 Phase 2 4 0 0 299 Precision Recall F1 Precision Recall F1 Intergenic 0.98386 0.99795 0.99086 Non Coding 0.99491 0.99898 0.99694 UTR 0.96948 0.94292 0.95602 Phase 0 0.99667 0.99007 0.99336 Coding 0.99778 0.98357 0.99062 Phase 1 1.00000 0.99010 0.99502 Intron 0.78000 0.84783 0.81250 Phase 2 0.99667 0.98680 0.99171 Subgenic 0.98632 0.97706 0.98167 Coding 0.99778 0.98899 0.99336 Genic 0.98110 0.96636 0.97367 BP_Extractor for Sequence contig_62374 - ID 807 Forward for Sequence contig_62374 - ID 807 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2738 0 0 0 Non Coding 2738 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_62374 - ID 807 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1420 1 3 47 Non Coding 1655 8 8 8 UTR 17 35 21 69 Phase 0 12 340 0 0 Coding 32 0 1020 38 Phase 1 13 0 340 0 Intron 0 0 0 35 Phase 2 14 0 0 340 Precision Recall F1 Precision Recall F1 Intergenic 0.96664 0.96533 0.96599 Non Coding 0.97698 0.98571 0.98132 UTR 0.97222 0.24648 0.39326 Phase 0 0.97701 0.96591 0.97143 Coding 0.97701 0.93578 0.95595 Phase 1 0.97701 0.96317 0.97004 Intron 0.18519 1.00000 0.31250 Phase 2 0.97701 0.96045 0.96866 Subgenic 0.85564 0.93778 0.89483 Coding 0.97701 0.96317 0.97004 Genic 0.85894 0.86030 0.85962 BP_Extractor for Sequence contig_62419 - ID 808 Forward for Sequence contig_62419 - ID 808 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2582 0 0 0 Non Coding 2638 0 0 0 UTR 15 0 0 0 Phase 0 9 0 0 0 Coding 74 0 0 0 Phase 1 13 0 0 0 Intron 1 0 0 0 Phase 2 12 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96632 1.00000 0.98287 Non Coding 0.98728 1.00000 0.99360 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_62419 - ID 808 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2672 0 0 0 Non Coding 2672 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_62555 - ID 809 Forward for Sequence contig_62555 - ID 809 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4558 0 0 0 Non Coding 4558 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_62555 - ID 809 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2583 7 0 7 Non Coding 3801 1 0 0 UTR 2 234 1 2 Phase 0 4 248 0 0 Coding 0 9 746 2 Phase 1 4 0 249 0 Intron 1 0 0 964 Phase 2 2 0 0 249 Precision Recall F1 Precision Recall F1 Intergenic 0.99884 0.99461 0.99672 Non Coding 0.99738 0.99974 0.99856 UTR 0.93600 0.97908 0.95706 Phase 0 0.99598 0.98413 0.99002 Coding 0.99866 0.98547 0.99202 Phase 1 1.00000 0.98419 0.99203 Intron 0.98872 0.99896 0.99381 Phase 2 1.00000 0.99203 0.99600 Subgenic 0.99303 0.99303 0.99303 Coding 0.99866 0.98677 0.99268 Genic 0.98580 0.99133 0.98856 BP_Extractor for Sequence contig_62732 - ID 810 Forward for Sequence contig_62732 - ID 810 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3302 0 0 0 Non Coding 3309 0 0 0 UTR 4 0 0 0 Phase 0 4 0 0 0 Coding 15 0 0 0 Phase 1 5 0 0 0 Intron 1 0 0 0 Phase 2 4 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99398 1.00000 0.99698 Non Coding 0.99609 1.00000 0.99804 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_62732 - ID 810 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3322 0 0 0 Non Coding 3322 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_62741 - ID 811 Forward for Sequence contig_62741 - ID 811 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3924 0 0 0 Non Coding 3924 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_62741 - ID 811 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1973 0 0 0 Non Coding 3578 1 0 0 UTR 0 87 0 0 Phase 0 2 112 0 0 Coding 0 6 339 0 Phase 1 1 0 113 0 Intron 31 1 0 1487 Phase 2 4 0 0 113 Precision Recall F1 Precision Recall F1 Intergenic 0.98453 1.00000 0.99221 Non Coding 0.99805 0.99972 0.99888 UTR 0.92553 1.00000 0.96133 Phase 0 0.99115 0.98246 0.98678 Coding 1.00000 0.98261 0.99123 Phase 1 1.00000 0.99123 0.99559 Intron 1.00000 0.97893 0.98935 Phase 2 1.00000 0.96581 0.98261 Subgenic 1.00000 0.97961 0.98970 Coding 0.99705 0.97971 0.98830 Genic 0.99635 0.98052 0.98838 BP_Extractor for Sequence contig_62839 - ID 812 Forward for Sequence contig_62839 - ID 812 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4291 0 0 0 Non Coding 4291 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_62839 - ID 812 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4291 0 0 0 Non Coding 4291 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_62945 - ID 813 Forward for Sequence contig_62945 - ID 813 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6382 0 0 0 Non Coding 6381 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 5 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99922 1.00000 0.99961 Non Coding 0.99906 1.00000 0.99953 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_62945 - ID 813 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6387 0 0 0 Non Coding 6387 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_63063 - ID 814 Forward for Sequence contig_63063 - ID 814 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3485 1 0 0 Non Coding 4385 2 0 0 UTR 11 109 2 8 Phase 0 0 169 1 0 Coding 0 0 511 10 Phase 1 0 0 170 1 Intron 12 2 0 749 Phase 2 2 0 0 170 Precision Recall F1 Precision Recall F1 Intergenic 0.99344 0.99971 0.99657 Non Coding 0.99954 0.99954 0.99954 UTR 0.97321 0.83846 0.90083 Phase 0 0.98830 0.99412 0.99120 Coding 0.99610 0.98081 0.98839 Phase 1 0.99415 0.99415 0.99415 Intron 0.97653 0.98165 0.97908 Phase 2 0.99415 0.98837 0.99125 Subgenic 0.98438 0.98131 0.98284 Coding 0.99220 0.99220 0.99220 Genic 0.98348 0.96818 0.97577 Reverse for Sequence contig_63063 - ID 814 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4900 0 0 0 Non Coding 4900 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_63119 - ID 815 Forward for Sequence contig_63119 - ID 815 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2915 0 0 0 Non Coding 2915 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_63119 - ID 815 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 789 11 0 0 Non Coding 1949 28 29 32 UTR 2 47 14 0 Phase 0 2 292 0 0 Coding 38 3 939 4 Phase 1 3 0 290 0 Intron 245 0 7 816 Phase 2 1 0 1 288 Precision Recall F1 Precision Recall F1 Intergenic 0.73464 0.98625 0.84205 Non Coding 0.99693 0.95633 0.97621 UTR 0.77049 0.74603 0.75806 Phase 0 0.91250 0.99320 0.95114 Coding 0.97813 0.95427 0.96605 Phase 1 0.90625 0.98976 0.94617 Intron 0.99512 0.76404 0.86441 Phase 2 0.90000 0.99310 0.94426 Subgenic 0.98596 0.85526 0.91597 Coding 0.90625 0.99202 0.94720 Genic 0.97882 0.85201 0.91102 BP_Extractor for Sequence contig_63131 - ID 816 Forward for Sequence contig_63131 - ID 816 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3067 0 0 0 Non Coding 3636 19 22 19 UTR 47 73 2 0 Phase 0 207 406 0 0 Coding 866 2 1270 0 Phase 1 201 0 402 0 Intron 77 2 2 117 Phase 2 207 0 0 406 Precision Recall F1 Precision Recall F1 Intergenic 0.75598 1.00000 0.86103 Non Coding 0.85533 0.98377 0.91506 UTR 0.94805 0.59836 0.73367 Phase 0 0.95529 0.66232 0.78227 Coding 0.99686 0.59401 0.74443 Phase 1 0.94811 0.66667 0.78286 Intron 1.00000 0.59091 0.74286 Phase 2 0.95529 0.66232 0.78227 Subgenic 0.99712 0.59375 0.74430 Coding 0.95290 0.66375 0.78247 Genic 0.99455 0.59398 0.74376 Reverse for Sequence contig_63131 - ID 816 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3826 0 0 0 Non Coding 3992 0 0 0 UTR 137 0 0 0 Phase 0 510 0 0 0 Coding 1562 0 0 0 Phase 1 511 0 0 0 Intron 0 0 0 0 Phase 2 512 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.69249 1.00000 0.81831 Non Coding 0.72253 1.00000 0.83892 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_63188 - ID 817 Forward for Sequence contig_63188 - ID 817 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5513 0 0 0 Non Coding 5523 0 0 0 UTR 10 0 0 0 Phase 0 3 0 0 0 Coding 8 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99675 1.00000 0.99837 Non Coding 0.99855 1.00000 0.99928 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_63188 - ID 817 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1406 1 242 15 Non Coding 2038 325 320 325 UTR 22 43 21 7 Phase 0 16 816 0 0 Coding 152 3 3124 27 Phase 1 34 0 821 0 Intron 17 20 36 395 Phase 2 20 0 0 816 Precision Recall F1 Precision Recall F1 Intergenic 0.88040 0.84495 0.86231 Non Coding 0.96679 0.67753 0.79672 UTR 0.64179 0.46237 0.53750 Phase 0 0.71516 0.98077 0.82717 Coding 0.91265 0.94495 0.92852 Phase 1 0.71954 0.96023 0.82265 Intron 0.88964 0.84402 0.86623 Phase 2 0.71516 0.97608 0.82549 Subgenic 0.91001 0.93243 0.92108 Coding 0.71662 0.97226 0.82509 Genic 0.90544 0.92113 0.91322 BP_Extractor for Sequence contig_63298 - ID 818 Forward for Sequence contig_63298 - ID 818 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4370 0 0 0 Non Coding 4631 0 0 0 UTR 29 0 0 0 Phase 0 386 0 0 0 Coding 1323 0 0 0 Phase 1 378 0 0 0 Intron 60 0 0 0 Phase 2 387 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.75579 1.00000 0.86091 Non Coding 0.80093 1.00000 0.88947 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_63298 - ID 818 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2261 1 3 13 Non Coding 3825 57 58 54 UTR 0 60 13 7 Phase 0 2 593 0 0 Coding 0 0 1925 49 Phase 1 5 0 591 0 Intron 0 0 7 1443 Phase 2 2 0 0 595 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99254 0.99625 Non Coding 0.99765 0.95769 0.97726 UTR 0.98361 0.75000 0.85106 Phase 0 0.91231 0.99664 0.95261 Coding 0.98819 0.97518 0.98164 Phase 1 0.91063 0.99161 0.94940 Intron 0.95437 0.99517 0.97434 Phase 2 0.91680 0.99665 0.95506 Subgenic 0.97341 0.98364 0.97850 Coding 0.91324 0.99497 0.95236 Genic 0.97359 0.97831 0.97594 BP_Extractor for Sequence contig_63436 - ID 819 Forward for Sequence contig_63436 - ID 819 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5045 7 22 158 Non Coding 7534 21 20 21 UTR 15 138 6 1 Phase 0 2 209 3 0 Coding 14 0 663 7 Phase 1 2 0 209 2 Intron 7 0 5 2148 Phase 2 2 2 0 209 Precision Recall F1 Precision Recall F1 Intergenic 0.99291 0.96426 0.97838 Non Coding 0.99920 0.99184 0.99551 UTR 0.95172 0.86250 0.90492 Phase 0 0.90086 0.97664 0.93722 Coding 0.95259 0.96930 0.96087 Phase 1 0.90086 0.98122 0.93933 Intron 0.92826 0.99444 0.96021 Phase 2 0.90086 0.98122 0.93933 Subgenic 0.93389 0.98840 0.96037 Coding 0.90086 0.97969 0.93862 Genic 0.93471 0.98169 0.95762 Reverse for Sequence contig_63436 - ID 819 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8236 0 0 0 Non Coding 8236 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_63665 - ID 820 Forward for Sequence contig_63665 - ID 820 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3896 0 0 0 Non Coding 3896 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_63665 - ID 820 