#contig_id	alt_splicing_type	lend	rend	orient	supporting_pasa_asmbls	gene_annotations	supporing_transcripts	count_supporting_transcripts	alternative_overlapping_transcripts	count_alternative_transcripts
scaffold_7	spliced_intron	5916256	5917155	-	asmbl_50901	none	STRG.8897.1,blat.proc3825152.chain_1287	2	blat.proc3825152.chain_1288	1
scaffold_15	retained_exon	15906851	15906876	-	asmbl_14813	none	blat.proc3825158.chain_66	1	STRG.18975.1,blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_64	4
scaffold_23	spliced_intron	2585757	2586468	-	asmbl_30745	none	blat.proc3825160.chain_2778	1	STRG.25725.1,Trinity_GG_14322_c1_g1_i3,Trinity_GG_14322_c1_g1_i5,blat.proc3825160.chain_2775	4
scaffold_6	retained_intron	8460271	8460406	+	asmbl_47126,asmbl_47129	none	STRG.7725.1,STRG.7725.4,blat.proc3825168.chain_154	3	STRG.7725.3	1
scaffold_12	alt_donor	12285623	12285624	-	asmbl_8851	none	STRG.15127.1,blat.proc3825154.chain_3636,blat.proc3825154.chain_3637	3	STRG.15127.3	1
scaffold_23	skipped_exon	5578234	5578816	+	asmbl_31578,asmbl_31579,asmbl_31580	none	STRG.25933.1,STRG.25933.3,STRG.25933.5,blat.proc3825176.chain_2838,blat.proc3825176.chain_2839,blat.proc3825176.chain_2841	6	STRG.25933.2,STRG.25933.4,blat.proc3825176.chain_2834,blat.proc3825176.chain_2835,blat.proc3825176.chain_2837,blat.proc3825176.chain_2840	6
scaffold_9	alt_acceptor	12493864	12493865	-	asmbl_55383	none	STRG.11571.1,blat.proc3825152.chain_3745	2	STRG.11571.2	1
scaffold_13	retained_intron	2272160	2272772	-	asmbl_9438,asmbl_9446	none	STRG.15548.4,blat.proc3825156.chain_396	2	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9
scaffold_21	alternate_exon	5375411	5375575	-	asmbl_27649	none	STRG.24070.1,blat.proc3825160.chain_1217	2	blat.proc3825160.chain_1216	1
scaffold_18	alt_donor	1893642	1893643	-	asmbl_19653,asmbl_19657,asmbl_19659	none	STRG.21081.1,STRG.21081.10,STRG.21081.6,STRG.21081.9,blat.proc3825158.chain_2019	5	STRG.21081.3,STRG.21081.7,STRG.21081.8	3
scaffold_10	alt_acceptor	6705954	6705955	-	asmbl_4494	none	STRG.12500.1,blat.proc3825154.chain_1093	2	blat.proc3825154.chain_1094	1
scaffold_24	starts_in_intron	3881673	3881673	-	asmbl_32858	none	Trinity_GG_14866_c0_g1_i1,blat.proc3825160.chain_3704	2	STRG.26567.1	1
scaffold_12	starts_in_intron	38067	38067	-	asmbl_8265	none	blat.proc3825154.chain_2933	1	STRG.14415.1,blat.proc3825154.chain_2934,blat.proc3825154.chain_2935	3
scaffold_13	alt_donor	9338325	9338326	-	asmbl_10023,asmbl_10025	none	STRG.16201.1,STRG.16201.3,blat.proc3825156.chain_1010	3	STRG.16201.2,blat.proc3825156.chain_1011	2
scaffold_26	alt_acceptor	6319314	6319315	-	asmbl_35671,asmbl_35672	none	STRG.28328.1,STRG.28328.3,blat.proc3825162.chain_1491,blat.proc3825162.chain_1492	4	STRG.28328.2	1
scaffold_12	ends_in_intron	8823071	8823071	+	asmbl_7829	none	blat.proc3825170.chain_3466	1	STRG.14893.1,Trinity_GG_25551_c0_g1_i2,Trinity_GG_25551_c0_g1_i5,Trinity_GG_25551_c0_g1_i6,blat.proc3825170.chain_3463,blat.proc3825170.chain_3464,blat.proc3825170.chain_3465	7
scaffold_8	alt_donor	3615695	3615696	+	asmbl_52790	none	STRG.9863.3	1	STRG.9863.2,STRG.9863.4,blat.proc3825168.chain_2408	3
scaffold_23	alt_acceptor	10990900	10990901	-	asmbl_31187	none	STRG.26306.2	1	STRG.26306.1,blat.proc3825160.chain_3398	2
scaffold_2	alternate_exon	18720475	18720635	+	asmbl_25239	none	blat.proc3825164.chain_3011	1	STRG.2752.2	1
scaffold_17	alt_acceptor	3434531	3434532	-	asmbl_17819	none	STRG.20126.1	1	STRG.20126.2	1
scaffold_13	alt_donor	2500660	2500661	+	asmbl_10617	none	STRG.15558.1,Trinity_GG_25825_c0_g1_i2,blat.proc3825172.chain_241	3	STRG.15558.2,Trinity_GG_25825_c0_g1_i1,blat.proc3825172.chain_240	3
scaffold_13	starts_in_intron	2475471	2475471	-	asmbl_9460	none	Trinity_GG_8724_c0_g1_i1,blat.proc3825156.chain_444	2	STRG.15554.1,STRG.15554.2,blat.proc3825156.chain_443,blat.proc3825156.chain_445	4
scaffold_11	alt_acceptor	335278	335279	+	asmbl_5285,asmbl_5287	none	STRG.13269.2,STRG.13269.3,blat.proc3825170.chain_1831,blat.proc3825170.chain_1834	4	STRG.13269.1,blat.proc3825170.chain_1833	2
scaffold_5	retained_intron	14261375	14261517	+	asmbl_45912	none	Trinity_GG_20907_c0_g1_i4,blat.proc3825166.chain_2784	2	STRG.6638.1,STRG.6638.2,STRG.6638.3,STRG.6638.4,Trinity_GG_20907_c0_g1_i8,blat.proc3825166.chain_2783,blat.proc3825166.chain_2785,blat.proc3825166.chain_2786,blat.proc3825166.chain_2787,blat.proc3825166.chain_2788,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	12
scaffold_3	alt_acceptor	13700198	13700199	+	asmbl_40450,asmbl_40452,asmbl_40453	none	STRG.3717.1,blat.proc3825166.chain_218,blat.proc3825166.chain_221,blat.proc3825166.chain_222	4	STRG.3717.2	1
scaffold_8	retained_exon	11742081	11742171	-	asmbl_52161	none	STRG.10376.2,blat.proc3825152.chain_2543	2	STRG.10376.1,blat.proc3825152.chain_2544	2
scaffold_2	alternate_exon	9190185	9190308	-	asmbl_23366	none	blat.proc3825148.chain_2202	1	STRG.2171.2,blat.proc3825148.chain_2198,blat.proc3825148.chain_2201,blat.proc3825148.chain_2203	4
scaffold_7	retained_intron	15270953	15271287	+	asmbl_50434,asmbl_50435	none	blat.proc3825168.chain_2121,blat.proc3825168.chain_2126	2	STRG.9546.4,blat.proc3825168.chain_2120,blat.proc3825168.chain_2123	3
scaffold_1	retained_intron	9254137	9254609	+	asmbl_1968,asmbl_1971	none	STRG.619.1,STRG.619.2,Trinity_GG_17679_c0_g1_i2,blat.proc3825164.chain_722	4	STRG.619.3,Trinity_GG_17679_c0_g1_i3,blat.proc3825164.chain_721	3
scaffold_9	alt_acceptor	573406	573407	+	asmbl_53773	none	Trinity_GG_23309_c0_g1_i4,blat.proc3825168.chain_3341	2	STRG.10788.2	1
scaffold_6	alt_donor	18836317	18836318	+	asmbl_47856,asmbl_47860	none	STRG.8556.5,blat.proc3825168.chain_963	2	STRG.8556.1,STRG.8556.2,STRG.8556.3,STRG.8556.4,STRG.8556.6,Trinity_GG_21987_c0_g1_i5,blat.proc3825168.chain_959,blat.proc3825168.chain_960,blat.proc3825168.chain_961,blat.proc3825168.chain_962	10
scaffold_18	alt_donor	1894711	1894712	-	asmbl_19655,asmbl_19658,asmbl_19660,asmbl_19661,asmbl_19662,asmbl_19665	none	blat.proc3825158.chain_2010,blat.proc3825158.chain_2011,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	8	STRG.21081.3,STRG.21081.7,STRG.21081.8	3
scaffold_21	spliced_intron	7367393	7367476	-	asmbl_27800	none	STRG.24259.1,blat.proc3825160.chain_1410	2	blat.proc3825160.chain_1407,blat.proc3825160.chain_1408	2
scaffold_15	starts_in_intron	16264428	16264428	-	asmbl_14821	none	Trinity_GG_10638_c0_g1_i1,blat.proc3825158.chain_70	2	STRG.18980.1,Trinity_GG_10638_c0_g1_i2,blat.proc3825158.chain_69	3
scaffold_24	alt_acceptor	10605540	10605541	+	asmbl_32581	none	Trinity_GG_32236_c0_g1_i3,blat.proc3825178.chain_219	2	STRG.27028.1,STRG.27028.2,STRG.27028.3,Trinity_GG_32236_c0_g1_i5,blat.proc3825178.chain_218,blat.proc3825178.chain_220,blat.proc3825178.chain_221	7
scaffold_3	alternate_exon	3097071	3097149	-	asmbl_38754	none	STRG.3064.2,blat.proc3825148.chain_2923	2	STRG.3064.1,blat.proc3825148.chain_2922	2
scaffold_27	alt_acceptor	2881506	2881507	+	asmbl_36142	none	STRG.28771.1,blat.proc3825178.chain_1941	2	STRG.28771.2,STRG.28771.3,blat.proc3825178.chain_1938,blat.proc3825178.chain_1939,blat.proc3825178.chain_1940,blat.proc3825178.chain_1943	6
scaffold_8	retained_intron	16502745	16503680	-	asmbl_52402,asmbl_52404	none	Trinity_GG_5934_c0_g1_i21,blat.proc3825152.chain_2928,blat.proc3825152.chain_2938	3	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,Trinity_GG_5934_c0_g1_i12,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2935,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	13
scaffold_6	alternate_exon	12554879	12554983	-	asmbl_48830	none	blat.proc3825152.chain_427	1	STRG.8017.3,blat.proc3825152.chain_421	2
scaffold_1	retained_intron	8644831	8644990	-	asmbl_467,asmbl_469,asmbl_471,asmbl_472	none	blat.proc3825148.chain_581,blat.proc3825148.chain_582,blat.proc3825148.chain_584,blat.proc3825148.chain_586	4	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_585	3
scaffold_10	starts_in_intron	9061788	9061788	-	asmbl_4671	none	blat.proc3825154.chain_1199	1	STRG.12655.2,blat.proc3825154.chain_1198	2
scaffold_17	starts_in_intron	14647402	14647402	-	asmbl_18442	none	blat.proc3825158.chain_1904	1	STRG.20937.1,blat.proc3825158.chain_1903	2
scaffold_13	alt_donor	7014563	7014564	-	asmbl_9835	none	STRG.15991.1,blat.proc3825156.chain_794	2	STRG.15991.2	1
scaffold_17	alt_donor	6214502	6214503	+	asmbl_18843	none	STRG.20301.2	1	STRG.20301.1,Trinity_GG_28428_c0_g1_i2,blat.proc3825174.chain_1135	3
scaffold_23	spliced_intron	10978895	10979242	+	asmbl_31898,asmbl_31902,asmbl_31905,asmbl_31906	none	STRG.26307.1,blat.proc3825176.chain_3178,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5	STRG.26307.2,STRG.26307.4,Trinity_GG_31796_c0_g1_i6,blat.proc3825176.chain_3177,blat.proc3825176.chain_3179,blat.proc3825176.chain_3181	6
scaffold_2	retained_exon	10878680	10878697	+	asmbl_24736,asmbl_24741	none	STRG.2245.1,Trinity_GG_18581_c0_g1_i6,blat.proc3825164.chain_2437,blat.proc3825164.chain_2438	4	STRG.2245.2,blat.proc3825164.chain_2436	2
scaffold_7	alt_donor	13213393	13213394	+	asmbl_50323	none	STRG.9429.3	1	STRG.9429.4,blat.proc3825168.chain_1942	2
scaffold_13	alt_donor	16460302	16460303	-	asmbl_10302	none	Trinity_GG_9330_c0_g1_i3,blat.proc3825156.chain_1487	2	blat.proc3825156.chain_1485	1
scaffold_3	alt_donor	10628322	10628323	+	asmbl_40282,asmbl_40283,asmbl_40290	none	STRG.3513.5,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3689	4	STRG.3513.1,STRG.3513.2,STRG.3513.4,blat.proc3825164.chain_3683,blat.proc3825164.chain_3684,blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688	9
scaffold_12	alt_acceptor	11383589	11383590	-	asmbl_8814	none	STRG.15076.1	1	STRG.15076.2	1
scaffold_11	ends_in_intron	10185613	10185613	+	asmbl_5929	none	blat.proc3825170.chain_2523	1	STRG.14031.1,blat.proc3825170.chain_2522	2
scaffold_15	spliced_intron	1712462	1712546	+	asmbl_15032,asmbl_15033,asmbl_15038	none	STRG.17986.1,STRG.17986.2,STRG.17986.3,blat.proc3825172.chain_2711,blat.proc3825172.chain_2715	5	blat.proc3825172.chain_2710,blat.proc3825172.chain_2712,blat.proc3825172.chain_2714	3
scaffold_13	alt_donor	14564864	14564865	-	asmbl_10198	none	STRG.16504.1,blat.proc3825156.chain_1271	2	STRG.16504.3,STRG.16504.4,STRG.16504.5,Trinity_GG_9195_c1_g1_i6,blat.proc3825156.chain_1267,blat.proc3825156.chain_1270,blat.proc3825156.chain_1272	7
scaffold_27	retained_exon	627096	627300	-	asmbl_36701,asmbl_36707	none	STRG.28583.2,STRG.28583.4,blat.proc3825162.chain_1824	3	STRG.28583.3,blat.proc3825162.chain_1825	2
scaffold_1	spliced_intron	13433544	13433580	-	asmbl_803	none	STRG.960.1,blat.proc3825148.chain_926	2	STRG.960.2,Trinity_GG_494_c0_g1_i2,blat.proc3825148.chain_925	3
scaffold_17	alt_donor	5997610	5997611	+	asmbl_18834,asmbl_18838	none	STRG.20285.4,STRG.20285.5	2	STRG.20285.1,STRG.20285.2,blat.proc3825174.chain_1141	3
scaffold_7	spliced_intron	9583534	9583622	+	asmbl_50083	none	STRG.9149.2,blat.proc3825168.chain_1666	2	STRG.9149.1,Trinity_GG_22392_c0_g1_i1,blat.proc3825168.chain_1665	3
scaffold_20	alt_donor	1624143	1624144	-	asmbl_25595	none	STRG.22899.3	1	STRG.22899.1,STRG.22899.2	2
scaffold_6	alt_acceptor	18836632	18836633	+	asmbl_47852,asmbl_47853,asmbl_47854,asmbl_47855,asmbl_47856,asmbl_47857,asmbl_47858,asmbl_47860	none	STRG.8556.1,STRG.8556.2,STRG.8556.3,STRG.8556.4,STRG.8556.5,Trinity_GG_21987_c0_g1_i5,blat.proc3825168.chain_959,blat.proc3825168.chain_960,blat.proc3825168.chain_961,blat.proc3825168.chain_962,blat.proc3825168.chain_963	11	STRG.8556.6	1
scaffold_3	skipped_exon	7924972	7927366	+	asmbl_40184	none	STRG.3380.1	1	STRG.3380.3	1
scaffold_14	spliced_intron	6283532	6283649	+	asmbl_12056,asmbl_12057,asmbl_12058	none	STRG.17079.1,STRG.17079.2,STRG.17079.3,blat.proc3825172.chain_1848,blat.proc3825172.chain_1849,blat.proc3825172.chain_1853	6	STRG.17079.4,STRG.17079.5,blat.proc3825172.chain_1851	3
scaffold_9	ends_in_intron	11552485	11552485	-	asmbl_55298	none	Trinity_GG_6336_c0_g1_i4,blat.proc3825152.chain_3706	2	STRG.11473.1,STRG.11473.2,STRG.11473.3,blat.proc3825152.chain_3707,blat.proc3825152.chain_3708,blat.proc3825152.chain_3710	6
scaffold_15	alt_donor	2782592	2782593	-	asmbl_14049	none	STRG.18069.2	1	STRG.18069.3,blat.proc3825156.chain_2898	2
scaffold_9	spliced_intron	11842283	11842383	-	asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55329,asmbl_55330,asmbl_55331	none	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3664	7	blat.proc3825152.chain_3663	1
scaffold_13	spliced_intron	3264232	3264348	+	asmbl_10675	none	STRG.15636.2,blat.proc3825172.chain_403	2	blat.proc3825172.chain_404	1
scaffold_18	starts_in_intron	220343	220343	+	asmbl_20282	none	Trinity_GG_28854_c0_g1_i1,blat.proc3825174.chain_1908	2	STRG.20975.1,blat.proc3825174.chain_1909,blat.proc3825174.chain_1910	3
scaffold_19	alt_donor	11560030	11560031	-	asmbl_22422	none	STRG.22492.2,Trinity_GG_12521_c0_g1_i4,blat.proc3825158.chain_3266	3	STRG.22492.1,Trinity_GG_12521_c0_g1_i2,blat.proc3825158.chain_3269	3
scaffold_4	alt_acceptor	3279223	3279224	+	asmbl_41169	none	Trinity_GG_19627_c0_g1_i1,blat.proc3825166.chain_609	2	STRG.4256.1,Trinity_GG_19627_c0_g1_i3,blat.proc3825166.chain_610	3
scaffold_26	alternate_exon	4596375	4599451	-	asmbl_35568	none	STRG.28182.1,blat.proc3825162.chain_1436	2	STRG.28182.2,Trinity_GG_15782_c1_g1_i1,blat.proc3825162.chain_1439	3
scaffold_1	alt_acceptor	14075810	14075811	+	asmbl_2330	none	STRG.1003.1,Trinity_GG_17903_c0_g1_i3,blat.proc3825164.chain_1138	3	Trinity_GG_17903_c0_g1_i4,blat.proc3825164.chain_1139	2
scaffold_23	ends_in_intron	10976539	10976539	+	asmbl_31895	none	blat.proc3825176.chain_3176	1	STRG.26307.1,STRG.26307.4,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	6
scaffold_7	retained_intron	10910943	10910963	-	asmbl_51145	none	STRG.9251.3,blat.proc3825152.chain_1600	2	STRG.9251.2	1
scaffold_13	spliced_intron	8518420	8518604	+	asmbl_11134	none	STRG.16127.1,blat.proc3825172.chain_902	2	Trinity_GG_26177_c0_g1_i1,Trinity_GG_26177_c0_g1_i3,blat.proc3825172.chain_900	3
scaffold_9	spliced_intron	12112505	12112865	+	asmbl_54411,asmbl_54412,asmbl_54413	none	STRG.11537.2,STRG.11537.3,blat.proc3825170.chain_369	3	blat.proc3825170.chain_367	1
scaffold_22	spliced_intron	11133580	11133834	-	asmbl_29646	none	blat.proc3825160.chain_2604	1	STRG.25445.2	1
scaffold_21	ends_in_intron	2628759	2628759	+	asmbl_28417	none	blat.proc3825176.chain_1119	1	STRG.23898.1,blat.proc3825176.chain_1118	2
scaffold_1	alt_acceptor	17524289	17524290	-	asmbl_1034	none	STRG.1212.1,Trinity_GG_632_c0_g1_i1,blat.proc3825148.chain_1200	3	STRG.1211.2	1
scaffold_15	skipped_exon	15409801	15410182	+	asmbl_15772	none	STRG.18930.10	1	STRG.18930.1,STRG.18930.2,STRG.18930.9,blat.proc3825172.chain_3588,blat.proc3825172.chain_3590	5
scaffold_1	retained_intron	8733024	8733104	-	asmbl_484	none	blat.proc3825148.chain_571	1	STRG.576.1,blat.proc3825148.chain_569,blat.proc3825148.chain_570	3
scaffold_10	skipped_exon	9552657	9554812	+	asmbl_3397,asmbl_3404	none	STRG.12711.2,STRG.12711.3	2	STRG.12711.1	1
scaffold_9	alt_donor	13607405	13607406	+	asmbl_54506,asmbl_54507	none	STRG.11647.3,blat.proc3825170.chain_453,blat.proc3825170.chain_454	3	STRG.11647.4	1
scaffold_6	alt_donor	11482302	11482303	+	asmbl_47326,asmbl_47330,asmbl_47331,asmbl_47332	none	STRG.7943.1,STRG.7943.3,blat.proc3825168.chain_310,blat.proc3825168.chain_312,blat.proc3825168.chain_314	5	STRG.7943.2,blat.proc3825168.chain_309	2
scaffold_2	spliced_intron	14559023	14559185	+	asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961	none	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11	blat.proc3825164.chain_2651	1
scaffold_19	retained_intron	12487325	12488732	-	asmbl_22501	none	Trinity_GG_12561_c0_g2_i1,Trinity_GG_12561_c1_g1_i1,blat.proc3825158.chain_3348,blat.proc3825158.chain_3349	4	STRG.22589.2,Trinity_GG_12561_c0_g1_i3,blat.proc3825158.chain_3345	3
scaffold_13	alt_donor	2375906	2375907	-	asmbl_9457	none	STRG.15553.3,blat.proc3825156.chain_449	2	STRG.15553.1,STRG.15553.2,STRG.15553.4,blat.proc3825156.chain_448,blat.proc3825156.chain_450	5
scaffold_5	retained_intron	10290152	10290283	-	asmbl_44336	none	blat.proc3825150.chain_2521	1	STRG.6329.1,blat.proc3825150.chain_2522	2
scaffold_14	alternate_exon	15831876	15831984	-	asmbl_13758	none	STRG.17828.1	1	STRG.17828.2	1
scaffold_28	retained_exon	3740835	3740885	-	asmbl_38161,asmbl_38162,asmbl_38163,asmbl_38164,asmbl_38165,asmbl_38166,asmbl_38169	none	STRG.29587.1,STRG.29587.2,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2739	7	STRG.29587.3	1
scaffold_22	starts_in_intron	1707004	1707004	-	asmbl_29150	none	blat.proc3825160.chain_1960	1	STRG.24761.1,STRG.24761.2,Trinity_GG_13841_c0_g1_i1,Trinity_GG_13841_c0_g1_i3,blat.proc3825160.chain_1958,blat.proc3825160.chain_1959	6
scaffold_17	spliced_intron	14037114	14037195	-	asmbl_18402	none	STRG.20881.2	1	STRG.20881.1,STRG.20881.3	2
scaffold_21	alt_donor	730900	730901	+	asmbl_28289	none	STRG.23764.2,Trinity_GG_30474_c0_g1_i2,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_969,blat.proc3825176.chain_971	5	STRG.23764.4,STRG.23764.5	2
scaffold_5	retained_exon	11992177	11993127	-	asmbl_44429,asmbl_44430	none	STRG.6453.8,STRG.6453.9	2	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3
scaffold_23	alt_donor	6912279	6912280	-	asmbl_30992	none	STRG.26021.3	1	STRG.26021.1,STRG.26021.2,blat.proc3825160.chain_3178,blat.proc3825160.chain_3180	4
scaffold_9	skipped_exon	17851315	17852001	+	asmbl_54655,asmbl_54657	none	STRG.11873.2,Trinity_GG_23881_c0_g1_i5,blat.proc3825170.chain_570	3	STRG.11873.1,Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_572	3
scaffold_23	retained_exon	4228479	4229383	-	asmbl_30849	none	STRG.25839.2	1	STRG.25839.3,blat.proc3825160.chain_2986,blat.proc3825160.chain_2988	3
scaffold_1	starts_in_intron	1240001	1240001	+	asmbl_1468	none	Trinity_GG_17373_c1_g1_i1,blat.proc3825164.chain_188	2	STRG.70.1,blat.proc3825164.chain_189	2
scaffold_18	spliced_intron	8912486	8912797	-	asmbl_20053	none	blat.proc3825158.chain_2453	1	STRG.21558.3,STRG.21558.6,STRG.21558.7,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451	7
scaffold_6	spliced_intron	14511822	14511873	+	asmbl_47622	none	STRG.8218.1	1	Trinity_GG_21838_c0_g1_i2,blat.proc3825168.chain_712	2
scaffold_5	ends_in_intron	8788302	8788302	+	asmbl_45575	none	blat.proc3825166.chain_2449	1	STRG.6219.1,Trinity_GG_20718_c0_g1_i5,blat.proc3825166.chain_2446,blat.proc3825166.chain_2447	4
scaffold_27	alt_acceptor	638380	638381	-	asmbl_36708	none	Trinity_GG_16002_c1_g1_i5,blat.proc3825162.chain_1842	2	STRG.28585.1,Trinity_GG_16002_c1_g1_i6,blat.proc3825162.chain_1843	3
scaffold_10	spliced_intron	4149920	4150006	-	asmbl_4267	none	STRG.12252.2	1	STRG.12252.1,Trinity_GG_6814_c1_g1_i1,blat.proc3825154.chain_770	3
scaffold_8	spliced_intron	18541820	18542760	+	asmbl_53563,asmbl_53566	none	STRG.10751.2,STRG.10751.3,Trinity_GG_23268_c0_g1_i3,blat.proc3825168.chain_3270,blat.proc3825168.chain_3271	5	STRG.10751.1,blat.proc3825168.chain_3272	2
scaffold_15	retained_intron	15188079	15189525	+	asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737	none	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	6	blat.proc3825172.chain_3530	1
scaffold_1	alternate_exon	19038553	19042447	+	asmbl_2579	none	STRG.1335.1	1	STRG.1335.7	1
scaffold_9	retained_intron	11842724	11842821	-	asmbl_55332	none	blat.proc3825152.chain_3663	1	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3664	8
scaffold_27	ends_in_intron	7607280	7607280	+	asmbl_36475	none	STRG.29128.1	1	STRG.29128.2	1
scaffold_8	spliced_intron	4784352	4784444	-	asmbl_51797	none	STRG.9942.1,blat.proc3825152.chain_2218	2	blat.proc3825152.chain_2219	1
scaffold_4	alternate_exon	18275597	18275679	-	asmbl_43356	none	STRG.5426.2	1	STRG.5426.1,STRG.5426.3	2
scaffold_17	alt_acceptor	1447704	1447705	-	asmbl_17716	none	STRG.19986.1	1	blat.proc3825158.chain_1047	1
scaffold_9	alt_acceptor	5019200	5019201	+	asmbl_53978	none	STRG.11074.2,Trinity_GG_23480_c0_g1_i2,blat.proc3825168.chain_3599	3	Trinity_GG_23480_c0_g1_i3,blat.proc3825168.chain_3600	2
scaffold_20	spliced_intron	1469067	1469176	-	asmbl_25572,asmbl_25573,asmbl_25574	none	STRG.22868.1,STRG.22868.2,STRG.22868.3,blat.proc3825158.chain_3734,blat.proc3825158.chain_3735	5	STRG.22868.4,Trinity_GG_12770_c0_g1_i3,blat.proc3825158.chain_3733	3
scaffold_18	alt_donor	1324811	1324812	+	asmbl_20336,asmbl_20340	none	STRG.21023.1,blat.proc3825174.chain_1860,blat.proc3825174.chain_1862	3	STRG.21023.2,STRG.21023.3,blat.proc3825174.chain_1861	3
scaffold_7	spliced_intron	18945539	18945573	-	asmbl_51507	none	STRG.9695.2	1	blat.proc3825152.chain_2041	1
scaffold_2	alt_donor	13077769	13077770	-	asmbl_23488,asmbl_23489,asmbl_23490,asmbl_23491	none	STRG.2337.2,STRG.2337.3,STRG.2337.5,blat.proc3825148.chain_2341,blat.proc3825148.chain_2342,blat.proc3825148.chain_2343	6	STRG.2337.1,STRG.2337.4,blat.proc3825148.chain_2340,blat.proc3825148.chain_2345	4
scaffold_5	alt_acceptor	11639336	11639337	+	asmbl_45753	none	STRG.6424.2,Trinity_GG_20751_c0_g1_i3,blat.proc3825166.chain_2519	3	STRG.6424.3,Trinity_GG_20751_c0_g1_i2,blat.proc3825166.chain_2517	3
scaffold_2	alternate_exon	6906166	6906418	+	asmbl_24516	none	blat.proc3825164.chain_2155	1	STRG.2036.3	1
scaffold_17	spliced_intron	3998088	3998274	+	asmbl_18756,asmbl_18758	none	STRG.20160.2,blat.proc3825174.chain_1033	2	STRG.20160.1,STRG.20160.3,STRG.20160.4,blat.proc3825174.chain_1031,blat.proc3825174.chain_1032,blat.proc3825174.chain_1034,blat.proc3825174.chain_1035	7
scaffold_1	alt_acceptor	18042598	18042599	-	asmbl_1083,asmbl_1084	none	STRG.1270.1,blat.proc3825148.chain_1265,blat.proc3825148.chain_1266	3	STRG.1270.2	1
scaffold_9	alt_donor	571057	571058	+	asmbl_53772	none	STRG.10788.3	1	STRG.10788.1,STRG.10788.2	2
scaffold_10	ends_in_intron	11595414	11595414	+	asmbl_3484	none	Trinity_GG_24375_c2_g1_i1	1	STRG.12815.1,STRG.12815.2,STRG.12815.3	3
scaffold_20	alt_acceptor	1469911	1469912	-	asmbl_25573,asmbl_25577	none	STRG.22868.3,blat.proc3825158.chain_3737	2	STRG.22868.2,STRG.22868.4,blat.proc3825158.chain_3739	3
scaffold_14	spliced_intron	12628130	12628260	-	asmbl_13579,asmbl_13580,asmbl_13581,asmbl_13582,asmbl_13586	none	STRG.17582.1,STRG.17582.2,STRG.17582.3,blat.proc3825156.chain_2416,blat.proc3825156.chain_2417,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422	9	STRG.17582.4,blat.proc3825156.chain_2420,blat.proc3825156.chain_2424	3
scaffold_322	spliced_intron	6574	6737	-	asmbl_40972	none	STRG.30281.2	1	Trinity_GG_16990_c0_g1_i5,blat.proc3825162.chain_3412	2
scaffold_3	retained_exon	6822082	6822198	+	asmbl_40134	none	STRG.3308.1	1	STRG.3308.2	1
scaffold_6	ends_in_intron	3053593	3053593	+	asmbl_46799,asmbl_46804	none	blat.proc3825166.chain_3527,blat.proc3825166.chain_3528	2	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4
scaffold_10	alternate_exon	11882010	11882094	-	asmbl_4794	none	STRG.12826.2	1	STRG.12826.1	1
scaffold_1	starts_in_intron	5232873	5232873	-	asmbl_252	none	blat.proc3825148.chain_290,blat.proc3825148.chain_291	2	STRG.334.1	1
scaffold_19	retained_intron	11483212	11483436	-	asmbl_22404,asmbl_22406,asmbl_22410	none	STRG.22486.1,Trinity_GG_12512_c0_g1_i1,blat.proc3825158.chain_3245,blat.proc3825158.chain_3246,blat.proc3825158.chain_3250	5	STRG.22486.2,blat.proc3825158.chain_3247	2
scaffold_2	retained_exon	14136505	14136572	-	asmbl_23558,asmbl_23559,asmbl_23562	none	STRG.2408.1,STRG.2408.3,blat.proc3825148.chain_2401,blat.proc3825148.chain_2402	4	blat.proc3825148.chain_2403	1
scaffold_7	retained_intron	6655482	6656656	-	asmbl_50929	none	STRG.8943.2,Trinity_GG_5086_c0_g1_i5,blat.proc3825152.chain_1404	3	STRG.8943.1,blat.proc3825152.chain_1403,blat.proc3825152.chain_1405,blat.proc3825152.chain_1407	4
scaffold_10	starts_in_intron	3320251	3320251	-	asmbl_4188	none	Trinity_GG_6757_c1_g1_i1,blat.proc3825154.chain_685	2	STRG.12166.1	1
scaffold_5	ends_in_intron	18194004	18194004	+	asmbl_46214	none	Trinity_GG_21130_c0_g1_i4,blat.proc3825166.chain_3145	2	STRG.6958.1,Trinity_GG_21130_c0_g1_i2,Trinity_GG_21130_c0_g1_i3,blat.proc3825166.chain_3143,blat.proc3825166.chain_3146	5
scaffold_27	alternate_exon	934518	934677	-	asmbl_36718,asmbl_36720	none	STRG.28588.1,blat.proc3825162.chain_1833,blat.proc3825162.chain_1835	3	STRG.28588.2,STRG.28588.3,STRG.28588.4,blat.proc3825162.chain_1834	4
scaffold_12	starts_in_intron	7392036	7392036	-	asmbl_8577	none	blat.proc3825154.chain_3362	1	STRG.14823.1,blat.proc3825154.chain_3363,blat.proc3825154.chain_3364	3
scaffold_16	ends_in_intron	8087742	8087742	-	asmbl_17228,asmbl_17230,asmbl_17231	none	Trinity_GG_10909_c0_g1_i3,blat.proc3825158.chain_572,blat.proc3825158.chain_573,blat.proc3825158.chain_574	4	STRG.19454.1	1
scaffold_13	retained_intron	5575373	5575506	-	asmbl_9697,asmbl_9698	none	STRG.15857.1,STRG.15857.2,blat.proc3825156.chain_740,blat.proc3825156.chain_741	4	STRG.15857.3	1
scaffold_13	retained_intron	3055042	3055287	-	asmbl_9511	none	STRG.15613.3	1	STRG.15613.1,STRG.15613.2,blat.proc3825156.chain_465	3
scaffold_2	alt_donor	8055625	8055626	-	asmbl_23304	none	STRG.2094.1,blat.proc3825148.chain_2121	2	STRG.2094.2,blat.proc3825148.chain_2117,blat.proc3825148.chain_2119	3
scaffold_17	retained_exon	2355867	2355972	+	asmbl_18639,asmbl_18640	none	STRG.20030.2,STRG.20030.7	2	STRG.20030.1,blat.proc3825174.chain_907,blat.proc3825174.chain_909	3
scaffold_19	ends_in_intron	6203856	6203856	+	asmbl_21393	none	STRG.22150.1,blat.proc3825174.chain_3113,blat.proc3825174.chain_3114	3	STRG.22150.2,blat.proc3825174.chain_3111	2
scaffold_6	retained_intron	1584416	1584521	+	asmbl_46723	none	Trinity_GG_21288_c2_g1_i2	1	STRG.7208.1	1
scaffold_2	alt_donor	4680572	4680573	+	asmbl_24376	none	STRG.1894.1,blat.proc3825164.chain_1933	2	blat.proc3825164.chain_1934	1
scaffold_14	ends_in_intron	15324644	15324644	-	asmbl_13709	none	Trinity_GG_9982_c0_g1_i1,blat.proc3825156.chain_2585	2	STRG.17764.1,blat.proc3825156.chain_2584	2
scaffold_28	alt_acceptor	8330036	8330037	-	asmbl_38458	none	STRG.29903.2,blat.proc3825162.chain_3083	2	STRG.29903.1,blat.proc3825162.chain_3082	2
scaffold_22	starts_in_intron	714969	714969	-	asmbl_29118	none	blat.proc3825160.chain_1884	1	STRG.24724.2,blat.proc3825160.chain_1885	2
scaffold_8	retained_intron	10601114	10601193	-	asmbl_52113	none	Trinity_GG_5721_c0_g1_i2,blat.proc3825152.chain_2530	2	STRG.10299.1,blat.proc3825152.chain_2531	2
scaffold_26	alt_acceptor	3790169	3790170	+	asmbl_34833	none	STRG.28067.1	1	STRG.28067.2,STRG.28067.3	2
scaffold_19	retained_intron	13236971	13237060	-	asmbl_22614	none	STRG.22653.4,blat.proc3825158.chain_3426	2	STRG.22653.1,STRG.22653.2,STRG.22653.3,blat.proc3825158.chain_3423,blat.proc3825158.chain_3425,blat.proc3825158.chain_3427	6
scaffold_5	retained_exon	14680362	14680453	+	asmbl_45954	none	STRG.6672.1,Trinity_GG_20943_c0_g1_i4,blat.proc3825166.chain_2838	3	STRG.6672.2,Trinity_GG_20943_c0_g1_i1,blat.proc3825166.chain_2837	3
scaffold_4	spliced_intron	16869332	16869415	-	asmbl_43225,asmbl_43228,asmbl_43229,asmbl_43230	none	STRG.5273.1,STRG.5273.2,STRG.5273.3,STRG.5273.4,blat.proc3825150.chain_1392	5	blat.proc3825150.chain_1391	1
scaffold_12	ends_in_intron	7431111	7431111	+	asmbl_7757	none	blat.proc3825170.chain_3366	1	STRG.14827.1,STRG.14827.2,Trinity_GG_25502_c0_g1_i1,blat.proc3825170.chain_3367	4
scaffold_8	ends_in_intron	11852953	11852953	+	asmbl_53286,asmbl_53289,asmbl_53291,asmbl_53292	none	blat.proc3825168.chain_3013,blat.proc3825168.chain_3014,blat.proc3825168.chain_3015,blat.proc3825168.chain_3021	4	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	7
scaffold_11	alt_donor	35528	35529	-	asmbl_6368	none	STRG.13237.2	1	blat.proc3825154.chain_1816	1
scaffold_5	spliced_intron	8554846	8554950	-	asmbl_44222	none	STRG.6194.1	1	STRG.6194.2,Trinity_GG_3480_c0_g1_i3,blat.proc3825150.chain_2387	3
scaffold_13	ends_in_intron	2341350	2341350	+	asmbl_10597	none	STRG.15564.10	1	STRG.15564.2,STRG.15564.4,STRG.15564.5	3
scaffold_3	retained_intron	17845439	17845779	+	asmbl_40706,asmbl_40708	none	STRG.4004.4,blat.proc3825166.chain_496	2	STRG.4004.1,blat.proc3825166.chain_497	2
scaffold_9	alt_donor	16575074	16575075	+	asmbl_54608	none	STRG.11800.3	1	STRG.11800.2,blat.proc3825170.chain_593	2
scaffold_6	ends_in_intron	9910461	9910461	+	asmbl_47250	none	STRG.7832.3,blat.proc3825168.chain_259	2	STRG.7832.1,STRG.7832.2	2
scaffold_1	alt_acceptor	1966737	1966738	-	asmbl_92	none	STRG.123.1,blat.proc3825148.chain_111	2	STRG.123.2	1
scaffold_12	retained_intron	3331444	3331469	+	asmbl_7546,asmbl_7547,asmbl_7548,asmbl_7550,asmbl_7551	none	STRG.14555.1,STRG.14555.2,STRG.14555.4,STRG.14555.5,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i2,Trinity_GG_25356_c0_g1_i3,Trinity_GG_25356_c0_g1_i4,blat.proc3825170.chain_3110,blat.proc3825170.chain_3111,blat.proc3825170.chain_3112	11	STRG.14555.3	1
scaffold_20	alt_acceptor	1875965	1875966	-	asmbl_25616	none	blat.proc3825176.chain_121	1	STRG.22923.1	1
scaffold_28	alt_donor	8908690	8908691	-	asmbl_38487	none	STRG.29951.1,blat.proc3825162.chain_3124	2	STRG.29951.2,Trinity_GG_16798_c0_g1_i1,blat.proc3825162.chain_3125	3
scaffold_21	retained_exon	10004994	10005017	-	asmbl_27999	none	STRG.24463.1,blat.proc3825160.chain_1637	2	STRG.24463.2,blat.proc3825160.chain_1638	2
scaffold_1	spliced_intron	13537791	13537907	-	asmbl_821,asmbl_822,asmbl_824,asmbl_825	none	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_931,blat.proc3825148.chain_932,blat.proc3825148.chain_933	7	Trinity_GG_496_c0_g2_i1,blat.proc3825148.chain_934	2
scaffold_22	retained_exon	4239310	4239788	-	asmbl_29213	none	STRG.24845.3	1	STRG.24845.2,Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065	3
scaffold_10	spliced_intron	7684017	7685179	+	asmbl_3297,asmbl_3298	none	STRG.12557.2,STRG.12557.5,blat.proc3825170.chain_1166,blat.proc3825170.chain_1167,blat.proc3825170.chain_1170	5	STRG.12557.4,blat.proc3825170.chain_1164,blat.proc3825170.chain_1168	3
scaffold_12	ends_in_intron	3692985	3692985	+	asmbl_7569	none	Trinity_GG_25367_c0_g1_i1,blat.proc3825170.chain_3148	2	STRG.14576.1,STRG.14576.2,Trinity_GG_25367_c0_g1_i2,blat.proc3825170.chain_3147	4
scaffold_14	alternate_exon	14148478	14148583	+	asmbl_12526	none	STRG.17687.4	1	STRG.17687.2,Trinity_GG_27000_c0_g1_i5,blat.proc3825172.chain_2357,blat.proc3825172.chain_2358,blat.proc3825172.chain_2359	5
scaffold_1	spliced_intron	8733924	8734054	-	asmbl_482,asmbl_484,asmbl_485	none	STRG.576.1,blat.proc3825148.chain_568,blat.proc3825148.chain_570,blat.proc3825148.chain_571	4	blat.proc3825148.chain_569	1
scaffold_28	retained_intron	414159	414254	+	asmbl_37279	none	STRG.29258.1,Trinity_GG_33553_c0_g1_i2,blat.proc3825178.chain_2495	3	blat.proc3825178.chain_2496	1
scaffold_7	starts_in_intron	12899963	12899963	-	asmbl_51272	none	blat.proc3825152.chain_1752	1	STRG.9403.1,blat.proc3825152.chain_1751	2
scaffold_10	retained_intron	207548	207639	-	asmbl_3923	none	blat.proc3825154.chain_431	1	STRG.11913.1,STRG.11913.2,blat.proc3825154.chain_430,blat.proc3825154.chain_432	4
scaffold_18	retained_intron	9787536	9787656	-	asmbl_20084	none	Trinity_GG_12062_c0_g1_i2,blat.proc3825158.chain_2495	2	STRG.21584.1,STRG.21584.2,blat.proc3825158.chain_2496	3
scaffold_9	retained_intron	11815672	11815756	+	asmbl_54383	none	Trinity_GG_23726_c0_g1_i5,blat.proc3825170.chain_317	2	STRG.11498.1,blat.proc3825170.chain_315	2
scaffold_19	alt_acceptor	7584264	7584265	+	asmbl_21471,asmbl_21472,asmbl_21473	none	STRG.22236.1,STRG.22236.2,Trinity_GG_29596_c1_g1_i2,blat.proc3825174.chain_3233,blat.proc3825174.chain_3235,blat.proc3825174.chain_3236,blat.proc3825174.chain_3239	7	blat.proc3825174.chain_3240	1
scaffold_16	spliced_intron	125457	125887	+	asmbl_15997,asmbl_16000	none	STRG.19007.2,STRG.19007.3,Trinity_GG_27742_c0_g1_i2,blat.proc3825172.chain_3685	4	Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3684	2
scaffold_27	retained_intron	5686546	5686785	+	asmbl_36356,asmbl_36357,asmbl_36358	none	STRG.28977.1,STRG.28977.4,STRG.28977.5,Trinity_GG_33317_c0_g1_i3,blat.proc3825178.chain_2111,blat.proc3825178.chain_2113	6	STRG.28977.3,blat.proc3825178.chain_2114,blat.proc3825178.chain_2115	3
scaffold_3	alternate_exon	7641649	7641783	-	asmbl_38973	none	STRG.3356.1,blat.proc3825148.chain_3232	2	STRG.3356.2	1
scaffold_17	skipped_exon	2355464	2357644	+	asmbl_18637	none	STRG.20030.1,blat.proc3825174.chain_907	2	STRG.20030.2,STRG.20030.4,STRG.20030.5,STRG.20030.6,STRG.20030.7	5
scaffold_26	alternate_exon	7487618	7487882	+	asmbl_35120	none	blat.proc3825178.chain_1471	1	STRG.28384.4,Trinity_GG_33001_c0_g2_i1,blat.proc3825178.chain_1473	3
scaffold_1	alt_acceptor	12170008	12170009	+	asmbl_2184	none	blat.proc3825164.chain_1006	1	STRG.838.2,blat.proc3825164.chain_1008	2
scaffold_14	alt_acceptor	6277228	6277229	-	asmbl_13112,asmbl_13113,asmbl_13118	none	STRG.17077.1,STRG.17077.2,blat.proc3825156.chain_1798,blat.proc3825156.chain_1799,blat.proc3825156.chain_1800	5	STRG.17077.3,STRG.17077.4,blat.proc3825156.chain_1801	3
scaffold_10	starts_in_intron	12949276	12949276	+	asmbl_3563	none	Trinity_GG_24422_c0_g1_i2,blat.proc3825170.chain_1514	2	STRG.12889.1,Trinity_GG_24422_c0_g1_i1,blat.proc3825170.chain_1513	3
scaffold_1	spliced_intron	1608805	1609003	+	asmbl_1499	none	Trinity_GG_17360_c0_g1_i2,blat.proc3825164.chain_167	2	Trinity_GG_17360_c0_g1_i3,Trinity_GG_17360_c0_g1_i4,Trinity_GG_17360_c0_g1_i5,blat.proc3825164.chain_163,blat.proc3825164.chain_164,blat.proc3825164.chain_165	6
scaffold_5	retained_intron	18758460	18758711	-	asmbl_44873	none	Trinity_GG_3898_c0_g1_i3,blat.proc3825150.chain_3108	2	STRG.7008.2,blat.proc3825150.chain_3107	2
scaffold_27	starts_in_intron	9917545	9917545	+	asmbl_36541	none	Trinity_GG_33521_c1_g1_i5,blat.proc3825178.chain_2445	2	Trinity_GG_33521_c1_g1_i6,blat.proc3825178.chain_2444,blat.proc3825178.chain_2446	3
scaffold_3	alt_donor	11977981	11977982	+	asmbl_40383,asmbl_40384	none	STRG.3620.1,STRG.3620.2,Trinity_GG_19308_c0_g1_i1,Trinity_GG_19308_c0_g1_i2,blat.proc3825166.chain_49,blat.proc3825166.chain_50	6	STRG.3620.3	1
scaffold_1	ends_in_intron	5222053	5222053	-	asmbl_251	none	blat.proc3825148.chain_241	1	STRG.330.1,blat.proc3825148.chain_239	2
scaffold_3	retained_intron	6658411	6658488	+	asmbl_40103,asmbl_40105,asmbl_40106,asmbl_40107,asmbl_40113	none	STRG.3295.1,blat.proc3825164.chain_3558,blat.proc3825164.chain_3564,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	6	STRG.3295.2,STRG.3295.3,STRG.3295.4,blat.proc3825164.chain_3559,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567	10
scaffold_17	alt_donor	11590052	11590053	-	asmbl_18286	none	STRG.20705.1,blat.proc3825158.chain_1738	2	blat.proc3825158.chain_1739	1
scaffold_1	starts_in_intron	6958129	6958129	-	asmbl_408	none	blat.proc3825148.chain_435	1	STRG.495.1,blat.proc3825148.chain_434,blat.proc3825148.chain_490	3
scaffold_9	starts_in_intron	5793014	5793014	-	asmbl_55037	none	blat.proc3825152.chain_3405	1	STRG.11150.1,blat.proc3825152.chain_3404	2
scaffold_17	starts_in_intron	10835281	10835281	-	asmbl_18252	none	blat.proc3825158.chain_1687	1	blat.proc3825158.chain_1685,blat.proc3825158.chain_1686	2
scaffold_11	skipped_exon	3024461	3026445	+	asmbl_5395	none	STRG.13434.1,blat.proc3825170.chain_1879	2	STRG.13434.2,blat.proc3825170.chain_1880	2
scaffold_11	starts_in_intron	17335499	17335499	+	asmbl_6213	none	STRG.14393.2	1	STRG.14393.1,Trinity_GG_25249_c0_g1_i2,blat.proc3825170.chain_2937,blat.proc3825170.chain_2938,blat.proc3825170.chain_2939	5
scaffold_9	spliced_intron	571217	571264	+	asmbl_53771	none	STRG.10788.1	1	STRG.10788.4	1
scaffold_10	alt_acceptor	782609	782610	+	asmbl_2873	none	blat.proc3825170.chain_655	1	blat.proc3825170.chain_654,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	4
scaffold_16	spliced_intron	205536	205755	+	asmbl_16005	none	Trinity_GG_27729_c0_g1_i2,blat.proc3825172.chain_3659	2	STRG.19008.1,Trinity_GG_27729_c0_g1_i1,Trinity_GG_27729_c0_g1_i3,blat.proc3825172.chain_3660,blat.proc3825172.chain_3661	5
scaffold_18	alt_acceptor	7035733	7035734	-	asmbl_19922	none	STRG.21414.2	1	STRG.21414.1,blat.proc3825158.chain_2337	2
scaffold_4	spliced_intron	5444968	5445072	-	asmbl_42605	none	STRG.4442.2,blat.proc3825150.chain_698	2	STRG.4442.1,blat.proc3825150.chain_697	2
scaffold_4	alt_donor	5279476	5279477	-	asmbl_42588	none	STRG.4425.2,blat.proc3825150.chain_680	2	STRG.4425.1,STRG.4425.3,blat.proc3825150.chain_681	3
scaffold_13	alt_donor	7198064	7198065	-	asmbl_9864	none	STRG.16016.3,blat.proc3825156.chain_960	2	STRG.16016.1,blat.proc3825156.chain_961	2
scaffold_20	ends_in_intron	11567019	11567019	+	asmbl_27076	none	blat.proc3825176.chain_871	1	STRG.23663.1,STRG.23663.2,blat.proc3825176.chain_868,blat.proc3825176.chain_869	4
scaffold_15	spliced_intron	4753368	4753541	+	asmbl_15168	none	STRG.18193.1,blat.proc3825172.chain_2872	2	STRG.18193.2,Trinity_GG_27290_c0_g1_i1,blat.proc3825172.chain_2870,blat.proc3825172.chain_2871	4
scaffold_27	starts_in_intron	2685714	2685714	+	asmbl_36102	none	Trinity_GG_33201_c0_g1_i1,Trinity_GG_33201_c0_g1_i2,blat.proc3825178.chain_1848,blat.proc3825178.chain_1849	4	STRG.28744.1,blat.proc3825178.chain_1847	2
scaffold_7	spliced_intron	12387302	12387428	-	asmbl_51204,asmbl_51205,asmbl_51206,asmbl_51208,asmbl_51209,asmbl_51210	none	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1655,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1660,blat.proc3825152.chain_1661	7	blat.proc3825152.chain_1657	1
scaffold_1	spliced_intron	14200941	14201384	+	asmbl_2341,asmbl_2343,asmbl_2345	none	Trinity_GG_17929_c0_g1_i4,Trinity_GG_17929_c0_g1_i5,blat.proc3825164.chain_1189,blat.proc3825164.chain_1191,blat.proc3825164.chain_1195	5	STRG.1008.2,Trinity_GG_17929_c0_g1_i7,blat.proc3825164.chain_1186,blat.proc3825164.chain_1190	4
scaffold_8	alt_donor	18108298	18108299	+	asmbl_53533	none	STRG.10716.3,Trinity_GG_23260_c0_g1_i2,blat.proc3825168.chain_3250	3	STRG.10716.1,Trinity_GG_23260_c0_g1_i1,blat.proc3825168.chain_3251	3
scaffold_19	alternate_exon	1656643	1659578	-	asmbl_22038,asmbl_22040	none	STRG.21926.1,blat.proc3825158.chain_2768,blat.proc3825158.chain_2769	3	STRG.21926.2	1
scaffold_2	starts_in_intron	18720475	18720475	+	asmbl_25239	none	blat.proc3825164.chain_3011	1	STRG.2752.1	1
scaffold_14	starts_in_intron	5534018	5534018	+	asmbl_12018	none	Trinity_GG_26668_c0_g1_i2,blat.proc3825172.chain_1774	2	STRG.17029.1,Trinity_GG_26668_c0_g1_i1,blat.proc3825172.chain_1773	3
scaffold_10	ends_in_intron	772769	772769	+	asmbl_2868,asmbl_2871,asmbl_2872	none	STRG.11971.1,STRG.11971.6,Trinity_GG_23932_c1_g1_i1,blat.proc3825170.chain_656	4	blat.proc3825170.chain_654,blat.proc3825170.chain_655,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	5
scaffold_1	skipped_exon	44087	45989	-	asmbl_2,asmbl_8	none	STRG.11.1,blat.proc3825148.chain_63,blat.proc3825148.chain_64	3	STRG.11.3	1
scaffold_13	starts_in_intron	7956411	7956411	+	asmbl_11085	none	STRG.16076.2,Trinity_GG_26148_c1_g1_i1,blat.proc3825172.chain_845	3	STRG.16076.1,blat.proc3825172.chain_843,blat.proc3825172.chain_844	3
scaffold_13	retained_intron	5949932	5950148	-	asmbl_9757,asmbl_9761	none	STRG.15911.5,blat.proc3825156.chain_756	2	STRG.15911.1,STRG.15911.2,STRG.15911.3,STRG.15911.4,blat.proc3825156.chain_755	5
scaffold_9	starts_in_intron	12270090	12270090	+	asmbl_54425	none	blat.proc3825170.chain_373	1	STRG.11550.1,blat.proc3825170.chain_371,blat.proc3825170.chain_374	3
scaffold_25	retained_intron	6066560	6066726	-	asmbl_34321,asmbl_34322	none	STRG.27490.3,blat.proc3825162.chain_848	2	STRG.27490.1,STRG.27490.2,blat.proc3825162.chain_845,blat.proc3825162.chain_846,blat.proc3825162.chain_847,blat.proc3825162.chain_849,blat.proc3825162.chain_850	7
scaffold_15	retained_exon	12421558	12421729	+	asmbl_15562	none	blat.proc3825172.chain_3324	1	STRG.18696.2	1
scaffold_24	starts_in_intron	5941942	5941942	+	asmbl_32270	none	STRG.26675.3	1	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3665,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	16
scaffold_20	spliced_intron	11950865	11950950	-	asmbl_26207,asmbl_26208	none	blat.proc3825160.chain_679,blat.proc3825160.chain_681	2	blat.proc3825160.chain_682	1
scaffold_17	spliced_intron	9453670	9453880	+	asmbl_19084,asmbl_19085	none	STRG.20569.3,STRG.20569.4,Trinity_GG_28584_c0_g1_i1,blat.proc3825174.chain_1441	4	STRG.20569.2,Trinity_GG_28584_c0_g1_i5,Trinity_GG_28584_c0_g1_i7,blat.proc3825174.chain_1437,blat.proc3825174.chain_1440	5
scaffold_14	alt_acceptor	8294655	8294656	-	asmbl_13283	none	blat.proc3825156.chain_2067	1	STRG.17254.1,blat.proc3825156.chain_2068,blat.proc3825156.chain_2069	3
scaffold_2	starts_in_intron	8306059	8306059	+	asmbl_24632	none	Trinity_GG_18514_c0_g1_i2,blat.proc3825164.chain_2315	2	STRG.2113.1,STRG.2113.2	2
scaffold_6	alternate_exon	5777860	5777952	-	asmbl_48432	none	STRG.7535.2,blat.proc3825150.chain_3718	2	STRG.7535.1,blat.proc3825150.chain_3719	2
scaffold_27	starts_in_intron	2769589	2769589	-	asmbl_36854	none	blat.proc3825162.chain_2004	1	STRG.28758.1,blat.proc3825162.chain_2006,blat.proc3825162.chain_2007	3
scaffold_9	spliced_intron	17548809	17549033	-	asmbl_55656	none	STRG.11842.2	1	STRG.11842.1,Trinity_GG_6526_c0_g1_i1,blat.proc3825154.chain_286	3
scaffold_14	alt_acceptor	2501702	2501703	-	asmbl_12963	none	STRG.16861.1,blat.proc3825156.chain_1680	2	STRG.16861.2	1
scaffold_22	alt_donor	10044840	10044841	-	asmbl_29579	none	STRG.25357.1	1	STRG.25357.2,STRG.25357.4	2
scaffold_14	alternate_exon	15945958	15946040	+	asmbl_12655,asmbl_12656	none	STRG.17840.1,STRG.17840.2	2	STRG.17840.3,blat.proc3825172.chain_2565,blat.proc3825172.chain_2566	3
scaffold_7	alt_donor	16117923	16117924	-	asmbl_51398	none	STRG.9573.1	1	STRG.9573.2,blat.proc3825152.chain_1931	2
scaffold_5	alt_acceptor	10983782	10983783	+	asmbl_45719	none	STRG.6378.1	1	STRG.6378.2	1
scaffold_6	starts_in_intron	1750578	1750578	-	asmbl_48114,asmbl_48116	none	STRG.7232.2,blat.proc3825150.chain_3310,blat.proc3825150.chain_3313	3	STRG.7232.1,STRG.7232.3,STRG.7232.4,STRG.7232.5,blat.proc3825150.chain_3309,blat.proc3825150.chain_3311,blat.proc3825150.chain_3312,blat.proc3825150.chain_3315	8
scaffold_13	retained_intron	4239686	4240251	-	asmbl_9610,asmbl_9611,asmbl_9614	none	STRG.15752.1,STRG.15752.3,STRG.15752.4,blat.proc3825156.chain_589,blat.proc3825156.chain_590	5	STRG.15752.2,blat.proc3825156.chain_592	2
scaffold_7	retained_intron	4545173	4545914	+	asmbl_49747	none	blat.proc3825168.chain_1300	1	STRG.8829.1,blat.proc3825168.chain_1298,blat.proc3825168.chain_1299,blat.proc3825168.chain_1301	4
scaffold_18	starts_in_intron	1499681	1499681	+	asmbl_20355	none	Trinity_GG_28824_c0_g1_i2,blat.proc3825174.chain_1849	2	STRG.21034.1,Trinity_GG_28824_c0_g1_i1,blat.proc3825174.chain_1850,blat.proc3825174.chain_1851	4
scaffold_2	alternate_exon	6512406	6512496	-	asmbl_23205	none	STRG.2013.4,Trinity_GG_1121_c0_g1_i2,blat.proc3825148.chain_2018	3	STRG.2013.1,STRG.2013.2,blat.proc3825148.chain_2016,blat.proc3825148.chain_2017	4
scaffold_16	alt_acceptor	790985	790986	+	asmbl_16050,asmbl_16052	none	STRG.19056.2,blat.proc3825172.chain_3648	2	STRG.19056.1,blat.proc3825172.chain_3646,blat.proc3825172.chain_3647	3
scaffold_6	spliced_intron	16613086	16613686	+	asmbl_47712,asmbl_47714	none	STRG.8389.1,blat.proc3825168.chain_796,blat.proc3825168.chain_797,blat.proc3825168.chain_798	4	STRG.8389.2,blat.proc3825168.chain_799	2
scaffold_11	ends_in_intron	222862	222862	+	asmbl_5279	none	STRG.13261.1	1	blat.proc3825170.chain_1815	1
scaffold_9	alt_acceptor	8182545	8182546	+	asmbl_54157,asmbl_54158	none	STRG.11248.1,STRG.11248.3,blat.proc3825170.chain_19	3	STRG.11248.2,Trinity_GG_23577_c0_g1_i1,blat.proc3825170.chain_17,blat.proc3825170.chain_18	4
scaffold_19	starts_in_intron	7740171	7740171	-	asmbl_22261	none	blat.proc3825158.chain_3069	1	STRG.22254.1,blat.proc3825158.chain_3068	2
scaffold_17	alt_donor	11567777	11567778	+	asmbl_19238	none	STRG.20703.4,Trinity_GG_28635_c0_g1_i1,blat.proc3825174.chain_1548	3	STRG.20703.1,STRG.20703.2,STRG.20703.3	3
scaffold_18	alt_acceptor	13111887	13111888	+	asmbl_20994	none	STRG.21750.3	1	STRG.21750.1,STRG.21750.2,blat.proc3825174.chain_2742,blat.proc3825174.chain_2743	4
scaffold_10	starts_in_intron	1021103	1021103	-	asmbl_4039	none	Trinity_GG_6660_c0_g1_i3,blat.proc3825154.chain_522	2	STRG.11988.1,Trinity_GG_6660_c0_g1_i1,blat.proc3825154.chain_521	3
scaffold_2	starts_in_intron	18520640	18520640	-	asmbl_23786	none	blat.proc3825148.chain_2609	1	STRG.2721.1	1
scaffold_15	retained_intron	11304106	11304275	+	asmbl_15493	none	Trinity_GG_27459_c0_g1_i3,blat.proc3825172.chain_3167	2	STRG.18603.1,blat.proc3825172.chain_3162,blat.proc3825172.chain_3163,blat.proc3825172.chain_3165,blat.proc3825172.chain_3166	5
scaffold_5	alt_acceptor	9082267	9082268	+	asmbl_45599,asmbl_45602,asmbl_45603,asmbl_45605	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2479	5	blat.proc3825166.chain_2481	1
scaffold_4	alt_acceptor	18292737	18292738	+	asmbl_42092,asmbl_42093,asmbl_42094	none	STRG.5428.1,STRG.5428.2,STRG.5428.4,blat.proc3825166.chain_1743,blat.proc3825166.chain_1744,blat.proc3825166.chain_1745	6	STRG.5428.5	1
scaffold_2	starts_in_intron	14343078	14343078	-	asmbl_23596	none	blat.proc3825148.chain_2417	1	STRG.2436.1,blat.proc3825148.chain_2419	2
scaffold_3	retained_intron	19884864	19885401	-	asmbl_39670,asmbl_39673	none	Trinity_GG_2243_c1_g1_i6,blat.proc3825150.chain_247,blat.proc3825150.chain_249	3	STRG.4100.3,STRG.4100.4,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_245	4
scaffold_7	retained_intron	12387637	12387722	-	asmbl_51207,asmbl_51209	none	blat.proc3825152.chain_1657,blat.proc3825152.chain_1660	2	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1655,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1661	6
scaffold_25	starts_in_intron	2676720	2676720	+	asmbl_33400	none	STRG.27236.2	1	STRG.27236.1,blat.proc3825178.chain_312,blat.proc3825178.chain_314	3
scaffold_13	alternate_exon	8896223	8896669	-	asmbl_9997	none	STRG.16155.2	1	STRG.16155.1,blat.proc3825156.chain_1024	2
scaffold_21	starts_in_intron	2515885	2515885	+	asmbl_28401	none	blat.proc3825176.chain_1028	1	STRG.23880.1	1
scaffold_10	alt_acceptor	10780273	10780274	+	asmbl_3434,asmbl_3435	none	STRG.12765.1,STRG.12765.3	2	STRG.12765.2	1
scaffold_7	alt_donor	8070046	8070047	+	asmbl_49952	none	STRG.9047.2,blat.proc3825168.chain_1526	2	STRG.9047.1,blat.proc3825168.chain_1525	2
scaffold_14	spliced_intron	12351303	12351424	+	asmbl_12424	none	STRG.17576.3,blat.proc3825172.chain_2274	2	blat.proc3825172.chain_2272	1
scaffold_9	alt_acceptor	15589168	15589169	+	asmbl_54582	none	STRG.11750.2	1	STRG.11750.1,blat.proc3825170.chain_531,blat.proc3825170.chain_532	3
scaffold_5	alternate_exon	7319431	7319455	+	asmbl_45487,asmbl_45488	none	Trinity_GG_20663_c0_g1_i1,Trinity_GG_20663_c0_g1_i2,blat.proc3825166.chain_2348,blat.proc3825166.chain_2349	4	STRG.6129.1,STRG.6129.2,Trinity_GG_20663_c0_g2_i1,blat.proc3825166.chain_2350	4
scaffold_6	alt_donor	9987182	9987183	-	asmbl_48645,asmbl_48647	none	STRG.7839.2,blat.proc3825152.chain_199	2	STRG.7839.1,blat.proc3825152.chain_198,blat.proc3825152.chain_201	3
scaffold_28	alternate_exon	5230414	5230820	-	asmbl_38263	none	blat.proc3825162.chain_2848	1	Trinity_GG_16632_c0_g1_i2,blat.proc3825162.chain_2845	2
scaffold_6	retained_intron	8172023	8172117	-	asmbl_48535,asmbl_48537,asmbl_48543,asmbl_48545	none	Trinity_GG_4351_c0_g1_i4,blat.proc3825152.chain_86,blat.proc3825152.chain_88,blat.proc3825152.chain_92	4	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_87,blat.proc3825152.chain_90,blat.proc3825152.chain_91,blat.proc3825152.chain_93	6
scaffold_5	alt_donor	4698126	4698127	+	asmbl_45284	none	STRG.5925.5,blat.proc3825166.chain_2151	2	STRG.5925.4	1
scaffold_14	alternate_exon	15359136	15362215	-	asmbl_13718	none	STRG.17774.1,blat.proc3825156.chain_2628	2	STRG.17774.2	1
scaffold_17	alt_acceptor	2561585	2561586	-	asmbl_17767	none	STRG.20056.2	1	STRG.20056.1	1
scaffold_4	starts_in_intron	4414581	4414581	+	asmbl_41256,asmbl_41257,asmbl_41261	none	blat.proc3825166.chain_847,blat.proc3825166.chain_854,blat.proc3825166.chain_855	3	STRG.4349.1,STRG.4349.3,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_843,blat.proc3825166.chain_851,blat.proc3825166.chain_853	7
scaffold_26	ends_in_intron	7488054	7488054	+	asmbl_35116,asmbl_35118,asmbl_35119	none	STRG.28384.1,STRG.28384.3,blat.proc3825178.chain_1469,blat.proc3825178.chain_1470	4	STRG.28384.2,blat.proc3825178.chain_1471,blat.proc3825178.chain_1472	3
scaffold_5	retained_intron	11630266	11630481	-	asmbl_44415,asmbl_44419	none	blat.proc3825150.chain_2638,blat.proc3825150.chain_2639	2	blat.proc3825150.chain_2642	1
scaffold_24	retained_intron	1078656	1078823	+	asmbl_32068	none	STRG.26383.2,blat.proc3825176.chain_3363	2	STRG.26383.1,blat.proc3825176.chain_3364	2
scaffold_6	alt_donor	4383275	4383276	-	asmbl_48314	none	STRG.7413.2	1	STRG.7413.1,blat.proc3825150.chain_3513	2
scaffold_16	alt_donor	10155724	10155725	-	asmbl_17308	none	STRG.19603.2	1	STRG.19603.1,STRG.19603.3,blat.proc3825158.chain_710	3
scaffold_19	skipped_exon	13267387	13268218	-	asmbl_22637	none	STRG.22648.2,blat.proc3825158.chain_3489	2	STRG.22648.1,blat.proc3825158.chain_3490	2
scaffold_7	retained_intron	12455195	12455507	-	asmbl_51231	none	Trinity_GG_5252_c0_g1_i20	1	STRG.9354.1,STRG.9354.2,STRG.9354.3,STRG.9354.4	4
scaffold_27	retained_exon	616619	616723	+	asmbl_35959	none	STRG.28581.2,blat.proc3825178.chain_1678	2	STRG.28581.1	1
scaffold_23	starts_in_intron	3233487	3233487	-	asmbl_30786,asmbl_30789	none	STRG.25755.2,blat.proc3825160.chain_2916	2	STRG.25755.1,STRG.25755.3,blat.proc3825160.chain_2917	3
scaffold_1	alternate_exon	12746050	12748713	-	asmbl_753	none	STRG.895.5	1	STRG.895.3,STRG.895.4,blat.proc3825148.chain_851	3
scaffold_7	ends_in_intron	12642267	12642267	+	asmbl_50285	none	blat.proc3825168.chain_1851	1	STRG.9376.1,blat.proc3825168.chain_1852	2
scaffold_52	alt_acceptor	2534	2535	-	asmbl_46521,asmbl_46523	none	STRG.30060.1,Trinity_GG_16867_c0_g1_i1,blat.proc3825162.chain_3233,blat.proc3825162.chain_3235	4	STRG.30060.2,STRG.30060.3,blat.proc3825162.chain_3236	3
scaffold_2	spliced_intron	14560511	14560687	+	asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961	none	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11	Trinity_GG_18675_c0_g1_i21,blat.proc3825164.chain_2655	2
scaffold_28	retained_intron	2808976	2809341	-	asmbl_38089,asmbl_38092,asmbl_38093	none	STRG.29471.3,blat.proc3825162.chain_2599,blat.proc3825162.chain_2600	3	STRG.29471.1,STRG.29471.2,STRG.29471.4,blat.proc3825162.chain_2598,blat.proc3825162.chain_2601	5
scaffold_3	alt_donor	1551266	1551267	-	asmbl_38719,asmbl_38721	none	STRG.2986.1,STRG.2986.2,blat.proc3825148.chain_2849	3	STRG.2986.3,blat.proc3825148.chain_2852	2
scaffold_8	alt_acceptor	11110924	11110925	+	asmbl_53195	none	STRG.10324.2,blat.proc3825168.chain_2893	2	STRG.10324.1,blat.proc3825168.chain_2894	2
scaffold_23	ends_in_intron	1144678	1144678	-	asmbl_30628	none	Trinity_GG_14305_c0_g1_i8,blat.proc3825160.chain_2735	2	STRG.25596.1,blat.proc3825160.chain_2731,blat.proc3825160.chain_2733,blat.proc3825160.chain_2734,blat.proc3825160.chain_2736	5
scaffold_22	alt_acceptor	10237272	10237273	-	asmbl_29588	none	STRG.25369.2	1	STRG.25369.1,STRG.25369.3,blat.proc3825160.chain_2495,blat.proc3825160.chain_2496	4
scaffold_25	alt_acceptor	1296813	1296814	+	asmbl_33372	none	STRG.27172.1	1	blat.proc3825162.chain_540	1
scaffold_27	alt_donor	628880	628881	-	asmbl_36702,asmbl_36703,asmbl_36705,asmbl_36707	none	STRG.28583.1,STRG.28583.3,STRG.28583.4,Trinity_GG_15996_c0_g1_i1,blat.proc3825162.chain_1825,blat.proc3825162.chain_1827,blat.proc3825162.chain_1828	7	STRG.28583.2,blat.proc3825162.chain_1824	2
scaffold_18	skipped_exon	6901687	6902245	+	asmbl_20689	none	Trinity_GG_29115_c0_g1_i2,blat.proc3825174.chain_2400	2	STRG.21393.1,blat.proc3825174.chain_2399	2
scaffold_6	retained_exon	2744895	2744981	-	asmbl_48157	none	STRG.7271.1,Trinity_GG_4023_c0_g1_i1	2	blat.proc3825150.chain_3317	1
scaffold_9	retained_intron	11835838	11835897	+	asmbl_54385	none	STRG.11500.1,Trinity_GG_23734_c0_g1_i1,blat.proc3825170.chain_327	3	STRG.11500.2	1
scaffold_4	skipped_exon	16434070	16435033	-	asmbl_43171,asmbl_43172	none	STRG.5219.2,STRG.5219.3	2	STRG.5219.1	1
scaffold_6	retained_intron	298817	299335	+	asmbl_46647	none	STRG.7091.1,Trinity_GG_21228_c0_g1_i2,blat.proc3825166.chain_3319	3	STRG.7091.4,Trinity_GG_21228_c0_g1_i1,blat.proc3825166.chain_3316	3
scaffold_25	spliced_intron	3755005	3755481	+	asmbl_33462	none	STRG.27328.1,blat.proc3825178.chain_421,blat.proc3825178.chain_422	3	STRG.27328.2,blat.proc3825178.chain_420	2
scaffold_28	retained_intron	1104760	1104779	-	asmbl_37966	none	Trinity_GG_16420_c0_g1_i1	1	STRG.29317.1,blat.proc3825162.chain_2486	2
scaffold_23	spliced_intron	7388982	7389133	+	asmbl_31691	none	STRG.26057.2	1	STRG.26057.1,blat.proc3825176.chain_2885	2
scaffold_20	alt_donor	4262353	4262354	-	asmbl_25731	none	STRG.23110.3	1	STRG.23110.2	1
scaffold_16	starts_in_intron	4657743	4657743	+	asmbl_16196	none	Trinity_GG_27846_c0_g2_i1,blat.proc3825174.chain_139	2	STRG.19251.1,STRG.19251.2,blat.proc3825174.chain_136,blat.proc3825174.chain_138	4
scaffold_23	alt_donor	7678008	7678009	-	asmbl_31044	none	STRG.26079.1	1	STRG.26079.2	1
scaffold_27	starts_in_intron	1959438	1959438	+	asmbl_36057	none	Trinity_GG_33165_c4_g1_i1	1	blat.proc3825178.chain_1779	1
scaffold_7	alt_donor	16823392	16823393	-	asmbl_51413,asmbl_51417	none	STRG.9596.1,STRG.9596.2,blat.proc3825152.chain_1903	3	blat.proc3825152.chain_1902,blat.proc3825152.chain_1904	2
scaffold_20	spliced_intron	12074998	12075218	-	asmbl_26214,asmbl_26216,asmbl_26218	none	STRG.23706.1,blat.proc3825160.chain_685,blat.proc3825160.chain_687,blat.proc3825160.chain_688	4	blat.proc3825160.chain_686	1
scaffold_20	starts_in_intron	7858452	7858452	-	asmbl_25935	none	STRG.23336.4	1	STRG.23336.1,STRG.23336.2,STRG.23336.3,blat.proc3825160.chain_415,blat.proc3825160.chain_416,blat.proc3825160.chain_417	6
scaffold_18	retained_intron	3096365	3096617	-	asmbl_19744	none	STRG.21149.2,blat.proc3825158.chain_2057	2	STRG.21149.1	1
scaffold_11	starts_in_intron	4716439	4716439	+	asmbl_5500	none	Trinity_GG_24742_c0_g1_i1,blat.proc3825170.chain_2058	2	STRG.13556.1,STRG.13556.2,STRG.13556.3,blat.proc3825170.chain_2057	4
scaffold_18	alt_acceptor	7553555	7553556	-	asmbl_19955	none	STRG.21458.1,blat.proc3825158.chain_2374	2	STRG.21458.2,STRG.21458.3	2
scaffold_3	ends_in_intron	6048556	6048556	-	asmbl_38889	none	Trinity_GG_1752_c0_g1_i1,blat.proc3825148.chain_3087	2	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3088	6
scaffold_28	starts_in_intron	666507	666507	-	asmbl_37925	none	blat.proc3825162.chain_2432	1	STRG.29284.1,blat.proc3825162.chain_2433	2
scaffold_24	alternate_exon	3435579	3436774	-	asmbl_32831,asmbl_32832	none	STRG.26548.3,blat.proc3825160.chain_3622	2	STRG.26548.4	1
scaffold_6	starts_in_intron	5055216	5055216	-	asmbl_48390	none	blat.proc3825150.chain_3641	1	STRG.7486.1,STRG.7486.2,STRG.7486.3,STRG.7486.5,blat.proc3825150.chain_3643,blat.proc3825150.chain_3645	6
scaffold_6	retained_intron	5197857	5197979	+	asmbl_46919,asmbl_46923,asmbl_46925,asmbl_46926	none	STRG.7496.6,Trinity_GG_21344_c0_g1_i16,blat.proc3825166.chain_3547,blat.proc3825166.chain_3554,blat.proc3825166.chain_3556	5	STRG.7496.1,STRG.7496.2,STRG.7496.5,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i3,Trinity_GG_21344_c0_g1_i6,blat.proc3825166.chain_3548,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3555	11
scaffold_20	retained_exon	10314450	10314503	+	asmbl_26945,asmbl_26947	none	STRG.23577.1,Trinity_GG_30312_c1_g1_i1,blat.proc3825176.chain_692	3	blat.proc3825176.chain_690,blat.proc3825176.chain_691	2
scaffold_2	retained_intron	14562874	14562960	+	asmbl_24948	none	STRG.2464.3,Trinity_GG_18675_c0_g1_i6,blat.proc3825164.chain_2660	3	STRG.2464.1,STRG.2464.2,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2657,blat.proc3825164.chain_2662,blat.proc3825164.chain_2665	7
scaffold_11	retained_intron	5868618	5868758	-	asmbl_6686,asmbl_6688	none	STRG.13653.3,blat.proc3825154.chain_2234,blat.proc3825154.chain_2236	3	STRG.13653.2,blat.proc3825154.chain_2233	2
scaffold_4	alt_acceptor	5474408	5474409	+	asmbl_41354	none	STRG.4441.2	1	STRG.4441.1,blat.proc3825166.chain_898	2
scaffold_14	retained_exon	868708	868738	+	asmbl_11774	none	Trinity_GG_26529_c0_g1_i2,blat.proc3825172.chain_1524	2	STRG.16759.1,STRG.16759.2,STRG.16759.3,blat.proc3825172.chain_1525	4
scaffold_13	starts_in_intron	6110063	6110063	+	asmbl_10914	none	STRG.15920.2	1	STRG.15920.1,blat.proc3825172.chain_621	2
scaffold_27	starts_in_intron	570906	570906	+	asmbl_35952	none	STRG.28577.3,blat.proc3825178.chain_1667	2	STRG.28577.2,blat.proc3825178.chain_1668,blat.proc3825178.chain_1669	3
scaffold_16	retained_intron	787406	787665	+	asmbl_16049,asmbl_16051	none	blat.proc3825172.chain_3647,blat.proc3825172.chain_3649	2	STRG.19056.1,STRG.19056.2,blat.proc3825172.chain_3646,blat.proc3825172.chain_3648	4
scaffold_24	retained_exon	8954816	8954906	+	asmbl_32460	none	STRG.26917.1,Trinity_GG_32185_c0_g1_i1,blat.proc3825178.chain_102	3	STRG.26917.2	1
scaffold_12	retained_intron	14184773	14185070	-	asmbl_8997	none	blat.proc3825156.chain_62	1	STRG.15259.1,STRG.15259.2,STRG.15259.3,blat.proc3825156.chain_61	4
scaffold_24	alternate_exon	4317229	4318880	+	asmbl_32187	none	STRG.26600.2,Trinity_GG_31987_c2_g1_i1,blat.proc3825176.chain_3496,blat.proc3825176.chain_3497	4	Trinity_GG_31987_c0_g1_i1,Trinity_GG_31987_c0_g1_i2,blat.proc3825176.chain_3494,blat.proc3825176.chain_3495	4
scaffold_10	spliced_intron	5856417	5856955	-	asmbl_4398,asmbl_4400,asmbl_4401	none	STRG.12409.1,STRG.12409.2,STRG.12409.3,blat.proc3825154.chain_985	4	Trinity_GG_6938_c0_g1_i1,blat.proc3825154.chain_981	2
scaffold_156	alternate_exon	6719	6959	+	asmbl_15980	none	STRG.30199.1,blat.proc3825178.chain_3314	2	STRG.30199.2,blat.proc3825178.chain_3315	2
scaffold_20	alt_acceptor	476082	476083	+	asmbl_26361	none	STRG.22751.2	1	STRG.22751.1	1
scaffold_10	alternate_exon	3760446	3760510	-	asmbl_4222	none	STRG.12208.4	1	STRG.12208.2	1
scaffold_16	spliced_intron	434057	434518	-	asmbl_16873,asmbl_16875,asmbl_16876,asmbl_16879,asmbl_16880	none	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_198,blat.proc3825158.chain_201,blat.proc3825158.chain_203	5	STRG.19041.3,blat.proc3825158.chain_199,blat.proc3825158.chain_202,blat.proc3825158.chain_204	4
scaffold_13	spliced_intron	6761797	6761991	+	asmbl_10970,asmbl_10971	none	STRG.15967.1,blat.proc3825172.chain_649	2	STRG.15967.2,Trinity_GG_26054_c0_g1_i2,blat.proc3825172.chain_650,blat.proc3825172.chain_651	4
scaffold_2	spliced_intron	15451748	15451824	+	asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25041,asmbl_25042,asmbl_25043	none	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811	9	blat.proc3825164.chain_2812	1
scaffold_3	retained_exon	10275591	10275683	+	asmbl_40248,asmbl_40251	none	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3	STRG.3467.1,STRG.3467.3,blat.proc3825164.chain_3727,blat.proc3825164.chain_3728,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734,blat.proc3825164.chain_3736	7
scaffold_2	alt_donor	945832	945833	+	asmbl_24166	none	STRG.1574.4	1	STRG.1574.1,STRG.1574.2,STRG.1574.3	3
scaffold_14	starts_in_intron	8335050	8335050	+	asmbl_12226	none	blat.proc3825172.chain_2027	1	STRG.17258.1,STRG.17258.2,blat.proc3825172.chain_2025,blat.proc3825172.chain_2026	4
scaffold_2	alt_donor	20130169	20130170	-	asmbl_23884	none	STRG.2842.2	1	STRG.2842.1,blat.proc3825148.chain_2780	2
scaffold_21	retained_intron	6190737	6191794	+	asmbl_28620,asmbl_28622	none	STRG.24151.1,Trinity_GG_30691_c0_g1_i3,blat.proc3825176.chain_1349,blat.proc3825176.chain_1350	4	STRG.24151.2,blat.proc3825176.chain_1351	2
scaffold_15	alt_donor	9286723	9286724	+	asmbl_15382,asmbl_15383,asmbl_15385	none	STRG.18460.1,blat.proc3825172.chain_3076,blat.proc3825172.chain_3077	3	STRG.18460.2	1
scaffold_16	alt_donor	7115652	7115653	-	asmbl_17164	none	STRG.19389.3	1	STRG.19389.2	1
scaffold_28	ends_in_intron	55813	55813	-	asmbl_37883	none	Trinity_GG_16368_c1_g1_i1,blat.proc3825162.chain_2403	2	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2400,blat.proc3825162.chain_2402	4
scaffold_5	skipped_exon	134959	136525	+	asmbl_45071	none	STRG.5577.2	1	STRG.5577.1	1
scaffold_3	alternate_exon	14576165	14576256	-	asmbl_39399,asmbl_39401	none	STRG.3797.3,blat.proc3825148.chain_3742	2	STRG.3797.2,blat.proc3825148.chain_3740	2
scaffold_16	skipped_exon	10972053	10973639	-	asmbl_17320,asmbl_17322,asmbl_17324	none	STRG.19645.1,STRG.19645.2,blat.proc3825158.chain_660,blat.proc3825158.chain_661	4	blat.proc3825158.chain_663	1
scaffold_3	skipped_exon	14807270	14807933	-	asmbl_39429	none	STRG.3824.2,blat.proc3825150.chain_23	2	blat.proc3825150.chain_24	1
scaffold_17	spliced_intron	14633326	14633465	+	asmbl_19420	none	blat.proc3825174.chain_1755	1	STRG.20943.2	1
scaffold_6	retained_intron	1585415	1585461	+	asmbl_46722	none	Trinity_GG_21288_c1_g1_i1,blat.proc3825166.chain_3427,blat.proc3825166.chain_3428	3	STRG.7208.1	1
scaffold_18	spliced_intron	1862478	1862581	-	asmbl_19649,asmbl_19650,asmbl_19651	none	STRG.21074.1,STRG.21074.3,blat.proc3825158.chain_1998,blat.proc3825158.chain_1999	4	STRG.21074.2,Trinity_GG_11788_c0_g1_i3,blat.proc3825158.chain_2000	3
scaffold_18	retained_exon	3637424	3637456	+	asmbl_20465	none	STRG.21184.3,blat.proc3825174.chain_2121	2	STRG.21184.1,STRG.21184.2,STRG.21184.4,blat.proc3825174.chain_2122,blat.proc3825174.chain_2123	5
scaffold_12	ends_in_intron	15686023	15686023	-	asmbl_9097	none	Trinity_GG_8617_c0_g1_i2,blat.proc3825156.chain_215	2	STRG.15360.1,Trinity_GG_8617_c0_g1_i1,blat.proc3825156.chain_214	3
scaffold_15	spliced_intron	1501426	1501743	-	asmbl_13954	none	blat.proc3825156.chain_2803	1	blat.proc3825156.chain_2801	1
scaffold_8	alt_donor	18434352	18434353	+	asmbl_53556	none	STRG.10742.2	1	STRG.10742.1,blat.proc3825168.chain_3265	2
scaffold_19	retained_intron	11458491	11458642	-	asmbl_22386	none	Trinity_GG_12484_c0_g1_i4,blat.proc3825158.chain_3197	2	STRG.22479.1,blat.proc3825158.chain_3198,blat.proc3825158.chain_3199,blat.proc3825158.chain_3200,blat.proc3825158.chain_3201	5
scaffold_21	retained_intron	8278548	8278631	+	asmbl_28807	none	STRG.24368.4	1	STRG.24368.2	1
scaffold_10	starts_in_intron	3786011	3786011	+	asmbl_3072	none	Trinity_GG_24099_c2_g1_i1,blat.proc3825170.chain_944	2	STRG.12211.2	1
scaffold_2	retained_intron	888327	888347	+	asmbl_24127,asmbl_24128,asmbl_24129,asmbl_24130,asmbl_24131,asmbl_24132,asmbl_24133,asmbl_24134	none	STRG.1565.1,STRG.1565.2,STRG.1565.3,STRG.1565.5,Trinity_GG_18210_c0_g1_i1,blat.proc3825164.chain_1711	6	STRG.1565.4	1
scaffold_11	alternate_exon	17070301	17070425	-	asmbl_7242	none	STRG.14371.3,blat.proc3825154.chain_2805	2	STRG.14371.1,STRG.14371.2,blat.proc3825154.chain_2803,blat.proc3825154.chain_2806	4
scaffold_7	retained_intron	6580953	6581051	-	asmbl_50920	none	STRG.8930.1,blat.proc3825152.chain_1365	2	STRG.8930.2	1
scaffold_16	starts_in_intron	11695795	11695795	-	asmbl_17358	none	blat.proc3825158.chain_721	1	STRG.19693.1,blat.proc3825158.chain_720	2
scaffold_6	starts_in_intron	16862298	16862298	-	asmbl_49165	none	STRG.8402.1	1	STRG.8402.2	1
scaffold_14	starts_in_intron	10480683	10480683	+	asmbl_12323	none	Trinity_GG_26874_c0_g1_i3,blat.proc3825172.chain_2143	2	STRG.17398.1,STRG.17398.2,STRG.17398.3,blat.proc3825172.chain_2141,blat.proc3825172.chain_2142,blat.proc3825172.chain_2144	6
scaffold_10	retained_intron	1076179	1076832	-	asmbl_4044,asmbl_4045	none	STRG.11997.1,STRG.11997.2	2	STRG.11997.3,Trinity_GG_6671_c0_g1_i3,blat.proc3825154.chain_549	3
scaffold_9	retained_exon	644643	644687	+	asmbl_53782	none	STRG.10793.3	1	STRG.10793.4	1
scaffold_12	spliced_intron	4984361	4984577	+	asmbl_7624,asmbl_7628,asmbl_7632,asmbl_7633	none	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3141	5	blat.proc3825170.chain_3139	1
scaffold_12	alt_donor	9234410	9234411	-	asmbl_8667	none	STRG.14939.1	1	STRG.14939.3,STRG.14939.5,blat.proc3825154.chain_3447,blat.proc3825154.chain_3450,blat.proc3825154.chain_3451,blat.proc3825154.chain_3454,blat.proc3825154.chain_3455,blat.proc3825154.chain_3456	8
scaffold_15	retained_intron	4231931	4232179	+	asmbl_15133,asmbl_15134	none	blat.proc3825172.chain_2840,blat.proc3825172.chain_2842	2	STRG.18172.1,STRG.18172.2,blat.proc3825172.chain_2836,blat.proc3825172.chain_2837,blat.proc3825172.chain_2838,blat.proc3825172.chain_2841,blat.proc3825172.chain_2843	7
scaffold_2	retained_intron	888658	888818	+	asmbl_24132	none	STRG.1565.2,Trinity_GG_18210_c1_g1_i3,blat.proc3825164.chain_1713	3	STRG.1565.5,blat.proc3825164.chain_1715	2
scaffold_5	starts_in_intron	13878066	13878066	+	asmbl_45887,asmbl_45888	none	STRG.6616.2,blat.proc3825166.chain_2762,blat.proc3825166.chain_2764	3	STRG.6616.1,blat.proc3825166.chain_2763	2
scaffold_9	alternate_exon	17582033	17582103	-	asmbl_55657	none	STRG.11844.1	1	STRG.11844.2	1
scaffold_14	alternate_exon	12632417	12632590	-	asmbl_13579,asmbl_13580,asmbl_13583,asmbl_13587,asmbl_13588	none	STRG.17582.1,STRG.17582.3,STRG.17582.5,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2420,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	8	blat.proc3825156.chain_2419	1
scaffold_1	spliced_intron	6284662	6285080	-	asmbl_335,asmbl_337,asmbl_342,asmbl_344	none	STRG.423.1,STRG.423.5,Trinity_GG_229_c0_g1_i9,blat.proc3825148.chain_412,blat.proc3825148.chain_417,blat.proc3825148.chain_418	6	STRG.423.6,Trinity_GG_229_c0_g1_i11,blat.proc3825148.chain_408	3
scaffold_1	alt_donor	12956121	12956122	+	asmbl_2283,asmbl_2284	none	STRG.924.1,STRG.924.3,blat.proc3825164.chain_1090,blat.proc3825164.chain_1091	4	STRG.924.2	1
scaffold_5	ends_in_intron	4638446	4638446	-	asmbl_43969	none	blat.proc3825150.chain_2100	1	STRG.5916.1,blat.proc3825150.chain_2099	2
scaffold_15	spliced_intron	13944525	13944639	-	asmbl_14682,asmbl_14685	none	blat.proc3825156.chain_3670,blat.proc3825156.chain_3674	2	blat.proc3825156.chain_3671,blat.proc3825156.chain_3672	2
scaffold_12	ends_in_intron	9988984	9988984	-	asmbl_8711	none	Trinity_GG_8331_c0_g1_i2,blat.proc3825154.chain_3438	2	STRG.14972.3,blat.proc3825154.chain_3439,blat.proc3825154.chain_3440	3
scaffold_15	retained_intron	12748652	12748931	+	asmbl_15603	none	blat.proc3825172.chain_3380	1	STRG.18732.1,STRG.18732.2,blat.proc3825172.chain_3377,blat.proc3825172.chain_3378,blat.proc3825172.chain_3379	5
scaffold_2	spliced_intron	166805	166882	+	asmbl_24079,asmbl_24080,asmbl_24082	none	STRG.1522.1,STRG.1522.2,blat.proc3825164.chain_1668,blat.proc3825164.chain_1671	4	blat.proc3825164.chain_1669	1
scaffold_13	alt_acceptor	7085089	7085090	-	asmbl_9847	none	STRG.16012.1,blat.proc3825156.chain_983	2	STRG.16012.2	1
scaffold_20	retained_intron	10856589	10856956	+	asmbl_26997	none	Trinity_GG_30381_c0_g1_i1,blat.proc3825176.chain_804	2	STRG.23612.1,Trinity_GG_30381_c0_g1_i3,blat.proc3825176.chain_805,blat.proc3825176.chain_806	4
scaffold_14	starts_in_intron	11136390	11136390	-	asmbl_13448	none	STRG.17450.1,blat.proc3825156.chain_2249	2	STRG.17450.2,STRG.17450.3,blat.proc3825156.chain_2248,blat.proc3825156.chain_2250,blat.proc3825156.chain_2251	5
scaffold_15	alt_acceptor	375432	375433	+	asmbl_14964	none	STRG.17890.2	1	STRG.17890.1,blat.proc3825172.chain_2634	2
scaffold_9	alt_donor	16567511	16567512	+	asmbl_54599,asmbl_54600,asmbl_54603,asmbl_54605	none	STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_612,blat.proc3825170.chain_613,blat.proc3825170.chain_617	7	STRG.11807.1,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i19,Trinity_GG_23904_c0_g1_i21,blat.proc3825170.chain_610,blat.proc3825170.chain_614,blat.proc3825170.chain_616	7
scaffold_15	alt_donor	5345936	5345937	+	asmbl_15199	none	STRG.18229.2,blat.proc3825172.chain_2845	2	STRG.18229.1,blat.proc3825172.chain_2846	2
scaffold_8	alt_donor	18070990	18070991	+	asmbl_53522	none	STRG.10706.2	1	STRG.10706.1,blat.proc3825168.chain_3219	2
scaffold_1	starts_in_intron	1237609	1237609	+	asmbl_1466	none	Trinity_GG_17371_c0_g1_i1,blat.proc3825164.chain_184	2	STRG.66.1,blat.proc3825164.chain_183	2
scaffold_12	starts_in_intron	1971770	1971770	-	asmbl_8307	none	blat.proc3825154.chain_2925	1	STRG.14484.1,STRG.14484.2,blat.proc3825154.chain_2926	3
scaffold_11	alt_acceptor	6073281	6073282	+	asmbl_5609	none	STRG.13670.3	1	STRG.13670.1,STRG.13670.2,blat.proc3825170.chain_2150	3
scaffold_2	alt_acceptor	7119293	7119294	+	asmbl_24528	none	STRG.2045.3	1	STRG.2045.1,STRG.2045.2,Trinity_GG_18474_c0_g1_i1,Trinity_GG_18474_c0_g1_i2,blat.proc3825164.chain_2213,blat.proc3825164.chain_2214	6
scaffold_21	alt_acceptor	755709	755710	+	asmbl_28302	none	STRG.23772.1,Trinity_GG_30485_c0_g1_i2,blat.proc3825176.chain_986,blat.proc3825176.chain_987	4	STRG.23772.2	1
scaffold_14	spliced_intron	3588641	3588755	+	asmbl_11951	none	STRG.16942.3	1	STRG.16942.2,STRG.16942.4,blat.proc3825172.chain_1711	3
scaffold_28	retained_intron	7720311	7721514	+	asmbl_37704	none	STRG.29845.2,Trinity_GG_33846_c1_g1_i6,blat.proc3825178.chain_3017,blat.proc3825178.chain_3021	4	STRG.29845.1,blat.proc3825178.chain_3019,blat.proc3825178.chain_3022	3
scaffold_2	ends_in_intron	16861215	16861215	+	asmbl_25151	none	blat.proc3825164.chain_2900	1	STRG.2602.3,blat.proc3825164.chain_2903	2
scaffold_23	starts_in_intron	6334253	6334253	+	asmbl_31614	none	Trinity_GG_31638_c0_g1_i4,blat.proc3825176.chain_2913	2	STRG.25988.3,blat.proc3825176.chain_2909,blat.proc3825176.chain_2910,blat.proc3825176.chain_2912	4
scaffold_9	alt_acceptor	6847006	6847007	-	asmbl_55079	none	STRG.11196.2,blat.proc3825152.chain_3347	2	STRG.11196.1,STRG.11196.3,blat.proc3825152.chain_3346,blat.proc3825152.chain_3348	4
scaffold_11	retained_intron	6138503	6138584	-	asmbl_6701	none	blat.proc3825154.chain_2224	1	STRG.13679.1,STRG.13679.2,blat.proc3825154.chain_2225,blat.proc3825154.chain_2226,blat.proc3825154.chain_2227	5
scaffold_16	ends_in_intron	1248205	1248205	-	asmbl_16935	none	STRG.19087.4,blat.proc3825158.chain_226	2	STRG.19087.1,STRG.19087.2,STRG.19087.3,blat.proc3825158.chain_222,blat.proc3825158.chain_224,blat.proc3825158.chain_225	6
scaffold_13	starts_in_intron	7423340	7423340	+	asmbl_11048	none	STRG.16035.2	1	STRG.16035.1,Trinity_GG_26129_c0_g1_i1,blat.proc3825172.chain_818	3
scaffold_16	retained_intron	12019045	12019148	+	asmbl_16628	none	Trinity_GG_28082_c0_g1_i1,blat.proc3825174.chain_575	2	STRG.19728.1,STRG.19728.3,blat.proc3825174.chain_577	3
scaffold_15	ends_in_intron	9815990	9815990	+	asmbl_15416	none	blat.proc3825172.chain_3085	1	STRG.18497.1,STRG.18497.2,STRG.18497.3,blat.proc3825172.chain_3081,blat.proc3825172.chain_3082,blat.proc3825172.chain_3083	6
scaffold_23	alternate_exon	10830585	10830617	+	asmbl_31874	none	STRG.26281.1,blat.proc3825176.chain_3266	2	STRG.26281.2	1
scaffold_28	starts_in_intron	2925632	2925632	+	asmbl_37424	none	blat.proc3825178.chain_2653	1	STRG.29487.1,blat.proc3825178.chain_2652	2
scaffold_1	alt_acceptor	12792304	12792305	-	asmbl_763,asmbl_766	none	STRG.901.1,blat.proc3825148.chain_883,blat.proc3825148.chain_884	3	STRG.901.3	1
scaffold_15	ends_in_intron	2077353	2077353	-	asmbl_13988	none	Trinity_GG_10107_c0_g1_i3,blat.proc3825156.chain_2791	2	STRG.18002.1,STRG.18002.2,STRG.18002.3,blat.proc3825156.chain_2794	4
scaffold_2	alt_acceptor	11598059	11598060	+	asmbl_24758,asmbl_24759,asmbl_24761,asmbl_24762,asmbl_24763	none	STRG.2268.1,blat.proc3825164.chain_2376,blat.proc3825164.chain_2377,blat.proc3825164.chain_2378,blat.proc3825164.chain_2379,blat.proc3825164.chain_2380,blat.proc3825164.chain_2381,blat.proc3825164.chain_2382	8	STRG.2268.2,STRG.2268.3	2
scaffold_4	alt_acceptor	10451854	10451855	-	asmbl_42848,asmbl_42854	none	STRG.4796.1,blat.proc3825150.chain_912,blat.proc3825150.chain_913	3	STRG.4796.2,blat.proc3825150.chain_914	2
scaffold_27	alt_donor	3093431	3093432	-	asmbl_36887	none	STRG.28796.5,blat.proc3825162.chain_2065	2	STRG.28796.2,STRG.28796.4,blat.proc3825162.chain_2066,blat.proc3825162.chain_2068	4
scaffold_26	ends_in_intron	426914	426914	+	asmbl_34681	none	blat.proc3825178.chain_940	1	STRG.27868.1,blat.proc3825178.chain_942	2
scaffold_27	alt_acceptor	571654	571655	+	asmbl_35951	none	STRG.28577.2,blat.proc3825178.chain_1668	2	blat.proc3825178.chain_1669	1
scaffold_14	retained_intron	1069987	1070084	+	asmbl_11789,asmbl_11790	none	Trinity_GG_26535_c0_g1_i1,Trinity_GG_26535_c0_g1_i7,blat.proc3825172.chain_1534,blat.proc3825172.chain_1538	4	STRG.16766.1,STRG.16766.2,STRG.16766.3,STRG.16766.4,STRG.16766.5,blat.proc3825172.chain_1533,blat.proc3825172.chain_1535,blat.proc3825172.chain_1536,blat.proc3825172.chain_1537,blat.proc3825172.chain_1539	10
scaffold_10	starts_in_intron	17156129	17156129	-	asmbl_5038	none	blat.proc3825154.chain_1755	1	STRG.13164.1,STRG.13164.2,blat.proc3825154.chain_1754,blat.proc3825154.chain_1757	4
scaffold_3	alt_donor	3251189	3251190	+	asmbl_39939	none	STRG.3072.2	1	STRG.3072.4,STRG.3072.5,STRG.3072.6	3
scaffold_2	retained_intron	3899965	3900066	+	asmbl_24320,asmbl_24322	none	blat.proc3825164.chain_1999,blat.proc3825164.chain_2002	2	STRG.1826.1,STRG.1826.2,STRG.1826.3,blat.proc3825164.chain_2000,blat.proc3825164.chain_2003,blat.proc3825164.chain_2004	6
scaffold_10	retained_intron	13282361	13283064	-	asmbl_4864	none	STRG.12922.1,STRG.12922.4,Trinity_GG_7237_c3_g1_i1,Trinity_GG_7237_c4_g1_i1,blat.proc3825154.chain_1550,blat.proc3825154.chain_1553,blat.proc3825154.chain_1554	7	STRG.12922.3	1
scaffold_4	ends_in_intron	12342068	12342068	-	asmbl_42900	none	Trinity_GG_2715_c0_g1_i2,blat.proc3825150.chain_1053	2	STRG.4868.1,STRG.4868.2,blat.proc3825150.chain_1054,blat.proc3825150.chain_1056	4
scaffold_18	retained_exon	13113652	13113777	+	asmbl_20993,asmbl_20994	none	STRG.21750.1,STRG.21750.3,blat.proc3825174.chain_2742	3	STRG.21750.2,blat.proc3825174.chain_2741,blat.proc3825174.chain_2743	3
scaffold_9	retained_intron	5473472	5473745	+	asmbl_54047	none	blat.proc3825168.chain_3598	1	STRG.11125.1,Trinity_GG_23479_c0_g1_i1,blat.proc3825168.chain_3597	3
scaffold_14	starts_in_intron	11551952	11551952	+	asmbl_12388	none	blat.proc3825172.chain_2214	1	STRG.17490.1,STRG.17490.2,blat.proc3825172.chain_2213	3
scaffold_13	spliced_intron	4462344	4462579	-	asmbl_9631,asmbl_9633	none	STRG.15771.1,STRG.15771.2,blat.proc3825156.chain_636	3	Trinity_GG_8857_c1_g1_i1,blat.proc3825156.chain_637	2
scaffold_9	ends_in_intron	12852349	12852349	+	asmbl_54477	none	blat.proc3825170.chain_465	1	Trinity_GG_23817_c0_g1_i1,blat.proc3825170.chain_466	2
scaffold_17	starts_in_intron	14125869	14125869	-	asmbl_18410	none	blat.proc3825158.chain_1863	1	STRG.20888.1	1
scaffold_6	alternate_exon	14137677	14137743	+	asmbl_47584	none	STRG.8176.2	1	STRG.8176.1,blat.proc3825168.chain_666,blat.proc3825168.chain_667	3
scaffold_3	starts_in_intron	14571188	14571188	-	asmbl_39400	none	blat.proc3825148.chain_3739	1	STRG.3797.1,STRG.3797.2,STRG.3797.3,blat.proc3825148.chain_3740,blat.proc3825148.chain_3741,blat.proc3825148.chain_3742	6
scaffold_12	spliced_intron	2662471	2662567	+	asmbl_7504	none	STRG.14507.3,blat.proc3825170.chain_3085	2	STRG.14507.1,blat.proc3825170.chain_3088	2
scaffold_4	retained_intron	11075139	11075573	+	asmbl_41700	none	STRG.4828.3,Trinity_GG_20019_c1_g1_i1,blat.proc3825166.chain_1288	3	STRG.4828.1,Trinity_GG_20019_c0_g1_i1,blat.proc3825166.chain_1286	3
scaffold_2	starts_in_intron	13052015	13052015	+	asmbl_24810	none	Trinity_GG_18599_c1_g1_i3,blat.proc3825164.chain_2478	2	STRG.2330.1,STRG.2330.2,STRG.2330.3,blat.proc3825164.chain_2479,blat.proc3825164.chain_2480,blat.proc3825164.chain_2481	6
scaffold_27	starts_in_intron	9434501	9434501	-	asmbl_37140,asmbl_37141	none	STRG.29189.2,STRG.29189.3,blat.proc3825162.chain_2344	3	STRG.29189.1,blat.proc3825162.chain_2345	2
scaffold_3	spliced_intron	14519626	14519705	-	asmbl_39388,asmbl_39390	none	STRG.3792.1,Trinity_GG_2106_c0_g1_i2,Trinity_GG_2106_c0_g1_i4,blat.proc3825148.chain_3749,blat.proc3825150.chain_1	5	Trinity_GG_2106_c0_g1_i5,blat.proc3825148.chain_3748	2
scaffold_4	spliced_intron	4423769	4423970	-	asmbl_42512,asmbl_42514	none	STRG.4343.1,STRG.4343.3,blat.proc3825150.chain_581	3	STRG.4343.2,blat.proc3825150.chain_580	2
scaffold_5	alternate_exon	10300251	10302100	-	asmbl_44339	none	Trinity_GG_3573_c3_g1_i1,blat.proc3825150.chain_2561	2	STRG.6332.1,STRG.6332.2,blat.proc3825150.chain_2557,blat.proc3825150.chain_2558	4
scaffold_7	retained_intron	12278830	12278991	+	asmbl_50241	none	blat.proc3825168.chain_1766	1	STRG.9323.1,blat.proc3825168.chain_1767	2
scaffold_6	alt_donor	3320928	3320929	-	asmbl_48245,asmbl_48247	none	STRG.7338.3,STRG.7338.4,blat.proc3825150.chain_3425	3	STRG.7338.1,blat.proc3825150.chain_3423,blat.proc3825150.chain_3424	3
scaffold_11	alt_acceptor	11935485	11935486	-	asmbl_7042,asmbl_7043	none	STRG.14177.2,STRG.14177.3	2	STRG.14177.4	1
scaffold_16	ends_in_intron	7230742	7230742	-	asmbl_17170	none	STRG.19399.5,blat.proc3825158.chain_476	2	STRG.19399.1,STRG.19399.2,STRG.19399.3,STRG.19399.4	4
scaffold_5	starts_in_intron	10890300	10890300	-	asmbl_44387	none	blat.proc3825150.chain_2464	1	STRG.6367.1,blat.proc3825150.chain_2460,blat.proc3825150.chain_2461	3
scaffold_21	alternate_exon	5155960	5156024	-	asmbl_27619	none	STRG.24050.1,Trinity_GG_13420_c0_g1_i1,blat.proc3825160.chain_1196	3	STRG.24050.2	1
scaffold_22	alternate_exon	230897	231684	-	asmbl_29077,asmbl_29081	none	STRG.24683.5,blat.proc3825160.chain_1905	2	STRG.24683.2,STRG.24683.3,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	4
scaffold_8	retained_intron	13132405	13133093	-	asmbl_52266,asmbl_52268	none	STRG.10488.2,blat.proc3825152.chain_2750,blat.proc3825152.chain_2751	3	blat.proc3825152.chain_2749	1
scaffold_26	retained_intron	9426206	9426291	-	asmbl_35779	none	Trinity_GG_15933_c0_g1_i1	1	STRG.28491.1	1
scaffold_25	retained_intron	8705312	8706427	+	asmbl_33751,asmbl_33754,asmbl_33758	none	STRG.27702.2,Trinity_GG_32580_c0_g1_i5,blat.proc3825178.chain_764,blat.proc3825178.chain_770,blat.proc3825178.chain_771	5	blat.proc3825178.chain_769	1
scaffold_11	retained_intron	17336336	17336476	+	asmbl_6212,asmbl_6213	none	STRG.14393.2,blat.proc3825170.chain_2938	2	STRG.14393.1,Trinity_GG_25249_c0_g1_i2,blat.proc3825170.chain_2937,blat.proc3825170.chain_2939	4
scaffold_17	alt_donor	8000313	8000314	+	asmbl_18929	none	STRG.20417.1,Trinity_GG_28452_c0_g1_i1	2	STRG.20417.2,Trinity_GG_28452_c0_g1_i2,blat.proc3825174.chain_1180	3
scaffold_16	skipped_exon	6143876	6144400	+	asmbl_16283,asmbl_16284	none	STRG.19354.1,STRG.19354.3	2	STRG.19354.2,blat.proc3825174.chain_141,blat.proc3825174.chain_143,blat.proc3825174.chain_144,blat.proc3825174.chain_145	5
scaffold_13	starts_in_intron	6758144	6758144	+	asmbl_10969	none	STRG.15967.2,Trinity_GG_26054_c0_g1_i2,blat.proc3825172.chain_650	3	STRG.15967.1,blat.proc3825172.chain_649,blat.proc3825172.chain_651	3
scaffold_15	alt_donor	4520364	4520365	-	asmbl_14148	none	STRG.18183.2	1	STRG.18183.1	1
scaffold_13	retained_intron	2270204	2270425	-	asmbl_9437,asmbl_9438,asmbl_9441,asmbl_9442,asmbl_9443	none	STRG.15548.3,STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_400	10	STRG.15548.1,STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	8
scaffold_15	retained_intron	11301555	11302007	+	asmbl_15495	none	blat.proc3825172.chain_3166	1	STRG.18603.1,blat.proc3825172.chain_3162,blat.proc3825172.chain_3163	3
scaffold_28	retained_intron	7234548	7234723	+	asmbl_37642	none	STRG.29785.2,Trinity_GG_33804_c1_g1_i1,blat.proc3825178.chain_2933	3	blat.proc3825178.chain_2932	1
scaffold_24	starts_in_intron	9121548	9121548	+	asmbl_32519	none	blat.proc3825178.chain_96	1	STRG.26939.2,blat.proc3825178.chain_97	2
scaffold_1	retained_intron	12788561	12788665	-	asmbl_762	none	STRG.901.2,blat.proc3825148.chain_885	2	STRG.901.1,STRG.901.3,blat.proc3825148.chain_882,blat.proc3825148.chain_884	4
scaffold_6	alt_acceptor	18920636	18920637	-	asmbl_49291	none	STRG.8561.3,blat.proc3825152.chain_1001	2	STRG.8561.1,STRG.8561.2,blat.proc3825152.chain_1000	3
scaffold_20	alternate_exon	6948706	6948956	-	asmbl_25858,asmbl_25859	none	blat.proc3825160.chain_306,blat.proc3825160.chain_307	2	STRG.23269.2,STRG.23269.3,STRG.23269.5,blat.proc3825160.chain_305	4
scaffold_9	retained_intron	8396091	8396249	+	asmbl_54170	none	blat.proc3825170.chain_61	1	STRG.11261.1,STRG.11261.2,STRG.11261.3,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_62	6
scaffold_2	ends_in_intron	10598973	10598973	+	asmbl_24708	none	blat.proc3825164.chain_2395	1	STRG.2220.1,blat.proc3825164.chain_2394	2
scaffold_2	starts_in_intron	17837404	17837404	-	asmbl_23755	none	Trinity_GG_1404_c0_g1_i3,blat.proc3825148.chain_2521	2	STRG.2679.1,blat.proc3825148.chain_2520,blat.proc3825148.chain_2523	3
scaffold_22	starts_in_intron	685499	685499	+	asmbl_29877	none	STRG.24720.2,Trinity_GG_30975_c0_g1_i2,blat.proc3825176.chain_1839	3	STRG.24720.1	1
scaffold_9	starts_in_intron	11844858	11844858	-	asmbl_55326	none	STRG.11513.2	1	STRG.11513.1,blat.proc3825152.chain_3660,blat.proc3825152.chain_3662	3
scaffold_5	alt_donor	15043288	15043289	-	asmbl_44633,asmbl_44639	none	STRG.6698.2,STRG.6698.6,blat.proc3825150.chain_2829,blat.proc3825150.chain_2831	4	STRG.6698.3,blat.proc3825150.chain_2828	2
scaffold_3	spliced_intron	17831614	17832488	+	asmbl_40698	none	STRG.3996.1,blat.proc3825166.chain_502	2	STRG.3996.2,blat.proc3825166.chain_505	2
scaffold_19	spliced_intron	3560904	3561075	+	asmbl_21328,asmbl_21329	none	STRG.22045.3,STRG.22045.4	2	STRG.22045.2,Trinity_GG_29503_c0_g1_i5,Trinity_GG_29503_c2_g1_i1,blat.proc3825174.chain_3074,blat.proc3825174.chain_3075,blat.proc3825174.chain_3080	6
scaffold_1	retained_intron	6320286	6320404	-	asmbl_356	none	blat.proc3825148.chain_336	1	STRG.429.1,blat.proc3825148.chain_334,blat.proc3825148.chain_335	3
scaffold_2	retained_intron	17708369	17708455	-	asmbl_23739,asmbl_23740	none	STRG.2662.3,blat.proc3825148.chain_2600	2	STRG.2662.1,STRG.2662.2,blat.proc3825148.chain_2601	3
scaffold_10	starts_in_intron	2721205	2721205	+	asmbl_3001	none	blat.proc3825170.chain_793	1	STRG.12090.1,STRG.12090.2,Trinity_GG_24012_c0_g1_i3,Trinity_GG_24012_c0_g1_i4,blat.proc3825170.chain_792,blat.proc3825170.chain_794,blat.proc3825170.chain_795	7
scaffold_8	alt_donor	6809250	6809251	-	asmbl_51891	none	STRG.10044.3	1	STRG.10044.1,blat.proc3825152.chain_2305,blat.proc3825152.chain_2306	3
scaffold_20	alternate_exon	6181791	6181823	+	asmbl_26655	none	blat.proc3825176.chain_398	1	STRG.23224.1,blat.proc3825176.chain_397	2
scaffold_21	ends_in_intron	8200709	8200709	-	asmbl_27900	none	STRG.24358.2,blat.proc3825160.chain_1491	2	STRG.24358.1,blat.proc3825160.chain_1492	2
scaffold_19	retained_intron	12821262	12821857	-	asmbl_22546,asmbl_22547,asmbl_22553,asmbl_22554	none	blat.proc3825158.chain_3409,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3413	4	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3412,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	5
scaffold_11	starts_in_intron	6070888	6070888	+	asmbl_5607,asmbl_5609	none	STRG.13670.2,STRG.13670.3,blat.proc3825170.chain_2150	3	STRG.13670.1	1
scaffold_8	spliced_intron	16501765	16501850	-	asmbl_52403,asmbl_52404,asmbl_52411,asmbl_52413,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52419,asmbl_52420,asmbl_52421,asmbl_52422	none	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2928,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939,blat.proc3825152.chain_2941	13	Trinity_GG_5934_c0_g1_i14,blat.proc3825152.chain_2927,blat.proc3825152.chain_2933	3
scaffold_11	alt_donor	2090208	2090209	+	asmbl_5361,asmbl_5362	none	STRG.13371.1,STRG.13371.2,blat.proc3825170.chain_1927,blat.proc3825170.chain_1928	4	STRG.13371.3,blat.proc3825170.chain_1929	2
scaffold_4	retained_exon	5230622	5230742	-	asmbl_42573	none	STRG.4416.5,blat.proc3825150.chain_649	2	STRG.4416.2,STRG.4416.4,blat.proc3825150.chain_648	3
scaffold_23	retained_exon	2207677	2207979	-	asmbl_30714	none	STRG.25698.1	1	STRG.25698.3,STRG.25698.6	2
scaffold_11	spliced_intron	17375833	17376038	+	asmbl_6220,asmbl_6223,asmbl_6224,asmbl_6225	none	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2881,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	5	Trinity_GG_25216_c0_g1_i4,blat.proc3825170.chain_2880	2
scaffold_10	retained_intron	9060945	9061043	-	asmbl_4670	none	blat.proc3825154.chain_1204	1	STRG.12655.3,blat.proc3825154.chain_1203	2
scaffold_10	alt_acceptor	16475883	16475884	-	asmbl_5009	none	STRG.13119.3	1	STRG.13119.1,STRG.13119.4	2
scaffold_8	alt_acceptor	8651668	8651669	+	asmbl_53024	none	STRG.10131.2	1	STRG.10131.1	1
scaffold_3	retained_intron	14424172	14424368	+	asmbl_40519	none	Trinity_GG_19450_c0_g1_i1,Trinity_GG_19450_c0_g1_i3,blat.proc3825166.chain_304,blat.proc3825166.chain_306	4	STRG.3788.1,STRG.3788.2,Trinity_GG_19450_c0_g1_i2,Trinity_GG_19450_c0_g1_i4,blat.proc3825166.chain_302,blat.proc3825166.chain_305	6
scaffold_19	starts_in_intron	7583511	7583511	+	asmbl_21473	none	blat.proc3825174.chain_3235	1	STRG.22236.1,STRG.22236.2,blat.proc3825174.chain_3233,blat.proc3825174.chain_3236	4
scaffold_2	retained_intron	15263572	15263652	+	asmbl_24994	none	blat.proc3825164.chain_2588	1	STRG.2484.1,blat.proc3825164.chain_2587	2
scaffold_14	retained_intron	8330057	8330148	-	asmbl_13287	none	blat.proc3825156.chain_2005	1	STRG.17260.1,blat.proc3825156.chain_2004	2
scaffold_1	alt_donor	15888312	15888313	+	asmbl_2454	none	STRG.1119.1,Trinity_GG_17960_c0_g1_i1,Trinity_GG_17960_c0_g1_i2,blat.proc3825164.chain_1258,blat.proc3825164.chain_1259	5	STRG.1119.3,Trinity_GG_17960_c0_g1_i3,blat.proc3825164.chain_1261	3
scaffold_22	spliced_intron	9537969	9539952	-	asmbl_29545,asmbl_29546	none	blat.proc3825160.chain_2393,blat.proc3825160.chain_2394	2	STRG.25286.1,Trinity_GG_14118_c2_g1_i1,Trinity_GG_14118_c3_g1_i1,Trinity_GG_14118_c4_g1_i1,Trinity_GG_14118_c5_g1_i1,blat.proc3825160.chain_2397	6
scaffold_4	alternate_exon	4111314	4112609	-	asmbl_42481	none	STRG.4317.2,blat.proc3825150.chain_482	2	blat.proc3825150.chain_478,blat.proc3825150.chain_481	2
scaffold_19	retained_intron	7701981	7702197	+	asmbl_21491	none	blat.proc3825174.chain_3257	1	STRG.22255.1,STRG.22255.2,STRG.22255.3,blat.proc3825174.chain_3256	4
scaffold_2	ends_in_intron	4597827	4597827	+	asmbl_24370	none	blat.proc3825164.chain_1943	1	STRG.1885.1,blat.proc3825164.chain_1944	2
scaffold_13	ends_in_intron	16437224	16437224	+	asmbl_11578	none	Trinity_GG_26477_c0_g1_i2,blat.proc3825172.chain_1425	2	STRG.16696.1,STRG.16696.2,Trinity_GG_26477_c0_g1_i1,Trinity_GG_26477_c0_g1_i5,blat.proc3825172.chain_1424,blat.proc3825172.chain_1426,blat.proc3825172.chain_1427	7
scaffold_21	spliced_intron	2654346	2654855	-	asmbl_27483,asmbl_27485	none	STRG.23906.1,Trinity_GG_13292_c0_g1_i2,Trinity_GG_13292_c0_g1_i3,blat.proc3825160.chain_976,blat.proc3825160.chain_981	5	STRG.23906.2,STRG.23906.3,Trinity_GG_13292_c0_g1_i8,blat.proc3825160.chain_977,blat.proc3825160.chain_980,blat.proc3825160.chain_982,blat.proc3825160.chain_983	7
scaffold_26	ends_in_intron	2927146	2927146	+	asmbl_34759	none	blat.proc3825178.chain_1026	1	STRG.27977.1,STRG.27977.2,Trinity_GG_32743_c0_g1_i1,blat.proc3825178.chain_1025	4
scaffold_5	alt_donor	19275222	19275223	+	asmbl_46313	none	STRG.7028.2,Trinity_GG_21182_c0_g1_i3,blat.proc3825166.chain_3242	3	STRG.7028.4	1
scaffold_4	skipped_exon	5677456	5678803	+	asmbl_41365	none	STRG.4467.1,blat.proc3825166.chain_933	2	STRG.4467.2	1
scaffold_23	alternate_exon	246227	246311	-	asmbl_30570	none	STRG.25548.2,blat.proc3825160.chain_2706	2	STRG.25548.1,STRG.25548.3,blat.proc3825160.chain_2704,blat.proc3825160.chain_2705	4
scaffold_8	alternate_exon	850418	850614	+	asmbl_52671	none	STRG.9743.1	1	STRG.9743.3,blat.proc3825168.chain_2253	2
scaffold_15	retained_intron	14322902	14323125	-	asmbl_14711,asmbl_14712	none	Trinity_GG_10597_c0_g1_i4,Trinity_GG_10597_c0_g1_i7	2	Trinity_GG_10597_c0_g1_i3,Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712,blat.proc3825156.chain_3718	4
scaffold_7	alt_donor	5927823	5927824	+	asmbl_49830	none	STRG.8902.4,blat.proc3825168.chain_1372	2	STRG.8902.1,STRG.8902.2,STRG.8902.3,Trinity_GG_22209_c0_g1_i3,Trinity_GG_22209_c0_g1_i4,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1373,blat.proc3825168.chain_1375,blat.proc3825168.chain_1376	9
scaffold_10	retained_intron	1425809	1425931	+	asmbl_2932,asmbl_2934,asmbl_2936,asmbl_2938	none	STRG.12016.2,STRG.12016.3,Trinity_GG_23995_c0_g1_i4,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_759,blat.proc3825170.chain_762,blat.proc3825170.chain_765	7	blat.proc3825170.chain_761	1
scaffold_10	spliced_intron	774816	774931	+	asmbl_2874	none	blat.proc3825170.chain_659	1	blat.proc3825170.chain_654,blat.proc3825170.chain_655,blat.proc3825170.chain_660,blat.proc3825170.chain_661	4
scaffold_8	alt_acceptor	4341173	4341174	+	asmbl_52836	none	STRG.9915.1,blat.proc3825168.chain_2487	2	STRG.9915.3,blat.proc3825168.chain_2490	2
scaffold_17	ends_in_intron	10074560	10074560	+	asmbl_19172	none	blat.proc3825174.chain_1517	1	STRG.20631.1,STRG.20631.2,Trinity_GG_28612_c0_g1_i2,Trinity_GG_28612_c0_g1_i4,blat.proc3825174.chain_1513,blat.proc3825174.chain_1514,blat.proc3825174.chain_1515	7
scaffold_15	alt_acceptor	11140818	11140819	-	asmbl_14487	none	blat.proc3825156.chain_3385	1	blat.proc3825156.chain_3380,blat.proc3825156.chain_3382,blat.proc3825156.chain_3383,blat.proc3825156.chain_3384,blat.proc3825156.chain_3386	5
scaffold_6	alternate_exon	2479129	2479542	-	asmbl_48130	none	STRG.7245.2	1	STRG.7245.1,STRG.7245.3,STRG.7245.4,blat.proc3825150.chain_3360,blat.proc3825150.chain_3361	5
scaffold_21	alternate_exon	9926758	9930760	-	asmbl_27989,asmbl_27991,asmbl_27993	none	STRG.24461.1,STRG.24461.3,STRG.24461.4,blat.proc3825160.chain_1641	4	STRG.24461.5	1
scaffold_21	retained_exon	693823	693966	+	asmbl_28283	none	STRG.23756.1	1	STRG.23756.2	1
scaffold_9	spliced_intron	8934348	8934433	+	asmbl_54181,asmbl_54182	none	STRG.11279.2,STRG.11279.3,blat.proc3825170.chain_95	3	blat.proc3825170.chain_94	1
scaffold_10	spliced_intron	12946554	12946681	+	asmbl_3560	none	STRG.12888.1,Trinity_GG_24424_c0_g1_i1,blat.proc3825170.chain_1517	3	Trinity_GG_24424_c0_g1_i2,blat.proc3825170.chain_1516	2
scaffold_20	alt_donor	7185347	7185348	-	asmbl_25885,asmbl_25886	none	STRG.23287.1,blat.proc3825160.chain_384	2	blat.proc3825160.chain_383	1
scaffold_5	spliced_intron	2400901	2400920	+	asmbl_45166	none	blat.proc3825166.chain_1991	1	STRG.5768.2,Trinity_GG_20458_c1_g1_i1	2
scaffold_28	retained_intron	8051811	8052141	+	asmbl_37720	none	Trinity_GG_33824_c0_g1_i2,blat.proc3825178.chain_2970	2	STRG.29872.1,Trinity_GG_33824_c0_g1_i1,blat.proc3825178.chain_2971	3
scaffold_2	alt_acceptor	18045476	18045477	+	asmbl_25217	none	STRG.2692.1,Trinity_GG_18844_c0_g1_i1	2	STRG.2692.2	1
scaffold_24	retained_intron	6297543	6297691	+	asmbl_32301	none	STRG.26687.3,Trinity_GG_32069_c0_g1_i3,blat.proc3825176.chain_3642	3	STRG.26687.1,Trinity_GG_32069_c0_g1_i1,blat.proc3825176.chain_3641	3
scaffold_15	alternate_exon	15353552	15353635	+	asmbl_15757,asmbl_15758	none	Trinity_GG_27686_c0_g1_i7,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3561	4	STRG.18922.1,STRG.18922.2,blat.proc3825172.chain_3563,blat.proc3825172.chain_3564,blat.proc3825172.chain_3566	5
scaffold_17	starts_in_intron	8540413	8540413	+	asmbl_18994	none	blat.proc3825174.chain_1316	1	STRG.20467.2	1
scaffold_15	starts_in_intron	14038251	14038251	+	asmbl_15669	none	blat.proc3825172.chain_3475	1	STRG.18840.1,blat.proc3825172.chain_3474	2
scaffold_4	alternate_exon	17912424	17912495	-	asmbl_43325,asmbl_43326	none	blat.proc3825150.chain_1543,blat.proc3825150.chain_1544	2	STRG.5387.3	1
scaffold_10	spliced_intron	8917894	8918183	+	asmbl_3343	none	blat.proc3825170.chain_1196	1	STRG.12642.1,blat.proc3825170.chain_1197	2
scaffold_28	alternate_exon	7306569	7307599	-	asmbl_38394	none	STRG.29803.3	1	STRG.29803.2,Trinity_GG_16722_c0_g1_i1,blat.proc3825162.chain_2987	3
scaffold_1	alternate_exon	12746050	12750834	-	asmbl_751	none	STRG.895.1,blat.proc3825148.chain_850	2	STRG.895.3,STRG.895.4,blat.proc3825148.chain_851	3
scaffold_4	retained_intron	12691056	12691283	-	asmbl_42953	none	STRG.4910.4,blat.proc3825150.chain_1021	2	STRG.4910.1,STRG.4910.3,blat.proc3825150.chain_1018,blat.proc3825150.chain_1019	4
scaffold_28	alternate_exon	4202546	4203362	+	asmbl_37520	none	STRG.29616.1	1	STRG.29616.4,STRG.29616.5,Trinity_GG_33739_c1_g1_i1,blat.proc3825178.chain_2815,blat.proc3825178.chain_2816	5
scaffold_20	ends_in_intron	7183054	7183054	+	asmbl_26701,asmbl_26704	none	blat.proc3825176.chain_465,blat.proc3825176.chain_468	2	STRG.23286.1	1
scaffold_3	retained_intron	13419144	13419405	-	asmbl_39259,asmbl_39260,asmbl_39262,asmbl_39263	none	STRG.3693.1,STRG.3693.2,blat.proc3825148.chain_3583,blat.proc3825148.chain_3584,blat.proc3825148.chain_3585,blat.proc3825148.chain_3590	6	STRG.3693.3	1
scaffold_22	starts_in_intron	3831471	3831471	-	asmbl_29195	none	STRG.24815.1	1	STRG.24815.2,blat.proc3825160.chain_1932	2
scaffold_5	alternate_exon	131604	134958	+	asmbl_45071	none	STRG.5577.2,Trinity_GG_34179_c0_g1_i1,blat.proc3825178.chain_3547	3	STRG.5577.3	1
scaffold_5	alternate_exon	15704051	15704198	+	asmbl_46011	none	STRG.6765.3	1	STRG.6765.2	1
scaffold_28	alt_acceptor	8330162	8330163	-	asmbl_38459	none	STRG.29903.1,blat.proc3825162.chain_3082	2	STRG.29903.2,blat.proc3825162.chain_3083	2
scaffold_5	ends_in_intron	3497384	3497384	+	asmbl_45218	none	blat.proc3825166.chain_2067	1	STRG.5823.1,blat.proc3825166.chain_2066	2
scaffold_4	spliced_intron	11075139	11075573	+	asmbl_41698	none	STRG.4828.1,Trinity_GG_20019_c0_g1_i1,blat.proc3825166.chain_1286	3	STRG.4828.3,Trinity_GG_20019_c1_g1_i1,blat.proc3825166.chain_1288	3
scaffold_21	alternate_exon	7724601	7728282	+	asmbl_28764,asmbl_28765	none	STRG.24316.1,STRG.24316.3,blat.proc3825176.chain_1476	3	STRG.24316.4	1
scaffold_4	spliced_intron	11075139	11075491	+	asmbl_41699	none	STRG.4828.2,Trinity_GG_20019_c0_g1_i2,blat.proc3825166.chain_1287	3	STRG.4828.3,Trinity_GG_20019_c1_g1_i1,blat.proc3825166.chain_1288	3
scaffold_27	retained_intron	4799664	4799998	-	asmbl_36971	none	Trinity_GG_16198_c0_g1_i1,blat.proc3825162.chain_2138	2	STRG.28911.1,STRG.28911.2,Trinity_GG_16198_c0_g1_i2,blat.proc3825162.chain_2139	4
scaffold_28	alt_acceptor	1648053	1648054	-	asmbl_37998	none	STRG.29354.1,blat.proc3825162.chain_2512	2	STRG.29354.2	1
scaffold_28	spliced_intron	4875335	4875549	-	asmbl_38227,asmbl_38228	none	STRG.29645.1,STRG.29645.3,Trinity_GG_16590_c0_g1_i2,Trinity_GG_16590_c0_g1_i4,blat.proc3825162.chain_2763,blat.proc3825162.chain_2765	6	Trinity_GG_16590_c1_g1_i1,blat.proc3825162.chain_2766	2
scaffold_18	skipped_exon	3916195	3918126	-	asmbl_19783	none	STRG.21203.4	1	STRG.21203.2,STRG.21203.3,STRG.21203.5,blat.proc3825158.chain_2160	4
scaffold_3	alt_donor	14466999	14467000	+	asmbl_40524	none	STRG.3786.1,Trinity_GG_19437_c0_g1_i1,blat.proc3825166.chain_282	3	STRG.3786.2	1
scaffold_28	starts_in_intron	9268632	9268632	+	asmbl_37779	none	STRG.29970.3,Trinity_GG_33883_c0_g1_i1,blat.proc3825178.chain_3087	3	STRG.29970.2	1
scaffold_19	alt_acceptor	6213441	6213442	+	asmbl_21398	none	STRG.22153.3,blat.proc3825174.chain_3104	2	STRG.22153.1,STRG.22153.2,blat.proc3825174.chain_3106,blat.proc3825174.chain_3107	4
scaffold_12	spliced_intron	14124654	14125258	-	asmbl_8988,asmbl_8989,asmbl_8990,asmbl_8992	none	STRG.15244.1,STRG.15244.2,STRG.15244.3,blat.proc3825156.chain_78,blat.proc3825156.chain_79,blat.proc3825156.chain_81	6	Trinity_GG_8555_c1_g1_i1,blat.proc3825156.chain_80	2
scaffold_5	starts_in_intron	16022797	16022797	+	asmbl_46039	none	STRG.6789.3	1	STRG.6789.1	1
scaffold_8	starts_in_intron	11567128	11567128	+	asmbl_53234	none	STRG.10353.2,Trinity_GG_23085_c0_g1_i2,blat.proc3825168.chain_2938	3	STRG.10353.1	1
scaffold_12	alternate_exon	11360671	11364258	-	asmbl_8808	none	STRG.15079.1,blat.proc3825154.chain_3593	2	STRG.15079.2,Trinity_GG_8421_c0_g1_i1,blat.proc3825154.chain_3591	3
scaffold_2	retained_intron	6083683	6083943	-	asmbl_23178	none	Trinity_GG_1051_c0_g1_i9,blat.proc3825148.chain_1869	2	STRG.1980.2,Trinity_GG_1051_c0_g1_i5,blat.proc3825148.chain_1870	3
scaffold_1	ends_in_intron	8632804	8632804	-	asmbl_462,asmbl_464	none	Trinity_GG_304_c0_g1_i4,blat.proc3825148.chain_544,blat.proc3825148.chain_548	3	STRG.571.2,Trinity_GG_304_c0_g1_i5,blat.proc3825148.chain_546	3
scaffold_28	retained_intron	58885	58965	-	asmbl_37884	none	Trinity_GG_16368_c0_g1_i4,blat.proc3825162.chain_2398	2	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2400,blat.proc3825162.chain_2401,blat.proc3825162.chain_2402	5
scaffold_28	spliced_intron	5228162	5228266	-	asmbl_38260,asmbl_38263	none	STRG.29674.1,blat.proc3825162.chain_2846,blat.proc3825162.chain_2848	3	blat.proc3825162.chain_2844	1
scaffold_6	alt_acceptor	12003191	12003192	+	asmbl_47368	none	STRG.7971.3	1	STRG.7971.1,STRG.7971.2	2
scaffold_16	alternate_exon	1881631	1884654	+	asmbl_16103,asmbl_16104	none	STRG.19108.1,STRG.19108.2,Trinity_GG_27788_c0_g1_i1,Trinity_GG_27794_c0_g1_i1,blat.proc3825174.chain_17,blat.proc3825174.chain_35	6	Trinity_GG_27792_c0_g1_i1,blat.proc3825174.chain_31	2
scaffold_26	alternate_exon	1322137	1322176	-	asmbl_35399	none	blat.proc3825162.chain_1239	1	STRG.27913.2,STRG.27913.3	2
scaffold_9	starts_in_intron	7786179	7786179	+	asmbl_54140	none	blat.proc3825170.chain_72	1	STRG.11230.1,blat.proc3825170.chain_70,blat.proc3825170.chain_71,blat.proc3825170.chain_74,blat.proc3825170.chain_77	5
scaffold_1	alt_acceptor	20755349	20755350	+	asmbl_2653	none	blat.proc3825164.chain_1496	1	STRG.1422.2,blat.proc3825164.chain_1495	2
scaffold_4	spliced_intron	4417120	4417266	+	asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41254,asmbl_41255,asmbl_41257,asmbl_41258,asmbl_41261	none	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,blat.proc3825166.chain_842,blat.proc3825166.chain_847,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_851,blat.proc3825166.chain_854	12	Trinity_GG_19749_c0_g1_i2,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_850,blat.proc3825166.chain_853,blat.proc3825166.chain_855	5
scaffold_14	alternate_exon	2888063	2888160	-	asmbl_12982	none	blat.proc3825156.chain_1633	1	STRG.16887.1,STRG.16887.3,blat.proc3825156.chain_1636,blat.proc3825156.chain_1637	4
scaffold_12	starts_in_intron	4618610	4618610	-	asmbl_8424	none	blat.proc3825154.chain_3083	1	STRG.14640.1	1
scaffold_8	starts_in_intron	12321044	12321044	-	asmbl_52189	none	blat.proc3825152.chain_2634	1	STRG.10413.1,blat.proc3825152.chain_2632,blat.proc3825152.chain_2633,blat.proc3825152.chain_2636	4
scaffold_11	starts_in_intron	3254333	3254333	-	asmbl_6544,asmbl_6546	none	STRG.13458.2,blat.proc3825154.chain_2050	2	STRG.13458.1,blat.proc3825154.chain_2049	2
scaffold_10	retained_intron	5390028	5390782	+	asmbl_3168	none	Trinity_GG_24154_c0_g1_i2,blat.proc3825170.chain_1034	2	STRG.12365.1,blat.proc3825170.chain_1033	2
scaffold_23	alt_acceptor	7001775	7001776	-	asmbl_31004,asmbl_31006	none	STRG.26025.1,STRG.26025.3,STRG.26025.4,blat.proc3825160.chain_3182	4	STRG.26025.2,Trinity_GG_14562_c0_g1_i2,blat.proc3825160.chain_3183	3
scaffold_1	alternate_exon	3614090	3615322	-	asmbl_165	none	STRG.228.1,blat.proc3825148.chain_227	2	STRG.228.3,blat.proc3825148.chain_226	2
scaffold_27	alt_donor	2881196	2881197	+	asmbl_36144,asmbl_36145,asmbl_36146	none	STRG.28771.3,blat.proc3825178.chain_1938,blat.proc3825178.chain_1939,blat.proc3825178.chain_1940	4	STRG.28771.1,STRG.28771.2,blat.proc3825178.chain_1941,blat.proc3825178.chain_1943	4
scaffold_566	alt_acceptor	4174	4175	+	asmbl_46580	none	STRG.30397.1	1	blat.proc3825172.chain_735	1
scaffold_17	alt_donor	11036020	11036021	-	asmbl_18266	none	STRG.20664.1	1	STRG.20664.3	1
scaffold_12	alternate_exon	9754580	9757259	+	asmbl_7873	none	STRG.14948.1,blat.proc3825170.chain_3484	2	STRG.14948.2	1
scaffold_23	spliced_intron	10977476	10977635	+	asmbl_31898,asmbl_31900,asmbl_31905,asmbl_31906	none	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5	STRG.26307.2,STRG.26307.4,Trinity_GG_31796_c0_g1_i6,blat.proc3825176.chain_3178,blat.proc3825176.chain_3179,blat.proc3825176.chain_3181	6
scaffold_17	ends_in_intron	9489146	9489146	+	asmbl_19097	none	blat.proc3825174.chain_1445	1	STRG.20572.1,STRG.20572.2,STRG.20572.3,Trinity_GG_28585_c0_g1_i5,blat.proc3825174.chain_1444,blat.proc3825174.chain_1446,blat.proc3825174.chain_1447,blat.proc3825174.chain_1449,blat.proc3825174.chain_1450	9
scaffold_5	alt_acceptor	18560925	18560926	+	asmbl_46268,asmbl_46271,asmbl_46272,asmbl_46273	none	STRG.6987.1,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i4,Trinity_GG_21132_c0_g1_i7,Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3153,blat.proc3825166.chain_3154	8	STRG.6987.2,STRG.6987.3,STRG.6987.4,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i3,blat.proc3825166.chain_3149,blat.proc3825166.chain_3155	8
scaffold_2	spliced_intron	7876589	7876880	+	asmbl_24582,asmbl_24585,asmbl_24586,asmbl_24587,asmbl_24588	none	STRG.2082.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i14,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i18,Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2287,blat.proc3825164.chain_2289,blat.proc3825164.chain_2290,blat.proc3825164.chain_2292,blat.proc3825164.chain_2294	11	Trinity_GG_18501_c0_g1_i7,blat.proc3825164.chain_2288	2
scaffold_94	alt_acceptor	11016	11017	+	asmbl_55843	none	blat.proc3825178.chain_3259	1	STRG.30138.1	1
scaffold_21	alternate_exon	2601227	2602586	+	asmbl_28409	none	STRG.23893.1,blat.proc3825176.chain_1109	2	blat.proc3825176.chain_1108	1
scaffold_19	starts_in_intron	2651109	2651109	+	asmbl_21268	none	Trinity_GG_29456_c0_g1_i5,blat.proc3825174.chain_2988	2	STRG.21952.1,blat.proc3825174.chain_2989,blat.proc3825174.chain_2990	3
scaffold_6	retained_intron	7173476	7173600	+	asmbl_47057	none	blat.proc3825168.chain_84	1	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83	5
scaffold_24	alternate_exon	2397234	2397287	-	asmbl_32781	none	STRG.26459.2,blat.proc3825160.chain_3572	2	STRG.26459.1	1
scaffold_28	starts_in_intron	2660838	2660838	-	asmbl_38071	none	blat.proc3825162.chain_2638	1	STRG.29458.2,blat.proc3825162.chain_2637	2
scaffold_10	retained_exon	1976446	1976633	-	asmbl_4089	none	STRG.12049.3	1	STRG.12049.2,blat.proc3825154.chain_606	2
scaffold_16	spliced_intron	125457	125614	+	asmbl_16001	none	STRG.19007.4	1	Trinity_GG_27742_c0_g1_i1,Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3682,blat.proc3825172.chain_3684	4
scaffold_20	alt_acceptor	9543129	9543130	+	asmbl_26866	none	STRG.23491.2	1	STRG.23491.1,Trinity_GG_30230_c0_g1_i1,blat.proc3825176.chain_563	3
scaffold_2	spliced_intron	15274444	15274538	+	asmbl_25010,asmbl_25011,asmbl_25012,asmbl_25017,asmbl_25018,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2616,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7	Trinity_GG_18659_c1_g1_i2,blat.proc3825164.chain_2613	2
scaffold_17	alternate_exon	9595992	9596058	-	asmbl_18181,asmbl_18184	none	STRG.20580.2,blat.proc3825158.chain_1602	2	STRG.20580.3	1
scaffold_15	ends_in_intron	2013383	2013383	-	asmbl_13985	none	blat.proc3825156.chain_2783	1	STRG.17996.1,blat.proc3825156.chain_2784	2
scaffold_11	alt_donor	7051035	7051036	+	asmbl_5644,asmbl_5645,asmbl_5646	none	STRG.13733.3,STRG.13733.4,Trinity_GG_24878_c0_g1_i4,blat.proc3825170.chain_2269	4	STRG.13733.1,STRG.13733.2,STRG.13733.5,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2273	7
scaffold_5	retained_exon	17026978	17027051	+	asmbl_46130	none	STRG.6879.2,Trinity_GG_21018_c0_g1_i2,blat.proc3825166.chain_2967	3	STRG.6879.1	1
scaffold_14	retained_intron	1590384	1590520	-	asmbl_12897	none	blat.proc3825156.chain_1563	1	STRG.16799.4	1
scaffold_4	alternate_exon	4414008	4414070	+	asmbl_41258	none	blat.proc3825166.chain_842	1	STRG.4349.3,Trinity_GG_19749_c0_g1_i21,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_843,blat.proc3825166.chain_845,blat.proc3825166.chain_850,blat.proc3825166.chain_852	7
scaffold_7	spliced_intron	9149763	9149863	+	asmbl_50070	none	STRG.9132.1	1	Trinity_GG_22380_c0_g1_i1,blat.proc3825168.chain_1651	2
scaffold_2	retained_intron	14560804	14561388	+	asmbl_24949,asmbl_24962	none	Trinity_GG_18675_c0_g1_i21,blat.proc3825164.chain_2655,blat.proc3825164.chain_2659	3	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11
scaffold_4	alt_donor	13412094	13412095	-	asmbl_42995	none	STRG.4970.1,blat.proc3825150.chain_1106	2	STRG.4970.2	1
scaffold_21	skipped_exon	4904191	4904476	-	asmbl_27598	none	STRG.24034.2	1	STRG.24034.1	1
scaffold_25	starts_in_intron	8706600	8706600	+	asmbl_33760	none	blat.proc3825178.chain_767	1	STRG.27702.1,STRG.27702.3,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_762,blat.proc3825178.chain_763,blat.proc3825178.chain_768	6
scaffold_14	alt_acceptor	5947846	5947847	-	asmbl_13104	none	STRG.17059.2	1	STRG.17059.1,blat.proc3825156.chain_1785	2
scaffold_11	starts_in_intron	3763806	3763806	+	asmbl_5461	none	blat.proc3825170.chain_1999	1	STRG.13507.1,blat.proc3825170.chain_2000	2
scaffold_9	retained_intron	16738714	16738866	-	asmbl_55622,asmbl_55623	none	Trinity_GG_6538_c0_g1_i3,Trinity_GG_6538_c0_g1_i4,blat.proc3825154.chain_308,blat.proc3825154.chain_309	4	STRG.11819.1,STRG.11819.2,Trinity_GG_6538_c0_g1_i1,blat.proc3825154.chain_307	4
scaffold_1	alternate_exon	14420418	14420443	-	asmbl_920	none	STRG.1042.3	1	STRG.1042.1,STRG.1042.2,blat.proc3825148.chain_1058	3
scaffold_22	alt_donor	485089	485090	+	asmbl_29856	none	blat.proc3825176.chain_1752	1	STRG.24694.1,Trinity_GG_30924_c0_g1_i3,blat.proc3825176.chain_1751	3
scaffold_9	spliced_intron	9664373	9664460	-	asmbl_55229	none	STRG.11345.1	1	blat.proc3825152.chain_3619	1
scaffold_1	alt_donor	3270863	3270864	-	asmbl_140,asmbl_142	none	STRG.204.1,blat.proc3825148.chain_203,blat.proc3825148.chain_204	3	STRG.204.4	1
scaffold_2	retained_intron	8055440	8055709	-	asmbl_23305	none	STRG.2094.4,blat.proc3825148.chain_2118	2	blat.proc3825148.chain_2117	1
scaffold_6	alt_donor	7937103	7937104	-	asmbl_48516	none	STRG.7676.3	1	STRG.7676.2,STRG.7676.4,blat.proc3825152.chain_69	3
scaffold_21	retained_exon	3126397	3126458	-	asmbl_27514,asmbl_27516	none	STRG.23943.3,Trinity_GG_13335_c0_g1_i1,blat.proc3825160.chain_1056,blat.proc3825160.chain_1060	4	STRG.23943.4,blat.proc3825160.chain_1057	2
scaffold_3	spliced_intron	6200511	6200607	-	asmbl_38920,asmbl_38921	none	STRG.3263.1,STRG.3263.2,Trinity_GG_1767_c0_g1_i1,blat.proc3825148.chain_3109	4	STRG.3263.3,Trinity_GG_1767_c0_g1_i2,blat.proc3825148.chain_3110	3
scaffold_11	spliced_intron	13257061	13257404	+	asmbl_6041,asmbl_6042	none	STRG.14199.1,STRG.14199.2,blat.proc3825170.chain_2732	3	Trinity_GG_25137_c0_g1_i2,blat.proc3825170.chain_2730	2
scaffold_1	spliced_intron	3498732	3498894	-	asmbl_146,asmbl_147,asmbl_148,asmbl_149,asmbl_150,asmbl_151,asmbl_153,asmbl_154	none	STRG.221.1,STRG.221.2,STRG.221.4,blat.proc3825148.chain_213,blat.proc3825148.chain_214,blat.proc3825148.chain_215,blat.proc3825148.chain_216,blat.proc3825148.chain_218,blat.proc3825148.chain_219,blat.proc3825148.chain_220,blat.proc3825148.chain_221	11	blat.proc3825148.chain_217	1
scaffold_15	retained_intron	12537084	12537192	-	asmbl_14582	none	blat.proc3825156.chain_3557	1	STRG.18709.3,blat.proc3825156.chain_3556	2
scaffold_26	alternate_exon	1318707	1322176	-	asmbl_35398	none	STRG.27913.1	1	STRG.27913.2,STRG.27913.3	2
scaffold_12	spliced_intron	4721240	4721269	-	asmbl_8435	none	STRG.14649.4	1	STRG.14649.1,Trinity_GG_8146_c0_g1_i5,blat.proc3825154.chain_3098,blat.proc3825154.chain_3100	4
scaffold_6	retained_intron	1345974	1346244	-	asmbl_48096	none	STRG.7183.1,Trinity_GG_4002_c0_g1_i2,blat.proc3825150.chain_3278,blat.proc3825150.chain_3279	4	STRG.7183.2,STRG.7183.3,blat.proc3825150.chain_3280	3
scaffold_17	ends_in_intron	10008923	10008923	+	asmbl_19153	none	Trinity_GG_28603_c0_g1_i2	1	STRG.20616.1,STRG.20616.2,Trinity_GG_28603_c0_g1_i1,Trinity_GG_28603_c0_g1_i3	4
scaffold_9	alt_acceptor	11829824	11829825	-	asmbl_55320	none	STRG.11499.1	1	STRG.11499.2	1
scaffold_14	retained_intron	2886580	2886644	-	asmbl_12980,asmbl_12981,asmbl_12983	none	STRG.16887.1,STRG.16887.2,STRG.16887.4,blat.proc3825156.chain_1635	4	STRG.16887.3,blat.proc3825156.chain_1633	2
scaffold_9	starts_in_intron	4206808	4206808	+	asmbl_53944	none	blat.proc3825168.chain_3485	1	STRG.11024.2,STRG.11024.3,STRG.11024.4,blat.proc3825168.chain_3484,blat.proc3825168.chain_3486	5
scaffold_26	retained_intron	6703606	6703786	-	asmbl_35697,asmbl_35699	none	blat.proc3825162.chain_1601,blat.proc3825162.chain_1605	2	STRG.28371.1,STRG.28371.2,STRG.28371.3,blat.proc3825162.chain_1602,blat.proc3825162.chain_1604	5
scaffold_15	alt_donor	1963729	1963730	+	asmbl_15043	none	blat.proc3825172.chain_2697	1	STRG.17992.3	1
scaffold_6	skipped_exon	878149	878728	+	asmbl_46684	none	STRG.7158.2	1	STRG.7158.3	1
scaffold_10	starts_in_intron	11501613	11501613	+	asmbl_3466	none	STRG.12804.1,blat.proc3825170.chain_1364	2	blat.proc3825170.chain_1363	1
scaffold_16	alt_donor	3979150	3979151	-	asmbl_17025	none	STRG.19215.3	1	STRG.19215.1,STRG.19215.2,blat.proc3825158.chain_345	3
scaffold_2382	alt_donor	603	604	-	asmbl_31997	none	blat.proc3825178.chain_997	1	STRG.30748.1,blat.proc3825164.chain_2	2
scaffold_3	starts_in_intron	10277612	10277612	+	asmbl_40249	none	Trinity_GG_19271_c0_g1_i7,blat.proc3825164.chain_3729	2	STRG.3467.1,STRG.3467.2,blat.proc3825164.chain_3728,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733,blat.proc3825164.chain_3734,blat.proc3825164.chain_3735	7
scaffold_28	retained_intron	2724883	2725090	+	asmbl_37406	none	STRG.29459.3,Trinity_GG_33661_c1_g1_i6	2	STRG.29459.1,STRG.29459.2	2
scaffold_1	alt_donor	20135380	20135381	-	asmbl_1171	none	STRG.1386.2	1	STRG.1386.1,STRG.1386.5,STRG.1386.6,STRG.1386.7,blat.proc3825148.chain_1398	5
scaffold_16	spliced_intron	3706689	3706988	+	asmbl_16147,asmbl_16149	none	STRG.19177.1,blat.proc3825174.chain_106,blat.proc3825174.chain_107	3	blat.proc3825174.chain_108	1
scaffold_18	alternate_exon	2834126	2835064	+	asmbl_20425	none	STRG.21142.5,blat.proc3825174.chain_2048	2	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2056	4
scaffold_10	spliced_intron	4524826	4524957	-	asmbl_4296	none	blat.proc3825154.chain_749	1	blat.proc3825154.chain_750	1
scaffold_10	starts_in_intron	950254	950254	+	asmbl_2894	none	Trinity_GG_23961_c0_g1_i2,blat.proc3825170.chain_707	2	STRG.11975.1,Trinity_GG_23961_c0_g1_i1,Trinity_GG_23961_c0_g1_i3,Trinity_GG_23961_c0_g1_i4,blat.proc3825170.chain_705,blat.proc3825170.chain_706,blat.proc3825170.chain_708	7
scaffold_11	alt_acceptor	15711192	15711193	+	asmbl_6126	none	STRG.14313.1,blat.proc3825170.chain_2838	2	blat.proc3825170.chain_2837	1
scaffold_6	ends_in_intron	18053820	18053820	-	asmbl_49227	none	blat.proc3825152.chain_921	1	STRG.8487.4	1
scaffold_7	retained_exon	5916586	5916676	-	asmbl_50900	none	STRG.8897.3,blat.proc3825152.chain_1285	2	STRG.8897.1,blat.proc3825152.chain_1287	2
scaffold_12	alternate_exon	14131622	14131689	+	asmbl_8055	none	STRG.15242.3	1	STRG.15242.1,STRG.15242.2,blat.proc3825170.chain_3741	3
scaffold_12	alt_donor	6527130	6527131	-	asmbl_8540,asmbl_8542	none	STRG.14748.2,blat.proc3825154.chain_3259,blat.proc3825154.chain_3260	3	STRG.14748.1	1
scaffold_7	alt_donor	12386905	12386906	-	asmbl_51204	none	STRG.9338.1,blat.proc3825152.chain_1659	2	blat.proc3825152.chain_1655,blat.proc3825152.chain_1657,blat.proc3825152.chain_1660,blat.proc3825152.chain_1661	4
scaffold_10	retained_intron	6075361	6075518	-	asmbl_4425,asmbl_4426	none	blat.proc3825154.chain_1026,blat.proc3825154.chain_1027	2	blat.proc3825154.chain_1034	1
scaffold_2	retained_intron	9791343	9791807	+	asmbl_24688	none	Trinity_GG_18541_c0_g1_i4,blat.proc3825164.chain_2362	2	STRG.2185.1,Trinity_GG_18541_c0_g1_i1,Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2361,blat.proc3825164.chain_2363,blat.proc3825164.chain_2364,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	8
scaffold_6	alt_acceptor	2478898	2478899	-	asmbl_48127,asmbl_48128,asmbl_48131	none	STRG.7245.1,STRG.7245.3,STRG.7245.4,blat.proc3825150.chain_3360,blat.proc3825150.chain_3361	5	STRG.7245.2	1
scaffold_26	ends_in_intron	9849941	9849941	+	asmbl_35280	none	blat.proc3825178.chain_1584	1	STRG.28546.1,STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1575,blat.proc3825178.chain_1576,blat.proc3825178.chain_1577,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	13
scaffold_4	alt_acceptor	6246838	6246839	+	asmbl_41380	none	STRG.4494.3,blat.proc3825166.chain_943	2	STRG.4494.1,STRG.4494.2,blat.proc3825166.chain_945	3
scaffold_24	starts_in_intron	729440	729440	-	asmbl_32706	none	Trinity_GG_14732_c0_g1_i3,blat.proc3825160.chain_3474	2	STRG.26355.1,Trinity_GG_14732_c0_g1_i1,blat.proc3825160.chain_3473	3
scaffold_500	spliced_intron	1334	1625	+	asmbl_46488,asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492	none	STRG.30357.1,STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6,Trinity_GG_34112_c0_g1_i2,blat.proc3825178.chain_3435	7	blat.proc3825178.chain_3437	1
scaffold_1	alternate_exon	849973	850047	+	asmbl_1418,asmbl_1419	none	STRG.42.1,STRG.42.2,Trinity_GG_17343_c0_g1_i2,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_125,blat.proc3825164.chain_127	6	STRG.42.3,STRG.42.4	2
scaffold_6	ends_in_intron	3025779	3025779	-	asmbl_48214	none	Trinity_GG_4103_c2_g1_i1,blat.proc3825150.chain_3452	2	STRG.7309.1,blat.proc3825150.chain_3451	2
scaffold_18	spliced_intron	7867750	7867862	+	asmbl_20799,asmbl_20800,asmbl_20804	none	STRG.21488.1,STRG.21488.2,Trinity_GG_29146_c0_g1_i18,blat.proc3825174.chain_2452,blat.proc3825174.chain_2456,blat.proc3825174.chain_2458,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	8	STRG.21488.4,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i11,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2453	7
scaffold_3	spliced_intron	1767415	1767456	+	asmbl_39880	none	STRG.2994.4	1	Trinity_GG_19006_c0_g1_i3,blat.proc3825164.chain_3228	2
scaffold_26	skipped_exon	1994012	1995174	+	asmbl_34727	none	blat.proc3825178.chain_995	1	STRG.27942.1,STRG.27942.2	2
scaffold_18	starts_in_intron	2539303	2539303	+	asmbl_20413	none	Trinity_GG_28922_c0_g1_i1,blat.proc3825174.chain_2032	2	STRG.21125.1,STRG.21125.2,blat.proc3825174.chain_2033	3
scaffold_8	starts_in_intron	6025125	6025125	+	asmbl_52929	none	blat.proc3825168.chain_2612	1	blat.proc3825168.chain_2609,blat.proc3825168.chain_2610,blat.proc3825168.chain_2611,blat.proc3825168.chain_2613	4
scaffold_19	retained_exon	7703845	7703874	+	asmbl_21488,asmbl_21489,asmbl_21491	none	STRG.22255.1,STRG.22255.2,Trinity_GG_29606_c0_g2_i1,blat.proc3825174.chain_3256,blat.proc3825174.chain_3257,blat.proc3825174.chain_3258	6	STRG.22255.3	1
scaffold_7	alternate_exon	18398457	18398536	+	asmbl_50522	none	STRG.9669.3,blat.proc3825168.chain_2182	2	STRG.9669.1,STRG.9669.2,blat.proc3825168.chain_2179,blat.proc3825168.chain_2181	4
scaffold_5	starts_in_intron	6666582	6666582	-	asmbl_44127	none	STRG.6073.3,blat.proc3825150.chain_2278	2	STRG.6073.1,STRG.6073.2,blat.proc3825150.chain_2279	3
scaffold_19	retained_exon	13749588	13749644	+	asmbl_21886,asmbl_21887	none	STRG.22694.2,STRG.22694.3	2	STRG.22694.1,blat.proc3825174.chain_3684	2
scaffold_13	retained_intron	6615541	6615731	+	asmbl_10954	none	blat.proc3825172.chain_683	1	STRG.15957.1,blat.proc3825172.chain_681,blat.proc3825172.chain_682	3
scaffold_20	alt_donor	9656237	9656238	+	asmbl_26880	none	STRG.23507.2	1	STRG.23507.1,Trinity_GG_30297_c0_g1_i1,blat.proc3825176.chain_662	3
scaffold_13	alternate_exon	388062	388164	-	asmbl_9330	none	Trinity_GG_8662_c0_g1_i1,blat.proc3825156.chain_288	2	STRG.15438.1,blat.proc3825156.chain_287	2
scaffold_28	retained_intron	6926103	6926670	-	asmbl_38364	none	STRG.29766.1,Trinity_GG_16699_c0_g1_i2,blat.proc3825162.chain_2953	3	STRG.29766.3	1
scaffold_17	alt_donor	8567878	8567879	-	asmbl_18100	none	STRG.20469.1,blat.proc3825158.chain_1474	2	blat.proc3825158.chain_1475	1
scaffold_1	starts_in_intron	4573341	4573341	-	asmbl_209	none	blat.proc3825148.chain_157	1	STRG.285.1,STRG.285.5,blat.proc3825148.chain_155,blat.proc3825148.chain_159,blat.proc3825148.chain_160	5
scaffold_6	starts_in_intron	3813895	3813895	-	asmbl_48282	none	STRG.7384.2	1	STRG.7384.1,blat.proc3825150.chain_3464	2
scaffold_19	retained_intron	2649578	2649708	+	asmbl_21269	none	blat.proc3825174.chain_2990	1	STRG.21952.1,blat.proc3825174.chain_2989	2
scaffold_25	spliced_intron	9119958	9120031	+	asmbl_33787	none	STRG.27725.6	1	STRG.27725.4	1
scaffold_9	alt_donor	2823444	2823445	+	asmbl_53870	none	STRG.10917.1,Trinity_GG_23379_c0_g1_i1,blat.proc3825168.chain_3444	3	STRG.10917.2	1
scaffold_2	alt_acceptor	20441859	20441860	+	asmbl_25330	none	STRG.2885.1,Trinity_GG_18916_c0_g1_i1,blat.proc3825164.chain_3086	3	STRG.2885.2	1
scaffold_20	starts_in_intron	1574601	1574601	+	asmbl_26429	none	Trinity_GG_29891_c0_g1_i6,blat.proc3825176.chain_16	2	STRG.22885.1,STRG.22885.2,blat.proc3825176.chain_15	3
scaffold_3	alt_donor	4304779	4304780	-	asmbl_38799	none	STRG.3131.1	1	STRG.3131.2	1
scaffold_15	retained_intron	15355010	15355115	+	asmbl_15756,asmbl_15757,asmbl_15759	none	STRG.18922.1,Trinity_GG_27686_c0_g1_i4,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3564,blat.proc3825172.chain_3565	6	STRG.18922.3,Trinity_GG_27686_c0_g1_i7,blat.proc3825172.chain_3561,blat.proc3825172.chain_3563	4
scaffold_17	alt_donor	9088925	9088926	-	asmbl_18151	none	STRG.20538.4	1	STRG.20538.3,blat.proc3825158.chain_1560	2
scaffold_2	spliced_intron	6679470	6679625	-	asmbl_23220	none	STRG.2027.3,Trinity_GG_1126_c0_g1_i2,blat.proc3825148.chain_2027	3	STRG.2027.1,Trinity_GG_1126_c0_g1_i5,blat.proc3825148.chain_2028	3
scaffold_9	spliced_intron	17454872	17454904	+	asmbl_54632,asmbl_54633	none	STRG.11838.2,STRG.11838.3	2	STRG.11838.1,blat.proc3825170.chain_639	2
scaffold_7	retained_intron	8507767	8510079	+	asmbl_50004,asmbl_50005	none	STRG.9078.2,blat.proc3825168.chain_1605	2	STRG.9078.1,blat.proc3825168.chain_1604	2
scaffold_20	ends_in_intron	9984180	9984180	-	asmbl_26071	none	Trinity_GG_13123_c1_g1_i1	1	STRG.23541.1	1
scaffold_15	skipped_exon	3917413	3919012	+	asmbl_15115	none	STRG.18146.2	1	STRG.18146.1,Trinity_GG_27267_c1_g1_i1	2
scaffold_10	retained_intron	8917894	8918183	+	asmbl_3341	none	STRG.12642.1,blat.proc3825170.chain_1197	2	blat.proc3825170.chain_1196	1
scaffold_19	starts_in_intron	1106425	1106425	-	asmbl_22024,asmbl_22032	none	Trinity_GG_12207_c0_g1_i2,blat.proc3825158.chain_2732,blat.proc3825158.chain_2733	3	STRG.21903.1,STRG.21903.4,Trinity_GG_12207_c0_g2_i1,blat.proc3825158.chain_2735	4
scaffold_1	spliced_intron	7773078	7773240	+	asmbl_1917,asmbl_1918	none	blat.proc3825164.chain_694,blat.proc3825164.chain_695	2	STRG.537.2,blat.proc3825164.chain_696	2
scaffold_2	alt_donor	1594900	1594901	+	asmbl_24214	none	STRG.1627.2	1	STRG.1627.1,STRG.1627.3,STRG.1627.4,blat.proc3825164.chain_1823	4
scaffold_13	ends_in_intron	11633871	11633871	-	asmbl_10101	none	Trinity_GG_9137_c0_g1_i1,blat.proc3825156.chain_1167	2	STRG.16310.1,blat.proc3825156.chain_1165	2
scaffold_11	retained_intron	13384103	13384406	+	asmbl_6053,asmbl_6054,asmbl_6055	none	STRG.14203.1,STRG.14203.3,blat.proc3825170.chain_2761	3	STRG.14203.2,blat.proc3825170.chain_2760	2
scaffold_24	starts_in_intron	3759519	3759519	-	asmbl_32845	none	STRG.26576.2	1	STRG.26576.1,blat.proc3825160.chain_3684,blat.proc3825160.chain_3687	3
scaffold_22	spliced_intron	9340082	9340165	-	asmbl_29539	none	STRG.25279.3	1	STRG.25279.1,blat.proc3825160.chain_2434	2
scaffold_16	spliced_intron	6195012	6195163	+	asmbl_16292,asmbl_16293,asmbl_16294	none	STRG.19370.1,STRG.19370.2,blat.proc3825174.chain_258,blat.proc3825174.chain_260,blat.proc3825174.chain_261	5	blat.proc3825174.chain_257,blat.proc3825174.chain_259	2
scaffold_10	starts_in_intron	2729990	2729990	+	asmbl_3004	none	Trinity_GG_24044_c0_g1_i2,blat.proc3825170.chain_850	2	STRG.12091.1,blat.proc3825170.chain_849	2
scaffold_3	retained_intron	13647877	13648701	-	asmbl_39276	none	STRG.3709.1,Trinity_GG_2039_c0_g1_i2,blat.proc3825148.chain_3601	3	STRG.3709.2,Trinity_GG_2039_c0_g1_i1,blat.proc3825148.chain_3600	3
scaffold_13	retained_intron	4602269	4602712	-	asmbl_9639,asmbl_9649,asmbl_9652	none	STRG.15796.3,Trinity_GG_8874_c0_g1_i1,blat.proc3825156.chain_662,blat.proc3825156.chain_667,blat.proc3825156.chain_670	5	Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665	2
scaffold_6	spliced_intron	15762366	15762448	-	asmbl_49082,asmbl_49086	none	STRG.8318.1,STRG.8318.2,blat.proc3825152.chain_758	3	STRG.8318.3,blat.proc3825152.chain_757,blat.proc3825152.chain_759	3
scaffold_15	starts_in_intron	5418457	5418457	+	asmbl_15203	none	blat.proc3825172.chain_2873	1	STRG.18226.1	1
scaffold_5	retained_intron	18261385	18261769	+	asmbl_46242	none	STRG.6968.3	1	STRG.6968.1,STRG.6968.2,STRG.6968.4,blat.proc3825166.chain_3184,blat.proc3825166.chain_3187,blat.proc3825166.chain_3188,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	8
scaffold_24	skipped_exon	6290670	6292064	+	asmbl_32297	none	STRG.26684.1,blat.proc3825176.chain_3634	2	blat.proc3825176.chain_3635	1
scaffold_23	alt_acceptor	10893559	10893560	-	asmbl_31166	none	STRG.26289.1,blat.proc3825160.chain_3408	2	STRG.26289.2,STRG.26289.3,blat.proc3825160.chain_3409	3
scaffold_22	alternate_exon	8189900	8192811	-	asmbl_29455	none	STRG.25169.1,blat.proc3825160.chain_2321	2	STRG.25169.3	1
scaffold_9	starts_in_intron	9588189	9588189	-	asmbl_55204	none	blat.proc3825152.chain_3575	1	STRG.11326.1,blat.proc3825152.chain_3576	2
scaffold_2	retained_exon	9862236	9862331	-	asmbl_23396	none	STRG.2188.3	1	STRG.2188.2	1
scaffold_5	spliced_intron	12958540	12958648	-	asmbl_44505	none	STRG.6527.2	1	STRG.6527.1	1
scaffold_11	retained_exon	13578959	13579057	-	asmbl_7144,asmbl_7145	none	STRG.14217.2,blat.proc3825154.chain_2698	2	STRG.14217.1,STRG.14217.3,blat.proc3825154.chain_2696,blat.proc3825154.chain_2699	4
scaffold_23	starts_in_intron	10740363	10740363	-	asmbl_31154	none	STRG.26265.2	1	STRG.26265.1,blat.proc3825160.chain_3343,blat.proc3825160.chain_3344	3
scaffold_5	alt_donor	17226676	17226677	+	asmbl_46147,asmbl_46151	none	STRG.6896.1,blat.proc3825166.chain_3076,blat.proc3825166.chain_3077	3	STRG.6896.2	1
scaffold_18	skipped_exon	3915974	3917888	-	asmbl_19786	none	STRG.21203.3	1	STRG.21203.2,STRG.21203.4,STRG.21203.5,blat.proc3825158.chain_2160	4
scaffold_4	retained_intron	3237101	3237225	-	asmbl_42422	none	Trinity_GG_2372_c0_g1_i5,Trinity_GG_2372_c0_g1_i7,blat.proc3825150.chain_492,blat.proc3825150.chain_494	4	STRG.4249.1,STRG.4249.2,STRG.4249.3,STRG.4249.4,blat.proc3825150.chain_493	5
scaffold_8	starts_in_intron	14251983	14251983	+	asmbl_53364	none	Trinity_GG_23170_c0_g1_i2,blat.proc3825168.chain_3076	2	STRG.10524.1,blat.proc3825168.chain_3075	2
scaffold_26	retained_intron	5895307	5895541	-	asmbl_35638	none	STRG.28301.2,blat.proc3825162.chain_1472	2	STRG.28301.1,STRG.28301.3,blat.proc3825162.chain_1468,blat.proc3825162.chain_1473	4
scaffold_27	spliced_intron	2997750	2997932	+	asmbl_36156	none	STRG.28786.5	1	STRG.28786.4,blat.proc3825178.chain_1902,blat.proc3825178.chain_1903	3
scaffold_3	alt_donor	14186270	14186271	-	asmbl_39330,asmbl_39331	none	STRG.3761.2,STRG.3761.5,blat.proc3825148.chain_3666	3	blat.proc3825148.chain_3668	1
scaffold_19	starts_in_intron	12130308	12130308	+	asmbl_21754	none	Trinity_GG_29777_c0_g1_i2	1	STRG.22543.1,Trinity_GG_29777_c0_g1_i1,Trinity_GG_29777_c0_g1_i3,blat.proc3825174.chain_3552	4
scaffold_2	alt_acceptor	3708457	3708458	+	asmbl_24305	none	STRG.1800.1	1	STRG.1800.3	1
scaffold_5	retained_intron	9582795	9582912	-	asmbl_44292	none	blat.proc3825150.chain_2481	1	STRG.6280.1,blat.proc3825150.chain_2480	2
scaffold_22	alt_acceptor	7437508	7437509	-	asmbl_29400	none	STRG.25084.3,blat.proc3825160.chain_2247	2	STRG.25084.1,STRG.25084.2,STRG.25084.4,STRG.25084.5,blat.proc3825160.chain_2245,blat.proc3825160.chain_2246,blat.proc3825160.chain_2248	7
scaffold_17	spliced_intron	14874491	14874578	+	asmbl_19430	none	blat.proc3825174.chain_1841	1	STRG.20953.1	1
scaffold_6	retained_intron	18911268	18911384	-	asmbl_49286,asmbl_49288	none	STRG.8560.1,blat.proc3825152.chain_1010,blat.proc3825152.chain_1011	3	STRG.8560.2	1
scaffold_19	skipped_exon	12317345	12318253	+	asmbl_21776	none	STRG.22566.1,blat.proc3825174.chain_3584	2	STRG.22566.2,blat.proc3825174.chain_3583	2
scaffold_3	skipped_exon	16346254	16347398	-	asmbl_39499,asmbl_39501	none	STRG.3910.1,blat.proc3825150.chain_114,blat.proc3825150.chain_115	3	STRG.3910.3,Trinity_GG_2173_c1_g1_i1,Trinity_GG_2173_c2_g1_i2,blat.proc3825150.chain_118,blat.proc3825150.chain_120	5
scaffold_10	retained_intron	635222	635413	-	asmbl_3972,asmbl_3975,asmbl_3977	none	STRG.11945.3,STRG.11945.4,Trinity_GG_6642_c0_g1_i1,Trinity_GG_6642_c0_g1_i2,blat.proc3825154.chain_482,blat.proc3825154.chain_485	6	STRG.11945.2,blat.proc3825154.chain_483	2
scaffold_3	alternate_exon	6032281	6035682	-	asmbl_38878	none	STRG.3259.5,Trinity_GG_1777_c0_g2_i1,blat.proc3825148.chain_3160	3	STRG.3259.2,blat.proc3825148.chain_3152	2
scaffold_5	retained_intron	14569065	14569231	-	asmbl_44600	none	blat.proc3825150.chain_2783,blat.proc3825150.chain_2784	2	STRG.6658.1,blat.proc3825150.chain_2785	2
scaffold_13	retained_intron	8353056	8353540	+	asmbl_11128	none	blat.proc3825172.chain_917	1	STRG.16130.3	1
scaffold_6	retained_intron	10718997	10719099	+	asmbl_47289,asmbl_47290	none	STRG.7892.1,STRG.7892.3,blat.proc3825168.chain_334,blat.proc3825168.chain_335	4	STRG.7892.2,blat.proc3825168.chain_333	2
scaffold_15	alt_acceptor	4231386	4231387	+	asmbl_15128,asmbl_15131,asmbl_15133,asmbl_15134	none	STRG.18172.1,blat.proc3825172.chain_2837,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842	5	blat.proc3825172.chain_2836	1
scaffold_11	spliced_intron	1985555	1985593	+	asmbl_5350	none	STRG.13361.1	1	blat.proc3825154.chain_1937	1
scaffold_3	alternate_exon	1471712	1471886	+	asmbl_39849	none	Trinity_GG_18988_c0_g1_i2,blat.proc3825164.chain_3202	2	STRG.2967.1,Trinity_GG_18988_c0_g1_i3	2
scaffold_5	ends_in_intron	10652513	10652513	+	asmbl_45688	none	blat.proc3825166.chain_2565	1	STRG.6347.1,STRG.6347.2,blat.proc3825166.chain_2562	3
scaffold_2	retained_exon	6512443	6512496	-	asmbl_23211	none	STRG.2013.3	1	STRG.2013.1,STRG.2013.2,blat.proc3825148.chain_2016,blat.proc3825148.chain_2017	4
scaffold_10	spliced_intron	10283622	10283975	-	asmbl_4716	none	blat.proc3825154.chain_1348	1	STRG.12719.3,Trinity_GG_7121_c0_g1_i1,blat.proc3825154.chain_1346	3
scaffold_26	starts_in_intron	4803023	4803023	-	asmbl_35592	none	Trinity_GG_15793_c0_g1_i2,blat.proc3825162.chain_1456	2	STRG.28197.1	1
scaffold_18	retained_intron	1500051	1500145	+	asmbl_20355	none	Trinity_GG_28824_c0_g1_i2,blat.proc3825174.chain_1849	2	STRG.21034.1,Trinity_GG_28824_c0_g1_i1,blat.proc3825174.chain_1850,blat.proc3825174.chain_1851	4
scaffold_5	spliced_intron	12842254	12842348	+	asmbl_45825,asmbl_45826,asmbl_45828	none	STRG.6517.1,STRG.6517.3,Trinity_GG_20807_c0_g1_i1,blat.proc3825166.chain_2619,blat.proc3825166.chain_2620	5	STRG.6517.2,STRG.6517.4,Trinity_GG_20807_c0_g1_i2,blat.proc3825166.chain_2621	4
scaffold_4	retained_exon	16481102	16481130	-	asmbl_43180	none	blat.proc3825150.chain_1405	1	STRG.5225.1,STRG.5225.3,blat.proc3825150.chain_1403,blat.proc3825150.chain_1404	4
scaffold_7	alternate_exon	2705681	2705762	-	asmbl_50768	none	STRG.8697.1,blat.proc3825152.chain_1137	2	STRG.8697.2	1
scaffold_12	starts_in_intron	4982755	4982755	+	asmbl_7633	none	blat.proc3825170.chain_3134	1	STRG.14669.1,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3137,blat.proc3825170.chain_3139,blat.proc3825170.chain_3140,blat.proc3825170.chain_3141	7
scaffold_1	retained_exon	12463815	12463898	-	asmbl_720	none	STRG.867.1	1	STRG.867.2	1
scaffold_6	alternate_exon	11558596	11558781	-	asmbl_48761	none	STRG.7952.3,blat.proc3825152.chain_351	2	STRG.7952.1,blat.proc3825152.chain_350	2
scaffold_1	retained_intron	4389591	4389688	-	asmbl_190	none	Trinity_GG_132_c0_g1_i1,blat.proc3825148.chain_233	2	STRG.272.1,blat.proc3825148.chain_234	2
scaffold_1	alt_donor	18043900	18043901	-	asmbl_1084,asmbl_1085	none	STRG.1270.2,blat.proc3825148.chain_1266	2	STRG.1270.1,blat.proc3825148.chain_1265	2
scaffold_14	alternate_exon	6449859	6450069	-	asmbl_13136	none	Trinity_GG_9602_c0_g1_i3,blat.proc3825156.chain_1921	2	STRG.17095.2	1
scaffold_17	spliced_intron	14380546	14380566	+	asmbl_19401	none	STRG.20916.2	1	STRG.20916.1,blat.proc3825174.chain_1828	2
scaffold_9	retained_exon	9707001	9707334	+	asmbl_54237	none	STRG.11349.6	1	Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_146	2
scaffold_28	alternate_exon	1705882	1709950	-	asmbl_38011	none	STRG.29367.2	1	STRG.29367.3	1
scaffold_14	retained_intron	12351303	12351424	+	asmbl_12426	none	blat.proc3825172.chain_2272	1	STRG.17576.3,blat.proc3825172.chain_2274	2
scaffold_10	spliced_intron	8897211	8897475	-	asmbl_4621,asmbl_4633	none	blat.proc3825154.chain_1265,blat.proc3825154.chain_1268	2	Trinity_GG_7072_c0_g1_i21,blat.proc3825154.chain_1270	2
scaffold_15	retained_intron	15413654	15413826	+	asmbl_15776,asmbl_15777,asmbl_15778,asmbl_15779,asmbl_15782	none	STRG.18953.1,STRG.18953.2,STRG.18953.5,blat.proc3825172.chain_3607,blat.proc3825172.chain_3608,blat.proc3825172.chain_3611,blat.proc3825172.chain_3612	7	STRG.18953.3,STRG.18953.4,blat.proc3825172.chain_3610	3
scaffold_5	retained_intron	14022515	14022662	+	asmbl_45892	none	STRG.6610.1,Trinity_GG_20870_c0_g1_i1,blat.proc3825166.chain_2721	3	STRG.6610.2,Trinity_GG_20870_c0_g1_i2,blat.proc3825166.chain_2720	3
scaffold_13	alternate_exon	904335	912229	-	asmbl_9376,asmbl_9380,asmbl_9381,asmbl_9384,asmbl_9385	none	STRG.15470.1,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_271,blat.proc3825156.chain_272	9	STRG.15470.2,Trinity_GG_8651_c0_g1_i6,blat.proc3825156.chain_270	3
scaffold_27	alternate_exon	1972581	1972634	-	asmbl_36798	none	STRG.28678.3	1	STRG.28678.1,STRG.28678.2,blat.proc3825162.chain_1936	3
scaffold_3	ends_in_intron	10629347	10629347	+	asmbl_40287,asmbl_40288	none	blat.proc3825164.chain_3683,blat.proc3825164.chain_3685	2	STRG.3513.2,STRG.3513.5,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688	5
scaffold_7	skipped_exon	17609629	17611627	+	asmbl_50485	none	STRG.9612.1,blat.proc3825168.chain_2069	2	STRG.9612.2	1
scaffold_3	alt_acceptor	18937872	18937873	+	asmbl_40750,asmbl_40751,asmbl_40752	none	STRG.4067.1,STRG.4067.2,STRG.4067.4	3	STRG.4067.3	1
scaffold_14	alt_acceptor	404449	404450	+	asmbl_11749,asmbl_11752,asmbl_11753,asmbl_11756	none	STRG.16734.3,STRG.16734.5,Trinity_GG_26526_c0_g1_i24,Trinity_GG_26526_c0_g1_i4,blat.proc3825172.chain_1503,blat.proc3825172.chain_1506,blat.proc3825172.chain_1508,blat.proc3825172.chain_1515	8	STRG.16734.1,STRG.16734.2,STRG.16734.4,STRG.16734.6,Trinity_GG_26526_c0_g1_i18,blat.proc3825172.chain_1514	6
scaffold_15	alt_acceptor	15242410	15242411	-	asmbl_14763	none	STRG.18908.1,Trinity_GG_10627_c0_g1_i2,blat.proc3825158.chain_35	3	STRG.18908.2	1
scaffold_10	starts_in_intron	15423936	15423936	+	asmbl_3684	none	Trinity_GG_24505_c1_g1_i2	1	STRG.13059.1,blat.proc3825170.chain_1661	2
scaffold_8	retained_intron	16279130	16279219	+	asmbl_53445	none	Trinity_GG_23225_c0_g1_i1,blat.proc3825168.chain_3192	2	Trinity_GG_23225_c0_g1_i2,blat.proc3825168.chain_3191	2
scaffold_17	retained_exon	8355208	8355293	+	asmbl_18988	none	STRG.20457.2,blat.proc3825174.chain_1301	2	STRG.20457.1,Trinity_GG_28517_c0_g1_i1,blat.proc3825174.chain_1300	3
scaffold_14	retained_intron	12755086	12755745	-	asmbl_13595,asmbl_13602,asmbl_13603	none	STRG.17591.2,blat.proc3825156.chain_2474,blat.proc3825156.chain_2476	3	STRG.17591.1,blat.proc3825156.chain_2475	2
scaffold_7	spliced_intron	2589217	2589309	+	asmbl_49658	none	blat.proc3825168.chain_1142	1	STRG.8700.1	1
scaffold_6	ends_in_intron	9138949	9138949	+	asmbl_47215,asmbl_47216,asmbl_47218,asmbl_47219,asmbl_47220	none	STRG.7790.1,STRG.7790.2,STRG.7790.3,STRG.7790.5,blat.proc3825168.chain_218	5	STRG.7790.4,blat.proc3825168.chain_210,blat.proc3825168.chain_211,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_217,blat.proc3825168.chain_219	8
scaffold_20	alternate_exon	1132353	1132469	-	asmbl_25546	none	STRG.22832.1	1	STRG.22832.2,blat.proc3825158.chain_3637	2
scaffold_21	alt_acceptor	7445928	7445929	+	asmbl_28736,asmbl_28737	none	STRG.24275.1,blat.proc3825176.chain_1489,blat.proc3825176.chain_1490	3	STRG.24275.2	1
scaffold_2	alternate_exon	3745806	3745959	-	asmbl_22994	none	STRG.1805.2,blat.proc3825148.chain_1686	2	STRG.1805.1,blat.proc3825148.chain_1685	2
scaffold_5	alt_donor	5064080	5064081	-	asmbl_44026	none	STRG.5964.1,Trinity_GG_3315_c0_g1_i4,blat.proc3825150.chain_2090	3	STRG.5964.2,Trinity_GG_3315_c0_g1_i1,blat.proc3825150.chain_2089	3
scaffold_2	skipped_exon	16403257	16403585	+	asmbl_25139	none	blat.proc3825164.chain_2873	1	STRG.2582.1,blat.proc3825164.chain_2872	2
scaffold_24	skipped_exon	2519404	2521130	-	asmbl_32793	none	blat.proc3825160.chain_3607	1	STRG.26474.1,blat.proc3825160.chain_3606	2
scaffold_6	starts_in_intron	6870617	6870617	+	asmbl_47013	none	Trinity_GG_21407_c0_g1_i2,blat.proc3825166.chain_3677	2	STRG.7592.1,STRG.7592.2,STRG.7592.3,blat.proc3825166.chain_3678,blat.proc3825166.chain_3679,blat.proc3825166.chain_3680,blat.proc3825166.chain_3681	7
scaffold_1	alt_acceptor	20755377	20755378	+	asmbl_2650	none	STRG.1422.2,blat.proc3825164.chain_1495	2	blat.proc3825164.chain_1496	1
scaffold_24	alt_donor	4455336	4455337	+	asmbl_32200	none	STRG.26606.2,blat.proc3825176.chain_3500	2	blat.proc3825176.chain_3501	1
scaffold_19	retained_intron	11168790	11168935	+	asmbl_21671	none	blat.proc3825174.chain_3411	1	STRG.22450.1,blat.proc3825174.chain_3410	2
scaffold_14	starts_in_intron	12153923	12153923	+	asmbl_12416	none	Trinity_GG_26957_c0_g1_i3,blat.proc3825172.chain_2278	2	STRG.17548.1,blat.proc3825172.chain_2280	2
scaffold_1	retained_exon	18485992	18486046	-	asmbl_1111	none	blat.proc3825148.chain_1320	1	STRG.1298.2,STRG.1298.4,blat.proc3825148.chain_1322	3