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2113 2 56 128 Non Coding 2492 42 36 42 UTR 1 29 3 16 Phase 0 1 425 0 0 Coding 4 0 1338 14 Phase 1 0 0 431 0 Intron 34 0 4 154 Phase 2 2 0 0 425 Precision Recall F1 Precision Recall F1 Intergenic 0.98188 0.91910 0.94945 Non Coding 0.99880 0.95406 0.97592 UTR 0.93548 0.59184 0.72500 Phase 0 0.91006 0.99765 0.95185 Coding 0.95503 0.98673 0.97062 Phase 1 0.92291 1.00000 0.95991 Intron 0.49359 0.80208 0.61111 Phase 2 0.91006 0.99532 0.95078 Subgenic 0.87099 0.96382 0.91506 Coding 0.91435 0.99766 0.95419 Genic 0.87213 0.95241 0.91051 BP_Extractor for Sequence contig_63762 - ID 821 Forward for Sequence contig_63762 - ID 821 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5629 0 0 0 Non Coding 5629 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_63762 - ID 821 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4872 2 0 0 Non Coding 5052 0 1 0 UTR 29 144 0 0 Phase 0 5 188 0 0 Coding 18 0 564 0 Phase 1 3 0 187 0 Intron 0 0 0 0 Phase 2 5 0 0 188 Precision Recall F1 Precision Recall F1 Intergenic 0.99045 0.99959 0.99500 Non Coding 0.99743 0.99980 0.99862 UTR 0.98630 0.83237 0.90282 Phase 0 1.00000 0.97409 0.98688 Coding 1.00000 0.96907 0.98429 Phase 1 0.99468 0.98421 0.98942 Intron NaN NaN NaN Phase 2 1.00000 0.97409 0.98688 Subgenic 1.00000 0.96907 0.98429 Coding 0.99823 0.97743 0.98772 Genic 0.99718 0.93775 0.96655 BP_Extractor for Sequence contig_63903 - ID 822 Forward for Sequence contig_63903 - ID 822 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7421 0 0 0 Non Coding 7421 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_63903 - ID 822 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 7421 0 0 0 Non Coding 7421 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_63992 - ID 823 Forward for Sequence contig_63992 - ID 823 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3807 0 0 0 Non Coding 3968 0 0 0 UTR 29 0 0 0 Phase 0 278 0 0 0 Coding 975 0 0 0 Phase 1 291 0 0 0 Intron 2 0 0 0 Phase 2 276 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.79098 1.00000 0.88329 Non Coding 0.82443 1.00000 0.90377 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_63992 - ID 823 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4813 0 0 0 Non Coding 4813 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_64026 - ID 824 Forward for Sequence contig_64026 - ID 824 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 14584 1 0 0 Non Coding 15077 7 9 6 UTR 96 65 4 0 Phase 0 327 96 0 0 Coding 1099 0 305 3 Phase 1 353 0 94 0 Intron 152 0 0 77 Phase 2 320 0 0 97 Precision Recall F1 Precision Recall F1 Intergenic 0.91545 0.99993 0.95583 Non Coding 0.93780 0.99854 0.96722 UTR 0.98485 0.39394 0.56277 Phase 0 0.93204 0.22695 0.36502 Coding 0.98706 0.21677 0.35548 Phase 1 0.91262 0.21029 0.34182 Intron 0.96250 0.33624 0.49838 Phase 2 0.94175 0.23261 0.37308 Subgenic 0.98201 0.23350 0.37728 Coding 0.92880 0.22300 0.35965 Genic 0.98242 0.24820 0.39628 Reverse for Sequence contig_64026 - ID 824 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12581 1 0 0 Non Coding 13870 1 4 5 UTR 164 262 0 0 Phase 0 379 461 0 0 Coding 1731 3 1386 0 Phase 1 377 0 458 0 Intron 258 0 0 0 Phase 2 374 0 0 457 Precision Recall F1 Precision Recall F1 Intergenic 0.85388 0.99992 0.92115 Non Coding 0.92467 0.99928 0.96053 UTR 0.98496 0.61502 0.75723 Phase 0 0.99784 0.54881 0.70814 Coding 1.00000 0.44423 0.61518 Phase 1 0.99134 0.54850 0.70625 Intron NaN 0.00000 0.00000 Phase 2 0.98918 0.54994 0.70688 Subgenic 1.00000 0.41030 0.58186 Coding 0.99278 0.54908 0.70709 Genic 0.99758 0.43323 0.60411 BP_Extractor for Sequence contig_64048 - ID 825 Forward for Sequence contig_64048 - ID 825 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3857 0 0 0 Non Coding 3857 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_64048 - ID 825 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3857 0 0 0 Non Coding 3857 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_64086 - ID 826 Forward for Sequence contig_64086 - ID 826 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4528 0 0 0 Non Coding 4528 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_64086 - ID 826 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4528 0 0 0 Non Coding 4528 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_64353 - ID 827 Forward for Sequence contig_64353 - ID 827 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3117 0 0 0 Non Coding 3117 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_64353 - ID 827 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3117 0 0 0 Non Coding 3117 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_64442 - ID 828 Forward for Sequence contig_64442 - ID 828 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11427 0 0 0 Non Coding 11478 0 0 0 UTR 21 0 0 0 Phase 0 60 0 0 0 Coding 190 0 0 0 Phase 1 55 0 0 0 Intron 0 0 0 0 Phase 2 45 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98187 1.00000 0.99085 Non Coding 0.98625 1.00000 0.99308 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_64442 - ID 828 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11636 0 0 0 Non Coding 11636 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99983 1.00000 0.99991 Non Coding 0.99983 1.00000 0.99991 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_64634 - ID 829 Forward for Sequence contig_64634 - ID 829 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2175 0 0 0 Non Coding 2296 0 0 0 UTR 121 0 0 0 Phase 0 83 0 0 0 Coding 249 0 0 0 Phase 1 83 0 0 0 Intron 0 0 0 0 Phase 2 83 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.85462 1.00000 0.92161 Non Coding 0.90216 1.00000 0.94856 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_64634 - ID 829 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2523 0 0 0 Non Coding 2528 0 0 0 UTR 1 0 0 0 Phase 0 6 0 0 0 Coding 21 0 0 0 Phase 1 6 0 0 0 Intron 0 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99136 1.00000 0.99566 Non Coding 0.99332 1.00000 0.99665 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_64774 - ID 830 Forward for Sequence contig_64774 - ID 830 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5596 0 0 0 Non Coding 5689 0 0 0 UTR 33 0 0 0 Phase 0 379 0 0 0 Coding 1193 0 0 0 Phase 1 380 0 0 0 Intron 6 0 0 0 Phase 2 380 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.81957 1.00000 0.90084 Non Coding 0.83319 1.00000 0.90900 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_64774 - ID 830 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6828 0 0 0 Non Coding 6828 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_64911 - ID 831 Forward for Sequence contig_64911 - ID 831 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3469 0 0 0 Non Coding 3469 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_64911 - ID 831 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3469 0 0 0 Non Coding 3469 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_65520 - ID 832 Forward for Sequence contig_65520 - ID 832 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3323 0 0 0 Non Coding 3323 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_65520 - ID 832 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3323 0 0 0 Non Coding 3323 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_65578 - ID 833 Forward for Sequence contig_65578 - ID 833 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6362 7 0 0 Non Coding 7463 13 10 13 UTR 7 413 10 0 Phase 0 0 401 12 0 Coding 0 0 1268 0 Phase 1 0 0 404 12 Intron 0 0 0 674 Phase 2 0 12 0 401 Precision Recall F1 Precision Recall F1 Intergenic 0.99890 0.99890 0.99890 Non Coding 1.00000 0.99520 0.99759 UTR 0.98333 0.96047 0.97176 Phase 0 0.94131 0.97094 0.95590 Coding 0.99218 1.00000 0.99607 Phase 1 0.94836 0.97115 0.95962 Intron 1.00000 1.00000 1.00000 Phase 2 0.94131 0.97094 0.95590 Subgenic 0.99488 1.00000 0.99743 Coding 0.94366 0.97101 0.95714 Genic 0.99283 0.99283 0.99283 Reverse for Sequence contig_65578 - ID 833 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6189 8 0 0 Non Coding 6990 6 7 7 UTR 15 399 6 0 Phase 0 4 574 0 0 Coding 1 11 1727 0 Phase 1 1 0 573 0 Intron 0 0 7 378 Phase 2 6 0 0 573 Precision Recall F1 Precision Recall F1 Intergenic 0.99742 0.99871 0.99806 Non Coding 0.99843 0.99715 0.99779 UTR 0.95455 0.95000 0.95227 Phase 0 0.98966 0.99308 0.99136 Coding 0.99253 0.99310 0.99281 Phase 1 0.98793 0.99826 0.99307 Intron 1.00000 0.98182 0.99083 Phase 2 0.98793 0.98964 0.98878 Subgenic 0.99386 0.99105 0.99246 Coding 0.98851 0.99365 0.99107 Genic 0.98738 0.98428 0.98583 BP_Extractor for Sequence contig_65629 - ID 834 Forward for Sequence contig_65629 - ID 834 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2623 0 0 0 Non Coding 2623 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_65629 - ID 834 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2623 0 0 0 Non Coding 2623 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_65974 - ID 835 Forward for Sequence contig_65974 - ID 835 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3295 0 0 0 Non Coding 3306 0 0 0 UTR 8 0 0 0 Phase 0 10 0 0 0 Coding 23 0 0 0 Phase 1 9 0 0 0 Intron 7 0 0 0 Phase 2 8 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98860 1.00000 0.99427 Non Coding 0.99190 1.00000 0.99593 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_65974 - ID 835 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2939 0 0 0 Non Coding 3037 0 0 0 UTR 62 0 0 0 Phase 0 98 0 0 0 Coding 332 0 0 0 Phase 1 99 0 0 0 Intron 0 0 0 0 Phase 2 99 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.88179 1.00000 0.93718 Non Coding 0.91119 1.00000 0.95353 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_66049 - ID 836 Forward for Sequence contig_66049 - ID 836 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8275 3 4 3 Non Coding 11323 40 39 39 UTR 0 490 10 6 Phase 0 9 615 11 0 Coding 0 35 1995 33 Phase 1 14 0 621 17 Intron 79 30 4 2405 Phase 2 13 16 0 615 Precision Recall F1 Precision Recall F1 Intergenic 0.99054 0.99879 0.99465 Non Coding 0.99683 0.98969 0.99325 UTR 0.87814 0.96838 0.92105 Phase 0 0.91654 0.96850 0.94181 Coding 0.99106 0.96704 0.97890 Phase 1 0.92548 0.95245 0.93878 Intron 0.98284 0.95512 0.96878 Phase 2 0.91654 0.95497 0.93536 Subgenic 0.98655 0.96049 0.97334 Coding 0.91952 0.95857 0.93864 Genic 0.97449 0.96127 0.96784 Reverse for Sequence contig_66049 - ID 836 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9821 10 3 373 Non Coding 11714 45 46 46 UTR 38 270 7 2 Phase 0 19 488 0 0 Coding 68 5 1580 40 Phase 1 19 0 487 0 Intron 13 1 9 1132 Phase 2 21 0 0 487 Precision Recall F1 Precision Recall F1 Intergenic 