scaffold_17	spliced_intron	2721370	2721870	+	asmbl_18693,asmbl_18694	none	STRG.20072.1,STRG.20072.2,Trinity_GG_28282_c0_g1_i2,blat.proc3825174.chain_904	4	STRG.20072.3,Trinity_GG_28282_c0_g1_i1,blat.proc3825174.chain_905	3
scaffold_19	alt_acceptor	729022	729023	+	asmbl_21204	none	STRG.21857.4	1	STRG.21857.1,STRG.21857.2,STRG.21857.3,blat.proc3825174.chain_2906	4
scaffold_9	retained_exon	644291	644460	+	asmbl_53784	none	STRG.10793.4	1	STRG.10793.2	1
scaffold_10	ends_in_intron	950907	950907	+	asmbl_2894	none	Trinity_GG_23961_c0_g1_i2,blat.proc3825170.chain_707	2	STRG.11975.1,Trinity_GG_23961_c0_g1_i1,Trinity_GG_23961_c0_g1_i4,blat.proc3825170.chain_706,blat.proc3825170.chain_708	5
scaffold_6	retained_intron	13984619	13985071	-	asmbl_48968,asmbl_48969	none	Trinity_GG_4653_c0_g2_i6,blat.proc3825152.chain_611,blat.proc3825152.chain_612,blat.proc3825152.chain_617	4	STRG.8159.1,blat.proc3825152.chain_614,blat.proc3825152.chain_615	3
scaffold_2	spliced_intron	6766622	6768034	+	asmbl_24490,asmbl_24494	none	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150	5	Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i6,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152,blat.proc3825164.chain_2153	6
scaffold_13	spliced_intron	3734461	3734554	+	asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737	none	STRG.15695.1,STRG.15695.2,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_448	5	STRG.15695.3,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_444	3
scaffold_16	retained_intron	11303194	11303588	+	asmbl_16573	none	STRG.19659.1,Trinity_GG_28093_c1_g1_i1,blat.proc3825174.chain_597,blat.proc3825174.chain_598	4	STRG.19659.2,Trinity_GG_28093_c1_g1_i3,blat.proc3825174.chain_599	3
scaffold_13	alt_donor	6415682	6415683	+	asmbl_10934	none	STRG.15931.1	1	STRG.15931.2	1
scaffold_27	spliced_intron	6782117	6782250	-	asmbl_37082	none	STRG.29050.3,blat.proc3825162.chain_2278	2	STRG.29050.4,blat.proc3825162.chain_2280	2
scaffold_10	alt_acceptor	13458298	13458299	-	asmbl_4880	none	STRG.12936.1,blat.proc3825154.chain_1526	2	STRG.12936.3	1
scaffold_8	starts_in_intron	9868030	9868030	+	asmbl_53122,asmbl_53123	none	STRG.10233.5,STRG.10233.6	2	STRG.10233.2,blat.proc3825168.chain_2817,blat.proc3825168.chain_2818,blat.proc3825168.chain_2819,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	6
scaffold_7	alt_acceptor	7615053	7615054	-	asmbl_50950,asmbl_50953	none	STRG.9014.1,STRG.9014.2,Trinity_GG_5063_c0_g1_i2,blat.proc3825152.chain_1351	4	STRG.9014.3,STRG.9014.4,Trinity_GG_5063_c0_g1_i1,blat.proc3825152.chain_1352	4
scaffold_14	alt_acceptor	561569	561570	+	asmbl_11760	none	STRG.16738.2	1	STRG.16738.1,Trinity_GG_26523_c0_g1_i3,Trinity_GG_26523_c1_g1_i1,blat.proc3825172.chain_1496,blat.proc3825172.chain_1498	5
scaffold_4	retained_exon	13876609	13876629	-	asmbl_43019	none	blat.proc3825150.chain_1180	1	STRG.5016.1,blat.proc3825150.chain_1179	2
scaffold_19	starts_in_intron	13007319	13007319	+	asmbl_21838,asmbl_21839	none	Trinity_GG_29821_c0_g1_i14,Trinity_GG_29821_c0_g1_i3,blat.proc3825174.chain_3648,blat.proc3825174.chain_3652	4	STRG.22623.1,STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i10,Trinity_GG_29821_c0_g1_i11,Trinity_GG_29821_c0_g1_i5,Trinity_GG_29821_c0_g1_i6,Trinity_GG_29821_c0_g1_i8,blat.proc3825174.chain_3643,blat.proc3825174.chain_3644,blat.proc3825174.chain_3645,blat.proc3825174.chain_3646,blat.proc3825174.chain_3649,blat.proc3825174.chain_3650	14
scaffold_20	alt_acceptor	2064116	2064117	+	asmbl_26463	none	STRG.22941.1	1	STRG.22941.2	1
scaffold_4	ends_in_intron	16479202	16479202	-	asmbl_43181	none	Trinity_GG_2926_c0_g2_i1	1	STRG.5225.1,STRG.5225.2,STRG.5225.3,blat.proc3825150.chain_1403,blat.proc3825150.chain_1404,blat.proc3825150.chain_1405,blat.proc3825150.chain_1406	7
scaffold_20	alternate_exon	8343716	8343807	-	asmbl_25978,asmbl_25980,asmbl_25985	none	STRG.23378.1,Trinity_GG_13065_c0_g1_i10,blat.proc3825160.chain_509,blat.proc3825160.chain_511,blat.proc3825160.chain_512	5	STRG.23378.3,blat.proc3825160.chain_507,blat.proc3825160.chain_508	3
scaffold_4	alt_acceptor	17631820	17631821	-	asmbl_43293	none	STRG.5356.2	1	STRG.5356.1,STRG.5356.3,blat.proc3825150.chain_1527	3
scaffold_16	alt_donor	574048	574049	-	asmbl_16888	none	STRG.19036.1	1	STRG.19036.2,blat.proc3825158.chain_127	2
scaffold_10	spliced_intron	7278809	7278908	-	asmbl_4538,asmbl_4540	none	STRG.12543.1,blat.proc3825154.chain_1098	2	blat.proc3825154.chain_1100	1
scaffold_2	alt_acceptor	3771268	3771269	+	asmbl_24313	none	blat.proc3825164.chain_1957	1	STRG.1810.1	1
scaffold_14	skipped_exon	15584170	15585856	+	asmbl_12634	none	blat.proc3825172.chain_2556	1	STRG.17811.1,STRG.17811.2,STRG.17811.3,STRG.17811.5,STRG.17811.6,STRG.17811.7,blat.proc3825172.chain_2554	7
scaffold_12	alt_donor	9931029	9931030	+	asmbl_7895	none	STRG.14964.2,blat.proc3825170.chain_3446	2	STRG.14964.1,blat.proc3825170.chain_3445	2
scaffold_16	alternate_exon	6147933	6151128	+	asmbl_16279,asmbl_16280,asmbl_16283	none	STRG.19354.1,blat.proc3825174.chain_141,blat.proc3825174.chain_144	3	STRG.19354.2,STRG.19354.3,blat.proc3825174.chain_143	3
scaffold_12	alt_acceptor	6426744	6426745	-	asmbl_8533,asmbl_8534,asmbl_8535	none	STRG.14754.1,STRG.14754.2,STRG.14754.3,blat.proc3825154.chain_3270,blat.proc3825154.chain_3271,blat.proc3825154.chain_3272	6	Trinity_GG_8239_c1_g1_i1,blat.proc3825154.chain_3273	2
scaffold_18	ends_in_intron	3607909	3607909	+	asmbl_20459,asmbl_20462,asmbl_20463	none	STRG.21178.1,STRG.21178.3,STRG.21178.4,blat.proc3825174.chain_2119	4	STRG.21178.2	1
scaffold_15	alt_donor	5345856	5345857	+	asmbl_15200	none	STRG.18229.1,blat.proc3825172.chain_2846	2	STRG.18229.2,blat.proc3825172.chain_2845	2
scaffold_13	ends_in_intron	15374252	15374252	+	asmbl_11502	none	STRG.16584.2	1	STRG.16584.1,STRG.16584.3	2
scaffold_1	spliced_intron	10950202	10950931	+	asmbl_2038	none	STRG.715.3,blat.proc3825164.chain_864	2	STRG.715.2,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_862	6
scaffold_6	retained_exon	12092341	12092391	-	asmbl_48797	none	STRG.7984.2	1	STRG.7984.1,blat.proc3825152.chain_368	2
scaffold_25	retained_intron	6302876	6303091	+	asmbl_33614	none	blat.proc3825178.chain_557	1	STRG.27515.1,STRG.27515.2,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	7
scaffold_11	starts_in_intron	3709662	3709662	-	asmbl_6561	none	blat.proc3825154.chain_2046	1	Trinity_GG_7547_c1_g1_i2,blat.proc3825154.chain_2045	2
scaffold_7	skipped_exon	8186128	8187038	+	asmbl_49963	none	STRG.9051.1,blat.proc3825168.chain_1530	2	STRG.9051.2,blat.proc3825168.chain_1529	2
scaffold_11	retained_intron	8478872	8479288	+	asmbl_5788	none	STRG.13864.3,blat.proc3825170.chain_2289	2	STRG.13864.1,Trinity_GG_24888_c0_g1_i2,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2291,blat.proc3825170.chain_2293	5
scaffold_25	alternate_exon	431030	433816	+	asmbl_33332	none	STRG.27088.1,blat.proc3825178.chain_280	2	Trinity_GG_32275_c0_g1_i2,blat.proc3825178.chain_281	2
scaffold_20	starts_in_intron	9620861	9620861	-	asmbl_26046	none	blat.proc3825160.chain_578	1	STRG.23500.1,blat.proc3825160.chain_579	2
scaffold_22	alt_donor	230274	230275	-	asmbl_29074,asmbl_29075,asmbl_29076,asmbl_29078,asmbl_29080,asmbl_29081,asmbl_29082	none	STRG.24683.1,STRG.24683.2,STRG.24683.3,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1904,blat.proc3825160.chain_1905,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	9	STRG.24683.5	1
scaffold_2	retained_intron	16860835	16861118	+	asmbl_25151	none	blat.proc3825164.chain_2900	1	STRG.2602.1,STRG.2602.2,blat.proc3825164.chain_2898,blat.proc3825164.chain_2902	4
scaffold_22	alt_donor	719943	719944	-	asmbl_29120	none	STRG.24723.1,Trinity_GG_13821_c0_g1_i1,blat.proc3825160.chain_1918	3	STRG.24723.2,Trinity_GG_13821_c0_g1_i2,blat.proc3825160.chain_1917	3
scaffold_18	retained_exon	11912892	11912993	+	asmbl_20955	none	STRG.21695.2,blat.proc3825174.chain_2722	2	STRG.21695.1	1
scaffold_25	ends_in_intron	6304659	6304659	+	asmbl_33611	none	blat.proc3825178.chain_554	1	STRG.27515.1,STRG.27515.2,Trinity_GG_32442_c0_g1_i14,blat.proc3825178.chain_553,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_557,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	10
scaffold_8	starts_in_intron	16401126	16401126	-	asmbl_52393	none	blat.proc3825152.chain_2847	1	STRG.10626.1,STRG.10626.2,STRG.10626.3,STRG.10626.4,blat.proc3825152.chain_2845,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2849,blat.proc3825152.chain_2851,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	11
scaffold_28	starts_in_intron	7261302	7261302	+	asmbl_37662	none	Trinity_GG_33823_c0_g1_i2,blat.proc3825178.chain_2965	2	STRG.29794.1,blat.proc3825178.chain_2966	2
scaffold_12	retained_exon	2669663	2669772	+	asmbl_7514	none	STRG.14514.1	1	STRG.14514.2	1
scaffold_16	alt_acceptor	2173337	2173338	+	asmbl_16116	none	blat.proc3825172.chain_3727	1	STRG.19116.2,blat.proc3825172.chain_3725	2
scaffold_16	retained_exon	433713	433762	-	asmbl_16875,asmbl_16879	none	STRG.19041.2,blat.proc3825158.chain_201	2	STRG.19041.1,blat.proc3825158.chain_196,blat.proc3825158.chain_203	3
scaffold_7	retained_intron	5928824	5929865	+	asmbl_49829,asmbl_49830	none	STRG.8902.1,STRG.8902.4,Trinity_GG_22209_c0_g1_i3,blat.proc3825168.chain_1373	4	STRG.8902.3,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1375	3
scaffold_14	ends_in_intron	8401484	8401484	-	asmbl_13305	none	Trinity_GG_9689_c0_g1_i2,blat.proc3825156.chain_2086	2	STRG.17279.2,blat.proc3825156.chain_2087,blat.proc3825156.chain_2088	3
scaffold_14	alt_acceptor	12626474	12626475	-	asmbl_13579,asmbl_13580,asmbl_13581,asmbl_13582,asmbl_13583,asmbl_13584	none	STRG.17582.1,STRG.17582.2,STRG.17582.3,STRG.17582.4,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	9	blat.proc3825156.chain_2423	1
scaffold_16	retained_exon	14191268	14191387	-	asmbl_17438,asmbl_17439	none	STRG.19820.2,STRG.19820.3,blat.proc3825158.chain_848,blat.proc3825158.chain_849	4	STRG.19820.1,blat.proc3825158.chain_850	2
scaffold_13	alt_donor	11585750	11585751	+	asmbl_11289,asmbl_11291,asmbl_11292,asmbl_11293,asmbl_11294,asmbl_11295,asmbl_11296,asmbl_11297,asmbl_11298	none	STRG.16316.1,STRG.16316.3,blat.proc3825172.chain_1028,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	9	STRG.16316.4,STRG.16316.5	2
scaffold_11	alt_donor	6574182	6574183	-	asmbl_6722	none	STRG.13700.1,blat.proc3825154.chain_2276	2	STRG.13700.2	1
scaffold_24	retained_intron	8736275	8736426	-	asmbl_33096	none	Trinity_GG_15007_c0_g1_i6,blat.proc3825162.chain_185	2	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_184	4
scaffold_15	retained_intron	15857347	15857984	+	asmbl_15824,asmbl_15826	none	Trinity_GG_27688_c0_g1_i10,blat.proc3825172.chain_3573,blat.proc3825172.chain_3578	3	STRG.18973.3,Trinity_GG_27688_c0_g1_i12,blat.proc3825172.chain_3569	3
scaffold_15	spliced_intron	11402046	11402524	-	asmbl_14493	none	STRG.18606.5,blat.proc3825156.chain_3363	2	STRG.18606.2,blat.proc3825156.chain_3365	2
scaffold_11	alt_acceptor	11644975	11644976	+	asmbl_5991	none	blat.proc3825170.chain_2611	1	STRG.14094.1,blat.proc3825170.chain_2610	2
scaffold_6	retained_intron	15087115	15087248	-	asmbl_49047	none	Trinity_GG_4678_c0_g1_i4,blat.proc3825152.chain_663	2	STRG.8272.1,Trinity_GG_4678_c0_g1_i1,blat.proc3825152.chain_664,blat.proc3825152.chain_665	4
scaffold_2	ends_in_intron	14562664	14562664	+	asmbl_24956,asmbl_24960	none	blat.proc3825164.chain_2658,blat.proc3825164.chain_2663	2	STRG.2464.1,STRG.2464.2,STRG.2464.3,Trinity_GG_18675_c0_g1_i6,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2657,blat.proc3825164.chain_2660,blat.proc3825164.chain_2662,blat.proc3825164.chain_2665	10
scaffold_15	retained_exon	10880031	10880144	-	asmbl_14460	none	STRG.18571.1,blat.proc3825156.chain_3423	2	STRG.18571.3	1
scaffold_7	skipped_exon	4930791	4933374	+	asmbl_49772,asmbl_49774,asmbl_49775,asmbl_49776,asmbl_49778	none	STRG.8852.1,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1348,blat.proc3825168.chain_1352	6	STRG.8852.2,blat.proc3825168.chain_1347	2
scaffold_14	alternate_exon	16056194	16058665	+	asmbl_12666	none	STRG.17848.1,Trinity_GG_27118_c0_g1_i1,Trinity_GG_27118_c0_g1_i2,blat.proc3825172.chain_2569,blat.proc3825172.chain_2570,blat.proc3825172.chain_2571	6	blat.proc3825172.chain_2572	1
scaffold_14	starts_in_intron	3163803	3163803	+	asmbl_11909	none	STRG.16908.5	1	STRG.16908.1,STRG.16908.3,STRG.16908.4,blat.proc3825172.chain_1612,blat.proc3825172.chain_1613,blat.proc3825172.chain_1614	6
scaffold_2	retained_intron	14021578	14021829	+	asmbl_24869	none	blat.proc3825164.chain_2575	1	STRG.2398.2	1
scaffold_24	alt_donor	5883550	5883551	-	asmbl_32908,asmbl_32909,asmbl_32910	none	STRG.26654.1,STRG.26654.3,blat.proc3825162.chain_34,blat.proc3825162.chain_35,blat.proc3825162.chain_36	5	STRG.26654.2,blat.proc3825162.chain_37	2
scaffold_20	alternate_exon	5954211	5954528	-	asmbl_25807	none	STRG.23205.2,blat.proc3825160.chain_289	2	STRG.23205.1,blat.proc3825160.chain_293	2
scaffold_5	alt_donor	7408039	7408040	-	asmbl_44175,asmbl_44176	none	STRG.6142.1,STRG.6142.2	2	STRG.6142.3	1
scaffold_25	ends_in_intron	9940483	9940483	-	asmbl_34532	none	Trinity_GG_15596_c0_g1_i10,blat.proc3825162.chain_1152	2	STRG.27806.1,blat.proc3825162.chain_1157	2
scaffold_9	alt_donor	14818072	14818073	-	asmbl_55498	none	STRG.11702.1,blat.proc3825154.chain_160	2	STRG.11702.2,STRG.11702.4,STRG.11702.6,blat.proc3825154.chain_159,blat.proc3825154.chain_163	5
scaffold_21	ends_in_intron	273106	273106	+	asmbl_28256	none	Trinity_GG_30451_c0_g1_i2,blat.proc3825176.chain_932	2	STRG.23726.1,Trinity_GG_30451_c0_g1_i1,blat.proc3825176.chain_933	3
scaffold_9	alternate_exon	16555277	16555306	-	asmbl_55579	none	blat.proc3825154.chain_252	1	STRG.11790.1,blat.proc3825154.chain_253	2
scaffold_2	starts_in_intron	2599259	2599259	-	asmbl_22909	none	STRG.1708.2,blat.proc3825148.chain_1639	2	STRG.1708.1,Trinity_GG_915_c0_g1_i2,blat.proc3825148.chain_1640	3
scaffold_19	alt_donor	12580922	12580923	-	asmbl_22523	none	STRG.22585.1	1	STRG.22585.2	1
scaffold_25	alt_acceptor	9120104	9120105	+	asmbl_33783	none	STRG.27725.3	1	STRG.27725.4,STRG.27725.5,STRG.27725.6	3
scaffold_13	alternate_exon	7527864	7528766	-	asmbl_9898	none	STRG.16048.2,Trinity_GG_9022_c0_g1_i4,blat.proc3825156.chain_947	3	STRG.16048.3,Trinity_GG_9022_c0_g1_i3,blat.proc3825156.chain_945	3
scaffold_25	starts_in_intron	5055252	5055252	+	asmbl_33560	none	blat.proc3825178.chain_508	1	STRG.27435.1,STRG.27435.2,blat.proc3825178.chain_506,blat.proc3825178.chain_507	4
scaffold_24	skipped_exon	6832860	6834175	+	asmbl_32346,asmbl_32353	none	STRG.26736.2,blat.proc3825176.chain_3732,blat.proc3825176.chain_3734	3	STRG.26736.1,STRG.26736.4,blat.proc3825176.chain_3729	3
scaffold_8	starts_in_intron	9104253	9104253	-	asmbl_51998	none	blat.proc3825152.chain_2434	1	STRG.10165.1,blat.proc3825152.chain_2435	2
scaffold_22	retained_intron	484303	485440	+	asmbl_29855	none	blat.proc3825176.chain_1750	1	STRG.24694.1,Trinity_GG_30924_c0_g1_i3,blat.proc3825176.chain_1751	3
scaffold_10	alternate_exon	9336353	9337697	+	asmbl_3369	none	STRG.12665.1,Trinity_GG_24288_c0_g1_i1	2	STRG.12665.2	1
scaffold_17	starts_in_intron	1511425	1511425	-	asmbl_17721	none	blat.proc3825158.chain_1058	1	STRG.19991.1,STRG.19991.2,blat.proc3825158.chain_1056,blat.proc3825158.chain_1057,blat.proc3825158.chain_1059	5
scaffold_6	alt_acceptor	13132750	13132751	-	asmbl_48880	none	STRG.8070.1,blat.proc3825152.chain_458	2	STRG.8070.2,Trinity_GG_4584_c0_g1_i2,blat.proc3825152.chain_460	3
scaffold_23	retained_intron	2992336	2992464	-	asmbl_30773	none	STRG.25748.4	1	STRG.25748.3	1
scaffold_4	retained_intron	4912273	4912392	+	asmbl_41313,asmbl_41316	none	STRG.4387.1,Trinity_GG_19752_c0_g1_i3,blat.proc3825166.chain_864,blat.proc3825166.chain_866	4	STRG.4387.2,blat.proc3825166.chain_862	2
scaffold_1	spliced_intron	9516100	9516390	-	asmbl_539,asmbl_542	none	STRG.637.1,STRG.637.3,blat.proc3825148.chain_630	3	STRG.637.2,blat.proc3825148.chain_627,blat.proc3825148.chain_628	3
scaffold_13	alt_acceptor	11852931	11852932	+	asmbl_11311	none	STRG.16321.1,blat.proc3825172.chain_1120	2	STRG.16321.2	1
scaffold_4	spliced_intron	18348146	18348526	+	asmbl_42098	none	STRG.5441.1,blat.proc3825166.chain_1751	2	STRG.5441.2,blat.proc3825166.chain_1752	2
scaffold_2	alt_acceptor	8566862	8566863	+	asmbl_24641	none	STRG.2126.1,Trinity_GG_18515_c0_g1_i1,blat.proc3825164.chain_2317	3	STRG.2126.2,Trinity_GG_18515_c0_g1_i2,blat.proc3825164.chain_2318	3
scaffold_13	starts_in_intron	4078248	4078248	+	asmbl_10760	none	blat.proc3825172.chain_477	1	STRG.15733.1,blat.proc3825172.chain_478	2
scaffold_28	alt_acceptor	5581920	5581921	+	asmbl_37591	none	STRG.29692.2,Trinity_GG_33772_c0_g1_i2,blat.proc3825178.chain_2876	3	STRG.29692.1,Trinity_GG_33772_c0_g1_i4,Trinity_GG_33772_c0_g1_i5,blat.proc3825178.chain_2878,blat.proc3825178.chain_2879	5
scaffold_2	spliced_intron	9262531	9262914	-	asmbl_23372	none	STRG.2169.2,blat.proc3825148.chain_2192	2	STRG.2169.1,STRG.2169.3,blat.proc3825148.chain_2191	3
scaffold_13	starts_in_intron	3100037	3100037	-	asmbl_9519	none	Trinity_GG_8770_c0_g1_i1,blat.proc3825156.chain_510	2	STRG.15620.1,blat.proc3825156.chain_509	2
scaffold_9	spliced_intron	16570389	16570696	+	asmbl_54597,asmbl_54604	none	STRG.11807.1,Trinity_GG_23904_c0_g1_i14,blat.proc3825170.chain_611,blat.proc3825170.chain_615	4	STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i19,Trinity_GG_23904_c0_g1_i21,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_610,blat.proc3825170.chain_612,blat.proc3825170.chain_613,blat.proc3825170.chain_614,blat.proc3825170.chain_616,blat.proc3825170.chain_617	13
scaffold_13	retained_intron	2570778	2570949	+	asmbl_10623,asmbl_10627	none	STRG.15563.2,Trinity_GG_25871_c0_g1_i4,blat.proc3825172.chain_323,blat.proc3825172.chain_326	4	STRG.15563.1,STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_327	8
scaffold_7	skipped_exon	5482741	5484064	+	asmbl_49813	none	STRG.8877.1,blat.proc3825168.chain_1357	2	STRG.8877.2	1
scaffold_1	retained_intron	15888367	15889037	+	asmbl_2456	none	STRG.1119.2,blat.proc3825164.chain_1260	2	Trinity_GG_17960_c0_g1_i3,blat.proc3825164.chain_1261	2
scaffold_15	spliced_intron	9873560	9873882	+	asmbl_15425,asmbl_15428,asmbl_15431	none	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3108,blat.proc3825172.chain_3110	4	blat.proc3825172.chain_3109	1
scaffold_9	alt_donor	9688646	9688647	-	asmbl_55234,asmbl_55235	none	STRG.11346.1,STRG.11346.2,blat.proc3825152.chain_3613,blat.proc3825152.chain_3614	4	STRG.11346.3	1
scaffold_10	spliced_intron	10801165	10801378	+	asmbl_3436,asmbl_3438	none	STRG.12766.1,blat.proc3825170.chain_1372,blat.proc3825170.chain_1373,blat.proc3825170.chain_1374	4	STRG.12766.2	1
scaffold_13	spliced_intron	3529936	3530025	+	asmbl_10701,asmbl_10702,asmbl_10703,asmbl_10704,asmbl_10705	none	STRG.15676.1,STRG.15676.2,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_363,blat.proc3825172.chain_364	6	blat.proc3825172.chain_360	1
scaffold_3	alt_acceptor	16072141	16072142	+	asmbl_40607	none	STRG.3889.3	1	STRG.3889.1,STRG.3889.2,blat.proc3825166.chain_374,blat.proc3825166.chain_375,blat.proc3825166.chain_376	5
scaffold_5	retained_exon	18328102	18328179	+	asmbl_46250	none	STRG.6965.1,blat.proc3825166.chain_3169	2	STRG.6965.2	1
scaffold_5	ends_in_intron	1383542	1383542	+	asmbl_45124	none	STRG.5702.1	1	STRG.5702.2	1
scaffold_24	starts_in_intron	9082636	9082636	+	asmbl_32492	none	Trinity_GG_32214_c0_g1_i7,blat.proc3825178.chain_145	2	STRG.26950.1,STRG.26950.2,STRG.26950.3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i6,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_146,blat.proc3825178.chain_147,blat.proc3825178.chain_148,blat.proc3825178.chain_150,blat.proc3825178.chain_151	11
scaffold_6	retained_intron	13167852	13167977	-	asmbl_48883,asmbl_48889	none	STRG.8074.2,blat.proc3825152.chain_476,blat.proc3825152.chain_477	3	STRG.8074.1,blat.proc3825152.chain_472,blat.proc3825152.chain_478	3
scaffold_28	spliced_intron	5358747	5358813	-	asmbl_38286	none	STRG.29684.1,blat.proc3825162.chain_2873	2	STRG.29684.2	1
scaffold_7	starts_in_intron	6036034	6036034	+	asmbl_49838	none	blat.proc3825168.chain_1382	1	STRG.8909.1,Trinity_GG_22211_c0_g1_i1,Trinity_GG_22211_c0_g1_i3,blat.proc3825168.chain_1380,blat.proc3825168.chain_1381	5
scaffold_7	ends_in_intron	4874182	4874182	+	asmbl_49750	none	blat.proc3825168.chain_1294	1	blat.proc3825168.chain_1295	1
scaffold_13	alt_donor	16183483	16183484	-	asmbl_10275	none	STRG.16664.2,blat.proc3825156.chain_1425	2	STRG.16664.1,blat.proc3825156.chain_1422,blat.proc3825156.chain_1424	3
scaffold_12	alt_acceptor	9646728	9646729	-	asmbl_8684	none	STRG.14942.1,blat.proc3825154.chain_3459	2	STRG.14942.2	1
scaffold_13	spliced_intron	2653329	2653423	-	asmbl_9468	none	Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_380	2	blat.proc3825156.chain_379	1
scaffold_4	retained_intron	12374031	12374180	-	asmbl_42907	none	blat.proc3825150.chain_1069	1	STRG.4872.1,blat.proc3825150.chain_1070	2
scaffold_2	alt_acceptor	15490648	15490649	+	asmbl_25052,asmbl_25053,asmbl_25054,asmbl_25056	none	STRG.2506.1,STRG.2506.2,STRG.2506.4,blat.proc3825164.chain_2791,blat.proc3825164.chain_2792,blat.proc3825164.chain_2793	6	STRG.2506.3,blat.proc3825164.chain_2794	2
scaffold_17	starts_in_intron	11258292	11258292	+	asmbl_19209	none	STRG.20681.2	1	STRG.20681.1	1
scaffold_15	skipped_exon	11142283	11144388	-	asmbl_14485,asmbl_14486	none	blat.proc3825156.chain_3383,blat.proc3825156.chain_3384	2	blat.proc3825156.chain_3382,blat.proc3825156.chain_3386	2
scaffold_12	spliced_intron	4721064	4721689	-	asmbl_8431,asmbl_8432,asmbl_8436	none	STRG.14649.2,STRG.14649.3,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	5	STRG.14649.1,blat.proc3825154.chain_3100	2
scaffold_11	starts_in_intron	9833418	9833418	+	asmbl_5912	none	Trinity_GG_25038_c0_g1_i7,blat.proc3825170.chain_2562	2	STRG.14008.1,STRG.14008.2,STRG.14008.4,STRG.14008.5,blat.proc3825170.chain_2556,blat.proc3825170.chain_2557,blat.proc3825170.chain_2559,blat.proc3825170.chain_2564,blat.proc3825170.chain_2565	9
scaffold_14	retained_intron	8212830	8213288	-	asmbl_13256	none	blat.proc3825156.chain_2057	1	STRG.17234.1,STRG.17234.2,STRG.17234.3,STRG.17234.4,STRG.17234.5,blat.proc3825156.chain_2055,blat.proc3825156.chain_2056,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	9
scaffold_11	spliced_intron	10398841	10399063	+	asmbl_5939,asmbl_5940	none	STRG.14049.1,blat.proc3825170.chain_2496,blat.proc3825170.chain_2498	3	blat.proc3825170.chain_2499	1
scaffold_11	alt_donor	5007654	5007655	+	asmbl_5538	none	STRG.13591.1	1	STRG.13591.2,blat.proc3825170.chain_2133	2
scaffold_21	ends_in_intron	3164139	3164139	+	asmbl_28465	none	STRG.23959.6	1	STRG.23959.3,STRG.23959.4,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1139	5
scaffold_16	retained_intron	7540673	7540805	-	asmbl_17182	none	blat.proc3825158.chain_538	1	STRG.19413.1,blat.proc3825158.chain_539	2
scaffold_25	ends_in_intron	3612281	3612281	-	asmbl_34143	none	blat.proc3825162.chain_672	1	STRG.27305.1,STRG.27305.2,blat.proc3825162.chain_671	3
scaffold_6	skipped_exon	4931559	4933652	-	asmbl_48370	none	STRG.7468.2,blat.proc3825150.chain_3593	2	STRG.7468.1,blat.proc3825150.chain_3591	2
scaffold_17	spliced_intron	10838527	10838830	-	asmbl_18251	none	blat.proc3825158.chain_1686	1	blat.proc3825158.chain_1685	1
scaffold_7	retained_exon	1231348	1231431	+	asmbl_49594,asmbl_49600,asmbl_49602,asmbl_49603,asmbl_49605,asmbl_49606,asmbl_49607	none	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	8	STRG.8637.7,Trinity_GG_22033_c0_g1_i16,blat.proc3825168.chain_1080	3
scaffold_18	spliced_intron	5584921	5585267	-	asmbl_19863,asmbl_19864	none	STRG.21314.1,STRG.21314.2,blat.proc3825158.chain_2270	3	blat.proc3825158.chain_2238,blat.proc3825158.chain_2269,blat.proc3825158.chain_2271	3
scaffold_3	spliced_intron	14048563	14048700	+	asmbl_40499	none	STRG.3748.1	1	STRG.3748.2,blat.proc3825166.chain_244	2
scaffold_1	spliced_intron	8645316	8645414	-	asmbl_466,asmbl_468,asmbl_469,asmbl_471	none	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_584,blat.proc3825148.chain_585	5	blat.proc3825148.chain_581,blat.proc3825148.chain_586	2
scaffold_3	ends_in_intron	19883375	19883375	-	asmbl_39670,asmbl_39672,asmbl_39673	none	Trinity_GG_2243_c0_g1_i3,blat.proc3825150.chain_243	2	STRG.4100.1,STRG.4100.3,STRG.4100.4,blat.proc3825150.chain_242	4
scaffold_14	retained_intron	15347218	15347549	-	asmbl_13717	none	blat.proc3825156.chain_2611	1	STRG.17765.1,STRG.17765.2,STRG.17765.3,Trinity_GG_9998_c0_g1_i4,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2605,blat.proc3825156.chain_2607,blat.proc3825156.chain_2608,blat.proc3825156.chain_2610	9
scaffold_18	alt_donor	2834262	2834263	+	asmbl_20424	none	STRG.21142.4,blat.proc3825174.chain_2046	2	STRG.21142.5,blat.proc3825174.chain_2048	2
scaffold_3	alt_acceptor	12670605	12670606	-	asmbl_39223	none	STRG.3663.2	1	STRG.3663.1,blat.proc3825148.chain_3516	2
scaffold_5	spliced_intron	1548461	1548523	-	asmbl_43860	none	STRG.5712.2	1	Trinity_GG_3178_c0_g1_i2,blat.proc3825150.chain_1853	2
scaffold_1	retained_exon	11620012	11620143	-	asmbl_643	none	STRG.770.1,blat.proc3825148.chain_659	2	STRG.770.2,blat.proc3825148.chain_660	2
scaffold_4	retained_intron	5183708	5183825	-	asmbl_42561	none	STRG.4410.4,Trinity_GG_2468_c0_g1_i3,blat.proc3825150.chain_642	3	STRG.4410.1,STRG.4410.2,STRG.4410.3,blat.proc3825150.chain_643,blat.proc3825150.chain_644	5
scaffold_27	retained_intron	927062	927428	-	asmbl_36714	none	STRG.28587.2,Trinity_GG_15981_c0_g1_i3,blat.proc3825162.chain_1790	3	STRG.28587.1,Trinity_GG_15981_c0_g1_i1,Trinity_GG_15981_c0_g1_i5,blat.proc3825162.chain_1791,blat.proc3825162.chain_1792	5
scaffold_23	ends_in_intron	9887514	9887514	+	asmbl_31804	none	STRG.26189.1,blat.proc3825176.chain_3139	2	blat.proc3825176.chain_3137	1
scaffold_2	starts_in_intron	4265823	4265823	-	asmbl_23059	none	blat.proc3825148.chain_1777	1	STRG.1858.1,blat.proc3825148.chain_1778	2
scaffold_20	retained_intron	5954529	5955148	-	asmbl_25806	none	Trinity_GG_12946_c0_g1_i1,blat.proc3825160.chain_290	2	STRG.23205.2,blat.proc3825160.chain_289	2
scaffold_5	spliced_intron	16314540	16314719	+	asmbl_46082,asmbl_46084	none	STRG.6829.1,blat.proc3825166.chain_3010,blat.proc3825166.chain_3012	3	blat.proc3825166.chain_3011	1
scaffold_8	retained_intron	17284349	17284435	-	asmbl_52439	none	blat.proc3825152.chain_2857	1	STRG.10651.1,blat.proc3825152.chain_2859	2
scaffold_21	alternate_exon	4256090	4256315	-	asmbl_27569	none	STRG.24003.1,blat.proc3825160.chain_1127	2	STRG.24003.2	1
scaffold_28	alt_donor	5755662	5755663	+	asmbl_37602	none	STRG.29716.2,Trinity_GG_33774_c0_g1_i2,blat.proc3825178.chain_2882	3	STRG.29716.1,Trinity_GG_33774_c0_g1_i1,blat.proc3825178.chain_2881	3
scaffold_2	starts_in_intron	4018593	4018593	-	asmbl_23035	none	blat.proc3825148.chain_1813	1	STRG.1846.1,blat.proc3825148.chain_1815	2
scaffold_3	retained_intron	8165106	8165645	-	asmbl_39022	none	blat.proc3825148.chain_3270	1	STRG.3440.1	1
scaffold_17	alt_acceptor	6684380	6684381	+	asmbl_18866	none	STRG.20322.1,blat.proc3825174.chain_1159	2	STRG.20322.3,blat.proc3825174.chain_1157	2
scaffold_6	ends_in_intron	18719607	18719607	-	asmbl_49268	none	Trinity_GG_4867_c0_g1_i5,blat.proc3825152.chain_970	2	STRG.8539.1	1
scaffold_1	spliced_intron	14375886	14375983	+	asmbl_2390	none	STRG.1038.1,blat.proc3825164.chain_1243	2	Trinity_GG_17951_c0_g1_i2,blat.proc3825164.chain_1244	2
scaffold_18	alt_acceptor	3915622	3915623	-	asmbl_19782,asmbl_19783,asmbl_19784,asmbl_19785,asmbl_19786	none	STRG.21203.2,STRG.21203.3,STRG.21203.4,STRG.21203.5,blat.proc3825158.chain_2160	5	STRG.21203.1	1
scaffold_23	alt_acceptor	4163077	4163078	-	asmbl_30839	none	STRG.25831.3,blat.proc3825160.chain_3026	2	STRG.25831.1,blat.proc3825160.chain_3027	2
scaffold_7	retained_intron	12259661	12259956	+	asmbl_50226	none	Trinity_GG_22482_c0_g1_i1,blat.proc3825168.chain_1836	2	STRG.9322.1,Trinity_GG_22482_c0_g1_i3,blat.proc3825168.chain_1837	3
scaffold_8	retained_exon	4871128	4871175	+	asmbl_52869,asmbl_52872	none	STRG.9952.2,blat.proc3825168.chain_2517,blat.proc3825168.chain_2519	3	STRG.9952.1,STRG.9952.3,blat.proc3825168.chain_2514,blat.proc3825168.chain_2516,blat.proc3825168.chain_2518	5
scaffold_24	alt_donor	6018270	6018271	-	asmbl_32922	none	STRG.26660.2	1	STRG.26660.1,blat.proc3825162.chain_38	2
scaffold_9	retained_exon	645134	645220	+	asmbl_53781	none	STRG.10793.1,blat.proc3825168.chain_3345	2	STRG.10793.2	1
scaffold_28	alt_donor	33340	33341	+	asmbl_37248	none	STRG.29236.2,blat.proc3825178.chain_2454	2	STRG.29236.1,blat.proc3825178.chain_2455,blat.proc3825178.chain_2456	3
scaffold_3	retained_intron	13179330	13179422	+	asmbl_40432	none	Trinity_GG_19370_c0_g2_i1,blat.proc3825166.chain_167	2	STRG.3682.1,blat.proc3825166.chain_163,blat.proc3825166.chain_165,blat.proc3825166.chain_166	4
scaffold_25	alternate_exon	6839453	6839504	-	asmbl_34373	none	STRG.27545.2,Trinity_GG_15458_c0_g1_i1,blat.proc3825162.chain_936	3	STRG.27545.1,Trinity_GG_15458_c0_g1_i2,blat.proc3825162.chain_937	3
scaffold_13	starts_in_intron	6571822	6571822	+	asmbl_10942	none	Trinity_GG_26040_c0_g1_i2,blat.proc3825172.chain_623	2	STRG.15946.1,Trinity_GG_26040_c0_g1_i1,blat.proc3825172.chain_624	3
scaffold_13	ends_in_intron	7279742	7279742	+	asmbl_11034	none	STRG.16025.1,blat.proc3825172.chain_767	2	STRG.16025.2	1
scaffold_2	ends_in_intron	8297029	8297029	-	asmbl_23322	none	STRG.2112.2,Trinity_GG_1170_c0_g1_i1,blat.proc3825148.chain_2131	3	STRG.2112.1,blat.proc3825148.chain_2130	2
scaffold_9	retained_exon	645134	645735	+	asmbl_53781	none	STRG.10793.1,blat.proc3825168.chain_3345	2	STRG.10793.3	1
scaffold_27	retained_intron	157697	157951	-	asmbl_36649,asmbl_36651	none	STRG.28549.2,STRG.28549.3,Trinity_GG_15970_c0_g1_i3,blat.proc3825162.chain_1775	4	STRG.28549.1,blat.proc3825162.chain_1774	2
scaffold_28	skipped_exon	3740466	3740968	-	asmbl_38171	none	STRG.29587.3	1	STRG.29587.1,STRG.29587.2,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2739	7
scaffold_13	alt_donor	4602222	4602223	-	asmbl_9649,asmbl_9652	none	blat.proc3825156.chain_662,blat.proc3825156.chain_670	2	Trinity_GG_8874_c0_g1_i6,blat.proc3825156.chain_666,blat.proc3825156.chain_673	3
scaffold_15	alternate_exon	15378555	15378584	-	asmbl_14769	none	STRG.18926.2,blat.proc3825156.chain_3738	2	STRG.18926.1,blat.proc3825156.chain_3737	2
scaffold_19	retained_intron	12247166	12247258	-	asmbl_22474	none	blat.proc3825158.chain_3308	1	STRG.22552.1,STRG.22552.2,blat.proc3825158.chain_3307,blat.proc3825158.chain_3309,blat.proc3825158.chain_3310,blat.proc3825158.chain_3311,blat.proc3825158.chain_3313	7
scaffold_13	retained_intron	15672407	15672426	+	asmbl_11525	none	STRG.16612.1	1	STRG.16612.3	1
scaffold_6	spliced_intron	5752485	5752688	+	asmbl_46973,asmbl_46974,asmbl_46976	none	STRG.7534.1,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	4	blat.proc3825166.chain_3735	1
scaffold_17	spliced_intron	9005779	9006436	+	asmbl_19054,asmbl_19055	none	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4	blat.proc3825174.chain_1323	1
scaffold_6	retained_intron	13877179	13877346	-	asmbl_48949	none	STRG.8137.1	1	STRG.8137.3,blat.proc3825152.chain_545	2
scaffold_11	starts_in_intron	5486790	5486790	-	asmbl_6660	none	blat.proc3825154.chain_2123	1	STRG.13617.1,blat.proc3825154.chain_2124	2
scaffold_5	starts_in_intron	12660316	12660316	+	asmbl_45810,asmbl_45814	none	STRG.6505.3,STRG.6505.4,blat.proc3825166.chain_2638	3	STRG.6505.1,STRG.6505.2,blat.proc3825166.chain_2636,blat.proc3825166.chain_2637,blat.proc3825166.chain_2639	5
scaffold_2	alt_donor	16424824	16424825	+	asmbl_25141	none	STRG.2580.1,blat.proc3825164.chain_2876	2	STRG.2580.2,blat.proc3825164.chain_2875	2
scaffold_15	starts_in_intron	12430604	12430604	+	asmbl_15567,asmbl_15569,asmbl_15570	none	Trinity_GG_27574_c0_g1_i7,blat.proc3825172.chain_3337,blat.proc3825172.chain_3340,blat.proc3825172.chain_3342,blat.proc3825172.chain_3343	5	STRG.18701.1,blat.proc3825172.chain_3338,blat.proc3825172.chain_3339,blat.proc3825172.chain_3341,blat.proc3825172.chain_3344	5
scaffold_3	alt_acceptor	14422612	14422613	+	asmbl_40519,asmbl_40520,asmbl_40521,asmbl_40522	none	STRG.3788.1,STRG.3788.2,STRG.3788.3,Trinity_GG_19450_c0_g1_i1,Trinity_GG_19450_c0_g1_i2,Trinity_GG_19450_c0_g1_i4,Trinity_GG_19450_c0_g2_i1,blat.proc3825166.chain_302,blat.proc3825166.chain_304,blat.proc3825166.chain_305,blat.proc3825166.chain_307	11	Trinity_GG_19450_c0_g1_i5,blat.proc3825166.chain_303	2
scaffold_15	alt_acceptor	15242076	15242077	-	asmbl_14764	none	STRG.18908.2	1	STRG.18908.1,Trinity_GG_10627_c0_g1_i2,blat.proc3825158.chain_35	3
scaffold_22	starts_in_intron	4282196	4282196	-	asmbl_29243	none	blat.proc3825160.chain_2086	1	STRG.24854.1,STRG.24854.2,STRG.24854.3,blat.proc3825160.chain_2083,blat.proc3825160.chain_2084,blat.proc3825160.chain_2085	6
scaffold_29	alt_acceptor	8293	8294	-	asmbl_38632	none	STRG.30013.2	1	STRG.30013.1,blat.proc3825162.chain_3176	2
scaffold_18	retained_intron	1895347	1897477	-	asmbl_19656,asmbl_19658,asmbl_19661,asmbl_19662,asmbl_19665	none	STRG.21081.3,blat.proc3825158.chain_2010,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2018	5	STRG.21081.6,STRG.21081.7	2
scaffold_11	spliced_intron	1605150	1605247	-	asmbl_6443	none	STRG.13339.1	1	STRG.13339.2	1
scaffold_1	retained_intron	20460128	20460181	+	asmbl_2635	none	STRG.1400.1	1	STRG.1400.4	1
scaffold_7	alternate_exon	18394449	18394936	-	asmbl_51474	none	Trinity_GG_5439_c0_g1_i12,blat.proc3825152.chain_2015	2	Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2014,blat.proc3825152.chain_2017	4
scaffold_10	spliced_intron	928914	929115	-	asmbl_4014	none	STRG.11969.1,blat.proc3825154.chain_534	2	STRG.11969.2,Trinity_GG_6664_c0_g1_i2,blat.proc3825154.chain_533	3
scaffold_7	spliced_intron	16823575	16823876	-	asmbl_51416,asmbl_51417	none	STRG.9596.2,blat.proc3825152.chain_1904	2	STRG.9596.1,blat.proc3825152.chain_1902,blat.proc3825152.chain_1903	3
scaffold_27	alt_donor	6258930	6258931	+	asmbl_36394,asmbl_36397,asmbl_36398	none	STRG.29016.2,STRG.29016.3,blat.proc3825178.chain_2193,blat.proc3825178.chain_2194	4	blat.proc3825178.chain_2191	1
scaffold_13	spliced_intron	7655940	7656087	+	asmbl_11061,asmbl_11062,asmbl_11065,asmbl_11066	none	STRG.16054.1,STRG.16054.2,blat.proc3825172.chain_820,blat.proc3825172.chain_821,blat.proc3825172.chain_825	5	blat.proc3825172.chain_824	1
scaffold_8	retained_intron	11850873	11851005	+	asmbl_53277,asmbl_53292,asmbl_53293	none	STRG.10390.2,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021	3	STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3015,blat.proc3825168.chain_3016,blat.proc3825168.chain_3019,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022,blat.proc3825168.chain_3023,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025,blat.proc3825168.chain_3027	12
scaffold_9	spliced_intron	8939956	8940066	-	asmbl_55146,asmbl_55147,asmbl_55148,asmbl_55149	none	STRG.11280.1,STRG.11280.2,blat.proc3825152.chain_3427,blat.proc3825152.chain_3429	4	blat.proc3825152.chain_3430,blat.proc3825152.chain_3431	2
scaffold_19	spliced_intron	9488173	9488268	-	asmbl_22332	none	STRG.22382.1,blat.proc3825158.chain_3168	2	blat.proc3825158.chain_3167	1
scaffold_15	starts_in_intron	12669958	12669958	-	asmbl_14600	none	blat.proc3825156.chain_3588	1	STRG.18724.1	1
scaffold_13	retained_exon	4602224	4602250	-	asmbl_9650	none	STRG.15796.1	1	Trinity_GG_8874_c0_g1_i6,blat.proc3825156.chain_666,blat.proc3825156.chain_673	3
scaffold_3	starts_in_intron	12453087	12453087	-	asmbl_39209	none	blat.proc3825148.chain_3509	1	STRG.3643.1,blat.proc3825148.chain_3507	2
scaffold_1	alt_donor	6907173	6907174	-	asmbl_401	none	STRG.487.1,blat.proc3825148.chain_442	2	blat.proc3825148.chain_444	1
scaffold_2	spliced_intron	15333838	15334058	+	asmbl_25029	none	STRG.2483.2,Trinity_GG_18716_c0_g1_i2	2	STRG.2483.3,Trinity_GG_18716_c0_g1_i3	2
scaffold_9	retained_intron	8180579	8180907	+	asmbl_54156,asmbl_54157	none	STRG.11248.1,STRG.11248.2,Trinity_GG_23577_c0_g1_i1,blat.proc3825170.chain_17,blat.proc3825170.chain_19	5	STRG.11248.3	1
scaffold_6	starts_in_intron	236161	236161	+	asmbl_46643	none	blat.proc3825166.chain_3298	1	STRG.7083.1,blat.proc3825166.chain_3297	2
scaffold_1	retained_intron	17729078	17729199	+	asmbl_2533	none	blat.proc3825164.chain_1408	1	STRG.1245.2,blat.proc3825164.chain_1409	2
scaffold_17	alt_acceptor	1718248	1718249	-	asmbl_17729	none	STRG.20006.3	1	STRG.20006.1,STRG.20006.2,blat.proc3825158.chain_1003	3
scaffold_1	retained_intron	8645316	8645414	-	asmbl_467,asmbl_472	none	blat.proc3825148.chain_581,blat.proc3825148.chain_586	2	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_584,blat.proc3825148.chain_585	5
scaffold_6	starts_in_intron	11488509	11488509	+	asmbl_47335	none	blat.proc3825168.chain_311	1	STRG.7943.1,STRG.7943.2,STRG.7943.3,STRG.7943.4,blat.proc3825168.chain_309,blat.proc3825168.chain_310,blat.proc3825168.chain_312,blat.proc3825168.chain_313,blat.proc3825168.chain_314	9
scaffold_10	starts_in_intron	6054491	6054491	+	asmbl_3225	none	STRG.12435.5,blat.proc3825170.chain_1070	2	STRG.12435.1,STRG.12435.2,STRG.12435.3,STRG.12435.4,blat.proc3825170.chain_1067,blat.proc3825170.chain_1069,blat.proc3825170.chain_1071	7
scaffold_2	starts_in_intron	13403612	13403612	+	asmbl_24852	none	Trinity_GG_18638_c1_g1_i1,blat.proc3825164.chain_2549	2	STRG.2365.1,Trinity_GG_18638_c1_g1_i2,blat.proc3825164.chain_2551	3
scaffold_4	retained_intron	4433640	4433862	+	asmbl_41267	none	STRG.4342.1,blat.proc3825166.chain_791	2	STRG.4342.2,STRG.4342.3,blat.proc3825166.chain_792	3
scaffold_21	spliced_intron	11346118	11346201	-	asmbl_28122,asmbl_28123	none	STRG.24614.2,STRG.24614.3	2	STRG.24614.4	1
scaffold_9	alt_acceptor	650549	650550	+	asmbl_53786,asmbl_53787	none	STRG.10795.1,STRG.10795.2,blat.proc3825168.chain_3338	3	STRG.10795.3	1
scaffold_16	alternate_exon	13206048	13212708	+	asmbl_16651,asmbl_16652	none	STRG.19781.1,STRG.19781.2,blat.proc3825174.chain_693,blat.proc3825174.chain_695	4	STRG.19781.3	1
scaffold_10	retained_intron	9555581	9557098	+	asmbl_3405	none	blat.proc3825170.chain_1279	1	STRG.12711.2,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1287	3
scaffold_12	retained_exon	6417131	6417247	+	asmbl_7680,asmbl_7682,asmbl_7684	none	STRG.14753.1,STRG.14753.2,blat.proc3825170.chain_3273,blat.proc3825170.chain_3275	4	STRG.14753.3,blat.proc3825170.chain_3274	2
scaffold_16	retained_intron	6199474	6199753	+	asmbl_16299	none	Trinity_GG_27898_c0_g1_i3,blat.proc3825174.chain_249	2	STRG.19371.1,STRG.19371.2,blat.proc3825174.chain_251	3
scaffold_24	alt_acceptor	420761	420762	+	asmbl_32010	none	STRG.26330.1,blat.proc3825176.chain_3297	2	STRG.26330.2	1
scaffold_19	retained_intron	3669778	3669984	-	asmbl_22119	none	Trinity_GG_12309_c0_g1_i5,blat.proc3825158.chain_2899	2	STRG.22046.2,Trinity_GG_12309_c0_g1_i3,blat.proc3825158.chain_2897	3
scaffold_13	spliced_intron	221295	221368	+	asmbl_10461,asmbl_10463	none	STRG.15430.1,blat.proc3825172.chain_173,blat.proc3825172.chain_174	3	blat.proc3825172.chain_175	1
scaffold_1	retained_intron	8643305	8643562	-	asmbl_467,asmbl_469	none	blat.proc3825148.chain_579,blat.proc3825148.chain_581,blat.proc3825148.chain_584	3	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_585,blat.proc3825148.chain_586	5
scaffold_26	starts_in_intron	4834412	4834412	+	asmbl_34934	none	Trinity_GG_32858_c0_g1_i2,blat.proc3825178.chain_1229	2	STRG.28200.1	1
scaffold_23	starts_in_intron	4104118	4104118	-	asmbl_30831	none	blat.proc3825160.chain_3031	1	STRG.25826.1,STRG.25826.2,blat.proc3825160.chain_3029	3
scaffold_19	alt_donor	12392955	12392956	-	asmbl_22478,asmbl_22479,asmbl_22481,asmbl_22482	none	STRG.22570.1,STRG.22570.2,blat.proc3825158.chain_3326,blat.proc3825158.chain_3328,blat.proc3825158.chain_3329,blat.proc3825158.chain_3330	6	STRG.22570.3,blat.proc3825158.chain_3327	2
scaffold_3	alternate_exon	4898690	4898819	-	asmbl_38823	none	STRG.3187.2	1	STRG.3187.1,blat.proc3825148.chain_3019	2
scaffold_8	alt_acceptor	9126052	9126053	-	asmbl_52010,asmbl_52011	none	STRG.10172.4,blat.proc3825152.chain_2387	2	STRG.10172.1,STRG.10172.2,STRG.10172.3,blat.proc3825152.chain_2389	4
scaffold_13	ends_in_intron	5840622	5840622	-	asmbl_9733,asmbl_9737	none	Trinity_GG_8938_c0_g1_i6,blat.proc3825156.chain_769,blat.proc3825156.chain_770	3	STRG.15894.1,blat.proc3825156.chain_771,blat.proc3825156.chain_773	3
scaffold_18	retained_intron	4574673	4575183	+	asmbl_20535	none	blat.proc3825174.chain_2218	1	STRG.21248.1,STRG.21248.2,blat.proc3825174.chain_2216,blat.proc3825174.chain_2217,blat.proc3825174.chain_2219	5
scaffold_4	alt_donor	14965775	14965776	+	asmbl_41908,asmbl_41909,asmbl_41910,asmbl_41912	none	STRG.5106.1,STRG.5106.2,Trinity_GG_20178_c0_g1_i4,blat.proc3825166.chain_1532,blat.proc3825166.chain_1533,blat.proc3825166.chain_1534,blat.proc3825166.chain_1535	7	blat.proc3825166.chain_1531	1
scaffold_20	retained_exon	428278	428414	+	asmbl_26351	none	STRG.22745.1	1	STRG.22745.2	1
scaffold_23	starts_in_intron	7432170	7432170	+	asmbl_31697	none	Trinity_GG_31695_c0_g1_i2,blat.proc3825176.chain_2999	2	STRG.26059.1,blat.proc3825176.chain_2998	2
scaffold_2	retained_intron	8064152	8064334	+	asmbl_24611	none	Trinity_GG_18492_c0_g1_i1,blat.proc3825164.chain_2260	2	STRG.2102.1,blat.proc3825164.chain_2261	2
scaffold_3	retained_intron	2264175	2264205	+	asmbl_39903	none	Trinity_GG_18996_c0_g1_i1,blat.proc3825164.chain_3213	2	STRG.3025.1	1
scaffold_1	starts_in_intron	11546521	11546521	+	asmbl_2117	none	Trinity_GG_17785_c0_g1_i2,blat.proc3825164.chain_904	2	STRG.763.1,STRG.763.2,Trinity_GG_17785_c0_g1_i1,blat.proc3825164.chain_905	4
scaffold_27	alt_acceptor	4939044	4939045	+	asmbl_36325,asmbl_36326,asmbl_36327,asmbl_36329,asmbl_36330	none	STRG.28932.1,STRG.28932.2,STRG.28932.3,blat.proc3825178.chain_2145,blat.proc3825178.chain_2146,blat.proc3825178.chain_2147	6	STRG.28932.4	1
scaffold_5	spliced_intron	5061259	5061405	+	asmbl_45338,asmbl_45340,asmbl_45342	none	STRG.5963.1,STRG.5963.2,STRG.5963.3,Trinity_GG_20579_c0_g1_i3,blat.proc3825166.chain_2191,blat.proc3825166.chain_2192	6	STRG.5963.4,Trinity_GG_20579_c0_g1_i2,blat.proc3825166.chain_2190	3
scaffold_28	alt_donor	3541037	3541038	-	asmbl_38157	none	STRG.29570.2,blat.proc3825162.chain_2721	2	STRG.29570.1,STRG.29570.3,blat.proc3825162.chain_2720	3
scaffold_20	retained_intron	7473965	7474216	-	asmbl_25910	none	blat.proc3825160.chain_466	1	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_461,blat.proc3825160.chain_462,blat.proc3825160.chain_463,blat.proc3825160.chain_465,blat.proc3825160.chain_467	7
scaffold_2	alt_donor	19771808	19771809	+	asmbl_25286	none	blat.proc3825164.chain_3072	1	STRG.2827.1,STRG.2827.2,blat.proc3825164.chain_3073,blat.proc3825164.chain_3074	4
scaffold_1555	alternate_exon	18	100	-	asmbl_15975	none	STRG.30628.1	1	STRG.30628.4	1
scaffold_8	retained_exon	6809265	6809297	-	asmbl_51889	none	STRG.10044.1,blat.proc3825152.chain_2305	2	STRG.10044.2,blat.proc3825152.chain_2307	2
scaffold_8	spliced_intron	8180856	8181693	+	asmbl_53004,asmbl_53005,asmbl_53006,asmbl_53007	none	STRG.10103.1,STRG.10103.2,STRG.10103.3,STRG.10103.4,blat.proc3825168.chain_2696	5	blat.proc3825168.chain_2699	1
scaffold_13	ends_in_intron	16367287	16367287	-	asmbl_10298	none	blat.proc3825156.chain_1484	1	STRG.16690.1,STRG.16690.2,blat.proc3825156.chain_1483	3
scaffold_1	alternate_exon	12748638	12748713	-	asmbl_752,asmbl_753	none	STRG.895.5,Trinity_GG_447_c0_g1_i3,blat.proc3825148.chain_852	3	STRG.895.1,blat.proc3825148.chain_850	2
scaffold_4	retained_intron	4417120	4417266	+	asmbl_41249,asmbl_41250,asmbl_41256	none	Trinity_GG_19749_c0_g1_i2,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_850,blat.proc3825166.chain_853,blat.proc3825166.chain_855	5	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,blat.proc3825166.chain_842,blat.proc3825166.chain_847,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_851,blat.proc3825166.chain_854	12
scaffold_13	alt_donor	13273441	13273442	+	asmbl_11382	none	STRG.16399.2	1	STRG.16399.1,blat.proc3825172.chain_1206	2
scaffold_19	starts_in_intron	11721814	11721814	-	asmbl_22431	none	STRG.22502.1,blat.proc3825158.chain_3273	2	STRG.22502.2,blat.proc3825158.chain_3271	2
scaffold_5	spliced_intron	19463375	19463478	-	asmbl_44919	none	STRG.7044.1	1	STRG.7044.2	1
scaffold_5	spliced_intron	1136209	1136301	-	asmbl_43826	none	STRG.5663.2	1	STRG.5663.1	1
scaffold_6	alt_acceptor	11484924	11484925	+	asmbl_47332,asmbl_47334	none	STRG.7943.3,blat.proc3825168.chain_313	2	STRG.7943.1,STRG.7943.2,STRG.7943.4,blat.proc3825168.chain_309,blat.proc3825168.chain_310,blat.proc3825168.chain_312,blat.proc3825168.chain_314	7
scaffold_15	starts_in_intron	3152209	3152209	-	asmbl_14083	none	blat.proc3825156.chain_2851	1	STRG.18101.1,Trinity_GG_10139_c0_g1_i3,blat.proc3825156.chain_2850	3
scaffold_17	alt_acceptor	5507358	5507359	-	asmbl_17942	none	STRG.20270.1	1	STRG.20270.2	1
scaffold_1	starts_in_intron	11130981	11130981	-	asmbl_609	none	blat.proc3825148.chain_667	1	STRG.734.1,blat.proc3825148.chain_666,blat.proc3825148.chain_668	3
scaffold_8	retained_intron	11846516	11848424	+	asmbl_53277,asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53288	none	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3016,blat.proc3825168.chain_3019,blat.proc3825168.chain_3022,blat.proc3825168.chain_3027	8	blat.proc3825168.chain_3020,blat.proc3825168.chain_3023	2
scaffold_5	retained_intron	5045141	5046460	+	asmbl_45325,asmbl_45328	none	STRG.5958.4,blat.proc3825166.chain_2128,blat.proc3825166.chain_2129	3	STRG.5958.1,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126	3
scaffold_21	starts_in_intron	2151263	2151263	-	asmbl_27433	none	STRG.23835.1,blat.proc3825160.chain_903	2	STRG.23835.2,blat.proc3825160.chain_904,blat.proc3825160.chain_905	3
scaffold_4	retained_intron	3243470	3243537	-	asmbl_42427	none	STRG.4251.1	1	STRG.4251.2	1
scaffold_11	alt_acceptor	788017	788018	+	asmbl_5298	none	STRG.13279.1,blat.proc3825170.chain_1839	2	STRG.13279.2,blat.proc3825170.chain_1838	2
scaffold_11	spliced_intron	11640396	11641269	+	asmbl_5980,asmbl_5989	none	STRG.14090.1,blat.proc3825170.chain_2633,blat.proc3825170.chain_2639	3	blat.proc3825170.chain_2634,blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2640	5
scaffold_23	alternate_exon	800997	805268	-	asmbl_30609,asmbl_30611	none	STRG.25583.1,STRG.25583.2	2	blat.proc3825160.chain_2754	1
scaffold_15	skipped_exon	15188079	15189525	+	asmbl_15729	none	blat.proc3825172.chain_3530	1	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3520,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3529,blat.proc3825172.chain_3532,blat.proc3825172.chain_3536	11
scaffold_4	alternate_exon	7657315	7657489	-	asmbl_42730	none	STRG.4597.1	1	STRG.4597.2,blat.proc3825150.chain_835	2
scaffold_21	ends_in_intron	8012278	8012278	+	asmbl_28783	none	blat.proc3825176.chain_1539	1	STRG.24338.1,Trinity_GG_30790_c0_g1_i1,blat.proc3825176.chain_1540	3
scaffold_25	ends_in_intron	8700347	8700347	-	asmbl_34464	none	STRG.27695.6,blat.proc3825162.chain_1026	2	STRG.27695.2,STRG.27695.3,STRG.27695.5,blat.proc3825162.chain_1020,blat.proc3825162.chain_1023	5
scaffold_2	spliced_intron	5391853	5391989	-	asmbl_23147,asmbl_23148	none	STRG.1948.1,blat.proc3825148.chain_1875,blat.proc3825148.chain_1876	3	blat.proc3825148.chain_1877	1
scaffold_1	starts_in_intron	5740774	5740774	+	asmbl_1774	none	Trinity_GG_17568_c0_g1_i8,blat.proc3825164.chain_527	2	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528	5
scaffold_2	retained_intron	7324282	7325889	+	asmbl_24562	none	STRG.2062.1,Trinity_GG_18498_c0_g1_i3,Trinity_GG_18498_c0_g1_i4,blat.proc3825164.chain_2280,blat.proc3825164.chain_2281	5	STRG.2062.2	1
scaffold_11	starts_in_intron	16652686	16652686	+	asmbl_6170	none	Trinity_GG_25219_c0_g1_i2,blat.proc3825170.chain_2889	2	STRG.14364.1,blat.proc3825170.chain_2891,blat.proc3825170.chain_2892	3
scaffold_27	starts_in_intron	4385371	4385371	+	asmbl_36281	none	STRG.28897.4	1	STRG.28897.2,STRG.28897.3,blat.proc3825178.chain_2087	3
scaffold_11	ends_in_intron	2427064	2427064	-	asmbl_6498	none	blat.proc3825154.chain_1978	1	STRG.13392.1,blat.proc3825154.chain_1979	2
scaffold_10	alternate_exon	8328578	8329037	-	asmbl_4577,asmbl_4581,asmbl_4582,asmbl_4583	none	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1186,blat.proc3825154.chain_1188,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190	6	blat.proc3825154.chain_1192	1
scaffold_14	ends_in_intron	10693067	10693067	+	asmbl_12341	none	blat.proc3825172.chain_2155	1	STRG.17422.1,STRG.17422.4,blat.proc3825172.chain_2154,blat.proc3825172.chain_2156	4
scaffold_4	alt_donor	6701505	6701506	+	asmbl_41424	none	STRG.4531.3	1	STRG.4531.1,STRG.4531.2,blat.proc3825166.chain_908	3
scaffold_9	spliced_intron	14817657	14817753	-	asmbl_55496,asmbl_55503	none	STRG.11702.4,STRG.11702.6,blat.proc3825154.chain_163	3	STRG.11702.3,Trinity_GG_6457_c0_g1_i1,blat.proc3825154.chain_161,blat.proc3825154.chain_164	4
scaffold_2	skipped_exon	14228244	14228598	-	asmbl_23587	none	STRG.2420.1	1	blat.proc3825148.chain_2409	1
scaffold_25	retained_exon	5156803	5156837	-	asmbl_34244,asmbl_34246,asmbl_34247,asmbl_34248,asmbl_34250,asmbl_34251	none	STRG.27443.1,STRG.27443.2,blat.proc3825162.chain_805,blat.proc3825162.chain_806,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809,blat.proc3825162.chain_810	8	STRG.27443.3	1
scaffold_11	spliced_intron	9950772	9950860	-	asmbl_6969	none	STRG.14013.1,blat.proc3825154.chain_2520	2	blat.proc3825154.chain_2519	1
scaffold_18	spliced_intron	7866184	7866281	-	asmbl_19982,asmbl_19984	none	STRG.21486.1,blat.proc3825158.chain_2406	2	blat.proc3825158.chain_2407	1
scaffold_10	skipped_exon	13960219	13960633	-	asmbl_4940	none	STRG.12996.2	1	STRG.12996.1,blat.proc3825154.chain_1562	2
scaffold_15	alt_acceptor	15156159	15156160	+	asmbl_15718,asmbl_15719,asmbl_15721	none	STRG.18906.5,Trinity_GG_27624_c0_g1_i8,blat.proc3825172.chain_3438,blat.proc3825172.chain_3439	4	Trinity_GG_27624_c0_g1_i6,blat.proc3825172.chain_3436,blat.proc3825172.chain_3440	3
scaffold_24	retained_intron	8750513	8750667	-	asmbl_33104,asmbl_33106,asmbl_33107	none	STRG.26893.1,blat.proc3825162.chain_243,blat.proc3825162.chain_244,blat.proc3825162.chain_245	4	STRG.26893.2,blat.proc3825162.chain_242	2
scaffold_7	alternate_exon	16149826	16149851	+	asmbl_50468	none	STRG.9579.3	1	STRG.9579.1,STRG.9579.2,Trinity_GG_22634_c0_g1_i1,Trinity_GG_22634_c0_g1_i2,blat.proc3825168.chain_2117,blat.proc3825168.chain_2118	6
scaffold_5	starts_in_intron	17921495	17921495	-	asmbl_44821	none	Trinity_GG_3872_c0_g1_i2,blat.proc3825150.chain_3073	2	STRG.6940.1,Trinity_GG_3872_c0_g1_i1,blat.proc3825150.chain_3072	3
scaffold_26	starts_in_intron	4469742	4469742	+	asmbl_34913	none	Trinity_GG_32865_c2_g1_i1,blat.proc3825178.chain_1250	2	STRG.28157.1,blat.proc3825178.chain_1247,blat.proc3825178.chain_1248,blat.proc3825178.chain_1249	4
scaffold_18	retained_intron	9259474	9259564	-	asmbl_20062	none	STRG.21569.3	1	STRG.21569.1,STRG.21569.2,Trinity_GG_12060_c0_g1_i1,blat.proc3825158.chain_2485,blat.proc3825158.chain_2488	5
scaffold_27	ends_in_intron	7229321	7229321	+	asmbl_36434	none	STRG.29080.1	1	STRG.29080.2,blat.proc3825178.chain_2275	2
scaffold_16	alternate_exon	4064548	4064713	-	asmbl_17046	none	STRG.19223.2	1	STRG.19223.1,blat.proc3825158.chain_352	2
scaffold_27	ends_in_intron	6069760	6069760	+	asmbl_36370	none	blat.proc3825178.chain_2209	1	STRG.29007.1,STRG.29007.2,blat.proc3825178.chain_2207,blat.proc3825178.chain_2208	4
scaffold_4	spliced_intron	19274897	19275126	-	asmbl_43419,asmbl_43420	none	STRG.5511.1,blat.proc3825150.chain_1705,blat.proc3825150.chain_1707	3	Trinity_GG_3099_c0_g1_i2,Trinity_GG_3099_c0_g1_i3,blat.proc3825150.chain_1704,blat.proc3825150.chain_1706	4
scaffold_12	alt_donor	16729887	16729888	-	asmbl_9143	none	STRG.15418.1,Trinity_GG_8621_c0_g1_i1,blat.proc3825156.chain_220	3	STRG.15418.2,Trinity_GG_8621_c0_g1_i5,blat.proc3825156.chain_221	3
scaffold_17	starts_in_intron	3381242	3381242	-	asmbl_17810	none	blat.proc3825158.chain_1124	1	STRG.20119.1	1
scaffold_7	starts_in_intron	9861521	9861521	-	asmbl_51095	none	blat.proc3825152.chain_1469	1	STRG.9189.1,STRG.9189.3,blat.proc3825152.chain_1466,blat.proc3825152.chain_1468	4
scaffold_13	starts_in_intron	7197306	7197306	-	asmbl_9865,asmbl_9866	none	STRG.16016.5,blat.proc3825156.chain_957	2	STRG.16016.1,STRG.16016.3,blat.proc3825156.chain_960,blat.proc3825156.chain_961	4
scaffold_1	retained_intron	12407759	12407879	+	asmbl_2208,asmbl_2210	none	STRG.856.1,Trinity_GG_17800_c0_g1_i2,Trinity_GG_17800_c0_g1_i3,Trinity_GG_17800_c0_g1_i5,blat.proc3825164.chain_944,blat.proc3825164.chain_945,blat.proc3825164.chain_946	7	STRG.856.2,Trinity_GG_17800_c0_g1_i1,blat.proc3825164.chain_943	3
scaffold_21	alternate_exon	257556	257779	-	asmbl_27286,asmbl_27290,asmbl_27292,asmbl_27293,asmbl_27294,asmbl_27296,asmbl_27297	none	blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_812	7	blat.proc3825160.chain_807	1
scaffold_7	retained_intron	12727956	12728043	+	asmbl_50296	none	blat.proc3825168.chain_1913	1	STRG.9391.1,blat.proc3825168.chain_1914	2
scaffold_23	retained_intron	10131332	10131437	-	asmbl_31124	none	STRG.26219.1,blat.proc3825160.chain_3308	2	STRG.26219.2	1
scaffold_4	retained_intron	4890208	4890382	-	asmbl_42538	none	Trinity_GG_2453_c0_g1_i1,blat.proc3825150.chain_616	2	STRG.4382.1,blat.proc3825150.chain_617	2
scaffold_19	starts_in_intron	12248816	12248816	-	asmbl_22470,asmbl_22473	none	blat.proc3825158.chain_3309,blat.proc3825158.chain_3313	2	STRG.22552.1,STRG.22552.2,blat.proc3825158.chain_3307,blat.proc3825158.chain_3308,blat.proc3825158.chain_3310,blat.proc3825158.chain_3311	6
scaffold_5	retained_intron	233770	233796	+	asmbl_45092	none	STRG.5589.1	1	STRG.5589.2	1
scaffold_1	alternate_exon	14201385	14202248	+	asmbl_2341,asmbl_2343	none	Trinity_GG_17929_c0_g1_i1,Trinity_GG_17929_c0_g1_i4,blat.proc3825164.chain_1187,blat.proc3825164.chain_1189,blat.proc3825164.chain_1195	5	STRG.1008.1,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1192	5
scaffold_20	spliced_intron	8293418	8293589	+	asmbl_26762	none	blat.proc3825176.chain_522	1	STRG.23374.1,STRG.23374.2,STRG.23374.3,STRG.23374.4,Trinity_GG_30200_c1_g1_i1,blat.proc3825176.chain_521	6
scaffold_16	retained_intron	3821260	3821374	-	asmbl_17003	none	STRG.19185.1,Trinity_GG_10774_c0_g1_i2,blat.proc3825158.chain_315	3	Trinity_GG_10774_c0_g1_i1,blat.proc3825158.chain_314	2
scaffold_10	starts_in_intron	8342079	8342079	-	asmbl_4587	none	Trinity_GG_7048_c0_g1_i2,blat.proc3825154.chain_1217	2	STRG.12600.1,blat.proc3825154.chain_1218	2
scaffold_23	retained_exon	4100078	4100213	-	asmbl_30831	none	blat.proc3825160.chain_3031	1	STRG.25826.2	1
scaffold_11	alt_donor	12892155	12892156	+	asmbl_6027	none	STRG.14171.2,blat.proc3825170.chain_2714	2	STRG.14171.1,blat.proc3825170.chain_2715	2
scaffold_10	retained_intron	3065944	3066072	-	asmbl_4158,asmbl_4160	none	blat.proc3825154.chain_666,blat.proc3825154.chain_667	2	STRG.12130.2,STRG.12130.3,blat.proc3825154.chain_662,blat.proc3825154.chain_663,blat.proc3825154.chain_665	5
scaffold_7	alt_acceptor	129710	129711	-	asmbl_50664	none	STRG.8595.2	1	STRG.8595.7	1
scaffold_2	alternate_exon	12723368	12723517	+	asmbl_24806	none	STRG.2320.5	1	STRG.2320.3	1
scaffold_4	ends_in_intron	5050838	5050838	+	asmbl_41329	none	blat.proc3825166.chain_876	1	STRG.4395.1,STRG.4395.2,Trinity_GG_19757_c0_g1_i2,blat.proc3825166.chain_877	4
scaffold_21	spliced_intron	5549480	5549620	+	asmbl_28576,asmbl_28577,asmbl_28579,asmbl_28580	none	STRG.24088.1,STRG.24088.2,blat.proc3825176.chain_1302,blat.proc3825176.chain_1303,blat.proc3825176.chain_1304,blat.proc3825176.chain_1305	6	Trinity_GG_30663_c0_g1_i3,blat.proc3825176.chain_1306	2
scaffold_2	retained_intron	14561797	14561960	+	asmbl_24958	none	blat.proc3825164.chain_2654	1	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	10
scaffold_17	skipped_exon	12221211	12223396	-	asmbl_18321	none	STRG.20758.2	1	STRG.20758.1,blat.proc3825158.chain_1699	2
scaffold_19	skipped_exon	13157579	13158046	+	asmbl_21859	none	STRG.22640.1	1	STRG.22640.2,Trinity_GG_29825_c0_g1_i1,blat.proc3825174.chain_3663	3
scaffold_18	retained_exon	6270108	6270145	+	asmbl_20665	none	STRG.21358.2,Trinity_GG_29085_c0_g1_i1,blat.proc3825174.chain_2341	3	STRG.21358.1,blat.proc3825174.chain_2342	2
scaffold_24	starts_in_intron	39672	39672	-	asmbl_32687	none	STRG.26314.5	1	Trinity_GG_14706_c0_g1_i1,blat.proc3825160.chain_3434	2
scaffold_2	spliced_intron	888427	888576	+	asmbl_24132,asmbl_24133,asmbl_24135	none	STRG.1565.2,STRG.1565.3,STRG.1565.4	3	Trinity_GG_18210_c1_g1_i8,blat.proc3825164.chain_1712,blat.proc3825164.chain_1714,blat.proc3825164.chain_1715,blat.proc3825164.chain_1716	5
scaffold_17	alternate_exon	6799513	6799713	+	asmbl_18876	none	blat.proc3825174.chain_1166	1	STRG.20333.3	1
scaffold_17	alt_donor	4809620	4809621	-	asmbl_17892	none	STRG.20217.1	1	STRG.20217.2,blat.proc3825158.chain_1206	2
scaffold_2	spliced_intron	13403024	13403216	+	asmbl_24851	none	Trinity_GG_18638_c1_g1_i2,blat.proc3825164.chain_2551	2	STRG.2365.1,Trinity_GG_18638_c1_g1_i4,blat.proc3825164.chain_2550	3
scaffold_4	alt_acceptor	4928320	4928321	+	asmbl_41319,asmbl_41320	none	STRG.4388.1,STRG.4388.2,blat.proc3825166.chain_869	3	blat.proc3825166.chain_870	1
scaffold_10	retained_intron	16475794	16476026	-	asmbl_5005,asmbl_5008	none	STRG.13119.2,Trinity_GG_7353_c0_g1_i2,blat.proc3825154.chain_1717	3	STRG.13119.1	1
scaffold_16	alt_donor	4721045	4721046	+	asmbl_16198	none	STRG.19254.1,blat.proc3825174.chain_50	2	STRG.19254.2,STRG.19254.3,blat.proc3825174.chain_49	3
scaffold_10	spliced_intron	11093689	11093875	+	asmbl_3448	none	STRG.12775.2,Trinity_GG_24352_c0_g1_i1,blat.proc3825170.chain_1368	3	STRG.12775.1,Trinity_GG_24352_c0_g1_i2,blat.proc3825170.chain_1369	3
scaffold_10	retained_intron	8330959	8331706	-	asmbl_4584	none	blat.proc3825154.chain_1182	1	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1187,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190,blat.proc3825154.chain_1192	6
scaffold_1	ends_in_intron	1257930	1257930	-	asmbl_59	none	STRG.76.3,blat.proc3825148.chain_12	2	STRG.76.1,blat.proc3825148.chain_11	2
scaffold_5	spliced_intron	17226676	17226936	+	asmbl_46147,asmbl_46151	none	STRG.6896.1,blat.proc3825166.chain_3076,blat.proc3825166.chain_3077	3	Trinity_GG_21086_c0_g1_i8,blat.proc3825166.chain_3073,blat.proc3825166.chain_3074	3
scaffold_1	starts_in_intron	18321262	18321262	+	asmbl_2549	none	blat.proc3825164.chain_1357	1	STRG.1285.1,STRG.1285.2,blat.proc3825164.chain_1356	3
scaffold_14	starts_in_intron	13612553	13612553	+	asmbl_12491	none	blat.proc3825172.chain_2361	1	STRG.17647.1,blat.proc3825172.chain_2360	2
scaffold_18	retained_intron	13649190	13649215	+	asmbl_21031	none	STRG.21798.2	1	blat.proc3825174.chain_2823	1
scaffold_13	alt_acceptor	9609098	9609099	+	asmbl_11211,asmbl_11213	none	STRG.16227.1,blat.proc3825172.chain_1038,blat.proc3825172.chain_1039,blat.proc3825172.chain_1041,blat.proc3825172.chain_1042	5	STRG.16227.2	1
scaffold_11	alt_donor	9830658	9830659	+	asmbl_5907	none	STRG.14008.3,Trinity_GG_25038_c0_g1_i4,blat.proc3825170.chain_2561	3	STRG.14008.2,blat.proc3825170.chain_2556	2
scaffold_7	starts_in_intron	1447690	1447690	-	asmbl_50730	none	blat.proc3825152.chain_1130	1	STRG.8648.1,STRG.8648.2	2
scaffold_20	retained_intron	10468860	10469189	-	asmbl_26101	none	STRG.23584.2,blat.proc3825160.chain_637	2	STRG.23584.1,blat.proc3825160.chain_639,blat.proc3825160.chain_640	3
scaffold_18	skipped_exon	7241529	7241972	+	asmbl_20730	none	STRG.21430.2,blat.proc3825174.chain_2381	2	STRG.21430.1,blat.proc3825174.chain_2380	2
scaffold_2	retained_exon	2455317	2455394	-	asmbl_22895	none	STRG.1690.1,blat.proc3825148.chain_1632	2	STRG.1690.2,blat.proc3825148.chain_1631	2
scaffold_5	starts_in_intron	5042497	5042497	+	asmbl_45326	none	Trinity_GG_20544_c2_g1_i1,blat.proc3825166.chain_2130	2	STRG.5958.3,STRG.5958.4	2
scaffold_723	skipped_exon	1831	2666	-	asmbl_51617,asmbl_51621	none	STRG.30450.2,STRG.30450.4,blat.proc3825162.chain_3548	3	STRG.30450.1,STRG.30450.3,blat.proc3825162.chain_3547,blat.proc3825162.chain_3550	4
scaffold_28	spliced_intron	8422122	8422142	+	asmbl_37749	none	STRG.29915.1	1	Trinity_GG_33882_c0_g1_i1,Trinity_GG_33882_c0_g1_i2,blat.proc3825178.chain_3084	3
scaffold_18	alt_acceptor	7512066	7512067	-	asmbl_19951	none	STRG.21446.2	1	STRG.21446.1,blat.proc3825158.chain_2282	2
scaffold_18	spliced_intron	4768861	4768995	+	asmbl_20559	none	STRG.21273.2	1	STRG.21273.1,Trinity_GG_29026_c0_g1_i1,blat.proc3825174.chain_2227	3
scaffold_23	alternate_exon	5619881	5620023	-	asmbl_30928	none	Trinity_GG_14487_c0_g1_i1,blat.proc3825160.chain_3056	2	STRG.25937.3,STRG.25937.4,Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057,blat.proc3825160.chain_3058	5
scaffold_10	alt_acceptor	14688186	14688187	+	asmbl_3649,asmbl_3651	none	STRG.13014.1,STRG.13014.3,blat.proc3825170.chain_1571	3	STRG.13014.2	1
scaffold_12	starts_in_intron	9042992	9042992	-	asmbl_8647	none	blat.proc3825154.chain_3418	1	STRG.14917.1,blat.proc3825154.chain_3417	2
scaffold_1	retained_intron	5748213	5748415	+	asmbl_1786,asmbl_1787	none	STRG.378.1,STRG.378.3,blat.proc3825164.chain_513,blat.proc3825164.chain_516	4	STRG.378.2,Trinity_GG_17563_c0_g1_i1,blat.proc3825164.chain_515	3
scaffold_5	starts_in_intron	6190005	6190005	+	asmbl_45411	none	Trinity_GG_20625_c0_g1_i2,blat.proc3825166.chain_2276	2	STRG.6033.1,STRG.6033.2,blat.proc3825166.chain_2278,blat.proc3825166.chain_2280	4
scaffold_11	retained_intron	9832014	9832321	+	asmbl_5910,asmbl_5911,asmbl_5914	none	STRG.14008.5,Trinity_GG_25038_c0_g1_i2,blat.proc3825170.chain_2558,blat.proc3825170.chain_2559,blat.proc3825170.chain_2564	5	STRG.14008.4,Trinity_GG_25038_c0_g1_i10,blat.proc3825170.chain_2563	3
scaffold_15	starts_in_intron	8986186	8986186	+	asmbl_15375	none	blat.proc3825172.chain_3141	1	STRG.18445.1,blat.proc3825172.chain_3138	2
scaffold_2	spliced_intron	14561522	14561619	+	asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961	none	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11	Trinity_GG_18675_c0_g1_i21,blat.proc3825164.chain_2655,blat.proc3825164.chain_2659	3
scaffold_5	retained_exon	15044158	15044202	-	asmbl_44637	none	STRG.6698.5	1	STRG.6698.6,Trinity_GG_3732_c0_g1_i2,blat.proc3825150.chain_2825	3
scaffold_20	retained_intron	12074998	12075218	-	asmbl_26217	none	blat.proc3825160.chain_686	1	STRG.23706.1,blat.proc3825160.chain_685,blat.proc3825160.chain_687,blat.proc3825160.chain_688	4
scaffold_13	starts_in_intron	8357043	8357043	+	asmbl_11126	none	blat.proc3825172.chain_914	1	STRG.16130.1,STRG.16130.2,STRG.16130.3,STRG.16130.4,Trinity_GG_26184_c0_g1_i5,blat.proc3825172.chain_915,blat.proc3825172.chain_917,blat.proc3825172.chain_918,blat.proc3825172.chain_919	9
scaffold_16	spliced_intron	3706316	3706582	+	asmbl_16147	none	STRG.19177.1,blat.proc3825174.chain_107	2	blat.proc3825174.chain_106	1
scaffold_11	starts_in_intron	8087294	8087294	+	asmbl_5720	none	Trinity_GG_24933_c0_g1_i1,blat.proc3825170.chain_2374	2	STRG.13818.1,Trinity_GG_24933_c0_g1_i2,blat.proc3825170.chain_2373	3
scaffold_4	starts_in_intron	10915358	10915358	-	asmbl_42869	none	STRG.4812.2,blat.proc3825150.chain_984	2	STRG.4812.1,blat.proc3825150.chain_985	2
scaffold_10	retained_intron	9041054	9041325	+	asmbl_3360	none	blat.proc3825170.chain_1273	1	STRG.12653.1,blat.proc3825170.chain_1272	2
scaffold_14	retained_intron	5597207	5597301	+	asmbl_12028,asmbl_12029	none	Trinity_GG_26703_c1_g1_i2,blat.proc3825172.chain_1827	2	STRG.17042.1,STRG.17042.2,blat.proc3825172.chain_1824,blat.proc3825172.chain_1830	4
scaffold_1	alt_acceptor	1908447	1908448	+	asmbl_1517,asmbl_1519	none	STRG.119.1,STRG.119.2,blat.proc3825164.chain_172	3	STRG.119.3,blat.proc3825164.chain_170	2
scaffold_8	starts_in_intron	15687283	15687283	-	asmbl_52338	none	Trinity_GG_5873_c0_g1_i1,blat.proc3825152.chain_2799	2	STRG.10571.1,STRG.10571.2,Trinity_GG_5873_c0_g1_i2,Trinity_GG_5873_c0_g1_i3,blat.proc3825152.chain_2798,blat.proc3825152.chain_2800	6
scaffold_17	retained_intron	651449	651532	+	asmbl_18554	none	STRG.19914.2,Trinity_GG_28211_c0_g1_i2,blat.proc3825174.chain_793	3	STRG.19914.1,Trinity_GG_28211_c0_g1_i1,blat.proc3825174.chain_792	3
scaffold_1	ends_in_intron	8754920	8754920	-	asmbl_487	none	STRG.579.5	1	STRG.579.2,STRG.579.4,blat.proc3825148.chain_602,blat.proc3825148.chain_604	4
scaffold_5	starts_in_intron	9655757	9655757	+	asmbl_45627	none	blat.proc3825166.chain_2428	1	STRG.6281.1,STRG.6281.2,blat.proc3825166.chain_2429,blat.proc3825166.chain_2430	4
scaffold_7	alt_donor	2311990	2311991	+	asmbl_49633	none	STRG.8670.3	1	STRG.8670.1,STRG.8670.2,Trinity_GG_22081_c0_g1_i1,blat.proc3825168.chain_1166	4
scaffold_24	alt_donor	3754085	3754086	-	asmbl_32843,asmbl_32845	none	STRG.26576.1,STRG.26576.2,blat.proc3825160.chain_3698	3	Trinity_GG_14862_c0_g1_i5,blat.proc3825160.chain_3696	2
scaffold_1	alt_donor	18339228	18339229	+	asmbl_2553	none	STRG.1292.1,blat.proc3825164.chain_1359	2	STRG.1292.2	1
scaffold_2	alt_donor	10170251	10170252	-	asmbl_23407	none	STRG.2206.3	1	STRG.2206.2,Trinity_GG_1225_c1_g1_i5,blat.proc3825148.chain_2221	3
scaffold_11	retained_exon	8398329	8398702	+	asmbl_5763	none	STRG.13857.3,blat.proc3825170.chain_2394	2	STRG.13857.1,blat.proc3825170.chain_2390,blat.proc3825170.chain_2392	3
scaffold_1	retained_intron	6973087	6973289	+	asmbl_1871	none	blat.proc3825164.chain_648	1	STRG.490.1,blat.proc3825164.chain_645,blat.proc3825164.chain_646,blat.proc3825164.chain_647	4
scaffold_20	alternate_exon	426968	427346	+	asmbl_26353	none	STRG.22745.4,blat.proc3825162.chain_3213	2	STRG.22745.1,STRG.22745.2,STRG.22745.5,Trinity_GG_16850_c4_g1_i1,Trinity_GG_29876_c0_g1_i1,blat.proc3825174.chain_3743,blat.proc3825174.chain_3744	7
scaffold_21	alt_donor	7506483	7506484	-	asmbl_27829,asmbl_27832	none	STRG.24282.1,STRG.24282.4,blat.proc3825160.chain_1439	3	STRG.24282.2	1
scaffold_24	starts_in_intron	2065526	2065526	-	asmbl_32771	none	STRG.26435.2,Trinity_GG_14777_c0_g1_i3,blat.proc3825160.chain_3557	3	STRG.26435.1	1
scaffold_10	alt_acceptor	10809853	10809854	+	asmbl_3442	none	Trinity_GG_24347_c0_g1_i1,blat.proc3825170.chain_1359	2	STRG.12767.1,Trinity_GG_24347_c0_g1_i2,blat.proc3825170.chain_1358	3
scaffold_13	alt_acceptor	5869687	5869688	-	asmbl_9741	none	STRG.15902.1	1	STRG.15902.2,blat.proc3825156.chain_766	2
scaffold_24	alt_acceptor	6449102	6449103	+	asmbl_32309,asmbl_32311,asmbl_32315,asmbl_32316	none	STRG.26699.1,blat.proc3825176.chain_3611,blat.proc3825176.chain_3614,blat.proc3825176.chain_3618,blat.proc3825176.chain_3620	5	STRG.26699.2,blat.proc3825176.chain_3613,blat.proc3825176.chain_3615	3
scaffold_13	starts_in_intron	2294330	2294330	+	asmbl_10587	none	STRG.15546.3,Trinity_GG_25826_c2_g1_i1,blat.proc3825172.chain_249	3	STRG.15546.1,blat.proc3825172.chain_244,blat.proc3825172.chain_245,blat.proc3825172.chain_246	4
scaffold_7	retained_intron	6042028	6042598	-	asmbl_50908,asmbl_50909,asmbl_50911,asmbl_50912	none	STRG.8910.1,STRG.8910.2,STRG.8910.4,STRG.8910.5,Trinity_GG_5061_c0_g1_i13,Trinity_GG_5061_c0_g1_i3,Trinity_GG_5061_c0_g1_i4,blat.proc3825152.chain_1342,blat.proc3825152.chain_1344,blat.proc3825152.chain_1346,blat.proc3825152.chain_1347,blat.proc3825152.chain_1348,blat.proc3825152.chain_1349	13	STRG.8910.3,blat.proc3825152.chain_1341	2
scaffold_17	alt_acceptor	3143098	3143099	-	asmbl_17806	none	STRG.20099.3	1	STRG.20099.1,STRG.20099.2,Trinity_GG_11251_c0_g1_i1,blat.proc3825158.chain_1092	4
scaffold_11	starts_in_intron	4756246	4756246	+	asmbl_5522	none	blat.proc3825170.chain_2118	1	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2116	3
scaffold_10	ends_in_intron	9072371	9072371	+	asmbl_3361,asmbl_3362	none	STRG.12659.3,blat.proc3825170.chain_1292,blat.proc3825170.chain_1293	3	STRG.12659.1,STRG.12659.2	2
scaffold_27	starts_in_intron	1773467	1773467	+	asmbl_36039	none	Trinity_GG_33182_c0_g1_i1	1	STRG.28669.1,STRG.28669.2,Trinity_GG_33182_c0_g1_i2	3
scaffold_6	alt_donor	13734495	13734496	+	asmbl_47532	none	STRG.8126.1,blat.proc3825168.chain_511	2	STRG.8126.2,STRG.8126.3,blat.proc3825168.chain_512	3
scaffold_17	alternate_exon	5064934	5065017	-	asmbl_17907	none	STRG.20229.1,Trinity_GG_11371_c0_g1_i1,blat.proc3825158.chain_1271	3	STRG.20229.2	1
scaffold_5	alt_acceptor	13235104	13235105	+	asmbl_45862,asmbl_45864	none	STRG.6565.2,STRG.6565.3,blat.proc3825166.chain_2741	3	STRG.6565.1,blat.proc3825166.chain_2743	2
scaffold_4	alt_donor	13076300	13076301	+	asmbl_41775	none	STRG.4947.3,blat.proc3825166.chain_1381	2	STRG.4947.1,STRG.4947.2,blat.proc3825166.chain_1379	3
scaffold_20	alternate_exon	507541	507620	+	asmbl_26364	none	STRG.22757.2	1	STRG.22757.1,Trinity_GG_29878_c0_g1_i1,blat.proc3825174.chain_3746	3
scaffold_14	alt_acceptor	9071607	9071608	+	asmbl_12271	none	STRG.17319.1,blat.proc3825172.chain_2081	2	STRG.17319.2,blat.proc3825172.chain_2080	2
scaffold_11	spliced_intron	10398883	10399063	+	asmbl_5941,asmbl_5943	none	STRG.14049.2,blat.proc3825170.chain_2497	2	blat.proc3825170.chain_2499	1
scaffold_25	spliced_intron	6325646	6326095	-	asmbl_34356,asmbl_34357,asmbl_34361,asmbl_34362	none	STRG.27519.1,STRG.27519.2,blat.proc3825162.chain_939,blat.proc3825162.chain_941,blat.proc3825162.chain_942,blat.proc3825162.chain_943	6	Trinity_GG_15459_c0_g2_i1,blat.proc3825162.chain_944	2
scaffold_12	alt_donor	16338959	16338960	+	asmbl_8161	none	STRG.15393.1,blat.proc3825172.chain_105	2	STRG.15393.2,blat.proc3825172.chain_104	2
scaffold_18	alt_acceptor	10132496	10132497	+	asmbl_20902,asmbl_20904	none	STRG.21606.2,blat.proc3825174.chain_2643,blat.proc3825174.chain_2644	3	STRG.21606.1	1
scaffold_3	alternate_exon	19402744	19403194	-	asmbl_39647,asmbl_39649,asmbl_39650,asmbl_39651	none	STRG.4086.1,STRG.4086.2,blat.proc3825150.chain_250,blat.proc3825150.chain_251,blat.proc3825150.chain_252	5	STRG.4086.3	1
scaffold_19	alt_donor	5346626	5346627	-	asmbl_22151	none	STRG.22102.2,blat.proc3825158.chain_2954	2	STRG.22102.3,blat.proc3825158.chain_2957	2
scaffold_4	alternate_exon	18758304	18758471	-	asmbl_43388	none	STRG.5465.3	1	STRG.5465.2	1
scaffold_4	ends_in_intron	15296311	15296311	+	asmbl_41941	none	blat.proc3825166.chain_1528	1	STRG.5125.1,STRG.5125.2,STRG.5125.3,Trinity_GG_20176_c0_g1_i2,blat.proc3825166.chain_1526,blat.proc3825166.chain_1527	6
scaffold_22	retained_intron	26600	26679	+	asmbl_29797	none	STRG.24662.2,Trinity_GG_30926_c0_g1_i1,blat.proc3825176.chain_1754	3	STRG.24662.1,Trinity_GG_30926_c0_g1_i2,Trinity_GG_30926_c0_g1_i4,blat.proc3825176.chain_1755,blat.proc3825176.chain_1756	5
scaffold_10	alternate_exon	17157475	17157529	-	asmbl_5039	none	blat.proc3825154.chain_1756	1	STRG.13164.1,blat.proc3825154.chain_1757	2
scaffold_23	spliced_intron	7984376	7984498	+	asmbl_31745,asmbl_31746,asmbl_31747	none	STRG.26109.1,STRG.26109.2,blat.proc3825176.chain_3062,blat.proc3825176.chain_3063	4	blat.proc3825176.chain_3064	1
scaffold_5	spliced_intron	1504160	1504271	-	asmbl_43852	none	STRG.5708.1,blat.proc3825150.chain_1861,blat.proc3825166.chain_1948	3	STRG.5708.2	1
scaffold_731	retained_intron	2273	2411	+	asmbl_51630	none	STRG.30446.1,Trinity_GG_34145_c0_g1_i1,blat.proc3825178.chain_3500	3	STRG.30446.2	1
scaffold_23	alt_acceptor	7687380	7687381	+	asmbl_31713,asmbl_31714	none	STRG.26090.2,STRG.26090.6,Trinity_GG_31727_c0_g1_i1,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3057	6	STRG.26090.3,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i3,blat.proc3825176.chain_3053,blat.proc3825176.chain_3054	5
scaffold_21	retained_intron	7600965	7601122	+	asmbl_28755	none	STRG.24297.3,blat.proc3825176.chain_1517	2	STRG.24297.2,blat.proc3825176.chain_1516	2
scaffold_13	alternate_exon	1531673	1531722	-	asmbl_9417	none	Trinity_GG_8698_c0_g1_i2,blat.proc3825156.chain_403	2	STRG.15516.2,STRG.15516.3,STRG.15516.4,Trinity_GG_8698_c0_g1_i5,blat.proc3825156.chain_405	5
scaffold_26	starts_in_intron	9314684	9314684	+	asmbl_35223	none	blat.proc3825178.chain_1617	1	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1610,blat.proc3825178.chain_1611,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	8
scaffold_25	alternate_exon	5786576	5788129	+	asmbl_33577,asmbl_33581,asmbl_33582,asmbl_33583	none	STRG.27472.1,STRG.27472.2,STRG.27472.3,blat.proc3825178.chain_583,blat.proc3825178.chain_587	5	Trinity_GG_32454_c0_g1_i5,blat.proc3825178.chain_586	2
scaffold_26	spliced_intron	6663635	6663720	+	asmbl_35101,asmbl_35103	none	STRG.28377.1,STRG.28377.2,blat.proc3825178.chain_1424	3	STRG.28377.3,Trinity_GG_32974_c0_g1_i1,blat.proc3825178.chain_1423	3
scaffold_23	ends_in_intron	2220849	2220849	-	asmbl_30710	none	Trinity_GG_14381_c3_g1_i1,blat.proc3825160.chain_2881	2	STRG.25698.6	1
scaffold_1	alt_donor	14428465	14428466	-	asmbl_921	none	STRG.1045.2,blat.proc3825148.chain_1046	2	STRG.1045.3,blat.proc3825148.chain_1049	2
scaffold_1	retained_intron	4010865	4010976	-	asmbl_174	none	STRG.247.1,blat.proc3825148.chain_143	2	STRG.247.2	1
scaffold_19	starts_in_intron	6238231	6238231	-	asmbl_22198	none	blat.proc3825158.chain_2964	1	STRG.22164.1,blat.proc3825158.chain_2965	2
scaffold_60	spliced_intron	15832	15983	-	asmbl_49457	none	blat.proc3825162.chain_3255	1	blat.proc3825162.chain_3256	1
scaffold_6	spliced_intron	12484088	12484230	+	asmbl_47404,asmbl_47406	none	STRG.8007.2,STRG.8007.4,Trinity_GG_21697_c0_g1_i1,Trinity_GG_21697_c0_g1_i2,blat.proc3825168.chain_460,blat.proc3825168.chain_461	6	STRG.8007.1,STRG.8007.3,Trinity_GG_21697_c0_g1_i3,blat.proc3825168.chain_462	4
scaffold_23	retained_exon	8199528	8199703	+	asmbl_31763,asmbl_31767,asmbl_31768	none	STRG.26129.1,STRG.26129.2,blat.proc3825176.chain_3003,blat.proc3825176.chain_3004	4	blat.proc3825176.chain_3002	1
scaffold_2	spliced_intron	1322435	1322697	+	asmbl_24186	none	STRG.1595.5	1	STRG.1595.4,Trinity_GG_18243_c0_g1_i1,blat.proc3825164.chain_1793	3
scaffold_10	alternate_exon	1489827	1493587	-	asmbl_4067	none	STRG.12025.3	1	Trinity_GG_6656_c0_g1_i6,blat.proc3825154.chain_516	2
scaffold_9	alternate_exon	10904381	10904398	+	asmbl_54305	none	STRG.11402.1	1	blat.proc3825170.chain_101	1
scaffold_11	spliced_intron	13033062	13033309	-	asmbl_7112,asmbl_7113,asmbl_7114,asmbl_7115	none	STRG.14179.1,STRG.14179.2,STRG.14179.3,Trinity_GG_7948_c0_g1_i1,blat.proc3825154.chain_2754,blat.proc3825154.chain_2756,blat.proc3825154.chain_2757,blat.proc3825154.chain_2758	8	blat.proc3825154.chain_2755	1
scaffold_2	spliced_intron	5440602	5440687	+	asmbl_24419	none	STRG.1953.2,blat.proc3825164.chain_2074	2	STRG.1953.1,blat.proc3825164.chain_2075	2
scaffold_3	retained_intron	5951042	5951165	-	asmbl_38884,asmbl_38886,asmbl_38887	none	STRG.3259.2,blat.proc3825148.chain_3161,blat.proc3825148.chain_3163	3	STRG.3259.1,STRG.3259.3,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3164,blat.proc3825148.chain_3165	6
scaffold_5	retained_intron	14261743	14261868	+	asmbl_45913	none	Trinity_GG_20907_c0_g1_i8,blat.proc3825166.chain_2787	2	STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2783,blat.proc3825166.chain_2786,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	6
scaffold_9	spliced_intron	3375064	3375256	+	asmbl_53892,asmbl_53893	none	STRG.10943.1,blat.proc3825168.chain_3418,blat.proc3825168.chain_3420	3	blat.proc3825168.chain_3419	1
scaffold_2	alt_acceptor	33461	33462	+	asmbl_24063,asmbl_24064,asmbl_24067,asmbl_24068	none	STRG.1496.1,STRG.1496.3,STRG.1496.4,Trinity_GG_18174_c0_g1_i9,blat.proc3825164.chain_1639	5	STRG.1496.5,blat.proc3825164.chain_1645	2
scaffold_14	ends_in_intron	150668	150668	-	asmbl_12782,asmbl_12783	none	STRG.16711.5,STRG.16711.6	2	STRG.16711.2,blat.proc3825156.chain_1518	2
scaffold_15	spliced_intron	12435740	12435952	+	asmbl_15567,asmbl_15568,asmbl_15572	none	blat.proc3825172.chain_3337,blat.proc3825172.chain_3339,blat.proc3825172.chain_3341	3	blat.proc3825172.chain_3335	1
scaffold_8	skipped_exon	9532175	9533624	+	asmbl_53084	none	STRG.10212.1	1	STRG.10212.2,Trinity_GG_22988_c0_g1_i1,Trinity_GG_22988_c1_g1_i1,blat.proc3825168.chain_2763,blat.proc3825168.chain_2764	5
scaffold_5	retained_exon	8132682	8132807	+	asmbl_45529	none	STRG.6188.2,blat.proc3825166.chain_2392	2	STRG.6188.1,blat.proc3825166.chain_2391	2
scaffold_4	alternate_exon	5035717	5045715	-	asmbl_42552	none	STRG.4399.3	1	Trinity_GG_2462_c0_g1_i1,blat.proc3825150.chain_630	2
scaffold_1	skipped_exon	7374398	7376636	-	asmbl_435	none	STRG.528.2	1	STRG.528.3,STRG.528.4,blat.proc3825148.chain_512	3
scaffold_1	alternate_exon	14194536	14194741	-	asmbl_873	none	blat.proc3825148.chain_970	1	STRG.1005.1,blat.proc3825148.chain_968,blat.proc3825148.chain_969,blat.proc3825148.chain_971	4
scaffold_21	retained_intron	7508385	7508701	-	asmbl_27836	none	STRG.24283.2	1	STRG.24283.1,blat.proc3825160.chain_1432	2
scaffold_21	starts_in_intron	11371581	11371581	-	asmbl_28128	none	blat.proc3825160.chain_1777	1	blat.proc3825160.chain_1774,blat.proc3825160.chain_1775	2
scaffold_15	retained_intron	9817941	9818374	+	asmbl_15415,asmbl_15420	none	STRG.18497.3,Trinity_GG_27412_c0_g1_i2,blat.proc3825172.chain_3080,blat.proc3825172.chain_3084	4	STRG.18497.1,STRG.18497.2,blat.proc3825172.chain_3081,blat.proc3825172.chain_3082	4
scaffold_19	retained_intron	165632	165684	+	asmbl_21179	none	STRG.21830.1,Trinity_GG_29406_c0_g1_i2,blat.proc3825174.chain_2910	3	STRG.21830.2	1
scaffold_20	alt_donor	11574972	11574973	-	asmbl_26160	none	STRG.23664.2	1	STRG.23664.1,STRG.23664.3,STRG.23664.4,blat.proc3825160.chain_730,blat.proc3825160.chain_731	5
scaffold_14	ends_in_intron	2129616	2129616	-	asmbl_12921	none	Trinity_GG_9442_c0_g2_i1,blat.proc3825156.chain_1674	2	STRG.16836.1,blat.proc3825156.chain_1673	2
scaffold_12	ends_in_intron	2722049	2722049	+	asmbl_7518	none	blat.proc3825170.chain_3080	1	Trinity_GG_25344_c0_g1_i4,Trinity_GG_25344_c0_g1_i5,blat.proc3825170.chain_3075,blat.proc3825170.chain_3078	4
scaffold_1	alt_donor	11763024	11763025	+	asmbl_2146,asmbl_2148,asmbl_2149	none	STRG.802.1,STRG.802.3,blat.proc3825164.chain_982,blat.proc3825164.chain_983	4	STRG.802.2	1
scaffold_14	starts_in_intron	1131481	1131481	-	asmbl_12863	none	Trinity_GG_9403_c0_g1_i1,blat.proc3825156.chain_1609	2	STRG.16777.1,STRG.16777.2,Trinity_GG_9403_c0_g1_i2,Trinity_GG_9403_c0_g1_i3,blat.proc3825156.chain_1608,blat.proc3825156.chain_1610	6
scaffold_15	spliced_intron	4232612	4232777	+	asmbl_15128,asmbl_15129,asmbl_15131,asmbl_15132,asmbl_15133,asmbl_15134,asmbl_15135	none	STRG.18172.1,STRG.18172.2,blat.proc3825172.chain_2836,blat.proc3825172.chain_2837,blat.proc3825172.chain_2838,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842,blat.proc3825172.chain_2843	9	Trinity_GG_27280_c0_g1_i7,blat.proc3825172.chain_2844	2
scaffold_9	spliced_intron	11815672	11815756	+	asmbl_54382	none	STRG.11498.1,blat.proc3825170.chain_315	2	Trinity_GG_23726_c0_g1_i5,blat.proc3825170.chain_317	2
scaffold_19	retained_exon	12337504	12337857	+	asmbl_21788	none	STRG.22564.1,blat.proc3825174.chain_3511	2	blat.proc3825174.chain_3510	1
scaffold_26	alt_acceptor	6722077	6722078	+	asmbl_35109	none	STRG.28365.3	1	STRG.28365.1,blat.proc3825178.chain_1439	2
scaffold_20	spliced_intron	8578419	8578764	-	asmbl_25998	none	STRG.23410.1,blat.proc3825160.chain_396	2	blat.proc3825160.chain_397	1
scaffold_15	skipped_exon	15855759	15857174	+	asmbl_15822,asmbl_15825,asmbl_15828,asmbl_15829	none	STRG.18973.4,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i7,blat.proc3825172.chain_3568,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575,blat.proc3825172.chain_3577	7	STRG.18973.1,STRG.18973.2,STRG.18973.3,STRG.18973.5,Trinity_GG_27688_c0_g1_i10,Trinity_GG_27688_c0_g1_i12,Trinity_GG_27688_c0_g1_i5,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3569,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3576,blat.proc3825172.chain_3578	13
scaffold_8	ends_in_intron	15686051	15686051	-	asmbl_52339	none	Trinity_GG_5873_c0_g1_i3,blat.proc3825152.chain_2798	2	STRG.10571.1,STRG.10571.2,Trinity_GG_5873_c0_g1_i1,Trinity_GG_5873_c0_g1_i2,blat.proc3825152.chain_2799,blat.proc3825152.chain_2800	6
scaffold_5	spliced_intron	14732517	14732623	-	asmbl_44614,asmbl_44617	none	STRG.6676.1,blat.proc3825150.chain_2844,blat.proc3825150.chain_2845	3	Trinity_GG_3740_c0_g1_i1,blat.proc3825150.chain_2846	2
scaffold_8	starts_in_intron	10239359	10239359	+	asmbl_53163	none	STRG.10282.3	1	STRG.10282.1,STRG.10282.2,blat.proc3825168.chain_2729,blat.proc3825168.chain_2731,blat.proc3825168.chain_2733	5
scaffold_17	starts_in_intron	13072768	13072768	-	asmbl_18348	none	blat.proc3825158.chain_1805	1	STRG.20802.1,STRG.20802.2,blat.proc3825158.chain_1806	3
scaffold_12	spliced_intron	3326235	3326361	-	asmbl_8353	none	STRG.14554.1,blat.proc3825154.chain_3022	2	STRG.14554.2,blat.proc3825154.chain_3023	2
scaffold_1	alt_donor	3270357	3270358	-	asmbl_143	none	STRG.204.4	1	STRG.204.1,blat.proc3825148.chain_203,blat.proc3825148.chain_204	3
scaffold_2	skipped_exon	3862130	3864995	-	asmbl_23008	none	STRG.1823.2	1	STRG.1823.1,blat.proc3825148.chain_1750	2
scaffold_1	starts_in_intron	14610764	14610764	+	asmbl_2404	none	blat.proc3825164.chain_1231	1	STRG.1061.1,STRG.1061.2,blat.proc3825164.chain_1229,blat.proc3825164.chain_1230	4
scaffold_5	alt_acceptor	18178813	18178814	+	asmbl_46207,asmbl_46208	none	STRG.6956.2,STRG.6956.3,Trinity_GG_21146_c1_g1_i4,blat.proc3825166.chain_3178,blat.proc3825166.chain_3180	5	STRG.6956.1	1
scaffold_24	retained_exon	4284977	4285033	-	asmbl_32867	none	STRG.26588.2	1	STRG.26588.1,blat.proc3825160.chain_3666	2
scaffold_15	retained_exon	15184893	15185114	+	asmbl_15725,asmbl_15727,asmbl_15728,asmbl_15729,asmbl_15730,asmbl_15731,asmbl_15732,asmbl_15734,asmbl_15735,asmbl_15739,asmbl_15741,asmbl_15742	none	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3519,blat.proc3825172.chain_3520,blat.proc3825172.chain_3522,blat.proc3825172.chain_3523,blat.proc3825172.chain_3524,blat.proc3825172.chain_3526,blat.proc3825172.chain_3527,blat.proc3825172.chain_3529,blat.proc3825172.chain_3530,blat.proc3825172.chain_3531,blat.proc3825172.chain_3532,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535	16	blat.proc3825172.chain_3525,blat.proc3825172.chain_3528,blat.proc3825172.chain_3536	3
scaffold_24	alt_donor	3391854	3391855	-	asmbl_32825	none	STRG.26536.2	1	STRG.26536.1	1
scaffold_19	spliced_intron	13220754	13221798	-	asmbl_22609,asmbl_22610,asmbl_22615,asmbl_22619,asmbl_22621,asmbl_22622	none	STRG.22653.1,STRG.22653.2,Trinity_GG_12588_c1_g1_i13,Trinity_GG_12588_c1_g1_i4,blat.proc3825158.chain_3428,blat.proc3825158.chain_3429,blat.proc3825158.chain_3430,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3435	10	blat.proc3825158.chain_3432,blat.proc3825158.chain_3436	2
scaffold_4	starts_in_intron	4910277	4910277	+	asmbl_41315	none	Trinity_GG_19752_c0_g1_i2,blat.proc3825166.chain_865	2	STRG.4387.1,STRG.4387.2,blat.proc3825166.chain_866	3
scaffold_17	alt_acceptor	12221332	12221333	-	asmbl_18320	none	STRG.20758.1,blat.proc3825158.chain_1699	2	STRG.20758.2	1
scaffold_5	spliced_intron	19145546	19145630	-	asmbl_44895,asmbl_44897	none	STRG.7027.1,STRG.7027.2,blat.proc3825150.chain_3122	3	blat.proc3825150.chain_3121	1
scaffold_19	retained_exon	12958036	12958121	-	asmbl_22568	none	STRG.22612.1	1	Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3404	4
scaffold_8	skipped_exon	16040106	16040586	-	asmbl_52352	none	STRG.10585.2,blat.proc3825152.chain_2822	2	STRG.10585.1,blat.proc3825152.chain_2823	2
scaffold_13	ends_in_intron	7501258	7501258	-	asmbl_9881	none	Trinity_GG_9001_c0_g1_i7,blat.proc3825156.chain_907	2	STRG.16047.1,STRG.16047.2,STRG.16047.3,STRG.16047.4,blat.proc3825156.chain_899,blat.proc3825156.chain_900,blat.proc3825156.chain_901,blat.proc3825156.chain_902,blat.proc3825156.chain_903,blat.proc3825156.chain_904,blat.proc3825156.chain_905,blat.proc3825156.chain_906,blat.proc3825156.chain_908,blat.proc3825156.chain_909	14
scaffold_7	alternate_exon	8316679	8323215	-	asmbl_50999	none	STRG.9070.4,Trinity_GG_5073_c5_g1_i1,blat.proc3825152.chain_1376	3	STRG.9070.2,STRG.9070.3,blat.proc3825152.chain_1372,blat.proc3825152.chain_1373	4
scaffold_5	retained_exon	2175608	2175728	-	asmbl_43874,asmbl_43876	none	STRG.5754.1,STRG.5754.2,blat.proc3825150.chain_1989	3	STRG.5754.3	1
scaffold_19	alt_acceptor	12232496	12232497	+	asmbl_21765	none	STRG.22547.2,Trinity_GG_29789_c0_g1_i1,blat.proc3825174.chain_3578	3	STRG.22547.1	1
scaffold_7	alt_donor	12650577	12650578	-	asmbl_51259	none	STRG.9385.1,blat.proc3825152.chain_1733	2	STRG.9385.3	1
scaffold_14	spliced_intron	3152638	3152817	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11913,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11923,asmbl_11924	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i11,Trinity_GG_26576_c0_g1_i12,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1601,blat.proc3825172.chain_1602,blat.proc3825172.chain_1604,blat.proc3825172.chain_1605,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	19	blat.proc3825172.chain_1603	1
scaffold_13	ends_in_intron	8909402	8909402	+	asmbl_11162	none	Trinity_GG_26201_c0_g1_i2	1	STRG.16165.1,STRG.16165.2,Trinity_GG_26201_c0_g1_i6,blat.proc3825172.chain_955,blat.proc3825172.chain_959	5
scaffold_6	alt_acceptor	78358	78359	-	asmbl_48018	none	STRG.7072.2	1	STRG.7072.1,STRG.7072.3,STRG.7072.4	3
scaffold_16	retained_intron	10448911	10449544	+	asmbl_16535,asmbl_16537	none	STRG.19614.3,Trinity_GG_28027_c0_g1_i3,blat.proc3825174.chain_485,blat.proc3825174.chain_488	4	STRG.19614.1,Trinity_GG_28027_c0_g1_i1,blat.proc3825174.chain_486,blat.proc3825174.chain_489	4
scaffold_18	alternate_exon	9634957	9635252	-	asmbl_20067,asmbl_20068	none	STRG.21576.2,blat.proc3825158.chain_2481	2	STRG.21576.1,blat.proc3825158.chain_2478	2
scaffold_18	starts_in_intron	7172411	7172411	-	asmbl_19928	none	blat.proc3825158.chain_2334	1	STRG.21417.1,STRG.21417.2,STRG.21417.3,Trinity_GG_11987_c0_g1_i3,Trinity_GG_11987_c0_g1_i5,blat.proc3825158.chain_2333,blat.proc3825158.chain_2335	7
scaffold_4	retained_intron	5648812	5649001	-	asmbl_42622,asmbl_42629,asmbl_42631	none	Trinity_GG_2475_c1_g1_i2,blat.proc3825150.chain_671,blat.proc3825150.chain_673,blat.proc3825150.chain_674	4	STRG.4472.1,blat.proc3825150.chain_669	2
scaffold_17	spliced_intron	9942619	9942696	+	asmbl_19128,asmbl_19129,asmbl_19130	none	STRG.20612.1,Trinity_GG_28597_c0_g1_i2,Trinity_GG_28597_c0_g1_i3,blat.proc3825174.chain_1468,blat.proc3825174.chain_1469,blat.proc3825174.chain_1471	6	blat.proc3825174.chain_1470,blat.proc3825174.chain_1472	2
scaffold_19	skipped_exon	4792260	4793390	-	asmbl_22129	none	STRG.22056.1,blat.proc3825158.chain_2887	2	STRG.22056.2,blat.proc3825158.chain_2885	2
scaffold_10	starts_in_intron	4261010	4261010	+	asmbl_3115	none	STRG.12264.2	1	STRG.12264.1	1
scaffold_4	alt_acceptor	5651946	5651947	-	asmbl_42616,asmbl_42618,asmbl_42620,asmbl_42621,asmbl_42625,asmbl_42627	none	STRG.4472.1,STRG.4472.2,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_665,blat.proc3825150.chain_666,blat.proc3825150.chain_667,blat.proc3825150.chain_668	9	Trinity_GG_2475_c0_g1_i10,blat.proc3825150.chain_661	2
scaffold_12	alt_acceptor	4613096	4613097	-	asmbl_8420	none	STRG.14639.4	1	STRG.14639.1,STRG.14639.2,blat.proc3825154.chain_3136,blat.proc3825154.chain_3138,blat.proc3825154.chain_3139,blat.proc3825154.chain_3140,blat.proc3825154.chain_3142	7
scaffold_14	starts_in_intron	1325790	1325790	+	asmbl_11819	none	STRG.16784.2	1	STRG.16784.1,blat.proc3825172.chain_1576	2
scaffold_1	spliced_intron	4386393	4386813	-	asmbl_186	none	STRG.269.1,blat.proc3825148.chain_147	2	STRG.269.2,Trinity_GG_92_c0_g1_i1,blat.proc3825148.chain_148	3
scaffold_2	alt_donor	16420871	16420872	-	asmbl_23691,asmbl_23694	none	STRG.2587.3,blat.proc3825148.chain_2559	2	STRG.2587.1,STRG.2587.2,blat.proc3825148.chain_2556,blat.proc3825148.chain_2558	4
scaffold_8	retained_intron	12626109	12626425	-	asmbl_52214,asmbl_52215	none	blat.proc3825152.chain_2675,blat.proc3825152.chain_2676	2	STRG.10437.1,blat.proc3825152.chain_2673,blat.proc3825152.chain_2674	3
scaffold_6	alt_donor	13060362	13060363	-	asmbl_48870,asmbl_48872	none	STRG.8063.1,STRG.8063.2,blat.proc3825152.chain_455	3	STRG.8063.4	1
scaffold_6	starts_in_intron	18691033	18691033	+	asmbl_47842	none	Trinity_GG_22011_c0_g2_i1,blat.proc3825168.chain_1010	2	STRG.8537.1,STRG.8537.2,Trinity_GG_22011_c0_g1_i1,blat.proc3825168.chain_1009	4
scaffold_9	starts_in_intron	6423084	6423084	-	asmbl_55057	none	STRG.11177.2,blat.proc3825152.chain_3419	2	STRG.11177.1,Trinity_GG_6195_c1_g1_i1,blat.proc3825152.chain_3420	3
scaffold_7	spliced_intron	8518033	8520452	+	asmbl_50012	none	STRG.9083.2	1	STRG.9083.1,blat.proc3825168.chain_1566	2
scaffold_18	spliced_intron	11296913	11297076	-	asmbl_20129,asmbl_20130	none	STRG.21674.1,STRG.21674.2,blat.proc3825158.chain_2566,blat.proc3825158.chain_2568	4	Trinity_GG_12116_c0_g1_i4,blat.proc3825158.chain_2567	2
scaffold_25	alt_acceptor	690827	690828	+	asmbl_33351	none	STRG.27123.1	1	STRG.27123.2,blat.proc3825178.chain_238	2
scaffold_4	alternate_exon	16873536	16874556	-	asmbl_43225,asmbl_43227	none	STRG.5273.1,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	3	STRG.5273.3,STRG.5273.4	2
scaffold_13	starts_in_intron	3098995	3098995	-	asmbl_9517	none	blat.proc3825156.chain_459	1	STRG.15617.1,STRG.15617.2,blat.proc3825156.chain_460	3
scaffold_8	ends_in_intron	18543047	18543047	+	asmbl_53565,asmbl_53566	none	STRG.10751.2,blat.proc3825168.chain_3273	2	STRG.10751.1,STRG.10751.3,Trinity_GG_23268_c0_g1_i3,blat.proc3825168.chain_3270,blat.proc3825168.chain_3271,blat.proc3825168.chain_3272	6
scaffold_26	alternate_exon	5862761	5862800	+	asmbl_35051	none	STRG.28294.2	1	STRG.28294.1,blat.proc3825178.chain_1390,blat.proc3825178.chain_1391	3
scaffold_7	alt_acceptor	688486	688487	+	asmbl_49556,asmbl_49558	none	STRG.8604.1,STRG.8604.4,blat.proc3825168.chain_1104	3	STRG.8604.3	1
scaffold_126	alt_acceptor	3316	3317	+	asmbl_9275	none	STRG.30164.1,blat.proc3825178.chain_3284	2	STRG.30164.2	1
scaffold_4	retained_exon	16433906	16434069	-	asmbl_43171,asmbl_43172	none	STRG.5219.2,STRG.5219.3	2	STRG.5219.1	1
scaffold_17	alt_acceptor	3142991	3142992	-	asmbl_17804,asmbl_17805	none	STRG.20099.1,STRG.20099.2,Trinity_GG_11251_c0_g1_i1,blat.proc3825158.chain_1092	4	STRG.20099.3	1
scaffold_24	spliced_intron	7721535	7721612	-	asmbl_33051	none	STRG.26818.1,blat.proc3825162.chain_195	2	blat.proc3825162.chain_196	1
scaffold_13	starts_in_intron	5337437	5337437	+	asmbl_10838	none	Trinity_GG_26020_c0_g1_i2,blat.proc3825172.chain_577	2	STRG.15832.1,STRG.15832.2,blat.proc3825172.chain_578,blat.proc3825172.chain_579,blat.proc3825172.chain_580	5
scaffold_6	alt_acceptor	12520208	12520209	-	asmbl_48817	none	STRG.8011.3	1	STRG.8011.1,STRG.8011.2,STRG.8011.4,blat.proc3825152.chain_396,blat.proc3825152.chain_397,blat.proc3825152.chain_398	6
scaffold_8	ends_in_intron	11959059	11959059	+	asmbl_53299	none	blat.proc3825168.chain_2962	1	STRG.10400.1	1
scaffold_1	spliced_intron	8643816	8644313	-	asmbl_466,asmbl_468,asmbl_471,asmbl_472	none	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_585,blat.proc3825148.chain_586	5	blat.proc3825148.chain_581,blat.proc3825148.chain_584	2
scaffold_26	ends_in_intron	6659336	6659336	+	asmbl_35100	none	blat.proc3825178.chain_1446	1	STRG.28376.1,blat.proc3825178.chain_1443,blat.proc3825178.chain_1445,blat.proc3825178.chain_1447	4
scaffold_3	retained_intron	6049629	6049714	-	asmbl_38881	none	STRG.3259.7	1	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.6,Trinity_GG_1752_c0_g1_i1,blat.proc3825148.chain_3087,blat.proc3825148.chain_3088	7
scaffold_23	alt_acceptor	10739096	10739097	-	asmbl_31152	none	STRG.26265.1,blat.proc3825160.chain_3343	2	STRG.26265.2,blat.proc3825160.chain_3344	2
scaffold_21	alternate_exon	830866	834853	+	asmbl_28313	none	blat.proc3825176.chain_910	1	STRG.23777.3	1
scaffold_20	alternate_exon	425595	426290	+	asmbl_26352	none	STRG.22745.2	1	STRG.22745.4,STRG.22745.5,blat.proc3825162.chain_3213,blat.proc3825174.chain_3744	4
scaffold_4	retained_intron	1441879	1442446	-	asmbl_42376	none	STRG.4179.1,Trinity_GG_2335_c0_g2_i1,blat.proc3825150.chain_419	3	STRG.4179.2	1
scaffold_25	starts_in_intron	101181	101181	+	asmbl_33315	none	blat.proc3825178.chain_245	1	STRG.27044.1,Trinity_GG_32253_c0_g1_i2,blat.proc3825178.chain_244	3
scaffold_4	alt_donor	4433998	4433999	+	asmbl_41268,asmbl_41270	none	STRG.4342.2,STRG.4342.4,blat.proc3825166.chain_792	3	STRG.4342.3	1
scaffold_3	alt_acceptor	1032790	1032791	+	asmbl_39823	none	STRG.2927.1,blat.proc3825164.chain_3178	2	STRG.2927.2	1
scaffold_18	starts_in_intron	5915028	5915028	-	asmbl_19885	none	Trinity_GG_11903_c0_g1_i2,blat.proc3825158.chain_2206	2	STRG.21345.1,Trinity_GG_11903_c0_g1_i1,blat.proc3825158.chain_2207	3
scaffold_2	ends_in_intron	3349496	3349496	-	asmbl_22975	none	Trinity_GG_959_c0_g1_i3,blat.proc3825148.chain_1714	2	STRG.1776.1,STRG.1776.2	2
scaffold_8	retained_intron	9819500	9819912	+	asmbl_53110	none	STRG.10229.4,Trinity_GG_22998_c0_g1_i1,blat.proc3825168.chain_2783	3	STRG.10229.3,Trinity_GG_22998_c0_g2_i3,blat.proc3825168.chain_2787	3
scaffold_13	starts_in_intron	2272061	2272061	-	asmbl_9440,asmbl_9441,asmbl_9442,asmbl_9443	none	Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_397,blat.proc3825156.chain_400	8	STRG.15548.1,STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_396,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9
scaffold_5	ends_in_intron	4773495	4773495	-	asmbl_44010	none	Trinity_GG_3345_c0_g1_i2,blat.proc3825150.chain_2141	2	STRG.5941.1,STRG.5941.3,STRG.5941.4	3
scaffold_7	spliced_intron	1387124	1387457	-	asmbl_50718,asmbl_50721,asmbl_50722,asmbl_50724,asmbl_50725	none	STRG.8652.1,STRG.8652.2,blat.proc3825152.chain_1117,blat.proc3825152.chain_1118,blat.proc3825152.chain_1123,blat.proc3825152.chain_1124	6	blat.proc3825152.chain_1119	1
scaffold_5	alt_acceptor	2327399	2327400	-	asmbl_43888	none	STRG.5761.2	1	STRG.5761.1,blat.proc3825150.chain_1991	2
scaffold_3	spliced_intron	13179592	13179723	+	asmbl_40434,asmbl_40436,asmbl_40437	none	STRG.3682.1,blat.proc3825166.chain_163,blat.proc3825166.chain_166	3	blat.proc3825166.chain_165	1
scaffold_4	alt_donor	6283127	6283128	-	asmbl_42671	none	Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_778	2	Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,blat.proc3825150.chain_777,blat.proc3825150.chain_780	4
scaffold_4	spliced_intron	4121063	4121376	-	asmbl_42496,asmbl_42500	none	STRG.4329.1,STRG.4329.2,blat.proc3825150.chain_593	3	STRG.4329.3,Trinity_GG_2440_c0_g1_i3,blat.proc3825150.chain_594,blat.proc3825150.chain_595	4
scaffold_25	alt_donor	6026119	6026120	-	asmbl_34304	none	STRG.27505.2	1	STRG.27505.1	1
scaffold_14	alt_donor	8756732	8756733	-	asmbl_13346	none	STRG.17312.2	1	STRG.17312.1,blat.proc3825156.chain_2095	2
scaffold_13	spliced_intron	2571207	2571311	+	asmbl_10624,asmbl_10629	none	STRG.15563.3,Trinity_GG_25871_c0_g1_i5,blat.proc3825172.chain_322,blat.proc3825172.chain_327	4	STRG.15563.1,STRG.15563.2,Trinity_GG_25871_c0_g1_i4,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_323,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_326	8
scaffold_2	ends_in_intron	13398873	13398873	+	asmbl_24841,asmbl_24845	none	blat.proc3825164.chain_2562,blat.proc3825164.chain_2564	2	STRG.2359.3,Trinity_GG_18642_c0_g1_i5,blat.proc3825164.chain_2559,blat.proc3825164.chain_2561	4
scaffold_17	alt_donor	682846	682847	-	asmbl_17645	none	blat.proc3825158.chain_962	1	STRG.19921.2	1
scaffold_12	alt_acceptor	10187622	10187623	-	asmbl_8734,asmbl_8736	none	STRG.14994.4,blat.proc3825154.chain_3518	2	STRG.14994.1,STRG.14994.2,STRG.14994.3,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516,blat.proc3825154.chain_3517,blat.proc3825154.chain_3520	8
scaffold_12	alt_donor	9231567	9231568	-	asmbl_8661,asmbl_8663,asmbl_8664,asmbl_8666,asmbl_8667	none	STRG.14939.1,STRG.14939.2,STRG.14939.3,Trinity_GG_8336_c0_g1_i18,blat.proc3825154.chain_3447,blat.proc3825154.chain_3448,blat.proc3825154.chain_3450,blat.proc3825154.chain_3457,blat.proc3825154.chain_3458	9	STRG.14939.4	1
scaffold_3	retained_exon	17083237	17083321	-	asmbl_39534	none	STRG.3946.1	1	STRG.3946.2	1
scaffold_23	starts_in_intron	3511314	3511314	-	asmbl_30803	none	blat.proc3825160.chain_2974	1	STRG.25774.1,STRG.25774.2,blat.proc3825160.chain_2975,blat.proc3825160.chain_2978,blat.proc3825160.chain_2979	5
scaffold_2	alt_acceptor	3884036	3884037	-	asmbl_23010	none	STRG.1821.1,blat.proc3825148.chain_1757	2	STRG.1821.2,blat.proc3825148.chain_1756	2
scaffold_20	alternate_exon	7808066	7808222	-	asmbl_25922	none	STRG.23331.1,blat.proc3825160.chain_453	2	STRG.23331.2,blat.proc3825160.chain_454	2
scaffold_2	spliced_intron	16280381	16280649	+	asmbl_25105,asmbl_25107	none	STRG.2566.1,Trinity_GG_18728_c0_g1_i10,blat.proc3825164.chain_2769	3	blat.proc3825164.chain_2775	1
scaffold_15	alternate_exon	1681862	1681947	+	asmbl_15026	none	STRG.17972.2	1	STRG.17972.1	1
scaffold_11	alternate_exon	8430913	8430957	+	asmbl_5776,asmbl_5778	none	STRG.13861.2,Trinity_GG_24892_c0_g1_i3,blat.proc3825170.chain_2299	3	STRG.13861.1,Trinity_GG_24892_c0_g2_i1,blat.proc3825170.chain_2305	3
scaffold_7	spliced_intron	4544285	4544372	+	asmbl_49744,asmbl_49746,asmbl_49747	none	STRG.8829.1,blat.proc3825168.chain_1298,blat.proc3825168.chain_1299,blat.proc3825168.chain_1300	4	blat.proc3825168.chain_1301	1
scaffold_15	alt_acceptor	4984104	4984105	-	asmbl_14179,asmbl_14181,asmbl_14184,asmbl_14185	none	STRG.18211.1,STRG.18211.5,blat.proc3825156.chain_3069,blat.proc3825156.chain_3070,blat.proc3825156.chain_3072	5	STRG.18211.3,STRG.18211.4	2
scaffold_27	alt_acceptor	9099751	9099752	+	asmbl_36501,asmbl_36502,asmbl_36503,asmbl_36506	none	STRG.29163.1,STRG.29163.2,blat.proc3825178.chain_2361,blat.proc3825178.chain_2362,blat.proc3825178.chain_2365	5	blat.proc3825178.chain_2363,blat.proc3825178.chain_2364	2
scaffold_21	spliced_intron	1054388	1054575	-	asmbl_27374,asmbl_27377,asmbl_27379,asmbl_27382	none	STRG.23787.1,STRG.23787.4,Trinity_GG_13262_c0_g1_i1,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922,blat.proc3825160.chain_925	6	Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_926	2
scaffold_25	alternate_exon	443177	443279	+	asmbl_33334	none	STRG.27092.1	1	STRG.27092.2	1
scaffold_23	alternate_exon	7405980	7406045	+	asmbl_31695	none	STRG.26061.2	1	STRG.26061.1,STRG.26061.3	2
scaffold_15	alternate_exon	7436230	7437363	-	asmbl_14297,asmbl_14298	none	STRG.18342.2,STRG.18342.3,Trinity_GG_10314_c1_g1_i2,blat.proc3825156.chain_3188,blat.proc3825156.chain_3190,blat.proc3825156.chain_3191	6	STRG.18342.1,blat.proc3825156.chain_3187	2
scaffold_14	alt_acceptor	8695879	8695880	-	asmbl_13340	none	blat.proc3825156.chain_2146	1	STRG.17305.2,blat.proc3825156.chain_2144	2
scaffold_9	alt_acceptor	18389543	18389544	+	asmbl_54662	none	STRG.11879.2,blat.proc3825170.chain_645	2	STRG.11879.1,STRG.11879.3	2
scaffold_3	retained_intron	19029164	19029934	-	asmbl_39637	none	blat.proc3825150.chain_277	1	blat.proc3825150.chain_275,blat.proc3825150.chain_276	2
scaffold_11	retained_exon	6591304	6591394	-	asmbl_6724,asmbl_6725	none	STRG.13705.1,blat.proc3825154.chain_2268,blat.proc3825154.chain_2269	3	STRG.13705.2	1
scaffold_14	retained_exon	1721212	1721487	+	asmbl_11834	none	STRG.16818.2,Trinity_GG_26556_c0_g1_i2,blat.proc3825172.chain_1572	3	STRG.16818.1,Trinity_GG_26556_c0_g1_i1,blat.proc3825172.chain_1573	3
scaffold_26	ends_in_intron	5041009	5041009	+	asmbl_34939	none	blat.proc3825178.chain_1185	1	STRG.28240.1,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180	8
scaffold_2	alternate_exon	6085161	6090692	-	asmbl_23173	none	STRG.1980.1,Trinity_GG_1051_c0_g1_i2,blat.proc3825148.chain_1868	3	STRG.1980.2,Trinity_GG_1051_c0_g1_i5,blat.proc3825148.chain_1870	3
scaffold_16	alt_acceptor	10486642	10486643	+	asmbl_16544	none	STRG.19619.2	1	STRG.19619.1	1
scaffold_23	spliced_intron	10938115	10938227	-	asmbl_31177	none	STRG.26299.3	1	Trinity_GG_14694_c0_g1_i2,Trinity_GG_14694_c0_g1_i3,Trinity_GG_14694_c0_g1_i4	3
scaffold_25	alt_acceptor	7921243	7921244	-	asmbl_34417	none	STRG.27624.2	1	STRG.27624.1	1
scaffold_3	spliced_intron	13327018	13327170	-	asmbl_39247	none	STRG.3680.1,Trinity_GG_2014_c0_g1_i2,blat.proc3825148.chain_3553	3	STRG.3680.2,Trinity_GG_2014_c0_g1_i1,blat.proc3825148.chain_3554	3
scaffold_13	spliced_intron	2334729	2334862	+	asmbl_10598,asmbl_10604,asmbl_10611	none	STRG.15564.2,STRG.15564.4,STRG.15564.6,blat.proc3825172.chain_222	4	STRG.15564.7	1
scaffold_18	spliced_intron	823178	823278	+	asmbl_20326,asmbl_20327,asmbl_20329	none	STRG.21008.1,STRG.21008.2,blat.proc3825174.chain_1871,blat.proc3825174.chain_1872,blat.proc3825174.chain_1873	5	blat.proc3825174.chain_1874	1
scaffold_2	spliced_intron	14560804	14561388	+	asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961	none	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11	Trinity_GG_18675_c0_g1_i21,blat.proc3825164.chain_2655,blat.proc3825164.chain_2659	3
scaffold_1	alt_donor	18029185	18029186	-	asmbl_1076	none	STRG.1268.7	1	STRG.1268.4	1
scaffold_22	alternate_exon	8395824	8396535	+	asmbl_30274	none	STRG.25191.3,Trinity_GG_31264_c1_g1_i1,blat.proc3825176.chain_2317,blat.proc3825176.chain_2318	4	STRG.25191.1	1
scaffold_2	alternate_exon	16284810	16284928	+	asmbl_25108,asmbl_25110	none	STRG.2562.1,blat.proc3825164.chain_2842,blat.proc3825164.chain_2843	3	STRG.2562.2,blat.proc3825164.chain_2841	2
scaffold_5	alt_acceptor	16792927	16792928	-	asmbl_44780	none	STRG.6867.3	1	STRG.6867.2,blat.proc3825150.chain_2980	2
scaffold_21	starts_in_intron	1861020	1861020	-	asmbl_27427	none	blat.proc3825160.chain_954	1	STRG.23827.1,blat.proc3825160.chain_952,blat.proc3825160.chain_953	3
scaffold_8	spliced_intron	10245429	10245640	+	asmbl_53161,asmbl_53162,asmbl_53163,asmbl_53166	none	STRG.10282.1,STRG.10282.2,STRG.10282.3,STRG.10282.4,blat.proc3825168.chain_2730,blat.proc3825168.chain_2731,blat.proc3825168.chain_2733,blat.proc3825168.chain_2734	8	blat.proc3825168.chain_2729	1
scaffold_8	alt_donor	3615643	3615644	+	asmbl_52784,asmbl_52789	none	STRG.9863.2,STRG.9863.4,blat.proc3825168.chain_2408	3	STRG.9863.3	1
scaffold_22	retained_intron	7972285	7972608	+	asmbl_30247	none	STRG.25154.4,Trinity_GG_31241_c0_g1_i3,blat.proc3825176.chain_2284	3	STRG.25154.3	1
scaffold_28	retained_intron	2729367	2729694	-	asmbl_38082	none	blat.proc3825162.chain_2640	1	STRG.29466.1,blat.proc3825162.chain_2641	2
scaffold_11	spliced_intron	9829435	9829603	+	asmbl_5908,asmbl_5913	none	STRG.14008.4,blat.proc3825170.chain_2565	2	STRG.14008.1,STRG.14008.3,Trinity_GG_25038_c0_g1_i4,Trinity_GG_25038_c0_g1_i6,blat.proc3825170.chain_2560,blat.proc3825170.chain_2561	6
scaffold_5	ends_in_intron	9704907	9704907	-	asmbl_44300	none	blat.proc3825150.chain_2498	1	STRG.6293.2,STRG.6293.3,STRG.6293.4,blat.proc3825150.chain_2499,blat.proc3825150.chain_2502,blat.proc3825150.chain_2503,blat.proc3825150.chain_2505	7
scaffold_26	retained_intron	9315672	9315826	+	asmbl_35218,asmbl_35219,asmbl_35221	none	Trinity_GG_33078_c0_g1_i8,blat.proc3825178.chain_1613,blat.proc3825178.chain_1614,blat.proc3825178.chain_1615	4	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	7
scaffold_13	retained_intron	7935012	7935207	-	asmbl_9916,asmbl_9917,asmbl_9918	none	STRG.16070.3,blat.proc3825156.chain_877,blat.proc3825156.chain_878	3	STRG.16070.1,STRG.16070.2,STRG.16070.4,blat.proc3825156.chain_874,blat.proc3825156.chain_875,blat.proc3825156.chain_876	6
scaffold_4	spliced_intron	17964335	17964393	-	asmbl_43337	none	blat.proc3825150.chain_1549	1	STRG.5397.1	1
scaffold_18	alternate_exon	5909451	5910190	+	asmbl_20619	none	STRG.21344.2,blat.proc3825174.chain_2322	2	STRG.21344.1,Trinity_GG_29070_c0_g1_i1,blat.proc3825174.chain_2324	3
scaffold_7	spliced_intron	124900	125149	-	asmbl_50664,asmbl_50665,asmbl_50666	none	STRG.8595.2,STRG.8595.5,STRG.8595.7	3	STRG.8595.1	1
scaffold_12	retained_intron	5501660	5501870	+	asmbl_7657	none	STRG.14705.1,blat.proc3825170.chain_3238,blat.proc3825170.chain_3239	3	STRG.14705.2	1
scaffold_17	starts_in_intron	1030891	1030891	-	asmbl_17665	none	Trinity_GG_11152_c0_g1_i2	1	STRG.19947.1,blat.proc3825158.chain_929	2
scaffold_5	alt_donor	3591572	3591573	-	asmbl_43923,asmbl_43924	none	STRG.5831.1,STRG.5831.2,blat.proc3825150.chain_2046	3	STRG.5831.3,STRG.5831.4,STRG.5831.5,blat.proc3825150.chain_2044	4
scaffold_19	alt_donor	7124019	7124020	+	asmbl_21449	none	STRG.22210.2,blat.proc3825174.chain_3226	2	STRG.22210.1,blat.proc3825174.chain_3227	2
scaffold_5	retained_intron	18758085	18758276	-	asmbl_44873,asmbl_44875	none	Trinity_GG_3898_c0_g1_i3,blat.proc3825150.chain_3107,blat.proc3825150.chain_3108	3	STRG.7008.1,STRG.7008.2,blat.proc3825150.chain_3109	3
scaffold_10	starts_in_intron	4912075	4912075	-	asmbl_4320	none	STRG.12312.1	1	STRG.12312.2	1
scaffold_2	skipped_exon	9189964	9190602	-	asmbl_23360,asmbl_23362,asmbl_23365	none	STRG.2171.2,blat.proc3825148.chain_2198,blat.proc3825148.chain_2201,blat.proc3825148.chain_2203	4	STRG.2171.1,blat.proc3825148.chain_2197,blat.proc3825148.chain_2199,blat.proc3825148.chain_2200	4
scaffold_11	retained_intron	9950772	9950860	-	asmbl_6970	none	blat.proc3825154.chain_2519	1	STRG.14013.1,blat.proc3825154.chain_2520	2
scaffold_5	retained_intron	16648366	16648547	+	asmbl_46115	none	Trinity_GG_21054_c0_g1_i1,blat.proc3825166.chain_3028	2	STRG.6855.1,STRG.6855.2,STRG.6855.3,blat.proc3825166.chain_3027,blat.proc3825166.chain_3029	5
scaffold_19	alternate_exon	12487093	12487324	-	asmbl_22502	none	STRG.22589.2,Trinity_GG_12561_c0_g1_i3,blat.proc3825158.chain_3345	3	STRG.22589.1,blat.proc3825158.chain_3347	2
scaffold_20	ends_in_intron	10134229	10134229	+	asmbl_26939	none	Trinity_GG_30342_c0_g1_i3,blat.proc3825176.chain_736	2	STRG.23558.1,Trinity_GG_30342_c0_g1_i1,blat.proc3825176.chain_735	3
scaffold_1	ends_in_intron	17918519	17918519	+	asmbl_2539	none	Trinity_GG_18053_c0_g1_i3,blat.proc3825164.chain_1402	2	STRG.1253.2	1
scaffold_9	alternate_exon	16564428	16564539	-	asmbl_55589,asmbl_55590	none	blat.proc3825154.chain_272,blat.proc3825154.chain_273	2	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_271,blat.proc3825154.chain_274	6
scaffold_6	spliced_intron	92644	92783	+	asmbl_46632	none	STRG.7066.1,Trinity_GG_21205_c0_g1_i2,blat.proc3825166.chain_3275	3	STRG.7066.2,Trinity_GG_21205_c0_g1_i1,blat.proc3825166.chain_3276	3
scaffold_27	spliced_intron	4004657	4005068	+	asmbl_36243,asmbl_36245,asmbl_36248,asmbl_36253	none	STRG.28871.1,STRG.28871.3,STRG.28871.4,STRG.28871.5,blat.proc3825178.chain_2033,blat.proc3825178.chain_2037	6	STRG.28871.2,STRG.28871.6,Trinity_GG_33286_c0_g1_i7,blat.proc3825178.chain_2036,blat.proc3825178.chain_2038	5
scaffold_11	alt_donor	12892235	12892236	+	asmbl_6026	none	STRG.14171.1,blat.proc3825170.chain_2715	2	STRG.14171.2,blat.proc3825170.chain_2714	2
scaffold_5	retained_intron	14732107	14732244	-	asmbl_44617	none	blat.proc3825150.chain_2845	1	STRG.6676.1,blat.proc3825150.chain_2844	2
scaffold_24	retained_exon	6784705	6784803	-	asmbl_32974,asmbl_32975	none	STRG.26733.2,STRG.26733.4	2	STRG.26733.1	1
scaffold_19	spliced_intron	810594	810631	+	asmbl_21211	none	STRG.21863.2	1	STRG.21863.1	1
scaffold_23	spliced_intron	7686045	7687381	+	asmbl_31713,asmbl_31714	none	STRG.26090.2,STRG.26090.6,Trinity_GG_31727_c0_g1_i1,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3057	6	STRG.26090.4,Trinity_GG_31727_c0_g1_i6,blat.proc3825176.chain_3055	3
scaffold_27	alt_acceptor	2820669	2820670	+	asmbl_36117,asmbl_36122,asmbl_36123	none	STRG.28763.2,STRG.28763.3,blat.proc3825178.chain_1925	3	STRG.28763.5	1
scaffold_15	retained_intron	12026739	12026841	-	asmbl_14557	none	Trinity_GG_10446_c0_g1_i1,blat.proc3825156.chain_3464	2	STRG.18643.1	1
scaffold_2	retained_intron	4687374	4687408	-	asmbl_23086	none	STRG.1889.2	1	STRG.1889.1,STRG.1889.3	2
scaffold_1	ends_in_intron	1610750	1610750	+	asmbl_1498	none	STRG.113.2,blat.proc3825164.chain_164	2	STRG.113.1,Trinity_GG_17360_c0_g1_i2,Trinity_GG_17360_c0_g1_i4,Trinity_GG_17360_c0_g1_i5,blat.proc3825164.chain_163,blat.proc3825164.chain_165,blat.proc3825164.chain_167	7
scaffold_8	skipped_exon	17463643	17464507	-	asmbl_52462	none	STRG.10667.2,blat.proc3825152.chain_2917	2	STRG.10667.1,blat.proc3825152.chain_2918	2
scaffold_5	spliced_intron	10968500	10969203	+	asmbl_45712	none	STRG.6375.1,blat.proc3825166.chain_2593	2	STRG.6375.2,blat.proc3825166.chain_2594	2
scaffold_4	alt_donor	6283486	6283487	-	asmbl_42670,asmbl_42673	none	STRG.4498.3,Trinity_GG_2543_c0_g1_i1,blat.proc3825150.chain_779	3	STRG.4498.1,STRG.4498.2,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778,blat.proc3825150.chain_780	12
scaffold_11	spliced_intron	6138503	6138584	-	asmbl_6699,asmbl_6700,asmbl_6702	none	STRG.13679.1,STRG.13679.2,blat.proc3825154.chain_2225,blat.proc3825154.chain_2226,blat.proc3825154.chain_2227	5	blat.proc3825154.chain_2224	1
scaffold_13	starts_in_intron	13111487	13111487	+	asmbl_11366	none	Trinity_GG_26271_c1_g1_i1,blat.proc3825172.chain_1090	2	STRG.16387.1,Trinity_GG_26271_c0_g1_i1,blat.proc3825172.chain_1089	3
scaffold_11	alternate_exon	15804376	15804428	+	asmbl_6131	none	STRG.14320.2	1	STRG.14320.1	1
scaffold_24	starts_in_intron	4374422	4374422	+	asmbl_32198,asmbl_32199	none	STRG.26598.2,blat.proc3825176.chain_3482	2	STRG.26598.1	1
scaffold_14	ends_in_intron	15912005	15912005	-	asmbl_13764	none	Trinity_GG_10019_c0_g1_i1,blat.proc3825156.chain_2644	2	STRG.17833.2,STRG.17833.4,Trinity_GG_10019_c0_g1_i2,blat.proc3825156.chain_2645,blat.proc3825156.chain_2646	5
scaffold_8	skipped_exon	17972241	17974549	-	asmbl_52497	none	STRG.10702.1,Trinity_GG_5951_c0_g1_i1,blat.proc3825152.chain_2975	3	STRG.10702.2	1
scaffold_2	retained_intron	7782195	7782467	+	asmbl_24576	none	blat.proc3825164.chain_2228	1	STRG.2075.1,STRG.2075.2,STRG.2075.3,STRG.2075.4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2229,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236,blat.proc3825164.chain_2237	9
scaffold_16	alternate_exon	14543794	14544203	-	asmbl_17461	none	STRG.19850.2	1	blat.proc3825158.chain_900,blat.proc3825158.chain_901,blat.proc3825158.chain_902	3
scaffold_18	skipped_exon	1512722	1513566	+	asmbl_20359	none	STRG.21044.2	1	STRG.21044.3	1
scaffold_9	spliced_intron	15395597	15395679	+	asmbl_54566,asmbl_54567,asmbl_54568,asmbl_54572	none	STRG.11741.1,STRG.11741.2,STRG.11741.3,Trinity_GG_23876_c0_g1_i2,Trinity_GG_23876_c0_g1_i5,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i8,blat.proc3825170.chain_552,blat.proc3825170.chain_555,blat.proc3825170.chain_556,blat.proc3825170.chain_557	11	Trinity_GG_23876_c0_g1_i7,blat.proc3825170.chain_553	2
scaffold_13	spliced_intron	9553953	9554101	+	asmbl_11208	none	Trinity_GG_26224_c0_g1_i2,blat.proc3825172.chain_999	2	STRG.16221.1,Trinity_GG_26224_c0_g1_i1,blat.proc3825172.chain_998	3
scaffold_15	alternate_exon	2782594	2782814	-	asmbl_14049	none	STRG.18069.2	1	STRG.18069.1	1
scaffold_2	starts_in_intron	15637489	15637489	-	asmbl_23642	none	blat.proc3825148.chain_2481	1	STRG.2517.1,blat.proc3825148.chain_2482	2
scaffold_28	retained_intron	2199808	2199837	+	asmbl_37348,asmbl_37349	none	STRG.29391.1,STRG.29391.2,blat.proc3825178.chain_2548,blat.proc3825178.chain_2549,blat.proc3825178.chain_2550	5	STRG.29391.3	1
scaffold_4	starts_in_intron	1971772	1971772	-	asmbl_42381	none	blat.proc3825150.chain_422	1	blat.proc3825150.chain_423,blat.proc3825150.chain_424	2
scaffold_14	ends_in_intron	177902	177902	-	asmbl_12788,asmbl_12789	none	STRG.16708.3,blat.proc3825156.chain_1508	2	STRG.16708.1,blat.proc3825156.chain_1509	2
scaffold_7	skipped_exon	8507767	8510079	+	asmbl_50001	none	STRG.9078.1,blat.proc3825168.chain_1604	2	STRG.9078.3,blat.proc3825168.chain_1607	2
scaffold_7	alt_acceptor	13806988	13806989	+	asmbl_50378	none	STRG.9488.4	1	STRG.9488.1,STRG.9488.2	2
scaffold_8	spliced_intron	7986965	7987830	-	asmbl_51942,asmbl_51944	none	STRG.10098.1,STRG.10098.2,Trinity_GG_5617_c0_g1_i4,blat.proc3825152.chain_2334,blat.proc3825152.chain_2335	5	Trinity_GG_5617_c0_g1_i2,Trinity_GG_5617_c1_g1_i1,blat.proc3825152.chain_2333,blat.proc3825152.chain_2338	4
scaffold_1	retained_intron	20347167	20348278	+	asmbl_2617,asmbl_2618,asmbl_2623	none	STRG.1396.2,STRG.1396.3,Trinity_GG_18153_c0_g1_i4,blat.proc3825164.chain_1584,blat.proc3825164.chain_1586	5	STRG.1396.5	1
scaffold_12	alt_donor	6519467	6519468	+	asmbl_7692	none	STRG.14747.2	1	STRG.14747.1	1
scaffold_7	alt_donor	712437	712438	-	asmbl_50695	none	blat.proc3825152.chain_1092	1	STRG.8610.1,blat.proc3825152.chain_1090,blat.proc3825152.chain_1093	3
scaffold_2	starts_in_intron	15286861	15286861	+	asmbl_25024	none	STRG.2481.3	1	STRG.2481.1	1
scaffold_13	alt_donor	6968197	6968198	-	asmbl_9824	none	blat.proc3825156.chain_817	1	blat.proc3825156.chain_818	1
scaffold_18	skipped_exon	8875038	8876200	-	asmbl_20036,asmbl_20039	none	STRG.21551.1,STRG.21551.3,blat.proc3825158.chain_2471	3	STRG.21551.2,blat.proc3825158.chain_2468	2
scaffold_14	ends_in_intron	14634005	14634005	-	asmbl_13698	none	blat.proc3825156.chain_2557	1	STRG.17726.1,blat.proc3825156.chain_2558	2
scaffold_22	alternate_exon	8189260	8191393	-	asmbl_29456	none	STRG.25169.3	1	STRG.25169.2	1
scaffold_17	ends_in_intron	677580	677580	+	asmbl_18557	none	blat.proc3825174.chain_804	1	STRG.19920.2,Trinity_GG_28219_c0_g1_i4,blat.proc3825174.chain_803,blat.proc3825174.chain_805	4
scaffold_20	alt_donor	1489700	1489701	+	asmbl_26415,asmbl_26416,asmbl_26419	none	STRG.22869.3,STRG.22869.4,STRG.22869.6	3	STRG.22869.1,STRG.22869.2	2
scaffold_12	starts_in_intron	11794955	11794955	-	asmbl_8833	none	blat.proc3825154.chain_3620	1	STRG.15098.1,blat.proc3825154.chain_3619	2
scaffold_6	retained_exon	11482748	11482799	+	asmbl_47333	none	STRG.7943.4	1	STRG.7943.1,STRG.7943.3,blat.proc3825168.chain_310,blat.proc3825168.chain_312,blat.proc3825168.chain_314	5
scaffold_16	spliced_intron	6137953	6138100	-	asmbl_17143	none	STRG.19348.1,blat.proc3825158.chain_514	2	STRG.19348.2,blat.proc3825158.chain_515	2
scaffold_8	starts_in_intron	16385527	16385527	+	asmbl_53453,asmbl_53456	none	STRG.10620.4,Trinity_GG_23226_c0_g1_i6,blat.proc3825168.chain_3193	3	STRG.10620.1,STRG.10620.2,Trinity_GG_23226_c0_g1_i2,Trinity_GG_23226_c0_g1_i3,Trinity_GG_23226_c0_g1_i4,blat.proc3825168.chain_3195,blat.proc3825168.chain_3196,blat.proc3825168.chain_3197	8
scaffold_2	alt_acceptor	3805904	3805905	-	asmbl_23002	none	STRG.1819.2	1	STRG.1819.1,blat.proc3825148.chain_1752	2
scaffold_1	alternate_exon	5201910	5201973	+	asmbl_1704,asmbl_1708,asmbl_1709,asmbl_1710	none	STRG.329.2,STRG.329.3,blat.proc3825164.chain_473,blat.proc3825164.chain_476	4	STRG.329.1,blat.proc3825164.chain_467,blat.proc3825164.chain_469	3
scaffold_19	spliced_intron	12247166	12247258	-	asmbl_22468,asmbl_22469,asmbl_22470,asmbl_22471,asmbl_22473	none	STRG.22552.1,STRG.22552.2,blat.proc3825158.chain_3307,blat.proc3825158.chain_3309,blat.proc3825158.chain_3310,blat.proc3825158.chain_3311,blat.proc3825158.chain_3313	7	blat.proc3825158.chain_3308	1
scaffold_16	alt_donor	9144477	9144478	+	asmbl_16462,asmbl_16463	none	blat.proc3825174.chain_434,blat.proc3825174.chain_437	2	STRG.19514.1,blat.proc3825174.chain_435,blat.proc3825174.chain_436,blat.proc3825174.chain_438	4
scaffold_20	starts_in_intron	3713639	3713639	+	asmbl_26539	none	Trinity_GG_29989_c0_g1_i4,blat.proc3825176.chain_181	2	STRG.23072.1,STRG.23072.2,blat.proc3825176.chain_182	3
scaffold_19	spliced_intron	5155129	5155211	+	asmbl_21355	none	STRG.22084.3,blat.proc3825174.chain_3028	2	STRG.22084.1,STRG.22084.2,STRG.22084.4,blat.proc3825174.chain_3026,blat.proc3825174.chain_3027	5
scaffold_3	skipped_exon	14530559	14532845	-	asmbl_39393	none	STRG.3793.1,blat.proc3825148.chain_3746	2	STRG.3793.2,blat.proc3825148.chain_3745	2
scaffold_643	retained_intron	1606	1628	-	asmbl_49491	none	blat.proc3825162.chain_3524	1	STRG.30415.3	1
scaffold_17	starts_in_intron	9488624	9488624	+	asmbl_19094	none	Trinity_GG_28585_c0_g1_i5,blat.proc3825174.chain_1447	2	STRG.20572.1,STRG.20572.2,STRG.20572.3,blat.proc3825174.chain_1444,blat.proc3825174.chain_1445,blat.proc3825174.chain_1446,blat.proc3825174.chain_1449,blat.proc3825174.chain_1450	8
scaffold_18	starts_in_intron	6321185	6321185	+	asmbl_20672	none	blat.proc3825174.chain_2351	1	STRG.21364.1	1
scaffold_20	spliced_intron	5180909	5180942	+	asmbl_26610	none	STRG.23156.1	1	STRG.23156.2	1
scaffold_6	skipped_exon	12090541	12092555	-	asmbl_48796	none	STRG.7984.1,blat.proc3825152.chain_368	2	STRG.7984.2	1
scaffold_12	alt_acceptor	10187619	10187620	-	asmbl_8731,asmbl_8732,asmbl_8733,asmbl_8735,asmbl_8738	none	STRG.14994.1,STRG.14994.2,STRG.14994.3,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516,blat.proc3825154.chain_3517,blat.proc3825154.chain_3520	8	STRG.14994.4,blat.proc3825154.chain_3518	2
scaffold_2	retained_intron	18730231	18730319	-	asmbl_23818	none	blat.proc3825148.chain_2697	1	STRG.2753.1,blat.proc3825148.chain_2696	2
scaffold_4	alt_donor	10954917	10954918	+	asmbl_41687,asmbl_41688,asmbl_41690	none	STRG.4821.1,STRG.4821.2,blat.proc3825166.chain_1243,blat.proc3825166.chain_1244	4	blat.proc3825166.chain_1241	1
scaffold_14	retained_intron	8610516	8610600	-	asmbl_13330	none	Trinity_GG_9707_c0_g1_i1,blat.proc3825156.chain_2123	2	STRG.17296.1,STRG.17296.2,blat.proc3825156.chain_2120,blat.proc3825156.chain_2122	4
scaffold_8	ends_in_intron	3536611	3536611	-	asmbl_51741	none	blat.proc3825152.chain_2128	1	STRG.9850.1	1
scaffold_16	ends_in_intron	9923502	9923502	-	asmbl_17301	none	STRG.19581.2,blat.proc3825158.chain_705	2	STRG.19581.1	1
scaffold_20	ends_in_intron	3713536	3713536	+	asmbl_26540	none	blat.proc3825176.chain_179	1	STRG.23072.1,STRG.23072.2,blat.proc3825176.chain_182	3
scaffold_6	retained_exon	18210213	18210333	-	asmbl_49231	none	STRG.8496.2	1	STRG.8496.1	1
scaffold_6	alt_donor	17847263	17847264	+	asmbl_47791	none	STRG.8474.1	1	blat.proc3825168.chain_931	1
scaffold_9	alt_donor	16666233	16666234	-	asmbl_55609	none	STRG.11805.2	1	STRG.11805.1	1
scaffold_12	alt_donor	7626548	7626549	-	asmbl_8612	none	STRG.14843.2	1	blat.proc3825154.chain_3291	1
scaffold_1	retained_intron	12745169	12745369	-	asmbl_750	none	STRG.895.2,blat.proc3825148.chain_849	2	STRG.895.3,STRG.895.4,blat.proc3825148.chain_851	3
scaffold_3	ends_in_intron	11642530	11642530	+	asmbl_40365,asmbl_40366	none	STRG.3596.4,blat.proc3825166.chain_109	2	STRG.3596.1,blat.proc3825166.chain_110	2
scaffold_9	spliced_intron	11793088	11794280	-	asmbl_55306,asmbl_55309	none	STRG.11496.1,blat.proc3825152.chain_3684,blat.proc3825152.chain_3686	3	STRG.11496.3,blat.proc3825152.chain_3685	2
scaffold_1	alt_acceptor	6980104	6980105	+	asmbl_1873	none	STRG.501.2	1	STRG.501.1,blat.proc3825164.chain_653	2
scaffold_4	retained_exon	12571256	12571368	-	asmbl_42930	none	STRG.4898.1,blat.proc3825150.chain_1087	2	STRG.4898.2,blat.proc3825150.chain_1086	2
scaffold_1	alt_donor	5726797	5726798	-	asmbl_290	none	STRG.386.2	1	STRG.386.1,blat.proc3825148.chain_369,blat.proc3825148.chain_370,blat.proc3825148.chain_371	4
scaffold_18	spliced_intron	11328359	11328484	+	asmbl_20940,asmbl_20942,asmbl_20943	none	STRG.21676.1,STRG.21676.2,blat.proc3825174.chain_2683,blat.proc3825174.chain_2691	4	Trinity_GG_29277_c0_g1_i9,blat.proc3825174.chain_2690	2
scaffold_4	alt_acceptor	12606727	12606728	+	asmbl_41731	none	STRG.4900.1,blat.proc3825166.chain_1236	2	STRG.4900.2,blat.proc3825166.chain_1238	2
scaffold_5	alt_acceptor	9085384	9085385	+	asmbl_45600	none	Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2480	2	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6
scaffold_19	alt_acceptor	595689	595690	+	asmbl_21190	none	blat.proc3825174.chain_2887	1	STRG.21841.1,blat.proc3825174.chain_2888,blat.proc3825174.chain_2889	3
scaffold_4	retained_intron	16479929	16480208	-	asmbl_43179	none	Trinity_GG_2926_c2_g1_i1,blat.proc3825150.chain_1409	2	STRG.5225.1,STRG.5225.2,STRG.5225.3,blat.proc3825150.chain_1403,blat.proc3825150.chain_1404,blat.proc3825150.chain_1405,blat.proc3825150.chain_1406	7
scaffold_8	retained_intron	6029233	6029335	+	asmbl_52924	none	blat.proc3825168.chain_2609	1	blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2613,blat.proc3825168.chain_2614,blat.proc3825168.chain_2615	5
scaffold_4	alt_donor	17020779	17020780	-	asmbl_43246	none	blat.proc3825150.chain_1472	1	STRG.5297.1,blat.proc3825150.chain_1469	2
scaffold_5	spliced_intron	10303566	10303683	-	asmbl_44343,asmbl_44344	none	STRG.6333.1,blat.proc3825150.chain_2553,blat.proc3825150.chain_2554,blat.proc3825150.chain_2555	4	blat.proc3825150.chain_2556	1
scaffold_2	starts_in_intron	774778	774778	+	asmbl_24101	none	blat.proc3825164.chain_1684	1	STRG.1549.1	1
scaffold_8	retained_intron	18249988	18250262	-	asmbl_52526,asmbl_52530,asmbl_52531	none	STRG.10728.1,STRG.10728.2,blat.proc3825152.chain_3017,blat.proc3825152.chain_3019	4	STRG.10728.3,blat.proc3825152.chain_3015,blat.proc3825152.chain_3016	3
scaffold_6	alt_acceptor	78361	78362	-	asmbl_48019,asmbl_48020,asmbl_48021	none	STRG.7072.1,STRG.7072.3,STRG.7072.4	3	STRG.7072.2	1
scaffold_10	alt_donor	8904218	8904219	-	asmbl_4637,asmbl_4638,asmbl_4639	none	STRG.12634.2,STRG.12634.3,blat.proc3825154.chain_1246,blat.proc3825154.chain_1247,blat.proc3825154.chain_1248,blat.proc3825178.chain_3390	6	STRG.12634.1	1
scaffold_2	retained_intron	956971	957115	-	asmbl_22825	none	Trinity_GG_850_c0_g1_i2,blat.proc3825148.chain_1534	2	STRG.1572.1,STRG.1572.2,blat.proc3825148.chain_1533	3
scaffold_20	retained_intron	631243	631334	-	asmbl_25504	none	blat.proc3825158.chain_3611	1	STRG.22765.3,blat.proc3825158.chain_3609	2
scaffold_13	retained_intron	518381	518487	+	asmbl_10487,asmbl_10493	none	STRG.15449.1,blat.proc3825172.chain_186,blat.proc3825172.chain_188	3	STRG.15449.4,blat.proc3825172.chain_183	2
scaffold_22	alternate_exon	1703905	1705691	-	asmbl_29147,asmbl_29148	none	STRG.24761.1,STRG.24761.2,Trinity_GG_13841_c0_g1_i1,Trinity_GG_13841_c0_g1_i3,blat.proc3825160.chain_1958,blat.proc3825160.chain_1959	6	blat.proc3825160.chain_1960	1
scaffold_4	alt_donor	13076283	13076284	+	asmbl_41776,asmbl_41781	none	STRG.4947.1,STRG.4947.2,blat.proc3825166.chain_1379	3	STRG.4947.3,blat.proc3825166.chain_1381	2
scaffold_2	starts_in_intron	9190184	9190184	-	asmbl_23361	none	Trinity_GG_1213_c1_g1_i1,blat.proc3825148.chain_2204	2	STRG.2171.1,STRG.2171.2,blat.proc3825148.chain_2197,blat.proc3825148.chain_2198,blat.proc3825148.chain_2199,blat.proc3825148.chain_2200,blat.proc3825148.chain_2201,blat.proc3825148.chain_2203	8
scaffold_3	starts_in_intron	12849431	12849431	-	asmbl_39234	none	Trinity_GG_19807_c1_g1_i1,Trinity_GG_2000_c0_g1_i1	2	Trinity_GG_2007_c0_g1_i2	1
scaffold_2	spliced_intron	8857714	8857736	+	asmbl_24649	none	STRG.2136.2	1	STRG.2136.1	1
scaffold_6	ends_in_intron	13168949	13168949	-	asmbl_48885	none	Trinity_GG_4590_c0_g1_i1,blat.proc3825152.chain_474	2	STRG.8074.1,STRG.8074.2,blat.proc3825152.chain_470,blat.proc3825152.chain_472,blat.proc3825152.chain_475,blat.proc3825152.chain_476,blat.proc3825152.chain_477	7
scaffold_11	starts_in_intron	7534433	7534433	-	asmbl_6776	none	STRG.13753.1	1	STRG.13753.2,Trinity_GG_7662_c0_g1_i1,blat.proc3825154.chain_2252	3
scaffold_1	spliced_intron	14189225	14189671	-	asmbl_866,asmbl_868,asmbl_871,asmbl_872	none	STRG.1005.1,Trinity_GG_515_c0_g2_i1,blat.proc3825148.chain_968,blat.proc3825148.chain_969,blat.proc3825148.chain_971,blat.proc3825148.chain_974	6	Trinity_GG_515_c0_g1_i9,blat.proc3825148.chain_972	2
scaffold_22	skipped_exon	5981551	5983283	-	asmbl_29300,asmbl_29301	none	STRG.24948.1,STRG.24948.2,STRG.24948.3	3	STRG.24948.4	1
scaffold_13	spliced_intron	2571028	2571173	+	asmbl_10624,asmbl_10625,asmbl_10627,asmbl_10628,asmbl_10629	none	STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_323,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_327	8	STRG.15563.1,STRG.15563.2,Trinity_GG_25871_c0_g1_i4,blat.proc3825172.chain_326	4
scaffold_1	retained_intron	5962592	5962698	-	asmbl_304	none	Trinity_GG_210_c0_g1_i1,blat.proc3825148.chain_362	2	STRG.399.1,blat.proc3825148.chain_363	2
scaffold_3	skipped_exon	10627882	10630201	+	asmbl_40284	none	STRG.3513.3,blat.proc3825164.chain_3682	2	STRG.3513.1,STRG.3513.2,STRG.3513.4,STRG.3513.5,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3684,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688,blat.proc3825164.chain_3689	11
scaffold_26	spliced_intron	3563037	3563144	+	asmbl_34792,asmbl_34794	none	STRG.28036.1,STRG.28036.2	2	STRG.28036.5,Trinity_GG_32778_c0_g1_i5,blat.proc3825178.chain_1076,blat.proc3825178.chain_1077	4
scaffold_8	retained_exon	17811862	17811900	+	asmbl_53506,asmbl_53509	none	STRG.10693.1,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3180,blat.proc3825168.chain_3184	4	STRG.10693.2,STRG.10693.4,Trinity_GG_23223_c0_g1_i5,blat.proc3825168.chain_3183	4
scaffold_25	ends_in_intron	4555462	4555462	-	asmbl_34210	none	STRG.27393.3,Trinity_GG_15347_c2_g1_i1	2	STRG.27393.1,blat.proc3825162.chain_737	2
scaffold_13	spliced_intron	2340135	2340365	+	asmbl_10596,asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605	none	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.8	5	STRG.15564.10,STRG.15564.9	2
scaffold_21	starts_in_intron	1861768	1861768	-	asmbl_27426	none	blat.proc3825160.chain_952	1	STRG.23827.1,blat.proc3825160.chain_953	2
scaffold_9	retained_intron	8396091	8396292	+	asmbl_54170	none	blat.proc3825170.chain_61	1	blat.proc3825170.chain_59	1
scaffold_3	alt_acceptor	12670609	12670610	-	asmbl_39221	none	STRG.3663.1,blat.proc3825148.chain_3516	2	STRG.3663.2	1
scaffold_14	retained_intron	13895808	13895933	+	asmbl_12510	none	blat.proc3825172.chain_2392	1	STRG.17673.1,STRG.17673.2,blat.proc3825172.chain_2393	3
scaffold_9	skipped_exon	15589007	15589902	+	asmbl_54579,asmbl_54581	none	STRG.11750.1,blat.proc3825170.chain_531,blat.proc3825170.chain_532	3	blat.proc3825170.chain_530	1
scaffold_17	retained_exon	9487955	9488033	+	asmbl_19091,asmbl_19093,asmbl_19097	none	STRG.20572.2,STRG.20572.3,blat.proc3825174.chain_1445,blat.proc3825174.chain_1449,blat.proc3825174.chain_1450	5	STRG.20572.1,blat.proc3825174.chain_1444,blat.proc3825174.chain_1446	3
scaffold_17	alternate_exon	1290917	1290941	-	asmbl_17687	none	STRG.19964.6	1	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_972,blat.proc3825158.chain_973,blat.proc3825158.chain_975,blat.proc3825158.chain_976	7
scaffold_13	spliced_intron	4459134	4459215	+	asmbl_10794,asmbl_10796,asmbl_10797	none	STRG.15770.1,STRG.15770.3,STRG.15770.4,blat.proc3825172.chain_509,blat.proc3825172.chain_511	5	STRG.15770.2,Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_510,blat.proc3825172.chain_512	4
scaffold_12	retained_intron	6396998	6397091	-	asmbl_8531	none	blat.proc3825154.chain_3281	1	STRG.14738.1,blat.proc3825154.chain_3280	2
scaffold_17	alt_donor	2565384	2565385	+	asmbl_18663	none	STRG.20057.3,blat.proc3825174.chain_934	2	STRG.20057.1,STRG.20057.2,blat.proc3825174.chain_935	3
scaffold_10	retained_intron	2675286	2675371	+	asmbl_2991,asmbl_2992,asmbl_2993	none	STRG.12083.1,STRG.12083.2,STRG.12083.3,blat.proc3825170.chain_832	4	STRG.12083.4	1
scaffold_15	starts_in_intron	15650119	15650119	+	asmbl_15812	none	Trinity_GG_27704_c0_g1_i1,blat.proc3825172.chain_3617	2	STRG.18956.1,blat.proc3825172.chain_3616	2
scaffold_28	retained_intron	3168895	3169011	+	asmbl_37451,asmbl_37452,asmbl_37453	none	STRG.29529.2,STRG.29529.3,blat.proc3825162.chain_2706	3	Trinity_GG_33683_c0_g1_i1,blat.proc3825178.chain_2718	2
scaffold_3	skipped_exon	12419601	12421743	+	asmbl_40400	none	STRG.3637.1,blat.proc3825166.chain_131	2	STRG.3637.2,blat.proc3825166.chain_134	2
scaffold_17	retained_intron	1304202	1304506	-	asmbl_17698	none	blat.proc3825158.chain_1030	1	STRG.19975.1,STRG.19975.2,blat.proc3825158.chain_1029,blat.proc3825158.chain_1031,blat.proc3825158.chain_1032,blat.proc3825158.chain_1034,blat.proc3825158.chain_1035	7
scaffold_19	alt_acceptor	13264412	13264413	-	asmbl_22630,asmbl_22633	none	STRG.22647.2,blat.proc3825158.chain_3491	2	STRG.22647.1,Trinity_GG_12616_c0_g1_i4,blat.proc3825158.chain_3492	3
scaffold_4	alt_donor	17122777	17122778	-	asmbl_43253,asmbl_43255	none	STRG.5310.1,STRG.5310.2,Trinity_GG_2967_c0_g1_i1	3	STRG.5310.3,STRG.5310.4,Trinity_GG_2967_c0_g1_i2	3
scaffold_28	spliced_intron	7421600	7421706	-	asmbl_38399	none	STRG.29817.1,blat.proc3825162.chain_2992	2	blat.proc3825162.chain_2991	1
scaffold_565	ends_in_intron	2535	2535	+	asmbl_46577	none	STRG.30377.2,blat.proc3825178.chain_3463	2	STRG.30377.1,blat.proc3825178.chain_3464	2
scaffold_22	starts_in_intron	4570185	4570185	+	asmbl_30017	none	Trinity_GG_31059_c0_g2_i1,blat.proc3825176.chain_1981	2	STRG.24886.1,blat.proc3825176.chain_1979,blat.proc3825176.chain_1980	3
scaffold_27	ends_in_intron	3019453	3019453	+	asmbl_36165	none	blat.proc3825178.chain_1880	1	STRG.28790.1,STRG.28790.2	2
scaffold_10	alt_acceptor	9397816	9397817	+	asmbl_3375	none	STRG.12679.1	1	blat.proc3825170.chain_1295	1
scaffold_24	retained_exon	7595282	7595839	-	asmbl_33035	none	STRG.26799.2	1	STRG.26799.1	1
scaffold_17	alternate_exon	13072773	13072903	-	asmbl_18347	none	STRG.20802.2	1	blat.proc3825158.chain_1807	1
scaffold_13	alt_donor	9242915	9242916	+	asmbl_11185	none	STRG.16188.2,blat.proc3825172.chain_884	2	STRG.16188.1,blat.proc3825172.chain_883	2
scaffold_18	alt_acceptor	1391633	1391634	-	asmbl_19618,asmbl_19620	none	STRG.21025.1,blat.proc3825158.chain_2006	2	STRG.21025.2,STRG.21025.3,blat.proc3825158.chain_2005	3
scaffold_16	starts_in_intron	7229461	7229461	-	asmbl_17168	none	blat.proc3825158.chain_480	1	STRG.19399.2,STRG.19399.3,STRG.19399.4	3
scaffold_24	starts_in_intron	828361	828361	+	asmbl_32051	none	Trinity_GG_31845_c1_g1_i1	1	STRG.26364.1	1
scaffold_5	retained_intron	14732517	14732623	-	asmbl_44616	none	Trinity_GG_3740_c0_g1_i1,blat.proc3825150.chain_2846	2	STRG.6676.1,blat.proc3825150.chain_2844,blat.proc3825150.chain_2845	3
scaffold_9	skipped_exon	14315617	14316311	-	asmbl_55477	none	STRG.11680.2	1	STRG.11680.1	1
scaffold_6	spliced_intron	187725	187786	+	asmbl_46639	none	blat.proc3825166.chain_3308	1	STRG.7087.1	1
scaffold_13	starts_in_intron	4375837	4375837	+	asmbl_10789	none	blat.proc3825172.chain_499	1	STRG.15764.1,STRG.15764.2,STRG.15764.3,STRG.15764.4	4
scaffold_3	alternate_exon	11640409	11640517	+	asmbl_40364	none	STRG.3596.2	1	STRG.3596.1,blat.proc3825166.chain_109,blat.proc3825166.chain_110	3
scaffold_10	retained_exon	5259152	5259245	-	asmbl_4353	none	STRG.12356.2	1	STRG.12356.1,blat.proc3825154.chain_920	2
scaffold_4	alt_acceptor	4444042	4444043	+	asmbl_41272	none	STRG.4344.1,Trinity_GG_19733_c0_g1_i1,blat.proc3825166.chain_800	3	STRG.4344.2,Trinity_GG_19733_c0_g1_i2,blat.proc3825166.chain_801	3
scaffold_14	skipped_exon	14143576	14144727	+	asmbl_12526,asmbl_12527	none	STRG.17687.2,STRG.17687.4	2	STRG.17687.1,STRG.17687.3,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	4
scaffold_10	retained_intron	5200984	5201075	-	asmbl_4347	none	blat.proc3825154.chain_912	1	STRG.12347.1,STRG.12347.2,blat.proc3825154.chain_913,blat.proc3825154.chain_914	4
scaffold_5	retained_intron	10852168	10852260	+	asmbl_45701	none	blat.proc3825166.chain_2522	1	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2525	3
scaffold_9	alt_donor	14819579	14819580	-	asmbl_55494,asmbl_55504	none	STRG.11702.3,STRG.11702.7,Trinity_GG_6457_c0_g1_i2,blat.proc3825154.chain_158	4	STRG.11702.1,blat.proc3825154.chain_160,blat.proc3825154.chain_161	3
scaffold_1	alt_donor	11800707	11800708	-	asmbl_668	none	STRG.796.3,Trinity_GG_419_c0_g1_i5,blat.proc3825148.chain_788	3	STRG.796.1	1
scaffold_15	ends_in_intron	14858312	14858312	-	asmbl_14749	none	blat.proc3825158.chain_13	1	STRG.18897.1,blat.proc3825158.chain_12	2
scaffold_22	skipped_exon	511408	512941	-	asmbl_29092,asmbl_29098,asmbl_29099,asmbl_29100,asmbl_29103	none	STRG.24702.1,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i12,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i15,Trinity_GG_13790_c0_g1_i9,blat.proc3825160.chain_1860,blat.proc3825160.chain_1861,blat.proc3825160.chain_1864,blat.proc3825160.chain_1865,blat.proc3825160.chain_1869	11	STRG.24702.5,Trinity_GG_13790_c0_g1_i5,blat.proc3825160.chain_1866	3
scaffold_19	retained_intron	96182	96601	-	asmbl_21982	none	Trinity_GG_12176_c0_g1_i3,blat.proc3825158.chain_2672	2	STRG.21827.1,Trinity_GG_12176_c0_g1_i1,blat.proc3825158.chain_2673	3
scaffold_21	ends_in_intron	254803	254803	-	asmbl_27289	none	STRG.23725.4	1	STRG.23725.1,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806	5
scaffold_7	alt_donor	31390	31391	+	asmbl_49533	none	STRG.8587.2,blat.proc3825168.chain_1094	2	STRG.8587.1	1
scaffold_22	starts_in_intron	7940485	7940485	+	asmbl_30237	none	Trinity_GG_31235_c0_g1_i1,blat.proc3825176.chain_2270	2	STRG.25141.1	1
scaffold_12	alt_donor	12015149	12015150	+	asmbl_7970	none	STRG.15117.1,Trinity_GG_25593_c0_g1_i5,blat.proc3825170.chain_3543	3	STRG.15117.2,Trinity_GG_25593_c0_g1_i3,blat.proc3825170.chain_3542	3
scaffold_22	alt_acceptor	8824801	8824802	+	asmbl_30290	none	STRG.25241.4	1	STRG.25241.2	1
scaffold_20	ends_in_intron	10383915	10383915	+	asmbl_26956	none	Trinity_GG_30302_c1_g1_i1,blat.proc3825176.chain_673	2	STRG.23583.2,STRG.23583.3,STRG.23583.4,blat.proc3825176.chain_672	4
scaffold_7	alternate_exon	7026049	7026226	+	asmbl_49890	none	STRG.8964.1,blat.proc3825168.chain_1450	2	STRG.8964.2,blat.proc3825168.chain_1451	2
scaffold_7	alt_donor	6878283	6878284	+	asmbl_49874	none	STRG.8947.2	1	STRG.8947.1	1
scaffold_25	spliced_intron	362923	362986	-	asmbl_33976	none	blat.proc3825162.chain_431	1	STRG.27079.1	1
scaffold_6	starts_in_intron	12027764	12027764	-	asmbl_48774	none	STRG.7979.2,blat.proc3825152.chain_362	2	STRG.7979.1,blat.proc3825152.chain_360,blat.proc3825152.chain_361	3