0.98803 0.96218 0.97493 Non Coding 0.99499 0.98844 0.99170 UTR 0.94406 0.85174 0.89552 Phase 0 0.91557 0.96252 0.93846 Coding 0.98812 0.93325 0.95990 Phase 1 0.91370 0.96245 0.93744 Intron 0.73174 0.98009 0.83790 Phase 2 0.91370 0.95866 0.93564 Subgenic 0.86205 0.95225 0.90490 Coding 0.91432 0.96121 0.93718 Genic 0.86888 0.94218 0.90405 BP_Extractor for Sequence contig_66091 - ID 837 Forward for Sequence contig_66091 - ID 837 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4434 0 0 0 Non Coding 4434 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_66091 - ID 837 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4434 0 0 0 Non Coding 4434 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_66111 - ID 838 Forward for Sequence contig_66111 - ID 838 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3610 0 0 0 Non Coding 3610 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_66111 - ID 838 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3610 0 0 0 Non Coding 3610 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_66195 - ID 839 Forward for Sequence contig_66195 - ID 839 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2394 0 0 0 Non Coding 2394 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_66195 - ID 839 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 901 0 0 0 Non Coding 1746 2 3 3 UTR 2 172 0 8 Phase 0 0 214 0 0 Coding 0 0 640 0 Phase 1 0 0 213 0 Intron 0 1 8 662 Phase 2 0 0 0 213 Precision Recall F1 Precision Recall F1 Intergenic 0.99779 1.00000 0.99889 Non Coding 1.00000 0.99544 0.99771 UTR 0.99422 0.94505 0.96901 Phase 0 0.99074 1.00000 0.99535 Coding 0.98765 1.00000 0.99379 Phase 1 0.98611 1.00000 0.99301 Intron 0.98806 0.98659 0.98732 Phase 2 0.98611 1.00000 0.99301 Subgenic 0.98786 0.99314 0.99049 Coding 0.98765 1.00000 0.99379 Genic 0.98860 0.98727 0.98794 BP_Extractor for Sequence contig_66519 - ID 840 Forward for Sequence contig_66519 - ID 840 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6308 74 0 0 Non Coding 8166 6 6 7 UTR 89 402 8 0 Phase 0 6 391 0 0 Coding 14 4 1182 17 Phase 1 5 0 391 0 Intron 462 12 1 802 Phase 2 7 0 0 390 Precision Recall F1 Precision Recall F1 Intergenic 0.91779 0.98840 0.95179 Non Coding 0.99780 0.99768 0.99774 UTR 0.81707 0.80561 0.81130 Phase 0 0.98489 0.98489 0.98489 Coding 0.99244 0.97124 0.98173 Phase 1 0.98489 0.98737 0.98613 Intron 0.97924 0.62803 0.76527 Phase 2 0.98237 0.98237 0.98237 Subgenic 0.98706 0.79551 0.88099 Coding 0.98405 0.98487 0.98446 Genic 0.95364 0.79719 0.86843 Reverse for Sequence contig_66519 - ID 840 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 8670 0 0 0 Non Coding 9190 0 0 0 UTR 27 0 0 0 Phase 0 57 0 0 0 Coding 652 0 0 0 Phase 1 64 0 0 0 Intron 26 0 0 0 Phase 2 64 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.92480 1.00000 0.96093 Non Coding 0.98027 1.00000 0.99004 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_66746 - ID 841 Forward for Sequence contig_66746 - ID 841 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3024 0 0 0 Non Coding 3024 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_66746 - ID 841 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3023 0 0 0 Non Coding 3023 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99967 1.00000 0.99983 Non Coding 0.99967 1.00000 0.99983 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_67097 - ID 842 Forward for Sequence contig_67097 - ID 842 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2225 0 0 0 Non Coding 2225 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_67097 - ID 842 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2225 0 0 0 Non Coding 2225 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_67298 - ID 843 Forward for Sequence contig_67298 - ID 843 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3862 0 0 0 Non Coding 4444 0 0 0 UTR 39 0 0 0 Phase 0 90 0 0 0 Coding 369 0 0 0 Phase 1 79 0 0 0 Intron 425 0 0 0 Phase 2 82 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.82258 1.00000 0.90265 Non Coding 0.94654 1.00000 0.97254 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_67298 - ID 843 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4694 0 0 0 Non Coding 4690 0 0 0 UTR 0 0 0 0 Phase 0 2 0 0 0 Coding 1 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 2 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99979 1.00000 0.99989 Non Coding 0.99894 1.00000 0.99947 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_67552 - ID 844 Forward for Sequence contig_67552 - ID 844 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3986 0 0 0 Non Coding 3977 0 0 0 UTR 0 0 0 0 Phase 0 6 0 0 0 Coding 7 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 7 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99825 1.00000 0.99912 Non Coding 0.99599 1.00000 0.99799 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_67552 - ID 844 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3292 0 0 0 Non Coding 3356 0 0 0 UTR 35 0 0 0 Phase 0 211 0 0 0 Coding 666 0 0 0 Phase 1 217 0 0 0 Intron 0 0 0 0 Phase 2 209 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.82444 1.00000 0.90377 Non Coding 0.84047 1.00000 0.91332 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_67629 - ID 845 Forward for Sequence contig_67629 - ID 845 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5709 0 0 0 Non Coding 5710 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99965 1.00000 0.99982 Non Coding 0.99982 1.00000 0.99991 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_67629 - ID 845 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5108 3 0 0 Non Coding 5260 5 2 6 UTR 7 119 2 0 Phase 0 0 145 0 0 Coding 5 0 448 0 Phase 1 0 0 148 0 Intron 10 9 0 0 Phase 2 1 0 0 144 Precision Recall F1 Precision Recall F1 Intergenic 0.99571 0.99941 0.99756 Non Coding 0.99981 0.99753 0.99867 UTR 0.90840 0.92969 0.91892 Phase 0 0.96667 1.00000 0.98305 Coding 0.99556 0.98896 0.99225 Phase 1 0.98667 1.00000 0.99329 Intron NaN 0.00000 0.00000 Phase 2 0.96000 0.99310 0.97627 Subgenic 0.99556 0.94915 0.97180 Coding 0.97111 0.99772 0.98423 Genic 0.97590 0.94500 0.96020 BP_Extractor for Sequence contig_67694 - ID 846 Forward for Sequence contig_67694 - ID 846 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2130 0 0 0 Non Coding 2130 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_67694 - ID 846 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2130 0 0 0 Non Coding 2130 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_67794 - ID 847 Forward for Sequence contig_67794 - ID 847 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3649 11 0 0 Non Coding 4252 0 1 0 UTR 4 589 0 0 Phase 0 0 226 0 0 Coding 0 0 678 0 Phase 1 1 0 225 0 Intron 0 0 0 0 Phase 2 0 0 0 226 Precision Recall F1 Precision Recall F1 Intergenic 0.99891 0.99699 0.99795 Non Coding 0.99976 0.99976 0.99976 UTR 0.98167 0.99325 0.98743 Phase 0 1.00000 1.00000 1.00000 Coding 1.00000 1.00000 1.00000 Phase 1 0.99558 0.99558 0.99558 Intron NaN NaN NaN Phase 2 1.00000 1.00000 1.00000 Subgenic 1.00000 1.00000 1.00000 Coding 0.99853 0.99853 0.99853 Genic 0.99139 0.99685 0.99412 Reverse for Sequence contig_67794 - ID 847 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2428 0 1 76 Non Coding 4046 28 33 34 UTR 1 96 1 7 Phase 0 7 259 0 0 Coding 0 2 836 23 Phase 1 9 0 254 0 Intron 26 1 23 1410 Phase 2 8 0 0 253 Precision Recall F1 Precision Recall F1 Intergenic 0.98900 0.96926 0.97903 Non Coding 0.99410 0.97706 0.98551 UTR 0.96970 0.91429 0.94118 Phase 0 0.90244 0.97368 0.93671 Coding 0.97096 0.97096 0.97096 Phase 1 0.88502 0.96578 0.92364 Intron 0.93008 0.96575 0.94758 Phase 2 0.88153 0.96935 0.92336 Subgenic 0.94489 0.96769 0.95615 Coding 0.88966 0.96962 0.92792 Genic 0.94588 0.96538 0.95553 BP_Extractor for Sequence contig_68032 - ID 848 Forward for Sequence contig_68032 - ID 848 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5199 0 0 0 Non Coding 5199 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_68032 - ID 848 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4343 0 0 0 Non Coding 4496 0 0 0 UTR 30 0 0 0 Phase 0 247 0 0 0 Coding 817 0 0 0 Phase 1 226 0 0 0 Intron 9 0 0 0 Phase 2 230 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.83535 1.00000 0.91029 Non Coding 0.86478 1.00000 0.92749 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_68047 - ID 849 Forward for Sequence contig_68047 - ID 849 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4450 0 0 0 Non Coding 4545 0 0 0 UTR 25 0 0 0 Phase 0 61 0 0 0 Coding 236 0 0 0 Phase 1 61 0 0 0 Intron 18 0 0 0 Phase 2 62 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.94100 1.00000 0.96960 Non Coding 0.96109 1.00000 0.98016 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_68047 - ID 849 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3980 0 0 0 Non Coding 4087 0 0 0 UTR 53 0 0 0 Phase 0 213 0 0 0 Coding 664 0 0 0 Phase 1 215 0 0 0 Intron 32 0 0 0 Phase 2 214 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84162 1.00000 0.91400 Non Coding 0.86424 1.00000 0.92718 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_68924 - ID 850 Forward for Sequence contig_68924 - ID 850 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2582 0 0 0 Non Coding 2582 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_68924 - ID 850 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2577 0 0 0 Non Coding 2582 0 0 0 UTR 5 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99806 1.00000 0.99903 Non Coding 1.00000 1.00000 1.00000 UTR NaN 0.00000 0.00000 Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_68994 - ID 851 Forward for Sequence contig_68994 - ID 851 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 12650 0 0 0 Non Coding 12650 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_68994 - ID 851 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6367 5 323 27 Non Coding 9443 626 640 650 UTR 42 197 20 3 Phase 0 32 414 0 0 Coding 225 2 2749 25 Phase 1 28 0 400 0 Intron 138 14 28 2485 Phase 2 27 0 0 390 Precision Recall F1 Precision Recall F1 Intergenic 0.94019 0.94719 0.94368 Non Coding 0.99087 0.83132 0.90411 UTR 0.90367 0.75191 0.82083 Phase 0 0.39808 0.92825 0.55720 Coding 0.88109 0.91603 0.89822 Phase 1 0.38462 0.93458 0.54496 Intron 0.97835 0.93246 0.95485 Phase 2 0.37500 0.93525 0.53535 Subgenic 0.92473 0.92376 0.92425 Coding 0.38590 0.93261 0.54591 Genic 0.92395 0.91616 0.92004 BP_Extractor for Sequence contig_69335 - ID 852 Forward for Sequence contig_69335 - ID 852 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4259 0 0 0 Non Coding 4162 0 0 0 UTR 5 0 0 0 Phase 0 47 0 0 0 Coding 16 0 0 0 Phase 1 25 0 0 0 Intron 7 0 0 0 Phase 2 53 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99347 1.00000 0.99672 Non Coding 0.97084 1.00000 0.98521 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_69335 - ID 852 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 989 2 3 56 Non Coding 3362 6 9 10 UTR 0 143 7 2 Phase 0 1 302 0 0 Coding 0 0 913 1 Phase 1 0 0 299 0 Intron 49 0 1 2121 Phase 2 0 0 0 298 Precision Recall F1 Precision Recall F1 Intergenic 0.95279 0.94190 0.94732 Non Coding 0.99970 0.99262 0.99615 UTR 0.98621 0.94079 0.96296 Phase 0 0.98052 0.99670 0.98854 Coding 0.98810 0.99891 0.99347 Phase 1 0.97078 1.00000 0.98517 Intron 0.97294 0.97697 0.97495 Phase 2 0.96753 1.00000 0.98350 Subgenic 0.97745 0.98347 0.98045 Coding 0.97294 0.99889 0.98575 Genic 0.97784 0.98146 0.97965 BP_Extractor for Sequence contig_69408 - ID 853 Forward for Sequence contig_69408 - ID 853 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9136 0 0 0 Non Coding 9549 11 3 7 UTR 2 166 1 3 Phase 0 0 135 0 0 Coding 0 0 435 3 Phase 1 1 0 143 0 Intron 1 1 2 240 Phase 2 2 0 0 139 Precision Recall F1 Precision Recall F1 Intergenic 0.99967 1.00000 0.99984 Non Coding 0.99969 0.99781 0.99874 UTR 0.99401 0.96512 0.97935 Phase 0 0.92466 1.00000 0.96085 Coding 0.99315 0.99315 0.99315 Phase 1 0.97945 0.99306 0.98621 Intron 0.97561 0.98361 0.97959 Phase 2 0.95205 0.98582 0.96864 Subgenic 0.98684 0.98974 0.98829 Coding 0.95205 0.99286 0.97203 Genic 0.98825 0.98478 0.98651 Reverse for Sequence contig_69408 - ID 853 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9505 0 0 0 Non Coding 9591 0 0 0 UTR 23 0 0 0 Phase 0 133 0 0 0 Coding 438 0 0 0 Phase 1 134 0 0 0 Intron 24 0 0 0 Phase 2 132 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.95145 1.00000 0.97512 Non Coding 0.96006 1.00000 0.97962 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_70255 - ID 854 Forward for Sequence contig_70255 - ID 854 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2754 0 0 0 Non Coding 3119 0 0 0 UTR 12 0 0 0 Phase 0 61 0 0 0 Coding 234 0 0 0 Phase 1 59 0 0 0 Intron 298 0 0 0 Phase 2 59 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.83505 1.00000 0.91011 Non Coding 0.94572 1.00000 0.97211 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_70255 - ID 854 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3293 0 0 0 Non Coding 3298 0 0 0 UTR 1 0 0 0 Phase 0 0 0 0 0 Coding 4 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99848 1.00000 0.99924 Non Coding 1.00000 1.00000 1.00000 UTR NaN 0.00000 0.00000 Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_70282 - ID 855 Forward for Sequence contig_70282 - ID 855 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3422 0 0 0 Non Coding 3422 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_70282 - ID 855 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3293 0 0 0 Non Coding 3289 0 0 0 UTR 7 0 0 0 Phase 0 43 0 0 0 Coding 114 0 0 0 Phase 1 46 0 0 0 Intron 8 0 0 0 Phase 2 44 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96230 1.00000 0.98079 Non Coding 0.96113 1.00000 0.98018 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_70408 - ID 856 Forward for Sequence contig_70408 - ID 856 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3095 0 0 0 Non Coding 3095 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_70408 - ID 856 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3095 0 0 0 Non Coding 3095 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_70573 - ID 857 Forward for Sequence contig_70573 - ID 857 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3336 0 0 0 Non Coding 3336 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_70573 - ID 857 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3336 0 0 0 Non Coding 3336 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_71411 - ID 858 Forward for Sequence contig_71411 - ID 858 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1575 4 0 8 Non Coding 2023 51 50 63 UTR 0 156 2 13 Phase 0 1 302 0 0 Coding 0 5 1043 15 Phase 1 1 0 303 0 Intron 9 13 14 228 Phase 2 1 0 0 290 Precision Recall F1 Precision Recall F1 Intergenic 0.99432 0.99244 0.99338 Non Coding 0.99852 0.92501 0.96036 UTR 0.87640 0.91228 0.89398 Phase 0 0.85552 0.99670 0.92073 Coding 0.98489 0.98119 0.98303 Phase 1 0.85836 0.99671 0.92237 Intron 0.86364 0.86364 0.86364 Phase 2 0.82153 0.99656 0.90062 Subgenic 0.96070 0.95780 0.95925 Coding 0.84514 0.99666 0.91467 Genic 0.95070 0.95260 0.95165 Reverse for Sequence contig_71411 - ID 858 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3084 0 0 0 Non Coding 3085 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 1 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99968 1.00000 0.99984 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN NaN NaN Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_71607 - ID 859 Forward for Sequence contig_71607 - ID 859 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2574 0 0 0 Non Coding 2574 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 3 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99884 1.00000 0.99942 Non Coding 0.99884 1.00000 0.99942 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_71607 - ID 859 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1758 2 0 0 Non Coding 2014 3 4 2 UTR 15 182 8 1 Phase 0 11 175 0 0 Coding 6 8 523 26 Phase 1 8 0 174 0 Intron 1 4 3 40 Phase 2 10 0 0 176 Precision Recall F1 Precision Recall F1 Intergenic 0.98764 0.99886 0.99322 Non Coding 0.98581 0.99555 0.99065 UTR 0.92857 0.88350 0.90547 Phase 0 0.98315 0.94086 0.96154 Coding 0.97940 0.92895 0.95351 Phase 1 0.97753 0.95604 0.96667 Intron 0.59701 0.83333 0.69565 Phase 2 0.98876 0.94624 0.96703 Subgenic 0.93677 0.92144 0.92904 Coding 0.98315 0.94765 0.96507 Genic 0.93476 0.91187 0.92317 BP_Extractor for Sequence contig_71779 - ID 860 Forward for Sequence contig_71779 - ID 860 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2546 0 21 20 Non Coding 2767 40 39 40 UTR 49 18 6 0 Phase 0 9 189 0 0 Coding 87 0 652 9 Phase 1 9 0 190 0 Intron 43 0 8 22 Phase 2 9 0 0 189 Precision Recall F1 Precision Recall F1 Intergenic 0.93431 0.98415 0.95858 Non Coding 0.99034 0.95877 0.97430 UTR 1.00000 0.24658 0.39560 Phase 0 0.82533 0.95455 0.88525 Coding 0.94905 0.87166 0.90871 Phase 1 0.82969 0.95477 0.88785 Intron 0.43137 0.30137 0.35484 Phase 2 0.82533 0.95455 0.88525 Subgenic 0.91328 0.82095 0.86466 Coding 0.82678 0.95462 0.88612 Genic 0.91534 0.77405 0.83879 Reverse for Sequence contig_71779 - ID 860 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2927 4 1 0 Non Coding 3111 1 1 1 UTR 1 76 0 0 Phase 0 1 121 0 0 Coding 92 13 365 0 Phase 1 1 0 121 0 Intron 0 2 0 0 Phase 2 2 0 0 121 Precision Recall F1 Precision Recall F1 Intergenic 0.96921 0.99829 0.98353 Non Coding 0.99872 0.99904 0.99888 UTR 0.80000 0.98701 0.88372 Phase 0 0.99180 0.99180 0.99180 Coding 0.99727 0.77660 0.87321 Phase 1 0.99180 0.99180 0.99180 Intron NaN 0.00000 0.00000 Phase 2 0.99180 0.98374 0.98776 Subgenic 0.99727 0.77331 0.87112 Coding 0.99180 0.98910 0.99045 Genic 0.95662 0.80328 0.87327 BP_Extractor for Sequence contig_71790 - ID 861 Forward for Sequence contig_71790 - ID 861 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2086 0 0 0 Non Coding 2086 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_71790 - ID 861 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2086 0 0 0 Non Coding 2086 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_71832 - ID 862 Forward for Sequence contig_71832 - ID 862 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 10214 0 0 0 Non Coding 10781 0 0 0 UTR 125 0 0 0 Phase 0 149 0 0 0 Coding 794 0 0 0 Phase 1 129 0 0 0 Intron 58 0 0 0 Phase 2 132 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.91270 1.00000 0.95436 Non Coding 0.96336 1.00000 0.98134 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_71832 - ID 862 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6640 23 3 3 Non Coding 10043 79 67 74 UTR 7 633 20 0 Phase 0 3 297 0 0 Coding 5 0 1094 61 Phase 1 9 0 309 0 Intron 0 0 11 2691 Phase 2 8 0 0 302 Precision Recall F1 Precision Recall F1 Intergenic 0.99820 0.99565 0.99692 Non Coding 0.99801 0.97856 0.98819 UTR 0.96494 0.95909 0.96201 Phase 0 0.78989 0.99000 0.87870 Coding 0.96986 0.94310 0.95629 Phase 1 0.82181 0.97170 0.89049 Intron 0.97677 0.99593 0.98626 Phase 2 0.80319 0.97419 0.88047 Subgenic 0.97476 0.98006 0.97740 Coding 0.80496 0.97845 0.88327 Genic 0.97334 0.97700 0.97517 BP_Extractor for Sequence contig_71973 - ID 863 Forward for Sequence contig_71973 - ID 863 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5758 0 0 0 Non Coding 5758 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99965 1.00000 0.99983 Non Coding 0.99965 1.00000 0.99983 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_71973 - ID 863 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5760 0 0 0 Non Coding 5760 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_72488 - ID 864 Forward for Sequence contig_72488 - ID 864 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4180 0 0 0 Non Coding 4180 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_72488 - ID 864 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4180 0 0 0 Non Coding 4180 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_72496 - ID 865 Forward for Sequence contig_72496 - ID 865 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2171 0 0 0 Non Coding 2171 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_72496 - ID 865 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2171 0 0 0 Non Coding 2171 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_72747 - ID 866 Forward for Sequence contig_72747 - ID 866 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1797 0 0 0 Non Coding 2287 0 0 0 UTR 17 0 0 0 Phase 0 78 0 0 0 Coding 707 0 0 0 Phase 1 94 0 0 0 Intron 0 0 0 0 Phase 2 62 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.71281 1.00000 0.83233 Non Coding 0.90718 1.00000 0.95133 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_72747 - ID 866 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2521 0 0 0 Non Coding 2521 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_72763 - ID 867 Forward for Sequence contig_72763 - ID 867 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3338 0 0 0 Non Coding 3338 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_72763 - ID 867 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2787 0 0 0 Non Coding 2853 1 3 4 UTR 18 44 0 0 Phase 0 6 156 0 0 Coding 19 0 470 0 Phase 1 5 0 153 0 Intron 0 0 0 0 Phase 2 4 0 0 153 Precision Recall F1 