scaffold_26	alternate_exon	2954123	2954979	-	asmbl_35459	none	STRG.27989.1,blat.proc3825162.chain_1298	2	STRG.27989.2,STRG.27989.3,STRG.27989.4,blat.proc3825162.chain_1297	4
scaffold_13	spliced_intron	8237557	8237860	-	asmbl_9958,asmbl_9959	none	STRG.16116.1,blat.proc3825156.chain_1035,blat.proc3825156.chain_1038	3	blat.proc3825156.chain_1037	1
scaffold_25	alt_donor	7927682	7927683	+	asmbl_33694,asmbl_33696	none	STRG.27621.1,STRG.27621.2,Trinity_GG_32493_c0_g1_i1,blat.proc3825178.chain_643	4	STRG.27621.3,Trinity_GG_32493_c0_g1_i2,blat.proc3825178.chain_644	3
scaffold_21	starts_in_intron	8000202	8000202	-	asmbl_27885	none	blat.proc3825160.chain_1503	1	STRG.24336.1,STRG.24336.2,STRG.24336.3,STRG.24336.4,blat.proc3825160.chain_1499,blat.proc3825160.chain_1500,blat.proc3825160.chain_1501,blat.proc3825160.chain_1502	8
scaffold_1	alt_donor	12327542	12327543	+	asmbl_2197	none	STRG.846.1,blat.proc3825164.chain_1017	2	STRG.846.3	1
scaffold_17	alt_acceptor	1718251	1718252	-	asmbl_17728,asmbl_17730	none	STRG.20006.1,STRG.20006.2,blat.proc3825158.chain_1003	3	STRG.20006.3	1
scaffold_9	alt_donor	3676840	3676841	-	asmbl_54921,asmbl_54926,asmbl_54927,asmbl_54928	none	STRG.10993.1,STRG.10993.5,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	6	STRG.10993.4,Trinity_GG_6077_c0_g4_i1,blat.proc3825152.chain_3221	3
scaffold_13	retained_intron	5802919	5803440	+	asmbl_10903	none	blat.proc3825172.chain_711	1	STRG.15896.1,STRG.15896.2,blat.proc3825172.chain_706	3
scaffold_5	spliced_intron	9085103	9085212	+	asmbl_45599,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6	blat.proc3825166.chain_2474,blat.proc3825166.chain_2476	2
scaffold_17	retained_exon	9827344	9827415	-	asmbl_18197,asmbl_18198,asmbl_18199	none	STRG.20598.1,STRG.20598.4,STRG.20598.5,blat.proc3825158.chain_1556,blat.proc3825158.chain_1557	5	STRG.20598.2,STRG.20598.3,blat.proc3825158.chain_1555,blat.proc3825158.chain_1558	4
scaffold_5	alt_acceptor	10244638	10244639	-	asmbl_44330	none	STRG.6325.2	1	STRG.6325.1,Trinity_GG_3535_c0_g1_i2,blat.proc3825150.chain_2473	3
scaffold_8	retained_intron	5968927	5969108	+	asmbl_52918	none	blat.proc3825168.chain_2578	1	STRG.10007.1,blat.proc3825168.chain_2577,blat.proc3825168.chain_2579	3
scaffold_1	retained_intron	6299655	6299772	-	asmbl_347,asmbl_349	none	STRG.427.1,STRG.427.3,blat.proc3825148.chain_325,blat.proc3825148.chain_330,blat.proc3825148.chain_331	5	STRG.427.2,blat.proc3825148.chain_327	2
scaffold_16	ends_in_intron	4910911	4910911	-	asmbl_17082	none	Trinity_GG_10809_c0_g1_i2,blat.proc3825158.chain_385	2	STRG.19268.1,STRG.19268.2,STRG.19268.3,Trinity_GG_10809_c0_g1_i3,blat.proc3825158.chain_384	5
scaffold_2	spliced_intron	899248	899414	+	asmbl_24147,asmbl_24149,asmbl_24150	none	STRG.1569.1,STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721,blat.proc3825164.chain_1722	6	STRG.1569.2,Trinity_GG_18211_c0_g1_i4,blat.proc3825164.chain_1718	3
scaffold_5	starts_in_intron	8131981	8131981	+	asmbl_45532	none	blat.proc3825166.chain_2389	1	STRG.6188.2,blat.proc3825166.chain_2392	2
scaffold_2	spliced_intron	4838798	4839029	-	asmbl_23103	none	STRG.1905.1	1	blat.proc3825148.chain_1918,blat.proc3825148.chain_1922	2
scaffold_17	alternate_exon	2358091	2358219	+	asmbl_18645	none	blat.proc3825174.chain_910	1	STRG.20030.4,STRG.20030.5,STRG.20030.6	3
scaffold_17	alt_acceptor	11567922	11567923	+	asmbl_19239	none	STRG.20703.2	1	STRG.20703.3	1
scaffold_7	ends_in_intron	13018775	13018775	-	asmbl_51284	none	blat.proc3825152.chain_1809	1	STRG.9415.1	1
scaffold_12	skipped_exon	12451859	12451997	+	asmbl_8004	none	STRG.15151.2	1	STRG.15151.3	1
scaffold_10	starts_in_intron	13782271	13782271	+	asmbl_3618	none	Trinity_GG_24448_c0_g1_i5,blat.proc3825170.chain_1563	2	STRG.12979.1,STRG.12979.2,STRG.12979.3	3
scaffold_15	alt_donor	4964484	4964485	+	asmbl_15184	none	STRG.18207.1	1	STRG.18207.2,STRG.18207.3,Trinity_GG_27299_c0_g1_i8,Trinity_GG_27299_c0_g1_i9,blat.proc3825172.chain_2889,blat.proc3825172.chain_2890,blat.proc3825172.chain_2891,blat.proc3825172.chain_2892,blat.proc3825172.chain_2893,blat.proc3825172.chain_2895	10
scaffold_7	retained_intron	13204822	13204912	+	asmbl_50315,asmbl_50318	none	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1972,blat.proc3825168.chain_1974	3	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1973,blat.proc3825168.chain_1975	4
scaffold_2	retained_exon	4625159	4625170	+	asmbl_24373	none	blat.proc3825164.chain_2018	1	STRG.1884.1	1
scaffold_6	retained_exon	17647068	17647288	-	asmbl_49194	none	STRG.8458.1	1	STRG.8458.2	1
scaffold_19	retained_intron	11457726	11458092	-	asmbl_22389	none	blat.proc3825158.chain_3200	1	STRG.22479.1,Trinity_GG_12484_c0_g1_i4,blat.proc3825158.chain_3197,blat.proc3825158.chain_3198,blat.proc3825158.chain_3199,blat.proc3825158.chain_3201	6
scaffold_14	alt_acceptor	3431537	3431538	-	asmbl_13013	none	STRG.16936.2	1	STRG.16936.1,blat.proc3825156.chain_1770	2
scaffold_23	starts_in_intron	4951152	4951152	+	asmbl_31542	none	Trinity_GG_31594_c0_g1_i4,blat.proc3825176.chain_2825	2	STRG.25886.1,Trinity_GG_31594_c0_g1_i1,Trinity_GG_31594_c0_g1_i3,Trinity_GG_31594_c0_g1_i5,blat.proc3825176.chain_2822,blat.proc3825176.chain_2823,blat.proc3825176.chain_2824	7
scaffold_4	alternate_exon	3425978	3426021	-	asmbl_42440	none	STRG.4271.2	1	STRG.4271.1	1
scaffold_21	ends_in_intron	5519873	5519873	-	asmbl_27666	none	blat.proc3825160.chain_1267	1	STRG.24083.3,blat.proc3825160.chain_1261	2
scaffold_28	starts_in_intron	538225	538225	-	asmbl_37913	none	Trinity_GG_16392_c4_g1_i1,blat.proc3825162.chain_2448	2	STRG.29277.1,STRG.29277.2,STRG.29277.3,blat.proc3825162.chain_2442,blat.proc3825162.chain_2443	5
scaffold_5	starts_in_intron	223515	223515	-	asmbl_43760	none	blat.proc3825150.chain_1824	1	STRG.5590.1,blat.proc3825150.chain_1822	2
scaffold_6	retained_intron	12479552	12479961	+	asmbl_47399,asmbl_47401	none	STRG.8006.1,blat.proc3825168.chain_473,blat.proc3825168.chain_477	3	STRG.8006.4,blat.proc3825168.chain_472	2
scaffold_12	retained_intron	14045126	14045217	-	asmbl_8960	none	STRG.15234.3,blat.proc3825156.chain_40	2	STRG.15234.1,blat.proc3825156.chain_37	2
scaffold_17	retained_intron	10037011	10037314	-	asmbl_18223	none	Trinity_GG_11583_c0_g1_i2,blat.proc3825158.chain_1621	2	Trinity_GG_11583_c0_g1_i1,blat.proc3825158.chain_1618	2
scaffold_7	alt_donor	130248	130249	-	asmbl_50666	none	STRG.8595.5	1	STRG.8595.2,STRG.8595.7	2
scaffold_10	alt_acceptor	9427893	9427894	-	asmbl_4695	none	STRG.12685.2	1	STRG.12685.1,blat.proc3825154.chain_1303	2
scaffold_20	alt_donor	1876031	1876032	-	asmbl_25617	none	STRG.22923.1	1	blat.proc3825176.chain_121	1
scaffold_10	alt_donor	716852	716853	-	asmbl_3988,asmbl_3991	none	STRG.11957.1,blat.proc3825154.chain_545	2	STRG.11957.4	1
scaffold_6	spliced_intron	14639697	14639780	-	asmbl_49020	none	STRG.8233.1,blat.proc3825152.chain_642	2	blat.proc3825152.chain_643	1
scaffold_14	alternate_exon	11059673	11059998	-	asmbl_13443	none	STRG.17441.2	1	STRG.17441.1,blat.proc3825156.chain_2255	2
scaffold_18	retained_intron	9804399	9804418	-	asmbl_20090,asmbl_20091	none	STRG.21590.1,STRG.21590.3,Trinity_GG_12073_c0_g1_i1,Trinity_GG_12073_c0_g1_i2,blat.proc3825158.chain_2507,blat.proc3825158.chain_2508	6	STRG.21590.2	1
scaffold_16	retained_intron	8086575	8086765	-	asmbl_17227	none	Trinity_GG_10909_c1_g1_i1,blat.proc3825158.chain_575	2	STRG.19454.1,blat.proc3825158.chain_576	2
scaffold_1	alt_donor	5728876	5728877	+	asmbl_1764	none	STRG.387.2,blat.proc3825164.chain_504	2	STRG.387.1,blat.proc3825164.chain_502,blat.proc3825164.chain_503	3
scaffold_16	alt_acceptor	146834	146835	-	asmbl_16834	none	STRG.19010.1,Trinity_GG_10685_c0_g1_i8	2	Trinity_GG_10685_c0_g1_i3,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i7,blat.proc3825158.chain_147,blat.proc3825158.chain_148	5
scaffold_4	spliced_intron	5648812	5649001	-	asmbl_42616	none	STRG.4472.1,blat.proc3825150.chain_669	2	Trinity_GG_2475_c1_g1_i2,blat.proc3825150.chain_671,blat.proc3825150.chain_673,blat.proc3825150.chain_674	4
scaffold_21	spliced_intron	7008589	7008736	-	asmbl_27774	none	blat.proc3825160.chain_1391	1	blat.proc3825160.chain_1390	1
scaffold_14	retained_intron	176800	176929	-	asmbl_12787	none	STRG.16708.2	1	STRG.16708.1,blat.proc3825156.chain_1507,blat.proc3825156.chain_1509	3
scaffold_2	spliced_intron	14191448	14192045	-	asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23569,asmbl_23570	none	STRG.2416.1,STRG.2416.2,STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414	5	Trinity_GG_1338_c0_g1_i3,Trinity_GG_1338_c0_g1_i8,blat.proc3825148.chain_2412,blat.proc3825148.chain_2415,blat.proc3825148.chain_2416	5
scaffold_11	retained_exon	9458545	9459611	-	asmbl_6931	none	STRG.13976.1,blat.proc3825154.chain_2499	2	STRG.13976.2	1
scaffold_23	retained_intron	1739076	1739233	+	asmbl_31354	none	blat.proc3825176.chain_2573	1	blat.proc3825176.chain_2570,blat.proc3825176.chain_2571,blat.proc3825176.chain_2572	3
scaffold_21	alternate_exon	7914321	7914476	-	asmbl_27865	none	STRG.24325.4,blat.proc3825160.chain_1386	2	STRG.24325.1,blat.proc3825160.chain_1385	2
scaffold_18	retained_intron	8726003	8726193	+	asmbl_20858,asmbl_20861	none	STRG.21537.2,blat.proc3825174.chain_2615,blat.proc3825174.chain_2617	3	STRG.21537.1,blat.proc3825174.chain_2616,blat.proc3825174.chain_2619	3
scaffold_9	ends_in_intron	2798945	2798945	+	asmbl_53865	none	blat.proc3825168.chain_3435	1	STRG.10918.1,STRG.10918.2,STRG.10918.4,STRG.10918.5,STRG.10918.6,Trinity_GG_23372_c0_g1_i5,Trinity_GG_23372_c0_g1_i7,Trinity_GG_23372_c0_g1_i8,blat.proc3825168.chain_3427,blat.proc3825168.chain_3429,blat.proc3825168.chain_3431,blat.proc3825168.chain_3433	12
scaffold_28	starts_in_intron	1008947	1008947	-	asmbl_37959	none	STRG.29311.1	1	STRG.29311.2,blat.proc3825162.chain_2391,blat.proc3825162.chain_2392	3
scaffold_7	alt_acceptor	4498625	4498626	-	asmbl_50867	none	blat.proc3825152.chain_1302	1	STRG.8821.1,STRG.8821.2,Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1301,blat.proc3825152.chain_1303,blat.proc3825152.chain_1304	6
scaffold_15	ends_in_intron	15919475	15919475	+	asmbl_15847	none	STRG.18976.3	1	STRG.18976.1,STRG.18976.2,Trinity_GG_27681_c1_g1_i1,Trinity_GG_27681_c1_g1_i2,blat.proc3825172.chain_3551,blat.proc3825172.chain_3552	6
scaffold_21	starts_in_intron	4108814	4108814	+	asmbl_28507	none	blat.proc3825176.chain_1206	1	STRG.23987.1,STRG.23987.2,STRG.23987.3,blat.proc3825176.chain_1205,blat.proc3825176.chain_1207	5
scaffold_28	alternate_exon	6064739	6065170	+	asmbl_37618	none	STRG.29730.1	1	STRG.29730.2	1
scaffold_18	alt_acceptor	1877150	1877151	+	asmbl_20389,asmbl_20390	none	STRG.21076.1,STRG.21076.2,blat.proc3825174.chain_1963	3	STRG.21076.3	1
scaffold_15	alt_donor	13561766	13561767	-	asmbl_14640,asmbl_14642	none	STRG.18786.2,STRG.18786.3,blat.proc3825156.chain_3629	3	STRG.18786.1,blat.proc3825156.chain_3630	2
scaffold_13	spliced_intron	530723	531277	-	asmbl_9357	none	STRG.15450.2	1	STRG.15450.1,Trinity_GG_8669_c0_g1_i1,blat.proc3825156.chain_317	3
scaffold_28	ends_in_intron	3843816	3843816	+	asmbl_37499	none	Trinity_GG_33724_c1_g1_i1	1	STRG.29583.1,blat.proc3825178.chain_2787	2
scaffold_23	alt_donor	362407	362408	-	asmbl_30595	none	blat.proc3825160.chain_2722	1	STRG.25564.4,Trinity_GG_14303_c0_g1_i4,blat.proc3825160.chain_2721,blat.proc3825160.chain_2726	4
scaffold_4	retained_exon	4414503	4414706	+	asmbl_41245	none	STRG.4349.4,Trinity_GG_19749_c0_g1_i14,blat.proc3825166.chain_849	3	STRG.4349.1,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_851,blat.proc3825166.chain_853	5
scaffold_17	alt_donor	11567672	11567673	+	asmbl_19239	none	STRG.20703.2	1	STRG.20703.1,STRG.20703.3,STRG.20703.4,Trinity_GG_28635_c0_g1_i1,blat.proc3825174.chain_1548	5
scaffold_16	spliced_intron	4095539	4096600	+	asmbl_16175	none	blat.proc3825174.chain_61	1	Trinity_GG_27809_c0_g1_i8	1
scaffold_24	retained_intron	3655857	3656074	+	asmbl_32147	none	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3	STRG.26550.6	1
scaffold_1	retained_intron	1608748	1608955	-	asmbl_82	none	Trinity_GG_55_c0_g1_i2,blat.proc3825148.chain_96	2	STRG.112.1,blat.proc3825148.chain_97	2
scaffold_8	ends_in_intron	7451958	7451958	-	asmbl_51910	none	Trinity_GG_5591_c0_g1_i1,blat.proc3825152.chain_2288	2	STRG.10072.1,STRG.10072.2,blat.proc3825152.chain_2289,blat.proc3825152.chain_2290	4
scaffold_14	alt_donor	1111247	1111248	+	asmbl_11808	none	STRG.16770.3	1	STRG.16770.2,blat.proc3825172.chain_1531	2
scaffold_1	spliced_intron	5645145	5645265	+	asmbl_1738,asmbl_1741	none	STRG.360.2,STRG.360.4,blat.proc3825164.chain_424,blat.proc3825164.chain_426	4	STRG.360.1,STRG.360.3,STRG.360.5,blat.proc3825164.chain_425,blat.proc3825164.chain_428	5
scaffold_14	retained_intron	8338998	8339359	-	asmbl_13289	none	blat.proc3825156.chain_2080	1	STRG.17267.1,blat.proc3825156.chain_2081	2
scaffold_5	starts_in_intron	15487023	15487023	+	asmbl_45994	none	Trinity_GG_20991_c0_g1_i1,blat.proc3825166.chain_2907	2	STRG.6736.2	1
scaffold_7	alt_acceptor	5183050	5183051	-	asmbl_50876	none	STRG.8855.3	1	STRG.8855.2,blat.proc3825152.chain_1306	2
scaffold_2	spliced_intron	888327	888347	+	asmbl_24135	none	STRG.1565.4	1	STRG.1565.1,STRG.1565.2,STRG.1565.3,STRG.1565.5,Trinity_GG_18210_c0_g1_i1,blat.proc3825164.chain_1711	6
scaffold_23	alternate_exon	330880	331185	-	asmbl_30585	none	STRG.25551.3,blat.proc3825160.chain_2699	2	STRG.25551.1,STRG.25551.2,blat.proc3825160.chain_2698	3
scaffold_1	retained_intron	4386393	4386813	-	asmbl_185	none	STRG.269.2,Trinity_GG_92_c0_g1_i1,blat.proc3825148.chain_148	3	STRG.269.1,blat.proc3825148.chain_147	2
scaffold_6	alt_acceptor	10867070	10867071	+	asmbl_47299	none	STRG.7900.1,blat.proc3825168.chain_361	2	STRG.7900.2,blat.proc3825168.chain_362	2
scaffold_21	skipped_exon	7725997	7727810	+	asmbl_28765	none	STRG.24316.1	1	STRG.24316.3,blat.proc3825176.chain_1476	2
scaffold_3	starts_in_intron	1546397	1546397	+	asmbl_39863	none	STRG.2984.3,blat.proc3825164.chain_3126	2	STRG.2984.2,blat.proc3825164.chain_3129	2
scaffold_4	spliced_intron	12571369	12571452	-	asmbl_42930	none	STRG.4898.1,blat.proc3825150.chain_1087	2	blat.proc3825150.chain_1085	1
scaffold_14	alternate_exon	1613981	1616642	+	asmbl_11830,asmbl_11831,asmbl_11832	none	STRG.16804.1,STRG.16804.2,STRG.16804.3,Trinity_GG_26566_c0_g2_i2,Trinity_GG_26566_c1_g1_i2,blat.proc3825172.chain_1587,blat.proc3825172.chain_1588,blat.proc3825172.chain_1591	8	Trinity_GG_26566_c0_g2_i3,blat.proc3825172.chain_1590	2
scaffold_7	starts_in_intron	13952981	13952981	+	asmbl_50389	none	STRG.9492.2	1	STRG.9492.1,Trinity_GG_22583_c0_g1_i2,Trinity_GG_22583_c0_g1_i3,Trinity_GG_22583_c0_g1_i5,blat.proc3825168.chain_2008,blat.proc3825168.chain_2009,blat.proc3825168.chain_2010	7
scaffold_5	alt_acceptor	1082466	1082467	-	asmbl_43818	none	STRG.5659.2	1	STRG.5659.1,Trinity_GG_3195_c0_g1_i3,blat.proc3825150.chain_1885	3
scaffold_10	starts_in_intron	3416691	3416691	+	asmbl_3040	none	STRG.12172.2	1	STRG.12172.1	1
scaffold_27	starts_in_intron	1113964	1113964	+	asmbl_35996	none	Trinity_GG_33154_c0_g1_i2,blat.proc3825178.chain_1757	2	STRG.28611.1,STRG.28611.2,Trinity_GG_33154_c0_g1_i1,blat.proc3825178.chain_1758	4
scaffold_28	retained_intron	575733	575994	-	asmbl_37917	none	STRG.29279.3,blat.proc3825162.chain_2427	2	STRG.29279.1,STRG.29279.2,blat.proc3825162.chain_2429	3
scaffold_1	starts_in_intron	20610477	20610477	+	asmbl_2644	none	Trinity_GG_18111_c0_g1_i1,Trinity_GG_18111_c0_g1_i3,blat.proc3825164.chain_1502,blat.proc3825164.chain_1504	4	STRG.1408.1,blat.proc3825164.chain_1503	2
scaffold_12	skipped_exon	6417045	6417345	+	asmbl_7681,asmbl_7683	none	STRG.14753.3,blat.proc3825170.chain_3274	2	STRG.14753.1,STRG.14753.2,blat.proc3825170.chain_3273,blat.proc3825170.chain_3275	4
scaffold_28	alt_acceptor	4205203	4205204	+	asmbl_37520	none	STRG.29616.1	1	STRG.29616.4,STRG.29616.5,blat.proc3825178.chain_2815	3
scaffold_17	retained_intron	14646820	14646843	-	asmbl_18443,asmbl_18444	none	STRG.20937.1,Trinity_GG_11743_c0_g1_i2	2	blat.proc3825158.chain_1903,blat.proc3825158.chain_1904	2
scaffold_12	spliced_intron	10190123	10190194	+	asmbl_7910	none	STRG.14991.2	1	STRG.14991.1	1
scaffold_24	alt_acceptor	10379598	10379599	-	asmbl_33186	none	STRG.27000.2	1	STRG.27000.1	1
scaffold_11	skipped_exon	17099044	17101007	+	asmbl_6195	none	STRG.14376.1	1	STRG.14376.2,STRG.14376.3,blat.proc3825170.chain_2932,blat.proc3825170.chain_2933,blat.proc3825170.chain_2934	5
scaffold_15	starts_in_intron	4095873	4095873	+	asmbl_15123	none	blat.proc3825172.chain_2819	1	STRG.18154.1,STRG.18154.2,blat.proc3825172.chain_2821,blat.proc3825172.chain_2822	4
scaffold_25	ends_in_intron	3084872	3084872	-	asmbl_34094,asmbl_34095	none	STRG.27251.5,blat.proc3825162.chain_559	2	STRG.27251.1,STRG.27251.2,STRG.27251.3,STRG.27251.4,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555	7
scaffold_28	alternate_exon	5232621	5232900	-	asmbl_38265	none	Trinity_GG_16598_c0_g1_i11,blat.proc3825162.chain_2783	2	Trinity_GG_16598_c0_g1_i3,blat.proc3825162.chain_2784	2
scaffold_11	retained_intron	176324	176605	+	asmbl_5264,asmbl_5265,asmbl_5267	none	Trinity_GG_24602_c0_g1_i3,blat.proc3825170.chain_1809,blat.proc3825170.chain_1811,blat.proc3825170.chain_1812	4	blat.proc3825170.chain_1810	1
scaffold_18	alt_donor	3217969	3217970	-	asmbl_19752	none	STRG.21159.2,Trinity_GG_11855_c0_g1_i2,blat.proc3825158.chain_2129	3	STRG.21159.1,Trinity_GG_11855_c0_g1_i1,blat.proc3825158.chain_2130	3
scaffold_3	spliced_intron	10937352	10937449	-	asmbl_39122	none	STRG.3545.2,blat.proc3825148.chain_3370	2	STRG.3545.1,STRG.3545.4,blat.proc3825148.chain_3371	3
scaffold_8	alternate_exon	3486822	3486891	+	asmbl_52770	none	STRG.9846.2	1	STRG.9846.1,blat.proc3825168.chain_2395,blat.proc3825168.chain_2396	3
scaffold_25	alt_acceptor	1553787	1553788	-	asmbl_34040	none	STRG.27185.1	1	STRG.27185.2	1
scaffold_8	alt_acceptor	14395594	14395595	-	asmbl_52305	none	STRG.10525.1,blat.proc3825152.chain_2661	2	STRG.10525.2,blat.proc3825152.chain_2659	2
scaffold_5	starts_in_intron	15042681	15042681	-	asmbl_44640,asmbl_44641	none	STRG.6698.1,blat.proc3825150.chain_2833,blat.proc3825150.chain_2834	3	STRG.6698.2,STRG.6698.3,blat.proc3825150.chain_2828,blat.proc3825150.chain_2829	4
scaffold_14	alternate_exon	13647474	13647921	-	asmbl_13655	none	STRG.17661.1,blat.proc3825156.chain_2501	2	STRG.17661.2	1
scaffold_4	alt_acceptor	10451857	10451858	-	asmbl_42849,asmbl_42850	none	STRG.4796.2,blat.proc3825150.chain_914	2	STRG.4796.1,blat.proc3825150.chain_912,blat.proc3825150.chain_913	3
scaffold_27	alternate_exon	5656886	5663797	+	asmbl_36350,asmbl_36351	none	STRG.28973.1,STRG.28973.2,blat.proc3825178.chain_2093,blat.proc3825178.chain_2094,blat.proc3825178.chain_2095	5	STRG.28973.3,Trinity_GG_33308_c0_g1_i1,blat.proc3825178.chain_2096	3
scaffold_15	alt_donor	1263957	1263958	+	asmbl_14997,asmbl_14998	none	blat.proc3825172.chain_2635,blat.proc3825172.chain_2636	2	STRG.17942.1	1
scaffold_1	alternate_exon	5963158	5963261	+	asmbl_1805	none	STRG.400.1,blat.proc3825164.chain_540	2	STRG.400.2,STRG.400.3,Trinity_GG_17575_c0_g1_i4,blat.proc3825164.chain_542	4
scaffold_23	alt_acceptor	2219155	2219156	-	asmbl_30712,asmbl_30713,asmbl_30717	none	STRG.25698.2,STRG.25698.5,STRG.25698.6	3	STRG.25698.1,STRG.25698.3	2
scaffold_24	skipped_exon	33655	34681	-	asmbl_32687	none	STRG.26314.5	1	Trinity_GG_14706_c0_g1_i1,blat.proc3825160.chain_3434	2
scaffold_14	alt_acceptor	8093460	8093461	-	asmbl_13242	none	STRG.17229.3,Trinity_GG_9662_c0_g1_i5,blat.proc3825156.chain_2044	3	STRG.17229.2,STRG.17229.4,Trinity_GG_9662_c0_g1_i1,Trinity_GG_9662_c0_g1_i4,blat.proc3825156.chain_2042,blat.proc3825156.chain_2043	6
scaffold_10	ends_in_intron	11500627	11500627	+	asmbl_3465	none	STRG.12803.1,Trinity_GG_24350_c0_g1_i3,blat.proc3825170.chain_1362	3	blat.proc3825170.chain_1363	1
scaffold_1	alt_acceptor	13518391	13518392	-	asmbl_815	none	STRG.965.1,blat.proc3825148.chain_944	2	STRG.965.2,blat.proc3825148.chain_945	2
scaffold_18	alt_acceptor	206525	206526	+	asmbl_20272,asmbl_20273,asmbl_20277,asmbl_20278,asmbl_20279	none	STRG.20974.1,STRG.20974.2,Trinity_GG_28858_c0_g1_i4,blat.proc3825174.chain_1917,blat.proc3825174.chain_1918,blat.proc3825174.chain_1920,blat.proc3825174.chain_1921,blat.proc3825174.chain_1922	8	STRG.20974.3,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1919	3
scaffold_17	spliced_intron	1303722	1303950	-	asmbl_17693,asmbl_17694,asmbl_17697,asmbl_17698,asmbl_17699	none	STRG.19975.1,STRG.19975.2,blat.proc3825158.chain_1029,blat.proc3825158.chain_1030,blat.proc3825158.chain_1031,blat.proc3825158.chain_1032,blat.proc3825158.chain_1034	7	blat.proc3825158.chain_1035	1
scaffold_3	alt_acceptor	17696752	17696753	+	asmbl_40689	none	STRG.3991.2,blat.proc3825166.chain_441	2	STRG.3991.1	1
scaffold_27	skipped_exon	6610373	6611472	-	asmbl_37067	none	STRG.29032.2,blat.proc3825162.chain_2253	2	STRG.29032.1,blat.proc3825162.chain_2254	2
scaffold_9	retained_intron	16561348	16563669	-	asmbl_55580	none	STRG.11806.6,Trinity_GG_6524_c1_g1_i1,blat.proc3825154.chain_277	3	STRG.11806.1,STRG.11806.5,blat.proc3825154.chain_266,blat.proc3825154.chain_270,blat.proc3825154.chain_271	5
scaffold_20	starts_in_intron	7459164	7459164	-	asmbl_25901	none	STRG.23309.2,blat.proc3825160.chain_440	2	STRG.23309.1,blat.proc3825160.chain_441	2
scaffold_10	alternate_exon	11882544	11882566	-	asmbl_4793	none	STRG.12826.1	1	STRG.12826.2	1
scaffold_6	spliced_intron	5752193	5752361	+	asmbl_46973,asmbl_46974	none	STRG.7534.1,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734	3	blat.proc3825166.chain_3735,blat.proc3825166.chain_3736	2
scaffold_10	retained_intron	5495263	5495288	+	asmbl_3176	none	Trinity_GG_24173_c0_g1_i2	1	STRG.12383.1,blat.proc3825170.chain_1058	2
scaffold_10	alternate_exon	11105577	11105904	+	asmbl_3450,asmbl_3451	none	STRG.12779.1,blat.proc3825170.chain_1378,blat.proc3825170.chain_1379	3	STRG.12779.2	1
scaffold_21	alternate_exon	7506929	7507041	-	asmbl_27831,asmbl_27833	none	STRG.24282.3,blat.proc3825160.chain_1440	2	STRG.24282.1,STRG.24282.2,STRG.24282.4,blat.proc3825160.chain_1439	4
scaffold_21	ends_in_intron	6130198	6130198	+	asmbl_28619	none	blat.proc3825176.chain_1342	1	STRG.24150.1,STRG.24150.2,blat.proc3825176.chain_1341,blat.proc3825176.chain_1343	4
scaffold_28	retained_intron	4267785	4268006	+	asmbl_37533	none	STRG.29620.2,blat.proc3825178.chain_2801	2	STRG.29620.1,Trinity_GG_33733_c0_g1_i1,blat.proc3825178.chain_2802	3
scaffold_12	alt_donor	14903735	14903736	+	asmbl_8096	none	STRG.15275.2,blat.proc3825172.chain_25	2	STRG.15275.1,blat.proc3825172.chain_24	2
scaffold_13	alt_donor	16142562	16142563	+	asmbl_11560	none	STRG.16655.1	1	blat.proc3825172.chain_1451	1
scaffold_21	retained_intron	7009179	7009301	-	asmbl_27776	none	blat.proc3825160.chain_1394	1	STRG.24233.1,STRG.24233.2,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393,blat.proc3825160.chain_1395	7
scaffold_11	starts_in_intron	13462351	13462351	-	asmbl_7132	none	Trinity_GG_7945_c0_g1_i2,blat.proc3825154.chain_2750	2	STRG.14207.1,STRG.14207.2,STRG.14207.3,Trinity_GG_7945_c0_g1_i1,Trinity_GG_7945_c0_g1_i4,Trinity_GG_7945_c0_g1_i5,blat.proc3825154.chain_2747,blat.proc3825154.chain_2748,blat.proc3825154.chain_2749	9
scaffold_1	retained_intron	18028833	18029186	-	asmbl_1078	none	blat.proc3825164.chain_1345	1	STRG.1268.7	1
scaffold_23	starts_in_intron	6622504	6622504	+	asmbl_31630	none	STRG.26010.3,blat.proc3825176.chain_2890	2	STRG.26010.1,STRG.26010.2,blat.proc3825176.chain_2888,blat.proc3825176.chain_2889	4
scaffold_16	ends_in_intron	12650884	12650884	+	asmbl_16643	none	STRG.19759.2	1	STRG.19759.1,blat.proc3825174.chain_662,blat.proc3825174.chain_663	3
scaffold_11	alternate_exon	7673242	7673314	-	asmbl_6797,asmbl_6798	none	STRG.13780.2,STRG.13780.3	2	STRG.13780.1,blat.proc3825154.chain_2374	2
scaffold_18	spliced_intron	1860254	1860365	+	asmbl_20383,asmbl_20384	none	STRG.21073.1,STRG.21073.2,blat.proc3825174.chain_1971	3	blat.proc3825174.chain_1972	1
scaffold_16	alt_acceptor	810169	810170	-	asmbl_16908,asmbl_16912	none	STRG.19064.1,STRG.19064.3,blat.proc3825158.chain_130	3	STRG.19064.2,blat.proc3825158.chain_128	2
scaffold_26	alt_donor	2789061	2789062	+	asmbl_34756	none	STRG.27972.1,Trinity_GG_32740_c0_g1_i1,blat.proc3825178.chain_1021	3	Trinity_GG_32740_c0_g1_i3,blat.proc3825178.chain_1022	2
scaffold_5	alt_acceptor	11992233	11992234	-	asmbl_44431	none	STRG.6453.5	1	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3
scaffold_5	alt_acceptor	10244625	10244626	-	asmbl_44329	none	STRG.6325.1,Trinity_GG_3535_c0_g1_i2,blat.proc3825150.chain_2473	3	STRG.6325.2	1
scaffold_10	alt_acceptor	17687722	17687723	+	asmbl_3790	none	STRG.13223.1	1	STRG.13223.2	1
scaffold_26	starts_in_intron	4324247	4324247	-	asmbl_35547	none	blat.proc3825162.chain_1343	1	STRG.28149.1,STRG.28149.2,STRG.28149.3,STRG.28149.4,STRG.28149.5,blat.proc3825162.chain_1350	6
scaffold_19	alternate_exon	12484718	12485842	-	asmbl_22504	none	STRG.22589.1,blat.proc3825158.chain_3347	2	STRG.22589.2,Trinity_GG_12561_c0_g1_i3,blat.proc3825158.chain_3345	3
scaffold_11	spliced_intron	3110813	3110881	-	asmbl_6528	none	STRG.13443.2,blat.proc3825154.chain_1983	2	STRG.13443.1,blat.proc3825154.chain_1984	2
scaffold_11	spliced_intron	4666033	4666246	+	asmbl_5494,asmbl_5496	none	STRG.13563.2,blat.proc3825170.chain_2046	2	blat.proc3825170.chain_2045,blat.proc3825170.chain_2047	2
scaffold_21	alternate_exon	7915203	7915341	-	asmbl_27866	none	STRG.24325.1,blat.proc3825160.chain_1385	2	STRG.24325.4,blat.proc3825160.chain_1386	2
scaffold_13	alt_donor	14864373	14864374	-	asmbl_10210,asmbl_10212	none	STRG.16531.2,blat.proc3825156.chain_1362	2	STRG.16531.3,blat.proc3825156.chain_1363	2
scaffold_3	spliced_intron	6213194	6213223	-	asmbl_38924,asmbl_38929,asmbl_38930	none	STRG.3267.1,STRG.3267.2,STRG.3267.3	3	Trinity_GG_1744_c0_g1_i1	1
scaffold_20	alt_donor	11566328	11566329	+	asmbl_27077	none	STRG.23663.1,blat.proc3825176.chain_869	2	STRG.23663.2,blat.proc3825176.chain_868	2
scaffold_3	ends_in_intron	7920601	7920601	-	asmbl_39004	none	Trinity_GG_1826_c0_g2_i1,blat.proc3825148.chain_3256	2	STRG.3377.1,STRG.3377.2,STRG.3377.3,STRG.3377.4,blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	6
scaffold_9	alternate_exon	6920388	6921103	-	asmbl_55101	none	blat.proc3825152.chain_3450	1	blat.proc3825152.chain_3452	1
scaffold_10	spliced_intron	17325750	17326440	-	asmbl_5053	none	STRG.13182.2,blat.proc3825154.chain_1776	2	STRG.13182.3,blat.proc3825154.chain_1777	2
scaffold_18	starts_in_intron	13808392	13808392	+	asmbl_21045	none	Trinity_GG_29370_c1_g1_i1,blat.proc3825174.chain_2843	2	Trinity_GG_29370_c1_g1_i3,Trinity_GG_29370_c1_g1_i4,blat.proc3825174.chain_2840,blat.proc3825174.chain_2841	4
scaffold_15	starts_in_intron	4967934	4967934	-	asmbl_14172	none	STRG.18209.4,blat.proc3825156.chain_3058,blat.proc3825156.chain_3059	3	STRG.18209.2,STRG.18209.5,Trinity_GG_10249_c0_g1_i9,blat.proc3825156.chain_3060	4
scaffold_20	ends_in_intron	5840615	5840615	+	asmbl_26633	none	blat.proc3825176.chain_373	1	STRG.23183.1,blat.proc3825176.chain_372,blat.proc3825176.chain_374	3
scaffold_14	starts_in_intron	13224607	13224607	+	asmbl_12463	none	Trinity_GG_26989_c1_g1_i1,blat.proc3825172.chain_2336	2	STRG.17622.2,blat.proc3825172.chain_2329	2
scaffold_8	alt_acceptor	4873929	4873930	+	asmbl_52869,asmbl_52871	none	STRG.9952.2,STRG.9952.3,blat.proc3825168.chain_2518,blat.proc3825168.chain_2519	4	STRG.9952.4,Trinity_GG_22853_c0_g1_i4,blat.proc3825168.chain_2514,blat.proc3825168.chain_2515	4
scaffold_6	ends_in_intron	13126041	13126041	-	asmbl_48877	none	Trinity_GG_4587_c0_g1_i1,blat.proc3825152.chain_464	2	STRG.8069.1,STRG.8069.2,blat.proc3825152.chain_466,blat.proc3825152.chain_467	4
scaffold_9	alt_acceptor	13297182	13297183	-	asmbl_55422	none	STRG.11628.2	1	STRG.11628.1,STRG.11628.3,STRG.11628.5	3
scaffold_26	spliced_intron	7900944	7901028	+	asmbl_35153,asmbl_35154	none	STRG.28410.1,STRG.28410.2,Trinity_GG_32991_c0_g1_i3,blat.proc3825178.chain_1456,blat.proc3825178.chain_1458	5	blat.proc3825178.chain_1457	1
scaffold_17	alternate_exon	2629779	2630005	+	asmbl_18669,asmbl_18670,asmbl_18674	none	STRG.20060.1,STRG.20060.2,STRG.20060.3,Trinity_GG_28292_c0_g1_i1,Trinity_GG_28292_c0_g1_i3,blat.proc3825174.chain_926,blat.proc3825174.chain_929	7	blat.proc3825174.chain_928	1
scaffold_7	ends_in_intron	17914927	17914927	-	asmbl_51440	none	Trinity_GG_5411_c2_g1_i1,blat.proc3825152.chain_1969	2	STRG.9631.1,blat.proc3825152.chain_1967	2
scaffold_8	alt_acceptor	9643588	9643589	+	asmbl_53092,asmbl_53094,asmbl_53096,asmbl_53097,asmbl_53098	none	STRG.10219.1,STRG.10219.2,blat.proc3825168.chain_2808,blat.proc3825168.chain_2809,blat.proc3825168.chain_2810	5	STRG.10219.3,STRG.10219.5	2
scaffold_26	retained_intron	5953595	5953639	-	asmbl_35654,asmbl_35655	none	STRG.28307.1,blat.proc3825162.chain_1520,blat.proc3825162.chain_1521	3	STRG.28307.2	1
scaffold_5	starts_in_intron	3591944	3591944	-	asmbl_43924	none	STRG.5831.1	1	STRG.5831.5	1
scaffold_15	alt_acceptor	165859	165860	+	asmbl_14947	none	STRG.17873.2	1	STRG.17873.1	1
scaffold_23	alt_acceptor	2414915	2414916	+	asmbl_31406	none	STRG.25716.3	1	STRG.25716.1,STRG.25716.2,Trinity_GG_31508_c0_g1_i1,blat.proc3825176.chain_2676	4
scaffold_6	ends_in_intron	13272843	13272843	+	asmbl_47512,asmbl_47515	none	STRG.8090.1,blat.proc3825168.chain_521,blat.proc3825168.chain_522	3	STRG.8090.2,STRG.8090.3	2
scaffold_9	alt_acceptor	9706781	9706782	+	asmbl_54229	none	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_142	3	STRG.11349.1,blat.proc3825170.chain_140,blat.proc3825170.chain_144	3
scaffold_7	alt_acceptor	18619282	18619283	-	asmbl_51483,asmbl_51485,asmbl_51487,asmbl_51488	none	STRG.9681.1,STRG.9681.5,blat.proc3825152.chain_2027,blat.proc3825152.chain_2029	4	STRG.9681.2,STRG.9681.4,blat.proc3825152.chain_2028	3
scaffold_14	starts_in_intron	9645417	9645417	-	asmbl_13391	none	blat.proc3825156.chain_2103	1	STRG.17354.1,blat.proc3825156.chain_2104,blat.proc3825156.chain_2105	3
scaffold_19	starts_in_intron	12063186	12063186	-	asmbl_22446	none	Trinity_GG_12528_c0_g1_i2,blat.proc3825158.chain_3282	2	STRG.22526.1,Trinity_GG_12528_c0_g1_i1,blat.proc3825158.chain_3283	3
scaffold_19	alt_acceptor	2780788	2780789	+	asmbl_21281,asmbl_21282	none	STRG.21962.4,STRG.21962.5	2	STRG.21962.1,STRG.21962.2,STRG.21962.3,blat.proc3825174.chain_2998	4
scaffold_3	retained_intron	1531004	1531031	-	asmbl_38713	none	STRG.2979.1,Trinity_GG_1580_c0_g1_i1,blat.proc3825148.chain_2808	3	STRG.2979.2	1
scaffold_3	ends_in_intron	13160798	13160798	+	asmbl_40426	none	blat.proc3825166.chain_137	1	STRG.3681.1,STRG.3681.2,blat.proc3825166.chain_135,blat.proc3825166.chain_136	4
scaffold_2	alt_donor	13397950	13397951	+	asmbl_24843	none	STRG.2359.2,blat.proc3825164.chain_2560	2	STRG.2359.3,Trinity_GG_18642_c0_g1_i5,blat.proc3825164.chain_2559	3
scaffold_6	alt_acceptor	8460400	8460401	+	asmbl_47127	none	STRG.7725.2,blat.proc3825168.chain_153	2	STRG.7725.3	1
scaffold_11	alt_donor	6574227	6574228	-	asmbl_6723	none	STRG.13700.2	1	STRG.13700.1,blat.proc3825154.chain_2276	2
scaffold_28	ends_in_intron	7157221	7157221	+	asmbl_37636	none	blat.proc3825178.chain_2929	1	STRG.29775.1,STRG.29775.2,STRG.29775.3,blat.proc3825178.chain_2925,blat.proc3825178.chain_2926,blat.proc3825178.chain_2927,blat.proc3825178.chain_2928	7
scaffold_19	alt_acceptor	12687757	12687758	-	asmbl_22530	none	blat.proc3825158.chain_3367	1	STRG.22592.1,STRG.22592.2,blat.proc3825158.chain_3366,blat.proc3825158.chain_3368,blat.proc3825158.chain_3369	5
scaffold_3	alt_donor	10983860	10983861	-	asmbl_39132	none	STRG.3536.1	1	STRG.3536.2	1
scaffold_2	skipped_exon	6639380	6640322	-	asmbl_23213,asmbl_23217	none	STRG.2030.3,blat.proc3825148.chain_2034	2	STRG.2030.1,STRG.2030.2,blat.proc3825148.chain_2032,blat.proc3825148.chain_2033,blat.proc3825148.chain_2037	5
scaffold_12	starts_in_intron	4201500	4201500	-	asmbl_8384	none	blat.proc3825154.chain_3062	1	STRG.14599.1,blat.proc3825154.chain_3063	2
scaffold_24	starts_in_intron	9953064	9953064	-	asmbl_33159	none	Trinity_GG_15063_c0_g1_i6	1	STRG.26968.1,STRG.26968.2,STRG.26968.6,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	8
scaffold_9	retained_exon	361629	362292	+	asmbl_53756	none	STRG.10777.1,blat.proc3825168.chain_3314	2	STRG.10777.2,blat.proc3825168.chain_3315	2
scaffold_26	alt_donor	3789705	3789706	+	asmbl_34833	none	STRG.28067.1	1	STRG.28067.2,STRG.28067.3	2
scaffold_3	alt_donor	13419480	13419481	-	asmbl_39264	none	STRG.3693.4	1	STRG.3693.3	1
scaffold_19	retained_intron	6213363	6213463	+	asmbl_21402	none	blat.proc3825174.chain_3105	1	STRG.22153.1,blat.proc3825174.chain_3106	2
scaffold_15	alternate_exon	12029899	12030066	+	asmbl_15516	none	Trinity_GG_27537_c0_g1_i1,blat.proc3825172.chain_3278	2	STRG.18644.3,Trinity_GG_27537_c0_g1_i4,blat.proc3825172.chain_3277	3
scaffold_17	alternate_exon	3959344	3960525	-	asmbl_17828	none	STRG.20151.1,blat.proc3825158.chain_1100	2	STRG.20151.2,blat.proc3825158.chain_1101	2
scaffold_1	ends_in_intron	7291810	7291810	-	asmbl_430	none	Trinity_GG_240_c0_g1_i2	1	STRG.521.1,blat.proc3825148.chain_438	2
scaffold_3	alt_donor	10276770	10276771	+	asmbl_40252	none	blat.proc3825164.chain_3735	1	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3
scaffold_19	skipped_exon	12337312	12337821	+	asmbl_21790	none	blat.proc3825174.chain_3513	1	STRG.22564.1,STRG.22564.2,blat.proc3825174.chain_3511,blat.proc3825174.chain_3512	4
scaffold_15	alt_donor	2782603	2782604	-	asmbl_14047	none	blat.proc3825156.chain_2898	1	STRG.18069.2,STRG.18069.3	2
scaffold_2	starts_in_intron	4008465	4008465	+	asmbl_24329	none	blat.proc3825164.chain_1985	1	STRG.1839.1,STRG.1839.3,blat.proc3825164.chain_1984	3
scaffold_14	alternate_exon	317043	319048	-	asmbl_12818	none	blat.proc3825156.chain_1532	1	STRG.16723.1	1
scaffold_26	retained_intron	3791186	3791394	+	asmbl_34837	none	blat.proc3825178.chain_1153	1	STRG.28068.3,blat.proc3825178.chain_1145	2
scaffold_1	ends_in_intron	19006653	19006653	+	asmbl_2575	none	STRG.1324.1	1	STRG.1324.2,STRG.1324.4	2
scaffold_1	spliced_intron	20354313	20354546	+	asmbl_2619,asmbl_2620,asmbl_2622,asmbl_2624	none	STRG.1396.1,STRG.1396.6,STRG.1396.8,blat.proc3825164.chain_1585,blat.proc3825164.chain_1587,blat.proc3825164.chain_1588	6	blat.proc3825164.chain_1584	1
scaffold_21	ends_in_intron	5453563	5453563	+	asmbl_28569	none	STRG.24079.3,blat.proc3825176.chain_1317	2	STRG.24079.1,Trinity_GG_30672_c0_g2_i4,blat.proc3825176.chain_1319	3
scaffold_11	spliced_intron	8080714	8080789	+	asmbl_5713,asmbl_5715,asmbl_5716	none	STRG.13816.1,Trinity_GG_24895_c0_g1_i1,Trinity_GG_24895_c0_g1_i2,Trinity_GG_24895_c0_g1_i3,blat.proc3825170.chain_2310,blat.proc3825170.chain_2311,blat.proc3825170.chain_2312	7	Trinity_GG_24895_c0_g1_i5,blat.proc3825170.chain_2309	2
scaffold_9	starts_in_intron	6921892	6921892	-	asmbl_55100	none	STRG.11207.1,blat.proc3825152.chain_3453	2	STRG.11207.2,blat.proc3825152.chain_3454,blat.proc3825152.chain_3455	3
scaffold_21	alt_acceptor	10499244	10499245	-	asmbl_28053	none	STRG.24523.3	1	STRG.24523.1,STRG.24523.2,blat.proc3825160.chain_1734	3
scaffold_20	ends_in_intron	10516296	10516296	-	asmbl_26109	none	Trinity_GG_13142_c0_g1_i4,blat.proc3825160.chain_650	2	STRG.23593.1,STRG.23593.2,blat.proc3825160.chain_651,blat.proc3825160.chain_652	4
scaffold_5	spliced_intron	12842443	12842549	+	asmbl_45824,asmbl_45825,asmbl_45828	none	STRG.6517.1,STRG.6517.2,Trinity_GG_20807_c0_g1_i1,blat.proc3825166.chain_2619,blat.proc3825166.chain_2620	5	STRG.6517.3,STRG.6517.4,Trinity_GG_20807_c0_g1_i2,blat.proc3825166.chain_2621	4
scaffold_22	retained_intron	7891905	7892011	-	asmbl_29435,asmbl_29436	none	STRG.25146.2,Trinity_GG_14058_c0_g1_i1,blat.proc3825160.chain_2306,blat.proc3825160.chain_2307	4	STRG.25146.1,blat.proc3825160.chain_2308	2
scaffold_5	ends_in_intron	8539227	8539227	-	asmbl_44219	none	blat.proc3825150.chain_2422	1	STRG.6198.1,STRG.6198.3,STRG.6198.4,STRG.6198.5,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419,blat.proc3825150.chain_2421,blat.proc3825150.chain_2423	8
scaffold_9	spliced_intron	17658989	17659123	-	asmbl_55668	none	STRG.11848.3,Trinity_GG_6559_c0_g1_i1,blat.proc3825154.chain_338	3	STRG.11848.1,STRG.11848.2,Trinity_GG_6559_c0_g1_i3,Trinity_GG_6559_c0_g1_i4,blat.proc3825154.chain_337,blat.proc3825154.chain_339	6
scaffold_6	spliced_intron	8581465	8581566	+	asmbl_47156	none	STRG.7738.4	1	STRG.7738.2,blat.proc3825168.chain_176	2
scaffold_28	retained_intron	3175623	3175744	-	asmbl_38136	none	blat.proc3825162.chain_2694	1	STRG.29532.1,blat.proc3825162.chain_2695	2
scaffold_26	spliced_intron	9426206	9426291	-	asmbl_35780	none	STRG.28491.1	1	Trinity_GG_15933_c0_g1_i1	1
scaffold_15	retained_intron	13324142	13324642	+	asmbl_15631,asmbl_15633,asmbl_15636	none	Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3392	4	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3383,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389,blat.proc3825172.chain_3390	10
scaffold_25	alt_acceptor	6297787	6297788	-	asmbl_34343,asmbl_34345	none	STRG.27514.1,blat.proc3825162.chain_902,blat.proc3825162.chain_904	3	blat.proc3825162.chain_903	1
scaffold_1	spliced_intron	12683507	12683640	+	asmbl_2248	none	STRG.892.2	1	blat.proc3825164.chain_1037	1
scaffold_1	ends_in_intron	18486656	18486656	-	asmbl_1108,asmbl_1109,asmbl_1117	none	STRG.1298.6,STRG.1298.7,STRG.1298.8,blat.proc3825148.chain_1318,blat.proc3825148.chain_1319	5	STRG.1298.2,STRG.1298.3,STRG.1298.4,blat.proc3825148.chain_1320,blat.proc3825148.chain_1321,blat.proc3825148.chain_1322	6
scaffold_13	alternate_exon	1336063	1336111	+	asmbl_10562	none	STRG.15506.2,Trinity_GG_25848_c0_g1_i1,blat.proc3825172.chain_277	3	STRG.15506.1,blat.proc3825172.chain_279	2
scaffold_16	retained_intron	8088050	8088183	-	asmbl_17228	none	Trinity_GG_10909_c0_g1_i3,blat.proc3825158.chain_572	2	STRG.19454.1,blat.proc3825158.chain_573,blat.proc3825158.chain_574	3
scaffold_9	spliced_intron	11777566	11777749	+	asmbl_54379	none	STRG.11489.1	1	Trinity_GG_23725_c0_g1_i1,blat.proc3825170.chain_312	2
scaffold_1	alternate_exon	3679503	3680315	+	asmbl_1628	none	blat.proc3825164.chain_369	1	STRG.242.3	1
scaffold_20	alt_donor	11930394	11930395	+	asmbl_27104,asmbl_27106	none	STRG.23696.1,blat.proc3825176.chain_836,blat.proc3825176.chain_838	3	STRG.23696.3,blat.proc3825176.chain_837	2
scaffold_17	skipped_exon	9531820	9532877	+	asmbl_19105,asmbl_19106	none	STRG.20578.3,Trinity_GG_28562_c0_g1_i2,blat.proc3825174.chain_1395	3	STRG.20578.1,STRG.20578.2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1403	6
scaffold_13	spliced_intron	16006876	16007020	-	asmbl_10258	none	STRG.16639.1	1	Trinity_GG_9305_c0_g1_i1,blat.proc3825156.chain_1451	2
scaffold_1	starts_in_intron	12463000	12463000	-	asmbl_721	none	STRG.867.4	1	STRG.867.1,STRG.867.2,STRG.867.3,STRG.867.5	4
scaffold_1	spliced_intron	6973087	6973289	+	asmbl_1868,asmbl_1869,asmbl_1870	none	STRG.490.1,blat.proc3825164.chain_645,blat.proc3825164.chain_646,blat.proc3825164.chain_647	4	blat.proc3825164.chain_648	1
scaffold_22	skipped_exon	6902811	6903282	-	asmbl_29344	none	STRG.25009.1	1	STRG.25009.2	1
scaffold_9	skipped_exon	8042858	8043401	-	asmbl_55117	none	STRG.11238.2,Trinity_GG_6230_c1_g1_i1,blat.proc3825152.chain_3485	3	STRG.11238.1,Trinity_GG_6230_c1_g1_i3,blat.proc3825152.chain_3486	3
scaffold_20	alt_donor	10382921	10382922	+	asmbl_26954,asmbl_26955	none	STRG.23583.1,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_670,blat.proc3825176.chain_671	5	STRG.23583.2,STRG.23583.3,STRG.23583.4,blat.proc3825176.chain_672	4
scaffold_14	spliced_intron	8405603	8405746	-	asmbl_13308,asmbl_13309	none	STRG.17278.2,STRG.17278.4	2	STRG.17278.1,STRG.17278.3,blat.proc3825156.chain_2032	3
scaffold_8	starts_in_intron	23524	23524	-	asmbl_51683	none	blat.proc3825152.chain_2051	1	STRG.9705.2	1
scaffold_25	spliced_intron	8705312	8707289	+	asmbl_33756,asmbl_33759	none	STRG.27702.3,blat.proc3825178.chain_762	2	STRG.27702.2,blat.proc3825178.chain_766,blat.proc3825178.chain_770	3
scaffold_16	ends_in_intron	11953671	11953671	+	asmbl_16620	none	Trinity_GG_28067_c0_g1_i1,blat.proc3825174.chain_556	2	STRG.19723.1,STRG.19723.3,Trinity_GG_28067_c0_g1_i3,blat.proc3825174.chain_557	4
scaffold_3	retained_intron	17145299	17145473	+	asmbl_40655,asmbl_40657	none	STRG.3958.2,STRG.3958.4,Trinity_GG_19534_c0_g2_i1	3	STRG.3958.3,blat.proc3825166.chain_458	2
scaffold_1	starts_in_intron	6980078	6980078	+	asmbl_1874	none	Trinity_GG_17635_c0_g1_i2,blat.proc3825164.chain_651	2	STRG.501.1,STRG.501.2,blat.proc3825164.chain_653	3
scaffold_6	alt_acceptor	13735268	13735269	+	asmbl_47532,asmbl_47533	none	STRG.8126.1,STRG.8126.2,blat.proc3825168.chain_511,blat.proc3825168.chain_512	4	STRG.8126.3	1
scaffold_3	alt_acceptor	16186884	16186885	+	asmbl_40612	none	STRG.3901.2	1	STRG.3901.1,blat.proc3825166.chain_363	2
scaffold_2	starts_in_intron	182977	182977	+	asmbl_24087	none	blat.proc3825164.chain_1664	1	STRG.1512.1,Trinity_GG_18187_c0_g1_i2,blat.proc3825164.chain_1665,blat.proc3825164.chain_1666	4
scaffold_19	alternate_exon	13088619	13088734	-	asmbl_22594	none	STRG.22626.2	1	STRG.22626.1,blat.proc3825158.chain_3446	2
scaffold_1	alt_acceptor	20348277	20348278	+	asmbl_2621	none	STRG.1396.5	1	STRG.1396.1	1
scaffold_4	alt_donor	19539878	19539879	-	asmbl_43449	none	STRG.5541.3	1	blat.proc3825150.chain_1720	1
scaffold_4	starts_in_intron	13850918	13850918	+	asmbl_41830	none	blat.proc3825166.chain_1437	1	STRG.5006.1,blat.proc3825166.chain_1438	2
scaffold_26	retained_intron	5945016	5945154	-	asmbl_35651	none	STRG.28306.1,Trinity_GG_15823_c1_g1_i2,blat.proc3825162.chain_1510	3	STRG.28306.3	1
scaffold_10	alt_donor	6413515	6413516	-	asmbl_4453	none	blat.proc3825154.chain_1025	1	STRG.12469.1	1
scaffold_25	alt_donor	3612860	3612861	-	asmbl_34141,asmbl_34143	none	STRG.27305.1,blat.proc3825162.chain_671,blat.proc3825162.chain_672	3	STRG.27305.2	1
scaffold_22	skipped_exon	214832	216306	+	asmbl_29818	none	STRG.24676.5	1	STRG.24676.1,STRG.24676.2,blat.proc3825176.chain_1807,blat.proc3825176.chain_1808	4
scaffold_4	alt_acceptor	17122452	17122453	-	asmbl_43252,asmbl_43253	none	STRG.5310.2,STRG.5310.3,Trinity_GG_2967_c0_g1_i1,Trinity_GG_2967_c0_g1_i2	4	STRG.5310.1,STRG.5310.4	2
scaffold_6	retained_intron	5265077	5265171	+	asmbl_46937	none	Trinity_GG_21420_c0_g1_i6,blat.proc3825166.chain_3699	2	STRG.7498.2,blat.proc3825166.chain_3697	2
scaffold_2	alternate_exon	798691	801490	+	asmbl_24108	none	STRG.1557.1	1	STRG.1557.2	1
scaffold_5	ends_in_intron	9095569	9095569	+	asmbl_45609	none	Trinity_GG_20729_c0_g1_i1,blat.proc3825166.chain_2469	2	STRG.6249.1,Trinity_GG_20729_c0_g1_i2,blat.proc3825166.chain_2468	3
scaffold_27	retained_intron	315477	315621	-	asmbl_36657,asmbl_36658,asmbl_36659,asmbl_36660,asmbl_36662	none	STRG.28557.1,STRG.28557.2,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725,blat.proc3825162.chain_1728	5	STRG.28557.3,STRG.28557.4	2
scaffold_17	starts_in_intron	681063	681063	-	asmbl_17643,asmbl_17644	none	blat.proc3825158.chain_960,blat.proc3825158.chain_961	2	STRG.19921.1,STRG.19921.2,blat.proc3825158.chain_959,blat.proc3825158.chain_962	4
scaffold_6	skipped_exon	16620658	16622847	-	asmbl_49149	none	STRG.8392.3,blat.proc3825152.chain_834	2	STRG.8392.1,blat.proc3825152.chain_835	2
scaffold_2	spliced_intron	883173	884738	+	asmbl_24123,asmbl_24124	none	blat.proc3825164.chain_1623,blat.proc3825164.chain_1624	2	STRG.1564.2	1
scaffold_11	ends_in_intron	187910	187910	+	asmbl_5273	none	STRG.13248.1,blat.proc3825170.chain_1807	2	STRG.13248.2	1
scaffold_13	alt_donor	3699693	3699694	+	asmbl_10724	none	STRG.15685.3	1	STRG.15685.1,STRG.15685.2,Trinity_GG_25876_c0_g1_i1,blat.proc3825172.chain_336	4
scaffold_1	alt_donor	13929442	13929443	-	asmbl_864	none	STRG.1001.2	1	STRG.1001.1	1
scaffold_5	spliced_intron	8776863	8776953	-	asmbl_44241	none	STRG.6218.1,blat.proc3825150.chain_2430	2	Trinity_GG_3504_c0_g1_i1,blat.proc3825150.chain_2429	2
scaffold_9	alt_donor	4953282	4953283	-	asmbl_54982	none	STRG.11071.1,blat.proc3825152.chain_3309	2	STRG.11071.3	1
scaffold_6	retained_exon	18210869	18210989	-	asmbl_49230	none	STRG.8496.1	1	STRG.8496.2	1
scaffold_3	alternate_exon	14578469	14578602	-	asmbl_39397	none	STRG.3797.2,blat.proc3825148.chain_3740	2	STRG.3797.3,blat.proc3825148.chain_3742	2
scaffold_15	skipped_exon	3916766	3918067	+	asmbl_15114	none	STRG.18146.1,Trinity_GG_27267_c1_g1_i1	2	STRG.18146.2	1
scaffold_7	alternate_exon	1510891	1511259	+	asmbl_49611	none	STRG.8645.1,Trinity_GG_22057_c0_g1_i1,blat.proc3825168.chain_1132	3	STRG.8645.2	1
scaffold_5	retained_intron	10970546	10970703	+	asmbl_45716	none	blat.proc3825166.chain_2592	1	STRG.6375.1,STRG.6375.2,blat.proc3825166.chain_2593,blat.proc3825166.chain_2594	4
scaffold_14	retained_intron	583521	583652	+	asmbl_11767,asmbl_11773	none	STRG.16740.1,STRG.16740.4,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	4	STRG.16740.2	1
scaffold_24	ends_in_intron	9063949	9063949	+	asmbl_32488	none	blat.proc3825178.chain_137	1	STRG.26933.1,STRG.26933.2,STRG.26933.3,blat.proc3825178.chain_139	4
scaffold_1	spliced_intron	12334369	12335043	-	asmbl_711,asmbl_712,asmbl_713	none	blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839	3	Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_837	2
scaffold_25	starts_in_intron	4318351	4318351	+	asmbl_33486,asmbl_33488,asmbl_33490	none	STRG.27360.2,STRG.27360.3,blat.proc3825178.chain_467,blat.proc3825178.chain_469	4	STRG.27360.1,Trinity_GG_32398_c0_g1_i2,blat.proc3825178.chain_468	3
scaffold_9	retained_intron	2400442	2400475	-	asmbl_54870	none	blat.proc3825152.chain_3098	1	STRG.10884.1	1
scaffold_24	spliced_intron	7173191	7173356	-	asmbl_33015,asmbl_33016,asmbl_33017	none	STRG.26767.1,STRG.26767.2,blat.proc3825162.chain_74	3	blat.proc3825162.chain_76	1
scaffold_2	spliced_intron	10640331	10640648	-	asmbl_23428,asmbl_23430	none	STRG.2224.3,blat.proc3825148.chain_2263	2	STRG.2224.1,blat.proc3825148.chain_2260,blat.proc3825148.chain_2261,blat.proc3825148.chain_2262	4
scaffold_23	ends_in_intron	2209324	2209324	-	asmbl_30709	none	Trinity_GG_14381_c2_g1_i1,blat.proc3825160.chain_2880	2	STRG.25698.1,STRG.25698.2,STRG.25698.3,STRG.25698.5,STRG.25698.6	5
scaffold_7	alt_acceptor	3955085	3955086	-	asmbl_50830,asmbl_50836,asmbl_50837,asmbl_50838	none	STRG.8794.2,blat.proc3825152.chain_1231,blat.proc3825152.chain_1232,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235	5	STRG.8794.1,blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1228,blat.proc3825152.chain_1230,blat.proc3825152.chain_1236	6
scaffold_22	ends_in_intron	8300024	8300024	+	asmbl_30272	none	blat.proc3825176.chain_2311	1	STRG.25185.1	1
scaffold_24	starts_in_intron	5773338	5773338	+	asmbl_32227	none	blat.proc3825176.chain_3586	1	STRG.26642.1,blat.proc3825176.chain_3585	2
scaffold_1	ends_in_intron	45929	45929	-	asmbl_6	none	blat.proc3825148.chain_60	1	STRG.11.1,STRG.11.3,blat.proc3825148.chain_62,blat.proc3825148.chain_63,blat.proc3825148.chain_64	5
scaffold_14	alt_acceptor	15468153	15468154	+	asmbl_12598	none	STRG.17780.4	1	STRG.17780.2	1
scaffold_1	alt_donor	13639028	13639029	-	asmbl_838	none	STRG.982.2	1	STRG.982.1,blat.proc3825148.chain_955	2
scaffold_4	spliced_intron	12380946	12380988	-	asmbl_42911	none	STRG.4873.2	1	STRG.4873.1,Trinity_GG_2716_c0_g1_i2,blat.proc3825150.chain_1058,blat.proc3825150.chain_1059	4
scaffold_5	retained_intron	19374068	19374221	-	asmbl_44907	none	STRG.7039.5,blat.proc3825150.chain_3150	2	STRG.7039.1,STRG.7039.4,Trinity_GG_3919_c0_g1_i1,blat.proc3825150.chain_3148	4
scaffold_20	alternate_exon	427704	427942	+	asmbl_26350	none	STRG.22745.5,blat.proc3825174.chain_3744	2	STRG.22745.1	1
scaffold_8	alternate_exon	9819403	9819499	+	asmbl_53109	none	STRG.10229.3,Trinity_GG_22998_c0_g2_i3,blat.proc3825168.chain_2787	3	STRG.10229.2,blat.proc3825168.chain_2785	2
scaffold_21	spliced_intron	2162273	2162399	-	asmbl_27434	none	STRG.23841.1,blat.proc3825160.chain_907	2	blat.proc3825160.chain_908	1
scaffold_15	alt_acceptor	15355425	15355426	+	asmbl_15760	none	blat.proc3825172.chain_3563	1	STRG.18922.2,blat.proc3825172.chain_3562	2
scaffold_6	retained_intron	14179224	14179390	-	asmbl_48993	none	blat.proc3825152.chain_563	1	STRG.8181.1,blat.proc3825152.chain_562	2
scaffold_17	spliced_intron	2684608	2684736	+	asmbl_18679,asmbl_18680,asmbl_18682,asmbl_18683	none	STRG.20069.1,STRG.20069.2,STRG.20069.3,blat.proc3825174.chain_848,blat.proc3825174.chain_849,blat.proc3825174.chain_851	6	blat.proc3825174.chain_852	1
scaffold_4	starts_in_intron	5244389	5244389	-	asmbl_42583	none	blat.proc3825150.chain_598	1	STRG.4419.1,blat.proc3825150.chain_599	2
scaffold_21	spliced_intron	8008219	8008373	+	asmbl_28775,asmbl_28776,asmbl_28780,asmbl_28781	none	STRG.24337.2,STRG.24337.3,blat.proc3825176.chain_1553,blat.proc3825176.chain_1554,blat.proc3825176.chain_1555,blat.proc3825176.chain_1557	6	Trinity_GG_30800_c1_g1_i5,Trinity_GG_30800_c1_g1_i6,blat.proc3825176.chain_1556,blat.proc3825176.chain_1558	4
scaffold_8	ends_in_intron	3327181	3327181	+	asmbl_52754	none	Trinity_GG_22780_c0_g1_i1,blat.proc3825168.chain_2364	2	STRG.9835.1,blat.proc3825168.chain_2365	2
scaffold_5	ends_in_intron	15315843	15315843	-	asmbl_44663	none	Trinity_GG_3778_c0_g1_i2,blat.proc3825150.chain_2915	2	STRG.6724.1,blat.proc3825150.chain_2916	2
scaffold_8	alt_acceptor	4079078	4079079	+	asmbl_52810	none	blat.proc3825168.chain_2485	1	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2486	3
scaffold_6	retained_intron	7169018	7171242	+	asmbl_47050,asmbl_47053,asmbl_47055	none	STRG.7628.2,STRG.7628.4,Trinity_GG_21499_c0_g1_i2,blat.proc3825168.chain_81	4	STRG.7628.1	1
scaffold_16	alternate_exon	8638543	8641078	+	asmbl_16429,asmbl_16430	none	STRG.19492.1,STRG.19492.2,Trinity_GG_27966_c0_g1_i3,blat.proc3825174.chain_366,blat.proc3825174.chain_368	5	STRG.19492.4	1
scaffold_16	alternate_exon	14542466	14546279	-	asmbl_17459,asmbl_17460	none	blat.proc3825158.chain_900,blat.proc3825158.chain_901,blat.proc3825158.chain_902	3	STRG.19850.1	1
scaffold_7	alternate_exon	18394634	18394936	-	asmbl_51475	none	Trinity_GG_5439_c0_g1_i1,blat.proc3825152.chain_2012	2	Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2014,blat.proc3825152.chain_2017	4
scaffold_1	starts_in_intron	6903515	6903515	-	asmbl_403	none	Trinity_GG_241_c0_g1_i4	1	STRG.487.1,blat.proc3825148.chain_442,blat.proc3825148.chain_444	3
scaffold_14	alt_acceptor	15116263	15116264	+	asmbl_12563	none	blat.proc3825172.chain_2454	1	Trinity_GG_27062_c0_g1_i4,blat.proc3825172.chain_2453	2
scaffold_14	retained_intron	15565823	15565849	+	asmbl_12622,asmbl_12623,asmbl_12624	none	STRG.17796.1,STRG.17796.2,STRG.17796.3	3	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	3
scaffold_6	ends_in_intron	10389229	10389229	-	asmbl_48697	none	blat.proc3825152.chain_257	1	STRG.7875.1,blat.proc3825152.chain_256	2
scaffold_24	alt_acceptor	9088045	9088046	+	asmbl_32501	none	STRG.26951.2	1	STRG.26951.1,STRG.26951.3,STRG.26951.4,blat.proc3825178.chain_158,blat.proc3825178.chain_160,blat.proc3825178.chain_161,blat.proc3825178.chain_162	7
scaffold_22	alt_acceptor	224610	224611	-	asmbl_29078	none	STRG.24683.3	1	STRG.24683.5	1
scaffold_11	skipped_exon	2776469	2778507	+	asmbl_5379	none	STRG.13405.1,blat.proc3825170.chain_1944	2	STRG.13405.2,blat.proc3825170.chain_1943	2
scaffold_18	alternate_exon	9635958	9636617	-	asmbl_20063	none	STRG.21576.1,blat.proc3825158.chain_2478	2	STRG.21576.2,blat.proc3825158.chain_2481	2
scaffold_12	alt_acceptor	10605624	10605625	+	asmbl_7945	none	STRG.15036.1,blat.proc3825170.chain_3579	2	STRG.15036.4	1
scaffold_6	spliced_intron	12999352	12999538	-	asmbl_48863,asmbl_48864,asmbl_48868	none	STRG.8068.5,blat.proc3825152.chain_491,blat.proc3825152.chain_496	3	STRG.8068.6,blat.proc3825152.chain_493	2
scaffold_10	ends_in_intron	4128270	4128270	-	asmbl_4263	none	Trinity_GG_6845_c0_g2_i1,blat.proc3825154.chain_831	2	STRG.12250.1,STRG.12250.2,STRG.12250.3	3
scaffold_22	spliced_intron	4239535	4239758	-	asmbl_29213,asmbl_29220	none	STRG.24845.3,blat.proc3825160.chain_2066	2	STRG.24845.1,blat.proc3825160.chain_2067,blat.proc3825160.chain_2068	3
scaffold_17	starts_in_intron	12094253	12094253	-	asmbl_18316	none	blat.proc3825158.chain_1767	1	STRG.20739.1,blat.proc3825158.chain_1766	2
scaffold_10	spliced_intron	6071958	6072084	-	asmbl_4422,asmbl_4423,asmbl_4425,asmbl_4426,asmbl_4427,asmbl_4429,asmbl_4431,asmbl_4432	none	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1028,blat.proc3825154.chain_1029,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033,blat.proc3825154.chain_1034	10	Trinity_GG_6960_c0_g1_i3,blat.proc3825154.chain_1030,blat.proc3825154.chain_1031	3
scaffold_7	alt_acceptor	688489	688490	+	asmbl_49557	none	STRG.8604.3	1	STRG.8604.1,STRG.8604.4,blat.proc3825168.chain_1104	3
scaffold_6	retained_intron	11456049	11456165	-	asmbl_48752	none	STRG.7935.1,blat.proc3825152.chain_346	2	STRG.7935.2,blat.proc3825152.chain_345	2
scaffold_6	retained_intron	17186531	17186619	-	asmbl_49182	none	Trinity_GG_4809_c0_g1_i3,blat.proc3825152.chain_869	2	STRG.8430.1,STRG.8430.2,Trinity_GG_4809_c0_g1_i1,Trinity_GG_4809_c0_g1_i2,blat.proc3825152.chain_868,blat.proc3825152.chain_870	6
scaffold_5	ends_in_intron	12482841	12482841	+	asmbl_45800	none	Trinity_GG_20845_c0_g1_i1,blat.proc3825166.chain_2685	2	STRG.6485.1	1
scaffold_14	alternate_exon	14148818	14150151	+	asmbl_12525	none	STRG.17687.1	1	STRG.17687.4	1
scaffold_9	alt_donor	17611451	17611452	-	asmbl_55661,asmbl_55662	none	STRG.11851.4,blat.proc3825154.chain_295	2	STRG.11851.1,STRG.11851.2,STRG.11851.3,blat.proc3825154.chain_294	4
scaffold_4	spliced_intron	5651119	5651635	-	asmbl_42621	none	STRG.4472.4,blat.proc3825150.chain_665	2	STRG.4472.2,blat.proc3825150.chain_658,blat.proc3825150.chain_668	3
scaffold_12	alt_donor	13403502	13403503	-	asmbl_8945,asmbl_8948	none	STRG.15219.5,blat.proc3825156.chain_12	2	Trinity_GG_8526_c0_g1_i2,blat.proc3825156.chain_11	2
scaffold_7	alternate_exon	7191399	7191643	+	asmbl_49904	none	STRG.8983.1,blat.proc3825168.chain_1476	2	STRG.8983.2,blat.proc3825168.chain_1477	2
scaffold_7	ends_in_intron	700033	700033	-	asmbl_50687	none	blat.proc3825152.chain_1037	1	STRG.8606.2	1
scaffold_2	retained_intron	9295733	9295827	+	asmbl_24679	none	STRG.2170.2	1	STRG.2170.1,blat.proc3825164.chain_2358	2
scaffold_14	alt_acceptor	2840988	2840989	+	asmbl_11887	none	STRG.16881.1,Trinity_GG_26593_c0_g1_i1,blat.proc3825172.chain_1648	3	STRG.16881.2,Trinity_GG_26593_c0_g1_i2,blat.proc3825172.chain_1649	3
scaffold_8	alt_donor	17494980	17494981	+	asmbl_53483,asmbl_53488,asmbl_53489,asmbl_53490	none	STRG.10682.1,STRG.10682.4,blat.proc3825168.chain_3151,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	5	STRG.10682.3,blat.proc3825168.chain_3150,blat.proc3825168.chain_3152	3
scaffold_26	alt_acceptor	4819809	4819810	+	asmbl_34928	none	blat.proc3825178.chain_1219	1	STRG.28202.1,STRG.28202.2,blat.proc3825178.chain_1220,blat.proc3825178.chain_1221,blat.proc3825178.chain_1222	5
scaffold_6	alt_donor	13734531	13734532	+	asmbl_47533,asmbl_47534	none	STRG.8126.2,STRG.8126.3,blat.proc3825168.chain_512	3	STRG.8126.1,blat.proc3825168.chain_511	2
scaffold_9	alt_acceptor	1664412	1664413	-	asmbl_54825	none	STRG.10862.5	1	STRG.10862.7	1
scaffold_3	ends_in_intron	1532178	1532178	-	asmbl_38715	none	Trinity_GG_1580_c1_g1_i1,blat.proc3825148.chain_2809	2	STRG.2979.1,blat.proc3825148.chain_2810	2
scaffold_3	alt_acceptor	5951042	5951043	-	asmbl_38878,asmbl_38883	none	STRG.3259.4,STRG.3259.5,blat.proc3825148.chain_3162	3	blat.proc3825148.chain_3161	1
scaffold_2	spliced_intron	10635940	10636060	-	asmbl_23426,asmbl_23428,asmbl_23429,asmbl_23430	none	STRG.2224.1,STRG.2224.3,blat.proc3825148.chain_2260,blat.proc3825148.chain_2262,blat.proc3825148.chain_2263	5	STRG.2224.2,blat.proc3825148.chain_2261	2
scaffold_8	spliced_intron	8970436	8970848	-	asmbl_51983,asmbl_51986	none	STRG.10148.1,blat.proc3825152.chain_2424,blat.proc3825152.chain_2425	3	Trinity_GG_5668_c0_g2_i1,blat.proc3825152.chain_2426	2
scaffold_3	alternate_exon	10628698	10629347	+	asmbl_40287	none	blat.proc3825164.chain_3683	1	STRG.3513.1,STRG.3513.7,blat.proc3825164.chain_3684	3
scaffold_2	alternate_exon	19279671	19279914	-	asmbl_23858	none	STRG.2794.1	1	STRG.2794.2,blat.proc3825148.chain_2742	2
scaffold_10	starts_in_intron	930169	930169	+	asmbl_2887	none	Trinity_GG_23959_c0_g1_i1,blat.proc3825170.chain_702	2	STRG.11970.1,Trinity_GG_23959_c0_g1_i3,blat.proc3825170.chain_703	3
scaffold_3	alternate_exon	3245921	3246435	+	asmbl_39943	none	STRG.3072.3	1	STRG.3072.2,STRG.3072.4	2
scaffold_1517	alternate_exon	673	725	-	asmbl_15962	none	STRG.30614.2	1	STRG.30614.1,blat.proc3825162.chain_3674	2
scaffold_2	spliced_intron	13961990	13962517	-	asmbl_23550	none	STRG.2386.1,blat.proc3825148.chain_2380	2	STRG.2386.2,blat.proc3825148.chain_2381	2
scaffold_8	alt_acceptor	11854226	11854227	+	asmbl_53279,asmbl_53288	none	STRG.10390.4,STRG.10390.5	2	STRG.10390.2	1
scaffold_12	starts_in_intron	15031441	15031441	-	asmbl_9040	none	blat.proc3825154.chain_3742	1	STRG.15303.1,blat.proc3825154.chain_3741	2
scaffold_4	spliced_intron	17115130	17115304	+	asmbl_42036	none	STRG.5308.4	1	Trinity_GG_20255_c0_g1_i5	1
scaffold_6	alt_acceptor	12621344	12621345	-	asmbl_48834	none	Trinity_GG_4555_c0_g1_i2,blat.proc3825152.chain_410	2	STRG.8019.1,Trinity_GG_4555_c0_g1_i3,blat.proc3825152.chain_408	3
scaffold_19	starts_in_intron	12008066	12008066	-	asmbl_22441	none	Trinity_GG_12527_c0_g1_i2,blat.proc3825158.chain_3281	2	STRG.22522.1,Trinity_GG_12527_c0_g1_i4,blat.proc3825158.chain_3280	3
scaffold_18	alt_acceptor	9167892	9167893	+	asmbl_20881	none	STRG.21559.2	1	STRG.21559.1,STRG.21559.3,Trinity_GG_29198_c0_g1_i2,blat.proc3825174.chain_2557	4
scaffold_9	spliced_intron	17851315	17852001	+	asmbl_54655,asmbl_54657	none	STRG.11873.2,Trinity_GG_23881_c0_g1_i5,blat.proc3825170.chain_570	3	STRG.11873.3	1
scaffold_24	retained_intron	5949822	5950116	+	asmbl_32253,asmbl_32260,asmbl_32264,asmbl_32273	none	STRG.26675.2,Trinity_GG_32084_c0_g1_i11,blat.proc3825176.chain_3672,blat.proc3825176.chain_3673,blat.proc3825176.chain_3674,blat.proc3825176.chain_3677	6	blat.proc3825176.chain_3679	1
scaffold_17	spliced_intron	1054915	1055189	-	asmbl_17671	none	STRG.19948.3	1	STRG.19948.4,blat.proc3825158.chain_932	2
scaffold_9	starts_in_intron	4694	4694	-	asmbl_54790	none	Trinity_GG_5992_c0_g1_i1,blat.proc3825152.chain_3058	2	blat.proc3825152.chain_3057	1
scaffold_14	starts_in_intron	15830899	15830899	-	asmbl_13756	none	Trinity_GG_10015_c0_g1_i2	1	STRG.17828.1,STRG.17828.2,blat.proc3825156.chain_2636	3
scaffold_10	retained_intron	975363	975513	-	asmbl_4021	none	Trinity_GG_6637_c0_g1_i4,blat.proc3825154.chain_472	2	STRG.11979.1,Trinity_GG_6637_c0_g1_i5,Trinity_GG_6637_c0_g1_i6,Trinity_GG_6637_c0_g1_i7,Trinity_GG_6637_c0_g1_i9,blat.proc3825154.chain_471	6
scaffold_24	starts_in_intron	9063038	9063038	+	asmbl_32488	none	blat.proc3825178.chain_137	1	STRG.26933.1,STRG.26933.2,blat.proc3825178.chain_139	3
scaffold_18	starts_in_intron	5589683	5589683	+	asmbl_20592	none	blat.proc3825174.chain_2273	1	STRG.21318.1,STRG.21318.2,blat.proc3825174.chain_2272,blat.proc3825174.chain_2274,blat.proc3825174.chain_2275	5
scaffold_13	starts_in_intron	11586208	11586208	+	asmbl_11284,asmbl_11285	none	STRG.16316.6,blat.proc3825172.chain_1031	2	STRG.16316.3,STRG.16316.4,blat.proc3825172.chain_1028,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030,blat.proc3825172.chain_1036	6
scaffold_23	retained_intron	5849629	5849725	-	asmbl_30950	none	STRG.25956.2,blat.proc3825160.chain_3157	2	STRG.25956.1,Trinity_GG_14544_c0_g1_i1,blat.proc3825160.chain_3156	3
scaffold_20	alt_acceptor	417127	417128	+	asmbl_26346	none	STRG.22734.1,blat.proc3825174.chain_3714	2	STRG.22734.2	1
scaffold_17	alternate_exon	7130840	7130895	-	asmbl_18051	none	STRG.20385.1,Trinity_GG_11468_c0_g1_i1,blat.proc3825158.chain_1434	3	STRG.20385.2	1
scaffold_18	starts_in_intron	4134395	4134395	+	asmbl_20503	none	Trinity_GG_28954_c0_g1_i1,blat.proc3825174.chain_2097	2	STRG.21217.1	1
scaffold_5	alternate_exon	11626638	11628817	-	asmbl_44415,asmbl_44416,asmbl_44417,asmbl_44418	none	blat.proc3825150.chain_2638,blat.proc3825150.chain_2640,blat.proc3825150.chain_2642,blat.proc3825150.chain_2643	4	blat.proc3825150.chain_2639,blat.proc3825150.chain_2641	2
scaffold_12	starts_in_intron	9687872	9687872	-	asmbl_8690	none	blat.proc3825154.chain_3466	1	STRG.14946.1,STRG.14946.2,STRG.14946.3,STRG.14946.4,Trinity_GG_8342_c0_g1_i3,blat.proc3825154.chain_3465,blat.proc3825154.chain_3467	7
scaffold_4	spliced_intron	14115549	14115636	-	asmbl_43031	none	STRG.5032.1,blat.proc3825150.chain_1185	2	STRG.5032.2	1
scaffold_22	alt_donor	10320358	10320359	+	asmbl_30355	none	blat.proc3825176.chain_2362	1	STRG.25386.2,blat.proc3825176.chain_2361	2
scaffold_11	alternate_exon	7097925	7097956	+	asmbl_5659	none	STRG.13735.1,Trinity_GG_24873_c0_g1_i2,blat.proc3825170.chain_2262	3	STRG.13735.2,Trinity_GG_24873_c0_g1_i1,blat.proc3825170.chain_2263	3
scaffold_10	ends_in_intron	6018576	6018576	-	asmbl_4419	none	blat.proc3825154.chain_1007	1	STRG.12434.1,blat.proc3825154.chain_1008	2
scaffold_5	alt_acceptor	988901	988902	-	asmbl_43804,asmbl_43805	none	STRG.5650.1,blat.proc3825150.chain_1880,blat.proc3825150.chain_1881	3	STRG.5650.2,STRG.5650.3,STRG.5650.4	3
scaffold_2	skipped_exon	5200440	5201235	+	asmbl_24396	none	STRG.1940.1,Trinity_GG_18384_c0_g1_i3,blat.proc3825164.chain_2048	3	STRG.1940.3	1
scaffold_7	skipped_exon	17732017	17733017	+	asmbl_50494	none	blat.proc3825168.chain_2072	1	STRG.9619.1,blat.proc3825168.chain_2074	2
scaffold_6	retained_exon	9910384	9910437	+	asmbl_47248	none	STRG.7832.1	1	STRG.7832.2	1
scaffold_1	retained_exon	6831405	6831526	-	asmbl_384	none	STRG.474.1,blat.proc3825148.chain_465	2	STRG.474.2,blat.proc3825148.chain_463	2
scaffold_6	alternate_exon	12495507	12497977	+	asmbl_47416	none	blat.proc3825168.chain_493	1	STRG.8009.4,blat.proc3825168.chain_496	2
scaffold_3	alternate_exon	3237315	3245728	+	asmbl_39939	none	STRG.3072.2,blat.proc3825164.chain_3376	2	STRG.3072.5	1
scaffold_7	alt_donor	12083096	12083097	+	asmbl_50217,asmbl_50218	none	STRG.9316.1,STRG.9316.2,blat.proc3825168.chain_1845	3	STRG.9316.3	1
scaffold_19	ends_in_intron	6405020	6405020	+	asmbl_21409	none	Trinity_GG_29532_c0_g1_i2,blat.proc3825174.chain_3138	2	STRG.22168.1,Trinity_GG_29532_c0_g1_i3,blat.proc3825174.chain_3137	3
scaffold_13	starts_in_intron	7656254	7656254	+	asmbl_11063	none	Trinity_GG_26131_c0_g1_i2,blat.proc3825172.chain_822	2	STRG.16054.1,STRG.16054.2,blat.proc3825172.chain_820,blat.proc3825172.chain_821,blat.proc3825172.chain_824,blat.proc3825172.chain_825	6
scaffold_13	ends_in_intron	8301687	8301687	+	asmbl_11118	none	blat.proc3825172.chain_897	1	STRG.16123.1,STRG.16123.2,blat.proc3825172.chain_898	3
scaffold_4	ends_in_intron	8835584	8835584	+	asmbl_41585	none	blat.proc3825166.chain_1143	1	STRG.4697.1,blat.proc3825166.chain_1144	2
scaffold_4	alternate_exon	4415345	4417796	+	asmbl_41254,asmbl_41255	none	STRG.4349.1,STRG.4349.3,blat.proc3825166.chain_843,blat.proc3825166.chain_851	4	blat.proc3825166.chain_841,blat.proc3825166.chain_844	2
scaffold_15	spliced_intron	13325170	13325463	+	asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15634	none	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3389	6	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	8
scaffold_17	alt_donor	10069249	10069250	+	asmbl_19170	none	STRG.20631.2	1	STRG.20631.1,Trinity_GG_28612_c0_g1_i2,Trinity_GG_28612_c0_g1_i4,blat.proc3825174.chain_1514,blat.proc3825174.chain_1515	5
scaffold_4	alt_acceptor	18554612	18554613	-	asmbl_43383	none	STRG.5460.2	1	STRG.5460.1,blat.proc3825150.chain_1650,blat.proc3825150.chain_1651,blat.proc3825150.chain_1652	4
scaffold_10	retained_intron	6867580	6867786	-	asmbl_4508	none	blat.proc3825154.chain_1139	1	STRG.12511.1,blat.proc3825154.chain_1142,blat.proc3825154.chain_1144,blat.proc3825154.chain_1147	4
scaffold_5	alt_acceptor	12636882	12636883	+	asmbl_45805	none	STRG.6502.2	1	STRG.6502.1,blat.proc3825166.chain_2691	2
scaffold_5	retained_intron	12755181	12755356	-	asmbl_44483	none	STRG.6511.2,Trinity_GG_3632_c1_g1_i2,blat.proc3825150.chain_2651	3	STRG.6511.1,blat.proc3825150.chain_2652	2
scaffold_24	retained_intron	6223797	6223880	-	asmbl_32940,asmbl_32942,asmbl_32949,asmbl_32950	none	STRG.26685.3,STRG.26685.4,STRG.26685.5,STRG.26685.6,Trinity_GG_14882_c0_g1_i11,blat.proc3825160.chain_3731	6	STRG.26685.1,STRG.26685.2,blat.proc3825160.chain_3732,blat.proc3825160.chain_3737	4
scaffold_8	spliced_intron	16142261	16142410	-	asmbl_52364	none	STRG.10604.4,blat.proc3825152.chain_2833	2	blat.proc3825152.chain_2832	1
scaffold_2	ends_in_intron	3632256	3632256	+	asmbl_24290	none	Trinity_GG_18311_c0_g1_i6	1	STRG.1787.1,STRG.1787.2,blat.proc3825164.chain_1919	3
scaffold_1	alternate_exon	14607456	14607494	+	asmbl_2402	none	STRG.1061.2	1	STRG.1061.1	1
scaffold_2	starts_in_intron	1783416	1783416	-	asmbl_22871	none	STRG.1635.1	1	STRG.1635.2	1
scaffold_22	retained_exon	512491	512561	-	asmbl_29094	none	STRG.24702.5,Trinity_GG_13790_c0_g1_i5,blat.proc3825160.chain_1866	3	STRG.24702.1,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i12,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i15,Trinity_GG_13790_c0_g1_i9,blat.proc3825160.chain_1860,blat.proc3825160.chain_1861,blat.proc3825160.chain_1864,blat.proc3825160.chain_1865,blat.proc3825160.chain_1869	11
scaffold_10	retained_exon	7250740	7252303	-	asmbl_4532,asmbl_4534	none	STRG.12538.2,blat.proc3825154.chain_1072,blat.proc3825154.chain_1073	3	STRG.12538.1,blat.proc3825154.chain_1074,blat.proc3825154.chain_1075,blat.proc3825154.chain_1076	4
scaffold_16	alt_acceptor	5357611	5357612	-	asmbl_17088	none	STRG.19286.1	1	STRG.19286.2	1
scaffold_21	alternate_exon	1757835	1757862	-	asmbl_27423	none	blat.proc3825160.chain_962	1	STRG.23823.1,STRG.23823.2,blat.proc3825160.chain_961,blat.proc3825160.chain_963	4
scaffold_8	ends_in_intron	9881965	9881965	+	asmbl_53130	none	blat.proc3825168.chain_2803	1	STRG.10236.1,STRG.10236.2,blat.proc3825168.chain_2802,blat.proc3825168.chain_2804	4
scaffold_13	starts_in_intron	6048100	6048100	-	asmbl_9762	none	STRG.15915.2,blat.proc3825156.chain_786	2	STRG.15915.4,blat.proc3825156.chain_784	2
scaffold_25	alt_acceptor	7322411	7322412	-	asmbl_34396	none	STRG.27581.1	1	STRG.27581.2,STRG.27581.4	2
scaffold_10	spliced_intron	13471381	13471638	-	asmbl_4885,asmbl_4886,asmbl_4888,asmbl_4890	none	STRG.12943.2,STRG.12943.3,STRG.12943.4,blat.proc3825154.chain_1532,blat.proc3825154.chain_1533	5	STRG.12943.1,Trinity_GG_7233_c0_g2_i3,blat.proc3825154.chain_1534,blat.proc3825154.chain_1535	4
scaffold_18	skipped_exon	2055960	2058306	-	asmbl_19698	none	STRG.21095.1,blat.proc3825158.chain_2077	2	STRG.21095.2,blat.proc3825158.chain_2076	2
scaffold_8	retained_exon	6120972	6121052	+	asmbl_52938	none	STRG.10015.1,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	3	STRG.10015.2	1
scaffold_3	ends_in_intron	2872876	2872876	+	asmbl_39924	none	blat.proc3825164.chain_3284	1	STRG.3047.1,blat.proc3825164.chain_3287	2
scaffold_4	starts_in_intron	4688791	4688791	+	asmbl_41301,asmbl_41302	none	blat.proc3825166.chain_818,blat.proc3825166.chain_820	2	STRG.4379.1,blat.proc3825166.chain_813,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_819	5
scaffold_11	spliced_intron	8790350	8790437	-	asmbl_6876	none	STRG.13904.2	1	STRG.13904.3	1
scaffold_27	alt_acceptor	1044481	1044482	+	asmbl_35985	none	STRG.28605.2	1	STRG.28605.1	1
scaffold_1	alternate_exon	1451186	1451225	-	asmbl_72	none	STRG.89.1,blat.proc3825148.chain_6	2	STRG.89.2	1
scaffold_18	starts_in_intron	823737	823737	+	asmbl_20328	none	STRG.21008.3	1	STRG.21008.1,STRG.21008.2,blat.proc3825174.chain_1871,blat.proc3825174.chain_1872,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	6
scaffold_19	retained_intron	12423727	12423837	+	asmbl_21798	none	Trinity_GG_29795_c0_g1_i2,blat.proc3825174.chain_3593	2	Trinity_GG_29795_c0_g1_i1,blat.proc3825174.chain_3592	2
scaffold_2	alt_donor	3771210	3771211	+	asmbl_24313	none	blat.proc3825164.chain_1957	1	STRG.1810.1	1
scaffold_9	alt_donor	9853059	9853060	+	asmbl_54264	none	STRG.11357.1,blat.proc3825170.chain_207	2	STRG.11357.2	1
scaffold_24	alternate_exon	4319255	4319675	+	asmbl_32190,asmbl_32191	none	Trinity_GG_31987_c0_g1_i1,Trinity_GG_31987_c0_g1_i2,blat.proc3825176.chain_3494,blat.proc3825176.chain_3495	4	STRG.26600.1	1
scaffold_14	starts_in_intron	1591562	1591562	-	asmbl_12897	none	blat.proc3825156.chain_1563	1	STRG.16799.1,STRG.16799.2,STRG.16799.3,STRG.16799.4,blat.proc3825156.chain_1564,blat.proc3825156.chain_1565,blat.proc3825156.chain_1566	7
scaffold_10	alt_donor	3928826	3928827	-	asmbl_4241,asmbl_4246	none	STRG.12235.2,STRG.12235.5,blat.proc3825154.chain_800	3	STRG.12235.4,blat.proc3825154.chain_798	2
scaffold_17	starts_in_intron	10049359	10049359	+	asmbl_19162	none	Trinity_GG_28608_c0_g1_i4,blat.proc3825174.chain_1499	2	STRG.20618.1,STRG.20618.2,blat.proc3825174.chain_1496,blat.proc3825174.chain_1497	4
scaffold_3	alt_acceptor	13768960	13768961	+	asmbl_40459	none	STRG.3721.3,blat.proc3825166.chain_215	2	STRG.3721.1,blat.proc3825166.chain_214	2
scaffold_9	ends_in_intron	13313322	13313322	-	asmbl_55437	none	Trinity_GG_6365_c0_g1_i2,blat.proc3825154.chain_14	2	STRG.11632.1	1
scaffold_11	alt_donor	15654316	15654317	-	asmbl_7198,asmbl_7200,asmbl_7202,asmbl_7204	none	STRG.14308.1,blat.proc3825154.chain_2859,blat.proc3825154.chain_2860,blat.proc3825154.chain_2861,blat.proc3825154.chain_2868	5	STRG.14308.2,blat.proc3825154.chain_2863,blat.proc3825154.chain_2865,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867	5
scaffold_16	alt_acceptor	291473	291474	+	asmbl_16017	none	blat.proc3825172.chain_3689	1	STRG.19019.1,STRG.19019.2,STRG.19019.3,Trinity_GG_27744_c0_g1_i11,Trinity_GG_27744_c0_g1_i2,blat.proc3825172.chain_3687,blat.proc3825172.chain_3690,blat.proc3825172.chain_3691	8
scaffold_3	spliced_intron	8165106	8165645	-	asmbl_39010	none	STRG.3440.1	1	blat.proc3825148.chain_3270	1
scaffold_8	retained_exon	9532747	9533463	+	asmbl_53083	none	STRG.10212.2,Trinity_GG_22988_c0_g1_i1,Trinity_GG_22988_c1_g1_i1,blat.proc3825168.chain_2763,blat.proc3825168.chain_2764	5	STRG.10212.1	1
scaffold_15	starts_in_intron	6103588	6103588	-	asmbl_14244	none	blat.proc3825156.chain_3143	1	STRG.18273.1,blat.proc3825156.chain_3140,blat.proc3825156.chain_3141	3
scaffold_12	alt_acceptor	7626482	7626483	-	asmbl_8612	none	STRG.14843.2	1	blat.proc3825154.chain_3291	1
scaffold_10	ends_in_intron	16532934	16532934	+	asmbl_3723	none	STRG.13128.3	1	STRG.13128.1,blat.proc3825170.chain_1651,blat.proc3825170.chain_1653	3
scaffold_4	retained_intron	4415761	4416396	+	asmbl_41250,asmbl_41256,asmbl_41257,asmbl_41259,asmbl_41261	none	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_847,blat.proc3825166.chain_852,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	6	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,Trinity_GG_19749_c0_g1_i21,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_842,blat.proc3825166.chain_843,blat.proc3825166.chain_845,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_851	15
scaffold_13	retained_intron	2569792	2570318	+	asmbl_10623	none	STRG.15563.2,Trinity_GG_25871_c0_g1_i4,Trinity_GG_25871_c1_g1_i1,blat.proc3825172.chain_326,blat.proc3825172.chain_328	5	STRG.15563.1,STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_323,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_327	9
scaffold_11	spliced_intron	10144217	10144522	-	asmbl_6983	none	STRG.14028.2	1	STRG.14028.1,Trinity_GG_7815_c0_g1_i1	2
scaffold_1	alt_donor	4233802	4233803	+	asmbl_1648,asmbl_1655	none	STRG.256.3,blat.proc3825164.chain_400	2	STRG.256.1,STRG.256.2,STRG.256.4,STRG.256.5,blat.proc3825164.chain_401,blat.proc3825164.chain_403,blat.proc3825164.chain_404	7
scaffold_5	skipped_exon	14262861	14263469	+	asmbl_45915	none	STRG.6638.2,blat.proc3825166.chain_2785	2	STRG.6638.1,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2792	6
scaffold_16	starts_in_intron	1880913	1880913	+	asmbl_16106,asmbl_16107	none	Trinity_GG_27792_c0_g1_i1,Trinity_GG_27792_c0_g1_i3,blat.proc3825174.chain_29,blat.proc3825174.chain_31	4	STRG.19108.1,STRG.19108.2	2
scaffold_28	alt_acceptor	4205173	4205174	+	asmbl_37518,asmbl_37519	none	STRG.29616.4,STRG.29616.5,blat.proc3825178.chain_2815	3	STRG.29616.1	1
scaffold_24	alt_donor	7637607	7637608	-	asmbl_33042	none	STRG.26805.1,blat.proc3825162.chain_169	2	STRG.26805.2	1
scaffold_21	ends_in_intron	5176198	5176198	-	asmbl_27622	none	Trinity_GG_13430_c1_g1_i1,blat.proc3825160.chain_1243	2	STRG.24060.1,blat.proc3825160.chain_1237,blat.proc3825160.chain_1238,blat.proc3825160.chain_1239,blat.proc3825160.chain_1241	5
scaffold_3	spliced_intron	18372738	18372846	-	asmbl_39619	none	STRG.4051.1	1	blat.proc3825150.chain_229	1
scaffold_4	alt_acceptor	5474405	5474406	+	asmbl_41353	none	STRG.4441.1,blat.proc3825166.chain_898	2	STRG.4441.2	1
scaffold_11	alt_acceptor	10981968	10981969	-	asmbl_7009	none	STRG.14062.2	1	STRG.14062.3	1
scaffold_5	ends_in_intron	17324153	17324153	+	asmbl_46166	none	Trinity_GG_21103_c0_g1_i4,blat.proc3825166.chain_3100	2	Trinity_GG_21103_c0_g1_i2,blat.proc3825166.chain_3101	2
scaffold_14	spliced_intron	15468065	15468154	+	asmbl_12598	none	STRG.17780.4	1	STRG.17780.1	1
scaffold_4	ends_in_intron	17117376	17117376	+	asmbl_42033	none	STRG.5308.3,blat.proc3825166.chain_1672	2	STRG.5308.1	1
scaffold_28	alt_donor	4693998	4693999	+	asmbl_37543	none	STRG.29641.2	1	STRG.29641.1,blat.proc3825178.chain_2839	2
scaffold_10	alt_donor	3283802	3283803	-	asmbl_4181	none	STRG.12151.1,blat.proc3825154.chain_668	2	STRG.12151.2	1
scaffold_4	alt_acceptor	13417150	13417151	+	asmbl_41790,asmbl_41791,asmbl_41792	none	STRG.4977.2,blat.proc3825166.chain_1334,blat.proc3825166.chain_1335	3	STRG.4977.1,STRG.4977.3,blat.proc3825166.chain_1336,blat.proc3825166.chain_1337	4
scaffold_22	alt_acceptor	4837713	4837714	+	asmbl_30043	none	STRG.24900.1,Trinity_GG_31075_c0_g1_i1,blat.proc3825176.chain_2011	3	STRG.24900.2	1
scaffold_28	alt_acceptor	2908038	2908039	-	asmbl_38103	none	STRG.29486.2	1	STRG.29486.1	1
scaffold_643	spliced_intron	1606	1628	-	asmbl_49488	none	STRG.30415.3	1	blat.proc3825162.chain_3524	1
scaffold_21	retained_intron	7422211	7422334	-	asmbl_27809	none	blat.proc3825160.chain_1445	1	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	5
scaffold_1	alternate_exon	20133630	20134859	-	asmbl_1170	none	STRG.1386.5,Trinity_GG_758_c0_g1_i1	2	STRG.1386.7	1
scaffold_13	alt_donor	2376098	2376099	-	asmbl_9458	none	STRG.15553.2,blat.proc3825156.chain_450	2	STRG.15553.1,STRG.15553.3,STRG.15553.4,blat.proc3825156.chain_448,blat.proc3825156.chain_449	5
scaffold_9	spliced_intron	10918975	10919509	+	asmbl_54307,asmbl_54308	none	STRG.11408.1,STRG.11408.2,blat.proc3825170.chain_168,blat.proc3825170.chain_171	4	blat.proc3825170.chain_169,blat.proc3825170.chain_170	2
scaffold_18	retained_exon	3915822	3915973	-	asmbl_19786	none	STRG.21203.3	1	blat.proc3825158.chain_2160	1
scaffold_10	retained_intron	1425641	1425720	+	asmbl_2933,asmbl_2934,asmbl_2936	none	STRG.12016.2,Trinity_GG_23995_c0_g1_i3,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_759,blat.proc3825170.chain_762,blat.proc3825170.chain_764	6	STRG.12016.3,Trinity_GG_23995_c0_g1_i4,blat.proc3825170.chain_761,blat.proc3825170.chain_765	4
scaffold_23	retained_intron	4316512	4316611	+	asmbl_31500	none	Trinity_GG_31566_c0_g1_i7,blat.proc3825176.chain_2775	2	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2780	4
scaffold_25	ends_in_intron	3120115	3120115	-	asmbl_34103	none	blat.proc3825162.chain_639	1	STRG.27250.1	1
scaffold_11	alt_acceptor	10978088	10978089	-	asmbl_7005	none	STRG.14063.2,blat.proc3825154.chain_2622	2	STRG.14063.1,blat.proc3825154.chain_2624	2
scaffold_7	skipped_exon	1235897	1237950	+	asmbl_49600	none	Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	2	STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072,blat.proc3825168.chain_1074,blat.proc3825168.chain_1079	9
scaffold_21	retained_exon	256174	256741	-	asmbl_27290	none	blat.proc3825160.chain_805	1	blat.proc3825160.chain_807	1
scaffold_28	spliced_intron	232029	232204	+	asmbl_37258	none	STRG.29253.2	1	blat.proc3825178.chain_2481	1
scaffold_9	ends_in_intron	6989140	6989140	+	asmbl_54118	none	blat.proc3825168.chain_3694	1	STRG.11214.1,blat.proc3825168.chain_3695	2
scaffold_21	spliced_intron	5598203	5598331	-	asmbl_27679,asmbl_27680	none	STRG.24095.1,STRG.24095.2,blat.proc3825160.chain_1255,blat.proc3825160.chain_1257	4	Trinity_GG_13440_c0_g1_i2,blat.proc3825160.chain_1256	2
scaffold_21	ends_in_intron	10286011	10286011	-	asmbl_28026	none	blat.proc3825160.chain_1689	1	STRG.24492.1,blat.proc3825160.chain_1690	2
scaffold_20	spliced_intron	8292117	8292345	+	asmbl_26757,asmbl_26758,asmbl_26759,asmbl_26760	none	STRG.23374.2,STRG.23374.3,STRG.23374.4,blat.proc3825176.chain_518,blat.proc3825176.chain_519	5	STRG.23374.1,Trinity_GG_30200_c0_g1_i3,blat.proc3825176.chain_517,blat.proc3825176.chain_520	4
scaffold_21	retained_intron	8008219	8008373	+	asmbl_28777	none	Trinity_GG_30800_c1_g1_i5,Trinity_GG_30800_c1_g1_i6,blat.proc3825176.chain_1556,blat.proc3825176.chain_1558	4	STRG.24337.2,STRG.24337.3,blat.proc3825176.chain_1553,blat.proc3825176.chain_1554,blat.proc3825176.chain_1555,blat.proc3825176.chain_1557	6
scaffold_3	retained_intron	7917839	7917894	-	asmbl_39001,asmbl_39002	none	blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	2	STRG.3377.3	1
scaffold_4	starts_in_intron	6941983	6941983	+	asmbl_41433,asmbl_41435	none	STRG.4536.2,STRG.4536.3,blat.proc3825166.chain_917	3	STRG.4536.1,blat.proc3825166.chain_914,blat.proc3825166.chain_915	3
scaffold_28	starts_in_intron	4209364	4209364	+	asmbl_37522	none	blat.proc3825178.chain_2813	1	STRG.29616.1,STRG.29616.4,STRG.29616.5,STRG.29616.6,blat.proc3825178.chain_2809,blat.proc3825178.chain_2815	6
scaffold_6	starts_in_intron	10865344	10865344	+	asmbl_47300	none	STRG.7900.2,blat.proc3825168.chain_362	2	STRG.7900.1,blat.proc3825168.chain_361	2
scaffold_18	alt_donor	2835065	2835066	+	asmbl_20425	none	STRG.21142.5,blat.proc3825174.chain_2048	2	STRG.21142.4,blat.proc3825174.chain_2046	2
scaffold_19	spliced_intron	7702234	7702855	+	asmbl_21488,asmbl_21489,asmbl_21492	none	STRG.22255.1,STRG.22255.2,STRG.22255.3,Trinity_GG_29606_c0_g2_i1,blat.proc3825174.chain_3256,blat.proc3825174.chain_3258	6	blat.proc3825174.chain_3257	1
scaffold_20	ends_in_intron	1951603	1951603	-	asmbl_25626	none	blat.proc3825160.chain_30	1	STRG.22935.1	1
scaffold_7	starts_in_intron	13951905	13951905	+	asmbl_50386,asmbl_50387	none	Trinity_GG_22583_c0_g1_i2,Trinity_GG_22583_c0_g1_i5,blat.proc3825168.chain_2008,blat.proc3825168.chain_2010	4	STRG.9492.1	1
scaffold_11	retained_exon	11937510	11937722	-	asmbl_7042,asmbl_7043	none	STRG.14177.2,STRG.14177.3	2	STRG.14177.4	1
scaffold_28	spliced_intron	5237564	5237680	-	asmbl_38267,asmbl_38268,asmbl_38272,asmbl_38273	none	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2781,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	6	blat.proc3825162.chain_2780,blat.proc3825162.chain_2786	2
scaffold_19	starts_in_intron	31535	31535	+	asmbl_21171	none	Trinity_GG_29379_c0_g1_i2	1	STRG.21819.1,Trinity_GG_29379_c0_g1_i1,Trinity_GG_29379_c0_g1_i3,blat.proc3825174.chain_2862,blat.proc3825174.chain_2863	5
scaffold_1	spliced_intron	4239169	4239798	+	asmbl_1647	none	STRG.256.1,blat.proc3825164.chain_404	2	blat.proc3825164.chain_402	1
scaffold_26	spliced_intron	5501908	5502171	+	asmbl_35008	none	STRG.28260.2,blat.proc3825178.chain_1345	2	STRG.28260.1,blat.proc3825178.chain_1343	2
scaffold_18	retained_intron	282012	282108	+	asmbl_20285	none	STRG.20984.3	1	STRG.20984.2	1
scaffold_27	alt_acceptor	1553743	1553744	+	asmbl_36027,asmbl_36029,asmbl_36030	none	STRG.28644.1,STRG.28644.2,STRG.28644.3,blat.proc3825178.chain_1762	4	STRG.28644.4	1
scaffold_12	retained_intron	3326235	3326361	-	asmbl_8354	none	STRG.14554.2,blat.proc3825154.chain_3023	2	STRG.14554.1,blat.proc3825154.chain_3022	2
scaffold_15	retained_exon	15321517	15321639	+	asmbl_15747	none	STRG.18917.2,Trinity_GG_27684_c0_g1_i1,blat.proc3825172.chain_3557	3	STRG.18917.1	1
scaffold_13	skipped_exon	8809211	8810964	-	asmbl_9984	none	blat.proc3825156.chain_1067	1	Trinity_GG_9086_c0_g1_i5,blat.proc3825156.chain_1065,blat.proc3825156.chain_1070,blat.proc3825156.chain_1073	4
scaffold_8	spliced_intron	6028690	6028824	+	asmbl_52924,asmbl_52926,asmbl_52929,asmbl_52930	none	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2614	4	blat.proc3825168.chain_2613,blat.proc3825168.chain_2615	2
scaffold_11	spliced_intron	9018786	9019232	-	asmbl_6902,asmbl_6904,asmbl_6905,asmbl_6906,asmbl_6907	none	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406,blat.proc3825154.chain_2407,blat.proc3825154.chain_2408	6	Trinity_GG_7749_c0_g1_i4,Trinity_GG_7749_c0_g1_i6,blat.proc3825154.chain_2409,blat.proc3825154.chain_2410,blat.proc3825154.chain_2411	5
scaffold_13	retained_intron	394206	394756	-	asmbl_9343,asmbl_9346,asmbl_9348	none	Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_353,blat.proc3825156.chain_359,blat.proc3825156.chain_366	6	STRG.15444.1,STRG.15444.3,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_352,blat.proc3825156.chain_355,blat.proc3825156.chain_364	9
scaffold_12	starts_in_intron	15761187	15761187	+	asmbl_8137	none	blat.proc3825172.chain_53	1	STRG.15368.2	1
scaffold_19	spliced_intron	11482922	11483072	-	asmbl_22404,asmbl_22409,asmbl_22410,asmbl_22414	none	STRG.22486.1,STRG.22486.2,blat.proc3825158.chain_3244,blat.proc3825158.chain_3245,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	6	Trinity_GG_12512_c0_g1_i1,blat.proc3825158.chain_3246	2
scaffold_8	ends_in_intron	6904041	6904041	+	asmbl_52970	none	blat.proc3825168.chain_2534	1	STRG.10051.1,STRG.10051.2,STRG.10051.3,blat.proc3825168.chain_2537	4
scaffold_7	starts_in_intron	13963188	13963188	-	asmbl_51332	none	Trinity_GG_5302_c0_g1_i1,blat.proc3825152.chain_1791	2	STRG.9496.1,Trinity_GG_5302_c0_g1_i2,blat.proc3825152.chain_1790	3
scaffold_14	spliced_intron	3244204	3244521	+	asmbl_11929,asmbl_11933	none	STRG.16923.1,blat.proc3825172.chain_1617,blat.proc3825172.chain_1622	3	STRG.16923.2,Trinity_GG_26577_c0_g1_i1,blat.proc3825172.chain_1620,blat.proc3825172.chain_1621	4
scaffold_1	retained_exon	13565843	13565951	-	asmbl_832	none	blat.proc3825148.chain_863	1	STRG.974.1	1
scaffold_25	retained_intron	4442011	4442378	+	asmbl_33495	none	STRG.27374.1,Trinity_GG_32407_c0_g1_i1,blat.proc3825178.chain_481	3	STRG.27374.3,STRG.27374.4,Trinity_GG_32407_c0_g1_i2,blat.proc3825178.chain_482	4
scaffold_10	alt_acceptor	6323733	6323734	-	asmbl_4447,asmbl_4449	none	STRG.12462.2,STRG.12462.3,blat.proc3825154.chain_997	3	STRG.12462.1,blat.proc3825154.chain_998	2
scaffold_13	retained_intron	16048875	16048994	+	asmbl_11548	none	STRG.16642.3	1	STRG.16642.2	1
scaffold_6	alternate_exon	8932323	8933429	+	asmbl_47183	none	STRG.7773.1,blat.proc3825168.chain_202	2	STRG.7773.2,STRG.7773.3,blat.proc3825168.chain_203	3
scaffold_2	spliced_intron	13754062	13754214	-	asmbl_23524,asmbl_23526	none	STRG.2373.1,blat.proc3825148.chain_2331,blat.proc3825148.chain_2332	3	blat.proc3825148.chain_2330	1
scaffold_5	spliced_intron	8792001	8792555	+	asmbl_45572,asmbl_45574,asmbl_45577	none	STRG.6219.1,Trinity_GG_20718_c0_g1_i5,blat.proc3825166.chain_2446,blat.proc3825166.chain_2447,blat.proc3825166.chain_2448	5	blat.proc3825166.chain_2450	1
scaffold_23	spliced_intron	10894395	10894488	+	asmbl_31889	none	blat.proc3825176.chain_3271	1	Trinity_GG_31842_c0_g1_i2,blat.proc3825176.chain_3270	2
scaffold_13	retained_intron	6950776	6951096	-	asmbl_9818	none	STRG.15984.1,Trinity_GG_8951_c0_g1_i5	2	STRG.15984.4	1
scaffold_10	retained_intron	5866632	5866731	-	asmbl_4403	none	STRG.12407.1,blat.proc3825154.chain_966	2	STRG.12407.2,Trinity_GG_6925_c0_g1_i1,blat.proc3825154.chain_967	3
scaffold_4	retained_intron	3528251	3528471	-	asmbl_42448	none	STRG.4289.1	1	STRG.4289.5	1
scaffold_15	retained_exon	1963609	1963689	+	asmbl_15042	none	STRG.17992.3	1	STRG.17992.1,STRG.17992.2	2
scaffold_21	retained_exon	256707	257152	-	asmbl_27290,asmbl_27292,asmbl_27293	none	blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	3	STRG.23725.4	1
scaffold_10	starts_in_intron	9554352	9554352	+	asmbl_3399	none	blat.proc3825170.chain_1284	1	STRG.12711.2,STRG.12711.3	2
scaffold_5	retained_intron	19351640	19352041	-	asmbl_44901	none	blat.proc3825150.chain_3157	1	STRG.7034.1,STRG.7034.2,blat.proc3825150.chain_3156	3
scaffold_12	alt_donor	9231563	9231564	-	asmbl_8665	none	STRG.14939.4	1	STRG.14939.1,STRG.14939.2,STRG.14939.3,Trinity_GG_8336_c0_g1_i18,blat.proc3825154.chain_3447,blat.proc3825154.chain_3448,blat.proc3825154.chain_3450,blat.proc3825154.chain_3457,blat.proc3825154.chain_3458	9
scaffold_20	alternate_exon	8167482	8167647	+	asmbl_26747	none	STRG.23366.1,Trinity_GG_30189_c0_g1_i1,blat.proc3825176.chain_502	3	STRG.23366.2	1
scaffold_1	alt_acceptor	4590127	4590128	-	asmbl_212	none	STRG.284.1,Trinity_GG_101_c0_g1_i1,blat.proc3825148.chain_171	3	STRG.284.2,STRG.284.3	2
scaffold_17	alternate_exon	8218364	8220292	+	asmbl_18947	none	STRG.20449.1,Trinity_GG_28483_c0_g2_i1,blat.proc3825174.chain_1248,blat.proc3825174.chain_1249	4	STRG.20449.3	1
scaffold_2	alt_acceptor	14480292	14480293	-	asmbl_23605	none	STRG.2448.1,blat.proc3825148.chain_2429	2	STRG.2448.2	1
scaffold_18	retained_exon	2056676	2056747	-	asmbl_19697	none	STRG.21095.2,blat.proc3825158.chain_2076	2	STRG.21095.1,blat.proc3825158.chain_2077	2
scaffold_26	alt_acceptor	9834903	9834904	-	asmbl_35791	none	STRG.28522.2,blat.proc3825162.chain_1630	2	STRG.28522.1,blat.proc3825162.chain_1631	2
scaffold_1	alt_acceptor	11096479	11096480	+	asmbl_2059	none	Trinity_GG_17769_c0_g1_i4	1	STRG.726.2	1
scaffold_13	alt_acceptor	520154	520155	+	asmbl_10485	none	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3	blat.proc3825172.chain_179	1
scaffold_18	alt_donor	12403762	12403763	-	asmbl_20149	none	blat.proc3825158.chain_2573	1	STRG.21708.1,blat.proc3825158.chain_2575	2
scaffold_26	alternate_exon	5556701	5559348	+	asmbl_35019	none	STRG.28266.1	1	STRG.28266.4	1
scaffold_5	retained_exon	15468880	15469028	+	asmbl_45991	none	STRG.6734.1	1	STRG.6734.2	1
scaffold_1	retained_exon	12814554	12814639	-	asmbl_773	none	STRG.906.1,blat.proc3825148.chain_889	2	STRG.906.2	1
scaffold_25	retained_exon	5428901	5428964	+	asmbl_33563	none	STRG.27454.1,blat.proc3825178.chain_459	2	blat.proc3825178.chain_458	1
scaffold_15	skipped_exon	12008633	12009572	-	asmbl_14553	none	STRG.18664.1,blat.proc3825156.chain_3538,blat.proc3825156.chain_3542	3	STRG.18664.3,blat.proc3825156.chain_3539,blat.proc3825156.chain_3541	3
scaffold_23	alternate_exon	7916246	7916870	-	asmbl_31059	none	STRG.26100.4,Trinity_GG_14594_c2_g1_i1,blat.proc3825160.chain_3256	3	STRG.26100.3	1
scaffold_24	retained_intron	2462777	2462837	-	asmbl_32786	none	Trinity_GG_14799_c0_g1_i1,blat.proc3825160.chain_3591	2	STRG.26472.1,blat.proc3825160.chain_3592	2
scaffold_12	starts_in_intron	4613210	4613210	-	asmbl_8417	none	STRG.14639.3	1	STRG.14639.1,STRG.14639.2,STRG.14639.4,blat.proc3825154.chain_3136,blat.proc3825154.chain_3138,blat.proc3825154.chain_3139,blat.proc3825154.chain_3140,blat.proc3825154.chain_3142	8
scaffold_21	alternate_exon	823657	834853	+	asmbl_28309	none	STRG.23777.2,blat.proc3825176.chain_911	2	STRG.23777.3	1
scaffold_13	starts_in_intron	8517947	8517947	+	asmbl_11133	none	Trinity_GG_26177_c0_g1_i1	1	STRG.16127.1,blat.proc3825172.chain_902	2
scaffold_13	starts_in_intron	11438780	11438780	-	asmbl_10094	none	blat.proc3825156.chain_1182	1	STRG.16302.1,STRG.16302.2,blat.proc3825156.chain_1180,blat.proc3825156.chain_1181	4
scaffold_3	alternate_exon	3096229	3096750	-	asmbl_38752	none	STRG.3064.1,blat.proc3825148.chain_2922	2	STRG.3064.2,blat.proc3825148.chain_2923	2
scaffold_6	alternate_exon	12390796	12391063	+	asmbl_47393	none	STRG.7997.2,Trinity_GG_21702_c0_g1_i2,blat.proc3825168.chain_467	3	STRG.7997.1,blat.proc3825168.chain_468	2
scaffold_11	alternate_exon	9699589	9699644	-	asmbl_6954	none	STRG.13992.5	1	STRG.13992.2,STRG.13992.3,Trinity_GG_7828_c1_g1_i1,Trinity_GG_7828_c1_g1_i3,blat.proc3825154.chain_2535,blat.proc3825154.chain_2538	6
scaffold_8	retained_intron	10239564	10239921	+	asmbl_53163,asmbl_53164	none	STRG.10282.3,Trinity_GG_22967_c0_g1_i4,blat.proc3825168.chain_2730,blat.proc3825168.chain_2732	4	STRG.10282.1,blat.proc3825168.chain_2729,blat.proc3825168.chain_2731	3
scaffold_4	alt_acceptor	1332586	1332587	-	asmbl_42367,asmbl_42369	none	STRG.4173.3,blat.proc3825150.chain_394	2	STRG.4173.2,STRG.4173.4,blat.proc3825150.chain_392,blat.proc3825150.chain_393,blat.proc3825150.chain_395	5
scaffold_5	spliced_intron	7320374	7320425	+	asmbl_45493	none	Trinity_GG_20663_c0_g2_i1	1	STRG.6129.1,blat.proc3825166.chain_2350	2
scaffold_10	alternate_exon	7605118	7605191	-	asmbl_4546	none	STRG.12553.2,blat.proc3825154.chain_1070	2	STRG.12553.1,STRG.12553.3,blat.proc3825154.chain_1069	3
scaffold_15	alt_donor	15413654	15413655	+	asmbl_15775,asmbl_15781	none	STRG.18953.3,blat.proc3825172.chain_3610	2	STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3609	3
scaffold_7	ends_in_intron	13867349	13867349	-	asmbl_51324	none	Trinity_GG_5315_c1_g1_i1,blat.proc3825152.chain_1821	2	STRG.9480.1,blat.proc3825152.chain_1822	2
scaffold_9	alternate_exon	11796762	11797060	-	asmbl_55305,asmbl_55306,asmbl_55308	none	STRG.11496.1,STRG.11496.2,blat.proc3825152.chain_3683,blat.proc3825152.chain_3684,blat.proc3825152.chain_3685	5	STRG.11496.3,STRG.11496.4,Trinity_GG_6326_c2_g1_i1,blat.proc3825152.chain_3686,blat.proc3825152.chain_3688	5
scaffold_13	retained_intron	7717718	7717809	-	asmbl_9906	none	blat.proc3825156.chain_891	1	STRG.16058.1,STRG.16058.2,blat.proc3825156.chain_888,blat.proc3825156.chain_889,blat.proc3825156.chain_890	5
scaffold_27	ends_in_intron	358247	358247	-	asmbl_36678	none	Trinity_GG_15982_c0_g1_i1,blat.proc3825162.chain_1795	2	STRG.28564.1,Trinity_GG_15982_c0_g1_i2,blat.proc3825162.chain_1796	3
scaffold_4	spliced_intron	4691328	4691558	+	asmbl_41296,asmbl_41297,asmbl_41298,asmbl_41299,asmbl_41300,asmbl_41301,asmbl_41302	none	STRG.4379.1,blat.proc3825166.chain_813,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_818,blat.proc3825166.chain_819,blat.proc3825166.chain_820	7	blat.proc3825166.chain_814	1
scaffold_16	ends_in_intron	8095942	8095942	+	asmbl_16380	none	blat.proc3825174.chain_320	1	STRG.19453.1,STRG.19453.2,Trinity_GG_27939_c0_g1_i1,blat.proc3825174.chain_321	4
scaffold_2	alt_donor	888423	888424	+	asmbl_24128,asmbl_24134	none	STRG.1565.1,STRG.1565.5,blat.proc3825164.chain_1711	3	STRG.1565.2,STRG.1565.3	2
scaffold_24	ends_in_intron	447088	447088	+	asmbl_32021	none	STRG.26337.2	1	STRG.26337.1,Trinity_GG_31878_c0_g1_i2,blat.proc3825176.chain_3325,blat.proc3825176.chain_3326	4
scaffold_1	spliced_intron	14274143	14274240	+	asmbl_2363,asmbl_2364	none	STRG.1023.1,STRG.1023.2,blat.proc3825164.chain_1208,blat.proc3825164.chain_1209	4	blat.proc3825164.chain_1210	1
scaffold_5	alt_acceptor	8411351	8411352	+	asmbl_45548,asmbl_45549,asmbl_45550	none	STRG.6187.1,STRG.6187.3,blat.proc3825166.chain_2304,blat.proc3825166.chain_2305,blat.proc3825166.chain_2306,blat.proc3825166.chain_2307	6	STRG.6187.2	1
scaffold_1	skipped_exon	11821382	11822845	+	asmbl_2154	none	STRG.801.1,Trinity_GG_17822_c0_g1_i1,blat.proc3825164.chain_986	3	STRG.801.2,Trinity_GG_17822_c0_g1_i3,blat.proc3825164.chain_987	3
scaffold_11	alt_acceptor	174663	174664	+	asmbl_5263,asmbl_5264,asmbl_5265,asmbl_5266,asmbl_5267,asmbl_5268	none	STRG.13247.1,Trinity_GG_24602_c0_g1_i3,blat.proc3825170.chain_1809,blat.proc3825170.chain_1810,blat.proc3825170.chain_1811,blat.proc3825170.chain_1812,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	8	STRG.13247.2	1
scaffold_4	ends_in_intron	9357309	9357309	-	asmbl_42811	none	blat.proc3825150.chain_953	1	STRG.4735.1	1
scaffold_28	alt_donor	5228265	5228266	-	asmbl_38260,asmbl_38263	none	STRG.29674.1,blat.proc3825162.chain_2846,blat.proc3825162.chain_2848	3	STRG.29674.2,blat.proc3825162.chain_2843	2
scaffold_15	starts_in_intron	3144959	3144959	-	asmbl_14077	none	blat.proc3825156.chain_2926	1	STRG.18094.1,blat.proc3825156.chain_2927	2
scaffold_14	alternate_exon	11649068	11649100	-	asmbl_13510	none	blat.proc3825156.chain_2337	1	STRG.17507.1,blat.proc3825156.chain_2338	2
scaffold_25	alternate_exon	6298086	6298555	-	asmbl_34345	none	blat.proc3825162.chain_904	1	STRG.27514.1,blat.proc3825162.chain_902,blat.proc3825162.chain_903	3
scaffold_12	spliced_intron	3331444	3331469	+	asmbl_7549	none	STRG.14555.3	1	STRG.14555.1,STRG.14555.2,STRG.14555.4,STRG.14555.5,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i2,Trinity_GG_25356_c0_g1_i3,Trinity_GG_25356_c0_g1_i4,blat.proc3825170.chain_3110,blat.proc3825170.chain_3111,blat.proc3825170.chain_3112	11
scaffold_6	spliced_intron	12653940	12654092	+	asmbl_47433	none	blat.proc3825168.chain_448	1	STRG.8027.2,Trinity_GG_21691_c1_g1_i4,blat.proc3825168.chain_447	3
scaffold_13	retained_intron	3570908	3571205	+	asmbl_10710,asmbl_10711	none	STRG.15671.2,STRG.15671.3,Trinity_GG_25901_c0_g1_i4,blat.proc3825172.chain_381,blat.proc3825172.chain_382	5	STRG.15671.1,blat.proc3825172.chain_380,blat.proc3825172.chain_383	3
scaffold_13	spliced_intron	4078795	4078887	+	asmbl_10759	none	STRG.15733.1,blat.proc3825172.chain_478	2	blat.proc3825172.chain_477	1
scaffold_9	spliced_intron	11843908	11844161	-	asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55332	none	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	8	blat.proc3825152.chain_3659	1
scaffold_3	alt_acceptor	11274350	11274351	+	asmbl_40337	none	STRG.3555.1,Trinity_GG_19329_c0_g1_i1,blat.proc3825166.chain_85	3	STRG.3555.2,Trinity_GG_19329_c0_g1_i2,blat.proc3825166.chain_84	3
scaffold_17	skipped_exon	7101219	7102087	+	asmbl_18894	none	STRG.20382.2,blat.proc3825174.chain_1181	2	STRG.20382.1,blat.proc3825174.chain_1182	2
scaffold_6	retained_intron	4538209	4538366	-	asmbl_48334,asmbl_48337	none	STRG.7434.4,STRG.7434.5,Trinity_GG_4189_c1_g2_i2	3	STRG.7434.3	1
scaffold_22	ends_in_intron	11547942	11547942	+	asmbl_30407,asmbl_30408	none	STRG.25505.2,STRG.25505.3	2	STRG.25505.1,blat.proc3825176.chain_2434,blat.proc3825176.chain_2435	3
scaffold_12	alt_acceptor	11324732	11324733	+	asmbl_7961	none	STRG.15068.3	1	STRG.15068.1,STRG.15068.2,Trinity_GG_25617_c0_g1_i1,Trinity_GG_25617_c0_g1_i2,blat.proc3825170.chain_3584,blat.proc3825170.chain_3585	6
scaffold_4	ends_in_intron	5883918	5883918	-	asmbl_42644	none	Trinity_GG_2513_c1_g1_i1,blat.proc3825150.chain_731	2	STRG.4480.2,blat.proc3825150.chain_728	2
scaffold_13	retained_intron	2506963	2507489	+	asmbl_10621,asmbl_10622	none	STRG.15559.3,Trinity_GG_25851_c0_g1_i1,Trinity_GG_25851_c0_g1_i2,blat.proc3825172.chain_286,blat.proc3825172.chain_287	5	STRG.15559.1,Trinity_GG_25851_c0_g1_i5,blat.proc3825172.chain_284	3
scaffold_6	starts_in_intron	13126040	13126040	-	asmbl_48878	none	blat.proc3825152.chain_465	1	STRG.8069.1,STRG.8069.2,blat.proc3825152.chain_466,blat.proc3825152.chain_467	4
scaffold_12	retained_intron	12307824	12308727	+	asmbl_7983	none	STRG.15133.3,Trinity_GG_25650_c0_g1_i1,blat.proc3825170.chain_3642	3	STRG.15133.1,STRG.15133.2,STRG.15133.5,blat.proc3825170.chain_3640	4
scaffold_9	skipped_exon	9870174	9871613	-	asmbl_55242	none	STRG.11356.1,Trinity_GG_6280_c0_g1_i6,blat.proc3825152.chain_3582	3	Trinity_GG_6280_c0_g1_i1,blat.proc3825152.chain_3583	2
scaffold_14	ends_in_intron	12220108	12220108	-	asmbl_13556	none	Trinity_GG_9856_c1_g1_i2,blat.proc3825156.chain_2379	2	STRG.17553.1	1
scaffold_23	starts_in_intron	5201267	5201267	-	asmbl_30898	none	Trinity_GG_14500_c0_g1_i2,blat.proc3825160.chain_3077	2	STRG.25900.1,Trinity_GG_14500_c0_g1_i3,blat.proc3825160.chain_3079	3
scaffold_21	alt_acceptor	1151178	1151179	+	asmbl_28330	none	STRG.23790.3	1	STRG.23790.2,Trinity_GG_30494_c0_g1_i2,blat.proc3825176.chain_1008	3
scaffold_14	spliced_intron	3161005	3161274	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11918,asmbl_11922,asmbl_11923,asmbl_11924	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	14	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605	2
scaffold_3	retained_intron	12773155	12773414	+	asmbl_40415	none	STRG.3668.1,Trinity_GG_19374_c0_g1_i2,blat.proc3825166.chain_174	3	STRG.3668.2,Trinity_GG_19374_c0_g1_i3,blat.proc3825166.chain_175	3
scaffold_8	retained_intron	6163758	6164314	-	asmbl_51865	none	blat.proc3825152.chain_2270	1	STRG.10030.1,STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	9
scaffold_4	ends_in_intron	12525685	12525685	-	asmbl_42916	none	Trinity_GG_2717_c0_g2_i2,blat.proc3825150.chain_1063	2	STRG.4886.1,Trinity_GG_2717_c0_g2_i1,blat.proc3825150.chain_1062	3
scaffold_17	retained_intron	9867881	9867999	-	asmbl_18213,asmbl_18215,asmbl_18217	none	STRG.20601.1,STRG.20601.2,blat.proc3825158.chain_1631	3	STRG.20601.3,blat.proc3825158.chain_1630	2
scaffold_15	ends_in_intron	9725571	9725571	+	asmbl_15404,asmbl_15405	none	STRG.18486.2,blat.proc3825172.chain_3071	2	STRG.18486.1,STRG.18486.3,blat.proc3825172.chain_3072	3
scaffold_6	retained_exon	15944966	15945017	+	asmbl_47680	none	STRG.8324.3	1	STRG.8324.2	1
scaffold_18	ends_in_intron	4727927	4727927	+	asmbl_20549	none	Trinity_GG_29020_c0_g1_i2,blat.proc3825174.chain_2214	2	STRG.21267.1,Trinity_GG_29020_c0_g1_i1,blat.proc3825174.chain_2213	3
scaffold_26	starts_in_intron	10122710	10122710	-	asmbl_35815	none	Trinity_GG_15946_c0_g1_i9,blat.proc3825162.chain_1713	2	STRG.28530.1,STRG.28530.2,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710,blat.proc3825162.chain_1712,blat.proc3825162.chain_1714,blat.proc3825162.chain_1715	10
scaffold_9	alt_donor	16664922	16664923	-	asmbl_55609	none	STRG.11805.2,blat.proc3825154.chain_185	2	STRG.11805.1,blat.proc3825154.chain_186	2
scaffold_8	retained_intron	5314598	5314889	-	asmbl_51831	none	STRG.9970.1,Trinity_GG_5527_c0_g1_i1,blat.proc3825152.chain_2164	3	STRG.9970.2,blat.proc3825152.chain_2165	2
scaffold_3	alternate_exon	17898491	17898537	+	asmbl_40714	none	STRG.4000.2	1	STRG.4000.1	1
scaffold_12	ends_in_intron	1976064	1976064	-	asmbl_8313	none	blat.proc3825154.chain_2923	1	STRG.14486.1,blat.proc3825154.chain_2922,blat.proc3825154.chain_2924	3
scaffold_1	alternate_exon	11068397	11068896	+	asmbl_2055,asmbl_2057	none	STRG.725.1,STRG.725.2,Trinity_GG_17736_c0_g1_i2,blat.proc3825164.chain_812	4	STRG.725.3,Trinity_GG_17736_c0_g1_i3,blat.proc3825164.chain_813	3
scaffold_6	alternate_exon	15944987	15945026	+	asmbl_47683	none	blat.proc3825152.chain_740	1	STRG.8324.2	1
scaffold_13	alt_donor	3330931	3330932	-	asmbl_9533	none	STRG.15642.2,blat.proc3825156.chain_520	2	STRG.15642.1,blat.proc3825156.chain_519	2
scaffold_2	alternate_exon	16080197	16080230	-	asmbl_23662,asmbl_23663	none	STRG.2557.1,STRG.2557.2,blat.proc3825148.chain_2488	3	STRG.2557.3	1
scaffold_5	alternate_exon	15706085	15707705	+	asmbl_46009,asmbl_46012	none	STRG.6765.1,blat.proc3825166.chain_2903,blat.proc3825166.chain_2904	3	STRG.6765.3	1
scaffold_5	alt_donor	6289650	6289651	+	asmbl_45418	none	Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	2	STRG.6040.1	1
scaffold_6	alt_acceptor	5056453	5056454	-	asmbl_48388,asmbl_48389,asmbl_48395	none	STRG.7486.1,STRG.7486.2,STRG.7486.3,blat.proc3825150.chain_3643,blat.proc3825150.chain_3645	5	STRG.7486.5	1
scaffold_18	retained_intron	11329326	11329551	+	asmbl_20941	none	Trinity_GG_29277_c0_g1_i3,blat.proc3825174.chain_2685	2	STRG.21676.1,STRG.21676.2,blat.proc3825174.chain_2683,blat.proc3825174.chain_2686,blat.proc3825174.chain_2691	5
scaffold_7	spliced_intron	9921560	9921694	-	asmbl_51101	none	STRG.9202.1,blat.proc3825152.chain_1568	2	Trinity_GG_5187_c0_g1_i3,blat.proc3825152.chain_1567	2
scaffold_2	alt_acceptor	20209538	20209539	+	asmbl_25306	none	STRG.2859.1,blat.proc3825164.chain_3093	2	STRG.2859.2	1
scaffold_5	alt_acceptor	12540554	12540555	-	asmbl_44464	none	STRG.6499.1	1	STRG.6499.2,STRG.6499.3,blat.proc3825150.chain_2702	3
scaffold_10	starts_in_intron	11127946	11127946	+	asmbl_3455	none	Trinity_GG_24360_c0_g1_i3,blat.proc3825170.chain_1384	2	STRG.12778.1,blat.proc3825170.chain_1383,blat.proc3825170.chain_1385	3
scaffold_18	alternate_exon	1602097	1602169	+	asmbl_20366	none	STRG.21042.1,blat.proc3825174.chain_1984	2	STRG.21042.2,blat.proc3825174.chain_1982,blat.proc3825174.chain_1983	3
scaffold_17	ends_in_intron	13035107	13035107	+	asmbl_19302	none	blat.proc3825174.chain_1674	1	STRG.20794.1,blat.proc3825174.chain_1673	2
scaffold_14	starts_in_intron	5886607	5886607	-	asmbl_13096	none	blat.proc3825156.chain_1857	1	STRG.17049.1,blat.proc3825156.chain_1858	2
scaffold_4	alternate_exon	18275974	18276005	-	asmbl_43355	none	STRG.5426.3	1	STRG.5426.1,STRG.5426.2	2
scaffold_26	alt_acceptor	9772791	9772792	+	asmbl_35263,asmbl_35266	none	STRG.28516.1,STRG.28516.7,blat.proc3825178.chain_1636	3	STRG.28516.2,blat.proc3825178.chain_1638	2
scaffold_1	starts_in_intron	5684486	5684486	+	asmbl_1749	none	blat.proc3825164.chain_493	1	STRG.368.1,STRG.368.2,blat.proc3825164.chain_494	3
scaffold_18	retained_intron	824174	824499	+	asmbl_20326,asmbl_20330	none	STRG.21008.2,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	3	blat.proc3825174.chain_1871	1
scaffold_19	alt_donor	11336381	11336382	-	asmbl_22381	none	STRG.22468.2,Trinity_GG_12501_c0_g1_i1,blat.proc3825158.chain_3223	3	STRG.22468.1,Trinity_GG_12501_c0_g1_i2,blat.proc3825158.chain_3222	3
scaffold_6	spliced_intron	12087982	12088116	-	asmbl_48793,asmbl_48794	none	STRG.7983.2,blat.proc3825152.chain_366	2	STRG.7983.1,Trinity_GG_4529_c0_g1_i1,blat.proc3825152.chain_367	3
scaffold_5	starts_in_intron	16507881	16507881	+	asmbl_46106	none	Trinity_GG_21048_c0_g1_i5,blat.proc3825166.chain_3017	2	STRG.6840.1,blat.proc3825166.chain_3016,blat.proc3825166.chain_3018	3
scaffold_3	alt_donor	11660951	11660952	+	asmbl_40371,asmbl_40373,asmbl_40375	none	STRG.3605.3,STRG.3605.5,Trinity_GG_19349_c0_g1_i4,Trinity_GG_19349_c0_g1_i8,blat.proc3825166.chain_120,blat.proc3825166.chain_121,blat.proc3825166.chain_125	7	STRG.3605.1,STRG.3605.2,STRG.3605.4,Trinity_GG_19349_c0_g1_i3,Trinity_GG_19349_c0_g1_i6,Trinity_GG_19349_c0_g1_i7,blat.proc3825166.chain_119,blat.proc3825166.chain_122,blat.proc3825166.chain_123,blat.proc3825166.chain_124	10
scaffold_10	alternate_exon	12965702	12966253	+	asmbl_3569	none	STRG.12892.2,blat.proc3825170.chain_1486	2	STRG.12892.3,Trinity_GG_24410_c2_g1_i1,blat.proc3825170.chain_1488	3
scaffold_3	alt_donor	6659645	6659646	+	asmbl_40106,asmbl_40111	none	STRG.3295.4,blat.proc3825164.chain_3560,blat.proc3825164.chain_3569	3	STRG.3295.1,STRG.3295.2,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565,blat.proc3825164.chain_3568	7
scaffold_25	alt_acceptor	5156185	5156186	-	asmbl_34249	none	STRG.27443.3	1	STRG.27443.1,STRG.27443.2,blat.proc3825162.chain_805,blat.proc3825162.chain_806,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809,blat.proc3825162.chain_810	8
scaffold_7	ends_in_intron	706618	706618	-	asmbl_50689	none	STRG.8607.3,Trinity_GG_4922_c0_g1_i5,blat.proc3825152.chain_1072	3	STRG.8607.2,Trinity_GG_4922_c0_g1_i3,blat.proc3825152.chain_1070,blat.proc3825152.chain_1071,blat.proc3825152.chain_1073	5
scaffold_4	alt_acceptor	14285621	14285622	-	asmbl_43039,asmbl_43040	none	STRG.5037.3,STRG.5037.4	2	STRG.5037.1,STRG.5037.2,blat.proc3825150.chain_1100,blat.proc3825150.chain_1101	4
scaffold_9	spliced_intron	13297144	13297188	-	asmbl_55423,asmbl_55424	none	STRG.11628.1,STRG.11628.3	2	STRG.11628.4	1
scaffold_28	alt_acceptor	7255312	7255313	+	asmbl_37655,asmbl_37659	none	STRG.29793.1,STRG.29793.3,Trinity_GG_33812_c0_g1_i2,blat.proc3825178.chain_2945	4	STRG.29793.2,STRG.29793.4,Trinity_GG_33812_c0_g1_i1,blat.proc3825178.chain_2947	4
scaffold_9	alternate_exon	568171	570763	+	asmbl_53774	none	STRG.10788.2	1	Trinity_GG_23309_c0_g1_i4,blat.proc3825168.chain_3341	2
scaffold_15	alt_donor	15353636	15353637	+	asmbl_15757,asmbl_15758	none	Trinity_GG_27686_c0_g1_i7,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3561	4	STRG.18922.3,Trinity_GG_27686_c0_g1_i4,blat.proc3825172.chain_3565	3
scaffold_27	alt_acceptor	3912135	3912136	-	asmbl_36932	none	STRG.28851.1,blat.proc3825162.chain_2101	2	STRG.28851.2	1
scaffold_10	ends_in_intron	14691579	14691579	+	asmbl_3653	none	blat.proc3825170.chain_1572	1	STRG.13014.1,STRG.13014.2,STRG.13014.3,blat.proc3825170.chain_1571	4
scaffold_1	spliced_intron	13100329	13100568	-	asmbl_793	none	blat.proc3825148.chain_867	1	STRG.947.1,blat.proc3825148.chain_865	2
scaffold_7	spliced_intron	12414914	12415002	-	asmbl_51215,asmbl_51216,asmbl_51217	none	STRG.9346.1,blat.proc3825152.chain_1701,blat.proc3825152.chain_1703,blat.proc3825152.chain_1705	4	blat.proc3825152.chain_1704	1
scaffold_1	alt_donor	102815	102816	+	asmbl_1395,asmbl_1397	none	STRG.12.1,blat.proc3825164.chain_106,blat.proc3825164.chain_107	3	blat.proc3825164.chain_108,blat.proc3825164.chain_109	2
scaffold_7	ends_in_intron	12370319	12370319	+	asmbl_50248	none	blat.proc3825168.chain_1873	1	STRG.9336.1,blat.proc3825168.chain_1875,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878,blat.proc3825168.chain_1879	5
scaffold_6	starts_in_intron	9169042	9169042	-	asmbl_48613	none	Trinity_GG_4395_c0_g1_i1,blat.proc3825152.chain_159	2	STRG.7795.1,Trinity_GG_4395_c0_g1_i3,blat.proc3825152.chain_158	3
scaffold_10	starts_in_intron	8907382	8907382	+	asmbl_3339	none	blat.proc3825170.chain_1227	1	STRG.12636.1,STRG.12636.2,blat.proc3825170.chain_1225,blat.proc3825170.chain_1226	4
scaffold_24	alt_acceptor	1423234	1423235	-	asmbl_32729	none	STRG.26396.2,Trinity_GG_14697_c0_g1_i2,blat.proc3825160.chain_3423	3	STRG.26396.1,Trinity_GG_14697_c0_g1_i3,blat.proc3825160.chain_3422	3
scaffold_12	spliced_intron	10187619	10188436	-	asmbl_8732	none	STRG.14994.2,blat.proc3825154.chain_3517	2	blat.proc3825154.chain_3519	1
scaffold_26	alt_donor	1322195	1322196	-	asmbl_35398,asmbl_35401	none	STRG.27913.1,STRG.27913.3	2	STRG.27913.2,blat.proc3825162.chain_1237	2
scaffold_25	skipped_exon	5827048	5828229	-	asmbl_34293,asmbl_34294	none	blat.proc3825162.chain_879,blat.proc3825162.chain_880	2	STRG.27479.1,STRG.27479.2,STRG.27479.3,STRG.27479.4,blat.proc3825162.chain_876,blat.proc3825162.chain_877,blat.proc3825162.chain_878	7
scaffold_11	alternate_exon	8708129	8708261	-	asmbl_6866	none	STRG.13900.1,Trinity_GG_7758_c1_g1_i1,blat.proc3825154.chain_2424	3	STRG.13900.2	1
scaffold_11	alternate_exon	11637327	11637401	+	asmbl_5986,asmbl_5988	none	blat.proc3825170.chain_2635,blat.proc3825170.chain_2640	2	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2634,blat.proc3825170.chain_2636,blat.proc3825170.chain_2638,blat.proc3825170.chain_2639	6
scaffold_5	alternate_exon	7443169	7443276	-	asmbl_44184	none	STRG.6148.2	1	STRG.6148.1	1
scaffold_11	retained_exon	13035576	13035747	-	asmbl_7114	none	STRG.14179.3,blat.proc3825154.chain_2756	2	STRG.14179.1,blat.proc3825154.chain_2755,blat.proc3825154.chain_2757	3
scaffold_15	alternate_exon	16342098	16342282	-	asmbl_14828	none	STRG.18987.2,blat.proc3825158.chain_58	2	STRG.18987.1,blat.proc3825158.chain_57	2
scaffold_10	starts_in_intron	4128505	4128505	-	asmbl_4263	none	Trinity_GG_6845_c0_g2_i1,blat.proc3825154.chain_831	2	STRG.12250.1,STRG.12250.2,STRG.12250.3,blat.proc3825154.chain_829,blat.proc3825154.chain_830	5
scaffold_24	retained_intron	6834417	6834757	+	asmbl_32353	none	blat.proc3825176.chain_3732	1	STRG.26736.1,STRG.26736.2,STRG.26736.4,blat.proc3825176.chain_3729,blat.proc3825176.chain_3734	5
scaffold_12	ends_in_intron	98020	98020	-	asmbl_8270	none	STRG.14420.2,blat.proc3825154.chain_2939	2	STRG.14420.1,blat.proc3825154.chain_2940	2
scaffold_11	spliced_intron	4756244	4756446	+	asmbl_5518,asmbl_5520	none	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2116	3	blat.proc3825170.chain_2117	1
scaffold_8	retained_intron	7508319	7508462	+	asmbl_52990	none	STRG.10076.2,Trinity_GG_22920_c0_g1_i1,blat.proc3825168.chain_2643	3	STRG.10076.1,blat.proc3825168.chain_2644	2
scaffold_6	starts_in_intron	7350627	7350627	+	asmbl_47073	none	Trinity_GG_21496_c0_g1_i2,blat.proc3825168.chain_76	2	STRG.7644.1,blat.proc3825168.chain_75	2
scaffold_12	retained_exon	3330692	3330742	+	asmbl_7546,asmbl_7549,asmbl_7550	none	STRG.14555.1,STRG.14555.3,STRG.14555.5,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i3,blat.proc3825170.chain_3112	6	STRG.14555.2,Trinity_GG_25356_c0_g1_i2,blat.proc3825170.chain_3110	3
scaffold_22	retained_exon	10044915	10045098	-	asmbl_29581	none	STRG.25357.2	1	STRG.25357.3	1
scaffold_26	spliced_intron	4109409	4109599	+	asmbl_34859,asmbl_34860	none	STRG.28106.1,STRG.28106.2,blat.proc3825178.chain_1160	3	STRG.28106.3	1
scaffold_20	ends_in_intron	9500367	9500367	+	asmbl_26853	none	blat.proc3825176.chain_637	1	STRG.23489.2,blat.proc3825176.chain_635,blat.proc3825176.chain_636	3
scaffold_5	retained_intron	5045141	5045424	+	asmbl_45325,asmbl_45328	none	STRG.5958.4,blat.proc3825166.chain_2128	2	STRG.5958.2,blat.proc3825166.chain_2127	2
scaffold_18	ends_in_intron	8726700	8726700	+	asmbl_20860,asmbl_20863	none	blat.proc3825174.chain_2619,blat.proc3825174.chain_2621	2	STRG.21537.1,STRG.21537.2,STRG.21537.3,blat.proc3825174.chain_2615,blat.proc3825174.chain_2616,blat.proc3825174.chain_2617,blat.proc3825174.chain_2618,blat.proc3825174.chain_2620	8
scaffold_3026	spliced_intron	358	614	+	asmbl_40913	none	STRG.30816.1	1	STRG.30816.2,blat.proc3825178.chain_3715	2
scaffold_2	spliced_intron	3899965	3900066	+	asmbl_24316,asmbl_24317,asmbl_24319	none	STRG.1826.1,STRG.1826.2,STRG.1826.3,blat.proc3825164.chain_2000,blat.proc3825164.chain_2003,blat.proc3825164.chain_2004	6	blat.proc3825164.chain_1999,blat.proc3825164.chain_2002	2
scaffold_5	alt_donor	16519191	16519192	-	asmbl_44751	none	Trinity_GG_3836_c0_g2_i1,blat.proc3825150.chain_3018	2	STRG.6842.1,blat.proc3825150.chain_3017	2
scaffold_22	alt_acceptor	5937041	5937042	+	asmbl_30073	none	STRG.24944.2	1	STRG.24944.3	1
scaffold_25	retained_intron	101644	101716	+	asmbl_33315	none	blat.proc3825178.chain_245	1	STRG.27044.1,Trinity_GG_32253_c0_g1_i2,blat.proc3825178.chain_244	3
scaffold_3	alt_acceptor	14496087	14496088	-	asmbl_39382	none	Trinity_GG_2093_c0_g1_i1,blat.proc3825148.chain_3719	2	STRG.3790.1,Trinity_GG_2093_c0_g1_i2,blat.proc3825148.chain_3720	3
scaffold_3	alt_acceptor	16346254	16346255	-	asmbl_39499,asmbl_39501	none	STRG.3910.1,blat.proc3825150.chain_114,blat.proc3825150.chain_115	3	STRG.3910.3,Trinity_GG_2173_c1_g1_i2,Trinity_GG_2173_c2_g1_i2,blat.proc3825150.chain_119,blat.proc3825150.chain_120	5
scaffold_28	skipped_exon	6546896	6548299	-	asmbl_38353	none	STRG.29753.4	1	STRG.29753.1,STRG.29753.2,STRG.29753.3	3
scaffold_12	retained_exon	12451939	12451978	+	asmbl_8007	none	STRG.15151.3	1	STRG.15151.2	1
scaffold_2	alt_donor	3470174	3470175	+	asmbl_24287	none	STRG.1777.1,Trinity_GG_18310_c0_g1_i1,blat.proc3825164.chain_1916	3	STRG.1777.2	1
scaffold_12	retained_intron	5636130	5636448	-	asmbl_8517	none	STRG.14715.1,blat.proc3825154.chain_3252	2	Trinity_GG_8225_c0_g1_i1,blat.proc3825154.chain_3253	2
scaffold_23	ends_in_intron	2379620	2379620	+	asmbl_31400	none	blat.proc3825176.chain_2655	1	STRG.25712.1,blat.proc3825176.chain_2654	2
scaffold_7	alternate_exon	1402667	1417394	-	asmbl_50722	none	blat.proc3825152.chain_1118	1	blat.proc3825152.chain_1117	1
scaffold_4	spliced_intron	3211226	3211758	-	asmbl_42410	none	STRG.4244.2	1	STRG.4244.1,Trinity_GG_2318_c0_g1_i2,Trinity_GG_2318_c0_g1_i3,blat.proc3825150.chain_387,blat.proc3825150.chain_388	5
scaffold_24	alternate_exon	7153501	7158329	-	asmbl_33012	none	STRG.26764.1,blat.proc3825162.chain_117	2	STRG.26764.2,blat.proc3825162.chain_116	2
scaffold_16	starts_in_intron	12347114	12347114	+	asmbl_16638	none	blat.proc3825174.chain_660	1	STRG.19745.1,blat.proc3825174.chain_658	2
scaffold_3	alternate_exon	17145474	17145534	+	asmbl_40654,asmbl_40658	none	STRG.3958.3,blat.proc3825166.chain_458	2	STRG.3958.1,blat.proc3825166.chain_460	2
scaffold_17	alt_acceptor	10023592	10023593	+	asmbl_19155	none	STRG.20619.3	1	STRG.20619.1,STRG.20619.2	2
scaffold_16	spliced_intron	6199474	6199753	+	asmbl_16298,asmbl_16300	none	STRG.19371.1,STRG.19371.2,blat.proc3825174.chain_251	3	Trinity_GG_27898_c0_g1_i3,blat.proc3825174.chain_249	2
scaffold_9	alt_acceptor	6719846	6719847	-	asmbl_55069	none	STRG.11187.3	1	STRG.11187.1,STRG.11187.2	2
scaffold_4	retained_intron	15296018	15296103	+	asmbl_41938	none	STRG.5125.3,Trinity_GG_20176_c0_g1_i2,blat.proc3825166.chain_1526	3	STRG.5125.2	1
scaffold_2	retained_exon	10136911	10137082	+	asmbl_24697,asmbl_24698	none	STRG.2200.1,STRG.2200.3,blat.proc3825164.chain_2404,blat.proc3825164.chain_2406	4	STRG.2200.2,blat.proc3825164.chain_2407	2
scaffold_6	alternate_exon	3793008	3793461	+	asmbl_46858	none	STRG.7378.1,blat.proc3825166.chain_3633	2	STRG.7378.2,blat.proc3825166.chain_3632	2
scaffold_9	alt_donor	4849349	4849350	+	asmbl_53963	none	Trinity_GG_23406_c0_g1_i2,blat.proc3825168.chain_3480	2	STRG.11060.1,blat.proc3825168.chain_3479	2
scaffold_14	ends_in_intron	1376529	1376529	-	asmbl_12880	none	blat.proc3825156.chain_1623	1	STRG.16791.1,STRG.16791.2,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625,blat.proc3825156.chain_1626	5
scaffold_23	starts_in_intron	7916159	7916159	-	asmbl_31058,asmbl_31061	none	STRG.26100.1,blat.proc3825160.chain_3253,blat.proc3825160.chain_3254	3	STRG.26100.2,STRG.26100.3,blat.proc3825160.chain_3255	3
scaffold_8	starts_in_intron	18107529	18107529	+	asmbl_53533	none	STRG.10716.3,Trinity_GG_23260_c0_g1_i2,blat.proc3825168.chain_3250	3	STRG.10716.1,STRG.10716.2,Trinity_GG_23260_c0_g1_i1,Trinity_GG_23260_c0_g1_i3,blat.proc3825168.chain_3249,blat.proc3825168.chain_3251	6
scaffold_5	alt_donor	15715981	15715982	-	asmbl_44720	none	STRG.6762.1	1	blat.proc3825150.chain_2950	1
scaffold_28	retained_intron	4562120	4562213	-	asmbl_38216	none	STRG.29632.2,Trinity_GG_16613_c0_g1_i3,blat.proc3825162.chain_2815	3	STRG.29632.1,Trinity_GG_16613_c0_g1_i1,Trinity_GG_16613_c0_g1_i4,blat.proc3825162.chain_2816,blat.proc3825162.chain_2817	5
scaffold_11	spliced_intron	8099585	8099683	+	asmbl_5721,asmbl_5722,asmbl_5723,asmbl_5724,asmbl_5726,asmbl_5727	none	STRG.13822.1,STRG.13822.2,STRG.13822.3,STRG.13822.4,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i2,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2345,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	14	Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342	2
scaffold_4	alt_acceptor	18558566	18558567	-	asmbl_43382	none	blat.proc3825150.chain_1651	1	STRG.5460.1,STRG.5460.2,blat.proc3825150.chain_1650,blat.proc3825150.chain_1652	4
scaffold_13	retained_intron	3352875	3353012	-	asmbl_9536	none	blat.proc3825156.chain_528	1	STRG.15647.1,blat.proc3825156.chain_529	2
scaffold_22	alt_acceptor	9725622	9725623	+	asmbl_30317	none	STRG.25310.1,blat.proc3825176.chain_2357	2	STRG.25310.2	1
scaffold_2	spliced_intron	8302850	8304172	+	asmbl_24627,asmbl_24628	none	STRG.2114.2,STRG.2114.4,blat.proc3825164.chain_2308,blat.proc3825164.chain_2311	4	STRG.2114.3,Trinity_GG_18510_c0_g1_i4,blat.proc3825164.chain_2309	3
scaffold_2	starts_in_intron	20425006	20425006	+	asmbl_25328	none	Trinity_GG_18935_c0_g1_i2,blat.proc3825164.chain_3114	2	STRG.2881.1,STRG.2881.2,blat.proc3825164.chain_3113	3
scaffold_24	retained_intron	5882035	5882303	-	asmbl_32908	none	STRG.26654.3,blat.proc3825162.chain_34	2	STRG.26654.1,STRG.26654.2,blat.proc3825162.chain_35,blat.proc3825162.chain_36,blat.proc3825162.chain_37	5
scaffold_23	spliced_intron	6289651	6289837	-	asmbl_30968,asmbl_30969,asmbl_30972	none	STRG.25975.1,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,blat.proc3825160.chain_3189,blat.proc3825160.chain_3191,blat.proc3825160.chain_3193	7	STRG.25975.2,STRG.25975.3,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i6,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3188,blat.proc3825160.chain_3190,blat.proc3825160.chain_3192	9
scaffold_6	alt_donor	16876793	16876794	-	asmbl_49170	none	STRG.8405.2,blat.proc3825152.chain_872	2	STRG.8405.3,blat.proc3825152.chain_871	2
scaffold_17	spliced_intron	4005466	4005564	+	asmbl_18761	none	STRG.20163.2,blat.proc3825174.chain_1054	2	blat.proc3825174.chain_1055	1
scaffold_25	alt_donor	8700414	8700415	-	asmbl_34463	none	STRG.27695.2,blat.proc3825162.chain_1020	2	STRG.27695.3,STRG.27695.5,blat.proc3825162.chain_1023	3
scaffold_8	alternate_exon	6119754	6121052	+	asmbl_52945	none	STRG.10015.3	1	STRG.10015.2	1
scaffold_4	retained_intron	4099761	4100917	+	asmbl_41230	none	STRG.4316.1,Trinity_GG_19673_c0_g2_i1,blat.proc3825166.chain_699	3	STRG.4316.2,blat.proc3825166.chain_696	2
scaffold_19	spliced_intron	13140882	13141025	+	asmbl_21854	none	STRG.22633.3	1	STRG.22633.1,blat.proc3825174.chain_3654	2
scaffold_3	spliced_intron	1466208	1466551	-	asmbl_38708	none	STRG.2965.2,blat.proc3825148.chain_2865	2	STRG.2965.1,blat.proc3825148.chain_2864	2
scaffold_8	retained_intron	9872527	9872652	-	asmbl_52060	none	blat.proc3825152.chain_2491	1	STRG.10234.1,blat.proc3825152.chain_2490	2
scaffold_12	alternate_exon	10611616	10611666	+	asmbl_7953	none	STRG.15044.2	1	STRG.15044.1,blat.proc3825170.chain_3550	2
scaffold_19	alt_acceptor	6468857	6468858	+	asmbl_21416	none	STRG.22172.1,blat.proc3825174.chain_3173	2	STRG.22172.2,blat.proc3825174.chain_3172	2
scaffold_16	retained_exon	125615	125642	+	asmbl_16001	none	STRG.19007.4	1	STRG.19007.2,STRG.19007.3,Trinity_GG_27742_c0_g1_i2,blat.proc3825172.chain_3685	4
scaffold_5	alternate_exon	10539585	10539696	-	asmbl_44367	none	Trinity_GG_3563_c0_g1_i7	1	STRG.6340.1,STRG.6340.3,STRG.6340.4,Trinity_GG_3563_c0_g1_i4,blat.proc3825150.chain_2535,blat.proc3825150.chain_2537,blat.proc3825150.chain_2538	7
scaffold_11	alt_donor	7049578	7049579	+	asmbl_5644,asmbl_5647	none	STRG.13733.1,STRG.13733.4,Trinity_GG_24878_c0_g1_i2,blat.proc3825170.chain_2272	4	STRG.13733.2,STRG.13733.3,STRG.13733.5,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2273	7
scaffold_2	alt_donor	14194633	14194634	-	asmbl_23566	none	STRG.2416.1	1	STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	4
scaffold_24	retained_exon	9953522	9953644	-	asmbl_33160,asmbl_33162	none	STRG.26968.2,STRG.26968.6	2	STRG.26968.1,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_271,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	7
scaffold_21	alt_acceptor	5548749	5548750	+	asmbl_28580	none	blat.proc3825176.chain_1302	1	STRG.24088.1,STRG.24088.2,blat.proc3825176.chain_1303,blat.proc3825176.chain_1304,blat.proc3825176.chain_1305	5
scaffold_18	starts_in_intron	238253	238253	-	asmbl_19569	none	blat.proc3825158.chain_1926	1	STRG.20979.1,STRG.20979.2,blat.proc3825158.chain_1923,blat.proc3825158.chain_1925	4
scaffold_9	starts_in_intron	3665108	3665108	+	asmbl_53911	none	Trinity_GG_23413_c0_g1_i2	1	STRG.10971.2,blat.proc3825168.chain_3493	2
scaffold_1	alternate_exon	11740050	11745094	+	asmbl_2141	none	STRG.789.2,blat.proc3825164.chain_970	2	Trinity_GG_17813_c0_g1_i2,blat.proc3825164.chain_972	2
scaffold_15	ends_in_intron	12391492	12391492	-	asmbl_14576	none	STRG.18695.4	1	STRG.18695.2,STRG.18695.3	2
scaffold_28	alt_donor	761499	761500	-	asmbl_37931,asmbl_37933	none	STRG.29291.1,STRG.29291.3,blat.proc3825162.chain_2381,blat.proc3825162.chain_2383	4	STRG.29291.4,blat.proc3825162.chain_2382	2
scaffold_17	skipped_exon	2354078	2358464	+	asmbl_18642	none	STRG.20030.5	1	STRG.20030.1,blat.proc3825174.chain_907,blat.proc3825174.chain_909	3
scaffold_1	retained_exon	15281399	15281618	+	asmbl_2437	none	STRG.1094.1	1	STRG.1094.3,blat.proc3825164.chain_1250	2
scaffold_27	alt_donor	5015701	5015702	+	asmbl_36334,asmbl_36336	none	STRG.28933.2,STRG.28933.3,Trinity_GG_33329_c0_g1_i3,blat.proc3825178.chain_2138,blat.proc3825178.chain_2139	5	STRG.28933.1,blat.proc3825178.chain_2137	2
scaffold_21	alternate_exon	9831858	9836478	-	asmbl_27969	none	STRG.24440.1,Trinity_GG_13643_c1_g1_i1,blat.proc3825160.chain_1606	3	STRG.24440.3	1
scaffold_28	retained_intron	6557835	6557938	-	asmbl_38361,asmbl_38362	none	STRG.29755.2,blat.proc3825162.chain_2943	2	STRG.29755.1,blat.proc3825162.chain_2944	2
scaffold_6	ends_in_intron	18221150	18221150	+	asmbl_47822	none	Trinity_GG_21999_c0_g1_i2,blat.proc3825168.chain_986	2	STRG.8499.1	1
scaffold_21	alternate_exon	5255282	5259849	-	asmbl_27628	none	STRG.24058.1,blat.proc3825160.chain_1206,blat.proc3825160.chain_1208	3	STRG.24058.2	1
scaffold_26	alt_acceptor	8576993	8576994	+	asmbl_35181	none	STRG.28441.1,blat.proc3825178.chain_1555	2	STRG.28441.2,blat.proc3825178.chain_1556	2
scaffold_14	retained_exon	151717	151802	-	asmbl_12779,asmbl_12782	none	STRG.16711.6,blat.proc3825156.chain_1518	2	STRG.16711.2,STRG.16711.3,blat.proc3825156.chain_1521	3
scaffold_4	retained_exon	5677972	5678066	+	asmbl_41366	none	STRG.4467.2	1	STRG.4467.1,blat.proc3825166.chain_933	2
scaffold_11	spliced_intron	1985399	1985437	+	asmbl_5351	none	blat.proc3825154.chain_1937	1	STRG.13361.1	1
scaffold_19	retained_intron	8219321	8219439	-	asmbl_22283	none	blat.proc3825158.chain_3084,blat.proc3825158.chain_3085	2	STRG.22275.2	1
scaffold_27	starts_in_intron	6603041	6603041	-	asmbl_37064	none	blat.proc3825162.chain_2260	1	STRG.29038.1,blat.proc3825162.chain_2259	2
scaffold_28	retained_intron	9681871	9681946	+	asmbl_37802	none	blat.proc3825178.chain_3138	1	STRG.29999.1,blat.proc3825178.chain_3139,blat.proc3825178.chain_3140	3
scaffold_7	retained_intron	1235897	1237950	+	asmbl_49602	none	STRG.8637.2	1	Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	2
scaffold_13	alt_donor	11580943	11580944	+	asmbl_11280,asmbl_11281	none	STRG.16314.1,blat.proc3825172.chain_1011,blat.proc3825172.chain_1013	3	blat.proc3825172.chain_1012	1
scaffold_6	ends_in_intron	7620045	7620045	+	asmbl_47085	none	Trinity_GG_21502_c1_g1_i1,blat.proc3825168.chain_93	2	STRG.7660.1,Trinity_GG_21502_c1_g1_i2,blat.proc3825168.chain_92	3
scaffold_21	retained_intron	10497854	10497950	-	asmbl_28048,asmbl_28049	none	STRG.24519.2,blat.proc3825160.chain_1740,blat.proc3825160.chain_1742	3	STRG.24519.1,blat.proc3825160.chain_1741,blat.proc3825160.chain_1743,blat.proc3825160.chain_1745	4
scaffold_6	spliced_intron	5752777	5753623	+	asmbl_46973,asmbl_46974,asmbl_46976,asmbl_46977,asmbl_46978	none	STRG.7534.1,blat.proc3825166.chain_3731,blat.proc3825166.chain_3732,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	6	blat.proc3825166.chain_3735	1
scaffold_2	alt_donor	15460782	15460783	-	asmbl_23631	none	Trinity_GG_1357_c0_g1_i1,blat.proc3825148.chain_2450	2	STRG.2497.1	1
scaffold_20	alt_acceptor	428803	428804	+	asmbl_26350,asmbl_26351,asmbl_26352	none	STRG.22745.1,STRG.22745.2,STRG.22745.5,Trinity_GG_16850_c4_g1_i1,Trinity_GG_29876_c0_g1_i1,blat.proc3825174.chain_3743,blat.proc3825174.chain_3744	7	STRG.22745.4	1
scaffold_12	spliced_intron	9687346	9687437	-	asmbl_8691,asmbl_8693	none	STRG.14946.1,STRG.14946.3,blat.proc3825154.chain_3467	3	Trinity_GG_8342_c0_g1_i2,blat.proc3825154.chain_3466	2
scaffold_26	retained_intron	5487654	5488597	+	asmbl_34999	none	STRG.28257.1,Trinity_GG_32935_c0_g1_i1,Trinity_GG_32935_c0_g1_i2,Trinity_GG_32935_c1_g1_i1,Trinity_GG_32935_c1_g1_i2,blat.proc3825178.chain_1361,blat.proc3825178.chain_1362,blat.proc3825178.chain_1363,blat.proc3825178.chain_1364	9	STRG.28257.2,STRG.28257.4,Trinity_GG_32935_c1_g2_i1,blat.proc3825178.chain_1368,blat.proc3825178.chain_1369	5
scaffold_6	retained_intron	4713791	4713882	+	asmbl_46897,asmbl_46899	none	STRG.7460.1,STRG.7460.2,Trinity_GG_21386_c0_g1_i2,Trinity_GG_21386_c0_g1_i3,blat.proc3825166.chain_3643,blat.proc3825166.chain_3644	6	STRG.7460.4,Trinity_GG_21386_c0_g1_i1,blat.proc3825166.chain_3645	3
scaffold_4	alternate_exon	5079528	5079618	+	asmbl_41334	none	STRG.4398.2,Trinity_GG_19718_c0_g1_i1,blat.proc3825166.chain_773	3	STRG.4398.1,Trinity_GG_19718_c0_g1_i2,blat.proc3825166.chain_774	3
scaffold_1	retained_intron	19006450	19006518	+	asmbl_2572,asmbl_2573	none	STRG.1324.2,STRG.1324.4	2	STRG.1324.1	1
scaffold_19	retained_intron	13007510	13007898	+	asmbl_21839	none	Trinity_GG_29821_c0_g1_i3,blat.proc3825174.chain_3648	2	STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i10,Trinity_GG_29821_c0_g1_i11,blat.proc3825174.chain_3645,blat.proc3825174.chain_3646,blat.proc3825174.chain_3650	7
scaffold_24	starts_in_intron	2520890	2520890	-	asmbl_32794	none	blat.proc3825160.chain_3608	1	STRG.26474.1,blat.proc3825160.chain_3606	2
scaffold_9	starts_in_intron	3376168	3376168	+	asmbl_53891	none	Trinity_GG_23368_c0_g2_i1,Trinity_GG_23368_c0_g2_i2,blat.proc3825168.chain_3421,blat.proc3825168.chain_3422	4	STRG.10943.1,blat.proc3825168.chain_3418,blat.proc3825168.chain_3420	3
scaffold_6	ends_in_intron	12007198	12007198	+	asmbl_47369	none	Trinity_GG_21672_c0_g1_i4,blat.proc3825168.chain_411	2	STRG.7971.1	1
scaffold_14	spliced_intron	1067639	1067750	+	asmbl_11792,asmbl_11795,asmbl_11796,asmbl_11797	none	STRG.16766.2,blat.proc3825172.chain_1533,blat.proc3825172.chain_1535,blat.proc3825172.chain_1539	4	STRG.16766.1,STRG.16766.3,STRG.16766.4,STRG.16766.5,blat.proc3825172.chain_1536,blat.proc3825172.chain_1537	6
scaffold_18	retained_exon	9634957	9635118	-	asmbl_20066	none	blat.proc3825158.chain_2480	1	STRG.21576.1,blat.proc3825158.chain_2478	2
scaffold_19	starts_in_intron	11482563	11482563	-	asmbl_22403	none	STRG.22486.3	1	STRG.22486.1,STRG.22486.2,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	5
scaffold_11	alt_acceptor	171779	171780	+	asmbl_5261	none	STRG.13244.1	1	STRG.13244.2,blat.proc3825170.chain_1820	2
scaffold_2258	retained_exon	293	402	-	asmbl_30560	none	STRG.30733.2	1	STRG.30733.1	1
scaffold_9	alt_donor	66929	66930	+	asmbl_53745,asmbl_53746	none	STRG.10765.2,blat.proc3825168.chain_3292	2	STRG.10765.1	1
scaffold_21	spliced_intron	3015285	3015391	+	asmbl_28433,asmbl_28435,asmbl_28437	none	STRG.23928.2,blat.proc3825176.chain_1102,blat.proc3825176.chain_1103,blat.proc3825176.chain_1105	4	blat.proc3825176.chain_1104	1
scaffold_13	alt_acceptor	663555	663556	-	asmbl_9365	none	STRG.15453.1,Trinity_GG_8668_c0_g1_i3,blat.proc3825156.chain_313	3	STRG.15453.2,Trinity_GG_8668_c0_g1_i4,Trinity_GG_8668_c0_g1_i5,blat.proc3825156.chain_312,blat.proc3825156.chain_315	5
scaffold_11	spliced_intron	8100269	8100367	+	asmbl_5721,asmbl_5722,asmbl_5723,asmbl_5724,asmbl_5727	none	STRG.13822.1,STRG.13822.2,STRG.13822.3,STRG.13822.4,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	12	Trinity_GG_24917_c0_g1_i2,Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342,blat.proc3825170.chain_2345	4
scaffold_9	retained_intron	11795862	11796216	-	asmbl_55307	none	Trinity_GG_6326_c1_g1_i1,blat.proc3825152.chain_3687	2	STRG.11496.3,STRG.11496.4,blat.proc3825152.chain_3686	3
scaffold_1	alt_donor	4234172	4234173	+	asmbl_1653,asmbl_1654,asmbl_1655	none	STRG.256.3,STRG.256.4,STRG.256.5	3	STRG.256.1,STRG.256.2,blat.proc3825164.chain_400,blat.proc3825164.chain_401,blat.proc3825164.chain_402,blat.proc3825164.chain_403,blat.proc3825164.chain_404	7
scaffold_9	ends_in_intron	17846982	17846982	-	asmbl_55689	none	Trinity_GG_6574_c0_g1_i4,blat.proc3825154.chain_365	2	STRG.11870.1,blat.proc3825154.chain_363	2
scaffold_23	skipped_exon	4321528	4322836	-	asmbl_30859	none	STRG.25850.1,blat.proc3825160.chain_3044	2	STRG.25850.2	1
scaffold_17	starts_in_intron	9023649	9023649	+	asmbl_19061	none	STRG.20531.2,blat.proc3825174.chain_1341	2	STRG.20531.1,blat.proc3825174.chain_1342	2
scaffold_26	starts_in_intron	5041177	5041177	+	asmbl_34948,asmbl_34951,asmbl_34952	none	blat.proc3825178.chain_1169,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173	3	STRG.28240.1,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180	8
scaffold_8	ends_in_intron	28136	28136	-	asmbl_51686	none	blat.proc3825152.chain_2049	1	STRG.9705.1,blat.proc3825152.chain_2050	2
scaffold_20	retained_exon	652096	652296	-	asmbl_25507	none	STRG.22768.2	1	STRG.22768.1,blat.proc3825158.chain_3613	2
scaffold_14	spliced_intron	11686951	11687213	-	asmbl_13521,asmbl_13523,asmbl_13525	none	STRG.17516.1,STRG.17516.2,STRG.17516.3,blat.proc3825156.chain_2313,blat.proc3825156.chain_2316	5	blat.proc3825156.chain_2314	1
scaffold_11	ends_in_intron	8598381	8598381	+	asmbl_5812	none	STRG.13876.2	1	STRG.13876.1,STRG.13876.3,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i3,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2448,blat.proc3825170.chain_2449	9
scaffold_12	alt_acceptor	977226	977227	-	asmbl_8283	none	STRG.14442.3,blat.proc3825154.chain_2956	2	STRG.14442.1,STRG.14442.4,blat.proc3825154.chain_2958	3
scaffold_22	alt_acceptor	7437595	7437596	-	asmbl_29401,asmbl_29402	none	STRG.25084.4,STRG.25084.5,blat.proc3825160.chain_2248	3	STRG.25084.1,STRG.25084.2,STRG.25084.3,blat.proc3825160.chain_2245,blat.proc3825160.chain_2246,blat.proc3825160.chain_2247	6
scaffold_6	starts_in_intron	9769922	9769922	+	asmbl_47239	none	blat.proc3825168.chain_234	1	STRG.7823.1,blat.proc3825168.chain_233	2
scaffold_22	alternate_exon	4287584	4287946	-	asmbl_29237	none	STRG.24854.6,Trinity_GG_13910_c2_g1_i1,blat.proc3825160.chain_2089	3	STRG.24854.3	1
scaffold_17	alt_donor	13844643	13844644	-	asmbl_18382	none	STRG.20860.3	1	STRG.20860.1,blat.proc3825158.chain_1779	2
scaffold_6	starts_in_intron	4317854	4317854	+	asmbl_46882	none	blat.proc3825166.chain_3611	1	STRG.7409.1,STRG.7409.2,STRG.7409.3,Trinity_GG_21371_c0_g1_i7,blat.proc3825166.chain_3612,blat.proc3825166.chain_3613,blat.proc3825166.chain_3614,blat.proc3825166.chain_3615	8
scaffold_18	alternate_exon	3223543	3223601	-	asmbl_19755	none	STRG.21165.1	1	STRG.21165.2,blat.proc3825158.chain_2122,blat.proc3825158.chain_2123	3
scaffold_14	alt_acceptor	6062175	6062176	+	asmbl_12050	none	STRG.17065.1	1	STRG.17065.2,Trinity_GG_26693_c0_g1_i1,blat.proc3825172.chain_1809	3
scaffold_22	starts_in_intron	7120713	7120713	+	asmbl_30158,asmbl_30159	none	Trinity_GG_31177_c0_g1_i3,Trinity_GG_31177_c0_g1_i6,blat.proc3825176.chain_2177,blat.proc3825176.chain_2180	4	STRG.25047.1,STRG.25047.2,blat.proc3825176.chain_2179,blat.proc3825176.chain_2181	4
scaffold_16	alt_acceptor	11291579	11291580	+	asmbl_16571,asmbl_16572	none	STRG.19661.2,STRG.19661.3	2	STRG.19661.1,blat.proc3825174.chain_590	2
scaffold_149	retained_intron	113	1567	+	asmbl_13898	none	STRG.30192.1,Trinity_GG_34029_c0_g1_i1,Trinity_GG_34029_c0_g2_i1,Trinity_GG_34029_c1_g1_i1,Trinity_GG_34029_c2_g1_i1,blat.proc3825178.chain_3305,blat.proc3825178.chain_3308,blat.proc3825178.chain_3309,blat.proc3825178.chain_3310	9	STRG.30192.2,blat.proc3825178.chain_3306	2
scaffold_4	alt_donor	5231129	5231130	-	asmbl_42574,asmbl_42577	none	STRG.4416.2,STRG.4416.4,blat.proc3825150.chain_648	3	blat.proc3825150.chain_650	1
scaffold_14	retained_intron	13223477	13223628	+	asmbl_12466	none	blat.proc3825172.chain_2332	1	STRG.17622.1,STRG.17622.2,STRG.17622.3,STRG.17622.4,blat.proc3825172.chain_2329,blat.proc3825172.chain_2330,blat.proc3825172.chain_2335	7
scaffold_6	starts_in_intron	5752485	5752485	+	asmbl_46977,asmbl_46978	none	blat.proc3825166.chain_3731,blat.proc3825166.chain_3732	2	STRG.7534.1,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	4
scaffold_13	alt_acceptor	734147	734148	+	asmbl_10506	none	STRG.15459.1,blat.proc3825172.chain_122	2	STRG.15459.2,STRG.15459.3	2
scaffold_13	starts_in_intron	13238133	13238133	+	asmbl_11372	none	Trinity_GG_26333_c0_g1_i1,blat.proc3825172.chain_1198	2	STRG.16396.1,blat.proc3825172.chain_1200,blat.proc3825172.chain_1201	3
scaffold_10	ends_in_intron	5539213	5539213	-	asmbl_4372	none	Trinity_GG_6890_c0_g2_i1,blat.proc3825154.chain_900	2	STRG.12373.1	1
scaffold_1	alt_donor	16095725	16095726	-	asmbl_976	none	STRG.1129.4	1	STRG.1129.2,STRG.1129.3,blat.proc3825148.chain_1117,blat.proc3825148.chain_1118,blat.proc3825148.chain_1120	5
scaffold_4	alt_acceptor	10873340	10873341	-	asmbl_42861,asmbl_42862,asmbl_42864	none	STRG.4808.1,blat.proc3825150.chain_986,blat.proc3825150.chain_987,blat.proc3825150.chain_989	4	blat.proc3825150.chain_988	1
scaffold_28	alt_donor	4239994	4239995	+	asmbl_37529	none	STRG.29613.2	1	STRG.29613.1	1
scaffold_2	skipped_exon	19025086	19025969	-	asmbl_23847	none	blat.proc3825148.chain_2738	1	blat.proc3825148.chain_2737	1
scaffold_6	spliced_intron	4535550	4536418	-	asmbl_48336	none	STRG.7434.1,blat.proc3825150.chain_3583	2	STRG.7434.3,STRG.7434.4,Trinity_GG_4189_c0_g1_i1,blat.proc3825150.chain_3582	4
scaffold_1	skipped_exon	22133297	22135023	+	asmbl_2685	none	STRG.1487.2	1	STRG.1487.1	1
scaffold_20	alternate_exon	7823193	7824134	-	asmbl_25928	none	STRG.23333.1,blat.proc3825160.chain_410	2	blat.proc3825160.chain_413	1
scaffold_10	retained_intron	3129058	3129956	-	asmbl_4166	none	STRG.12138.2,Trinity_GG_6767_c0_g1_i1,Trinity_GG_6767_c0_g1_i4,blat.proc3825154.chain_699,blat.proc3825154.chain_700	5	STRG.12138.1,Trinity_GG_6767_c0_g1_i3,blat.proc3825154.chain_701	3
scaffold_27	starts_in_intron	6708902	6708902	+	asmbl_36405	none	Trinity_GG_33387_c0_g1_i4	1	STRG.29044.1,STRG.29044.2,STRG.29044.3	3
scaffold_13	spliced_intron	1532474	1532709	+	asmbl_10565,asmbl_10567	none	STRG.15517.1,Trinity_GG_25847_c0_g1_i1,Trinity_GG_25847_c0_g1_i2,blat.proc3825172.chain_274,blat.proc3825172.chain_276	5	Trinity_GG_25847_c0_g1_i3,blat.proc3825172.chain_275	2
scaffold_8	alt_acceptor	11111141	11111142	+	asmbl_53196	none	STRG.10324.1,blat.proc3825168.chain_2894	2	STRG.10324.2,blat.proc3825168.chain_2893	2
scaffold_7	spliced_intron	17808816	17808944	+	asmbl_50497,asmbl_50500,asmbl_50501	none	STRG.9628.1,blat.proc3825168.chain_2134,blat.proc3825168.chain_2135,blat.proc3825168.chain_2136	4	blat.proc3825168.chain_2133	1
scaffold_14	spliced_intron	11388081	11388304	-	asmbl_13476,asmbl_13477,asmbl_13478	none	STRG.17477.1,STRG.17477.2,STRG.17477.3,blat.proc3825156.chain_2292,blat.proc3825156.chain_2295	5	STRG.17477.4,blat.proc3825156.chain_2291	2
scaffold_20	alt_donor	631333	631334	-	asmbl_25502	none	STRG.22765.2,blat.proc3825158.chain_3608	2	blat.proc3825158.chain_3611	1
scaffold_21	ends_in_intron	5146147	5146147	-	asmbl_27616	none	blat.proc3825160.chain_1232	1	blat.proc3825160.chain_1234,blat.proc3825160.chain_1236	2
scaffold_340	retained_intron	2968	3178	+	asmbl_41010,asmbl_41012	none	STRG.30295.4,STRG.30295.5,Trinity_GG_34083_c0_g1_i8,blat.proc3825178.chain_3395	4	STRG.30295.1,STRG.30295.2,STRG.30295.3	3
scaffold_22	retained_intron	10004898	10005099	+	asmbl_30337	none	STRG.25343.1	1	blat.proc3825176.chain_2411	1
scaffold_11	retained_intron	8600562	8601135	+	asmbl_5809	none	Trinity_GG_24974_c0_g1_i3,blat.proc3825170.chain_2448	2	STRG.13876.1,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2449	6
scaffold_21	spliced_intron	5979198	5979219	-	asmbl_27712	none	STRG.24137.1	1	STRG.24137.2,STRG.24137.3	2
scaffold_11	alternate_exon	1950869	1951838	+	asmbl_5347	none	STRG.13354.1,blat.proc3825170.chain_1904	2	blat.proc3825170.chain_1903	1
scaffold_10	alt_acceptor	2721488	2721489	+	asmbl_2998,asmbl_2999	none	STRG.12090.1,STRG.12090.2,Trinity_GG_24012_c0_g1_i4,blat.proc3825170.chain_794,blat.proc3825170.chain_795	5	Trinity_GG_24012_c0_g1_i3,blat.proc3825170.chain_792	2
scaffold_3	alternate_exon	1766890	1766937	+	asmbl_39878,asmbl_39879	none	STRG.2994.2,STRG.2994.3,Trinity_GG_19006_c0_g1_i5,blat.proc3825164.chain_3227	4	STRG.2994.1	1
scaffold_1	alt_donor	14355987	14355988	-	asmbl_899	none	blat.proc3825148.chain_1036	1	blat.proc3825148.chain_1037,blat.proc3825148.chain_1040	2
scaffold_4	spliced_intron	19357077	19357176	-	asmbl_43433,asmbl_43436,asmbl_43437,asmbl_43438,asmbl_43440	none	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1680,blat.proc3825150.chain_1681,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	6	Trinity_GG_3086_c0_g1_i3,blat.proc3825150.chain_1679,blat.proc3825150.chain_1687,blat.proc3825150.chain_1688	4
scaffold_18	retained_intron	4571830	4572199	+	asmbl_20534	none	blat.proc3825174.chain_2216	1	STRG.21248.1,STRG.21248.2,blat.proc3825174.chain_2217,blat.proc3825174.chain_2218,blat.proc3825174.chain_2219	5
scaffold_9	alternate_exon	11539738	11539954	+	asmbl_54355,asmbl_54357	none	STRG.11471.1,STRG.11471.2,Trinity_GG_23714_c0_g1_i2,blat.proc3825170.chain_296	4	STRG.11471.3	1
scaffold_5	ends_in_intron	946675	946675	-	asmbl_43796	none	Trinity_GG_3135_c0_g1_i1,blat.proc3825150.chain_1788	2	STRG.5641.1,blat.proc3825150.chain_1789	2
scaffold_7	ends_in_intron	4392380	4392380	+	asmbl_49731	none	blat.proc3825168.chain_1272	1	Trinity_GG_22151_c0_g1_i1,Trinity_GG_22151_c0_g1_i3,blat.proc3825168.chain_1270,blat.proc3825168.chain_1271	4
scaffold_3	alternate_exon	10630202	10632045	+	asmbl_40282,asmbl_40283,asmbl_40284,asmbl_40289	none	STRG.3513.3,STRG.3513.4,STRG.3513.6,STRG.3513.7,Trinity_GG_19247_c1_g1_i1,blat.proc3825164.chain_3682,blat.proc3825164.chain_3689	7	blat.proc3825164.chain_3683,blat.proc3825164.chain_3685	2
scaffold_9	retained_intron	16656048	16656688	-	asmbl_55606	none	blat.proc3825154.chain_282	1	STRG.11813.1,blat.proc3825154.chain_279,blat.proc3825154.chain_280,blat.proc3825154.chain_281	4
scaffold_10	ends_in_intron	11489245	11489245	+	asmbl_3461	none	blat.proc3825170.chain_1417	1	STRG.12802.1	1
scaffold_6	skipped_exon	16887339	16888534	-	asmbl_49176	none	STRG.8411.3,Trinity_GG_4777_c0_g1_i3,blat.proc3825152.chain_822	3	STRG.8411.2,Trinity_GG_4777_c0_g1_i2,blat.proc3825152.chain_819	3
scaffold_5	retained_intron	8539438	8539884	-	asmbl_44216,asmbl_44219	none	blat.proc3825150.chain_2422,blat.proc3825150.chain_2423	2	STRG.6198.3,STRG.6198.4,blat.proc3825150.chain_2421	3
scaffold_21	alternate_exon	4108681	4108708	+	asmbl_28510	none	STRG.23987.3	1	STRG.23987.1,STRG.23987.2,blat.proc3825176.chain_1205,blat.proc3825176.chain_1207	4
scaffold_16	alt_acceptor	4137446	4137447	-	asmbl_17051	none	STRG.19229.2,blat.proc3825158.chain_421	2	STRG.19229.4,blat.proc3825158.chain_423	2
scaffold_4	ends_in_intron	16873805	16873805	-	asmbl_43226	none	Trinity_GG_2919_c0_g2_i1,blat.proc3825150.chain_1393	2	STRG.5273.1,STRG.5273.2,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	4
scaffold_17	skipped_exon	2354078	2355866	+	asmbl_18639,asmbl_18642	none	STRG.20030.5,STRG.20030.7	2	STRG.20030.2,STRG.20030.4,STRG.20030.6	3
scaffold_6	starts_in_intron	17504191	17504191	-	asmbl_49192	none	Trinity_GG_4796_c1_g1_i1	1	blat.proc3825152.chain_848	1
scaffold_12	alt_donor	2661785	2661786	+	asmbl_7509	none	blat.proc3825170.chain_3089	1	STRG.14507.1,STRG.14507.3,blat.proc3825170.chain_3085,blat.proc3825170.chain_3088	4
scaffold_4	starts_in_intron	12705791	12705791	+	asmbl_41741	none	blat.proc3825166.chain_1319	1	STRG.4912.1,STRG.4912.2,blat.proc3825166.chain_1321,blat.proc3825166.chain_1322	4
scaffold_7	alt_acceptor	16131757	16131758	-	asmbl_51401	none	STRG.9574.2,Trinity_GG_5375_c0_g1_i1,blat.proc3825152.chain_1919	3	STRG.9574.1,Trinity_GG_5375_c0_g1_i2,blat.proc3825152.chain_1920	3
scaffold_2	retained_intron	15270410	15270515	+	asmbl_25019	none	blat.proc3825164.chain_2618	1	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	6
scaffold_14	spliced_intron	7297974	7298196	+	asmbl_12149,asmbl_12150,asmbl_12151	none	STRG.17169.1,STRG.17169.2,STRG.17169.3,blat.proc3825172.chain_1939,blat.proc3825172.chain_1940	5	blat.proc3825172.chain_1941,blat.proc3825172.chain_1942	2
scaffold_20	retained_intron	8338716	8338886	-	asmbl_25978,asmbl_25982,asmbl_25983,asmbl_25984	none	STRG.23378.1,blat.proc3825160.chain_506,blat.proc3825160.chain_508,blat.proc3825160.chain_509,blat.proc3825160.chain_510	5	STRG.23378.2,STRG.23378.3,blat.proc3825160.chain_507,blat.proc3825160.chain_512	4
scaffold_16	retained_exon	4721588	4721704	+	asmbl_16198,asmbl_16199	none	STRG.19254.1,STRG.19254.2,blat.proc3825174.chain_49,blat.proc3825174.chain_50	4	STRG.19254.3	1
scaffold_21	ends_in_intron	1068913	1068913	+	asmbl_28322	none	STRG.23785.2,Trinity_GG_30443_c1_g1_i1,blat.proc3825176.chain_922	3	STRG.23785.1,STRG.23785.3,Trinity_GG_30443_c0_g1_i1,blat.proc3825176.chain_920,blat.proc3825176.chain_921	5
scaffold_25	alt_acceptor	8484358	8484359	-	asmbl_34447	none	STRG.27681.1,blat.proc3825162.chain_995	2	STRG.27681.2	1
scaffold_26	spliced_intron	4593627	4593805	-	asmbl_35567	none	STRG.28182.2	1	Trinity_GG_15782_c0_g1_i1,blat.proc3825162.chain_1435,blat.proc3825162.chain_1437	3
scaffold_2	retained_intron	5391853	5391989	-	asmbl_23149	none	blat.proc3825148.chain_1877	1	STRG.1948.1,blat.proc3825148.chain_1875,blat.proc3825148.chain_1876	3
scaffold_2	spliced_intron	14562874	14562960	+	asmbl_24954,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24961	none	STRG.2464.1,STRG.2464.2,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2657,blat.proc3825164.chain_2662,blat.proc3825164.chain_2665	7	STRG.2464.3,Trinity_GG_18675_c0_g1_i6,blat.proc3825164.chain_2660	3
scaffold_21	alternate_exon	3165289	3178422	+	asmbl_28456,asmbl_28457,asmbl_28468,asmbl_28469	none	STRG.23959.1,blat.proc3825176.chain_1132,blat.proc3825176.chain_1137,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	5	STRG.23959.6	1
scaffold_6	retained_exon	19115124	19115246	-	asmbl_49300,asmbl_49301,asmbl_49304	none	STRG.8585.1,STRG.8585.3,Trinity_GG_4894_c0_g1_i1,Trinity_GG_4894_c0_g1_i2,Trinity_GG_4894_c0_g1_i5,blat.proc3825152.chain_1021,blat.proc3825152.chain_1022	7	STRG.8585.4,STRG.8585.5,Trinity_GG_4894_c0_g1_i4	3
scaffold_5	alt_donor	19275251	19275252	+	asmbl_46314	none	STRG.7028.4	1	STRG.7028.2,Trinity_GG_21182_c0_g1_i3,blat.proc3825166.chain_3242	3
scaffold_4	starts_in_intron	15437578	15437578	-	asmbl_43100	none	blat.proc3825150.chain_1220	1	STRG.5137.1,blat.proc3825150.chain_1219	2
scaffold_13	alt_donor	8169932	8169933	-	asmbl_9945	none	STRG.16106.1,Trinity_GG_9038_c0_g1_i1,blat.proc3825156.chain_990	3	STRG.16106.2	1
scaffold_14	starts_in_intron	13222328	13222328	+	asmbl_12468,asmbl_12469	none	STRG.17622.3,STRG.17622.4	2	STRG.17622.1,STRG.17622.2,blat.proc3825172.chain_2329,blat.proc3825172.chain_2330,blat.proc3825172.chain_2332,blat.proc3825172.chain_2335	6
scaffold_14	alt_acceptor	1970214	1970215	+	asmbl_11843	none	STRG.16821.2	1	STRG.16821.1,blat.proc3825172.chain_1594	2
scaffold_3	spliced_intron	5951454	5951658	-	asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38882,asmbl_38887	none	STRG.3259.1,STRG.3259.3,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3161,blat.proc3825148.chain_3165	6	STRG.3259.2,blat.proc3825148.chain_3163,blat.proc3825148.chain_3164	3
scaffold_2	spliced_intron	14277290	14277855	+	asmbl_24897,asmbl_24898,asmbl_24899,asmbl_24900,asmbl_24901,asmbl_24904,asmbl_24905	none	STRG.2428.1,STRG.2428.2,STRG.2428.3,STRG.2428.4,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596	7	blat.proc3825164.chain_2592	1
scaffold_9	retained_intron	15395597	15395679	+	asmbl_54571	none	Trinity_GG_23876_c0_g1_i7,blat.proc3825170.chain_553	2	STRG.11741.1,STRG.11741.2,STRG.11741.3,Trinity_GG_23876_c0_g1_i2,Trinity_GG_23876_c0_g1_i5,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i8,blat.proc3825170.chain_552,blat.proc3825170.chain_555,blat.proc3825170.chain_556,blat.proc3825170.chain_557	11
scaffold_8	spliced_intron	8733193	8733226	+	asmbl_53030	none	STRG.10134.4	1	STRG.10134.1,STRG.10134.3,Trinity_GG_22941_c1_g1_i1,blat.proc3825168.chain_2681	4
scaffold_9	ends_in_intron	3673271	3673271	-	asmbl_54928	none	blat.proc3825152.chain_3212	1	STRG.10993.1,STRG.10993.2,STRG.10993.4,STRG.10993.5,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3215	7
scaffold_23	ends_in_intron	10975547	10975547	+	asmbl_31894	none	Trinity_GG_31796_c0_g1_i8,blat.proc3825176.chain_3180	2	STRG.26307.1,STRG.26307.2,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	6
scaffold_15	retained_intron	6104285	6104570	-	asmbl_14246	none	Trinity_GG_10288_c0_g1_i2,blat.proc3825156.chain_3142	2	STRG.18273.1,blat.proc3825156.chain_3140,blat.proc3825156.chain_3141	3
scaffold_28	spliced_intron	105779	105881	-	asmbl_37891,asmbl_37892,asmbl_37893	none	STRG.29246.1,blat.proc3825162.chain_2421,blat.proc3825162.chain_2423,blat.proc3825162.chain_2426	4	blat.proc3825162.chain_2424	1
scaffold_4	alt_donor	1333960	1333961	-	asmbl_42366,asmbl_42370	none	STRG.4173.2,blat.proc3825150.chain_392,blat.proc3825150.chain_393	3	STRG.4173.3,STRG.4173.4,blat.proc3825150.chain_394,blat.proc3825150.chain_395	4
scaffold_10	alt_donor	8546470	8546471	-	asmbl_4599	none	Trinity_GG_7055_c0_g1_i1	1	STRG.12610.3,blat.proc3825154.chain_1228,blat.proc3825154.chain_1230	3
scaffold_6	skipped_exon	298817	299335	+	asmbl_46650	none	STRG.7091.4,Trinity_GG_21228_c0_g1_i1,blat.proc3825166.chain_3316	3	STRG.7091.2,Trinity_GG_21228_c0_g1_i3,blat.proc3825166.chain_3318	3
scaffold_18	spliced_intron	5990415	5990661	+	asmbl_20638,asmbl_20641,asmbl_20642,asmbl_20646	none	blat.proc3825174.chain_2286,blat.proc3825174.chain_2288,blat.proc3825174.chain_2289,blat.proc3825174.chain_2290,blat.proc3825174.chain_2291,blat.proc3825174.chain_2292,blat.proc3825174.chain_2293	7	blat.proc3825174.chain_2285	1
scaffold_21	retained_intron	8529229	8529354	+	asmbl_28821,asmbl_28822	none	blat.proc3825176.chain_1462,blat.proc3825176.chain_1464	2	STRG.24391.1,blat.proc3825176.chain_1459,blat.proc3825176.chain_1461,blat.proc3825176.chain_1465	4
scaffold_22	retained_exon	9721164	9721268	+	asmbl_30314	none	STRG.25308.3	1	STRG.25308.4	1
scaffold_27	alt_acceptor	381931	381932	-	asmbl_36682,asmbl_36683,asmbl_36684	none	STRG.28567.1,STRG.28567.3,STRG.28567.5,blat.proc3825162.chain_1731,blat.proc3825162.chain_1733,blat.proc3825162.chain_1735	6	STRG.28567.4,blat.proc3825162.chain_1736	2
scaffold_9	starts_in_intron	10242362	10242362	+	asmbl_54277	none	Trinity_GG_23667_c0_g1_i10,Trinity_GG_23667_c0_g1_i4,blat.proc3825170.chain_225,blat.proc3825170.chain_226	4	STRG.11371.1,STRG.11371.2,blat.proc3825170.chain_224,blat.proc3825170.chain_230	4
scaffold_17	retained_intron	8355294	8355515	+	asmbl_18987	none	STRG.20457.3,Trinity_GG_28517_c0_g1_i3,blat.proc3825174.chain_1299	3	STRG.20457.2,blat.proc3825174.chain_1301	2
scaffold_4	retained_intron	4417303	4417393	+	asmbl_41250,asmbl_41256,asmbl_41257	none	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	4	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_842,blat.proc3825166.chain_847,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_851	13
scaffold_16	spliced_intron	11941207	11941371	+	asmbl_16615	none	STRG.19715.2	1	STRG.19715.1	1
scaffold_21	spliced_intron	1053775	1054170	-	asmbl_27374,asmbl_27380	none	STRG.23787.2,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922	3	STRG.23787.3,STRG.23787.4,Trinity_GG_13262_c0_g1_i1,Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_925,blat.proc3825160.chain_926	6
scaffold_26	alt_acceptor	4327635	4327636	-	asmbl_35542,asmbl_35544,asmbl_35545,asmbl_35546	none	STRG.28149.1,STRG.28149.2,STRG.28149.3,STRG.28149.4	4	STRG.28149.5	1
scaffold_23	alt_acceptor	9424898	9424899	+	asmbl_31793,asmbl_31795	none	STRG.26164.1,STRG.26164.2,blat.proc3825176.chain_3144	3	STRG.26164.3,Trinity_GG_31776_c1_g1_i1,blat.proc3825176.chain_3143	3
scaffold_27	retained_intron	2536912	2537126	+	asmbl_36088	none	blat.proc3825178.chain_1812	1	STRG.28724.1,blat.proc3825178.chain_1813	2
scaffold_15	starts_in_intron	15206288	15206288	-	asmbl_14760	none	blat.proc3825158.chain_33	1	STRG.18909.1,blat.proc3825158.chain_32	2
scaffold_6	alt_acceptor	7515546	7515547	-	asmbl_48497,asmbl_48498,asmbl_48499,asmbl_48502	none	STRG.7655.1,STRG.7655.2,STRG.7655.4,STRG.7655.5,blat.proc3825152.chain_13,blat.proc3825152.chain_14	6	STRG.7655.3,Trinity_GG_4298_c0_g1_i2,blat.proc3825152.chain_11,blat.proc3825152.chain_12,blat.proc3825152.chain_15	5
scaffold_2	retained_exon	10137643	10137814	+	asmbl_24698,asmbl_24699	none	STRG.2200.2,STRG.2200.3,blat.proc3825164.chain_2406,blat.proc3825164.chain_2407	4	STRG.2200.1,blat.proc3825164.chain_2404	2
scaffold_5	alternate_exon	3592704	3592810	-	asmbl_43922	none	STRG.5831.3,blat.proc3825150.chain_2044	2	STRG.5831.1	1
scaffold_7	retained_exon	8186754	8186825	+	asmbl_49962	none	STRG.9051.2,blat.proc3825168.chain_1529	2	STRG.9051.1,blat.proc3825168.chain_1530	2
scaffold_13	alternate_exon	4591094	4591164	+	asmbl_10817	none	STRG.15788.1	1	STRG.15788.2	1
scaffold_14	alt_acceptor	10479548	10479549	+	asmbl_12322	none	STRG.17398.1,blat.proc3825172.chain_2142	2	blat.proc3825172.chain_2144	1
scaffold_5	retained_exon	2166760	2166978	-	asmbl_43876	none	STRG.5754.2	1	STRG.5754.1,blat.proc3825150.chain_1989	2
scaffold_20	starts_in_intron	10369137	10369137	+	asmbl_26952	none	STRG.23575.2	1	STRG.23575.1	1
scaffold_13	starts_in_intron	4603031	4603031	-	asmbl_9646,asmbl_9649	none	Trinity_GG_8874_c0_g1_i6,blat.proc3825156.chain_662,blat.proc3825156.chain_673	3	STRG.15796.1,Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665,blat.proc3825156.chain_666,blat.proc3825156.chain_670	5
scaffold_7	starts_in_intron	2500769	2500769	-	asmbl_50755	none	Trinity_GG_4962_c0_g1_i6	1	STRG.8685.1,STRG.8685.2	2
scaffold_21	skipped_exon	3126012	3126710	-	asmbl_27513	none	STRG.23943.4,blat.proc3825160.chain_1057	2	STRG.23943.3,Trinity_GG_13335_c0_g1_i1,blat.proc3825160.chain_1056,blat.proc3825160.chain_1060	4
scaffold_10	alt_donor	5811430	5811431	+	asmbl_3204,asmbl_3206	none	STRG.12403.2,STRG.12403.3,blat.proc3825170.chain_1095	3	STRG.12403.1,blat.proc3825170.chain_1096,blat.proc3825170.chain_1097	3
scaffold_19	ends_in_intron	3035452	3035452	-	asmbl_22082	none	STRG.21992.2,blat.proc3825158.chain_2748	2	STRG.21992.1	1
scaffold_13	retained_intron	352660	353097	-	asmbl_9304	none	blat.proc3825156.chain_308,blat.proc3825156.chain_310	2	STRG.15440.1,Trinity_GG_8667_c0_g1_i11,Trinity_GG_8667_c0_g1_i6,Trinity_GG_8667_c0_g1_i7,Trinity_GG_8667_c0_g1_i9,blat.proc3825156.chain_305,blat.proc3825156.chain_307,blat.proc3825156.chain_309,blat.proc3825156.chain_311	9
scaffold_14	spliced_intron	13900780	13900986	+	asmbl_12512,asmbl_12515	none	STRG.17673.2,blat.proc3825172.chain_2394	2	blat.proc3825172.chain_2396	1
scaffold_9	alt_donor	3413856	3413857	-	asmbl_54901	none	blat.proc3825152.chain_3203	1	STRG.10955.1,STRG.10955.3,blat.proc3825152.chain_3205	3
scaffold_5	skipped_exon	10889948	10890320	-	asmbl_44383,asmbl_44386	none	STRG.6367.2,blat.proc3825150.chain_2462,blat.proc3825150.chain_2463	3	STRG.6367.1,blat.proc3825150.chain_2460,blat.proc3825150.chain_2461	3
scaffold_25	skipped_exon	8668191	8669550	+	asmbl_33740	none	STRG.27689.1,blat.proc3825178.chain_785	2	STRG.27689.3,blat.proc3825178.chain_783	2
scaffold_24	alternate_exon	2962922	2965098	-	asmbl_32806	none	STRG.26507.1,blat.proc3825160.chain_3584,blat.proc3825160.chain_3586	3	STRG.26507.2	1
scaffold_17	alt_acceptor	6808728	6808729	+	asmbl_18877	none	STRG.20335.1,Trinity_GG_28412_c1_g1_i1,blat.proc3825174.chain_1113	3	STRG.20335.3	1
scaffold_14	spliced_intron	11386935	11387002	-	asmbl_13478	none	STRG.17477.3,blat.proc3825156.chain_2295	2	blat.proc3825156.chain_2294	1
scaffold_6	retained_intron	5753701	5753903	+	asmbl_46975,asmbl_46977	none	blat.proc3825166.chain_3731,blat.proc3825166.chain_3735	2	STRG.7534.1,blat.proc3825166.chain_3732,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	5
scaffold_16	alternate_exon	12648927	12649025	+	asmbl_16642,asmbl_16643	none	STRG.19759.2,blat.proc3825174.chain_662	2	STRG.19759.1,blat.proc3825174.chain_663	2
scaffold_2	alt_acceptor	481946	481947	-	asmbl_22802,asmbl_22803	none	STRG.1532.1,STRG.1532.3,blat.proc3825148.chain_1467	3	STRG.1532.2	1
scaffold_18	alt_acceptor	8593262	8593263	+	asmbl_20849	none	STRG.21525.3	1	STRG.21525.1,blat.proc3825174.chain_2586	2
scaffold_1	retained_exon	13100303	13100328	-	asmbl_793	none	blat.proc3825148.chain_867	1	STRG.947.2,blat.proc3825148.chain_866	2
scaffold_8	spliced_intron	16384026	16384136	+	asmbl_53446	none	STRG.10618.1,Trinity_GG_23214_c0_g1_i1,blat.proc3825168.chain_3160	3	STRG.10618.2	1
scaffold_11	starts_in_intron	4680478	4680478	-	asmbl_6614	none	Trinity_GG_7600_c0_g1_i2,blat.proc3825154.chain_2146	2	STRG.13564.1,STRG.13564.2,STRG.13564.4,STRG.13564.5,blat.proc3825154.chain_2144,blat.proc3825154.chain_2145,blat.proc3825154.chain_2147	7
scaffold_21	alt_donor	8137223	8137224	-	asmbl_27892	none	blat.proc3825160.chain_1509	1	blat.proc3825160.chain_1511,blat.proc3825160.chain_1512	2
scaffold_27	starts_in_intron	6072564	6072564	+	asmbl_36373	none	Trinity_GG_33361_c0_g1_i3,blat.proc3825178.chain_2201	2	STRG.29007.1,STRG.29007.2,blat.proc3825178.chain_2203	3
scaffold_16	starts_in_intron	2170839	2170839	+	asmbl_16114	none	Trinity_GG_27764_c0_g1_i6,blat.proc3825172.chain_3724	2	STRG.19116.1,STRG.19116.2,blat.proc3825172.chain_3723,blat.proc3825172.chain_3725,blat.proc3825172.chain_3727	5
scaffold_15	alt_acceptor	15857173	15857174	+	asmbl_15822,asmbl_15825,asmbl_15828,asmbl_15829	none	STRG.18973.4,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i7,blat.proc3825172.chain_3568,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575,blat.proc3825172.chain_3577	7	blat.proc3825172.chain_3572,blat.proc3825172.chain_3573	2
scaffold_15	spliced_intron	12621910	12622004	+	asmbl_15588	none	blat.proc3825172.chain_3368	1	STRG.18717.2,Trinity_GG_27593_c1_g1_i5,blat.proc3825172.chain_3370	3
scaffold_1	spliced_intron	17729078	17729199	+	asmbl_2532	none	STRG.1245.2,blat.proc3825164.chain_1409	2	blat.proc3825164.chain_1408	1
scaffold_5	ends_in_intron	6607273	6607273	-	asmbl_44113	none	Trinity_GG_3406_c0_g1_i1,blat.proc3825150.chain_2266	2	STRG.6064.1	1
scaffold_13	alt_donor	10129346	10129347	+	asmbl_11232	none	STRG.16242.1,blat.proc3825172.chain_995	2	blat.proc3825172.chain_994	1
scaffold_2	ends_in_intron	15227584	15227584	+	asmbl_24989	none	Trinity_GG_18714_c0_g1_i2	1	Trinity_GG_18714_c0_g1_i1,blat.proc3825164.chain_2737	2
scaffold_14	skipped_exon	209003	210779	-	asmbl_12795	none	STRG.16713.2,Trinity_GG_9359_c0_g2_i5,blat.proc3825156.chain_1538	3	STRG.16713.1,Trinity_GG_9359_c0_g2_i2,blat.proc3825156.chain_1536	3
scaffold_12	starts_in_intron	14171833	14171833	+	asmbl_8066	none	Trinity_GG_25713_c0_g1_i9,blat.proc3825172.chain_5	2	STRG.15252.1,blat.proc3825172.chain_2,blat.proc3825172.chain_4,blat.proc3825172.chain_6	4
scaffold_22	alt_donor	10945269	10945270	-	asmbl_29632	none	blat.proc3825160.chain_2597	1	blat.proc3825160.chain_2600	1
scaffold_11	starts_in_intron	3767905	3767905	-	asmbl_6578	none	Trinity_GG_7568_c0_g1_i3,Trinity_GG_7568_c0_g1_i8	2	STRG.13508.1,STRG.13508.3,STRG.13508.4,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	5
scaffold_2	alt_acceptor	7119290	7119291	+	asmbl_24526	none	STRG.2045.2,Trinity_GG_18474_c0_g1_i2,blat.proc3825164.chain_2214	3	STRG.2045.1,STRG.2045.3,Trinity_GG_18474_c0_g1_i1,blat.proc3825164.chain_2213	4
scaffold_23	starts_in_intron	2633764	2633764	+	asmbl_31414	none	STRG.25731.4	1	STRG.25731.1,STRG.25731.2,STRG.25731.3	3
scaffold_20	retained_intron	7104772	7104894	-	asmbl_25876	none	STRG.23282.1,blat.proc3825160.chain_373,blat.proc3825160.chain_376	3	STRG.23282.3,blat.proc3825160.chain_374	2
scaffold_4	alt_donor	17709798	17709799	-	asmbl_43311	none	STRG.5367.2	1	STRG.5367.1,Trinity_GG_2977_c0_g2_i1,blat.proc3825150.chain_1519	3
scaffold_20	skipped_exon	1469616	1470058	-	asmbl_25571,asmbl_25572	none	STRG.22868.2,STRG.22868.4,blat.proc3825158.chain_3739	3	blat.proc3825158.chain_3736	1
scaffold_10	alternate_exon	1706427	1708095	-	asmbl_4074	none	STRG.12033.2	1	STRG.12033.1	1
scaffold_15	skipped_exon	9666417	9668414	-	asmbl_14393,asmbl_14394	none	STRG.18477.1,STRG.18477.2,blat.proc3825156.chain_3351	3	STRG.18477.3	1
scaffold_2	skipped_exon	14276152	14276549	+	asmbl_24899	none	STRG.2428.2	1	STRG.2428.1,blat.proc3825164.chain_2591,blat.proc3825164.chain_2597	3
scaffold_21	skipped_exon	11272094	11272979	-	asmbl_28112	none	blat.proc3825160.chain_1824,blat.proc3825160.chain_1825	2	STRG.24607.1,STRG.24607.2,blat.proc3825160.chain_1823,blat.proc3825160.chain_1827,blat.proc3825160.chain_1829	5
scaffold_2	retained_intron	7895023	7895182	+	asmbl_24593	none	Trinity_GG_18472_c0_g1_i8,blat.proc3825164.chain_2207	2	STRG.2085.1,STRG.2085.2,STRG.2085.3,blat.proc3825164.chain_2201,blat.proc3825164.chain_2202,blat.proc3825164.chain_2203,blat.proc3825164.chain_2205,blat.proc3825164.chain_2206,blat.proc3825164.chain_2208,blat.proc3825164.chain_2210,blat.proc3825164.chain_2211	11
scaffold_15	retained_intron	389143	389240	+	asmbl_14968,asmbl_14969	none	STRG.17895.1,blat.proc3825172.chain_2622,blat.proc3825172.chain_2623,blat.proc3825172.chain_2625	4	STRG.17895.2,blat.proc3825172.chain_2619,blat.proc3825172.chain_2620,blat.proc3825172.chain_2621	4
scaffold_6	spliced_intron	853752	853844	-	asmbl_48074,asmbl_48075,asmbl_48077	none	STRG.7151.1,STRG.7151.3,STRG.7151.4,blat.proc3825150.chain_3267	4	blat.proc3825150.chain_3268	1
scaffold_1	alt_acceptor	6920065	6920066	-	asmbl_404	none	STRG.486.1,blat.proc3825148.chain_432	2	blat.proc3825148.chain_430	1
scaffold_6	retained_intron	8164348	8164374	-	asmbl_48534	none	STRG.7697.2	1	STRG.7697.1	1
scaffold_56	alt_acceptor	7802	7803	-	asmbl_46567	none	STRG.30074.1,Trinity_GG_16874_c0_g1_i1	2	STRG.30074.2	1
scaffold_44	alternate_exon	28306	28402	-	asmbl_43714	none	STRG.30048.1	1	STRG.30048.2,STRG.30048.3,blat.proc3825162.chain_3218	3
scaffold_3	alternate_exon	6032281	6050805	-	asmbl_38879,asmbl_38880	none	STRG.3259.1,STRG.3259.3,blat.proc3825148.chain_3088	3	STRG.3259.2,blat.proc3825148.chain_3152	2
scaffold_1	retained_exon	11911794	11911928	+	asmbl_2166	none	Trinity_GG_17818_c0_g1_i2,blat.proc3825164.chain_980	2	Trinity_GG_17818_c0_g1_i1,blat.proc3825164.chain_979	2
scaffold_20	alternate_exon	4230034	4230376	+	asmbl_26566	none	STRG.23109.1,Trinity_GG_30057_c1_g1_i1,blat.proc3825176.chain_283	3	STRG.23109.3,blat.proc3825176.chain_284	2
scaffold_5	alt_acceptor	4755585	4755586	+	asmbl_45294,asmbl_45295	none	STRG.5935.1,blat.proc3825166.chain_2142,blat.proc3825166.chain_2143	3	Trinity_GG_20552_c0_g1_i1	1
scaffold_12	alternate_exon	1989475	1989538	-	asmbl_8317	none	blat.proc3825154.chain_2981	1	STRG.14488.1,blat.proc3825154.chain_2979,blat.proc3825154.chain_2980	3
scaffold_22	alt_donor	4240804	4240805	-	asmbl_29214,asmbl_29215	none	STRG.24845.2,Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065	3	blat.proc3825160.chain_2066	1
scaffold_5	spliced_intron	16648366	16648547	+	asmbl_46113,asmbl_46114,asmbl_46116	none	STRG.6855.1,STRG.6855.2,STRG.6855.3,blat.proc3825166.chain_3027,blat.proc3825166.chain_3029	5	Trinity_GG_21054_c0_g1_i1,blat.proc3825166.chain_3028	2
scaffold_21	alt_donor	2486908	2486909	+	asmbl_28393	none	STRG.23875.2	1	STRG.23875.1,blat.proc3825176.chain_1065	2
scaffold_13	retained_intron	8955354	8955451	+	asmbl_11165,asmbl_11166	none	blat.proc3825172.chain_867,blat.proc3825172.chain_868	2	STRG.16167.1,STRG.16167.2,STRG.16167.3,blat.proc3825172.chain_869,blat.proc3825172.chain_870,blat.proc3825172.chain_871	6
scaffold_18	alt_donor	1955804	1955805	+	asmbl_20394	none	STRG.21087.2,Trinity_GG_28911_c0_g1_i2,blat.proc3825174.chain_2011	3	Trinity_GG_28911_c0_g1_i1,blat.proc3825174.chain_2012	2
scaffold_27	alternate_exon	974848	977149	+	asmbl_35967	none	STRG.28595.4,Trinity_GG_33133_c1_g1_i1,blat.proc3825178.chain_1722	3	Trinity_GG_33133_c0_g2_i1,blat.proc3825178.chain_1721	2
scaffold_10	retained_intron	5010430	5010561	-	asmbl_4333	none	STRG.12326.1,blat.proc3825154.chain_850	2	blat.proc3825154.chain_848	1
scaffold_6	spliced_intron	11668222	11669586	+	asmbl_47355	none	STRG.7960.1,Trinity_GG_21670_c0_g1_i2,blat.proc3825168.chain_405	3	Trinity_GG_21670_c0_g1_i1,blat.proc3825168.chain_406	2
scaffold_16	alt_acceptor	10977216	10977217	-	asmbl_17320	none	STRG.19645.1,blat.proc3825158.chain_660	2	STRG.19645.2	1
scaffold_8	retained_intron	11111045	11111142	+	asmbl_53195	none	STRG.10324.2,blat.proc3825168.chain_2893	2	STRG.10324.3,blat.proc3825168.chain_2896	2
scaffold_2	alt_acceptor	15453316	15453317	+	asmbl_25037,asmbl_25038,asmbl_25042,asmbl_25043,asmbl_25044	none	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811,blat.proc3825164.chain_2812	7	blat.proc3825164.chain_2804,blat.proc3825164.chain_2808	2
scaffold_17	alternate_exon	1289897	1292490	-	asmbl_17683	none	blat.proc3825158.chain_972	1	STRG.19964.2	1
scaffold_22	alt_acceptor	11544061	11544062	+	asmbl_30408	none	STRG.25505.3	1	STRG.25505.1	1
scaffold_8	retained_intron	4852903	4853082	+	asmbl_52862	none	Trinity_GG_22856_c0_g1_i2,blat.proc3825168.chain_2527	2	STRG.9951.1,STRG.9951.2,Trinity_GG_22856_c0_g1_i1,blat.proc3825168.chain_2523,blat.proc3825168.chain_2524,blat.proc3825168.chain_2525,blat.proc3825168.chain_2528	7
scaffold_11	ends_in_intron	9810741	9810741	+	asmbl_5900	none	blat.proc3825170.chain_2501	1	STRG.13993.1,STRG.13993.2,blat.proc3825170.chain_2500	3
scaffold_646	retained_intron	4845	4952	-	asmbl_49492	none	STRG.30417.2,blat.proc3825162.chain_3525	2	STRG.30417.1,STRG.30417.3,blat.proc3825162.chain_3526,blat.proc3825162.chain_3527	4
scaffold_9	alt_donor	3374670	3374671	+	asmbl_53894	none	blat.proc3825168.chain_3419	1	blat.proc3825168.chain_3418	1
scaffold_3	retained_exon	5929029	5929153	-	asmbl_38872,asmbl_38875	none	STRG.3252.1,blat.proc3825148.chain_3097,blat.proc3825148.chain_3100	3	blat.proc3825148.chain_3098	1
scaffold_8	spliced_intron	16619457	16619609	-	asmbl_52432	none	STRG.10636.1,Trinity_GG_5912_c0_g1_i2,blat.proc3825152.chain_2888	3	Trinity_GG_5912_c0_g1_i1,blat.proc3825152.chain_2889	2
scaffold_16	spliced_intron	325094	325177	-	asmbl_16855,asmbl_16856,asmbl_16857,asmbl_16860,asmbl_16861	none	STRG.19029.1,STRG.19029.2,blat.proc3825158.chain_167,blat.proc3825158.chain_168,blat.proc3825158.chain_171,blat.proc3825158.chain_172	6	blat.proc3825158.chain_169,blat.proc3825158.chain_170	2
scaffold_14	alt_acceptor	7999487	7999488	+	asmbl_12181	none	STRG.17215.3	1	STRG.17215.1,STRG.17215.2,Trinity_GG_26782_c0_g1_i1,blat.proc3825172.chain_1971,blat.proc3825172.chain_1972	5
scaffold_15	spliced_intron	12026739	12026841	-	asmbl_14558	none	STRG.18643.1	1	Trinity_GG_10446_c0_g1_i1,blat.proc3825156.chain_3464	2
scaffold_24	retained_intron	3763914	3764002	-	asmbl_32850	none	Trinity_GG_14855_c0_g1_i2,blat.proc3825160.chain_3681	2	STRG.26558.1,Trinity_GG_14855_c0_g1_i1,blat.proc3825160.chain_3680	3
scaffold_20	alternate_exon	7067844	7071960	-	asmbl_25867	none	STRG.23276.1,blat.proc3825160.chain_314	2	STRG.23276.2,blat.proc3825160.chain_315	2
scaffold_6	ends_in_intron	570859	570859	+	asmbl_46664	none	blat.proc3825166.chain_3262	1	STRG.7117.1,blat.proc3825166.chain_3263	2
scaffold_6	spliced_intron	5644143	5644250	-	asmbl_48428	none	STRG.7526.1,blat.proc3825150.chain_3734,blat.proc3825150.chain_3735,blat.proc3825150.chain_3736	4	Trinity_GG_4277_c0_g1_i1,blat.proc3825150.chain_3733	2
scaffold_12	spliced_intron	10187010	10187126	-	asmbl_8731,asmbl_8732,asmbl_8733,asmbl_8734,asmbl_8735,asmbl_8736,asmbl_8737	none	STRG.14994.1,STRG.14994.2,STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516,blat.proc3825154.chain_3517,blat.proc3825154.chain_3518,blat.proc3825154.chain_3519,blat.proc3825154.chain_3520	10	blat.proc3825154.chain_3514	1
scaffold_3	alt_donor	16133663	16133664	-	asmbl_39484	none	STRG.3897.2	1	STRG.3897.1,blat.proc3825150.chain_75	2
scaffold_14	alternate_exon	408814	408900	-	asmbl_12832	none	STRG.16735.1	1	Trinity_GG_9366_c0_g1_i2,blat.proc3825156.chain_1555	2
scaffold_7	retained_exon	5483654	5483703	+	asmbl_49814	none	STRG.8877.2	1	STRG.8877.1,blat.proc3825168.chain_1357	2
scaffold_6	starts_in_intron	3302309	3302309	-	asmbl_48241	none	blat.proc3825150.chain_3469	1	STRG.7337.2,blat.proc3825150.chain_3470	2
scaffold_15	alt_acceptor	6889440	6889441	-	asmbl_14263	none	STRG.18301.3,blat.proc3825156.chain_3153	2	STRG.18301.1,STRG.18301.2,STRG.18301.4,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	9
scaffold_21	spliced_intron	10497854	10497950	-	asmbl_28047,asmbl_28050	none	STRG.24519.1,blat.proc3825160.chain_1741,blat.proc3825160.chain_1743,blat.proc3825160.chain_1745	4	STRG.24519.2,blat.proc3825160.chain_1740,blat.proc3825160.chain_1742	3
scaffold_19	alternate_exon	10222252	10222450	+	asmbl_21631,asmbl_21632	none	STRG.22402.3,blat.proc3825174.chain_3298	2	STRG.22402.1,blat.proc3825174.chain_3299	2
scaffold_12	retained_intron	4721064	4721689	-	asmbl_8434,asmbl_8437	none	STRG.14649.1,blat.proc3825154.chain_3100	2	STRG.14649.2,STRG.14649.3,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	5
scaffold_18	spliced_intron	9804399	9804418	-	asmbl_20092	none	STRG.21590.2	1	STRG.21590.1,STRG.21590.3,Trinity_GG_12073_c0_g1_i1,Trinity_GG_12073_c0_g1_i2,blat.proc3825158.chain_2507,blat.proc3825158.chain_2508	6
scaffold_13	alt_acceptor	2334831	2334832	+	asmbl_10599,asmbl_10605,asmbl_10608	none	STRG.15564.3,STRG.15564.5,blat.proc3825172.chain_224,blat.proc3825172.chain_230	4	STRG.15564.2,STRG.15564.4,STRG.15564.6,blat.proc3825172.chain_222	4
scaffold_26	spliced_intron	9514352	9514514	+	asmbl_35240	none	STRG.28502.2	1	blat.proc3825178.chain_1625	1
scaffold_13	ends_in_intron	11944183	11944183	-	asmbl_10112	none	STRG.16330.3	1	STRG.16330.1,STRG.16330.2,blat.proc3825156.chain_1200	3
scaffold_8	retained_intron	9872480	9872652	-	asmbl_52060	none	blat.proc3825152.chain_2491	1	STRG.10234.2	1
scaffold_4	spliced_intron	8427515	8427786	-	asmbl_42773,asmbl_42775	none	STRG.4673.2,Trinity_GG_2573_c0_g1_i2,blat.proc3825150.chain_829,blat.proc3825150.chain_830	4	STRG.4673.1,blat.proc3825150.chain_828	2
scaffold_3	skipped_exon	13700565	13703526	+	asmbl_40452,asmbl_40454	none	STRG.3717.2,blat.proc3825166.chain_218	2	STRG.3717.1,blat.proc3825166.chain_222	2
scaffold_2	retained_intron	13445747	13445853	-	asmbl_23518	none	blat.proc3825148.chain_2361	1	STRG.2363.1,blat.proc3825148.chain_2360,blat.proc3825148.chain_2363	3
scaffold_16	alternate_exon	13213506	13213568	+	asmbl_16656	none	STRG.19781.3	1	STRG.19781.1,STRG.19781.2,blat.proc3825174.chain_693,blat.proc3825174.chain_695	4
scaffold_5	skipped_exon	15547083	15548192	-	asmbl_44696,asmbl_44698	none	STRG.6747.1,STRG.6747.2,blat.proc3825150.chain_2941	3	STRG.6747.3	1
scaffold_11	retained_exon	5125187	5125242	-	asmbl_6655	none	STRG.13605.2,blat.proc3825154.chain_2107	2	STRG.13605.3	1
scaffold_1	alt_donor	11269937	11269938	+	asmbl_2092	none	STRG.746.2	1	STRG.746.1,Trinity_GG_17778_c0_g1_i1,blat.proc3825164.chain_886	3
scaffold_12	alternate_exon	10533666	10536248	+	asmbl_7925	none	STRG.15021.1,Trinity_GG_25582_c0_g1_i2,blat.proc3825170.chain_3526	3	Trinity_GG_25582_c0_g1_i1,blat.proc3825170.chain_3525	2
scaffold_18	alt_acceptor	4769105	4769106	+	asmbl_20555	none	STRG.21273.4	1	STRG.21273.2	1
scaffold_7	alt_acceptor	18400145	18400146	+	asmbl_50520,asmbl_50522	none	STRG.9669.1,STRG.9669.3,blat.proc3825168.chain_2179,blat.proc3825168.chain_2182	4	STRG.9669.2,blat.proc3825168.chain_2181	2
scaffold_24	alt_donor	3655857	3655858	+	asmbl_32149,asmbl_32154	none	STRG.26550.2,STRG.26550.6,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463	4	STRG.26550.1,STRG.26550.3,STRG.26550.5,Trinity_GG_31970_c0_g1_i5,blat.proc3825176.chain_3467,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469,blat.proc3825176.chain_3470	8
scaffold_14	alt_acceptor	1590407	1590408	-	asmbl_12900	none	STRG.16799.3	1	STRG.16799.1,STRG.16799.2,STRG.16799.4,blat.proc3825156.chain_1564,blat.proc3825156.chain_1565,blat.proc3825156.chain_1566	6
scaffold_24	spliced_intron	8737754	8737865	-	asmbl_33097,asmbl_33100,asmbl_33101	none	STRG.26890.1,blat.proc3825162.chain_182,blat.proc3825162.chain_183,blat.proc3825162.chain_184	4	blat.proc3825162.chain_181	1
scaffold_16	ends_in_intron	7702283	7702283	-	asmbl_17190	none	Trinity_GG_10894_c1_g1_i1,blat.proc3825158.chain_549	2	STRG.19419.1,blat.proc3825158.chain_547,blat.proc3825158.chain_548	3
scaffold_1	ends_in_intron	5964257	5964257	+	asmbl_1809	none	blat.proc3825164.chain_541	1	STRG.400.1,STRG.400.2,blat.proc3825164.chain_540	3
scaffold_15	ends_in_intron	2421833	2421833	-	asmbl_14000	none	blat.proc3825156.chain_2824	1	Trinity_GG_10120_c1_g1_i1,Trinity_GG_10120_c1_g1_i2,blat.proc3825156.chain_2822,blat.proc3825156.chain_2823	4
scaffold_5	alt_donor	3592651	3592652	-	asmbl_43923,asmbl_43925,asmbl_43926	none	STRG.5831.2,STRG.5831.4,STRG.5831.5,blat.proc3825150.chain_2046	4	STRG.5831.3,blat.proc3825150.chain_2044	2
scaffold_2	starts_in_intron	8055809	8055809	-	asmbl_23305	none	STRG.2094.4,blat.proc3825148.chain_2118	2	STRG.2094.3,Trinity_GG_1165_c1_g1_i1	2
scaffold_26	alt_donor	2966247	2966248	-	asmbl_35458,asmbl_35459,asmbl_35461,asmbl_35463	none	STRG.27989.1,STRG.27989.4,STRG.27989.5,Trinity_GG_15696_c1_g1_i1,blat.proc3825162.chain_1300,blat.proc3825162.chain_1301,blat.proc3825162.chain_1302	7	STRG.27989.2,STRG.27989.3,blat.proc3825162.chain_1299	3
scaffold_12	alt_donor	9972985	9972986	-	asmbl_8703	none	STRG.14969.1,blat.proc3825154.chain_3477,blat.proc3825154.chain_3478	3	STRG.14969.2,STRG.14969.3	2
scaffold_6	ends_in_intron	1747754	1747754	+	asmbl_46736	none	blat.proc3825166.chain_3351	1	STRG.7231.4,STRG.7231.5,blat.proc3825166.chain_3352	3
scaffold_13	alt_acceptor	5208648	5208649	+	asmbl_10830	none	STRG.15826.1,Trinity_GG_26004_c0_g1_i1,blat.proc3825172.chain_551	3	STRG.15826.2	1
scaffold_14	retained_intron	11685485	11685674	-	asmbl_13524	none	Trinity_GG_9810_c1_g1_i1,blat.proc3825156.chain_2317	2	STRG.17516.1,STRG.17516.2,STRG.17516.3,blat.proc3825156.chain_2313,blat.proc3825156.chain_2314,blat.proc3825156.chain_2316	6
scaffold_9	alternate_exon	2508532	2508638	+	asmbl_53842,asmbl_53843	none	STRG.10899.1,STRG.10899.3	2	STRG.10899.2,blat.proc3825168.chain_3401	2
scaffold_10	retained_intron	14680476	14680668	+	asmbl_3646	none	STRG.13012.1,Trinity_GG_24476_c0_g1_i2,Trinity_GG_24476_c0_g1_i3,blat.proc3825170.chain_1612,blat.proc3825170.chain_1614	5	Trinity_GG_24476_c0_g1_i1,blat.proc3825170.chain_1613	2
scaffold_10	spliced_intron	9043353	9045014	-	asmbl_4658	none	STRG.12654.1,blat.proc3825154.chain_1241,blat.proc3825154.chain_1242,blat.proc3825154.chain_1243	4	STRG.12654.2,Trinity_GG_7062_c0_g1_i4,blat.proc3825154.chain_1239	3
scaffold_9	alt_donor	12012157	12012158	+	asmbl_54406	none	STRG.11527.1	1	STRG.11527.2	1
scaffold_12	retained_intron	10187905	10188527	-	asmbl_8736,asmbl_8737	none	blat.proc3825154.chain_3518,blat.proc3825154.chain_3519	2	STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3520	3
scaffold_15	alternate_exon	382124	382156	+	asmbl_14965	none	STRG.17892.3,blat.proc3825172.chain_2610	2	STRG.17892.1	1
scaffold_2	spliced_intron	7220195	7220310	+	asmbl_24544,asmbl_24550	none	STRG.2054.1,Trinity_GG_18495_c0_g1_i2,blat.proc3825164.chain_2267	3	STRG.2054.5,STRG.2054.6,Trinity_GG_18495_c0_g1_i12,Trinity_GG_18495_c0_g1_i13,blat.proc3825164.chain_2269,blat.proc3825164.chain_2270,blat.proc3825164.chain_2274	7
scaffold_17	retained_exon	12221530	12222989	-	asmbl_18320	none	STRG.20758.1,blat.proc3825158.chain_1699	2	STRG.20758.2	1
scaffold_20	ends_in_intron	9963595	9963595	-	asmbl_26065,asmbl_26066	none	Trinity_GG_13133_c0_g1_i3,Trinity_GG_13133_c0_g1_i4,blat.proc3825160.chain_626,blat.proc3825160.chain_628	4	STRG.23540.2,STRG.23540.3	2
scaffold_22	alternate_exon	6946826	6946899	+	asmbl_30138	none	STRG.25013.1,Trinity_GG_31151_c0_g1_i1,blat.proc3825176.chain_2141	3	STRG.25013.3	1
scaffold_17	alternate_exon	2630320	2630364	+	asmbl_18676	none	blat.proc3825174.chain_928	1	STRG.20060.1,STRG.20060.2,STRG.20060.3,STRG.20060.4,Trinity_GG_28292_c0_g1_i1,Trinity_GG_28292_c0_g1_i3,blat.proc3825174.chain_926,blat.proc3825174.chain_929	8
scaffold_10	alternate_exon	3311671	3315585	-	asmbl_4186	none	STRG.12164.2,Trinity_GG_6749_c0_g1_i1,blat.proc3825154.chain_671,blat.proc3825154.chain_694	4	Trinity_GG_6763_c0_g1_i1,blat.proc3825154.chain_695	2
scaffold_17	spliced_intron	6684218	6684381	+	asmbl_18866	none	STRG.20322.1,blat.proc3825174.chain_1159	2	STRG.20322.2,blat.proc3825174.chain_1156	2
scaffold_1	alternate_exon	12750488	12750834	-	asmbl_751	none	STRG.895.1,blat.proc3825148.chain_850	2	STRG.895.5,Trinity_GG_447_c0_g1_i3,blat.proc3825148.chain_852	3
scaffold_1	alt_acceptor	1042740	1042741	+	asmbl_1453	none	STRG.62.4	1	STRG.62.2,blat.proc3825164.chain_92	2
scaffold_13	spliced_intron	7109446	7110796	+	asmbl_11013	none	STRG.16010.2	1	STRG.16010.1,Trinity_GG_26113_c0_g1_i5,Trinity_GG_26113_c0_g1_i9,blat.proc3825172.chain_778	4
scaffold_9	alt_donor	7032375	7032376	+	asmbl_54124	none	STRG.11219.1,blat.proc3825170.chain_9	2	blat.proc3825170.chain_8	1
scaffold_4	alt_donor	19337827	19337828	-	asmbl_43426	none	STRG.5515.2	1	STRG.5515.1,blat.proc3825150.chain_1640	2
scaffold_11	spliced_intron	932741	932796	+	asmbl_5316	none	STRG.13291.2	1	STRG.13291.1,blat.proc3825170.chain_1780	2
scaffold_3	alt_donor	3251202	3251203	+	asmbl_39938,asmbl_39946,asmbl_39948	none	STRG.3072.4,STRG.3072.5,STRG.3072.6	3	STRG.3072.2	1
scaffold_22	retained_intron	11133580	11133834	-	asmbl_29645	none	STRG.25445.2	1	blat.proc3825160.chain_2604	1
scaffold_14	alternate_exon	9287279	9293843	-	asmbl_13370,asmbl_13375,asmbl_13376,asmbl_13377	none	STRG.17341.1,STRG.17341.2,STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2172	5	blat.proc3825156.chain_2166	1
scaffold_15	alt_acceptor	4967376	4967377	-	asmbl_14175	none	STRG.18209.5	1	STRG.18209.2,Trinity_GG_10249_c0_g1_i9,blat.proc3825156.chain_3060	3
scaffold_1	spliced_intron	12754530	12756067	+	asmbl_2253	none	STRG.896.2,blat.proc3825164.chain_1095	2	STRG.896.1,Trinity_GG_17878_c0_g1_i2,blat.proc3825164.chain_1094	3
scaffold_9	ends_in_intron	3846775	3846775	-	asmbl_54945	none	Trinity_GG_6096_c0_g1_i1	1	STRG.11008.1,blat.proc3825152.chain_3252	2
scaffold_18	spliced_intron	8911050	8911533	-	asmbl_20042,asmbl_20044,asmbl_20045,asmbl_20046,asmbl_20047,asmbl_20048,asmbl_20050,asmbl_20051,asmbl_20053	none	STRG.21558.1,STRG.21558.3,STRG.21558.4,STRG.21558.5,STRG.21558.6,STRG.21558.7,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2447,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451,blat.proc3825158.chain_2453	12	STRG.21558.2	1
scaffold_28	retained_exon	6546833	6546895	-	asmbl_38353	none	STRG.29753.4	1	STRG.29753.3	1
scaffold_4	retained_intron	232495	232641	-	asmbl_42315	none	STRG.4119.1,Trinity_GG_2291_c0_g1_i1,blat.proc3825150.chain_339	3	STRG.4119.2	1
scaffold_2	alt_acceptor	16285912	16285913	+	asmbl_25109,asmbl_25110	none	STRG.2562.2,blat.proc3825164.chain_2841,blat.proc3825164.chain_2843	3	STRG.2562.1,blat.proc3825164.chain_2842	2
scaffold_28	alternate_exon	5232583	5232614	-	asmbl_38266	none	Trinity_GG_16598_c0_g1_i3,blat.proc3825162.chain_2784	2	STRG.29676.1,STRG.29676.2,Trinity_GG_16598_c0_g1_i11,blat.proc3825162.chain_2780,blat.proc3825162.chain_2782,blat.proc3825162.chain_2783,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	8
scaffold_21	retained_intron	7009393	7009561	-	asmbl_27776,asmbl_27777	none	blat.proc3825160.chain_1394,blat.proc3825160.chain_1395	2	STRG.24233.1,STRG.24233.2,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393	6
scaffold_4	alt_acceptor	12793645	12793646	+	asmbl_41751	none	Trinity_GG_20068_c0_g1_i1,blat.proc3825166.chain_1370	2	STRG.4935.1,STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365,blat.proc3825166.chain_1366,blat.proc3825166.chain_1368,blat.proc3825166.chain_1369	7
scaffold_13	alt_acceptor	7443188	7443189	+	asmbl_11051	none	STRG.16040.1	1	STRG.16040.2,blat.proc3825172.chain_751,blat.proc3825172.chain_752	3
scaffold_6	alternate_exon	18047598	18047903	-	asmbl_49224	none	STRG.8487.1,blat.proc3825152.chain_920	2	STRG.8487.3,STRG.8487.4,blat.proc3825152.chain_918	3
scaffold_5	spliced_intron	5738215	5738534	+	asmbl_45361,asmbl_45363	none	STRG.5992.4,STRG.5992.6,blat.proc3825166.chain_2131	3	STRG.5992.1,STRG.5992.2,blat.proc3825166.chain_2134	3
scaffold_16	ends_in_intron	7241238	7241238	-	asmbl_17174	none	STRG.19399.6	1	STRG.19399.3	1
scaffold_13	alt_acceptor	11271465	11271466	-	asmbl_10076	none	STRG.16288.1,blat.proc3825156.chain_1099	2	STRG.16288.2	1
scaffold_1	alternate_exon	14359034	14363016	-	asmbl_909	none	STRG.1037.3	1	STRG.1037.4,blat.proc3825148.chain_1030	2
scaffold_23	skipped_exon	7277470	7278108	-	asmbl_31021	none	STRG.26052.4	1	STRG.26052.1,STRG.26052.2,STRG.26052.3,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	5
scaffold_3	alt_donor	8091820	8091821	+	asmbl_40196	none	STRG.3388.1	1	STRG.3388.2,Trinity_GG_19234_c0_g1_i1,blat.proc3825164.chain_3654	3
scaffold_7	retained_intron	4915842	4915925	+	asmbl_49759,asmbl_49762	none	STRG.8836.1,STRG.8836.3,blat.proc3825168.chain_1316	3	STRG.8836.2	1
scaffold_8	alt_donor	9656020	9656021	+	asmbl_53094,asmbl_53096	none	STRG.10219.2,blat.proc3825168.chain_2808	2	STRG.10219.1,STRG.10219.3,STRG.10219.5,blat.proc3825168.chain_2809,blat.proc3825168.chain_2810	5
scaffold_5	spliced_intron	7320452	7320503	+	asmbl_45490,asmbl_45492	none	STRG.6129.1,blat.proc3825166.chain_2350	2	Trinity_GG_20663_c0_g2_i1	1
scaffold_17	alternate_exon	787989	788272	+	asmbl_18575	none	blat.proc3825174.chain_823	1	STRG.19934.1	1
scaffold_11	spliced_intron	8735988	8736072	+	asmbl_5838	none	blat.proc3825170.chain_2452	1	STRG.13894.1	1
scaffold_1	spliced_intron	21665391	21665422	-	asmbl_1215	none	STRG.1459.2	1	STRG.1459.1,Trinity_GG_782_c0_g1_i1,blat.proc3825148.chain_1435	3
scaffold_9	starts_in_intron	11542666	11542666	+	asmbl_54356	none	Trinity_GG_23714_c0_g1_i1,blat.proc3825170.chain_295	2	STRG.11471.1,STRG.11471.2,STRG.11471.3,Trinity_GG_23714_c0_g1_i2,blat.proc3825170.chain_296	5
scaffold_27	starts_in_intron	4327782	4327782	+	asmbl_36271	none	STRG.28894.3,Trinity_GG_33257_c0_g1_i2,blat.proc3825178.chain_1981	3	STRG.28894.1,Trinity_GG_33257_c0_g1_i1,blat.proc3825178.chain_1980	3
scaffold_614	ends_in_intron	4202	4202	+	asmbl_49467	none	blat.proc3825178.chain_3477	1	STRG.30405.1,blat.proc3825178.chain_3475,blat.proc3825178.chain_3476	3
scaffold_2	alt_acceptor	16370315	16370316	+	asmbl_25127	none	STRG.2571.1	1	blat.proc3825164.chain_2856	1
scaffold_13	retained_intron	14174926	14175940	+	asmbl_11431,asmbl_11433	none	STRG.16460.4,Trinity_GG_26388_c0_g1_i1,Trinity_GG_26388_c0_g1_i6,Trinity_GG_26388_c0_g1_i8,Trinity_GG_26388_c0_g1_i9,blat.proc3825172.chain_1264,blat.proc3825172.chain_1265,blat.proc3825172.chain_1267,blat.proc3825172.chain_1268	9	Trinity_GG_26388_c0_g1_i2,blat.proc3825172.chain_1270	2
scaffold_16	alt_donor	3577193	3577194	-	asmbl_16992	none	STRG.19176.2	1	STRG.19176.1,blat.proc3825158.chain_265	2
scaffold_12	alternate_exon	11209285	11209366	-	asmbl_8791	none	STRG.15065.2	1	STRG.15065.1	1
scaffold_7	ends_in_intron	8173173	8173173	+	asmbl_49961	none	blat.proc3825168.chain_1532	1	STRG.9049.2,blat.proc3825168.chain_1535	2
scaffold_7	ends_in_intron	12455633	12455633	-	asmbl_51230	none	Trinity_GG_5252_c0_g3_i1,blat.proc3825152.chain_1696	2	STRG.9354.1,STRG.9354.2,STRG.9354.3,STRG.9354.4	4
scaffold_12	alt_acceptor	12306105	12306106	+	asmbl_7986	none	STRG.15133.2	1	STRG.15133.1	1
scaffold_19	starts_in_intron	13005624	13005624	+	asmbl_21841,asmbl_21842,asmbl_21843	none	Trinity_GG_29821_c0_g1_i11,Trinity_GG_29821_c0_g1_i12,Trinity_GG_29821_c0_g1_i6,blat.proc3825174.chain_3647,blat.proc3825174.chain_3649,blat.proc3825174.chain_3650	6	STRG.22623.1,STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i10,Trinity_GG_29821_c0_g1_i13,Trinity_GG_29821_c0_g1_i5,blat.proc3825174.chain_3643,blat.proc3825174.chain_3645,blat.proc3825174.chain_3646,blat.proc3825174.chain_3651	10
scaffold_16	starts_in_intron	7887872	7887872	-	asmbl_17203	none	Trinity_GG_10908_c0_g1_i1,blat.proc3825158.chain_570	2	STRG.19432.1,blat.proc3825158.chain_569	2
scaffold_1352	retained_intron	1914	2398	+	asmbl_11723	none	STRG.30593.2	1	STRG.30593.1	1
scaffold_8	starts_in_intron	4238370	4238370	-	asmbl_51768	none	blat.proc3825152.chain_2099	1	STRG.9906.1,blat.proc3825152.chain_2100,blat.proc3825152.chain_2101,blat.proc3825152.chain_2102,blat.proc3825152.chain_2104	5
scaffold_15	spliced_intron	9313817	9314020	+	asmbl_15386	none	STRG.18465.1,blat.proc3825172.chain_3145	2	blat.proc3825172.chain_3146	1
scaffold_6	starts_in_intron	6952735	6952735	+	asmbl_47032	none	STRG.7605.2	1	STRG.7605.1,blat.proc3825168.chain_48,blat.proc3825168.chain_50	3
scaffold_6	alt_donor	13060353	13060354	-	asmbl_48873	none	STRG.8063.4	1	STRG.8063.1,STRG.8063.2,blat.proc3825152.chain_455	3
scaffold_5	alt_acceptor	6052725	6052726	+	asmbl_45396	none	blat.proc3825166.chain_2254	1	STRG.6025.1,blat.proc3825166.chain_2253	2
scaffold_12	alt_acceptor	977197	977198	-	asmbl_8285,asmbl_8286	none	STRG.14442.1,STRG.14442.4,blat.proc3825154.chain_2958	3	STRG.14442.3,blat.proc3825154.chain_2956	2
scaffold_21	skipped_exon	1679907	1680931	+	asmbl_28354	none	STRG.23821.2	1	STRG.23821.1,Trinity_GG_30517_c0_g1_i1,blat.proc3825176.chain_1042	3
scaffold_19	retained_intron	13192750	13192898	-	asmbl_22618	none	Trinity_GG_12588_c1_g1_i9,blat.proc3825158.chain_3437	2	STRG.22653.1,Trinity_GG_12588_c1_g1_i6,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3431,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3436	8
scaffold_3	alt_acceptor	14016922	14016923	+	asmbl_40494	none	STRG.3747.1,Trinity_GG_19407_c0_g1_i2,blat.proc3825166.chain_234	3	STRG.3747.2,Trinity_GG_19407_c0_g1_i1,blat.proc3825166.chain_235	3
scaffold_23	starts_in_intron	1417282	1417282	-	asmbl_30645	none	blat.proc3825160.chain_2770	1	STRG.25617.1	1
scaffold_13	spliced_intron	6397233	6397368	+	asmbl_10923,asmbl_10925,asmbl_10926,asmbl_10930	none	STRG.15929.2,STRG.15929.3,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_654,blat.proc3825172.chain_655	8	Trinity_GG_26055_c0_g1_i2,blat.proc3825172.chain_653	2
scaffold_7	alt_donor	10282895	10282896	+	asmbl_50105	none	Trinity_GG_22418_c0_g2_i2,blat.proc3825168.chain_1707,blat.proc3825168.chain_1710	3	STRG.9205.1,blat.proc3825168.chain_1708	2
scaffold_25	spliced_intron	5158232	5158408	-	asmbl_34249	none	STRG.27443.3	1	blat.proc3825162.chain_805	1
scaffold_24	alt_acceptor	10089397	10089398	+	asmbl_32539	none	STRG.26971.2	1	blat.proc3825162.chain_331	1
scaffold_15	retained_exon	3899298	3899355	+	asmbl_15111	none	STRG.18143.2,Trinity_GG_27258_c0_g1_i1,blat.proc3825172.chain_2799	3	STRG.18143.1	1
scaffold_5	skipped_exon	15016107	15017415	+	asmbl_45974	none	STRG.6692.2,Trinity_GG_20952_c0_g1_i2	2	STRG.6692.1,Trinity_GG_20952_c0_g1_i1	2
scaffold_9	retained_intron	10918975	10919509	+	asmbl_54311,asmbl_54312	none	blat.proc3825170.chain_169,blat.proc3825170.chain_170	2	STRG.11408.1,STRG.11408.2,blat.proc3825170.chain_168,blat.proc3825170.chain_171	4
scaffold_18	starts_in_intron	8371278	8371278	-	asmbl_20003	none	blat.proc3825158.chain_2433	1	STRG.21509.1,STRG.21509.2,STRG.21509.3,blat.proc3825158.chain_2435	4
scaffold_12	retained_intron	4787739	4787935	-	asmbl_8446,asmbl_8453	none	STRG.14660.6,blat.proc3825154.chain_3148	2	STRG.14660.3,STRG.14660.4,blat.proc3825154.chain_3147,blat.proc3825154.chain_3149,blat.proc3825154.chain_3153	5
scaffold_5	spliced_intron	5061484	5061828	+	asmbl_45340,asmbl_45341,asmbl_45342	none	STRG.5963.2,STRG.5963.3,STRG.5963.4,blat.proc3825166.chain_2192	4	STRG.5963.1,Trinity_GG_20579_c0_g1_i2,Trinity_GG_20579_c0_g1_i3,blat.proc3825166.chain_2190,blat.proc3825166.chain_2191	5
scaffold_18	alternate_exon	10930652	10931933	-	asmbl_20119	none	STRG.21658.1,blat.proc3825158.chain_2513	2	STRG.21658.2	1
scaffold_1	retained_intron	849299	849972	+	asmbl_1421	none	Trinity_GG_17343_c0_g1_i4,blat.proc3825164.chain_128	2	STRG.42.1,Trinity_GG_17343_c0_g1_i2,blat.proc3825164.chain_125	3
scaffold_6	starts_in_intron	3385730	3385730	-	asmbl_48257	none	blat.proc3825150.chain_3477	1	STRG.7350.1,STRG.7350.2,blat.proc3825150.chain_3478,blat.proc3825150.chain_3479,blat.proc3825150.chain_3481	5
scaffold_4	retained_intron	8426956	8427185	-	asmbl_42772	none	STRG.4673.1,blat.proc3825150.chain_828	2	STRG.4673.2,blat.proc3825150.chain_830	2
scaffold_24	alt_acceptor	7204226	7204227	+	asmbl_32378,asmbl_32379	none	STRG.26769.1,STRG.26769.2	2	STRG.26769.3	1
scaffold_3	alt_acceptor	8255871	8255872	+	asmbl_40206,asmbl_40208	none	STRG.3402.1,Trinity_GG_19231_c0_g1_i1,Trinity_GG_19231_c0_g1_i2,blat.proc3825164.chain_3649,blat.proc3825164.chain_3650	5	STRG.3402.2	1
scaffold_8	retained_intron	9465823	9465961	-	asmbl_52038,asmbl_52040	none	Trinity_GG_5708_c0_g1_i2,blat.proc3825152.chain_2502	2	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5
scaffold_1	spliced_intron	14190668	14191031	-	asmbl_866	none	STRG.1005.1,blat.proc3825148.chain_969	2	blat.proc3825148.chain_968,blat.proc3825148.chain_971	2
scaffold_3	skipped_exon	6189043	6190087	-	asmbl_38908,asmbl_38917	none	STRG.3266.2,blat.proc3825148.chain_3123,blat.proc3825148.chain_3125	3	blat.proc3825148.chain_3124	1
scaffold_20	alt_acceptor	1952437	1952438	-	asmbl_25627	none	blat.proc3825160.chain_32	1	STRG.22935.1	1
scaffold_28	ends_in_intron	6490236	6490236	-	asmbl_38343	none	Trinity_GG_16686_c0_g1_i1,blat.proc3825162.chain_2928	2	STRG.29751.1,blat.proc3825162.chain_2930	2
scaffold_1	spliced_intron	9163929	9164016	-	asmbl_515,asmbl_516,asmbl_517	none	STRG.612.1,blat.proc3825148.chain_612,blat.proc3825148.chain_613	3	blat.proc3825148.chain_614	1
scaffold_1	starts_in_intron	12462722	12462722	-	asmbl_723	none	blat.proc3825148.chain_772	1	STRG.867.1,STRG.867.2,STRG.867.3,STRG.867.5	4
scaffold_3	alt_donor	11977944	11977945	+	asmbl_40385	none	STRG.3620.3	1	STRG.3620.1,STRG.3620.2,Trinity_GG_19308_c0_g1_i1,Trinity_GG_19308_c0_g1_i2,blat.proc3825166.chain_49,blat.proc3825166.chain_50	6
scaffold_18	alternate_exon	10414060	10414148	-	asmbl_20112	none	STRG.21642.2,blat.proc3825158.chain_2543	2	STRG.21642.1,blat.proc3825158.chain_2544	2
scaffold_17	skipped_exon	2355039	2357644	+	asmbl_18643	none	blat.proc3825174.chain_909	1	STRG.20030.1,STRG.20030.2,STRG.20030.4,STRG.20030.5,STRG.20030.6,STRG.20030.7,blat.proc3825174.chain_907	7
scaffold_18	starts_in_intron	3780011	3780011	+	asmbl_20477	none	blat.proc3825174.chain_2065	1	STRG.21191.1,blat.proc3825174.chain_2064	2
scaffold_13	skipped_exon	15636177	15637930	+	asmbl_11521	none	STRG.16607.3	1	STRG.16607.2	1
scaffold_3	ends_in_intron	6167164	6167164	-	asmbl_38905	none	Trinity_GG_1748_c1_g1_i5,blat.proc3825148.chain_3077	2	STRG.3284.1,STRG.3284.2,STRG.3284.3,blat.proc3825148.chain_3074,blat.proc3825148.chain_3075,blat.proc3825148.chain_3076	6
scaffold_14	alt_acceptor	1132381	1132382	-	asmbl_12862	none	STRG.16777.1,Trinity_GG_9403_c0_g1_i3,blat.proc3825156.chain_1610	3	STRG.16777.2,Trinity_GG_9403_c0_g1_i2,blat.proc3825156.chain_1608	3
scaffold_6	starts_in_intron	17883544	17883544	-	asmbl_49214	none	blat.proc3825152.chain_879	1	STRG.8481.1,STRG.8481.3,blat.proc3825152.chain_880	3
scaffold_2	alternate_exon	948714	953525	+	asmbl_24166	none	STRG.1574.4	1	STRG.1574.1,STRG.1574.2,STRG.1574.3	3
scaffold_9	retained_intron	9596820	9596951	-	asmbl_55208,asmbl_55209	none	STRG.11329.1,STRG.11329.2,blat.proc3825152.chain_3513,blat.proc3825152.chain_3514	4	STRG.11329.3	1
scaffold_1	alternate_exon	12940583	12940661	-	asmbl_779	none	STRG.929.2,blat.proc3825148.chain_895	2	STRG.929.3,STRG.929.4,blat.proc3825148.chain_894	3
scaffold_11	skipped_exon	2845737	2846051	-	asmbl_6518	none	STRG.13429.2,Trinity_GG_7534_c0_g1_i2,blat.proc3825154.chain_2023	3	STRG.13429.1,Trinity_GG_7534_c0_g1_i1,blat.proc3825154.chain_2022	3
scaffold_20	alternate_exon	427704	428414	+	asmbl_26350	none	STRG.22745.5,blat.proc3825174.chain_3744	2	STRG.22745.2,STRG.22745.4	2
scaffold_24	spliced_intron	2514768	2515066	+	asmbl_32103,asmbl_32104	none	STRG.26469.1,STRG.26469.2,blat.proc3825176.chain_3422	3	STRG.26469.3,blat.proc3825176.chain_3421	2
scaffold_5	spliced_intron	3630484	3630505	+	asmbl_45229,asmbl_45230	none	STRG.5836.1,STRG.5836.2	2	Trinity_GG_20515_c0_g1_i1	1
scaffold_2	spliced_intron	7924499	7924931	-	asmbl_23295,asmbl_23296,asmbl_23298	none	STRG.2089.1,blat.proc3825148.chain_2075,blat.proc3825148.chain_2077,blat.proc3825148.chain_2078	4	blat.proc3825148.chain_2079	1
scaffold_19	retained_intron	12491455	12492121	+	asmbl_21814	none	STRG.22590.2	1	STRG.22590.4,blat.proc3825174.chain_3625	2
scaffold_14	alternate_exon	1377306	1377451	-	asmbl_12879,asmbl_12880	none	blat.proc3825156.chain_1623,blat.proc3825156.chain_1626	2	STRG.16791.1,STRG.16791.2,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625	4
scaffold_28	starts_in_intron	300167	300167	+	asmbl_37273,asmbl_37274,asmbl_37275	none	STRG.29264.2,blat.proc3825178.chain_2506,blat.proc3825178.chain_2508	3	STRG.29264.1,blat.proc3825178.chain_2509	2
scaffold_10	alt_acceptor	3046751	3046752	-	asmbl_4148	none	STRG.12120.1,blat.proc3825154.chain_596	2	STRG.12120.2,blat.proc3825154.chain_595	2
scaffold_20	starts_in_intron	8432566	8432566	+	asmbl_26778	none	blat.proc3825176.chain_536	1	STRG.23391.1,STRG.23391.2,blat.proc3825176.chain_535,blat.proc3825176.chain_537	4
scaffold_10	alternate_exon	12798393	12798453	-	asmbl_4827	none	STRG.12868.3	1	STRG.12868.2,blat.proc3825154.chain_1466	2
scaffold_19	spliced_intron	12105421	12105533	+	asmbl_21741	none	STRG.22538.1,blat.proc3825174.chain_3495	2	blat.proc3825174.chain_3496	1
scaffold_4	ends_in_intron	10447379	10447379	-	asmbl_42854	none	blat.proc3825150.chain_913	1	STRG.4796.1,STRG.4796.2,blat.proc3825150.chain_912,blat.proc3825150.chain_914,blat.proc3825150.chain_915,blat.proc3825150.chain_916,blat.proc3825150.chain_917	7
scaffold_21	ends_in_intron	3143948	3143948	+	asmbl_28455	none	blat.proc3825176.chain_1167	1	STRG.23944.1,Trinity_GG_30582_c0_g1_i3,blat.proc3825176.chain_1165,blat.proc3825176.chain_1166	4
scaffold_7	retained_intron	8659761	8660031	-	asmbl_51026,asmbl_51027	none	blat.proc3825152.chain_1497,blat.proc3825152.chain_1498	2	STRG.9099.1,blat.proc3825152.chain_1496,blat.proc3825152.chain_1499	3
scaffold_3	starts_in_intron	1554039	1554039	-	asmbl_38722	none	STRG.2986.3	1	STRG.2986.1,STRG.2986.2,blat.proc3825148.chain_2849,blat.proc3825148.chain_2852	4
scaffold_26	alt_donor	9089275	9089276	-	asmbl_35769,asmbl_35770	none	STRG.28474.2,blat.proc3825162.chain_1693	2	STRG.28474.1,blat.proc3825162.chain_1694	2
scaffold_21	spliced_intron	406429	406790	-	asmbl_27310,asmbl_27311,asmbl_27312,asmbl_27313,asmbl_27314	none	STRG.23739.1,Trinity_GG_13230_c0_g1_i1,Trinity_GG_13230_c0_g1_i3,Trinity_GG_13230_c0_g1_i4,Trinity_GG_13230_c0_g1_i7,Trinity_GG_13230_c0_g1_i8,blat.proc3825160.chain_862,blat.proc3825160.chain_863,blat.proc3825160.chain_864,blat.proc3825160.chain_865,blat.proc3825160.chain_866	11	Trinity_GG_13230_c0_g1_i5,Trinity_GG_13230_c0_g1_i6,blat.proc3825160.chain_867,blat.proc3825160.chain_868	4
scaffold_8	starts_in_intron	11846359	11846359	+	asmbl_53281	none	blat.proc3825168.chain_3027	1	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3016,blat.proc3825168.chain_3019,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022,blat.proc3825168.chain_3023	9
scaffold_13	skipped_exon	12251472	12253769	+	asmbl_11347,asmbl_11349	none	STRG.16359.2,Trinity_GG_26285_c0_g1_i1,blat.proc3825172.chain_1114	3	STRG.16359.1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1115	3
scaffold_22	ends_in_intron	4363201	4363201	+	asmbl_29989	none	STRG.24855.1,blat.proc3825176.chain_1942	2	STRG.24855.2	1
scaffold_17	alternate_exon	8157399	8157485	+	asmbl_18939,asmbl_18940	none	blat.proc3825174.chain_1263,blat.proc3825174.chain_1265	2	STRG.20433.1,STRG.20433.2	2
scaffold_12	alt_acceptor	14173744	14173745	+	asmbl_8067	none	STRG.15252.3,blat.proc3825172.chain_4	2	blat.proc3825172.chain_2	1
scaffold_7	ends_in_intron	1503965	1503965	+	asmbl_49609	none	STRG.8643.1,blat.proc3825168.chain_1063	2	STRG.8643.2,blat.proc3825168.chain_1064	2
scaffold_6	retained_intron	18098902	18099238	+	asmbl_47821	none	Trinity_GG_22016_c0_g1_i11,blat.proc3825168.chain_1019	2	STRG.8502.5,blat.proc3825168.chain_1024	2
scaffold_1	spliced_intron	5542906	5543635	-	asmbl_272,asmbl_273	none	STRG.347.1,STRG.347.2,blat.proc3825148.chain_317	3	STRG.347.3,Trinity_GG_184_c1_g1_i1,blat.proc3825148.chain_318	3
scaffold_2	alt_acceptor	15375639	15375640	+	asmbl_25036	none	STRG.2493.2	1	STRG.2493.1,blat.proc3825164.chain_2778	2
scaffold_18	alt_acceptor	5584680	5584681	-	asmbl_19864	none	STRG.21314.2	1	STRG.21314.1,blat.proc3825158.chain_2238,blat.proc3825158.chain_2269,blat.proc3825158.chain_2270	4
scaffold_7	starts_in_intron	8327416	8327416	-	asmbl_51012	none	blat.proc3825152.chain_1394	1	STRG.9069.1,STRG.9069.3,blat.proc3825152.chain_1384,blat.proc3825152.chain_1386,blat.proc3825152.chain_1389,blat.proc3825152.chain_1390,blat.proc3825152.chain_1393	7
scaffold_1	spliced_intron	5206637	5207244	+	asmbl_1705,asmbl_1707,asmbl_1709,asmbl_1710,asmbl_1711	none	STRG.329.1,STRG.329.3,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_476	5	STRG.329.2,blat.proc3825164.chain_472	2
scaffold_20	alt_donor	6281160	6281161	+	asmbl_26657	none	STRG.23227.1	1	STRG.23227.2	1
scaffold_2	starts_in_intron	8864016	8864016	+	asmbl_24651	none	Trinity_GG_18525_c0_g1_i1,blat.proc3825164.chain_2334	2	STRG.2140.1,STRG.2140.2,blat.proc3825164.chain_2332,blat.proc3825164.chain_2333,blat.proc3825164.chain_2335,blat.proc3825164.chain_2336	6
scaffold_27	retained_exon	974848	975044	+	asmbl_35967	none	STRG.28595.4	1	Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	2
scaffold_16	skipped_exon	13216831	13218820	+	asmbl_16652,asmbl_16656	none	STRG.19781.2,STRG.19781.3,blat.proc3825174.chain_693	3	STRG.19781.1,blat.proc3825174.chain_694,blat.proc3825174.chain_695	3
scaffold_16	alt_donor	4638507	4638508	+	asmbl_16191	none	STRG.19250.1,blat.proc3825174.chain_52	2	STRG.19250.2	1
scaffold_26	alt_donor	10097582	10097583	-	asmbl_35811	none	STRG.28531.2	1	STRG.28531.1,blat.proc3825162.chain_1717	2
scaffold_10	ends_in_intron	13782047	13782047	+	asmbl_3621	none	blat.proc3825170.chain_1555	1	STRG.12979.1,STRG.12979.2,STRG.12979.3	3
scaffold_24	ends_in_intron	6448325	6448325	+	asmbl_32313,asmbl_32318	none	STRG.26699.3,blat.proc3825176.chain_3617	2	STRG.26699.1,STRG.26699.2,blat.proc3825176.chain_3611,blat.proc3825176.chain_3613,blat.proc3825176.chain_3614,blat.proc3825176.chain_3615,blat.proc3825176.chain_3618,blat.proc3825176.chain_3620	8
scaffold_19	ends_in_intron	3508271	3508271	+	asmbl_21321	none	blat.proc3825174.chain_3048	1	STRG.22035.1,blat.proc3825174.chain_3050	2
scaffold_12	alt_donor	6420307	6420308	+	asmbl_7680,asmbl_7681,asmbl_7682,asmbl_7683,asmbl_7684	none	STRG.14753.1,STRG.14753.2,STRG.14753.3,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274,blat.proc3825170.chain_3275	6	blat.proc3825170.chain_3272	1
scaffold_9	spliced_intron	10063361	10063447	+	asmbl_54274	none	STRG.11367.1,Trinity_GG_23622_c0_g1_i2,blat.proc3825170.chain_106	3	STRG.11367.2,Trinity_GG_23622_c0_g1_i1,Trinity_GG_23622_c0_g1_i3,blat.proc3825170.chain_105,blat.proc3825170.chain_107	5
scaffold_8	alt_acceptor	6900634	6900635	+	asmbl_52968,asmbl_52970,asmbl_52971	none	STRG.10051.1,blat.proc3825168.chain_2534,blat.proc3825168.chain_2536,blat.proc3825168.chain_2537	4	STRG.10051.2,STRG.10051.3	2
scaffold_27	alt_acceptor	4380725	4380726	+	asmbl_36282	none	blat.proc3825178.chain_2085	1	STRG.28897.2,blat.proc3825178.chain_2086	2
scaffold_11	alt_donor	3737535	3737536	-	asmbl_6571,asmbl_6572	none	STRG.13497.2,blat.proc3825154.chain_2062	2	STRG.13497.1,blat.proc3825154.chain_2060,blat.proc3825154.chain_2061	3
scaffold_3	spliced_intron	13898905	13899019	+	asmbl_40467,asmbl_40469	none	STRG.3736.1,blat.proc3825166.chain_230,blat.proc3825166.chain_232	3	blat.proc3825166.chain_231	1
scaffold_19	retained_intron	8219321	8219725	-	asmbl_22283	none	blat.proc3825158.chain_3084,blat.proc3825158.chain_3085	2	STRG.22275.1,STRG.22275.3,blat.proc3825158.chain_3083	3
scaffold_26	spliced_intron	5895307	5895541	-	asmbl_35639,asmbl_35643,asmbl_35644	none	STRG.28301.1,STRG.28301.3,blat.proc3825162.chain_1468,blat.proc3825162.chain_1473	4	STRG.28301.2,blat.proc3825162.chain_1472	2
scaffold_15	starts_in_intron	6081325	6081325	-	asmbl_14240	none	blat.proc3825156.chain_3122	1	STRG.18271.1,blat.proc3825156.chain_3120,blat.proc3825156.chain_3121	3
scaffold_4	alt_acceptor	12531949	12531950	-	asmbl_42917	none	STRG.4888.1,Trinity_GG_2721_c0_g1_i3,blat.proc3825150.chain_1068	3	STRG.4888.2	1
scaffold_25	alternate_exon	6163059	6163226	+	asmbl_33596	none	STRG.27502.4	1	STRG.27502.1,blat.proc3825178.chain_603	2
scaffold_1	spliced_intron	14305743	14305929	+	asmbl_2376	none	STRG.1021.1,blat.proc3825164.chain_1213	2	Trinity_GG_17936_c0_g1_i4,blat.proc3825164.chain_1214	2
scaffold_27	alt_donor	4938754	4938755	+	asmbl_36325,asmbl_36326,asmbl_36329	none	STRG.28932.1,STRG.28932.2,blat.proc3825178.chain_2145,blat.proc3825178.chain_2147	4	STRG.28932.4	1
scaffold_1	retained_intron	5734339	5734453	+	asmbl_1768,asmbl_1769	none	blat.proc3825164.chain_505,blat.proc3825164.chain_509	2	STRG.389.1,STRG.389.2,blat.proc3825164.chain_506,blat.proc3825164.chain_508	4
scaffold_10	retained_exon	11970328	11971084	+	asmbl_3515	none	STRG.12838.3	1	STRG.12838.5	1
scaffold_19	spliced_intron	13007510	13007842	+	asmbl_21835,asmbl_21838,asmbl_21840,asmbl_21843	none	STRG.22623.1,Trinity_GG_29821_c0_g1_i14,Trinity_GG_29821_c0_g1_i5,Trinity_GG_29821_c0_g1_i6,Trinity_GG_29821_c0_g1_i8,blat.proc3825174.chain_3643,blat.proc3825174.chain_3644,blat.proc3825174.chain_3649,blat.proc3825174.chain_3652	9	Trinity_GG_29821_c0_g1_i3,blat.proc3825174.chain_3648	2
scaffold_7	starts_in_intron	7637251	7637251	-	asmbl_50960	none	blat.proc3825152.chain_1354	1	STRG.9019.1,blat.proc3825152.chain_1355,blat.proc3825152.chain_1356	3
scaffold_20	skipped_exon	426291	428804	+	asmbl_26352	none	STRG.22745.2	1	STRG.22745.1	1
scaffold_3	retained_intron	17831614	17832488	+	asmbl_40699,asmbl_40700	none	STRG.3996.2,blat.proc3825166.chain_505	2	STRG.3996.1,blat.proc3825166.chain_502	2
scaffold_1	spliced_intron	5964053	5964145	+	asmbl_1805,asmbl_1807	none	STRG.400.1,STRG.400.2,blat.proc3825164.chain_540	3	Trinity_GG_17575_c0_g1_i3,blat.proc3825164.chain_541	2
scaffold_13	alt_donor	381912	381913	-	asmbl_9322	none	STRG.15437.4,blat.proc3825156.chain_262	2	STRG.15437.1,STRG.15437.3,blat.proc3825156.chain_263	3
scaffold_13	alternate_exon	6619116	6619724	-	asmbl_9808	none	STRG.15958.2,Trinity_GG_8985_c0_g1_i3,blat.proc3825156.chain_864	3	STRG.15958.1	1
scaffold_21	alternate_exon	3732173	3732250	-	asmbl_27528	none	STRG.23962.2,blat.proc3825160.chain_1089	2	STRG.23962.1,blat.proc3825160.chain_1091	2
scaffold_15	spliced_intron	12597437	12597600	-	asmbl_14586,asmbl_14589,asmbl_14591	none	STRG.18712.1,blat.proc3825156.chain_3573,blat.proc3825156.chain_3575,blat.proc3825156.chain_3577	4	Trinity_GG_10507_c0_g1_i6,blat.proc3825156.chain_3574,blat.proc3825156.chain_3576	3
scaffold_7	starts_in_intron	1234374	1234374	+	asmbl_49593	none	blat.proc3825168.chain_1072	1	STRG.8637.1,STRG.8637.2,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1074,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	12
scaffold_11	ends_in_intron	6240699	6240699	+	asmbl_5616	none	Trinity_GG_24848_c0_g1_i1,blat.proc3825170.chain_2222	2	STRG.13678.1,blat.proc3825170.chain_2223	2
scaffold_5	retained_intron	5838814	5839033	-	asmbl_44059	none	Trinity_GG_3378_c0_g1_i2,blat.proc3825150.chain_2209	2	STRG.5997.1,blat.proc3825150.chain_2206,blat.proc3825150.chain_2210	3
scaffold_5	spliced_intron	17301487	17301540	+	asmbl_46160	none	STRG.6909.3	1	STRG.6909.1,STRG.6909.2,Trinity_GG_21093_c1_g1_i2	3
scaffold_8	starts_in_intron	7809012	7809012	+	asmbl_52998	none	Trinity_GG_22921_c0_g1_i3,blat.proc3825168.chain_2647	2	blat.proc3825168.chain_2646	1
scaffold_5	retained_intron	4729823	4729920	-	asmbl_44005	none	blat.proc3825150.chain_2135	1	STRG.5930.1,blat.proc3825150.chain_2134	2
scaffold_2	starts_in_intron	14153307	14153307	+	asmbl_24886	none	Trinity_GG_18668_c0_g1_i2,blat.proc3825164.chain_2644	2	STRG.2411.1,blat.proc3825164.chain_2643	2
scaffold_2	retained_intron	18610276	18610519	-	asmbl_23800	none	STRG.2736.1,Trinity_GG_1475_c0_g1_i2,blat.proc3825148.chain_2625	3	STRG.2736.2	1
scaffold_22	skipped_exon	11475386	11476106	-	asmbl_29681	none	STRG.25494.1	1	STRG.25494.2	1
scaffold_26	ends_in_intron	8591903	8591903	-	asmbl_35740	none	Trinity_GG_15895_c0_g2_i1,blat.proc3825162.chain_1638	2	STRG.28447.1,blat.proc3825162.chain_1637	2
scaffold_13	alt_donor	8806814	8806815	-	asmbl_9983,asmbl_9984,asmbl_9987	none	blat.proc3825156.chain_1065,blat.proc3825156.chain_1066,blat.proc3825156.chain_1067	3	blat.proc3825156.chain_1070,blat.proc3825156.chain_1072	2
scaffold_21	retained_intron	6617873	6617964	+	asmbl_28672	none	Trinity_GG_30735_c0_g2_i3,blat.proc3825176.chain_1437	2	STRG.24188.1,STRG.24188.2,Trinity_GG_30735_c0_g2_i2,blat.proc3825176.chain_1434,blat.proc3825176.chain_1435,blat.proc3825176.chain_1436	6
scaffold_5	alt_acceptor	12811849	12811850	-	asmbl_44485	none	STRG.6509.1	1	STRG.6509.2	1
scaffold_12	alt_donor	9236182	9236183	-	asmbl_8662,asmbl_8663,asmbl_8671	none	STRG.14939.5,blat.proc3825154.chain_3447,blat.proc3825154.chain_3455,blat.proc3825154.chain_3456	4	STRG.14939.1,blat.proc3825154.chain_3450,blat.proc3825154.chain_3454	3
scaffold_9	spliced_intron	12438282	12438337	+	asmbl_54433	none	STRG.11558.2	1	STRG.11558.1,Trinity_GG_23767_c0_g1_i1,blat.proc3825170.chain_378	3
scaffold_15	retained_intron	13041931	13042295	+	asmbl_15615,asmbl_15618	none	Trinity_GG_27606_c0_g2_i3,blat.proc3825172.chain_3407,blat.proc3825172.chain_3409	3	STRG.18741.1,Trinity_GG_27606_c0_g2_i2,blat.proc3825172.chain_3406	3
scaffold_3	spliced_intron	4889563	4889668	+	asmbl_40038,asmbl_40039	none	STRG.3183.4,blat.proc3825164.chain_3433	2	Trinity_GG_19105_c1_g1_i6,blat.proc3825164.chain_3436	2
scaffold_17	retained_intron	1303722	1303950	-	asmbl_17700	none	blat.proc3825158.chain_1035	1	STRG.19975.1,STRG.19975.2,blat.proc3825158.chain_1029,blat.proc3825158.chain_1030,blat.proc3825158.chain_1031,blat.proc3825158.chain_1032,blat.proc3825158.chain_1034	7
scaffold_14	alt_acceptor	7495628	7495629	+	asmbl_12166	none	STRG.17193.2,Trinity_GG_26725_c1_g1_i2,blat.proc3825172.chain_1882	3	STRG.17193.4	1
scaffold_8	alt_acceptor	18421738	18421739	+	asmbl_53544,asmbl_53546	none	STRG.10741.2,blat.proc3825168.chain_3257,blat.proc3825168.chain_3258	3	STRG.10741.1,blat.proc3825168.chain_3256	2
scaffold_2	ends_in_intron	18611946	18611946	-	asmbl_23803	none	Trinity_GG_1490_c0_g2_i1,blat.proc3825148.chain_2651	2	blat.proc3825148.chain_2650	1
scaffold_26	skipped_exon	3941793	3943946	-	asmbl_35515	none	STRG.28082.1	1	STRG.28082.2,blat.proc3825162.chain_1375	2
scaffold_27	alt_donor	6258393	6258394	+	asmbl_36396,asmbl_36397,asmbl_36398	none	STRG.29016.3,blat.proc3825178.chain_2191,blat.proc3825178.chain_2193	3	STRG.29016.2,blat.proc3825178.chain_2194	2
scaffold_28	ends_in_intron	9422080	9422080	-	asmbl_38512	none	blat.proc3825162.chain_3152	1	STRG.29973.1,blat.proc3825162.chain_3153	2
scaffold_11	ends_in_intron	6255655	6255655	+	asmbl_5620	none	blat.proc3825170.chain_2237	1	STRG.13692.1,STRG.13692.2,blat.proc3825170.chain_2239,blat.proc3825170.chain_2242	4
scaffold_16	alternate_exon	440300	440745	-	asmbl_16884	none	blat.proc3825158.chain_209	1	STRG.19042.3,blat.proc3825158.chain_210	2
scaffold_10	spliced_intron	6467752	6468715	-	asmbl_4464,asmbl_4465,asmbl_4467,asmbl_4469	none	blat.proc3825154.chain_1049,blat.proc3825154.chain_1050,blat.proc3825154.chain_1052,blat.proc3825154.chain_1054	4	blat.proc3825154.chain_1051,blat.proc3825154.chain_1053	2
scaffold_21	alt_acceptor	6507831	6507832	+	asmbl_28656	none	STRG.24172.1,blat.proc3825176.chain_1378	2	STRG.24172.2,STRG.24172.3,blat.proc3825176.chain_1377	3
scaffold_7	retained_intron	17339140	17339176	-	asmbl_51427	none	STRG.9613.1	1	STRG.9613.2,STRG.9613.3	2
scaffold_4	skipped_exon	18529883	18530351	-	asmbl_43378	none	STRG.5456.1	1	STRG.5456.2	1
scaffold_26	retained_intron	2253736	2255266	+	asmbl_34737	none	blat.proc3825178.chain_1017	1	STRG.27955.1,STRG.27955.2,blat.proc3825178.chain_1018	3
scaffold_13	retained_intron	10226230	10226249	-	asmbl_10054,asmbl_10055,asmbl_10056	none	STRG.16258.1,STRG.16258.2,STRG.16258.4	3	STRG.16258.3	1
scaffold_7	alt_donor	4177686	4177687	+	asmbl_49724,asmbl_49726	none	STRG.8817.1,blat.proc3825168.chain_1254	2	STRG.8817.2,STRG.8817.3,blat.proc3825168.chain_1255	3
scaffold_2	alternate_exon	888819	889458	+	asmbl_24131	none	blat.proc3825164.chain_1715	1	blat.proc3825164.chain_1712	1
scaffold_7	retained_intron	18127677	18127784	+	asmbl_50511	none	blat.proc3825168.chain_2149	1	blat.proc3825168.chain_2148	1
scaffold_2	starts_in_intron	13448365	13448365	-	asmbl_23517,asmbl_23520	none	blat.proc3825148.chain_2360,blat.proc3825148.chain_2362	2	STRG.2363.1,blat.proc3825148.chain_2363,blat.proc3825148.chain_2364	3
scaffold_21	retained_intron	5594719	5594820	-	asmbl_27678	none	Trinity_GG_13438_c0_g1_i2,blat.proc3825160.chain_1253	2	STRG.24091.1,blat.proc3825160.chain_1252	2
scaffold_5	alternate_exon	1097167	1097186	-	asmbl_43820	none	blat.proc3825150.chain_1910	1	STRG.5661.1	1
scaffold_9	starts_in_intron	15393951	15393951	+	asmbl_54566,asmbl_54567	none	STRG.11741.2,STRG.11741.3,Trinity_GG_23876_c0_g1_i2,Trinity_GG_23876_c0_g1_i8,blat.proc3825170.chain_555,blat.proc3825170.chain_556	6	STRG.11741.1,Trinity_GG_23876_c0_g1_i3,Trinity_GG_23876_c0_g1_i4,Trinity_GG_23876_c0_g1_i5,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i7,blat.proc3825170.chain_551,blat.proc3825170.chain_552,blat.proc3825170.chain_553,blat.proc3825170.chain_554,blat.proc3825170.chain_557	11
scaffold_3	alt_acceptor	13160382	13160383	+	asmbl_40425,asmbl_40426,asmbl_40427	none	STRG.3681.2,blat.proc3825166.chain_135,blat.proc3825166.chain_137	3	STRG.3681.1,blat.proc3825166.chain_136	2
scaffold_10	spliced_intron	12895006	12895119	-	asmbl_4837,asmbl_4839	none	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1475	3	blat.proc3825154.chain_1473	1
scaffold_6	retained_exon	14622605	14623228	-	asmbl_49015	none	STRG.8228.7,blat.proc3825152.chain_630	2	STRG.8228.6	1
scaffold_7	alternate_exon	4501602	4501706	-	asmbl_50863,asmbl_50867	none	STRG.8821.2,blat.proc3825152.chain_1302,blat.proc3825152.chain_1304	3	blat.proc3825152.chain_1301	1
scaffold_5	alternate_exon	13098203	13098239	+	asmbl_45853	none	STRG.6545.2	1	STRG.6545.1	1
scaffold_15	alternate_exon	1506381	1506653	+	asmbl_15016	none	STRG.17964.1	1	STRG.17964.2,Trinity_GG_27185_c0_g1_i4,blat.proc3825172.chain_2673	3
scaffold_6	ends_in_intron	3291669	3291669	+	asmbl_46826	none	blat.proc3825166.chain_3459	1	STRG.7335.1,blat.proc3825166.chain_3456,blat.proc3825166.chain_3457	3
scaffold_12	alt_acceptor	16398667	16398668	+	asmbl_8168	none	STRG.15402.1,Trinity_GG_25733_c0_g1_i11,blat.proc3825172.chain_47	3	STRG.15402.2,STRG.15402.3,STRG.15402.4,STRG.15402.5,STRG.15402.6,Trinity_GG_25733_c0_g1_i13,Trinity_GG_25733_c0_g1_i3,Trinity_GG_25733_c0_g1_i9,blat.proc3825172.chain_42,blat.proc3825172.chain_44,blat.proc3825172.chain_48	11
scaffold_4	ends_in_intron	12568300	12568300	-	asmbl_42929	none	blat.proc3825150.chain_1079	1	STRG.4892.1,STRG.4892.2,blat.proc3825150.chain_1080	3
scaffold_11	retained_intron	8735988	8736072	+	asmbl_5837	none	STRG.13894.1	1	blat.proc3825170.chain_2452	1
scaffold_13	spliced_intron	3733822	3733964	+	asmbl_10730,asmbl_10731,asmbl_10733	none	STRG.15695.2,blat.proc3825172.chain_447	2	blat.proc3825172.chain_443,blat.proc3825172.chain_448	2
scaffold_24	alternate_exon	7864325	7864372	-	asmbl_33075	none	blat.proc3825162.chain_224	1	STRG.26842.2,blat.proc3825162.chain_225	2
scaffold_4	retained_intron	17622846	17622975	+	asmbl_42069	none	blat.proc3825166.chain_1736	1	STRG.5351.1,blat.proc3825166.chain_1735	2
scaffold_10	alternate_exon	3928786	3929132	-	asmbl_4240	none	STRG.12235.4,blat.proc3825154.chain_798	2	STRG.12235.1,blat.proc3825154.chain_797,blat.proc3825154.chain_801,blat.proc3825154.chain_802	4
scaffold_4	skipped_exon	15295339	15296103	+	asmbl_41939,asmbl_41941	none	STRG.5125.1,blat.proc3825166.chain_1527,blat.proc3825166.chain_1528	3	STRG.5125.2	1
scaffold_6	alt_donor	5937921	5937922	-	asmbl_48440	none	STRG.7548.2	1	STRG.7548.1	1
scaffold_12	retained_intron	16399852	16401627	+	asmbl_8168,asmbl_8169,asmbl_8170,asmbl_8172	none	STRG.15402.1,STRG.15402.3,STRG.15402.5,STRG.15402.6,Trinity_GG_25733_c0_g1_i10,Trinity_GG_25733_c0_g1_i11,Trinity_GG_25733_c0_g1_i13,blat.proc3825172.chain_40,blat.proc3825172.chain_46,blat.proc3825172.chain_47,blat.proc3825172.chain_48	11	STRG.15402.2,Trinity_GG_25733_c0_g1_i3,blat.proc3825172.chain_44	3
scaffold_10	spliced_intron	3065944	3066072	-	asmbl_4155,asmbl_4156,asmbl_4159	none	STRG.12130.2,STRG.12130.3,blat.proc3825154.chain_662,blat.proc3825154.chain_663,blat.proc3825154.chain_665	5	blat.proc3825154.chain_666,blat.proc3825154.chain_667	2
scaffold_25	ends_in_intron	9561752	9561752	-	asmbl_34510	none	Trinity_GG_15539_c0_g1_i6,blat.proc3825162.chain_1066	2	STRG.27775.1,blat.proc3825162.chain_1070	2
scaffold_24	starts_in_intron	9101382	9101382	-	asmbl_33133	none	blat.proc3825162.chain_287	1	STRG.26935.2,Trinity_GG_15069_c0_g1_i1,blat.proc3825162.chain_286	3
scaffold_13	alt_donor	12244104	12244105	+	asmbl_11346	none	STRG.16354.2	1	STRG.16354.1,STRG.16354.3	2
scaffold_7	skipped_exon	7415203	7417634	+	asmbl_49920	none	STRG.8994.1,blat.proc3825168.chain_1498	2	STRG.8994.2,Trinity_GG_22293_c0_g1_i1,blat.proc3825168.chain_1499	3
scaffold_25	alt_donor	3293926	3293927	-	asmbl_34118,asmbl_34120,asmbl_34124	none	STRG.27284.2,STRG.27284.3,STRG.27284.6,blat.proc3825162.chain_656,blat.proc3825162.chain_657,blat.proc3825162.chain_658	6	STRG.27284.7	1
scaffold_26	retained_intron	5561589	5561755	+	asmbl_35025,asmbl_35028	none	STRG.28267.2,Trinity_GG_32902_c1_g1_i1,blat.proc3825178.chain_1304	3	STRG.28267.1,blat.proc3825178.chain_1303	2
scaffold_14	retained_intron	2376089	2376796	-	asmbl_12934,asmbl_12935,asmbl_12936,asmbl_12937	none	STRG.16854.3,STRG.16854.6,STRG.16854.7,Trinity_GG_9462_c0_g1_i1,Trinity_GG_9462_c0_g1_i7,blat.proc3825156.chain_1714	6	STRG.16854.1,STRG.16854.2,STRG.16854.4,STRG.16854.5	4
scaffold_7	alt_acceptor	18394745	18394746	-	asmbl_51469,asmbl_51470,asmbl_51472,asmbl_51474,asmbl_51475,asmbl_51479	none	STRG.9670.2,STRG.9670.4,STRG.9670.5,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2015,blat.proc3825152.chain_2018	9	STRG.9670.1,STRG.9670.3,STRG.9670.6,STRG.9670.7,blat.proc3825152.chain_2016,blat.proc3825152.chain_2020	6
scaffold_12	starts_in_intron	14108647	14108647	-	asmbl_8978,asmbl_8984	none	Trinity_GG_8557_c0_g1_i11,blat.proc3825156.chain_87,blat.proc3825156.chain_92	3	STRG.15241.1,Trinity_GG_8557_c0_g1_i4,Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_88,blat.proc3825156.chain_91,blat.proc3825156.chain_93,blat.proc3825156.chain_94,blat.proc3825156.chain_95,blat.proc3825156.chain_96,blat.proc3825156.chain_97	11
scaffold_4	ends_in_intron	3270622	3270622	+	asmbl_41164,asmbl_41166	none	STRG.4255.2,blat.proc3825166.chain_627	2	STRG.4255.1,blat.proc3825166.chain_625,blat.proc3825166.chain_626,blat.proc3825166.chain_628	4
scaffold_1	alternate_exon	20346338	20348389	+	asmbl_2623	none	blat.proc3825164.chain_1584	1	STRG.1396.6	1
scaffold_27	starts_in_intron	145217	145217	-	asmbl_36647,asmbl_36648	none	STRG.28551.1,Trinity_GG_15968_c0_g1_i1,blat.proc3825162.chain_1770	3	STRG.28551.2,Trinity_GG_15968_c0_g1_i2,blat.proc3825162.chain_1769	3
scaffold_15	alternate_exon	15347372	15347712	+	asmbl_15752	none	STRG.18919.4,blat.proc3825172.chain_3554	2	STRG.18919.1	1
scaffold_13	alternate_exon	5506942	5507049	+	asmbl_10857	none	STRG.15845.2,Trinity_GG_25977_c0_g1_i2,blat.proc3825172.chain_516	3	STRG.15845.4,Trinity_GG_25977_c0_g1_i3,blat.proc3825172.chain_513	3
scaffold_7	alt_donor	3815233	3815234	+	asmbl_49701	none	STRG.8773.1,blat.proc3825168.chain_1251	2	Trinity_GG_22142_c0_g1_i2,blat.proc3825168.chain_1252	2
scaffold_28	starts_in_intron	7155362	7155362	+	asmbl_37637	none	blat.proc3825178.chain_2925	1	STRG.29775.1,STRG.29775.2,blat.proc3825178.chain_2927,blat.proc3825178.chain_2928	4
scaffold_27	starts_in_intron	1550827	1550827	+	asmbl_36023,asmbl_36026	none	STRG.28642.3,blat.proc3825178.chain_1742,blat.proc3825178.chain_1744	3	STRG.28642.1,STRG.28642.2,Trinity_GG_33147_c0_g1_i4,Trinity_GG_33147_c0_g1_i5,blat.proc3825178.chain_1740,blat.proc3825178.chain_1741	6
scaffold_2	starts_in_intron	14276464	14276464	+	asmbl_24906	none	blat.proc3825164.chain_2592	1	STRG.2428.1,STRG.2428.2,STRG.2428.3,blat.proc3825164.chain_2591,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596,blat.proc3825164.chain_2597	8
scaffold_6	retained_intron	13983939	13984518	-	asmbl_48968	none	Trinity_GG_4653_c0_g2_i6,blat.proc3825152.chain_617	2	STRG.8159.1,blat.proc3825152.chain_612,blat.proc3825152.chain_614,blat.proc3825152.chain_615	4
scaffold_15	ends_in_intron	1500339	1500339	-	asmbl_13952	none	Trinity_GG_10109_c0_g1_i15,blat.proc3825156.chain_2807	2	blat.proc3825156.chain_2803	1
scaffold_24	spliced_intron	6297543	6297691	+	asmbl_32300	none	STRG.26687.1,Trinity_GG_32069_c0_g1_i1,blat.proc3825176.chain_3641	3	STRG.26687.3,Trinity_GG_32069_c0_g1_i3,blat.proc3825176.chain_3642	3
scaffold_21	spliced_intron	6618853	6618996	+	asmbl_28672,asmbl_28673,asmbl_28674,asmbl_28678	none	STRG.24188.1,STRG.24188.2,Trinity_GG_30735_c0_g1_i2,Trinity_GG_30735_c0_g2_i3,blat.proc3825176.chain_1431,blat.proc3825176.chain_1434,blat.proc3825176.chain_1435,blat.proc3825176.chain_1437	8	Trinity_GG_30735_c0_g2_i2,blat.proc3825176.chain_1436	2
scaffold_8	alt_acceptor	4238920	4238921	-	asmbl_51770	none	blat.proc3825152.chain_2102	1	STRG.9906.1,blat.proc3825152.chain_2101,blat.proc3825152.chain_2104	3
scaffold_13	starts_in_intron	360548	360548	-	asmbl_9315	none	Trinity_GG_8663_c0_g1_i12,blat.proc3825156.chain_291	2	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,STRG.15442.5,Trinity_GG_8663_c0_g1_i10,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i22,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_294,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_297,blat.proc3825156.chain_300	15
scaffold_5	alt_donor	15111899	15111900	-	asmbl_44644	none	STRG.6701.1,Trinity_GG_3759_c0_g1_i1,blat.proc3825150.chain_2889	3	STRG.6701.2,STRG.6701.3,Trinity_GG_3759_c0_g1_i3,blat.proc3825150.chain_2888	4
scaffold_17	alternate_exon	12366137	12368474	-	asmbl_18327	none	STRG.20776.2	1	STRG.20776.4,Trinity_GG_11637_c1_g2_i1	2
scaffold_25	alt_donor	7338367	7338368	+	asmbl_33667	none	STRG.27588.2,blat.proc3825178.chain_656	2	STRG.27588.1,STRG.27588.3,STRG.27588.4,Trinity_GG_32501_c0_g1_i3,Trinity_GG_32501_c0_g1_i6,blat.proc3825178.chain_657,blat.proc3825178.chain_659	7
scaffold_13	alt_acceptor	5551885	5551886	+	asmbl_10872	none	blat.proc3825172.chain_588	1	STRG.15856.1,blat.proc3825172.chain_587	2
scaffold_2	retained_intron	13961990	13962517	-	asmbl_23549	none	STRG.2386.2,blat.proc3825148.chain_2381	2	STRG.2386.1,blat.proc3825148.chain_2380	2
scaffold_1	retained_exon	14364086	14364252	-	asmbl_904	none	STRG.1037.2,blat.proc3825148.chain_1034	2	STRG.1037.3	1
scaffold_25	skipped_exon	3292205	3293927	-	asmbl_34120	none	STRG.27284.2,blat.proc3825162.chain_656	2	STRG.27284.3,blat.proc3825162.chain_657	2
scaffold_22	alt_acceptor	9725619	9725620	+	asmbl_30318	none	STRG.25310.2	1	STRG.25310.1,blat.proc3825176.chain_2357	2
scaffold_19	alt_donor	8731821	8731822	-	asmbl_22306	none	STRG.22321.2,blat.proc3825158.chain_3016	2	STRG.22321.1,blat.proc3825158.chain_3015	2
scaffold_25	starts_in_intron	9449037	9449037	+	asmbl_33818	none	STRG.27758.3,blat.proc3825178.chain_803	2	STRG.27758.1,STRG.27758.2,blat.proc3825178.chain_801,blat.proc3825178.chain_804	4
scaffold_9	alternate_exon	18390133	18391132	+	asmbl_54663,asmbl_54664	none	STRG.11879.1,STRG.11879.3	2	STRG.11879.2,blat.proc3825170.chain_645	2
scaffold_7	retained_intron	12270450	12271204	+	asmbl_50232,asmbl_50234	none	STRG.9326.5,blat.proc3825168.chain_1801	2	STRG.9326.2,STRG.9326.4,STRG.9326.6,Trinity_GG_22467_c0_g1_i4,Trinity_GG_22467_c0_g1_i5,blat.proc3825168.chain_1798,blat.proc3825168.chain_1806	7
scaffold_13	retained_exon	2662068	2662117	-	asmbl_9474	none	blat.proc3825156.chain_385	1	STRG.15572.1,blat.proc3825156.chain_386	2
scaffold_1	alt_donor	6907149	6907150	-	asmbl_402	none	blat.proc3825148.chain_444	1	STRG.487.1,blat.proc3825148.chain_442	2
scaffold_2	retained_exon	14740443	14740493	+	asmbl_24973,asmbl_24981	none	STRG.2475.2,blat.proc3825164.chain_2626,blat.proc3825164.chain_2632	3	STRG.2475.1,blat.proc3825164.chain_2627,blat.proc3825164.chain_2630	3
scaffold_15	starts_in_intron	8938862	8938862	-	asmbl_14361	none	blat.proc3825156.chain_3337	1	STRG.18440.1,blat.proc3825156.chain_3336	2
scaffold_23	alt_acceptor	9956723	9956724	-	asmbl_31116	none	STRG.26203.3	1	STRG.26203.1,STRG.26203.2,blat.proc3825160.chain_3297,blat.proc3825160.chain_3298	4
scaffold_12	retained_exon	14225620	14225625	+	asmbl_8071	none	blat.proc3825172.chain_14	1	STRG.15261.2	1
scaffold_16	spliced_intron	1510638	1511404	+	asmbl_16085	none	STRG.19099.3	1	STRG.19099.1,blat.proc3825174.chain_10	2
scaffold_28	starts_in_intron	5226907	5226907	-	asmbl_38259	none	blat.proc3825162.chain_2847	1	STRG.29674.1,STRG.29674.2,blat.proc3825162.chain_2843,blat.proc3825162.chain_2844,blat.proc3825162.chain_2846,blat.proc3825162.chain_2848	6
scaffold_21	retained_intron	9866643	9866822	-	asmbl_27978	none	STRG.24445.1	1	STRG.24445.3	1
scaffold_26	spliced_intron	5874800	5875093	-	asmbl_35632	none	STRG.28291.2,Trinity_GG_15831_c0_g1_i1,blat.proc3825162.chain_1536	3	STRG.28291.1,Trinity_GG_15831_c1_g1_i1,blat.proc3825162.chain_1537	3
scaffold_25	alternate_exon	3292529	3293378	-	asmbl_34124,asmbl_34126	none	STRG.27284.6,STRG.27284.7,blat.proc3825162.chain_658	3	STRG.27284.2,blat.proc3825162.chain_656	2
scaffold_3	retained_intron	17094412	17095225	-	asmbl_39536	none	Trinity_GG_2181_c0_g1_i2,blat.proc3825150.chain_130,blat.proc3825150.chain_132	3	STRG.3949.1,STRG.3949.2,blat.proc3825150.chain_131	3
scaffold_5	alternate_exon	16740604	16740940	-	asmbl_44774	none	STRG.6866.1,Trinity_GG_3844_c0_g1_i1,blat.proc3825150.chain_3033	3	STRG.6866.2,Trinity_GG_3844_c0_g1_i2,blat.proc3825150.chain_3034	3
scaffold_15	retained_intron	15179285	15179381	+	asmbl_15730,asmbl_15742	none	blat.proc3825172.chain_3523,blat.proc3825172.chain_3532	2	blat.proc3825172.chain_3526,blat.proc3825172.chain_3527	2
scaffold_17	ends_in_intron	3967431	3967431	-	asmbl_17833	none	Trinity_GG_11314_c0_g1_i2,blat.proc3825158.chain_1180	2	STRG.20155.1,blat.proc3825158.chain_1181	2
scaffold_4	alternate_exon	4411158	4413749	+	asmbl_41254	none	STRG.4349.3,blat.proc3825166.chain_843	2	Trinity_GG_19749_c0_g1_i2,Trinity_GG_19749_c0_g1_i21,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_842,blat.proc3825166.chain_845,blat.proc3825166.chain_850,blat.proc3825166.chain_852,blat.proc3825166.chain_853	8
scaffold_1	retained_intron	6953430	6953629	+	asmbl_1861	none	STRG.492.2,Trinity_GG_17619_c0_g1_i2,blat.proc3825164.chain_621	3	STRG.492.1	1
scaffold_22	starts_in_intron	290585	290585	+	asmbl_29830	none	Trinity_GG_30950_c0_g1_i2,blat.proc3825176.chain_1790	2	STRG.24678.1,blat.proc3825176.chain_1791	2
scaffold_2	alt_donor	2890147	2890148	-	asmbl_22930,asmbl_22935,asmbl_22936,asmbl_22939,asmbl_22940,asmbl_22941	none	STRG.1736.3,blat.proc3825148.chain_1668,blat.proc3825148.chain_1669,blat.proc3825148.chain_1670,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672,blat.proc3825148.chain_1673	7	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1667,blat.proc3825148.chain_1674	4
scaffold_2	retained_intron	6765125	6765361	+	asmbl_24496,asmbl_24497,asmbl_24498	none	Trinity_GG_18452_c0_g1_i2,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i9,blat.proc3825164.chain_2146,blat.proc3825164.chain_2147,blat.proc3825164.chain_2149	6	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	9
scaffold_15	alt_acceptor	16302351	16302352	-	asmbl_14826	none	STRG.18985.1,blat.proc3825158.chain_80	2	STRG.18985.2,blat.proc3825158.chain_79	2
scaffold_16	alt_acceptor	9556391	9556392	+	asmbl_16490,asmbl_16491	none	STRG.19552.1,Trinity_GG_27976_c0_g1_i1,blat.proc3825174.chain_392,blat.proc3825174.chain_394	4	Trinity_GG_27976_c0_g1_i2,blat.proc3825174.chain_393	2
scaffold_23	starts_in_intron	7387740	7387740	+	asmbl_31689	none	Trinity_GG_31683_c0_g1_i1,blat.proc3825176.chain_2980	2	STRG.26054.1,Trinity_GG_31683_c0_g1_i2,blat.proc3825176.chain_2979	3
scaffold_26	retained_intron	6659499	6659582	+	asmbl_35099	none	blat.proc3825178.chain_1445	1	STRG.28376.1,blat.proc3825178.chain_1443,blat.proc3825178.chain_1447	3
scaffold_25	skipped_exon	7342027	7342470	+	asmbl_33672	none	STRG.27589.2	1	STRG.27589.1,Trinity_GG_32527_c1_g1_i1,blat.proc3825178.chain_699	3
scaffold_17	alt_donor	13072800	13072801	-	asmbl_18346	none	STRG.20802.1,blat.proc3825158.chain_1806	2	STRG.20802.2	1
scaffold_4	ends_in_intron	12346218	12346218	-	asmbl_42905	none	blat.proc3825150.chain_1009	1	STRG.4867.1	1
scaffold_5	retained_intron	10853540	10853712	+	asmbl_45703	none	blat.proc3825166.chain_2523	1	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2521,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	5
scaffold_12	retained_intron	14045126	14045229	-	asmbl_8960	none	STRG.15234.3,blat.proc3825156.chain_40	2	STRG.15234.2,blat.proc3825156.chain_39	2
scaffold_4	skipped_exon	3251176	3252469	-	asmbl_42430	none	STRG.4250.2	1	STRG.4250.1,blat.proc3825150.chain_485	2
scaffold_17	alternate_exon	10048449	10048772	+	asmbl_19161,asmbl_19163,asmbl_19164	none	STRG.20618.1,STRG.20618.2,blat.proc3825174.chain_1496,blat.proc3825174.chain_1497	4	blat.proc3825174.chain_1500	1
scaffold_2	starts_in_intron	6900534	6900534	+	asmbl_24507	none	Trinity_GG_18453_c0_g2_i1,blat.proc3825164.chain_2161	2	STRG.2036.1,STRG.2036.2,STRG.2036.3,blat.proc3825164.chain_2155,blat.proc3825164.chain_2158,blat.proc3825164.chain_2160	6
scaffold_18	retained_intron	13649242	13649267	+	asmbl_21030	none	blat.proc3825174.chain_2823	1	STRG.21798.2	1
scaffold_15	starts_in_intron	11943343	11943343	-	asmbl_14540	none	Trinity_GG_10445_c0_g1_i4,blat.proc3825156.chain_3461	2	STRG.18636.1,STRG.18636.2,blat.proc3825156.chain_3459,blat.proc3825156.chain_3460,blat.proc3825156.chain_3462	5
scaffold_8	ends_in_intron	15765479	15765479	+	asmbl_53422	none	Trinity_GG_23199_c3_g1_i1,blat.proc3825168.chain_3130	2	STRG.10587.1	1
scaffold_7	spliced_intron	11851482	11851796	+	asmbl_50193	none	STRG.9305.3,blat.proc3825168.chain_1811	2	STRG.9305.2,Trinity_GG_22470_c0_g1_i1,blat.proc3825168.chain_1814	3
scaffold_18	alt_donor	7866819	7866820	-	asmbl_19982,asmbl_19983	none	blat.proc3825158.chain_2406,blat.proc3825158.chain_2407	2	STRG.21486.1	1
scaffold_12	retained_intron	1065757	1065908	-	asmbl_8291	none	STRG.14451.2	1	STRG.14451.1,blat.proc3825154.chain_2966,blat.proc3825154.chain_2968	3
scaffold_15	retained_exon	6883099	6883630	-	asmbl_14260	none	STRG.18301.4,Trinity_GG_10293_c0_g1_i10,blat.proc3825156.chain_3154	3	STRG.18301.1,STRG.18301.3,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153	7
scaffold_15	spliced_intron	15409993	15410182	+	asmbl_15770,asmbl_15773	none	STRG.18930.2,STRG.18930.7,blat.proc3825172.chain_3590	3	STRG.18930.4,blat.proc3825172.chain_3591	2
scaffold_13	alternate_exon	15362415	15362461	+	asmbl_11493	none	STRG.16579.2,Trinity_GG_26428_c0_g1_i2	2	STRG.16579.7,Trinity_GG_26428_c1_g1_i1	2
scaffold_6	alt_donor	13871377	13871378	+	asmbl_47543	none	STRG.8133.2,blat.proc3825152.chain_603,blat.proc3825168.chain_640	3	STRG.8133.1,Trinity_GG_21790_c0_g1_i3,Trinity_GG_4651_c0_g1_i1,blat.proc3825152.chain_605,blat.proc3825168.chain_639	5
scaffold_22	alt_donor	6155315	6155316	-	asmbl_29311,asmbl_29312,asmbl_29314	none	STRG.24977.2,STRG.24977.3,blat.proc3825160.chain_2107	3	STRG.24977.1,blat.proc3825160.chain_2105,blat.proc3825160.chain_2106	3
scaffold_12	retained_intron	9152051	9152228	+	asmbl_7859	none	blat.proc3825170.chain_3449	1	STRG.14923.1,blat.proc3825170.chain_3450,blat.proc3825170.chain_3451	3
scaffold_7	ends_in_intron	117846	117846	-	asmbl_50668	none	Trinity_GG_4930_c1_g1_i2,blat.proc3825152.chain_1103	2	STRG.8595.1,STRG.8595.2,STRG.8595.3,STRG.8595.5,STRG.8595.7,blat.proc3825152.chain_1101	6
scaffold_16	spliced_intron	14527856	14527939	-	asmbl_17455	none	STRG.19833.1,blat.proc3825158.chain_871	2	STRG.19833.2	1
scaffold_21	alt_acceptor	2483173	2483174	-	asmbl_27468	none	STRG.23873.4	1	STRG.23873.1,STRG.23873.2,STRG.23873.3,Trinity_GG_13318_c0_g1_i2,blat.proc3825160.chain_1023	5
scaffold_10	starts_in_intron	635702	635702	-	asmbl_3972,asmbl_3975	none	blat.proc3825154.chain_482,blat.proc3825154.chain_485	2	STRG.11945.1,blat.proc3825154.chain_484	2
scaffold_28	spliced_intron	7234548	7235090	+	asmbl_37643	none	STRG.29785.1,blat.proc3825178.chain_2930	2	STRG.29785.2,Trinity_GG_33804_c1_g1_i1,blat.proc3825178.chain_2931,blat.proc3825178.chain_2933	4
scaffold_9	alt_acceptor	8929679	8929680	+	asmbl_54182	none	STRG.11279.3	1	STRG.11279.2	1
scaffold_1	alternate_exon	14075901	14076046	+	asmbl_2332	none	Trinity_GG_17903_c0_g1_i4,blat.proc3825164.chain_1139	2	STRG.1003.2,blat.proc3825164.chain_1136,blat.proc3825164.chain_1137	3
scaffold_6	retained_intron	4826646	4826724	-	asmbl_48358	none	blat.proc3825150.chain_3610	1	STRG.7457.1,blat.proc3825150.chain_3609	2
scaffold_11	alternate_exon	11783655	11783918	+	asmbl_5997	none	STRG.14099.2	1	STRG.14099.1,STRG.14099.3	2
scaffold_21	spliced_intron	1657218	1657472	+	asmbl_28346,asmbl_28347,asmbl_28348,asmbl_28349,asmbl_28350	none	STRG.23819.1,Trinity_GG_30526_c0_g1_i11,Trinity_GG_30526_c0_g1_i12,Trinity_GG_30526_c0_g1_i4,Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1057,blat.proc3825176.chain_1059,blat.proc3825176.chain_1060,blat.proc3825176.chain_1061	10	blat.proc3825176.chain_1055,blat.proc3825176.chain_1058	2
scaffold_2	spliced_intron	6640625	6640693	-	asmbl_23212,asmbl_23213,asmbl_23214,asmbl_23217,asmbl_23218	none	STRG.2030.1,STRG.2030.2,STRG.2030.3,blat.proc3825148.chain_2032,blat.proc3825148.chain_2034,blat.proc3825148.chain_2037	6	blat.proc3825148.chain_2033	1
scaffold_20	alternate_exon	5549488	5549561	-	asmbl_25772	none	STRG.23182.4,blat.proc3825160.chain_219	2	STRG.23182.1,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216,blat.proc3825160.chain_217	7
scaffold_6	alt_donor	1497143	1497144	+	asmbl_46710	none	STRG.7191.2,blat.proc3825166.chain_3406	2	STRG.7191.3,Trinity_GG_21281_c0_g1_i2,blat.proc3825166.chain_3405	3
scaffold_13	alt_acceptor	5551861	5551862	+	asmbl_10871	none	STRG.15856.1,blat.proc3825172.chain_587	2	blat.proc3825172.chain_588	1
scaffold_1	skipped_exon	22371258	22372255	+	asmbl_2690,asmbl_2691	none	STRG.1491.3,STRG.1491.4	2	STRG.1491.1,STRG.1491.2,STRG.1491.5	3
scaffold_22	starts_in_intron	6124092	6124092	+	asmbl_30096,asmbl_30105,asmbl_30107	none	Trinity_GG_31147_c1_g1_i1,Trinity_GG_31147_c1_g1_i4,Trinity_GG_31147_c1_g1_i7,blat.proc3825176.chain_2125,blat.proc3825176.chain_2130	5	STRG.24968.1,STRG.24968.2,STRG.24968.3,Trinity_GG_31147_c1_g1_i3,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2128,blat.proc3825176.chain_2132	7
scaffold_13	alternate_exon	10001426	10001704	-	asmbl_10049	none	STRG.16241.3,blat.proc3825156.chain_1093	2	STRG.16241.1,STRG.16241.2,blat.proc3825156.chain_1094,blat.proc3825156.chain_1095	4
scaffold_14	retained_intron	2263195	2263335	-	asmbl_12930	none	blat.proc3825156.chain_1657	1	STRG.16838.1,blat.proc3825156.chain_1656	2
scaffold_20	retained_intron	1469067	1469176	-	asmbl_25571	none	STRG.22868.4,Trinity_GG_12770_c0_g1_i3,blat.proc3825158.chain_3733	3	STRG.22868.1,STRG.22868.2,STRG.22868.3,blat.proc3825158.chain_3734,blat.proc3825158.chain_3735	5
scaffold_25	alternate_exon	7320859	7322410	-	asmbl_34396	none	STRG.27581.1	1	blat.proc3825178.chain_653	1
scaffold_14	starts_in_intron	6986943	6986943	-	asmbl_13171	none	blat.proc3825156.chain_1954	1	STRG.17138.1,blat.proc3825156.chain_1952,blat.proc3825156.chain_1953	3
scaffold_5	alternate_exon	1180596	1180742	-	asmbl_43829	none	STRG.5668.1	1	STRG.5668.2,blat.proc3825150.chain_1938	2
scaffold_22	alternate_exon	4361579	4362977	+	asmbl_29993	none	STRG.24855.2	1	Trinity_GG_31043_c1_g1_i2,blat.proc3825176.chain_1943	2
scaffold_2	retained_exon	14342901	14343035	-	asmbl_23595	none	STRG.2436.1,blat.proc3825148.chain_2419	2	blat.proc3825148.chain_2418	1
scaffold_13	ends_in_intron	3085297	3085297	+	asmbl_10658	none	STRG.15621.3,blat.proc3825172.chain_373	2	STRG.15621.1,STRG.15621.2,blat.proc3825172.chain_370,blat.proc3825172.chain_372	4
scaffold_8	retained_exon	11830678	11830719	+	asmbl_53272,asmbl_53274	none	STRG.10387.2,blat.proc3825168.chain_2982	2	STRG.10387.1	1
scaffold_19	starts_in_intron	13145498	13145498	+	asmbl_21857	none	Trinity_GG_29799_c0_g1_i3,blat.proc3825174.chain_3609	2	STRG.22635.1,STRG.22635.2,Trinity_GG_29799_c0_g1_i1,blat.proc3825174.chain_3607,blat.proc3825174.chain_3608	5
scaffold_12	ends_in_intron	13390134	13390134	-	asmbl_8942,asmbl_8943,asmbl_8945,asmbl_8949	none	STRG.15219.3,STRG.15219.4,STRG.15219.5,blat.proc3825156.chain_5,blat.proc3825156.chain_6,blat.proc3825156.chain_7	6	STRG.15219.1,STRG.15219.2,blat.proc3825156.chain_8	3
scaffold_4	alt_donor	18291791	18291792	+	asmbl_42094,asmbl_42095	none	STRG.5428.2,STRG.5428.5,blat.proc3825166.chain_1745	3	STRG.5428.1,STRG.5428.4,blat.proc3825166.chain_1743,blat.proc3825166.chain_1744	4
scaffold_28	retained_intron	5611496	5611679	-	asmbl_38298,asmbl_38299,asmbl_38300,asmbl_38303,asmbl_38304	none	STRG.29697.2,STRG.29697.3,STRG.29697.4,STRG.29697.5,Trinity_GG_16664_c0_g1_i1,Trinity_GG_16664_c0_g1_i6,Trinity_GG_16664_c0_g1_i8,blat.proc3825162.chain_2898,blat.proc3825162.chain_2900,blat.proc3825162.chain_2901,blat.proc3825162.chain_2902	11	STRG.29697.1,STRG.29697.6,Trinity_GG_16664_c0_g1_i9,blat.proc3825162.chain_2897,blat.proc3825162.chain_2899	5
scaffold_12	retained_exon	10605600	10605683	+	asmbl_7947	none	STRG.15036.4	1	STRG.15036.2,STRG.15036.3,blat.proc3825170.chain_3576,blat.proc3825170.chain_3580	4
scaffold_17	alt_acceptor	20552	20553	+	asmbl_18536	none	STRG.19895.2	1	STRG.19895.1,blat.proc3825174.chain_779	2
scaffold_5	skipped_exon	18391820	18392095	-	asmbl_44837	none	STRG.6974.2,blat.proc3825150.chain_3088	2	STRG.6974.1	1
scaffold_8	alternate_exon	14431683	14435230	+	asmbl_53369,asmbl_53372	none	STRG.10530.1,blat.proc3825168.chain_3099,blat.proc3825168.chain_3100	3	STRG.10530.2	1
scaffold_26	alternate_exon	9842484	9842586	-	asmbl_35796,asmbl_35797	none	STRG.28545.2,Trinity_GG_15923_c0_g1_i4,blat.proc3825162.chain_1673	3	STRG.28545.3,Trinity_GG_15923_c0_g1_i3,blat.proc3825162.chain_1674	3
scaffold_9	starts_in_intron	13949976	13949976	-	asmbl_55467	none	blat.proc3825154.chain_91	1	STRG.11661.1,blat.proc3825154.chain_89,blat.proc3825154.chain_90	3
scaffold_21	alt_acceptor	9925341	9925342	-	asmbl_27991	none	STRG.24461.4	1	STRG.24461.1,STRG.24461.3,STRG.24461.5,blat.proc3825160.chain_1641	4
scaffold_5	starts_in_intron	1249337	1249337	-	asmbl_43845	none	blat.proc3825150.chain_1931	1	STRG.5688.1,blat.proc3825150.chain_1932,blat.proc3825150.chain_1933	3
scaffold_14	starts_in_intron	4207175	4207175	+	asmbl_11986	none	Trinity_GG_26655_c0_g1_i1,blat.proc3825172.chain_1754	2	STRG.16975.1	1
scaffold_14	alt_acceptor	11139409	11139410	-	asmbl_13447	none	STRG.17450.3,blat.proc3825156.chain_2248	2	blat.proc3825156.chain_2250	1
scaffold_1	alt_acceptor	14626397	14626398	+	asmbl_2411	none	STRG.1064.2	1	STRG.1064.1,blat.proc3825164.chain_1234,blat.proc3825164.chain_1235	3
scaffold_3	ends_in_intron	7286533	7286533	-	asmbl_38964	none	blat.proc3825148.chain_3217	1	STRG.3330.1,STRG.3330.2,STRG.3330.3,blat.proc3825148.chain_3214,blat.proc3825148.chain_3215,blat.proc3825148.chain_3216	6
scaffold_10	skipped_exon	6672572	6673240	-	asmbl_4487,asmbl_4488	none	blat.proc3825154.chain_1063,blat.proc3825154.chain_1064	2	blat.proc3825154.chain_1067	1
scaffold_3	ends_in_intron	16296970	16296970	+	asmbl_40617	none	blat.proc3825166.chain_339	1	STRG.3906.1,blat.proc3825166.chain_338	2
scaffold_1	alternate_exon	18742564	18743131	-	asmbl_1125	none	STRG.1306.2	1	STRG.1306.1	1
scaffold_17	alt_donor	2768330	2768331	-	asmbl_17785	none	STRG.20085.1,blat.proc3825158.chain_1126	2	STRG.20085.2	1
scaffold_15	spliced_intron	6104285	6104570	-	asmbl_14243	none	STRG.18273.1,blat.proc3825156.chain_3140,blat.proc3825156.chain_3141	3	Trinity_GG_10288_c0_g1_i2,blat.proc3825156.chain_3142	2
scaffold_24	retained_intron	9121547	9121613	+	asmbl_32518	none	blat.proc3825178.chain_98	1	STRG.26939.2,blat.proc3825178.chain_97	2
scaffold_22	retained_intron	7893263	7893360	-	asmbl_29436	none	STRG.25146.2,blat.proc3825160.chain_2306	2	STRG.25146.1	1
scaffold_26	retained_intron	5562155	5562324	+	asmbl_35021	none	STRG.28266.3	1	STRG.28266.4	1
scaffold_6	retained_exon	3041413	3042317	-	asmbl_48219	none	STRG.7310.3,blat.proc3825150.chain_3456	2	STRG.7310.1,blat.proc3825150.chain_3457	2
scaffold_18	spliced_intron	9258671	9259564	-	asmbl_20060	none	STRG.21569.4,Trinity_GG_12060_c0_g1_i3,blat.proc3825158.chain_2486	3	STRG.21569.3	1
scaffold_20	retained_intron	10384754	10384960	+	asmbl_26958	none	blat.proc3825176.chain_672	1	STRG.23583.4,blat.proc3825176.chain_668	2
scaffold_5	alternate_exon	12472769	12477612	-	asmbl_44455	none	STRG.6488.1,blat.proc3825150.chain_2681	2	STRG.6488.2,blat.proc3825150.chain_2680	2
scaffold_14	starts_in_intron	12754794	12754794	-	asmbl_13597	none	STRG.17591.3	1	STRG.17591.1,STRG.17591.2,blat.proc3825156.chain_2474,blat.proc3825156.chain_2475,blat.proc3825156.chain_2476	5
scaffold_9	alt_donor	6274070	6274071	+	asmbl_54080	none	blat.proc3825168.chain_3668	1	STRG.11169.1,blat.proc3825168.chain_3669	2
scaffold_1	retained_intron	10414454	10414944	-	asmbl_584	none	STRG.678.3,blat.proc3825148.chain_717	2	STRG.678.1,blat.proc3825148.chain_716	2
scaffold_15	starts_in_intron	15436352	15436352	-	asmbl_14782,asmbl_14786	none	STRG.18932.1,blat.proc3825156.chain_3731,blat.proc3825156.chain_3732	3	STRG.18932.2,STRG.18932.3,blat.proc3825156.chain_3727,blat.proc3825156.chain_3728,blat.proc3825156.chain_3729,blat.proc3825156.chain_3733	6
scaffold_16	starts_in_intron	8027051	8027051	-	asmbl_17215	none	Trinity_GG_10921_c0_g1_i2,blat.proc3825158.chain_593	2	STRG.19442.1,STRG.19442.2,Trinity_GG_10921_c0_g2_i1,blat.proc3825158.chain_594,blat.proc3825158.chain_595,blat.proc3825158.chain_596	6
scaffold_10	alt_donor	6324135	6324136	-	asmbl_4449	none	STRG.12462.3	1	STRG.12462.1,STRG.12462.2,blat.proc3825154.chain_997,blat.proc3825154.chain_998	4
scaffold_8	alt_acceptor	3102132	3102133	-	asmbl_51733	none	STRG.9828.2	1	STRG.9828.1,blat.proc3825152.chain_2114,blat.proc3825152.chain_2115	3
scaffold_7	starts_in_intron	15227656	15227656	+	asmbl_50417	none	blat.proc3825168.chain_2054	1	STRG.9539.1,STRG.9539.2,blat.proc3825168.chain_2053	3
scaffold_24	alt_acceptor	4327675	4327676	+	asmbl_32193	none	STRG.26597.1	1	STRG.26597.2	1
scaffold_4	alt_acceptor	16317732	16317733	+	asmbl_41965	none	STRG.5200.4	1	STRG.5200.1,STRG.5200.2,STRG.5200.3,blat.proc3825166.chain_1499,blat.proc3825166.chain_1501	5
scaffold_2	alternate_exon	15508154	15508442	-	asmbl_23639	none	blat.proc3825148.chain_2504	1	blat.proc3825148.chain_2501	1
scaffold_14	starts_in_intron	14309494	14309494	+	asmbl_12534	none	Trinity_GG_27019_c0_g1_i1,blat.proc3825172.chain_2383	2	STRG.17688.1,blat.proc3825172.chain_2382	2
scaffold_10	spliced_intron	2777398	2777531	+	asmbl_3013	none	STRG.12098.1,blat.proc3825170.chain_852	2	STRG.12098.2,blat.proc3825170.chain_851	2
scaffold_5	starts_in_intron	4537688	4537688	+	asmbl_45271,asmbl_45272	none	blat.proc3825166.chain_2038,blat.proc3825166.chain_2040	2	STRG.5908.1,blat.proc3825166.chain_2039	2
scaffold_10	alt_donor	13002218	13002219	+	asmbl_3572	none	STRG.12909.2,blat.proc3825170.chain_1525	2	STRG.12909.3,blat.proc3825170.chain_1526	2
scaffold_25	spliced_intron	6324770	6324860	-	asmbl_34356,asmbl_34357,asmbl_34359,asmbl_34360	none	STRG.27519.1,STRG.27519.2,blat.proc3825162.chain_938,blat.proc3825162.chain_940,blat.proc3825162.chain_942,blat.proc3825162.chain_943	6	blat.proc3825162.chain_939,blat.proc3825162.chain_941	2
scaffold_19	alternate_exon	7583240	7583377	+	asmbl_21479	none	blat.proc3825174.chain_3240	1	STRG.22236.1,STRG.22236.2,Trinity_GG_29596_c1_g1_i2,blat.proc3825174.chain_3233,blat.proc3825174.chain_3235,blat.proc3825174.chain_3236,blat.proc3825174.chain_3239	7
scaffold_1	retained_intron	20989024	20989300	+	asmbl_2669	none	STRG.1435.1,Trinity_GG_18143_c0_g1_i1,blat.proc3825164.chain_1564	3	blat.proc3825164.chain_1566	1
scaffold_5	starts_in_intron	10358539	10358539	-	asmbl_44346	none	blat.proc3825150.chain_2524	1	STRG.6335.1,blat.proc3825150.chain_2525	2
scaffold_5	alt_acceptor	10539169	10539170	-	asmbl_44365,asmbl_44368	none	STRG.6340.3,STRG.6340.4,blat.proc3825150.chain_2538	3	STRG.6340.1,Trinity_GG_3563_c0_g1_i4,Trinity_GG_3563_c0_g1_i7,blat.proc3825150.chain_2535,blat.proc3825150.chain_2537	5
scaffold_15	starts_in_intron	4959953	4959953	+	asmbl_15175	none	Trinity_GG_27299_c2_g1_i1,blat.proc3825172.chain_2897	2	STRG.18207.1,STRG.18207.2,blat.proc3825172.chain_2889,blat.proc3825172.chain_2890,blat.proc3825172.chain_2894	5
scaffold_21	spliced_intron	5536873	5536964	-	asmbl_27673,asmbl_27674,asmbl_27675,asmbl_27676	none	STRG.24086.1,STRG.24086.2,blat.proc3825160.chain_1271,blat.proc3825160.chain_1275,blat.proc3825160.chain_1277	5	Trinity_GG_13445_c0_g1_i9,blat.proc3825160.chain_1274	2
scaffold_28	alt_acceptor	3745701	3745702	-	asmbl_38161,asmbl_38162,asmbl_38163,asmbl_38166	none	STRG.29587.1,blat.proc3825162.chain_2740	2	STRG.29587.2,STRG.29587.3,STRG.29587.4	3
scaffold_3	alternate_exon	3251768	3251992	+	asmbl_39946,asmbl_39948	none	STRG.3072.4,STRG.3072.5	2	STRG.3072.2,STRG.3072.6	2
scaffold_9	alt_acceptor	656089	656090	+	asmbl_53790	none	STRG.10802.1,blat.proc3825168.chain_3350	2	STRG.10802.2,blat.proc3825168.chain_3349	2
scaffold_18	alt_acceptor	4124741	4124742	+	asmbl_20498,asmbl_20500	none	STRG.21212.2,STRG.21212.3,Trinity_GG_28938_c0_g1_i2,blat.proc3825174.chain_2069	4	STRG.21212.1,Trinity_GG_28938_c0_g1_i1,Trinity_GG_28938_c0_g1_i3,blat.proc3825174.chain_2070,blat.proc3825174.chain_2071	5
scaffold_21	retained_intron	7426114	7426200	-	asmbl_27807,asmbl_27808,asmbl_27809,asmbl_27811	none	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1445,blat.proc3825160.chain_1448	5	blat.proc3825160.chain_1446,blat.proc3825160.chain_1447	2
scaffold_9	spliced_intron	16561348	16563669	-	asmbl_55583,asmbl_55585,asmbl_55586	none	STRG.11806.1,STRG.11806.5,blat.proc3825154.chain_266,blat.proc3825154.chain_270,blat.proc3825154.chain_271	5	STRG.11806.6,Trinity_GG_6524_c1_g1_i1,blat.proc3825154.chain_277	3
scaffold_4	spliced_intron	17805603	17805997	+	asmbl_42076	none	blat.proc3825166.chain_1697	1	blat.proc3825166.chain_1695	1
scaffold_27	alt_donor	2694883	2694884	-	asmbl_36844	none	STRG.28746.1,blat.proc3825162.chain_2000	2	STRG.28746.2	1
scaffold_2	skipped_exon	14136270	14137059	-	asmbl_23560	none	blat.proc3825148.chain_2403	1	STRG.2408.1,STRG.2408.3,blat.proc3825148.chain_2401,blat.proc3825148.chain_2402	4
scaffold_24	alt_donor	10479732	10479733	+	asmbl_32564,asmbl_32565,asmbl_32568,asmbl_32569	none	STRG.27018.2,STRG.27018.3,STRG.27018.4,blat.proc3825178.chain_204,blat.proc3825178.chain_206	5	STRG.27018.1,blat.proc3825178.chain_205	2
scaffold_20	retained_exon	1618621	1619133	-	asmbl_25591	none	STRG.22893.1	1	STRG.22893.3	1
scaffold_12	spliced_intron	14045126	14045229	-	asmbl_8962,asmbl_8964	none	STRG.15234.2,blat.proc3825156.chain_39	2	STRG.15234.3,blat.proc3825156.chain_40	2
scaffold_13	alt_donor	11981347	11981348	-	asmbl_10118	none	STRG.16331.1	1	blat.proc3825156.chain_1205	1
scaffold_26	starts_in_intron	4529300	4529300	-	asmbl_35558	none	blat.proc3825162.chain_1430	1	blat.proc3825162.chain_1429	1
scaffold_12	retained_intron	14173452	14173745	+	asmbl_8064,asmbl_8065,asmbl_8066	none	STRG.15252.1,STRG.15252.2,Trinity_GG_25713_c0_g1_i9,blat.proc3825172.chain_3,blat.proc3825172.chain_5,blat.proc3825172.chain_6	6	blat.proc3825172.chain_4	1
scaffold_21	retained_intron	1054388	1054549	-	asmbl_27378	none	Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_926	2	STRG.23787.2,STRG.23787.3,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	4
scaffold_26	alt_acceptor	9847264	9847265	+	asmbl_35290	none	blat.proc3825178.chain_1574	1	STRG.28546.1,STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1575,blat.proc3825178.chain_1576,blat.proc3825178.chain_1577,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	12
scaffold_25	alt_acceptor	7927783	7927784	+	asmbl_33696	none	STRG.27621.2	1	STRG.27621.1,STRG.27621.3,Trinity_GG_32493_c0_g1_i1,Trinity_GG_32493_c0_g1_i2,blat.proc3825178.chain_643,blat.proc3825178.chain_644	6
scaffold_3	alternate_exon	17360610	17360689	-	asmbl_39545	none	STRG.3966.1,blat.proc3825150.chain_153	2	STRG.3966.2	1
scaffold_26	alternate_exon	3784387	3784850	-	asmbl_35501	none	STRG.28062.1,blat.proc3825162.chain_1358	2	blat.proc3825162.chain_1357	1
scaffold_20	spliced_intron	7473157	7473239	-	asmbl_25905,asmbl_25907,asmbl_25908,asmbl_25909,asmbl_25910,asmbl_25911,asmbl_25912	none	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_461,blat.proc3825160.chain_462,blat.proc3825160.chain_463,blat.proc3825160.chain_465,blat.proc3825160.chain_466,blat.proc3825160.chain_467	8	blat.proc3825160.chain_459	1
scaffold_2	retained_exon	14734586	14734648	+	asmbl_24973,asmbl_24980	none	STRG.2475.2,blat.proc3825164.chain_2626,blat.proc3825164.chain_2630	3	STRG.2475.1,blat.proc3825164.chain_2627,blat.proc3825164.chain_2632	3
scaffold_8	ends_in_intron	6161595	6161595	-	asmbl_51863	none	Trinity_GG_5581_c3_g1_i1,blat.proc3825152.chain_2278	2	STRG.10030.1,STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	10
scaffold_16	alt_acceptor	433763	433764	-	asmbl_16874	none	blat.proc3825158.chain_200	1	STRG.19041.1,blat.proc3825158.chain_196,blat.proc3825158.chain_203	3
scaffold_20	retained_intron	11743342	11743680	-	asmbl_26194	none	blat.proc3825160.chain_782	1	STRG.23685.1,blat.proc3825160.chain_780	2
scaffold_20	alt_acceptor	7144577	7144578	-	asmbl_25880	none	STRG.23280.1	1	blat.proc3825176.chain_450	1
scaffold_17	starts_in_intron	9240431	9240431	+	asmbl_19073	none	Trinity_GG_28574_c0_g1_i1,blat.proc3825174.chain_1422	2	STRG.20548.1,STRG.20548.2,Trinity_GG_28574_c0_g1_i2,Trinity_GG_28574_c0_g1_i3,blat.proc3825174.chain_1421,blat.proc3825174.chain_1423	6
scaffold_13	alt_acceptor	400122	400123	-	asmbl_9337,asmbl_9350	none	Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_368,blat.proc3825156.chain_369	3	Trinity_GG_8688_c0_g2_i3,blat.proc3825156.chain_371	2
scaffold_25	alt_donor	3293922	3293923	-	asmbl_34126	none	STRG.27284.7	1	STRG.27284.2,STRG.27284.3,STRG.27284.6,blat.proc3825162.chain_656,blat.proc3825162.chain_657,blat.proc3825162.chain_658	6
scaffold_28	spliced_intron	2265643	2266048	-	asmbl_38023,asmbl_38024,asmbl_38025,asmbl_38030	none	STRG.29401.1,STRG.29401.2,STRG.29401.3,blat.proc3825162.chain_2575,blat.proc3825162.chain_2577,blat.proc3825162.chain_2578,blat.proc3825162.chain_2579	7	blat.proc3825162.chain_2576	1
scaffold_2	alt_acceptor	16357876	16357877	+	asmbl_25122	none	blat.proc3825164.chain_2858	1	STRG.2575.1,STRG.2575.2,blat.proc3825164.chain_2859	3
scaffold_11	starts_in_intron	8077866	8077866	-	asmbl_6828	none	Trinity_GG_7709_c0_g1_i7,blat.proc3825154.chain_2327	2	STRG.13815.1,STRG.13815.2,STRG.13815.3,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i5,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2326,blat.proc3825154.chain_2330,blat.proc3825154.chain_2331,blat.proc3825154.chain_2332	13
scaffold_6	alt_acceptor	18837576	18837577	+	asmbl_47854,asmbl_47859	none	STRG.8556.6,blat.proc3825168.chain_960	2	STRG.8556.1,STRG.8556.2,STRG.8556.3,STRG.8556.4,STRG.8556.5,Trinity_GG_21987_c0_g1_i5,blat.proc3825168.chain_959,blat.proc3825168.chain_962,blat.proc3825168.chain_963	9
scaffold_10	alt_donor	3794613	3794614	-	asmbl_4231	none	STRG.12212.3	1	STRG.12212.1,blat.proc3825154.chain_782,blat.proc3825154.chain_783	3
scaffold_19	starts_in_intron	12075445	12075445	+	asmbl_21738	none	blat.proc3825174.chain_3494	1	STRG.22530.1,blat.proc3825174.chain_3492	2
scaffold_23	alternate_exon	2306388	2307212	+	asmbl_31385	none	STRG.25708.2,Trinity_GG_31502_c0_g1_i5,blat.proc3825176.chain_2662	3	STRG.25708.1,blat.proc3825176.chain_2660,blat.proc3825176.chain_2663	3
scaffold_1	retained_intron	952977	953543	+	asmbl_1446	none	Trinity_GG_17358_c0_g1_i1,blat.proc3825164.chain_158	2	STRG.50.1,blat.proc3825164.chain_160	2
scaffold_24	spliced_intron	7784554	7784674	-	asmbl_33062,asmbl_33063	none	blat.proc3825162.chain_212,blat.proc3825162.chain_213	2	blat.proc3825162.chain_211	1
scaffold_10	alt_donor	15426848	15426849	+	asmbl_3685	none	STRG.13064.3	1	STRG.13064.2	1
scaffold_3	spliced_intron	1841145	1841393	+	asmbl_39892	none	STRG.3005.1,blat.proc3825164.chain_3256	2	STRG.3005.2,Trinity_GG_19022_c1_g1_i1,blat.proc3825164.chain_3257	3
scaffold_17	spliced_intron	3988304	3988434	-	asmbl_17836,asmbl_17838	none	STRG.20158.2,STRG.20158.4	2	STRG.20158.3,blat.proc3825158.chain_1211	2
scaffold_10	alternate_exon	10602836	10602857	+	asmbl_3429	none	STRG.12752.1	1	blat.proc3825170.chain_1337	1
scaffold_25	alternate_exon	3687272	3687407	+	asmbl_33451	none	STRG.27315.2	1	STRG.27315.1	1
scaffold_5	spliced_intron	14125735	14126570	+	asmbl_45902	none	blat.proc3825166.chain_2776	1	Trinity_GG_20902_c3_g1_i1,blat.proc3825166.chain_2777	2
scaffold_25	alt_acceptor	7735301	7735302	+	asmbl_33677	none	STRG.27598.2	1	STRG.27598.1,blat.proc3825178.chain_679	2
scaffold_15	alt_donor	8637588	8637589	+	asmbl_15345	none	STRG.18414.1,Trinity_GG_27377_c0_g1_i2,blat.proc3825172.chain_3017	3	STRG.18414.2,Trinity_GG_27377_c0_g1_i1,blat.proc3825172.chain_3018	3
scaffold_2	spliced_intron	7324810	7325889	+	asmbl_24563	none	STRG.2062.3,Trinity_GG_18498_c0_g1_i1,blat.proc3825164.chain_2279	3	STRG.2062.1,Trinity_GG_18498_c0_g1_i4,blat.proc3825164.chain_2280	3
scaffold_19	retained_intron	8232992	8233161	+	asmbl_21504	none	blat.proc3825174.chain_3265	1	STRG.22282.1,Trinity_GG_29610_c0_g1_i1,blat.proc3825174.chain_3266	3
scaffold_20	alt_donor	1470057	1470058	-	asmbl_25571,asmbl_25572	none	STRG.22868.2,STRG.22868.4,blat.proc3825158.chain_3739	3	blat.proc3825158.chain_3738	1
scaffold_9	starts_in_intron	13305598	13305598	-	asmbl_55427	none	STRG.11631.3,blat.proc3825154.chain_71	2	STRG.11631.1,STRG.11631.2,blat.proc3825154.chain_72	3
scaffold_4	retained_intron	14680896	14681020	-	asmbl_43076	none	blat.proc3825150.chain_1228	1	STRG.5102.1,STRG.5102.2,blat.proc3825150.chain_1226	3
scaffold_26	alt_acceptor	6707719	6707720	-	asmbl_35696	none	STRG.28371.1,blat.proc3825162.chain_1604	2	STRG.28371.2	1
scaffold_4	retained_intron	4113774	4113870	-	asmbl_42488	none	blat.proc3825150.chain_480	1	blat.proc3825150.chain_479	1
scaffold_5	ends_in_intron	4596519	4596519	+	asmbl_45273,asmbl_45275	none	STRG.5907.2,Trinity_GG_20538_c0_g1_i2,blat.proc3825166.chain_2106,blat.proc3825166.chain_2109	4	STRG.5907.1,blat.proc3825166.chain_2110	2
scaffold_17	spliced_intron	8318266	8318617	+	asmbl_18964,asmbl_18965,asmbl_18967,asmbl_18968	none	STRG.20456.1,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1201,blat.proc3825174.chain_1202	6	blat.proc3825174.chain_1203,blat.proc3825174.chain_1205	2
scaffold_10	spliced_intron	8895156	8895317	-	asmbl_4621,asmbl_4622,asmbl_4624,asmbl_4626,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632,asmbl_4633	none	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1274	11	blat.proc3825154.chain_1273,blat.proc3825154.chain_1275	2
scaffold_15	alt_acceptor	15871124	15871125	+	asmbl_15835	none	STRG.18969.3	1	STRG.18969.1,STRG.18969.2,blat.proc3825172.chain_3546	3
scaffold_19	alt_acceptor	13154957	13154958	-	asmbl_22604,asmbl_22606	none	STRG.22639.2,blat.proc3825158.chain_3470,blat.proc3825158.chain_3471	3	STRG.22639.1,blat.proc3825158.chain_3472	2
scaffold_5	alternate_exon	11545561	11545608	+	asmbl_45746	none	STRG.6420.2	1	STRG.6420.1,blat.proc3825166.chain_2537	2
scaffold_10	spliced_intron	7282966	7283052	-	asmbl_4541,asmbl_4542	none	STRG.12546.1,STRG.12546.3,Trinity_GG_7012_c0_g1_i1,blat.proc3825154.chain_1128,blat.proc3825154.chain_1129	5	blat.proc3825154.chain_1130	1
scaffold_19	starts_in_intron	12317557	12317557	+	asmbl_21778	none	Trinity_GG_29791_c0_g1_i3,blat.proc3825174.chain_3585	2	STRG.22566.2,blat.proc3825174.chain_3583	2
scaffold_23	retained_intron	10213636	10214194	+	asmbl_31839,asmbl_31840	none	STRG.26229.2,Trinity_GG_31817_c0_g1_i3,blat.proc3825176.chain_3229,blat.proc3825176.chain_3230	4	STRG.26229.1,STRG.26229.3,blat.proc3825176.chain_3227,blat.proc3825176.chain_3231	4
scaffold_2	skipped_exon	18719948	18720912	+	asmbl_25237	none	STRG.2752.2	1	STRG.2752.1	1
scaffold_25	ends_in_intron	9448613	9448613	+	asmbl_33821	none	blat.proc3825178.chain_802	1	STRG.27758.1,STRG.27758.2,blat.proc3825178.chain_801,blat.proc3825178.chain_804	4
scaffold_1	spliced_intron	6297508	6297670	-	asmbl_347,asmbl_348,asmbl_349	none	STRG.427.1,STRG.427.2,STRG.427.3,blat.proc3825148.chain_325,blat.proc3825148.chain_327,blat.proc3825148.chain_330,blat.proc3825148.chain_331	7	blat.proc3825148.chain_328	1
scaffold_16	skipped_exon	14190504	14192190	-	asmbl_17440	none	STRG.19820.1,blat.proc3825158.chain_850	2	STRG.19820.2,STRG.19820.3,blat.proc3825158.chain_848,blat.proc3825158.chain_849	4
scaffold_14	starts_in_intron	6649165	6649165	-	asmbl_13144	none	Trinity_GG_9621_c2_g1_i1,blat.proc3825156.chain_1970	2	STRG.17124.1,STRG.17124.2,blat.proc3825156.chain_1966	3
scaffold_9	starts_in_intron	3846996	3846996	-	asmbl_54945	none	Trinity_GG_6096_c0_g1_i1	1	STRG.11008.1,blat.proc3825152.chain_3252	2
scaffold_18	alternate_exon	3915822	3920951	-	asmbl_19783,asmbl_19784,asmbl_19785,asmbl_19786	none	STRG.21203.2,STRG.21203.3,STRG.21203.4,STRG.21203.5	4	STRG.21203.1	1
scaffold_7	spliced_intron	5928824	5929865	+	asmbl_49828	none	STRG.8902.3,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1375	3	STRG.8902.1,STRG.8902.4,Trinity_GG_22209_c0_g1_i3,blat.proc3825168.chain_1373	4
scaffold_15	skipped_exon	15761181	15761965	+	asmbl_15818	none	STRG.18961.1,Trinity_GG_27708_c0_g1_i2,blat.proc3825172.chain_3631	3	STRG.18961.2,Trinity_GG_27708_c0_g1_i1,blat.proc3825172.chain_3630	3
scaffold_6	alt_acceptor	9152070	9152071	-	asmbl_48608,asmbl_48609	none	STRG.7792.1,blat.proc3825152.chain_167,blat.proc3825152.chain_168	3	STRG.7792.2,STRG.7792.3	2
scaffold_6	ends_in_intron	13005165	13005165	-	asmbl_48860	none	Trinity_GG_4595_c3_g1_i1,blat.proc3825152.chain_498	2	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,STRG.8068.5,STRG.8068.6,blat.proc3825152.chain_488,blat.proc3825152.chain_491,blat.proc3825152.chain_492,blat.proc3825152.chain_493,blat.proc3825152.chain_495,blat.proc3825152.chain_496	12
scaffold_1	retained_exon	10414945	10415039	-	asmbl_583	none	STRG.678.1,blat.proc3825148.chain_716	2	STRG.678.2,blat.proc3825148.chain_718	2
scaffold_27	starts_in_intron	2998993	2998993	+	asmbl_36159	none	blat.proc3825178.chain_1908	1	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	8
scaffold_20	starts_in_intron	1470370	1470370	-	asmbl_25575,asmbl_25577	none	blat.proc3825158.chain_3737,blat.proc3825158.chain_3740	2	STRG.22868.1,STRG.22868.2,STRG.22868.3,STRG.22868.4,blat.proc3825158.chain_3736,blat.proc3825158.chain_3738,blat.proc3825158.chain_3739	7
scaffold_25	alt_acceptor	9120067	9120068	+	asmbl_33782	none	STRG.27725.5	1	STRG.27725.3,STRG.27725.4,STRG.27725.6	3
scaffold_11	alt_donor	3796547	3796548	-	asmbl_6583	none	STRG.13500.1,blat.proc3825154.chain_2064	2	STRG.13500.2,blat.proc3825154.chain_2065	2
scaffold_10	alt_acceptor	6074390	6074391	-	asmbl_4422,asmbl_4423,asmbl_4427,asmbl_4428,asmbl_4429,asmbl_4431	none	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033	7	blat.proc3825154.chain_1034	1
scaffold_6	retained_intron	3779018	3779105	+	asmbl_46852	none	STRG.7375.2,blat.proc3825166.chain_3620,blat.proc3825166.chain_3624	3	STRG.7375.1,STRG.7375.3,blat.proc3825166.chain_3622,blat.proc3825166.chain_3623,blat.proc3825166.chain_3625,blat.proc3825166.chain_3627	6
scaffold_17	retained_exon	9530712	9531028	+	asmbl_19102	none	STRG.20578.1,Trinity_GG_28562_c0_g1_i8,blat.proc3825174.chain_1400	3	STRG.20578.2,Trinity_GG_28562_c0_g1_i2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1395,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	9
scaffold_16	retained_intron	11607412	11607538	+	asmbl_16588	none	STRG.19683.1,blat.proc3825174.chain_565	2	STRG.19683.2	1
scaffold_28	retained_exon	5391043	5391083	+	asmbl_37583,asmbl_37588	none	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,blat.proc3825178.chain_2869	4	Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868	2
scaffold_321	retained_intron	806	1026	+	asmbl_40961	none	STRG.30275.1	1	blat.proc3825178.chain_3373	1
scaffold_15	ends_in_intron	4095753	4095753	+	asmbl_15122	none	blat.proc3825172.chain_2818	1	STRG.18154.1,STRG.18154.2,blat.proc3825172.chain_2821,blat.proc3825172.chain_2822	4
scaffold_15	starts_in_intron	8419057	8419057	-	asmbl_14338	none	blat.proc3825156.chain_3239	1	STRG.18395.1	1
scaffold_15	starts_in_intron	2493074	2493074	+	asmbl_15059	none	blat.proc3825172.chain_2720	1	STRG.18031.1,STRG.18031.2,blat.proc3825172.chain_2721	3
scaffold_1	starts_in_intron	11426488	11426488	+	asmbl_2104	none	Trinity_GG_17781_c0_g1_i4,blat.proc3825164.chain_890	2	STRG.751.1,STRG.751.2,STRG.751.3,Trinity_GG_17781_c0_g1_i3,blat.proc3825164.chain_892,blat.proc3825164.chain_893,blat.proc3825164.chain_894	7
scaffold_17	retained_intron	13196844	13197082	-	asmbl_18363	none	blat.proc3825158.chain_1826	1	STRG.20817.3,blat.proc3825158.chain_1829	2
scaffold_16	ends_in_intron	8648806	8648806	+	asmbl_16442	none	blat.proc3825174.chain_416	1	STRG.19493.1,STRG.19493.2,STRG.19493.3,blat.proc3825174.chain_411,blat.proc3825174.chain_414,blat.proc3825174.chain_415	6
scaffold_4	starts_in_intron	17031293	17031293	+	asmbl_42025	none	blat.proc3825166.chain_1647	1	STRG.5301.2,STRG.5301.3,blat.proc3825166.chain_1650	3
scaffold_5	spliced_intron	1162909	1162938	+	asmbl_45115	none	STRG.5666.1	1	STRG.5666.2	1
scaffold_9	alt_acceptor	4899241	4899242	+	asmbl_53967,asmbl_53969	none	STRG.11064.1,blat.proc3825168.chain_3562	2	STRG.11064.2	1
scaffold_4	alt_donor	10911873	10911874	-	asmbl_42867,asmbl_42868	none	STRG.4811.2,STRG.4811.3	2	STRG.4811.1,blat.proc3825150.chain_956	2
scaffold_17	spliced_intron	4186382	4186960	-	asmbl_17841	none	STRG.20171.1,blat.proc3825158.chain_1219	2	STRG.20171.2,blat.proc3825158.chain_1221	2
scaffold_2	retained_intron	4788146	4788491	+	asmbl_24381,asmbl_24383	none	STRG.1899.2,STRG.1899.3,blat.proc3825164.chain_2022	3	STRG.1899.1,blat.proc3825164.chain_2023	2
scaffold_12	spliced_intron	6943917	6944472	-	asmbl_8547,asmbl_8548	none	STRG.14763.1,STRG.14763.2,blat.proc3825154.chain_3246	3	Trinity_GG_8221_c0_g1_i4,Trinity_GG_8241_c0_g1_i3,blat.proc3825154.chain_3245	3
scaffold_17	alternate_exon	11035476	11035759	-	asmbl_18265	none	STRG.20664.2	1	STRG.20664.1	1
scaffold_1	alt_acceptor	3681281	3681282	+	asmbl_1630	none	blat.proc3825164.chain_371	1	STRG.242.3	1
scaffold_2	retained_intron	8062385	8062907	+	asmbl_24610	none	Trinity_GG_18492_c1_g1_i1,blat.proc3825164.chain_2262	2	STRG.2102.1,blat.proc3825164.chain_2261	2
scaffold_2	alt_acceptor	5901425	5901426	-	asmbl_23162	none	STRG.1974.1,Trinity_GG_1069_c0_g1_i2,blat.proc3825148.chain_1909	3	STRG.1974.2,blat.proc3825148.chain_1908	2
scaffold_13	alternate_exon	9339619	9341204	+	asmbl_11198	none	STRG.16202.1	1	STRG.16202.2	1
scaffold_3	alternate_exon	13986481	13986762	-	asmbl_39319	none	blat.proc3825148.chain_3651	1	STRG.3742.2,blat.proc3825148.chain_3650	2
scaffold_5	starts_in_intron	6933630	6933630	+	asmbl_45464	none	Trinity_GG_20646_c0_g1_i3,blat.proc3825166.chain_2321	2	STRG.6107.1,blat.proc3825166.chain_2320,blat.proc3825166.chain_2322,blat.proc3825166.chain_2323	4
scaffold_7	starts_in_intron	10340203	10340203	-	asmbl_51119	none	blat.proc3825152.chain_1575	1	STRG.9215.1,STRG.9215.2,STRG.9215.3,Trinity_GG_5194_c0_g1_i1,blat.proc3825152.chain_1576	5
scaffold_10	alt_donor	6867770	6867771	-	asmbl_4510,asmbl_4511	none	blat.proc3825154.chain_1143,blat.proc3825154.chain_1145	2	STRG.12511.1,blat.proc3825154.chain_1142,blat.proc3825154.chain_1144,blat.proc3825154.chain_1147	4
scaffold_5	alt_donor	4687051	4687052	-	asmbl_43991	none	blat.proc3825150.chain_2082	1	STRG.5929.1,STRG.5929.4,Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2075,blat.proc3825150.chain_2077,blat.proc3825150.chain_2078,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084,blat.proc3825150.chain_2085	11
scaffold_3	alternate_exon	15787003	15787823	-	asmbl_39450	none	STRG.3859.3,Trinity_GG_2100_c2_g2_i1,blat.proc3825148.chain_3737	3	blat.proc3825148.chain_3732	1
scaffold_3	retained_exon	11645052	11645162	+	asmbl_40367	none	STRG.3597.1,blat.proc3825166.chain_65	2	blat.proc3825166.chain_66	1
scaffold_4	alt_donor	12571451	12571452	-	asmbl_42930	none	STRG.4898.1,blat.proc3825150.chain_1087	2	STRG.4898.2,blat.proc3825150.chain_1086	2
scaffold_28	ends_in_intron	4699868	4699868	+	asmbl_37542	none	Trinity_GG_33749_c1_g2_i1,blat.proc3825178.chain_2840	2	STRG.29641.1,STRG.29641.2,blat.proc3825178.chain_2839	3
scaffold_12	alternate_exon	2661590	2662179	+	asmbl_7509	none	blat.proc3825170.chain_3089	1	blat.proc3825170.chain_3083	1
scaffold_18	spliced_intron	7648011	7649078	+	asmbl_20756	none	STRG.21464.2	1	STRG.21464.1,Trinity_GG_29170_c0_g1_i2,Trinity_GG_29170_c0_g1_i3,blat.proc3825174.chain_2498,blat.proc3825174.chain_2499	5
scaffold_14	starts_in_intron	9292451	9292451	-	asmbl_13374	none	blat.proc3825156.chain_2173,blat.proc3825156.chain_2175	2	STRG.17341.1,STRG.17341.2,STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2172,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	12
scaffold_11	alt_donor	8597258	8597259	+	asmbl_5811,asmbl_5813	none	STRG.13876.3,blat.proc3825170.chain_2449	2	STRG.13876.1,STRG.13876.2,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i3,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2448	8
scaffold_5	alt_acceptor	939420	939421	-	asmbl_43794	none	STRG.5640.2	1	STRG.5640.3	1
scaffold_573	starts_in_intron	3789	3789	-	asmbl_46597	none	STRG.30382.1,blat.proc3825162.chain_3500	2	STRG.30382.2	1
scaffold_4	alt_acceptor	4112681	4112682	-	asmbl_42480	none	STRG.4317.1,blat.proc3825150.chain_476	2	STRG.4317.2,blat.proc3825150.chain_482	2
scaffold_2	starts_in_intron	14232018	14232018	-	asmbl_23589	none	STRG.2421.2	1	blat.proc3825148.chain_2420	1
scaffold_27	starts_in_intron	4756506	4756506	+	asmbl_36317	none	STRG.28914.3	1	STRG.28914.1,blat.proc3825178.chain_2151	2
scaffold_11	retained_intron	8716123	8716595	-	asmbl_6870	none	blat.proc3825154.chain_2441	1	STRG.13902.1,blat.proc3825154.chain_2437	2
scaffold_15	ends_in_intron	11304676	11304676	+	asmbl_15493,asmbl_15494	none	blat.proc3825172.chain_3162,blat.proc3825172.chain_3167	2	STRG.18603.1,blat.proc3825172.chain_3163,blat.proc3825172.chain_3165,blat.proc3825172.chain_3166	4
scaffold_18	alternate_exon	7508223	7508261	-	asmbl_19946	none	STRG.21452.2	1	STRG.21452.1	1
scaffold_25	retained_exon	3095696	3095836	-	asmbl_34090,asmbl_34092	none	STRG.27251.2,blat.proc3825162.chain_555	2	STRG.27251.3	1
scaffold_18	ends_in_intron	6433857	6433857	-	asmbl_19902	none	STRG.21371.2	1	STRG.21371.1,blat.proc3825158.chain_2312	2
scaffold_19	spliced_intron	8753361	8753725	+	asmbl_21548	none	blat.proc3825174.chain_3313	1	blat.proc3825174.chain_3314	1
scaffold_19	alternate_exon	11773813	11773852	+	asmbl_21719	none	STRG.22504.2,Trinity_GG_29756_c0_g1_i1,blat.proc3825174.chain_3516	3	STRG.22504.1,Trinity_GG_29756_c0_g1_i2,blat.proc3825174.chain_3515	3
scaffold_1	spliced_intron	6320286	6320404	-	asmbl_355,asmbl_357	none	STRG.429.1,blat.proc3825148.chain_334,blat.proc3825148.chain_335	3	blat.proc3825148.chain_336	1
scaffold_8	skipped_exon	12810394	12810817	-	asmbl_52233	none	STRG.10466.1,blat.proc3825152.chain_2685	2	STRG.10466.2,blat.proc3825152.chain_2687	2
scaffold_20	ends_in_intron	9621594	9621594	-	asmbl_26048	none	blat.proc3825160.chain_581	1	STRG.23500.1,blat.proc3825160.chain_579,blat.proc3825160.chain_580	3
scaffold_11	alt_acceptor	6139679	6139680	-	asmbl_6702	none	blat.proc3825154.chain_2226	1	STRG.13679.1,STRG.13679.2,blat.proc3825154.chain_2224,blat.proc3825154.chain_2225,blat.proc3825154.chain_2227	5
scaffold_14	starts_in_intron	13894154	13894154	-	asmbl_13660	none	STRG.17672.3,blat.proc3825156.chain_2446	2	STRG.17672.1,STRG.17672.2,blat.proc3825156.chain_2445,blat.proc3825156.chain_2448	4
scaffold_2	spliced_intron	14503777	14503884	+	asmbl_24939	none	STRG.2454.1,blat.proc3825164.chain_2711	2	blat.proc3825164.chain_2712	1
scaffold_5	alternate_exon	16291712	16291740	+	asmbl_46080	none	Trinity_GG_21041_c0_g1_i1	1	STRG.6827.2,STRG.6827.3,blat.proc3825166.chain_3001,blat.proc3825166.chain_3002	4
scaffold_2	spliced_intron	15270688	15270822	+	asmbl_25010,asmbl_25017,asmbl_25018,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	5	blat.proc3825164.chain_2614,blat.proc3825164.chain_2618	2
scaffold_7	alt_donor	15647495	15647496	+	asmbl_50457	none	STRG.9559.2,blat.proc3825168.chain_2092	2	STRG.9559.1,STRG.9559.3,blat.proc3825168.chain_2088,blat.proc3825168.chain_2089,blat.proc3825168.chain_2090	5
scaffold_16	ends_in_intron	11664474	11664474	+	asmbl_16594,asmbl_16595	none	STRG.19684.2,blat.proc3825174.chain_618	2	STRG.19684.1,blat.proc3825174.chain_619	2
scaffold_17	spliced_intron	14627703	14627832	-	asmbl_18437,asmbl_18439	none	STRG.20931.1,blat.proc3825158.chain_1902	2	STRG.20931.4,blat.proc3825158.chain_1899	2
scaffold_15	starts_in_intron	13654902	13654902	-	asmbl_14650	none	blat.proc3825156.chain_3646	1	STRG.18793.1,STRG.18793.3,blat.proc3825156.chain_3645	3
scaffold_6	skipped_exon	12520208	12521211	-	asmbl_48817	none	STRG.8011.3	1	STRG.8011.1,STRG.8011.2,STRG.8011.4,blat.proc3825152.chain_396,blat.proc3825152.chain_397,blat.proc3825152.chain_398	6
scaffold_12	alt_donor	10004419	10004420	-	asmbl_8714	none	STRG.14976.1	1	STRG.14976.3	1
scaffold_16	alt_donor	744374	744375	-	asmbl_16900,asmbl_16901	none	blat.proc3825158.chain_187,blat.proc3825158.chain_188	2	blat.proc3825158.chain_189	1
scaffold_8	starts_in_intron	9126232	9126232	-	asmbl_52006	none	blat.proc3825152.chain_2388	1	STRG.10172.1,STRG.10172.2,STRG.10172.3,STRG.10172.4,blat.proc3825152.chain_2387,blat.proc3825152.chain_2389	6
scaffold_14	alt_acceptor	7234267	7234268	-	asmbl_13180	none	STRG.17154.3,blat.proc3825156.chain_1950	2	STRG.17154.1,STRG.17154.2,blat.proc3825156.chain_1949	3
scaffold_22	ends_in_intron	3788676	3788676	-	asmbl_29186,asmbl_29188,asmbl_29189	none	STRG.24812.2,STRG.24812.3,blat.proc3825160.chain_1935	3	STRG.24812.1	1
scaffold_1	starts_in_intron	8633976	8633976	-	asmbl_462	none	blat.proc3825148.chain_544	1	STRG.571.2,STRG.571.3,Trinity_GG_304_c0_g1_i5,blat.proc3825148.chain_546,blat.proc3825148.chain_548	5
scaffold_19	retained_intron	13154957	13155027	-	asmbl_22607,asmbl_22608	none	STRG.22639.3,blat.proc3825158.chain_3473	2	STRG.22639.2,blat.proc3825158.chain_3470,blat.proc3825158.chain_3471	3
scaffold_20	alternate_exon	8255521	8256059	+	asmbl_26752	none	STRG.23369.1,Trinity_GG_30198_c0_g1_i1,blat.proc3825176.chain_515	3	STRG.23369.2	1
scaffold_5	starts_in_intron	3522579	3522579	-	asmbl_43914	none	STRG.5824.1	1	STRG.5824.2,Trinity_GG_3289_c0_g1_i2,blat.proc3825150.chain_2041	3
scaffold_18	ends_in_intron	4763351	4763351	+	asmbl_20556,asmbl_20558	none	Trinity_GG_29026_c1_g1_i2,Trinity_GG_29026_c1_g1_i3,blat.proc3825174.chain_2229,blat.proc3825174.chain_2232	4	STRG.21274.1	1
scaffold_18	ends_in_intron	4768248	4768248	+	asmbl_20554	none	STRG.21273.3	1	STRG.21273.1,STRG.21273.2,STRG.21273.4	3
scaffold_2	alt_acceptor	7993799	7993800	-	asmbl_23301	none	STRG.2091.2	1	STRG.2091.1	1
scaffold_14	alt_donor	8216522	8216523	-	asmbl_13257	none	STRG.17234.3	1	STRG.17234.1,STRG.17234.2,blat.proc3825156.chain_2055,blat.proc3825156.chain_2056,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	7
scaffold_7	alternate_exon	8172270	8173679	+	asmbl_49957	none	STRG.9049.3,Trinity_GG_22317_c0_g2_i2,blat.proc3825168.chain_1533	3	STRG.9049.2,blat.proc3825168.chain_1535	2
scaffold_23	alt_donor	7979594	7979595	-	asmbl_31069	none	STRG.26106.2	1	STRG.26106.1,blat.proc3825160.chain_3273	2
scaffold_7	retained_intron	12386811	12386906	-	asmbl_51205,asmbl_51208	none	blat.proc3825152.chain_1654,blat.proc3825152.chain_1658	2	STRG.9338.1,blat.proc3825152.chain_1659	2
scaffold_28	retained_exon	57850	57968	-	asmbl_37881,asmbl_37886,asmbl_37887	none	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2401,blat.proc3825162.chain_2402	4	blat.proc3825162.chain_2400	1
scaffold_5	spliced_intron	189945	189976	+	asmbl_45087	none	STRG.5587.1	1	STRG.5587.2,Trinity_GG_20359_c4_g1_i3,Trinity_GG_20359_c4_g1_i4,Trinity_GG_20359_c4_g1_i5,blat.proc3825166.chain_1850,blat.proc3825166.chain_1853	6
scaffold_18	retained_intron	5563424	5563617	-	asmbl_19854,asmbl_19856	none	STRG.21309.3,Trinity_GG_11924_c1_g1_i2,blat.proc3825158.chain_2236	3	STRG.21309.1,STRG.21309.2,Trinity_GG_11924_c1_g1_i1,Trinity_GG_11924_c1_g1_i6,Trinity_GG_11924_c1_g1_i8,blat.proc3825158.chain_2237,blat.proc3825158.chain_2239	7
scaffold_17	starts_in_intron	4185626	4185626	-	asmbl_17842	none	blat.proc3825158.chain_1218	1	STRG.20171.1,STRG.20171.2,blat.proc3825158.chain_1219,blat.proc3825158.chain_1220,blat.proc3825158.chain_1221	5
scaffold_6	skipped_exon	16595070	16596107	-	asmbl_49144	none	STRG.8385.1,blat.proc3825152.chain_770	2	STRG.8385.2,STRG.8385.3,blat.proc3825152.chain_772	3
scaffold_4	starts_in_intron	10448206	10448206	-	asmbl_42851	none	blat.proc3825150.chain_915	1	STRG.4796.1,STRG.4796.2,blat.proc3825150.chain_912,blat.proc3825150.chain_913,blat.proc3825150.chain_914,blat.proc3825150.chain_916	6
scaffold_10	spliced_intron	3159617	3159862	+	asmbl_3030,asmbl_3032	none	STRG.12147.1,blat.proc3825170.chain_878,blat.proc3825170.chain_880	3	STRG.12147.2,blat.proc3825170.chain_879	2
scaffold_16	alternate_exon	8715635	8716633	-	asmbl_17255	none	blat.proc3825158.chain_626	1	STRG.19504.2,STRG.19504.3,blat.proc3825158.chain_625,blat.proc3825158.chain_627	4
scaffold_10	alternate_exon	1165192	1165226	+	asmbl_2910	none	STRG.12004.1,blat.proc3825170.chain_743	2	STRG.12004.2,STRG.12004.3,blat.proc3825170.chain_745,blat.proc3825170.chain_746	4
scaffold_14	alt_donor	1094470	1094471	+	asmbl_11801	none	STRG.16769.2,blat.proc3825172.chain_1480	2	STRG.16769.1,blat.proc3825172.chain_1478	2
scaffold_2	alt_acceptor	884774	884775	+	asmbl_24126	none	STRG.1564.3	1	blat.proc3825164.chain_1623,blat.proc3825164.chain_1624	2
scaffold_9	starts_in_intron	5657768	5657768	+	asmbl_54057	none	Trinity_GG_23521_c0_g2_i1,blat.proc3825168.chain_3682	2	STRG.11134.1,STRG.11134.2,blat.proc3825168.chain_3680	3
scaffold_23	retained_intron	7005777	7005932	-	asmbl_31007	none	Trinity_GG_14528_c0_g1_i2,blat.proc3825160.chain_3122	2	STRG.26025.2	1
scaffold_20	starts_in_intron	5839608	5839608	+	asmbl_26634	none	blat.proc3825176.chain_372	1	STRG.23183.1,blat.proc3825176.chain_373,blat.proc3825176.chain_374	3
scaffold_20	skipped_exon	651340	653728	-	asmbl_25506	none	STRG.22768.1,blat.proc3825158.chain_3613	2	STRG.22768.2	1
scaffold_7	retained_exon	18394449	18394507	-	asmbl_51468,asmbl_51474	none	STRG.9670.1,Trinity_GG_5439_c0_g1_i12,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016	4	STRG.9670.2,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2021	9
scaffold_13	alt_acceptor	15372059	15372060	+	asmbl_11500,asmbl_11502	none	STRG.16584.1,STRG.16584.2	2	STRG.16584.3	1
scaffold_28	alternate_exon	5918670	5918761	+	asmbl_37611	none	STRG.29720.1	1	STRG.29720.2,STRG.29720.3,Trinity_GG_33778_c0_g1_i1,Trinity_GG_33778_c0_g1_i3,blat.proc3825178.chain_2888,blat.proc3825178.chain_2889	6
scaffold_22	alternate_exon	5934573	5935329	+	asmbl_30072	none	STRG.24944.1,Trinity_GG_31104_c2_g1_i1,blat.proc3825176.chain_2049	3	STRG.24944.2	1
scaffold_23	alternate_exon	757803	759360	-	asmbl_30603	none	STRG.25568.1,blat.proc3825160.chain_2711	2	Trinity_GG_14294_c0_g1_i2	1
scaffold_21	spliced_intron	6620794	6620944	+	asmbl_28679	none	STRG.24189.1	1	Trinity_GG_30735_c0_g1_i1,Trinity_GG_30735_c0_g1_i2,blat.proc3825176.chain_1431,blat.proc3825176.chain_1432	4