Precision Recall F1 Intergenic 0.98690 1.00000 0.99341 Non Coding 0.99477 0.99720 0.99599 UTR 1.00000 0.70968 0.83019 Phase 0 0.99363 0.96296 0.97806 Coding 1.00000 0.96115 0.98019 Phase 1 0.98077 0.96835 0.97452 Intron NaN NaN NaN Phase 2 0.97452 0.97452 0.97452 Subgenic 1.00000 0.96115 0.98019 Coding 0.98298 0.96855 0.97571 Genic 1.00000 0.93285 0.96526 BP_Extractor for Sequence contig_72781 - ID 868 Forward for Sequence contig_72781 - ID 868 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2483 0 0 0 Non Coding 2483 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_72781 - ID 868 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2160 0 0 0 Non Coding 2296 0 0 0 UTR 39 0 0 0 Phase 0 60 0 0 0 Coding 219 0 0 0 Phase 1 64 0 0 0 Intron 65 0 0 0 Phase 2 63 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.86992 1.00000 0.93043 Non Coding 0.92469 1.00000 0.96087 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_72871 - ID 869 Forward for Sequence contig_72871 - ID 869 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5847 0 0 0 Non Coding 5893 0 0 0 UTR 4 0 0 0 Phase 0 6 0 0 0 Coding 53 0 0 0 Phase 1 3 0 0 0 Intron 3 0 0 0 Phase 2 5 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.98984 1.00000 0.99490 Non Coding 0.99763 1.00000 0.99881 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_72871 - ID 869 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5907 0 0 0 Non Coding 5907 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_73281 - ID 870 Forward for Sequence contig_73281 - ID 870 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1881 22 127 0 Non Coding 5072 353 377 387 UTR 25 649 20 5 Phase 0 8 985 0 0 Coding 105 16 3852 12 Phase 1 11 0 961 0 Intron 42 26 15 2319 Phase 2 11 0 0 951 Precision Recall F1 Precision Recall F1 Intergenic 0.91622 0.92660 0.92138 Non Coding 0.99412 0.81952 0.89841 UTR 0.91024 0.92847 0.91926 Phase 0 0.73617 0.99194 0.84513 Coding 0.95964 0.96662 0.96312 Phase 1 0.71824 0.98868 0.83203 Intron 0.99272 0.96545 0.97889 Phase 2 0.71076 0.98857 0.82696 Subgenic 0.97181 0.96618 0.96899 Coding 0.72172 0.98975 0.83475 Genic 0.96560 0.96246 0.96403 Reverse for Sequence contig_73281 - ID 870 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 9116 0 0 0 Non Coding 9116 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_73464 - ID 871 Forward for Sequence contig_73464 - ID 871 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4093 0 0 0 Non Coding 4090 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 5 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99878 1.00000 0.99939 Non Coding 0.99805 1.00000 0.99902 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_73464 - ID 871 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4098 0 0 0 Non Coding 4098 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_73975 - ID 872 Forward for Sequence contig_73975 - ID 872 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2295 0 0 0 Non Coding 2295 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_73975 - ID 872 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1871 0 0 0 Non Coding 1920 0 0 0 UTR 21 0 0 0 Phase 0 116 0 0 0 Coding 403 0 0 0 Phase 1 130 0 0 0 Intron 0 0 0 0 Phase 2 129 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.81525 1.00000 0.89822 Non Coding 0.83660 1.00000 0.91103 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_74158 - ID 873 Forward for Sequence contig_74158 - ID 873 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1854 44 2 0 Non Coding 3461 54 54 50 UTR 4 96 5 7 Phase 0 1 452 0 0 Coding 0 0 1508 70 Phase 1 5 0 452 0 Intron 5 0 3 1390 Phase 2 3 0 0 456 Precision Recall F1 Precision Recall F1 Intergenic 0.99517 0.97579 0.98538 Non Coding 0.99741 0.95634 0.97644 UTR 0.68571 0.85714 0.76190 Phase 0 0.89328 0.99779 0.94265 Coding 0.99341 0.95564 0.97416 Phase 1 0.89328 0.98906 0.93873 Intron 0.94751 0.99428 0.97033 Phase 2 0.90119 0.99346 0.94508 Subgenic 0.97085 0.97379 0.97232 Coding 0.89592 0.99343 0.94215 Genic 0.95808 0.96956 0.96379 Reverse for Sequence contig_74158 - ID 873 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4633 0 0 0 Non Coding 4717 0 0 0 UTR 0 84 0 0 Phase 0 32 57 0 0 Coding 97 3 171 0 Phase 1 34 0 57 0 Intron 0 0 0 0 Phase 2 34 0 0 57 Precision Recall F1 Precision Recall F1 Intergenic 0.97949 1.00000 0.98964 Non Coding 0.97924 1.00000 0.98951 UTR 0.96552 1.00000 0.98246 Phase 0 1.00000 0.64045 0.78082 Coding 1.00000 0.63100 0.77376 Phase 1 1.00000 0.62637 0.77027 Intron NaN NaN NaN Phase 2 1.00000 0.62637 0.77027 Subgenic 1.00000 0.63100 0.77376 Coding 1.00000 0.63100 0.77376 Genic 0.98837 0.71831 0.83197 BP_Extractor for Sequence contig_74547 - ID 874 Forward for Sequence contig_74547 - ID 874 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5385 0 0 0 Non Coding 5382 0 0 0 UTR 4 0 0 0 Phase 0 14 0 0 0 Coding 29 0 0 0 Phase 1 11 0 0 0 Intron 0 0 0 0 Phase 2 11 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99391 1.00000 0.99695 Non Coding 0.99336 1.00000 0.99667 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_74547 - ID 874 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1956 0 120 22 Non Coding 3612 285 293 302 UTR 0 100 4 17 Phase 0 8 309 0 0 Coding 37 8 1593 60 Phase 1 8 0 301 0 Intron 0 24 65 1412 Phase 2 8 0 0 292 Precision Recall F1 Precision Recall F1 Intergenic 0.98144 0.93232 0.95625 Non Coding 0.99340 0.80410 0.88878 UTR 0.75758 0.82645 0.79051 Phase 0 0.52020 0.97476 0.67838 Coding 0.89394 0.93816 0.91552 Phase 1 0.50673 0.97411 0.66667 Intron 0.93448 0.94071 0.93758 Phase 2 0.49158 0.97333 0.65324 Subgenic 0.91254 0.93936 0.92575 Coding 0.50617 0.97408 0.66617 Genic 0.90657 0.93524 0.92068 BP_Extractor for Sequence contig_74588 - ID 875 Forward for Sequence contig_74588 - ID 875 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2136 0 0 0 Non Coding 2136 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_74588 - ID 875 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2132 0 0 0 Non Coding 2131 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 4 0 0 0 Phase 1 1 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99813 1.00000 0.99906 Non Coding 0.99766 1.00000 0.99883 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_74911 - ID 876 Forward for Sequence contig_74911 - ID 876 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5377 0 0 0 Non Coding 5377 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_74911 - ID 876 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1975 5 8 143 Non Coding 4113 31 39 38 UTR 2 64 17 3 Phase 0 5 384 0 0 Coding 0 0 1220 26 Phase 1 7 0 376 0 Intron 25 0 0 1889 Phase 2 7 0 0 377 Precision Recall F1 Precision Recall F1 Intergenic 0.98651 0.92679 0.95572 Non Coding 0.99540 0.97441 0.98480 UTR 0.92754 0.74419 0.82581 Phase 0 0.92530 0.98715 0.95522 Coding 0.97992 0.97913 0.97953 Phase 1 0.90602 0.98172 0.94236 Intron 0.91655 0.98694 0.95044 Phase 2 0.90843 0.98177 0.94368 Subgenic 0.94041 0.98386 0.96165 Coding 0.91325 0.98356 0.94711 Genic 0.94015 0.97751 0.95847 BP_Extractor for Sequence contig_75257 - ID 877 Forward for Sequence contig_75257 - ID 877 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2967 0 0 0 Non Coding 3307 10 8 12 UTR 1 105 4 0 Phase 0 0 448 0 0 Coding 0 0 1352 11 Phase 1 3 0 449 0 Intron 0 0 17 230 Phase 2 4 0 0 446 Precision Recall F1 Precision Recall F1 Intergenic 0.99966 1.00000 0.99983 Non Coding 0.99789 0.99101 0.99444 UTR 1.00000 0.95455 0.97674 Phase 0 0.97817 1.00000 0.98896 Coding 0.98471 0.99193 0.98830 Phase 1 0.98249 0.99336 0.98790 Intron 0.95436 0.93117 0.94262 Phase 2 0.97380 0.99111 0.98238 Subgenic 0.98017 0.98261 0.98139 Coding 0.97815 0.99481 0.98641 Genic 0.98138 0.98081 0.98110 Reverse for Sequence contig_75257 - ID 877 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2963 0 16 83 Non Coding 3388 35 44 48 UTR 19 120 5 4 Phase 0 5 392 0 0 Coding 25 2 1259 8 Phase 1 6 0 383 0 Intron 0 0 1 182 Phase 2 7 0 0 379 Precision Recall F1 Precision Recall F1 Intergenic 0.98537 0.96767 0.97644 Non Coding 0.99472 0.96387 0.97905 UTR 0.98361 0.81081 0.88889 Phase 0 0.91803 0.98741 0.95146 Coding 0.98283 0.97295 0.97786 Phase 1 0.89696 0.98458 0.93873 Intron 0.65704 0.99454 0.79130 Phase 2 0.88759 0.98187 0.93235 Subgenic 0.92490 0.97563 0.94959 Coding 0.90086 0.98464 0.94089 Genic 0.92917 0.96062 0.94463 BP_Extractor for Sequence contig_75508 - ID 878 Forward for Sequence contig_75508 - ID 878 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5188 0 0 0 Non Coding 5188 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_75508 - ID 878 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2982 5 0 45 Non Coding 4358 20 23 20 UTR 12 149 2 5 Phase 0 6 248 0 0 Coding 22 0 793 12 Phase 1 11 0 245 0 Intron 3 13 9 1136 Phase 2 9 0 0 248 Precision Recall F1 Precision Recall F1 Intergenic 0.98774 0.98351 0.98562 Non Coding 0.99407 0.98575 0.98989 UTR 0.89222 0.88690 0.88955 Phase 0 0.92537 0.97638 0.95019 Coding 0.98632 0.95889 0.97241 Phase 1 0.91418 0.95703 0.93511 Intron 0.94825 0.97847 0.96312 Phase 2 0.92537 0.96498 0.94476 Subgenic 0.96354 0.97032 0.96692 Coding 0.92164 0.96610 0.94335 Genic 0.95805 0.96382 0.96092 BP_Extractor for Sequence contig_75805 - ID 879 Forward for Sequence contig_75805 - ID 879 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2736 0 0 0 Non Coding 2844 0 0 0 UTR 99 0 0 0 Phase 0 127 0 0 0 Coding 386 0 0 0 Phase 1 125 0 0 0 Intron 0 0 0 0 Phase 2 125 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.84943 1.00000 0.91858 Non Coding 0.88296 1.00000 0.93784 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_75805 - ID 879 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3221 0 0 0 Non Coding 3221 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_76064 - ID 880 Forward for Sequence contig_76064 - ID 880 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1426 3 0 60 Non Coding 2412 3 4 6 UTR 3 136 0 2 Phase 0 6 275 0 1 Coding 0 1 832 21 Phase 1 5 2 275 0 Intron 13 2 8 762 Phase 2 6 0 1 273 Precision Recall F1 Precision Recall F1 Intergenic 0.98890 0.95769 0.97305 Non Coding 0.99300 0.99464 0.99382 UTR 0.95775 0.96454 0.96113 Phase 0 0.98214 0.97518 0.97865 Coding 0.99048 0.97424 0.98229 Phase 1 0.98214 0.97518 0.97865 Intron 0.90178 0.97070 0.93497 Phase 2 0.97500 0.97500 0.97500 Subgenic 0.94599 0.97254 0.95909 Coding 0.97976 0.97512 0.97743 Genic 0.94691 0.97191 0.95925 Reverse for Sequence contig_76064 - ID 880 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3269 0 0 0 Non Coding 3269 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_76208 - ID 881 Forward for Sequence contig_76208 - ID 881 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2841 0 0 0 Non Coding 2841 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_76208 - ID 881 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2754 0 0 0 Non Coding 2787 0 0 0 UTR 29 0 0 0 Phase 0 20 0 0 0 Coding 58 0 0 0 Phase 1 22 0 0 0 Intron 0 0 0 0 Phase 2 12 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96938 1.00000 0.98445 Non Coding 0.98099 1.00000 0.99041 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_77591 - ID 882 Forward for Sequence contig_77591 - ID 882 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3192 0 0 0 Non Coding 3192 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_77591 - ID 882 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1195 4 0 0 Non Coding 1953 35 28 31 UTR 0 298 5 0 Phase 0 1 377 0 0 Coding 0 2 1226 2 Phase 1 1 0 384 0 Intron 1 2 5 452 Phase 2 1 0 0 381 Precision Recall F1 Precision Recall F1 Intergenic 0.99916 0.99666 0.99791 Non Coding 0.99847 0.95408 0.97577 UTR 0.97386 0.98350 0.97865 Phase 0 0.91505 0.99735 0.95443 Coding 0.99191 0.99675 0.99432 Phase 1 0.93204 0.99740 0.96361 Intron 0.99559 0.98261 0.98906 Phase 2 0.92476 0.99738 0.95970 Subgenic 0.99290 0.99290 0.99290 Coding 0.92395 0.99738 0.95926 Genic 0.98998 0.99147 0.99072 BP_Extractor for Sequence contig_77956 - ID 883 Forward for Sequence contig_77956 - ID 883 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3993 0 0 0 Non Coding 3993 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_77956 - ID 883 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3993 0 0 0 Non Coding 3993 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_78462 - ID 884 Forward for Sequence contig_78462 - ID 884 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2521 0 0 0 Non Coding 2521 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_78462 - ID 884 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2521 0 0 0 Non Coding 2521 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_78503 - ID 885 Forward for Sequence contig_78503 - ID 885 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2722 4 0 0 Non Coding 4744 3 2 1 UTR 0 249 1 0 Phase 0 0 311 0 0 Coding 0 0 937 0 Phase 1 0 0 312 0 Intron 0 1 4 1768 Phase 2 0 0 0 313 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.99853 0.99927 Non Coding 1.00000 0.99874 0.99937 UTR 0.98031 0.99600 0.98810 Phase 0 0.99045 1.00000 0.99520 Coding 0.99469 1.00000 0.99734 Phase 1 0.99363 1.00000 0.99681 Intron 1.00000 0.99718 0.99859 Phase 2 0.99682 1.00000 0.99841 Subgenic 0.99815 0.99815 0.99815 Coding 0.99363 1.00000 0.99681 Genic 0.99663 0.99797 0.99730 Reverse for Sequence contig_78503 - ID 885 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5686 0 0 0 Non Coding 5686 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_78603 - ID 886 Forward for Sequence contig_78603 - ID 886 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2347 0 0 0 Non Coding 2426 0 0 0 UTR 10 0 0 0 Phase 0 91 0 0 0 Coding 339 0 0 0 Phase 1 86 0 0 0 Intron 0 0 0 0 Phase 2 93 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.87055 1.00000 0.93080 Non Coding 0.89985 1.00000 0.94729 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_78603 - ID 886 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2696 0 0 0 Non Coding 2696 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_78693 - ID 887 Forward for Sequence contig_78693 - ID 887 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3262 0 0 0 Non Coding 3262 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_78693 - ID 887 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2735 0 0 0 Non Coding 2786 0 0 0 UTR 41 0 0 0 Phase 0 157 0 0 0 Coding 486 0 0 0 Phase 1 159 0 0 0 Intron 0 0 0 0 Phase 2 160 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.83844 1.00000 0.91212 Non Coding 0.85408 1.00000 0.92130 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_79030 - ID 888 Forward for Sequence contig_79030 - ID 888 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 6672 0 0 0 Non Coding 6672 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_79030 - ID 888 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 421 3 0 0 Non Coding 4759 44 53 48 UTR 2 385 20 15 Phase 0 5 589 0 0 Coding 0 2 1834 29 Phase 1 4 0 580 0 Intron 20 17 45 3879 Phase 2 5 0 0 585 Precision Recall F1 Precision Recall F1 Intergenic 0.95034 0.99292 0.97116 Non Coding 0.99707 0.97043 0.98357 UTR 0.94595 0.91232 0.92883 Phase 0 0.93049 0.99158 0.96007 Coding 0.96577 0.98338 0.97450 Phase 1 0.91627 0.99315 0.95316 Intron 0.98878 0.97930 0.98402 Phase 2 0.92417 0.99153 0.95666 Subgenic 0.98128 0.98060 0.98094 Coding 0.92364 0.99208 0.95664 Genic 0.97897 0.97599 0.97748 BP_Extractor for Sequence contig_79246 - ID 889 Forward for Sequence contig_79246 - ID 889 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2610 0 0 0 Non Coding 2610 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_79246 - ID 889 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 239 9 4 87 Non Coding 1095 8 5 8 UTR 10 502 5 1 Phase 0 0 497 0 0 Coding 0 0 1503 17 Phase 1 0 0 500 0 Intron 38 0 3 192 Phase 2 0 0 0 497 Precision Recall F1 Precision Recall F1 Intergenic 0.83275 0.70501 0.76358 Non Coding 1.00000 0.98118 0.99050 UTR 0.98239 0.96911 0.97570 Phase 0 0.98416 1.00000 0.99202 Coding 0.99208 0.98882 0.99044 Phase 1 0.99010 1.00000 0.99502 Intron 0.64646 0.82403 0.72453 Phase 2 0.98416 1.00000 0.99202 Subgenic 0.93543 0.96691 0.95091 Coding 0.98614 1.00000 0.99302 Genic 0.94576 0.96742 0.95646 BP_Extractor for Sequence contig_79798 - ID 890 Forward for Sequence contig_79798 - ID 890 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3733 0 0 0 Non Coding 3733 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_79798 - ID 890 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 391 0 0 31 Non Coding 2290 30 21 22 UTR 22 75 4 9 Phase 0 9 433 9 0 Coding 18 19 1366 18 Phase 1 9 0 442 10 Intron 12 8 46 1714 Phase 2 9 9 0 440 Precision Recall F1 Precision Recall F1 Intergenic 0.88262 0.92654 0.90405 Non Coding 0.98835 0.96911 0.97863 UTR 0.73529 0.68182 0.70755 Phase 0 0.91737 0.96009 0.93824 Coding 0.96469 0.96129 0.96299 Phase 1 0.93644 0.95879 0.94748 Intron 0.96727 0.96292 0.96509 Phase 2 0.93220 0.96070 0.94624 Subgenic 0.96612 0.96220 0.96416 Coding 0.92867 0.95985 0.94401 Genic 0.95897 0.95288 0.95592 BP_Extractor for Sequence contig_80262 - ID 891 Forward for Sequence contig_80262 - ID 891 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5729 0 0 0 Non Coding 5726 0 0 0 UTR 0 0 0 0 Phase 0 7 0 0 0 Coding 15 0 0 0 Phase 1 4 0 0 0 Intron 0 0 0 0 Phase 2 7 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99739 1.00000 0.99869 Non Coding 0.99687 1.00000 0.99843 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_80262 - ID 891 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 5744 0 0 0 Non Coding 5743 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 0.99983 1.00000 0.99991 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN 0.00000 0.00000 Genic NaN NaN NaN BP_Extractor for Sequence contig_80635 - ID 892 Forward for Sequence contig_80635 - ID 892 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4026 0 0 0 Non Coding 4026 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_80635 - ID 892 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 4022 0 0 0 Non Coding 4017 0 0 0 UTR 0 0 0 0 Phase 0 3 0 0 0 Coding 4 0 0 0 Phase 1 3 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99901 1.00000 0.99950 Non Coding 0.99776 1.00000 0.99888 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_80880 - ID 893 Forward for Sequence contig_80880 - ID 893 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3563 0 0 0 Non Coding 3563 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_80880 - ID 893 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 427 14 0 28 Non Coding 2615 7 7 5 UTR 0 314 17 8 Phase 0 2 307 0 0 Coding 0 0 921 10 Phase 1 2 0 307 0 Intron 0 0 4 1820 Phase 2 2 0 0 309 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 0.91045 0.95312 Non Coding 0.99771 0.99279 0.99524 UTR 0.95732 0.92625 0.94153 Phase 0 0.97771 0.99353 0.98555 Coding 0.97771 0.98926 0.98345 Phase 1 0.97771 0.99353 0.98555 Intron 0.97535 0.99781 0.98645 Phase 2 0.98408 0.99357 0.98880 Subgenic 0.97614 0.99492 0.98544 Coding 0.97983 0.99354 0.98664 Genic 0.97417 0.98739 0.98074 BP_Extractor for Sequence contig_80889 - ID 894 Forward for Sequence contig_80889 - ID 894 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2832 0 0 0 Non Coding 2860 0 0 0 UTR 21 0 0 0 Phase 0 182 0 0 0 Coding 551 0 0 0 Phase 1 182 0 0 0 Intron 2 0 0 0 Phase 2 182 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.83147 1.00000 0.90798 Non Coding 0.83969 1.00000 0.91286 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_80889 - ID 894 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3334 0 0 0 Non Coding 3356 0 0 0 UTR 14 0 0 0 Phase 0 19 0 0 0 Coding 58 0 0 0 Phase 1 14 0 0 0 Intron 0 0 0 0 Phase 2 17 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.97886 1.00000 0.98932 Non Coding 0.98532 1.00000 0.99261 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_81029 - ID 895 Forward for Sequence contig_81029 - ID 895 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2851 0 0 0 Non Coding 2851 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_81029 - ID 895 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2841 0 0 0 Non Coding 2843 0 0 0 UTR 1 0 0 0 Phase 0 3 0 0 0 Coding 9 0 0 0 Phase 1 2 0 0 0 Intron 0 0 0 0 Phase 2 3 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99649 1.00000 0.99824 Non Coding 0.99719 1.00000 0.99860 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_81333 - ID 896 Forward for Sequence contig_81333 - ID 896 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2737 0 0 0 Non Coding 2737 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_81333 - ID 896 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1475 4 0 15 Non Coding 1739 1 1 1 UTR 1 119 2 26 Phase 0 1 331 0 0 Coding 0 5 993 3 Phase 1 0 0 331 0 Intron 0 15 1 78 Phase 2 1 0 0 331 Precision Recall F1 Precision Recall F1 Intergenic 0.99932 0.98728 0.99327 Non Coding 0.99885 0.99828 0.99856 UTR 0.83217 0.80405 0.81787 Phase 0 0.99699 0.99699 0.99699 Coding 0.99699 0.99201 0.99449 Phase 1 0.99699 1.00000 0.99849 Intron 0.63934 0.82979 0.72222 Phase 2 0.99699 0.99699 0.99699 Subgenic 0.95796 0.97808 0.96792 Coding 0.99699 0.99799 0.99749 Genic 0.94370 0.95736 0.95048 BP_Extractor for Sequence contig_82065 - ID 897 Forward for Sequence contig_82065 - ID 897 