scaffold_3	starts_in_intron	3270321	3270321	-	asmbl_38762	none	blat.proc3825148.chain_2955	1	STRG.3073.1,STRG.3073.3,blat.proc3825148.chain_2950,blat.proc3825148.chain_2954	4
scaffold_20	alt_acceptor	1489803	1489804	+	asmbl_26415,asmbl_26416,asmbl_26419	none	STRG.22869.3,STRG.22869.4,STRG.22869.6	3	STRG.22869.2	1
scaffold_26	retained_intron	3591176	3591371	+	asmbl_34799	none	STRG.28041.1	1	blat.proc3825178.chain_1073	1
scaffold_22	alt_donor	11522903	11522904	+	asmbl_30400	none	STRG.25500.2,blat.proc3825176.chain_2485	2	STRG.25500.1,Trinity_GG_31383_c1_g1_i1,blat.proc3825176.chain_2486	3
scaffold_13	alt_donor	4508853	4508854	+	asmbl_10804	none	STRG.15778.2,blat.proc3825172.chain_503	2	STRG.15778.1,blat.proc3825172.chain_502	2
scaffold_25	retained_intron	4549453	4549681	-	asmbl_34211	none	STRG.27393.2	1	STRG.27393.1,blat.proc3825162.chain_737	2
scaffold_12	ends_in_intron	5641117	5641117	-	asmbl_8520	none	Trinity_GG_8224_c0_g1_i2,blat.proc3825154.chain_3249	2	STRG.14720.1,blat.proc3825154.chain_3250	2
scaffold_3	alt_donor	19886464	19886465	-	asmbl_39673	none	blat.proc3825150.chain_249	1	STRG.4100.1,STRG.4100.4,Trinity_GG_2243_c1_g1_i1,blat.proc3825150.chain_246	4
scaffold_17	alternate_exon	8569807	8569990	+	asmbl_18997	none	STRG.20468.1,Trinity_GG_28526_c0_g1_i1	2	STRG.20468.2,blat.proc3825174.chain_1314	2
scaffold_6	alt_acceptor	13201088	13201089	+	asmbl_47487	none	STRG.8079.1,blat.proc3825168.chain_593	2	blat.proc3825168.chain_594	1
scaffold_10	ends_in_intron	11108324	11108324	+	asmbl_3451	none	blat.proc3825170.chain_1379	1	STRG.12779.1,blat.proc3825170.chain_1378	2
scaffold_6	alt_donor	1740572	1740573	+	asmbl_46732	none	STRG.7229.1	1	blat.proc3825150.chain_3229,blat.proc3825150.chain_3232	2
scaffold_13	alternate_exon	16369152	16369364	-	asmbl_10297,asmbl_10298	none	STRG.16690.2,blat.proc3825156.chain_1484	2	STRG.16690.1,blat.proc3825156.chain_1483	2
scaffold_8	spliced_intron	10040800	10041129	-	asmbl_52091	none	STRG.10261.3,blat.proc3825152.chain_2485	2	STRG.10261.1,blat.proc3825152.chain_2483	2
scaffold_19	ends_in_intron	12986263	12986263	+	asmbl_21829	none	Trinity_GG_29824_c0_g1_i7,blat.proc3825174.chain_3658	2	Trinity_GG_29824_c0_g1_i2,blat.proc3825174.chain_3660	2
scaffold_10	starts_in_intron	11483832	11483832	+	asmbl_3461	none	STRG.12802.2	1	STRG.12802.1	1
scaffold_23	retained_intron	4311119	4313057	+	asmbl_31497	none	blat.proc3825176.chain_2776	1	STRG.25852.1,Trinity_GG_31566_c0_g1_i9,blat.proc3825176.chain_2772,blat.proc3825176.chain_2777,blat.proc3825176.chain_2779	5
scaffold_15	alt_acceptor	12009380	12009381	-	asmbl_14556	none	blat.proc3825156.chain_3540	1	STRG.18664.1,blat.proc3825156.chain_3538,blat.proc3825156.chain_3542	3
scaffold_15	alternate_exon	11144389	11148626	-	asmbl_14485,asmbl_14486	none	blat.proc3825156.chain_3383,blat.proc3825156.chain_3384	2	blat.proc3825156.chain_3380	1
scaffold_12	alt_acceptor	9234562	9234563	-	asmbl_8662,asmbl_8663,asmbl_8664,asmbl_8667,asmbl_8669,asmbl_8670	none	STRG.14939.1,STRG.14939.5,blat.proc3825154.chain_3447,blat.proc3825154.chain_3450,blat.proc3825154.chain_3451,blat.proc3825154.chain_3454,blat.proc3825154.chain_3456	7	STRG.14939.3,blat.proc3825154.chain_3455	2
scaffold_27	alternate_exon	973582	974473	+	asmbl_35972	none	Trinity_GG_33133_c0_g2_i1,blat.proc3825178.chain_1721	2	STRG.28595.4,Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	3
scaffold_12	spliced_intron	14184773	14185070	-	asmbl_8995,asmbl_8998,asmbl_8999	none	STRG.15259.1,STRG.15259.2,STRG.15259.3,blat.proc3825156.chain_61	4	blat.proc3825156.chain_62	1
scaffold_24	retained_intron	10778989	10779251	-	asmbl_33221	none	blat.proc3825162.chain_370	1	STRG.27043.1,blat.proc3825162.chain_367,blat.proc3825162.chain_368,blat.proc3825162.chain_369,blat.proc3825162.chain_371	5
scaffold_13	retained_intron	5804903	5805414	+	asmbl_10902	none	blat.proc3825172.chain_706	1	STRG.15896.1,STRG.15896.2	2
scaffold_26	retained_intron	6663635	6663720	+	asmbl_35102	none	STRG.28377.3,Trinity_GG_32974_c0_g1_i1,blat.proc3825178.chain_1423	3	STRG.28377.1,STRG.28377.2,blat.proc3825178.chain_1424	3
scaffold_3	alternate_exon	10630202	10632016	+	asmbl_40279	none	STRG.3513.1,blat.proc3825164.chain_3684	2	blat.proc3825164.chain_3683,blat.proc3825164.chain_3685	2
scaffold_2	alt_acceptor	15267919	15267920	+	asmbl_24996,asmbl_24997,asmbl_25000,asmbl_25002,asmbl_25003,asmbl_25004,asmbl_25005	none	STRG.2485.1,STRG.2485.2,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2604,blat.proc3825164.chain_2606,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	9	STRG.2485.3,blat.proc3825164.chain_2603,blat.proc3825164.chain_2605	3
scaffold_1	alternate_exon	3613545	3613589	-	asmbl_164	none	STRG.228.3,blat.proc3825148.chain_226	2	STRG.228.1,STRG.228.2,blat.proc3825148.chain_227,blat.proc3825148.chain_228	4
scaffold_18	spliced_intron	7509091	7509220	-	asmbl_19947,asmbl_19949	none	STRG.21447.1,Trinity_GG_11994_c0_g1_i1,Trinity_GG_11994_c0_g1_i3,blat.proc3825158.chain_2345,blat.proc3825158.chain_2346	5	Trinity_GG_11994_c0_g1_i2,blat.proc3825158.chain_2344	2
scaffold_2	ends_in_intron	4555697	4555697	-	asmbl_23083	none	Trinity_GG_1045_c1_g1_i1,blat.proc3825148.chain_1854	2	STRG.1881.2	1
scaffold_5	ends_in_intron	13789123	13789123	-	asmbl_44557	none	Trinity_GG_3706_c0_g2_i1,blat.proc3825150.chain_2789	2	STRG.6591.1	1
scaffold_9	retained_exon	6992555	6992588	+	asmbl_54119	none	STRG.11214.2,blat.proc3825168.chain_3697	2	STRG.11214.3,blat.proc3825168.chain_3698	2
scaffold_23	retained_intron	9951383	9951465	-	asmbl_31117	none	blat.proc3825160.chain_3298	1	STRG.26203.1,STRG.26203.2,STRG.26203.3,blat.proc3825160.chain_3297	4
scaffold_9	alternate_exon	13892560	13892765	-	asmbl_55452,asmbl_55453	none	STRG.11653.1,STRG.11653.3	2	STRG.11653.2,blat.proc3825154.chain_113	2
scaffold_1	ends_in_intron	16248776	16248776	+	asmbl_2473	none	Trinity_GG_18004_c0_g1_i3,blat.proc3825164.chain_1318	2	STRG.1135.1	1
scaffold_6	spliced_intron	19111383	19111555	+	asmbl_47877,asmbl_47878	none	STRG.8584.1,STRG.8584.3,Trinity_GG_22000_c0_g1_i3,blat.proc3825168.chain_988	4	STRG.8584.2,Trinity_GG_22000_c0_g1_i2,blat.proc3825168.chain_989	3
scaffold_7	ends_in_intron	8322530	8322530	-	asmbl_51003	none	Trinity_GG_5073_c1_g1_i2,blat.proc3825152.chain_1370	2	STRG.9070.4,blat.proc3825152.chain_1369,blat.proc3825152.chain_1371	3
scaffold_16	spliced_intron	8086575	8086765	-	asmbl_17225	none	STRG.19454.1,blat.proc3825158.chain_576	2	Trinity_GG_10909_c1_g1_i1,blat.proc3825158.chain_575	2
scaffold_4	retained_intron	16577833	16578010	+	asmbl_41976,asmbl_41979	none	Trinity_GG_20202_c0_g1_i5,blat.proc3825166.chain_1569,blat.proc3825166.chain_1572	3	STRG.5236.1,STRG.5236.2,blat.proc3825166.chain_1570,blat.proc3825166.chain_1573	4
scaffold_11	retained_intron	4744838	4745154	-	asmbl_6625	none	blat.proc3825154.chain_2164	1	STRG.13567.1,blat.proc3825154.chain_2165	2
scaffold_1	spliced_intron	11408932	11409031	+	asmbl_2098	none	STRG.750.1,Trinity_GG_17780_c0_g1_i1,blat.proc3825164.chain_888	3	Trinity_GG_17780_c0_g1_i2,blat.proc3825164.chain_889	2
scaffold_11	starts_in_intron	3853526	3853526	+	asmbl_5464	none	Trinity_GG_24731_c0_g1_i1,blat.proc3825170.chain_2040	2	STRG.13502.1,Trinity_GG_24731_c0_g1_i3,blat.proc3825170.chain_2038	3
scaffold_4	ends_in_intron	3340591	3340591	+	asmbl_41181	none	STRG.4263.2,Trinity_GG_19693_c0_g1_i1,blat.proc3825166.chain_732	3	STRG.4263.1,STRG.4263.3,Trinity_GG_19693_c0_g1_i2,blat.proc3825166.chain_733	4
scaffold_19	alt_acceptor	3684356	3684357	+	asmbl_21335	none	blat.proc3825174.chain_3084	1	STRG.22058.2,STRG.22058.3,STRG.22058.5	3
scaffold_16	alt_donor	14552936	14552937	+	asmbl_16689	none	Trinity_GG_28180_c0_g1_i4,blat.proc3825174.chain_733	2	STRG.19851.1,STRG.19851.2,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i3,blat.proc3825174.chain_729,blat.proc3825174.chain_730	6
scaffold_14	spliced_intron	583521	583652	+	asmbl_11771	none	STRG.16740.2	1	STRG.16740.1,STRG.16740.4,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	4
scaffold_11	spliced_intron	13462527	13462704	-	asmbl_7129,asmbl_7131	none	STRG.14207.2,STRG.14207.3,Trinity_GG_7945_c0_g1_i1,Trinity_GG_7945_c0_g1_i5,blat.proc3825154.chain_2747,blat.proc3825154.chain_2748	6	STRG.14207.1,Trinity_GG_7945_c0_g1_i4,blat.proc3825154.chain_2749	3
scaffold_14	starts_in_intron	10412087	10412087	-	asmbl_13420	none	blat.proc3825156.chain_2217	1	STRG.17395.1,STRG.17395.2	2
scaffold_28	alt_donor	816773	816774	-	asmbl_37939	none	STRG.29294.1,blat.proc3825162.chain_2459	2	blat.proc3825162.chain_2458	1
scaffold_15	alternate_exon	13311964	13312005	+	asmbl_15624	none	STRG.18763.1	1	STRG.18763.2,Trinity_GG_27611_c0_g1_i1,blat.proc3825172.chain_3414	3
scaffold_14	spliced_intron	8338998	8339359	-	asmbl_13288	none	STRG.17267.1,blat.proc3825156.chain_2081	2	blat.proc3825156.chain_2080	1
scaffold_15	retained_intron	2565306	2565577	-	asmbl_14023,asmbl_14025	none	STRG.18046.2,blat.proc3825156.chain_2864	2	STRG.18046.1,STRG.18046.3,blat.proc3825156.chain_2865,blat.proc3825156.chain_2866,blat.proc3825156.chain_2867	5
scaffold_1	spliced_intron	849802	849972	+	asmbl_1418	none	STRG.42.2,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_127	3	STRG.42.5,Trinity_GG_17343_c0_g1_i1,Trinity_GG_17343_c0_g1_i4,blat.proc3825164.chain_126,blat.proc3825164.chain_128	5
scaffold_6	ends_in_intron	8010260	8010260	-	asmbl_48526	none	STRG.7680.2	1	STRG.7680.1,blat.proc3825152.chain_20,blat.proc3825152.chain_21	3
scaffold_22	starts_in_intron	11401885	11401885	+	asmbl_30379	none	STRG.25474.2	1	STRG.25474.1,Trinity_GG_31374_c0_g1_i1,blat.proc3825176.chain_2467	3
scaffold_15	alternate_exon	10658089	10663014	-	asmbl_14438,asmbl_14443	none	STRG.18558.1,STRG.18558.4,blat.proc3825156.chain_3413	3	STRG.18558.2,blat.proc3825156.chain_3419	2
scaffold_25	alt_acceptor	7921248	7921249	-	asmbl_34418	none	STRG.27624.1	1	STRG.27624.2	1
scaffold_8	alt_donor	17454461	17454462	+	asmbl_53480	none	blat.proc3825168.chain_3161	1	STRG.10670.1,Trinity_GG_23215_c0_g1_i2,blat.proc3825168.chain_3163	3
scaffold_9	skipped_exon	3197498	3199171	+	asmbl_53882	none	STRG.10935.1,blat.proc3825168.chain_3408	2	STRG.10935.2,Trinity_GG_23358_c0_g1_i3,blat.proc3825168.chain_3407	3
scaffold_8	alt_acceptor	10793567	10793568	+	asmbl_53182	none	STRG.10305.3,blat.proc3825168.chain_2847	2	STRG.10305.2,blat.proc3825168.chain_2846	2
scaffold_2	alt_acceptor	13077503	13077504	-	asmbl_23488,asmbl_23489,asmbl_23490,asmbl_23491,asmbl_23493	none	STRG.2337.2,STRG.2337.3,STRG.2337.4,STRG.2337.5,blat.proc3825148.chain_2341,blat.proc3825148.chain_2342,blat.proc3825148.chain_2343	7	STRG.2337.1,blat.proc3825148.chain_2340,blat.proc3825148.chain_2345	3
scaffold_5	spliced_intron	5063957	5064056	-	asmbl_44027	none	STRG.5964.2,Trinity_GG_3315_c0_g1_i1,blat.proc3825150.chain_2089	3	Trinity_GG_3315_c0_g1_i2,blat.proc3825150.chain_2091	2
scaffold_19	starts_in_intron	1090403	1090403	-	asmbl_22022	none	blat.proc3825158.chain_2723	1	STRG.21894.1,blat.proc3825158.chain_2724	2
scaffold_13	retained_intron	4378784	4378885	+	asmbl_10784	none	Trinity_GG_25973_c0_g1_i3,blat.proc3825172.chain_501	2	STRG.15764.1,STRG.15764.2,STRG.15764.3,STRG.15764.4,STRG.15764.5	5
scaffold_22	alt_acceptor	11640269	11640270	-	asmbl_29687,asmbl_29688,asmbl_29690	none	STRG.25513.1,STRG.25513.2,STRG.25513.3,Trinity_GG_14246_c0_g1_i1,blat.proc3825160.chain_2631	5	STRG.25513.4	1
scaffold_20	spliced_intron	11383090	11383164	+	asmbl_27033	none	blat.proc3825176.chain_758	1	STRG.23648.1,STRG.23648.2,STRG.23648.3,STRG.23648.4,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i1,Trinity_GG_30352_c0_g1_i3,Trinity_GG_30352_c0_g1_i4,blat.proc3825176.chain_757,blat.proc3825176.chain_759,blat.proc3825176.chain_760	12
scaffold_22	retained_intron	224379	224570	-	asmbl_29074,asmbl_29078,asmbl_29080	none	STRG.24683.2,STRG.24683.3,blat.proc3825160.chain_1904,blat.proc3825160.chain_1907	4	STRG.24683.1,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1905,blat.proc3825160.chain_1908	5
scaffold_6	alt_donor	12002378	12002379	+	asmbl_47368	none	STRG.7971.3	1	STRG.7971.1,STRG.7971.2	2
scaffold_15	alt_donor	9054580	9054581	-	asmbl_14370	none	STRG.18459.2,blat.proc3825156.chain_3318	2	STRG.18459.3,Trinity_GG_10368_c2_g1_i1,blat.proc3825156.chain_3316,blat.proc3825156.chain_3325	4
scaffold_5	spliced_intron	15285942	15286100	-	asmbl_44658	none	STRG.6716.2,blat.proc3825150.chain_2911	2	STRG.6716.1,Trinity_GG_3775_c0_g1_i5,blat.proc3825150.chain_2909	3
scaffold_21	retained_intron	10990182	10990263	+	asmbl_28912	none	Trinity_GG_30865_c0_g1_i1,blat.proc3825176.chain_1649	2	STRG.24580.1	1
scaffold_3	retained_exon	2183328	2183412	-	asmbl_38733	none	blat.proc3825148.chain_2899,blat.proc3825178.chain_3398	2	STRG.3017.1,blat.proc3825148.chain_2898,blat.proc3825178.chain_3397	3
scaffold_7	ends_in_intron	6223234	6223234	+	asmbl_49856	none	STRG.8920.1,blat.proc3825168.chain_1414	2	STRG.8920.2,blat.proc3825168.chain_1415	2
scaffold_17	retained_exon	6370848	6371633	+	asmbl_18849	none	STRG.20317.1	1	STRG.20317.2	1
scaffold_359	alt_acceptor	2500	2501	+	asmbl_41045	none	blat.proc3825178.chain_3402	1	STRG.30302.1	1
scaffold_18	retained_intron	1901421	1904370	-	asmbl_19653	none	STRG.21081.10,Trinity_GG_11794_c2_g1_i1,blat.proc3825158.chain_2020,blat.proc3825158.chain_2022	4	STRG.21081.3,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	6
scaffold_11	retained_intron	1286462	1286567	-	asmbl_6421	none	blat.proc3825154.chain_1868	1	STRG.13318.1,blat.proc3825154.chain_1869,blat.proc3825154.chain_1870	3
scaffold_25	starts_in_intron	2962843	2962843	-	asmbl_34078	none	blat.proc3825162.chain_632	1	STRG.27246.1,blat.proc3825162.chain_631	2
scaffold_8	retained_intron	6321681	6321793	-	asmbl_51878	none	blat.proc3825152.chain_2323	1	STRG.10039.1	1
scaffold_16	spliced_intron	809774	810034	-	asmbl_16907,asmbl_16908,asmbl_16910,asmbl_16911,asmbl_16912	none	STRG.19064.1,STRG.19064.2,STRG.19064.3,blat.proc3825158.chain_128,blat.proc3825158.chain_130,blat.proc3825158.chain_131,blat.proc3825158.chain_132	7	blat.proc3825158.chain_129	1
scaffold_6	alt_donor	8010931	8010932	-	asmbl_48526	none	STRG.7680.2	1	STRG.7680.1,blat.proc3825152.chain_20,blat.proc3825152.chain_21	3
scaffold_14	starts_in_intron	1601844	1601844	-	asmbl_12906	none	Trinity_GG_9375_c0_g1_i4,blat.proc3825156.chain_1575	2	STRG.16803.1,STRG.16803.2,Trinity_GG_9375_c0_g1_i1,Trinity_GG_9375_c0_g1_i2,Trinity_GG_9375_c0_g1_i3,blat.proc3825156.chain_1573,blat.proc3825156.chain_1574,blat.proc3825156.chain_1576	8
scaffold_8	retained_exon	3490500	3490549	+	asmbl_52769,asmbl_52770	none	STRG.9846.2,blat.proc3825168.chain_2395	2	STRG.9846.1,blat.proc3825168.chain_2396	2
scaffold_4	alt_donor	16689690	16689691	+	asmbl_42000	none	STRG.5247.2,Trinity_GG_20201_c0_g1_i1,blat.proc3825166.chain_1566	3	STRG.5247.1	1
scaffold_4	retained_intron	16315868	16316019	+	asmbl_41961	none	STRG.5200.2,blat.proc3825166.chain_1499	2	STRG.5200.3,blat.proc3825166.chain_1502	2
scaffold_9	retained_exon	11794281	11794318	-	asmbl_55306,asmbl_55309	none	STRG.11496.1,blat.proc3825152.chain_3684,blat.proc3825152.chain_3686	3	STRG.11496.2,STRG.11496.4,blat.proc3825152.chain_3683	3
scaffold_7	starts_in_intron	17808396	17808396	+	asmbl_50501	none	blat.proc3825168.chain_2135	1	STRG.9628.1,blat.proc3825168.chain_2133,blat.proc3825168.chain_2134,blat.proc3825168.chain_2136	4
scaffold_12	retained_exon	4952498	4952570	-	asmbl_8467	none	STRG.14666.1,blat.proc3825154.chain_3103	2	STRG.14666.2,blat.proc3825154.chain_3104	2
scaffold_13	ends_in_intron	9237511	9237511	+	asmbl_11180	none	Trinity_GG_26194_c0_g2_i2,blat.proc3825172.chain_943	2	STRG.16182.1,STRG.16182.2,blat.proc3825172.chain_941,blat.proc3825172.chain_942	4
scaffold_25	retained_exon	3631293	3631774	+	asmbl_33436,asmbl_33437,asmbl_33440	none	STRG.27312.1,STRG.27312.2,blat.proc3825178.chain_426,blat.proc3825178.chain_427,blat.proc3825178.chain_429,blat.proc3825178.chain_432	6	STRG.27312.3,blat.proc3825178.chain_431	2
scaffold_23	retained_intron	9425520	9425631	+	asmbl_31793	none	STRG.26164.1,Trinity_GG_31776_c0_g1_i1,blat.proc3825176.chain_3142	3	STRG.26164.2,STRG.26164.3	2
scaffold_11	retained_intron	16755265	16755293	+	asmbl_6176	none	Trinity_GG_25225_c0_g1_i1,blat.proc3825170.chain_2899	2	STRG.14369.1	1
scaffold_19	alt_acceptor	13155009	13155010	-	asmbl_22605	none	STRG.22639.1,blat.proc3825158.chain_3472	2	STRG.22639.2,blat.proc3825158.chain_3470,blat.proc3825158.chain_3471,blat.proc3825158.chain_3473	4
scaffold_20	spliced_intron	1126444	1126470	-	asmbl_25543	none	blat.proc3825158.chain_3682	1	STRG.22825.1	1
scaffold_9	alt_acceptor	16569820	16569821	+	asmbl_54601	none	Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_614	2	Trinity_GG_23904_c0_g1_i18,blat.proc3825170.chain_613	2
scaffold_16	alt_donor	1878653	1878654	+	asmbl_16103	none	STRG.19108.2	1	STRG.19108.1	1
scaffold_156	alternate_exon	7018	7196	+	asmbl_15981	none	STRG.30199.2,blat.proc3825178.chain_3315	2	STRG.30199.1,blat.proc3825178.chain_3314	2
scaffold_3	alt_acceptor	6652986	6652987	+	asmbl_40098,asmbl_40099,asmbl_40100,asmbl_40101	none	STRG.3287.1,STRG.3287.2,Trinity_GG_19166_c0_g1_i1,blat.proc3825164.chain_3533,blat.proc3825164.chain_3534	5	STRG.3287.3	1
scaffold_22	spliced_intron	4788211	4788482	-	asmbl_29277	none	STRG.24901.2,blat.proc3825160.chain_2095	2	STRG.24901.1,blat.proc3825160.chain_2096	2
scaffold_27	spliced_intron	2436344	2436368	+	asmbl_36085	none	STRG.28717.1	1	blat.proc3825178.chain_1891	1
scaffold_6	spliced_intron	2479060	2479128	-	asmbl_48130	none	STRG.7245.2	1	Trinity_GG_4048_c0_g2_i1,blat.proc3825150.chain_3362	2
scaffold_12	alt_acceptor	14186288	14186289	-	asmbl_8998	none	STRG.15259.3	1	STRG.15259.1,STRG.15259.2,blat.proc3825156.chain_61,blat.proc3825156.chain_62	4
scaffold_2	retained_intron	898896	899000	+	asmbl_24148,asmbl_24151	none	STRG.1569.2,Trinity_GG_18211_c0_g1_i4,Trinity_GG_18211_c0_g1_i5,blat.proc3825164.chain_1718	4	STRG.1569.1,STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721,blat.proc3825164.chain_1722	6
scaffold_4	retained_intron	4113453	4113870	-	asmbl_42488	none	blat.proc3825150.chain_480	1	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_477,blat.proc3825150.chain_481,blat.proc3825150.chain_482	6
scaffold_12	alt_acceptor	7301396	7301397	-	asmbl_8570	none	STRG.14808.2,blat.proc3825154.chain_3319	2	STRG.14808.1,STRG.14808.3,blat.proc3825154.chain_3320	3
scaffold_12	starts_in_intron	4401514	4401514	-	asmbl_8393	none	STRG.14619.1,blat.proc3825154.chain_3001	2	STRG.14619.2	1
scaffold_19	spliced_intron	11484684	11484870	-	asmbl_22404,asmbl_22408,asmbl_22409,asmbl_22412,asmbl_22414	none	STRG.22486.1,STRG.22486.2,Trinity_GG_12512_c0_g1_i13,blat.proc3825158.chain_3240,blat.proc3825158.chain_3241,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247	7	Trinity_GG_12512_c0_g1_i4,blat.proc3825158.chain_3239,blat.proc3825158.chain_3248	3
scaffold_26	spliced_intron	10097149	10097583	-	asmbl_35811	none	STRG.28531.2	1	Trinity_GG_15947_c0_g1_i3,blat.proc3825162.chain_1716,blat.proc3825162.chain_1718	3
scaffold_14	alternate_exon	15115487	15115549	+	asmbl_12562	none	Trinity_GG_27062_c0_g1_i4,blat.proc3825172.chain_2453	2	blat.proc3825172.chain_2454	1
scaffold_17	ends_in_intron	1055693	1055693	-	asmbl_17670	none	Trinity_GG_11153_c1_g1_i1,blat.proc3825158.chain_935	2	STRG.19948.3,STRG.19948.4,STRG.19948.5,blat.proc3825158.chain_932,blat.proc3825158.chain_934	5
scaffold_10	retained_intron	13280730	13280885	+	asmbl_3588,asmbl_3589	none	Trinity_GG_24437_c0_g1_i1,Trinity_GG_24437_c0_g1_i2,blat.proc3825170.chain_1536,blat.proc3825170.chain_1537	4	STRG.12923.1	1
scaffold_8	retained_intron	7985872	7986129	-	asmbl_51944	none	STRG.10098.2,blat.proc3825152.chain_2334	2	STRG.10098.1,Trinity_GG_5617_c0_g1_i2,Trinity_GG_5617_c0_g1_i4,Trinity_GG_5617_c0_g1_i6,blat.proc3825152.chain_2333,blat.proc3825152.chain_2335,blat.proc3825152.chain_2337	7
scaffold_3	alt_acceptor	11980934	11980935	+	asmbl_40385	none	STRG.3620.3	1	STRG.3620.1,STRG.3620.2,Trinity_GG_19308_c0_g1_i1,Trinity_GG_19308_c0_g1_i2,Trinity_GG_19308_c0_g2_i1,blat.proc3825166.chain_49,blat.proc3825166.chain_50,blat.proc3825166.chain_51	8
scaffold_8	alternate_exon	17683985	17685668	-	asmbl_52482	none	STRG.10687.1,Trinity_GG_5890_c0_g1_i6,blat.proc3825152.chain_2839	3	STRG.10687.2,Trinity_GG_5890_c0_g1_i4,blat.proc3825152.chain_2840	3
scaffold_94	ends_in_intron	11346	11346	+	asmbl_55841,asmbl_55843	none	Trinity_GG_34004_c0_g1_i1,blat.proc3825178.chain_3259,blat.proc3825178.chain_3261	3	STRG.30138.1,STRG.30138.2,Trinity_GG_33958_c0_g1_i1,Trinity_GG_34004_c0_g1_i2,blat.proc3825178.chain_3200	5
scaffold_5	spliced_intron	4865673	4866834	+	asmbl_45310	none	STRG.5946.2,blat.proc3825166.chain_2172	2	STRG.5946.3,Trinity_GG_20566_c0_g1_i1,Trinity_GG_20566_c0_g1_i4,blat.proc3825166.chain_2171,blat.proc3825166.chain_2173	5
scaffold_9	ends_in_intron	16655110	16655110	-	asmbl_55601	none	blat.proc3825154.chain_285	1	STRG.11813.1,blat.proc3825154.chain_279,blat.proc3825154.chain_280,blat.proc3825154.chain_281,blat.proc3825154.chain_282	5
scaffold_16	starts_in_intron	5495673	5495673	-	asmbl_17113	none	Trinity_GG_10850_c0_g1_i1,blat.proc3825158.chain_454	2	STRG.19307.1,Trinity_GG_10850_c0_g1_i2,blat.proc3825158.chain_455	3
scaffold_28	retained_intron	9415572	9415730	-	asmbl_38510	none	blat.proc3825162.chain_3156	1	STRG.29972.1,blat.proc3825162.chain_3155	2
scaffold_8	spliced_intron	18162712	18162884	-	asmbl_52513,asmbl_52514,asmbl_52517	none	STRG.10730.1,Trinity_GG_5967_c0_g1_i3,Trinity_GG_5967_c0_g1_i5,blat.proc3825152.chain_2998,blat.proc3825152.chain_3000,blat.proc3825152.chain_3001	6	Trinity_GG_5967_c0_g1_i4,blat.proc3825152.chain_2997,blat.proc3825152.chain_2999	3
scaffold_500	spliced_intron	1484	1625	+	asmbl_46494	none	blat.proc3825178.chain_3434	1	blat.proc3825178.chain_3437	1
scaffold_1	retained_intron	5748921	5749003	+	asmbl_1788	none	blat.proc3825164.chain_514	1	STRG.378.1,STRG.378.2,STRG.378.3,blat.proc3825164.chain_513,blat.proc3825164.chain_516	5
scaffold_12	spliced_intron	10187905	10188527	-	asmbl_8733,asmbl_8734	none	STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3520	3	blat.proc3825154.chain_3518,blat.proc3825154.chain_3519	2
scaffold_1150	retained_exon	2277	2370	+	asmbl_7414	none	STRG.30556.2	1	STRG.30556.1,blat.proc3825178.chain_3564	2
scaffold_13	alt_donor	16460319	16460320	-	asmbl_10300	none	STRG.16703.3,Trinity_GG_9330_c0_g1_i5,blat.proc3825156.chain_1488	3	STRG.16703.1,STRG.16703.4,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1485,blat.proc3825156.chain_1489	5
scaffold_3	retained_exon	7408924	7408953	-	asmbl_38967	none	STRG.3339.1,blat.proc3825148.chain_3221	2	STRG.3339.2,blat.proc3825148.chain_3220	2
scaffold_5	retained_intron	14569065	14569227	-	asmbl_44600	none	blat.proc3825150.chain_2783,blat.proc3825150.chain_2784	2	STRG.6658.2	1
scaffold_16	alt_acceptor	14084316	14084317	-	asmbl_17428	none	blat.proc3825158.chain_843	1	STRG.19807.1	1
scaffold_5	retained_exon	1228071	1228148	-	asmbl_43840	none	STRG.5676.1,blat.proc3825150.chain_1906	2	STRG.5676.2	1
scaffold_1	spliced_intron	3270179	3270864	-	asmbl_140,asmbl_142	none	STRG.204.1,blat.proc3825148.chain_203,blat.proc3825148.chain_204	3	blat.proc3825148.chain_202	1
scaffold_9	spliced_intron	16664696	16664923	-	asmbl_55609	none	STRG.11805.2,blat.proc3825154.chain_185	2	blat.proc3825154.chain_187	1
scaffold_20	retained_intron	10384754	10385038	+	asmbl_26958	none	blat.proc3825176.chain_672	1	STRG.23583.1,STRG.23583.2,STRG.23583.3,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_670,blat.proc3825176.chain_671	7
scaffold_8	alternate_exon	1127414	1134554	+	asmbl_52681	none	STRG.9752.3	1	STRG.9752.2	1
scaffold_10	ends_in_intron	12967435	12967435	+	asmbl_3567	none	STRG.12892.1,blat.proc3825170.chain_1487	2	STRG.12892.2,STRG.12892.3,blat.proc3825170.chain_1486	3
scaffold_21	spliced_intron	11964407	11964472	-	asmbl_28142	none	STRG.24652.1	1	Trinity_GG_13785_c0_g1_i1,blat.proc3825160.chain_1851	2
scaffold_22	retained_intron	6128912	6129087	+	asmbl_30099,asmbl_30101	none	STRG.24968.6,blat.proc3825176.chain_2119	2	STRG.24968.1,STRG.24968.4,STRG.24968.7,blat.proc3825176.chain_2118,blat.proc3825176.chain_2120,blat.proc3825176.chain_2121	6
scaffold_21	alternate_exon	691873	694384	+	asmbl_28284	none	STRG.23756.2	1	STRG.23756.4	1
scaffold_7	retained_intron	5916256	5916585	-	asmbl_50904	none	blat.proc3825152.chain_1288	1	STRG.8897.2,STRG.8897.3,blat.proc3825152.chain_1284,blat.proc3825152.chain_1285,blat.proc3825152.chain_1286	5
scaffold_17	alt_acceptor	13196891	13196892	-	asmbl_18360,asmbl_18361	none	STRG.20817.1,STRG.20817.2,blat.proc3825158.chain_1827,blat.proc3825158.chain_1830,blat.proc3825174.chain_1690	5	STRG.20817.3,blat.proc3825158.chain_1829	2
scaffold_23	alt_donor	8950224	8950225	-	asmbl_31089	none	STRG.26155.2,blat.proc3825160.chain_3226	2	STRG.26155.1,blat.proc3825160.chain_3227	2
scaffold_7	retained_intron	12614534	12614733	+	asmbl_50279	none	STRG.9372.2,Trinity_GG_22488_c0_g1_i1,blat.proc3825168.chain_1850	3	STRG.9372.1,Trinity_GG_22488_c0_g1_i2,blat.proc3825168.chain_1849	3
scaffold_8	alt_donor	11637433	11637434	-	asmbl_52151	none	STRG.10374.1,blat.proc3825152.chain_2598	2	STRG.10374.3	1
scaffold_3	retained_intron	13327018	13327170	-	asmbl_39248,asmbl_39249	none	STRG.3680.2,Trinity_GG_2014_c0_g1_i1,blat.proc3825148.chain_3554	3	STRG.3680.1,Trinity_GG_2014_c0_g1_i2,blat.proc3825148.chain_3553	3
scaffold_8	starts_in_intron	1253769	1253769	+	asmbl_52686	none	blat.proc3825168.chain_2209	1	STRG.9751.1	1
scaffold_18	retained_intron	5990415	5990661	+	asmbl_20647	none	blat.proc3825174.chain_2285	1	blat.proc3825174.chain_2286,blat.proc3825174.chain_2288,blat.proc3825174.chain_2289,blat.proc3825174.chain_2290,blat.proc3825174.chain_2291,blat.proc3825174.chain_2292,blat.proc3825174.chain_2293	7
scaffold_20	ends_in_intron	2765032	2765032	-	asmbl_25669	none	Trinity_GG_12845_c0_g1_i2,blat.proc3825160.chain_97	2	STRG.23018.2,STRG.23018.3,STRG.23018.4,STRG.23018.5	4
scaffold_3	spliced_intron	17780927	17781032	+	asmbl_40694	none	STRG.3995.2	1	STRG.3995.1,Trinity_GG_19551_c0_g1_i1,blat.proc3825166.chain_487	3
scaffold_3	spliced_intron	3268072	3268486	-	asmbl_38760,asmbl_38761,asmbl_38765	none	STRG.3073.1,STRG.3073.2,STRG.3073.3,blat.proc3825148.chain_2953,blat.proc3825148.chain_2954	5	blat.proc3825148.chain_2950	1
scaffold_15	spliced_intron	9730272	9730382	-	asmbl_14404,asmbl_14405,asmbl_14408,asmbl_14409	none	STRG.18492.1,STRG.18492.2,STRG.18492.3,STRG.18492.4,Trinity_GG_10360_c0_g1_i2,blat.proc3825156.chain_3289,blat.proc3825156.chain_3291	7	blat.proc3825156.chain_3290	1
scaffold_25	ends_in_intron	666155	666155	+	asmbl_33347	none	blat.proc3825178.chain_236	1	STRG.27122.1,STRG.27122.2	2
scaffold_6	alternate_exon	12207708	12207811	+	asmbl_47384	none	STRG.7991.2,Trinity_GG_21695_c0_g1_i1,blat.proc3825168.chain_456	3	STRG.7991.1,Trinity_GG_21695_c0_g1_i3,Trinity_GG_21695_c0_g1_i4,blat.proc3825168.chain_455,blat.proc3825168.chain_457	5
scaffold_14	alt_donor	7027503	7027504	+	asmbl_12126	none	blat.proc3825172.chain_1932	1	STRG.17153.1,blat.proc3825172.chain_1933	2
scaffold_5	alt_acceptor	12636886	12636887	+	asmbl_45804	none	STRG.6502.1,blat.proc3825166.chain_2691	2	STRG.6502.2	1
scaffold_26	ends_in_intron	5982523	5982523	+	asmbl_35063	none	blat.proc3825178.chain_1432	1	STRG.28312.1,Trinity_GG_32976_c0_g1_i4,blat.proc3825178.chain_1429,blat.proc3825178.chain_1430,blat.proc3825178.chain_1431,blat.proc3825178.chain_1433	6
scaffold_6	spliced_intron	4826646	4826724	-	asmbl_48357	none	STRG.7457.1,blat.proc3825150.chain_3609	2	blat.proc3825150.chain_3610	1
scaffold_1	starts_in_intron	5139803	5139803	+	asmbl_1701	none	blat.proc3825164.chain_411	1	STRG.321.1,STRG.321.2,blat.proc3825164.chain_410	3
scaffold_14	ends_in_intron	8645218	8645218	+	asmbl_12257	none	blat.proc3825172.chain_2055	1	STRG.17299.2	1
scaffold_2	starts_in_intron	3770139	3770139	+	asmbl_24312	none	blat.proc3825164.chain_1955	1	STRG.1809.1,blat.proc3825164.chain_1956	2
scaffold_1	starts_in_intron	14428713	14428713	+	asmbl_2394,asmbl_2395,asmbl_2396	none	STRG.1046.1,STRG.1046.2,blat.proc3825164.chain_1219	3	blat.proc3825164.chain_1220	1
scaffold_20	skipped_exon	10313546	10315402	+	asmbl_26946	none	blat.proc3825176.chain_690,blat.proc3825176.chain_691	2	STRG.23577.1,Trinity_GG_30312_c1_g1_i1,blat.proc3825176.chain_692	3
scaffold_22	retained_exon	10682010	10682061	-	asmbl_29615	none	STRG.25415.2,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608	3	blat.proc3825160.chain_2610	1
scaffold_10	alt_acceptor	762525	762526	-	asmbl_4004,asmbl_4006	none	STRG.11960.1,Trinity_GG_6663_c0_g1_i1,Trinity_GG_6663_c0_g1_i2,blat.proc3825154.chain_530,blat.proc3825154.chain_531	5	STRG.11960.2	1
scaffold_926	starts_in_intron	2052	2052	-	asmbl_55832	none	blat.proc3825162.chain_3609	1	STRG.30510.1	1
scaffold_7	alt_acceptor	7611468	7611469	-	asmbl_50950,asmbl_50952,asmbl_50953	none	STRG.9014.1,STRG.9014.2,STRG.9014.4,blat.proc3825152.chain_1361,blat.proc3825152.chain_1363	5	STRG.9014.3	1
scaffold_3	retained_intron	13833535	13833619	+	asmbl_40461,asmbl_40462	none	STRG.3730.1,Trinity_GG_19394_c0_g1_i1,Trinity_GG_19394_c0_g1_i3,blat.proc3825166.chain_207,blat.proc3825166.chain_208,blat.proc3825166.chain_210	6	Trinity_GG_19394_c0_g1_i4,blat.proc3825166.chain_206	2
scaffold_24	retained_intron	1064378	1064849	+	asmbl_32063	none	STRG.26380.1,Trinity_GG_31903_c0_g1_i1,Trinity_GG_31903_c0_g1_i2,blat.proc3825176.chain_3366,blat.proc3825176.chain_3368	5	STRG.26380.3,Trinity_GG_31903_c0_g1_i3,blat.proc3825176.chain_3367	3
scaffold_20	skipped_exon	10113827	10114091	-	asmbl_26084	none	STRG.23563.3	1	STRG.23563.1,STRG.23563.2,blat.proc3825160.chain_645,blat.proc3825160.chain_647,blat.proc3825160.chain_648	5
scaffold_22	retained_intron	9402434	9402476	+	asmbl_30307	none	STRG.25284.1	1	STRG.25284.3	1
scaffold_5	alternate_exon	7320077	7320646	+	asmbl_45493	none	Trinity_GG_20663_c0_g2_i1	1	Trinity_GG_20663_c0_g1_i1,Trinity_GG_20663_c0_g1_i2,blat.proc3825166.chain_2348,blat.proc3825166.chain_2349	4
scaffold_13	ends_in_intron	9325366	9325366	-	asmbl_10019	none	Trinity_GG_9054_c0_g1_i5,blat.proc3825156.chain_1014	2	STRG.16199.4	1
scaffold_14	retained_intron	583074	583722	+	asmbl_11767,asmbl_11773	none	STRG.16740.1,STRG.16740.4,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	4	Trinity_GG_26527_c0_g1_i1,blat.proc3825172.chain_1519	2
scaffold_22	retained_exon	6130242	6130438	+	asmbl_30096,asmbl_30099	none	STRG.24968.4,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120	3	STRG.24968.7,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2124	3
scaffold_28	alternate_exon	5259438	5259609	-	asmbl_38280,asmbl_38281	none	STRG.29682.1,blat.proc3825162.chain_2871,blat.proc3825162.chain_2872	3	STRG.29682.2	1
scaffold_1	retained_exon	6015714	6015786	+	asmbl_1818,asmbl_1819	none	STRG.408.1,blat.proc3825164.chain_565,blat.proc3825164.chain_566	3	blat.proc3825164.chain_567	1
scaffold_2	retained_exon	6639916	6640008	-	asmbl_23212,asmbl_23214,asmbl_23216,asmbl_23218	none	STRG.2030.1,STRG.2030.2,blat.proc3825148.chain_2032,blat.proc3825148.chain_2033,blat.proc3825148.chain_2037	5	STRG.2030.3,blat.proc3825148.chain_2034	2
scaffold_16	alternate_exon	14546402	14550755	-	asmbl_17462	none	STRG.19850.1	1	STRG.19850.3	1
scaffold_6	starts_in_intron	4181893	4181893	-	asmbl_48296	none	blat.proc3825150.chain_3534	1	STRG.7398.1,blat.proc3825150.chain_3535	2
scaffold_25	alt_acceptor	3238570	3238571	-	asmbl_34116	none	STRG.27265.2	1	STRG.27265.1	1
scaffold_19	spliced_intron	12207921	12208221	+	asmbl_21763,asmbl_21764	none	STRG.22551.3,Trinity_GG_29759_c0_g1_i5,blat.proc3825174.chain_3520	3	STRG.22551.2,Trinity_GG_29759_c0_g1_i2,Trinity_GG_29759_c0_g1_i3,blat.proc3825174.chain_3519,blat.proc3825174.chain_3522	5
scaffold_44	alt_donor	21041	21042	-	asmbl_43709	none	STRG.30049.1,blat.proc3825162.chain_3220	2	STRG.30049.2	1
scaffold_5	starts_in_intron	6021539	6021539	-	asmbl_44085	none	Trinity_GG_3391_c0_g1_i1	1	STRG.6023.1,blat.proc3825150.chain_2239	2
scaffold_20	alt_acceptor	8936064	8936065	-	asmbl_26013	none	STRG.23433.3	1	STRG.23433.1,STRG.23433.2	2
scaffold_1	alt_donor	14428503	14428504	-	asmbl_922	none	STRG.1045.3,blat.proc3825148.chain_1049	2	STRG.1045.2,blat.proc3825148.chain_1046	2
scaffold_1	retained_exon	3679503	3680315	+	asmbl_1627	none	blat.proc3825164.chain_366,blat.proc3825164.chain_368	2	STRG.242.3	1
scaffold_26	alternate_exon	1979962	1980020	+	asmbl_34726	none	STRG.27941.2	1	STRG.27941.1	1
scaffold_5	spliced_intron	2668980	2669850	-	asmbl_43892,asmbl_43894,asmbl_43895	none	STRG.5796.1,STRG.5796.3,blat.proc3825150.chain_1947,blat.proc3825150.chain_1949	4	STRG.5796.2,STRG.5796.5,Trinity_GG_3227_c0_g1_i5,blat.proc3825150.chain_1943,blat.proc3825150.chain_1945	5
scaffold_17	spliced_intron	4267993	4268192	+	asmbl_18776	none	STRG.20175.1,blat.proc3825174.chain_1078	2	Trinity_GG_28385_c0_g2_i1,blat.proc3825174.chain_1079	2
scaffold_28	alt_acceptor	8414891	8414892	+	asmbl_37745,asmbl_37746	none	STRG.29918.1,Trinity_GG_33871_c0_g1_i1,Trinity_GG_33871_c0_g1_i2,blat.proc3825178.chain_3062,blat.proc3825178.chain_3063	5	STRG.29918.2	1
scaffold_17	alternate_exon	5691488	5691679	+	asmbl_18827	none	STRG.20272.3	1	STRG.20272.1,Trinity_GG_28413_c0_g1_i1,blat.proc3825174.chain_1116	3
scaffold_4	starts_in_intron	8744635	8744635	+	asmbl_41575	none	blat.proc3825166.chain_1122	1	STRG.4690.1	1
scaffold_21	starts_in_intron	6631989	6631989	+	asmbl_28681	none	blat.proc3825176.chain_1408	1	STRG.24187.1,blat.proc3825176.chain_1409	2
scaffold_13	starts_in_intron	3777390	3777390	-	asmbl_9575	none	blat.proc3825156.chain_535	1	blat.proc3825156.chain_579,blat.proc3825156.chain_584	2
scaffold_12	alt_donor	12455279	12455280	-	asmbl_8886	none	blat.proc3825154.chain_3675	1	STRG.15152.1,blat.proc3825154.chain_3674	2
scaffold_4	retained_intron	4051130	4051203	+	asmbl_41211	none	Trinity_GG_19705_c0_g1_i2,blat.proc3825166.chain_757	2	STRG.4313.1,Trinity_GG_19705_c0_g1_i1,blat.proc3825166.chain_756	3
scaffold_5	ends_in_intron	6578280	6578280	-	asmbl_44100	none	blat.proc3825150.chain_2176	1	STRG.6057.1,STRG.6057.2,blat.proc3825150.chain_2178,blat.proc3825150.chain_2180	4
scaffold_14	alt_donor	12707673	12707674	-	asmbl_13589	none	STRG.17584.2	1	STRG.17584.1	1
scaffold_11	retained_exon	2845822	2845940	-	asmbl_6517	none	STRG.13429.1,Trinity_GG_7534_c0_g1_i1,blat.proc3825154.chain_2022	3	STRG.13429.2,Trinity_GG_7534_c0_g1_i2,blat.proc3825154.chain_2023	3
scaffold_9	spliced_intron	634983	635016	+	asmbl_53777	none	STRG.10791.1	1	Trinity_GG_23270_c0_g1_i1,Trinity_GG_23270_c0_g1_i2,blat.proc3825168.chain_3276,blat.proc3825168.chain_3277,blat.proc3825168.chain_3279	5
scaffold_22	alt_donor	316381	316382	+	asmbl_29839,asmbl_29840,asmbl_29845	none	STRG.24686.2,STRG.24686.3,blat.proc3825176.chain_1819	3	STRG.24686.1,blat.proc3825176.chain_1815,blat.proc3825176.chain_1816,blat.proc3825176.chain_1817,blat.proc3825176.chain_1818	5
scaffold_5	ends_in_intron	16508327	16508327	+	asmbl_46106	none	blat.proc3825166.chain_3017	1	STRG.6840.1,blat.proc3825166.chain_3016,blat.proc3825166.chain_3018	3
scaffold_7	alt_acceptor	3951463	3951464	-	asmbl_50828	none	STRG.8793.1,blat.proc3825152.chain_1268	2	STRG.8793.2,blat.proc3825152.chain_1267	2
scaffold_1	alt_acceptor	9515894	9515895	-	asmbl_538	none	STRG.637.4,Trinity_GG_338_c0_g1_i2,blat.proc3825148.chain_629	3	STRG.637.3	1
scaffold_13	spliced_intron	8013982	8014196	+	asmbl_11088,asmbl_11092,asmbl_11093	none	STRG.16081.1,STRG.16081.2,blat.proc3825172.chain_787,blat.proc3825172.chain_788	4	Trinity_GG_26119_c0_g1_i3,blat.proc3825172.chain_789	2
scaffold_10	retained_exon	5178322	5178379	+	asmbl_3148,asmbl_3154	none	STRG.12343.1,blat.proc3825170.chain_988,blat.proc3825170.chain_990	3	STRG.12343.3,blat.proc3825170.chain_991	2
scaffold_15	starts_in_intron	1715728	1715728	-	asmbl_13972	none	blat.proc3825156.chain_2780	1	STRG.17980.1,blat.proc3825156.chain_2779	2
scaffold_25	retained_intron	6068856	6068946	-	asmbl_34319	none	blat.proc3825162.chain_845	1	STRG.27490.1,STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_846,blat.proc3825162.chain_847,blat.proc3825162.chain_848,blat.proc3825162.chain_849,blat.proc3825162.chain_850	8
scaffold_28	alt_acceptor	7831989	7831990	-	asmbl_38420	none	STRG.29854.2,blat.proc3825162.chain_3043	2	STRG.29854.1,blat.proc3825162.chain_3044	2
scaffold_8	starts_in_intron	4871718	4871718	+	asmbl_52867	none	STRG.9952.4	1	STRG.9952.1,STRG.9952.2,STRG.9952.3,blat.proc3825168.chain_2514,blat.proc3825168.chain_2516,blat.proc3825168.chain_2517,blat.proc3825168.chain_2518,blat.proc3825168.chain_2519	8
scaffold_19	skipped_exon	3683129	3683854	+	asmbl_21333,asmbl_21334	none	STRG.22058.1,STRG.22058.3	2	STRG.22058.2	1
scaffold_10	skipped_exon	5750331	5751625	-	asmbl_4382	none	STRG.12408.2	1	STRG.12408.1,blat.proc3825154.chain_946	2
scaffold_18	alt_donor	3093263	3093264	+	asmbl_20438	none	Trinity_GG_28931_c0_g1_i1,blat.proc3825174.chain_2044	2	STRG.21145.1,Trinity_GG_28931_c0_g1_i2,blat.proc3825174.chain_2043	3
scaffold_28	alt_donor	9225985	9225986	-	asmbl_38500	none	STRG.29966.3	1	STRG.29966.2	1
scaffold_9	ends_in_intron	16558033	16558033	-	asmbl_55580	none	STRG.11806.6,Trinity_GG_6524_c0_g2_i2,blat.proc3825154.chain_275	3	STRG.11806.1,STRG.11806.2,STRG.11806.3,STRG.11806.4,STRG.11806.5,Trinity_GG_6524_c0_g2_i1,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274,blat.proc3825154.chain_276	12
scaffold_3	spliced_intron	7708801	7708889	-	asmbl_38976,asmbl_38977,asmbl_38978,asmbl_38979,asmbl_38981,asmbl_38982,asmbl_38983	none	STRG.3368.1,blat.proc3825148.chain_3197,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3201,blat.proc3825148.chain_3202,blat.proc3825148.chain_3203	7	blat.proc3825148.chain_3200,blat.proc3825148.chain_3204	2
scaffold_3	ends_in_intron	17950360	17950360	-	asmbl_39579	none	STRG.4014.1,Trinity_GG_2190_c0_g1_i1,blat.proc3825150.chain_150	3	blat.proc3825150.chain_149	1
scaffold_11	alt_acceptor	13252911	13252912	-	asmbl_7122,asmbl_7123	none	STRG.14198.2,STRG.14198.3,blat.proc3825154.chain_2767,blat.proc3825154.chain_2771	4	STRG.14198.4,blat.proc3825154.chain_2769,blat.proc3825154.chain_2770	3
scaffold_24	spliced_intron	10422912	10423124	+	asmbl_32558	none	STRG.27007.1,blat.proc3825178.chain_215	2	Trinity_GG_32235_c0_g1_i2,blat.proc3825178.chain_216,blat.proc3825178.chain_217	3
scaffold_7	spliced_intron	7534643	7534673	-	asmbl_50949	none	STRG.9007.1	1	Trinity_GG_5092_c0_g1_i1	1
scaffold_17	retained_intron	5137391	5138143	-	asmbl_17923,asmbl_17924	none	STRG.20247.4,blat.proc3825158.chain_1308	2	STRG.20247.3,blat.proc3825158.chain_1309	2
scaffold_1	alt_donor	5698156	5698157	+	asmbl_1751	none	STRG.365.2	1	STRG.365.1,Trinity_GG_17556_c0_g1_i1,blat.proc3825164.chain_491	3
scaffold_28	starts_in_intron	7721056	7721056	+	asmbl_37708	none	Trinity_GG_33846_c1_g1_i2	1	STRG.29845.1,blat.proc3825178.chain_3018,blat.proc3825178.chain_3019,blat.proc3825178.chain_3022	4
scaffold_5	starts_in_intron	13801164	13801164	-	asmbl_44560	none	blat.proc3825150.chain_2812	1	STRG.6602.1,STRG.6602.3,blat.proc3825150.chain_2811,blat.proc3825150.chain_2813,blat.proc3825150.chain_2814,blat.proc3825150.chain_2815	6
scaffold_22	skipped_exon	2387481	2389733	+	asmbl_29942	none	blat.proc3825176.chain_1828	1	STRG.24781.1,blat.proc3825176.chain_1826,blat.proc3825176.chain_1827	3
scaffold_15	skipped_exon	11141169	11142116	-	asmbl_14485,asmbl_14487,asmbl_14488	none	blat.proc3825156.chain_3383,blat.proc3825156.chain_3385,blat.proc3825156.chain_3386	3	blat.proc3825156.chain_3380,blat.proc3825156.chain_3382,blat.proc3825156.chain_3384	3
scaffold_24	spliced_intron	10597325	10597404	-	asmbl_33211	none	STRG.27020.1,blat.proc3825162.chain_363	2	blat.proc3825162.chain_362	1
scaffold_8	alternate_exon	17495619	17501659	+	asmbl_53487,asmbl_53488,asmbl_53490	none	blat.proc3825168.chain_3151,blat.proc3825168.chain_3152,blat.proc3825168.chain_3155	3	STRG.10682.4	1
scaffold_18	alt_acceptor	7172231	7172232	-	asmbl_19926	none	STRG.21417.2,Trinity_GG_11987_c0_g1_i5,blat.proc3825158.chain_2335	3	STRG.21417.1,STRG.21417.3,Trinity_GG_11987_c0_g1_i3,blat.proc3825158.chain_2333	4
scaffold_15	alternate_exon	6883099	6883726	-	asmbl_14262	none	Trinity_GG_10293_c0_g1_i6,blat.proc3825156.chain_3157	2	STRG.18301.1,STRG.18301.3,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153	7
scaffold_25	alt_acceptor	4453822	4453823	-	asmbl_34189	none	STRG.27376.3	1	STRG.27376.2	1
scaffold_1	spliced_intron	16095601	16095749	-	asmbl_974,asmbl_975	none	STRG.1129.2,blat.proc3825148.chain_1118,blat.proc3825148.chain_1120	3	STRG.1129.1,Trinity_GG_582_c0_g1_i1,blat.proc3825148.chain_1117,blat.proc3825148.chain_1119	4
scaffold_21	retained_exon	8538971	8539090	-	asmbl_27929,asmbl_27930,asmbl_27931	none	STRG.24387.1,STRG.24387.2,STRG.24387.3,blat.proc3825160.chain_1546,blat.proc3825160.chain_1547,blat.proc3825160.chain_1548,blat.proc3825160.chain_1675	7	blat.proc3825160.chain_1549	1
scaffold_12	retained_intron	10187619	10187770	-	asmbl_8737	none	blat.proc3825154.chain_3519	1	STRG.14994.3,blat.proc3825154.chain_3520	2
scaffold_4	alternate_exon	4414581	4414846	+	asmbl_41248	none	Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_845	2	STRG.4349.1,STRG.4349.3,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_843,blat.proc3825166.chain_851,blat.proc3825166.chain_853	7
scaffold_2	ends_in_intron	5723450	5723450	+	asmbl_24438	none	blat.proc3825164.chain_2089	1	STRG.1972.1	1
scaffold_12	spliced_intron	6544970	6545003	+	asmbl_7699	none	STRG.14758.3	1	STRG.14758.1,Trinity_GG_25435_c0_g1_i1,Trinity_GG_25435_c0_g1_i2,blat.proc3825170.chain_3247,blat.proc3825170.chain_3248	5
scaffold_11	retained_exon	3516397	3516552	+	asmbl_5446,asmbl_5447	none	STRG.13485.3,blat.proc3825170.chain_1978	2	STRG.13485.1	1
scaffold_6	retained_intron	573750	573950	+	asmbl_46665	none	STRG.7115.1,Trinity_GG_21206_c0_g1_i1,blat.proc3825166.chain_3279	3	STRG.7115.2,blat.proc3825166.chain_3277	2
scaffold_16	spliced_intron	7910028	7910131	+	asmbl_16360	none	STRG.19445.1,Trinity_GG_27913_c0_g1_i1,blat.proc3825174.chain_282	3	Trinity_GG_27913_c0_g1_i2,blat.proc3825174.chain_281,blat.proc3825174.chain_283	3
scaffold_5	retained_intron	9853379	9853480	-	asmbl_44305	none	STRG.6308.2,Trinity_GG_3547_c0_g1_i1,blat.proc3825150.chain_2492	3	STRG.6308.1	1
scaffold_5	spliced_intron	9704095	9704464	-	asmbl_44294,asmbl_44299	none	STRG.6293.4,blat.proc3825150.chain_2497,blat.proc3825150.chain_2505	3	STRG.6293.3,Trinity_GG_3551_c0_g1_i17,blat.proc3825150.chain_2501	3
scaffold_16	alt_donor	7218214	7218215	-	asmbl_17173,asmbl_17176	none	STRG.19399.1,STRG.19399.2	2	STRG.19399.3	1
scaffold_5	retained_intron	10384008	10384137	-	asmbl_44351	none	STRG.6339.1	1	STRG.6339.2	1
scaffold_7	retained_intron	13015452	13015641	-	asmbl_51283	none	Trinity_GG_5313_c0_g2_i1,blat.proc3825152.chain_1811	2	STRG.9415.1	1
scaffold_13	alt_acceptor	16437296	16437297	+	asmbl_11579	none	Trinity_GG_26477_c0_g1_i1,blat.proc3825172.chain_1424	2	STRG.16696.1,STRG.16696.2,Trinity_GG_26477_c0_g1_i5,blat.proc3825172.chain_1426	4
scaffold_6	alt_donor	12899732	12899733	+	asmbl_47444	none	STRG.8048.3	1	STRG.8048.1,STRG.8048.2,blat.proc3825168.chain_459	3
scaffold_26	alternate_exon	1322197	1329585	-	asmbl_35401	none	STRG.27913.3	1	blat.proc3825162.chain_1239	1
scaffold_5	retained_intron	966879	967824	-	asmbl_43798	none	STRG.5644.2,Trinity_GG_3137_c0_g1_i1,Trinity_GG_3137_c0_g1_i3,Trinity_GG_3137_c1_g1_i1,blat.proc3825150.chain_1791,blat.proc3825150.chain_1795	6	STRG.5644.1	1
scaffold_7	alt_donor	11412972	11412973	+	asmbl_50173	none	STRG.9288.1,Trinity_GG_22465_c0_g1_i2,blat.proc3825168.chain_1792	3	STRG.9288.3,Trinity_GG_22465_c0_g1_i4,blat.proc3825168.chain_1794,blat.proc3825168.chain_1795	4
scaffold_11	alternate_exon	13382288	13382316	+	asmbl_6053	none	STRG.14203.1	1	STRG.14203.2,STRG.14203.3,blat.proc3825170.chain_2760,blat.proc3825170.chain_2761	4
scaffold_18	starts_in_intron	1741220	1741220	+	asmbl_20380	none	blat.proc3825174.chain_1993	1	STRG.21060.1,blat.proc3825174.chain_1994	2
scaffold_18	retained_intron	11297253	11297345	-	asmbl_20128,asmbl_20129	none	STRG.21674.2,Trinity_GG_12116_c0_g1_i4,blat.proc3825158.chain_2566,blat.proc3825158.chain_2567	4	STRG.21674.1,blat.proc3825158.chain_2568	2
scaffold_18	starts_in_intron	12482249	12482249	+	asmbl_20968	none	blat.proc3825174.chain_2732	1	STRG.21715.1,blat.proc3825174.chain_2731	2
scaffold_14	skipped_exon	11139409	11139772	-	asmbl_13447	none	STRG.17450.3,blat.proc3825156.chain_2248	2	STRG.17450.2,blat.proc3825156.chain_2251	2
scaffold_10	retained_exon	11970269	11971419	+	asmbl_3509	none	STRG.12838.2	1	STRG.12838.5	1
scaffold_8	ends_in_intron	7511021	7511021	-	asmbl_51917	none	blat.proc3825152.chain_2262	1	STRG.10077.1,blat.proc3825152.chain_2261	2
scaffold_27	skipped_exon	2829483	2830934	+	asmbl_36129	none	STRG.28768.3,blat.proc3825178.chain_1936	2	STRG.28768.2,blat.proc3825178.chain_1932	2
scaffold_18	retained_exon	9169889	9170255	+	asmbl_20879	none	STRG.21559.1,Trinity_GG_29198_c0_g1_i3,blat.proc3825174.chain_2559	3	STRG.21559.2,STRG.21559.3,Trinity_GG_29198_c0_g1_i2,blat.proc3825174.chain_2557	4
scaffold_6	ends_in_intron	14038712	14038712	-	asmbl_48983	none	Trinity_GG_4645_c0_g1_i1,blat.proc3825152.chain_590	2	STRG.8161.1	1
scaffold_12	starts_in_intron	6514119	6514119	+	asmbl_7691	none	Trinity_GG_25451_c1_g1_i1,blat.proc3825170.chain_3278	2	STRG.14745.1,blat.proc3825170.chain_3277	2
scaffold_20	starts_in_intron	3253808	3253808	+	asmbl_26525	none	Trinity_GG_30017_c0_g1_i2,blat.proc3825176.chain_216	2	STRG.23048.1,Trinity_GG_30017_c0_g1_i1,blat.proc3825176.chain_217	3
scaffold_2	alt_acceptor	9889779	9889780	-	asmbl_23400,asmbl_23402	none	STRG.2192.1,blat.proc3825148.chain_2166,blat.proc3825148.chain_2167	3	blat.proc3825148.chain_2165	1
scaffold_3	spliced_intron	16072508	16072620	+	asmbl_40604,asmbl_40605	none	STRG.3889.1,STRG.3889.2,blat.proc3825166.chain_374,blat.proc3825166.chain_376	4	blat.proc3825166.chain_375	1
scaffold_21	alt_donor	5775963	5775964	-	asmbl_27692	none	STRG.24114.2,blat.proc3825160.chain_1203	2	STRG.24114.1,STRG.24114.3,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200	5
scaffold_20	spliced_intron	10384347	10384667	+	asmbl_26955	none	Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_671	2	blat.proc3825176.chain_672	1
scaffold_11	alt_donor	3736430	3736431	-	asmbl_6569,asmbl_6571	none	STRG.13497.1,blat.proc3825154.chain_2060,blat.proc3825154.chain_2062	3	STRG.13497.2,blat.proc3825154.chain_2061	2
scaffold_24	spliced_intron	3655857	3656074	+	asmbl_32154	none	STRG.26550.6	1	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3
scaffold_16	alt_acceptor	10448353	10448354	+	asmbl_16538	none	STRG.19614.4	1	STRG.19614.2,blat.proc3825174.chain_484	2
scaffold_12	alternate_exon	16316171	16316314	-	asmbl_9117,asmbl_9119	none	STRG.15386.2,blat.proc3825156.chain_239	2	blat.proc3825156.chain_240	1
scaffold_20	alternate_exon	7825500	7825964	-	asmbl_25930	none	blat.proc3825160.chain_413	1	STRG.23333.1,blat.proc3825160.chain_410	2
scaffold_2	spliced_intron	16362712	16362791	+	asmbl_25125	none	STRG.2576.1,Trinity_GG_18765_c0_g1_i1,blat.proc3825164.chain_2854	3	Trinity_GG_18765_c0_g1_i2,blat.proc3825164.chain_2855	2
scaffold_17	alternate_exon	8252883	8253752	+	asmbl_18960	none	STRG.20444.1,blat.proc3825174.chain_1219	2	blat.proc3825174.chain_1220	1
scaffold_3	alternate_exon	9516758	9517587	+	asmbl_40230	none	blat.proc3825164.chain_3673	1	STRG.3436.1,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3676,blat.proc3825164.chain_3678	5
scaffold_14	spliced_intron	12627333	12627465	-	asmbl_13579,asmbl_13580,asmbl_13581,asmbl_13582,asmbl_13583,asmbl_13584,asmbl_13586,asmbl_13587	none	STRG.17582.1,STRG.17582.2,STRG.17582.3,STRG.17582.4,blat.proc3825156.chain_2416,blat.proc3825156.chain_2417,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2420,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	12	blat.proc3825156.chain_2423	1
scaffold_18	retained_intron	2050891	2050959	-	asmbl_19691	none	Trinity_GG_11827_c1_g1_i2,blat.proc3825158.chain_2075	2	STRG.21094.3	1
scaffold_13	retained_exon	11586717	11586913	+	asmbl_11289,asmbl_11290,asmbl_11291,asmbl_11298	none	STRG.16316.3,STRG.16316.4,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030	4	STRG.16316.1,STRG.16316.5,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035	5
scaffold_19	alt_donor	8219438	8219439	-	asmbl_22286	none	STRG.22275.2	1	STRG.22275.1,STRG.22275.3,blat.proc3825158.chain_3083	3
scaffold_13	alternate_exon	13973854	13973923	+	asmbl_11414	none	blat.proc3825172.chain_1171	1	STRG.16448.2	1
scaffold_6	alt_donor	601230	601231	-	asmbl_48048,asmbl_48049,asmbl_48051	none	STRG.7125.3,STRG.7125.4,STRG.7125.5,blat.proc3825150.chain_3225	4	STRG.7125.1,STRG.7125.2,blat.proc3825150.chain_3224	3
scaffold_11	spliced_intron	3186863	3186973	+	asmbl_5409	none	blat.proc3825170.chain_1957	1	blat.proc3825170.chain_1958	1
scaffold_23	ends_in_intron	3511652	3511652	-	asmbl_30806	none	blat.proc3825160.chain_2976	1	STRG.25774.1,STRG.25774.2,blat.proc3825160.chain_2975,blat.proc3825160.chain_2978,blat.proc3825160.chain_2979	5
scaffold_2	skipped_exon	15266383	15266717	+	asmbl_25005	none	blat.proc3825164.chain_2609	1	STRG.2485.3,blat.proc3825164.chain_2606	2
scaffold_4	ends_in_intron	6844437	6844437	+	asmbl_41430	none	blat.proc3825166.chain_906	1	STRG.4530.1,Trinity_GG_19780_c0_g1_i2,blat.proc3825166.chain_907	3
scaffold_8	skipped_exon	12728585	12728827	-	asmbl_52224,asmbl_52225	none	STRG.10451.2,blat.proc3825152.chain_2671	2	STRG.10451.1,blat.proc3825152.chain_2672	2
scaffold_23	starts_in_intron	2612048	2612048	-	asmbl_30755	none	blat.proc3825160.chain_2924	1	STRG.25729.1,blat.proc3825160.chain_2923,blat.proc3825160.chain_2925,blat.proc3825160.chain_2926	4
scaffold_11	retained_intron	14532977	14533569	+	asmbl_6091,asmbl_6092	none	STRG.14252.1,Trinity_GG_25124_c0_g1_i4,blat.proc3825170.chain_2708,blat.proc3825170.chain_2709	4	STRG.14252.2,Trinity_GG_25124_c0_g1_i1,blat.proc3825170.chain_2710	3
scaffold_16	alt_acceptor	9556335	9556336	+	asmbl_16492	none	Trinity_GG_27976_c0_g1_i2,blat.proc3825174.chain_393	2	STRG.19552.1,Trinity_GG_27976_c0_g1_i1,blat.proc3825174.chain_392,blat.proc3825174.chain_394	4
scaffold_8	alt_donor	17494718	17494719	+	asmbl_53482,asmbl_53487	none	STRG.10682.3,blat.proc3825168.chain_3150,blat.proc3825168.chain_3152	3	STRG.10682.1,STRG.10682.4,blat.proc3825168.chain_3151,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	5
scaffold_14	spliced_intron	2895797	2895880	+	asmbl_11892	none	STRG.16885.1,blat.proc3825172.chain_1650	2	Trinity_GG_26594_c0_g1_i1,blat.proc3825172.chain_1651	2
scaffold_3	retained_intron	6189213	6189316	-	asmbl_38911	none	STRG.3266.4	1	blat.proc3825148.chain_3124	1
scaffold_10	skipped_exon	1290276	1292230	+	asmbl_2926	none	STRG.12028.2	1	STRG.12028.1,blat.proc3825170.chain_725	2
scaffold_11	alt_acceptor	12045727	12045728	+	asmbl_6007,asmbl_6008	none	STRG.14127.1,STRG.14127.3,blat.proc3825170.chain_2659	3	STRG.14127.2,Trinity_GG_25095_c0_g1_i2,blat.proc3825170.chain_2658	3
scaffold_7	skipped_exon	9665487	9666227	+	asmbl_50085	none	STRG.9154.1,blat.proc3825168.chain_1680	2	STRG.9154.2	1
scaffold_2	alt_acceptor	10645093	10645094	-	asmbl_23431	none	STRG.2226.1	1	STRG.2226.2	1
scaffold_9	alt_donor	9694607	9694608	-	asmbl_55234,asmbl_55237	none	STRG.11346.1,blat.proc3825152.chain_3613,blat.proc3825152.chain_3615	3	STRG.11346.2,STRG.11346.3,blat.proc3825152.chain_3614,blat.proc3825152.chain_3616	4
scaffold_23	starts_in_intron	7279164	7279164	-	asmbl_31021	none	STRG.26052.4	1	STRG.26052.2,STRG.26052.3	2
scaffold_21	retained_intron	3824094	3824282	-	asmbl_27546,asmbl_27551,asmbl_27552	none	STRG.23974.2,STRG.23974.3,blat.proc3825160.chain_1116,blat.proc3825160.chain_1119	4	STRG.23974.4,blat.proc3825160.chain_1118	2
scaffold_27	spliced_intron	6482619	6483087	-	asmbl_37057	none	STRG.29027.2	1	STRG.29027.1,blat.proc3825162.chain_2272	2
scaffold_6	retained_intron	5002265	5002285	+	asmbl_46906	none	Trinity_GG_21391_c0_g1_i1	1	STRG.7473.1	1
scaffold_21	starts_in_intron	6512858	6512858	+	asmbl_28659	none	Trinity_GG_30713_c0_g1_i2,blat.proc3825176.chain_1397	2	STRG.24176.1,blat.proc3825176.chain_1395,blat.proc3825176.chain_1398	3
scaffold_27	ends_in_intron	4005284	4005284	+	asmbl_36248,asmbl_36249,asmbl_36250,asmbl_36252,asmbl_36253	none	STRG.28871.2,STRG.28871.3,STRG.28871.5,STRG.28871.6,blat.proc3825178.chain_2038	5	STRG.28871.1,STRG.28871.4,Trinity_GG_33286_c0_g1_i7,blat.proc3825178.chain_2033,blat.proc3825178.chain_2036,blat.proc3825178.chain_2037	6
scaffold_2	starts_in_intron	18612198	18612198	-	asmbl_23803,asmbl_23806	none	blat.proc3825148.chain_2650,blat.proc3825148.chain_2651	2	blat.proc3825148.chain_2647,blat.proc3825148.chain_2648,blat.proc3825148.chain_2649	3
scaffold_6	retained_intron	13246578	13246726	-	asmbl_48903	none	blat.proc3825152.chain_501	1	STRG.8085.1,STRG.8085.2	2
scaffold_12	starts_in_intron	2334412	2334412	+	asmbl_7488	none	Trinity_GG_25287_c1_g1_i1,blat.proc3825170.chain_3001	2	STRG.14497.1	1
scaffold_9	ends_in_intron	571526	571526	+	asmbl_53770	none	STRG.10788.4	1	STRG.10788.2	1
scaffold_23	retained_intron	4315627	4315866	+	asmbl_31496,asmbl_31498	none	blat.proc3825176.chain_2778,blat.proc3825176.chain_2780	2	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2777	4
scaffold_7	ends_in_intron	17681157	17681157	-	asmbl_51432	none	blat.proc3825152.chain_1938	1	STRG.9617.1,blat.proc3825152.chain_1939,blat.proc3825152.chain_1940	3
scaffold_21	skipped_exon	6512144	6512971	+	asmbl_28661	none	blat.proc3825176.chain_1398	1	STRG.24176.1,blat.proc3825176.chain_1395	2
scaffold_5	alt_donor	10198043	10198044	-	asmbl_44324	none	blat.proc3825150.chain_2531	1	STRG.6323.1,STRG.6323.2,blat.proc3825150.chain_2527,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2533	6
scaffold_1	starts_in_intron	6968710	6968710	+	asmbl_1866	none	Trinity_GG_17626_c0_g1_i2,blat.proc3825164.chain_631	2	STRG.488.1,Trinity_GG_17626_c0_g1_i1,blat.proc3825164.chain_632	3
scaffold_24	ends_in_intron	5941098	5941098	+	asmbl_32255,asmbl_32267	none	blat.proc3825176.chain_3670,blat.proc3825176.chain_3681	2	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3665,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	16
scaffold_26	alternate_exon	5036960	5037147	+	asmbl_34941,asmbl_34949	none	STRG.28240.5,blat.proc3825178.chain_1176,blat.proc3825178.chain_1178	3	STRG.28240.1,STRG.28240.2,STRG.28240.3,blat.proc3825178.chain_1165,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1177,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180,blat.proc3825178.chain_1182	12
scaffold_25	retained_exon	3723384	3723482	+	asmbl_33458	none	STRG.27323.1,blat.proc3825178.chain_408	2	STRG.27323.2,STRG.27323.3,blat.proc3825178.chain_409	3
scaffold_16	alternate_exon	6118700	6118853	+	asmbl_16266	none	STRG.19343.3,blat.proc3825174.chain_241,blat.proc3825174.chain_243	3	blat.proc3825174.chain_240	1
scaffold_11	spliced_intron	3697980	3698259	+	asmbl_5457	none	STRG.13489.2	1	Trinity_GG_24702_c0_g1_i1,blat.proc3825170.chain_1995	2
scaffold_26	alt_donor	6351155	6351156	-	asmbl_35683	none	STRG.28335.3	1	STRG.28335.1,STRG.28335.2,blat.proc3825162.chain_1570	3
scaffold_12	retained_exon	2721927	2721995	+	asmbl_7519	none	Trinity_GG_25344_c0_g1_i5,blat.proc3825170.chain_3078	2	Trinity_GG_25344_c0_g1_i4,blat.proc3825170.chain_3075	2
scaffold_19	skipped_exon	8217962	8218493	-	asmbl_22285	none	STRG.22275.3	1	STRG.22275.1,STRG.22275.2,blat.proc3825158.chain_3083,blat.proc3825158.chain_3084,blat.proc3825158.chain_3085	5
scaffold_13	ends_in_intron	6622311	6622311	+	asmbl_10956	none	blat.proc3825172.chain_686	1	Trinity_GG_26066_c0_g1_i2,blat.proc3825172.chain_685	2
scaffold_26	skipped_exon	9773422	9774402	+	asmbl_35262,asmbl_35263,asmbl_35266,asmbl_35267	none	STRG.28516.1,STRG.28516.2,STRG.28516.3,STRG.28516.7,blat.proc3825178.chain_1649	5	STRG.28516.6	1
scaffold_2	starts_in_intron	13959534	13959534	-	asmbl_23546	none	blat.proc3825148.chain_2369	1	STRG.2385.1,blat.proc3825148.chain_2368	2
scaffold_18	alt_acceptor	282107	282108	+	asmbl_20286,asmbl_20288	none	STRG.20984.1,STRG.20984.2,blat.proc3825174.chain_1903	3	STRG.20984.4,blat.proc3825174.chain_1902	2
scaffold_6	starts_in_intron	1500203	1500203	+	asmbl_46712	none	Trinity_GG_21272_c0_g1_i2,blat.proc3825166.chain_3390	2	STRG.7191.1,STRG.7191.2,STRG.7191.3,blat.proc3825166.chain_3389	4
scaffold_1	alternate_exon	22371837	22372307	+	asmbl_2692	none	STRG.1491.6	1	STRG.1491.2,STRG.1491.5	2
scaffold_27	retained_intron	3104389	3104460	+	asmbl_36184	none	blat.proc3825178.chain_1953	1	STRG.28797.1,blat.proc3825178.chain_1954	2
scaffold_11	ends_in_intron	2770149	2770149	+	asmbl_5376	none	blat.proc3825170.chain_1948	1	STRG.13403.1	1
scaffold_1	retained_intron	3493880	3494497	-	asmbl_149,asmbl_153,asmbl_154,asmbl_155	none	STRG.221.3,blat.proc3825148.chain_214,blat.proc3825148.chain_219,blat.proc3825148.chain_221	4	STRG.221.1,STRG.221.2,STRG.221.4,blat.proc3825148.chain_213,blat.proc3825148.chain_215,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_218,blat.proc3825148.chain_220	9
scaffold_8	ends_in_intron	17400824	17400824	-	asmbl_52456	none	Trinity_GG_5925_c0_g1_i1,blat.proc3825152.chain_2911	2	STRG.10664.1,Trinity_GG_5925_c0_g1_i3,blat.proc3825152.chain_2913	3
scaffold_16	starts_in_intron	4149665	4149665	+	asmbl_16178	none	Trinity_GG_27835_c0_g1_i3,blat.proc3825174.chain_112	2	STRG.19230.1,STRG.19230.2,STRG.19230.3,Trinity_GG_27835_c0_g1_i1,blat.proc3825174.chain_113	5
scaffold_12	alt_acceptor	10050831	10050832	-	asmbl_8724	none	STRG.14983.2,blat.proc3825154.chain_3495	2	STRG.14983.1	1
scaffold_5	alt_acceptor	15111547	15111548	-	asmbl_44643,asmbl_44644	none	STRG.6701.1,STRG.6701.2,Trinity_GG_3759_c0_g1_i1,Trinity_GG_3759_c0_g1_i3,blat.proc3825150.chain_2888,blat.proc3825150.chain_2889	6	STRG.6701.3	1
scaffold_26	alt_acceptor	7484719	7484720	-	asmbl_35707	none	STRG.28383.1,blat.proc3825162.chain_1610	2	blat.proc3825162.chain_1609,blat.proc3825162.chain_1611	2
scaffold_18	starts_in_intron	7234609	7234609	+	asmbl_20724	none	STRG.21429.4,Trinity_GG_29143_c0_g1_i3,blat.proc3825174.chain_2441	3	STRG.21429.1,STRG.21429.2,STRG.21429.3,blat.proc3825174.chain_2442,blat.proc3825174.chain_2443,blat.proc3825174.chain_2444,blat.proc3825174.chain_2445	7
scaffold_7	alternate_exon	15924824	15924942	-	asmbl_51393	none	STRG.9572.3	1	STRG.9572.2	1
scaffold_28	spliced_intron	2721160	2721312	+	asmbl_37407,asmbl_37411	none	STRG.29459.2,blat.proc3825178.chain_2684	2	STRG.29459.1,STRG.29459.3,blat.proc3825178.chain_2681,blat.proc3825178.chain_2682	4
scaffold_21	ends_in_intron	6512839	6512839	+	asmbl_28660	none	blat.proc3825176.chain_1396	1	STRG.24176.1,blat.proc3825176.chain_1395	2
scaffold_24	skipped_exon	9591552	9592747	-	asmbl_33137	none	STRG.26947.1,blat.proc3825162.chain_297	2	STRG.26947.2,STRG.26947.3	2
scaffold_15	alternate_exon	12029625	12030066	+	asmbl_15513,asmbl_15514	none	STRG.18644.1,STRG.18644.2,Trinity_GG_27527_c0_g1_i1,Trinity_GG_27537_c0_g1_i2,Trinity_GG_27537_c0_g1_i3,blat.proc3825172.chain_3261,blat.proc3825172.chain_3276,blat.proc3825172.chain_3279	8	STRG.18644.3,Trinity_GG_27537_c0_g1_i4,blat.proc3825172.chain_3277	3
scaffold_4	alt_acceptor	4420004	4420005	+	asmbl_41264	none	STRG.4340.2	1	STRG.4340.1,STRG.4340.3,Trinity_GG_19730_c0_g1_i3,blat.proc3825166.chain_796	4
scaffold_300	spliced_intron	2945	3159	+	asmbl_40902,asmbl_40903,asmbl_40904,asmbl_40905	none	STRG.30272.1,STRG.30272.2,STRG.30272.3,blat.proc3825178.chain_3363,blat.proc3825178.chain_3364,blat.proc3825178.chain_3365	6	blat.proc3825178.chain_3366	1
scaffold_15	starts_in_intron	14273991	14273991	-	asmbl_14704	none	blat.proc3825156.chain_3659	1	STRG.18847.1,blat.proc3825156.chain_3658	2
scaffold_19	alt_acceptor	13155142	13155143	-	asmbl_22608	none	blat.proc3825158.chain_3473	1	STRG.22639.1,blat.proc3825158.chain_3472	2
scaffold_9	retained_intron	16282211	16282310	-	asmbl_55566	none	STRG.11778.3	1	STRG.11778.2,blat.proc3825154.chain_238	2
scaffold_26	retained_intron	6350865	6351156	-	asmbl_35681	none	STRG.28335.4,blat.proc3825162.chain_1569	2	STRG.28335.3	1
scaffold_27	starts_in_intron	3541927	3541927	+	asmbl_36207	none	blat.proc3825178.chain_1997	1	STRG.28825.1	1
scaffold_11	starts_in_intron	5669796	5669796	+	asmbl_5580	none	Trinity_GG_24823_c0_g1_i1,blat.proc3825170.chain_2181	2	STRG.13644.1,blat.proc3825170.chain_2179,blat.proc3825170.chain_2180	3
scaffold_18	retained_intron	236302	236439	-	asmbl_19567,asmbl_19570	none	STRG.20979.2,STRG.20979.3,blat.proc3825158.chain_1923	3	STRG.20979.1,blat.proc3825158.chain_1925,blat.proc3825158.chain_1926	3
scaffold_25	spliced_intron	4538956	4539139	+	asmbl_33509	none	STRG.27392.1,blat.proc3825178.chain_495	2	Trinity_GG_32413_c0_g1_i4,blat.proc3825178.chain_491	2
scaffold_14	alt_donor	7285760	7285761	+	asmbl_12145	none	STRG.17167.2,blat.proc3825172.chain_1864	2	STRG.17167.1,blat.proc3825172.chain_1865	2
scaffold_10	starts_in_intron	2660985	2660985	+	asmbl_2985	none	Trinity_GG_24031_c0_g1_i2,blat.proc3825170.chain_821	2	STRG.12080.1,Trinity_GG_24031_c0_g1_i1,blat.proc3825170.chain_820	3
scaffold_18	ends_in_intron	591569	591569	+	asmbl_20304	none	blat.proc3825174.chain_1936	1	STRG.21000.1,blat.proc3825174.chain_1932	2
scaffold_19	spliced_intron	12491455	12492121	+	asmbl_21812	none	STRG.22590.4,blat.proc3825174.chain_3625	2	STRG.22590.2	1
scaffold_25	spliced_intron	9043176	9043406	-	asmbl_34475,asmbl_34476,asmbl_34478	none	STRG.27715.1,STRG.27715.2,STRG.27715.3,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106,blat.proc3825162.chain_1107,blat.proc3825162.chain_1110	7	Trinity_GG_15563_c0_g1_i1,blat.proc3825162.chain_1105	2
scaffold_19	retained_exon	3683433	3683525	+	asmbl_21332	none	STRG.22058.2	1	STRG.22058.1,STRG.22058.3	2
scaffold_1	alternate_exon	44436	45506	-	asmbl_7	none	blat.proc3825148.chain_62	1	STRG.11.1,blat.proc3825148.chain_63,blat.proc3825148.chain_64	3
scaffold_14	retained_exon	15565850	15565903	+	asmbl_12619,asmbl_12625	none	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	3	blat.proc3825172.chain_2534	1
scaffold_12	alternate_exon	14126252	14126835	-	asmbl_8989	none	Trinity_GG_8555_c2_g1_i1,Trinity_GG_8555_c3_g1_i1,blat.proc3825156.chain_78,blat.proc3825156.chain_82,blat.proc3825156.chain_83	5	STRG.15244.3,blat.proc3825156.chain_81	2
scaffold_16	alt_acceptor	3571341	3571342	-	asmbl_16990	none	STRG.19175.3	1	STRG.19175.1,STRG.19175.2,Trinity_GG_10767_c0_g1_i5,Trinity_GG_10767_c0_g1_i8,blat.proc3825158.chain_305,blat.proc3825158.chain_306	6
scaffold_17	alt_donor	607168	607169	-	asmbl_17631,asmbl_17632	none	STRG.19912.3,STRG.19912.4	2	STRG.19912.1,STRG.19912.2	2
scaffold_7	spliced_intron	13866546	13867075	-	asmbl_51322	none	STRG.9480.4	1	STRG.9480.2,blat.proc3825152.chain_1823	2
scaffold_5	retained_intron	10196467	10196618	-	asmbl_44323	none	blat.proc3825150.chain_2530	1	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2527,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2533	7
scaffold_5	spliced_intron	11991739	11992176	-	asmbl_44429,asmbl_44430	none	STRG.6453.8,STRG.6453.9	2	STRG.6453.2,STRG.6453.5,blat.proc3825150.chain_2615	3
scaffold_26	ends_in_intron	5746696	5746696	+	asmbl_35033,asmbl_35034,asmbl_35035	none	blat.proc3825178.chain_1356,blat.proc3825178.chain_1357,blat.proc3825178.chain_1358	3	STRG.28271.1,STRG.28271.2	2
scaffold_1	alt_acceptor	9312657	9312658	+	asmbl_1983	none	STRG.627.2	1	STRG.627.1,blat.proc3825164.chain_774	2
scaffold_19	alt_donor	12491982	12491983	+	asmbl_21813	none	STRG.22590.5	1	STRG.22590.1,STRG.22590.3,STRG.22590.4,blat.proc3825174.chain_3624,blat.proc3825174.chain_3625,blat.proc3825174.chain_3626	6
scaffold_1	starts_in_intron	14356370	14356370	+	asmbl_2388	none	STRG.1036.2	1	STRG.1036.1,blat.proc3825164.chain_1182	2
scaffold_26	ends_in_intron	3347150	3347150	-	asmbl_35487	none	blat.proc3825162.chain_1272	1	STRG.28017.1,blat.proc3825162.chain_1270,blat.proc3825162.chain_1271	3
scaffold_3	starts_in_intron	10566750	10566750	+	asmbl_40274	none	blat.proc3825164.chain_3745	1	STRG.3493.1,blat.proc3825164.chain_3744	2
scaffold_12	alt_donor	4214486	4214487	+	asmbl_7592,asmbl_7593	none	STRG.14601.2,STRG.14601.3	2	STRG.14601.1,blat.proc3825170.chain_3167,blat.proc3825170.chain_3169	3
scaffold_16	spliced_intron	3707062	3707156	+	asmbl_16147,asmbl_16149,asmbl_16150	none	STRG.19177.1,blat.proc3825174.chain_106,blat.proc3825174.chain_107,blat.proc3825174.chain_108	4	Trinity_GG_27833_c1_g1_i3,blat.proc3825174.chain_104	2
scaffold_21	retained_intron	6448011	6448185	+	asmbl_28646	none	Trinity_GG_30692_c0_g1_i1,blat.proc3825176.chain_1352	2	STRG.24164.1,Trinity_GG_30692_c0_g1_i2,blat.proc3825176.chain_1353	3
scaffold_24	alt_donor	1078652	1078653	+	asmbl_32067	none	STRG.26383.3,blat.proc3825176.chain_3365	2	STRG.26383.1,blat.proc3825176.chain_3364	2
scaffold_15	spliced_intron	13706834	13706990	-	asmbl_14657	none	STRG.18800.2	1	STRG.18800.1,Trinity_GG_10560_c0_g1_i2,Trinity_GG_10560_c0_g1_i3,blat.proc3825156.chain_3649,blat.proc3825156.chain_3650	5
scaffold_21	starts_in_intron	3785876	3785876	-	asmbl_27539,asmbl_27540	none	STRG.23969.1,blat.proc3825160.chain_1065	2	blat.proc3825160.chain_1066	1
scaffold_24	retained_intron	4294010	4294192	+	asmbl_32182	none	blat.proc3825176.chain_3538	1	STRG.26591.1,blat.proc3825176.chain_3539	2
scaffold_26	retained_intron	5524354	5524425	+	asmbl_35015	none	STRG.28262.1	1	STRG.28262.4	1
scaffold_15	spliced_intron	8829496	8829673	+	asmbl_15357	none	STRG.18428.1,blat.proc3825172.chain_3103	2	Trinity_GG_27426_c0_g1_i1,blat.proc3825172.chain_3102,blat.proc3825172.chain_3104	3
scaffold_26	skipped_exon	10120348	10122046	-	asmbl_35817	none	Trinity_GG_15946_c0_g1_i13,blat.proc3825162.chain_1712	2	STRG.28530.1,STRG.28530.2,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710,blat.proc3825162.chain_1714,blat.proc3825162.chain_1715	8
scaffold_16	starts_in_intron	5510364	5510364	-	asmbl_17118,asmbl_17120	none	STRG.19312.3,Trinity_GG_10797_c1_g1_i3,blat.proc3825158.chain_364,blat.proc3825158.chain_365	4	STRG.19312.1,STRG.19312.2,blat.proc3825158.chain_361,blat.proc3825158.chain_362	4
scaffold_5	retained_intron	1162909	1162938	+	asmbl_45116	none	STRG.5666.2	1	STRG.5666.1	1
scaffold_6	retained_intron	5752777	5753623	+	asmbl_46975	none	blat.proc3825166.chain_3735	1	STRG.7534.1,blat.proc3825166.chain_3731,blat.proc3825166.chain_3732,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	6
scaffold_1	ends_in_intron	8754931	8754931	-	asmbl_488	none	Trinity_GG_326_c1_g1_i1,blat.proc3825148.chain_605	2	STRG.579.2,STRG.579.4,blat.proc3825148.chain_602,blat.proc3825148.chain_604	4
scaffold_3	alt_acceptor	13424800	13424801	-	asmbl_39259	none	STRG.3693.1,blat.proc3825148.chain_3584	2	STRG.3693.2,blat.proc3825148.chain_3583	2
scaffold_4	retained_exon	13076259	13076282	+	asmbl_41776,asmbl_41781	none	STRG.4947.1,STRG.4947.2,blat.proc3825166.chain_1379	3	STRG.4947.4,STRG.4947.5,blat.proc3825166.chain_1382	3
scaffold_6	retained_exon	10895155	10895251	+	asmbl_47303,asmbl_47304	none	STRG.7907.2,STRG.7907.3,blat.proc3825168.chain_379	3	STRG.7907.1,blat.proc3825168.chain_382	2
scaffold_3	alt_acceptor	6652934	6652935	+	asmbl_40102	none	STRG.3287.3	1	STRG.3287.1,STRG.3287.2,Trinity_GG_19166_c0_g1_i1,blat.proc3825164.chain_3533,blat.proc3825164.chain_3534	5
scaffold_7	alternate_exon	4047198	4047530	-	asmbl_50848	none	STRG.8803.3,blat.proc3825152.chain_1276	2	STRG.8803.2	1
scaffold_5	alt_acceptor	14412057	14412058	+	asmbl_45930	none	STRG.6635.1,Trinity_GG_20921_c0_g1_i1,blat.proc3825166.chain_2810	3	STRG.6635.2,Trinity_GG_20921_c0_g1_i2,blat.proc3825166.chain_2811	3
scaffold_1517	alternate_exon	387	501	-	asmbl_15961	none	STRG.30614.1,blat.proc3825162.chain_3674	2	STRG.30614.2	1
scaffold_6	spliced_intron	3057252	3057331	+	asmbl_46798,asmbl_46800,asmbl_46801,asmbl_46802	none	STRG.7319.1,STRG.7319.2,STRG.7319.3,blat.proc3825166.chain_3520,blat.proc3825166.chain_3522,blat.proc3825166.chain_3524,blat.proc3825166.chain_3526	7	blat.proc3825166.chain_3518,blat.proc3825166.chain_3521,blat.proc3825166.chain_3523	3
scaffold_19	starts_in_intron	7706754	7706754	+	asmbl_21490	none	Trinity_GG_29606_c0_g1_i4,blat.proc3825174.chain_3255	2	STRG.22255.1,STRG.22255.3,blat.proc3825174.chain_3256,blat.proc3825174.chain_3257	4
scaffold_20	retained_intron	1107445	1107556	-	asmbl_25537	none	blat.proc3825158.chain_3677	1	blat.proc3825158.chain_3675	1
scaffold_16	retained_intron	6135997	6136065	+	asmbl_16276	none	STRG.19347.2,blat.proc3825174.chain_194	2	STRG.19347.1,blat.proc3825174.chain_191,blat.proc3825174.chain_193	3
scaffold_5	retained_intron	1548461	1548523	-	asmbl_43859	none	Trinity_GG_3178_c0_g1_i2,blat.proc3825150.chain_1853	2	STRG.5712.2	1
scaffold_20	retained_intron	4262299	4262354	-	asmbl_25732	none	STRG.23110.2	1	STRG.23110.1	1
scaffold_23	retained_intron	2038927	2039048	+	asmbl_31375	none	blat.proc3825176.chain_2603	1	STRG.25686.1,blat.proc3825176.chain_2601,blat.proc3825176.chain_2602	3
scaffold_4	alt_donor	15116163	15116164	+	asmbl_41927,asmbl_41928	none	STRG.5115.1,blat.proc3825166.chain_1547	2	STRG.5115.2	1
scaffold_16	spliced_intron	2386305	2386382	-	asmbl_16965	none	STRG.19133.2	1	STRG.19133.1,blat.proc3825158.chain_271	2
scaffold_10	starts_in_intron	11967934	11967934	+	asmbl_3514	none	Trinity_GG_24389_c0_g1_i15,blat.proc3825170.chain_1444	2	STRG.12838.4,Trinity_GG_24389_c0_g1_i10,blat.proc3825170.chain_1449	3
scaffold_22	alt_donor	10320618	10320619	+	asmbl_30354	none	STRG.25386.1	1	STRG.25386.2,blat.proc3825176.chain_2361	2
scaffold_10	starts_in_intron	11602290	11602290	+	asmbl_3485	none	blat.proc3825170.chain_1428	1	STRG.12815.1,STRG.12815.2,STRG.12815.3,STRG.12815.4,blat.proc3825170.chain_1424,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1429	8
scaffold_7	spliced_intron	13205487	13205684	+	asmbl_50314,asmbl_50317	none	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1973	3	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1974,blat.proc3825168.chain_1975	3
scaffold_7	spliced_intron	15270861	15271287	+	asmbl_50428,asmbl_50430,asmbl_50431,asmbl_50433	none	STRG.9546.1,STRG.9546.3,blat.proc3825168.chain_2122,blat.proc3825168.chain_2125	4	blat.proc3825168.chain_2121,blat.proc3825168.chain_2126	2
scaffold_11	alternate_exon	3138023	3138080	-	asmbl_6533	none	blat.proc3825154.chain_2025	1	STRG.13446.1,blat.proc3825154.chain_2026	2
scaffold_1999	ends_in_intron	1383	1383	+	asmbl_22776	none	STRG.30689.2,blat.proc3825178.chain_3643	2	STRG.30689.1,blat.proc3825178.chain_3644,blat.proc3825178.chain_3645	3
scaffold_9	retained_exon	5286360	5286377	+	asmbl_54023,asmbl_54025	none	STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3572	3	STRG.11112.1,blat.proc3825168.chain_3570,blat.proc3825168.chain_3574	3
scaffold_20	starts_in_intron	5952745	5952745	-	asmbl_25809	none	blat.proc3825160.chain_291	1	STRG.23205.1,blat.proc3825160.chain_293	2
scaffold_12	spliced_intron	4617396	4617716	-	asmbl_8422,asmbl_8425	none	STRG.14640.1,STRG.14640.2,Trinity_GG_8135_c0_g1_i3,blat.proc3825154.chain_3082	4	Trinity_GG_8135_c0_g1_i2,blat.proc3825154.chain_3081	2
scaffold_28	alternate_exon	1705888	1709950	-	asmbl_38009	none	STRG.29367.1,blat.proc3825162.chain_2543	2	STRG.29367.3	1
scaffold_9	spliced_intron	11793088	11794485	-	asmbl_55304,asmbl_55305	none	STRG.11496.2,STRG.11496.4,blat.proc3825152.chain_3683	3	STRG.11496.3,blat.proc3825152.chain_3685	2
scaffold_4	ends_in_intron	5506980	5506980	+	asmbl_41358	none	blat.proc3825166.chain_793	1	STRG.4454.1,blat.proc3825166.chain_794	2
scaffold_21	alt_donor	7290944	7290945	-	asmbl_27793	none	STRG.24252.3,blat.proc3825160.chain_1398	2	STRG.24252.1,STRG.24252.2,blat.proc3825160.chain_1396,blat.proc3825160.chain_1399	4
scaffold_9	starts_in_intron	6815309	6815309	+	asmbl_54101	none	blat.proc3825168.chain_3735	1	STRG.11189.1,Trinity_GG_23553_c0_g1_i1,blat.proc3825168.chain_3734	3
scaffold_11	alternate_exon	1160579	1160634	+	asmbl_5330,asmbl_5331	none	STRG.13315.2,STRG.13315.3	2	STRG.13315.1,Trinity_GG_24587_c0_g1_i1,blat.proc3825170.chain_1782,blat.proc3825170.chain_1783,blat.proc3825170.chain_1784	5
scaffold_22	starts_in_intron	4188929	4188929	+	asmbl_29968,asmbl_29970	none	STRG.24832.2,blat.proc3825176.chain_1925,blat.proc3825176.chain_1926	3	STRG.24832.1	1
scaffold_2	retained_intron	1301947	1302291	+	asmbl_24178	none	STRG.1609.2,Trinity_GG_18242_c0_g1_i1,blat.proc3825164.chain_1789	3	STRG.1609.1,Trinity_GG_18242_c0_g1_i6,blat.proc3825164.chain_1788	3
scaffold_17	alt_donor	11038542	11038543	-	asmbl_18263	none	STRG.20664.6	1	STRG.20664.4,blat.proc3825158.chain_1651	2
scaffold_19	alt_acceptor	3684939	3684940	+	asmbl_21332,asmbl_21334,asmbl_21336	none	STRG.22058.2,STRG.22058.3,STRG.22058.5	3	blat.proc3825174.chain_3084	1
scaffold_12	starts_in_intron	5641419	5641419	-	asmbl_8520	none	Trinity_GG_8224_c0_g1_i2,blat.proc3825154.chain_3249	2	STRG.14720.1,blat.proc3825154.chain_3250	2
scaffold_26	alt_acceptor	9774173	9774174	+	asmbl_35265	none	STRG.28516.5	1	STRG.28516.3,STRG.28516.7,blat.proc3825178.chain_1649	3
scaffold_1	starts_in_intron	11177826	11177826	+	asmbl_2085	none	blat.proc3825164.chain_916	1	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_906,blat.proc3825164.chain_908,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915	11
scaffold_5	alt_acceptor	16350428	16350429	+	asmbl_46093	none	STRG.6830.1	1	Trinity_GG_21009_c0_g1_i1,blat.proc3825166.chain_2957	2
scaffold_11	skipped_exon	9458170	9459742	-	asmbl_6932	none	STRG.13976.2	1	STRG.13976.1,blat.proc3825154.chain_2499	2
scaffold_28	alt_acceptor	5241993	5241994	+	asmbl_37579	none	STRG.29677.3	1	STRG.29677.1,Trinity_GG_33753_c0_g1_i1,Trinity_GG_33753_c0_g1_i3,blat.proc3825178.chain_2846,blat.proc3825178.chain_2848	5
scaffold_16	retained_intron	11596511	11596915	-	asmbl_17352	none	STRG.19676.1,blat.proc3825158.chain_760,blat.proc3825158.chain_761	3	STRG.19676.2	1
scaffold_10	starts_in_intron	7110770	7110770	+	asmbl_3263	none	STRG.12531.4,blat.proc3825170.chain_1140	2	STRG.12531.1,STRG.12531.2,blat.proc3825170.chain_1136,blat.proc3825170.chain_1139	4
scaffold_18	retained_exon	5780359	5780463	+	asmbl_20602,asmbl_20603,asmbl_20604	none	STRG.21328.1,STRG.21328.2,blat.proc3825174.chain_2310,blat.proc3825174.chain_2314	4	blat.proc3825174.chain_2311	1
scaffold_3	alt_acceptor	10934626	10934627	-	asmbl_39123,asmbl_39124	none	STRG.3545.3,STRG.3545.4	2	STRG.3545.1,STRG.3545.2,blat.proc3825148.chain_3370,blat.proc3825148.chain_3371	4
scaffold_8	retained_intron	8600253	8600327	+	asmbl_53017	none	blat.proc3825168.chain_2672	1	STRG.10118.1,blat.proc3825168.chain_2671	2
scaffold_3	skipped_exon	17083146	17084104	-	asmbl_39535	none	STRG.3946.2	1	STRG.3946.1	1
scaffold_9	retained_intron	571217	571264	+	asmbl_53770	none	STRG.10788.4	1	STRG.10788.1	1
scaffold_18	alt_acceptor	5905505	5905506	-	asmbl_19877	none	STRG.21337.2,Trinity_GG_11944_c1_g1_i1,blat.proc3825158.chain_2263	3	STRG.21337.1,STRG.21337.3	2
scaffold_2	skipped_exon	3758002	3759036	-	asmbl_22997	none	blat.proc3825148.chain_1747	1	STRG.1808.1,blat.proc3825148.chain_1746	2
scaffold_24	starts_in_intron	6071705	6071705	+	asmbl_32281	none	STRG.26664.2,blat.proc3825176.chain_3622	2	STRG.26664.1,blat.proc3825176.chain_3624	2
scaffold_13	retained_intron	8166668	8166859	-	asmbl_9942	none	blat.proc3825156.chain_989	1	STRG.16109.1	1
scaffold_9	alt_donor	16567709	16567710	+	asmbl_54598,asmbl_54602,asmbl_54604	none	STRG.11807.1,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i21,blat.proc3825170.chain_610,blat.proc3825170.chain_616	5	STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i19,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_612,blat.proc3825170.chain_613,blat.proc3825170.chain_614,blat.proc3825170.chain_617	9
scaffold_19	spliced_intron	8753871	8754300	+	asmbl_21547,asmbl_21548	none	STRG.22336.1,blat.proc3825174.chain_3312,blat.proc3825174.chain_3313	3	blat.proc3825174.chain_3314	1
scaffold_6	starts_in_intron	16887892	16887892	-	asmbl_49177	none	blat.proc3825152.chain_821	1	STRG.8411.1,STRG.8411.2,STRG.8411.3,Trinity_GG_4777_c0_g1_i2,Trinity_GG_4777_c0_g1_i3,Trinity_GG_4777_c0_g1_i4,blat.proc3825152.chain_819,blat.proc3825152.chain_820,blat.proc3825152.chain_822	9
scaffold_6	retained_intron	12999352	12999538	-	asmbl_48866,asmbl_48867	none	STRG.8068.6,blat.proc3825152.chain_493	2	STRG.8068.5,blat.proc3825152.chain_491,blat.proc3825152.chain_496	3
scaffold_27	retained_exon	6610883	6610940	-	asmbl_37068,asmbl_37069	none	STRG.29032.1,blat.proc3825162.chain_2254	2	STRG.29032.2,blat.proc3825162.chain_2253	2
scaffold_9	alt_donor	16665147	16665148	-	asmbl_55608	none	STRG.11805.1,blat.proc3825154.chain_186	2	STRG.11805.2,blat.proc3825154.chain_185	2
scaffold_11	retained_intron	13462527	13462704	-	asmbl_7130	none	STRG.14207.1,Trinity_GG_7945_c0_g1_i4,blat.proc3825154.chain_2749	3	STRG.14207.2,STRG.14207.3,Trinity_GG_7945_c0_g1_i1,Trinity_GG_7945_c0_g1_i5,blat.proc3825154.chain_2747,blat.proc3825154.chain_2748	6
scaffold_13	starts_in_intron	14563515	14563515	-	asmbl_10200	none	blat.proc3825156.chain_1273	1	STRG.16504.5	1
scaffold_6	ends_in_intron	12626579	12626579	-	asmbl_48836	none	STRG.8021.2	1	STRG.8021.1,Trinity_GG_4556_c0_g1_i2,blat.proc3825152.chain_411	3
scaffold_11	starts_in_intron	16470863	16470863	-	asmbl_7221	none	STRG.14346.2,blat.proc3825154.chain_2812	2	STRG.14346.3,blat.proc3825154.chain_2814	2
scaffold_21	retained_intron	3175043	3175199	+	asmbl_28461	none	blat.proc3825176.chain_1140	1	STRG.23959.1,STRG.23959.2,STRG.23959.3,STRG.23959.4,STRG.23959.5,STRG.23959.7,blat.proc3825176.chain_1132,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142,blat.proc3825176.chain_1143	14
scaffold_19	alternate_exon	1740934	1740953	-	asmbl_22047	none	STRG.21930.1	1	STRG.21930.2	1
scaffold_18	skipped_exon	6269946	6270567	+	asmbl_20666	none	STRG.21358.1,blat.proc3825174.chain_2342	2	STRG.21358.2,Trinity_GG_29085_c0_g1_i1,blat.proc3825174.chain_2341	3
scaffold_14	skipped_exon	14147955	14149322	+	asmbl_12523,asmbl_12527	none	STRG.17687.2,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	3	STRG.17687.1,STRG.17687.3	2
scaffold_23	starts_in_intron	3598093	3598093	+	asmbl_31450	none	Trinity_GG_31536_c0_g1_i1,blat.proc3825176.chain_2721	2	STRG.25780.1	1
scaffold_4	retained_intron	8427515	8427786	-	asmbl_42772	none	STRG.4673.1,blat.proc3825150.chain_828	2	STRG.4673.2,Trinity_GG_2573_c0_g1_i2,blat.proc3825150.chain_829,blat.proc3825150.chain_830	4
scaffold_11	spliced_intron	17277488	17277700	-	asmbl_7260	none	Trinity_GG_8033_c1_g1_i1	1	Trinity_GG_8033_c1_g1_i2,blat.proc3825154.chain_2911	2
scaffold_3	starts_in_intron	13176342	13176342	+	asmbl_40430	none	Trinity_GG_19370_c0_g1_i3,blat.proc3825166.chain_164	2	STRG.3682.1,STRG.3682.2,blat.proc3825166.chain_165,blat.proc3825166.chain_166	4
scaffold_26	ends_in_intron	6480486	6480486	-	asmbl_35687	none	Trinity_GG_15863_c0_g1_i1,blat.proc3825162.chain_1584	2	STRG.28342.1,blat.proc3825162.chain_1585	2
scaffold_16	retained_exon	8640050	8640106	+	asmbl_16430,asmbl_16433	none	STRG.19492.2,STRG.19492.3,blat.proc3825174.chain_368	3	STRG.19492.1,Trinity_GG_27966_c0_g1_i3,blat.proc3825174.chain_366	3
scaffold_18	starts_in_intron	2753615	2753615	-	asmbl_19735	none	STRG.21135.1,blat.proc3825158.chain_2101	2	STRG.21135.2,Trinity_GG_11841_c0_g1_i1,blat.proc3825158.chain_2102	3
scaffold_5	retained_exon	10196619	10197864	-	asmbl_44326	none	STRG.6323.3	1	blat.proc3825150.chain_2531	1
scaffold_15	alt_donor	12742135	12742136	+	asmbl_15599,asmbl_15600	none	STRG.18732.1,STRG.18732.2,blat.proc3825172.chain_3378,blat.proc3825172.chain_3379	4	blat.proc3825172.chain_3377	1
scaffold_6	spliced_intron	10231662	10231807	+	asmbl_47275	none	blat.proc3825168.chain_269	1	STRG.7863.1,blat.proc3825168.chain_270	2
scaffold_18	retained_intron	2565486	2565566	-	asmbl_19729	none	STRG.21128.2	1	STRG.21128.1,blat.proc3825158.chain_2063	2
scaffold_12	alternate_exon	4786167	4786331	-	asmbl_8452,asmbl_8455	none	STRG.14660.2,blat.proc3825154.chain_3145,blat.proc3825154.chain_3150	3	STRG.14660.1,STRG.14660.3,STRG.14660.4,blat.proc3825154.chain_3147,blat.proc3825154.chain_3148,blat.proc3825154.chain_3151,blat.proc3825154.chain_3152,blat.proc3825154.chain_3153	8
scaffold_1	retained_intron	10949081	10949745	+	asmbl_2036,asmbl_2037	none	STRG.715.2,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_861	4	STRG.715.3,blat.proc3825164.chain_859,blat.proc3825164.chain_862,blat.proc3825164.chain_863,blat.proc3825164.chain_864	5
scaffold_19	alternate_exon	12425568	12441129	+	asmbl_21799	none	STRG.22571.1,blat.proc3825174.chain_3594	2	Trinity_GG_29795_c0_g1_i1,blat.proc3825174.chain_3592	2
scaffold_13	retained_intron	400122	400388	-	asmbl_9338,asmbl_9341	none	Trinity_GG_8688_c0_g2_i1,Trinity_GG_8688_c0_g2_i2,blat.proc3825156.chain_367,blat.proc3825156.chain_370	4	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366,blat.proc3825156.chain_368,blat.proc3825156.chain_369	27
scaffold_17	spliced_intron	1292002	1292412	-	asmbl_17679	none	STRG.19964.1,blat.proc3825158.chain_973	2	STRG.19964.6,blat.proc3825158.chain_970	2
scaffold_7	alt_acceptor	1219872	1219873	+	asmbl_49584	none	STRG.8629.1,Trinity_GG_22054_c0_g1_i4	2	STRG.8629.2,Trinity_GG_22054_c0_g1_i2	2
scaffold_6	alt_acceptor	299334	299335	+	asmbl_46650	none	STRG.7091.4,Trinity_GG_21228_c0_g1_i1,blat.proc3825166.chain_3316	3	STRG.7091.3,Trinity_GG_21228_c0_g1_i4,blat.proc3825166.chain_3317	3
scaffold_5	retained_intron	5738215	5738534	+	asmbl_45365,asmbl_45367	none	STRG.5992.1,STRG.5992.2,blat.proc3825166.chain_2134	3	STRG.5992.4,STRG.5992.6,blat.proc3825166.chain_2131	3
scaffold_13	skipped_exon	7504604	7506710	-	asmbl_9885,asmbl_9886,asmbl_9891	none	STRG.16047.1,STRG.16047.3,blat.proc3825156.chain_899,blat.proc3825156.chain_903,blat.proc3825156.chain_905	5	blat.proc3825156.chain_900,blat.proc3825156.chain_906,blat.proc3825156.chain_909	3
scaffold_5	alt_acceptor	1097063	1097064	-	asmbl_43820	none	blat.proc3825150.chain_1910	1	STRG.5661.1	1
scaffold_506	spliced_intron	2659	3028	+	asmbl_46501,asmbl_46504	none	STRG.30354.1,blat.proc3825178.chain_3453,blat.proc3825178.chain_3454	3	blat.proc3825178.chain_3450	1
scaffold_500	alt_donor	1334	1335	+	asmbl_46488,asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492	none	STRG.30357.1,STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6,Trinity_GG_34112_c0_g1_i2,blat.proc3825178.chain_3435	7	blat.proc3825178.chain_3434	1
scaffold_7	spliced_intron	11413023	11413205	+	asmbl_50172	none	STRG.9288.3,Trinity_GG_22465_c0_g1_i4,blat.proc3825168.chain_1794,blat.proc3825168.chain_1795	4	blat.proc3825168.chain_1793	1
scaffold_5	retained_intron	1250555	1251453	-	asmbl_43844	none	Trinity_GG_3222_c0_g1_i5,Trinity_GG_3222_c0_g1_i6,blat.proc3825150.chain_1928,blat.proc3825150.chain_1930	4	STRG.5688.1,blat.proc3825150.chain_1929,blat.proc3825150.chain_1933	3
scaffold_2	alt_acceptor	4009116	4009117	+	asmbl_24327,asmbl_24329	none	STRG.1839.1,blat.proc3825164.chain_1984,blat.proc3825164.chain_1985	3	STRG.1839.3	1
scaffold_14	spliced_intron	10479363	10479549	+	asmbl_12325	none	STRG.17398.3	1	STRG.17398.2,blat.proc3825172.chain_2141,blat.proc3825172.chain_2144	3
scaffold_28	alternate_exon	2316961	2317001	+	asmbl_37360,asmbl_37361	none	STRG.29407.1,blat.proc3825178.chain_2596,blat.proc3825178.chain_2597	3	STRG.29407.2	1
scaffold_16	alternate_exon	8589188	8589913	+	asmbl_16414,asmbl_16423	none	STRG.19490.4,blat.proc3825174.chain_374,blat.proc3825174.chain_376	3	STRG.19490.6	1
scaffold_17	ends_in_intron	8830250	8830250	-	asmbl_18122	none	blat.proc3825158.chain_1519	1	STRG.20493.1,blat.proc3825158.chain_1518	2
scaffold_4	retained_intron	10924315	10924565	-	asmbl_42872	none	STRG.4815.2,blat.proc3825150.chain_994	2	STRG.4815.1,blat.proc3825150.chain_995	2
scaffold_25	retained_intron	9043176	9043406	-	asmbl_34479	none	Trinity_GG_15563_c0_g1_i1,blat.proc3825162.chain_1105	2	STRG.27715.1,STRG.27715.2,STRG.27715.3,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106,blat.proc3825162.chain_1107,blat.proc3825162.chain_1110	7
scaffold_13	alt_acceptor	11271461	11271462	-	asmbl_10077	none	STRG.16288.2	1	STRG.16288.1,blat.proc3825156.chain_1099	2
scaffold_28	spliced_intron	5611216	5611372	-	asmbl_38299	none	STRG.29697.3,Trinity_GG_16664_c0_g1_i8,blat.proc3825162.chain_2902	3	STRG.29697.1,STRG.29697.4,STRG.29697.5,blat.proc3825162.chain_2899,blat.proc3825162.chain_2901	5
scaffold_25	alt_donor	4117390	4117391	+	asmbl_33474,asmbl_33475	none	STRG.27345.1,blat.proc3825178.chain_441,blat.proc3825178.chain_442	3	STRG.27345.2	1
scaffold_9	retained_intron	13368752	13368963	-	asmbl_55444	none	Trinity_GG_6421_c0_g1_i1,blat.proc3825154.chain_102	2	STRG.11644.1,blat.proc3825154.chain_103	2
scaffold_1	alternate_exon	4873289	4873367	-	asmbl_220	none	STRG.300.1	1	STRG.300.2	1
scaffold_4	spliced_intron	7198052	7199617	-	asmbl_42701	none	blat.proc3825150.chain_800	1	STRG.4553.1,Trinity_GG_2558_c0_g1_i4,blat.proc3825150.chain_798,blat.proc3825150.chain_799	4
scaffold_10	ends_in_intron	635744	635744	-	asmbl_3976	none	Trinity_GG_6642_c0_g1_i4,blat.proc3825154.chain_486	2	STRG.11945.1,blat.proc3825154.chain_484	2
scaffold_25	alt_donor	7339791	7339792	+	asmbl_33670	none	STRG.27588.3	1	STRG.27588.1,STRG.27588.2,STRG.27588.4,Trinity_GG_32501_c0_g1_i3,Trinity_GG_32501_c0_g1_i5,Trinity_GG_32501_c0_g1_i6,blat.proc3825178.chain_655,blat.proc3825178.chain_656,blat.proc3825178.chain_657,blat.proc3825178.chain_658,blat.proc3825178.chain_659	11
scaffold_17	alt_donor	4284440	4284441	-	asmbl_17846,asmbl_17848	none	STRG.20187.1,blat.proc3825158.chain_1188,blat.proc3825158.chain_1190	3	blat.proc3825158.chain_1189	1
scaffold_17	ends_in_intron	12090156	12090156	+	asmbl_19256	none	STRG.20737.1	1	STRG.20737.2,STRG.20737.3	2
scaffold_9	alternate_exon	3675428	3676907	-	asmbl_54926	none	STRG.10993.5	1	Trinity_GG_6077_c0_g2_i2	1
scaffold_3	retained_intron	9515750	9516729	+	asmbl_40228	none	STRG.3436.2,Trinity_GG_19245_c1_g1_i1,blat.proc3825164.chain_3679	3	STRG.3436.1,Trinity_GG_19245_c0_g1_i2,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3674,blat.proc3825164.chain_3676,blat.proc3825164.chain_3677,blat.proc3825164.chain_3678	8
scaffold_72	alt_donor	17027	17028	+	asmbl_51614	none	STRG.30111.1	1	STRG.30111.2	1
scaffold_24	starts_in_intron	8118451	8118451	+	asmbl_32411,asmbl_32413	none	blat.proc3825178.chain_50,blat.proc3825178.chain_53	2	STRG.26862.1,STRG.26862.2,blat.proc3825178.chain_51	3
scaffold_8	retained_intron	11277835	11278003	-	asmbl_52144	none	Trinity_GG_5759_c0_g1_i4,blat.proc3825152.chain_2595	2	STRG.10347.1,STRG.10347.2,STRG.10347.3,blat.proc3825152.chain_2593,blat.proc3825152.chain_2594,blat.proc3825152.chain_2596	6
scaffold_359	alt_donor	2430	2431	+	asmbl_41045	none	blat.proc3825178.chain_3402	1	STRG.30302.1	1
scaffold_16	retained_exon	7241550	7241633	-	asmbl_17177	none	STRG.19399.3	1	STRG.19399.1,STRG.19399.2,STRG.19399.4,STRG.19399.5	4
scaffold_22	retained_intron	7787082	7787160	-	asmbl_29424	none	STRG.25124.2,blat.proc3825160.chain_2276	2	STRG.25124.1,blat.proc3825160.chain_2275	2
scaffold_14	alt_acceptor	8335531	8335532	+	asmbl_12225	none	STRG.17258.2,blat.proc3825172.chain_2026	2	STRG.17258.1,blat.proc3825172.chain_2025,blat.proc3825172.chain_2027	3
scaffold_20	spliced_intron	11924841	11925165	+	asmbl_27103	none	STRG.23694.2,blat.proc3825176.chain_833	2	STRG.23694.1,blat.proc3825176.chain_832	2
scaffold_10	spliced_intron	13525424	13525835	-	asmbl_4896,asmbl_4899	none	STRG.12951.1,blat.proc3825154.chain_1460,blat.proc3825154.chain_1462	3	blat.proc3825154.chain_1461	1
scaffold_19	spliced_intron	12700478	12700502	-	asmbl_22532	none	STRG.22582.1	1	Trinity_GG_12566_c0_g1_i2,blat.proc3825158.chain_3356	2
scaffold_28	starts_in_intron	4937827	4937827	-	asmbl_38231	none	blat.proc3825162.chain_2751	1	STRG.29648.1,Trinity_GG_16581_c0_g1_i1,blat.proc3825162.chain_2749	3
scaffold_14	alt_acceptor	12632050	12632051	-	asmbl_13579,asmbl_13580,asmbl_13582,asmbl_13583	none	STRG.17582.1,STRG.17582.3,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	7	STRG.17582.5,blat.proc3825156.chain_2420	2
scaffold_22	spliced_intron	6130130	6130241	+	asmbl_30096,asmbl_30097,asmbl_30099,asmbl_30102,asmbl_30103	none	STRG.24968.1,STRG.24968.4,blat.proc3825176.chain_2118,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120	5	STRG.24968.6,Trinity_GG_31147_c0_g1_i1,blat.proc3825176.chain_2121,blat.proc3825176.chain_2122	4
scaffold_6	retained_intron	12479611	12479961	+	asmbl_47399,asmbl_47401	none	STRG.8006.1,blat.proc3825168.chain_473,blat.proc3825168.chain_477	3	STRG.8006.2,STRG.8006.3,blat.proc3825168.chain_474,blat.proc3825168.chain_475	4
scaffold_13	alternate_exon	388179	388467	-	asmbl_9329	none	STRG.15438.1,blat.proc3825156.chain_287	2	Trinity_GG_8662_c0_g1_i1,blat.proc3825156.chain_288	2
scaffold_14	alt_donor	11292036	11292037	-	asmbl_13468	none	STRG.17462.1,blat.proc3825156.chain_2265	2	STRG.17462.2	1
scaffold_20	retained_intron	10135588	10137307	+	asmbl_26938	none	STRG.23558.1,Trinity_GG_30342_c0_g1_i1,blat.proc3825176.chain_735	3	blat.proc3825176.chain_734	1
scaffold_2727	spliced_intron	835	963	-	asmbl_37236	none	STRG.30784.1	1	STRG.30784.2	1
scaffold_14	alt_donor	2388946	2388947	-	asmbl_12947	none	STRG.16855.2	1	STRG.16855.1,STRG.16855.3	2
scaffold_17	spliced_intron	11508780	11509171	+	asmbl_19228	none	STRG.20699.1,blat.proc3825174.chain_1585	2	Trinity_GG_28665_c1_g1_i1,blat.proc3825174.chain_1586	2
scaffold_2	retained_intron	15271155	15271232	+	asmbl_25015	none	blat.proc3825164.chain_2622	1	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	8
scaffold_3	retained_intron	19887827	19887892	-	asmbl_39677	none	STRG.4107.2,Trinity_GG_2250_c1_g1_i1,blat.proc3825150.chain_262	3	STRG.4107.3	1
scaffold_21	retained_intron	3192371	3192392	+	asmbl_28476,asmbl_28477,asmbl_28479	none	blat.proc3825176.chain_1092,blat.proc3825176.chain_1093,blat.proc3825176.chain_1094	3	STRG.23947.1	1
scaffold_5	starts_in_intron	14125358	14125358	-	asmbl_44590	none	blat.proc3825166.chain_2774	1	STRG.6623.1	1
scaffold_14	retained_intron	9273611	9273885	-	asmbl_13365,asmbl_13367	none	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203	2	STRG.17338.1,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204	5
scaffold_1	spliced_intron	20338943	20340702	+	asmbl_2618	none	STRG.1396.2,blat.proc3825164.chain_1596	2	STRG.1396.1,STRG.1396.3,STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	9
scaffold_11	skipped_exon	6613828	6615052	-	asmbl_6729	none	STRG.13704.2,blat.proc3825154.chain_2260	2	STRG.13704.1,blat.proc3825154.chain_2261	2
scaffold_8	starts_in_intron	9576578	9576578	-	asmbl_52053	none	blat.proc3825152.chain_2480	1	STRG.10214.1,blat.proc3825152.chain_2482	2
scaffold_17	alt_acceptor	1289952	1289953	-	asmbl_17684	none	blat.proc3825158.chain_976	1	STRG.19964.2	1
scaffold_23	spliced_intron	6289122	6289248	-	asmbl_30967,asmbl_30968,asmbl_30969,asmbl_30971,asmbl_30972	none	STRG.25975.1,STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i6,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3188,blat.proc3825160.chain_3189,blat.proc3825160.chain_3191,blat.proc3825160.chain_3193	12	STRG.25975.3,Trinity_GG_14564_c0_g1_i2,blat.proc3825160.chain_3190,blat.proc3825160.chain_3192	4
scaffold_16	spliced_intron	116383	116577	+	asmbl_15994	none	STRG.19000.1,Trinity_GG_27734_c0_g1_i2,blat.proc3825172.chain_3666,blat.proc3825172.chain_3667	4	Trinity_GG_27734_c1_g1_i1,blat.proc3825172.chain_3668	2
scaffold_26	alt_donor	10119684	10119685	-	asmbl_35816	none	Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710	2	STRG.28530.1,STRG.28530.2,STRG.28530.3,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i8,blat.proc3825162.chain_1709,blat.proc3825162.chain_1712,blat.proc3825162.chain_1714,blat.proc3825162.chain_1715	11
scaffold_22	alt_donor	11543991	11543992	+	asmbl_30408	none	STRG.25505.3	1	STRG.25505.1	1
scaffold_23	retained_intron	6290838	6290991	-	asmbl_30967,asmbl_30969,asmbl_30970	none	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190	7	STRG.25975.1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192	6
scaffold_17	alternate_exon	8250539	8250778	+	asmbl_18963	none	blat.proc3825174.chain_1220	1	STRG.20444.1,blat.proc3825174.chain_1219	2
scaffold_20	spliced_intron	11671056	11671178	+	asmbl_27085	none	Trinity_GG_30422_c0_g1_i5,blat.proc3825176.chain_883	2	Trinity_GG_30422_c0_g1_i3,blat.proc3825176.chain_884	2
scaffold_6	alt_donor	8641582	8641583	+	asmbl_47171,asmbl_47172	none	STRG.7754.2,STRG.7754.3	2	STRG.7754.1,blat.proc3825168.chain_188,blat.proc3825168.chain_189,blat.proc3825168.chain_190	4
scaffold_27	retained_intron	2793632	2795233	+	asmbl_36111	none	STRG.28760.2,Trinity_GG_33228_c1_g1_i2,blat.proc3825178.chain_1918	3	STRG.28760.1,blat.proc3825178.chain_1914,blat.proc3825178.chain_1916	3
scaffold_23	alt_donor	10233613	10233614	+	asmbl_31846	none	STRG.26235.2,blat.proc3825176.chain_3221	2	STRG.26235.1,blat.proc3825176.chain_3220,blat.proc3825176.chain_3222	3
scaffold_12	spliced_intron	10187622	10187770	-	asmbl_8734,asmbl_8736	none	STRG.14994.4,blat.proc3825154.chain_3518	2	blat.proc3825154.chain_3519	1
scaffold_10	starts_in_intron	2483540	2483540	+	asmbl_2976	none	Trinity_GG_24032_c0_g1_i2,blat.proc3825170.chain_824	2	STRG.12065.1,Trinity_GG_24032_c0_g1_i1,blat.proc3825170.chain_823	3
scaffold_4	ends_in_intron	16462813	16462813	-	asmbl_43175	none	Trinity_GG_2894_c3_g1_i1,blat.proc3825150.chain_1354	2	STRG.5222.1,Trinity_GG_2894_c1_g1_i1	2
scaffold_26	alt_acceptor	9083573	9083574	-	asmbl_35767	none	STRG.28473.3	1	STRG.28473.2,blat.proc3825162.chain_1681	2
scaffold_9	alt_donor	8395341	8395342	+	asmbl_54171,asmbl_54172	none	STRG.11261.4,blat.proc3825170.chain_62	2	STRG.11261.2,STRG.11261.3,blat.proc3825170.chain_63	3
scaffold_7	retained_intron	2515770	2515883	+	asmbl_49652	none	Trinity_GG_22096_c1_g1_i1,blat.proc3825168.chain_1186	2	Trinity_GG_22096_c1_g1_i2	1
scaffold_7	alt_acceptor	1236589	1236590	+	asmbl_49588,asmbl_49590,asmbl_49592,asmbl_49593,asmbl_49603,asmbl_49604,asmbl_49605,asmbl_49606,asmbl_49607	none	STRG.8637.4,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i5	6	STRG.8637.1,Trinity_GG_22033_c0_g1_i15,Trinity_GG_22033_c0_g1_i4,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	7
scaffold_11	alternate_exon	8478806	8478871	+	asmbl_5789	none	Trinity_GG_24888_c0_g1_i2,blat.proc3825170.chain_2293	2	STRG.13864.2,Trinity_GG_24888_c0_g1_i1,Trinity_GG_24888_c0_g1_i4,blat.proc3825170.chain_2290,blat.proc3825170.chain_2292	5
scaffold_6	spliced_intron	4713791	4713882	+	asmbl_46898	none	STRG.7460.4,Trinity_GG_21386_c0_g1_i1,blat.proc3825166.chain_3645	3	STRG.7460.1,STRG.7460.2,Trinity_GG_21386_c0_g1_i2,Trinity_GG_21386_c0_g1_i3,blat.proc3825166.chain_3643,blat.proc3825166.chain_3644	6
scaffold_26	alternate_exon	9097312	9097449	+	asmbl_35209	none	STRG.28476.2,blat.proc3825178.chain_1528	2	STRG.28476.1,Trinity_GG_33036_c0_g1_i2,blat.proc3825178.chain_1529	3
scaffold_22	alternate_exon	6216830	6216896	-	asmbl_29327	none	STRG.24984.2	1	STRG.24984.1,STRG.24984.3,STRG.24984.4	3
scaffold_9	spliced_intron	12270251	12270362	+	asmbl_54422	none	STRG.11550.1,blat.proc3825170.chain_374	2	blat.proc3825170.chain_371,blat.proc3825170.chain_373	2
scaffold_1	alternate_exon	4568582	4568844	-	asmbl_202	none	blat.proc3825148.chain_152,blat.proc3825148.chain_158	2	STRG.285.3	1
scaffold_67	retained_intron	6653	6754	-	asmbl_49511	none	STRG.30110.1,blat.proc3825162.chain_3263	2	STRG.30110.2	1
scaffold_11	retained_intron	8103129	8103233	+	asmbl_5730	none	Trinity_GG_24917_c1_g1_i8,blat.proc3825170.chain_2353	2	STRG.13823.1,STRG.13823.2,STRG.13823.3,blat.proc3825170.chain_2349,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	6
scaffold_23	starts_in_intron	246311	246311	-	asmbl_30569	none	blat.proc3825160.chain_2707	1	STRG.25548.1,STRG.25548.3,blat.proc3825160.chain_2704,blat.proc3825160.chain_2705	4
scaffold_16	ends_in_intron	9138526	9138526	-	asmbl_17267	none	blat.proc3825158.chain_635	1	STRG.19513.1,blat.proc3825158.chain_634	2
scaffold_5	spliced_intron	16583212	16583590	-	asmbl_44760	none	STRG.6850.1	1	STRG.6850.2,blat.proc3825150.chain_3026,blat.proc3825150.chain_3027,blat.proc3825150.chain_3028	4
scaffold_14	spliced_intron	15347218	15347549	-	asmbl_13711,asmbl_13712,asmbl_13714,asmbl_13715,asmbl_13716	none	STRG.17765.1,STRG.17765.2,STRG.17765.3,Trinity_GG_9998_c0_g1_i4,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2605,blat.proc3825156.chain_2607,blat.proc3825156.chain_2608,blat.proc3825156.chain_2610	9	blat.proc3825156.chain_2611	1
scaffold_13	starts_in_intron	16184078	16184078	-	asmbl_10277	none	blat.proc3825156.chain_1424	1	STRG.16664.1,STRG.16664.2,blat.proc3825156.chain_1422,blat.proc3825156.chain_1425	4
scaffold_5	spliced_intron	9079063	9079449	-	asmbl_44263	none	STRG.6246.1,Trinity_GG_3515_c0_g1_i1,blat.proc3825150.chain_2443	3	blat.proc3825150.chain_2444	1
scaffold_13	alt_acceptor	772976	772977	-	asmbl_9373	none	STRG.15463.2	1	STRG.15463.1,blat.proc3825156.chain_259	2
scaffold_14	alt_donor	7497725	7497726	+	asmbl_12168	none	STRG.17193.1	1	STRG.17193.2,STRG.17193.3,STRG.17193.4,blat.proc3825172.chain_1878	4
scaffold_5	spliced_intron	14732107	14732244	-	asmbl_44614	none	STRG.6676.1,blat.proc3825150.chain_2844	2	blat.proc3825150.chain_2845	1
scaffold_9	alt_acceptor	8032628	8032629	-	asmbl_55114,asmbl_55115	none	STRG.11231.1,STRG.11231.2,blat.proc3825152.chain_3476,blat.proc3825152.chain_3477	4	STRG.11231.3	1
scaffold_14	retained_intron	2899140	2899275	+	asmbl_11894	none	Trinity_GG_26600_c0_g1_i3,blat.proc3825172.chain_1666	2	STRG.16891.1,Trinity_GG_26600_c0_g1_i1,blat.proc3825172.chain_1665	3
scaffold_5	starts_in_intron	2620745	2620745	+	asmbl_45189	none	Trinity_GG_20472_c0_g1_i2,blat.proc3825166.chain_2014	2	STRG.5788.1,STRG.5788.2,blat.proc3825166.chain_2012,blat.proc3825166.chain_2013	4
scaffold_16	alt_acceptor	14084290	14084291	-	asmbl_17429	none	STRG.19807.1	1	blat.proc3825158.chain_843	1
scaffold_25	alt_donor	4441939	4441940	+	asmbl_33500	none	STRG.27374.2	1	STRG.27374.3,STRG.27374.4,Trinity_GG_32407_c0_g1_i2,blat.proc3825178.chain_482	4
scaffold_2	skipped_exon	11258679	11259299	+	asmbl_24747,asmbl_24748	none	STRG.2257.3,blat.proc3825164.chain_2417	2	STRG.2257.1,STRG.2257.2,blat.proc3825164.chain_2416,blat.proc3825164.chain_2418	4
scaffold_9	alternate_exon	8502430	8502479	-	asmbl_55135	none	STRG.11265.2,Trinity_GG_6223_c0_g1_i2,blat.proc3825152.chain_3474	3	STRG.11265.1,Trinity_GG_6223_c0_g1_i1,blat.proc3825152.chain_3473	3
scaffold_4	spliced_intron	3237335	3237423	-	asmbl_42425	none	STRG.4249.3	1	Trinity_GG_2372_c0_g1_i5,Trinity_GG_2372_c0_g1_i7,blat.proc3825150.chain_492,blat.proc3825150.chain_494	4
scaffold_14	retained_intron	3161005	3161274	+	asmbl_11913	none	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605	2	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	14
scaffold_11	starts_in_intron	4771217	4771217	-	asmbl_6636	none	blat.proc3825154.chain_2169	1	STRG.13571.1,STRG.13571.2,blat.proc3825154.chain_2168	3
scaffold_18	alt_donor	4729800	4729801	-	asmbl_19822	none	STRG.21268.1,blat.proc3825158.chain_2148	2	blat.proc3825158.chain_2149	1
scaffold_10	spliced_intron	17328288	17328429	+	asmbl_3764	none	blat.proc3825170.chain_1713	1	STRG.13184.1,blat.proc3825170.chain_1714	2
scaffold_6	alt_donor	14934097	14934098	-	asmbl_49043	none	STRG.8268.2	1	STRG.8268.1,blat.proc3825152.chain_645	2
scaffold_18	spliced_intron	281385	282126	+	asmbl_20287	none	STRG.20984.4,blat.proc3825174.chain_1902	2	STRG.20984.3,Trinity_GG_28852_c1_g1_i1,blat.proc3825174.chain_1904	3
scaffold_18	starts_in_intron	8728625	8728625	+	asmbl_20865	none	Trinity_GG_29229_c0_g1_i2,blat.proc3825174.chain_2608	2	STRG.21535.1,Trinity_GG_29229_c0_g1_i1,blat.proc3825174.chain_2609	3
scaffold_11	retained_intron	6251734	6252621	+	asmbl_5618	none	STRG.13692.3,Trinity_GG_24860_c0_g1_i1,blat.proc3825170.chain_2240	3	STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237	3
scaffold_26	alt_donor	5894472	5894473	-	asmbl_35640	none	Trinity_GG_15800_c0_g1_i8,blat.proc3825162.chain_1471	2	STRG.28301.3	1
scaffold_6	starts_in_intron	5194565	5194565	+	asmbl_46922	none	STRG.7496.4,blat.proc3825166.chain_3558	2	STRG.7496.1,STRG.7496.2,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i16,Trinity_GG_21344_c0_g1_i2,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3553,blat.proc3825166.chain_3554,blat.proc3825166.chain_3556	12
scaffold_15	retained_exon	4758014	4758185	-	asmbl_14154	none	STRG.18192.1,blat.proc3825156.chain_3023	2	STRG.18192.2	1
scaffold_15	retained_intron	15412571	15412679	+	asmbl_15776,asmbl_15777,asmbl_15778,asmbl_15780,asmbl_15781,asmbl_15782,asmbl_15784,asmbl_15785	none	STRG.18953.1,STRG.18953.2,STRG.18953.5,STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3607,blat.proc3825172.chain_3609,blat.proc3825172.chain_3610,blat.proc3825172.chain_3611,blat.proc3825172.chain_3612	10	STRG.18953.3,STRG.18953.4,blat.proc3825172.chain_3608	3
scaffold_1	retained_exon	6328573	6328587	+	asmbl_1831	none	STRG.431.2,blat.proc3825164.chain_572	2	STRG.431.1,Trinity_GG_17588_c0_g1_i2,blat.proc3825164.chain_571	3
scaffold_6	starts_in_intron	8462787	8462787	+	asmbl_47131	none	blat.proc3825168.chain_152	1	STRG.7725.1,STRG.7725.2,STRG.7725.3,STRG.7725.4,blat.proc3825168.chain_151,blat.proc3825168.chain_153,blat.proc3825168.chain_154	7
scaffold_10	ends_in_intron	5395853	5395853	-	asmbl_4361	none	Trinity_GG_6909_c0_g1_i1,blat.proc3825154.chain_932	2	STRG.12366.1,STRG.12366.2	2
scaffold_14	alt_acceptor	6951264	6951265	-	asmbl_13169	none	STRG.17136.1	1	STRG.17136.2,Trinity_GG_9576_c0_g1_i1,blat.proc3825156.chain_1883	3
scaffold_9	retained_intron	15589185	15589902	+	asmbl_54582,asmbl_54583	none	STRG.11750.2,blat.proc3825170.chain_533	2	blat.proc3825170.chain_530	1
scaffold_13	retained_intron	10609363	10610784	-	asmbl_10059	none	STRG.16267.1,Trinity_GG_9131_c0_g1_i4,blat.proc3825156.chain_1154,blat.proc3825156.chain_1156,blat.proc3825156.chain_1157	5	STRG.16267.2,blat.proc3825156.chain_1155	2
scaffold_8	spliced_intron	13138179	13138853	-	asmbl_52265,asmbl_52266,asmbl_52267	none	STRG.10488.1,STRG.10488.2,blat.proc3825152.chain_2748,blat.proc3825152.chain_2749,blat.proc3825152.chain_2751	5	blat.proc3825152.chain_2750	1
scaffold_1	spliced_intron	5736121	5736230	+	asmbl_1767,asmbl_1768,asmbl_1769,asmbl_1770,asmbl_1771	none	STRG.389.1,STRG.389.2,blat.proc3825164.chain_505,blat.proc3825164.chain_508,blat.proc3825164.chain_509,blat.proc3825164.chain_510	6	Trinity_GG_17561_c0_g1_i3,blat.proc3825164.chain_507	2
scaffold_17	retained_exon	5072141	5072246	+	asmbl_18803,asmbl_18804,asmbl_18806,asmbl_18808	none	STRG.20234.2,STRG.20234.3,STRG.20234.4,STRG.20234.7,Trinity_GG_28366_c0_g1_i1,blat.proc3825174.chain_1044,blat.proc3825174.chain_1046	7	STRG.20234.1,STRG.20234.5,STRG.20234.6,Trinity_GG_28366_c0_g1_i2,blat.proc3825174.chain_1045,blat.proc3825174.chain_1047	6
scaffold_2	spliced_intron	892931	893048	+	asmbl_24143,asmbl_24144	none	STRG.1566.4,blat.proc3825164.chain_1727	2	STRG.1566.1,STRG.1566.2,STRG.1566.3,STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725,blat.proc3825164.chain_1726,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730,blat.proc3825164.chain_1731	10
scaffold_21	starts_in_intron	7928459	7928459	+	asmbl_28773	none	STRG.24330.5	1	STRG.24330.3,blat.proc3825176.chain_1544	2
scaffold_20	ends_in_intron	9726762	9726762	+	asmbl_26888	none	blat.proc3825176.chain_686	1	blat.proc3825176.chain_685	1
scaffold_16	starts_in_intron	8090626	8090626	-	asmbl_17231	none	blat.proc3825158.chain_574	1	STRG.19454.1,blat.proc3825158.chain_573	2
scaffold_8	spliced_intron	9467898	9467974	-	asmbl_52035,asmbl_52037,asmbl_52038,asmbl_52039	none	STRG.10207.1,blat.proc3825152.chain_2500,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5	blat.proc3825152.chain_2499	1
scaffold_1	spliced_intron	11396225	11396399	+	asmbl_2096	none	STRG.748.1,blat.proc3825164.chain_919	2	STRG.748.2,blat.proc3825164.chain_917	2
scaffold_23	alternate_exon	2207677	2208346	-	asmbl_30715	none	STRG.25698.4	1	STRG.25698.3,STRG.25698.6	2
scaffold_5	spliced_intron	8539438	8539884	-	asmbl_44212,asmbl_44217	none	STRG.6198.3,STRG.6198.4,blat.proc3825150.chain_2421	3	blat.proc3825150.chain_2422,blat.proc3825150.chain_2423	2
scaffold_17	spliced_intron	8626201	8626531	+	asmbl_19009,asmbl_19011	none	STRG.20477.1,Trinity_GG_28498_c0_g1_i1,Trinity_GG_28498_c0_g1_i2,blat.proc3825174.chain_1274,blat.proc3825174.chain_1276	5	STRG.20477.2,Trinity_GG_28498_c0_g1_i3,blat.proc3825174.chain_1275	3
scaffold_15	skipped_exon	15409801	15410226	+	asmbl_15767	none	STRG.18930.6,blat.proc3825172.chain_3589	2	STRG.18930.1,STRG.18930.2,STRG.18930.9,blat.proc3825172.chain_3588,blat.proc3825172.chain_3590	5
scaffold_1	retained_intron	8759445	8759617	-	asmbl_487,asmbl_491,asmbl_495	none	STRG.579.2,STRG.579.4,STRG.579.5,blat.proc3825148.chain_602,blat.proc3825148.chain_604	5	blat.proc3825148.chain_601	1
scaffold_15	ends_in_intron	11415713	11415713	-	asmbl_14505	none	Trinity_GG_10443_c2_g1_i1,blat.proc3825156.chain_3453	2	STRG.18616.1,blat.proc3825156.chain_3445,blat.proc3825156.chain_3447,blat.proc3825156.chain_3449	4
scaffold_7	retained_exon	1236329	1236502	+	asmbl_49588,asmbl_49590,asmbl_49592,asmbl_49593	none	Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072,blat.proc3825168.chain_1074,blat.proc3825168.chain_1079	7	STRG.8637.4,STRG.8637.7,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	5
scaffold_6	ends_in_intron	9823440	9823440	+	asmbl_47242	none	blat.proc3825168.chain_207	1	STRG.7825.1,blat.proc3825168.chain_206	2
scaffold_2	ends_in_intron	889459	889459	+	asmbl_24128,asmbl_24132,asmbl_24133,asmbl_24135	none	STRG.1565.1,STRG.1565.2,STRG.1565.3,STRG.1565.4	4	blat.proc3825164.chain_1712,blat.proc3825164.chain_1714	2
scaffold_26	spliced_intron	3361212	3361377	+	asmbl_34773	none	STRG.28022.2,blat.proc3825178.chain_1043	2	blat.proc3825178.chain_1041	1
scaffold_4	alt_acceptor	19337178	19337179	-	asmbl_43425	none	STRG.5515.1	1	STRG.5515.2,blat.proc3825150.chain_1640	2
scaffold_20	retained_intron	11672198	11672271	-	asmbl_26172	none	STRG.23670.1,blat.proc3825160.chain_748	2	STRG.23670.3,blat.proc3825160.chain_747,blat.proc3825160.chain_750	3
scaffold_21	retained_intron	9925390	9925585	-	asmbl_27988	none	STRG.24461.2,blat.proc3825160.chain_1643	2	STRG.24461.5	1
scaffold_1	starts_in_intron	2131461	2131461	+	asmbl_1537	none	Trinity_GG_17419_c0_g1_i5,blat.proc3825164.chain_259	2	STRG.147.1,STRG.147.2,STRG.147.3,blat.proc3825164.chain_255,blat.proc3825164.chain_256,blat.proc3825164.chain_257,blat.proc3825164.chain_258	7
scaffold_13	starts_in_intron	2357226	2357226	+	asmbl_10601	none	STRG.15564.13,blat.proc3825172.chain_228	2	STRG.15564.11,STRG.15564.12,STRG.15564.2,STRG.15564.5	4
scaffold_12	ends_in_intron	4755892	4755892	-	asmbl_8442,asmbl_8443	none	STRG.14654.2,STRG.14654.3,blat.proc3825154.chain_3075,blat.proc3825154.chain_3076	4	STRG.14654.1,blat.proc3825154.chain_3077	2
scaffold_13	starts_in_intron	7193139	7193139	-	asmbl_9859	none	STRG.16016.4,blat.proc3825156.chain_959	2	STRG.16016.1,STRG.16016.2,STRG.16016.3,STRG.16016.5,blat.proc3825156.chain_957,blat.proc3825156.chain_958,blat.proc3825156.chain_960,blat.proc3825156.chain_961	8
scaffold_28	retained_intron	5022371	5022502	+	asmbl_37564,asmbl_37565	none	STRG.29654.1,STRG.29654.3	2	STRG.29654.2	1
scaffold_3	spliced_intron	13703667	13704187	+	asmbl_40448,asmbl_40449,asmbl_40450,asmbl_40452,asmbl_40454	none	STRG.3717.1,STRG.3717.2,STRG.3717.3,STRG.3717.4,Trinity_GG_19399_c0_g1_i2,blat.proc3825166.chain_217,blat.proc3825166.chain_218,blat.proc3825166.chain_219,blat.proc3825166.chain_222	9	blat.proc3825166.chain_220,blat.proc3825166.chain_223	2
scaffold_14	retained_exon	15584128	15584169	+	asmbl_12630,asmbl_12631,asmbl_12632	none	STRG.17811.1,STRG.17811.2,STRG.17811.7	3	STRG.17811.5,STRG.17811.6	2
scaffold_19	spliced_intron	11483479	11483614	-	asmbl_22409	none	STRG.22486.2,blat.proc3825158.chain_3247	2	STRG.22486.1,blat.proc3825158.chain_3250	2
scaffold_5	skipped_exon	6716069	6718508	+	asmbl_45444	none	STRG.6074.1,Trinity_GG_20600_c0_g1_i2,blat.proc3825166.chain_2239	3	STRG.6074.2,blat.proc3825166.chain_2238	2
scaffold_21	spliced_intron	730900	730999	+	asmbl_28289	none	STRG.23764.2,Trinity_GG_30474_c0_g1_i2,blat.proc3825176.chain_969	3	STRG.23764.3	1
scaffold_23	alternate_exon	10202329	10202361	-	asmbl_31139	none	STRG.26231.3	1	STRG.26231.1,STRG.26231.2,Trinity_GG_14642_c0_g1_i7,blat.proc3825160.chain_3334,blat.proc3825160.chain_3336,blat.proc3825160.chain_3339,blat.proc3825160.chain_3340	7
scaffold_3	alt_acceptor	17530909	17530910	+	asmbl_40688	none	STRG.3984.2	1	STRG.3984.1,blat.proc3825166.chain_442	2
scaffold_359	alt_donor	2444	2445	+	asmbl_41044	none	STRG.30302.1	1	blat.proc3825178.chain_3402	1
scaffold_17	retained_intron	1304001	1304135	-	asmbl_17699,asmbl_17700	none	blat.proc3825158.chain_1031,blat.proc3825158.chain_1035	2	STRG.19975.1,STRG.19975.2,blat.proc3825158.chain_1029,blat.proc3825158.chain_1030,blat.proc3825158.chain_1032,blat.proc3825158.chain_1034	6
scaffold_28	spliced_intron	9115472	9115873	-	asmbl_38490	none	STRG.29963.1,blat.proc3825162.chain_3135	2	STRG.29963.2,blat.proc3825162.chain_3136,blat.proc3825162.chain_3137	3
scaffold_1	alternate_exon	920242	921971	+	asmbl_1439	none	STRG.49.1,Trinity_GG_17320_c0_g1_i7,blat.proc3825164.chain_85	3	STRG.49.4,blat.proc3825164.chain_87	2
scaffold_19	spliced_intron	8755628	8755743	+	asmbl_21547,asmbl_21550	none	STRG.22336.1,blat.proc3825174.chain_3315,blat.proc3825174.chain_3316	3	blat.proc3825174.chain_3317	1
scaffold_9	starts_in_intron	9768774	9768774	+	asmbl_54253	none	blat.proc3825170.chain_182	1	STRG.11352.1,blat.proc3825170.chain_181	2
scaffold_12	alternate_exon	12834921	12835101	-	asmbl_8895	none	STRG.15179.3	1	STRG.15179.1,STRG.15179.2,blat.proc3825154.chain_3691	3
scaffold_22	alt_acceptor	17118	17119	+	asmbl_29792	none	STRG.24657.2	1	STRG.24657.1,Trinity_GG_30920_c0_g1_i1,blat.proc3825176.chain_1745	3
scaffold_17	alt_acceptor	9090254	9090255	-	asmbl_18148,asmbl_18149,asmbl_18150	none	STRG.20538.1,STRG.20538.2,blat.proc3825158.chain_1560,blat.proc3825158.chain_1561	4	STRG.20538.3,STRG.20538.4	2
scaffold_27	spliced_intron	7522152	7522244	+	asmbl_36467	none	STRG.29117.4	1	STRG.29117.3	1
scaffold_6	alternate_exon	1747411	1747656	+	asmbl_46737,asmbl_46741	none	STRG.7231.4,STRG.7231.5,blat.proc3825166.chain_3352	3	STRG.7231.1,STRG.7231.2,STRG.7231.3,Trinity_GG_21249_c0_g1_i1,blat.proc3825166.chain_3354	5
scaffold_17	retained_intron	9088832	9088922	-	asmbl_18148,asmbl_18149	none	STRG.20538.1,STRG.20538.2,blat.proc3825158.chain_1561	3	STRG.20538.3,blat.proc3825158.chain_1560	2
scaffold_21	alt_acceptor	11903459	11903460	+	asmbl_28945	none	STRG.24644.1	1	STRG.24644.2	1
scaffold_9	ends_in_intron	5551431	5551431	-	asmbl_55013	none	Trinity_GG_6193_c1_g1_i1,blat.proc3825152.chain_3412	2	STRG.11127.1,blat.proc3825152.chain_3407,blat.proc3825152.chain_3410,blat.proc3825152.chain_3411	4
scaffold_4	retained_intron	3383834	3384084	+	asmbl_41195	none	blat.proc3825166.chain_747	1	STRG.4276.1,STRG.4276.3,blat.proc3825166.chain_745,blat.proc3825166.chain_746,blat.proc3825166.chain_749	5
scaffold_14	skipped_exon	9294819	9297509	-	asmbl_13375,asmbl_13376	none	STRG.17341.1,STRG.17341.2	2	blat.proc3825156.chain_2166,blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	8
scaffold_4	alt_donor	4414352	4414353	+	asmbl_41245,asmbl_41260	none	STRG.4349.4,blat.proc3825166.chain_844	2	STRG.4349.1,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_851,blat.proc3825166.chain_853	5
scaffold_22	skipped_exon	9157646	9159906	-	asmbl_29519,asmbl_29520	none	STRG.25251.1,blat.proc3825160.chain_2365	2	STRG.25251.2,Trinity_GG_14095_c0_g1_i2,blat.proc3825160.chain_2364	3
scaffold_2	ends_in_intron	7780613	7780613	+	asmbl_24577	none	Trinity_GG_18484_c0_g1_i12	1	STRG.2075.1,STRG.2075.2,STRG.2075.3,STRG.2075.4,STRG.2075.5,blat.proc3825164.chain_2227,blat.proc3825164.chain_2228,blat.proc3825164.chain_2229,blat.proc3825164.chain_2234,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	11
scaffold_8	alt_donor	17454124	17454125	+	asmbl_53478	none	STRG.10670.1,Trinity_GG_23215_c0_g1_i2,blat.proc3825168.chain_3163	3	blat.proc3825168.chain_3161	1
scaffold_26	starts_in_intron	3562773	3562773	+	asmbl_34790	none	Trinity_GG_32778_c0_g1_i5,blat.proc3825178.chain_1076	2	STRG.28036.1,STRG.28036.2,STRG.28036.4	3
scaffold_2	alt_acceptor	16414060	16414061	-	asmbl_23692	none	STRG.2587.2	1	STRG.2587.1,blat.proc3825148.chain_2556,blat.proc3825148.chain_2558,blat.proc3825148.chain_2559,blat.proc3825148.chain_2560	5
scaffold_14	alt_donor	1377476	1377477	-	asmbl_12876	none	STRG.16791.2	1	STRG.16791.1,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625	3
scaffold_22	retained_intron	11544027	11544174	+	asmbl_30407	none	STRG.25505.2	1	STRG.25505.1	1
scaffold_5	alt_donor	18698542	18698543	-	asmbl_44852	none	STRG.6997.2	1	STRG.6997.1,STRG.6997.3	2
scaffold_1	spliced_intron	1993732	1994147	+	asmbl_1525,asmbl_1526,asmbl_1528	none	STRG.128.1,Trinity_GG_17420_c0_g1_i2,blat.proc3825164.chain_261,blat.proc3825164.chain_262,blat.proc3825164.chain_263	5	Trinity_GG_17420_c1_g1_i1,blat.proc3825164.chain_264	2
scaffold_1	ends_in_intron	13537642	13537642	-	asmbl_823	none	Trinity_GG_496_c0_g2_i1,blat.proc3825148.chain_934	2	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_931,blat.proc3825148.chain_932,blat.proc3825148.chain_933	7
scaffold_4	starts_in_intron	5470476	5470476	+	asmbl_41351	none	Trinity_GG_19768_c0_g1_i2,blat.proc3825166.chain_894	2	STRG.4444.1,Trinity_GG_19768_c0_g1_i1,blat.proc3825166.chain_893	3
scaffold_10	retained_exon	16257932	16258017	+	asmbl_3707,asmbl_3708	none	STRG.13106.2,Trinity_GG_24504_c0_g1_i2,blat.proc3825170.chain_1658,blat.proc3825170.chain_1659	4	STRG.13106.1,STRG.13106.3	2
scaffold_1	alt_acceptor	13883297	13883298	-	asmbl_856	none	STRG.996.4	1	STRG.996.1,STRG.996.2,STRG.996.3,blat.proc3825148.chain_1003,blat.proc3825148.chain_1004,blat.proc3825148.chain_1005	6
scaffold_5	skipped_exon	9811526	9811845	+	asmbl_45648	none	STRG.6299.1,blat.proc3825166.chain_2501	2	STRG.6299.2,blat.proc3825166.chain_2499	2
scaffold_22	ends_in_intron	900516	900516	+	asmbl_29896	none	STRG.24733.1,Trinity_GG_30991_c0_g1_i1,blat.proc3825176.chain_1871	3	Trinity_GG_30991_c0_g1_i2,Trinity_GG_30991_c0_g1_i3,blat.proc3825176.chain_1870,blat.proc3825176.chain_1872	4
scaffold_20	spliced_intron	1490437	1490472	+	asmbl_26417,asmbl_26419	none	STRG.22869.1,STRG.22869.6	2	STRG.22869.2,STRG.22869.3,STRG.22869.4,Trinity_GG_29893_c1_g1_i3,Trinity_GG_29893_c1_g1_i4,blat.proc3825176.chain_24,blat.proc3825176.chain_25,blat.proc3825176.chain_26	8
scaffold_12	alternate_exon	13403504	13404378	-	asmbl_8945	none	STRG.15219.5	1	STRG.15219.3,blat.proc3825156.chain_10	2
scaffold_4	retained_exon	248696	248852	+	asmbl_41092	none	STRG.4120.2	1	STRG.4120.1	1
scaffold_26	retained_intron	902566	902678	+	asmbl_34709	none	Trinity_GG_32665_c0_g1_i1,blat.proc3825178.chain_906	2	STRG.27895.1,blat.proc3825178.chain_907	2
scaffold_1	alt_acceptor	4614947	4614948	+	asmbl_1683,asmbl_1685,asmbl_1686	none	STRG.295.2,STRG.295.3,STRG.295.4	3	STRG.295.1,blat.proc3825164.chain_449	2
scaffold_22	starts_in_intron	2999099	2999099	-	asmbl_29164	none	blat.proc3825160.chain_1975	1	STRG.24787.1,STRG.24787.2,blat.proc3825160.chain_1973,blat.proc3825160.chain_1974	4
scaffold_2	retained_exon	1302081	1302135	+	asmbl_24177	none	STRG.1609.3,Trinity_GG_18242_c0_g1_i2,blat.proc3825164.chain_1790	3	STRG.1609.1,Trinity_GG_18242_c0_g1_i6,blat.proc3825164.chain_1788	3
scaffold_2	spliced_intron	14203673	14203696	-	asmbl_23577	none	blat.proc3825148.chain_2404	1	STRG.2414.3,blat.proc3825148.chain_2408	2
scaffold_18	alternate_exon	1390317	1391632	-	asmbl_19618	none	STRG.21025.1,Trinity_GG_11785_c0_g1_i1,blat.proc3825158.chain_1984	3	STRG.21025.4,blat.proc3825158.chain_2003	2
scaffold_2	alternate_exon	20127320	20127514	-	asmbl_23881	none	blat.proc3825164.chain_3026	1	STRG.2840.1	1
scaffold_2	retained_exon	3898797	3898886	+	asmbl_24316	none	STRG.1826.2,blat.proc3825164.chain_2000	2	STRG.1826.1,blat.proc3825164.chain_1999,blat.proc3825164.chain_2001,blat.proc3825164.chain_2004	4
scaffold_22	skipped_exon	7691662	7693717	+	asmbl_30213	none	STRG.25121.1	1	blat.proc3825176.chain_2183	1
scaffold_20	skipped_exon	11480461	11482106	+	asmbl_27052,asmbl_27054,asmbl_27059	none	STRG.23653.3,Trinity_GG_30405_c0_g1_i1,Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_845,blat.proc3825176.chain_847	5	STRG.23653.1,STRG.23653.2,Trinity_GG_30405_c0_g1_i2,blat.proc3825176.chain_846	4
scaffold_5	alt_acceptor	11991739	11991740	-	asmbl_44428,asmbl_44434	none	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3	STRG.6453.2,STRG.6453.5	2
scaffold_27	retained_exon	314159	314277	-	asmbl_36658,asmbl_36660,asmbl_36661,asmbl_36662,asmbl_36663	none	STRG.28557.1,STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1728	5	blat.proc3825162.chain_1725	1
scaffold_19	retained_intron	3559309	3561160	+	asmbl_21326,asmbl_21327	none	STRG.22045.2,Trinity_GG_29503_c0_g1_i5,Trinity_GG_29503_c1_g1_i1,Trinity_GG_29503_c2_g1_i1,blat.proc3825174.chain_3074,blat.proc3825174.chain_3075,blat.proc3825174.chain_3079,blat.proc3825174.chain_3080	8	STRG.22045.1	1
scaffold_19	ends_in_intron	12467307	12467307	-	asmbl_22491	none	Trinity_GG_12581_c2_g1_i9,blat.proc3825158.chain_3391	2	STRG.22587.1,STRG.22587.2,blat.proc3825158.chain_3392,blat.proc3825158.chain_3393,blat.proc3825158.chain_3395	5
scaffold_28	starts_in_intron	3329666	3329666	+	asmbl_37475	none	STRG.29555.2	1	STRG.29555.1,blat.proc3825178.chain_2631	2
scaffold_5	retained_intron	5755722	5756080	+	asmbl_45371,asmbl_45373	none	STRG.5996.1,Trinity_GG_20558_c0_g1_i4	2	STRG.5996.3,STRG.5996.4	2
scaffold_5	spliced_intron	18758460	18758711	-	asmbl_44875,asmbl_44876	none	STRG.7008.2,blat.proc3825150.chain_3107	2	Trinity_GG_3898_c0_g1_i3,blat.proc3825150.chain_3108	2
scaffold_24	ends_in_intron	9091588	9091588	+	asmbl_32505	none	blat.proc3825178.chain_161	1	STRG.26951.1,STRG.26951.2,STRG.26951.3,STRG.26951.4,blat.proc3825178.chain_158,blat.proc3825178.chain_160,blat.proc3825178.chain_162	7
scaffold_21	alt_donor	8278506	8278507	+	asmbl_28804,asmbl_28806	none	STRG.24368.1,STRG.24368.3	2	STRG.24368.2	1
scaffold_26	spliced_intron	3573675	3573769	+	asmbl_34795	none	STRG.28034.1,blat.proc3825178.chain_1072	2	blat.proc3825178.chain_1071	1
scaffold_25	starts_in_intron	3293500	3293500	-	asmbl_34125	none	blat.proc3825162.chain_653	1	STRG.27284.3,STRG.27284.6,STRG.27284.7,blat.proc3825162.chain_657,blat.proc3825162.chain_658	5
scaffold_2	alt_acceptor	13995435	13995436	+	asmbl_24862,asmbl_24864	none	STRG.2397.1,STRG.2397.3	2	STRG.2397.2	1
scaffold_26	skipped_exon	3343557	3345562	-	asmbl_35484	none	STRG.28013.3	1	STRG.28013.1,STRG.28013.2,blat.proc3825162.chain_1262	3
scaffold_16	alternate_exon	7115699	7116003	-	asmbl_17163	none	STRG.19389.2,Trinity_GG_10884_c1_g1_i1,blat.proc3825158.chain_526	3	Trinity_GG_10884_c0_g1_i1,blat.proc3825158.chain_524	2
scaffold_9	retained_intron	8395341	8395484	+	asmbl_54167,asmbl_54170,asmbl_54173	none	STRG.11261.1,STRG.11261.2,blat.proc3825170.chain_58,blat.proc3825170.chain_61	4	STRG.11261.4	1
scaffold_14	spliced_intron	1361497	1361623	-	asmbl_12870	none	STRG.16786.2	1	STRG.16786.1,Trinity_GG_9406_c0_g1_i2	2
scaffold_27	alternate_exon	3054770	3054965	+	asmbl_36177	none	STRG.28792.2,blat.proc3825178.chain_1823	2	STRG.28792.1,blat.proc3825178.chain_1821	2
scaffold_7	alt_acceptor	2957967	2957968	-	asmbl_50776	none	STRG.8718.1,blat.proc3825152.chain_1182	2	STRG.8718.2,blat.proc3825152.chain_1181	2
scaffold_11	ends_in_intron	5821564	5821564	-	asmbl_6681	none	blat.proc3825154.chain_2218	1	STRG.13648.1,blat.proc3825154.chain_2216	2
scaffold_2	alternate_exon	6517217	6517310	+	asmbl_24472,asmbl_24477	none	STRG.2022.1,STRG.2022.2,Trinity_GG_18449_c0_g1_i2	3	STRG.2022.5,blat.proc3825164.chain_2143	2
scaffold_2	alt_donor	8068255	8068256	-	asmbl_23311	none	STRG.2103.2,Trinity_GG_1161_c0_g1_i1,blat.proc3825148.chain_2113	3	STRG.2103.1	1
scaffold_506	alt_donor	2749	2750	+	asmbl_46503,asmbl_46505	none	STRG.30354.2,blat.proc3825178.chain_3451	2	STRG.30354.1,blat.proc3825178.chain_3453,blat.proc3825178.chain_3454	3
scaffold_1	spliced_intron	5734339	5734453	+	asmbl_1766,asmbl_1767,asmbl_1770	none	STRG.389.1,STRG.389.2,blat.proc3825164.chain_506,blat.proc3825164.chain_508	4	blat.proc3825164.chain_505,blat.proc3825164.chain_509	2
scaffold_5	alt_donor	9579659	9579660	-	asmbl_44290	none	blat.proc3825150.chain_2476	1	STRG.6278.1	1
scaffold_9	alternate_exon	12177375	12177403	+	asmbl_54418	none	STRG.11539.1	1	STRG.11539.2,Trinity_GG_23729_c0_g1_i1,blat.proc3825170.chain_322	3
scaffold_10	spliced_intron	11907708	11908477	+	asmbl_3501,asmbl_3503	none	STRG.12828.1,Trinity_GG_24345_c0_g1_i2,Trinity_GG_24345_c0_g1_i4,blat.proc3825170.chain_1354,blat.proc3825170.chain_1355	5	STRG.12828.2,Trinity_GG_24345_c0_g1_i3,blat.proc3825170.chain_1352,blat.proc3825170.chain_1353	4
scaffold_6	alternate_exon	2929494	2929937	-	asmbl_48194,asmbl_48197	none	STRG.7297.1,STRG.7297.4,blat.proc3825150.chain_3331	3	STRG.7297.2,blat.proc3825150.chain_3332	2
scaffold_25	starts_in_intron	5779013	5779013	+	asmbl_33582	none	STRG.27472.3	1	STRG.27472.1,STRG.27472.2,blat.proc3825178.chain_583	3
scaffold_2	retained_intron	1598188	1598295	+	asmbl_24212,asmbl_24213,asmbl_24214	none	STRG.1627.2,STRG.1627.3,STRG.1627.4	3	STRG.1627.1,blat.proc3825164.chain_1823,blat.proc3825164.chain_1824	3
scaffold_20	retained_intron	11383090	11383164	+	asmbl_27032,asmbl_27034,asmbl_27035,asmbl_27036,asmbl_27037,asmbl_27038,asmbl_27039	none	STRG.23648.1,STRG.23648.2,STRG.23648.3,STRG.23648.4,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i1,Trinity_GG_30352_c0_g1_i3,Trinity_GG_30352_c0_g1_i4,blat.proc3825176.chain_757,blat.proc3825176.chain_759,blat.proc3825176.chain_760	12	blat.proc3825176.chain_758	1
scaffold_2	starts_in_intron	20443503	20443503	+	asmbl_25334	none	Trinity_GG_18926_c0_g1_i1,blat.proc3825164.chain_3100	2	STRG.2888.1,Trinity_GG_18926_c0_g1_i2,blat.proc3825164.chain_3099	3
scaffold_1	spliced_intron	6830779	6830889	-	asmbl_383,asmbl_384	none	STRG.474.1,STRG.474.2,blat.proc3825148.chain_463,blat.proc3825148.chain_465	4	blat.proc3825148.chain_462	1
scaffold_10	starts_in_intron	2751799	2751799	+	asmbl_3009	none	Trinity_GG_24049_c0_g1_i3,blat.proc3825170.chain_859	2	STRG.12094.1,blat.proc3825170.chain_860,blat.proc3825170.chain_861	3
scaffold_1	retained_intron	1432116	1432283	-	asmbl_69	none	STRG.86.1,Trinity_GG_1_c0_g1_i2,blat.proc3825148.chain_2	3	Trinity_GG_1_c0_g1_i1,blat.proc3825148.chain_1	2
scaffold_19	retained_intron	12972869	12973050	-	asmbl_22574	none	STRG.22618.3	1	STRG.22618.1,Trinity_GG_12569_c0_g1_i1,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3362,blat.proc3825158.chain_3363	7
scaffold_12	alt_acceptor	5509944	5509945	+	asmbl_7659,asmbl_7660	none	STRG.14707.1,blat.proc3825170.chain_3234,blat.proc3825170.chain_3235	3	STRG.14707.2,STRG.14707.3	2
scaffold_2	ends_in_intron	16087504	16087504	-	asmbl_23666	none	Trinity_GG_1349_c2_g1_i1,blat.proc3825148.chain_2440	2	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2435,blat.proc3825148.chain_2436,blat.proc3825148.chain_2437,blat.proc3825148.chain_2438	6
scaffold_27	alt_donor	6250431	6250432	+	asmbl_36391	none	STRG.29015.1,blat.proc3825178.chain_2226	2	STRG.29015.2	1
scaffold_21	alternate_exon	386395	386492	-	asmbl_27303	none	STRG.23729.2	1	STRG.23729.1,Trinity_GG_13221_c0_g1_i1,blat.proc3825160.chain_842	3
scaffold_7	spliced_intron	12649977	12650680	-	asmbl_51262	none	STRG.9385.3	1	blat.proc3825152.chain_1732	1
scaffold_19	retained_intron	12700478	12700502	-	asmbl_22531	none	Trinity_GG_12566_c0_g1_i2,blat.proc3825158.chain_3356	2	STRG.22582.1	1
scaffold_2	spliced_intron	5200440	5200571	+	asmbl_24402	none	STRG.1940.3	1	STRG.1940.2,Trinity_GG_18384_c0_g1_i2,blat.proc3825164.chain_2047	3
scaffold_28	alternate_exon	7154425	7154489	+	asmbl_37634	none	STRG.29775.2,blat.proc3825178.chain_2927	2	STRG.29775.1,blat.proc3825178.chain_2928	2
scaffold_15	spliced_intron	2467971	2467990	-	asmbl_14011	none	STRG.18028.1	1	Trinity_GG_10137_c0_g1_i1	1
scaffold_9	starts_in_intron	15384031	15384031	+	asmbl_54564,asmbl_54565	none	STRG.11739.4,blat.proc3825170.chain_500	2	STRG.11739.1,STRG.11739.2,STRG.11739.3,blat.proc3825170.chain_498,blat.proc3825170.chain_499,blat.proc3825170.chain_501,blat.proc3825170.chain_502,blat.proc3825170.chain_503	8
scaffold_21	alternate_exon	256483	256741	-	asmbl_27287	none	Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_813	2	STRG.23725.5,blat.proc3825160.chain_807,blat.proc3825160.chain_811,blat.proc3825160.chain_812	4
scaffold_5	starts_in_intron	16203074	16203074	-	asmbl_44746	none	blat.proc3825150.chain_3002	1	blat.proc3825150.chain_3001	1
scaffold_11	alt_donor	4716018	4716019	+	asmbl_5499,asmbl_5502	none	STRG.13556.1,STRG.13556.2,blat.proc3825170.chain_2057	3	STRG.13556.3	1
scaffold_16	starts_in_intron	6107971	6107971	-	asmbl_17140	none	blat.proc3825158.chain_502	1	STRG.19342.1,blat.proc3825158.chain_498,blat.proc3825158.chain_499	3
scaffold_20	alternate_exon	6948694	6948956	-	asmbl_25857	none	STRG.23269.6,blat.proc3825160.chain_308	2	STRG.23269.2,STRG.23269.3,STRG.23269.5,blat.proc3825160.chain_305	4
scaffold_15	alternate_exon	12436773	12438225	+	asmbl_15569	none	blat.proc3825172.chain_3343	1	blat.proc3825172.chain_3339	1
scaffold_28	ends_in_intron	2580955	2580955	+	asmbl_37381	none	blat.proc3825178.chain_2617	1	STRG.29432.1,blat.proc3825178.chain_2618	2
scaffold_9	alternate_exon	9861402	9870173	-	asmbl_55242	none	STRG.11356.1,Trinity_GG_6280_c0_g1_i6,blat.proc3825152.chain_3582	3	STRG.11356.4,Trinity_GG_6280_c2_g1_i1,blat.proc3825152.chain_3585,blat.proc3825152.chain_3588	4
scaffold_23	starts_in_intron	1541485	1541485	-	asmbl_30660	none	blat.proc3825160.chain_2801	1	STRG.25632.1,STRG.25632.3,blat.proc3825160.chain_2802,blat.proc3825160.chain_2803	4
scaffold_6	retained_intron	2909228	2909325	+	asmbl_46788	none	Trinity_GG_21339_c0_g1_i4,blat.proc3825166.chain_3533	2	STRG.7298.2,Trinity_GG_21339_c0_g1_i1,Trinity_GG_21339_c0_g1_i9,blat.proc3825166.chain_3530,blat.proc3825166.chain_3531	5
scaffold_1	retained_exon	3497332	3497448	-	asmbl_147,asmbl_148,asmbl_149,asmbl_151,asmbl_152,asmbl_153,asmbl_154	none	STRG.221.1,STRG.221.2,blat.proc3825148.chain_213,blat.proc3825148.chain_214,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_218,blat.proc3825148.chain_219,blat.proc3825148.chain_221	9	STRG.221.4,blat.proc3825148.chain_215,blat.proc3825148.chain_220	3
scaffold_13	alternate_exon	8347918	8348098	+	asmbl_11122	none	STRG.16126.2,blat.proc3825172.chain_910	2	Trinity_GG_26182_c0_g1_i3,blat.proc3825172.chain_912	2
scaffold_11	alt_acceptor	12045724	12045725	+	asmbl_6006	none	STRG.14127.2,Trinity_GG_25095_c0_g1_i2,blat.proc3825170.chain_2658	3	STRG.14127.1,STRG.14127.3,blat.proc3825170.chain_2659	3
scaffold_13	spliced_intron	7935394	7935495	-	asmbl_9913,asmbl_9914,asmbl_9915,asmbl_9916,asmbl_9917,asmbl_9918	none	STRG.16070.1,STRG.16070.2,STRG.16070.3,blat.proc3825156.chain_874,blat.proc3825156.chain_875,blat.proc3825156.chain_876,blat.proc3825156.chain_877,blat.proc3825156.chain_878	8	STRG.16070.4	1
scaffold_14	starts_in_intron	12763591	12763591	-	asmbl_13600	none	STRG.17591.5	1	STRG.17591.1,STRG.17591.4,blat.proc3825156.chain_2478,blat.proc3825156.chain_2479,blat.proc3825156.chain_2480	5
scaffold_11	alt_acceptor	11644951	11644952	+	asmbl_5990	none	STRG.14094.1,blat.proc3825170.chain_2610	2	blat.proc3825170.chain_2611	1
scaffold_9	retained_exon	4898459	4898500	+	asmbl_53969	none	STRG.11064.1	1	blat.proc3825168.chain_3562	1
scaffold_15	alt_donor	2990687	2990688	-	asmbl_14070	none	STRG.18083.3,blat.proc3825156.chain_2908	2	STRG.18083.1,blat.proc3825156.chain_2909	2
scaffold_4	retained_intron	5648305	5648753	-	asmbl_42622,asmbl_42629	none	Trinity_GG_2475_c1_g1_i2,blat.proc3825150.chain_673,blat.proc3825150.chain_674	3	STRG.4472.1,blat.proc3825150.chain_669,blat.proc3825150.chain_670,blat.proc3825150.chain_671	4
scaffold_20	retained_intron	11948483	11948717	-	asmbl_26205	none	STRG.23700.3,blat.proc3825160.chain_680	2	blat.proc3825160.chain_679,blat.proc3825160.chain_682	2
scaffold_14	retained_intron	405268	405642	+	asmbl_11747,asmbl_11751	none	STRG.16734.1,STRG.16734.6,Trinity_GG_26526_c0_g1_i5,Trinity_GG_26526_c0_g1_i6,blat.proc3825172.chain_1510,blat.proc3825172.chain_1513	6	STRG.16734.2,STRG.16734.3,STRG.16734.4,blat.proc3825172.chain_1502,blat.proc3825172.chain_1508	5
scaffold_6	starts_in_intron	18087279	18087279	+	asmbl_47816	none	STRG.8502.4,Trinity_GG_22016_c2_g1_i1,blat.proc3825168.chain_1026	3	blat.proc3825168.chain_1021	1
scaffold_7	spliced_intron	5916677	5917155	-	asmbl_50900	none	STRG.8897.3,blat.proc3825152.chain_1285	2	blat.proc3825152.chain_1286,blat.proc3825152.chain_1288	2
scaffold_9	alt_donor	12631107	12631108	+	asmbl_54452,asmbl_54453	none	STRG.11586.4,blat.proc3825170.chain_403	2	STRG.11586.3,STRG.11586.5,blat.proc3825170.chain_401,blat.proc3825170.chain_405	4
scaffold_21	retained_intron	10497987	10498087	-	asmbl_28049	none	blat.proc3825160.chain_1742	1	STRG.24519.1,STRG.24519.2,blat.proc3825160.chain_1740,blat.proc3825160.chain_1741,blat.proc3825160.chain_1743,blat.proc3825160.chain_1745	6
scaffold_2	alt_donor	10170274	10170275	-	asmbl_23406	none	STRG.2206.2,Trinity_GG_1225_c1_g1_i5,blat.proc3825148.chain_2221	3	STRG.2206.3	1
scaffold_22	alt_donor	9124218	9124219	-	asmbl_29514	none	STRG.25245.3	1	STRG.25245.1,STRG.25245.2	2
scaffold_5	retained_intron	18713113	18713290	-	asmbl_44864,asmbl_44866	none	STRG.6999.1,STRG.6999.2,Trinity_GG_3901_c0_g1_i1,blat.proc3825150.chain_3113	4	STRG.6999.3,Trinity_GG_3901_c0_g1_i2,blat.proc3825150.chain_3112	3
scaffold_3	skipped_exon	6043268	6044119	-	asmbl_38881,asmbl_38882,asmbl_38883	none	STRG.3259.4,STRG.3259.6,STRG.3259.7	3	STRG.3259.1	1
scaffold_11	ends_in_intron	14585496	14585496	+	asmbl_6097	none	blat.proc3825170.chain_2700	1	STRG.14259.1,STRG.14259.2,STRG.14259.3,blat.proc3825170.chain_2699,blat.proc3825170.chain_2703	5
scaffold_3	retained_intron	13648767	13648874	-	asmbl_39276	none	STRG.3709.1,Trinity_GG_2039_c0_g1_i2,blat.proc3825148.chain_3601	3	STRG.3709.2,Trinity_GG_2039_c0_g1_i1,blat.proc3825148.chain_3600	3
scaffold_2	alternate_exon	8070000	8070045	-	asmbl_23314	none	STRG.2104.2	1	STRG.2104.1,blat.proc3825148.chain_2112	2
scaffold_4	alternate_exon	13763116	13763615	-	asmbl_43005	none	blat.proc3825150.chain_1141	1	STRG.4997.2,blat.proc3825150.chain_1144	2
scaffold_28	alt_acceptor	2594803	2594804	-	asmbl_38065,asmbl_38066	none	STRG.29435.1,STRG.29435.2,blat.proc3825162.chain_2632	3	STRG.29435.3,blat.proc3825162.chain_2633	2
scaffold_9	retained_intron	12272920	12273070	-	asmbl_55366	none	blat.proc3825154.chain_20	1	STRG.11551.1,blat.proc3825154.chain_19	2
scaffold_17	alt_donor	3143460	3143461	-	asmbl_17805	none	STRG.20099.2	1	STRG.20099.1,STRG.20099.3,Trinity_GG_11251_c0_g1_i1,blat.proc3825158.chain_1092	4
scaffold_12	spliced_intron	16182802	16183019	-	asmbl_9103,asmbl_9104	none	STRG.15375.1,STRG.15375.2,Trinity_GG_8604_c0_g1_i1,Trinity_GG_8604_c0_g1_i2,blat.proc3825156.chain_185,blat.proc3825156.chain_186	6	STRG.15375.3	1
scaffold_10	starts_in_intron	3038905	3038905	+	asmbl_3023,asmbl_3024	none	STRG.12119.2,blat.proc3825170.chain_806	2	STRG.12119.1,blat.proc3825170.chain_805	2
scaffold_19	spliced_intron	5155289	5155500	+	asmbl_21357	none	STRG.22084.4,blat.proc3825174.chain_3026	2	STRG.22084.2,blat.proc3825174.chain_3025	2
scaffold_2	retained_intron	16280381	16280649	+	asmbl_25106	none	blat.proc3825164.chain_2775	1	STRG.2566.1,Trinity_GG_18728_c0_g1_i10,blat.proc3825164.chain_2769	3
scaffold_17	retained_intron	13957425	13957742	+	asmbl_19367	none	Trinity_GG_28775_c0_g1_i2,blat.proc3825174.chain_1768	2	STRG.20871.1,Trinity_GG_28775_c0_g1_i1,Trinity_GG_28775_c0_g1_i3,blat.proc3825174.chain_1766,blat.proc3825174.chain_1767	5
scaffold_18	skipped_exon	1753434	1754444	-	asmbl_19643	none	blat.proc3825158.chain_1949	1	STRG.21065.1,blat.proc3825158.chain_1948,blat.proc3825158.chain_1950	3
scaffold_17	retained_intron	6684218	6684381	+	asmbl_18864	none	STRG.20322.2,blat.proc3825174.chain_1156	2	STRG.20322.1,blat.proc3825174.chain_1159	2
scaffold_2	retained_intron	2544294	2544550	-	asmbl_22901	none	STRG.1700.3	1	STRG.1700.1,STRG.1700.2,blat.proc3825148.chain_1645,blat.proc3825148.chain_1647	4
scaffold_1	retained_intron	15888475	15889037	+	asmbl_2456	none	STRG.1119.2,blat.proc3825164.chain_1260	2	STRG.1119.3	1
scaffold_21	starts_in_intron	4446572	4446572	-	asmbl_27572	none	STRG.24008.1,blat.proc3825160.chain_1131	2	STRG.24008.2,Trinity_GG_13380_c0_g1_i1,blat.proc3825160.chain_1132	3
scaffold_5	alternate_exon	4660585	4660634	-	asmbl_43979	none	STRG.5923.2	1	STRG.5923.1	1
scaffold_11	alternate_exon	16253633	16253777	+	asmbl_6144	none	STRG.14327.3	1	STRG.14327.2	1
scaffold_20	alternate_exon	4181812	4181944	+	asmbl_26562	none	STRG.23107.2,Trinity_GG_30051_c0_g1_i1	2	STRG.23107.1,blat.proc3825176.chain_269	2
scaffold_8	retained_exon	1340797	1340880	+	asmbl_52689	none	blat.proc3825168.chain_2213	1	STRG.9765.1	1
scaffold_12	alternate_exon	7645279	7650034	+	asmbl_7776	none	STRG.14846.1,Trinity_GG_25513_c0_g2_i1,blat.proc3825170.chain_3387	3	STRG.14846.3,Trinity_GG_25513_c0_g1_i1,blat.proc3825170.chain_3385	3
scaffold_26	alt_acceptor	2241320	2241321	-	asmbl_35442	none	STRG.27954.1,blat.proc3825162.chain_1258	2	STRG.27954.2,blat.proc3825162.chain_1257	2
scaffold_6	spliced_intron	573750	573950	+	asmbl_46667	none	STRG.7115.2,blat.proc3825166.chain_3277	2	STRG.7115.1,Trinity_GG_21206_c0_g1_i1,blat.proc3825166.chain_3279	3
scaffold_13	skipped_exon	1524599	1526885	-	asmbl_9414,asmbl_9418	none	STRG.15516.2,STRG.15516.4,Trinity_GG_8698_c0_g1_i5,blat.proc3825156.chain_405	4	STRG.15516.3,Trinity_GG_8698_c0_g1_i1,blat.proc3825156.chain_404	3
scaffold_17	alternate_exon	8885702	8888498	+	asmbl_19044	none	STRG.20512.1,Trinity_GG_28552_c1_g1_i1,blat.proc3825174.chain_1371,blat.proc3825174.chain_1373	4	STRG.20512.2,Trinity_GG_28552_c0_g1_i2,blat.proc3825174.chain_1372	3
scaffold_1	starts_in_intron	12758113	12758113	-	asmbl_758	none	Trinity_GG_445_c0_g1_i6,blat.proc3825148.chain_846	2	STRG.897.1,STRG.897.2,blat.proc3825148.chain_843,blat.proc3825148.chain_845	4
scaffold_28	ends_in_intron	5023757	5023757	+	asmbl_37565	none	STRG.29654.3	1	STRG.29654.1,STRG.29654.2,blat.proc3825178.chain_2770	3
scaffold_7	alt_acceptor	806356	806357	+	asmbl_49567	none	STRG.8623.2	1	STRG.8623.1,blat.proc3825168.chain_1125,blat.proc3825168.chain_1127,blat.proc3825168.chain_1129,blat.proc3825168.chain_1130	5
scaffold_22	skipped_exon	9243628	9245873	+	asmbl_30303	none	STRG.25270.1,blat.proc3825176.chain_2349	2	STRG.25270.2,blat.proc3825176.chain_2348	2
scaffold_1	retained_intron	20339758	20340702	+	asmbl_2615,asmbl_2616,asmbl_2617,asmbl_2619	none	STRG.1396.1,STRG.1396.3,STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	9	blat.proc3825164.chain_1591	1
scaffold_20	alt_acceptor	1624127	1624128	-	asmbl_25596	none	STRG.22899.1	1	STRG.22899.2,STRG.22899.3	2
scaffold_18	alternate_exon	2004590	2004667	-	asmbl_19685	none	STRG.21105.1,blat.proc3825158.chain_2090	2	STRG.21105.2,STRG.21105.3	2
scaffold_8	alternate_exon	16385235	16385406	+	asmbl_53455	none	STRG.10620.3	1	STRG.10620.4,Trinity_GG_23226_c0_g1_i6,blat.proc3825168.chain_3193	3
scaffold_14	retained_exon	7028469	7028528	+	asmbl_12125	none	STRG.17153.1,blat.proc3825172.chain_1933	2	blat.proc3825172.chain_1932	1
scaffold_14	skipped_exon	3160506	3161274	+	asmbl_11917	none	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	14
scaffold_18	spliced_intron	9787942	9788236	-	asmbl_20086	none	STRG.21584.1	1	Trinity_GG_12062_c0_g1_i2,blat.proc3825158.chain_2495,blat.proc3825158.chain_2496	3
scaffold_24	ends_in_intron	5938245	5938245	+	asmbl_32257	none	blat.proc3825176.chain_3687	1	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	13
scaffold_14	alternate_exon	8008700	8010469	+	asmbl_12185	none	STRG.17217.1,blat.proc3825172.chain_1980	2	STRG.17217.2,STRG.17217.3	2
scaffold_531	alternate_exon	1153	1208	-	asmbl_46542	none	STRG.30367.1	1	STRG.30367.2	1
scaffold_21	spliced_intron	1300424	1301225	-	asmbl_27406,asmbl_27408,asmbl_27409	none	STRG.23810.4,STRG.23810.5,Trinity_GG_13281_c0_g1_i1,blat.proc3825160.chain_950	4	STRG.23810.1,STRG.23810.3,Trinity_GG_13281_c0_g1_i2,Trinity_GG_13281_c0_g1_i3,blat.proc3825160.chain_949,blat.proc3825160.chain_951	6
scaffold_5	retained_exon	15418245	15418370	-	asmbl_44666	none	STRG.6728.3	1	STRG.6728.2,blat.proc3825150.chain_2878	2
scaffold_12	starts_in_intron	8556920	8556920	+	asmbl_7821	none	Trinity_GG_25550_c0_g1_i1,blat.proc3825170.chain_3459	2	STRG.14879.1,blat.proc3825170.chain_3460,blat.proc3825170.chain_3461	3
scaffold_27	skipped_exon	2814408	2815090	+	asmbl_36123	none	STRG.28763.3	1	STRG.28763.2,Trinity_GG_33230_c1_g1_i2,blat.proc3825178.chain_1927	3
scaffold_25	retained_intron	5377112	5377334	-	asmbl_34252	none	STRG.27450.1,Trinity_GG_15394_c0_g1_i1,blat.proc3825162.chain_815	3	STRG.27450.2,blat.proc3825162.chain_816	2
scaffold_11	alt_donor	8597285	8597286	+	asmbl_5812	none	STRG.13876.2	1	STRG.13876.1,STRG.13876.3,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i3,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2448,blat.proc3825170.chain_2449	9
scaffold_15	retained_exon	14633628	14634042	-	asmbl_14732	none	STRG.18877.1,blat.proc3825156.chain_3750	2	STRG.18877.3,STRG.18877.4,blat.proc3825156.chain_3748	3
scaffold_4	starts_in_intron	17596008	17596008	+	asmbl_42067	none	blat.proc3825166.chain_1727	1	STRG.5350.1,blat.proc3825166.chain_1728	2
scaffold_23	starts_in_intron	1126719	1126719	+	asmbl_31308	none	Trinity_GG_31398_c0_g1_i1,blat.proc3825176.chain_2508	2	STRG.25593.1,STRG.25593.2,blat.proc3825176.chain_2509,blat.proc3825176.chain_2510	4
scaffold_15	starts_in_intron	4982752	4982752	-	asmbl_14180	none	STRG.18211.2,blat.proc3825156.chain_3071	2	STRG.18211.1,STRG.18211.3,STRG.18211.4,blat.proc3825156.chain_3070,blat.proc3825156.chain_3072	5
scaffold_10	ends_in_intron	13581844	13581844	-	asmbl_4915	none	Trinity_GG_7255_c0_g1_i2,blat.proc3825154.chain_1581	2	STRG.12958.1,blat.proc3825154.chain_1582	2
scaffold_19	retained_intron	11485415	11485915	-	asmbl_22411	none	blat.proc3825158.chain_3249	1	STRG.22486.1,STRG.22486.2,blat.proc3825158.chain_3241,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3248	6
scaffold_28	retained_exon	5018011	5018060	+	asmbl_37565	none	STRG.29654.3	1	STRG.29654.1,STRG.29654.2,blat.proc3825178.chain_2773	3
scaffold_9	skipped_exon	17742976	17743198	+	asmbl_54643,asmbl_54645	none	STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_564	3	STRG.11863.1,blat.proc3825170.chain_563,blat.proc3825170.chain_565,blat.proc3825170.chain_567	4
scaffold_11	alternate_exon	7675052	7677799	-	asmbl_6796	none	STRG.13780.1,blat.proc3825154.chain_2374	2	STRG.13780.2,STRG.13780.3	2
scaffold_11	starts_in_intron	12901124	12901124	-	asmbl_7103	none	blat.proc3825154.chain_2729	1	STRG.14175.1,STRG.14175.2,blat.proc3825154.chain_2730,blat.proc3825154.chain_2731	4
scaffold_19	skipped_exon	12451053	12451773	-	asmbl_22488	none	STRG.22587.2	1	STRG.22587.1	1
scaffold_13	spliced_intron	8163692	8164029	-	asmbl_9942,asmbl_9943	none	STRG.16109.1,blat.proc3825156.chain_989	2	blat.proc3825156.chain_988	1
scaffold_5	alt_donor	4596061	4596062	+	asmbl_45277	none	blat.proc3825166.chain_2108	1	STRG.5907.1,STRG.5907.2,blat.proc3825166.chain_2109,blat.proc3825166.chain_2110	4
scaffold_1	ends_in_intron	10856020	10856020	+	asmbl_2030	none	STRG.711.2,blat.proc3825164.chain_851	2	STRG.711.1,STRG.711.3,blat.proc3825164.chain_850	3
scaffold_11	spliced_intron	8014909	8015006	-	asmbl_6816	none	STRG.13809.1,blat.proc3825154.chain_2392	2	blat.proc3825154.chain_2391	1
scaffold_23	alt_acceptor	7634798	7634799	-	asmbl_31040,asmbl_31041	none	STRG.26076.1,STRG.26076.2,blat.proc3825160.chain_3258,blat.proc3825160.chain_3259	4	STRG.26076.3	1
scaffold_5	spliced_intron	19029108	19029499	-	asmbl_44889,asmbl_44892	none	STRG.7022.1,blat.proc3825150.chain_3133	2	STRG.7022.3,blat.proc3825150.chain_3134	2
scaffold_7	spliced_intron	3955229	3955398	-	asmbl_50839	none	blat.proc3825152.chain_1236	1	blat.proc3825152.chain_1229	1
scaffold_1	starts_in_intron	9328966	9328966	+	asmbl_1984	none	STRG.634.3	1	STRG.634.1,STRG.634.2	2
scaffold_5	alternate_exon	131604	134622	+	asmbl_45072	none	STRG.5577.1,Trinity_GG_34179_c0_g1_i1,blat.proc3825178.chain_3547	3	STRG.5577.3	1
scaffold_12	retained_intron	101136	101235	-	asmbl_8272	none	blat.proc3825154.chain_2947	1	STRG.14421.1,blat.proc3825154.chain_2948	2
scaffold_2	alternate_exon	15294502	15295172	+	asmbl_25025	none	STRG.2479.1,blat.proc3825164.chain_2747	2	STRG.2479.2	1
scaffold_12	alt_acceptor	12454149	12454150	-	asmbl_8886	none	blat.proc3825154.chain_3675	1	STRG.15152.1,blat.proc3825154.chain_3674	2
scaffold_4	alt_donor	4827095	4827096	+	asmbl_41308	none	STRG.4374.2	1	STRG.4374.1,Trinity_GG_19746_c0_g1_i1,blat.proc3825166.chain_834	3
scaffold_566	spliced_intron	3943	4175	+	asmbl_46580	none	STRG.30397.1	1	blat.proc3825172.chain_736	1
scaffold_8	alt_donor	11761395	11761396	-	asmbl_52166	none	STRG.10380.3	1	STRG.10380.2	1
scaffold_15	skipped_exon	15184589	15185470	+	asmbl_15736,asmbl_15737,asmbl_15740	none	blat.proc3825172.chain_3525,blat.proc3825172.chain_3528,blat.proc3825172.chain_3536	3	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3519,blat.proc3825172.chain_3520,blat.proc3825172.chain_3522,blat.proc3825172.chain_3523,blat.proc3825172.chain_3524,blat.proc3825172.chain_3526,blat.proc3825172.chain_3527,blat.proc3825172.chain_3529,blat.proc3825172.chain_3530,blat.proc3825172.chain_3531,blat.proc3825172.chain_3532,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535	16
scaffold_17	ends_in_intron	12200198	12200198	+	asmbl_19276	none	STRG.20759.2,blat.proc3825174.chain_1666	2	STRG.20759.1,blat.proc3825174.chain_1662,blat.proc3825174.chain_1664	3
scaffold_3	retained_exon	16077959	16078232	-	asmbl_39474	none	STRG.3896.2,blat.proc3825150.chain_8	2	STRG.3896.4	1
scaffold_22	alt_donor	4342453	4342454	+	asmbl_29979	none	STRG.24851.2,Trinity_GG_31045_c2_g1_i1,blat.proc3825176.chain_1952	3	STRG.24851.1,Trinity_GG_31045_c2_g1_i2,blat.proc3825176.chain_1951	3
scaffold_3	ends_in_intron	10627189	10627189	+	asmbl_40291	none	blat.proc3825164.chain_3690	1	STRG.3513.1,STRG.3513.2,STRG.3513.3,STRG.3513.4,STRG.3513.5,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3682,blat.proc3825164.chain_3689	9
scaffold_22	spliced_intron	11544135	11544174	+	asmbl_30406	none	blat.proc3825176.chain_2435	1	STRG.25505.2,STRG.25505.3	2
scaffold_6	alternate_exon	5429074	5433751	+	asmbl_46945	none	STRG.7513.1,blat.proc3825166.chain_3653	2	STRG.7513.3,Trinity_GG_21394_c0_g1_i4,blat.proc3825166.chain_3654	3
scaffold_19	alternate_exon	3207470	3207629	+	asmbl_21309	none	STRG.22012.2,blat.proc3825174.chain_3042	2	STRG.22012.1,blat.proc3825174.chain_3043,blat.proc3825174.chain_3044	3
scaffold_1	alt_acceptor	14615369	14615370	+	asmbl_2406	none	STRG.1072.2	1	STRG.1072.1,blat.proc3825164.chain_1142	2
scaffold_2	alt_acceptor	15650756	15650757	-	asmbl_23645	none	STRG.2518.1,blat.proc3825148.chain_2484	2	STRG.2518.2	1
scaffold_28	alt_acceptor	303714	303715	+	asmbl_37275	none	STRG.29264.2	1	STRG.29264.1,blat.proc3825178.chain_2506,blat.proc3825178.chain_2509	3
scaffold_7	starts_in_intron	4873482	4873482	+	asmbl_49750	none	Trinity_GG_22168_c0_g1_i1,blat.proc3825168.chain_1294	2	blat.proc3825168.chain_1295	1
scaffold_20	spliced_intron	9628124	9630290	+	asmbl_26872	none	STRG.23501.4	1	STRG.23501.1,Trinity_GG_30232_c0_g1_i1,blat.proc3825176.chain_566,blat.proc3825176.chain_567	4
scaffold_21	starts_in_intron	2487000	2487000	+	asmbl_28394	none	blat.proc3825176.chain_1064	1	STRG.23875.1,STRG.23875.2,blat.proc3825176.chain_1065	3
scaffold_1	alt_acceptor	20348361	20348362	+	asmbl_2619	none	STRG.1396.1	1	STRG.1396.5	1
scaffold_26	starts_in_intron	5561971	5561971	+	asmbl_35021	none	STRG.28266.3	1	STRG.28266.1	1
scaffold_5	starts_in_intron	47675	47675	-	asmbl_43750	none	blat.proc3825150.chain_1800	1	STRG.5569.1,blat.proc3825150.chain_1799	2
scaffold_7	spliced_intron	17339037	17339069	-	asmbl_51426	none	STRG.9613.2	1	STRG.9613.1,STRG.9613.3,STRG.9613.4	3
scaffold_24	spliced_intron	10605221	10605501	+	asmbl_32578,asmbl_32579,asmbl_32580,asmbl_32583	none	STRG.27028.1,STRG.27028.2,STRG.27028.3,Trinity_GG_32236_c0_g1_i5,blat.proc3825178.chain_218,blat.proc3825178.chain_220,blat.proc3825178.chain_221	7	blat.proc3825178.chain_222	1
scaffold_3	skipped_exon	13958707	13958998	-	asmbl_39314	none	STRG.3739.1,Trinity_GG_2059_c0_g1_i1,blat.proc3825148.chain_3640	3	STRG.3739.2,Trinity_GG_2059_c0_g1_i2,blat.proc3825148.chain_3641	3
scaffold_3	starts_in_intron	13177210	13177210	+	asmbl_40437	none	blat.proc3825166.chain_163	1	STRG.3682.1,blat.proc3825166.chain_165,blat.proc3825166.chain_166	3
scaffold_1	starts_in_intron	18354504	18354504	+	asmbl_2558	none	Trinity_GG_18017_c0_g1_i1,blat.proc3825164.chain_1353	2	STRG.1289.1	1
scaffold_12	spliced_intron	7670363	7670489	+	asmbl_7785,asmbl_7787	none	STRG.14853.1,STRG.14853.2,Trinity_GG_25521_c0_g1_i3,blat.proc3825170.chain_3398,blat.proc3825170.chain_3400	5	Trinity_GG_25521_c0_g1_i4,blat.proc3825170.chain_3399,blat.proc3825170.chain_3401	3
scaffold_9	alt_donor	16628032	16628033	-	asmbl_55597,asmbl_55600	none	STRG.11802.1,STRG.11802.2,blat.proc3825154.chain_260	3	STRG.11802.3,STRG.11802.4	2
scaffold_4	retained_intron	6332069	6332164	+	asmbl_41396	none	STRG.4502.1,Trinity_GG_19811_c1_g1_i1,blat.proc3825166.chain_962	3	Trinity_GG_19811_c1_g1_i2,blat.proc3825166.chain_963	2
scaffold_20	alt_donor	5550442	5550443	-	asmbl_25767,asmbl_25768,asmbl_25770,asmbl_25771	none	STRG.23182.1,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216,blat.proc3825160.chain_217	7	STRG.23182.4,blat.proc3825160.chain_219	2
scaffold_26	spliced_intron	6721964	6722078	+	asmbl_35109	none	STRG.28365.3	1	STRG.28365.2,blat.proc3825178.chain_1438	2
scaffold_7	alt_acceptor	7615035	7615036	-	asmbl_50951,asmbl_50952	none	STRG.9014.3,STRG.9014.4,Trinity_GG_5063_c0_g1_i1,blat.proc3825152.chain_1352	4	STRG.9014.1,STRG.9014.2,Trinity_GG_5063_c0_g1_i2,blat.proc3825152.chain_1351	4
scaffold_27	alt_acceptor	1972145	1972146	-	asmbl_36797	none	STRG.28678.2	1	STRG.28678.1,blat.proc3825162.chain_1936	2
scaffold_5	spliced_intron	11990962	11991389	-	asmbl_44427,asmbl_44428,asmbl_44429,asmbl_44431,asmbl_44432,asmbl_44435	none	STRG.6453.1,STRG.6453.2,STRG.6453.4,STRG.6453.5,STRG.6453.9,blat.proc3825150.chain_2612,blat.proc3825150.chain_2614,blat.proc3825150.chain_2615	8	blat.proc3825150.chain_2616	1
scaffold_8	alt_acceptor	8269396	8269397	-	asmbl_51950	none	STRG.10106.2,blat.proc3825152.chain_2381	2	STRG.10106.1,Trinity_GG_5646_c0_g1_i1,blat.proc3825152.chain_2383,blat.proc3825152.chain_2384	4
scaffold_28	alternate_exon	5259069	5259146	-	asmbl_38282	none	STRG.29682.2	1	STRG.29682.1,blat.proc3825162.chain_2871,blat.proc3825162.chain_2872	3
scaffold_15	retained_intron	6080293	6080419	-	asmbl_14241	none	blat.proc3825156.chain_3120	1	STRG.18271.1,blat.proc3825156.chain_3121	2
scaffold_26	retained_exon	4142272	4142305	+	asmbl_34872	none	STRG.28122.2	1	STRG.28122.1,STRG.28122.3,STRG.28122.4	3
scaffold_3	retained_exon	17536305	17536373	-	asmbl_39570,asmbl_39572	none	STRG.3989.1,blat.proc3825150.chain_192,blat.proc3825150.chain_195	3	STRG.3989.2,STRG.3989.3,blat.proc3825150.chain_193,blat.proc3825150.chain_194	4
scaffold_19	ends_in_intron	10229606	10229606	+	asmbl_21634	none	blat.proc3825174.chain_3303	1	STRG.22403.1	1
scaffold_4	alternate_exon	4414044	4414536	+	asmbl_41262	none	blat.proc3825166.chain_841	1	STRG.4349.3,blat.proc3825166.chain_843	2
scaffold_15	retained_intron	7437135	7437261	-	asmbl_14297	none	STRG.18342.3,Trinity_GG_10314_c1_g1_i2,blat.proc3825156.chain_3190	3	STRG.18342.2,blat.proc3825156.chain_3191	2
scaffold_11	retained_exon	3768626	3768939	-	asmbl_6576	none	STRG.13508.3	1	STRG.13508.1,STRG.13508.4,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	4
scaffold_18	retained_exon	10189109	10189161	-	asmbl_20100	none	blat.proc3825158.chain_2524	1	STRG.21618.3	1
scaffold_1	spliced_intron	8645480	8646817	-	asmbl_468,asmbl_469,asmbl_471	none	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_584	4	Trinity_GG_322_c0_g1_i4,blat.proc3825148.chain_583,blat.proc3825148.chain_585	3
scaffold_16	alternate_exon	15218040	15221342	+	asmbl_16719,asmbl_16721	none	STRG.19882.1,STRG.19882.2,blat.proc3825174.chain_761	3	STRG.19882.3	1
scaffold_1	alternate_exon	7096313	7096409	-	asmbl_409	none	STRG.503.1,blat.proc3825148.chain_492	2	blat.proc3825148.chain_493	1
scaffold_12	alt_acceptor	16524470	16524471	-	asmbl_9130,asmbl_9131	none	STRG.15414.2,STRG.15414.3	2	STRG.15414.1,Trinity_GG_8632_c0_g1_i2,blat.proc3825156.chain_237	3
scaffold_12	alt_donor	7430569	7430570	+	asmbl_7759	none	STRG.14827.2	1	STRG.14827.1,Trinity_GG_25502_c0_g1_i1,Trinity_GG_25502_c0_g1_i2,blat.proc3825170.chain_3366,blat.proc3825170.chain_3367	5
scaffold_1	starts_in_intron	22136413	22136413	+	asmbl_2683	none	blat.proc3825164.chain_1618	1	STRG.1487.1,STRG.1487.2,STRG.1487.3	3
scaffold_22	ends_in_intron	1008843	1008843	+	asmbl_29914,asmbl_29916	none	STRG.24754.4,blat.proc3825176.chain_1859	2	STRG.24754.2,blat.proc3825176.chain_1856,blat.proc3825176.chain_1858,blat.proc3825176.chain_1861	4
scaffold_13	alternate_exon	7505395	7506361	-	asmbl_9884,asmbl_9894	none	STRG.16047.2,blat.proc3825156.chain_901,blat.proc3825156.chain_908	3	STRG.16047.1,STRG.16047.3,blat.proc3825156.chain_899,blat.proc3825156.chain_903,blat.proc3825156.chain_905	5
scaffold_24	alt_acceptor	8118647	8118648	+	asmbl_32410	none	STRG.26862.2,blat.proc3825178.chain_51	2	STRG.26862.1	1
scaffold_24	starts_in_intron	1911322	1911322	-	asmbl_32749	none	blat.proc3825160.chain_3500	1	STRG.26422.4,blat.proc3825160.chain_3498	2
scaffold_28	starts_in_intron	2811794	2811794	-	asmbl_38089,asmbl_38090	none	blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	2	STRG.29471.1,STRG.29471.2,STRG.29471.3,blat.proc3825162.chain_2598,blat.proc3825162.chain_2599	5
scaffold_13	retained_exon	1361665	1361791	-	asmbl_9401	none	STRG.15507.1,blat.proc3825156.chain_345	2	STRG.15507.2	1
scaffold_27	starts_in_intron	1609192	1609192	-	asmbl_36769	none	blat.proc3825162.chain_1917	1	blat.proc3825162.chain_1918	1
scaffold_13	alt_donor	2347962	2347963	+	asmbl_10594,asmbl_10595,asmbl_10605	none	STRG.15564.11,STRG.15564.12,STRG.15564.5	3	STRG.15564.2	1
scaffold_27	alternate_exon	5678632	5683824	+	asmbl_36356,asmbl_36359	none	STRG.28977.3,STRG.28977.4,blat.proc3825178.chain_2111,blat.proc3825178.chain_2115	4	STRG.28977.5	1
scaffold_23	starts_in_intron	4076002	4076002	+	asmbl_31477	none	Trinity_GG_31552_c0_g1_i2,blat.proc3825176.chain_2748	2	STRG.25818.1,Trinity_GG_31552_c0_g1_i1,blat.proc3825176.chain_2747	3
scaffold_15	starts_in_intron	8796201	8796201	-	asmbl_14351	none	blat.proc3825156.chain_3312	1	STRG.18424.1,STRG.18424.2,STRG.18424.3,blat.proc3825156.chain_3311,blat.proc3825156.chain_3313,blat.proc3825156.chain_3314	6
scaffold_16	alt_acceptor	8506880	8506881	-	asmbl_17245	none	STRG.19479.1	1	Trinity_GG_10906_c0_g1_i2,blat.proc3825158.chain_566	2
scaffold_21	alternate_exon	1756164	1759216	-	asmbl_27420	none	Trinity_GG_13284_c3_g1_i1,blat.proc3825160.chain_963,blat.proc3825160.chain_966	3	STRG.23823.3	1
scaffold_2	retained_intron	8055440	8055626	-	asmbl_23305	none	STRG.2094.4,blat.proc3825148.chain_2118	2	STRG.2094.1,blat.proc3825148.chain_2121	2
scaffold_22	retained_intron	4287947	4288162	-	asmbl_29236,asmbl_29244	none	STRG.24854.5,blat.proc3825160.chain_2087	2	STRG.24854.1,STRG.24854.6,blat.proc3825160.chain_2083,blat.proc3825160.chain_2084	4
scaffold_7	ends_in_intron	12703077	12703077	+	asmbl_50291	none	STRG.9382.1,blat.proc3825168.chain_1855	2	STRG.9382.2	1
scaffold_5	alt_acceptor	18178817	18178818	+	asmbl_46209	none	STRG.6956.1	1	STRG.6956.2,STRG.6956.3,Trinity_GG_21146_c1_g1_i4,blat.proc3825166.chain_3178,blat.proc3825166.chain_3180	5
scaffold_15	starts_in_intron	12749276	12749276	+	asmbl_15601	none	Trinity_GG_27597_c0_g2_i1,blat.proc3825172.chain_3381	2	STRG.18732.1,STRG.18732.2,blat.proc3825172.chain_3377,blat.proc3825172.chain_3378,blat.proc3825172.chain_3379	5
scaffold_10	retained_exon	17095062	17095121	-	asmbl_5032,asmbl_5034	none	STRG.13151.1,blat.proc3825154.chain_1699,blat.proc3825154.chain_1701	3	blat.proc3825154.chain_1700	1
scaffold_17	retained_intron	9592999	9593177	-	asmbl_18182,asmbl_18184	none	STRG.20580.3,blat.proc3825158.chain_1602	2	STRG.20580.2,Trinity_GG_11573_c0_g1_i1,blat.proc3825158.chain_1601,blat.proc3825158.chain_1603	4
scaffold_15	spliced_intron	9854011	9854120	-	asmbl_14417	none	STRG.18501.2	1	STRG.18501.1,STRG.18501.3,STRG.18501.4,Trinity_GG_10363_c1_g1_i1,blat.proc3825156.chain_3302	5
scaffold_21	ends_in_intron	2165670	2165670	-	asmbl_27435,asmbl_27437	none	STRG.23841.2,blat.proc3825160.chain_909	2	STRG.23841.1,blat.proc3825160.chain_907,blat.proc3825160.chain_908	3
scaffold_25	spliced_intron	406193	406237	-	asmbl_33978	none	STRG.27086.2	1	STRG.27086.1	1
scaffold_26	retained_intron	7900294	7900429	+	asmbl_35154,asmbl_35155	none	STRG.28410.1,blat.proc3825178.chain_1457,blat.proc3825178.chain_1458	3	STRG.28410.2,Trinity_GG_32991_c0_g1_i3,blat.proc3825178.chain_1456	3
scaffold_14	retained_intron	6291638	6291779	+	asmbl_12066	none	Trinity_GG_26712_c0_g1_i5,blat.proc3825172.chain_1842	2	STRG.17083.1,Trinity_GG_26712_c0_g1_i1,blat.proc3825172.chain_1843,blat.proc3825172.chain_1844	4
scaffold_6	alt_acceptor	13691133	13691134	+	asmbl_47530	none	STRG.8113.1	1	STRG.8113.2,blat.proc3825168.chain_550	2
scaffold_20	alt_donor	8936429	8936430	-	asmbl_26013	none	STRG.23433.3	1	STRG.23433.1,STRG.23433.2	2
scaffold_10	retained_intron	6869034	6869156	-	asmbl_4509	none	blat.proc3825154.chain_1142	1	STRG.12511.1,Trinity_GG_7015_c0_g1_i3,blat.proc3825154.chain_1139,blat.proc3825154.chain_1143,blat.proc3825154.chain_1144,blat.proc3825154.chain_1145,blat.proc3825154.chain_1146,blat.proc3825154.chain_1147	8
scaffold_13	retained_intron	14716696	14716771	+	asmbl_11470	none	blat.proc3825172.chain_1295	1	STRG.16522.1	1
scaffold_14	alternate_exon	9298412	9298580	-	asmbl_13372,asmbl_13376,asmbl_13378	none	STRG.17341.2,blat.proc3825156.chain_2168,blat.proc3825156.chain_2171,blat.proc3825156.chain_2174	4	STRG.17341.1,STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2166,blat.proc3825156.chain_2167,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2172,blat.proc3825156.chain_2176	9
scaffold_6	alt_acceptor	10143385	10143386	-	asmbl_48660	none	STRG.7849.2	1	STRG.7849.1,blat.proc3825152.chain_223	2
scaffold_6	alternate_exon	13274472	13274549	+	asmbl_47513	none	STRG.8090.5,blat.proc3825168.chain_517	2	STRG.8090.2,STRG.8090.3,STRG.8090.4,blat.proc3825168.chain_518	4
scaffold_1	alternate_exon	850795	853702	+	asmbl_1424,asmbl_1428,asmbl_1429,asmbl_1430	none	STRG.43.1,STRG.43.2,STRG.43.3,STRG.43.4	4	Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142	2
scaffold_20	spliced_intron	2613659	2614166	-	asmbl_25652	none	STRG.22989.1,blat.proc3825160.chain_38	2	STRG.22989.2	1
scaffold_5	alt_donor	5972142	5972143	+	asmbl_45385	none	blat.proc3825166.chain_2242	1	STRG.6011.2	1
scaffold_6	alt_donor	6939244	6939245	+	asmbl_47026	none	blat.proc3825168.chain_44	1	STRG.7602.1,STRG.7602.2,blat.proc3825168.chain_42	3
scaffold_8	alt_donor	8269480	8269481	-	asmbl_51950	none	STRG.10106.2,blat.proc3825152.chain_2381	2	STRG.10106.1,Trinity_GG_5646_c0_g1_i1,blat.proc3825152.chain_2383,blat.proc3825152.chain_2384	4
scaffold_4	alt_acceptor	14982182	14982183	+	asmbl_41916	none	STRG.5107.1,blat.proc3825166.chain_1524	2	STRG.5107.2	1
scaffold_23	alt_acceptor	3025105	3025106	-	asmbl_30780	none	STRG.25750.2	1	STRG.25750.1,blat.proc3825160.chain_2948	2
scaffold_21	alt_donor	7291024	7291025	-	asmbl_27794	none	STRG.24252.2,blat.proc3825160.chain_1399	2	STRG.24252.1,STRG.24252.3,blat.proc3825160.chain_1396,blat.proc3825160.chain_1398	4
scaffold_10	alt_donor	10640545	10640546	-	asmbl_4753	none	STRG.12763.2	1	STRG.12763.1	1
scaffold_9	skipped_exon	2795829	2798112	+	asmbl_53860,asmbl_53863	none	STRG.10918.2,STRG.10918.5,Trinity_GG_23372_c0_g1_i5,Trinity_GG_23372_c0_g1_i7,blat.proc3825168.chain_3429,blat.proc3825168.chain_3431	6	STRG.10918.1,STRG.10918.4,Trinity_GG_23372_c0_g1_i8,blat.proc3825168.chain_3433	4
scaffold_1	retained_intron	14216887	14216983	+	asmbl_2353,asmbl_2355	none	STRG.1012.1,blat.proc3825164.chain_1133,blat.proc3825164.chain_1134	3	blat.proc3825164.chain_1132	1
scaffold_137	retained_intron	8309	8646	-	asmbl_11733	none	STRG.30184.1,Trinity_GG_16938_c0_g1_i1,blat.proc3825162.chain_3334	3	STRG.30184.2	1
scaffold_5	spliced_intron	1249035	1249146	-	asmbl_43846,asmbl_43847	none	STRG.5688.1,blat.proc3825150.chain_1932,blat.proc3825150.chain_1933	3	Trinity_GG_3222_c0_g1_i3,blat.proc3825150.chain_1931	2
scaffold_3	alternate_exon	7714352	7714552	-	asmbl_38981,asmbl_38982,asmbl_38983	none	blat.proc3825148.chain_3201,blat.proc3825148.chain_3202,blat.proc3825148.chain_3203	3	STRG.3368.1,Trinity_GG_1797_c2_g1_i1	2
scaffold_13	retained_intron	2507878	2508092	+	asmbl_10622	none	Trinity_GG_25851_c0_g1_i1,blat.proc3825172.chain_287	2	STRG.15559.1,STRG.15559.2,STRG.15559.3,Trinity_GG_25851_c0_g1_i2,Trinity_GG_25851_c0_g1_i4,Trinity_GG_25851_c0_g1_i5,blat.proc3825172.chain_284,blat.proc3825172.chain_285,blat.proc3825172.chain_286	9
scaffold_8	spliced_intron	8733303	8733398	+	asmbl_53029,asmbl_53030	none	STRG.10134.3,STRG.10134.4	2	STRG.10134.1,Trinity_GG_22941_c0_g1_i2,Trinity_GG_22941_c1_g1_i1,blat.proc3825168.chain_2680,blat.proc3825168.chain_2681	5
scaffold_5	retained_intron	18758399	18758711	-	asmbl_44873	none	Trinity_GG_3898_c0_g1_i3,blat.proc3825150.chain_3108	2	STRG.7008.1,blat.proc3825150.chain_3109	2
scaffold_9	alternate_exon	5080375	5080489	+	asmbl_53992	none	STRG.11088.4	1	STRG.11088.1,STRG.11088.2,STRG.11088.3	3
scaffold_8	ends_in_intron	9478688	9478688	-	asmbl_52046	none	blat.proc3825152.chain_2476	1	STRG.10206.1,blat.proc3825152.chain_2472,blat.proc3825152.chain_2473,blat.proc3825152.chain_2477	4
scaffold_13	alternate_exon	405973	407071	-	asmbl_9343,asmbl_9347,asmbl_9349	none	Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i5,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_364	6	STRG.15444.2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360	7
scaffold_10	retained_intron	8896299	8896584	-	asmbl_4627,asmbl_4629	none	blat.proc3825154.chain_1267,blat.proc3825154.chain_1271	2	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	11
scaffold_7	alt_acceptor	6878393	6878394	+	asmbl_49873	none	STRG.8947.1	1	STRG.8947.2	1
scaffold_4	alt_acceptor	9978169	9978170	+	asmbl_41631	none	STRG.4757.1	1	STRG.4757.2	1
scaffold_5	alt_donor	14569226	14569227	-	asmbl_44601	none	STRG.6658.2	1	STRG.6658.1,blat.proc3825150.chain_2785	2
scaffold_9	spliced_intron	11551049	11551499	-	asmbl_55297	none	STRG.11473.1,blat.proc3825152.chain_3707	2	STRG.11473.2,STRG.11473.3,blat.proc3825152.chain_3708,blat.proc3825152.chain_3710	4
scaffold_23	alt_donor	8950257	8950258	-	asmbl_31088	none	STRG.26155.1,blat.proc3825160.chain_3227	2	STRG.26155.2,blat.proc3825160.chain_3226	2
scaffold_13	starts_in_intron	8348444	8348444	+	asmbl_11124	none	Trinity_GG_26182_c0_g1_i3,blat.proc3825172.chain_912	2	STRG.16126.1,blat.proc3825172.chain_911	2
scaffold_15	starts_in_intron	11407529	11407529	-	asmbl_14500	none	blat.proc3825156.chain_3450	1	STRG.18616.1,blat.proc3825156.chain_3449,blat.proc3825156.chain_3451	3
scaffold_25	spliced_intron	8707410	8707661	+	asmbl_33751,asmbl_33756,asmbl_33759	none	STRG.27702.2,STRG.27702.3,blat.proc3825178.chain_762,blat.proc3825178.chain_766	4	blat.proc3825178.chain_767	1
scaffold_13	starts_in_intron	7655198	7655198	+	asmbl_11061,asmbl_11066	none	Trinity_GG_26131_c0_g1_i3,blat.proc3825172.chain_823,blat.proc3825172.chain_825	3	STRG.16054.1,STRG.16054.2,blat.proc3825172.chain_821,blat.proc3825172.chain_824	4
scaffold_5	spliced_intron	11991739	11993287	-	asmbl_44428,asmbl_44434	none	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3	blat.proc3825150.chain_2615	1
scaffold_9	alternate_exon	9614424	9614533	-	asmbl_55215	none	STRG.11330.1,blat.proc3825152.chain_3607	2	STRG.11330.2	1
scaffold_13	skipped_exon	2660618	2662993	-	asmbl_9473	none	STRG.15572.1,blat.proc3825156.chain_386	2	blat.proc3825156.chain_385	1
scaffold_27	alternate_exon	6781632	6782128	-	asmbl_37080	none	STRG.29050.1,blat.proc3825162.chain_2279	2	blat.proc3825162.chain_2277	1
scaffold_16	starts_in_intron	4042758	4042758	-	asmbl_17037	none	blat.proc3825158.chain_348	1	STRG.19222.2,blat.proc3825158.chain_347	2
scaffold_1	retained_exon	13129203	13129304	-	asmbl_796,asmbl_798	none	STRG.955.1,blat.proc3825148.chain_913,blat.proc3825148.chain_914	3	blat.proc3825148.chain_915	1
scaffold_15	alternate_exon	2782605	2782814	-	asmbl_14047	none	blat.proc3825156.chain_2898	1	STRG.18069.1	1
scaffold_21	spliced_intron	1657024	1657137	+	asmbl_28346,asmbl_28347,asmbl_28348,asmbl_28350,asmbl_28351	none	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,Trinity_GG_30526_c0_g1_i4,Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058,blat.proc3825176.chain_1059,blat.proc3825176.chain_1060	9	Trinity_GG_30526_c0_g1_i11,blat.proc3825176.chain_1055,blat.proc3825176.chain_1061	3
scaffold_11	retained_intron	1981821	1981961	-	asmbl_6460	none	STRG.13359.1,blat.proc3825154.chain_1934	2	STRG.13359.2,STRG.13359.3,blat.proc3825154.chain_1935	3
scaffold_12	alternate_exon	11365129	11365232	-	asmbl_8807	none	STRG.15079.2,Trinity_GG_8421_c0_g1_i1,blat.proc3825154.chain_3591	3	STRG.15079.1	1
scaffold_10	alternate_exon	8903653	8903910	-	asmbl_4638	none	STRG.12634.2,blat.proc3825154.chain_1248	2	STRG.12634.1,blat.proc3825154.chain_1246	2
scaffold_11	retained_intron	17084164	17084320	-	asmbl_7246,asmbl_7247,asmbl_7249,asmbl_7250,asmbl_7253	none	STRG.14373.1,STRG.14373.4,Trinity_GG_8018_c0_g1_i2,blat.proc3825154.chain_2883,blat.proc3825154.chain_2884,blat.proc3825154.chain_2885,blat.proc3825154.chain_2886	7	STRG.14373.2,STRG.14373.3,blat.proc3825154.chain_2882	3
scaffold_9	starts_in_intron	1993516	1993516	-	asmbl_54858	none	STRG.10874.2,Trinity_GG_6042_c0_g1_i3,blat.proc3825152.chain_3128	3	STRG.10874.3	1
scaffold_15	spliced_intron	2730568	2730589	-	asmbl_14038	none	blat.proc3825156.chain_2882,blat.proc3825156.chain_2883	2	STRG.18061.1,Trinity_GG_10156_c0_g1_i1,Trinity_GG_10156_c0_g1_i2	3
scaffold_8	alt_acceptor	10863199	10863200	-	asmbl_52121,asmbl_52122	none	STRG.10312.1,STRG.10312.3,blat.proc3825152.chain_2589	3	STRG.10312.2	1
scaffold_14	retained_intron	7480485	7480705	-	asmbl_13209,asmbl_13210	none	STRG.17192.1,STRG.17192.2,Trinity_GG_9570_c1_g1_i1,blat.proc3825156.chain_1871,blat.proc3825156.chain_1872	5	STRG.17192.3	1
scaffold_12	alt_acceptor	16182445	16182446	-	asmbl_9103	none	STRG.15375.2,Trinity_GG_8604_c0_g1_i2,blat.proc3825156.chain_186	3	STRG.15375.1,STRG.15375.3,Trinity_GG_8604_c0_g1_i1,blat.proc3825156.chain_185	4
scaffold_25	alt_donor	7905494	7905495	-	asmbl_34414	none	blat.proc3825162.chain_919	1	blat.proc3825162.chain_920	1
scaffold_15	starts_in_intron	6961396	6961396	+	asmbl_15267	none	Trinity_GG_27305_c0_g1_i2,blat.proc3825172.chain_2907	2	STRG.18305.1,blat.proc3825172.chain_2906	2
scaffold_8	starts_in_intron	9476973	9476973	-	asmbl_52044	none	Trinity_GG_5695_c0_g1_i6,blat.proc3825152.chain_2475	2	STRG.10206.1,blat.proc3825152.chain_2472,blat.proc3825152.chain_2473,blat.proc3825152.chain_2477	4
scaffold_22	spliced_intron	1626257	1626515	-	asmbl_29145	none	STRG.24752.2,blat.proc3825160.chain_1950	2	STRG.24752.1,blat.proc3825160.chain_1949	2
scaffold_25	spliced_intron	7878592	7878745	+	asmbl_33686	none	STRG.27613.2	1	STRG.27613.1	1
scaffold_6	skipped_exon	3041910	3042596	-	asmbl_48218	none	STRG.7310.2,blat.proc3825150.chain_3455	2	STRG.7310.3,blat.proc3825150.chain_3456	2
scaffold_8	spliced_intron	18442849	18443312	-	asmbl_52542	none	STRG.10748.1,blat.proc3825152.chain_3023	2	blat.proc3825152.chain_3024	1
scaffold_8	starts_in_intron	16504493	16504493	-	asmbl_52402,asmbl_52403,asmbl_52404,asmbl_52422	none	STRG.10629.2,STRG.10629.3,Trinity_GG_5934_c0_g1_i6,blat.proc3825152.chain_2928,blat.proc3825152.chain_2930,blat.proc3825152.chain_2938	6	STRG.10629.1,STRG.10629.4,STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i12,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2935,blat.proc3825152.chain_2936,blat.proc3825152.chain_2937,blat.proc3825152.chain_2939,blat.proc3825152.chain_2941	16
scaffold_3	spliced_intron	17364766	17365193	-	asmbl_39549,asmbl_39557	none	STRG.3971.2,blat.proc3825150.chain_184,blat.proc3825150.chain_185	3	blat.proc3825150.chain_175,blat.proc3825150.chain_183	2
scaffold_26	alt_donor	3519197	3519198	+	asmbl_34782	none	STRG.28028.1,blat.proc3825178.chain_1066	2	STRG.28028.2,blat.proc3825178.chain_1068	2
scaffold_1	alt_acceptor	6126767	6126768	-	asmbl_320	none	blat.proc3825148.chain_391	1	STRG.415.1,STRG.415.2,blat.proc3825148.chain_392	3
scaffold_28	starts_in_intron	5638636	5638636	-	asmbl_38312	none	blat.proc3825162.chain_2856	1	STRG.29706.1,STRG.29706.2,STRG.29706.4,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854,blat.proc3825162.chain_2855,blat.proc3825162.chain_2858	7
scaffold_5	retained_intron	14125028	14125150	-	asmbl_44590	none	blat.proc3825166.chain_2774	1	STRG.6623.1	1
scaffold_9	spliced_intron	17610765	17610884	-	asmbl_55660,asmbl_55662	none	STRG.11851.1,blat.proc3825154.chain_294,blat.proc3825154.chain_295,blat.proc3825154.chain_296	4	STRG.11851.2,STRG.11851.3,STRG.11851.4,Trinity_GG_6530_c0_g2_i1,blat.proc3825154.chain_298	5
scaffold_6	spliced_intron	9012696	9012818	+	asmbl_47193	none	STRG.7780.1,blat.proc3825168.chain_238	2	STRG.7780.2,blat.proc3825168.chain_237	2
scaffold_16	alt_acceptor	5357608	5357609	-	asmbl_17087	none	STRG.19286.2	1	STRG.19286.1	1
scaffold_9	alt_donor	5138118	5138119	-	asmbl_54990	none	STRG.11093.1,blat.proc3825152.chain_3270	2	STRG.11093.2,blat.proc3825152.chain_3271	2
scaffold_4	spliced_intron	12691444	12691546	-	asmbl_42951,asmbl_42952	none	STRG.4910.1,STRG.4910.3,blat.proc3825150.chain_1018,blat.proc3825150.chain_1019	4	STRG.4910.4,blat.proc3825150.chain_1021	2
scaffold_26	alternate_exon	6706127	6706255	-	asmbl_35698,asmbl_35701,asmbl_35702	none	STRG.28371.3,blat.proc3825162.chain_1602,blat.proc3825162.chain_1603	3	STRG.28371.1,STRG.28371.2,blat.proc3825162.chain_1604	3
scaffold_11	alternate_exon	3770069	3784007	-	asmbl_6574,asmbl_6575	none	STRG.13508.1,STRG.13508.4,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	4	STRG.13508.2	1
scaffold_16	ends_in_intron	7518178	7518178	+	asmbl_16343,asmbl_16344	none	STRG.19405.1,Trinity_GG_27948_c3_g1_i1,Trinity_GG_27948_c3_g1_i2,blat.proc3825174.chain_341,blat.proc3825174.chain_342	5	STRG.19405.3	1
scaffold_28	alt_donor	1705880	1705881	-	asmbl_38011	none	STRG.29367.2	1	STRG.29367.1,blat.proc3825162.chain_2543	2
scaffold_3	spliced_intron	14433082	14433258	-	asmbl_39371,asmbl_39374	none	STRG.3785.1,Trinity_GG_2047_c0_g1_i6,Trinity_GG_2047_c0_g1_i7,blat.proc3825148.chain_3610,blat.proc3825148.chain_3611	5	STRG.3785.2,Trinity_GG_2047_c0_g1_i2,blat.proc3825148.chain_3609	3
scaffold_21	ends_in_intron	535616	535616	+	asmbl_28277	none	Trinity_GG_30470_c1_g1_i1,blat.proc3825176.chain_959	2	STRG.23747.1,Trinity_GG_30470_c0_g1_i1,blat.proc3825176.chain_958	3
scaffold_12	ends_in_intron	15263304	15263304	-	asmbl_9066	none	Trinity_GG_8603_c0_g1_i2,blat.proc3825156.chain_181	2	STRG.15338.1,STRG.15338.2,Trinity_GG_8603_c0_g1_i1,blat.proc3825156.chain_180	4
scaffold_11	retained_intron	8330044	8330165	-	asmbl_6857	none	STRG.13848.1,Trinity_GG_7746_c0_g1_i2,blat.proc3825154.chain_2401	3	STRG.13848.2,Trinity_GG_7746_c0_g1_i1,blat.proc3825154.chain_2402	3
scaffold_13	alt_donor	15672407	15672408	+	asmbl_11526,asmbl_11530	none	STRG.16612.3,STRG.16612.5	2	STRG.16612.1,STRG.16612.2,STRG.16612.6	3
scaffold_26	starts_in_intron	1890385	1890385	-	asmbl_35419	none	blat.proc3825162.chain_1240	1	STRG.27936.1,blat.proc3825162.chain_1241,blat.proc3825162.chain_1242	3
scaffold_19	alternate_exon	8816569	8816594	+	asmbl_21560	none	STRG.22335.4	1	STRG.22335.1,STRG.22335.2,blat.proc3825174.chain_3343	3
scaffold_22	alternate_exon	10701642	10701835	+	asmbl_30364	none	STRG.25410.1,blat.proc3825176.chain_2440	2	STRG.25410.2,Trinity_GG_31356_c0_g1_i1,blat.proc3825176.chain_2439	3
scaffold_17	spliced_intron	13196844	13197082	-	asmbl_18362	none	STRG.20817.3,blat.proc3825158.chain_1829	2	blat.proc3825158.chain_1826	1
scaffold_6	spliced_intron	7174460	7174541	+	asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47057,asmbl_47058,asmbl_47059	none	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84,blat.proc3825168.chain_85	7	blat.proc3825168.chain_82	1
scaffold_16	starts_in_intron	8042502	8042502	+	asmbl_16374	none	blat.proc3825174.chain_275	1	STRG.19448.1,STRG.19448.2,Trinity_GG_27912_c0_g1_i2,Trinity_GG_27912_c0_g1_i5,blat.proc3825174.chain_276,blat.proc3825174.chain_277,blat.proc3825174.chain_278	7
scaffold_5	retained_exon	5738076	5738209	+	asmbl_45364	none	STRG.5992.5	1	STRG.5992.3,blat.proc3825166.chain_2133	2
scaffold_18	retained_intron	11328837	11329142	+	asmbl_20939	none	blat.proc3825174.chain_2686	1	STRG.21676.1,STRG.21676.2,blat.proc3825174.chain_2683,blat.proc3825174.chain_2691	4
scaffold_8	alternate_exon	9868129	9868366	+	asmbl_53124	none	blat.proc3825168.chain_2816	1	blat.proc3825168.chain_2815	1
scaffold_12	alt_donor	12015109	12015110	+	asmbl_7969	none	STRG.15117.2,Trinity_GG_25593_c0_g1_i3,blat.proc3825170.chain_3542	3	STRG.15117.1,Trinity_GG_25593_c0_g1_i5,blat.proc3825170.chain_3543	3
scaffold_8	retained_intron	4960014	4960245	-	asmbl_51818	none	STRG.9966.2,Trinity_GG_5545_c0_g1_i1,blat.proc3825152.chain_2196	3	STRG.9966.1,blat.proc3825152.chain_2198,blat.proc3825152.chain_2199,blat.proc3825152.chain_2200	4
scaffold_13	alt_donor	13559189	13559190	+	asmbl_11392	none	STRG.16409.1	1	STRG.16409.2	1
scaffold_21	alt_acceptor	6921891	6921892	-	asmbl_27751	none	STRG.24221.2	1	STRG.24221.1,Trinity_GG_13500_c0_g1_i2,blat.proc3825160.chain_1341,blat.proc3825160.chain_1342	4
scaffold_7	alt_acceptor	7612307	7612308	-	asmbl_50951,asmbl_50952,asmbl_50953	none	STRG.9014.2,STRG.9014.3,STRG.9014.4,blat.proc3825152.chain_1361	4	STRG.9014.1,blat.proc3825152.chain_1363	2
scaffold_3	ends_in_intron	14763758	14763758	-	asmbl_39419,asmbl_39420	none	Trinity_GG_2082_c0_g1_i1,Trinity_GG_2082_c0_g1_i2,blat.proc3825148.chain_3684,blat.proc3825148.chain_3686	4	STRG.3820.2,STRG.3820.3	2
scaffold_25	alternate_exon	6525506	6525744	-	asmbl_34364	none	blat.proc3825162.chain_927	1	blat.proc3825162.chain_926	1
scaffold_17	alt_acceptor	3998704	3998705	+	asmbl_18756,asmbl_18760	none	STRG.20160.2,blat.proc3825174.chain_1035	2	blat.proc3825174.chain_1031	1
scaffold_24	spliced_intron	3700697	3701118	+	asmbl_32157	none	STRG.26557.1,blat.proc3825176.chain_3490,blat.proc3825176.chain_3491	3	blat.proc3825176.chain_3489,blat.proc3825176.chain_3492	2
scaffold_1	alternate_exon	13717106	13718914	-	asmbl_839	none	STRG.986.1,Trinity_GG_446_c0_g1_i1,Trinity_GG_524_c2_g1_i1,blat.proc3825148.chain_848,blat.proc3825148.chain_990,blat.proc3825148.chain_992	6	STRG.986.2,blat.proc3825148.chain_991	2
scaffold_5	starts_in_intron	13803402	13803402	-	asmbl_44562	none	blat.proc3825150.chain_2816	1	STRG.6602.3,blat.proc3825150.chain_2815	2
scaffold_11	retained_intron	7819465	7819560	+	asmbl_5682	none	STRG.13786.1,Trinity_GG_24901_c0_g1_i2,blat.proc3825170.chain_2318	3	STRG.13786.2,Trinity_GG_24901_c0_g1_i1,blat.proc3825170.chain_2319	3
scaffold_11	starts_in_intron	335785	335785	+	asmbl_5288	none	Trinity_GG_24611_c0_g1_i1,blat.proc3825170.chain_1832	2	STRG.13269.1,STRG.13269.2,STRG.13269.3,blat.proc3825170.chain_1831,blat.proc3825170.chain_1833,blat.proc3825170.chain_1834	6
scaffold_402	ends_in_intron	4040	4040	-	asmbl_43673	none	STRG.30314.2,blat.proc3825162.chain_3437	2	STRG.30314.1	1
scaffold_28	retained_intron	5238035	5238122	-	asmbl_38267,asmbl_38272	none	STRG.29676.1,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785	3	STRG.29676.2,Trinity_GG_16598_c0_g1_i6,blat.proc3825162.chain_2781,blat.proc3825162.chain_2787,blat.proc3825162.chain_2788	5
scaffold_18	ends_in_intron	7685206	7685206	+	asmbl_20779	none	blat.proc3825174.chain_2521	1	STRG.21474.1,STRG.21474.2,STRG.21474.3,STRG.21474.4,Trinity_GG_29179_c0_g1_i14,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	12
scaffold_21	spliced_intron	3175043	3175199	+	asmbl_28456,asmbl_28457,asmbl_28458,asmbl_28460,asmbl_28464,asmbl_28466,asmbl_28467,asmbl_28468,asmbl_28469,asmbl_28470,asmbl_28471,asmbl_28472,asmbl_28473	none	STRG.23959.1,STRG.23959.2,STRG.23959.3,STRG.23959.4,STRG.23959.5,STRG.23959.7,blat.proc3825176.chain_1132,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142,blat.proc3825176.chain_1143	14	blat.proc3825176.chain_1140	1
scaffold_13	spliced_intron	517905	518333	+	asmbl_10488,asmbl_10490	none	STRG.15449.4,blat.proc3825172.chain_183	2	STRG.15449.1,blat.proc3825172.chain_188	2
scaffold_3	spliced_intron	1089470	1089642	+	asmbl_39830,asmbl_39831	none	STRG.2937.2,STRG.2937.3	2	STRG.2937.1,blat.proc3825164.chain_3168	2
scaffold_15	alt_acceptor	15410181	15410182	+	asmbl_15770,asmbl_15772,asmbl_15773	none	STRG.18930.10,STRG.18930.2,STRG.18930.7,blat.proc3825172.chain_3590	4	STRG.18930.1,STRG.18930.3,STRG.18930.5,STRG.18930.6,STRG.18930.9,blat.proc3825172.chain_3586,blat.proc3825172.chain_3587,blat.proc3825172.chain_3588,blat.proc3825172.chain_3589	9
scaffold_9	ends_in_intron	12826104	12826104	+	asmbl_54470	none	blat.proc3825170.chain_459	1	STRG.11603.2,blat.proc3825170.chain_458	2
scaffold_1	alt_acceptor	7697524	7697525	+	asmbl_1912	none	STRG.535.2,Trinity_GG_17656_c0_g1_i1,blat.proc3825164.chain_686	3	STRG.535.1,Trinity_GG_17656_c0_g1_i2,blat.proc3825164.chain_685	3
scaffold_7	retained_intron	12053972	12054062	+	asmbl_50207	none	blat.proc3825168.chain_1828	1	STRG.9309.1,blat.proc3825168.chain_1831	2
scaffold_21	retained_intron	10097905	10097938	+	asmbl_28857,asmbl_28858	none	STRG.24472.2,STRG.24472.3	2	STRG.24472.1	1
scaffold_15	alternate_exon	12621152	12622144	+	asmbl_15587	none	STRG.18717.2,Trinity_GG_27593_c1_g1_i2,Trinity_GG_27593_c1_g1_i5,blat.proc3825172.chain_3369,blat.proc3825172.chain_3370	5	STRG.18717.1,Trinity_GG_27593_c0_g1_i1,blat.proc3825172.chain_3366	3
scaffold_13	alt_acceptor	2334861	2334862	+	asmbl_10598,asmbl_10604,asmbl_10611	none	STRG.15564.2,STRG.15564.4,STRG.15564.6,blat.proc3825172.chain_222	4	STRG.15564.3,STRG.15564.5,blat.proc3825172.chain_224,blat.proc3825172.chain_230	4
scaffold_1	retained_intron	11568439	11568517	-	asmbl_636	none	blat.proc3825148.chain_744	1	STRG.767.1,STRG.767.2,blat.proc3825148.chain_743,blat.proc3825148.chain_745,blat.proc3825148.chain_746,blat.proc3825148.chain_747	6
scaffold_26	starts_in_intron	4816778	4816778	-	asmbl_35596	none	STRG.28201.2	1	STRG.28201.1,blat.proc3825162.chain_1461	2
scaffold_13	retained_exon	16437298	16437381	+	asmbl_11582	none	blat.proc3825172.chain_1427	1	STRG.16696.1,STRG.16696.2,Trinity_GG_26477_c0_g1_i5,blat.proc3825172.chain_1426	4
scaffold_12	spliced_intron	12285468	12285624	-	asmbl_8851	none	STRG.15127.1,blat.proc3825154.chain_3636,blat.proc3825154.chain_3637	3	STRG.15127.2	1
scaffold_4	alternate_exon	10463504	10463558	+	asmbl_41663	none	STRG.4791.2,blat.proc3825166.chain_1232	2	STRG.4791.1,blat.proc3825166.chain_1233	2
scaffold_18	spliced_intron	8862547	8863588	-	asmbl_20027,asmbl_20029,asmbl_20030	none	STRG.21549.2,blat.proc3825158.chain_2355,blat.proc3825158.chain_2358,blat.proc3825158.chain_2359	4	STRG.21549.1,Trinity_GG_11998_c0_g1_i1,blat.proc3825158.chain_2353,blat.proc3825158.chain_2354,blat.proc3825158.chain_2361,blat.proc3825158.chain_2362	6
scaffold_24	alt_acceptor	2186897	2186898	+	asmbl_32085	none	STRG.26445.1	1	blat.proc3825176.chain_3382	1
scaffold_4	alt_acceptor	3884533	3884534	-	asmbl_42460,asmbl_42461	none	STRG.4296.2,STRG.4296.3,blat.proc3825150.chain_530	3	STRG.4296.1,STRG.4296.4,blat.proc3825150.chain_531	3
scaffold_12	alt_donor	14104457	14104458	-	asmbl_8980,asmbl_8985	none	Trinity_GG_8557_c0_g1_i6,blat.proc3825156.chain_95,blat.proc3825156.chain_96	3	Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_88,blat.proc3825156.chain_97	3
scaffold_1	alt_donor	19006450	19006451	+	asmbl_2575	none	STRG.1324.1	1	STRG.1324.3	1
scaffold_15	starts_in_intron	2073598	2073598	-	asmbl_13986	none	Trinity_GG_10107_c0_g1_i4,blat.proc3825156.chain_2792	2	STRG.18002.1,STRG.18002.2,STRG.18002.3,blat.proc3825156.chain_2794	4
scaffold_3	alt_donor	3323603	3323604	-	asmbl_38772,asmbl_38776	none	STRG.3080.1,STRG.3080.2,blat.proc3825148.chain_2945	3	blat.proc3825148.chain_2946	1
scaffold_19	spliced_intron	6213363	6213529	+	asmbl_21399	none	STRG.22153.2,blat.proc3825174.chain_3107	2	blat.proc3825174.chain_3105	1
scaffold_21	alternate_exon	5141937	5143631	-	asmbl_27613	none	blat.proc3825160.chain_1234	1	blat.proc3825160.chain_1236	1
scaffold_23	alt_donor	9942029	9942030	+	asmbl_31812	none	STRG.26193.3	1	STRG.26193.2,blat.proc3825176.chain_3168	2
scaffold_2	starts_in_intron	5708815	5708815	-	asmbl_23158	none	Trinity_GG_1048_c0_g1_i2,blat.proc3825148.chain_1859	2	STRG.1958.1,blat.proc3825148.chain_1858	2
scaffold_2	alt_acceptor	3805857	3805858	-	asmbl_23001	none	STRG.1819.1,blat.proc3825148.chain_1752	2	STRG.1819.2	1
scaffold_13	ends_in_intron	2340840	2340840	+	asmbl_10596,asmbl_10599,asmbl_10607	none	STRG.15564.3,STRG.15564.8,STRG.15564.9	3	STRG.15564.2,STRG.15564.4,STRG.15564.5	3
scaffold_2	retained_exon	6900682	6900759	+	asmbl_24510,asmbl_24511,asmbl_24513,asmbl_24514,asmbl_24516	none	STRG.2036.1,STRG.2036.2,STRG.2036.3,blat.proc3825164.chain_2155,blat.proc3825164.chain_2158,blat.proc3825164.chain_2160	6	STRG.2036.4,Trinity_GG_18453_c0_g1_i8,blat.proc3825164.chain_2156,blat.proc3825164.chain_2159	4
scaffold_16	retained_intron	116383	116577	+	asmbl_15995	none	Trinity_GG_27734_c1_g1_i1,blat.proc3825172.chain_3668	2	STRG.19000.1,Trinity_GG_27734_c0_g1_i2,blat.proc3825172.chain_3666,blat.proc3825172.chain_3667	4
scaffold_18	retained_intron	7686295	7686459	+	asmbl_20774,asmbl_20775,asmbl_20776	none	STRG.21474.5,Trinity_GG_29179_c0_g1_i14,blat.proc3825174.chain_2511,blat.proc3825174.chain_2512,blat.proc3825174.chain_2516	5	STRG.21474.1,STRG.21474.2,STRG.21474.3,STRG.21474.4,Trinity_GG_29179_c0_g1_i11,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2510,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	11
scaffold_6	alt_donor	15945018	15945019	+	asmbl_47682	none	STRG.8324.4	1	STRG.8324.2	1
scaffold_7	retained_intron	9311727	9311873	+	asmbl_50077	none	Trinity_GG_22395_c0_g1_i1,blat.proc3825168.chain_1672	2	STRG.9144.1,Trinity_GG_22395_c0_g1_i2,Trinity_GG_22395_c0_g1_i3,Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669,blat.proc3825168.chain_1670,blat.proc3825168.chain_1671	7
scaffold_15	alt_donor	1963690	1963691	+	asmbl_15042	none	STRG.17992.3	1	blat.proc3825172.chain_2697	1
scaffold_7	alt_acceptor	2490440	2490441	+	asmbl_49647,asmbl_49648,asmbl_49649	none	Trinity_GG_22100_c0_g1_i3,blat.proc3825168.chain_1192,blat.proc3825168.chain_1193,blat.proc3825168.chain_1194,blat.proc3825168.chain_1195	5	blat.proc3825168.chain_1196	1
scaffold_19	alternate_exon	2780296	2780543	+	asmbl_21276,asmbl_21277,asmbl_21278	none	STRG.21962.1,STRG.21962.2,STRG.21962.3,Trinity_GG_29459_c1_g1_i1,blat.proc3825174.chain_3001	5	STRG.21962.4,STRG.21962.5	2
scaffold_12	ends_in_intron	12802708	12802708	+	asmbl_8020	none	STRG.15177.2	1	STRG.15177.1,blat.proc3825170.chain_3619,blat.proc3825170.chain_3620,blat.proc3825170.chain_3621	4
scaffold_4	alt_donor	17419128	17419129	-	asmbl_43261	none	STRG.5328.2,Trinity_GG_2975_c0_g1_i1,blat.proc3825150.chain_1501	3	STRG.5328.1,STRG.5328.4	2
scaffold_17	spliced_intron	10037011	10037314	-	asmbl_18224	none	Trinity_GG_11583_c0_g1_i1,blat.proc3825158.chain_1618	2	Trinity_GG_11583_c0_g1_i2,blat.proc3825158.chain_1621	2
scaffold_13	alt_donor	16138003	16138004	+	asmbl_11556	none	STRG.16653.2	1	STRG.16653.1,Trinity_GG_26492_c0_g1_i1	2
scaffold_19	alt_acceptor	2247796	2247797	-	asmbl_22053	none	blat.proc3825158.chain_2795	1	blat.proc3825158.chain_2796	1
scaffold_28	retained_intron	3037644	3038209	-	asmbl_38127	none	STRG.29510.1,Trinity_GG_16557_c0_g1_i2,blat.proc3825162.chain_2693	3	blat.proc3825162.chain_2692	1
scaffold_23	starts_in_intron	2310021	2310021	+	asmbl_31389	none	blat.proc3825176.chain_2661	1	STRG.25708.1,blat.proc3825176.chain_2660,blat.proc3825176.chain_2663	3
scaffold_25	spliced_intron	6038950	6039040	-	asmbl_34310,asmbl_34311	none	STRG.27484.1,STRG.27484.2,blat.proc3825162.chain_864,blat.proc3825162.chain_865	4	blat.proc3825162.chain_866	1
scaffold_23	spliced_intron	4449754	4449915	-	asmbl_30865	none	STRG.25862.4,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3004	3	STRG.25862.2,Trinity_GG_14447_c0_g1_i4,blat.proc3825160.chain_3003	3
scaffold_14	skipped_exon	868522	868972	+	asmbl_11775,asmbl_11776,asmbl_11777,asmbl_11778	none	STRG.16759.1,STRG.16759.2,STRG.16759.3,blat.proc3825172.chain_1525	4	Trinity_GG_26529_c0_g1_i2,blat.proc3825172.chain_1524	2
scaffold_1	starts_in_intron	14427416	14427416	-	asmbl_924,asmbl_925	none	blat.proc3825148.chain_1047,blat.proc3825148.chain_1048	2	STRG.1045.2,STRG.1045.3,STRG.1045.4,blat.proc3825148.chain_1046,blat.proc3825148.chain_1049,blat.proc3825148.chain_1050	6
scaffold_12	alt_donor	16413004	16413005	+	asmbl_8180	none	STRG.15397.2,blat.proc3825172.chain_35	2	STRG.15397.1,blat.proc3825172.chain_36	2
scaffold_26	retained_exon	5649357	5649445	-	asmbl_35608,asmbl_35609,asmbl_35611,asmbl_35612,asmbl_35613,asmbl_35614	none	STRG.28272.1,STRG.28272.2,blat.proc3825162.chain_1525,blat.proc3825162.chain_1526,blat.proc3825162.chain_1527,blat.proc3825162.chain_1528,blat.proc3825162.chain_1529,blat.proc3825162.chain_1530,blat.proc3825162.chain_1531,blat.proc3825162.chain_1532	10	STRG.28272.3	1
scaffold_4	alt_donor	3237418	3237419	-	asmbl_42426	none	STRG.4249.1	1	STRG.4249.3,STRG.4249.4	2
scaffold_3	alt_acceptor	18141547	18141548	-	asmbl_39592,asmbl_39593,asmbl_39594	none	STRG.4029.2,STRG.4029.3,blat.proc3825150.chain_207,blat.proc3825150.chain_208	4	STRG.4029.1	1
scaffold_18	alt_acceptor	4690073	4690074	+	asmbl_20543	none	STRG.21258.1	1	STRG.21258.2,blat.proc3825174.chain_2209	2
scaffold_21	spliced_intron	10990182	10990263	+	asmbl_28913	none	STRG.24580.1	1	Trinity_GG_30865_c0_g1_i1,blat.proc3825176.chain_1649	2
scaffold_9	spliced_intron	5468453	5468592	+	asmbl_54044	none	STRG.11124.2,Trinity_GG_23505_c0_g1_i2,blat.proc3825168.chain_3638	3	STRG.11124.1,blat.proc3825168.chain_3637	2
scaffold_5	alt_donor	5755722	5755723	+	asmbl_45372,asmbl_45374	none	STRG.5996.3,STRG.5996.4	2	STRG.5996.2,blat.proc3825166.chain_2158	2
scaffold_7	spliced_intron	2523136	2523439	-	asmbl_50761	none	STRG.8690.2,Trinity_GG_4961_c0_g1_i4,blat.proc3825152.chain_1170	3	STRG.8690.1,Trinity_GG_4961_c0_g1_i2,blat.proc3825152.chain_1169	3
scaffold_1	spliced_intron	14334145	14334239	-	asmbl_888,asmbl_890	none	STRG.1032.1,STRG.1032.2,blat.proc3825148.chain_1020,blat.proc3825148.chain_1022	4	STRG.1032.3,blat.proc3825148.chain_1021	2
scaffold_5	alt_donor	7320452	7320453	+	asmbl_45490,asmbl_45492	none	STRG.6129.1,blat.proc3825166.chain_2350	2	STRG.6129.2	1
scaffold_2	retained_intron	15266383	15266469	+	asmbl_25003,asmbl_25004	none	blat.proc3825164.chain_2607,blat.proc3825164.chain_2608	2	STRG.2485.1,STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2606	9
scaffold_2	alternate_exon	19087031	19087108	+	asmbl_25259	none	STRG.2776.2,Trinity_GG_18865_c0_g1_i1,blat.proc3825164.chain_3013	3	STRG.2776.1	1
scaffold_1	alternate_exon	3506126	3506169	-	asmbl_146,asmbl_148	none	STRG.221.2,STRG.221.4	2	STRG.221.1,blat.proc3825148.chain_213,blat.proc3825148.chain_214	3
scaffold_13	retained_intron	4458561	4458799	+	asmbl_10793	none	STRG.15770.2,Trinity_GG_25976_c0_g1_i2,blat.proc3825172.chain_508	3	STRG.15770.1,STRG.15770.4,Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_509,blat.proc3825172.chain_512	5
scaffold_2	spliced_intron	13071028	13071351	-	asmbl_23488,asmbl_23489,asmbl_23492	none	STRG.2337.1,STRG.2337.2,STRG.2337.3,blat.proc3825148.chain_2341,blat.proc3825148.chain_2343	5	STRG.2337.4,STRG.2337.5,blat.proc3825148.chain_2342	3
scaffold_26	retained_intron	5486047	5487189	+	asmbl_35001	none	Trinity_GG_32935_c1_g2_i4,blat.proc3825178.chain_1365,blat.proc3825178.chain_1367	3	STRG.28257.1,STRG.28257.2,Trinity_GG_32935_c1_g2_i1,blat.proc3825178.chain_1369	4
scaffold_14	spliced_intron	15565628	15565681	+	asmbl_12624	none	STRG.17796.1	1	STRG.17796.2,STRG.17796.3,blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	5
scaffold_9	spliced_intron	16569591	16569821	+	asmbl_54601	none	Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_614	2	Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_612,blat.proc3825170.chain_616	4
scaffold_3	retained_intron	7287291	7287439	-	asmbl_38960	none	STRG.3330.4,Trinity_GG_1803_c0_g1_i4,blat.proc3825148.chain_3213	3	STRG.3330.1,STRG.3330.2,STRG.3330.3,blat.proc3825148.chain_3215,blat.proc3825148.chain_3216	5
scaffold_24	starts_in_intron	3330501	3330501	-	asmbl_32816	none	blat.proc3825160.chain_3589	1	STRG.26530.1,blat.proc3825160.chain_3588	2
scaffold_6	alt_acceptor	1516493	1516494	+	asmbl_46715	none	STRG.7199.2	1	STRG.7199.1,blat.proc3825166.chain_3394	2
scaffold_22	alt_acceptor	4416173	4416174	-	asmbl_29263,asmbl_29265	none	STRG.24869.1,blat.proc3825160.chain_2020,blat.proc3825160.chain_2021	3	blat.proc3825160.chain_2000	1
scaffold_21	retained_intron	457059	457190	-	asmbl_27323,asmbl_27324	none	blat.proc3825160.chain_854,blat.proc3825160.chain_855	2	STRG.23740.1,blat.proc3825160.chain_856	2
scaffold_16	starts_in_intron	10422386	10422386	+	asmbl_16529	none	Trinity_GG_28062_c0_g2_i1,blat.proc3825174.chain_547	2	STRG.19612.1	1
scaffold_24	alternate_exon	6722963	6726452	-	asmbl_32965,asmbl_32966,asmbl_32969	none	STRG.26723.1,STRG.26723.2,blat.proc3825162.chain_100,blat.proc3825162.chain_98,blat.proc3825162.chain_99	5	blat.proc3825162.chain_96	1
scaffold_27	retained_exon	6196555	6196599	+	asmbl_36378,asmbl_36380	none	STRG.29014.1,STRG.29014.4	2	STRG.29014.3	1
scaffold_17	alt_acceptor	4675034	4675035	-	asmbl_17880	none	blat.proc3825158.chain_1233	1	STRG.20200.1,blat.proc3825158.chain_1234	2
scaffold_6	alternate_exon	1749175	1750139	-	asmbl_48120	none	STRG.7232.4	1	STRG.7232.7	1
scaffold_11	alt_donor	1606309	1606310	-	asmbl_6444	none	STRG.13339.2	1	STRG.13339.1	1
scaffold_11	alt_donor	9829435	9829436	+	asmbl_5909	none	STRG.14008.2,blat.proc3825170.chain_2556	2	STRG.14008.3,Trinity_GG_25038_c0_g1_i4,blat.proc3825170.chain_2561	3
scaffold_7	retained_exon	8813564	8814350	+	asmbl_50058	none	STRG.9124.1,blat.proc3825168.chain_1639	2	STRG.9124.2,blat.proc3825168.chain_1638	2
scaffold_7	spliced_intron	5927708	5928006	+	asmbl_49827,asmbl_49828,asmbl_49829	none	STRG.8902.1,STRG.8902.2,STRG.8902.3,Trinity_GG_22209_c0_g1_i3,Trinity_GG_22209_c0_g1_i4,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1373,blat.proc3825168.chain_1375,blat.proc3825168.chain_1376	9	Trinity_GG_22209_c0_g1_i2,blat.proc3825168.chain_1374	2
scaffold_21	alt_acceptor	6536222	6536223	+	asmbl_28664,asmbl_28665	none	STRG.24178.2,blat.proc3825176.chain_1392	2	STRG.24178.1,blat.proc3825176.chain_1391,blat.proc3825176.chain_1393	3
scaffold_17	alt_donor	607174	607175	-	asmbl_17630,asmbl_17633	none	STRG.19912.1,STRG.19912.2	2	STRG.19912.3,STRG.19912.4	2
scaffold_13	alt_acceptor	8955243	8955244	+	asmbl_11168	none	blat.proc3825172.chain_869	1	STRG.16167.2,STRG.16167.3,blat.proc3825172.chain_871	3
scaffold_11	starts_in_intron	3187823	3187823	+	asmbl_5408	none	Trinity_GG_24678_c0_g1_i2,blat.proc3825170.chain_1956	2	blat.proc3825170.chain_1957,blat.proc3825170.chain_1958	2
scaffold_22	starts_in_intron	5834740	5834740	-	asmbl_29291	none	blat.proc3825160.chain_2128	1	STRG.24936.1	1
scaffold_14	retained_intron	217693	217891	-	asmbl_12805,asmbl_12806,asmbl_12807,asmbl_12808	none	STRG.16718.1,STRG.16718.2,STRG.16718.3,blat.proc3825156.chain_1511,blat.proc3825156.chain_1512,blat.proc3825156.chain_1513,blat.proc3825156.chain_1514	7	STRG.16718.4	1
scaffold_2	retained_intron	14080181	14080211	+	asmbl_24875	none	STRG.2404.3	1	STRG.2404.1,STRG.2404.2	2
scaffold_15	spliced_intron	6882636	6882713	-	asmbl_14259,asmbl_14260,asmbl_14262,asmbl_14263,asmbl_14264,asmbl_14265,asmbl_14267,asmbl_14268,asmbl_14269,asmbl_14270	none	STRG.18301.1,STRG.18301.2,STRG.18301.3,STRG.18301.4,STRG.18301.5,STRG.18301.6,STRG.18301.7,Trinity_GG_10293_c0_g1_i10,Trinity_GG_10293_c0_g1_i6,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3154,blat.proc3825156.chain_3156,blat.proc3825156.chain_3157,blat.proc3825156.chain_3159	16	Trinity_GG_10293_c0_g1_i4,blat.proc3825156.chain_3155	2
scaffold_20	alt_acceptor	476091	476092	+	asmbl_26362	none	STRG.22751.1	1	STRG.22751.2	1
scaffold_5	skipped_exon	18819679	18821046	+	asmbl_46291	none	STRG.7010.1,blat.proc3825166.chain_3170	2	STRG.7010.2,STRG.7010.3	2
scaffold_7	retained_exon	5235308	5235518	+	asmbl_49798	none	STRG.8866.1,blat.proc3825168.chain_1366	2	blat.proc3825168.chain_1364	1
scaffold_14	retained_intron	1111237	1111348	+	asmbl_11807	none	STRG.16770.1,blat.proc3825172.chain_1532	2	STRG.16770.2,blat.proc3825172.chain_1531	2
scaffold_3	spliced_intron	9518073	9518444	+	asmbl_40226,asmbl_40227,asmbl_40228,asmbl_40229	none	STRG.3436.1,STRG.3436.2,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3676,blat.proc3825164.chain_3677,blat.proc3825164.chain_3678	7	Trinity_GG_19245_c0_g1_i2,blat.proc3825164.chain_3674	2
scaffold_27	starts_in_intron	3019905	3019905	+	asmbl_36169,asmbl_36171,asmbl_36172,asmbl_36173	none	blat.proc3825178.chain_1868,blat.proc3825178.chain_1872,blat.proc3825178.chain_1873,blat.proc3825178.chain_1874	4	STRG.28790.1,STRG.28790.2	2
scaffold_3	alt_donor	589564	589565	+	asmbl_39811	none	STRG.2894.2,blat.proc3825164.chain_3141	2	STRG.2894.1	1
scaffold_10	ends_in_intron	11502006	11502006	+	asmbl_3467	none	blat.proc3825170.chain_1366	1	STRG.12804.1,blat.proc3825170.chain_1363,blat.proc3825170.chain_1364	3
scaffold_12	alt_acceptor	6526866	6526867	-	asmbl_8540	none	STRG.14748.2,blat.proc3825154.chain_3260	2	STRG.14748.1	1
scaffold_4	retained_exon	13076259	13076299	+	asmbl_41775	none	STRG.4947.3,blat.proc3825166.chain_1381	2	STRG.4947.4,STRG.4947.5,blat.proc3825166.chain_1382	3
scaffold_10	spliced_intron	635222	635413	-	asmbl_3973	none	STRG.11945.2,blat.proc3825154.chain_483	2	STRG.11945.3,STRG.11945.4,Trinity_GG_6642_c0_g1_i1,Trinity_GG_6642_c0_g1_i2,blat.proc3825154.chain_482,blat.proc3825154.chain_485	6
scaffold_12	alt_acceptor	5512547	5512548	+	asmbl_7659,asmbl_7662	none	STRG.14707.1,STRG.14707.2,blat.proc3825170.chain_3234	3	STRG.14707.3,blat.proc3825170.chain_3235	2
scaffold_6	skipped_exon	18916887	18917456	-	asmbl_49290,asmbl_49291	none	STRG.8561.2,STRG.8561.3	2	STRG.8561.1,blat.proc3825152.chain_1002,blat.proc3825152.chain_1003	3
scaffold_4	ends_in_intron	12711108	12711108	+	asmbl_41739	none	STRG.4912.2,blat.proc3825166.chain_1321	2	STRG.4912.1,blat.proc3825166.chain_1322,blat.proc3825166.chain_1323	3
scaffold_21	alt_donor	256705	256706	-	asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27288,asmbl_27290,asmbl_27292,asmbl_27293,asmbl_27295,asmbl_27296,asmbl_27297	none	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.6,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_810	10	STRG.23725.5,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_802,blat.proc3825160.chain_807,blat.proc3825160.chain_811,blat.proc3825160.chain_812,blat.proc3825160.chain_813	7
scaffold_15	alternate_exon	16342534	16345669	-	asmbl_14829	none	STRG.18987.1,blat.proc3825158.chain_57	2	STRG.18987.2,blat.proc3825158.chain_58	2
scaffold_2	spliced_intron	15266137	15266197	+	asmbl_24996,asmbl_24999,asmbl_25000,asmbl_25001,asmbl_25003	none	STRG.2485.1,blat.proc3825164.chain_2601,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2607	6	STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2602,blat.proc3825164.chain_2606,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	6
scaffold_14	spliced_intron	1715156	1715260	-	asmbl_12913	none	STRG.16805.1,Trinity_GG_9425_c0_g1_i1,blat.proc3825156.chain_1645	3	blat.proc3825156.chain_1644	1
scaffold_25	alt_donor	5153947	5153948	-	asmbl_34242	none	STRG.27436.1,Trinity_GG_15381_c0_g1_i2,blat.proc3825162.chain_794	3	STRG.27436.2,Trinity_GG_15381_c0_g1_i1,blat.proc3825162.chain_795	3
scaffold_4	starts_in_intron	16313013	16313013	-	asmbl_43151	none	blat.proc3825150.chain_1333	1	STRG.5199.1,blat.proc3825150.chain_1332	2
scaffold_24	alternate_exon	5841645	5841706	+	asmbl_32234	none	STRG.26646.2,blat.proc3825176.chain_3590	2	STRG.26646.1,blat.proc3825176.chain_3591	2
scaffold_11	spliced_intron	8082241	8082340	+	asmbl_5715	none	Trinity_GG_24895_c0_g1_i3,blat.proc3825170.chain_2310	2	STRG.13816.1,Trinity_GG_24895_c0_g1_i1,Trinity_GG_24895_c0_g1_i2,Trinity_GG_24895_c0_g1_i5,blat.proc3825170.chain_2309,blat.proc3825170.chain_2311,blat.proc3825170.chain_2312	7
scaffold_1	alternate_exon	11169949	11170150	+	asmbl_2075	none	STRG.741.2	1	STRG.741.1,blat.proc3825164.chain_872	2
scaffold_11	alt_donor	8903616	8903617	-	asmbl_6888	none	Trinity_GG_7763_c0_g1_i2,blat.proc3825154.chain_2431	2	STRG.13912.1,Trinity_GG_7763_c0_g1_i1,blat.proc3825154.chain_2430	3
scaffold_1	retained_intron	14375886	14375983	+	asmbl_2391	none	Trinity_GG_17951_c0_g1_i2,blat.proc3825164.chain_1244	2	STRG.1038.1,blat.proc3825164.chain_1243	2
scaffold_20	retained_intron	10986544	10986914	+	asmbl_27005	none	Trinity_GG_30383_c0_g1_i1,blat.proc3825176.chain_810	2	STRG.23622.1,Trinity_GG_30383_c0_g1_i2,blat.proc3825176.chain_809	3
scaffold_4	ends_in_intron	4834664	4834664	+	asmbl_41309	none	STRG.4373.1,blat.proc3825166.chain_836	2	STRG.4373.2,blat.proc3825166.chain_837	2
scaffold_14	ends_in_intron	8349660	8349660	-	asmbl_13293	none	blat.proc3825156.chain_2078	1	STRG.17268.2	1
scaffold_27	retained_intron	314755	315174	-	asmbl_36658,asmbl_36659,asmbl_36662,asmbl_36663	none	STRG.28557.1,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725	4	blat.proc3825162.chain_1728	1
scaffold_23	retained_intron	6688346	6688422	+	asmbl_31647,asmbl_31648	none	blat.proc3825176.chain_2933,blat.proc3825176.chain_2935	2	STRG.26003.2	1
scaffold_2	retained_intron	2960170	2960333	+	asmbl_24259	none	STRG.1727.1,Trinity_GG_18298_c0_g1_i1	2	STRG.1727.2,Trinity_GG_18298_c0_g1_i2	2
scaffold_2	starts_in_intron	13897278	13897278	-	asmbl_23531	none	blat.proc3825148.chain_2387	1	STRG.2384.2,blat.proc3825148.chain_2389	2
scaffold_28	spliced_intron	2729367	2729694	-	asmbl_38081	none	STRG.29466.1,blat.proc3825162.chain_2641	2	blat.proc3825162.chain_2640	1
scaffold_23	starts_in_intron	1196772	1196772	+	asmbl_31315	none	Trinity_GG_31460_c0_g2_i1,blat.proc3825176.chain_2592	2	STRG.25599.1,blat.proc3825176.chain_2589,blat.proc3825176.chain_2591	3
scaffold_20	retained_intron	1092927	1093085	+	asmbl_26407	none	Trinity_GG_29908_c0_g1_i2	1	STRG.22816.1	1
scaffold_15	alt_acceptor	15410225	15410226	+	asmbl_15767,asmbl_15769	none	STRG.18930.1,STRG.18930.6,blat.proc3825172.chain_3588,blat.proc3825172.chain_3589	4	STRG.18930.10,STRG.18930.2,STRG.18930.3,STRG.18930.5,STRG.18930.7,STRG.18930.9,blat.proc3825172.chain_3586,blat.proc3825172.chain_3587,blat.proc3825172.chain_3590	9
scaffold_2	starts_in_intron	15227673	15227673	+	asmbl_24990	none	STRG.2473.1	1	Trinity_GG_18714_c0_g1_i1,blat.proc3825164.chain_2737	2
scaffold_10	alt_acceptor	5495944	5495945	-	asmbl_4365,asmbl_4366	none	STRG.12384.1,blat.proc3825154.chain_925,blat.proc3825154.chain_926	3	blat.proc3825154.chain_927	1
scaffold_19	alt_donor	7964977	7964978	-	asmbl_22268	none	STRG.22260.2,blat.proc3825158.chain_3045	2	STRG.22260.1	1
scaffold_16	starts_in_intron	430441	430441	-	asmbl_16878	none	blat.proc3825158.chain_205	1	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_196,blat.proc3825158.chain_197,blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_200,blat.proc3825158.chain_201,blat.proc3825158.chain_202,blat.proc3825158.chain_203,blat.proc3825158.chain_204	11
scaffold_28	starts_in_intron	760844	760844	-	asmbl_37935,asmbl_37936	none	STRG.29291.2,blat.proc3825162.chain_2384	2	STRG.29291.1,STRG.29291.3,STRG.29291.4,blat.proc3825162.chain_2381,blat.proc3825162.chain_2382,blat.proc3825162.chain_2383	6
scaffold_25	ends_in_intron	9503889	9503889	-	asmbl_34506	none	blat.proc3825162.chain_1077	1	STRG.27764.1,blat.proc3825162.chain_1078	2
scaffold_6	skipped_exon	9131836	9134144	+	asmbl_47209,asmbl_47219,asmbl_47221	none	STRG.7790.2,blat.proc3825168.chain_211,blat.proc3825168.chain_219	3	STRG.7790.1,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_216	4
scaffold_8	alt_acceptor	4961112	4961113	-	asmbl_51820,asmbl_51822	none	STRG.9966.1,blat.proc3825152.chain_2198,blat.proc3825152.chain_2199	3	STRG.9966.2,blat.proc3825152.chain_2197,blat.proc3825152.chain_2200	3
scaffold_12	starts_in_intron	7409967	7409967	-	asmbl_8579	none	STRG.14824.2,blat.proc3825154.chain_3333	2	STRG.14824.1,STRG.14824.3	2
scaffold_14	alternate_exon	15043956	15044003	-	asmbl_13703	none	STRG.17735.1	1	STRG.17735.2	1
scaffold_13	spliced_intron	6949079	6949233	-	asmbl_9823	none	STRG.15984.3	1	STRG.15984.1,STRG.15984.6,Trinity_GG_8951_c0_g1_i5	3
scaffold_9	retained_intron	637042	637113	+	asmbl_53779	none	STRG.10792.2	1	STRG.10792.1	1
scaffold_24	retained_intron	9952412	9952699	-	asmbl_33159	none	Trinity_GG_15063_c0_g1_i6	1	Trinity_GG_15063_c0_g1_i3	1
scaffold_6	alt_donor	7169018	7169019	+	asmbl_47052	none	STRG.7628.1	1	STRG.7628.3	1
scaffold_1	alt_acceptor	10410265	10410266	-	asmbl_578,asmbl_581	none	STRG.676.1,blat.proc3825148.chain_694,blat.proc3825148.chain_695	3	STRG.676.2,blat.proc3825148.chain_693	2
scaffold_13	starts_in_intron	4242577	4242577	-	asmbl_9612	none	STRG.15752.2,blat.proc3825156.chain_593	2	STRG.15752.1,STRG.15752.3,STRG.15752.4,STRG.15752.5,blat.proc3825156.chain_589,blat.proc3825156.chain_590,blat.proc3825156.chain_591,blat.proc3825156.chain_592	8
scaffold_16	retained_exon	672866	672891	+	asmbl_16032,asmbl_16036	none	STRG.19045.2,STRG.19045.3,Trinity_GG_27750_c0_g1_i5,blat.proc3825172.chain_3698,blat.proc3825172.chain_3701	5	STRG.19045.5,Trinity_GG_27750_c0_g1_i4,blat.proc3825172.chain_3700	3
scaffold_11	spliced_intron	14532679	14532928	+	asmbl_6090	none	STRG.14252.2,Trinity_GG_25124_c0_g1_i1,blat.proc3825170.chain_2710	3	STRG.14252.1,Trinity_GG_25124_c0_g1_i4,blat.proc3825170.chain_2708,blat.proc3825170.chain_2709	4
scaffold_6	alt_donor	11483453	11483454	+	asmbl_47333	none	STRG.7943.4	1	STRG.7943.1,STRG.7943.2,STRG.7943.3,blat.proc3825168.chain_309,blat.proc3825168.chain_310,blat.proc3825168.chain_312,blat.proc3825168.chain_313,blat.proc3825168.chain_314	8
scaffold_16	spliced_intron	9033041	9033770	+	asmbl_16456	none	STRG.19515.4,blat.proc3825174.chain_443	2	STRG.19515.2,STRG.19515.3,Trinity_GG_28002_c0_g1_i3,blat.proc3825174.chain_440,blat.proc3825174.chain_441	5
scaffold_22	skipped_exon	7691841	7693876	+	asmbl_30210	none	blat.proc3825176.chain_2183	1	STRG.25121.1	1
scaffold_2	ends_in_intron	16403910	16403910	+	asmbl_25139	none	blat.proc3825164.chain_2873	1	STRG.2582.1,blat.proc3825164.chain_2870,blat.proc3825164.chain_2872	3
scaffold_13	retained_intron	88373	88517	+	asmbl_10460	none	blat.proc3825172.chain_143	1	STRG.15429.1,STRG.15429.2,blat.proc3825172.chain_142	3
scaffold_14	alternate_exon	9294393	9294437	-	asmbl_13379	none	blat.proc3825156.chain_2166	1	STRG.17341.1,STRG.17341.2,STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2172,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	12
scaffold_3	retained_intron	6200511	6200607	-	asmbl_38919	none	STRG.3263.3,Trinity_GG_1767_c0_g1_i2,blat.proc3825148.chain_3110	3	STRG.3263.1,STRG.3263.2,Trinity_GG_1767_c0_g1_i1,blat.proc3825148.chain_3109	4
scaffold_21	alt_acceptor	5958454	5958455	-	asmbl_27711	none	blat.proc3825160.chain_1287	1	STRG.24127.1,blat.proc3825160.chain_1286	2
scaffold_6	starts_in_intron	2699226	2699226	-	asmbl_48148	none	blat.proc3825150.chain_3385	1	STRG.7265.1,blat.proc3825150.chain_3386	2
scaffold_21	alt_acceptor	679478	679479	-	asmbl_27338	none	STRG.23755.2,blat.proc3825160.chain_885	2	STRG.23755.4,blat.proc3825160.chain_886	2
scaffold_25	skipped_exon	8270367	8270753	-	asmbl_34428	none	Trinity_GG_15513_c0_g1_i2,blat.proc3825162.chain_1038	2	STRG.27658.1,Trinity_GG_15513_c0_g1_i1,blat.proc3825162.chain_1037	3
scaffold_20	retained_intron	11678784	11679395	-	asmbl_26178,asmbl_26181	none	STRG.23672.2,blat.proc3825160.chain_758,blat.proc3825160.chain_759	3	STRG.23672.1,blat.proc3825160.chain_760,blat.proc3825160.chain_761	3
scaffold_5	retained_exon	7030345	7030432	+	asmbl_45473,asmbl_45474,asmbl_45475,asmbl_45477	none	STRG.6116.1,STRG.6116.2,STRG.6116.3,blat.proc3825166.chain_2374	4	STRG.6116.4,Trinity_GG_20674_c0_g1_i2,blat.proc3825166.chain_2372	3
scaffold_1	retained_intron	6682486	6683305	+	asmbl_1848	none	Trinity_GG_17600_c0_g1_i1,blat.proc3825164.chain_590	2	STRG.460.1,Trinity_GG_17600_c0_g1_i2,blat.proc3825164.chain_591	3
scaffold_21	alternate_exon	6486249	6487279	+	asmbl_28650,asmbl_28651	none	STRG.24171.1,STRG.24171.2,blat.proc3825176.chain_1385	3	STRG.24171.3	1
scaffold_5	ends_in_intron	2552963	2552963	+	asmbl_45179	none	Trinity_GG_20474_c2_g1_i1,blat.proc3825166.chain_2021	2	STRG.5781.1,blat.proc3825166.chain_2019	2
scaffold_15	spliced_intron	9573070	9573444	-	asmbl_14382,asmbl_14383	none	STRG.18476.1,blat.proc3825156.chain_3280,blat.proc3825156.chain_3281	3	Trinity_GG_10357_c3_g1_i1,blat.proc3825156.chain_3282	2
scaffold_10	retained_exon	4057952	4057995	-	asmbl_4252,asmbl_4255	none	STRG.12246.2,STRG.12246.4,blat.proc3825154.chain_822,blat.proc3825154.chain_824	4	STRG.12246.1,STRG.12246.3,STRG.12246.6,blat.proc3825154.chain_820,blat.proc3825154.chain_823	5
scaffold_19	starts_in_intron	6206167	6206167	+	asmbl_21396	none	Trinity_GG_29518_c0_g1_i4,blat.proc3825174.chain_3112	2	STRG.22150.2,blat.proc3825174.chain_3111	2
scaffold_17	alt_acceptor	13887063	13887064	-	asmbl_18385	none	STRG.20865.2	1	STRG.20865.1	1
scaffold_11	retained_intron	4666033	4666246	+	asmbl_5495	none	blat.proc3825170.chain_2045,blat.proc3825170.chain_2047	2	STRG.13563.2,blat.proc3825170.chain_2046	2
scaffold_23	spliced_intron	10213636	10214194	+	asmbl_31841,asmbl_31842	none	STRG.26229.1,STRG.26229.3,blat.proc3825176.chain_3227,blat.proc3825176.chain_3231	4	STRG.26229.2,Trinity_GG_31817_c0_g1_i3,blat.proc3825176.chain_3229,blat.proc3825176.chain_3230	4
scaffold_22	spliced_intron	11731907	11731990	+	asmbl_30423	none	Trinity_GG_31396_c0_g1_i1	1	Trinity_GG_31396_c0_g1_i2	1
scaffold_8	alternate_exon	9116225	9116290	-	asmbl_52001	none	STRG.10169.2	1	STRG.10169.1,blat.proc3825152.chain_2371,blat.proc3825152.chain_2372,blat.proc3825152.chain_2373	4
scaffold_17	alt_donor	2765655	2765656	-	asmbl_17784	none	STRG.20078.2,blat.proc3825158.chain_1112	2	STRG.20078.1,blat.proc3825158.chain_1111	2
scaffold_13	retained_exon	4243881	4243955	-	asmbl_9610,asmbl_9613,asmbl_9617	none	STRG.15752.4,STRG.15752.5,blat.proc3825156.chain_589,blat.proc3825156.chain_591,blat.proc3825156.chain_592	5	STRG.15752.1,STRG.15752.3,blat.proc3825156.chain_590	3
scaffold_6	starts_in_intron	1747773	1747773	+	asmbl_46738	none	Trinity_GG_21249_c0_g1_i3,blat.proc3825166.chain_3353	2	STRG.7231.1,STRG.7231.2,STRG.7231.3,STRG.7231.4,STRG.7231.5,Trinity_GG_21249_c0_g1_i1,blat.proc3825166.chain_3352,blat.proc3825166.chain_3354	8
scaffold_22	alt_acceptor	6956522	6956523	-	asmbl_29352,asmbl_29354	none	STRG.25024.2,STRG.25024.3	2	STRG.25024.1	1
scaffold_16	spliced_intron	14560038	14560115	-	asmbl_17466	none	STRG.19840.1,blat.proc3825158.chain_882	2	STRG.19840.2	1
scaffold_12	retained_intron	9861352	9861459	+	asmbl_7887	none	blat.proc3825170.chain_3458	1	STRG.14958.1,blat.proc3825170.chain_3457	2
scaffold_9	alternate_exon	15249777	15249894	+	asmbl_54547	none	STRG.11716.2,Trinity_GG_23873_c0_g1_i1,blat.proc3825170.chain_547	3	STRG.11716.1,Trinity_GG_23873_c0_g1_i2	2
scaffold_23	retained_intron	3656249	3656339	+	asmbl_31461	none	STRG.25792.2,Trinity_GG_31535_c0_g1_i3,blat.proc3825176.chain_2720	3	STRG.25792.1,Trinity_GG_31535_c0_g1_i1,blat.proc3825176.chain_2718,blat.proc3825176.chain_2719	4
scaffold_6	spliced_intron	11668496	11669586	+	asmbl_47357	none	STRG.7960.2	1	Trinity_GG_21670_c0_g1_i1,blat.proc3825168.chain_406	2
scaffold_3	alt_donor	11795519	11795520	-	asmbl_39192	none	STRG.3614.2,Trinity_GG_1970_c0_g1_i1,blat.proc3825148.chain_3487	3	STRG.3614.1,Trinity_GG_1970_c0_g1_i2,blat.proc3825148.chain_3486	3
scaffold_11	retained_intron	5501775	5501898	-	asmbl_6664,asmbl_6666	none	STRG.13620.2,blat.proc3825154.chain_2127,blat.proc3825154.chain_2129	3	blat.proc3825154.chain_2130	1
scaffold_13	alt_donor	16142554	16142555	+	asmbl_11559	none	blat.proc3825172.chain_1451	1	STRG.16655.1	1
scaffold_4	alt_donor	16639123	16639124	+	asmbl_41987	none	STRG.5243.2	1	STRG.5243.1	1
scaffold_16	starts_in_intron	7098141	7098141	+	asmbl_16325	none	blat.proc3825174.chain_318	1	STRG.19387.1,STRG.19387.2,blat.proc3825174.chain_316,blat.proc3825174.chain_317	4
scaffold_10	ends_in_intron	10277977	10277977	-	asmbl_4713	none	Trinity_GG_7121_c0_g1_i4,blat.proc3825154.chain_1340	2	STRG.12719.2,STRG.12719.3,blat.proc3825154.chain_1345,blat.proc3825154.chain_1346,blat.proc3825154.chain_1348	5
scaffold_23	alternate_exon	6332800	6334736	+	asmbl_31613	none	STRG.25988.3,blat.proc3825176.chain_2910	2	blat.proc3825176.chain_2911	1
scaffold_26	retained_intron	5795098	5795276	-	asmbl_35625,asmbl_35627	none	STRG.28282.2,STRG.28282.3	2	STRG.28282.1	1
scaffold_2	spliced_intron	10373407	10373567	-	asmbl_23417	none	blat.proc3825148.chain_2238	1	STRG.2210.1,STRG.2210.2,blat.proc3825148.chain_2236,blat.proc3825148.chain_2237	4
scaffold_3	ends_in_intron	17116737	17116737	+	asmbl_40644	none	blat.proc3825166.chain_422	1	STRG.3952.1,STRG.3952.2,STRG.3952.3,blat.proc3825166.chain_421	4
scaffold_11	starts_in_intron	11999789	11999789	-	asmbl_7056,asmbl_7057	none	STRG.14126.1,STRG.14126.2,blat.proc3825154.chain_2671	3	STRG.14126.4,Trinity_GG_7897_c0_g1_i1,blat.proc3825154.chain_2673	3
scaffold_3	alt_donor	10304251	10304252	+	asmbl_40265	none	Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700	2	STRG.3476.1,STRG.3476.2,Trinity_GG_19250_c1_g1_i1,blat.proc3825164.chain_3702	4
scaffold_7	ends_in_intron	265488	265488	+	asmbl_49546	none	Trinity_GG_22029_c2_g1_i1,blat.proc3825168.chain_1055	2	STRG.8598.1,STRG.8598.3,STRG.8598.4,STRG.8598.6	4
scaffold_24	alt_donor	2466479	2466480	-	asmbl_32788,asmbl_32791	none	STRG.26473.1,STRG.26473.2,blat.proc3825160.chain_3605	3	STRG.26473.3,STRG.26473.4,blat.proc3825160.chain_3604	3
scaffold_10	spliced_intron	13521752	13521830	+	asmbl_3612	none	STRG.12949.2,blat.proc3825170.chain_1497	2	STRG.12949.1,Trinity_GG_24413_c0_g1_i2,blat.proc3825170.chain_1498	3
scaffold_18	retained_exon	12935380	12935438	+	asmbl_20980	none	STRG.21740.2	1	STRG.21740.1	1
scaffold_10	alt_donor	14699362	14699363	+	asmbl_3654,asmbl_3655,asmbl_3657	none	STRG.13024.1,STRG.13024.2,blat.proc3825170.chain_1624,blat.proc3825170.chain_1625,blat.proc3825170.chain_1628	5	blat.proc3825170.chain_1626	1
scaffold_4	ends_in_intron	8621696	8621696	-	asmbl_42781	none	Trinity_GG_2618_c0_g1_i3,blat.proc3825150.chain_898	2	STRG.4680.2,blat.proc3825150.chain_899	2
scaffold_8	alternate_exon	17811862	17818769	+	asmbl_53506,asmbl_53509	none	STRG.10693.1,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3180,blat.proc3825168.chain_3184	4	STRG.10693.3,Trinity_GG_23223_c0_g1_i1,blat.proc3825168.chain_3179	3
scaffold_8	ends_in_intron	4668907	4668907	-	asmbl_51788	none	Trinity_GG_5533_c0_g2_i1,blat.proc3825152.chain_2180	2	blat.proc3825152.chain_2179	1
scaffold_27	starts_in_intron	2116151	2116151	+	asmbl_36070	none	blat.proc3825178.chain_1852	1	STRG.28700.1	1
scaffold_17	retained_intron	10048773	10050113	+	asmbl_19160	none	STRG.20618.3,Trinity_GG_28608_c0_g1_i3,Trinity_GG_28608_c1_g1_i1,blat.proc3825174.chain_1498,blat.proc3825174.chain_1501	5	blat.proc3825174.chain_1496	1
scaffold_13	alt_acceptor	4244426	4244427	-	asmbl_9611,asmbl_9613	none	STRG.15752.3,STRG.15752.5,blat.proc3825156.chain_590,blat.proc3825156.chain_591	4	STRG.15752.1,STRG.15752.4,blat.proc3825156.chain_589,blat.proc3825156.chain_592	4
scaffold_2	retained_intron	7942373	7942526	+	asmbl_24603	none	Trinity_GG_18487_c0_g1_i6,blat.proc3825164.chain_2247	2	STRG.2090.1,STRG.2090.2,Trinity_GG_18487_c0_g1_i1,Trinity_GG_18487_c0_g1_i7,Trinity_GG_18487_c0_g1_i8,blat.proc3825164.chain_2244,blat.proc3825164.chain_2249,blat.proc3825164.chain_2250	8
scaffold_9	retained_intron	9853059	9854248	+	asmbl_54266	none	blat.proc3825170.chain_206	1	STRG.11357.1,blat.proc3825170.chain_207	2
scaffold_1	skipped_exon	18763264	18765210	+	asmbl_2571	none	STRG.1311.2	1	STRG.1311.3	1
scaffold_5	spliced_intron	14262861	14263469	+	asmbl_45915	none	STRG.6638.2,blat.proc3825166.chain_2785	2	blat.proc3825166.chain_2789,blat.proc3825166.chain_2790,blat.proc3825166.chain_2791	3
scaffold_18	skipped_exon	13267632	13268828	+	asmbl_21005	none	STRG.21764.2,blat.proc3825174.chain_2762	2	STRG.21764.1,blat.proc3825174.chain_2763	2
scaffold_42	starts_in_intron	25856	25856	+	asmbl_43686	none	Trinity_GG_33946_c0_g1_i2,blat.proc3825178.chain_3176	2	STRG.30042.1,Trinity_GG_33946_c0_g1_i1,blat.proc3825178.chain_3177	3
scaffold_6	starts_in_intron	8587253	8587253	+	asmbl_47162	none	Trinity_GG_21555_c0_g1_i2,blat.proc3825168.chain_171	2	STRG.7739.1,Trinity_GG_21555_c0_g1_i9,blat.proc3825168.chain_170,blat.proc3825168.chain_173	4
scaffold_28	alternate_exon	3219827	3219888	+	asmbl_37457	none	STRG.29537.1	1	STRG.29537.2	1
scaffold_1545	retained_exon	519	1660	-	asmbl_15970	none	STRG.30622.1	1	STRG.30622.2	1
scaffold_3	retained_intron	10849045	10849122	+	asmbl_40306	none	STRG.3520.2,Trinity_GG_19297_c0_g1_i1,blat.proc3825166.chain_33	3	STRG.3520.1,Trinity_GG_19297_c0_g1_i2,blat.proc3825166.chain_32	3
scaffold_11	alternate_exon	11315519	11315565	+	asmbl_5964	none	STRG.14080.1,blat.proc3825170.chain_2626	2	STRG.14080.2,blat.proc3825170.chain_2625	2
scaffold_27	spliced_intron	975659	975913	+	asmbl_35967,asmbl_35968,asmbl_35970,asmbl_35971,asmbl_35973,asmbl_35975	none	STRG.28595.1,STRG.28595.4,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i12,Trinity_GG_33133_c0_g1_i4,Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1712,blat.proc3825178.chain_1717,blat.proc3825178.chain_1719,blat.proc3825178.chain_1720	10	blat.proc3825178.chain_1714	1
scaffold_12	ends_in_intron	4786751	4786751	-	asmbl_8446,asmbl_8454	none	STRG.14660.6,blat.proc3825154.chain_3149	2	STRG.14660.3,STRG.14660.4,blat.proc3825154.chain_3147,blat.proc3825154.chain_3148,blat.proc3825154.chain_3153	5
scaffold_8	starts_in_intron	18420202	18420202	-	asmbl_52541	none	Trinity_GG_5972_c0_g1_i2,blat.proc3825152.chain_3010	2	STRG.10740.1,STRG.10740.2,Trinity_GG_5972_c0_g1_i1,Trinity_GG_5972_c0_g1_i3,blat.proc3825152.chain_3008,blat.proc3825152.chain_3009	6
scaffold_5	alt_donor	4696426	4696427	+	asmbl_45289	none	STRG.5925.2	1	STRG.5925.3,blat.proc3825166.chain_2149,blat.proc3825166.chain_2150	3
scaffold_20	alternate_exon	9898479	9898775	+	asmbl_26909	none	STRG.23531.2,Trinity_GG_30291_c0_g1_i1,blat.proc3825176.chain_656	3	STRG.23531.1,Trinity_GG_30291_c0_g1_i2	2
scaffold_9	starts_in_intron	6404035	6404035	+	asmbl_54095	none	blat.proc3825168.chain_3673	1	STRG.11175.1,STRG.11175.2,STRG.11175.3,Trinity_GG_23514_c0_g1_i1,Trinity_GG_23514_c0_g1_i3,blat.proc3825168.chain_3671,blat.proc3825168.chain_3672	7
scaffold_7	starts_in_intron	6656964	6656964	-	asmbl_50931	none	blat.proc3825152.chain_1407	1	STRG.8943.1,blat.proc3825152.chain_1403,blat.proc3825152.chain_1405	3
scaffold_28	spliced_intron	9441283	9441479	-	asmbl_38515	none	STRG.29974.1	1	blat.proc3825162.chain_3166	1
scaffold_24	spliced_intron	6297525	6297691	+	asmbl_32299	none	STRG.26687.2,Trinity_GG_32069_c0_g1_i2,blat.proc3825176.chain_3643	3	STRG.26687.3,Trinity_GG_32069_c0_g1_i3,blat.proc3825176.chain_3642	3
scaffold_6	starts_in_intron	17383369	17383369	+	asmbl_47747	none	Trinity_GG_21955_c0_g1_i3,blat.proc3825168.chain_908	2	STRG.8444.1,STRG.8444.2,Trinity_GG_21955_c0_g1_i4,blat.proc3825168.chain_907	4
scaffold_27	retained_intron	2548208	2548242	+	asmbl_36092,asmbl_36093	none	STRG.28732.1,STRG.28732.3,blat.proc3825178.chain_1886	3	blat.proc3825178.chain_1887	1
scaffold_26	retained_intron	10119226	10119413	-	asmbl_35822	none	STRG.28530.3	1	STRG.28530.1,STRG.28530.2,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,Trinity_GG_15946_c0_g1_i8,blat.proc3825162.chain_1709,blat.proc3825162.chain_1710,blat.proc3825162.chain_1712,blat.proc3825162.chain_1715	10
scaffold_1	alternate_exon	17861042	17861598	-	asmbl_1065	none	STRG.1250.1,Trinity_GG_629_c0_g1_i2,blat.proc3825148.chain_1197	3	STRG.1250.2	1
scaffold_11	alt_acceptor	171670	171671	+	asmbl_5260	none	STRG.13244.2,blat.proc3825170.chain_1820	2	STRG.13244.1	1
scaffold_13	spliced_intron	16460036	16460350	-	asmbl_10301	none	STRG.16703.1,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1489	3	STRG.16703.2,blat.proc3825156.chain_1486	2
scaffold_12	spliced_intron	15012722	15012846	-	asmbl_9033,asmbl_9035	none	STRG.15302.2,blat.proc3825156.chain_107,blat.proc3825156.chain_109	3	STRG.15302.1,blat.proc3825156.chain_106,blat.proc3825156.chain_108,blat.proc3825156.chain_110	4
scaffold_3	ends_in_intron	5750936	5750936	+	asmbl_40076	none	blat.proc3825164.chain_3413	1	STRG.3240.1,STRG.3240.2,STRG.3240.3,Trinity_GG_19095_c0_g1_i4,blat.proc3825164.chain_3412	5
scaffold_20	retained_intron	10114940	10115029	-	asmbl_26081	none	STRG.23563.1,blat.proc3825160.chain_647,blat.proc3825160.chain_648	3	STRG.23563.2,STRG.23563.3	2
scaffold_10	retained_exon	7504235	7504270	+	asmbl_3278	none	STRG.12545.1,blat.proc3825170.chain_1179	2	blat.proc3825170.chain_1180	1
scaffold_6	alt_donor	11482800	11482801	+	asmbl_47327	none	STRG.7943.2,blat.proc3825168.chain_309	2	STRG.7943.1,STRG.7943.3,blat.proc3825168.chain_310,blat.proc3825168.chain_312,blat.proc3825168.chain_314	5
scaffold_16	alt_donor	11767318	11767319	-	asmbl_17369	none	STRG.19697.1	1	blat.proc3825158.chain_767	1
scaffold_1	retained_intron	1271968	1272117	-	asmbl_62	none	Trinity_GG_39_c0_g1_i2,blat.proc3825148.chain_76	2	STRG.73.1,Trinity_GG_39_c0_g1_i1,blat.proc3825148.chain_77	3
scaffold_10	skipped_exon	1490744	1492348	-	asmbl_4063	none	STRG.12025.1,blat.proc3825154.chain_513	2	STRG.12025.2,blat.proc3825154.chain_512	2
scaffold_5	alternate_exon	15044119	15044234	-	asmbl_44638	none	STRG.6698.3	1	STRG.6698.6,Trinity_GG_3732_c0_g1_i2,blat.proc3825150.chain_2825	3
scaffold_14	retained_exon	15585637	15585678	+	asmbl_12628	none	STRG.17811.3,blat.proc3825172.chain_2554	2	STRG.17811.1,blat.proc3825172.chain_2556	2
scaffold_11	spliced_intron	2061501	2061594	+	asmbl_5354	none	STRG.13366.4,blat.proc3825170.chain_1926	2	STRG.13366.2,STRG.13366.3,blat.proc3825170.chain_1922,blat.proc3825170.chain_1924	4
scaffold_17	retained_intron	8540373	8540456	+	asmbl_18992	none	STRG.20467.1,blat.proc3825174.chain_1315	2	STRG.20467.2	1
scaffold_5	retained_intron	4754616	4754915	+	asmbl_45295	none	blat.proc3825166.chain_2142	1	STRG.5935.1,blat.proc3825166.chain_2143	2
scaffold_340	retained_intron	4207	4444	+	asmbl_41017	none	Trinity_GG_34082_c0_g2_i1	1	STRG.30296.1	1
scaffold_1	spliced_intron	18488075	18488185	-	asmbl_1117	none	STRG.1298.8	1	STRG.1298.4,STRG.1298.7,Trinity_GG_709_c0_g1_i3,blat.proc3825148.chain_1317,blat.proc3825148.chain_1318	5
scaffold_13	starts_in_intron	8798604	8798604	-	asmbl_9977	none	blat.proc3825156.chain_1055	1	STRG.16148.1,blat.proc3825156.chain_1054	2
scaffold_1	starts_in_intron	14276057	14276057	+	asmbl_2368	none	Trinity_GG_17932_c0_g1_i5,blat.proc3825164.chain_1201	2	STRG.1023.1,STRG.1023.2,Trinity_GG_17932_c0_g1_i1,Trinity_GG_17932_c0_g1_i2,Trinity_GG_17932_c0_g1_i4,blat.proc3825164.chain_1200,blat.proc3825164.chain_1202,blat.proc3825164.chain_1203	8
scaffold_12	retained_intron	6947821	6948376	-	asmbl_8550,asmbl_8551	none	blat.proc3825154.chain_3276,blat.proc3825154.chain_3278	2	STRG.14768.1,STRG.14768.2,blat.proc3825154.chain_3277	3
scaffold_24	skipped_exon	9953362	9954371	-	asmbl_33154,asmbl_33155,asmbl_33156,asmbl_33157,asmbl_33161,asmbl_33163	none	STRG.26968.1,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_271,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	7	STRG.26968.2,STRG.26968.6	2
scaffold_6	spliced_intron	8636212	8636466	-	asmbl_48576	none	STRG.7743.1,Trinity_GG_4368_c0_g1_i4,blat.proc3825152.chain_116	3	STRG.7743.2,Trinity_GG_4368_c0_g1_i3,blat.proc3825152.chain_115	3
scaffold_27	ends_in_intron	2049959	2049959	+	asmbl_36064	none	blat.proc3825178.chain_1810	1	STRG.28688.1,blat.proc3825178.chain_1809,blat.proc3825178.chain_1811	3
scaffold_9	starts_in_intron	5218107	5218107	+	asmbl_54003	none	STRG.11103.2,blat.proc3825168.chain_3559	2	STRG.11103.1	1
scaffold_9	ends_in_intron	14039598	14039598	+	asmbl_54519	none	Trinity_GG_23791_c0_g1_i1,blat.proc3825170.chain_425	2	STRG.11665.1,STRG.11665.2,STRG.11665.3,Trinity_GG_23791_c0_g1_i3,Trinity_GG_23791_c0_g1_i4,blat.proc3825170.chain_423,blat.proc3825170.chain_424	7
scaffold_25	starts_in_intron	6039639	6039639	-	asmbl_34311	none	STRG.27484.1,blat.proc3825162.chain_864	2	STRG.27484.2,blat.proc3825162.chain_865,blat.proc3825162.chain_866	3
scaffold_18	alternate_exon	1915665	1918859	-	asmbl_19668,asmbl_19669	none	STRG.21084.1,STRG.21084.2,Trinity_GG_11825_c0_g1_i1,Trinity_GG_11825_c2_g1_i1,blat.proc3825158.chain_2064,blat.proc3825158.chain_2065,blat.proc3825158.chain_2067	7	Trinity_GG_11825_c1_g1_i1,blat.proc3825158.chain_2066	2
scaffold_18	alt_acceptor	2061712	2061713	-	asmbl_19699	none	STRG.21099.2,Trinity_GG_11826_c0_g1_i1,blat.proc3825158.chain_2070	3	STRG.21099.1,Trinity_GG_11826_c0_g1_i2,blat.proc3825158.chain_2071	3
scaffold_9	alt_acceptor	15356156	15356157	+	asmbl_54554	none	STRG.11736.3	1	STRG.11736.1	1
scaffold_7	spliced_intron	18392945	18393030	-	asmbl_51468,asmbl_51470,asmbl_51475	none	STRG.9670.1,STRG.9670.2,Trinity_GG_5439_c0_g1_i1,blat.proc3825152.chain_2012,blat.proc3825152.chain_2016	5	Trinity_GG_5439_c0_g1_i9,blat.proc3825152.chain_2019	2
scaffold_1	alt_donor	4027775	4027776	-	asmbl_178	none	STRG.248.1,blat.proc3825148.chain_224	2	STRG.248.2,blat.proc3825148.chain_223	2
scaffold_5	alt_donor	9717861	9717862	+	asmbl_45637	none	STRG.6285.1,blat.proc3825166.chain_2490	2	STRG.6285.2,blat.proc3825166.chain_2491	2
scaffold_9	alternate_exon	10902562	10902597	+	asmbl_54304	none	blat.proc3825170.chain_101	1	STRG.11402.1	1
scaffold_5	alt_acceptor	18696880	18696881	-	asmbl_44852,asmbl_44853	none	STRG.6997.2,STRG.6997.3	2	STRG.6997.1	1
scaffold_7	alt_acceptor	3432229	3432230	+	asmbl_49690	none	STRG.8751.1,blat.proc3825168.chain_1232	2	STRG.8751.2	1
scaffold_22	alternate_exon	11596511	11596900	-	asmbl_29684	none	STRG.25516.5,blat.proc3825160.chain_2632	2	blat.proc3825160.chain_2633	1
scaffold_18	retained_intron	8372775	8373987	-	asmbl_20000	none	STRG.21509.1,blat.proc3825158.chain_2435	2	STRG.21509.2,STRG.21509.3	2
scaffold_15	alternate_exon	12619511	12619636	+	asmbl_15589	none	STRG.18717.1,Trinity_GG_27593_c0_g1_i1,blat.proc3825172.chain_3366	3	STRG.18717.2,Trinity_GG_27593_c1_g1_i2,Trinity_GG_27593_c1_g1_i5,blat.proc3825172.chain_3369,blat.proc3825172.chain_3370	5
scaffold_4	ends_in_intron	4095048	4095048	+	asmbl_41224,asmbl_41228	none	STRG.4315.5,Trinity_GG_19675_c0_g1_i17,blat.proc3825166.chain_708	3	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,blat.proc3825166.chain_703,blat.proc3825166.chain_704,blat.proc3825166.chain_707	7
scaffold_28	alt_donor	7720499	7720500	+	asmbl_37707	none	blat.proc3825178.chain_3018	1	STRG.29845.1,blat.proc3825178.chain_3019,blat.proc3825178.chain_3022	3
scaffold_1	skipped_exon	22371480	22372437	+	asmbl_2687,asmbl_2688	none	STRG.1491.2,STRG.1491.5	2	STRG.1491.1,STRG.1491.3,STRG.1491.4	3
scaffold_13	alternate_exon	15510290	15510435	+	asmbl_11513	none	STRG.16593.2	1	STRG.16593.3	1
scaffold_12	spliced_intron	12451819	12451938	+	asmbl_8007	none	STRG.15151.3	1	STRG.15151.1	1
scaffold_1	ends_in_intron	44436	44436	-	asmbl_4,asmbl_7	none	Trinity_GG_34_c0_g1_i2,blat.proc3825148.chain_61,blat.proc3825148.chain_62	3	STRG.11.3	1
scaffold_25	spliced_intron	6066560	6066726	-	asmbl_34317,asmbl_34318,asmbl_34319,asmbl_34320,asmbl_34324	none	STRG.27490.1,STRG.27490.2,blat.proc3825162.chain_845,blat.proc3825162.chain_846,blat.proc3825162.chain_847,blat.proc3825162.chain_849,blat.proc3825162.chain_850	7	STRG.27490.3,blat.proc3825162.chain_848	2
scaffold_10	retained_intron	4058608	4058815	-	asmbl_4251,asmbl_4253	none	STRG.12246.6,STRG.12246.7,blat.proc3825154.chain_823	3	STRG.12246.2,STRG.12246.3,blat.proc3825154.chain_824	3
scaffold_8	ends_in_intron	12340674	12340674	-	asmbl_52199	none	STRG.10410.2	1	STRG.10410.1,Trinity_GG_5766_c0_g1_i2,blat.proc3825152.chain_2604	3
scaffold_22	alt_acceptor	224379	224380	-	asmbl_29077	none	STRG.24683.5	1	STRG.24683.3	1
scaffold_3	spliced_intron	1089700	1089735	+	asmbl_39829,asmbl_39831	none	STRG.2937.1,STRG.2937.3,blat.proc3825164.chain_3168	3	STRG.2937.2	1
scaffold_16	alternate_exon	15222806	15222885	+	asmbl_16722	none	STRG.19882.3	1	STRG.19882.1,STRG.19882.2,blat.proc3825174.chain_761	3
scaffold_21	alt_acceptor	2525619	2525620	-	asmbl_27474,asmbl_27475	none	STRG.23884.2,blat.proc3825160.chain_1034	2	STRG.23884.1,blat.proc3825160.chain_1033	2
scaffold_17	retained_intron	1523950	1524129	+	asmbl_18612	none	STRG.19993.1,blat.proc3825174.chain_869	2	blat.proc3825174.chain_868	1
scaffold_15	spliced_intron	12432664	12433619	+	asmbl_15570,asmbl_15571,asmbl_15572,asmbl_15573	none	STRG.18701.1,Trinity_GG_27574_c0_g1_i7,blat.proc3825172.chain_3339,blat.proc3825172.chain_3342,blat.proc3825172.chain_3344	5	blat.proc3825172.chain_3337,blat.proc3825172.chain_3338,blat.proc3825172.chain_3340,blat.proc3825172.chain_3341,blat.proc3825172.chain_3343	5
scaffold_23	ends_in_intron	1143781	1143781	-	asmbl_30633	none	blat.proc3825160.chain_2736	1	STRG.25596.1,blat.proc3825160.chain_2731,blat.proc3825160.chain_2733,blat.proc3825160.chain_2734	4
scaffold_1	alternate_exon	22369668	22371257	+	asmbl_2690,asmbl_2691	none	STRG.1491.3,STRG.1491.4	2	STRG.1491.6	1
scaffold_18	retained_intron	6009520	6009771	+	asmbl_20659	none	blat.proc3825174.chain_2357	1	STRG.21369.1,blat.proc3825174.chain_2355,blat.proc3825174.chain_2359	3
scaffold_5	spliced_intron	10854006	10854093	+	asmbl_45699,asmbl_45701,asmbl_45702	none	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	4	blat.proc3825166.chain_2521	1
scaffold_23	ends_in_intron	1861970	1861970	+	asmbl_31364	none	blat.proc3825176.chain_2620	1	STRG.25670.1,Trinity_GG_31477_c0_g1_i2,blat.proc3825176.chain_2619	3
scaffold_25	spliced_intron	6066916	6067033	-	asmbl_34317,asmbl_34318,asmbl_34319,asmbl_34320,asmbl_34322,asmbl_34324	none	STRG.27490.1,STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_845,blat.proc3825162.chain_846,blat.proc3825162.chain_847,blat.proc3825162.chain_849,blat.proc3825162.chain_850	8	blat.proc3825162.chain_848	1
scaffold_23	ends_in_intron	8767883	8767883	+	asmbl_31777	none	blat.proc3825176.chain_3113	1	STRG.26145.1,blat.proc3825176.chain_3112	2
scaffold_1	starts_in_intron	20729332	20729332	-	asmbl_1195	none	blat.proc3825148.chain_1391	1	STRG.1416.1	1
scaffold_2	spliced_intron	885396	885480	+	asmbl_24124,asmbl_24125,asmbl_24126	none	STRG.1564.2,STRG.1564.3,blat.proc3825164.chain_1624	3	blat.proc3825164.chain_1623	1
scaffold_3	ends_in_intron	10944418	10944418	-	asmbl_39126	none	Trinity_GG_1921_c0_g1_i2,blat.proc3825148.chain_3420	2	STRG.3547.1,blat.proc3825148.chain_3417,blat.proc3825148.chain_3418,blat.proc3825148.chain_3419	4
scaffold_10	spliced_intron	7827883	7827959	-	asmbl_4562	none	STRG.12573.1,blat.proc3825154.chain_1084	2	Trinity_GG_6983_c0_g1_i1,blat.proc3825154.chain_1085	2
scaffold_10	alt_donor	4715920	4715921	-	asmbl_4307	none	STRG.12295.1,blat.proc3825154.chain_858	2	STRG.12295.2	1
scaffold_19	spliced_intron	12492922	12493022	+	asmbl_21811,asmbl_21812,asmbl_21813,asmbl_21814,asmbl_21815	none	STRG.22590.2,STRG.22590.4,STRG.22590.5,blat.proc3825174.chain_3623,blat.proc3825174.chain_3624	5	Trinity_GG_29809_c0_g1_i1,blat.proc3825174.chain_3627,blat.proc3825174.chain_3628	3
scaffold_13	alternate_exon	896155	903690	-	asmbl_9375	none	STRG.15470.2,Trinity_GG_8651_c0_g1_i6,blat.proc3825156.chain_270	3	Trinity_GG_8651_c0_g1_i8,blat.proc3825156.chain_265	2
scaffold_27	ends_in_intron	637998	637998	-	asmbl_36710	none	Trinity_GG_16002_c1_g1_i6,blat.proc3825162.chain_1843	2	STRG.28585.1,Trinity_GG_16002_c1_g1_i3,Trinity_GG_16002_c1_g1_i5,blat.proc3825162.chain_1842,blat.proc3825162.chain_1844	5
scaffold_6	alt_donor	2481734	2481735	-	asmbl_48127	none	STRG.7245.1,blat.proc3825150.chain_3360	2	STRG.7245.4,blat.proc3825150.chain_3361	2
scaffold_27	spliced_intron	3874917	3875034	+	asmbl_36229,asmbl_36231	none	blat.proc3825178.chain_2052,blat.proc3825178.chain_2053	2	blat.proc3825178.chain_2054	1
scaffold_5	retained_exon	9085213	9085337	+	asmbl_45599,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6	Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2480	2
scaffold_1	retained_intron	17975385	17975557	-	asmbl_1072	none	STRG.1265.1,Trinity_GG_619_c0_g1_i1	2	STRG.1265.2	1
scaffold_8	alt_donor	13162164	13162165	-	asmbl_52279	none	STRG.10489.1,blat.proc3825152.chain_2707	2	STRG.10489.2,blat.proc3825152.chain_2708	2
scaffold_20	alt_acceptor	394810	394811	-	asmbl_25494	none	STRG.22735.2,blat.proc3825158.chain_3557	2	STRG.22735.1,Trinity_GG_12659_c0_g1_i4,blat.proc3825158.chain_3560	3
scaffold_14	alt_acceptor	582565	582566	+	asmbl_11767,asmbl_11771	none	STRG.16740.1,STRG.16740.2,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	4	STRG.16740.3,STRG.16740.4	2
scaffold_340	spliced_intron	809	1149	+	asmbl_41010,asmbl_41011,asmbl_41012	none	STRG.30295.3,STRG.30295.4,STRG.30295.5	3	STRG.30295.2,Trinity_GG_34083_c0_g1_i3,blat.proc3825178.chain_3392	3
scaffold_24	retained_intron	10480275	10480714	+	asmbl_32568	none	blat.proc3825178.chain_206	1	STRG.27018.1,STRG.27018.3,blat.proc3825178.chain_204,blat.proc3825178.chain_205	4
scaffold_2	spliced_intron	7936735	7936885	+	asmbl_24598,asmbl_24599,asmbl_24600,asmbl_24602,asmbl_24603	none	STRG.2090.1,Trinity_GG_18487_c0_g1_i6,Trinity_GG_18487_c0_g1_i7,Trinity_GG_18487_c0_g1_i9,Trinity_GG_18487_c0_g2_i1,blat.proc3825164.chain_2246,blat.proc3825164.chain_2247,blat.proc3825164.chain_2250,blat.proc3825164.chain_2251	9	Trinity_GG_18487_c0_g1_i2,blat.proc3825164.chain_2245	2
scaffold_20	starts_in_intron	11567370	11567370	+	asmbl_27078	none	Trinity_GG_30414_c0_g2_i1,blat.proc3825176.chain_872	2	STRG.23663.2	1
scaffold_6	starts_in_intron	2479521	2479521	-	asmbl_48129	none	Trinity_GG_4048_c0_g2_i1	1	STRG.7245.1,STRG.7245.3,STRG.7245.4,blat.proc3825150.chain_3360,blat.proc3825150.chain_3361	5
scaffold_13	skipped_exon	15362462	15364730	+	asmbl_11493	none	STRG.16579.2,Trinity_GG_26428_c0_g1_i2	2	STRG.16579.1,Trinity_GG_26428_c0_g1_i1,Trinity_GG_26428_c0_g1_i3	3
scaffold_10	starts_in_intron	6077609	6077609	-	asmbl_4425,asmbl_4426,asmbl_4427,asmbl_4428,asmbl_4429,asmbl_4432	none	blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1034	6	STRG.12445.1	1
scaffold_24	spliced_intron	2065131	2065376	-	asmbl_32772	none	STRG.26435.1	1	STRG.26435.2,Trinity_GG_14777_c0_g1_i3,blat.proc3825160.chain_3557	3
scaffold_25	alternate_exon	2146346	2146490	+	asmbl_33387	none	STRG.27211.1,blat.proc3825178.chain_335	2	STRG.27211.2	1
scaffold_25	alt_donor	337596	337597	+	asmbl_33325	none	STRG.27077.2	1	STRG.27077.1,STRG.27077.3	2
scaffold_6	spliced_intron	12911385	12911667	+	asmbl_47447	none	STRG.8051.2,blat.proc3825168.chain_504	2	STRG.8051.1,Trinity_GG_21717_c0_g1_i1,Trinity_GG_21717_c0_g1_i2,blat.proc3825168.chain_502,blat.proc3825168.chain_503	5
scaffold_12	starts_in_intron	4305954	4305954	+	asmbl_7598	none	blat.proc3825170.chain_3122	1	STRG.14605.1,blat.proc3825170.chain_3123	2
scaffold_16	retained_intron	125457	125887	+	asmbl_15999	none	Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3684	2	STRG.19007.2,STRG.19007.3,Trinity_GG_27742_c0_g1_i2,blat.proc3825172.chain_3685	4
scaffold_20	alt_acceptor	1469616	1469617	-	asmbl_25571,asmbl_25572	none	STRG.22868.2,STRG.22868.4,blat.proc3825158.chain_3739	3	STRG.22868.3,blat.proc3825158.chain_3737	2
scaffold_13	spliced_intron	16515276	16515326	+	asmbl_11584	none	blat.proc3825172.chain_1423	1	STRG.16700.1,Trinity_GG_26476_c0_g1_i1	2
scaffold_9	alt_acceptor	3675784	3675785	-	asmbl_54920	none	STRG.10993.4	1	STRG.10993.5	1
scaffold_8	retained_exon	17313204	17313263	-	asmbl_52444	none	STRG.10653.4,blat.proc3825152.chain_2902	2	STRG.10653.2,blat.proc3825152.chain_2900	2
scaffold_11	starts_in_intron	17086086	17086086	-	asmbl_7249,asmbl_7251	none	STRG.14373.2,blat.proc3825154.chain_2883	2	STRG.14373.1,STRG.14373.3,STRG.14373.4,blat.proc3825154.chain_2882,blat.proc3825154.chain_2885,blat.proc3825154.chain_2886	6
scaffold_20	alt_donor	5924972	5924973	-	asmbl_25790,asmbl_25792,asmbl_25793	none	STRG.23199.3,blat.proc3825160.chain_278,blat.proc3825160.chain_279,blat.proc3825160.chain_280	4	STRG.23199.4,blat.proc3825160.chain_276	2
scaffold_4	spliced_intron	7380297	7380425	-	asmbl_42715	none	STRG.4577.2	1	STRG.4577.1,blat.proc3825150.chain_793	2
scaffold_13	retained_intron	925797	925912	-	asmbl_9389	none	blat.proc3825156.chain_331	1	STRG.15465.1,blat.proc3825156.chain_330	2
scaffold_13	spliced_intron	7192853	7192955	-	asmbl_9858,asmbl_9863,asmbl_9864,asmbl_9866	none	STRG.16016.1,STRG.16016.2,STRG.16016.3,blat.proc3825156.chain_957,blat.proc3825156.chain_958,blat.proc3825156.chain_960,blat.proc3825156.chain_961	7	STRG.16016.4,Trinity_GG_9030_c0_g1_i1,blat.proc3825156.chain_959	3
scaffold_6	starts_in_intron	5192096	5192096	+	asmbl_46916,asmbl_46919	none	Trinity_GG_21344_c0_g1_i2,blat.proc3825166.chain_3553	2	STRG.7496.1,STRG.7496.2,STRG.7496.3,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3554	7
scaffold_6	ends_in_intron	5441929	5441929	+	asmbl_46951	none	STRG.7512.2,blat.proc3825166.chain_3694	2	STRG.7512.1,Trinity_GG_21417_c0_g1_i1,blat.proc3825166.chain_3692	3
scaffold_13	starts_in_intron	7504749	7504749	-	asmbl_9887	none	STRG.16047.4,blat.proc3825156.chain_902	2	STRG.16047.1,STRG.16047.2,STRG.16047.3,blat.proc3825156.chain_899,blat.proc3825156.chain_900,blat.proc3825156.chain_901,blat.proc3825156.chain_903,blat.proc3825156.chain_905,blat.proc3825156.chain_906,blat.proc3825156.chain_908	10
scaffold_12	spliced_intron	1059560	1059598	+	asmbl_7455	none	STRG.14447.4,blat.proc3825170.chain_2948	2	STRG.14447.1,STRG.14447.2,STRG.14447.3,Trinity_GG_25255_c1_g1_i1	4
scaffold_5	retained_intron	5026994	5027082	-	asmbl_44022	none	Trinity_GG_5490_c0_g1_i1	1	STRG.5956.1,blat.proc3825150.chain_2070,blat.proc3825150.chain_2071,blat.proc3825152.chain_2116	4
scaffold_23	alt_donor	5583740	5583741	+	asmbl_31586,asmbl_31589	none	STRG.25931.1,STRG.25931.2,Trinity_GG_31582_c0_g1_i1,blat.proc3825176.chain_2802	4	STRG.25931.3,blat.proc3825176.chain_2800	2
scaffold_24	alt_acceptor	8958009	8958010	+	asmbl_32464	none	STRG.26918.2,Trinity_GG_32190_c0_g1_i2,blat.proc3825178.chain_110	3	STRG.26918.1	1
scaffold_20	spliced_intron	5845427	5845613	-	asmbl_25779	none	STRG.23185.1,blat.proc3825160.chain_256	2	STRG.23185.2,Trinity_GG_12929_c0_g1_i1,blat.proc3825160.chain_257	3
scaffold_28	retained_intron	5010558	5011216	+	asmbl_37561	none	blat.proc3825178.chain_2834	1	STRG.29651.1,blat.proc3825178.chain_2833	2
scaffold_16	alt_acceptor	9147209	9147210	+	asmbl_16468	none	STRG.19521.2	1	STRG.19521.1	1
scaffold_10	retained_intron	8898870	8899178	-	asmbl_4621	none	blat.proc3825154.chain_1268,blat.proc3825178.chain_3389	2	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	12
scaffold_11	alt_acceptor	6396019	6396020	-	asmbl_6710,asmbl_6711	none	STRG.13697.3,STRG.13697.4	2	STRG.13697.1,STRG.13697.2,Trinity_GG_7653_c0_g1_i2,Trinity_GG_7653_c0_g1_i3,blat.proc3825154.chain_2241,blat.proc3825154.chain_2242	6
scaffold_16	starts_in_intron	7241743	7241743	-	asmbl_17172	none	blat.proc3825158.chain_479	1	STRG.19399.3,STRG.19399.6	2
scaffold_27	starts_in_intron	2796533	2796533	+	asmbl_36113	none	Trinity_GG_33228_c0_g1_i5,blat.proc3825178.chain_1915	2	STRG.28760.1,blat.proc3825178.chain_1916,blat.proc3825178.chain_1917	3
scaffold_27	alternate_exon	6195097	6195472	+	asmbl_36385	none	STRG.29014.2	1	STRG.29014.1,STRG.29014.4	2
scaffold_15	spliced_intron	1500635	1500789	-	asmbl_13952,asmbl_13954	none	Trinity_GG_10109_c0_g1_i15,blat.proc3825156.chain_2803,blat.proc3825156.chain_2807	3	blat.proc3825156.chain_2801	1
scaffold_2	alternate_exon	14203487	14204169	-	asmbl_23576	none	STRG.2414.3	1	STRG.2414.1,STRG.2414.4,blat.proc3825148.chain_2405,blat.proc3825148.chain_2407	4
scaffold_6	starts_in_intron	18716637	18716637	+	asmbl_47848	none	Trinity_GG_21982_c0_g1_i4,blat.proc3825168.chain_946	2	STRG.8538.1,STRG.8538.2,Trinity_GG_21982_c0_g1_i3,blat.proc3825168.chain_945	4
scaffold_25	retained_exon	7803319	7803458	-	asmbl_34406,asmbl_34408	none	STRG.27602.1,blat.proc3825162.chain_947,blat.proc3825162.chain_948	3	blat.proc3825162.chain_946	1
scaffold_1	starts_in_intron	13928703	13928703	-	asmbl_863	none	blat.proc3825148.chain_960	1	STRG.1001.1,STRG.1001.2	2
scaffold_14	alternate_exon	1158672	1158755	+	asmbl_11812	none	STRG.16773.2	1	STRG.16773.1,Trinity_GG_26509_c0_g1_i1,blat.proc3825172.chain_1474	3
scaffold_14	alt_acceptor	1590384	1590385	-	asmbl_12894,asmbl_12895,asmbl_12898,asmbl_12899	none	STRG.16799.1,STRG.16799.2,STRG.16799.4,blat.proc3825156.chain_1564,blat.proc3825156.chain_1565,blat.proc3825156.chain_1566	6	STRG.16799.3	1
scaffold_5	spliced_intron	18758399	18758711	-	asmbl_44874	none	STRG.7008.1,blat.proc3825150.chain_3109	2	Trinity_GG_3898_c0_g1_i3,blat.proc3825150.chain_3108	2
scaffold_21	starts_in_intron	2656471	2656471	-	asmbl_27489	none	blat.proc3825160.chain_983	1	STRG.23906.1,STRG.23906.2,Trinity_GG_13292_c0_g1_i3,blat.proc3825160.chain_977,blat.proc3825160.chain_981	5
scaffold_1	retained_intron	2740187	2740762	-	asmbl_123,asmbl_124,asmbl_125	none	STRG.176.1,STRG.176.2,blat.proc3825148.chain_182,blat.proc3825148.chain_183,blat.proc3825148.chain_184	5	STRG.176.3	1
scaffold_22	alternate_exon	479872	479900	+	asmbl_29853	none	Trinity_GG_30962_c0_g1_i1,blat.proc3825176.chain_1813	2	STRG.24692.1,Trinity_GG_30962_c0_g1_i2,blat.proc3825176.chain_1814	3
scaffold_7	skipped_exon	15566218	15569133	-	asmbl_51385	none	blat.proc3825152.chain_1852	1	STRG.9555.1,blat.proc3825152.chain_1851	2
scaffold_1	starts_in_intron	14360777	14360777	-	asmbl_903	none	blat.proc3825148.chain_1033	1	STRG.1037.1,STRG.1037.2,STRG.1037.3,blat.proc3825148.chain_1031,blat.proc3825148.chain_1032,blat.proc3825148.chain_1034,blat.proc3825148.chain_1035	7
scaffold_20	spliced_intron	5922620	5922744	-	asmbl_25790,asmbl_25791	none	STRG.23199.3,STRG.23199.4,blat.proc3825160.chain_272	3	STRG.23199.1,STRG.23199.2,Trinity_GG_12939_c0_g1_i1,blat.proc3825160.chain_271	4
scaffold_27	ends_in_intron	3061930	3061930	+	asmbl_36181	none	blat.proc3825178.chain_1819	1	STRG.28792.1,STRG.28792.2,blat.proc3825178.chain_1820,blat.proc3825178.chain_1821,blat.proc3825178.chain_1823	5
scaffold_2	starts_in_intron	4144533	4144533	+	asmbl_24340	none	Trinity_GG_18351_c0_g1_i1	1	STRG.1855.1	1
scaffold_26	alternate_exon	5843571	5844156	+	asmbl_35044	none	STRG.28287.1,Trinity_GG_32891_c1_g1_i1,blat.proc3825178.chain_1286	3	STRG.28286.1,Trinity_GG_32891_c0_g1_i1,blat.proc3825178.chain_1285	3
scaffold_24	alt_acceptor	3656168	3656169	+	asmbl_32149,asmbl_32151,asmbl_32152	none	STRG.26550.2,STRG.26550.5,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463,blat.proc3825176.chain_3466,blat.proc3825176.chain_3467	6	STRG.26550.1,STRG.26550.3,STRG.26550.6,Trinity_GG_31970_c0_g1_i5,blat.proc3825176.chain_3465,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469,blat.proc3825176.chain_3470	8
scaffold_23	spliced_intron	2305426	2306387	+	asmbl_31385	none	STRG.25708.2,Trinity_GG_31502_c0_g1_i5,blat.proc3825176.chain_2662	3	Trinity_GG_31502_c0_g1_i6,blat.proc3825176.chain_2664	2
scaffold_2	alt_donor	8055584	8055585	-	asmbl_23303	none	STRG.2094.2,blat.proc3825148.chain_2119	2	STRG.2094.1,blat.proc3825148.chain_2117,blat.proc3825148.chain_2121	3
scaffold_4	alt_acceptor	17419072	17419073	-	asmbl_43263	none	STRG.5328.1	1	STRG.5328.2,STRG.5328.4	2
scaffold_22	retained_intron	504668	504905	-	asmbl_29091	none	STRG.24702.2,Trinity_GG_13790_c0_g1_i11,blat.proc3825160.chain_1868	3	STRG.24702.1,STRG.24702.3,STRG.24702.4,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i2,Trinity_GG_13790_c0_g1_i4,blat.proc3825160.chain_1862,blat.proc3825160.chain_1865,blat.proc3825160.chain_1867,blat.proc3825160.chain_1869	11
scaffold_12	ends_in_intron	5081903	5081903	+	asmbl_7642	none	blat.proc3825170.chain_3175	1	STRG.14680.1,blat.proc3825170.chain_3176,blat.proc3825170.chain_3178	3
scaffold_12	retained_exon	1056071	1056127	+	asmbl_7456	none	STRG.14447.3	1	STRG.14447.1,STRG.14447.4,blat.proc3825170.chain_2948	3
scaffold_7	retained_exon	17339177	17339246	-	asmbl_51425,asmbl_51426	none	STRG.9613.2,STRG.9613.3	2	STRG.9613.4	1
scaffold_25	alternate_exon	434521	434541	+	asmbl_33333	none	Trinity_GG_32275_c0_g1_i2,blat.proc3825178.chain_281	2	STRG.27088.1,blat.proc3825178.chain_280	2
scaffold_24	spliced_intron	31492	31533	+	asmbl_32002	none	STRG.26314.2	1	STRG.26314.1	1
scaffold_6	spliced_intron	4538209	4538366	-	asmbl_48335	none	STRG.7434.3	1	STRG.7434.4,STRG.7434.5,Trinity_GG_4189_c1_g2_i2	3
scaffold_1	alt_acceptor	19386822	19386823	+	asmbl_2595	none	STRG.1350.2	1	STRG.1350.1,blat.proc3825164.chain_1424	2
scaffold_28	alt_acceptor	7254671	7254672	+	asmbl_37655,asmbl_37656	none	STRG.29793.1,STRG.29793.2,Trinity_GG_33812_c0_g1_i1,Trinity_GG_33812_c0_g1_i2,blat.proc3825178.chain_2945,blat.proc3825178.chain_2947	6	STRG.29793.3,STRG.29793.4	2
scaffold_18	retained_intron	1860254	1860365	+	asmbl_20385	none	blat.proc3825174.chain_1972	1	STRG.21073.1,STRG.21073.2,blat.proc3825174.chain_1971	3
scaffold_19	alt_acceptor	12392010	12392011	-	asmbl_22480	none	STRG.22570.3,blat.proc3825158.chain_3327	2	STRG.22570.1,STRG.22570.2,blat.proc3825158.chain_3326,blat.proc3825158.chain_3328,blat.proc3825158.chain_3329,blat.proc3825158.chain_3330	6
scaffold_7	alternate_exon	12369558	12369685	+	asmbl_50254	none	blat.proc3825168.chain_1879	1	STRG.9336.1,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878	3
scaffold_10	alternate_exon	10427816	10428296	-	asmbl_4733,asmbl_4734	none	STRG.12731.2,Trinity_GG_7118_c0_g1_i2,blat.proc3825154.chain_1335	3	STRG.12731.1,STRG.12731.3,Trinity_GG_7118_c0_g1_i3,blat.proc3825154.chain_1336,blat.proc3825154.chain_1337	5
scaffold_13	alt_acceptor	15672505	15672506	+	asmbl_11530	none	STRG.16612.5	1	STRG.16612.1,STRG.16612.2,STRG.16612.3,STRG.16612.4,STRG.16612.6	5
scaffold_13	starts_in_intron	11721780	11721780	+	asmbl_11304	none	Trinity_GG_26274_c0_g1_i2,blat.proc3825172.chain_1100	2	STRG.16312.1,blat.proc3825172.chain_1099	2
scaffold_340	alternate_exon	5571	5879	+	asmbl_41016	none	Trinity_GG_34082_c0_g1_i1,blat.proc3825178.chain_3388	2	STRG.30296.1	1
scaffold_27	skipped_exon	626799	628881	-	asmbl_36703	none	STRG.28583.3,blat.proc3825162.chain_1825	2	STRG.28583.1,STRG.28583.2,STRG.28583.4,blat.proc3825162.chain_1824,blat.proc3825162.chain_1827	5
scaffold_16	alternate_exon	11335261	11335407	+	asmbl_16579	none	STRG.19664.2	1	STRG.19664.1,blat.proc3825174.chain_606	2
scaffold_5	alt_acceptor	9328140	9328141	-	asmbl_44271	none	blat.proc3825150.chain_2374	1	STRG.6260.2	1
scaffold_10	retained_intron	6871848	6872357	-	asmbl_4510,asmbl_4512	none	blat.proc3825154.chain_1143,blat.proc3825154.chain_1147	2	STRG.12511.1,blat.proc3825154.chain_1139,blat.proc3825154.chain_1142,blat.proc3825154.chain_1144,blat.proc3825154.chain_1145	5
scaffold_22	retained_exon	10684835	10685364	-	asmbl_29615,asmbl_29616,asmbl_29618	none	STRG.25415.1,STRG.25415.2,STRG.25415.3	3	blat.proc3825160.chain_2610	1
scaffold_19	retained_exon	6407888	6407947	-	asmbl_22215	none	STRG.22169.3,blat.proc3825158.chain_3005	2	blat.proc3825158.chain_3003	1
scaffold_15	retained_intron	4983626	4984030	-	asmbl_14181,asmbl_14184,asmbl_14185	none	STRG.18211.5,blat.proc3825156.chain_3069,blat.proc3825156.chain_3070	3	STRG.18211.4	1
scaffold_2	alt_donor	943129	943130	+	asmbl_24163	none	STRG.1574.2	1	STRG.1574.1,Trinity_GG_18238_c0_g2_i1,blat.proc3825164.chain_1775	3
scaffold_1	retained_intron	854276	854519	+	asmbl_1427	none	Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142	2	STRG.43.1,STRG.43.2,STRG.43.3,STRG.43.4	4
scaffold_1	alt_donor	14282843	14282844	-	asmbl_885	none	STRG.1026.1,Trinity_GG_517_c0_g1_i1,blat.proc3825148.chain_978	3	STRG.1026.2,Trinity_GG_517_c0_g1_i2,blat.proc3825148.chain_979	3
scaffold_14	ends_in_intron	12628566	12628566	-	asmbl_13588	none	STRG.17582.5	1	STRG.17582.1,STRG.17582.2,STRG.17582.3,blat.proc3825156.chain_2416,blat.proc3825156.chain_2417,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2420,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	11
scaffold_7	retained_exon	2485107	2485244	+	asmbl_49646	none	STRG.8684.1	1	STRG.8684.2,blat.proc3825168.chain_1193,blat.proc3825168.chain_1196	3
scaffold_8	skipped_exon	2851215	2851882	-	asmbl_51718	none	STRG.9813.2,blat.proc3825152.chain_2093	2	STRG.9813.1,blat.proc3825152.chain_2092	2
scaffold_22	alt_acceptor	4583192	4583193	+	asmbl_30032	none	STRG.24891.1,blat.proc3825176.chain_1996	2	STRG.24891.2	1
scaffold_21	alt_acceptor	11261503	11261504	-	asmbl_28107	none	STRG.24600.1,Trinity_GG_13755_c0_g1_i5,blat.proc3825160.chain_1804	3	Trinity_GG_13755_c0_g1_i3,Trinity_GG_13755_c0_g1_i4,blat.proc3825160.chain_1802,blat.proc3825160.chain_1803	4
scaffold_2	starts_in_intron	15286341	15286341	+	asmbl_25022	none	Trinity_GG_18717_c0_g1_i3,blat.proc3825164.chain_2746	2	STRG.2481.1,STRG.2481.2,blat.proc3825164.chain_2745	3
scaffold_7	starts_in_intron	8562051	8562051	-	asmbl_51015	none	STRG.9087.1,blat.proc3825152.chain_1482	2	STRG.9087.2	1
scaffold_6	ends_in_intron	1750690	1750690	-	asmbl_48118,asmbl_48121,asmbl_48122	none	STRG.7232.6,STRG.7232.7,blat.proc3825150.chain_3308,blat.proc3825150.chain_3314	4	STRG.7232.1,STRG.7232.3,STRG.7232.4,STRG.7232.5,blat.proc3825150.chain_3309,blat.proc3825150.chain_3311,blat.proc3825150.chain_3312,blat.proc3825150.chain_3315	8
scaffold_8	alt_donor	8172761	8172762	+	asmbl_53004	none	STRG.10103.2	1	STRG.10103.1	1
scaffold_20	spliced_intron	8292472	8293196	+	asmbl_26757,asmbl_26759,asmbl_26760,asmbl_26761	none	STRG.23374.2,STRG.23374.3,blat.proc3825176.chain_517,blat.proc3825176.chain_518,blat.proc3825176.chain_519	5	STRG.23374.1,STRG.23374.4,Trinity_GG_30200_c0_g1_i3,blat.proc3825176.chain_520	4
scaffold_25	ends_in_intron	801758	801758	-	asmbl_34000	none	Trinity_GG_15207_c1_g1_i2,blat.proc3825162.chain_512	2	STRG.27136.1,STRG.27136.3,STRG.27136.4	3
scaffold_27	retained_exon	382928	383039	-	asmbl_36683	none	STRG.28567.3,blat.proc3825162.chain_1735	2	STRG.28567.1,blat.proc3825162.chain_1731	2
scaffold_21	ends_in_intron	8005863	8005863	+	asmbl_28779	none	blat.proc3825176.chain_1559	1	STRG.24337.1,STRG.24337.2,STRG.24337.3,blat.proc3825176.chain_1553,blat.proc3825176.chain_1555,blat.proc3825176.chain_1557	6
scaffold_9	spliced_intron	9596820	9596951	-	asmbl_55210	none	STRG.11329.3	1	STRG.11329.1,STRG.11329.2,blat.proc3825152.chain_3513,blat.proc3825152.chain_3514	4
scaffold_19	starts_in_intron	13012134	13012134	-	asmbl_22579,asmbl_22583	none	STRG.22624.2,blat.proc3825158.chain_3456	2	STRG.22624.1,blat.proc3825158.chain_3455	2
scaffold_1	retained_intron	14320593	14320863	+	asmbl_2380,asmbl_2383	none	STRG.1027.2,blat.proc3825164.chain_1224,blat.proc3825164.chain_1226	3	blat.proc3825164.chain_1225	1
scaffold_6	spliced_intron	12479611	12479961	+	asmbl_47397,asmbl_47398,asmbl_47402	none	STRG.8006.2,STRG.8006.3,blat.proc3825168.chain_474,blat.proc3825168.chain_475	4	STRG.8006.1,blat.proc3825168.chain_473,blat.proc3825168.chain_477	3
scaffold_2	spliced_intron	15700571	15700762	+	asmbl_25072,asmbl_25073,asmbl_25074	none	STRG.2526.1,STRG.2526.2,blat.proc3825164.chain_2753,blat.proc3825164.chain_2755	4	Trinity_GG_18721_c0_g1_i2,blat.proc3825164.chain_2756	2
scaffold_5	ends_in_intron	15123409	15123409	-	asmbl_44649	none	Trinity_GG_3764_c0_g1_i2,blat.proc3825150.chain_2895	2	STRG.6705.1,blat.proc3825150.chain_2896	2
scaffold_25	alt_acceptor	443577	443578	+	asmbl_33335	none	STRG.27092.2	1	STRG.27092.1	1
scaffold_6	ends_in_intron	2480320	2480320	-	asmbl_48132	none	STRG.7245.5	1	STRG.7245.1,STRG.7245.3,STRG.7245.4,blat.proc3825150.chain_3360,blat.proc3825150.chain_3361	5
scaffold_2	spliced_intron	15453799	15453902	+	asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044	none	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811,blat.proc3825164.chain_2812	9	blat.proc3825164.chain_2805,blat.proc3825164.chain_2809	2
scaffold_1	ends_in_intron	16005184	16005184	-	asmbl_970	none	Trinity_GG_593_c0_g1_i1,blat.proc3825148.chain_1143	2	STRG.1125.1,blat.proc3825148.chain_1144	2
scaffold_11	alt_donor	12410296	12410297	-	asmbl_7088	none	STRG.14158.2	1	STRG.14158.3,blat.proc3825154.chain_2693	2
scaffold_9	skipped_exon	6866921	6867246	-	asmbl_55085	none	blat.proc3825152.chain_3343	1	STRG.11198.1,Trinity_GG_6158_c0_g1_i5,blat.proc3825152.chain_3340,blat.proc3825152.chain_3341	4
scaffold_13	retained_exon	11615375	11615516	+	asmbl_11301	none	STRG.16308.1,blat.proc3825172.chain_1103	2	STRG.16308.2,blat.proc3825172.chain_1102	2
scaffold_5	spliced_intron	15521839	15522081	-	asmbl_44683,asmbl_44687	none	STRG.6745.2,blat.proc3825150.chain_2943	2	STRG.6745.1,blat.proc3825150.chain_2945	2
scaffold_21	spliced_intron	6190737	6191794	+	asmbl_28621	none	STRG.24151.2,blat.proc3825176.chain_1351	2	STRG.24151.1,Trinity_GG_30691_c0_g1_i3,blat.proc3825176.chain_1349,blat.proc3825176.chain_1350	4
scaffold_3	retained_intron	4889563	4889668	+	asmbl_40037	none	Trinity_GG_19105_c1_g1_i6,blat.proc3825164.chain_3436	2	STRG.3183.4,blat.proc3825164.chain_3433	2
scaffold_2	alt_donor	8874086	8874087	+	asmbl_24653,asmbl_24655,asmbl_24656,asmbl_24657	none	STRG.2139.1,STRG.2139.3,STRG.2139.4,blat.proc3825164.chain_2328,blat.proc3825164.chain_2329,blat.proc3825164.chain_2330	6	STRG.2139.2,blat.proc3825164.chain_2331	2
scaffold_7	spliced_intron	8507767	8510079	+	asmbl_50001	none	STRG.9078.1,blat.proc3825168.chain_1604	2	STRG.9078.2,blat.proc3825168.chain_1605	2
scaffold_4	skipped_exon	4096133	4096603	+	asmbl_41227	none	blat.proc3825166.chain_709	1	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,blat.proc3825166.chain_703,blat.proc3825166.chain_704,blat.proc3825166.chain_705,blat.proc3825166.chain_707	8
scaffold_1	starts_in_intron	8632646	8632646	-	asmbl_461	none	blat.proc3825148.chain_547	1	STRG.571.1,STRG.571.2,Trinity_GG_304_c0_g1_i5,blat.proc3825148.chain_545,blat.proc3825148.chain_546	5
scaffold_8	alt_donor	9126268	9126269	-	asmbl_52009,asmbl_52010,asmbl_52011	none	STRG.10172.2,STRG.10172.4,blat.proc3825152.chain_2387	3	STRG.10172.1,STRG.10172.3,blat.proc3825152.chain_2389	3
scaffold_8	starts_in_intron	6309079	6309079	+	asmbl_52960,asmbl_52964	none	Trinity_GG_22907_c0_g1_i9,blat.proc3825168.chain_2624,blat.proc3825168.chain_2627	3	STRG.10033.1,blat.proc3825168.chain_2626,blat.proc3825168.chain_2629	3
scaffold_28	ends_in_intron	555927	555927	+	asmbl_37289	none	Trinity_GG_33533_c0_g1_i3,blat.proc3825178.chain_2465	2	STRG.29275.1,Trinity_GG_33533_c0_g1_i2,Trinity_GG_33533_c0_g1_i4,blat.proc3825178.chain_2463,blat.proc3825178.chain_2464	5
scaffold_17	alternate_exon	4640622	4640737	-	asmbl_17872	none	STRG.20196.2,blat.proc3825158.chain_1231	2	blat.proc3825158.chain_1232	1
scaffold_14	retained_intron	10410634	10411783	-	asmbl_13420,asmbl_13421	none	STRG.17395.1,Trinity_GG_9752_c0_g1_i1,Trinity_GG_9752_c0_g1_i2,blat.proc3825156.chain_2217	4	STRG.17395.2	1
scaffold_14	alt_donor	7495217	7495218	+	asmbl_12170	none	STRG.17193.3	1	STRG.17193.1,blat.proc3825172.chain_1881	2
scaffold_4	spliced_intron	4414707	4415344	+	asmbl_41244,asmbl_41245,asmbl_41249,asmbl_41259	none	STRG.4349.2,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_852	7	blat.proc3825166.chain_847,blat.proc3825166.chain_854,blat.proc3825166.chain_855	3
scaffold_8	skipped_exon	13143912	13145374	-	asmbl_52275,asmbl_52278	none	blat.proc3825152.chain_2724,blat.proc3825152.chain_2727	2	blat.proc3825152.chain_2725,blat.proc3825152.chain_2726	2
scaffold_2	spliced_intron	7782195	7782467	+	asmbl_24570,asmbl_24571,asmbl_24572,asmbl_24573	none	STRG.2075.1,STRG.2075.2,STRG.2075.3,STRG.2075.4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2229,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236,blat.proc3825164.chain_2237	9	blat.proc3825164.chain_2228	1
scaffold_8	spliced_intron	9467271	9467486	-	asmbl_52035,asmbl_52036,asmbl_52038,asmbl_52039	none	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5	blat.proc3825152.chain_2500	1
scaffold_11	retained_intron	8078462	8078553	-	asmbl_6831	none	Trinity_GG_7709_c0_g1_i6,blat.proc3825154.chain_2329	2	STRG.13815.1,STRG.13815.2,STRG.13815.3,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i8,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2326,blat.proc3825154.chain_2328,blat.proc3825154.chain_2330,blat.proc3825154.chain_2332,blat.proc3825154.chain_2333	15
scaffold_11	starts_in_intron	15700552	15700552	+	asmbl_6125	none	Trinity_GG_25193_c0_g1_i1,blat.proc3825170.chain_2831	2	STRG.14310.1,Trinity_GG_25193_c0_g1_i2,blat.proc3825170.chain_2832	3
scaffold_6	spliced_intron	18784543	18784568	-	asmbl_49282	none	STRG.8554.2	1	STRG.8554.1,Trinity_GG_4892_c0_g1_i1,blat.proc3825152.chain_1015,blat.proc3825152.chain_989	4
scaffold_8	spliced_intron	7804635	7804749	-	asmbl_51924,asmbl_51925,asmbl_51926,asmbl_51927,asmbl_51928	none	STRG.10100.1,blat.proc3825152.chain_2313,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316,blat.proc3825152.chain_2318	6	blat.proc3825152.chain_2317	1
scaffold_20	ends_in_intron	11482674	11482674	+	asmbl_27051,asmbl_27054,asmbl_27059	none	STRG.23653.2,STRG.23653.3,Trinity_GG_30405_c0_g1_i2,Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_846,blat.proc3825176.chain_847	6	STRG.23653.1,Trinity_GG_30405_c0_g1_i1,blat.proc3825176.chain_845	3
scaffold_5	retained_intron	12958540	12958648	-	asmbl_44504	none	STRG.6527.1	1	STRG.6527.2	1
scaffold_16	spliced_intron	10448911	10449544	+	asmbl_16534,asmbl_16539	none	STRG.19614.1,Trinity_GG_28027_c0_g1_i1,blat.proc3825174.chain_486,blat.proc3825174.chain_489	4	STRG.19614.3,Trinity_GG_28027_c0_g1_i3,blat.proc3825174.chain_485,blat.proc3825174.chain_488	4
scaffold_8	skipped_exon	9166127	9167025	-	asmbl_52018,asmbl_52020	none	STRG.10185.3,STRG.10185.4	2	STRG.10185.1,STRG.10185.2,blat.proc3825152.chain_2350	3
scaffold_1	spliced_intron	4619268	4619989	+	asmbl_1683	none	STRG.295.3	1	STRG.295.1,STRG.295.2,STRG.295.4,blat.proc3825164.chain_449	4
scaffold_13	retained_intron	13570331	13570402	+	asmbl_11395	none	STRG.16416.1,Trinity_GG_26347_c0_g1_i1	2	blat.proc3825172.chain_1207	1
scaffold_1	alternate_exon	11745463	11745890	+	asmbl_2143	none	blat.proc3825164.chain_971	1	STRG.789.2,blat.proc3825164.chain_970	2
scaffold_1	starts_in_intron	16714476	16714476	-	asmbl_1013	none	Trinity_GG_569_c0_g2_i1,blat.proc3825148.chain_1085	2	STRG.1177.1,STRG.1177.2,STRG.1177.3,STRG.1177.4,blat.proc3825148.chain_1083,blat.proc3825148.chain_1084	6
scaffold_20	spliced_intron	12095031	12095381	-	asmbl_26221	none	STRG.23707.3,blat.proc3825160.chain_787	2	STRG.23707.2,blat.proc3825160.chain_788	2
scaffold_23	spliced_intron	2038659	2038870	+	asmbl_31373,asmbl_31374	none	STRG.25686.1,blat.proc3825176.chain_2601,blat.proc3825176.chain_2602	3	blat.proc3825176.chain_2603	1
scaffold_18	spliced_intron	2149299	2149645	-	asmbl_19710	none	STRG.21114.3	1	STRG.21114.1,STRG.21114.2,Trinity_GG_11834_c0_g1_i1,blat.proc3825158.chain_2087,blat.proc3825158.chain_2088	5
scaffold_21	starts_in_intron	10890537	10890537	+	asmbl_28894	none	STRG.24565.2,blat.proc3825176.chain_1682	2	STRG.24565.1,blat.proc3825176.chain_1683	2
scaffold_24	alt_acceptor	6833622	6833623	+	asmbl_32349	none	Trinity_GG_32116_c2_g1_i1,blat.proc3825176.chain_3730,blat.proc3825176.chain_3736	3	STRG.26736.2,blat.proc3825176.chain_3732,blat.proc3825176.chain_3734	3
scaffold_9	ends_in_intron	17710018	17710018	-	asmbl_55672	none	Trinity_GG_6565_c0_g1_i1,blat.proc3825154.chain_350	2	STRG.11852.1	1
scaffold_10	alternate_exon	3315709	3315737	-	asmbl_4185	none	STRG.12164.1	1	STRG.12164.2,blat.proc3825154.chain_694	2
scaffold_15	alternate_exon	3403060	3403316	-	asmbl_14098,asmbl_14100	none	STRG.18121.3,blat.proc3825156.chain_2976	2	STRG.18121.1,STRG.18121.4,blat.proc3825156.chain_2975	3
scaffold_20	starts_in_intron	10469394	10469394	-	asmbl_26101,asmbl_26103	none	STRG.23584.2,blat.proc3825160.chain_639	2	STRG.23584.1,blat.proc3825160.chain_640,blat.proc3825160.chain_641	3
scaffold_7	spliced_intron	12437984	12438059	+	asmbl_50264,asmbl_50265	none	STRG.9343.1,STRG.9343.2,blat.proc3825168.chain_1883	3	blat.proc3825168.chain_1882	1
scaffold_15	retained_intron	15409993	15410226	+	asmbl_15771	none	STRG.18930.4,blat.proc3825172.chain_3591	2	STRG.18930.1,blat.proc3825172.chain_3588	2
scaffold_23	alt_donor	3237238	3237239	+	asmbl_31429	none	STRG.25761.3,blat.proc3825176.chain_2714	2	STRG.25761.1,STRG.25761.2,blat.proc3825176.chain_2713	3
scaffold_26	alternate_exon	4819340	4819559	+	asmbl_34930,asmbl_34931	none	STRG.28202.2,blat.proc3825178.chain_1221	2	STRG.28202.1,blat.proc3825178.chain_1219,blat.proc3825178.chain_1220,blat.proc3825178.chain_1222	4
scaffold_17	starts_in_intron	10137998	10137998	+	asmbl_19188	none	Trinity_GG_28615_c0_g1_i3,blat.proc3825174.chain_1523	2	STRG.20633.1,blat.proc3825174.chain_1521,blat.proc3825174.chain_1522	3
scaffold_12	spliced_intron	9506497	9506614	+	asmbl_7865	none	STRG.14931.1,blat.proc3825170.chain_3432	2	blat.proc3825170.chain_3433	1
scaffold_18	retained_intron	372033	372122	-	asmbl_19581	none	blat.proc3825158.chain_1985	1	STRG.20990.1,blat.proc3825158.chain_1986,blat.proc3825158.chain_1989,blat.proc3825158.chain_1990	4
scaffold_14	spliced_intron	11944578	11944701	+	asmbl_12408	none	STRG.17536.1,Trinity_GG_26949_c0_g1_i1,blat.proc3825172.chain_2263	3	Trinity_GG_26949_c0_g1_i3,blat.proc3825172.chain_2262	2
scaffold_9	alt_acceptor	7780594	7780595	+	asmbl_54133,asmbl_54135	none	STRG.11230.1,blat.proc3825170.chain_73	2	blat.proc3825170.chain_70,blat.proc3825170.chain_71,blat.proc3825170.chain_77	3
scaffold_18	retained_exon	3917889	3918211	-	asmbl_19786	none	STRG.21203.3	1	STRG.21203.5	1
scaffold_26	alternate_exon	5980626	5983272	+	asmbl_35062	none	Trinity_GG_32976_c0_g1_i4,blat.proc3825178.chain_1433	2	STRG.28312.2	1
scaffold_24	starts_in_intron	7613801	7613801	-	asmbl_33038	none	Trinity_GG_14990_c0_g1_i1,blat.proc3825162.chain_157	2	STRG.26792.1,blat.proc3825162.chain_156	2
scaffold_3	spliced_intron	16006545	16006633	-	asmbl_39467	none	STRG.3875.1,blat.proc3825148.chain_3717	2	blat.proc3825148.chain_3716	1
scaffold_7	ends_in_intron	10269213	10269213	-	asmbl_51114	none	Trinity_GG_5196_c1_g1_i1,blat.proc3825152.chain_1584	2	STRG.9203.1,STRG.9203.3,blat.proc3825152.chain_1581,blat.proc3825152.chain_1582	4
scaffold_11	starts_in_intron	17374508	17374508	+	asmbl_6221,asmbl_6225	none	Trinity_GG_25216_c0_g1_i7,blat.proc3825170.chain_2879,blat.proc3825170.chain_2881	3	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	4
scaffold_26	alt_acceptor	4690499	4690500	-	asmbl_35585,asmbl_35586,asmbl_35588	none	STRG.28194.1,STRG.28194.3,blat.proc3825162.chain_1410,blat.proc3825162.chain_1412	4	STRG.28194.2	1
scaffold_27	retained_intron	358421	358649	-	asmbl_36678	none	Trinity_GG_15982_c0_g1_i1,blat.proc3825162.chain_1795	2	STRG.28564.1,Trinity_GG_15982_c0_g1_i2,blat.proc3825162.chain_1796	3
scaffold_2	alternate_exon	14018816	14018962	+	asmbl_24868,asmbl_24869	none	STRG.2398.1,Trinity_GG_18647_c0_g1_i1,Trinity_GG_18647_c0_g1_i3,blat.proc3825164.chain_2576,blat.proc3825164.chain_2577	5	STRG.2398.2,blat.proc3825164.chain_2574	2
scaffold_12	alt_donor	135073	135074	+	asmbl_7438,asmbl_7439	none	STRG.14431.2,STRG.14431.3	2	blat.proc3825170.chain_2984,blat.proc3825170.chain_2985	2
scaffold_17	skipped_exon	4004287	4005564	+	asmbl_18762	none	STRG.20163.1	1	STRG.20163.2,blat.proc3825174.chain_1054	2
scaffold_22	starts_in_intron	11232295	11232295	+	asmbl_30373	none	Trinity_GG_31365_c0_g1_i1	1	STRG.25456.1	1
scaffold_25	retained_intron	7905410	7905469	-	asmbl_34416	none	STRG.27617.1	1	blat.proc3825162.chain_920	1
scaffold_4	alternate_exon	8622023	8622064	-	asmbl_42780	none	STRG.4680.1,blat.proc3825150.chain_900,blat.proc3825150.chain_901	3	blat.proc3825150.chain_899	1
scaffold_13	alt_donor	16048875	16048876	+	asmbl_11546,asmbl_11549	none	STRG.16642.2,blat.proc3825172.chain_1438	2	STRG.16642.1	1
scaffold_12	retained_exon	7222272	7222306	+	asmbl_7726	none	STRG.14792.1,blat.proc3825170.chain_3254	2	STRG.14792.2,blat.proc3825170.chain_3256	2
scaffold_1150	skipped_exon	1346	2564	+	asmbl_7413	none	STRG.30556.1,blat.proc3825178.chain_3564	2	STRG.30556.2	1
scaffold_16	ends_in_intron	6194608	6194608	+	asmbl_16296	none	blat.proc3825174.chain_262	1	STRG.19370.1,STRG.19370.2,blat.proc3825174.chain_258,blat.proc3825174.chain_259,blat.proc3825174.chain_260,blat.proc3825174.chain_261	6
scaffold_18	alternate_exon	7174485	7174633	-	asmbl_19927	none	STRG.21417.1,Trinity_GG_11987_c0_g1_i3,blat.proc3825158.chain_2333	3	STRG.21417.2,STRG.21417.3,Trinity_GG_11987_c0_g1_i5,blat.proc3825158.chain_2335	4
scaffold_9	retained_intron	11843488	11843598	-	asmbl_55329,asmbl_55330,asmbl_55332	none	blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663	3	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660,blat.proc3825152.chain_3664	6
scaffold_21	spliced_intron	730676	730999	+	asmbl_28294	none	STRG.23764.4	1	STRG.23764.3,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_971	3
scaffold_24	alt_acceptor	7173012	7173013	-	asmbl_33015	none	STRG.26767.1	1	STRG.26767.2,blat.proc3825162.chain_74,blat.proc3825162.chain_76	3
scaffold_8	alt_acceptor	9155580	9155581	-	asmbl_52015	none	Trinity_GG_5678_c0_g1_i2,blat.proc3825152.chain_2441	2	STRG.10176.1,blat.proc3825152.chain_2440	2
scaffold_6	spliced_intron	8174054	8174789	-	asmbl_48537,asmbl_48538,asmbl_48542,asmbl_48544,asmbl_48545	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_91,blat.proc3825152.chain_93	6	Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_92,blat.proc3825152.chain_95	3
scaffold_20	alt_acceptor	9543126	9543127	+	asmbl_26865	none	STRG.23491.1,Trinity_GG_30230_c0_g1_i1,blat.proc3825176.chain_563	3	STRG.23491.2	1
scaffold_4	alt_acceptor	8182949	8182950	-	asmbl_42758	none	STRG.4638.1,blat.proc3825150.chain_862	2	STRG.4638.2,blat.proc3825150.chain_863	2
scaffold_3	retained_exon	10628901	10629296	+	asmbl_40280	none	blat.proc3825164.chain_3688	1	STRG.3513.1,STRG.3513.4,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3684,blat.proc3825164.chain_3689	6
scaffold_17	alternate_exon	11340419	11341157	-	asmbl_18276,asmbl_18279	none	STRG.20687.1,blat.proc3825158.chain_1615,blat.proc3825158.chain_1616	3	STRG.20687.2	1
scaffold_13	skipped_exon	15510436	15512102	+	asmbl_11512	none	STRG.16593.1,Trinity_GG_26459_c0_g1_i1,blat.proc3825172.chain_1398,blat.proc3825172.chain_1400	4	STRG.16593.2	1
scaffold_26	alternate_exon	4813014	4813195	-	asmbl_35594	none	STRG.28201.1,blat.proc3825162.chain_1461	2	STRG.28201.2	1
scaffold_14	alt_acceptor	13589141	13589142	+	asmbl_12483	none	STRG.17644.2	1	STRG.17644.1,blat.proc3825172.chain_2354	2
scaffold_16	spliced_intron	5488508	5488595	-	asmbl_17110	none	STRG.19302.1,Trinity_GG_10796_c0_g1_i3,blat.proc3825158.chain_359	3	STRG.19302.2,Trinity_GG_10796_c0_g1_i2,blat.proc3825158.chain_358	3
scaffold_6	alternate_exon	5266625	5269490	+	asmbl_46934	none	STRG.7498.3,Trinity_GG_21420_c2_g1_i1,blat.proc3825166.chain_3700,blat.proc3825166.chain_3702	4	STRG.7498.2,blat.proc3825166.chain_3697	2
scaffold_24	starts_in_intron	9063033	9063033	+	asmbl_32487	none	STRG.26933.3	1	STRG.26933.1,STRG.26933.2,blat.proc3825178.chain_139	3
scaffold_19	alt_acceptor	12086627	12086628	-	asmbl_22449	none	STRG.22533.1,blat.proc3825158.chain_3291	2	blat.proc3825158.chain_3290	1
scaffold_11	retained_exon	9699752	9699805	-	asmbl_6953	none	STRG.13992.2,Trinity_GG_7828_c1_g1_i1	2	STRG.13992.3,Trinity_GG_7828_c1_g1_i3,blat.proc3825154.chain_2538	3
scaffold_6	alternate_exon	16607689	16607857	+	asmbl_47709	none	STRG.8386.1	1	STRG.8386.3,blat.proc3825168.chain_828,blat.proc3825168.chain_830	3
scaffold_22	retained_exon	9718220	9718379	+	asmbl_30314	none	STRG.25308.3	1	STRG.25308.1,blat.proc3825176.chain_2309	2
scaffold_8	alt_acceptor	18460460	18460461	-	asmbl_52545,asmbl_52547	none	STRG.10744.1,blat.proc3825152.chain_3025,blat.proc3825152.chain_3026	3	STRG.10744.2	1
scaffold_5	starts_in_intron	16506705	16506705	+	asmbl_46107	none	blat.proc3825166.chain_3016	1	STRG.6840.1,blat.proc3825166.chain_3018	2
scaffold_2	ends_in_intron	15458486	15458486	-	asmbl_23629	none	STRG.2502.1	1	Trinity_GG_1381_c0_g1_i2,blat.proc3825148.chain_2480	2
scaffold_16	alternate_exon	8638569	8641078	+	asmbl_16433	none	STRG.19492.3	1	STRG.19492.4	1
scaffold_1	alt_acceptor	4614950	4614951	+	asmbl_1684	none	STRG.295.1,blat.proc3825164.chain_449	2	STRG.295.2,STRG.295.3,STRG.295.4	3
scaffold_23	spliced_intron	4449754	4450584	-	asmbl_30866,asmbl_30870	none	STRG.25862.1,STRG.25862.5,Trinity_GG_14447_c0_g1_i2,blat.proc3825160.chain_3005	4	STRG.25862.2,Trinity_GG_14447_c0_g1_i4,blat.proc3825160.chain_3003	3
scaffold_6	starts_in_intron	797237	797237	-	asmbl_48068	none	blat.proc3825150.chain_3253	1	STRG.7142.1,STRG.7142.2,blat.proc3825150.chain_3254	3
scaffold_10	spliced_intron	2666399	2667073	+	asmbl_2988	none	STRG.12087.2,blat.proc3825170.chain_843	2	STRG.12087.1,Trinity_GG_24040_c1_g1_i1,blat.proc3825170.chain_844,blat.proc3825170.chain_845	4
scaffold_18	skipped_exon	3916636	3918640	-	asmbl_19784	none	STRG.21203.2	1	STRG.21203.3,STRG.21203.4,STRG.21203.5,blat.proc3825158.chain_2160	4
scaffold_5	spliced_intron	3935983	3936174	-	asmbl_43934	none	STRG.5864.1	1	STRG.5863.2	1
scaffold_16	retained_exon	7235244	7235324	-	asmbl_17175,asmbl_17176,asmbl_17177	none	STRG.19399.1,STRG.19399.3,STRG.19399.4	3	STRG.19399.2,STRG.19399.5,blat.proc3825158.chain_476	3
scaffold_1	alt_acceptor	12108820	12108821	+	asmbl_2175	none	Trinity_GG_17804_c0_g1_i1,blat.proc3825164.chain_951,blat.proc3825164.chain_953	3	STRG.826.2,blat.proc3825164.chain_954	2
scaffold_17	retained_intron	9854049	9854615	-	asmbl_18210	none	STRG.20605.1,Trinity_GG_11588_c0_g1_i1,blat.proc3825158.chain_1627	3	STRG.20605.2,Trinity_GG_11588_c0_g1_i2,blat.proc3825158.chain_1626	3
scaffold_19	retained_intron	7368522	7368604	-	asmbl_22242	none	Trinity_GG_12398_c0_g1_i2,blat.proc3825158.chain_3052	2	STRG.22215.1,blat.proc3825158.chain_3053	2
scaffold_20	retained_intron	1469616	1470058	-	asmbl_25574,asmbl_25575	none	STRG.22868.1,Trinity_GG_12770_c1_g1_i7,blat.proc3825158.chain_3740	3	STRG.22868.2,STRG.22868.4,blat.proc3825158.chain_3739	3
scaffold_12	starts_in_intron	9857556	9857556	+	asmbl_7884	none	Trinity_GG_25579_c0_g1_i3,blat.proc3825170.chain_3520	2	STRG.14955.1,blat.proc3825170.chain_3521	2
scaffold_3	retained_exon	15785044	15785748	-	asmbl_39449	none	STRG.3859.1,blat.proc3825148.chain_3733	2	STRG.3859.3	1
scaffold_18	alternate_exon	3224291	3224418	-	asmbl_19754	none	STRG.21165.2,blat.proc3825158.chain_2122,blat.proc3825158.chain_2123	3	STRG.21165.1	1
scaffold_22	skipped_exon	224379	224758	-	asmbl_29077	none	STRG.24683.5	1	STRG.24683.1,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1905,blat.proc3825160.chain_1908	5
scaffold_22	retained_exon	10044842	10045098	-	asmbl_29579	none	STRG.25357.1	1	STRG.25357.3	1
scaffold_27	alt_donor	1090741	1090742	+	asmbl_35986	none	STRG.28606.2,blat.proc3825178.chain_1735	2	STRG.28606.1,STRG.28606.3,blat.proc3825178.chain_1734	3
scaffold_9	retained_intron	17454872	17454904	+	asmbl_54630	none	STRG.11838.1,blat.proc3825170.chain_639	2	STRG.11838.2,STRG.11838.3	2
scaffold_20	retained_exon	6468274	6468350	-	asmbl_25838	none	STRG.23233.1,blat.proc3825160.chain_331	2	STRG.23233.2	1
scaffold_4	spliced_intron	306262	306547	-	asmbl_42325	none	STRG.4129.3,Trinity_GG_2302_c0_g1_i1,blat.proc3825150.chain_362	3	STRG.4129.2,Trinity_GG_2302_c0_g2_i1,blat.proc3825150.chain_364	3
scaffold_17	alt_acceptor	14325816	14325817	-	asmbl_18423	none	blat.proc3825158.chain_1884	1	Trinity_GG_11735_c0_g1_i2,blat.proc3825158.chain_1886	2
scaffold_14	alt_acceptor	9273611	9273612	-	asmbl_13360,asmbl_13362,asmbl_13366	none	STRG.17338.1,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204	5	STRG.17338.2	1
scaffold_26	alt_donor	7519030	7519031	+	asmbl_35121	none	STRG.28382.1,blat.proc3825178.chain_1465	2	STRG.28382.2	1
scaffold_14	alternate_exon	15607708	15608054	-	asmbl_13733	none	STRG.17803.1,blat.proc3825156.chain_2616	2	STRG.17803.3	1
scaffold_17	starts_in_intron	814277	814277	-	asmbl_17649	none	STRG.19930.1	1	blat.proc3825158.chain_953	1
scaffold_11	alt_acceptor	12678987	12678988	-	asmbl_7096	none	STRG.14162.2	1	STRG.14162.1	1
scaffold_9	spliced_intron	13297189	13297278	-	asmbl_55421	none	STRG.11628.5	1	STRG.11628.4	1
scaffold_5	starts_in_intron	14797007	14797007	-	asmbl_44623	none	blat.proc3825150.chain_2855	1	STRG.6684.1,blat.proc3825150.chain_2854,blat.proc3825150.chain_2856	3
scaffold_18	starts_in_intron	5588778	5588778	+	asmbl_20591	none	STRG.21318.2	1	STRG.21318.1,blat.proc3825174.chain_2272	2
scaffold_27	starts_in_intron	6194801	6194801	+	asmbl_36381	none	Trinity_GG_33374_c0_g2_i1,blat.proc3825178.chain_2233	2	STRG.29014.2,STRG.29014.3	2
scaffold_6	spliced_intron	5084001	5084167	-	asmbl_48398,asmbl_48399	none	STRG.7485.1,STRG.7485.2,blat.proc3825150.chain_3671	3	blat.proc3825150.chain_3672	1
scaffold_5	alt_donor	4856750	4856751	-	asmbl_44015	none	STRG.5945.2,blat.proc3825150.chain_2144	2	STRG.5945.1,blat.proc3825150.chain_2145,blat.proc3825150.chain_2146	3
scaffold_21	alt_donor	406306	406307	-	asmbl_27313	none	Trinity_GG_13230_c0_g1_i4,blat.proc3825160.chain_865	2	Trinity_GG_13230_c0_g1_i7,Trinity_GG_13230_c0_g1_i8,blat.proc3825160.chain_862,blat.proc3825160.chain_863	4
scaffold_18	alt_acceptor	9790630	9790631	+	asmbl_20891,asmbl_20892,asmbl_20893	none	STRG.21586.1,STRG.21586.3,blat.proc3825174.chain_2555,blat.proc3825174.chain_2556	4	STRG.21586.2	1
scaffold_26	alternate_exon	3783738	3783773	-	asmbl_35502	none	blat.proc3825162.chain_1357	1	STRG.28062.1,blat.proc3825162.chain_1358	2
scaffold_20	alt_acceptor	1875917	1875918	-	asmbl_25617	none	STRG.22923.1	1	blat.proc3825176.chain_121	1
scaffold_22	alt_acceptor	4416113	4416114	-	asmbl_29264	none	blat.proc3825160.chain_2000	1	STRG.24869.1,blat.proc3825160.chain_2020,blat.proc3825160.chain_2021	3
scaffold_6	alternate_exon	10137466	10138189	-	asmbl_48654	none	STRG.7845.2,Trinity_GG_4435_c1_g1_i1,blat.proc3825152.chain_226	3	STRG.7845.1,STRG.7845.3,blat.proc3825152.chain_225	3