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3114 0 0 0 Non Coding 3114 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_82065 - ID 897 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3098 0 0 0 Non Coding 3100 0 0 0 UTR 5 0 0 0 Phase 0 2 0 0 0 Coding 11 0 0 0 Phase 1 6 0 0 0 Intron 0 0 0 0 Phase 2 6 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99486 1.00000 0.99742 Non Coding 0.99550 1.00000 0.99775 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_82649 - ID 898 Forward for Sequence contig_82649 - ID 898 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1698 6 0 0 Non Coding 2087 0 0 0 UTR 74 200 0 0 Phase 0 97 264 0 0 Coding 316 1 792 0 Phase 1 87 0 264 0 Intron 9 5 0 55 Phase 2 93 0 0 264 Precision Recall F1 Precision Recall F1 Intergenic 0.80973 0.99648 0.89345 Non Coding 0.88283 1.00000 0.93777 UTR 0.94340 0.72993 0.82305 Phase 0 1.00000 0.73130 0.84480 Coding 1.00000 0.71416 0.83325 Phase 1 1.00000 0.75214 0.85854 Intron 1.00000 0.79710 0.88710 Phase 2 1.00000 0.73950 0.85024 Subgenic 1.00000 0.71902 0.83654 Coding 1.00000 0.74088 0.85116 Genic 0.98867 0.72107 0.83393 Reverse for Sequence contig_82649 - ID 898 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3156 0 0 0 Non Coding 3156 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_83016 - ID 899 Forward for Sequence contig_83016 - ID 899 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3022 0 0 0 Non Coding 3022 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_83016 - ID 899 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3011 0 0 0 Non Coding 3018 0 0 0 UTR 2 0 0 0 Phase 0 1 0 0 0 Coding 6 0 0 0 Phase 1 2 0 0 0 Intron 3 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99636 1.00000 0.99818 Non Coding 0.99868 1.00000 0.99934 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 BP_Extractor for Sequence contig_83087 - ID 900 Forward for Sequence contig_83087 - ID 900 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2553 0 0 0 Non Coding 2553 0 0 0 UTR 0 0 0 0 Phase 0 1 0 0 0 Coding 2 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 1 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.99922 1.00000 0.99961 Non Coding 0.99922 1.00000 0.99961 UTR NaN NaN NaN Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_83087 - ID 900 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2555 0 0 0 Non Coding 2555 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_84578 - ID 901 Forward for Sequence contig_84578 - ID 901 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1973 0 0 0 Non Coding 1973 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_84578 - ID 901 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 1973 0 0 0 Non Coding 1973 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_84790 - ID 902 Forward for Sequence contig_84790 - ID 902 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2467 0 0 0 Non Coding 2467 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_84790 - ID 902 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2467 0 0 0 Non Coding 2467 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_86586 - ID 903 Forward for Sequence contig_86586 - ID 903 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 0 0 0 0 Non Coding 2064 3 3 3 UTR 0 0 1 0 Phase 0 4 197 0 0 Coding 0 0 596 30 Phase 1 6 0 197 0 Intron 3 1 3 2044 Phase 2 4 0 0 197 Precision Recall F1 Precision Recall F1 Intergenic 0.00000 NaN 0.00000 Non Coding 0.99326 0.99566 0.99446 UTR 0.00000 0.00000 0.00000 Phase 0 0.98500 0.98010 0.98254 Coding 0.99333 0.95208 0.97227 Phase 1 0.98500 0.97044 0.97767 Intron 0.98554 0.99659 0.99103 Phase 2 0.98500 0.98010 0.98254 Subgenic 0.98728 0.98618 0.98673 Coding 0.98500 0.97686 0.98091 Genic 0.98692 0.98581 0.98636 Reverse for Sequence contig_86586 - ID 903 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 2678 0 0 0 Non Coding 2678 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_87001 - ID 904 Forward for Sequence contig_87001 - ID 904 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3542 7 6 1 Non Coding 4440 20 20 22 UTR 24 76 6 0 Phase 0 7 263 0 0 Coding 5 22 832 35 Phase 1 6 0 263 0 Intron 0 0 5 745 Phase 2 4 0 0 261 Precision Recall F1 Precision Recall F1 Intergenic 0.99188 0.99606 0.99397 Non Coding 0.99619 0.98623 0.99118 UTR 0.72381 0.71698 0.72038 Phase 0 0.92933 0.97407 0.95118 Coding 0.97998 0.93065 0.95468 Phase 1 0.92933 0.97770 0.95290 Intron 0.95391 0.99333 0.97322 Phase 2 0.92226 0.98491 0.95255 Subgenic 0.96748 0.95925 0.96335 Coding 0.92697 0.97886 0.95221 Genic 0.95274 0.94457 0.94864 Reverse for Sequence contig_87001 - ID 904 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3495 2 68 0 Non Coding 4168 76 81 81 UTR 8 503 0 0 Phase 0 4 299 0 0 Coding 0 5 1053 9 Phase 1 5 0 294 0 Intron 11 9 4 139 Phase 2 4 0 0 294 Precision Recall F1 Precision Recall F1 Intergenic 0.99459 0.98036 0.98743 Non Coding 0.99689 0.94598 0.97077 UTR 0.96917 0.98434 0.97670 Phase 0 0.79733 0.98680 0.88201 Coding 0.93600 0.98688 0.96077 Phase 1 0.78400 0.98328 0.87240 Intron 0.93919 0.85276 0.89389 Phase 2 0.78400 0.98658 0.87370 Subgenic 0.93637 0.96911 0.95246 Coding 0.78844 0.98556 0.87605 Genic 0.94587 0.97358 0.95952 BP_Extractor for Sequence contig_87212 - ID 905 Forward for Sequence contig_87212 - ID 905 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3178 0 0 0 Non Coding 3178 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN Reverse for Sequence contig_87212 - ID 905 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3178 0 0 0 Non Coding 3178 0 0 0 UTR 0 0 0 0 Phase 0 0 0 0 0 Coding 0 0 0 0 Phase 1 0 0 0 0 Intron 0 0 0 0 Phase 2 0 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 1.00000 1.00000 1.00000 Non Coding 1.00000 1.00000 1.00000 UTR NaN NaN NaN Phase 0 NaN NaN NaN Coding NaN NaN NaN Phase 1 NaN NaN NaN Intron NaN NaN NaN Phase 2 NaN NaN NaN Subgenic NaN NaN NaN Coding NaN NaN NaN Genic NaN NaN NaN BP_Extractor for Sequence contig_87517 - ID 906 Forward for Sequence contig_87517 - ID 906 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3234 0 0 0 Non Coding 3360 0 0 0 UTR 55 0 0 0 Phase 0 76 0 0 0 Coding 303 0 0 0 Phase 1 79 0 0 0 Intron 1 0 0 0 Phase 2 78 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.90008 1.00000 0.94741 Non Coding 0.93515 1.00000 0.96649 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Reverse for Sequence contig_87517 - ID 906 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 3456 0 0 0 Non Coding 3477 0 0 0 UTR 21 0 0 0 Phase 0 41 0 0 0 Coding 110 0 0 0 Phase 1 35 0 0 0 Intron 6 0 0 0 Phase 2 40 0 0 0 Precision Recall F1 Precision Recall F1 Intergenic 0.96187 1.00000 0.98056 Non Coding 0.96772 1.00000 0.98359 UTR NaN 0.00000 0.00000 Phase 0 NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Phase 1 NaN 0.00000 0.00000 Intron NaN 0.00000 0.00000 Phase 2 NaN 0.00000 0.00000 Subgenic NaN 0.00000 0.00000 Coding NaN 0.00000 0.00000 Genic NaN 0.00000 0.00000 Forward for Species - 0 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11162544 3074 19124 18059 Non Coding 12374064 43654 44341 45266 UTR 35338 129058 4622 3732 Phase 0 68192 298118 464 282 Coding 262181 2759 995960 14893 Phase 1 67752 262 297399 456 Intron 92777 2080 7741 851206 Phase 2 67693 454 271 296480 Precision Recall F1 Precision Recall F1 Intergenic 0.96622 0.99641 0.98108 Non Coding 0.98381 0.98935 0.98657 UTR 0.94223 0.74708 0.83338 Phase 0 0.87045 0.81219 0.84031 Coding 0.96935 0.78066 0.86483 Phase 1 0.86838 0.81286 0.83970 Intron 0.95868 0.89243 0.92437 Phase 2 0.86568 0.81250 0.83825 Subgenic 0.96441 0.82848 0.89129 Coding 0.86817 0.81251 0.83942 Genic 0.96293 0.82262 0.88726 Reverse for Species - 0 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 11094447 3745 18604 19976 Non Coding 12317415 45109 46251 46409 UTR 36805 139571 4895 3989 Phase 0 70896 312952 477 238 Coding 272134 2816 1044080 15344 Phase 1 70355 238 311815 514 Intron 101393 2795 8802 835752 Phase 2 70101 507 240 311631 Precision Recall F1 Precision Recall F1 Intergenic 0.96433 0.99620 0.98001 Non Coding 0.98313 0.98894 0.98603 UTR 0.93718 0.75338 0.83529 Phase 0 0.87220 0.81379 0.84198 Coding 0.96999 0.78245 0.86619 Phase 1 0.86909 0.81430 0.84081 Intron 0.95508 0.88091 0.91649 Phase 2 0.86856 0.81477 0.84080 Subgenic 0.96330 0.82336 0.88785 Coding 0.86995 0.81428 0.84120 Genic 0.96145 0.81811 0.88401 Total for Species - 0 ML v HP Class Intergenic UTR Coding Intron ML v HP Phase Non Coding Phase 0 Phase 1 Phase 2 Intergenic 22256991 6819 37728 38035 Non Coding 24691479 88763 90592 91675 UTR 72143 268629 9517 7721 Phase 0 139088 611070 941 520 Coding 534315 5575 2040040 30237 Phase 1 138107 500 609214 970 Intron 194170 4875 16543 1686958 Phase 2 137794 961 511 608111 Precision Recall F1 Precision Recall F1 Intergenic 0.96528 0.99630 0.98054 Non Coding 0.98347 0.98914 0.98630 UTR 0.93960 0.75034 0.83437 Phase 0 0.87135 0.81300 0.84117 Coding 0.96968 0.78157 0.86552 Phase 1 0.86874 0.81360 0.84027 Intron 0.95689 0.88668 0.92045 Phase 2 0.86715 0.81366 0.83955 Subgenic 0.96385 0.82589 0.88955 Coding 0.86908 0.81342 0.84033 Genic 0.96218 0.82034 0.88561 Total: 8917355bp across 1189 windows None starting to load test data into memory.. For h5 starting with species = b'': x shape: (2346, 21384, 4) Data loading of 2346 (total so far 2346) samples of data/X into memory took 1.46 secs Compressed data size of data/X is at least 0.0147 GB setting self.n_seqs to 2346, bc that is len of data/X 0 / 93 1 / 93 2 / 93 3 / 93 4 / 93 5 / 93 6 / 93 7 / 93 8 / 93 9 / 93 10 / 93 11 / 93 12 / 93 13 / 93 14 / 93 15 / 93 16 / 93 17 / 93 18 / 93 19 / 93 20 / 93 21 / 93 22 / 93 23 / 93 24 / 93 25 / 93 26 / 93 27 / 93 28 / 93 29 / 93 30 / 93 31 / 93 32 / 93 33 / 93 34 / 93 35 / 93 36 / 93 37 / 93 38 / 93 39 / 93 40 / 93 41 / 93 42 / 93 43 / 93 44 / 93 45 / 93 46 / 93 47 / 93 48 / 93 49 / 93 50 / 93 51 / 93 52 / 93 53 / 93 54 / 93 55 / 93 56 / 93 57 / 93 58 / 93 59 / 93 60 / 93 61 / 93 62 / 93 63 / 93 64 / 93 65 / 93 66 / 93 67 / 93 68 / 93 69 / 93 70 / 93 71 / 93 72 / 93 73 / 93 74 / 93 75 / 93 76 / 93 77 / 93 78 / 93 79 / 93 80 / 93 81 / 93 82 / 93 83 / 93 84 / 93 85 / 93 86 / 93 87 / 93 88 / 93 89 / 93 90 / 93 91 / 93 92 / 93 Neural network prediction done. Starting post processing. Helixer successfully finished the annotation of input_1/parasite.fa.ref.fa in 0.07 hours. GFF file written to helixer.gff3. + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/gffread:0.12.7--h9a82719_0 gffread -g input_1/parasite.fa.ref.fa -w helixer.exons.fasta -x helixer.cds.fasta helixer.gff3 + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/biocontainers/emboss:v6.6.0dfsg-7b1-deb_cv1 transeq -sequence helixer.cds.fasta -outseq tmp.helixer.cds.aa.fasta -frame 1 Translate nucleic acid sequences /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer: 行 60: 対応する `'' を探索中に予期しないファイル終了 (EOF) です PID: 920289 /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/pp 'annotation~Helixer' -c 8 -m 32 -l invertebrate_v0.3_m_0200.h5 -s 21384 input_1/parasite.fa Checking the realpath of input files. 