scaffold_13	ends_in_intron	5808916	5808916	+	asmbl_10898	none	STRG.15896.2	1	STRG.15896.1,blat.proc3825172.chain_706	2
scaffold_6	skipped_exon	15944850	15945070	+	asmbl_47681	none	STRG.8324.2	1	STRG.8324.3	1
scaffold_9	alt_acceptor	12116114	12116115	+	asmbl_54413	none	STRG.11537.3	1	STRG.11537.4,Trinity_GG_23763_c0_g1_i1,blat.proc3825170.chain_365	3
scaffold_7	starts_in_intron	9666066	9666066	+	asmbl_50086	none	Trinity_GG_22399_c0_g1_i1,blat.proc3825168.chain_1681	2	STRG.9154.1,STRG.9154.2,blat.proc3825168.chain_1680	3
scaffold_20	spliced_intron	9185074	9185156	+	asmbl_26842	none	blat.proc3825160.chain_533	1	blat.proc3825160.chain_530,blat.proc3825176.chain_622	2
scaffold_13	starts_in_intron	6434359	6434359	-	asmbl_9790,asmbl_9793,asmbl_9795	none	STRG.15943.2,blat.proc3825156.chain_845,blat.proc3825156.chain_850	3	STRG.15943.1,blat.proc3825156.chain_846,blat.proc3825156.chain_847	3
scaffold_11	ends_in_intron	11997526	11997526	-	asmbl_7060	none	Trinity_GG_7897_c1_g1_i1,blat.proc3825154.chain_2674	2	STRG.14126.1,STRG.14126.2,STRG.14126.3,STRG.14126.4,Trinity_GG_7897_c0_g1_i1,Trinity_GG_7897_c0_g1_i2,Trinity_GG_7897_c0_g1_i4,Trinity_GG_7897_c0_g1_i5,blat.proc3825154.chain_2669,blat.proc3825154.chain_2671,blat.proc3825154.chain_2672,blat.proc3825154.chain_2673	12
scaffold_2	spliced_intron	20441919	20442053	+	asmbl_25330,asmbl_25332	none	STRG.2885.1,STRG.2885.2,Trinity_GG_18916_c0_g1_i1,blat.proc3825164.chain_3086	4	Trinity_GG_18916_c0_g1_i2,blat.proc3825164.chain_3087	2
scaffold_17	ends_in_intron	1099552	1099552	+	asmbl_18587	none	Trinity_GG_28231_c0_g2_i1,blat.proc3825174.chain_825	2	STRG.19952.1,blat.proc3825174.chain_824	2
scaffold_15	starts_in_intron	9015909	9015909	-	asmbl_14366	none	blat.proc3825156.chain_3333	1	STRG.18447.1,Trinity_GG_10372_c0_g1_i1,blat.proc3825156.chain_3334	3
scaffold_3	alt_acceptor	14479862	14479863	+	asmbl_40528	none	STRG.3789.1,blat.proc3825166.chain_286	2	STRG.3789.2,Trinity_GG_19439_c0_g1_i1,blat.proc3825166.chain_287,blat.proc3825166.chain_289	4
scaffold_5	alternate_exon	17225169	17225757	+	asmbl_46152	none	blat.proc3825166.chain_3073	1	blat.proc3825166.chain_3077	1
scaffold_23	spliced_intron	3655994	3656154	+	asmbl_31462	none	STRG.25792.1,blat.proc3825176.chain_2719	2	STRG.25792.2,Trinity_GG_31535_c0_g1_i1,Trinity_GG_31535_c0_g1_i3,blat.proc3825176.chain_2718,blat.proc3825176.chain_2720	5
scaffold_25	alt_donor	3677684	3677685	+	asmbl_33447	none	STRG.27313.1,blat.proc3825178.chain_361	2	STRG.27313.2	1
scaffold_12	ends_in_intron	4795279	4795279	-	asmbl_8459	none	STRG.14656.2,Trinity_GG_8179_c1_g2_i1,blat.proc3825154.chain_3180	3	STRG.14656.1	1
scaffold_14	spliced_intron	9273608	9273885	-	asmbl_13364	none	STRG.17338.2	1	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203	2
scaffold_20	alt_acceptor	11574016	11574017	-	asmbl_26158,asmbl_26159,asmbl_26160	none	STRG.23664.1,STRG.23664.2,STRG.23664.3,blat.proc3825160.chain_730,blat.proc3825160.chain_731	5	STRG.23664.4	1
scaffold_2	spliced_intron	15274237	15274329	+	asmbl_25010,asmbl_25011,asmbl_25013,asmbl_25017,asmbl_25018,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2611,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7	Trinity_GG_18659_c1_g1_i2,blat.proc3825164.chain_2613,blat.proc3825164.chain_2616	3
scaffold_12	alternate_exon	3805788	3809087	+	asmbl_7572	none	STRG.14588.1,blat.proc3825170.chain_3153	2	STRG.14588.2,STRG.14588.3,blat.proc3825170.chain_3154	3
scaffold_10	alt_donor	2762595	2762596	-	asmbl_4125,asmbl_4126	none	STRG.12095.1,STRG.12095.2,blat.proc3825154.chain_649	3	STRG.12095.3,blat.proc3825154.chain_647,blat.proc3825154.chain_648	3
scaffold_24	spliced_intron	9064471	9064576	+	asmbl_32485,asmbl_32487	none	STRG.26933.1,STRG.26933.2,STRG.26933.3,blat.proc3825178.chain_139	4	Trinity_GG_32210_c0_g1_i2,blat.proc3825178.chain_138	2
scaffold_13	spliced_intron	5506761	5506941	+	asmbl_10857	none	STRG.15845.2,Trinity_GG_25977_c0_g1_i2,blat.proc3825172.chain_516	3	STRG.15845.1,STRG.15845.3,Trinity_GG_25977_c0_g1_i1,Trinity_GG_25977_c0_g1_i4,blat.proc3825172.chain_514,blat.proc3825172.chain_515	6
scaffold_28	alt_acceptor	2653736	2653737	+	asmbl_37394	none	STRG.29457.2,blat.proc3825178.chain_2671	2	STRG.29457.1	1
scaffold_23	starts_in_intron	10974736	10974736	+	asmbl_31894	none	Trinity_GG_31796_c0_g1_i8,blat.proc3825176.chain_3180	2	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_8	alt_donor	44422	44423	-	asmbl_51689	none	STRG.9710.2	1	STRG.9710.1,blat.proc3825152.chain_2071	2
scaffold_6	alternate_exon	16607493	16607857	+	asmbl_47710	none	STRG.8386.2	1	STRG.8386.3,blat.proc3825168.chain_828,blat.proc3825168.chain_830	3
scaffold_26	alternate_exon	9839382	9840008	-	asmbl_35793	none	STRG.28545.1,Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	3	STRG.28545.3,Trinity_GG_15923_c0_g1_i3,blat.proc3825162.chain_1674	3
scaffold_1	alternate_exon	20135133	20135190	-	asmbl_1174	none	STRG.1386.7	1	STRG.1386.1,STRG.1386.5,blat.proc3825148.chain_1398	3
scaffold_5	alternate_exon	16741393	16741837	-	asmbl_44775	none	STRG.6866.2,Trinity_GG_3844_c0_g1_i2,blat.proc3825150.chain_3034	3	STRG.6866.1,Trinity_GG_3844_c0_g1_i1,blat.proc3825150.chain_3033	3
scaffold_24	alt_acceptor	7934981	7934982	+	asmbl_32404	none	STRG.26852.1,Trinity_GG_32161_c2_g1_i2,blat.proc3825178.chain_65	3	STRG.26852.2	1
scaffold_12	alt_acceptor	4213847	4213848	+	asmbl_7589,asmbl_7592	none	STRG.14601.1,STRG.14601.2,blat.proc3825170.chain_3167	3	STRG.14601.3,blat.proc3825170.chain_3169	2
scaffold_17	starts_in_intron	3037452	3037452	-	asmbl_17796	none	blat.proc3825158.chain_1137	1	STRG.20095.5,blat.proc3825158.chain_1138	2
scaffold_18	alt_donor	4712320	4712321	-	asmbl_19818	none	STRG.21263.2	1	STRG.21263.1	1
scaffold_1	skipped_exon	15280374	15281792	+	asmbl_2438	none	STRG.1094.3,blat.proc3825164.chain_1250	2	STRG.1094.1,STRG.1094.2	2
scaffold_23	retained_exon	3239522	3240523	+	asmbl_31428,asmbl_31429	none	STRG.25761.2,STRG.25761.3,blat.proc3825176.chain_2713,blat.proc3825176.chain_2714	4	STRG.25761.1	1
scaffold_20	alt_acceptor	631243	631244	-	asmbl_25501	none	STRG.22765.3,blat.proc3825158.chain_3609	2	STRG.22765.1,blat.proc3825158.chain_3610	2
scaffold_6	starts_in_intron	15760884	15760884	-	asmbl_49083	none	Trinity_GG_4745_c0_g1_i4	1	STRG.8318.1,STRG.8318.2,STRG.8318.3,blat.proc3825152.chain_757,blat.proc3825152.chain_758,blat.proc3825152.chain_759	6
scaffold_7	alt_donor	18338023	18338024	+	asmbl_50518	none	STRG.9661.2,blat.proc3825168.chain_2178	2	STRG.9661.1,blat.proc3825168.chain_2177	2
scaffold_2	alt_donor	7470851	7470852	-	asmbl_23267	none	blat.proc3825148.chain_2062	1	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i24,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2052,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063,blat.proc3825148.chain_2064	8
scaffold_12	retained_exon	10004421	10004603	-	asmbl_8714	none	STRG.14976.1	1	STRG.14976.2,blat.proc3825154.chain_3480	2
scaffold_9	alt_acceptor	11597488	11597489	-	asmbl_55299	none	STRG.11477.1,blat.proc3825152.chain_3628	2	STRG.11477.2,blat.proc3825152.chain_3629	2
scaffold_2	starts_in_intron	16343951	16343951	-	asmbl_23683	none	blat.proc3825148.chain_2567	1	STRG.2577.1	1
scaffold_1	alternate_exon	20755379	20756162	+	asmbl_2650	none	STRG.1422.2,blat.proc3825164.chain_1495	2	STRG.1422.1,blat.proc3825164.chain_1497,blat.proc3825164.chain_1498	3
scaffold_14	alternate_exon	3161275	3162462	+	asmbl_11917	none	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2	blat.proc3825172.chain_1609	1
scaffold_14	retained_intron	15247760	15247780	+	asmbl_12580	none	blat.proc3825172.chain_2468	1	blat.proc3825172.chain_2470	1
scaffold_13	ends_in_intron	2070913	2070913	+	asmbl_10577	none	Trinity_GG_25866_c0_g1_i1,blat.proc3825172.chain_306	2	STRG.15540.1,STRG.15540.2,STRG.15540.3,blat.proc3825172.chain_305	4
scaffold_14	retained_intron	15345450	15346296	-	asmbl_13714	none	STRG.17765.2	1	STRG.17765.1,Trinity_GG_9998_c0_g1_i4,blat.proc3825156.chain_2605	3
scaffold_7	retained_intron	9782875	9783156	-	asmbl_51066	none	STRG.9172.1,blat.proc3825152.chain_1518	2	STRG.9172.2,blat.proc3825152.chain_1517	2
scaffold_9	starts_in_intron	16687858	16687858	-	asmbl_55614	none	Trinity_GG_6523_c0_g1_i4,blat.proc3825154.chain_264	2	STRG.11816.1,blat.proc3825154.chain_262,blat.proc3825154.chain_263	3
scaffold_25	skipped_exon	2638200	2639906	+	asmbl_33395	none	blat.proc3825178.chain_351	1	STRG.27232.1,blat.proc3825178.chain_350	2
scaffold_1	retained_exon	22371610	22371747	+	asmbl_2689	none	STRG.1491.1	1	STRG.1491.2,STRG.1491.5	2
scaffold_7	retained_intron	7927994	7928676	-	asmbl_50979	none	blat.proc3825152.chain_1441	1	STRG.9043.1,blat.proc3825152.chain_1442,blat.proc3825152.chain_1443	3
scaffold_1	spliced_intron	19006450	19006518	+	asmbl_2575	none	STRG.1324.1	1	STRG.1324.2,STRG.1324.4	2
scaffold_6	ends_in_intron	8583633	8583633	+	asmbl_47157	none	Trinity_GG_21555_c0_g1_i5,blat.proc3825168.chain_169	2	STRG.7739.1,STRG.7739.2,blat.proc3825168.chain_173	3
scaffold_22	alt_donor	10044913	10044914	-	asmbl_29581	none	STRG.25357.2	1	STRG.25357.1,STRG.25357.4	2
scaffold_2	ends_in_intron	4070328	4070328	-	asmbl_23049	none	Trinity_GG_1029_c0_g1_i2,blat.proc3825148.chain_1832	2	STRG.1852.1,blat.proc3825148.chain_1830	2
scaffold_15	retained_exon	8796207	8796344	-	asmbl_14352,asmbl_14353	none	STRG.18424.1,STRG.18424.2,blat.proc3825156.chain_3313,blat.proc3825156.chain_3314	4	STRG.18424.3,blat.proc3825156.chain_3311	2
scaffold_16	retained_intron	14553177	14553355	+	asmbl_16687,asmbl_16691	none	STRG.19851.3,Trinity_GG_28180_c0_g1_i1,blat.proc3825174.chain_731	3	STRG.19851.1,STRG.19851.2,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i3,Trinity_GG_28180_c0_g1_i4,Trinity_GG_28180_c0_g1_i6,blat.proc3825174.chain_729,blat.proc3825174.chain_730,blat.proc3825174.chain_732,blat.proc3825174.chain_733	10
scaffold_7	skipped_exon	8295633	8297094	-	asmbl_50994	none	STRG.9066.4,blat.proc3825152.chain_1454	2	STRG.9066.1,STRG.9066.2,STRG.9066.3,blat.proc3825152.chain_1452,blat.proc3825152.chain_1453,blat.proc3825152.chain_1457	6
scaffold_7	alt_acceptor	12368412	12368413	+	asmbl_50252	none	blat.proc3825168.chain_1877	1	STRG.9336.1,blat.proc3825168.chain_1875,blat.proc3825168.chain_1878,blat.proc3825168.chain_1880	4
scaffold_1	starts_in_intron	170465	170465	+	asmbl_1405	none	Trinity_GG_17335_c0_g2_i2,blat.proc3825164.chain_112	2	STRG.15.1,Trinity_GG_17335_c0_g1_i2,Trinity_GG_17335_c0_g2_i1,blat.proc3825164.chain_111,blat.proc3825164.chain_113	5
scaffold_2	starts_in_intron	4324164	4324164	-	asmbl_23067	none	blat.proc3825148.chain_1769	1	STRG.1862.1,STRG.1862.2,blat.proc3825148.chain_1768,blat.proc3825148.chain_1770	4
scaffold_5	retained_intron	1249035	1249146	-	asmbl_43845	none	Trinity_GG_3222_c0_g1_i3,blat.proc3825150.chain_1931	2	STRG.5688.1,blat.proc3825150.chain_1932,blat.proc3825150.chain_1933	3
scaffold_10	alternate_exon	8902675	8902780	-	asmbl_4639	none	blat.proc3825154.chain_1246	1	STRG.12634.1,STRG.12634.2,STRG.12634.3,blat.proc3825154.chain_1247,blat.proc3825154.chain_1248,blat.proc3825178.chain_3390	6
scaffold_17	retained_exon	12199388	12199478	+	asmbl_19279	none	STRG.20759.1,blat.proc3825174.chain_1662	2	STRG.20759.3,blat.proc3825174.chain_1661	2
scaffold_2	alt_acceptor	7469205	7469206	-	asmbl_23260,asmbl_23261,asmbl_23265	none	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063	5	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2
scaffold_5	retained_intron	15462675	15462768	-	asmbl_44678	none	blat.proc3825150.chain_2874	1	STRG.6732.1,STRG.6732.2,blat.proc3825150.chain_2873	3
scaffold_27	ends_in_intron	2814642	2814642	+	asmbl_36120	none	blat.proc3825178.chain_1928	1	STRG.28763.2,STRG.28763.3,Trinity_GG_33230_c1_g1_i2,blat.proc3825178.chain_1927	4
scaffold_14	alt_donor	8756741	8756742	-	asmbl_13344	none	STRG.17312.1,blat.proc3825156.chain_2095	2	STRG.17312.2	1
scaffold_25	starts_in_intron	5155595	5155595	-	asmbl_34245	none	Trinity_GG_15390_c0_g1_i4,blat.proc3825162.chain_804	2	STRG.27443.1,STRG.27443.2,STRG.27443.3,blat.proc3825162.chain_805,blat.proc3825162.chain_808,blat.proc3825162.chain_810	6
scaffold_2	alternate_exon	888819	889459	+	asmbl_24134	none	STRG.1565.5	1	blat.proc3825164.chain_1712	1
scaffold_6	starts_in_intron	6942625	6942625	+	asmbl_47024	none	STRG.7602.3,Trinity_GG_21475_c0_g1_i2,blat.proc3825168.chain_43	3	STRG.7602.1,STRG.7602.2,blat.proc3825168.chain_42,blat.proc3825168.chain_44	4
scaffold_6	alt_acceptor	10182549	10182550	-	asmbl_48670,asmbl_48672	none	STRG.7858.1,Trinity_GG_4441_c0_g1_i3,Trinity_GG_4441_c0_g1_i4,blat.proc3825152.chain_233,blat.proc3825152.chain_235	5	STRG.7858.2,Trinity_GG_4441_c0_g1_i2,blat.proc3825152.chain_234	3
scaffold_2	alt_acceptor	15375636	15375637	+	asmbl_25035	none	STRG.2493.1,blat.proc3825164.chain_2778	2	STRG.2493.2	1
scaffold_12	starts_in_intron	14043792	14043792	-	asmbl_8959	none	blat.proc3825156.chain_38	1	STRG.15234.1,STRG.15234.2,STRG.15234.3,blat.proc3825156.chain_37,blat.proc3825156.chain_39,blat.proc3825156.chain_40	6
scaffold_25	alt_donor	9551845	9551846	+	asmbl_33832	none	STRG.27772.3	1	STRG.27772.1,blat.proc3825178.chain_811,blat.proc3825178.chain_814	3
scaffold_13	retained_exon	11377478	11377534	-	asmbl_10080,asmbl_10082,asmbl_10084,asmbl_10086,asmbl_10088,asmbl_10089	none	STRG.16301.1,STRG.16301.2,STRG.16301.3,STRG.16301.5,STRG.16301.8,blat.proc3825156.chain_1169,blat.proc3825156.chain_1172,blat.proc3825156.chain_1173,blat.proc3825156.chain_1174	9	STRG.16301.4,blat.proc3825156.chain_1170	2
scaffold_9	starts_in_intron	15349756	15349756	+	asmbl_54554	none	STRG.11736.3	1	STRG.11736.1	1
scaffold_11	ends_in_intron	8597451	8597451	+	asmbl_5807	none	blat.proc3825170.chain_2445	1	STRG.13876.1,STRG.13876.2,STRG.13876.3,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i3,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2448,blat.proc3825170.chain_2449	10
scaffold_8	retained_intron	16502745	16503358	-	asmbl_52402,asmbl_52404	none	Trinity_GG_5934_c0_g1_i21,blat.proc3825152.chain_2928,blat.proc3825152.chain_2938	3	STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	5
scaffold_19	ends_in_intron	5647485	5647485	-	asmbl_22185	none	STRG.22131.2	1	STRG.22131.1,blat.proc3825158.chain_2912	2
scaffold_8	ends_in_intron	13136286	13136286	-	asmbl_52269	none	Trinity_GG_5839_c2_g1_i1,blat.proc3825152.chain_2753	2	STRG.10488.1,STRG.10488.2,blat.proc3825152.chain_2748,blat.proc3825152.chain_2749,blat.proc3825152.chain_2750,blat.proc3825152.chain_2751	6
scaffold_25	retained_intron	4810463	4810690	+	asmbl_33534	none	blat.proc3825178.chain_526	1	STRG.27415.1,Trinity_GG_32429_c0_g1_i5,blat.proc3825178.chain_527	3
scaffold_2	retained_intron	4178724	4178813	+	asmbl_24343	none	blat.proc3825164.chain_1963	1	STRG.1857.1,blat.proc3825164.chain_1964	2
scaffold_17	spliced_intron	9029724	9030391	-	asmbl_18139,asmbl_18140,asmbl_18142,asmbl_18143	none	STRG.20532.1,STRG.20532.2,STRG.20532.4,STRG.20532.5,blat.proc3825158.chain_1576	5	Trinity_GG_11556_c0_g1_i5,blat.proc3825158.chain_1574	2
scaffold_10	ends_in_intron	13883969	13883969	+	asmbl_3627	none	blat.proc3825170.chain_1590	1	STRG.12976.1,STRG.12976.2,Trinity_GG_24460_c0_g1_i4,blat.proc3825170.chain_1588,blat.proc3825170.chain_1589	5
scaffold_10	retained_intron	7765135	7765301	-	asmbl_4552	none	blat.proc3825154.chain_1148	1	STRG.12568.1,STRG.12568.2,blat.proc3825154.chain_1149	3
scaffold_12	starts_in_intron	7406456	7406456	-	asmbl_8582	none	blat.proc3825154.chain_3332	1	STRG.14824.1,STRG.14824.2,STRG.14824.3,blat.proc3825154.chain_3333	4
scaffold_16	alt_acceptor	14655989	14655990	-	asmbl_17487	none	STRG.19863.1,blat.proc3825158.chain_905	2	STRG.19863.2,blat.proc3825158.chain_906	2
scaffold_5	alt_acceptor	6278137	6278138	-	asmbl_44087	none	STRG.6037.2	1	STRG.6037.1,blat.proc3825150.chain_2242,blat.proc3825150.chain_2244	3
scaffold_17	starts_in_intron	3427745	3427745	+	asmbl_18726	none	Trinity_GG_28335_c0_g1_i2,blat.proc3825174.chain_995	2	STRG.20123.1,blat.proc3825174.chain_994	2
scaffold_18	alternate_exon	1392132	1392292	-	asmbl_19621	none	blat.proc3825158.chain_2003	1	STRG.21025.1,STRG.21025.2,STRG.21025.3,blat.proc3825158.chain_2005,blat.proc3825158.chain_2006	5
scaffold_17	spliced_intron	8626956	8627047	+	asmbl_19009	none	STRG.20477.1,Trinity_GG_28498_c0_g1_i2,blat.proc3825174.chain_1276	3	STRG.20477.2,Trinity_GG_28498_c0_g1_i1,blat.proc3825174.chain_1274	3
scaffold_24	retained_intron	3655845	3656072	+	asmbl_32147	none	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3	STRG.26550.1,blat.proc3825176.chain_3465,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469	4
scaffold_13	spliced_intron	2339458	2339876	+	asmbl_10597,asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605	none	STRG.15564.10,STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5	5	STRG.15564.8,STRG.15564.9	2
scaffold_500	retained_intron	746	1074	+	asmbl_46494,asmbl_46495	none	blat.proc3825178.chain_3434,blat.proc3825178.chain_3437	2	STRG.30357.1,STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6	5
scaffold_10	spliced_intron	17325221	17325630	-	asmbl_5053	none	STRG.13182.2,blat.proc3825154.chain_1776	2	STRG.13182.3,blat.proc3825154.chain_1777	2
scaffold_4	starts_in_intron	16317463	16317463	+	asmbl_41964,asmbl_41965	none	STRG.5200.4,blat.proc3825166.chain_1501	2	STRG.5200.1,STRG.5200.2,STRG.5200.3,blat.proc3825166.chain_1499	4
scaffold_9	starts_in_intron	16569376	16569376	+	asmbl_54597	none	Trinity_GG_23904_c0_g1_i14,blat.proc3825170.chain_611	2	STRG.11807.1,STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i19,Trinity_GG_23904_c0_g1_i21,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_610,blat.proc3825170.chain_612,blat.proc3825170.chain_613,blat.proc3825170.chain_614,blat.proc3825170.chain_615,blat.proc3825170.chain_616,blat.proc3825170.chain_617	15
scaffold_16	alternate_exon	7531944	7533708	+	asmbl_16346	none	STRG.19412.1,blat.proc3825174.chain_293	2	STRG.19412.3,blat.proc3825174.chain_294	2
scaffold_16	retained_exon	7277693	7278101	+	asmbl_16331	none	STRG.19393.1,blat.proc3825174.chain_263	2	blat.proc3825174.chain_264	1
scaffold_17	starts_in_intron	993049	993049	-	asmbl_17661	none	Trinity_GG_11151_c0_g1_i2	1	STRG.19943.1,Trinity_GG_11151_c0_g1_i1,blat.proc3825158.chain_928	3
scaffold_2	alternate_exon	798691	801955	+	asmbl_24107	none	Trinity_GG_18205_c1_g1_i1,blat.proc3825164.chain_1697,blat.proc3825164.chain_1698	3	STRG.1557.2	1
scaffold_14	alt_donor	15999886	15999887	-	asmbl_13766	none	STRG.17841.2	1	STRG.17841.1,blat.proc3825156.chain_2641	2
scaffold_8	alternate_exon	17495619	17501963	+	asmbl_53482,asmbl_53483	none	STRG.10682.1,STRG.10682.3,Trinity_GG_23212_c1_g1_i1,blat.proc3825168.chain_3150,blat.proc3825168.chain_3153,blat.proc3825168.chain_3157	6	STRG.10682.4	1
scaffold_6	alt_acceptor	3287462	3287463	-	asmbl_48237	none	STRG.7334.3	1	STRG.7334.1,STRG.7334.2	2
scaffold_20	spliced_intron	11285643	11285794	+	asmbl_27024,asmbl_27026	none	STRG.23634.3,Trinity_GG_30350_c0_g1_i2,blat.proc3825176.chain_746	3	STRG.23634.1,STRG.23634.2,blat.proc3825176.chain_747	3
scaffold_11	retained_intron	16651862	16652153	+	asmbl_6169	none	blat.proc3825170.chain_2890	1	STRG.14364.1,blat.proc3825170.chain_2892	2
scaffold_5	skipped_exon	2173563	2176098	-	asmbl_43875	none	STRG.5754.3	1	STRG.5754.1,STRG.5754.2,blat.proc3825150.chain_1989	3
scaffold_27	alternate_exon	2832415	2836154	+	asmbl_36127	none	STRG.28768.1,blat.proc3825178.chain_1934	2	Trinity_GG_33233_c0_g1_i2,blat.proc3825178.chain_1935	2
scaffold_6	alt_donor	17847254	17847255	+	asmbl_47792	none	blat.proc3825168.chain_931	1	STRG.8474.1	1
scaffold_2	alt_donor	14232097	14232098	-	asmbl_23588	none	blat.proc3825148.chain_2420	1	STRG.2421.1	1
scaffold_10	spliced_intron	6074390	6075518	-	asmbl_4422,asmbl_4423,asmbl_4427,asmbl_4428,asmbl_4429,asmbl_4431	none	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033	7	blat.proc3825154.chain_1026,blat.proc3825154.chain_1027	2
scaffold_6	spliced_intron	15761296	15762180	-	asmbl_49082,asmbl_49084,asmbl_49085,asmbl_49086	none	STRG.8318.1,STRG.8318.2,blat.proc3825152.chain_757,blat.proc3825152.chain_758,blat.proc3825152.chain_759	5	STRG.8318.3,Trinity_GG_4745_c1_g1_i2,blat.proc3825152.chain_761	3
scaffold_15	starts_in_intron	14320190	14320190	+	asmbl_15678	none	Trinity_GG_27627_c0_g1_i1,blat.proc3825172.chain_3446	2	STRG.18860.1,blat.proc3825172.chain_3447	2
scaffold_22	alt_donor	6064504	6064505	+	asmbl_30091	none	blat.proc3825176.chain_2077	1	blat.proc3825176.chain_2078	1
scaffold_20	alternate_exon	10384363	10384549	+	asmbl_26962	none	blat.proc3825176.chain_668	1	STRG.23583.1,STRG.23583.2,STRG.23583.3,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_670,blat.proc3825176.chain_671	7
scaffold_13	alt_acceptor	16460089	16460090	-	asmbl_10304,asmbl_10305	none	STRG.16703.4,blat.proc3825156.chain_1485	2	STRG.16703.1,STRG.16703.3,Trinity_GG_9330_c0_g1_i3,Trinity_GG_9330_c0_g1_i5,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1487,blat.proc3825156.chain_1488,blat.proc3825156.chain_1489	8
scaffold_11	retained_intron	6952071	6952149	-	asmbl_6746,asmbl_6748,asmbl_6749,asmbl_6750	none	STRG.13721.1,STRG.13721.3,blat.proc3825154.chain_2294,blat.proc3825154.chain_2295,blat.proc3825154.chain_2296,blat.proc3825154.chain_2297	6	STRG.13721.2,blat.proc3825154.chain_2298	2
scaffold_15	alt_acceptor	14743444	14743445	-	asmbl_14743	none	STRG.18889.2,blat.proc3825158.chain_14	2	STRG.18889.1,blat.proc3825158.chain_15	2
scaffold_5	starts_in_intron	7029787	7029787	+	asmbl_45472,asmbl_45478	none	Trinity_GG_20674_c0_g1_i2,blat.proc3825166.chain_2372	2	STRG.6116.1,STRG.6116.2,STRG.6116.3,STRG.6116.4,blat.proc3825166.chain_2374	5
scaffold_17	alt_donor	11567861	11567862	+	asmbl_19236	none	STRG.20703.3,Trinity_GG_28635_c0_g1_i1,blat.proc3825174.chain_1548	3	STRG.20703.1,STRG.20703.2,STRG.20703.4	3
scaffold_20	retained_intron	8323604	8323724	+	asmbl_26764,asmbl_26765	none	STRG.23377.1,blat.proc3825176.chain_506,blat.proc3825176.chain_508	3	STRG.23377.2,blat.proc3825176.chain_507	2
scaffold_18	spliced_intron	2082391	2082658	+	asmbl_20402,asmbl_20403,asmbl_20405	none	STRG.21110.1,STRG.21110.2,Trinity_GG_28919_c0_g1_i3,blat.proc3825174.chain_2028,blat.proc3825174.chain_2029	5	STRG.21110.3,blat.proc3825174.chain_2026,blat.proc3825174.chain_2027	3
scaffold_13	spliced_intron	274732	275404	+	asmbl_10467	none	STRG.15434.3,blat.proc3825172.chain_196	2	STRG.15434.2,blat.proc3825172.chain_195,blat.proc3825172.chain_197	3
scaffold_26	spliced_intron	5487654	5488597	+	asmbl_35000,asmbl_35002	none	STRG.28257.2,STRG.28257.4,Trinity_GG_32935_c1_g2_i1,blat.proc3825178.chain_1368,blat.proc3825178.chain_1369	5	STRG.28257.1,Trinity_GG_32935_c0_g1_i1,Trinity_GG_32935_c0_g1_i2,Trinity_GG_32935_c1_g1_i1,Trinity_GG_32935_c1_g1_i2,blat.proc3825178.chain_1361,blat.proc3825178.chain_1362,blat.proc3825178.chain_1363,blat.proc3825178.chain_1364	9
scaffold_16	retained_intron	10449577	10449822	+	asmbl_16537,asmbl_16539	none	Trinity_GG_28027_c0_g1_i3,blat.proc3825174.chain_485,blat.proc3825174.chain_489	3	STRG.19614.1,STRG.19614.2,STRG.19614.3,STRG.19614.4,Trinity_GG_28027_c0_g1_i1,blat.proc3825174.chain_484,blat.proc3825174.chain_486,blat.proc3825174.chain_488	8
scaffold_19	starts_in_intron	2944494	2944494	+	asmbl_21296	none	blat.proc3825174.chain_3009	1	STRG.21983.1,Trinity_GG_29464_c1_g1_i2,blat.proc3825174.chain_3008	3
scaffold_13	spliced_intron	3027963	3028113	-	asmbl_9508	none	STRG.15608.2	1	STRG.15608.1,blat.proc3825156.chain_456	2
scaffold_14	ends_in_intron	11577355	11577355	-	asmbl_13500	none	Trinity_GG_9808_c0_g1_i3,blat.proc3825156.chain_2301	2	STRG.17499.2,STRG.17499.3,STRG.17499.4,blat.proc3825156.chain_2302,blat.proc3825156.chain_2304	5
scaffold_7	alternate_exon	1388753	1388863	-	asmbl_50723	none	blat.proc3825152.chain_1119	1	blat.proc3825152.chain_1117	1
scaffold_1	ends_in_intron	15887830	15887830	-	asmbl_963	none	Trinity_GG_590_c1_g1_i1,blat.proc3825148.chain_1137	2	STRG.1118.2	1
scaffold_5	starts_in_intron	13072907	13072907	-	asmbl_44509	none	blat.proc3825150.chain_2720	1	STRG.6539.1,blat.proc3825150.chain_2719	2
scaffold_1	alternate_exon	2792650	2795383	+	asmbl_1553,asmbl_1554	none	STRG.181.1,STRG.181.2,Trinity_GG_17407_c1_g1_i1,blat.proc3825164.chain_237,blat.proc3825164.chain_238	5	blat.proc3825164.chain_236	1
scaffold_43	retained_intron	829	922	-	asmbl_43694,asmbl_43696	none	STRG.30047.1,STRG.30047.5	2	STRG.30047.2	1
scaffold_6	spliced_intron	3292218	3292322	+	asmbl_46825	none	STRG.7335.1,blat.proc3825166.chain_3457	2	blat.proc3825166.chain_3456	1
scaffold_5	spliced_intron	107811	108165	-	asmbl_43755	none	STRG.5574.2	1	STRG.5574.1,Trinity_GG_3150_c0_g1_i2	2
scaffold_20	alternate_exon	5115132	5115238	+	asmbl_26604	none	blat.proc3825176.chain_322	1	STRG.23147.1,Trinity_GG_30078_c0_g1_i5,blat.proc3825176.chain_325	3
scaffold_12	spliced_intron	16338959	16339103	+	asmbl_8161	none	STRG.15393.1,blat.proc3825172.chain_105	2	blat.proc3825172.chain_103	1
scaffold_19	alternate_exon	11461314	11461425	-	asmbl_22390	none	blat.proc3825158.chain_3201	1	STRG.22479.1,blat.proc3825158.chain_3198	2
scaffold_21	retained_exon	8278464	8278505	+	asmbl_28804	none	STRG.24368.1	1	blat.proc3825176.chain_1550	1
scaffold_24	retained_exon	7201371	7201439	+	asmbl_32378	none	STRG.26769.1	1	STRG.26769.2,STRG.26769.3	2
scaffold_2	alt_acceptor	5717668	5717669	+	asmbl_24433,asmbl_24434	none	STRG.1961.2,STRG.1961.3,blat.proc3825164.chain_2084	3	STRG.1961.1,Trinity_GG_18408_c0_g1_i2,blat.proc3825164.chain_2083	3
scaffold_23	retained_intron	9518168	9518302	-	asmbl_31104	none	Trinity_GG_14629_c0_g1_i3,blat.proc3825160.chain_3309,blat.proc3825160.chain_3311	3	blat.proc3825160.chain_3310	1
scaffold_15	alternate_exon	12063118	12063212	+	asmbl_15523	none	STRG.18652.2,blat.proc3825172.chain_3280	2	STRG.18652.1,blat.proc3825172.chain_3281	2
scaffold_6	retained_exon	8586962	8587596	+	asmbl_47158,asmbl_47159	none	STRG.7739.1,Trinity_GG_21555_c0_g1_i9,blat.proc3825168.chain_170,blat.proc3825168.chain_173	4	STRG.7739.2	1
scaffold_24	retained_intron	6432265	6432478	-	asmbl_32957,asmbl_32959	none	STRG.26697.2,blat.proc3825160.chain_3740,blat.proc3825160.chain_3741	3	STRG.26697.1,blat.proc3825160.chain_3742	2
scaffold_1	spliced_intron	5207359	5207851	+	asmbl_1704,asmbl_1705,asmbl_1707,asmbl_1709,asmbl_1710,asmbl_1711,asmbl_1716,asmbl_1718	none	STRG.329.1,STRG.329.2,STRG.329.3,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_470,blat.proc3825164.chain_472,blat.proc3825164.chain_474,blat.proc3825164.chain_476	9	blat.proc3825164.chain_464,blat.proc3825164.chain_465,blat.proc3825164.chain_471	3
scaffold_1	retained_intron	5750406	5750501	+	asmbl_1789	none	blat.proc3825164.chain_517	1	STRG.378.1,STRG.378.2,STRG.378.3,blat.proc3825164.chain_513,blat.proc3825164.chain_514,blat.proc3825164.chain_516	6
scaffold_15	alternate_exon	1690559	1690611	+	asmbl_15031	none	STRG.17978.2	1	STRG.17978.1,blat.proc3825172.chain_2690	2
scaffold_3	retained_intron	4889766	4890090	+	asmbl_40037,asmbl_40039	none	STRG.3183.4,Trinity_GG_19105_c1_g1_i6,blat.proc3825164.chain_3436	3	blat.proc3825164.chain_3433	1
scaffold_23	retained_intron	7279427	7279762	-	asmbl_31024,asmbl_31025	none	STRG.26052.2,blat.proc3825160.chain_3145	2	STRG.26052.1,blat.proc3825160.chain_3144	2
scaffold_1	alternate_exon	5185249	5185741	-	asmbl_236	none	STRG.324.1,Trinity_GG_166_c0_g1_i2,blat.proc3825148.chain_285	3	STRG.324.2,Trinity_GG_166_c0_g1_i3,blat.proc3825148.chain_286	3
scaffold_24	retained_intron	8121621	8121799	+	asmbl_32413	none	blat.proc3825178.chain_50	1	STRG.26862.1,STRG.26862.2,STRG.26862.3,blat.proc3825178.chain_51,blat.proc3825178.chain_52,blat.proc3825178.chain_53	6
scaffold_70	alternate_exon	7846	7890	-	asmbl_51599,asmbl_51600	none	STRG.30108.1,blat.proc3825178.chain_3226	2	Trinity_GG_16893_c0_g1_i1,blat.proc3825162.chain_3271,blat.proc3825162.chain_3272	3
scaffold_20	alt_acceptor	5907844	5907845	+	asmbl_26645	none	STRG.23196.3	1	STRG.23196.1	1
scaffold_25	spliced_intron	6303359	6303523	+	asmbl_33609,asmbl_33614	none	STRG.27515.1,blat.proc3825178.chain_557	2	STRG.27515.2,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	6
scaffold_13	skipped_exon	8348099	8348676	+	asmbl_11122	none	STRG.16126.2,blat.proc3825172.chain_910	2	STRG.16126.1,blat.proc3825172.chain_911	2
scaffold_14	alt_acceptor	11672372	11672373	+	asmbl_12398	none	STRG.17512.1,blat.proc3825172.chain_2226	2	STRG.17512.2	1
scaffold_12	alt_donor	10391272	10391273	-	asmbl_8749	none	STRG.15015.2,blat.proc3825154.chain_3535	2	STRG.15015.1,blat.proc3825154.chain_3537	2
scaffold_7	ends_in_intron	9809847	9809847	-	asmbl_51074,asmbl_51075	none	STRG.9176.2,Trinity_GG_5169_c0_g1_i1,blat.proc3825152.chain_1539	3	STRG.9176.1	1
scaffold_15	starts_in_intron	14325536	14325536	-	asmbl_14711,asmbl_14718	none	blat.proc3825156.chain_3715,blat.proc3825156.chain_3718	2	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2
scaffold_11	ends_in_intron	11944364	11944364	-	asmbl_7050	none	Trinity_GG_7854_c8_g1_i1,blat.proc3825154.chain_2602	2	STRG.14177.4,STRG.14177.6,blat.proc3825154.chain_2596	3
scaffold_13	alternate_exon	9325388	9326093	-	asmbl_10022	none	STRG.16199.4	1	STRG.16199.1,blat.proc3825156.chain_1013	2
scaffold_10	starts_in_intron	7768295	7768295	-	asmbl_4550,asmbl_4552	none	STRG.12568.2,blat.proc3825154.chain_1150	2	STRG.12568.1,blat.proc3825154.chain_1149	2
scaffold_17	alt_acceptor	11568153	11568154	+	asmbl_19236	none	STRG.20703.3	1	STRG.20703.2	1
scaffold_12	alternate_exon	1972283	1973560	-	asmbl_8308	none	STRG.14484.1,blat.proc3825154.chain_2926	2	STRG.14484.2	1
scaffold_20	alt_donor	11098905	11098906	+	asmbl_27009	none	STRG.23628.2,blat.proc3825176.chain_813	2	STRG.23628.1,blat.proc3825176.chain_814	2
scaffold_2	alt_acceptor	6633150	6633151	-	asmbl_23213,asmbl_23214	none	STRG.2030.2,STRG.2030.3	2	STRG.2030.1,Trinity_GG_1127_c0_g1_i1,blat.proc3825148.chain_2032,blat.proc3825148.chain_2033,blat.proc3825148.chain_2034,blat.proc3825148.chain_2035,blat.proc3825148.chain_2037	7
scaffold_12	starts_in_intron	6385004	6385004	+	asmbl_7676	none	Trinity_GG_25414_c0_g1_i2,blat.proc3825170.chain_3217	2	STRG.14736.1,blat.proc3825170.chain_3218	2
scaffold_13	retained_intron	2334729	2334832	+	asmbl_10610	none	STRG.15564.7	1	STRG.15564.3,STRG.15564.5,blat.proc3825172.chain_224,blat.proc3825172.chain_230	4
scaffold_1	alt_acceptor	3645962	3645963	+	asmbl_1623	none	STRG.233.1,blat.proc3825164.chain_360	2	STRG.233.2,blat.proc3825164.chain_361	2
scaffold_28	alt_donor	3821705	3821706	-	asmbl_38173,asmbl_38177	none	STRG.29582.1,blat.proc3825162.chain_2742,blat.proc3825162.chain_2745	3	STRG.29582.3,blat.proc3825162.chain_2743	2
scaffold_3	starts_in_intron	8171686	8171686	-	asmbl_39016	none	blat.proc3825148.chain_3287	1	STRG.3440.1	1
scaffold_2	spliced_intron	7218817	7218918	+	asmbl_24539,asmbl_24544,asmbl_24549,asmbl_24550,asmbl_24551	none	STRG.2054.1,STRG.2054.5,Trinity_GG_18495_c0_g1_i13,Trinity_GG_18495_c0_g1_i2,Trinity_GG_18495_c0_g1_i4,blat.proc3825164.chain_2266,blat.proc3825164.chain_2267,blat.proc3825164.chain_2270,blat.proc3825164.chain_2274	9	STRG.2054.6,Trinity_GG_18495_c0_g1_i12,blat.proc3825164.chain_2269	3
scaffold_22	ends_in_intron	8788780	8788780	-	asmbl_29503	none	blat.proc3825160.chain_2405	1	STRG.25234.1	1
scaffold_9	ends_in_intron	10916853	10916853	+	asmbl_54310	none	Trinity_GG_23646_c0_g2_i1,blat.proc3825170.chain_173	2	STRG.11408.1,STRG.11408.2,blat.proc3825170.chain_168,blat.proc3825170.chain_169,blat.proc3825170.chain_170,blat.proc3825170.chain_171,blat.proc3825170.chain_172	7
scaffold_2	spliced_intron	6765125	6765361	+	asmbl_24490,asmbl_24491,asmbl_24494,asmbl_24495	none	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	9	Trinity_GG_18452_c0_g1_i2,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i9,blat.proc3825164.chain_2146,blat.proc3825164.chain_2147,blat.proc3825164.chain_2149	6
scaffold_13	alt_acceptor	14175210	14175211	+	asmbl_11432,asmbl_11434	none	STRG.16460.2,STRG.16460.5,Trinity_GG_26388_c0_g1_i7,Trinity_GG_26388_c0_g1_i9,blat.proc3825172.chain_1264,blat.proc3825172.chain_1269	6	Trinity_GG_26388_c0_g1_i2,blat.proc3825172.chain_1270	2
scaffold_27	alt_donor	980879	980880	+	asmbl_35979	none	STRG.28596.2	1	STRG.28596.1,Trinity_GG_33132_c0_g1_i3,blat.proc3825178.chain_1711	3
scaffold_3	alt_acceptor	16186887	16186888	+	asmbl_40611	none	STRG.3901.1,blat.proc3825166.chain_363	2	STRG.3901.2	1
scaffold_21	spliced_intron	5171404	5171760	-	asmbl_27621,asmbl_27623,asmbl_27624,asmbl_27625,asmbl_27627	none	STRG.24060.1,blat.proc3825160.chain_1237,blat.proc3825160.chain_1238,blat.proc3825160.chain_1239,blat.proc3825160.chain_1241,blat.proc3825160.chain_1242	6	blat.proc3825160.chain_1240	1
scaffold_3	alt_donor	7709074	7709075	-	asmbl_38976,asmbl_38978,asmbl_38979,asmbl_38981,asmbl_38983	none	STRG.3368.1,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3201,blat.proc3825148.chain_3203	5	blat.proc3825148.chain_3197,blat.proc3825148.chain_3202,blat.proc3825148.chain_3204	3
scaffold_7	ends_in_intron	4055977	4055977	+	asmbl_49718	none	blat.proc3825168.chain_1258	1	STRG.8806.1,blat.proc3825168.chain_1257	2
scaffold_13	alternate_exon	11258802	11258871	+	asmbl_11258	none	STRG.16290.2,blat.proc3825172.chain_1072	2	STRG.16290.1	1
scaffold_5	starts_in_intron	8405075	8405075	+	asmbl_45546	none	Trinity_GG_20668_c0_g1_i2,blat.proc3825166.chain_2362	2	STRG.6183.1,blat.proc3825166.chain_2363	2
scaffold_7	spliced_intron	6580953	6581051	-	asmbl_50921	none	STRG.8930.2	1	STRG.8930.1,blat.proc3825152.chain_1365	2
scaffold_7	spliced_intron	2490307	2490441	+	asmbl_49647,asmbl_49648,asmbl_49649	none	blat.proc3825168.chain_1193,blat.proc3825168.chain_1194,blat.proc3825168.chain_1195	3	STRG.8684.1,STRG.8684.2,Trinity_GG_22100_c0_g1_i6	3
scaffold_12	spliced_intron	4204687	4205332	+	asmbl_7588	none	STRG.14600.3	1	STRG.14600.1,Trinity_GG_25384_c0_g1_i2,blat.proc3825170.chain_3172	3
scaffold_15	skipped_exon	7792749	7793647	+	asmbl_15299	none	STRG.18354.1,blat.proc3825172.chain_3026	2	STRG.18354.2,blat.proc3825172.chain_3027,blat.proc3825172.chain_3028	3
scaffold_9	spliced_intron	11794319	11794485	-	asmbl_55306,asmbl_55309	none	STRG.11496.1,blat.proc3825152.chain_3684,blat.proc3825152.chain_3686	3	STRG.11496.3,blat.proc3825152.chain_3685	2
scaffold_3	retained_exon	6218492	6218585	-	asmbl_38930	none	STRG.3267.2	1	STRG.3267.1	1
scaffold_26	retained_intron	9314784	9314931	+	asmbl_35226	none	blat.proc3825178.chain_1610	1	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1617,blat.proc3825178.chain_1618	8
scaffold_25	alternate_exon	3288469	3292204	-	asmbl_34120	none	STRG.27284.2,Trinity_GG_15289_c0_g1_i1,Trinity_GG_15289_c0_g1_i2,blat.proc3825162.chain_646,blat.proc3825162.chain_647,blat.proc3825162.chain_656	6	STRG.27284.6,STRG.27284.7,blat.proc3825162.chain_658	3
scaffold_27	alt_donor	9995059	9995060	+	asmbl_36559	none	STRG.29231.1	1	STRG.29231.2,blat.proc3825178.chain_2433	2
scaffold_8	skipped_exon	15173646	15174113	-	asmbl_52331	none	STRG.10550.2	1	STRG.10550.1,blat.proc3825152.chain_2806	2
scaffold_18	alt_acceptor	1877345	1877346	+	asmbl_20391	none	STRG.21076.3	1	STRG.21076.1,STRG.21076.2,blat.proc3825174.chain_1963	3
scaffold_8	starts_in_intron	4836575	4836575	-	asmbl_51801,asmbl_51807	none	STRG.9947.1,blat.proc3825152.chain_2166,blat.proc3825152.chain_2169	3	STRG.9947.2,blat.proc3825152.chain_2167,blat.proc3825152.chain_2168	3
scaffold_10	starts_in_intron	9720366	9720366	-	asmbl_4703	none	blat.proc3825154.chain_1301	1	STRG.12704.1,blat.proc3825154.chain_1300	2
scaffold_19	alt_donor	7426060	7426061	+	asmbl_21454	none	STRG.22223.2	1	STRG.22223.1,blat.proc3825174.chain_3216	2
scaffold_25	ends_in_intron	9119525	9119525	+	asmbl_33784	none	blat.proc3825178.chain_861	1	STRG.27725.3,STRG.27725.4,STRG.27725.5,STRG.27725.6	4
scaffold_4	alt_acceptor	1972617	1972618	-	asmbl_42383	none	blat.proc3825150.chain_423	1	blat.proc3825150.chain_424	1
scaffold_16	alt_acceptor	314197	314198	-	asmbl_16852,asmbl_16854	none	STRG.19022.1,STRG.19022.3	2	STRG.19022.2,STRG.19022.4	2
scaffold_298	retained_exon	1776	1793	-	asmbl_38660	none	STRG.30263.2	1	STRG.30263.1	1
scaffold_13	alt_acceptor	6802294	6802295	+	asmbl_10975,asmbl_10978	none	STRG.15970.1,blat.proc3825172.chain_720,blat.proc3825172.chain_723	3	STRG.15970.2,blat.proc3825172.chain_721	2
scaffold_1	alt_acceptor	12050650	12050651	-	asmbl_679,asmbl_682	none	STRG.817.1,blat.proc3825148.chain_752,blat.proc3825148.chain_753	3	STRG.817.2,STRG.817.3	2
scaffold_11	alt_donor	7351152	7351153	+	asmbl_5667	none	STRG.13747.1,Trinity_GG_24880_c0_g1_i1,blat.proc3825170.chain_2278	3	STRG.13747.2	1
scaffold_25	alternate_exon	2089253	2089438	-	asmbl_34059	none	STRG.27219.2	1	STRG.27219.1	1
scaffold_12	ends_in_intron	2578754	2578754	+	asmbl_7500	none	STRG.14503.2	1	STRG.14503.1,Trinity_GG_25328_c1_g1_i1,blat.proc3825170.chain_3055	3
scaffold_28	starts_in_intron	7275195	7275195	-	asmbl_38384	none	STRG.29796.4,blat.proc3825162.chain_3019	2	STRG.29796.3	1
scaffold_21	alternate_exon	5518851	5520018	-	asmbl_27667	none	blat.proc3825160.chain_1261	1	STRG.24083.1	1
scaffold_16	ends_in_intron	7055706	7055706	+	asmbl_16316	none	Trinity_GG_27922_c0_g1_i1,blat.proc3825174.chain_296	2	STRG.19380.1,blat.proc3825174.chain_297	2
scaffold_3	alt_acceptor	14668720	14668721	+	asmbl_40541	none	STRG.3810.2,Trinity_GG_19449_c0_g1_i1,blat.proc3825166.chain_299	3	STRG.3810.1,STRG.3810.3,Trinity_GG_19449_c0_g1_i3,blat.proc3825166.chain_300	4
scaffold_12	alt_donor	10018822	10018823	-	asmbl_8716	none	STRG.14977.1,blat.proc3825154.chain_3474	2	blat.proc3825154.chain_3475	1
scaffold_3	ends_in_intron	13799231	13799231	-	asmbl_39303	none	Trinity_GG_2036_c0_g1_i4,blat.proc3825148.chain_3596	2	STRG.3726.1,STRG.3726.2,blat.proc3825148.chain_3595	3
scaffold_21	retained_exon	6512237	6512322	+	asmbl_28658	none	STRG.24176.1,blat.proc3825176.chain_1395	2	blat.proc3825176.chain_1398	1
scaffold_16	alternate_exon	1248205	1249035	-	asmbl_16935	none	STRG.19087.4,blat.proc3825158.chain_226	2	Trinity_GG_10709_c1_g1_i1,blat.proc3825158.chain_227	2
scaffold_4	alt_acceptor	5651885	5651886	-	asmbl_42617	none	Trinity_GG_2475_c0_g1_i10,blat.proc3825150.chain_661	2	STRG.4472.1,STRG.4472.2,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_665,blat.proc3825150.chain_666,blat.proc3825150.chain_667,blat.proc3825150.chain_668	9
scaffold_5	spliced_intron	11802717	11802845	+	asmbl_45760,asmbl_45762	none	STRG.6437.1,Trinity_GG_20826_c0_g1_i2,blat.proc3825166.chain_2655	3	blat.proc3825166.chain_2657	1
scaffold_1	ends_in_intron	4918057	4918057	-	asmbl_224	none	STRG.302.2,blat.proc3825148.chain_262	2	STRG.302.1	1
scaffold_13	alt_donor	9240001	9240002	+	asmbl_11182,asmbl_11183	none	STRG.16182.2,blat.proc3825172.chain_942	2	STRG.16182.1,blat.proc3825172.chain_941	2
scaffold_26	alt_acceptor	9044197	9044198	+	asmbl_35201,asmbl_35204	none	STRG.28471.2,Trinity_GG_33066_c0_g1_i2,blat.proc3825178.chain_1594	3	STRG.28471.1,Trinity_GG_33066_c0_g1_i3,blat.proc3825178.chain_1595	3
scaffold_1	alt_donor	4226072	4226073	+	asmbl_1644	none	blat.proc3825164.chain_380	1	STRG.254.1,blat.proc3825164.chain_377,blat.proc3825164.chain_379	3
scaffold_17	skipped_exon	6370660	6373383	+	asmbl_18848	none	STRG.20317.2	1	STRG.20317.1	1
scaffold_12	starts_in_intron	13036142	13036142	-	asmbl_8906	none	Trinity_GG_8483_c0_g1_i1,blat.proc3825154.chain_3685	2	STRG.15190.1,Trinity_GG_8483_c0_g1_i2,blat.proc3825154.chain_3684	3
scaffold_24	retained_exon	4318956	4319024	+	asmbl_32189	none	STRG.26600.1	1	STRG.26600.2	1
scaffold_6	ends_in_intron	18837144	18837144	+	asmbl_47855	none	blat.proc3825168.chain_961	1	STRG.8556.1,STRG.8556.2,STRG.8556.3,STRG.8556.4,STRG.8556.5,STRG.8556.6,Trinity_GG_21987_c0_g1_i5,blat.proc3825168.chain_959,blat.proc3825168.chain_960,blat.proc3825168.chain_962,blat.proc3825168.chain_963	11
scaffold_4	retained_intron	12571017	12571399	-	asmbl_42932	none	blat.proc3825150.chain_1085	1	STRG.4898.2,blat.proc3825150.chain_1086	2
scaffold_9	spliced_intron	9547344	9547423	+	asmbl_54203	none	STRG.11315.1,blat.proc3825170.chain_50	2	blat.proc3825170.chain_51	1
scaffold_22	alt_donor	11522789	11522790	+	asmbl_30399	none	STRG.25500.1,Trinity_GG_31383_c1_g1_i1,blat.proc3825176.chain_2486	3	STRG.25500.2,blat.proc3825176.chain_2485	2
scaffold_12	spliced_intron	7626418	7626858	-	asmbl_8611	none	blat.proc3825154.chain_3291	1	STRG.14843.1,Trinity_GG_8248_c0_g1_i2,blat.proc3825154.chain_3290	3
scaffold_18	ends_in_intron	4573909	4573909	+	asmbl_20530	none	blat.proc3825174.chain_2215	1	STRG.21248.1,STRG.21248.2,blat.proc3825174.chain_2216,blat.proc3825174.chain_2217,blat.proc3825174.chain_2218,blat.proc3825174.chain_2219	6
scaffold_1	retained_intron	20135302	20135349	-	asmbl_1172,asmbl_1177	none	STRG.1386.1,Trinity_GG_765_c0_g1_i2	2	STRG.1386.5,STRG.1386.7	2
scaffold_23	retained_intron	2604317	2604475	-	asmbl_30751	none	blat.proc3825160.chain_2902	1	STRG.25724.1,blat.proc3825160.chain_2901	2
scaffold_25	starts_in_intron	5430084	5430084	+	asmbl_33564	none	Trinity_GG_32392_c0_g1_i6,blat.proc3825178.chain_460	2	STRG.27454.1,blat.proc3825178.chain_458,blat.proc3825178.chain_459	3
scaffold_10	alt_donor	14699395	14699396	+	asmbl_3656	none	blat.proc3825170.chain_1626	1	STRG.13024.1,STRG.13024.2,blat.proc3825170.chain_1624,blat.proc3825170.chain_1625,blat.proc3825170.chain_1628	5
scaffold_20	retained_intron	5922950	5923078	-	asmbl_25789	none	STRG.23199.1	1	STRG.23199.2,STRG.23199.3,STRG.23199.4,blat.proc3825160.chain_276,blat.proc3825160.chain_278,blat.proc3825160.chain_280,blat.proc3825160.chain_281	7
scaffold_28	alternate_exon	4204544	4204882	+	asmbl_37518,asmbl_37519	none	STRG.29616.4,STRG.29616.5,Trinity_GG_33739_c1_g1_i1,blat.proc3825178.chain_2815,blat.proc3825178.chain_2816	5	STRG.29616.1	1
scaffold_52	alt_acceptor	15133	15134	+	asmbl_46533,asmbl_46534	none	STRG.30061.1,blat.proc3825178.chain_3187,blat.proc3825178.chain_3188	3	STRG.30061.2,STRG.30061.3,blat.proc3825178.chain_3185,blat.proc3825178.chain_3186	4
scaffold_3	ends_in_intron	6218919	6218919	-	asmbl_38925,asmbl_38931	none	STRG.3267.4,STRG.3267.5	2	STRG.3267.1,STRG.3267.2	2
scaffold_15	spliced_intron	12421366	12422732	+	asmbl_15564	none	STRG.18696.2	1	blat.proc3825172.chain_3323	1
scaffold_21	alternate_exon	8131428	8133935	-	asmbl_27891	none	STRG.24349.5,blat.proc3825160.chain_1508	2	blat.proc3825160.chain_1510	1
scaffold_1	starts_in_intron	9896297	9896297	-	asmbl_562	none	blat.proc3825148.chain_619	1	STRG.664.1,STRG.664.2,blat.proc3825148.chain_620,blat.proc3825148.chain_621	4
scaffold_13	alternate_exon	14485873	14485911	-	asmbl_10194	none	STRG.16499.2	1	STRG.16499.1	1
scaffold_10	alt_acceptor	17095491	17095492	-	asmbl_5033,asmbl_5034	none	blat.proc3825154.chain_1700,blat.proc3825154.chain_1701	2	STRG.13151.1,blat.proc3825154.chain_1699	2
scaffold_21	spliced_intron	1054629	1054775	-	asmbl_27377,asmbl_27382	none	STRG.23787.4,Trinity_GG_13262_c0_g1_i1,blat.proc3825160.chain_925	3	STRG.23787.1,STRG.23787.2,STRG.23787.3,Trinity_GG_13262_c0_g1_i12,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922,blat.proc3825160.chain_924	7
scaffold_21	starts_in_intron	5774359	5774359	-	asmbl_27698	none	blat.proc3825160.chain_1204	1	STRG.24114.2,STRG.24114.3,blat.proc3825160.chain_1201,blat.proc3825160.chain_1203	4
scaffold_10	ends_in_intron	13788474	13788474	+	asmbl_3624	none	STRG.12979.2	1	STRG.12979.1	1
scaffold_17	alternate_exon	6000826	6001133	+	asmbl_18837,asmbl_18838	none	STRG.20285.2,STRG.20285.5	2	STRG.20285.1,blat.proc3825174.chain_1139	2
scaffold_8	alternate_exon	11049585	11049650	+	asmbl_53190	none	STRG.10316.2,blat.proc3825168.chain_2892	2	STRG.10316.1,blat.proc3825168.chain_2890,blat.proc3825168.chain_2891	3
scaffold_8	spliced_intron	6160014	6160658	-	asmbl_51862,asmbl_51867,asmbl_51869	none	STRG.10030.1,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2276	4	STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2275	6
scaffold_15	alt_donor	7804187	7804188	-	asmbl_14312	none	blat.proc3825156.chain_3205	1	STRG.18360.1,Trinity_GG_10324_c1_g1_i1,blat.proc3825156.chain_3204,blat.proc3825156.chain_3207	4
scaffold_21	retained_intron	406429	406790	-	asmbl_27315,asmbl_27316	none	Trinity_GG_13230_c0_g1_i5,Trinity_GG_13230_c0_g1_i6,blat.proc3825160.chain_867,blat.proc3825160.chain_868	4	STRG.23739.1,Trinity_GG_13230_c0_g1_i1,Trinity_GG_13230_c0_g1_i3,Trinity_GG_13230_c0_g1_i4,Trinity_GG_13230_c0_g1_i7,Trinity_GG_13230_c0_g1_i8,blat.proc3825160.chain_862,blat.proc3825160.chain_863,blat.proc3825160.chain_864,blat.proc3825160.chain_865,blat.proc3825160.chain_866	11
scaffold_12	retained_intron	7670363	7670489	+	asmbl_7786,asmbl_7788	none	Trinity_GG_25521_c0_g1_i4,blat.proc3825170.chain_3399,blat.proc3825170.chain_3401	3	STRG.14853.1,STRG.14853.2,Trinity_GG_25521_c0_g1_i3,blat.proc3825170.chain_3398,blat.proc3825170.chain_3400	5
scaffold_1	alternate_exon	1326311	1326358	+	asmbl_1473	none	STRG.78.2,blat.proc3825164.chain_194	2	STRG.78.1	1
scaffold_8	ends_in_intron	8179049	8179049	+	asmbl_53011	none	blat.proc3825168.chain_2695	1	STRG.10103.1,STRG.10103.2,STRG.10103.3,STRG.10103.4,blat.proc3825168.chain_2696,blat.proc3825168.chain_2698	6
scaffold_2208	retained_intron	1171	1315	-	asmbl_30544	none	Trinity_GG_17237_c0_g1_i2,Trinity_GG_34091_c0_g1_i1,blat.proc3825162.chain_3734	3	STRG.30724.1,blat.proc3825162.chain_3735	2
scaffold_19	starts_in_intron	3209171	3209171	+	asmbl_21311	none	Trinity_GG_29487_c0_g1_i4,blat.proc3825174.chain_3041	2	STRG.22012.1,STRG.22012.2,STRG.22012.3,blat.proc3825174.chain_3040,blat.proc3825174.chain_3042,blat.proc3825174.chain_3043,blat.proc3825174.chain_3044	7
scaffold_20	alt_acceptor	394856	394857	-	asmbl_25493	none	STRG.22735.1,Trinity_GG_12659_c0_g1_i4,blat.proc3825158.chain_3560	3	STRG.22735.2,blat.proc3825158.chain_3557	2
scaffold_500	retained_intron	4922	5037	+	asmbl_46497	none	blat.proc3825178.chain_3442	1	blat.proc3825178.chain_3447	1
scaffold_16	spliced_intron	2172434	2173787	+	asmbl_16112	none	STRG.19116.2,blat.proc3825172.chain_3725	2	STRG.19116.1,Trinity_GG_27764_c0_g1_i6,blat.proc3825172.chain_3723,blat.proc3825172.chain_3724	4
scaffold_15	retained_intron	12000429	12000658	-	asmbl_14549,asmbl_14550	none	Trinity_GG_10485_c0_g1_i4,blat.proc3825156.chain_3532,blat.proc3825156.chain_3533	3	STRG.18639.2,STRG.18639.3,STRG.18639.6,Trinity_GG_10485_c0_g1_i3,Trinity_GG_10485_c0_g1_i6,blat.proc3825156.chain_3529,blat.proc3825156.chain_3531	7
scaffold_8	spliced_intron	6161958	6162463	-	asmbl_51869,asmbl_51870	none	STRG.10030.4,blat.proc3825152.chain_2276	2	blat.proc3825152.chain_2270	1
scaffold_10	retained_intron	8319997	8320745	-	asmbl_4574	none	STRG.12589.2	1	STRG.12589.1	1
scaffold_19	starts_in_intron	5457887	5457887	-	asmbl_22164	none	blat.proc3825158.chain_2973	1	STRG.22108.1,STRG.22108.2,blat.proc3825158.chain_2974,blat.proc3825158.chain_2975	4
scaffold_5	alt_donor	3591555	3591556	-	asmbl_43922,asmbl_43925,asmbl_43926	none	STRG.5831.3,STRG.5831.4,STRG.5831.5,blat.proc3825150.chain_2044	4	STRG.5831.1,STRG.5831.2,blat.proc3825150.chain_2046	3
scaffold_28	retained_intron	5390808	5391483	+	asmbl_37584	none	STRG.29687.4,Trinity_GG_33768_c0_g1_i8,blat.proc3825178.chain_2867	3	STRG.29687.3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866	3
scaffold_13	alt_acceptor	3593989	3593990	+	asmbl_10716	none	STRG.15673.2,Trinity_GG_25923_c0_g1_i3,blat.proc3825172.chain_421	3	STRG.15673.1,Trinity_GG_25923_c0_g1_i1,blat.proc3825172.chain_420	3
scaffold_20	ends_in_intron	10790927	10790927	-	asmbl_26117	none	Trinity_GG_13156_c1_g1_i1,blat.proc3825160.chain_673	2	STRG.23607.1,blat.proc3825160.chain_671,blat.proc3825160.chain_672	3
scaffold_13	alt_donor	12142383	12142384	+	asmbl_11336	none	STRG.16348.1,Trinity_GG_26265_c0_g1_i1,blat.proc3825172.chain_1081	3	STRG.16348.2,Trinity_GG_26265_c0_g1_i2,blat.proc3825172.chain_1082	3
scaffold_5	starts_in_intron	14431225	14431225	+	asmbl_45932	none	Trinity_GG_20938_c0_g1_i2,blat.proc3825166.chain_2832	2	STRG.6639.1,blat.proc3825166.chain_2831	2
scaffold_13	skipped_exon	902810	904334	-	asmbl_9376,asmbl_9380,asmbl_9381,asmbl_9382,asmbl_9384,asmbl_9385	none	STRG.15470.1,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271,blat.proc3825156.chain_272	10	blat.proc3825156.chain_264	1
scaffold_24	alternate_exon	2397384	2397417	-	asmbl_32782	none	STRG.26459.1	1	STRG.26459.2,blat.proc3825160.chain_3572	2
scaffold_5	retained_intron	15513154	15513296	-	asmbl_44686	none	blat.proc3825150.chain_2947	1	STRG.6745.1,STRG.6745.2,blat.proc3825150.chain_2945	3
scaffold_5	spliced_intron	18696880	18697441	-	asmbl_44856	none	blat.proc3825150.chain_3102	1	STRG.6997.1,blat.proc3825150.chain_3103	2
scaffold_12	spliced_intron	7499766	7499934	-	asmbl_8589	none	STRG.14829.3,blat.proc3825154.chain_3327	2	STRG.14829.1,blat.proc3825154.chain_3326	2
scaffold_26	alt_acceptor	5515247	5515248	+	asmbl_35013	none	STRG.28264.2	1	STRG.28264.1,blat.proc3825178.chain_1319	2
scaffold_9	starts_in_intron	18355943	18355943	-	asmbl_55700	none	blat.proc3825154.chain_386	1	STRG.11883.1,STRG.11883.2,blat.proc3825154.chain_384,blat.proc3825154.chain_385	4
scaffold_4	spliced_intron	16577833	16578010	+	asmbl_41975,asmbl_41977,asmbl_41980	none	STRG.5236.1,STRG.5236.2,blat.proc3825166.chain_1570,blat.proc3825166.chain_1573	4	Trinity_GG_20202_c0_g1_i5,blat.proc3825166.chain_1569,blat.proc3825166.chain_1572	3
scaffold_19	alternate_exon	7577445	7584123	+	asmbl_21472	none	STRG.22236.1,blat.proc3825174.chain_3236	2	blat.proc3825174.chain_3240	1
scaffold_14	alt_donor	13601236	13601237	+	asmbl_12484,asmbl_12485	none	STRG.17648.1,STRG.17648.2	2	blat.proc3825172.chain_2301,blat.proc3825172.chain_2302	2
scaffold_1	alternate_exon	20743643	20744830	-	asmbl_1200,asmbl_1201	none	STRG.1420.1,blat.proc3825148.chain_1411	2	blat.proc3825148.chain_1414	1
scaffold_5	spliced_intron	10195750	10195849	-	asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44324,asmbl_44326,asmbl_44327	none	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2527,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531,blat.proc3825150.chain_2533	9	blat.proc3825150.chain_2532	1
scaffold_2	alt_donor	8278547	8278548	+	asmbl_24621	none	STRG.2109.1,blat.proc3825164.chain_2286	2	STRG.2109.2,blat.proc3825164.chain_2285	2
scaffold_3	alt_donor	17345489	17345490	+	asmbl_40670	none	STRG.3963.2	1	STRG.3963.1,blat.proc3825166.chain_470,blat.proc3825166.chain_471	3
scaffold_3	ends_in_intron	17328554	17328554	+	asmbl_40665	none	Trinity_GG_19543_c0_g1_i3,blat.proc3825166.chain_476	2	STRG.3961.1	1
scaffold_23	alt_acceptor	330708	330709	-	asmbl_30586	none	STRG.25551.2	1	STRG.25551.1,STRG.25551.3,blat.proc3825160.chain_2698,blat.proc3825160.chain_2699	4
scaffold_6	spliced_intron	12413720	12414317	-	asmbl_48804	none	STRG.7996.3	1	STRG.7996.1,STRG.7996.2,STRG.7996.4,STRG.7996.5,blat.proc3825152.chain_392,blat.proc3825152.chain_393,blat.proc3825152.chain_394	7
scaffold_7	ends_in_intron	12418120	12418120	-	asmbl_51219	none	blat.proc3825152.chain_1702	1	STRG.9346.1,blat.proc3825152.chain_1701,blat.proc3825152.chain_1704,blat.proc3825152.chain_1705	4
scaffold_19	retained_exon	12107556	12107576	-	asmbl_22457,asmbl_22461	none	STRG.22539.4,STRG.22539.5,blat.proc3825158.chain_3192	3	STRG.22539.1,blat.proc3825158.chain_3191	2
scaffold_13	starts_in_intron	675375	675375	-	asmbl_9369	none	blat.proc3825156.chain_319	1	STRG.15455.1	1
scaffold_17	retained_intron	10097780	10097808	+	asmbl_19176	none	Trinity_GG_28571_c0_g1_i1,Trinity_GG_28571_c0_g1_i2,blat.proc3825174.chain_1416	3	STRG.20627.1	1
scaffold_8	spliced_intron	8901327	8902097	-	asmbl_51982	none	STRG.10146.3	1	STRG.10146.2,blat.proc3825152.chain_2431	2
scaffold_10	alternate_exon	17157412	17157572	-	asmbl_5036	none	STRG.13164.2,blat.proc3825154.chain_1754	2	STRG.13164.1,blat.proc3825154.chain_1757	2
scaffold_6	skipped_exon	15362089	15363299	+	asmbl_47659	none	STRG.8284.1,blat.proc3825168.chain_768	2	blat.proc3825168.chain_767	1
scaffold_20	skipped_exon	11566279	11568474	+	asmbl_27079	none	blat.proc3825176.chain_868	1	STRG.23663.2,Trinity_GG_30414_c0_g1_i1,blat.proc3825176.chain_870	3
scaffold_21	retained_intron	5169771	5169934	-	asmbl_27624,asmbl_27625	none	blat.proc3825160.chain_1238,blat.proc3825160.chain_1239	2	STRG.24060.1,blat.proc3825160.chain_1237,blat.proc3825160.chain_1240,blat.proc3825160.chain_1241,blat.proc3825160.chain_1242	5
scaffold_3	spliced_intron	7917839	7917894	-	asmbl_38999	none	STRG.3377.3	1	blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	2
scaffold_27	alt_donor	4944507	4944508	+	asmbl_36326,asmbl_36330	none	STRG.28932.3,blat.proc3825178.chain_2145	2	STRG.28932.1,STRG.28932.2,STRG.28932.4,blat.proc3825178.chain_2146,blat.proc3825178.chain_2147	5
scaffold_22	starts_in_intron	11642249	11642249	-	asmbl_29692	none	Trinity_GG_14249_c0_g1_i2,blat.proc3825160.chain_2640	2	STRG.25514.1,Trinity_GG_14249_c0_g1_i1,blat.proc3825160.chain_2641	3
scaffold_1	starts_in_intron	14215325	14215325	+	asmbl_2355	none	blat.proc3825164.chain_1134	1	STRG.1012.1,blat.proc3825164.chain_1132,blat.proc3825164.chain_1133	3
scaffold_340	retained_intron	2802	2916	+	asmbl_41010	none	STRG.30295.4,Trinity_GG_34083_c0_g1_i8,blat.proc3825178.chain_3395	3	STRG.30295.2,STRG.30295.3,STRG.30295.5	3
scaffold_2	spliced_intron	15455311	15455409	+	asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25041,asmbl_25042,asmbl_25043	none	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811	9	blat.proc3825164.chain_2805,blat.proc3825164.chain_2812	2
scaffold_17	spliced_intron	9030443	9030964	-	asmbl_18139,asmbl_18140,asmbl_18142,asmbl_18143	none	STRG.20532.1,STRG.20532.2,STRG.20532.4,STRG.20532.5,blat.proc3825158.chain_1576	5	Trinity_GG_11556_c0_g1_i5,blat.proc3825158.chain_1574	2
scaffold_10	skipped_exon	11970189	11971545	+	asmbl_3518	none	STRG.12838.5	1	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.6	4
scaffold_28	spliced_intron	5011999	5012133	+	asmbl_37555,asmbl_37560,asmbl_37561	none	STRG.29651.1,blat.proc3825178.chain_2833,blat.proc3825178.chain_2834	3	Trinity_GG_33747_c0_g2_i4,blat.proc3825178.chain_2832	2
scaffold_14	retained_intron	13897914	13898395	+	asmbl_12515,asmbl_12516	none	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2	STRG.17673.1,STRG.17673.2,STRG.17673.3,STRG.17673.4,blat.proc3825172.chain_2390,blat.proc3825172.chain_2392	6
scaffold_20	retained_exon	2392380	2392427	+	asmbl_26484	none	STRG.22976.1	1	STRG.22976.2	1
scaffold_8	alt_acceptor	4961211	4961212	-	asmbl_51818,asmbl_51819	none	STRG.9966.2,blat.proc3825152.chain_2197,blat.proc3825152.chain_2200	3	STRG.9966.1,blat.proc3825152.chain_2198,blat.proc3825152.chain_2199	3
scaffold_11	alternate_exon	3710236	3710260	-	asmbl_6562	none	STRG.13492.3	1	Trinity_GG_7547_c1_g1_i2,blat.proc3825154.chain_2045	2
scaffold_25	ends_in_intron	3690269	3690269	+	asmbl_33454	none	blat.proc3825178.chain_417	1	STRG.27315.1,STRG.27315.3,blat.proc3825178.chain_416	3
scaffold_8	alt_acceptor	4799726	4799727	-	asmbl_51800	none	STRG.9941.2	1	STRG.9941.1,Trinity_GG_5553_c0_g1_i2,blat.proc3825152.chain_2217	3
scaffold_15	alternate_exon	4118700	4118927	-	asmbl_14126	none	Trinity_GG_10180_c0_g2_i1,blat.proc3825156.chain_2941	2	STRG.18155.1,STRG.18155.2,STRG.18155.3,STRG.18155.4,Trinity_GG_10180_c0_g1_i1,blat.proc3825156.chain_2938,blat.proc3825156.chain_2939,blat.proc3825156.chain_2940	8
scaffold_1	spliced_intron	6019056	6019228	+	asmbl_1818,asmbl_1820	none	STRG.408.1,blat.proc3825164.chain_565,blat.proc3825164.chain_567	3	blat.proc3825164.chain_566	1
scaffold_4	alt_donor	7543959	7543960	+	asmbl_41506	none	STRG.4590.1	1	STRG.4590.2,blat.proc3825166.chain_1059	2
scaffold_11	alternate_exon	12759276	12759361	-	asmbl_7099	none	STRG.14168.2,blat.proc3825154.chain_2717	2	STRG.14168.1,blat.proc3825154.chain_2716	2
scaffold_27	alt_acceptor	3099952	3099953	-	asmbl_36896	none	STRG.28794.2,blat.proc3825162.chain_2036	2	STRG.28794.1,blat.proc3825162.chain_2037	2
scaffold_7	alt_acceptor	8330180	8330181	-	asmbl_51008,asmbl_51009,asmbl_51011	none	STRG.9069.1,STRG.9069.3,blat.proc3825152.chain_1386,blat.proc3825152.chain_1389,blat.proc3825152.chain_1390,blat.proc3825152.chain_1393	6	Trinity_GG_5079_c0_g1_i10,blat.proc3825152.chain_1387	2
scaffold_6	spliced_intron	15945018	15945059	+	asmbl_47680,asmbl_47682	none	STRG.8324.3,STRG.8324.4	2	STRG.8324.1	1
scaffold_6	retained_intron	15759616	15760387	-	asmbl_49081,asmbl_49086	none	STRG.8318.2,STRG.8318.3	2	STRG.8318.1,blat.proc3825152.chain_757,blat.proc3825152.chain_758,blat.proc3825152.chain_759	4
scaffold_19	skipped_exon	857538	858547	+	asmbl_21217,asmbl_21220	none	STRG.21878.1,Trinity_GG_29375_c1_g1_i1,blat.proc3825174.chain_2855	3	STRG.21878.2,blat.proc3825174.chain_2853,blat.proc3825174.chain_2854	3
scaffold_28	alternate_exon	547394	547487	-	asmbl_37915	none	STRG.29272.2	1	STRG.29272.1,Trinity_GG_16372_c0_g1_i1,blat.proc3825162.chain_2407	3
scaffold_10	ends_in_intron	643230	643230	-	asmbl_3982	none	Trinity_GG_6661_c0_g1_i1,blat.proc3825154.chain_524	2	STRG.11946.1,blat.proc3825154.chain_525	2
scaffold_8	alt_acceptor	8901327	8901328	-	asmbl_51982	none	STRG.10146.3	1	STRG.10146.1,blat.proc3825152.chain_2432	2
scaffold_6	retained_intron	8172579	8172828	-	asmbl_48535,asmbl_48536,asmbl_48537	none	Trinity_GG_4351_c0_g1_i7,blat.proc3825152.chain_84,blat.proc3825152.chain_89	3	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_91,blat.proc3825152.chain_92	5
scaffold_3	ends_in_intron	5046427	5046427	+	asmbl_40060	none	blat.proc3825164.chain_3472	1	STRG.3202.1,blat.proc3825164.chain_3473	2
scaffold_11	alternate_exon	8719066	8719313	-	asmbl_6873	none	Trinity_GG_7765_c0_g1_i2,blat.proc3825154.chain_2440	2	STRG.13902.1,blat.proc3825154.chain_2437,blat.proc3825154.chain_2439	3
scaffold_9	alternate_exon	5078742	5078856	+	asmbl_53989,asmbl_53990,asmbl_53991	none	STRG.11088.1,STRG.11088.2,STRG.11088.3	3	STRG.11088.4	1
scaffold_12	retained_exon	7618188	7618268	-	asmbl_8605,asmbl_8607,asmbl_8609	none	STRG.14840.2,STRG.14840.3,STRG.14840.6	3	STRG.14840.1,STRG.14840.4,STRG.14840.5,blat.proc3825154.chain_3358,blat.proc3825154.chain_3359	5
scaffold_8	skipped_exon	11849733	11850658	+	asmbl_53278,asmbl_53284,asmbl_53288	none	STRG.10390.3,STRG.10390.5,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022	4	blat.proc3825168.chain_3016	1
scaffold_1	starts_in_intron	16227566	16227566	+	asmbl_2469	none	Trinity_GG_17992_c0_g1_i2,blat.proc3825164.chain_1302	2	STRG.1133.1,STRG.1133.2,blat.proc3825164.chain_1301,blat.proc3825164.chain_1303	4
scaffold_21	spliced_intron	256742	257073	-	asmbl_27283,asmbl_27284,asmbl_27287,asmbl_27288,asmbl_27290,asmbl_27295,asmbl_27296	none	STRG.23725.1,STRG.23725.2,STRG.23725.6,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_813	8	STRG.23725.3,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_808,blat.proc3825160.chain_810	5
scaffold_22	spliced_intron	323190	323437	+	asmbl_29839,asmbl_29842	none	STRG.24686.3,blat.proc3825176.chain_1816	2	STRG.24686.2	1
scaffold_10	alt_donor	2765191	2765192	-	asmbl_4124,asmbl_4125	none	STRG.12095.2,STRG.12095.3,blat.proc3825154.chain_648,blat.proc3825154.chain_649	4	STRG.12095.1,blat.proc3825154.chain_647	2
scaffold_12	alt_donor	12397457	12397458	-	asmbl_8879	none	STRG.15147.1,blat.proc3825154.chain_3647	2	STRG.15147.2,STRG.15147.3	2
scaffold_9	retained_intron	11825456	11825553	-	asmbl_55316	none	STRG.11502.5,blat.proc3825152.chain_3635	2	STRG.11502.1,blat.proc3825152.chain_3634	2
scaffold_28	alt_donor	2893287	2893288	+	asmbl_37417	none	STRG.29481.2,blat.proc3825178.chain_2627	2	STRG.29481.1,blat.proc3825178.chain_2626	2
scaffold_11	skipped_exon	9130809	9131505	+	asmbl_5868,asmbl_5869,asmbl_5871	none	STRG.13952.1,STRG.13952.2,blat.proc3825170.chain_2531,blat.proc3825170.chain_2532	4	blat.proc3825170.chain_2529,blat.proc3825170.chain_2533	2
scaffold_14	alt_acceptor	8046533	8046534	+	asmbl_12202	none	STRG.17225.2	1	STRG.17225.1,blat.proc3825172.chain_1998	2
scaffold_1	retained_intron	12450440	12450558	+	asmbl_2223	none	Trinity_GG_17840_c0_g1_i9,blat.proc3825164.chain_1026	2	STRG.859.1,STRG.859.2,Trinity_GG_17840_c0_g1_i2,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1027,blat.proc3825164.chain_1030,blat.proc3825164.chain_1031	7
scaffold_5	retained_intron	10296210	10296333	-	asmbl_44340	none	blat.proc3825150.chain_2557	1	STRG.6332.1,STRG.6332.2,blat.proc3825150.chain_2558,blat.proc3825150.chain_2559	4
scaffold_27	alt_donor	9435775	9435776	-	asmbl_37139	none	STRG.29189.1,blat.proc3825162.chain_2345	2	STRG.29189.4,Trinity_GG_16335_c0_g1_i3,blat.proc3825162.chain_2346	3
scaffold_9	alt_donor	12012109	12012110	+	asmbl_54407	none	STRG.11527.2	1	STRG.11527.1	1
scaffold_1	starts_in_intron	13041160	13041160	+	asmbl_2300	none	blat.proc3825164.chain_1112	1	STRG.939.1,blat.proc3825164.chain_1113	2
scaffold_17	alternate_exon	10054657	10054785	-	asmbl_18229	none	STRG.20621.2	1	STRG.20621.1,blat.proc3825158.chain_1671,blat.proc3825158.chain_1672	3
scaffold_2	starts_in_intron	17610875	17610875	+	asmbl_25187,asmbl_25189	none	STRG.2653.3,blat.proc3825164.chain_2944	2	STRG.2653.1,STRG.2653.2,blat.proc3825164.chain_2942,blat.proc3825164.chain_2943	4
scaffold_25	alt_donor	8707410	8707411	+	asmbl_33751	none	STRG.27702.2,blat.proc3825178.chain_766,blat.proc3825178.chain_770	3	STRG.27702.1,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_763,blat.proc3825178.chain_768	4
scaffold_18	starts_in_intron	7682139	7682139	+	asmbl_20781	none	Trinity_GG_29179_c0_g2_i1,blat.proc3825174.chain_2520	2	STRG.21474.1,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	5
scaffold_3	spliced_intron	19885475	19886465	-	asmbl_39673	none	blat.proc3825150.chain_249	1	STRG.4100.3,Trinity_GG_2243_c1_g1_i2,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_245,blat.proc3825150.chain_248	5
scaffold_23	alt_acceptor	1119985	1119986	+	asmbl_31305	none	STRG.25591.1,blat.proc3825176.chain_2551	2	STRG.25591.2,blat.proc3825176.chain_2552	2
scaffold_7	alt_acceptor	10409923	10409924	+	asmbl_50123	none	STRG.9223.4	1	STRG.9223.2,STRG.9223.3,blat.proc3825168.chain_1675	3
scaffold_1	alternate_exon	16714640	16714765	-	asmbl_1014	none	Trinity_GG_569_c0_g1_i3,blat.proc3825148.chain_1082	2	STRG.1177.1,STRG.1177.2,STRG.1177.3,STRG.1177.4,blat.proc3825148.chain_1083,blat.proc3825148.chain_1084	6
scaffold_15	alt_donor	13055955	13055956	-	asmbl_14609	none	STRG.18743.1,blat.proc3825156.chain_3601	2	STRG.18743.2,blat.proc3825156.chain_3600	2
scaffold_9	retained_intron	7025897	7025977	+	asmbl_54123	none	Trinity_GG_23573_c1_g1_i1,blat.proc3825170.chain_12	2	STRG.11215.1,blat.proc3825170.chain_11	2
scaffold_16	starts_in_intron	9556116	9556116	+	asmbl_16491	none	Trinity_GG_27976_c0_g1_i1,blat.proc3825174.chain_392	2	STRG.19552.1,blat.proc3825174.chain_394	2
scaffold_15	retained_intron	4117643	4117724	-	asmbl_14122,asmbl_14124	none	STRG.18155.1,STRG.18155.3,Trinity_GG_10180_c0_g1_i1,blat.proc3825156.chain_2938	4	STRG.18155.4	1
scaffold_16	retained_intron	14553404	14553521	+	asmbl_16687	none	Trinity_GG_28180_c0_g1_i1,blat.proc3825174.chain_731	2	STRG.19851.1,STRG.19851.2,STRG.19851.3,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i3,Trinity_GG_28180_c0_g1_i4,blat.proc3825174.chain_729,blat.proc3825174.chain_730,blat.proc3825174.chain_733	9
scaffold_28	ends_in_intron	3245892	3245892	+	asmbl_37463	none	Trinity_GG_33656_c0_g2_i1,blat.proc3825178.chain_2662	2	STRG.29544.1,STRG.29544.2	2
scaffold_3	ends_in_intron	12703717	12703717	-	asmbl_39228	none	STRG.3665.3,Trinity_GG_1993_c1_g1_i1,blat.proc3825148.chain_3521	3	STRG.3665.1,STRG.3665.2,blat.proc3825148.chain_3520	3
scaffold_1	skipped_exon	13883297	13885119	-	asmbl_856	none	STRG.996.4	1	STRG.996.1,STRG.996.3,blat.proc3825148.chain_1003,blat.proc3825148.chain_1004	4
scaffold_28	ends_in_intron	2263689	2263689	-	asmbl_38030	none	blat.proc3825162.chain_2575	1	STRG.29401.1,STRG.29401.2,STRG.29401.3,blat.proc3825162.chain_2576,blat.proc3825162.chain_2577,blat.proc3825162.chain_2578,blat.proc3825162.chain_2579	7
scaffold_21	alt_acceptor	11903453	11903454	+	asmbl_28944	none	STRG.24644.2	1	STRG.24644.1	1
scaffold_4	retained_exon	18530187	18530230	-	asmbl_43379	none	STRG.5456.2	1	STRG.5456.1	1
scaffold_21	skipped_exon	2952933	2953416	+	asmbl_28428	none	STRG.23920.1,blat.proc3825176.chain_1159	2	STRG.23920.2	1
scaffold_19	alt_acceptor	13007841	13007842	+	asmbl_21835,asmbl_21838,asmbl_21840,asmbl_21843	none	STRG.22623.1,Trinity_GG_29821_c0_g1_i14,Trinity_GG_29821_c0_g1_i5,Trinity_GG_29821_c0_g1_i6,Trinity_GG_29821_c0_g1_i8,blat.proc3825174.chain_3643,blat.proc3825174.chain_3644,blat.proc3825174.chain_3649,blat.proc3825174.chain_3652	9	STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i10,Trinity_GG_29821_c0_g1_i11,blat.proc3825174.chain_3645,blat.proc3825174.chain_3646,blat.proc3825174.chain_3650	7
scaffold_26	alt_donor	4818400	4818401	+	asmbl_34927,asmbl_34929	none	STRG.28202.1,blat.proc3825178.chain_1220,blat.proc3825178.chain_1222	3	blat.proc3825178.chain_1219	1
scaffold_10	retained_intron	713246	713732	-	asmbl_3989	none	STRG.11957.4	1	STRG.11957.1,STRG.11957.2,STRG.11957.3	3
scaffold_14	retained_intron	2940933	2941376	-	asmbl_12993	none	STRG.16899.2,Trinity_GG_9476_c0_g1_i1,blat.proc3825156.chain_1739	3	STRG.16899.1,blat.proc3825156.chain_1740,blat.proc3825156.chain_1741	3
scaffold_67	spliced_intron	6653	6754	-	asmbl_49512	none	STRG.30110.2	1	STRG.30110.1,blat.proc3825162.chain_3263	2
scaffold_4	ends_in_intron	17031260	17031260	+	asmbl_42022,asmbl_42023	none	blat.proc3825166.chain_1646,blat.proc3825166.chain_1648	2	STRG.5301.2,STRG.5301.3,blat.proc3825166.chain_1650	3
scaffold_4	skipped_exon	13429773	13431110	+	asmbl_41796	none	STRG.4981.3	1	STRG.4981.1,STRG.4981.2	2
scaffold_8	alternate_exon	16504948	16517924	-	asmbl_52413	none	blat.proc3825152.chain_2931	1	STRG.10629.2	1
scaffold_4	alt_donor	19028785	19028786	-	asmbl_43397	none	STRG.5484.1,blat.proc3825150.chain_1669	2	STRG.5484.2,blat.proc3825150.chain_1670	2
scaffold_18	ends_in_intron	371396	371396	-	asmbl_19577	none	Trinity_GG_11786_c0_g1_i1,blat.proc3825158.chain_1987	2	STRG.20990.1,blat.proc3825158.chain_1985,blat.proc3825158.chain_1986,blat.proc3825158.chain_1988,blat.proc3825158.chain_1989,blat.proc3825158.chain_1990	6
scaffold_28	retained_exon	5391170	5391381	+	asmbl_37586	none	Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868	2	STRG.29687.3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866	3
scaffold_70	retained_intron	7908	7945	-	asmbl_51598	none	STRG.30109.1	1	STRG.30108.2	1
scaffold_6	alt_donor	5628778	5628779	+	asmbl_46959	none	STRG.7520.2,Trinity_GG_21421_c0_g1_i1,blat.proc3825166.chain_3703	3	STRG.7520.1,Trinity_GG_21421_c0_g1_i2,blat.proc3825166.chain_3704	3
scaffold_13	spliced_intron	9896483	9896567	-	asmbl_10043	none	STRG.16234.1,blat.proc3825156.chain_1127	2	blat.proc3825156.chain_1126	1
scaffold_12	alternate_exon	4753922	4754827	+	asmbl_7617	none	STRG.14653.1,Trinity_GG_25361_c1_g1_i1,Trinity_GG_25361_c1_g1_i2,blat.proc3825170.chain_3127,blat.proc3825170.chain_3129	5	STRG.14653.2,Trinity_GG_25361_c0_g1_i1,blat.proc3825170.chain_3125,blat.proc3825170.chain_3128	4
scaffold_14	alternate_exon	14148983	14150151	+	asmbl_12528	none	STRG.17687.3	1	STRG.17687.4	1
scaffold_13	alt_donor	1380202	1380203	-	asmbl_9404,asmbl_9405	none	STRG.15508.2,blat.proc3825156.chain_340,blat.proc3825156.chain_342	3	STRG.15508.1	1
scaffold_1	spliced_intron	20988978	20989300	+	asmbl_2670	none	STRG.1435.3,Trinity_GG_18143_c0_g1_i2,blat.proc3825164.chain_1567	3	STRG.1435.1,Trinity_GG_18143_c0_g1_i1,blat.proc3825164.chain_1564	3
scaffold_18	retained_exon	5985192	5985311	+	asmbl_20641,asmbl_20646	none	blat.proc3825174.chain_2289,blat.proc3825174.chain_2291,blat.proc3825174.chain_2293	3	blat.proc3825174.chain_2286,blat.proc3825174.chain_2288,blat.proc3825174.chain_2290,blat.proc3825174.chain_2292	4
scaffold_16	ends_in_intron	15224040	15224040	+	asmbl_16719	none	STRG.19882.2,blat.proc3825174.chain_761	2	STRG.19882.1,STRG.19882.3,STRG.19882.4	3
scaffold_3	alt_acceptor	11270141	11270142	+	asmbl_40335	none	STRG.3552.1,Trinity_GG_19325_c0_g1_i2,blat.proc3825166.chain_76	3	STRG.3552.2,Trinity_GG_19325_c0_g1_i3,blat.proc3825166.chain_78	3
scaffold_1	alternate_exon	974911	975359	-	asmbl_40	none	blat.proc3825148.chain_81	1	STRG.58.1,blat.proc3825148.chain_78,blat.proc3825148.chain_79	3
scaffold_22	starts_in_intron	7944187	7944187	+	asmbl_30241	none	Trinity_GG_31246_c0_g1_i1,blat.proc3825176.chain_2290	2	STRG.25149.1,blat.proc3825176.chain_2291	2
scaffold_4	alt_acceptor	11305441	11305442	+	asmbl_41702	none	STRG.4830.2	1	STRG.4830.1,blat.proc3825166.chain_1245	2
scaffold_2	retained_intron	7214953	7215092	+	asmbl_24542	none	STRG.2054.3,Trinity_GG_18495_c0_g1_i8,blat.proc3825164.chain_2273	3	STRG.2054.1,STRG.2054.2,Trinity_GG_18495_c0_g1_i5,Trinity_GG_18495_c0_g1_i7,blat.proc3825164.chain_2268,blat.proc3825164.chain_2272	6
scaffold_14	alternate_exon	8007817	8007987	+	asmbl_12186	none	STRG.17217.2	1	STRG.17217.1,blat.proc3825172.chain_1980,blat.proc3825172.chain_1981	3
scaffold_18	ends_in_intron	1725038	1725038	+	asmbl_20376	none	blat.proc3825174.chain_1996	1	STRG.21057.1,blat.proc3825174.chain_1995	2
scaffold_13	spliced_intron	16250502	16250688	+	asmbl_11565	none	STRG.16679.2,blat.proc3825172.chain_1460,blat.proc3825172.chain_1461	3	Trinity_GG_26497_c0_g1_i4,blat.proc3825172.chain_1458	2
scaffold_9	ends_in_intron	14805566	14805566	-	asmbl_55493	none	blat.proc3825154.chain_133	1	STRG.11701.1,blat.proc3825154.chain_134	2
scaffold_8	ends_in_intron	17282654	17282654	-	asmbl_52441	none	Trinity_GG_5894_c3_g1_i1,blat.proc3825152.chain_2862	2	STRG.10651.1,blat.proc3825152.chain_2857,blat.proc3825152.chain_2859	3
scaffold_9	alt_acceptor	13039798	13039799	+	asmbl_54480	none	STRG.11612.1,blat.proc3825170.chain_412	2	STRG.11612.2	1
scaffold_21	retained_intron	730900	730999	+	asmbl_28290	none	STRG.23764.3	1	STRG.23764.2,Trinity_GG_30474_c0_g1_i2,blat.proc3825176.chain_969	3
scaffold_6	spliced_intron	797115	797273	-	asmbl_48067,asmbl_48069	none	STRG.7142.1,STRG.7142.2,blat.proc3825150.chain_3254	3	STRG.7142.3	1
scaffold_6	alt_donor	6999942	6999943	+	asmbl_47039	none	STRG.7612.1	1	STRG.7612.2,STRG.7612.3,blat.proc3825168.chain_10	3
scaffold_16	alt_donor	574007	574008	-	asmbl_16887	none	STRG.19036.2,blat.proc3825158.chain_127	2	STRG.19036.1	1
scaffold_20	spliced_intron	1754144	1754228	+	asmbl_26452	none	STRG.22921.3	1	STRG.22921.1,blat.proc3825176.chain_122	2
scaffold_13	alt_donor	9536191	9536192	-	asmbl_10033	none	STRG.16216.4	1	STRG.16216.3,STRG.16216.5,blat.proc3825156.chain_1124	3
scaffold_8	starts_in_intron	5968674	5968674	+	asmbl_52919	none	blat.proc3825168.chain_2577	1	STRG.10007.1,blat.proc3825168.chain_2579	2
scaffold_10	retained_exon	12856951	12857039	-	asmbl_4833	none	STRG.12871.2	1	STRG.12871.1	1
scaffold_12	alternate_exon	8948958	8949061	-	asmbl_8636	none	STRG.14901.2	1	STRG.14901.1,blat.proc3825154.chain_3400	2
scaffold_19	starts_in_intron	2780749	2780749	+	asmbl_21279	none	Trinity_GG_29459_c0_g1_i7,blat.proc3825174.chain_3000	2	STRG.21962.2,STRG.21962.4,STRG.21962.5	3
scaffold_1	alt_acceptor	15122036	15122037	+	asmbl_2424	none	STRG.1087.3	1	STRG.1087.1,STRG.1087.2,blat.proc3825164.chain_1247,blat.proc3825164.chain_1248	4
scaffold_4	alt_donor	18065490	18065491	-	asmbl_43343	none	STRG.5400.2,blat.proc3825150.chain_1578	2	STRG.5400.1,blat.proc3825150.chain_1579	2
scaffold_13	starts_in_intron	7195053	7195053	-	asmbl_9858	none	STRG.16016.2,Trinity_GG_9030_c1_g1_i1,blat.proc3825156.chain_962	3	STRG.16016.1,STRG.16016.3,STRG.16016.5,blat.proc3825156.chain_957,blat.proc3825156.chain_960,blat.proc3825156.chain_961	6
scaffold_18	alt_acceptor	8401900	8401901	+	asmbl_20831	none	STRG.21513.1,blat.proc3825174.chain_2580	2	STRG.21513.2	1
scaffold_4	spliced_intron	16932301	16932423	-	asmbl_43238	none	STRG.5282.1	1	STRG.5282.2	1
scaffold_5	retained_intron	7035672	7035721	+	asmbl_45472,asmbl_45473,asmbl_45474,asmbl_45475,asmbl_45476,asmbl_45477	none	STRG.6116.1,STRG.6116.2,STRG.6116.3,STRG.6116.4,Trinity_GG_20674_c1_g1_i4,blat.proc3825166.chain_2377	6	blat.proc3825166.chain_2375	1
scaffold_25	retained_intron	6067602	6068378	-	asmbl_34318,asmbl_34324	none	STRG.27490.1,blat.proc3825162.chain_847,blat.proc3825162.chain_849	3	STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_845,blat.proc3825162.chain_846,blat.proc3825162.chain_848,blat.proc3825162.chain_850	6
scaffold_13	alt_acceptor	534811	534812	-	asmbl_9358,asmbl_9360	none	STRG.15447.1,Trinity_GG_8674_c0_g1_i1,Trinity_GG_8674_c0_g1_i2,blat.proc3825156.chain_326,blat.proc3825156.chain_327	5	STRG.15447.2,STRG.15447.3	2
scaffold_8	skipped_exon	11560060	11561679	+	asmbl_53233	none	STRG.10351.2	1	STRG.10351.1,Trinity_GG_23082_c0_g1_i2,blat.proc3825168.chain_2934,blat.proc3825168.chain_2935	4
scaffold_13	ends_in_intron	7175660	7175660	-	asmbl_9854	none	Trinity_GG_9010_c0_g1_i2,blat.proc3825156.chain_923	2	STRG.16014.1,blat.proc3825156.chain_924	2
scaffold_23	alt_acceptor	2635368	2635369	+	asmbl_31410,asmbl_31411,asmbl_31412,asmbl_31413	none	STRG.25731.1,STRG.25731.2,STRG.25731.3,STRG.25731.5,Trinity_GG_31521_c0_g1_i6,blat.proc3825176.chain_2693	6	STRG.25731.4	1
scaffold_10	starts_in_intron	14698509	14698509	+	asmbl_3657	none	blat.proc3825170.chain_1624	1	STRG.13024.1,STRG.13024.2,blat.proc3825170.chain_1625,blat.proc3825170.chain_1626,blat.proc3825170.chain_1628	5
scaffold_12	spliced_intron	16721517	16721700	-	asmbl_9139	none	STRG.15413.1,blat.proc3825156.chain_253	2	Trinity_GG_8643_c0_g1_i1,blat.proc3825156.chain_252	2
scaffold_3	retained_intron	1466208	1466551	-	asmbl_38707	none	STRG.2965.1,blat.proc3825148.chain_2864	2	STRG.2965.2,blat.proc3825148.chain_2865	2
scaffold_5	starts_in_intron	168866	168866	+	asmbl_45080	none	blat.proc3825166.chain_1873	1	STRG.5578.1,Trinity_GG_20371_c0_g1_i2	2
scaffold_28	retained_intron	9441074	9441164	-	asmbl_38514	none	blat.proc3825162.chain_3166	1	STRG.29974.1	1
scaffold_6	spliced_intron	15944850	15944965	+	asmbl_47680	none	STRG.8324.3	1	STRG.8324.1,STRG.8324.4	2
scaffold_22	alternate_exon	1006301	1008843	+	asmbl_29914	none	blat.proc3825176.chain_1859	1	STRG.24754.1,Trinity_GG_30985_c0_g1_i3,blat.proc3825176.chain_1857	3
scaffold_13	alt_acceptor	16250687	16250688	+	asmbl_11565	none	STRG.16679.2,blat.proc3825172.chain_1460,blat.proc3825172.chain_1461	3	STRG.16679.1,blat.proc3825172.chain_1459	2
scaffold_28	ends_in_intron	5237819	5237819	-	asmbl_38270	none	Trinity_GG_16598_c0_g1_i6,blat.proc3825162.chain_2788	2	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2781,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	6
scaffold_14	starts_in_intron	1713636	1713636	-	asmbl_12912	none	Trinity_GG_9373_c0_g1_i1,blat.proc3825156.chain_1569	2	STRG.16801.1	1
scaffold_11	spliced_intron	13541556	13541653	+	asmbl_6060,asmbl_6062	none	STRG.14211.1,STRG.14211.2,Trinity_GG_25145_c0_g1_i2,blat.proc3825170.chain_2755	4	Trinity_GG_25145_c0_g1_i1,blat.proc3825170.chain_2754	2
scaffold_1	spliced_intron	6324338	6324422	+	asmbl_1827,asmbl_1829	none	STRG.430.1,blat.proc3825164.chain_576,blat.proc3825164.chain_578	3	blat.proc3825164.chain_577	1
scaffold_6	skipped_exon	9956533	9958195	+	asmbl_47255	none	STRG.7836.2,blat.proc3825168.chain_302	2	STRG.7836.1,blat.proc3825168.chain_301	2
scaffold_4	spliced_intron	4449410	4449595	+	asmbl_41273	none	STRG.4354.1,Trinity_GG_19745_c0_g1_i1,blat.proc3825166.chain_828	3	Trinity_GG_19745_c0_g1_i2,blat.proc3825166.chain_827	2
scaffold_2	alt_donor	946226	946227	+	asmbl_24162,asmbl_24163,asmbl_24167	none	STRG.1574.1,STRG.1574.2,STRG.1574.3	3	STRG.1574.4	1
scaffold_4	ends_in_intron	10851973	10851973	+	asmbl_41672	none	blat.proc3825166.chain_1264	1	STRG.4805.1,Trinity_GG_20008_c0_g1_i3,blat.proc3825166.chain_1263,blat.proc3825166.chain_1265	4
scaffold_23	starts_in_intron	6857970	6857970	-	asmbl_30984	none	STRG.26018.1	1	STRG.26018.2,STRG.26018.3,blat.proc3825160.chain_3203	3
scaffold_19	alternate_exon	13141026	13141055	+	asmbl_21854	none	STRG.22633.3	1	STRG.22633.2,blat.proc3825174.chain_3653	2
scaffold_3	retained_intron	10274721	10275024	+	asmbl_40250,asmbl_40256	none	blat.proc3825164.chain_3728,blat.proc3825164.chain_3736	2	STRG.3467.1,STRG.3467.3,blat.proc3825164.chain_3727,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734	5
scaffold_1	alt_donor	20132712	20132713	+	asmbl_2609	none	blat.proc3825164.chain_1420	1	STRG.1380.1,Trinity_GG_18065_c0_g1_i1,blat.proc3825164.chain_1417	3
scaffold_21	alt_donor	5604559	5604560	+	asmbl_28585	none	STRG.24094.1,blat.proc3825176.chain_1299	2	STRG.24094.2	1
scaffold_14	retained_exon	209954	210056	-	asmbl_12796	none	STRG.16713.1,Trinity_GG_9359_c0_g2_i2,blat.proc3825156.chain_1536	3	STRG.16713.2,Trinity_GG_9359_c0_g2_i5,blat.proc3825156.chain_1538	3
scaffold_9	skipped_exon	13606570	13608048	+	asmbl_54504	none	STRG.11647.2,blat.proc3825170.chain_455	2	STRG.11647.1,blat.proc3825170.chain_456	2
scaffold_20	retained_intron	7103318	7104894	-	asmbl_25876	none	STRG.23282.1,Trinity_GG_12993_c0_g2_i1,blat.proc3825160.chain_373,blat.proc3825160.chain_376,blat.proc3825160.chain_377	5	STRG.23282.2,blat.proc3825160.chain_375	2
scaffold_23	alternate_exon	7900786	7901400	-	asmbl_31054	none	STRG.26097.1,blat.proc3825160.chain_3223	2	STRG.26097.3	1
scaffold_25	alt_donor	7927631	7927632	+	asmbl_33695	none	STRG.27621.3,Trinity_GG_32493_c0_g1_i2,blat.proc3825178.chain_644	3	STRG.27621.1,STRG.27621.2,Trinity_GG_32493_c0_g1_i1,blat.proc3825178.chain_643	4
scaffold_10	starts_in_intron	16530743	16530743	+	asmbl_3722	none	STRG.13128.2	1	STRG.13128.1,blat.proc3825170.chain_1651,blat.proc3825170.chain_1652,blat.proc3825170.chain_1653,blat.proc3825170.chain_1654	5
scaffold_1	spliced_intron	12450440	12450569	+	asmbl_2219	none	STRG.859.3	1	Trinity_GG_17840_c0_g1_i9,blat.proc3825164.chain_1026	2
scaffold_11	skipped_exon	4674969	4676447	-	asmbl_6610,asmbl_6611,asmbl_6615	none	STRG.13564.2,STRG.13564.4,STRG.13564.5,blat.proc3825154.chain_2157	4	STRG.13564.1,blat.proc3825154.chain_2155,blat.proc3825154.chain_2158	3
scaffold_23	alternate_exon	4157940	4158214	+	asmbl_31486	none	STRG.25830.1,Trinity_GG_31557_c0_g1_i2,blat.proc3825176.chain_2759	3	STRG.25830.2,Trinity_GG_31557_c0_g1_i1,blat.proc3825176.chain_2758	3
scaffold_2	alt_donor	19771832	19771833	+	asmbl_25285,asmbl_25287,asmbl_25288	none	STRG.2827.1,STRG.2827.2,blat.proc3825164.chain_3073,blat.proc3825164.chain_3074	4	blat.proc3825164.chain_3072	1
scaffold_11	spliced_intron	3767796	3767816	-	asmbl_6577	none	STRG.13508.2	1	Trinity_GG_7568_c0_g1_i3,Trinity_GG_7568_c0_g1_i8,Trinity_GG_7568_c0_g1_i9	3
scaffold_3	spliced_intron	18372532	18372629	-	asmbl_39619	none	STRG.4051.1	1	blat.proc3825150.chain_229	1
scaffold_15	retained_exon	346455	346550	+	asmbl_14959	none	STRG.17885.1,blat.proc3825172.chain_2607	2	STRG.17885.2	1
scaffold_1	alt_acceptor	5990011	5990012	+	asmbl_1813	none	STRG.394.2	1	STRG.394.1,blat.proc3825164.chain_547	2
scaffold_1	alternate_exon	18339632	18339786	+	asmbl_2554	none	STRG.1292.4,blat.proc3825164.chain_1358	2	STRG.1292.1,STRG.1292.2,STRG.1292.3,blat.proc3825164.chain_1359	4
scaffold_13	alt_acceptor	520699	520700	+	asmbl_10484,asmbl_10486,asmbl_10487,asmbl_10488,asmbl_10489,asmbl_10490	none	STRG.15449.1,STRG.15449.2,STRG.15449.4,STRG.15449.5,Trinity_GG_25810_c0_g1_i5,blat.proc3825172.chain_179,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_188	10	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3
scaffold_13	spliced_intron	6434028	6434177	-	asmbl_9790,asmbl_9792,asmbl_9793,asmbl_9794,asmbl_9795	none	STRG.15943.1,STRG.15943.2,blat.proc3825156.chain_845,blat.proc3825156.chain_847,blat.proc3825156.chain_850	5	blat.proc3825156.chain_846	1
scaffold_3	spliced_intron	10929425	10929727	+	asmbl_40320	none	STRG.3532.1,blat.proc3825166.chain_59	2	Trinity_GG_19312_c0_g1_i2,blat.proc3825166.chain_58	2
scaffold_4	alternate_exon	16650240	16650248	+	asmbl_41993	none	blat.proc3825166.chain_1602	1	STRG.5252.2	1
scaffold_15	alternate_exon	5457805	5457903	-	asmbl_14209,asmbl_14214	none	STRG.18235.1,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	3	blat.proc3825156.chain_3104	1
scaffold_27	retained_intron	6742224	6742264	+	asmbl_36411,asmbl_36413	none	STRG.29052.2,Trinity_GG_33384_c0_g1_i1,blat.proc3825178.chain_2244,blat.proc3825178.chain_2245	4	STRG.29052.1	1
scaffold_15	alt_acceptor	4984101	4984102	-	asmbl_14182,asmbl_14183	none	STRG.18211.3,STRG.18211.4	2	STRG.18211.1,STRG.18211.5,blat.proc3825156.chain_3069,blat.proc3825156.chain_3070,blat.proc3825156.chain_3072	5
scaffold_25	alternate_exon	641086	641216	+	asmbl_33343	none	STRG.27113.1,Trinity_GG_32290_c1_g1_i1,blat.proc3825178.chain_301	3	STRG.27113.2	1
scaffold_14	retained_intron	15346342	15346877	-	asmbl_13713,asmbl_13714	none	STRG.17765.2,Trinity_GG_9998_c0_g1_i3,blat.proc3825156.chain_2606	3	STRG.17765.1,Trinity_GG_9998_c0_g1_i4,blat.proc3825156.chain_2605,blat.proc3825156.chain_2607,blat.proc3825156.chain_2608	5
scaffold_5	skipped_exon	6289083	6289560	+	asmbl_45418,asmbl_45419	none	STRG.6040.1,Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	3	STRG.6040.2	1
scaffold_23	skipped_exon	5583740	5584101	+	asmbl_31589	none	STRG.25931.2	1	STRG.25931.4	1
scaffold_10	ends_in_intron	12793441	12793441	+	asmbl_3542	none	blat.proc3825170.chain_1492,blat.proc3825170.chain_1493,blat.proc3825170.chain_1494	3	STRG.12863.1	1
scaffold_21	alt_donor	8540650	8540651	-	asmbl_27929,asmbl_27932	none	STRG.24387.2,blat.proc3825160.chain_1547,blat.proc3825160.chain_1549	3	STRG.24387.3,blat.proc3825160.chain_1548	2
scaffold_1	alt_acceptor	13884637	13884638	-	asmbl_854,asmbl_857,asmbl_858	none	STRG.996.3,blat.proc3825148.chain_1003,blat.proc3825148.chain_1007	3	STRG.996.1,blat.proc3825148.chain_1004	2
scaffold_18	alt_acceptor	1896938	1896939	-	asmbl_19653,asmbl_19655,asmbl_19657,asmbl_19663	none	STRG.21081.10,STRG.21081.8,STRG.21081.9,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016	5	STRG.21081.6,STRG.21081.7	2
scaffold_8	starts_in_intron	14570851	14570851	+	asmbl_53384	none	STRG.10543.4	1	STRG.10543.2,STRG.10543.3	2
scaffold_16	spliced_intron	4655336	4655551	+	asmbl_16193,asmbl_16194	none	STRG.19251.1,STRG.19251.2,blat.proc3825174.chain_136,blat.proc3825174.chain_138	4	Trinity_GG_27846_c1_g1_i1,blat.proc3825174.chain_140	2
scaffold_20	alt_acceptor	2760027	2760028	-	asmbl_25672	none	STRG.23018.1	1	STRG.23018.2,STRG.23018.3	2
scaffold_17	retained_intron	7046365	7047019	+	asmbl_18888	none	STRG.20370.2,Trinity_GG_28477_c0_g2_i1	2	STRG.20370.3,blat.proc3825174.chain_1225,blat.proc3825174.chain_1227	3
scaffold_13	retained_intron	2652683	2652800	-	asmbl_9471	none	blat.proc3825156.chain_378	1	STRG.15580.1,Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_376,blat.proc3825156.chain_377,blat.proc3825156.chain_379,blat.proc3825156.chain_380	6
scaffold_25	spliced_intron	9450215	9450348	+	asmbl_33817,asmbl_33818,asmbl_33820	none	STRG.27758.1,STRG.27758.2,STRG.27758.3,blat.proc3825178.chain_803,blat.proc3825178.chain_804	5	blat.proc3825178.chain_801	1
scaffold_18	alt_acceptor	13656390	13656391	-	asmbl_20185	none	STRG.21804.1	1	STRG.21804.2,STRG.21804.3	2
scaffold_16	retained_intron	1237655	1237855	-	asmbl_16929,asmbl_16931	none	blat.proc3825158.chain_218,blat.proc3825158.chain_221	2	STRG.19083.1,blat.proc3825158.chain_219,blat.proc3825158.chain_220	3
scaffold_23	starts_in_intron	6907141	6907141	-	asmbl_30989	none	blat.proc3825160.chain_3179	1	STRG.26021.1,STRG.26021.2,STRG.26021.3,blat.proc3825160.chain_3178,blat.proc3825160.chain_3180	5
scaffold_23	alt_acceptor	10826232	10826233	-	asmbl_31164	none	STRG.26273.1,blat.proc3825160.chain_3407	2	STRG.26273.2	1
scaffold_8	retained_intron	18089675	18090313	+	asmbl_53525	none	STRG.10711.1,blat.proc3825168.chain_3139	2	STRG.10711.2,blat.proc3825168.chain_3140	2
scaffold_9	starts_in_intron	5279031	5279031	+	asmbl_54020	none	blat.proc3825168.chain_3648	1	STRG.11119.1	1
scaffold_17	alt_acceptor	7076530	7076531	+	asmbl_18893	none	STRG.20378.2	1	STRG.20378.1,blat.proc3825174.chain_1183	2
scaffold_17	alt_acceptor	11334984	11334985	+	asmbl_19218	none	STRG.20686.2	1	STRG.20686.1	1
scaffold_26	spliced_intron	4155586	4155680	+	asmbl_34877	none	STRG.28120.1,blat.proc3825178.chain_1202	2	STRG.28120.2	1
scaffold_9	spliced_intron	9688546	9688614	-	asmbl_55239	none	STRG.11346.3	1	blat.proc3825152.chain_3615,blat.proc3825152.chain_3616	2
scaffold_3	alt_acceptor	17364766	17364767	-	asmbl_39549,asmbl_39557	none	STRG.3971.2,blat.proc3825150.chain_184,blat.proc3825150.chain_185	3	STRG.3971.1,STRG.3971.4,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_179,blat.proc3825150.chain_181,blat.proc3825150.chain_182	7
scaffold_8	spliced_intron	14134530	14135737	-	asmbl_52297	none	STRG.10519.1	1	STRG.10519.2,STRG.10519.3,Trinity_GG_5842_c0_g1_i1,blat.proc3825152.chain_2759,blat.proc3825152.chain_2761	5
scaffold_2	alt_donor	17456033	17456034	+	asmbl_25167	none	STRG.2631.1	1	STRG.2631.2,blat.proc3825164.chain_2879	2
scaffold_18	alternate_exon	7948289	7948431	-	asmbl_19991	none	STRG.21494.2,blat.proc3825158.chain_2403	2	STRG.21494.4,blat.proc3825158.chain_2404	2
scaffold_21	starts_in_intron	732027	732027	+	asmbl_28292	none	Trinity_GG_30474_c0_g1_i1,blat.proc3825176.chain_970	2	STRG.23764.1,STRG.23764.2,STRG.23764.3,STRG.23764.4,STRG.23764.5,Trinity_GG_30474_c0_g1_i2,blat.proc3825176.chain_969	7
scaffold_5	alt_acceptor	15547083	15547084	-	asmbl_44696,asmbl_44698	none	STRG.6747.1,STRG.6747.2,blat.proc3825150.chain_2941	3	STRG.6747.3	1
scaffold_10	starts_in_intron	2682750	2682750	+	asmbl_2996	none	Trinity_GG_24035_c0_g1_i4,blat.proc3825170.chain_829	2	STRG.12084.1,blat.proc3825170.chain_828	2
scaffold_3	alt_acceptor	11270185	11270186	+	asmbl_40334	none	STRG.3552.2,Trinity_GG_19325_c0_g1_i3,blat.proc3825166.chain_78	3	STRG.3552.1,Trinity_GG_19325_c0_g1_i2,blat.proc3825166.chain_76	3
scaffold_7	ends_in_intron	1447291	1447291	-	asmbl_50730	none	Trinity_GG_4938_c0_g1_i4,blat.proc3825152.chain_1130	2	STRG.8648.1,Trinity_GG_4938_c0_g1_i2,blat.proc3825152.chain_1132	3
scaffold_9	retained_intron	16575103	16575191	+	asmbl_54607	none	STRG.11800.1,blat.proc3825170.chain_594	2	STRG.11800.2,blat.proc3825170.chain_593	2
scaffold_13	spliced_intron	400122	400388	-	asmbl_9334,asmbl_9335,asmbl_9337,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9350,asmbl_9352,asmbl_9354	none	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366,blat.proc3825156.chain_368,blat.proc3825156.chain_369	27	Trinity_GG_8688_c0_g2_i1,Trinity_GG_8688_c0_g2_i2,blat.proc3825156.chain_367,blat.proc3825156.chain_370	4
scaffold_21	alt_acceptor	256536	256537	-	asmbl_27290,asmbl_27292,asmbl_27293	none	blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	3	STRG.23725.4,STRG.23725.5,blat.proc3825160.chain_811,blat.proc3825160.chain_812	4
scaffold_14	alt_donor	9654683	9654684	-	asmbl_13392	none	blat.proc3825156.chain_2105	1	STRG.17354.1,blat.proc3825156.chain_2104	2
scaffold_12	ends_in_intron	4984128	4984128	+	asmbl_7625	none	blat.proc3825170.chain_3138	1	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3139,blat.proc3825170.chain_3141	6
scaffold_28	spliced_intron	5010558	5011216	+	asmbl_37555,asmbl_37560	none	STRG.29651.1,blat.proc3825178.chain_2833	2	blat.proc3825178.chain_2834	1
scaffold_5	starts_in_intron	15624340	15624340	-	asmbl_44712	none	Trinity_GG_3801_c0_g1_i3	1	STRG.6755.1,STRG.6755.2	2
scaffold_300	retained_intron	1280	1588	+	asmbl_40902	none	STRG.30272.3,blat.proc3825178.chain_3363	2	STRG.30272.2	1
scaffold_1	alternate_exon	18488802	18488897	-	asmbl_1113	none	STRG.1298.3	1	STRG.1298.8	1
scaffold_6	alt_acceptor	17886314	17886315	+	asmbl_47796	none	STRG.8482.2,Trinity_GG_21935_c0_g1_i3,blat.proc3825168.chain_874	3	Trinity_GG_21935_c0_g1_i6,blat.proc3825168.chain_876	2
scaffold_25	skipped_exon	9939882	9942193	-	asmbl_34530	none	STRG.27806.2	1	STRG.27806.1	1
scaffold_14	starts_in_intron	7495820	7495820	+	asmbl_12169	none	Trinity_GG_26725_c1_g1_i1,blat.proc3825172.chain_1880	2	STRG.17193.1,STRG.17193.2,STRG.17193.4,Trinity_GG_26725_c1_g1_i2,blat.proc3825172.chain_1881,blat.proc3825172.chain_1882	6
scaffold_7	alt_donor	4177692	4177693	+	asmbl_49723,asmbl_49725	none	STRG.8817.2,STRG.8817.3,blat.proc3825168.chain_1255	3	STRG.8817.1,blat.proc3825168.chain_1254	2
scaffold_8	alt_acceptor	15692383	15692384	+	asmbl_53412	none	STRG.10569.1,Trinity_GG_23189_c0_g1_i2,blat.proc3825168.chain_3114	3	STRG.10569.2	1
scaffold_5	retained_intron	5045141	5045218	+	asmbl_45325,asmbl_45328	none	STRG.5958.4,blat.proc3825166.chain_2128	2	STRG.5958.3	1
scaffold_13	ends_in_intron	3243173	3243173	+	asmbl_10670	none	Trinity_GG_25915_c1_g1_i1,blat.proc3825172.chain_409	2	STRG.15630.1,STRG.15630.2,blat.proc3825172.chain_406,blat.proc3825172.chain_407	4
scaffold_11	alt_donor	15833771	15833772	+	asmbl_6136	none	blat.proc3825170.chain_2797	1	STRG.14321.1,STRG.14321.2,blat.proc3825170.chain_2798,blat.proc3825170.chain_2800	4
scaffold_14	ends_in_intron	10693695	10693695	+	asmbl_12339	none	blat.proc3825172.chain_2157	1	STRG.17422.1,STRG.17422.4,blat.proc3825172.chain_2154	3
scaffold_4	alternate_exon	1904834	1904948	+	asmbl_41139	none	STRG.4205.1	1	STRG.4205.2,blat.proc3825166.chain_666	2
scaffold_13	alt_acceptor	8289226	8289227	+	asmbl_11115	none	STRG.16120.2	1	STRG.16120.1,blat.proc3825172.chain_887	2
scaffold_4	spliced_intron	12457553	12457685	+	asmbl_41725	none	STRG.4880.1,blat.proc3825166.chain_1281	2	blat.proc3825166.chain_1280	1
scaffold_21	alt_donor	4969907	4969908	+	asmbl_28550	none	STRG.24041.2	1	STRG.24041.1,blat.proc3825176.chain_1258	2
scaffold_22	spliced_intron	4221540	4221851	-	asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29218,asmbl_29222,asmbl_29223,asmbl_29225,asmbl_29226,asmbl_29227	none	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2074,blat.proc3825160.chain_2075,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	11	blat.proc3825160.chain_2077	1
scaffold_8	starts_in_intron	1833435	1833435	+	asmbl_52711	none	Trinity_GG_22754_c1_g2_i1	1	blat.proc3825168.chain_2322,blat.proc3825168.chain_2324	2
scaffold_21	alt_donor	3118024	3118025	-	asmbl_27512	none	blat.proc3825160.chain_995	1	STRG.23938.2,blat.proc3825160.chain_996	2
scaffold_8	alternate_exon	11826620	11829974	+	asmbl_53273	none	STRG.10387.1	1	Trinity_GG_23113_c0_g1_i1,blat.proc3825168.chain_2981	2
scaffold_12	starts_in_intron	10387227	10387227	-	asmbl_8751	none	Trinity_GG_8385_c0_g1_i3,blat.proc3825154.chain_3536	2	STRG.15015.1,STRG.15015.2,blat.proc3825154.chain_3535,blat.proc3825154.chain_3537	4
scaffold_1	alternate_exon	14076352	14077631	+	asmbl_2334	none	blat.proc3825164.chain_1137	1	STRG.1003.1,Trinity_GG_17903_c0_g1_i3,Trinity_GG_17903_c0_g1_i4,blat.proc3825164.chain_1138,blat.proc3825164.chain_1139	5
scaffold_11	spliced_intron	8192814	8192909	-	asmbl_6850	none	STRG.13829.2,Trinity_GG_7742_c0_g1_i1,blat.proc3825154.chain_2394	3	Trinity_GG_7742_c0_g1_i2,blat.proc3825154.chain_2393	2
scaffold_14	spliced_intron	208851	208933	-	asmbl_12795,asmbl_12796,asmbl_12797	none	STRG.16713.1,STRG.16713.2,STRG.16713.4,Trinity_GG_9359_c0_g2_i2,Trinity_GG_9359_c0_g2_i4,Trinity_GG_9359_c0_g2_i5,blat.proc3825156.chain_1536,blat.proc3825156.chain_1538,blat.proc3825156.chain_1539	9	Trinity_GG_9359_c0_g2_i3,blat.proc3825156.chain_1537	2
scaffold_5	retained_intron	14569299	14569509	-	asmbl_44600	none	blat.proc3825150.chain_2783	1	STRG.6658.1,STRG.6658.2,blat.proc3825150.chain_2785	3
scaffold_1	alt_donor	3641914	3641915	+	asmbl_1621	none	STRG.232.2	1	STRG.232.1,blat.proc3825164.chain_343	2
scaffold_3	ends_in_intron	2871639	2871639	+	asmbl_39922	none	Trinity_GG_19036_c1_g1_i1,blat.proc3825164.chain_3288	2	STRG.3047.1,blat.proc3825164.chain_3287	2
scaffold_13	spliced_intron	5575373	5575506	-	asmbl_9699	none	STRG.15857.3	1	STRG.15857.1,STRG.15857.2,blat.proc3825156.chain_740,blat.proc3825156.chain_741	4
scaffold_10	spliced_intron	3758123	3758321	-	asmbl_4221	none	STRG.12208.2	1	STRG.12208.1,STRG.12208.3	2
scaffold_5	alt_acceptor	6587746	6587747	-	asmbl_44104,asmbl_44105,asmbl_44107	none	Trinity_GG_3404_c0_g1_i5,blat.proc3825150.chain_2257,blat.proc3825150.chain_2258,blat.proc3825150.chain_2260	4	blat.proc3825150.chain_2261	1
scaffold_14	alternate_exon	210780	210874	-	asmbl_12795	none	STRG.16713.2,Trinity_GG_9359_c0_g2_i5,blat.proc3825156.chain_1538	3	Trinity_GG_9359_c0_g2_i3,blat.proc3825156.chain_1537	2
scaffold_20	starts_in_intron	1016345	1016345	-	asmbl_25525	none	STRG.22809.1	1	STRG.22809.2,blat.proc3825158.chain_3653	2
scaffold_4	alt_acceptor	17538293	17538294	+	asmbl_42055	none	STRG.5340.2	1	STRG.5340.1	1
scaffold_16	spliced_intron	10447527	10448352	+	asmbl_16536	none	STRG.19614.2,blat.proc3825174.chain_484	2	STRG.19614.1,STRG.19614.3,Trinity_GG_28027_c0_g1_i5,blat.proc3825174.chain_487	4
scaffold_18	retained_exon	12609437	12609570	-	asmbl_20160	none	STRG.21724.1	1	STRG.21724.2,blat.proc3825158.chain_2614	2
scaffold_15	alt_acceptor	11811892	11811893	-	asmbl_14535	none	STRG.18632.2	1	STRG.18632.1,blat.proc3825156.chain_3510	2
scaffold_2	starts_in_intron	4235546	4235546	-	asmbl_23053	none	blat.proc3825148.chain_1779	1	STRG.1859.1,STRG.1859.2,blat.proc3825148.chain_1780,blat.proc3825148.chain_1781	4
scaffold_3	skipped_exon	17366201	17366613	-	asmbl_39549,asmbl_39551,asmbl_39554	none	STRG.3971.2,blat.proc3825150.chain_177,blat.proc3825150.chain_181	3	STRG.3971.1,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_179,blat.proc3825150.chain_182,blat.proc3825150.chain_183	6
scaffold_2	alternate_exon	7324692	7324809	+	asmbl_24563	none	STRG.2062.3,Trinity_GG_18498_c0_g1_i1,blat.proc3825164.chain_2279	3	STRG.2062.2	1
scaffold_26	starts_in_intron	5982220	5982220	+	asmbl_35063	none	Trinity_GG_32976_c0_g1_i2,blat.proc3825178.chain_1432	2	STRG.28312.1,Trinity_GG_32976_c0_g1_i4,blat.proc3825178.chain_1429,blat.proc3825178.chain_1430,blat.proc3825178.chain_1431,blat.proc3825178.chain_1433	6
scaffold_4	ends_in_intron	17806449	17806449	+	asmbl_42074	none	blat.proc3825166.chain_1695	1	blat.proc3825166.chain_1696,blat.proc3825166.chain_1697	2
scaffold_15	alternate_exon	11143710	11143789	-	asmbl_14482	none	blat.proc3825156.chain_3380	1	blat.proc3825156.chain_3383,blat.proc3825156.chain_3384	2
scaffold_24	skipped_exon	9953645	9954584	-	asmbl_33160,asmbl_33162	none	STRG.26968.2,STRG.26968.6	2	STRG.26968.1,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_271,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	7
scaffold_3	alt_acceptor	14835434	14835435	+	asmbl_40558	none	Trinity_GG_19457_c0_g1_i4	1	STRG.3832.1,Trinity_GG_19457_c0_g1_i1,Trinity_GG_19457_c0_g1_i3,blat.proc3825166.chain_316,blat.proc3825166.chain_317	5
scaffold_1	alt_donor	14352501	14352502	-	asmbl_893,asmbl_897	none	STRG.1033.1,blat.proc3825148.chain_1023,blat.proc3825148.chain_1026	3	STRG.1033.2,blat.proc3825148.chain_1025	2
scaffold_21	ends_in_intron	2946838	2946838	-	asmbl_27496	none	blat.proc3825160.chain_985	1	STRG.23917.1,STRG.23917.2,STRG.23917.3,blat.proc3825160.chain_984,blat.proc3825160.chain_986,blat.proc3825160.chain_988	6
scaffold_19	alt_acceptor	1483180	1483181	+	asmbl_21236,asmbl_21238	none	STRG.21906.1,blat.proc3825174.chain_2950	2	STRG.21906.2	1
scaffold_7	alt_acceptor	2519456	2519457	+	asmbl_49655	none	blat.proc3825168.chain_1185	1	blat.proc3825168.chain_1184	1
scaffold_3	starts_in_intron	7290934	7290934	-	asmbl_38960	none	STRG.3330.4	1	STRG.3330.1,STRG.3330.2,STRG.3330.3,blat.proc3825148.chain_3215,blat.proc3825148.chain_3216	5
scaffold_7	alternate_exon	8314299	8314474	-	asmbl_51001	none	STRG.9070.3,blat.proc3825152.chain_1372	2	STRG.9070.2,STRG.9070.4,blat.proc3825152.chain_1373	3
scaffold_19	spliced_intron	3207630	3207699	+	asmbl_21309	none	STRG.22012.2,blat.proc3825174.chain_3042	2	STRG.22012.3,blat.proc3825174.chain_3040	2
scaffold_1	alt_acceptor	12450375	12450376	+	asmbl_2220,asmbl_2221	none	STRG.859.2,Trinity_GG_17840_c0_g1_i2,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1030,blat.proc3825164.chain_1031	5	STRG.859.1,STRG.859.3,Trinity_GG_17840_c0_g1_i1,Trinity_GG_17840_c0_g1_i6,blat.proc3825164.chain_1027,blat.proc3825164.chain_1028,blat.proc3825164.chain_1029	7
scaffold_10	skipped_exon	1490744	1493412	-	asmbl_4067	none	STRG.12025.3	1	STRG.12025.1,STRG.12025.2,blat.proc3825154.chain_512,blat.proc3825154.chain_513	4
scaffold_7	alt_donor	8318950	8318951	-	asmbl_51005	none	blat.proc3825152.chain_1371	1	STRG.9070.4,blat.proc3825152.chain_1369	2
scaffold_23	ends_in_intron	2310320	2310320	+	asmbl_31388	none	blat.proc3825176.chain_2663	1	STRG.25708.1,blat.proc3825176.chain_2660,blat.proc3825176.chain_2661	3
scaffold_26	starts_in_intron	9096633	9096633	+	asmbl_35209	none	STRG.28476.2,blat.proc3825178.chain_1528	2	STRG.28476.1,Trinity_GG_33036_c0_g1_i2,blat.proc3825178.chain_1529	3
scaffold_10	alt_donor	15481438	15481439	-	asmbl_4986	none	STRG.13068.2	1	STRG.13068.1,blat.proc3825154.chain_1630	2
scaffold_9	alt_acceptor	11837876	11837877	-	asmbl_55322	none	STRG.11501.3,blat.proc3825152.chain_3670	2	STRG.11501.1,STRG.11501.2,blat.proc3825152.chain_3669,blat.proc3825152.chain_3671,blat.proc3825152.chain_3672	5
scaffold_27	starts_in_intron	2876319	2876319	+	asmbl_36141	none	blat.proc3825178.chain_1949	1	STRG.28770.1,STRG.28770.3,blat.proc3825178.chain_1947,blat.proc3825178.chain_1950	4
scaffold_2	alt_donor	16097687	16097688	-	asmbl_23673	none	STRG.2561.1,blat.proc3825148.chain_2446	2	STRG.2561.2	1
scaffold_9	retained_intron	14039157	14039465	+	asmbl_54519	none	Trinity_GG_23791_c0_g1_i1,blat.proc3825170.chain_425	2	STRG.11665.3,Trinity_GG_23791_c0_g1_i4,blat.proc3825170.chain_423	3
scaffold_19	starts_in_intron	3060044	3060044	+	asmbl_21303	none	Trinity_GG_29485_c0_g1_i1,blat.proc3825174.chain_3038	2	STRG.21996.1,blat.proc3825174.chain_3037	2
scaffold_27	retained_intron	9968387	9968472	+	asmbl_36552,asmbl_36554	none	STRG.29227.1,STRG.29227.3,blat.proc3825178.chain_2436	3	STRG.29227.2,blat.proc3825178.chain_2435	2
scaffold_11	alt_donor	13253722	13253723	-	asmbl_7126	none	blat.proc3825154.chain_2770	1	STRG.14198.2,STRG.14198.3,blat.proc3825154.chain_2767,blat.proc3825154.chain_2771	4
scaffold_9	spliced_intron	9470104	9470201	-	asmbl_55179,asmbl_55180,asmbl_55181,asmbl_55183,asmbl_55184	none	STRG.11310.1,STRG.11310.3,blat.proc3825152.chain_3566,blat.proc3825152.chain_3567,blat.proc3825152.chain_3570	5	STRG.11310.2,blat.proc3825152.chain_3571	2
scaffold_11	alternate_exon	8624513	8624600	-	asmbl_6865	none	STRG.13880.2,Trinity_GG_7755_c0_g1_i2	2	STRG.13880.1,Trinity_GG_7755_c0_g1_i1,blat.proc3825154.chain_2420	3
scaffold_22	retained_intron	1626257	1626515	-	asmbl_29144	none	STRG.24752.1,blat.proc3825160.chain_1949	2	STRG.24752.2,blat.proc3825160.chain_1950	2
scaffold_19	ends_in_intron	7581922	7581922	+	asmbl_21476	none	Trinity_GG_29596_c0_g1_i1,blat.proc3825174.chain_3238	2	STRG.22236.1,STRG.22236.2,STRG.22236.3,Trinity_GG_29596_c0_g1_i2,blat.proc3825174.chain_3233,blat.proc3825174.chain_3234,blat.proc3825174.chain_3236	7
scaffold_22	retained_intron	4416451	4416579	-	asmbl_29265	none	blat.proc3825160.chain_2020	1	STRG.24869.1,blat.proc3825160.chain_2021	2
scaffold_12	starts_in_intron	147251	147251	+	asmbl_7442	none	Trinity_GG_25272_c0_g1_i1,blat.proc3825170.chain_2977	2	STRG.14423.1,Trinity_GG_25272_c0_g1_i2,blat.proc3825170.chain_2978	3
scaffold_15	alternate_exon	2563343	2563380	+	asmbl_15065	none	STRG.18045.2	1	STRG.18045.1,STRG.18045.3	2
scaffold_14	spliced_intron	405268	405492	+	asmbl_11749,asmbl_11756	none	STRG.16734.5,blat.proc3825172.chain_1515,blat.proc3825172.chain_1516	3	STRG.16734.1,STRG.16734.6,Trinity_GG_26526_c0_g1_i5,Trinity_GG_26526_c0_g1_i6,blat.proc3825172.chain_1510,blat.proc3825172.chain_1513	6
scaffold_5	ends_in_intron	15625456	15625456	-	asmbl_44713	none	blat.proc3825150.chain_2961	1	STRG.6755.1,STRG.6755.2	2
scaffold_25	retained_intron	6066916	6067033	-	asmbl_34321	none	blat.proc3825162.chain_848	1	STRG.27490.1,STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_845,blat.proc3825162.chain_846,blat.proc3825162.chain_847,blat.proc3825162.chain_849,blat.proc3825162.chain_850	8
scaffold_28	retained_intron	303659	303715	+	asmbl_37273	none	Trinity_GG_33561_c0_g1_i3,blat.proc3825178.chain_2507	2	STRG.29264.2	1
scaffold_8	spliced_intron	6019010	6019279	+	asmbl_52922	none	STRG.10013.1,blat.proc3825168.chain_2622	2	Trinity_GG_22906_c2_g1_i2,Trinity_GG_22906_c2_g1_i3,blat.proc3825168.chain_2620,blat.proc3825168.chain_2621	4
scaffold_13	starts_in_intron	15374313	15374313	+	asmbl_11499	none	Trinity_GG_26452_c0_g1_i2,blat.proc3825172.chain_1385	2	STRG.16584.1,STRG.16584.3	2
scaffold_3	ends_in_intron	17782029	17782029	+	asmbl_40693	none	blat.proc3825166.chain_488	1	STRG.3995.1,STRG.3995.2,Trinity_GG_19551_c0_g1_i1,blat.proc3825166.chain_487,blat.proc3825166.chain_489	5
scaffold_6	ends_in_intron	10891123	10891123	+	asmbl_47302	none	Trinity_GG_21643_c0_g1_i1,blat.proc3825168.chain_346	2	STRG.7905.1,blat.proc3825168.chain_347	2
scaffold_14	retained_intron	5790911	5791036	-	asmbl_13093	none	Trinity_GG_9519_c1_g1_i2,blat.proc3825156.chain_1794	2	STRG.17052.1,blat.proc3825156.chain_1795,blat.proc3825156.chain_1796	3
scaffold_19	alt_acceptor	6677710	6677711	-	asmbl_22220	none	STRG.22184.2	1	STRG.22184.1,blat.proc3825158.chain_2916,blat.proc3825158.chain_2917	3
scaffold_7	alt_acceptor	8077833	8077834	-	asmbl_50984	none	STRG.9048.2	1	STRG.9048.1,blat.proc3825152.chain_1444	2
scaffold_23	retained_intron	2126799	2127196	-	asmbl_30691	none	STRG.25683.2,Trinity_GG_14361_c0_g1_i4,blat.proc3825160.chain_2848	3	STRG.25683.1,Trinity_GG_14361_c0_g1_i2,Trinity_GG_14361_c0_g1_i3,blat.proc3825160.chain_2846,blat.proc3825160.chain_2847	5
scaffold_1	spliced_intron	20339758	20340702	+	asmbl_2625	none	blat.proc3825164.chain_1591	1	STRG.1396.1,STRG.1396.3,STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	9
scaffold_18	retained_intron	7481614	7482977	-	asmbl_19936	none	STRG.21443.1,Trinity_GG_11995_c0_g1_i1,blat.proc3825158.chain_2347	3	Trinity_GG_11995_c0_g1_i2	1
scaffold_2	alt_acceptor	15489628	15489629	+	asmbl_25054,asmbl_25055	none	STRG.2506.3,blat.proc3825164.chain_2793	2	STRG.2506.1,STRG.2506.2,STRG.2506.4,blat.proc3825164.chain_2791,blat.proc3825164.chain_2792,blat.proc3825164.chain_2794	6
scaffold_11	alt_acceptor	334282	334283	+	asmbl_5286,asmbl_5287	none	STRG.13269.1,STRG.13269.3,blat.proc3825170.chain_1831	3	STRG.13269.2,blat.proc3825170.chain_1834	2
scaffold_24	alt_donor	1452917	1452918	+	asmbl_32077	none	STRG.26401.3,Trinity_GG_31891_c1_g1_i1,blat.proc3825176.chain_3349	3	STRG.26401.1	1
scaffold_6	spliced_intron	3291018	3291248	+	asmbl_46825,asmbl_46827,asmbl_46828	none	STRG.7335.1,blat.proc3825166.chain_3456,blat.proc3825166.chain_3457,blat.proc3825166.chain_3458	4	Trinity_GG_21301_c0_g1_i5,blat.proc3825166.chain_3459	2
scaffold_21	alt_acceptor	4600234	4600235	+	asmbl_28527	none	STRG.24013.3,blat.proc3825176.chain_1210	2	STRG.24013.2	1
scaffold_3	ends_in_intron	13991607	13991607	+	asmbl_40482	none	blat.proc3825166.chain_193	1	STRG.3744.1,STRG.3744.2,STRG.3744.4,STRG.3744.5,Trinity_GG_19386_c1_g1_i2	5
scaffold_6	starts_in_intron	3155650	3155650	-	asmbl_48226	none	blat.proc3825150.chain_3446	1	STRG.7316.1,blat.proc3825150.chain_3445	2
scaffold_15	retained_exon	2567077	2567199	-	asmbl_14021,asmbl_14022,asmbl_14023	none	STRG.18046.1,STRG.18046.3,blat.proc3825156.chain_2864,blat.proc3825156.chain_2866,blat.proc3825156.chain_2867	5	STRG.18046.2,blat.proc3825156.chain_2865	2
scaffold_8	ends_in_intron	3344352	3344352	+	asmbl_52757	none	STRG.9842.1	1	STRG.9842.2,blat.proc3825168.chain_2388	2
scaffold_6	starts_in_intron	8638632	8638632	-	asmbl_48575	none	STRG.7743.2,blat.proc3825152.chain_119	2	STRG.7743.1,blat.proc3825152.chain_120	2
scaffold_9	alt_acceptor	16764346	16764347	-	asmbl_55631	none	STRG.11822.1,blat.proc3825154.chain_317	2	STRG.11822.2	1
scaffold_23	alt_donor	806762	806763	-	asmbl_30609,asmbl_30610,asmbl_30611	none	STRG.25583.1,STRG.25583.2,STRG.25583.3	3	blat.proc3825160.chain_2754	1
scaffold_26	starts_in_intron	6646165	6646165	+	asmbl_35093	none	Trinity_GG_32962_c0_g1_i1,Trinity_GG_32962_c0_g1_i2,blat.proc3825178.chain_1404,blat.proc3825178.chain_1405	4	STRG.28352.1	1
scaffold_2	ends_in_intron	16854279	16854279	+	asmbl_25149	none	Trinity_GG_18794_c0_g1_i5,blat.proc3825164.chain_2901	2	STRG.2602.1,STRG.2602.2,STRG.2602.3,blat.proc3825164.chain_2898,blat.proc3825164.chain_2900,blat.proc3825164.chain_2902,blat.proc3825164.chain_2903	7
scaffold_17	spliced_intron	8848586	8849302	+	asmbl_19030	none	STRG.20496.2	1	STRG.20496.1,Trinity_GG_28544_c0_g1_i2	2
scaffold_14	retained_exon	14387178	14387238	+	asmbl_12544	none	STRG.17700.1	1	STRG.17700.2	1
scaffold_9	alt_donor	7032390	7032391	+	asmbl_54125	none	blat.proc3825170.chain_8	1	STRG.11219.1,blat.proc3825170.chain_9	2
scaffold_26	alternate_exon	9603990	9607416	+	asmbl_35249	none	STRG.28513.3	1	blat.proc3825178.chain_1634	1
scaffold_10	alt_acceptor	7672815	7672816	+	asmbl_3293	none	STRG.12556.4,Trinity_GG_24268_c0_g1_i5,blat.proc3825170.chain_1221	3	STRG.12556.3	1
scaffold_3	spliced_intron	6200887	6200973	-	asmbl_38921	none	STRG.3263.1	1	STRG.3263.2,STRG.3263.3,Trinity_GG_1767_c0_g1_i1,blat.proc3825148.chain_3109	4
scaffold_12	skipped_exon	13030949	13031704	-	asmbl_8903,asmbl_8904	none	STRG.15189.1,STRG.15189.2	2	blat.proc3825154.chain_3690	1
scaffold_21	alternate_exon	7812847	7812885	-	asmbl_27855	none	STRG.24317.3	1	STRG.24317.1,Trinity_GG_13547_c1_g1_i1,blat.proc3825160.chain_1429	3
scaffold_9	alternate_exon	571768	573160	+	asmbl_53773	none	Trinity_GG_23309_c0_g1_i4,blat.proc3825168.chain_3341	2	STRG.10788.2	1
scaffold_4	retained_exon	16371629	16371682	-	asmbl_43162	none	STRG.5206.1,blat.proc3825150.chain_1360	2	STRG.5206.2	1
scaffold_18	alternate_exon	3917226	3917456	-	asmbl_19787	none	STRG.21203.1	1	STRG.21203.2,STRG.21203.3,STRG.21203.4,STRG.21203.5,blat.proc3825158.chain_2160	5
scaffold_12	spliced_intron	7422321	7422559	-	asmbl_8585	none	STRG.14825.3,blat.proc3825154.chain_3337	2	STRG.14825.1,blat.proc3825154.chain_3339,blat.proc3825154.chain_3340,blat.proc3825154.chain_3341	4
scaffold_9	starts_in_intron	17489457	17489457	-	asmbl_55651,asmbl_55652	none	STRG.11845.1,Trinity_GG_6539_c0_g1_i2,blat.proc3825154.chain_311,blat.proc3825154.chain_312	4	STRG.11845.2,blat.proc3825154.chain_310	2
scaffold_8	retained_exon	17651896	17651979	-	asmbl_52476	none	STRG.10684.2,blat.proc3825152.chain_2954	2	STRG.10684.1,blat.proc3825152.chain_2953	2
scaffold_9	starts_in_intron	6920278	6920278	-	asmbl_55102	none	blat.proc3825152.chain_3452	1	STRG.11207.1,STRG.11207.2,blat.proc3825152.chain_3453,blat.proc3825152.chain_3454,blat.proc3825152.chain_3455	5
scaffold_26	retained_intron	4678864	4679059	-	asmbl_35583	none	STRG.28192.1	1	STRG.28192.2	1
scaffold_23	alt_donor	1860674	1860675	+	asmbl_31364	none	Trinity_GG_31477_c0_g1_i1,blat.proc3825176.chain_2620	2	STRG.25670.1,Trinity_GG_31477_c0_g1_i2,blat.proc3825176.chain_2619	3
scaffold_5	alt_donor	12829924	12829925	-	asmbl_44488	none	STRG.6515.1,blat.proc3825150.chain_2692	2	STRG.6515.2,STRG.6515.3,blat.proc3825150.chain_2693	3
scaffold_2	alt_donor	9300477	9300478	-	asmbl_23375	none	STRG.2174.2	1	STRG.2174.1,Trinity_GG_1209_c0_g1_i1,blat.proc3825148.chain_2193	3
scaffold_18	ends_in_intron	206774	206774	+	asmbl_20279	none	Trinity_GG_28858_c0_g1_i4,blat.proc3825174.chain_1922	2	STRG.20974.1,STRG.20974.2,STRG.20974.3,Trinity_GG_28858_c0_g1_i1,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1917,blat.proc3825174.chain_1918,blat.proc3825174.chain_1919,blat.proc3825174.chain_1920,blat.proc3825174.chain_1921,blat.proc3825174.chain_1923	11
scaffold_19	skipped_exon	12107338	12107894	-	asmbl_22456	none	STRG.22539.1,blat.proc3825158.chain_3191	2	STRG.22539.4,STRG.22539.5,blat.proc3825158.chain_3192	3
scaffold_20	alt_acceptor	4262257	4262258	-	asmbl_25731	none	STRG.23110.3	1	STRG.23110.1	1
scaffold_9	retained_intron	9657137	9657296	+	asmbl_54220,asmbl_54221,asmbl_54222,asmbl_54226	none	blat.proc3825170.chain_155,blat.proc3825170.chain_157,blat.proc3825170.chain_160,blat.proc3825170.chain_163	4	STRG.11344.1,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_158	4
scaffold_14	retained_intron	2374225	2374349	-	asmbl_12936,asmbl_12938,asmbl_12940	none	STRG.16854.1,STRG.16854.5,Trinity_GG_9462_c0_g1_i7	3	STRG.16854.2,STRG.16854.3,STRG.16854.4,STRG.16854.6,STRG.16854.7	5
scaffold_1	alternate_exon	12166861	12167253	+	asmbl_2188	none	STRG.837.1	1	blat.proc3825164.chain_1006,blat.proc3825164.chain_1008	2
scaffold_14	spliced_intron	218091	218231	-	asmbl_12805,asmbl_12806,asmbl_12807,asmbl_12809	none	STRG.16718.1,STRG.16718.2,STRG.16718.3,STRG.16718.4,blat.proc3825156.chain_1511,blat.proc3825156.chain_1512,blat.proc3825156.chain_1513	7	blat.proc3825156.chain_1514	1
scaffold_26	starts_in_intron	9772324	9772324	+	asmbl_35257	none	blat.proc3825178.chain_1642	1	STRG.28516.1,STRG.28516.2,STRG.28516.6,STRG.28516.7,blat.proc3825178.chain_1636,blat.proc3825178.chain_1638,blat.proc3825178.chain_1640,blat.proc3825178.chain_1641	8
scaffold_12	alt_donor	15265775	15265776	-	asmbl_9062,asmbl_9063,asmbl_9064	none	STRG.15338.1,STRG.15338.3,STRG.15338.4,Trinity_GG_8603_c0_g1_i1,blat.proc3825156.chain_178,blat.proc3825156.chain_180	6	STRG.15338.2	1
scaffold_13	spliced_intron	6602967	6603353	-	asmbl_9805	none	STRG.15949.2,blat.proc3825156.chain_790	2	STRG.15949.1,blat.proc3825156.chain_791	2
scaffold_7	alt_acceptor	133217	133218	-	asmbl_50665	none	STRG.8595.7	1	STRG.8595.2,STRG.8595.5	2
scaffold_12	alt_donor	8915537	8915538	+	asmbl_7839	none	STRG.14900.2	1	STRG.14900.1,blat.proc3825170.chain_3475	2
scaffold_10	spliced_intron	8905016	8905140	-	asmbl_4641,asmbl_4642	none	STRG.12635.1,STRG.12635.3,blat.proc3825154.chain_1178	3	STRG.12635.2	1
scaffold_5	alt_donor	11990894	11990895	-	asmbl_44436	none	blat.proc3825150.chain_2616	1	STRG.6453.8,blat.proc3825150.chain_2611,blat.proc3825150.chain_2613	3
scaffold_8	alternate_exon	16504948	16517926	-	asmbl_52420,asmbl_52421	none	STRG.10629.4,STRG.10629.5	2	STRG.10629.2	1
scaffold_13	alt_acceptor	3723700	3723701	+	asmbl_10727	none	STRG.15691.1	1	STRG.15691.2,blat.proc3825172.chain_329	2
scaffold_10	retained_intron	5006780	5006917	-	asmbl_4330	none	blat.proc3825154.chain_896	1	STRG.12325.1,STRG.12325.2,Trinity_GG_6889_c0_g1_i1,blat.proc3825154.chain_893,blat.proc3825154.chain_894,blat.proc3825154.chain_895	6
scaffold_17	alt_donor	11959876	11959877	-	asmbl_18304	none	STRG.20722.2,blat.proc3825158.chain_1752	2	STRG.20722.3,STRG.20722.5,blat.proc3825158.chain_1749	3
scaffold_10	alt_acceptor	17502975	17502976	+	asmbl_3779	none	STRG.13203.1,Trinity_GG_24553_c0_g1_i1,blat.proc3825170.chain_1730	3	STRG.13203.2	1
scaffold_11	alternate_exon	3709231	3709601	-	asmbl_6560	none	Trinity_GG_7547_c1_g1_i2,blat.proc3825154.chain_2045	2	STRG.13492.3	1
scaffold_23	alternate_exon	6861417	6861750	-	asmbl_30987	none	STRG.26018.4,blat.proc3825160.chain_3207	2	STRG.26018.3	1
scaffold_9	alt_acceptor	8094222	8094223	-	asmbl_55122	none	STRG.11242.2	1	STRG.11242.1,blat.proc3825152.chain_3466	2
scaffold_2	spliced_intron	4018804	4018989	-	asmbl_23038	none	STRG.1846.2	1	blat.proc3825148.chain_1814	1
scaffold_17	alternate_exon	13171853	13171884	-	asmbl_18354	none	Trinity_GG_11692_c0_g1_i1,blat.proc3825158.chain_1811	2	STRG.20809.1,blat.proc3825158.chain_1812	2
scaffold_1	alt_donor	20687849	20687850	-	asmbl_1188	none	blat.proc3825148.chain_1342	1	STRG.1410.1	1
scaffold_7	starts_in_intron	7642914	7642914	-	asmbl_50961	none	blat.proc3825152.chain_1355	1	STRG.9019.1,blat.proc3825152.chain_1356	2
scaffold_27	alternate_exon	4807715	4807747	+	asmbl_36321	none	blat.proc3825178.chain_2141,blat.proc3825178.chain_2142	2	STRG.28926.1,Trinity_GG_33330_c0_g1_i2,blat.proc3825178.chain_2140,blat.proc3825178.chain_2144	4
scaffold_13	retained_intron	2337673	2338404	+	asmbl_10596,asmbl_10597	none	STRG.15564.10,STRG.15564.8,Trinity_GG_25824_c1_g1_i1,blat.proc3825172.chain_233	4	STRG.15564.9	1
scaffold_6	spliced_intron	18883925	18883950	-	asmbl_49284	none	STRG.8557.2	1	STRG.8557.1,Trinity_GG_4878_c0_g1_i1	2
scaffold_5	alt_acceptor	8910827	8910828	-	asmbl_44254	none	STRG.6230.1,blat.proc3825150.chain_2439	2	STRG.6230.2,blat.proc3825150.chain_2440	2
scaffold_18	alternate_exon	7174939	7175089	-	asmbl_19926,asmbl_19929	none	STRG.21417.2,STRG.21417.3,Trinity_GG_11987_c0_g1_i5,blat.proc3825158.chain_2335	4	STRG.21417.1,Trinity_GG_11987_c0_g1_i3,blat.proc3825158.chain_2333	3
scaffold_2	skipped_exon	10878302	10880126	+	asmbl_24735	none	STRG.2245.2,blat.proc3825164.chain_2436	2	STRG.2245.1,Trinity_GG_18581_c0_g1_i6,blat.proc3825164.chain_2437,blat.proc3825164.chain_2438	4
scaffold_15	alt_donor	1504655	1504656	-	asmbl_13957	none	STRG.17963.2,blat.proc3825156.chain_2765	2	STRG.17963.1,blat.proc3825156.chain_2766,blat.proc3825156.chain_2769	3
scaffold_20	retained_intron	4262257	4262277	-	asmbl_25730	none	STRG.23110.1	1	STRG.23110.2	1
scaffold_4	starts_in_intron	5243387	5243387	-	asmbl_42584	none	blat.proc3825150.chain_600	1	STRG.4419.1,blat.proc3825150.chain_598,blat.proc3825150.chain_599	3
scaffold_10	alt_acceptor	4050988	4050989	+	asmbl_3101,asmbl_3102,asmbl_3103	none	STRG.12245.1,Trinity_GG_24107_c0_g1_i1,Trinity_GG_24107_c0_g1_i2,Trinity_GG_24107_c0_g1_i3,blat.proc3825170.chain_953,blat.proc3825170.chain_954,blat.proc3825170.chain_955	7	STRG.12245.2	1
scaffold_2	retained_intron	2958099	2958664	+	asmbl_24257	none	STRG.1728.1,Trinity_GG_18264_c0_g1_i1,blat.proc3825164.chain_1841,blat.proc3825164.chain_1842	4	STRG.1728.2	1
scaffold_14	alt_acceptor	11139591	11139592	-	asmbl_13450	none	blat.proc3825156.chain_2250	1	STRG.17450.3,blat.proc3825156.chain_2248	2
scaffold_21	starts_in_intron	8317001	8317001	-	asmbl_27923	none	blat.proc3825160.chain_1522	1	STRG.24374.1,blat.proc3825160.chain_1523	2
scaffold_4	retained_exon	17129029	17129156	-	asmbl_43258	none	STRG.5313.2,blat.proc3825150.chain_1491	2	STRG.5313.1,Trinity_GG_2969_c0_g1_i2	2
scaffold_13	retained_intron	274732	275404	+	asmbl_10468,asmbl_10472	none	STRG.15434.2,blat.proc3825172.chain_195,blat.proc3825172.chain_197	3	STRG.15434.3,blat.proc3825172.chain_196	2
scaffold_4	ends_in_intron	10857058	10857058	+	asmbl_41679	none	Trinity_GG_20013_c0_g2_i1	1	STRG.4807.2,STRG.4807.3,blat.proc3825166.chain_1275	3
scaffold_12	retained_intron	14289469	14289681	-	asmbl_9005,asmbl_9008	none	Trinity_GG_8552_c0_g1_i1,blat.proc3825156.chain_65,blat.proc3825156.chain_66	3	STRG.15271.1,STRG.15271.2,STRG.15271.3,blat.proc3825156.chain_64,blat.proc3825156.chain_67	5
scaffold_14	retained_intron	7495217	7495629	+	asmbl_12168	none	STRG.17193.1,blat.proc3825172.chain_1881	2	STRG.17193.2,Trinity_GG_26725_c1_g1_i2,blat.proc3825172.chain_1882	3
scaffold_6	retained_exon	14594006	14594041	+	asmbl_47631	none	STRG.8222.3	1	STRG.8222.1,blat.proc3825168.chain_720	2
scaffold_8	retained_exon	11110926	11111044	+	asmbl_53197	none	STRG.10324.3,blat.proc3825168.chain_2896	2	STRG.10324.1,blat.proc3825168.chain_2894	2
scaffold_43	alt_donor	874	875	-	asmbl_43698	none	STRG.30047.6	1	STRG.30047.2,STRG.30047.7	2
scaffold_21	retained_exon	256707	256741	-	asmbl_27290	none	blat.proc3825160.chain_805	1	STRG.23725.5,blat.proc3825160.chain_811,blat.proc3825160.chain_812	3
scaffold_5	starts_in_intron	8786887	8786887	+	asmbl_45574,asmbl_45575	none	Trinity_GG_20718_c0_g1_i3,Trinity_GG_20718_c0_g1_i5,blat.proc3825166.chain_2447,blat.proc3825166.chain_2449	4	STRG.6219.1,blat.proc3825166.chain_2446	2
scaffold_17	alt_donor	13072771	13072772	-	asmbl_18347	none	STRG.20802.2	1	STRG.20802.1,blat.proc3825158.chain_1806	2
scaffold_14	starts_in_intron	5951183	5951183	+	asmbl_12046	none	blat.proc3825172.chain_1820	1	STRG.17068.1,STRG.17068.2,blat.proc3825172.chain_1819	3
scaffold_4	retained_intron	4416472	4417089	+	asmbl_41250,asmbl_41256,asmbl_41257,asmbl_41261	none	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_847,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	5	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,blat.proc3825166.chain_842,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_851,blat.proc3825166.chain_852	11
scaffold_11	retained_intron	10145073	10145116	-	asmbl_6982	none	Trinity_GG_7815_c0_g1_i1	1	STRG.14028.1,STRG.14028.2	2
scaffold_14	alt_donor	11439773	11439774	-	asmbl_13485	none	STRG.17475.2	1	STRG.17475.1,blat.proc3825156.chain_2281	2
scaffold_6	retained_intron	4832299	4832373	-	asmbl_48361	none	blat.proc3825150.chain_3628	1	STRG.7461.1,blat.proc3825150.chain_3627	2
scaffold_26	retained_intron	5045661	5045778	+	asmbl_34957	none	blat.proc3825178.chain_1174	1	STRG.28240.1,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1170,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179	9
scaffold_1	starts_in_intron	11551676	11551676	-	asmbl_628	none	STRG.760.1,Trinity_GG_393_c0_g1_i3,blat.proc3825148.chain_733	3	STRG.760.2	1
scaffold_1	spliced_intron	3681459	3682104	+	asmbl_1630	none	blat.proc3825164.chain_371	1	STRG.242.1,STRG.242.2,blat.proc3825164.chain_366,blat.proc3825164.chain_367,blat.proc3825164.chain_368,blat.proc3825164.chain_370,blat.proc3825164.chain_372	7
scaffold_18	starts_in_intron	11642191	11642191	+	asmbl_20950	none	Trinity_GG_29290_c0_g1_i3,blat.proc3825174.chain_2713	2	STRG.21687.1,Trinity_GG_29290_c0_g1_i1,blat.proc3825174.chain_2712	3
scaffold_14	alternate_exon	7452207	7452301	-	asmbl_13203,asmbl_13205	none	STRG.17187.1,blat.proc3825156.chain_1982,blat.proc3825156.chain_1983	3	STRG.17187.2	1
scaffold_9	skipped_exon	4898798	4899430	+	asmbl_53968	none	STRG.11064.2	1	blat.proc3825168.chain_3562	1
scaffold_24	retained_intron	3335564	3335692	+	asmbl_32141	none	blat.proc3825176.chain_3412	1	STRG.26531.1,blat.proc3825176.chain_3411	2
scaffold_7	spliced_intron	12387853	12388141	-	asmbl_51204,asmbl_51205,asmbl_51208,asmbl_51210	none	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1661	5	blat.proc3825152.chain_1655,blat.proc3825152.chain_1657,blat.proc3825152.chain_1660	3
scaffold_9	starts_in_intron	5550510	5550510	-	asmbl_55010	none	STRG.11127.2	1	STRG.11127.1,blat.proc3825152.chain_3407,blat.proc3825152.chain_3410,blat.proc3825152.chain_3411	4
scaffold_9	alt_acceptor	11829822	11829823	-	asmbl_55319	none	STRG.11499.2	1	STRG.11499.1	1
scaffold_3	alternate_exon	6183393	6184095	-	asmbl_38915	none	STRG.3266.5	1	STRG.3266.1,STRG.3266.2,STRG.3266.4,blat.proc3825148.chain_3119,blat.proc3825148.chain_3120,blat.proc3825148.chain_3122,blat.proc3825148.chain_3124,blat.proc3825148.chain_3125	8
scaffold_20	retained_exon	6655900	6656024	-	asmbl_25843,asmbl_25844,asmbl_25845	none	STRG.23241.1,STRG.23241.2,blat.proc3825160.chain_350,blat.proc3825160.chain_351	4	blat.proc3825160.chain_352	1
scaffold_7	retained_intron	5910425	5910739	-	asmbl_50897	none	STRG.8896.1,blat.proc3825152.chain_1331	2	STRG.8896.2	1
scaffold_9	ends_in_intron	1827369	1827369	-	asmbl_54848	none	Trinity_GG_6044_c0_g1_i2,blat.proc3825152.chain_3133	2	blat.proc3825152.chain_3132,blat.proc3825152.chain_3134	2
scaffold_2	ends_in_intron	2872391	2872391	-	asmbl_22930	none	blat.proc3825148.chain_1665	1	STRG.1736.2,blat.proc3825148.chain_1661,blat.proc3825148.chain_1664	3
scaffold_3	retained_intron	1089700	1089735	+	asmbl_39830	none	STRG.2937.2	1	STRG.2937.1,STRG.2937.3,blat.proc3825164.chain_3168	3
scaffold_14	retained_exon	6449925	6450069	-	asmbl_13134	none	STRG.17095.1,blat.proc3825156.chain_1922	2	STRG.17095.2	1
scaffold_4	spliced_intron	18282392	18282451	+	asmbl_42086	none	STRG.5424.1	1	Trinity_GG_20284_c0_g1_i1,blat.proc3825166.chain_1717,blat.proc3825166.chain_1718	3
scaffold_13	starts_in_intron	16460806	16460806	-	asmbl_10304	none	blat.proc3825156.chain_1485	1	STRG.16703.1,STRG.16703.2,STRG.16703.3,STRG.16703.4,Trinity_GG_9330_c0_g1_i5,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1486,blat.proc3825156.chain_1488,blat.proc3825156.chain_1489	9
scaffold_2	skipped_exon	9195241	9195673	-	asmbl_23360,asmbl_23363	none	STRG.2171.2,blat.proc3825148.chain_2199,blat.proc3825148.chain_2201	3	STRG.2171.1,blat.proc3825148.chain_2197,blat.proc3825148.chain_2198,blat.proc3825148.chain_2202	4
scaffold_25	retained_intron	8705024	8705177	+	asmbl_33753,asmbl_33754	none	Trinity_GG_32580_c0_g1_i11,Trinity_GG_32580_c0_g1_i5,blat.proc3825178.chain_763,blat.proc3825178.chain_764	4	STRG.27702.3,blat.proc3825178.chain_771	2
scaffold_5	spliced_intron	5060700	5061166	+	asmbl_45338,asmbl_45340	none	STRG.5963.1,STRG.5963.2,blat.proc3825166.chain_2192	3	STRG.5963.3,STRG.5963.4,Trinity_GG_20579_c0_g1_i2,blat.proc3825166.chain_2190	4
scaffold_6	spliced_intron	8643223	8643354	+	asmbl_47168	none	STRG.7754.1,blat.proc3825168.chain_190	2	blat.proc3825168.chain_188	1
scaffold_12	spliced_intron	4721793	4722413	-	asmbl_8431,asmbl_8432,asmbl_8435,asmbl_8436	none	STRG.14649.2,STRG.14649.3,STRG.14649.4,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	6	STRG.14649.1,blat.proc3825154.chain_3100	2
scaffold_24	ends_in_intron	6832154	6832154	+	asmbl_32352	none	STRG.26736.3,blat.proc3825176.chain_3731	2	STRG.26736.1,STRG.26736.2,STRG.26736.4,blat.proc3825176.chain_3729,blat.proc3825176.chain_3730,blat.proc3825176.chain_3732,blat.proc3825176.chain_3734	7
scaffold_1	alternate_exon	20134621	20134693	-	asmbl_1175	none	blat.proc3825148.chain_1398	1	STRG.1386.7	1
scaffold_1	retained_exon	15306266	15306424	-	asmbl_954	none	STRG.1100.1,blat.proc3825148.chain_965	2	STRG.1100.2	1
scaffold_6	alternate_exon	12631512	12633966	+	asmbl_47427	none	STRG.8022.1	1	STRG.8022.3,Trinity_GG_21679_c0_g1_i3,blat.proc3825168.chain_424	3
scaffold_25	retained_intron	3186833	3186999	-	asmbl_34110,asmbl_34113	none	STRG.27258.2,STRG.27258.3,blat.proc3825162.chain_576	3	STRG.27258.1,blat.proc3825162.chain_577,blat.proc3825162.chain_578	3
scaffold_7	starts_in_intron	1219598	1219598	+	asmbl_49585	none	STRG.8629.3	1	STRG.8629.1,STRG.8629.2,Trinity_GG_22054_c0_g1_i2,Trinity_GG_22054_c0_g1_i4	4
scaffold_5	retained_intron	188214	188267	+	asmbl_45086,asmbl_45087,asmbl_45088	none	STRG.5587.1,STRG.5587.2,STRG.5587.3	3	STRG.5587.4,STRG.5587.5	2
scaffold_10	alt_acceptor	1976637	1976638	-	asmbl_4087	none	STRG.12049.1,blat.proc3825154.chain_607	2	STRG.12049.3	1
scaffold_28	spliced_intron	3037644	3038209	-	asmbl_38128	none	blat.proc3825162.chain_2692	1	STRG.29510.1,Trinity_GG_16557_c0_g1_i2,blat.proc3825162.chain_2693	3
scaffold_4	spliced_intron	8746286	8746309	+	asmbl_41574	none	STRG.4690.1	1	blat.proc3825166.chain_1121	1
scaffold_5	starts_in_intron	13028207	13028207	+	asmbl_45842	none	Trinity_GG_20868_c0_g1_i2,blat.proc3825166.chain_2717	2	STRG.6534.1,Trinity_GG_20868_c0_g1_i1,blat.proc3825166.chain_2718	3
scaffold_5	spliced_intron	18261385	18261769	+	asmbl_46235,asmbl_46236,asmbl_46238,asmbl_46239,asmbl_46240,asmbl_46241	none	STRG.6968.1,STRG.6968.2,STRG.6968.4,blat.proc3825166.chain_3184,blat.proc3825166.chain_3187,blat.proc3825166.chain_3188,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	8	STRG.6968.3	1
scaffold_25	alt_acceptor	5827765	5827766	-	asmbl_34291	none	blat.proc3825162.chain_876	1	STRG.27479.1,STRG.27479.2,STRG.27479.3,STRG.27479.4,blat.proc3825162.chain_877,blat.proc3825162.chain_878	6
scaffold_2	alternate_exon	7470021	7470198	-	asmbl_23267	none	blat.proc3825148.chain_2062	1	STRG.2074.2,Trinity_GG_1141_c0_g1_i24,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2052,blat.proc3825148.chain_2057	5
scaffold_2	alternate_exon	14231966	14232018	-	asmbl_23589	none	STRG.2421.2	1	STRG.2421.1	1
scaffold_3	starts_in_intron	15867634	15867634	+	asmbl_40587	none	Trinity_GG_19493_c0_g1_i2,blat.proc3825166.chain_379	2	STRG.3866.1,Trinity_GG_19493_c0_g1_i3,blat.proc3825166.chain_377,blat.proc3825166.chain_378	4
scaffold_12	retained_intron	6429911	6430170	+	asmbl_7687	none	blat.proc3825170.chain_3264	1	STRG.14755.1,blat.proc3825170.chain_3263	2
scaffold_8	spliced_intron	4393829	4393852	+	asmbl_52847	none	STRG.9926.2	1	STRG.9926.1,Trinity_GG_22814_c1_g1_i2,Trinity_GG_22814_c1_g1_i3,blat.proc3825168.chain_2440	4
scaffold_7	retained_intron	9583534	9583622	+	asmbl_50082	none	STRG.9149.1,Trinity_GG_22392_c0_g1_i1,blat.proc3825168.chain_1665	3	STRG.9149.2,blat.proc3825168.chain_1666	2
scaffold_7	ends_in_intron	13211252	13211252	+	asmbl_50325	none	blat.proc3825168.chain_1943	1	STRG.9429.1,STRG.9429.2,STRG.9429.3,STRG.9429.4,blat.proc3825168.chain_1944,blat.proc3825168.chain_1945,blat.proc3825168.chain_1946,blat.proc3825168.chain_1947	8
scaffold_12	skipped_exon	4609577	4610289	-	asmbl_8416,asmbl_8417	none	STRG.14639.3,blat.proc3825154.chain_3142	2	STRG.14639.1,STRG.14639.2,blat.proc3825154.chain_3136,blat.proc3825154.chain_3137,blat.proc3825154.chain_3138	5
scaffold_26	spliced_intron	9315672	9315826	+	asmbl_35214,asmbl_35215,asmbl_35216,asmbl_35217,asmbl_35222,asmbl_35224	none	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	7	Trinity_GG_33078_c0_g1_i8,blat.proc3825178.chain_1613,blat.proc3825178.chain_1614,blat.proc3825178.chain_1615	4
scaffold_28	alternate_exon	5577305	5577492	+	asmbl_37594,asmbl_37597	none	STRG.29692.3,Trinity_GG_33772_c0_g1_i4,blat.proc3825178.chain_2878	3	STRG.29692.1,STRG.29692.2,Trinity_GG_33772_c0_g1_i1,Trinity_GG_33772_c0_g1_i2,Trinity_GG_33772_c0_g1_i5,blat.proc3825178.chain_2874,blat.proc3825178.chain_2876,blat.proc3825178.chain_2879	8
scaffold_10	starts_in_intron	13914735	13914735	+	asmbl_3632	none	blat.proc3825170.chain_1594	1	STRG.12983.1,blat.proc3825170.chain_1595	2
scaffold_6	spliced_intron	11489986	11490454	+	asmbl_47331,asmbl_47332,asmbl_47333	none	STRG.7943.3,STRG.7943.4,blat.proc3825168.chain_312	3	STRG.7943.1,STRG.7943.2,blat.proc3825168.chain_309,blat.proc3825168.chain_310,blat.proc3825168.chain_311,blat.proc3825168.chain_313,blat.proc3825168.chain_314	7
scaffold_5	spliced_intron	10382183	10382274	-	asmbl_44351,asmbl_44352	none	STRG.6339.1,STRG.6339.2	2	blat.proc3825150.chain_2516,blat.proc3825150.chain_2518	2
scaffold_17	skipped_exon	9032238	9033472	-	asmbl_18141,asmbl_18142	none	STRG.20532.5,STRG.20532.6	2	STRG.20532.1,STRG.20532.3,STRG.20532.4	3
scaffold_17	retained_intron	3989814	3990042	-	asmbl_17838	none	STRG.20158.4	1	STRG.20158.2,STRG.20158.3,blat.proc3825158.chain_1211	3
scaffold_14	spliced_intron	3590570	3591023	+	asmbl_11957	none	STRG.16945.1	1	STRG.16945.2,Trinity_GG_26643_c1_g1_i1,blat.proc3825172.chain_1734	3
scaffold_21	retained_exon	737050	737193	+	asmbl_28296	none	STRG.23768.2,blat.proc3825176.chain_976	2	STRG.23768.1,Trinity_GG_30477_c0_g1_i2,blat.proc3825176.chain_975	3
scaffold_22	spliced_intron	11393079	11393144	-	asmbl_29672	none	blat.proc3825160.chain_2670	1	Trinity_GG_14242_c0_g1_i1	1
scaffold_2	spliced_intron	8055440	8055709	-	asmbl_23306	none	blat.proc3825148.chain_2117	1	STRG.2094.4,blat.proc3825148.chain_2118	2
scaffold_15	spliced_intron	9732951	9733059	-	asmbl_14405,asmbl_14408,asmbl_14409	none	STRG.18492.1,STRG.18492.2,STRG.18492.3,blat.proc3825156.chain_3291	4	STRG.18492.4,Trinity_GG_10360_c0_g1_i2,blat.proc3825156.chain_3289	3
scaffold_9	ends_in_intron	10924641	10924641	+	asmbl_54314	none	Trinity_GG_23673_c0_g1_i3,blat.proc3825170.chain_242	2	STRG.11406.1	1
scaffold_7	skipped_exon	12447826	12449542	-	asmbl_51234	none	STRG.9354.3	1	STRG.9354.1,STRG.9354.2,Trinity_GG_5252_c0_g1_i10,Trinity_GG_5252_c0_g1_i20,blat.proc3825152.chain_1688	5
scaffold_23	retained_exon	7632771	7632815	-	asmbl_31041	none	STRG.26076.1,blat.proc3825160.chain_3259	2	STRG.26076.2,STRG.26076.3,blat.proc3825160.chain_3258	3
scaffold_11	spliced_intron	7819465	7819560	+	asmbl_5681	none	STRG.13786.2,Trinity_GG_24901_c0_g1_i1,blat.proc3825170.chain_2319	3	STRG.13786.1,Trinity_GG_24901_c0_g1_i2,blat.proc3825170.chain_2318	3
scaffold_13	alt_donor	1380176	1380177	-	asmbl_9408	none	STRG.15508.1	1	STRG.15508.2,blat.proc3825156.chain_340,blat.proc3825156.chain_342	3
scaffold_18	starts_in_intron	8403174	8403174	+	asmbl_20833	none	Trinity_GG_29216_c0_g2_i1,blat.proc3825174.chain_2584	2	STRG.21513.1,STRG.21513.2,STRG.21513.3,STRG.21513.4,STRG.21513.5,STRG.21513.6,blat.proc3825174.chain_2580,blat.proc3825174.chain_2581,blat.proc3825174.chain_2582,blat.proc3825174.chain_2583	10
scaffold_18	skipped_exon	4463410	4465472	+	asmbl_20523,asmbl_20525	none	STRG.21238.1,blat.proc3825174.chain_2190,blat.proc3825174.chain_2191	3	STRG.21238.2,blat.proc3825174.chain_2189	2
scaffold_9	starts_in_intron	8941667	8941667	-	asmbl_55149	none	blat.proc3825152.chain_3429	1	STRG.11280.1,STRG.11280.2,blat.proc3825152.chain_3426,blat.proc3825152.chain_3427	4
scaffold_7	alt_acceptor	12840661	12840662	-	asmbl_51268,asmbl_51269	none	STRG.9401.2,STRG.9401.3,Trinity_GG_5277_c0_g1_i1,blat.proc3825152.chain_1745,blat.proc3825152.chain_1746	5	STRG.9401.4,blat.proc3825152.chain_1744	2
scaffold_7	retained_intron	2509920	2510016	-	asmbl_50759	none	Trinity_GG_4956_c0_g1_i1,blat.proc3825152.chain_1163	2	Trinity_GG_4956_c0_g1_i3,blat.proc3825152.chain_1162	2
scaffold_7	retained_exon	17610793	17610957	+	asmbl_50487	none	STRG.9612.2	1	STRG.9612.1,blat.proc3825168.chain_2069	2
scaffold_6	ends_in_intron	6004309	6004309	-	asmbl_48445	none	blat.proc3825150.chain_3739	1	STRG.7551.1,blat.proc3825150.chain_3738	2
scaffold_21	starts_in_intron	7521271	7521271	+	asmbl_28747	none	blat.proc3825176.chain_1503	1	STRG.24289.1,STRG.24289.2,blat.proc3825176.chain_1502	3
scaffold_10	spliced_intron	8916906	8917220	+	asmbl_3341,asmbl_3342,asmbl_3343	none	STRG.12642.1,STRG.12642.2,blat.proc3825170.chain_1194,blat.proc3825170.chain_1196,blat.proc3825170.chain_1197	5	Trinity_GG_24252_c0_g1_i4,blat.proc3825170.chain_1195	2
scaffold_340	alt_donor	4314	4315	+	asmbl_41016	none	Trinity_GG_34082_c0_g1_i1,blat.proc3825178.chain_3388	2	STRG.30296.1	1
scaffold_15	spliced_intron	15856548	15857174	+	asmbl_15819,asmbl_15820,asmbl_15821,asmbl_15823,asmbl_15824	none	STRG.18973.1,STRG.18973.2,STRG.18973.3,STRG.18973.5,Trinity_GG_27688_c0_g1_i10,Trinity_GG_27688_c0_g1_i12,Trinity_GG_27688_c0_g1_i5,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3569,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3576,blat.proc3825172.chain_3578	13	blat.proc3825172.chain_3572,blat.proc3825172.chain_3573	2
scaffold_18	spliced_intron	3220749	3220823	+	asmbl_20451	none	STRG.21164.1,blat.proc3825174.chain_2095	2	blat.proc3825174.chain_2094	1
scaffold_3	retained_exon	6043347	6043728	-	asmbl_38879	none	STRG.3259.1	1	STRG.3259.4,STRG.3259.6,STRG.3259.7	3
scaffold_10	alt_donor	7684958	7684959	+	asmbl_3299	none	blat.proc3825170.chain_1171	1	STRG.12557.2,STRG.12557.5,blat.proc3825170.chain_1166,blat.proc3825170.chain_1167,blat.proc3825170.chain_1170	5
scaffold_10	ends_in_intron	8330178	8330178	-	asmbl_4579	none	blat.proc3825154.chain_1184	1	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1182,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190,blat.proc3825154.chain_1192	6
scaffold_15	alt_acceptor	14327819	14327820	-	asmbl_14719	none	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2	Trinity_GG_10597_c0_g1_i1,blat.proc3825156.chain_3714	2
scaffold_3	skipped_exon	8532827	8533627	+	asmbl_40218	none	STRG.3424.2	1	STRG.3424.1	1
scaffold_12	starts_in_intron	16813162	16813162	+	asmbl_8192	none	Trinity_GG_25776_c0_g1_i1,blat.proc3825172.chain_117	2	STRG.15417.1	1
scaffold_1	spliced_intron	849299	849737	+	asmbl_1418,asmbl_1420,asmbl_1422	none	STRG.42.2,STRG.42.4,STRG.42.5,Trinity_GG_17343_c0_g1_i1,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_126,blat.proc3825164.chain_127	7	Trinity_GG_17343_c0_g1_i4,blat.proc3825164.chain_128	2
scaffold_4	alt_acceptor	7027762	7027763	+	asmbl_41443,asmbl_41444	none	STRG.4537.1,STRG.4537.2,blat.proc3825166.chain_995,blat.proc3825166.chain_996	4	blat.proc3825166.chain_997	1
scaffold_9	retained_exon	645343	645512	+	asmbl_53783	none	STRG.10793.2	1	STRG.10793.4	1
scaffold_2	alt_donor	18707654	18707655	+	asmbl_25230	none	STRG.2747.1,Trinity_GG_18855_c0_g1_i3,blat.proc3825164.chain_2995	3	STRG.2747.2,Trinity_GG_18855_c0_g1_i1,Trinity_GG_18855_c0_g1_i2,blat.proc3825164.chain_2994,blat.proc3825164.chain_2996	5
scaffold_18	spliced_intron	1499817	1499941	+	asmbl_20354	none	STRG.21034.1,Trinity_GG_28824_c0_g1_i1,blat.proc3825174.chain_1851	3	Trinity_GG_28824_c0_g1_i2,blat.proc3825174.chain_1849,blat.proc3825174.chain_1850	3
scaffold_25	starts_in_intron	3292331	3292331	-	asmbl_34119	none	STRG.27284.1	1	STRG.27284.2,STRG.27284.3,STRG.27284.4,STRG.27284.5,blat.proc3825162.chain_656,blat.proc3825162.chain_657	6
scaffold_21	alt_acceptor	8000621	8000622	-	asmbl_27882	none	STRG.24336.3,blat.proc3825160.chain_1502	2	STRG.24336.1,STRG.24336.2,blat.proc3825160.chain_1499,blat.proc3825160.chain_1501	4
scaffold_22	alternate_exon	5817621	5817793	-	asmbl_29286	none	STRG.24930.1	1	STRG.24930.2	1
scaffold_7	alt_acceptor	9909189	9909190	-	asmbl_51098	none	STRG.9200.1,blat.proc3825152.chain_1550	2	STRG.9200.2	1
scaffold_4	retained_exon	18557617	18557778	-	asmbl_43380,asmbl_43382,asmbl_43383	none	STRG.5460.1,STRG.5460.2,blat.proc3825150.chain_1651,blat.proc3825150.chain_1652	4	blat.proc3825150.chain_1650	1
scaffold_9	alternate_exon	15278706	15278871	+	asmbl_54551	none	STRG.11722.2,blat.proc3825170.chain_507	2	STRG.11722.1,blat.proc3825170.chain_506	2
scaffold_21	retained_intron	5594441	5594553	-	asmbl_27678	none	Trinity_GG_13438_c0_g1_i2,blat.proc3825160.chain_1253	2	STRG.24091.1,blat.proc3825160.chain_1252	2
scaffold_16	ends_in_intron	7946818	7946818	-	asmbl_17208	none	STRG.19438.2,blat.proc3825158.chain_587	2	STRG.19438.1	1
scaffold_10	alt_donor	8546482	8546483	-	asmbl_4597,asmbl_4598	none	STRG.12610.3,blat.proc3825154.chain_1228,blat.proc3825154.chain_1230	3	Trinity_GG_7055_c0_g1_i1	1
scaffold_15	skipped_exon	12390490	12391553	-	asmbl_14575	none	STRG.18695.2	1	STRG.18695.3	1
scaffold_3	alt_acceptor	16072122	16072123	+	asmbl_40604,asmbl_40606	none	STRG.3889.1,blat.proc3825166.chain_374,blat.proc3825166.chain_375	3	STRG.3889.2,STRG.3889.3,blat.proc3825166.chain_376	3