1 script: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer Containers: biocontainers/emboss:v6.6.0dfsg-7b1-deb_cv1 c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 c2997108/helixer:v0.3.4_cuda_12.2.2-cudnn8 centos:centos6 quay.io/biocontainers/gffread:0.12.7--h9a82719_0 quay.io/biocontainers/seqkit:0.12.1--0 Checking singularity WARNING: passwd file doesn't exist in container, not updating WARNING: group file doesn't exist in container, not updating using singularity ++ set -o pipefail + set -eux + set -o pipefail ++ echo input_1/parasite.fa ++ grep '[.]gz$' ++ wc -l ++ true + '[' 0 = 1 ']' + awk '{if($0~"^>"){sub(/ .*/,"",$0)}; print $0}' input_1/parasite.fa + sed 's/\r//' + input_1=input_1/parasite.fa.ref.fa + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/gffread:0.12.7--h9a82719_0 gffread -g input_1/parasite.fa.ref.fa -w helixer.exons.fasta -x helixer.cds.fasta helixer.gff3 + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/biocontainers/emboss:v6.6.0dfsg-7b1-deb_cv1 transeq -sequence helixer.cds.fasta -outseq tmp.helixer.cds.aa.fasta -frame 1 Translate nucleic acid sequences + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/seqkit:0.12.1--0 seqkit fx2tab tmp.helixer.cds.aa.fasta + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 awk '-F\t' '{sub(/_1$/,"",$1); sub(/*$/,"",$(NF-1); print ">"$1; print $(NF-1)}' WARNING: Skipping mount /suikou/tool9/apptainer_v2023-07-21/x86_64/var/apptainer/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container awk: cmd. line:1: {sub(/_1$/,"",$1); sub(/*$/,"",$(NF-1); print ">"$1; print $(NF-1)} awk: cmd. line:1: ^ syntax error awk: cmd. line:1: {sub(/_1$/,"",$1); sub(/*$/,"",$(NF-1); print ">"$1; print $(NF-1)} awk: cmd. line:1: ^ syntax error awk: cmd. line:1: {sub(/_1$/,"",$1); sub(/*$/,"",$(NF-1); print ">"$1; print $(NF-1)} awk: cmd. line:1: ^ syntax error ++ onerror 40 ++ status=1 ++ script=/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer ++ line=40 ++ shift ++ set +x ------------------------------------------------------------ Error occured on /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer [Line 40]: Status 1 PID: 920291 User: yoshitake.kazutoshi Current directory: /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer Command line: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer ------------------------------------------------------------ PID: 921736 /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/pp 'annotation~Helixer' -c 8 -m 32 -l invertebrate_v0.3_m_0200.h5 -s 21384 input_1/parasite.fa Checking the realpath of input files. 1 script: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer Containers: biocontainers/emboss:v6.6.0dfsg-7b1-deb_cv1 c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 c2997108/helixer:v0.3.4_cuda_12.2.2-cudnn8 centos:centos6 quay.io/biocontainers/gffread:0.12.7--h9a82719_0 quay.io/biocontainers/seqkit:0.12.1--0 Checking singularity WARNING: passwd file doesn't exist in container, not updating WARNING: group file doesn't exist in container, not updating using singularity ++ set -o pipefail + set -eux + set -o pipefail ++ echo input_1/parasite.fa ++ grep '[.]gz$' ++ wc -l ++ true + '[' 0 = 1 ']' + awk '{if($0~"^>"){sub(/ .*/,"",$0)}; print $0}' input_1/parasite.fa + sed 's/\r//' + input_1=input_1/parasite.fa.ref.fa + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/gffread:0.12.7--h9a82719_0 gffread -g input_1/parasite.fa.ref.fa -w helixer.exons.fasta -x helixer.cds.fasta helixer.gff3 + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/biocontainers/emboss:v6.6.0dfsg-7b1-deb_cv1 transeq -sequence helixer.cds.fasta -outseq tmp.helixer.cds.aa.fasta -frame 1 Translate nucleic acid sequences + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/seqkit:0.12.1--0 seqkit fx2tab tmp.helixer.cds.aa.fasta + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 awk '-F\t' '{sub(/_1$/,"",$1); sub(/*$/,"",$(NF-1)); print ">"$1; print $(NF-1)}' WARNING: Skipping mount /suikou/tool9/apptainer_v2023-07-21/x86_64/var/apptainer/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container + rm -f tmp.helixer.cds.aa.fasta + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 blastp -query helixer.cds.aa.fasta -db /usr/local/Trinotate-Trinotate-v3.1.1/db/uniprot_sprot.pep -num_threads 8 -max_target_seqs 1 -outfmt '6 qseqid sseqid qlen slen pident length mismatch gapopen qstart qend sstart send evalue bitscore staxids stitle' -evalue 1e-5 Warning: [blastp] Examining 5 or more matches is recommended + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/seqkit:0.12.1--0 seqkit fx2tab helixer.cds.aa.fasta + awk '-F\t' 'FILENAME==ARGV[1]{name[$1]=$2; desc[$1]=$16; evalue[$1]=$13} FILENAME==ARGV[2]{print ">"$1" "name[$1]":"desc[$1]" evalue:"evalue[$1]; print $2}' helixer.cds.aa.fasta.uniprot.blastp /dev/stdin WARNING: Skipping mount /suikou/tool9/apptainer_v2023-07-21/x86_64/var/apptainer/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/seqkit:0.12.1--0 seqkit fx2tab helixer.cds.fasta + awk '-F\t' 'FILENAME==ARGV[1]{name[$1]=$2; desc[$1]=$16; evalue[$1]=$13} FILENAME==ARGV[2]{split($1,arr," "); print ">"$1" "name[arr[1]]":"desc[arr[1]]" evalue:"evalue[arr[1]]; print $2}' helixer.cds.aa.fasta.uniprot.blastp /dev/stdin WARNING: Skipping mount /suikou/tool9/apptainer_v2023-07-21/x86_64/var/apptainer/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 awk '-F\t' 'FILENAME==ARGV[1]{name[$1]=$2; desc[$1]=$16; evalue[$1]=$13} FILENAME==ARGV[2]{if($3=="gene"){print $0}else{str=$9; str2=""; sub(/.*transcript_id "/,"",str); sub(/".*/,"",str); str2=str"_"name[str]"_"desc[str]"_evalue-"evalue[str]; gsub(/[ /()=]/,"_",str2); gsub(str,str2,$0); print $0}}' helixer.cds.aa.fasta.uniprot.blastp helixer.gtf awk: cmd. line:1: fatal: cannot open file `helixer.gtf' for reading (No such file or directory) ++ onerror 45 ++ status=2 ++ script=/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer ++ line=45 ++ shift ++ set +x ------------------------------------------------------------ Error occured on /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer [Line 45]: Status 2 PID: 921743 User: yoshitake.kazutoshi Current directory: /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer Command line: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer ------------------------------------------------------------ PID: 1070219 /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/pp 'annotation~Helixer' -c 8 -m 32 -l invertebrate_v0.3_m_0200.h5 -s 21384 input_1/parasite.fa Checking the realpath of input files. 1 script: /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/PortablePipeline/PortablePipeline/scripts/annotation~Helixer Containers: biocontainers/emboss:v6.6.0dfsg-7b1-deb_cv1 c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 c2997108/helixer:v0.3.4_cuda_12.2.2-cudnn8 centos:centos6 quay.io/biocontainers/gffread:0.12.7--h9a82719_0 quay.io/biocontainers/seqkit:0.12.1--0 Checking singularity WARNING: passwd file doesn't exist in container, not updating WARNING: group file doesn't exist in container, not updating using singularity ++ set -o pipefail + set -eux + set -o pipefail ++ echo input_1/parasite.fa ++ grep '[.]gz$' ++ wc -l ++ true + '[' 0 = 1 ']' + awk '{if($0~"^>"){sub(/ .*/,"",$0)}; print $0}' input_1/parasite.fa + sed 's/\r//' + input_1=input_1/parasite.fa.ref.fa + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/gffread:0.12.7--h9a82719_0 gffread -g input_1/parasite.fa.ref.fa -w helixer.exons.fasta -x helixer.cds.fasta helixer.gff3 + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/biocontainers/emboss:v6.6.0dfsg-7b1-deb_cv1 transeq -sequence helixer.cds.fasta -outseq tmp.helixer.cds.aa.fasta -frame 1 Translate nucleic acid sequences + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/seqkit:0.12.1--0 seqkit fx2tab tmp.helixer.cds.aa.fasta + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 awk '-F\t' '{sub(/_1$/,"",$1); sub(/*$/,"",$(NF-1)); print ">"$1; print $(NF-1)}' WARNING: Skipping mount /suikou/tool9/apptainer_v2023-07-21/x86_64/var/apptainer/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container + rm -f tmp.helixer.cds.aa.fasta + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/seqkit:0.12.1--0 seqkit fx2tab helixer.cds.aa.fasta + awk '-F\t' 'FILENAME==ARGV[1]{name[$1]=$2; desc[$1]=$16; evalue[$1]=$13} FILENAME==ARGV[2]{print ">"$1" "name[$1]":"desc[$1]" evalue:"evalue[$1]; print $2}' helixer.cds.aa.fasta.uniprot.blastp /dev/stdin WARNING: Skipping mount /suikou/tool9/apptainer_v2023-07-21/x86_64/var/apptainer/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/quay.io/biocontainers/seqkit:0.12.1--0 seqkit fx2tab helixer.cds.fasta + awk '-F\t' 'FILENAME==ARGV[1]{name[$1]=$2; desc[$1]=$16; evalue[$1]=$13} FILENAME==ARGV[2]{split($1,arr," "); print ">"$1" "name[arr[1]]":"desc[arr[1]]" evalue:"evalue[arr[1]]; print $2}' helixer.cds.aa.fasta.uniprot.blastp /dev/stdin WARNING: Skipping mount /suikou/tool9/apptainer_v2023-07-21/x86_64/var/apptainer/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container + singularity exec --no-home -B /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer:/home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer --pwd /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer -B /suikou/files/m256y/yoshitake.kazutoshi:/suikou/files/m256y/yoshitake.kazutoshi /home/yoshitake.kazutoshi/img/c2997108/centos7:1-trinity_2.8.5-kallisto_0.46.0-blast_2.9.0-trinotate-3.1.1-R_3-kegg_2 awk '-F\t' 'FILENAME==ARGV[1]&&!($1 in name){name[$1]=$2; desc[$1]=$16; evalue[$1]=$13; newname[$1]=$1"_"$2"_"$16"_evalue-"$13; gsub(/[ /()=]/,"_",newname[$1])} FILENAME==ARGV[2]{OFS="\t"; if($0~"^#"){print $0}else{split($9,arr,";"); for(i in arr){split(arr[i],arr2,"="); str2=arr2[2]; for(j=3;j<=length(arr2);j++){str2=str2"="arr2[j]}; if(str2 in newname){arr[i]=arr2[1]"="newname[str2]}}; $9=arr[1]; for(i=2;i<=length(arr);i++){$9=$9";"arr[i]}; print $0}}' helixer.cds.aa.fasta.uniprot.blastp helixer.gff3 + post_processing + '[' 1 = 1 ']' + rm -f /home/yoshitake.kazutoshi/files/m256y/pp-dev/yoshitake/test/annotation~Helixer/pp-singularity-flag + '[' '' = y ']' + echo 0 + exit