scaffold_20	retained_intron	1490221	1490256	+	asmbl_26415,asmbl_26416,asmbl_26419	none	STRG.22869.3,STRG.22869.4,STRG.22869.6	3	STRG.22869.1,STRG.22869.2	2
scaffold_21	retained_intron	7420548	7420652	-	asmbl_27811	none	blat.proc3825160.chain_1448	1	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1445,blat.proc3825160.chain_1446	5
scaffold_27	alternate_exon	327897	328178	-	asmbl_36666	none	STRG.28560.1,Trinity_GG_15979_c0_g1_i4,blat.proc3825162.chain_1786	3	STRG.28560.2,blat.proc3825162.chain_1785	2
scaffold_23	starts_in_intron	5764877	5764877	-	asmbl_30943	none	STRG.25951.1,blat.proc3825160.chain_3139	2	STRG.25951.2,STRG.25951.3,Trinity_GG_14536_c0_g2_i1,Trinity_GG_14536_c0_g2_i2,blat.proc3825160.chain_3140,blat.proc3825160.chain_3141	6
scaffold_15	ends_in_intron	488854	488854	+	asmbl_14978	none	blat.proc3825172.chain_2626	1	STRG.17910.1,blat.proc3825172.chain_2627	2
scaffold_27	starts_in_intron	4506293	4506293	+	asmbl_36293	none	Trinity_GG_33312_c0_g1_i1,blat.proc3825178.chain_2102	2	STRG.28902.2	1
scaffold_20	starts_in_intron	5908617	5908617	+	asmbl_26644	none	Trinity_GG_30120_c0_g1_i1,blat.proc3825176.chain_389	2	STRG.23196.1,STRG.23196.3	2
scaffold_25	ends_in_intron	4328331	4328331	-	asmbl_34179	none	Trinity_GG_15341_c0_g1_i2,blat.proc3825162.chain_729	2	STRG.27365.1,Trinity_GG_15341_c0_g1_i1,blat.proc3825162.chain_730	3
scaffold_13	alternate_exon	14863512	14863566	-	asmbl_10212,asmbl_10213	none	STRG.16531.3,blat.proc3825156.chain_1362	2	STRG.16531.2,blat.proc3825156.chain_1363	2
scaffold_12	ends_in_intron	7538178	7538178	-	asmbl_8596	none	Trinity_GG_8290_c1_g1_i1,blat.proc3825154.chain_3376	2	STRG.14835.1,STRG.14835.2,STRG.14835.3,blat.proc3825154.chain_3373,blat.proc3825154.chain_3374,blat.proc3825154.chain_3375	6
scaffold_2	alt_donor	4443450	4443451	-	asmbl_23074	none	STRG.1873.1,blat.proc3825148.chain_1846	2	STRG.1873.2	1
scaffold_13	alt_acceptor	392800	392801	-	asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9352,asmbl_9353,asmbl_9354	none	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	25	STRG.15444.5	1
scaffold_12	starts_in_intron	4983310	4983310	+	asmbl_7625	none	Trinity_GG_25363_c0_g1_i7,blat.proc3825170.chain_3138	2	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3139,blat.proc3825170.chain_3140,blat.proc3825170.chain_3141	7
scaffold_18	alt_acceptor	5584689	5584690	-	asmbl_19862,asmbl_19863	none	STRG.21314.1,blat.proc3825158.chain_2238,blat.proc3825158.chain_2269,blat.proc3825158.chain_2270	4	STRG.21314.2	1
scaffold_8	alternate_exon	14404971	14405536	-	asmbl_52313	none	blat.proc3825152.chain_2649	1	STRG.10529.2	1
scaffold_16	spliced_intron	325937	326065	-	asmbl_16855,asmbl_16856,asmbl_16858,asmbl_16859,asmbl_16861	none	STRG.19029.1,STRG.19029.2,blat.proc3825158.chain_167,blat.proc3825158.chain_169,blat.proc3825158.chain_170,blat.proc3825158.chain_172	6	blat.proc3825158.chain_168,blat.proc3825158.chain_171	2
scaffold_3	retained_intron	17845439	17845840	+	asmbl_40706,asmbl_40708	none	STRG.4004.4,blat.proc3825166.chain_496	2	STRG.4004.2,STRG.4004.3,blat.proc3825166.chain_495	3
scaffold_3	ends_in_intron	10607046	10607046	-	asmbl_39102,asmbl_39104	none	blat.proc3825148.chain_3329,blat.proc3825148.chain_3330	2	STRG.3501.1,STRG.3501.2,blat.proc3825148.chain_3328	3
scaffold_21	spliced_intron	5169771	5169934	-	asmbl_27621,asmbl_27623,asmbl_27626,asmbl_27627	none	STRG.24060.1,blat.proc3825160.chain_1237,blat.proc3825160.chain_1240,blat.proc3825160.chain_1241,blat.proc3825160.chain_1242	5	blat.proc3825160.chain_1238,blat.proc3825160.chain_1239	2
scaffold_8	spliced_intron	11850873	11851005	+	asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53288,asmbl_53290,asmbl_53291	none	STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3015,blat.proc3825168.chain_3016,blat.proc3825168.chain_3019,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022,blat.proc3825168.chain_3023,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025,blat.proc3825168.chain_3027	12	STRG.10390.2,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021	3
scaffold_1	alt_acceptor	12956635	12956636	+	asmbl_2283,asmbl_2285	none	STRG.924.1,STRG.924.2,blat.proc3825164.chain_1090	3	STRG.924.3,blat.proc3825164.chain_1091	2
scaffold_5	retained_intron	2242543	2242602	-	asmbl_43884	none	STRG.5763.1,blat.proc3825150.chain_1959,blat.proc3825150.chain_1960	3	STRG.5763.2	1
scaffold_15	retained_intron	15435691	15435799	-	asmbl_14782,asmbl_14784,asmbl_14785,asmbl_14786,asmbl_14787,asmbl_14788	none	STRG.18932.1,STRG.18932.2,Trinity_GG_10599_c0_g1_i5,blat.proc3825156.chain_3727,blat.proc3825156.chain_3728,blat.proc3825156.chain_3729,blat.proc3825156.chain_3731,blat.proc3825156.chain_3732,blat.proc3825156.chain_3733	9	STRG.18932.3	1
scaffold_13	starts_in_intron	11541561	11541561	+	asmbl_11273	none	Trinity_GG_26235_c0_g1_i3,blat.proc3825172.chain_1023	2	STRG.16304.1,STRG.16304.2,Trinity_GG_26235_c0_g1_i1,Trinity_GG_26235_c0_g1_i6,Trinity_GG_26235_c0_g1_i7,blat.proc3825172.chain_1021,blat.proc3825172.chain_1022,blat.proc3825172.chain_1025,blat.proc3825172.chain_1026,blat.proc3825172.chain_1027	10
scaffold_28	alternate_exon	2343049	2349349	-	asmbl_38047	none	blat.proc3825162.chain_2609	1	Trinity_GG_16495_c0_g1_i3,blat.proc3825162.chain_2607,blat.proc3825162.chain_2608	3
scaffold_8	alternate_exon	4081394	4084348	+	asmbl_52809	none	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2480	3	blat.proc3825168.chain_2484	1
scaffold_9	alternate_exon	15496424	15504152	-	asmbl_55531	none	STRG.11747.3,blat.proc3825154.chain_218	2	STRG.11747.2,blat.proc3825154.chain_212	2
scaffold_7	starts_in_intron	10855643	10855643	-	asmbl_51141	none	blat.proc3825152.chain_1590	1	STRG.9246.1,blat.proc3825152.chain_1591	2
scaffold_2	alternate_exon	923764	933263	+	asmbl_24153,asmbl_24154,asmbl_24155,asmbl_24156	none	STRG.1570.1,STRG.1570.3,STRG.1570.6,blat.proc3825164.chain_1625,blat.proc3825164.chain_1630,blat.proc3825164.chain_1631,blat.proc3825164.chain_1632	7	STRG.1570.5	1
scaffold_16	spliced_intron	154458	154650	-	asmbl_16834	none	STRG.19010.1,Trinity_GG_10685_c0_g1_i8	2	Trinity_GG_10685_c0_g1_i4	1
scaffold_10	alt_acceptor	4035044	4035045	+	asmbl_3100	none	STRG.12244.2	1	STRG.12244.1,blat.proc3825170.chain_963	2
scaffold_5	ends_in_intron	11121882	11121882	-	asmbl_44403	none	blat.proc3825150.chain_2574	1	STRG.6402.1,blat.proc3825150.chain_2573	2
scaffold_5	alt_donor	13299975	13299976	+	asmbl_45876	none	STRG.6578.1	1	STRG.6578.2	1
scaffold_2	ends_in_intron	2333977	2333977	-	asmbl_22892	none	blat.proc3825148.chain_1624	1	STRG.1679.1,blat.proc3825148.chain_1625	2
scaffold_13	skipped_exon	15635633	15637556	+	asmbl_11522	none	STRG.16607.2	1	STRG.16607.3	1
scaffold_21	alt_donor	7008735	7008736	-	asmbl_27774	none	blat.proc3825160.chain_1391	1	STRG.24233.1,STRG.24233.2,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393,blat.proc3825160.chain_1394,blat.proc3825160.chain_1395	6
scaffold_22	alt_acceptor	10984457	10984458	-	asmbl_29637	none	Trinity_GG_14239_c1_g1_i1,blat.proc3825160.chain_2614	2	STRG.25437.1,STRG.25437.3,Trinity_GG_14239_c1_g1_i2,Trinity_GG_14239_c1_g1_i3,blat.proc3825160.chain_2613,blat.proc3825160.chain_2615	6
scaffold_14	spliced_intron	1069987	1070084	+	asmbl_11788,asmbl_11791,asmbl_11792,asmbl_11793,asmbl_11794,asmbl_11795,asmbl_11796,asmbl_11797,asmbl_11798	none	STRG.16766.1,STRG.16766.2,STRG.16766.3,STRG.16766.4,STRG.16766.5,blat.proc3825172.chain_1533,blat.proc3825172.chain_1535,blat.proc3825172.chain_1536,blat.proc3825172.chain_1537,blat.proc3825172.chain_1539	10	Trinity_GG_26535_c0_g1_i1,Trinity_GG_26535_c0_g1_i7,blat.proc3825172.chain_1534,blat.proc3825172.chain_1538	4
scaffold_11	spliced_intron	8790198	8790335	-	asmbl_6875	none	STRG.13904.3	1	STRG.13904.2	1
scaffold_13	alt_donor	10222043	10222044	-	asmbl_10051	none	STRG.16246.1,blat.proc3825156.chain_1141	2	STRG.16246.2	1
scaffold_21	retained_intron	256225	256484	-	asmbl_27290,asmbl_27292,asmbl_27293	none	blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	3	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806	8
scaffold_13	alt_donor	7443072	7443073	+	asmbl_11051	none	STRG.16040.1	1	STRG.16040.2,blat.proc3825172.chain_751,blat.proc3825172.chain_752	3
scaffold_1	retained_exon	5996766	5996816	-	asmbl_310	none	STRG.404.2,blat.proc3825148.chain_399	2	STRG.404.1,blat.proc3825148.chain_397,blat.proc3825148.chain_403	3
scaffold_28	alternate_exon	3732711	3746747	-	asmbl_38166	none	blat.proc3825162.chain_2739,blat.proc3825162.chain_2740	2	blat.proc3825162.chain_2733	1
scaffold_26	alt_donor	9008840	9008841	-	asmbl_35757	none	STRG.28466.2	1	STRG.28466.1,blat.proc3825162.chain_1677	2
scaffold_28	starts_in_intron	8319031	8319031	-	asmbl_38456	none	blat.proc3825162.chain_3081	1	STRG.29910.1,blat.proc3825162.chain_3080	2
scaffold_13	alternate_exon	16048915	16048928	+	asmbl_11549	none	blat.proc3825172.chain_1438	1	STRG.16642.2	1
scaffold_8	retained_exon	14569707	14569797	+	asmbl_53380,asmbl_53383	none	STRG.10543.1,STRG.10543.3,blat.proc3825168.chain_3106	3	STRG.10543.2	1
scaffold_15	retained_intron	1504460	1504656	-	asmbl_13956	none	Trinity_GG_10091_c0_g1_i1,Trinity_GG_10091_c0_g1_i4,blat.proc3825156.chain_2767,blat.proc3825156.chain_2768	4	STRG.17963.2,blat.proc3825156.chain_2765	2
scaffold_23	spliced_intron	7005777	7005932	-	asmbl_31005	none	STRG.26025.2	1	Trinity_GG_14528_c0_g1_i2,blat.proc3825160.chain_3122	2
scaffold_6	alternate_exon	2682164	2685746	-	asmbl_48144	none	STRG.7261.1,blat.proc3825150.chain_3375	2	STRG.7261.2	1
scaffold_23	ends_in_intron	7992047	7992047	-	asmbl_31071	none	blat.proc3825160.chain_3279	1	STRG.26108.1,blat.proc3825160.chain_3278	2
scaffold_27	starts_in_intron	3130463	3130463	+	asmbl_36187	none	Trinity_GG_33197_c2_g1_i1,blat.proc3825178.chain_1842	2	STRG.28805.3	1
scaffold_4	alternate_exon	12936858	12936913	-	asmbl_42960	none	STRG.4938.2,blat.proc3825150.chain_1051	2	STRG.4938.1,blat.proc3825150.chain_1052	2
scaffold_8	alternate_exon	16504948	16505055	-	asmbl_52409,asmbl_52419	none	Trinity_GG_5934_c0_g1_i12,blat.proc3825152.chain_2935,blat.proc3825152.chain_2941	3	STRG.10629.2,blat.proc3825152.chain_2932	2
scaffold_11	alt_acceptor	9051749	9051750	+	asmbl_5852	none	STRG.13934.1,Trinity_GG_24942_c0_g1_i1,blat.proc3825170.chain_2400	3	STRG.13934.2	1
scaffold_22	alt_acceptor	9340082	9340083	-	asmbl_29539	none	STRG.25279.3	1	STRG.25279.2	1
scaffold_21	alt_acceptor	10965526	10965527	+	asmbl_28900	none	STRG.24574.1,Trinity_GG_30885_c0_g1_i4,blat.proc3825176.chain_1688	3	STRG.24574.3	1
scaffold_5	alt_acceptor	15547175	15547176	-	asmbl_44699	none	STRG.6747.3	1	STRG.6747.1,STRG.6747.2,blat.proc3825150.chain_2941	3
scaffold_13	alt_acceptor	13283820	13283821	+	asmbl_11385	none	STRG.16401.2	1	STRG.16401.1,blat.proc3825172.chain_1194	2
scaffold_15	spliced_intron	5835875	5836379	+	asmbl_15228	none	Trinity_GG_27323_c0_g2_i1,blat.proc3825172.chain_2932	2	STRG.18265.1,Trinity_GG_27323_c0_g1_i1,blat.proc3825172.chain_2931	3
scaffold_12	skipped_exon	13030042	13031704	-	asmbl_8901	none	STRG.15189.3,blat.proc3825154.chain_3688	2	STRG.15189.1,STRG.15189.2,blat.proc3825154.chain_3690	3
scaffold_25	alternate_exon	638059	638159	-	asmbl_33994	none	STRG.27114.2,blat.proc3825162.chain_464	2	STRG.27114.1,blat.proc3825162.chain_463	2
scaffold_25	starts_in_intron	3486651	3486651	+	asmbl_33421	none	Trinity_GG_32343_c0_g1_i4,blat.proc3825178.chain_375	2	STRG.27296.1,blat.proc3825178.chain_374	2
scaffold_4	ends_in_intron	7092383	7092383	+	asmbl_41458	none	blat.proc3825166.chain_1044	1	STRG.4547.1,STRG.4547.2,STRG.4547.3,blat.proc3825166.chain_1040	4
scaffold_27	retained_intron	7277803	7277891	+	asmbl_36445	none	STRG.29091.1,Trinity_GG_33354_c0_g1_i1,blat.proc3825178.chain_2188	3	STRG.29091.2	1
scaffold_2	retained_intron	11668002	11668168	+	asmbl_24768	none	blat.proc3825164.chain_2463	1	STRG.2276.1,blat.proc3825164.chain_2461	2
scaffold_9	spliced_intron	15495374	15495474	-	asmbl_55530,asmbl_55532	none	STRG.11747.1,STRG.11747.2,blat.proc3825154.chain_212,blat.proc3825154.chain_215	4	Trinity_GG_6493_c0_g1_i10,blat.proc3825154.chain_217	2
scaffold_6	spliced_intron	8172176	8172279	-	asmbl_48538,asmbl_48541,asmbl_48542,asmbl_48543,asmbl_48544,asmbl_48545	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_87,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93	7	Trinity_GG_4351_c0_g1_i4,blat.proc3825152.chain_88,blat.proc3825152.chain_90	3
scaffold_1	starts_in_intron	14547024	14547024	-	asmbl_939	none	blat.proc3825148.chain_1067	1	STRG.1056.1,blat.proc3825148.chain_1066	2
scaffold_22	alt_donor	2399086	2399087	+	asmbl_29938,asmbl_29943	none	STRG.24781.1,blat.proc3825176.chain_1825	2	STRG.24781.2,blat.proc3825176.chain_1827,blat.proc3825176.chain_1828	3
scaffold_4	alternate_exon	16659266	16661305	+	asmbl_41995	none	blat.proc3825166.chain_1604	1	Trinity_GG_20222_c0_g1_i3,blat.proc3825166.chain_1601	2
scaffold_12	alternate_exon	6530063	6530108	+	asmbl_7694	none	STRG.14750.1,Trinity_GG_25445_c0_g1_i1,blat.proc3825170.chain_3267	3	STRG.14750.2	1
scaffold_8	spliced_intron	4340886	4341174	+	asmbl_52838	none	STRG.9915.2,blat.proc3825168.chain_2488	2	STRG.9915.3,blat.proc3825168.chain_2490	2
scaffold_3	alt_acceptor	14364969	14364970	-	asmbl_39368	none	STRG.3778.2	1	STRG.3778.1,Trinity_GG_2046_c0_g1_i1,blat.proc3825148.chain_3608	3
scaffold_25	starts_in_intron	3634284	3634284	+	asmbl_33441	none	blat.proc3825178.chain_430	1	STRG.27312.1,STRG.27312.2,STRG.27312.3,blat.proc3825178.chain_426,blat.proc3825178.chain_427,blat.proc3825178.chain_429,blat.proc3825178.chain_431,blat.proc3825178.chain_432	8
scaffold_2	alt_acceptor	686439	686440	+	asmbl_24095	none	STRG.1546.2	1	STRG.1546.1,blat.proc3825164.chain_1677	2
scaffold_10	ends_in_intron	11108306	11108306	+	asmbl_3452	none	STRG.12779.2	1	STRG.12779.1,blat.proc3825170.chain_1378	2
scaffold_4	spliced_intron	4112610	4112829	-	asmbl_42481	none	STRG.4317.2,blat.proc3825150.chain_482	2	blat.proc3825150.chain_475	1
scaffold_26	retained_exon	9840738	9841125	-	asmbl_35797	none	STRG.28545.2	1	STRG.28545.1,Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	3
scaffold_25	starts_in_intron	9044241	9044241	-	asmbl_34476,asmbl_34479	none	STRG.27715.3,blat.proc3825162.chain_1105,blat.proc3825162.chain_1107,blat.proc3825162.chain_1110	4	STRG.27715.1,STRG.27715.2,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106	4
scaffold_18	alt_acceptor	8382803	8382804	+	asmbl_20829	none	STRG.21510.2	1	STRG.21510.1,blat.proc3825174.chain_2571	2
scaffold_10	alt_donor	13002627	13002628	+	asmbl_3573	none	STRG.12909.3,blat.proc3825170.chain_1526	2	STRG.12909.2,blat.proc3825170.chain_1525	2
scaffold_18	retained_exon	4123158	4123280	+	asmbl_20497,asmbl_20498	none	STRG.21212.1,STRG.21212.2,Trinity_GG_28938_c0_g1_i1,Trinity_GG_28938_c0_g1_i2,blat.proc3825174.chain_2069,blat.proc3825174.chain_2070	6	STRG.21212.3,Trinity_GG_28938_c0_g1_i3,blat.proc3825174.chain_2071	3
scaffold_18	alt_donor	4074029	4074030	+	asmbl_20491,asmbl_20492	none	STRG.21207.2,STRG.21207.3	2	STRG.21207.1,STRG.21207.4	2
scaffold_24	spliced_intron	6225543	6225855	-	asmbl_32940,asmbl_32942,asmbl_32945,asmbl_32946,asmbl_32949	none	STRG.26685.1,STRG.26685.4,STRG.26685.5,STRG.26685.6,Trinity_GG_14882_c0_g1_i8,blat.proc3825160.chain_3734,blat.proc3825160.chain_3735,blat.proc3825160.chain_3737	8	STRG.26685.2,STRG.26685.3,STRG.26685.7,STRG.26685.8,Trinity_GG_14882_c0_g1_i10,blat.proc3825160.chain_3732,blat.proc3825160.chain_3733,blat.proc3825160.chain_3736	8
scaffold_28	ends_in_intron	8343879	8343879	-	asmbl_38461	none	Trinity_GG_16778_c1_g1_i1	1	STRG.29901.1	1
scaffold_6	alternate_exon	15797470	15798040	+	asmbl_47673	none	STRG.8319.2	1	STRG.8319.1,Trinity_GG_21860_c0_g1_i7,blat.proc3825168.chain_745	3
scaffold_1	spliced_intron	12334913	12335043	-	asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_714,asmbl_715,asmbl_716	none	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_831,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	10	Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_829,blat.proc3825148.chain_837	3
scaffold_2	spliced_intron	15272586	15272673	+	asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7	blat.proc3825164.chain_2615,blat.proc3825164.chain_2620,blat.proc3825164.chain_2622	3
scaffold_1	alt_donor	22134590	22134591	+	asmbl_2682	none	STRG.1487.3,Trinity_GG_18164_c1_g1_i1,blat.proc3825164.chain_1616	3	STRG.1487.2	1
scaffold_21	alt_acceptor	3167835	3167836	+	asmbl_28456,asmbl_28458,asmbl_28464,asmbl_28466,asmbl_28467,asmbl_28469	none	STRG.23959.1,STRG.23959.2,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1142	7	STRG.23959.3,STRG.23959.4,STRG.23959.5,blat.proc3825176.chain_1132,blat.proc3825176.chain_1141	5
scaffold_8	retained_exon	11853029	11853069	+	asmbl_53278,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53290,asmbl_53293	none	STRG.10390.3,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	4	STRG.10390.4,STRG.10390.5	2
scaffold_24	starts_in_intron	2352529	2352529	+	asmbl_32092	none	blat.proc3825176.chain_3391	1	STRG.26454.1	1
scaffold_7	starts_in_intron	18403164	18403164	+	asmbl_50523	none	Trinity_GG_22669_c0_g1_i1,blat.proc3825168.chain_2180	2	STRG.9669.1,STRG.9669.2,STRG.9669.3,blat.proc3825168.chain_2179,blat.proc3825168.chain_2181,blat.proc3825168.chain_2182	6
scaffold_12	retained_exon	9798633	9798739	+	asmbl_7878	none	STRG.14950.1,blat.proc3825170.chain_3438	2	STRG.14950.2	1
scaffold_11	retained_exon	8079171	8079244	-	asmbl_6824,asmbl_6825,asmbl_6827,asmbl_6832	none	STRG.13815.1,STRG.13815.3,STRG.13815.5,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i8,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2328,blat.proc3825154.chain_2330,blat.proc3825154.chain_2332	9	STRG.13815.2,STRG.13815.4,Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i3,blat.proc3825154.chain_2326,blat.proc3825154.chain_2333	6
scaffold_13	starts_in_intron	1235043	1235043	+	asmbl_10547,asmbl_10550,asmbl_10553	none	STRG.15494.5,STRG.15494.6,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_312	6	STRG.15494.1,STRG.15494.2,STRG.15494.4,blat.proc3825172.chain_311	4
scaffold_395	retained_exon	3388	3594	-	asmbl_41075	none	STRG.30306.1,blat.proc3825162.chain_3431	2	STRG.30306.2,Trinity_GG_17004_c0_g1_i1	2
scaffold_6	spliced_intron	17522323	17523320	+	asmbl_47762,asmbl_47764	none	STRG.8455.1,STRG.8455.4,blat.proc3825168.chain_892	3	STRG.8455.2,Trinity_GG_21946_c1_g1_i1,Trinity_GG_21946_c1_g1_i4,blat.proc3825168.chain_893,blat.proc3825168.chain_894	5
scaffold_8	alt_donor	9875712	9875713	+	asmbl_53127	none	STRG.10232.2,blat.proc3825168.chain_2798	2	STRG.10232.1,blat.proc3825168.chain_2797	2
scaffold_28	ends_in_intron	7359962	7359962	+	asmbl_37668	none	blat.proc3825178.chain_2955	1	STRG.29807.1,Trinity_GG_33819_c0_g1_i3,blat.proc3825178.chain_2956	3
scaffold_6	alt_acceptor	394190	394191	+	asmbl_46657	none	STRG.7104.1,blat.proc3825166.chain_3314	2	STRG.7104.2	1
scaffold_4	spliced_intron	6304956	6305145	+	asmbl_41389,asmbl_41394	none	STRG.4503.1,Trinity_GG_19783_c0_g1_i1,blat.proc3825166.chain_919,blat.proc3825166.chain_922	4	STRG.4503.2,STRG.4503.3,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_920,blat.proc3825166.chain_921	7
scaffold_12	ends_in_intron	14266104	14266104	+	asmbl_8080	none	STRG.15263.2,blat.proc3825170.chain_3704	2	STRG.15263.1,blat.proc3825170.chain_3703,blat.proc3825170.chain_3706	3
scaffold_12	retained_exon	1056309	1056406	+	asmbl_7457	none	STRG.14447.2	1	STRG.14447.3	1
scaffold_3	skipped_exon	6218352	6219358	-	asmbl_38929	none	STRG.3267.1	1	STRG.3267.2	1
scaffold_2	spliced_intron	9191729	9191859	-	asmbl_23359,asmbl_23360,asmbl_23362,asmbl_23363,asmbl_23366	none	STRG.2171.1,STRG.2171.2,blat.proc3825148.chain_2197,blat.proc3825148.chain_2198,blat.proc3825148.chain_2199,blat.proc3825148.chain_2201,blat.proc3825148.chain_2202	7	blat.proc3825148.chain_2200,blat.proc3825148.chain_2203	2
scaffold_14	spliced_intron	151803	151904	-	asmbl_12779,asmbl_12782,asmbl_12783	none	STRG.16711.5,STRG.16711.6,blat.proc3825156.chain_1518	3	STRG.16711.4,blat.proc3825156.chain_1519,blat.proc3825156.chain_1520	3
scaffold_2	retained_exon	1616827	1616879	-	asmbl_22860	none	STRG.1646.2,blat.proc3825148.chain_1565	2	blat.proc3825148.chain_1566	1
scaffold_24	alternate_exon	8738456	8738881	-	asmbl_33097,asmbl_33099,asmbl_33101	none	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_183	4	blat.proc3825162.chain_184	1
scaffold_15	starts_in_intron	13762623	13762623	-	asmbl_14667	none	blat.proc3825156.chain_3665	1	STRG.18808.2,STRG.18808.3,STRG.18808.4,blat.proc3825156.chain_3662,blat.proc3825156.chain_3663	5
scaffold_7	alt_donor	9716646	9716647	+	asmbl_50091	none	STRG.9161.1,blat.proc3825168.chain_1686	2	STRG.9161.2,blat.proc3825168.chain_1685	2
scaffold_18	starts_in_intron	11144332	11144332	+	asmbl_20934	none	Trinity_GG_29285_c0_g1_i2	1	STRG.21661.1,blat.proc3825174.chain_2705	2
scaffold_8	retained_intron	8901322	8902097	-	asmbl_51980	none	STRG.10146.2,blat.proc3825152.chain_2431	2	STRG.10146.1,blat.proc3825152.chain_2432	2
scaffold_5	retained_exon	187064	187093	+	asmbl_45086,asmbl_45088,asmbl_45089,asmbl_45090	none	STRG.5587.2,STRG.5587.3,STRG.5587.4,STRG.5587.5	4	STRG.5587.1	1
scaffold_4	starts_in_intron	18302870	18302870	-	asmbl_43359	none	blat.proc3825150.chain_1554	1	STRG.5433.1,blat.proc3825150.chain_1555	2
scaffold_26	alt_donor	5482951	5482952	+	asmbl_34994,asmbl_34996	none	STRG.28252.1,STRG.28252.3	2	STRG.28252.2,STRG.28252.4	2
scaffold_21	spliced_intron	7426114	7426200	-	asmbl_27810,asmbl_27812	none	blat.proc3825160.chain_1446,blat.proc3825160.chain_1447	2	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1445,blat.proc3825160.chain_1448	5
scaffold_11	starts_in_intron	587246	587246	+	asmbl_5294	none	Trinity_GG_24618_c0_g1_i1,blat.proc3825170.chain_1844	2	STRG.13274.1,blat.proc3825170.chain_1846	2
scaffold_10	retained_exon	13889899	13889981	-	asmbl_4937	none	STRG.12978.1,blat.proc3825154.chain_1564	2	STRG.12978.2	1
scaffold_3	ends_in_intron	3237909	3237909	+	asmbl_39936	none	Trinity_GG_19083_c4_g1_i1,blat.proc3825164.chain_3398	2	STRG.3072.1,STRG.3072.2,STRG.3072.3,Trinity_GG_19083_c0_g1_i3,blat.proc3825164.chain_3374,blat.proc3825164.chain_3376	6
scaffold_17	starts_in_intron	9533226	9533226	+	asmbl_19104	none	STRG.20578.4,blat.proc3825174.chain_1402	2	STRG.20578.1,STRG.20578.2,STRG.20578.3,Trinity_GG_28562_c0_g1_i2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1395,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	11
scaffold_7	retained_intron	1387124	1387457	-	asmbl_50723	none	blat.proc3825152.chain_1119	1	STRG.8652.1,STRG.8652.2,blat.proc3825152.chain_1117,blat.proc3825152.chain_1118,blat.proc3825152.chain_1123,blat.proc3825152.chain_1124	6
scaffold_3	alt_acceptor	5253767	5253768	+	asmbl_40066	none	STRG.3214.2	1	STRG.3214.1,Trinity_GG_19128_c1_g1_i1,blat.proc3825164.chain_3476	3
scaffold_15	spliced_intron	12742577	12743313	+	asmbl_15599	none	STRG.18732.1,blat.proc3825172.chain_3378	2	blat.proc3825172.chain_3377	1
scaffold_25	retained_intron	978574	978714	+	asmbl_33358	none	Trinity_GG_32255_c0_g1_i1,blat.proc3825178.chain_247	2	blat.proc3825178.chain_248	1
scaffold_2	alt_donor	14193808	14193809	-	asmbl_23569,asmbl_23570	none	blat.proc3825148.chain_2413,blat.proc3825148.chain_2414	2	STRG.2416.3	1
scaffold_20	alt_acceptor	2064125	2064126	+	asmbl_26462	none	STRG.22941.2	1	STRG.22941.1	1
scaffold_6	alternate_exon	18053849	18054030	-	asmbl_49226	none	STRG.8487.4	1	STRG.8487.1,STRG.8487.2,STRG.8487.3,blat.proc3825152.chain_918,blat.proc3825152.chain_919,blat.proc3825152.chain_920	6
scaffold_12	ends_in_intron	15087589	15087589	-	asmbl_9046	none	Trinity_GG_8545_c0_g1_i1,blat.proc3825156.chain_49	2	STRG.15320.1,STRG.15320.2,blat.proc3825156.chain_48	3
scaffold_13	ends_in_intron	396466	396466	-	asmbl_9340	none	Trinity_GG_8688_c1_g1_i1,blat.proc3825156.chain_372	2	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.5,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i3,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366,blat.proc3825156.chain_369,blat.proc3825156.chain_370,blat.proc3825156.chain_371	32
scaffold_10	spliced_intron	6447456	6447566	-	asmbl_4459	none	blat.proc3825154.chain_1039	1	blat.proc3825154.chain_1038,blat.proc3825154.chain_1040	2
scaffold_3	alt_acceptor	17834086	17834087	+	asmbl_40700	none	STRG.3996.2	1	STRG.3996.1,blat.proc3825166.chain_502,blat.proc3825166.chain_503,blat.proc3825166.chain_505	4
scaffold_15	alt_acceptor	9725625	9725626	+	asmbl_15406	none	STRG.18486.3	1	STRG.18486.1,blat.proc3825172.chain_3072	2
scaffold_3	ends_in_intron	7738044	7738044	+	asmbl_40180	none	blat.proc3825164.chain_3645	1	STRG.3365.1,STRG.3365.2,blat.proc3825164.chain_3644	3
scaffold_6	spliced_intron	3065689	3066024	+	asmbl_46809,asmbl_46810	none	STRG.7321.1,STRG.7321.2,blat.proc3825166.chain_3512,blat.proc3825166.chain_3513	4	STRG.7321.3,blat.proc3825166.chain_3514	2
scaffold_13	retained_exon	393534	393651	-	asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9351,asmbl_9352,asmbl_9353,asmbl_9354	none	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.5,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24	Trinity_GG_8688_c0_g1_i24,blat.proc3825156.chain_351	2
scaffold_1	alt_acceptor	5748750	5748751	+	asmbl_1785,asmbl_1787	none	STRG.378.1,STRG.378.2,blat.proc3825164.chain_516	3	STRG.378.3,blat.proc3825164.chain_513	2
scaffold_20	spliced_intron	240026	240046	-	asmbl_25471	none	STRG.22712.3	1	STRG.22712.4	1
scaffold_11	spliced_intron	4756929	4757259	+	asmbl_5518,asmbl_5520,asmbl_5521,asmbl_5522	none	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2116,blat.proc3825170.chain_2117,blat.proc3825170.chain_2118	5	Trinity_GG_24781_c1_g1_i1,blat.proc3825170.chain_2119	2
scaffold_14	alternate_exon	2486375	2486900	+	asmbl_11867	none	STRG.16863.1,Trinity_GG_26585_c1_g1_i1	2	Trinity_GG_26585_c1_g1_i2	1
scaffold_13	alt_acceptor	6137467	6137468	-	asmbl_9774	none	STRG.15919.2	1	STRG.15919.1,Trinity_GG_8952_c0_g1_i3,blat.proc3825156.chain_809	3
scaffold_3	retained_intron	15781656	15781744	-	asmbl_39452	none	blat.proc3825148.chain_3732	1	STRG.3859.1,STRG.3859.2,STRG.3859.3,blat.proc3825148.chain_3733	4
scaffold_1	alt_acceptor	9327714	9327715	+	asmbl_1986	none	STRG.634.2	1	STRG.634.1	1
scaffold_26	alternate_exon	9314034	9314112	+	asmbl_35216	none	blat.proc3825178.chain_1611	1	STRG.28487.1,STRG.28487.2,blat.proc3825178.chain_1610,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	6
scaffold_9	alt_acceptor	4160647	4160648	-	asmbl_54957	none	STRG.11019.1,blat.proc3825152.chain_3281	2	STRG.11019.2	1
scaffold_5	ends_in_intron	139197	139197	+	asmbl_45075	none	blat.proc3825166.chain_1881	1	blat.proc3825166.chain_1880	1
scaffold_26	alt_donor	3562965	3562966	+	asmbl_34791	none	STRG.28036.4	1	STRG.28036.1,STRG.28036.2	2
scaffold_19	ends_in_intron	13173420	13173420	+	asmbl_21867	none	blat.proc3825174.chain_3603	1	STRG.22641.1,Trinity_GG_29797_c0_g1_i3,blat.proc3825174.chain_3602,blat.proc3825174.chain_3604,blat.proc3825174.chain_3605	5
scaffold_17	alt_donor	936340	936341	+	asmbl_18580	none	STRG.19937.3	1	STRG.19937.1,STRG.19937.2,blat.proc3825174.chain_818,blat.proc3825174.chain_819	4
scaffold_14	retained_intron	14251277	14251622	-	asmbl_13683	none	STRG.17691.2,Trinity_GG_9954_c0_g1_i3,blat.proc3825156.chain_2542,blat.proc3825156.chain_2543	4	STRG.17691.1,blat.proc3825156.chain_2544	2
scaffold_16	ends_in_intron	1479074	1479074	+	asmbl_16078	none	STRG.19090.1,blat.proc3825172.chain_3742	2	STRG.19090.2	1
scaffold_17	alt_acceptor	14370907	14370908	+	asmbl_19397	none	STRG.20913.1,Trinity_GG_28795_c0_g1_i2,blat.proc3825174.chain_1799	3	STRG.20913.2	1
scaffold_3	retained_exon	2668199	2668225	+	asmbl_39916,asmbl_39917	none	STRG.3041.1,blat.proc3825164.chain_3262,blat.proc3825164.chain_3263	3	STRG.3041.2,STRG.3041.3,STRG.3041.4,blat.proc3825164.chain_3260,blat.proc3825164.chain_3264	5
scaffold_4	alt_acceptor	5883121	5883122	-	asmbl_42643,asmbl_42645	none	STRG.4480.2,blat.proc3825150.chain_728,blat.proc3825150.chain_730	3	STRG.4480.1,blat.proc3825150.chain_729	2
scaffold_8	alt_acceptor	3489246	3489247	+	asmbl_52770	none	STRG.9846.2	1	STRG.9846.1,blat.proc3825168.chain_2395,blat.proc3825168.chain_2396	3
scaffold_5	alt_donor	911763	911764	-	asmbl_43788	none	blat.proc3825150.chain_1773	1	STRG.5635.1	1
scaffold_9	spliced_intron	16664696	16665148	-	asmbl_55608	none	STRG.11805.1,blat.proc3825154.chain_186	2	blat.proc3825154.chain_187	1
scaffold_18	retained_intron	13150203	13150282	-	asmbl_20167	none	STRG.21756.2	1	STRG.21756.3	1
scaffold_17	alternate_exon	10049359	10050034	+	asmbl_19165	none	blat.proc3825174.chain_1500	1	STRG.20618.1,STRG.20618.2,blat.proc3825174.chain_1496,blat.proc3825174.chain_1497	4
scaffold_3	ends_in_intron	11897960	11897960	-	asmbl_39196	none	STRG.3617.1,Trinity_GG_1975_c0_g1_i2,blat.proc3825148.chain_3494	3	Trinity_GG_1975_c0_g1_i1,blat.proc3825148.chain_3493	2
scaffold_15	retained_intron	10766606	10766774	+	asmbl_15467	none	blat.proc3825172.chain_3214	1	STRG.18562.4,blat.proc3825172.chain_3210,blat.proc3825172.chain_3211,blat.proc3825172.chain_3212,blat.proc3825172.chain_3213,blat.proc3825172.chain_3216	6
scaffold_18	starts_in_intron	1612032	1612032	+	asmbl_20370	none	blat.proc3825174.chain_1977	1	STRG.21051.1,blat.proc3825174.chain_1980	2
scaffold_22	spliced_intron	6945536	6945630	-	asmbl_29348	none	STRG.25012.1,blat.proc3825160.chain_2177	2	blat.proc3825160.chain_2178	1
scaffold_1	starts_in_intron	6282208	6282208	-	asmbl_336	none	blat.proc3825148.chain_415	1	STRG.423.1,STRG.423.2,STRG.423.3,blat.proc3825148.chain_410,blat.proc3825148.chain_411,blat.proc3825148.chain_412,blat.proc3825148.chain_414,blat.proc3825148.chain_418	8
scaffold_2	retained_intron	20441919	20442053	+	asmbl_25331	none	Trinity_GG_18916_c0_g1_i2,blat.proc3825164.chain_3087	2	STRG.2885.1,STRG.2885.2,Trinity_GG_18916_c0_g1_i1,blat.proc3825164.chain_3086	4
scaffold_22	retained_intron	10089893	10089999	+	asmbl_30346	none	STRG.25360.1,Trinity_GG_31305_c0_g1_i1,blat.proc3825176.chain_2369	3	STRG.25360.2,Trinity_GG_31305_c0_g1_i2,blat.proc3825176.chain_2370	3
scaffold_14	skipped_exon	8007446	8007816	+	asmbl_12186	none	STRG.17217.2	1	STRG.17217.3	1
scaffold_20	alt_donor	10520898	10520899	-	asmbl_26106	none	STRG.23593.1,blat.proc3825160.chain_651	2	STRG.23593.2,blat.proc3825160.chain_652	2
scaffold_7	retained_intron	13546792	13546895	+	asmbl_50362	none	blat.proc3825168.chain_1996	1	STRG.9464.1,blat.proc3825168.chain_1994,blat.proc3825168.chain_1995	3
scaffold_13	starts_in_intron	7114140	7114140	+	asmbl_11016	none	STRG.16011.2,Trinity_GG_26106_c0_g1_i1,blat.proc3825172.chain_763	3	STRG.16011.1,blat.proc3825172.chain_762	2
scaffold_15	starts_in_intron	2825004	2825004	-	asmbl_14052	none	blat.proc3825156.chain_2924	1	STRG.18075.1,STRG.18075.2	2
scaffold_14	retained_intron	8452011	8452120	-	asmbl_13315	none	Trinity_GG_9713_c0_g1_i3	1	Trinity_GG_9713_c0_g1_i2	1
scaffold_7	alt_acceptor	7684366	7684367	-	asmbl_50968	none	STRG.9022.1,blat.proc3825152.chain_1438	2	STRG.9022.2,blat.proc3825152.chain_1437	2
scaffold_28	starts_in_intron	2465159	2465159	+	asmbl_37373	none	blat.proc3825178.chain_2604	1	STRG.29424.1,STRG.29424.2,blat.proc3825178.chain_2603	3
scaffold_3	retained_exon	8997704	8997790	-	asmbl_39046,asmbl_39052	none	STRG.3431.2,blat.proc3825148.chain_3317,blat.proc3825148.chain_3320	3	STRG.3431.1,blat.proc3825148.chain_3319	2
scaffold_20	alternate_exon	11776068	11776583	-	asmbl_26196	none	STRG.23689.1,Trinity_GG_13189_c0_g1_i2,blat.proc3825160.chain_769	3	STRG.23689.2,Trinity_GG_13189_c0_g1_i3,blat.proc3825160.chain_767	3
scaffold_13	alternate_exon	7105938	7107882	+	asmbl_11010,asmbl_11013	none	STRG.16010.1,STRG.16010.2,Trinity_GG_26113_c0_g1_i12,blat.proc3825172.chain_778	4	STRG.16010.3,Trinity_GG_26113_c0_g1_i10,blat.proc3825172.chain_781	3
scaffold_18	starts_in_intron	142121	142121	+	asmbl_20259	none	blat.proc3825174.chain_1869	1	STRG.20965.1	1
scaffold_1	alt_donor	5989917	5989918	+	asmbl_1813	none	STRG.394.2	1	STRG.394.1,blat.proc3825164.chain_547	2
scaffold_9	spliced_intron	12476191	12476332	+	asmbl_54439,asmbl_54440	none	blat.proc3825170.chain_384,blat.proc3825170.chain_386	2	STRG.11565.2,blat.proc3825170.chain_385	2
scaffold_25	spliced_intron	7903393	7903604	+	asmbl_33690	none	STRG.27614.2,blat.proc3825178.chain_711	2	STRG.27614.1,Trinity_GG_32536_c0_g1_i1,blat.proc3825178.chain_710	3
scaffold_5	starts_in_intron	4689995	4689995	-	asmbl_43986	none	blat.proc3825150.chain_2077	1	blat.proc3825150.chain_2075,blat.proc3825150.chain_2079,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084	4
scaffold_13	alt_acceptor	3923284	3923285	-	asmbl_9593	none	STRG.15720.3	1	STRG.15720.1,STRG.15720.2,blat.proc3825156.chain_577,blat.proc3825156.chain_578	4
scaffold_37	alt_acceptor	3864	3865	+	asmbl_41054	none	STRG.30030.1,blat.proc3825178.chain_3165	2	STRG.30030.2,blat.proc3825178.chain_3164	2
scaffold_12	alt_acceptor	12306108	12306109	+	asmbl_7987	none	STRG.15133.1	1	STRG.15133.2	1
scaffold_6	spliced_intron	13224669	13224802	+	asmbl_47498,asmbl_47508,asmbl_47509	none	STRG.8084.3,blat.proc3825168.chain_572,blat.proc3825168.chain_573	3	Trinity_GG_21752_c0_g2_i1,blat.proc3825168.chain_579	2
scaffold_26	starts_in_intron	3790693	3790693	+	asmbl_34838	none	STRG.28068.3	1	blat.proc3825178.chain_1145,blat.proc3825178.chain_1150,blat.proc3825178.chain_1153	3
scaffold_15	alt_acceptor	8165664	8165665	+	asmbl_15322	none	STRG.18391.2	1	STRG.18391.1,blat.proc3825172.chain_3002	2
scaffold_12	spliced_intron	14173452	14173745	+	asmbl_8067	none	blat.proc3825172.chain_4	1	STRG.15252.1,STRG.15252.2,Trinity_GG_25713_c0_g1_i9,blat.proc3825172.chain_3,blat.proc3825172.chain_5,blat.proc3825172.chain_6	6
scaffold_10	starts_in_intron	6411581	6411581	-	asmbl_4452	none	blat.proc3825154.chain_1023	1	STRG.12469.1,blat.proc3825154.chain_1022,blat.proc3825154.chain_1025	3
scaffold_5	starts_in_intron	14204168	14204168	-	asmbl_44592	none	blat.proc3825150.chain_2775	1	STRG.6632.1,STRG.6632.2	2
scaffold_21	alt_donor	8137262	8137263	-	asmbl_27894,asmbl_27895	none	blat.proc3825160.chain_1511,blat.proc3825160.chain_1512	2	blat.proc3825160.chain_1509	1
scaffold_5	starts_in_intron	1062175	1062175	-	asmbl_43814	none	blat.proc3825150.chain_1901	1	STRG.5657.1,STRG.5657.2,Trinity_GG_3203_c0_g1_i2,Trinity_GG_3203_c0_g1_i4,blat.proc3825150.chain_1899,blat.proc3825150.chain_1900	6
scaffold_24	spliced_intron	445903	446548	+	asmbl_32016,asmbl_32017	none	STRG.26337.1,Trinity_GG_31878_c0_g1_i2,blat.proc3825176.chain_3325,blat.proc3825176.chain_3326	4	STRG.26337.2	1
scaffold_9	ends_in_intron	17852502	17852502	+	asmbl_54654,asmbl_54655,asmbl_54656	none	Trinity_GG_23881_c0_g1_i5,Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_570,blat.proc3825170.chain_572,blat.proc3825170.chain_573	5	STRG.11873.3	1
scaffold_1	retained_intron	20341716	20341796	+	asmbl_2615	none	blat.proc3825164.chain_1589	1	STRG.1396.4	1
scaffold_27	retained_intron	4526378	4526769	+	asmbl_36308	none	blat.proc3825178.chain_2159	1	STRG.28906.1,STRG.28906.2	2
scaffold_5	alt_donor	16018234	16018235	-	asmbl_44738	none	STRG.6788.2,Trinity_GG_3751_c0_g1_i4,blat.proc3825150.chain_2868	3	blat.proc3825150.chain_2865	1
scaffold_18	alt_acceptor	1648374	1648375	-	asmbl_19632	none	STRG.21046.1	1	STRG.21046.2,blat.proc3825158.chain_1912,blat.proc3825158.chain_1913	3
scaffold_15	retained_exon	7182916	7182948	-	asmbl_14275	none	STRG.18310.2,blat.proc3825156.chain_3043	2	STRG.18310.1,STRG.18310.4,blat.proc3825156.chain_3040,blat.proc3825156.chain_3041	4
scaffold_4	alternate_exon	16804880	16804946	-	asmbl_43214,asmbl_43216	none	STRG.5268.1,Trinity_GG_2936_c0_g1_i1,blat.proc3825150.chain_1428,blat.proc3825150.chain_1429	4	STRG.5268.2,blat.proc3825150.chain_1430	2
scaffold_18	alt_acceptor	7553491	7553492	-	asmbl_19957,asmbl_19958	none	STRG.21458.2,STRG.21458.3	2	STRG.21458.1,blat.proc3825158.chain_2374	2
scaffold_21	alternate_exon	5774666	5775179	-	asmbl_27696	none	blat.proc3825160.chain_1201	1	STRG.24114.3	1
scaffold_14	starts_in_intron	11076853	11076853	-	asmbl_13446	none	STRG.17446.1	1	STRG.17446.2,STRG.17446.3,blat.proc3825156.chain_2240	3
scaffold_20	retained_exon	11948578	11948624	-	asmbl_26208	none	blat.proc3825160.chain_681	1	blat.proc3825160.chain_679,blat.proc3825160.chain_682	2
scaffold_8	retained_intron	11851123	11851344	+	asmbl_53290,asmbl_53291	none	blat.proc3825168.chain_3015,blat.proc3825168.chain_3024	2	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3016,blat.proc3825168.chain_3018,blat.proc3825168.chain_3019,blat.proc3825168.chain_3020,blat.proc3825168.chain_3021,blat.proc3825168.chain_3022,blat.proc3825168.chain_3023,blat.proc3825168.chain_3025,blat.proc3825168.chain_3027	13
scaffold_2	alt_acceptor	13995196	13995197	+	asmbl_24864	none	STRG.2397.3	1	STRG.2397.1,STRG.2397.2	2
scaffold_1	retained_intron	2782343	2782775	-	asmbl_132,asmbl_133	none	STRG.178.1,Trinity_GG_99_c0_g1_i1,blat.proc3825148.chain_167,blat.proc3825148.chain_168	4	STRG.178.2,blat.proc3825148.chain_169	2
scaffold_9	starts_in_intron	17850308	17850308	+	asmbl_54654,asmbl_54655,asmbl_54656	none	blat.proc3825170.chain_577	1	STRG.11873.1,STRG.11873.2	2
scaffold_17	starts_in_intron	7849365	7849365	+	asmbl_18925	none	STRG.20411.3	1	STRG.20411.1	1
scaffold_3	starts_in_intron	19811537	19811537	+	asmbl_40779,asmbl_40780	none	blat.proc3825166.chain_565,blat.proc3825166.chain_570	2	STRG.4097.1,STRG.4097.2,STRG.4097.3,STRG.4097.4,blat.proc3825166.chain_566,blat.proc3825166.chain_567,blat.proc3825166.chain_568,blat.proc3825166.chain_569	8
scaffold_11	skipped_exon	8896554	8898836	-	asmbl_6884	none	STRG.13911.1	1	STRG.13911.2	1
scaffold_24	alt_acceptor	7100128	7100129	+	asmbl_32367	none	STRG.26761.2	1	STRG.26761.1	1
scaffold_10	ends_in_intron	7107328	7107328	+	asmbl_3259	none	Trinity_GG_24207_c0_g1_i2,blat.proc3825170.chain_1118	2	STRG.12528.1,Trinity_GG_24207_c0_g1_i1,blat.proc3825170.chain_1117	3
scaffold_3	starts_in_intron	10308470	10308470	-	asmbl_39074	none	STRG.3477.2,blat.proc3825148.chain_3312	2	STRG.3477.1,blat.proc3825148.chain_3313	2
scaffold_6	ends_in_intron	13985950	13985950	-	asmbl_48972	none	Trinity_GG_4653_c3_g1_i1,blat.proc3825152.chain_621	2	STRG.8159.1,blat.proc3825152.chain_614,blat.proc3825152.chain_615	3
scaffold_15	retained_exon	6957134	6957218	-	asmbl_14271,asmbl_14273	none	STRG.18300.1,blat.proc3825156.chain_3145,blat.proc3825156.chain_3146	3	STRG.18300.2,blat.proc3825156.chain_3147	2
scaffold_2	alt_donor	4578060	4578061	+	asmbl_24359,asmbl_24360,asmbl_24365	none	STRG.1886.2,Trinity_GG_18341_c1_g1_i4,blat.proc3825164.chain_1977,blat.proc3825164.chain_1979,blat.proc3825164.chain_1980	5	STRG.1886.3	1
scaffold_20	alt_acceptor	1624100	1624101	-	asmbl_25595	none	STRG.22899.3	1	STRG.22899.1,STRG.22899.2	2
scaffold_2	retained_intron	14220662	14220786	-	asmbl_23582,asmbl_23585	none	blat.proc3825148.chain_2355,blat.proc3825148.chain_2356	2	STRG.2418.2,blat.proc3825148.chain_2354,blat.proc3825148.chain_2357,blat.proc3825148.chain_2358	4
scaffold_21	alternate_exon	27998	28225	-	asmbl_27263	none	STRG.23712.2,Trinity_GG_13205_c0_g1_i2,blat.proc3825160.chain_815	3	STRG.23712.1,Trinity_GG_13205_c0_g1_i1,blat.proc3825160.chain_816	3
scaffold_23	alt_acceptor	5584100	5584101	+	asmbl_31589	none	STRG.25931.2	1	STRG.25931.1,STRG.25931.3,STRG.25931.4,Trinity_GG_31582_c0_g1_i1,blat.proc3825176.chain_2800,blat.proc3825176.chain_2802	6
scaffold_14	retained_intron	6880513	6880765	+	asmbl_12108	none	blat.proc3825172.chain_1898	1	STRG.17128.1,blat.proc3825172.chain_1897	2
scaffold_11	starts_in_intron	16479296	16479296	-	asmbl_7225	none	Trinity_GG_8016_c0_g1_i4	1	STRG.14339.2,STRG.14339.3	2
scaffold_1	retained_exon	20135266	20135277	-	asmbl_1175	none	blat.proc3825148.chain_1398	1	STRG.1386.2	1
scaffold_12	spliced_intron	9505734	9505871	+	asmbl_7863	none	STRG.14930.1,Trinity_GG_25533_c0_g1_i3,blat.proc3825170.chain_3428	3	STRG.14930.2,Trinity_GG_25533_c0_g1_i1,Trinity_GG_25533_c0_g1_i2,blat.proc3825170.chain_3429,blat.proc3825170.chain_3430	5
scaffold_11	alt_donor	1156579	1156580	+	asmbl_5324	none	STRG.13311.1,Trinity_GG_24584_c0_g1_i2,blat.proc3825170.chain_1776	3	Trinity_GG_24584_c0_g1_i1,Trinity_GG_24584_c0_g1_i5,blat.proc3825170.chain_1777,blat.proc3825170.chain_1778	4
scaffold_5	retained_intron	18265468	18265781	+	asmbl_46234,asmbl_46236,asmbl_46238,asmbl_46244	none	STRG.6968.2,STRG.6968.5,blat.proc3825166.chain_3184,blat.proc3825166.chain_3186,blat.proc3825166.chain_3188	5	STRG.6968.1,blat.proc3825166.chain_3185,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	4
scaffold_7	spliced_intron	15270953	15271287	+	asmbl_50425,asmbl_50427,asmbl_50429	none	STRG.9546.4,blat.proc3825168.chain_2120,blat.proc3825168.chain_2123	3	blat.proc3825168.chain_2121,blat.proc3825168.chain_2126	2
scaffold_6	ends_in_intron	4960344	4960344	-	asmbl_48374	none	blat.proc3825150.chain_3662	1	blat.proc3825150.chain_3661	1
scaffold_5	starts_in_intron	4868726	4868726	+	asmbl_45312	none	blat.proc3825166.chain_2175	1	STRG.5947.1,blat.proc3825166.chain_2176	2
scaffold_8	spliced_intron	6027967	6028061	+	asmbl_52924,asmbl_52926,asmbl_52927,asmbl_52929,asmbl_52930	none	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2613,blat.proc3825168.chain_2614	5	blat.proc3825168.chain_2610	1
scaffold_13	alt_donor	10237048	10237049	-	asmbl_10056	none	STRG.16258.4	1	STRG.16258.1,STRG.16258.3,blat.proc3825156.chain_1115,blat.proc3825156.chain_1116	4
scaffold_3	alt_donor	7711248	7711249	-	asmbl_38976,asmbl_38977,asmbl_38979,asmbl_38980,asmbl_38982,asmbl_38983,asmbl_38984	none	STRG.3368.1,blat.proc3825148.chain_3197,blat.proc3825148.chain_3199,blat.proc3825148.chain_3200,blat.proc3825148.chain_3202,blat.proc3825148.chain_3203,blat.proc3825148.chain_3204	7	blat.proc3825148.chain_3198,blat.proc3825148.chain_3201	2
scaffold_15	starts_in_intron	5319728	5319728	-	asmbl_14197	none	blat.proc3825156.chain_3081	1	STRG.18225.1,STRG.18225.2,Trinity_GG_10261_c0_g1_i2,blat.proc3825156.chain_3082,blat.proc3825156.chain_3083,blat.proc3825156.chain_3084,blat.proc3825156.chain_3085	7
scaffold_10	retained_exon	4159534	4159648	-	asmbl_4269,asmbl_4271	none	STRG.12253.2,STRG.12253.3,blat.proc3825154.chain_811	3	STRG.12253.1,blat.proc3825154.chain_809	2
scaffold_6	retained_intron	3564649	3564671	-	asmbl_48270	none	STRG.7366.1,Trinity_GG_4125_c0_g1_i1	2	STRG.7366.2	1
scaffold_13	alternate_exon	1335356	1335496	+	asmbl_10563	none	STRG.15506.1,blat.proc3825172.chain_279	2	STRG.15506.2,Trinity_GG_25848_c0_g1_i1,blat.proc3825172.chain_277	3
scaffold_23	retained_intron	222857	223034	+	asmbl_31288	none	STRG.25539.1,blat.proc3825176.chain_2536	2	STRG.25539.2,blat.proc3825176.chain_2535	2
scaffold_5	alt_donor	6664463	6664464	-	asmbl_44127,asmbl_44128	none	STRG.6073.2,STRG.6073.3	2	STRG.6073.1	1
scaffold_5	spliced_intron	8413453	8414764	+	asmbl_45550,asmbl_45551	none	STRG.6187.2,blat.proc3825166.chain_2307	2	STRG.6187.1,blat.proc3825166.chain_2304,blat.proc3825166.chain_2305	3
scaffold_2	alt_acceptor	17159790	17159791	+	asmbl_25161	none	STRG.2617.1	1	STRG.2617.2,blat.proc3825164.chain_2919	2
scaffold_18	starts_in_intron	647025	647025	+	asmbl_20318	none	Trinity_GG_28827_c0_g1_i3,blat.proc3825174.chain_1857	2	STRG.21005.1,STRG.21005.2,Trinity_GG_28827_c0_g1_i2,Trinity_GG_28827_c0_g1_i5,Trinity_GG_28827_c0_g1_i6,blat.proc3825174.chain_1855,blat.proc3825174.chain_1856,blat.proc3825174.chain_1858	8
scaffold_7	retained_intron	12277542	12278368	+	asmbl_50239	none	Trinity_GG_22453_c1_g1_i1,blat.proc3825168.chain_1768	2	STRG.9323.1,blat.proc3825168.chain_1766,blat.proc3825168.chain_1767	3
scaffold_18	retained_exon	9259388	9259473	-	asmbl_20059	none	STRG.21569.1,Trinity_GG_12060_c0_g1_i1,blat.proc3825158.chain_2488	3	STRG.21569.4,Trinity_GG_12060_c0_g1_i3,blat.proc3825158.chain_2486	3
scaffold_19	alt_donor	1038554	1038555	+	asmbl_21229	none	STRG.21896.2,blat.proc3825174.chain_2870	2	STRG.21896.1,blat.proc3825174.chain_2871	2
scaffold_2	alternate_exon	13445148	13445746	-	asmbl_23519	none	blat.proc3825148.chain_2364	1	blat.proc3825148.chain_2362	1
scaffold_10	alt_donor	10831401	10831402	-	asmbl_4763	none	STRG.12770.2	1	STRG.12770.1,blat.proc3825154.chain_1399	2
scaffold_4	alternate_exon	7025505	7025774	+	asmbl_41443	none	STRG.4537.1,blat.proc3825166.chain_996	2	STRG.4537.2,blat.proc3825166.chain_995,blat.proc3825166.chain_997	3
scaffold_10	ends_in_intron	15510813	15510813	+	asmbl_3693	none	blat.proc3825170.chain_1680	1	STRG.13072.1,blat.proc3825170.chain_1679	2
scaffold_10	retained_intron	12726885	12726904	+	asmbl_3540	none	STRG.12856.1	1	STRG.12856.2	1
scaffold_12	alt_acceptor	16398697	16398698	+	asmbl_8169,asmbl_8170,asmbl_8171,asmbl_8172,asmbl_8173,asmbl_8174	none	STRG.15402.2,STRG.15402.3,STRG.15402.4,STRG.15402.5,STRG.15402.6,Trinity_GG_25733_c0_g1_i13,Trinity_GG_25733_c0_g1_i3,Trinity_GG_25733_c0_g1_i9,blat.proc3825172.chain_42,blat.proc3825172.chain_44,blat.proc3825172.chain_48	11	STRG.15402.1,Trinity_GG_25733_c0_g1_i11,blat.proc3825172.chain_47	3
scaffold_11	retained_intron	7091036	7091125	+	asmbl_5658	none	blat.proc3825170.chain_2276	1	STRG.13738.1,blat.proc3825170.chain_2275	2
scaffold_12	spliced_intron	4549036	4549126	-	asmbl_8399	none	STRG.14628.1,blat.proc3825154.chain_3091	2	STRG.14628.2	1
scaffold_2	starts_in_intron	15868574	15868574	+	asmbl_25080	none	Trinity_GG_18755_c1_g1_i2,blat.proc3825164.chain_2831	2	STRG.2535.1,blat.proc3825164.chain_2830	2
scaffold_3	spliced_intron	12445250	12446860	+	asmbl_40404	none	blat.proc3825166.chain_155	1	STRG.3639.1,Trinity_GG_19365_c0_g1_i1,blat.proc3825166.chain_156	3
scaffold_6	starts_in_intron	13655185	13655185	-	asmbl_48929	none	STRG.8106.2	1	STRG.8106.1,STRG.8106.3,blat.proc3825152.chain_524,blat.proc3825152.chain_525,blat.proc3825152.chain_526,blat.proc3825152.chain_527	6
scaffold_5	spliced_intron	18404543	18404691	+	asmbl_46260	none	STRG.6977.1,blat.proc3825166.chain_3128	2	blat.proc3825166.chain_3126	1
scaffold_3	starts_in_intron	16006129	16006129	-	asmbl_39468	none	Trinity_GG_2092_c0_g1_i1,blat.proc3825148.chain_3715	2	STRG.3875.1,blat.proc3825148.chain_3716,blat.proc3825148.chain_3717	3
scaffold_13	skipped_exon	4457825	4458799	+	asmbl_10797	none	STRG.15770.3,blat.proc3825172.chain_511	2	STRG.15770.1,blat.proc3825172.chain_509	2
scaffold_9	alt_acceptor	18389554	18389555	+	asmbl_54663,asmbl_54664	none	STRG.11879.1,STRG.11879.3	2	STRG.11879.2,blat.proc3825170.chain_645	2
scaffold_12	retained_intron	15425487	15425594	-	asmbl_9080	none	blat.proc3825156.chain_195	1	STRG.15346.1,STRG.15346.2,blat.proc3825156.chain_194,blat.proc3825156.chain_196	4
scaffold_6	starts_in_intron	18018442	18018442	+	asmbl_47801	none	blat.proc3825168.chain_941	1	STRG.8489.1	1
scaffold_12	alt_donor	7600422	7600423	+	asmbl_7770	none	STRG.14837.2	1	STRG.14837.1,blat.proc3825170.chain_3350	2
scaffold_2	alternate_exon	889899	890963	+	asmbl_24129,asmbl_24130	none	blat.proc3825164.chain_1712,blat.proc3825164.chain_1714	2	STRG.1565.1,STRG.1565.3,STRG.1565.4,STRG.1565.5,blat.proc3825164.chain_1715	5
scaffold_2	retained_intron	44017	44055	-	asmbl_22786	none	STRG.1502.1	1	STRG.1502.2	1
scaffold_28	alternate_exon	5636362	5636800	-	asmbl_38306,asmbl_38310,asmbl_38311	none	STRG.29706.2,STRG.29706.3,STRG.29706.4,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854	5	STRG.29706.1,blat.proc3825162.chain_2855,blat.proc3825162.chain_2856,blat.proc3825162.chain_2858,blat.proc3825162.chain_2859	5
scaffold_13	spliced_intron	7085089	7085351	-	asmbl_9847	none	STRG.16012.1,blat.proc3825156.chain_983	2	blat.proc3825156.chain_979	1
scaffold_4	ends_in_intron	17113535	17113535	+	asmbl_42035	none	blat.proc3825166.chain_1669	1	STRG.5308.1,STRG.5308.3,STRG.5308.4,Trinity_GG_20255_c0_g1_i1,blat.proc3825166.chain_1665,blat.proc3825166.chain_1666	6
scaffold_27	retained_intron	6258368	6258607	+	asmbl_36393	none	STRG.29016.1,blat.proc3825178.chain_2190	2	STRG.29016.2,blat.proc3825178.chain_2194	2
scaffold_5	starts_in_intron	13313354	13313354	-	asmbl_44538	none	blat.proc3825150.chain_2762	1	STRG.6579.1,blat.proc3825150.chain_2763,blat.proc3825150.chain_2764,blat.proc3825150.chain_2765,blat.proc3825150.chain_2766	5
scaffold_23	starts_in_intron	10332176	10332176	+	asmbl_31852	none	blat.proc3825176.chain_3233	1	STRG.26245.4	1
scaffold_11	spliced_intron	15655831	15655930	-	asmbl_7199,asmbl_7200,asmbl_7202,asmbl_7203,asmbl_7204,asmbl_7205	none	STRG.14308.1,STRG.14308.2,blat.proc3825154.chain_2859,blat.proc3825154.chain_2860,blat.proc3825154.chain_2861,blat.proc3825154.chain_2865,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867	8	blat.proc3825154.chain_2863,blat.proc3825154.chain_2868	2
scaffold_12	alt_donor	2661709	2661710	+	asmbl_7504,asmbl_7505	none	STRG.14507.1,STRG.14507.3,blat.proc3825170.chain_3085,blat.proc3825170.chain_3088	4	blat.proc3825170.chain_3089	1
scaffold_17	starts_in_intron	7062833	7062833	-	asmbl_18033	none	Trinity_GG_11463_c0_g1_i1	1	blat.proc3825158.chain_1427	1
scaffold_7	spliced_intron	12058955	12059038	+	asmbl_50210,asmbl_50212	none	STRG.9307.1,Trinity_GG_22476_c0_g1_i2,blat.proc3825168.chain_1823,blat.proc3825168.chain_1827	4	Trinity_GG_22476_c0_g1_i8,blat.proc3825168.chain_1824	2
scaffold_4	retained_intron	15679041	15679145	-	asmbl_43112	none	STRG.5151.2,blat.proc3825150.chain_1297	2	STRG.5151.1,blat.proc3825150.chain_1295,blat.proc3825150.chain_1296,blat.proc3825150.chain_1298	4
scaffold_10	ends_in_intron	3396273	3396273	-	asmbl_4204	none	blat.proc3825154.chain_731	1	STRG.12170.1,Trinity_GG_6789_c0_g1_i1,Trinity_GG_6789_c0_g1_i3,blat.proc3825154.chain_729,blat.proc3825154.chain_730	5
scaffold_24	starts_in_intron	444562	444562	+	asmbl_32017,asmbl_32021	none	STRG.26337.2,Trinity_GG_31878_c0_g1_i2,blat.proc3825176.chain_3325	3	STRG.26337.1,blat.proc3825176.chain_3326,blat.proc3825176.chain_3328	3
scaffold_11	spliced_intron	8105125	8105409	+	asmbl_5728,asmbl_5729,asmbl_5732,asmbl_5733,asmbl_5734,asmbl_5735	none	STRG.13823.1,STRG.13823.2,STRG.13823.3,STRG.13823.4,blat.proc3825170.chain_2348,blat.proc3825170.chain_2350,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	8	blat.proc3825170.chain_2349	1
scaffold_8	alt_acceptor	1801739	1801740	-	asmbl_51705	none	STRG.9780.2	1	STRG.9780.1	1
scaffold_8	spliced_intron	11849733	11850089	+	asmbl_53282	none	blat.proc3825168.chain_3016	1	STRG.10390.2,STRG.10390.4,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	4
scaffold_20	starts_in_intron	8578195	8578195	-	asmbl_25999	none	blat.proc3825160.chain_398	1	STRG.23410.1,blat.proc3825160.chain_396,blat.proc3825160.chain_397	3
scaffold_3	ends_in_intron	16339041	16339041	-	asmbl_39495	none	blat.proc3825150.chain_105	1	STRG.3907.1,STRG.3907.2	2
scaffold_12	starts_in_intron	6471187	6471187	-	asmbl_8538	none	blat.proc3825154.chain_3243	1	STRG.14744.1,blat.proc3825154.chain_3244	2
scaffold_5	retained_intron	10534403	10534505	-	asmbl_44361	none	blat.proc3825150.chain_2540	1	STRG.6342.2,blat.proc3825150.chain_2542	2
scaffold_4	starts_in_intron	104481	104481	-	asmbl_42300	none	blat.proc3825150.chain_327	1	STRG.4114.1,blat.proc3825150.chain_328	2
scaffold_9	retained_intron	16562642	16563669	-	asmbl_55580	none	STRG.11806.6	1	STRG.11806.2,STRG.11806.3,STRG.11806.4,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7
scaffold_70	alternate_exon	7846	7907	-	asmbl_51597	none	STRG.30108.2	1	blat.proc3825162.chain_3271,blat.proc3825162.chain_3272	2
scaffold_25	alt_acceptor	4439954	4439955	+	asmbl_33495,asmbl_33496,asmbl_33500	none	STRG.27374.1,STRG.27374.2,STRG.27374.3,Trinity_GG_32407_c0_g1_i1,Trinity_GG_32407_c0_g1_i2,blat.proc3825178.chain_481,blat.proc3825178.chain_482	7	STRG.27374.4	1
scaffold_23	alternate_exon	5617855	5617919	-	asmbl_30929	none	STRG.25937.1	1	STRG.25937.2,STRG.25937.3,STRG.25937.4,Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057,blat.proc3825160.chain_3058,blat.proc3825160.chain_3059	7
scaffold_3	spliced_intron	17845439	17845779	+	asmbl_40705	none	STRG.4004.1,blat.proc3825166.chain_497	2	STRG.4004.4,blat.proc3825166.chain_496	2
scaffold_13	retained_intron	2507577	2507742	+	asmbl_10622	none	Trinity_GG_25851_c0_g1_i1,blat.proc3825172.chain_287	2	STRG.15559.1,STRG.15559.2,STRG.15559.3,Trinity_GG_25851_c0_g1_i2,Trinity_GG_25851_c0_g1_i4,Trinity_GG_25851_c0_g1_i5,blat.proc3825172.chain_284,blat.proc3825172.chain_285,blat.proc3825172.chain_286	9
scaffold_17	ends_in_intron	652698	652698	-	asmbl_17640	none	blat.proc3825158.chain_965	1	STRG.19915.1,Trinity_GG_11177_c0_g1_i1,Trinity_GG_11177_c0_g1_i2,blat.proc3825158.chain_964,blat.proc3825158.chain_966	5
scaffold_28	starts_in_intron	2945179	2945179	-	asmbl_38117	none	blat.proc3825162.chain_2670	1	STRG.29499.1,blat.proc3825162.chain_2671	2
scaffold_17	alt_acceptor	748757	748758	+	asmbl_18567	none	STRG.19925.2	1	STRG.19925.1	1
scaffold_26	retained_intron	3623024	3623045	+	asmbl_34803	none	Trinity_GG_32782_c1_g1_i1	1	STRG.28042.3	1
scaffold_22	alt_acceptor	1013399	1013400	-	asmbl_29141	none	STRG.24755.2,blat.proc3825160.chain_1946	2	STRG.24755.1,blat.proc3825160.chain_1945	2
scaffold_8	alt_donor	17628758	17628759	-	asmbl_52474	none	STRG.10679.1,blat.proc3825152.chain_2947	2	STRG.10679.2	1
scaffold_15	alt_donor	15569502	15569503	+	asmbl_15806	none	STRG.18949.2,blat.proc3825172.chain_3592	2	STRG.18949.1,Trinity_GG_27695_c0_g1_i1,blat.proc3825172.chain_3593	3
scaffold_5	alt_acceptor	18222899	18222900	+	asmbl_46220,asmbl_46222	none	STRG.6959.3,STRG.6959.5	2	STRG.6959.1,STRG.6959.2,STRG.6959.4,blat.proc3825166.chain_3166,blat.proc3825166.chain_3167	5
scaffold_11	alt_donor	10396942	10396943	+	asmbl_5939,asmbl_5941,asmbl_5942	none	STRG.14049.1,blat.proc3825170.chain_2497,blat.proc3825170.chain_2498,blat.proc3825170.chain_2499	4	STRG.14049.2,blat.proc3825170.chain_2496	2
scaffold_5	alt_acceptor	8368089	8368090	+	asmbl_45538	none	STRG.6177.1,Trinity_GG_20682_c0_g1_i1,blat.proc3825166.chain_2386,blat.proc3825166.chain_2387	4	STRG.6177.2	1
scaffold_4	alt_donor	4413750	4413751	+	asmbl_41254	none	STRG.4349.3,blat.proc3825166.chain_843	2	STRG.4349.2,Trinity_GG_19749_c0_g1_i11,Trinity_GG_19749_c0_g1_i14,blat.proc3825166.chain_840,blat.proc3825166.chain_846,blat.proc3825166.chain_849	6
scaffold_8	retained_exon	11581936	11581992	+	asmbl_53240	none	STRG.10363.2,blat.proc3825168.chain_2852	2	STRG.10363.1,blat.proc3825168.chain_2851	2
scaffold_4	alternate_exon	19579209	19579646	-	asmbl_43457	none	STRG.5543.3	1	STRG.5543.4	1
scaffold_22	retained_exon	9721617	9721808	+	asmbl_30315	none	STRG.25308.4	1	STRG.25308.2	1
scaffold_19	retained_intron	3684557	3684940	+	asmbl_21335	none	blat.proc3825174.chain_3084	1	STRG.22058.1,blat.proc3825174.chain_3085	2
scaffold_15	skipped_exon	15906565	15906998	-	asmbl_14807,asmbl_14810,asmbl_14811	none	STRG.18975.1,blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_64	4	blat.proc3825158.chain_66	1
scaffold_6	spliced_intron	13877179	13877346	-	asmbl_48948	none	STRG.8137.3,blat.proc3825152.chain_545	2	STRG.8137.1	1
scaffold_13	starts_in_intron	3811077	3811077	-	asmbl_9584	none	blat.proc3825156.chain_542	1	STRG.15712.1,blat.proc3825156.chain_543,blat.proc3825156.chain_545,blat.proc3825156.chain_546	4
scaffold_2	starts_in_intron	886090	886090	+	asmbl_24122	none	Trinity_GG_18168_c0_g1_i1,blat.proc3825164.chain_1622	2	STRG.1564.2,STRG.1564.3,blat.proc3825164.chain_1624	3
scaffold_11	ends_in_intron	1983154	1983154	-	asmbl_6465	none	blat.proc3825154.chain_1941	1	STRG.13360.1,STRG.13360.2,blat.proc3825154.chain_1942,blat.proc3825154.chain_1944	4
scaffold_1	retained_intron	12048626	12048713	-	asmbl_679,asmbl_681	none	STRG.817.1,STRG.817.2,blat.proc3825148.chain_752	3	STRG.817.3,blat.proc3825148.chain_753	2
scaffold_26	starts_in_intron	2001915	2001915	+	asmbl_34731	none	blat.proc3825178.chain_1000	1	STRG.27945.1	1
scaffold_14	retained_exon	3797031	3797066	+	asmbl_11965	none	STRG.16953.2	1	STRG.16953.1,blat.proc3825172.chain_1716	2
scaffold_23	starts_in_intron	5620444	5620444	-	asmbl_30928,asmbl_30930	none	STRG.25937.4,blat.proc3825160.chain_3056	2	STRG.25937.2,STRG.25937.3,Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057,blat.proc3825160.chain_3058,blat.proc3825160.chain_3059	6
scaffold_13	alternate_exon	12869132	12869276	-	asmbl_10144	none	STRG.16379.2	1	STRG.16379.1	1
scaffold_10	alt_acceptor	11971544	11971545	+	asmbl_3518	none	STRG.12838.5	1	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.6,Trinity_GG_24389_c1_g1_i1	5
scaffold_21	alt_acceptor	5528440	5528441	+	asmbl_28574	none	STRG.24084.1,blat.proc3825176.chain_1289	2	STRG.24084.2	1
scaffold_6	starts_in_intron	12869209	12869209	+	asmbl_47437	none	Trinity_GG_21711_c0_g1_i2,blat.proc3825168.chain_486	2	STRG.8045.1,Trinity_GG_21711_c0_g1_i3,blat.proc3825168.chain_485,blat.proc3825168.chain_487	4
scaffold_6	alternate_exon	7988100	7988149	-	asmbl_48521	none	STRG.7677.1	1	STRG.7677.2,blat.proc3825152.chain_40	2
scaffold_5	retained_exon	15506385	15507043	-	asmbl_44679,asmbl_44681	none	STRG.6740.2,blat.proc3825150.chain_2928,blat.proc3825150.chain_2929,blat.proc3825150.chain_2931	4	STRG.6740.1,blat.proc3825150.chain_2930,blat.proc3825150.chain_2932	3
scaffold_2	spliced_intron	16404516	16404596	+	asmbl_25137,asmbl_25138	none	STRG.2582.1,blat.proc3825164.chain_2870,blat.proc3825164.chain_2872	3	STRG.2582.2,Trinity_GG_18776_c0_g1_i1,blat.proc3825164.chain_2871	3
scaffold_15	spliced_intron	9817941	9818374	+	asmbl_15417,asmbl_15418	none	STRG.18497.1,STRG.18497.2,blat.proc3825172.chain_3081,blat.proc3825172.chain_3082	4	STRG.18497.3,Trinity_GG_27412_c0_g1_i2,blat.proc3825172.chain_3080,blat.proc3825172.chain_3084	4
scaffold_6	starts_in_intron	12029548	12029548	-	asmbl_48777	none	blat.proc3825152.chain_360	1	STRG.7979.1,Trinity_GG_4527_c0_g1_i3,blat.proc3825152.chain_361,blat.proc3825152.chain_363	4
scaffold_23	retained_exon	2208940	2209059	-	asmbl_30716,asmbl_30717	none	STRG.25698.3,STRG.25698.6	2	STRG.25698.2,STRG.25698.5	2
scaffold_14	ends_in_intron	8502512	8502512	-	asmbl_13324	none	Trinity_GG_9709_c0_g1_i1,blat.proc3825156.chain_2125	2	STRG.17292.2,STRG.17292.3	2
scaffold_13	retained_intron	2272879	2273221	-	asmbl_9438,asmbl_9446	none	STRG.15548.4,blat.proc3825156.chain_396	2	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9
scaffold_2	alt_donor	9297052	9297053	+	asmbl_24681	none	STRG.2173.1,Trinity_GG_18506_c0_g1_i1,blat.proc3825164.chain_2301	3	STRG.2173.2,Trinity_GG_18506_c0_g1_i2,blat.proc3825164.chain_2300	3
scaffold_5	alt_acceptor	9711757	9711758	+	asmbl_45636	none	STRG.6283.1	1	STRG.6283.2,blat.proc3825166.chain_2495	2
scaffold_9	starts_in_intron	8944453	8944453	-	asmbl_55147	none	STRG.11280.1	1	blat.proc3825152.chain_3426,blat.proc3825152.chain_3427,blat.proc3825152.chain_3428	3
scaffold_9	spliced_intron	2400442	2400475	-	asmbl_54868	none	STRG.10884.1	1	blat.proc3825152.chain_3098	1
scaffold_4	ends_in_intron	16874362	16874362	-	asmbl_43231	none	Trinity_GG_2919_c0_g1_i2	1	STRG.5273.1,STRG.5273.2,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	4
scaffold_9	alt_donor	12631095	12631096	+	asmbl_54454	none	STRG.11586.5	1	STRG.11586.3,STRG.11586.4,blat.proc3825170.chain_401,blat.proc3825170.chain_403,blat.proc3825170.chain_405	5
scaffold_3	retained_exon	7926286	7927017	+	asmbl_40185	none	STRG.3380.3	1	STRG.3380.1	1
scaffold_6	starts_in_intron	8634922	8634922	-	asmbl_48577	none	blat.proc3825152.chain_114	1	STRG.7743.1,STRG.7743.2,Trinity_GG_4368_c0_g1_i3,Trinity_GG_4368_c0_g1_i4,blat.proc3825152.chain_115,blat.proc3825152.chain_116	6
scaffold_5	starts_in_intron	19354097	19354097	-	asmbl_44900,asmbl_44901	none	STRG.7034.1,blat.proc3825150.chain_3160	2	STRG.7034.2,Trinity_GG_3924_c1_g1_i1,Trinity_GG_3924_c1_g1_i2,blat.proc3825150.chain_3158,blat.proc3825150.chain_3159	5
scaffold_14	retained_intron	3160506	3160911	+	asmbl_11913	none	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605	2	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1609,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	15
scaffold_20	retained_exon	10384459	10384549	+	asmbl_26960	none	STRG.23583.4	1	STRG.23583.1,STRG.23583.2,STRG.23583.3,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_670,blat.proc3825176.chain_671	7
scaffold_23	alternate_exon	7875352	7875587	-	asmbl_31051	none	STRG.26094.1,blat.proc3825160.chain_3268	2	STRG.26094.2,blat.proc3825160.chain_3269	2
scaffold_16	spliced_intron	14437676	14437729	+	asmbl_16676	none	STRG.19815.2	1	STRG.19815.1,Trinity_GG_28176_c2_g1_i1,blat.proc3825174.chain_725	3
scaffold_7	alternate_exon	18393031	18393999	-	asmbl_51476,asmbl_51477	none	Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2014,blat.proc3825152.chain_2017	4	STRG.9670.3,STRG.9670.4,blat.proc3825152.chain_2018,blat.proc3825152.chain_2020	4
scaffold_5	alt_acceptor	4755375	4755376	+	asmbl_45296	none	Trinity_GG_20552_c0_g1_i1	1	STRG.5935.1,blat.proc3825166.chain_2142,blat.proc3825166.chain_2143	3
scaffold_19	spliced_intron	7368522	7368604	-	asmbl_22241	none	STRG.22215.1,blat.proc3825158.chain_3053	2	Trinity_GG_12398_c0_g1_i2,blat.proc3825158.chain_3052	2
scaffold_2	skipped_exon	6510561	6512748	-	asmbl_23209,asmbl_23210	none	STRG.2013.2,blat.proc3825148.chain_2017	2	STRG.2013.3	1
scaffold_2	retained_intron	18610276	18610515	-	asmbl_23800	none	STRG.2736.1,Trinity_GG_1475_c0_g1_i2,blat.proc3825148.chain_2625	3	STRG.2736.3,Trinity_GG_1475_c0_g1_i1,blat.proc3825148.chain_2626	3
scaffold_18	alt_acceptor	12609003	12609004	-	asmbl_20159	none	STRG.21724.2,blat.proc3825158.chain_2614	2	STRG.21724.1	1
scaffold_13	alt_acceptor	354724	354725	-	asmbl_9301	none	Trinity_GG_8667_c0_g1_i6,blat.proc3825156.chain_307	2	STRG.15440.1,Trinity_GG_8667_c0_g1_i11,Trinity_GG_8667_c0_g1_i7,Trinity_GG_8667_c0_g1_i9,blat.proc3825156.chain_305,blat.proc3825156.chain_308,blat.proc3825156.chain_309,blat.proc3825156.chain_311	8
scaffold_6	starts_in_intron	17796363	17796363	-	asmbl_49199	none	Trinity_GG_4797_c1_g1_i1,blat.proc3825152.chain_852	2	STRG.8463.1,STRG.8463.2,STRG.8463.3,blat.proc3825152.chain_849,blat.proc3825152.chain_850,blat.proc3825152.chain_851	6
scaffold_1	retained_intron	7814114	7814497	+	asmbl_1923	none	STRG.539.1,blat.proc3825164.chain_705	2	STRG.539.2	1
scaffold_14	alt_acceptor	3431447	3431448	-	asmbl_13012	none	STRG.16936.1,blat.proc3825156.chain_1770	2	STRG.16936.2	1
scaffold_22	starts_in_intron	1707744	1707744	-	asmbl_29149	none	Trinity_GG_13841_c1_g1_i1,blat.proc3825160.chain_1961	2	STRG.24761.1,STRG.24761.2,Trinity_GG_13841_c0_g1_i1,Trinity_GG_13841_c0_g1_i3,blat.proc3825160.chain_1958,blat.proc3825160.chain_1959	6
scaffold_7	retained_intron	1386162	1387009	-	asmbl_50721,asmbl_50722,asmbl_50723,asmbl_50724	none	blat.proc3825152.chain_1117,blat.proc3825152.chain_1118,blat.proc3825152.chain_1119,blat.proc3825152.chain_1123	4	STRG.8652.1,STRG.8652.2,blat.proc3825152.chain_1124	3
scaffold_17	alt_acceptor	1727875	1727876	+	asmbl_18627	none	STRG.20007.2	1	STRG.20007.1,blat.proc3825174.chain_839	2
scaffold_14	starts_in_intron	1608922	1608922	+	asmbl_11831	none	blat.proc3825172.chain_1587	1	STRG.16804.1,STRG.16804.2,Trinity_GG_26566_c0_g2_i2,blat.proc3825172.chain_1588	4
scaffold_2	spliced_intron	13894429	13894871	+	asmbl_24860	none	STRG.2380.1,Trinity_GG_18645_c0_g1_i2,blat.proc3825164.chain_2569	3	Trinity_GG_18645_c0_g1_i1,blat.proc3825164.chain_2570	2
scaffold_13	alt_donor	3085120	3085121	+	asmbl_10656	none	STRG.15621.2,blat.proc3825172.chain_370	2	STRG.15621.1,blat.proc3825172.chain_372	2
scaffold_8	alt_acceptor	10484362	10484363	+	asmbl_53174	none	blat.proc3825168.chain_2873	1	STRG.10286.2,blat.proc3825168.chain_2874	2
scaffold_8	ends_in_intron	8173140	8173140	+	asmbl_53009	none	blat.proc3825168.chain_2702	1	STRG.10103.3	1
scaffold_1	skipped_exon	18763264	18766130	+	asmbl_2569	none	STRG.1311.1	1	STRG.1311.2,STRG.1311.3	2
scaffold_11	alt_acceptor	8331390	8331391	+	asmbl_5750	none	STRG.13849.1,Trinity_GG_24932_c0_g1_i1,blat.proc3825170.chain_2372	3	Trinity_GG_24932_c0_g1_i2,blat.proc3825170.chain_2371	2
scaffold_4	spliced_intron	4103839	4104240	+	asmbl_41231,asmbl_41232	none	STRG.4316.2,blat.proc3825166.chain_696	2	STRG.4316.1,Trinity_GG_19673_c0_g1_i6,blat.proc3825166.chain_690,blat.proc3825166.chain_693,blat.proc3825166.chain_697	5
scaffold_24	starts_in_intron	7635458	7635458	-	asmbl_33043	none	blat.proc3825162.chain_170	1	STRG.26805.1,STRG.26805.2,blat.proc3825162.chain_169	3
scaffold_25	retained_intron	6253400	6253539	+	asmbl_33603,asmbl_33604	none	Trinity_GG_32481_c0_g1_i2,blat.proc3825178.chain_623,blat.proc3825178.chain_624	3	STRG.27510.1,blat.proc3825178.chain_625,blat.proc3825178.chain_626	3
scaffold_25	skipped_exon	9119255	9119846	+	asmbl_33786,asmbl_33787	none	STRG.27725.4,STRG.27725.6	2	STRG.27725.5	1
scaffold_24	starts_in_intron	2964799	2964799	-	asmbl_32808	none	blat.proc3825160.chain_3585	1	STRG.26507.1,blat.proc3825160.chain_3584,blat.proc3825160.chain_3586	3
scaffold_1	starts_in_intron	201835	201835	+	asmbl_1408	none	Trinity_GG_17336_c0_g1_i1,blat.proc3825164.chain_117	2	STRG.17.1,Trinity_GG_17336_c0_g1_i2,blat.proc3825164.chain_116	3
scaffold_15	retained_intron	522528	522575	+	asmbl_14985	none	STRG.17914.2	1	STRG.17914.3	1
scaffold_1	spliced_intron	3679992	3680248	+	asmbl_1625,asmbl_1627	none	STRG.242.1,blat.proc3825164.chain_366,blat.proc3825164.chain_368	3	blat.proc3825164.chain_369	1
scaffold_28	retained_intron	295538	295617	+	asmbl_37271	none	blat.proc3825178.chain_2489	1	STRG.29263.1,STRG.29263.2,STRG.29263.3,blat.proc3825178.chain_2488,blat.proc3825178.chain_2490,blat.proc3825178.chain_2492	6
scaffold_6	skipped_exon	17522092	17523322	+	asmbl_47763	none	STRG.8455.3	1	STRG.8455.1,STRG.8455.4,blat.proc3825168.chain_892	3
scaffold_1	ends_in_intron	21422903	21422903	-	asmbl_1213	none	blat.proc3825148.chain_1437	1	STRG.1446.1,blat.proc3825148.chain_1436	2
scaffold_6	alternate_exon	3535906	3536167	-	asmbl_48269	none	blat.proc3825150.chain_3489	1	blat.proc3825150.chain_3488	1
scaffold_8	spliced_intron	3615695	3615920	+	asmbl_52790	none	STRG.9863.3	1	STRG.9863.1,blat.proc3825168.chain_2410	2
scaffold_23	retained_exon	8102805	8102862	+	asmbl_31758	none	STRG.26124.1	1	STRG.26124.2	1
scaffold_8	starts_in_intron	10134713	10134713	+	asmbl_53147	none	STRG.10269.2	1	STRG.10269.1,Trinity_GG_23027_c0_g1_i1,blat.proc3825168.chain_2838	3
scaffold_10	alternate_exon	8317759	8318006	-	asmbl_4574	none	STRG.12589.2	1	STRG.12589.1	1
scaffold_5	starts_in_intron	18196223	18196223	+	asmbl_46216	none	Trinity_GG_21130_c0_g1_i1,blat.proc3825166.chain_3144	2	STRG.6958.1,Trinity_GG_21130_c0_g1_i2,Trinity_GG_21130_c0_g1_i3,blat.proc3825166.chain_3143,blat.proc3825166.chain_3146	5
scaffold_6	alt_acceptor	3326373	3326374	+	asmbl_46831,asmbl_46833	none	STRG.7340.2,STRG.7340.3,blat.proc3825166.chain_3446	3	STRG.7340.1,blat.proc3825166.chain_3445	2
scaffold_21	alternate_exon	3125921	3126244	-	asmbl_27515	none	STRG.23943.2,blat.proc3825160.chain_1058	2	STRG.23943.1,blat.proc3825160.chain_1059	2
scaffold_5	alternate_exon	4628791	4629174	-	asmbl_43964	none	STRG.5917.3,Trinity_GG_3326_c0_g1_i1,blat.proc3825150.chain_2106	3	STRG.5917.2,blat.proc3825150.chain_2104	2
scaffold_6	alt_acceptor	13277367	13277368	+	asmbl_47519	none	blat.proc3825168.chain_520	1	STRG.8090.2,STRG.8090.3,STRG.8090.4,blat.proc3825168.chain_518,blat.proc3825168.chain_519	5
scaffold_14	alt_donor	13380889	13380890	-	asmbl_13637	none	STRG.17630.2,blat.proc3825156.chain_2402	2	STRG.17630.1,Trinity_GG_9874_c0_g1_i4,blat.proc3825156.chain_2403,blat.proc3825156.chain_2404	4
scaffold_3	spliced_intron	13647877	13648874	-	asmbl_39274	none	STRG.3709.3,Trinity_GG_2039_c0_g1_i3,blat.proc3825148.chain_3599	3	STRG.3709.1,Trinity_GG_2039_c0_g1_i2,blat.proc3825148.chain_3601	3
scaffold_16	spliced_intron	14662578	14662669	-	asmbl_17489,asmbl_17491	none	STRG.19865.1,STRG.19865.2,blat.proc3825158.chain_908	3	blat.proc3825158.chain_907	1
scaffold_25	alternate_exon	3172559	3172595	-	asmbl_34107	none	STRG.27255.2,Trinity_GG_15250_c0_g1_i3,blat.proc3825162.chain_590	3	STRG.27255.1,Trinity_GG_15250_c0_g1_i1,blat.proc3825162.chain_591	3
scaffold_25	skipped_exon	4319201	4320037	+	asmbl_33487,asmbl_33488	none	STRG.27360.2,Trinity_GG_32398_c0_g1_i2,blat.proc3825178.chain_467,blat.proc3825178.chain_468	4	STRG.27360.1,STRG.27360.3,Trinity_GG_32398_c0_g1_i1,blat.proc3825178.chain_466,blat.proc3825178.chain_469	5
scaffold_17	alternate_exon	8884850	8884915	+	asmbl_19045	none	STRG.20512.2,Trinity_GG_28552_c0_g1_i2,blat.proc3825174.chain_1372	3	STRG.20512.1,blat.proc3825174.chain_1371	2
scaffold_10	alt_acceptor	2678282	2678283	+	asmbl_2993	none	STRG.12083.2	1	STRG.12083.1,STRG.12083.3,STRG.12083.4,blat.proc3825170.chain_832	4
scaffold_3	spliced_intron	5774678	5774814	-	asmbl_38860,asmbl_38861,asmbl_38865	none	STRG.3244.1,STRG.3244.4,blat.proc3825148.chain_3041	3	STRG.3244.2,STRG.3244.3,Trinity_GG_1733_c0_g1_i4,blat.proc3825148.chain_3039	4
scaffold_18	alternate_exon	8871741	8882158	-	asmbl_20036,asmbl_20038	none	STRG.21551.1,blat.proc3825158.chain_2468,blat.proc3825158.chain_2471	3	STRG.21551.4,STRG.21551.5,Trinity_GG_12055_c0_g1_i2,Trinity_GG_12055_c0_g1_i3,blat.proc3825158.chain_2469,blat.proc3825158.chain_2470	6
scaffold_5	retained_intron	6835252	6835402	-	asmbl_44151	none	STRG.6090.2	1	STRG.6090.1,blat.proc3825150.chain_2309	2
scaffold_27	ends_in_intron	3020545	3020545	+	asmbl_36173	none	blat.proc3825178.chain_1874	1	STRG.28790.1,STRG.28790.2,blat.proc3825178.chain_1868,blat.proc3825178.chain_1872,blat.proc3825178.chain_1873	5
scaffold_12	alt_donor	6420446	6420447	+	asmbl_7685	none	blat.proc3825170.chain_3272	1	STRG.14753.1,STRG.14753.2,STRG.14753.3,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274,blat.proc3825170.chain_3275	6
scaffold_23	ends_in_intron	2612353	2612353	-	asmbl_30753	none	STRG.25729.2,blat.proc3825160.chain_2928	2	STRG.25729.1,blat.proc3825160.chain_2923,blat.proc3825160.chain_2925,blat.proc3825160.chain_2926	4
scaffold_10	alt_donor	337701	337702	-	asmbl_3937	none	STRG.11918.4	1	STRG.11918.1,STRG.11918.2,STRG.11918.3,Trinity_GG_6626_c0_g1_i4,blat.proc3825154.chain_441,blat.proc3825154.chain_442,blat.proc3825154.chain_443,blat.proc3825154.chain_444	8
scaffold_23	spliced_intron	7044875	7045050	-	asmbl_31012	none	STRG.26031.1,blat.proc3825160.chain_3124	2	Trinity_GG_14529_c0_g1_i2,blat.proc3825160.chain_3125	2
scaffold_13	starts_in_intron	11541280	11541280	+	asmbl_11269	none	STRG.16304.2,Trinity_GG_26235_c0_g1_i1,blat.proc3825172.chain_1021	3	STRG.16304.1,Trinity_GG_26235_c0_g1_i6,Trinity_GG_26235_c0_g1_i7,blat.proc3825172.chain_1022,blat.proc3825172.chain_1025,blat.proc3825172.chain_1026,blat.proc3825172.chain_1027	7
scaffold_4	skipped_exon	14318583	14319063	-	asmbl_43045	none	STRG.5048.2,blat.proc3825150.chain_1204	2	STRG.5048.1,STRG.5048.3,blat.proc3825150.chain_1203,blat.proc3825150.chain_1206	4
scaffold_9	retained_exon	3198855	3198923	+	asmbl_53881	none	STRG.10935.2,Trinity_GG_23358_c0_g1_i3,blat.proc3825168.chain_3407	3	STRG.10935.1,blat.proc3825168.chain_3408	2
scaffold_8	ends_in_intron	336681	336681	+	asmbl_52652	none	blat.proc3825168.chain_2224	1	STRG.9719.1,blat.proc3825168.chain_2223	2
scaffold_4	alt_acceptor	14285618	14285619	-	asmbl_43037,asmbl_43038	none	STRG.5037.1,STRG.5037.2,blat.proc3825150.chain_1100,blat.proc3825150.chain_1101	4	STRG.5037.3,STRG.5037.4	2
scaffold_13	spliced_intron	14982062	14982116	-	asmbl_10220	none	STRG.16543.2	1	STRG.16543.1	1
scaffold_28	retained_exon	3117420	3117491	-	asmbl_38132	none	STRG.29518.1,blat.proc3825162.chain_2652	2	STRG.29518.2	1
scaffold_13	ends_in_intron	362178	362178	-	asmbl_9311	none	Trinity_GG_8663_c0_g1_i14,blat.proc3825156.chain_292	2	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,STRG.15442.5,Trinity_GG_8663_c0_g1_i10,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g1_i22,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_294,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_297,blat.proc3825156.chain_298,blat.proc3825156.chain_300	17
scaffold_2	spliced_intron	16288201	16288309	+	asmbl_25111	none	blat.proc3825164.chain_2853	1	blat.proc3825164.chain_2850	1
scaffold_14	skipped_exon	12761801	12763255	-	asmbl_13600,asmbl_13604	none	STRG.17591.5,blat.proc3825156.chain_2478	2	STRG.17591.1,STRG.17591.4,blat.proc3825156.chain_2479,blat.proc3825156.chain_2480	4
scaffold_1	spliced_intron	5957952	5958646	+	asmbl_1801,asmbl_1802	none	STRG.396.2,Trinity_GG_17582_c2_g1_i1,blat.proc3825164.chain_556	3	STRG.396.3,Trinity_GG_17582_c2_g1_i2,Trinity_GG_17582_c2_g1_i4,blat.proc3825164.chain_554,blat.proc3825164.chain_555	5
scaffold_1	retained_intron	14522266	14522424	-	asmbl_928	none	Trinity_GG_552_c0_g1_i2,blat.proc3825148.chain_1054	2	STRG.1050.1,STRG.1050.3,blat.proc3825148.chain_1052,blat.proc3825148.chain_1053	4
scaffold_13	skipped_exon	398875	400388	-	asmbl_9339	none	Trinity_GG_8688_c0_g2_i3,blat.proc3825156.chain_371	2	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24
scaffold_13	alt_donor	7014305	7014306	-	asmbl_9836	none	STRG.15991.2	1	STRG.15991.1,blat.proc3825156.chain_793,blat.proc3825156.chain_794	3
scaffold_15	retained_intron	15176771	15176878	+	asmbl_15731,asmbl_15735,asmbl_15741	none	blat.proc3825172.chain_3519,blat.proc3825172.chain_3524,blat.proc3825172.chain_3529	3	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3520,blat.proc3825172.chain_3521,blat.proc3825172.chain_3522,blat.proc3825172.chain_3525,blat.proc3825172.chain_3528,blat.proc3825172.chain_3530,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535,blat.proc3825172.chain_3536	13
scaffold_2	starts_in_intron	16287699	16287699	+	asmbl_25113,asmbl_25114	none	blat.proc3825164.chain_2850,blat.proc3825164.chain_2851	2	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2852,blat.proc3825164.chain_2853	4
scaffold_25	alt_acceptor	3086682	3086683	-	asmbl_34092,asmbl_34093,asmbl_34095	none	STRG.27251.2,STRG.27251.3,STRG.27251.5	3	blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555,blat.proc3825162.chain_559	4
scaffold_26	alt_acceptor	222711	222712	-	asmbl_35380	none	STRG.27847.1,Trinity_GG_15625_c0_g1_i1,blat.proc3825162.chain_1196	3	STRG.27847.2	1
scaffold_23	starts_in_intron	2316840	2316840	+	asmbl_31392	none	Trinity_GG_31496_c0_g1_i3,blat.proc3825176.chain_2644	2	STRG.25706.1,STRG.25706.2,Trinity_GG_31496_c0_g1_i2,Trinity_GG_31496_c0_g1_i4,blat.proc3825176.chain_2643,blat.proc3825176.chain_2645	6
scaffold_11	spliced_intron	9083178	9083266	-	asmbl_6911,asmbl_6912	none	blat.proc3825154.chain_2463,blat.proc3825154.chain_2464	2	STRG.13943.1,Trinity_GG_7780_c0_g1_i3,blat.proc3825154.chain_2465	3
scaffold_11	starts_in_intron	12053090	12053090	-	asmbl_7069	none	blat.proc3825154.chain_2659	1	STRG.14129.1,blat.proc3825154.chain_2660	2
scaffold_13	retained_intron	7655418	7655568	+	asmbl_11061	none	Trinity_GG_26131_c0_g1_i3,blat.proc3825172.chain_820,blat.proc3825172.chain_823	3	STRG.16054.1,STRG.16054.2,blat.proc3825172.chain_821,blat.proc3825172.chain_824,blat.proc3825172.chain_825	5
scaffold_17	ends_in_intron	7116683	7116683	-	asmbl_18045,asmbl_18046	none	Trinity_GG_11453_c0_g1_i2,Trinity_GG_11453_c0_g1_i4,blat.proc3825158.chain_1405,blat.proc3825158.chain_1406	4	STRG.20381.1,STRG.20381.2,Trinity_GG_11453_c0_g1_i1,Trinity_GG_11453_c0_g1_i3,blat.proc3825158.chain_1407,blat.proc3825158.chain_1408	6
scaffold_9	starts_in_intron	11828975	11828975	-	asmbl_55317	none	blat.proc3825152.chain_3675	1	STRG.11499.1,STRG.11499.2,blat.proc3825152.chain_3676	3
scaffold_11	spliced_intron	4759244	4759351	-	asmbl_6629,asmbl_6632	none	STRG.13575.1,blat.proc3825154.chain_2095,blat.proc3825154.chain_2097	3	blat.proc3825154.chain_2096	1
scaffold_1	retained_intron	5207359	5207851	+	asmbl_1713,asmbl_1714,asmbl_1717	none	blat.proc3825164.chain_464,blat.proc3825164.chain_465,blat.proc3825164.chain_471	3	STRG.329.1,STRG.329.2,STRG.329.3,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_470,blat.proc3825164.chain_472,blat.proc3825164.chain_474,blat.proc3825164.chain_476	9
scaffold_1	spliced_intron	1271968	1272117	-	asmbl_61	none	STRG.73.1,Trinity_GG_39_c0_g1_i1,blat.proc3825148.chain_77	3	Trinity_GG_39_c0_g1_i2,blat.proc3825148.chain_76	2
scaffold_21	retained_intron	405731	406300	-	asmbl_27310,asmbl_27314,asmbl_27315,asmbl_27316	none	STRG.23739.1,Trinity_GG_13230_c0_g1_i1,Trinity_GG_13230_c0_g1_i3,Trinity_GG_13230_c0_g1_i5,Trinity_GG_13230_c0_g1_i6,blat.proc3825160.chain_864,blat.proc3825160.chain_866,blat.proc3825160.chain_867,blat.proc3825160.chain_868	9	Trinity_GG_13230_c0_g1_i7,Trinity_GG_13230_c0_g1_i8,blat.proc3825160.chain_862,blat.proc3825160.chain_863	4
scaffold_18	ends_in_intron	9635498	9635498	-	asmbl_20070	none	blat.proc3825158.chain_2484	1	STRG.21576.1,blat.proc3825158.chain_2478,blat.proc3825158.chain_2480	3
scaffold_9	alternate_exon	1704986	1705132	-	asmbl_54837	none	STRG.10868.4	1	STRG.10868.2	1
scaffold_28	ends_in_intron	9111637	9111637	+	asmbl_37770	none	blat.proc3825178.chain_3106	1	STRG.29961.1,Trinity_GG_33896_c0_g1_i1,blat.proc3825178.chain_3105	3
scaffold_8	spliced_intron	18084510	18084591	-	asmbl_52502,asmbl_52504,asmbl_52505,asmbl_52506,asmbl_52507,asmbl_52508	none	STRG.10710.1,STRG.10710.3,STRG.10710.4,STRG.10710.5,Trinity_GG_5955_c0_g1_i1,Trinity_GG_5955_c0_g1_i2,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2979,blat.proc3825152.chain_2980,blat.proc3825152.chain_2982	10	STRG.10710.2,Trinity_GG_5955_c0_g1_i3,blat.proc3825152.chain_2981	3
scaffold_3	spliced_intron	3062725	3062797	+	asmbl_39930	none	STRG.3056.2,Trinity_GG_19037_c0_g1_i2,blat.proc3825164.chain_3290	3	STRG.3056.1,blat.proc3825164.chain_3289,blat.proc3825164.chain_3291	3
scaffold_21	alt_donor	8278422	8278423	+	asmbl_28804,asmbl_28805,asmbl_28806,asmbl_28807	none	STRG.24368.1,STRG.24368.2,STRG.24368.3,STRG.24368.4	4	blat.proc3825176.chain_1550	1
scaffold_15	alt_donor	14328614	14328615	-	asmbl_14717	none	Trinity_GG_10597_c0_g1_i1,blat.proc3825156.chain_3714	2	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2
scaffold_23	starts_in_intron	5312049	5312049	+	asmbl_31560	none	Trinity_GG_31608_c0_g1_i6,blat.proc3825176.chain_2855	2	STRG.25910.2,blat.proc3825176.chain_2857	2
scaffold_5	spliced_intron	420430	420561	-	asmbl_43776	none	blat.proc3825150.chain_1845	1	STRG.5612.1	1
scaffold_25	starts_in_intron	4570407	4570407	+	asmbl_33518,asmbl_33519,asmbl_33521,asmbl_33522,asmbl_33523	none	STRG.27395.2,STRG.27395.3,Trinity_GG_32430_c0_g1_i1,Trinity_GG_32430_c0_g1_i4,Trinity_GG_32430_c0_g1_i6,Trinity_GG_32430_c0_g1_i9,blat.proc3825178.chain_528,blat.proc3825178.chain_529,blat.proc3825178.chain_531,blat.proc3825178.chain_532	10	STRG.27395.1	1
scaffold_9	alternate_exon	16566226	16567708	-	asmbl_55584,asmbl_55585,asmbl_55586	none	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_271	5	blat.proc3825154.chain_272,blat.proc3825154.chain_273	2
scaffold_24	retained_intron	9952112	9952301	-	asmbl_33155,asmbl_33156,asmbl_33159,asmbl_33160,asmbl_33161,asmbl_33162	none	STRG.26968.2,STRG.26968.6,STRG.26968.8,Trinity_GG_15063_c0_g1_i6,blat.proc3825162.chain_269,blat.proc3825162.chain_273	6	STRG.26968.1,Trinity_GG_15063_c0_g1_i3,blat.proc3825162.chain_274,blat.proc3825162.chain_275	4
scaffold_13	retained_intron	3999070	3999310	-	asmbl_9601	none	blat.proc3825156.chain_607	1	STRG.15726.1,blat.proc3825156.chain_606,blat.proc3825156.chain_608	3
scaffold_15	starts_in_intron	15501163	15501163	+	asmbl_15800,asmbl_15801	none	Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601	4	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,blat.proc3825172.chain_3602	3
scaffold_5	alternate_exon	18560636	18560742	+	asmbl_46272,asmbl_46273	none	STRG.6987.6,Trinity_GG_21132_c0_g1_i4	2	STRG.6987.1,STRG.6987.2,STRG.6987.3,STRG.6987.4,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i3,Trinity_GG_21132_c0_g1_i7,Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3149,blat.proc3825166.chain_3153,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	14
scaffold_15	spliced_intron	13327877	13328035	+	asmbl_15626,asmbl_15633,asmbl_15634,asmbl_15635,asmbl_15636,asmbl_15637	none	STRG.18771.1,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389	6	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	6
scaffold_17	alt_acceptor	14633404	14633405	+	asmbl_19416,asmbl_19417	none	STRG.20943.1,STRG.20943.3	2	blat.proc3825174.chain_1755	1
scaffold_5	skipped_exon	7708375	7708743	+	asmbl_45500,asmbl_45501,asmbl_45502	none	STRG.6149.1,Trinity_GG_20669_c0_g1_i3,blat.proc3825166.chain_2364,blat.proc3825166.chain_2365,blat.proc3825166.chain_2366	5	STRG.6149.2	1
scaffold_27	retained_intron	4123018	4123064	+	asmbl_36255	none	STRG.28870.1,Trinity_GG_33282_c0_g1_i1,Trinity_GG_33282_c0_g1_i2,blat.proc3825178.chain_2024,blat.proc3825178.chain_2025	5	STRG.28870.2	1
scaffold_11	alternate_exon	4672820	4673035	-	asmbl_6613	none	Trinity_GG_7606_c0_g2_i2,blat.proc3825154.chain_2156	2	STRG.13564.2,STRG.13564.3,STRG.13564.4,blat.proc3825154.chain_2157,blat.proc3825154.chain_2158,blat.proc3825154.chain_2159	6
scaffold_11	alt_donor	848237	848238	+	asmbl_5302	none	STRG.13282.2	1	STRG.13282.1,blat.proc3825170.chain_1843	2
scaffold_18	starts_in_intron	12935348	12935348	+	asmbl_20983	none	blat.proc3825158.chain_2618	1	STRG.21740.2	1
scaffold_6	alt_donor	3385103	3385104	-	asmbl_48256,asmbl_48257,asmbl_48259	none	STRG.7350.1,blat.proc3825150.chain_3477,blat.proc3825150.chain_3479,blat.proc3825150.chain_3481	4	STRG.7350.2,blat.proc3825150.chain_3478	2
scaffold_8	retained_intron	11810388	11810529	+	asmbl_53269	none	blat.proc3825168.chain_2986	1	STRG.10386.1,blat.proc3825168.chain_2984,blat.proc3825168.chain_2987	3
scaffold_9	ends_in_intron	5327617	5327617	-	asmbl_55006	none	Trinity_GG_6164_c0_g1_i1,blat.proc3825152.chain_3354	2	STRG.11110.1,blat.proc3825152.chain_3355	2
scaffold_3	retained_intron	192086	192185	+	asmbl_39809	none	Trinity_GG_18954_c0_g1_i2,blat.proc3825164.chain_3146,blat.proc3825164.chain_3147	3	STRG.2892.1	1
scaffold_14	spliced_intron	9475827	9475918	+	asmbl_12284,asmbl_12286	none	STRG.17340.2,STRG.17340.3,Trinity_GG_26857_c0_g1_i1,blat.proc3825172.chain_2108	4	STRG.17340.1,Trinity_GG_26857_c0_g1_i2,blat.proc3825172.chain_2107	3
scaffold_15	retained_intron	13325003	13325087	+	asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15637	none	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	6	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389	8
scaffold_27	alternate_exon	1605597	1606821	-	asmbl_36768	none	STRG.28650.1,Trinity_GG_16047_c2_g1_i1,blat.proc3825162.chain_1919	3	Trinity_GG_16047_c1_g1_i1,blat.proc3825162.chain_1918	2
scaffold_6	retained_intron	15762366	15762448	-	asmbl_49081,asmbl_49084,asmbl_49085	none	STRG.8318.3,blat.proc3825152.chain_757,blat.proc3825152.chain_759	3	STRG.8318.1,STRG.8318.2,blat.proc3825152.chain_758	3
scaffold_11	skipped_exon	16484013	16486899	-	asmbl_7224	none	STRG.14339.2	1	STRG.14339.3	1
scaffold_23	alt_acceptor	10739089	10739090	-	asmbl_31153,asmbl_31154	none	STRG.26265.2,blat.proc3825160.chain_3344	2	STRG.26265.1,blat.proc3825160.chain_3343	2
scaffold_16	alternate_exon	14480022	14485511	+	asmbl_16682	none	STRG.19826.2	1	blat.proc3825174.chain_747	1
scaffold_1	retained_exon	1562434	1562526	+	asmbl_1492	none	STRG.101.2	1	STRG.101.1,blat.proc3825164.chain_211	2
scaffold_25	spliced_intron	5776337	5776529	+	asmbl_33581	none	STRG.27472.2	1	STRG.27472.1,blat.proc3825178.chain_588	2
scaffold_21	ends_in_intron	525723	525723	+	asmbl_28275	none	Trinity_GG_30471_c2_g1_i1,blat.proc3825176.chain_964	2	STRG.23745.1,Trinity_GG_30471_c0_g1_i1,Trinity_GG_30471_c0_g1_i2,blat.proc3825176.chain_961,blat.proc3825176.chain_962	5
scaffold_7	spliced_intron	8659757	8660031	-	asmbl_51028	none	STRG.9099.2	1	blat.proc3825152.chain_1497,blat.proc3825152.chain_1498	2
scaffold_11	retained_intron	13035748	13036295	-	asmbl_7115	none	STRG.14179.2,blat.proc3825154.chain_2758	2	STRG.14179.3,blat.proc3825154.chain_2756	2
scaffold_25	retained_exon	4467883	4467984	-	asmbl_34192	none	STRG.27380.2	1	STRG.27380.1	1
scaffold_6	alt_acceptor	8581386	8581387	+	asmbl_47153	none	STRG.7738.2	1	blat.proc3825168.chain_179,blat.proc3825168.chain_181	2
scaffold_21	alternate_exon	3829609	3831145	-	asmbl_27546,asmbl_27547,asmbl_27548	none	STRG.23974.1,STRG.23974.2,STRG.23974.4,blat.proc3825160.chain_1116,blat.proc3825160.chain_1117,blat.proc3825160.chain_1118	6	STRG.23974.3	1
scaffold_15	ends_in_intron	15443231	15443231	+	asmbl_15792	none	blat.proc3825172.chain_3623	1	Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3619,blat.proc3825172.chain_3626	4
scaffold_16	retained_intron	743885	744041	-	asmbl_16895	none	Trinity_GG_10701_c0_g1_i2,blat.proc3825158.chain_190	2	STRG.19055.1,blat.proc3825158.chain_184,blat.proc3825158.chain_185,blat.proc3825158.chain_186,blat.proc3825158.chain_187,blat.proc3825158.chain_188,blat.proc3825158.chain_189	7
scaffold_23	spliced_intron	2160936	2161036	+	asmbl_31377	none	STRG.25689.1,blat.proc3825176.chain_2630	2	blat.proc3825176.chain_2629	1
scaffold_23	retained_intron	4314274	4314425	+	asmbl_31496,asmbl_31498	none	Trinity_GG_31566_c0_g1_i9,blat.proc3825176.chain_2779	2	STRG.25852.1,Trinity_GG_31566_c0_g2_i1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2777,blat.proc3825176.chain_2781	6
scaffold_3	starts_in_intron	18186760	18186760	+	asmbl_40732	none	STRG.4032.5	1	blat.proc3825166.chain_447	1
scaffold_6	ends_in_intron	5265500	5265500	+	asmbl_46937	none	blat.proc3825166.chain_3699	1	STRG.7498.1,STRG.7498.3,blat.proc3825166.chain_3700	3
scaffold_5	retained_intron	5060700	5061166	+	asmbl_45339,asmbl_45341,asmbl_45342	none	STRG.5963.3,STRG.5963.4,Trinity_GG_20579_c0_g1_i2,blat.proc3825166.chain_2190	4	STRG.5963.1,STRG.5963.2,blat.proc3825166.chain_2192	3
scaffold_7	alt_donor	17313645	17313646	+	asmbl_50479	none	STRG.9607.3	1	STRG.9607.1,STRG.9607.2,blat.proc3825168.chain_2128	3
scaffold_2	starts_in_intron	7828290	7828290	-	asmbl_23282,asmbl_23284,asmbl_23285	none	STRG.2078.2,STRG.2078.3,Trinity_GG_1152_c0_g1_i2,blat.proc3825148.chain_2095	4	STRG.2078.1,Trinity_GG_1152_c0_g1_i3,Trinity_GG_1152_c0_g1_i5,blat.proc3825148.chain_2093,blat.proc3825148.chain_2094	5
scaffold_26	ends_in_intron	9840433	9840433	-	asmbl_35794,asmbl_35796	none	Trinity_GG_15923_c0_g1_i3,Trinity_GG_15923_c0_g1_i4,blat.proc3825162.chain_1673,blat.proc3825162.chain_1674	4	STRG.28545.2	1
scaffold_15	alternate_exon	15849289	15849630	+	asmbl_15822,asmbl_15823,asmbl_15825	none	STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3568,blat.proc3825172.chain_3570,blat.proc3825172.chain_3574	8	STRG.18973.1,STRG.18973.2,STRG.18973.3,blat.proc3825172.chain_3571,blat.proc3825172.chain_3575,blat.proc3825172.chain_3577	6
scaffold_3	alt_donor	6832383	6832384	+	asmbl_40138,asmbl_40139	none	STRG.3309.1,blat.proc3825164.chain_3582,blat.proc3825164.chain_3583	3	STRG.3309.2	1
scaffold_6	ends_in_intron	16468324	16468324	+	asmbl_47699	none	STRG.8376.1,blat.proc3825168.chain_822	2	STRG.8376.2,blat.proc3825168.chain_821	2
scaffold_1	starts_in_intron	1989672	1989672	-	asmbl_102	none	STRG.125.1,blat.proc3825148.chain_114	2	Trinity_GG_70_c0_g1_i1,blat.proc3825148.chain_113	2
scaffold_22	retained_intron	214606	214723	+	asmbl_29820,asmbl_29822	none	Trinity_GG_30960_c0_g1_i4,blat.proc3825176.chain_1806,blat.proc3825176.chain_1808	3	STRG.24676.1,STRG.24676.2,STRG.24676.3,STRG.24676.5,blat.proc3825176.chain_1807	5
scaffold_17	starts_in_intron	791760	791760	+	asmbl_18577	none	STRG.19934.3	1	STRG.19934.1,STRG.19934.2	2
scaffold_27	skipped_exon	6782164	6782627	-	asmbl_37081	none	STRG.29050.2,blat.proc3825162.chain_2276	2	STRG.29050.3,blat.proc3825162.chain_2278	2
scaffold_23	starts_in_intron	6859640	6859640	-	asmbl_30982,asmbl_30988	none	STRG.26018.2,blat.proc3825160.chain_3203	2	STRG.26018.3,Trinity_GG_14570_c0_g1_i10,blat.proc3825160.chain_3200	3
scaffold_8	starts_in_intron	18435130	18435130	+	asmbl_53552	none	Trinity_GG_23267_c0_g1_i3,blat.proc3825168.chain_3266	2	STRG.10742.1,STRG.10742.2,blat.proc3825168.chain_3265	3
scaffold_5	spliced_intron	10195447	10195577	-	asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44324,asmbl_44326	none	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531,blat.proc3825150.chain_2533	8	blat.proc3825150.chain_2532	1
scaffold_26	alternate_exon	2249424	2249641	+	asmbl_34734,asmbl_34737	none	STRG.27955.1,blat.proc3825178.chain_1017,blat.proc3825178.chain_1018	3	STRG.27955.2	1
scaffold_21	alternate_exon	11272490	11272852	-	asmbl_28118	none	STRG.24607.4	1	blat.proc3825160.chain_1824,blat.proc3825160.chain_1825	2
scaffold_8	alt_acceptor	3102135	3102136	-	asmbl_51730,asmbl_51732	none	STRG.9828.1,blat.proc3825152.chain_2114,blat.proc3825152.chain_2115	3	STRG.9828.2	1
scaffold_6	alt_donor	9987206	9987207	-	asmbl_48644,asmbl_48646	none	STRG.7839.1,blat.proc3825152.chain_198,blat.proc3825152.chain_201	3	STRG.7839.2,blat.proc3825152.chain_199	2
scaffold_7	retained_intron	4545952	4546317	+	asmbl_49746,asmbl_49747	none	blat.proc3825168.chain_1299,blat.proc3825168.chain_1300	2	STRG.8829.1,blat.proc3825168.chain_1298,blat.proc3825168.chain_1301	3
scaffold_7	spliced_intron	8795676	8795757	+	asmbl_50056	none	blat.proc3825168.chain_1653	1	blat.proc3825168.chain_1652	1
scaffold_19	alt_donor	7587074	7587075	-	asmbl_22246	none	STRG.22238.1	1	STRG.22238.2	1
scaffold_1	alternate_exon	20755351	20755380	+	asmbl_2653	none	blat.proc3825164.chain_1496	1	STRG.1422.1,blat.proc3825164.chain_1497,blat.proc3825164.chain_1498	3
scaffold_17	skipped_exon	5096466	5097292	+	asmbl_18812	none	STRG.20239.2	1	STRG.20239.1,blat.proc3825174.chain_1090	2
scaffold_10	alternate_exon	16252754	16257717	+	asmbl_3710	none	STRG.13106.3	1	STRG.13106.4	1
scaffold_6	alt_acceptor	12920078	12920079	+	asmbl_47451	none	STRG.8050.1,blat.proc3825168.chain_421	2	STRG.8050.2	1
scaffold_1	retained_intron	14355835	14355988	-	asmbl_901	none	blat.proc3825148.chain_1038	1	blat.proc3825148.chain_1036	1
scaffold_6	retained_intron	6755355	6755511	-	asmbl_48464	none	STRG.7586.1	1	blat.proc3825150.chain_3696	1
scaffold_1	starts_in_intron	18516286	18516286	-	asmbl_1119	none	blat.proc3825148.chain_1311	1	STRG.1301.1,blat.proc3825148.chain_1312	2
scaffold_26	retained_intron	3361212	3361377	+	asmbl_34775	none	blat.proc3825178.chain_1041	1	STRG.28022.2,blat.proc3825178.chain_1043	2
scaffold_9	starts_in_intron	9870286	9870286	-	asmbl_55244,asmbl_55246	none	STRG.11356.3,blat.proc3825152.chain_3584	2	STRG.11356.1,Trinity_GG_6280_c0_g1_i1,Trinity_GG_6280_c0_g1_i6,blat.proc3825152.chain_3582,blat.proc3825152.chain_3583	5
scaffold_14	ends_in_intron	12713585	12713585	-	asmbl_13592	none	Trinity_GG_9879_c0_g1_i1,blat.proc3825156.chain_2410	2	STRG.17583.1,Trinity_GG_9879_c0_g1_i2,blat.proc3825156.chain_2411	3
scaffold_1	alt_acceptor	2119515	2119516	-	asmbl_113	none	STRG.141.2	1	STRG.141.1,blat.proc3825148.chain_85	2
scaffold_3	alt_donor	18321166	18321167	-	asmbl_39608	none	STRG.4034.1	1	STRG.4034.2	1
scaffold_2	skipped_exon	893116	894302	+	asmbl_24136,asmbl_24143,asmbl_24145	none	STRG.1566.1,blat.proc3825164.chain_1726,blat.proc3825164.chain_1727,blat.proc3825164.chain_1729	4	STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725	3
scaffold_28	retained_exon	7229350	7229926	+	asmbl_37638	none	STRG.29787.1,blat.proc3825178.chain_2935	2	STRG.29787.2	1
scaffold_14	starts_in_intron	5627612	5627612	+	asmbl_12035	none	Trinity_GG_26692_c1_g1_i1,blat.proc3825172.chain_1808	2	STRG.17044.1,blat.proc3825172.chain_1807	2
scaffold_14	retained_exon	6369532	6369599	+	asmbl_12071,asmbl_12072,asmbl_12074	none	STRG.17085.2,STRG.17085.3,blat.proc3825172.chain_1854,blat.proc3825172.chain_1855,blat.proc3825172.chain_1856	5	STRG.17085.1	1
scaffold_3	alt_donor	7591047	7591048	+	asmbl_40167	none	STRG.3351.1,blat.proc3825164.chain_3630	2	blat.proc3825164.chain_3629	1
scaffold_12	alt_donor	8915430	8915431	+	asmbl_7837	none	STRG.14900.1,blat.proc3825170.chain_3475	2	STRG.14900.2	1
scaffold_8	ends_in_intron	6306584	6306584	+	asmbl_52962	none	blat.proc3825168.chain_2628	1	STRG.10033.1,blat.proc3825168.chain_2625,blat.proc3825168.chain_2626,blat.proc3825168.chain_2629	4
scaffold_8	alt_acceptor	4873090	4873091	+	asmbl_52867,asmbl_52868	none	STRG.9952.4,Trinity_GG_22853_c0_g1_i4,blat.proc3825168.chain_2514,blat.proc3825168.chain_2515	4	STRG.9952.2,STRG.9952.3,blat.proc3825168.chain_2518,blat.proc3825168.chain_2519	4
scaffold_23	spliced_intron	6632892	6633001	+	asmbl_31634,asmbl_31636,asmbl_31637,asmbl_31638,asmbl_31639	none	STRG.26012.1,STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2895,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897	6	blat.proc3825176.chain_2898	1
scaffold_22	starts_in_intron	10744673	10744673	-	asmbl_29620	none	Trinity_GG_14230_c0_g1_i1	1	STRG.25412.1,Trinity_GG_14230_c0_g1_i2,blat.proc3825160.chain_2585	3
scaffold_4	alternate_exon	3219454	3219537	-	asmbl_42413	none	STRG.4243.1,Trinity_GG_2320_c0_g1_i1,blat.proc3825150.chain_390	3	STRG.4243.2,Trinity_GG_2320_c0_g1_i2,blat.proc3825150.chain_391	3
scaffold_14	alternate_exon	14149323	14150151	+	asmbl_12523,asmbl_12524,asmbl_12527	none	STRG.17687.2,Trinity_GG_27000_c0_g1_i5,blat.proc3825172.chain_2357,blat.proc3825172.chain_2358,blat.proc3825172.chain_2359	5	STRG.17687.4	1
scaffold_28	starts_in_intron	4562694	4562694	-	asmbl_38216,asmbl_38217	none	STRG.29632.2,blat.proc3825162.chain_2816	2	STRG.29632.1,Trinity_GG_16613_c0_g1_i4,blat.proc3825162.chain_2817	3
scaffold_3	retained_intron	12445250	12446860	+	asmbl_40403	none	STRG.3639.1,Trinity_GG_19365_c0_g1_i1,blat.proc3825166.chain_156	3	blat.proc3825166.chain_155	1
scaffold_16	alternate_exon	14614441	14614521	-	asmbl_17475	none	STRG.19858.5,blat.proc3825158.chain_912	2	STRG.19858.3,STRG.19858.4,blat.proc3825158.chain_911,blat.proc3825158.chain_914	4
scaffold_4	alt_donor	666190	666191	-	asmbl_42339,asmbl_42340	none	STRG.4141.1,blat.proc3825150.chain_297,blat.proc3825150.chain_299	3	blat.proc3825150.chain_298	1
scaffold_7	skipped_exon	9836258	9836660	-	asmbl_51079,asmbl_51081	none	STRG.9181.4,blat.proc3825152.chain_1507,blat.proc3825152.chain_1509	3	STRG.9181.2,STRG.9181.3,blat.proc3825152.chain_1508	3
scaffold_1	ends_in_intron	9163552	9163552	-	asmbl_516,asmbl_517,asmbl_518	none	blat.proc3825148.chain_612,blat.proc3825148.chain_613,blat.proc3825148.chain_614	3	STRG.612.1	1
scaffold_13	starts_in_intron	8010743	8010743	+	asmbl_11090	none	Trinity_GG_26119_c0_g2_i1,blat.proc3825172.chain_790	2	STRG.16081.1,blat.proc3825172.chain_788	2
scaffold_19	starts_in_intron	11483549	11483549	-	asmbl_22406,asmbl_22410	none	blat.proc3825158.chain_3245,blat.proc3825158.chain_3246	2	STRG.22486.2,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247	3
scaffold_10	alt_acceptor	8335736	8335737	+	asmbl_3314	none	STRG.12594.2	1	STRG.12594.1,Trinity_GG_24262_c0_g1_i1,blat.proc3825170.chain_1212	3
scaffold_10	starts_in_intron	15426908	15426908	+	asmbl_3688	none	blat.proc3825170.chain_1670	1	STRG.13064.1,STRG.13064.2,STRG.13064.3	3
scaffold_2	alt_donor	9812012	9812013	-	asmbl_23390,asmbl_23391	none	STRG.2196.1,STRG.2196.2,blat.proc3825148.chain_2227,blat.proc3825148.chain_2228	4	STRG.2196.3	1
scaffold_18	retained_intron	3105935	3106050	-	asmbl_19746	none	STRG.21154.1,Trinity_GG_11854_c1_g1_i3,blat.proc3825158.chain_2128	3	STRG.21154.2,blat.proc3825158.chain_2127	2
scaffold_16	alternate_exon	14544532	14544695	-	asmbl_17463	none	STRG.19850.3	1	STRG.19850.1	1
scaffold_4	spliced_intron	5231186	5231400	-	asmbl_42573,asmbl_42576,asmbl_42577	none	STRG.4416.3,STRG.4416.4,STRG.4416.5,blat.proc3825150.chain_649	4	Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_650,blat.proc3825150.chain_651	3
scaffold_15	starts_in_intron	7745804	7745804	-	asmbl_14308	none	STRG.18349.2,blat.proc3825156.chain_3199	2	STRG.18349.1,blat.proc3825156.chain_3198	2
scaffold_14	alt_donor	12628984	12628985	-	asmbl_13579,asmbl_13580,asmbl_13581,asmbl_13582,asmbl_13583,asmbl_13587	none	STRG.17582.1,STRG.17582.2,STRG.17582.3,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2420,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	10	STRG.17582.5,blat.proc3825156.chain_2417	2
scaffold_2	retained_intron	6679470	6679625	-	asmbl_23221	none	STRG.2027.1,Trinity_GG_1126_c0_g1_i5,blat.proc3825148.chain_2028	3	STRG.2027.3,Trinity_GG_1126_c0_g1_i2,blat.proc3825148.chain_2027	3
scaffold_26	alt_donor	5404197	5404198	+	asmbl_34987	none	STRG.28247.1	1	blat.proc3825178.chain_1295	1
scaffold_9	ends_in_intron	9690405	9690405	-	asmbl_55236	none	Trinity_GG_6293_c1_g1_i1	1	STRG.11346.1,STRG.11346.2,STRG.11346.3,blat.proc3825152.chain_3613,blat.proc3825152.chain_3614,blat.proc3825152.chain_3615,blat.proc3825152.chain_3616	7
scaffold_26	alt_acceptor	6301389	6301390	-	asmbl_35668	none	STRG.28327.1,blat.proc3825162.chain_1559	2	STRG.28327.2,STRG.28327.3,blat.proc3825162.chain_1558,blat.proc3825162.chain_1560	4
scaffold_21	retained_intron	1633782	1633907	+	asmbl_28343	none	STRG.23818.1,blat.proc3825176.chain_1045	2	STRG.23818.2,blat.proc3825176.chain_1047	2
scaffold_3	spliced_intron	17094412	17095225	-	asmbl_39537,asmbl_39538	none	STRG.3949.1,STRG.3949.2,blat.proc3825150.chain_131	3	Trinity_GG_2181_c0_g1_i2,blat.proc3825150.chain_130,blat.proc3825150.chain_132	3
scaffold_7	spliced_intron	11146814	11146910	+	asmbl_50150,asmbl_50151,asmbl_50152,asmbl_50155	none	STRG.9262.1,STRG.9262.2,blat.proc3825168.chain_1785,blat.proc3825168.chain_1787,blat.proc3825168.chain_1789,blat.proc3825168.chain_1790,blat.proc3825168.chain_1791	7	blat.proc3825168.chain_1784,blat.proc3825168.chain_1786,blat.proc3825168.chain_1788	3
scaffold_19	retained_intron	12971908	12971989	-	asmbl_22573,asmbl_22574,asmbl_22575,asmbl_22578	none	STRG.22618.1,STRG.22618.2,STRG.22618.3,Trinity_GG_12569_c0_g1_i4,Trinity_GG_12569_c0_g1_i5,Trinity_GG_12569_c0_g1_i6,blat.proc3825158.chain_3361,blat.proc3825158.chain_3363,blat.proc3825158.chain_3364	9	Trinity_GG_12569_c0_g1_i3,blat.proc3825158.chain_3360	2
scaffold_10	alternate_exon	3929710	3930373	-	asmbl_4245	none	blat.proc3825154.chain_802	1	STRG.12235.2,STRG.12235.4,STRG.12235.5,blat.proc3825154.chain_798,blat.proc3825154.chain_800	5
scaffold_7	spliced_intron	1386162	1387009	-	asmbl_50718,asmbl_50725	none	STRG.8652.1,STRG.8652.2,blat.proc3825152.chain_1124	3	blat.proc3825152.chain_1117,blat.proc3825152.chain_1118,blat.proc3825152.chain_1119,blat.proc3825152.chain_1123	4
scaffold_20	skipped_exon	11948483	11948717	-	asmbl_26207,asmbl_26209	none	blat.proc3825160.chain_679,blat.proc3825160.chain_682	2	blat.proc3825160.chain_681	1
scaffold_6	alt_donor	13148553	13148554	-	asmbl_48881	none	STRG.8071.2,Trinity_GG_4591_c0_g1_i1,blat.proc3825152.chain_479	3	STRG.8071.1,Trinity_GG_4591_c0_g1_i2,blat.proc3825152.chain_480	3
scaffold_27	alt_donor	1553631	1553632	+	asmbl_36029,asmbl_36030	none	STRG.28644.2,STRG.28644.3	2	STRG.28644.1,STRG.28644.4,blat.proc3825178.chain_1762	3
scaffold_1	alt_donor	14280621	14280622	+	asmbl_2372	none	STRG.1025.2	1	STRG.1025.1,Trinity_GG_17933_c0_g1_i1,blat.proc3825164.chain_1205	3
scaffold_5	spliced_intron	5622048	5622220	-	asmbl_44051,asmbl_44052,asmbl_44053	none	STRG.5989.1,STRG.5989.2,blat.proc3825150.chain_2200	3	Trinity_GG_3374_c0_g1_i4,blat.proc3825150.chain_2203	2
scaffold_18	starts_in_intron	1862861	1862861	-	asmbl_19651	none	STRG.21074.1	1	STRG.21074.2,STRG.21074.3,blat.proc3825158.chain_1998,blat.proc3825158.chain_1999	4
scaffold_5	alt_acceptor	15766284	15766285	+	asmbl_46014,asmbl_46016,asmbl_46020,asmbl_46022	none	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2923	5	blat.proc3825166.chain_2916,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922	3
scaffold_16	alt_donor	8027307	8027308	-	asmbl_17213,asmbl_17216	none	STRG.19442.1,STRG.19442.2,blat.proc3825158.chain_595	3	Trinity_GG_10921_c0_g2_i1,blat.proc3825158.chain_596	2
scaffold_6	alt_acceptor	594246	594247	-	asmbl_48045	none	STRG.7123.1,blat.proc3825150.chain_3222	2	STRG.7123.2	1
scaffold_2	retained_intron	16414057	16414370	-	asmbl_23689,asmbl_23694	none	STRG.2587.3,blat.proc3825148.chain_2557	2	STRG.2587.1,blat.proc3825148.chain_2556,blat.proc3825148.chain_2558,blat.proc3825148.chain_2559,blat.proc3825148.chain_2560	5
scaffold_10	starts_in_intron	9074189	9074189	+	asmbl_3364	none	blat.proc3825170.chain_1290,blat.proc3825170.chain_1291	2	STRG.12659.1,STRG.12659.2	2
scaffold_12	alt_donor	15265766	15265767	-	asmbl_9065	none	STRG.15338.2	1	STRG.15338.1,STRG.15338.3,STRG.15338.4,Trinity_GG_8603_c0_g1_i1,blat.proc3825156.chain_178,blat.proc3825156.chain_180	6
scaffold_11	alt_acceptor	12904978	12904979	-	asmbl_7105	none	blat.proc3825154.chain_2732	1	STRG.14175.1,STRG.14175.2	2
scaffold_12	retained_exon	12308728	12308781	+	asmbl_7984,asmbl_7986,asmbl_7987	none	STRG.15133.1,STRG.15133.2,STRG.15133.5,blat.proc3825170.chain_3640	4	STRG.15133.4,blat.proc3825170.chain_3641	2
scaffold_16	spliced_intron	6195725	6195800	+	asmbl_16292,asmbl_16293,asmbl_16294	none	STRG.19370.1,STRG.19370.2,blat.proc3825174.chain_258,blat.proc3825174.chain_260,blat.proc3825174.chain_261	5	blat.proc3825174.chain_257	1
scaffold_2	spliced_intron	891608	892306	+	asmbl_24138,asmbl_24139,asmbl_24144,asmbl_24145	none	STRG.1566.2,STRG.1566.4,STRG.1566.5,blat.proc3825164.chain_1726,blat.proc3825164.chain_1731	5	STRG.1566.1,STRG.1566.3,Trinity_GG_18212_c0_g1_i1,Trinity_GG_18212_c0_g1_i2,blat.proc3825164.chain_1723,blat.proc3825164.chain_1724,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730	8
scaffold_21	alt_donor	7461614	7461615	-	asmbl_27819	none	STRG.24277.2,blat.proc3825160.chain_1356	2	STRG.24277.1	1
scaffold_2	retained_intron	15266137	15266197	+	asmbl_24997,asmbl_25002,asmbl_25004,asmbl_25005,asmbl_25006	none	STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2602,blat.proc3825164.chain_2606,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	6	STRG.2485.1,blat.proc3825164.chain_2601,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2607	6
scaffold_8	spliced_intron	9872527	9872652	-	asmbl_52058	none	STRG.10234.1,blat.proc3825152.chain_2490	2	blat.proc3825152.chain_2491	1
scaffold_2	ends_in_intron	18953932	18953932	+	asmbl_25252,asmbl_25253	none	blat.proc3825164.chain_2976,blat.proc3825164.chain_2977	2	STRG.2769.3	1
scaffold_7	alt_donor	15270861	15270862	+	asmbl_50428,asmbl_50430,asmbl_50431,asmbl_50433	none	STRG.9546.1,STRG.9546.3,blat.proc3825168.chain_2122,blat.proc3825168.chain_2125	4	STRG.9546.4,blat.proc3825168.chain_2120,blat.proc3825168.chain_2123	3
scaffold_6	spliced_intron	17672463	17672607	+	asmbl_47771,asmbl_47776,asmbl_47777	none	STRG.8462.1,STRG.8462.2,Trinity_GG_21933_c0_g1_i5,blat.proc3825168.chain_866,blat.proc3825168.chain_869	5	STRG.8462.3,Trinity_GG_21933_c0_g1_i2,Trinity_GG_21933_c0_g1_i6,Trinity_GG_21933_c0_g1_i7,blat.proc3825168.chain_865,blat.proc3825168.chain_867,blat.proc3825168.chain_868,blat.proc3825168.chain_871	8
scaffold_9	starts_in_intron	16384854	16384854	+	asmbl_54595	none	Trinity_GG_23888_c0_g1_i4,blat.proc3825170.chain_586	2	STRG.11792.1,STRG.11792.2,blat.proc3825170.chain_587	3
scaffold_10	starts_in_intron	13280658	13280658	-	asmbl_4868	none	blat.proc3825154.chain_1551	1	STRG.12922.1,STRG.12922.2,STRG.12922.3,STRG.12922.4,blat.proc3825154.chain_1549,blat.proc3825154.chain_1550	6
scaffold_2	starts_in_intron	16472300	16472300	-	asmbl_23697	none	blat.proc3825148.chain_2542	1	STRG.2586.1,blat.proc3825148.chain_2541,blat.proc3825148.chain_2543	3
scaffold_16	alt_acceptor	5804960	5804961	+	asmbl_16229	none	STRG.19326.3	1	STRG.19326.1,Trinity_GG_27849_c0_g1_i1,Trinity_GG_27849_c0_g1_i4,blat.proc3825174.chain_148,blat.proc3825174.chain_150	5
scaffold_25	alt_acceptor	3627663	3627664	+	asmbl_33437,asmbl_33438	none	STRG.27312.2,STRG.27312.3,blat.proc3825178.chain_429	3	STRG.27312.1,blat.proc3825178.chain_426,blat.proc3825178.chain_427	3
scaffold_28	alt_donor	5611352	5611353	-	asmbl_38304	none	STRG.29697.2	1	STRG.29697.3,Trinity_GG_16664_c0_g1_i8,blat.proc3825162.chain_2902	3
scaffold_18	starts_in_intron	238101	238101	-	asmbl_19570	none	STRG.20979.3	1	STRG.20979.1,STRG.20979.2,blat.proc3825158.chain_1923,blat.proc3825158.chain_1925	4
scaffold_20	starts_in_intron	10673009	10673009	+	asmbl_26979	none	STRG.23604.3	1	STRG.23604.1,STRG.23604.2,blat.proc3825176.chain_785,blat.proc3825176.chain_786	4
scaffold_5	alt_donor	3914517	3914518	+	asmbl_45254	none	STRG.5862.2	1	STRG.5862.1,blat.proc3825166.chain_2094	2
scaffold_19	starts_in_intron	10637344	10637344	-	asmbl_22351	none	STRG.22413.2	1	STRG.22413.1,blat.proc3825158.chain_3119	2
scaffold_18	alt_acceptor	7875915	7875916	+	asmbl_20813,asmbl_20814	none	STRG.21491.2,blat.proc3825174.chain_2469,blat.proc3825174.chain_2471	3	STRG.21491.1,STRG.21491.3,STRG.21491.4,STRG.21491.5,blat.proc3825174.chain_2468,blat.proc3825174.chain_2470,blat.proc3825174.chain_2472	7
scaffold_16	starts_in_intron	125087	125087	+	asmbl_16000,asmbl_16001	none	STRG.19007.3,STRG.19007.4	2	STRG.19007.1,STRG.19007.2,Trinity_GG_27742_c0_g1_i2,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3683,blat.proc3825172.chain_3685	6
scaffold_7	starts_in_intron	1230858	1230858	+	asmbl_49588,asmbl_49589	none	Trinity_GG_22033_c4_g1_i1,blat.proc3825168.chain_1084	2	STRG.8637.7,Trinity_GG_22033_c0_g1_i16,blat.proc3825168.chain_1080	3
scaffold_5	alt_donor	18222688	18222689	+	asmbl_46219,asmbl_46222	none	STRG.6959.1,STRG.6959.5,blat.proc3825166.chain_3166	3	STRG.6959.2,STRG.6959.3,STRG.6959.4,blat.proc3825166.chain_3167	4
scaffold_19	retained_exon	12107239	12107337	-	asmbl_22456,asmbl_22457	none	STRG.22539.1,STRG.22539.5,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	4	STRG.22539.4	1
scaffold_21	alt_acceptor	7387549	7387550	+	asmbl_28730	none	STRG.24265.2,blat.proc3825176.chain_1412	2	STRG.24265.1	1
scaffold_8	alternate_exon	8180689	8183484	+	asmbl_53004,asmbl_53005,asmbl_53006,asmbl_53007	none	STRG.10103.1,STRG.10103.2,STRG.10103.3,STRG.10103.4,Trinity_GG_22947_c1_g1_i1,Trinity_GG_22947_c4_g1_i1,blat.proc3825168.chain_2696,blat.proc3825168.chain_2700	8	blat.proc3825168.chain_2698	1
scaffold_25	retained_intron	9554175	9556117	+	asmbl_33831,asmbl_33832	none	STRG.27772.3,blat.proc3825178.chain_814	2	STRG.27772.1,blat.proc3825178.chain_811	2
scaffold_17	alt_donor	7038408	7038409	-	asmbl_18027	none	STRG.20368.2	1	STRG.20368.1,blat.proc3825158.chain_1345	2
scaffold_7	ends_in_intron	1390386	1390386	-	asmbl_50720	none	Trinity_GG_4935_c2_g1_i1,blat.proc3825152.chain_1126	2	STRG.8652.1,blat.proc3825152.chain_1117,blat.proc3825152.chain_1118,blat.proc3825152.chain_1124	4
scaffold_18	spliced_intron	4571830	4572199	+	asmbl_20531,asmbl_20532,asmbl_20535	none	STRG.21248.1,STRG.21248.2,blat.proc3825174.chain_2217,blat.proc3825174.chain_2218,blat.proc3825174.chain_2219	5	blat.proc3825174.chain_2216	1
scaffold_4	alt_acceptor	13415771	13415772	+	asmbl_41788,asmbl_41791	none	STRG.4977.1,blat.proc3825166.chain_1334,blat.proc3825166.chain_1336	3	STRG.4977.2,STRG.4977.3	2
scaffold_20	spliced_intron	7206140	7206288	-	asmbl_25889	none	STRG.23288.1,blat.proc3825160.chain_347	2	STRG.23288.2,blat.proc3825160.chain_346	2
scaffold_26	starts_in_intron	4434450	4434450	+	asmbl_34898	none	Trinity_GG_32866_c1_g1_i1,blat.proc3825178.chain_1254	2	STRG.28150.1,blat.proc3825178.chain_1255	2
scaffold_26	alt_donor	2942384	2942385	-	asmbl_35455	none	STRG.27981.3	1	STRG.27981.1,STRG.27981.2	2
scaffold_10	alternate_exon	1489827	1492523	-	asmbl_4063	none	STRG.12025.1,blat.proc3825154.chain_513	2	Trinity_GG_6656_c0_g1_i6,blat.proc3825154.chain_516	2
scaffold_23	alt_donor	5583876	5583877	+	asmbl_31587	none	STRG.25931.3,blat.proc3825176.chain_2800	2	STRG.25931.1,STRG.25931.2,Trinity_GG_31582_c0_g1_i1,blat.proc3825176.chain_2802	4
scaffold_19	retained_intron	12574951	12575421	-	asmbl_22519	none	blat.proc3825158.chain_3374	1	STRG.22584.1,STRG.22584.2,blat.proc3825158.chain_3373	3
scaffold_10	alt_donor	17349841	17349842	-	asmbl_5056	none	blat.proc3825154.chain_1786	1	blat.proc3825154.chain_1785	1
scaffold_21	alt_donor	3015237	3015238	+	asmbl_28434	none	STRG.23928.1,blat.proc3825176.chain_1106	2	STRG.23928.2,blat.proc3825176.chain_1102,blat.proc3825176.chain_1103,blat.proc3825176.chain_1105	4
scaffold_16	ends_in_intron	1805094	1805094	+	asmbl_16100	none	blat.proc3825174.chain_14	1	STRG.19107.1,blat.proc3825174.chain_15	2
scaffold_11	starts_in_intron	16955672	16955672	+	asmbl_6182	none	Trinity_GG_25229_c0_g1_i1,blat.proc3825170.chain_2906	2	STRG.14362.1	1
scaffold_6	ends_in_intron	17831465	17831465	+	asmbl_47789	none	STRG.8472.1	1	STRG.8472.2,Trinity_GG_34007_c0_g1_i1,blat.proc3825168.chain_937	3
scaffold_4	ends_in_intron	19600456	19600456	-	asmbl_43464,asmbl_43466	none	STRG.5546.2,Trinity_GG_3118_c0_g1_i1,blat.proc3825150.chain_1738	3	STRG.5546.1	1
scaffold_27	alt_donor	6258961	6258962	+	asmbl_36396	none	blat.proc3825178.chain_2191	1	STRG.29016.2,STRG.29016.3,blat.proc3825178.chain_2193,blat.proc3825178.chain_2194	4
scaffold_6	spliced_intron	13657677	13658201	-	asmbl_48928	none	STRG.8106.3,blat.proc3825152.chain_526	2	STRG.8106.1,blat.proc3825152.chain_524	2
scaffold_14	retained_exon	10019063	10019103	-	asmbl_13407	none	STRG.17375.3,blat.proc3825156.chain_2151	2	STRG.17375.2,blat.proc3825156.chain_2152	2
scaffold_6	ends_in_intron	10376176	10376176	-	asmbl_48693	none	blat.proc3825152.chain_264	1	STRG.7873.1,Trinity_GG_4461_c0_g1_i3,blat.proc3825152.chain_263,blat.proc3825152.chain_265	4
scaffold_11	retained_intron	932741	932796	+	asmbl_5315	none	STRG.13291.1,blat.proc3825170.chain_1780	2	STRG.13291.2	1
scaffold_2	starts_in_intron	15942920	15942920	+	asmbl_25089	none	Trinity_GG_18723_c0_g1_i2,blat.proc3825164.chain_2759	2	STRG.2540.1,Trinity_GG_18723_c0_g1_i1,blat.proc3825164.chain_2758	3
scaffold_24	alt_acceptor	9679643	9679644	+	asmbl_32530	none	STRG.26956.1	1	blat.proc3825178.chain_167	1
scaffold_5	alt_donor	15893594	15893595	+	asmbl_46031	none	STRG.6778.4	1	STRG.6778.2,STRG.6778.3,blat.proc3825166.chain_2866,blat.proc3825166.chain_2867	4
scaffold_24	alt_donor	6841917	6841918	+	asmbl_32355	none	STRG.26735.2,Trinity_GG_32099_c0_g1_i2,blat.proc3825176.chain_3703	3	STRG.26735.1,Trinity_GG_32099_c0_g1_i1,blat.proc3825176.chain_3704	3
scaffold_21	starts_in_intron	7493564	7493564	+	asmbl_28743	none	Trinity_GG_30765_c1_g1_i1	1	STRG.24280.1,blat.proc3825176.chain_1495	2
scaffold_6	starts_in_intron	14132782	14132782	+	asmbl_47585	none	blat.proc3825168.chain_666	1	STRG.8176.1,STRG.8176.2,blat.proc3825168.chain_667	3
scaffold_21	ends_in_intron	1276025	1276025	-	asmbl_27399	none	Trinity_GG_13283_c2_g1_i1,blat.proc3825160.chain_958	2	STRG.23803.1,Trinity_GG_13283_c1_g1_i2,Trinity_GG_13283_c1_g1_i4,blat.proc3825160.chain_956,blat.proc3825160.chain_957	5
scaffold_25	retained_exon	6438069	6438181	+	asmbl_33629	none	STRG.27528.1,blat.proc3825178.chain_616	2	STRG.27528.3	1
scaffold_19	alternate_exon	12134528	12134607	+	asmbl_21756	none	STRG.22544.2,Trinity_GG_29790_c1_g1_i5,blat.proc3825174.chain_3582	3	STRG.22544.1,Trinity_GG_29790_c1_g1_i2,blat.proc3825174.chain_3580	3
scaffold_8	spliced_intron	6028315	6028414	+	asmbl_52924,asmbl_52926,asmbl_52927,asmbl_52929	none	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2613	4	blat.proc3825168.chain_2614	1
scaffold_6	ends_in_intron	8645179	8645179	-	asmbl_48580	none	blat.proc3825152.chain_122	1	STRG.7755.1,blat.proc3825152.chain_121	2
scaffold_6	alt_acceptor	2681757	2681758	-	asmbl_48144	none	STRG.7261.1,blat.proc3825150.chain_3375	2	STRG.7261.2	1
scaffold_27	retained_intron	313987	314158	-	asmbl_36657	none	STRG.28557.2,Trinity_GG_15948_c0_g1_i7	2	STRG.28557.1,STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1728	5
scaffold_4	spliced_intron	4094067	4094177	+	asmbl_41217,asmbl_41218,asmbl_41219,asmbl_41220,asmbl_41224,asmbl_41228	none	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,STRG.4315.5,Trinity_GG_19675_c0_g1_i17,blat.proc3825166.chain_704,blat.proc3825166.chain_707,blat.proc3825166.chain_708	9	Trinity_GG_19675_c0_g1_i16,blat.proc3825166.chain_701,blat.proc3825166.chain_711	3
scaffold_4	alt_donor	5231465	5231466	-	asmbl_42574	none	STRG.4416.2,blat.proc3825150.chain_648	2	STRG.4416.3,STRG.4416.4,STRG.4416.5,blat.proc3825150.chain_649	4
scaffold_8	retained_intron	18162712	18162884	-	asmbl_52515,asmbl_52516	none	Trinity_GG_5967_c0_g1_i4,blat.proc3825152.chain_2997,blat.proc3825152.chain_2999	3	STRG.10730.1,Trinity_GG_5967_c0_g1_i3,Trinity_GG_5967_c0_g1_i5,blat.proc3825152.chain_2998,blat.proc3825152.chain_3000,blat.proc3825152.chain_3001	6
scaffold_10	spliced_intron	12069498	12070132	+	asmbl_3526	none	STRG.12844.2,blat.proc3825170.chain_1371	2	STRG.12844.1,blat.proc3825170.chain_1370	2
scaffold_28	spliced_intron	7359508	7359739	+	asmbl_37666	none	STRG.29807.1,Trinity_GG_33819_c0_g1_i3,blat.proc3825178.chain_2956	3	Trinity_GG_33819_c0_g1_i6,blat.proc3825178.chain_2955	2
scaffold_4	spliced_intron	18033877	18033924	-	asmbl_43341	none	STRG.5403.1	1	STRG.5403.2	1
scaffold_3	alternate_exon	6247494	6256998	-	asmbl_38932,asmbl_38933,asmbl_38934	none	STRG.3271.2,STRG.3271.5,STRG.3271.6,Trinity_GG_1776_c4_g1_i1,blat.proc3825148.chain_3139,blat.proc3825148.chain_3141,blat.proc3825148.chain_3143,blat.proc3825148.chain_3144,blat.proc3825148.chain_3148	9	STRG.3271.1,STRG.3271.4,blat.proc3825148.chain_3136,blat.proc3825148.chain_3140	4
scaffold_13	skipped_exon	4601442	4602712	-	asmbl_9646,asmbl_9648	none	Trinity_GG_8874_c0_g1_i6,blat.proc3825156.chain_666,blat.proc3825156.chain_673	3	STRG.15796.1,Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665	3
scaffold_18	ends_in_intron	3580245	3580245	+	asmbl_20457	none	blat.proc3825174.chain_2106	1	STRG.21174.1,Trinity_GG_28960_c0_g1_i1,blat.proc3825174.chain_2105	3
scaffold_5	starts_in_intron	7028729	7028729	+	asmbl_45475	none	blat.proc3825166.chain_2374	1	STRG.6116.1,STRG.6116.2	2
scaffold_18	spliced_intron	8726290	8726425	+	asmbl_20857,asmbl_20858,asmbl_20859,asmbl_20862,asmbl_20863	none	STRG.21537.1,STRG.21537.2,STRG.21537.3,blat.proc3825174.chain_2616,blat.proc3825174.chain_2617,blat.proc3825174.chain_2618,blat.proc3825174.chain_2619,blat.proc3825174.chain_2620	8	Trinity_GG_29235_c0_g1_i3,blat.proc3825174.chain_2615,blat.proc3825174.chain_2621	3
scaffold_2	retained_intron	11610034	11610204	+	asmbl_24758,asmbl_24759	none	STRG.2268.1,blat.proc3825164.chain_2376,blat.proc3825164.chain_2379,blat.proc3825164.chain_2381,blat.proc3825164.chain_2382	5	STRG.2268.2,blat.proc3825164.chain_2378,blat.proc3825164.chain_2380	3
scaffold_6	starts_in_intron	11011719	11011719	-	asmbl_48728	none	STRG.7916.1,blat.proc3825152.chain_321	2	STRG.7916.2,STRG.7916.3,STRG.7916.4,blat.proc3825152.chain_319	4
scaffold_22	retained_intron	4220495	4220866	-	asmbl_29223,asmbl_29225,asmbl_29226	none	blat.proc3825160.chain_2069,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078	3	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2079	7
scaffold_15	alternate_exon	1683324	1684105	+	asmbl_15025	none	STRG.17972.1,Trinity_GG_27196_c1_g1_i1,blat.proc3825172.chain_2694	3	STRG.17972.2	1
scaffold_16	alt_donor	8589716	8589717	+	asmbl_16419,asmbl_16421,asmbl_16422	none	STRG.19490.2,STRG.19490.7,blat.proc3825174.chain_375	3	STRG.19490.1,STRG.19490.3,blat.proc3825174.chain_372,blat.proc3825174.chain_373	4
scaffold_18	retained_intron	1382022	1382102	-	asmbl_19615	none	blat.proc3825158.chain_1983	1	STRG.21024.1,STRG.21024.2,blat.proc3825158.chain_1981,blat.proc3825158.chain_1982	4
scaffold_13	alt_donor	3996824	3996825	-	asmbl_9602	none	blat.proc3825156.chain_608	1	STRG.15726.1,blat.proc3825156.chain_606,blat.proc3825156.chain_607	3
scaffold_9	alternate_exon	4830598	4830647	-	asmbl_54977	none	STRG.11059.2	1	STRG.11059.1,blat.proc3825152.chain_3305	2
scaffold_16	starts_in_intron	5496781	5496781	-	asmbl_17115	none	Trinity_GG_10847_c0_g1_i1,blat.proc3825158.chain_451	2	STRG.19308.1,Trinity_GG_10847_c0_g1_i2,blat.proc3825158.chain_450	3
scaffold_23	skipped_exon	8102387	8103421	+	asmbl_31759	none	STRG.26124.2	1	STRG.26124.1	1
scaffold_8	alt_donor	9167841	9167842	-	asmbl_52018,asmbl_52019	none	STRG.10185.2,STRG.10185.3	2	STRG.10185.1,STRG.10185.4,blat.proc3825152.chain_2350	3
scaffold_6	retained_intron	13988163	13988265	-	asmbl_48970	none	STRG.8159.1,blat.proc3825152.chain_614	2	blat.proc3825152.chain_615	1
scaffold_16	retained_intron	14510356	14510447	-	asmbl_17450	none	Trinity_GG_11122_c0_g1_i1,blat.proc3825158.chain_876	2	STRG.19830.1,Trinity_GG_11122_c0_g1_i3,blat.proc3825158.chain_872,blat.proc3825158.chain_874,blat.proc3825158.chain_875,blat.proc3825158.chain_877,blat.proc3825158.chain_878	7
scaffold_20	alt_donor	2364720	2364721	+	asmbl_26483	none	STRG.22969.2	1	STRG.22969.1	1
scaffold_1	starts_in_intron	7374812	7374812	-	asmbl_433	none	STRG.528.5,blat.proc3825148.chain_514	2	STRG.528.2,STRG.528.3,STRG.528.4,blat.proc3825148.chain_512	4
scaffold_8	starts_in_intron	4895614	4895614	+	asmbl_52880	none	STRG.9956.3	1	STRG.9956.1,STRG.9956.2,blat.proc3825168.chain_2415,blat.proc3825168.chain_2416,blat.proc3825168.chain_2417	5
scaffold_21	spliced_intron	1697777	1697954	+	asmbl_28355,asmbl_28356,asmbl_28357	none	STRG.23822.1,Trinity_GG_30533_c0_g1_i3,blat.proc3825176.chain_1071,blat.proc3825176.chain_1072,blat.proc3825176.chain_1074	5	blat.proc3825176.chain_1073	1
scaffold_9	retained_intron	16568288	16568413	+	asmbl_54601,asmbl_54605	none	STRG.11807.2,Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_614	3	STRG.11807.1,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i21,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_610,blat.proc3825170.chain_612,blat.proc3825170.chain_613,blat.proc3825170.chain_616,blat.proc3825170.chain_617	11
scaffold_28	alt_donor	7189708	7189709	-	asmbl_38381	none	STRG.29778.2	1	STRG.29778.1,blat.proc3825162.chain_2968	2
scaffold_8	starts_in_intron	17495543	17495543	+	asmbl_53484,asmbl_53485	none	STRG.10682.5,Trinity_GG_23212_c0_g1_i1,blat.proc3825168.chain_3149	3	STRG.10682.1,STRG.10682.3,blat.proc3825168.chain_3150,blat.proc3825168.chain_3151,blat.proc3825168.chain_3152,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	7
scaffold_14	retained_intron	1069783	1069875	+	asmbl_11795	none	blat.proc3825172.chain_1533	1	STRG.16766.1,STRG.16766.2,blat.proc3825172.chain_1535,blat.proc3825172.chain_1537	4
scaffold_6	spliced_intron	298817	299335	+	asmbl_46650	none	STRG.7091.4,Trinity_GG_21228_c0_g1_i1,blat.proc3825166.chain_3316	3	STRG.7091.1,Trinity_GG_21228_c0_g1_i2,blat.proc3825166.chain_3319	3
scaffold_6	skipped_exon	3320407	3320929	-	asmbl_48247	none	STRG.7338.4,blat.proc3825150.chain_3425	2	STRG.7338.1,STRG.7338.3	2
scaffold_22	retained_intron	1707174	1707269	-	asmbl_29148	none	STRG.24761.2,Trinity_GG_13841_c0_g1_i1,blat.proc3825160.chain_1959	3	STRG.24761.1,Trinity_GG_13841_c0_g1_i3,blat.proc3825160.chain_1958	3
scaffold_17	spliced_intron	8321556	8321624	+	asmbl_18974	none	STRG.20452.1,blat.proc3825174.chain_1233	2	blat.proc3825174.chain_1234	1
scaffold_15	retained_intron	4492518	4492646	+	asmbl_15145	none	blat.proc3825172.chain_2858	1	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2857	8
scaffold_7	spliced_intron	10543036	10543134	+	asmbl_50129	none	STRG.9230.1,blat.proc3825168.chain_1719	2	blat.proc3825168.chain_1718	1
scaffold_12	starts_in_intron	9236767	9236767	+	asmbl_7860	none	STRG.14940.2,blat.proc3825170.chain_3512	2	STRG.14940.1	1
scaffold_9	ends_in_intron	4957201	4957201	-	asmbl_54983	none	Trinity_GG_6141_c3_g1_i1,blat.proc3825152.chain_3314	2	STRG.11068.1,blat.proc3825152.chain_3311	2
scaffold_25	ends_in_intron	3827864	3827864	-	asmbl_34165	none	Trinity_GG_15316_c0_g1_i1,blat.proc3825162.chain_691	2	STRG.27340.2,Trinity_GG_15316_c0_g1_i2,blat.proc3825162.chain_690	3
scaffold_1	retained_intron	4619268	4619989	+	asmbl_1684,asmbl_1685,asmbl_1686	none	STRG.295.1,STRG.295.2,STRG.295.4,blat.proc3825164.chain_449	4	STRG.295.3	1
scaffold_28	alternate_exon	2267847	2271088	-	asmbl_38023	none	STRG.29401.1,blat.proc3825162.chain_2578	2	blat.proc3825162.chain_2576	1
scaffold_20	retained_exon	10671489	10671530	+	asmbl_26980,asmbl_26982	none	STRG.23604.1,blat.proc3825176.chain_785,blat.proc3825176.chain_786	3	STRG.23604.2	1
scaffold_27	spliced_intron	6702554	6703059	-	asmbl_37078	none	STRG.29041.2	1	STRG.29041.1,blat.proc3825162.chain_2271	2
scaffold_6	spliced_intron	3799951	3800050	+	asmbl_46858,asmbl_46859	none	STRG.7378.1,STRG.7378.2,blat.proc3825166.chain_3632,blat.proc3825166.chain_3633	4	blat.proc3825166.chain_3634	1
scaffold_18	spliced_intron	7864869	7866281	-	asmbl_19981	none	STRG.21486.2,blat.proc3825158.chain_2405	2	blat.proc3825158.chain_2407	1
scaffold_6	alternate_exon	13273017	13273059	+	asmbl_47513,asmbl_47514	none	STRG.8090.4,STRG.8090.5,blat.proc3825168.chain_517,blat.proc3825168.chain_518	4	STRG.8090.2,STRG.8090.3	2
scaffold_4	spliced_intron	3237335	3238369	-	asmbl_42424	none	STRG.4249.4	1	Trinity_GG_2372_c0_g1_i5,Trinity_GG_2372_c0_g1_i7,blat.proc3825150.chain_492,blat.proc3825150.chain_494	4
scaffold_9	ends_in_intron	16387303	16387303	+	asmbl_54593	none	STRG.11792.2	1	STRG.11792.1,Trinity_GG_23888_c0_g1_i4,blat.proc3825170.chain_586,blat.proc3825170.chain_587	4
scaffold_3	retained_intron	16072508	16072625	+	asmbl_40606	none	blat.proc3825166.chain_375	1	STRG.3889.3	1
scaffold_11	alt_acceptor	2283134	2283135	-	asmbl_6491	none	STRG.13385.2	1	STRG.13385.1,blat.proc3825154.chain_1969	2
scaffold_11	retained_intron	8719314	8719523	-	asmbl_6872	none	Trinity_GG_7765_c0_g1_i7,blat.proc3825154.chain_2438	2	Trinity_GG_7765_c0_g1_i2,blat.proc3825154.chain_2440	2
scaffold_20	alt_acceptor	12095666	12095667	-	asmbl_26222	none	STRG.23707.2,blat.proc3825160.chain_788	2	STRG.23707.1	1
scaffold_2	spliced_intron	14221018	14221150	-	asmbl_23583,asmbl_23584	none	blat.proc3825148.chain_2357,blat.proc3825148.chain_2358	2	STRG.2418.2,blat.proc3825148.chain_2354,blat.proc3825148.chain_2355	3
scaffold_15	skipped_exon	7181904	7183428	-	asmbl_14277,asmbl_14278	none	STRG.18310.1,STRG.18310.4,blat.proc3825156.chain_3040,blat.proc3825156.chain_3041	4	STRG.18310.2,blat.proc3825156.chain_3043	2
scaffold_13	retained_intron	6396106	6396589	+	asmbl_10926,asmbl_10928	none	STRG.15929.1,Trinity_GG_26055_c0_g1_i4,blat.proc3825172.chain_654	3	STRG.15929.3,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	4
scaffold_8	alt_acceptor	4340616	4340617	+	asmbl_52837	none	STRG.9915.3,blat.proc3825168.chain_2490	2	STRG.9915.1,blat.proc3825168.chain_2487	2
scaffold_28	retained_intron	232681	232757	+	asmbl_37256	none	blat.proc3825178.chain_2485	1	STRG.29253.1,STRG.29253.2,blat.proc3825178.chain_2480,blat.proc3825178.chain_2481,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483	6
scaffold_13	starts_in_intron	6852136	6852136	+	asmbl_10987	none	blat.proc3825172.chain_632	1	STRG.15976.1,blat.proc3825172.chain_630	2
scaffold_21	alternate_exon	5516228	5518490	-	asmbl_27662	none	STRG.24083.3,Trinity_GG_13443_c0_g1_i1,blat.proc3825160.chain_1260	3	blat.proc3825160.chain_1261	1
scaffold_2	alternate_exon	14279466	14281153	+	asmbl_24897,asmbl_24898,asmbl_24899,asmbl_24900,asmbl_24901,asmbl_24902	none	STRG.2428.1,STRG.2428.2,STRG.2428.3,STRG.2428.4,Trinity_GG_18676_c0_g1_i1,blat.proc3825164.chain_2593,blat.proc3825164.chain_2596,blat.proc3825164.chain_2670	8	blat.proc3825164.chain_2594	1
scaffold_17	ends_in_intron	4085962	4085962	+	asmbl_18770	none	Trinity_GG_28365_c0_g1_i2,blat.proc3825174.chain_1042	2	STRG.20169.1,Trinity_GG_28365_c0_g1_i1,blat.proc3825174.chain_1043	3
scaffold_12	starts_in_intron	10020567	10020567	-	asmbl_8719	none	blat.proc3825154.chain_3428	1	STRG.14978.1,blat.proc3825154.chain_3427	2
scaffold_8	spliced_intron	16501928	16502016	-	asmbl_52403,asmbl_52404,asmbl_52411,asmbl_52413,asmbl_52414,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52419,asmbl_52420,asmbl_52421,asmbl_52422	none	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2928,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939,blat.proc3825152.chain_2941	14	Trinity_GG_5934_c0_g1_i14,blat.proc3825152.chain_2927	2
scaffold_17	ends_in_intron	9179399	9179399	+	asmbl_19065	none	Trinity_GG_28554_c0_g1_i1,blat.proc3825174.chain_1377	2	STRG.20543.1,blat.proc3825174.chain_1378	2
scaffold_3	retained_intron	6658263	6658355	+	asmbl_40103,asmbl_40104,asmbl_40105,asmbl_40106,asmbl_40107,asmbl_40108,asmbl_40112,asmbl_40113	none	STRG.3295.1,STRG.3295.3,Trinity_GG_19180_c0_g1_i15,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3562,blat.proc3825164.chain_3564,blat.proc3825164.chain_3566,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	11	STRG.3295.2,STRG.3295.4,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565,blat.proc3825164.chain_3567	7
scaffold_5	skipped_exon	11638405	11639829	+	asmbl_45754	none	STRG.6424.1,Trinity_GG_20751_c0_g1_i1,blat.proc3825166.chain_2518	3	STRG.6424.2,STRG.6424.3,Trinity_GG_20751_c0_g1_i2,Trinity_GG_20751_c0_g1_i3,blat.proc3825166.chain_2517,blat.proc3825166.chain_2519	6
scaffold_20	ends_in_intron	11940011	11940011	-	asmbl_26202	none	STRG.23697.1,Trinity_GG_13191_c0_g1_i1,blat.proc3825160.chain_774	3	blat.proc3825160.chain_778	1
scaffold_14	alt_acceptor	583721	583722	+	asmbl_11769	none	Trinity_GG_26527_c0_g1_i1,blat.proc3825172.chain_1519	2	STRG.16740.2,STRG.16740.3	2
scaffold_16	retained_intron	3564452	3564605	-	asmbl_16984,asmbl_16985	none	STRG.19171.1,blat.proc3825158.chain_300,blat.proc3825158.chain_301	3	STRG.19171.2,blat.proc3825158.chain_302	2
scaffold_2	spliced_intron	16414060	16414370	-	asmbl_23692	none	STRG.2587.2	1	STRG.2587.3,blat.proc3825148.chain_2557	2
scaffold_21	starts_in_intron	2628490	2628490	+	asmbl_28417	none	Trinity_GG_30559_c0_g1_i3,blat.proc3825176.chain_1119	2	STRG.23898.1,blat.proc3825176.chain_1118	2
scaffold_4	alternate_exon	7146110	7146244	+	asmbl_41465,asmbl_41466,asmbl_41467,asmbl_41468,asmbl_41469,asmbl_41470	none	STRG.4559.1,STRG.4559.2,STRG.4559.3,STRG.4559.4,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	6	STRG.4559.5	1
scaffold_22	retained_exon	5985018	5985087	-	asmbl_29301	none	STRG.24948.3	1	STRG.24948.2	1
scaffold_9	spliced_intron	16575074	16575191	+	asmbl_54608	none	STRG.11800.3	1	STRG.11800.1,blat.proc3825170.chain_594	2
scaffold_10	ends_in_intron	5202056	5202056	-	asmbl_4348	none	blat.proc3825154.chain_911	1	STRG.12347.1,STRG.12347.2,blat.proc3825154.chain_912,blat.proc3825154.chain_913,blat.proc3825154.chain_914	5
scaffold_4	starts_in_intron	19522284	19522284	-	asmbl_43445	none	Trinity_GG_3063_c0_g1_i1,blat.proc3825150.chain_1645	2	STRG.5538.1,blat.proc3825150.chain_1642,blat.proc3825150.chain_1643,blat.proc3825150.chain_1644	4
scaffold_2	retained_intron	18964556	18964833	+	asmbl_25257	none	Trinity_GG_18867_c0_g1_i2,blat.proc3825164.chain_3015	2	STRG.2768.1,blat.proc3825164.chain_3016	2
scaffold_3	alternate_exon	15800142	15800199	+	asmbl_40578	none	STRG.3857.1,Trinity_GG_19475_c0_g1_i1,blat.proc3825166.chain_354	3	STRG.3857.2	1
scaffold_6	retained_intron	10897965	10898174	+	asmbl_47307	none	Trinity_GG_21655_c0_g1_i2,blat.proc3825168.chain_378	2	STRG.7907.1,STRG.7907.2,STRG.7907.3,blat.proc3825168.chain_379,blat.proc3825168.chain_382	5
scaffold_5	starts_in_intron	19028774	19028774	-	asmbl_44893	none	blat.proc3825150.chain_3132	1	STRG.7022.1,STRG.7022.2,STRG.7022.3,STRG.7022.4,STRG.7022.5,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133,blat.proc3825150.chain_3134	8
scaffold_5	retained_intron	2536271	2536552	+	asmbl_45172	none	STRG.5779.2,blat.proc3825166.chain_2004	2	STRG.5779.1,STRG.5779.4,blat.proc3825166.chain_2003,blat.proc3825166.chain_2005	4
scaffold_2	spliced_intron	17014420	17014564	-	asmbl_23708	none	STRG.2614.1,blat.proc3825148.chain_2525	2	STRG.2614.2,Trinity_GG_1405_c0_g1_i2,blat.proc3825148.chain_2526	3
scaffold_25	spliced_intron	5157955	5158103	-	asmbl_34244,asmbl_34246,asmbl_34249,asmbl_34250	none	STRG.27443.1,STRG.27443.2,STRG.27443.3,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809	6	blat.proc3825162.chain_805	1
scaffold_2	alternate_exon	4018647	4018803	-	asmbl_23038	none	STRG.1846.2	1	STRG.1846.1,blat.proc3825148.chain_1815	2
scaffold_14	retained_intron	13223723	13223984	+	asmbl_12466,asmbl_12467,asmbl_12468	none	STRG.17622.3,blat.proc3825172.chain_2332,blat.proc3825172.chain_2335	3	STRG.17622.1,STRG.17622.2,STRG.17622.4,blat.proc3825172.chain_2329,blat.proc3825172.chain_2330	5
scaffold_23	ends_in_intron	7876028	7876028	-	asmbl_31052	none	blat.proc3825160.chain_3267	1	STRG.26094.2,blat.proc3825160.chain_3269	2
scaffold_10	starts_in_intron	9500965	9500965	+	asmbl_3393	none	Trinity_GG_24280_c0_g1_i1,Trinity_GG_24280_c0_g1_i5,blat.proc3825170.chain_1245,blat.proc3825170.chain_1246	4	STRG.12697.1,blat.proc3825170.chain_1248	2
scaffold_23	alternate_exon	7656286	7656401	+	asmbl_31707	none	blat.proc3825176.chain_2989	1	blat.proc3825176.chain_2988,blat.proc3825176.chain_2990	2
scaffold_4	spliced_intron	5651885	5652054	-	asmbl_42617	none	Trinity_GG_2475_c0_g1_i10,blat.proc3825150.chain_657,blat.proc3825150.chain_661	3	STRG.4472.3,blat.proc3825150.chain_658,blat.proc3825150.chain_659,blat.proc3825150.chain_663,blat.proc3825150.chain_664	5
scaffold_2	alt_donor	14015546	14015547	+	asmbl_24865	none	STRG.2396.1,blat.proc3825164.chain_2571	2	STRG.2396.3,blat.proc3825164.chain_2573	2
scaffold_21	alt_acceptor	6558914	6558915	-	asmbl_27731	none	STRG.24179.1	1	Trinity_GG_13482_c0_g1_i1,blat.proc3825160.chain_1319	2
scaffold_26	spliced_intron	9083573	9083738	-	asmbl_35767	none	STRG.28473.3	1	STRG.28473.1,blat.proc3825162.chain_1682	2
scaffold_25	alt_donor	9550383	9550384	+	asmbl_33832	none	STRG.27772.3	1	STRG.27772.1,blat.proc3825178.chain_811,blat.proc3825178.chain_814	3
scaffold_17	alt_acceptor	8808754	8808755	-	asmbl_18117	none	STRG.20490.1,blat.proc3825158.chain_1440	2	STRG.20490.2,blat.proc3825158.chain_1441	2
scaffold_6	skipped_exon	2480100	2481735	-	asmbl_48127	none	STRG.7245.1,blat.proc3825150.chain_3360	2	STRG.7245.3	1
scaffold_12	alt_donor	11585326	11585327	-	asmbl_8818	none	STRG.15082.1	1	STRG.15082.2,blat.proc3825154.chain_3557	2
scaffold_6	spliced_intron	8560637	8560723	-	asmbl_48566,asmbl_48567	none	STRG.7737.1,STRG.7737.2	2	blat.proc3825152.chain_25	1
scaffold_16	alternate_exon	5507286	5508750	-	asmbl_17118	none	Trinity_GG_10797_c1_g1_i3,blat.proc3825158.chain_364	2	STRG.19312.3,blat.proc3825158.chain_365	2
scaffold_2	alt_acceptor	16357946	16357947	+	asmbl_25121,asmbl_25123	none	STRG.2575.1,STRG.2575.2,blat.proc3825164.chain_2859	3	blat.proc3825164.chain_2858	1
scaffold_7	alt_acceptor	1229882	1229883	+	asmbl_49594,asmbl_49599,asmbl_49600,asmbl_49602,asmbl_49603,asmbl_49604,asmbl_49606	none	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.7,Trinity_GG_22033_c0_g1_i16,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076,blat.proc3825168.chain_1080	9	STRG.8637.6,Trinity_GG_22033_c0_g1_i5	2
scaffold_17	spliced_intron	8355294	8355515	+	asmbl_18988	none	STRG.20457.2,blat.proc3825174.chain_1301	2	STRG.20457.3,Trinity_GG_28517_c0_g1_i3,blat.proc3825174.chain_1299	3
scaffold_21	alternate_exon	4106059	4106175	+	asmbl_28508	none	blat.proc3825176.chain_1205	1	STRG.23987.1,STRG.23987.2,STRG.23987.3,blat.proc3825176.chain_1207	4
scaffold_1	alternate_exon	14421376	14423286	-	asmbl_916,asmbl_917	none	STRG.1042.1,STRG.1042.2,Trinity_GG_555_c0_g1_i4	3	STRG.1042.3	1
scaffold_13	retained_intron	15751759	15752058	+	asmbl_11537	none	Trinity_GG_26444_c0_g1_i1,Trinity_GG_26444_c2_g1_i2,blat.proc3825172.chain_1372,blat.proc3825172.chain_1374	4	STRG.16624.2	1
scaffold_26	alt_acceptor	5404287	5404288	+	asmbl_34986	none	blat.proc3825178.chain_1295	1	STRG.28247.1	1
scaffold_10	alternate_exon	16072418	16072488	+	asmbl_3705	none	STRG.13091.1	1	STRG.13091.2,Trinity_GG_24530_c0_g1_i1,blat.proc3825170.chain_1694	3
scaffold_3	spliced_intron	19885239	19885401	-	asmbl_39671,asmbl_39672	none	STRG.4100.1,Trinity_GG_2243_c1_g1_i1,Trinity_GG_2243_c1_g1_i7,blat.proc3825150.chain_244,blat.proc3825150.chain_246	5	Trinity_GG_2243_c1_g1_i6,blat.proc3825150.chain_247,blat.proc3825150.chain_249	3
scaffold_24	spliced_intron	6432023	6432210	-	asmbl_32958,asmbl_32959	none	STRG.26697.1,blat.proc3825160.chain_3741,blat.proc3825160.chain_3742	3	STRG.26697.2,blat.proc3825160.chain_3740	2
scaffold_23	ends_in_intron	2992244	2992244	-	asmbl_30773	none	STRG.25748.4	1	STRG.25748.1,blat.proc3825160.chain_2952,blat.proc3825160.chain_2955	3
scaffold_4	retained_intron	4120774	4120939	-	asmbl_42497,asmbl_42498	none	Trinity_GG_2440_c0_g1_i3,blat.proc3825150.chain_594,blat.proc3825150.chain_595	3	STRG.4329.1,STRG.4329.2,STRG.4329.3,blat.proc3825150.chain_593	4
scaffold_12	skipped_exon	2926206	2928443	-	asmbl_8333	none	STRG.14526.3	1	STRG.14526.1	1
scaffold_5	retained_exon	6289561	6289653	+	asmbl_45419	none	STRG.6040.1	1	STRG.6040.2	1
scaffold_6	spliced_intron	14179224	14179390	-	asmbl_48990	none	STRG.8181.1,blat.proc3825152.chain_562	2	blat.proc3825152.chain_563	1
scaffold_14	alternate_exon	4602054	4602117	+	asmbl_12002	none	STRG.16996.2,Trinity_GG_26650_c0_g1_i2,blat.proc3825172.chain_1747	3	STRG.16996.1,Trinity_GG_26650_c0_g1_i1,blat.proc3825172.chain_1746	3
scaffold_3	starts_in_intron	14591216	14591216	-	asmbl_39406	none	STRG.3800.1,Trinity_GG_2111_c2_g1_i1,blat.proc3825150.chain_17	3	STRG.3800.2,blat.proc3825150.chain_15	2
scaffold_21	alternate_exon	9882260	9882310	-	asmbl_27984	none	STRG.24452.2	1	STRG.24452.1	1
scaffold_4	alt_donor	13825390	13825391	-	asmbl_43014	none	STRG.5009.3	1	STRG.5009.1,STRG.5009.2,blat.proc3825150.chain_1167,blat.proc3825150.chain_1168	4
scaffold_9	retained_intron	13323052	13323206	-	asmbl_55440	none	STRG.11635.1,Trinity_GG_6417_c0_g1_i1,blat.proc3825154.chain_97	3	STRG.11635.2,blat.proc3825154.chain_98	2
scaffold_21	retained_exon	3169685	3169834	+	asmbl_28456,asmbl_28457,asmbl_28458,asmbl_28464,asmbl_28467,asmbl_28468,asmbl_28469,asmbl_28471	none	STRG.23959.1,STRG.23959.2,STRG.23959.4,blat.proc3825176.chain_1132,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	9	STRG.23959.3,STRG.23959.5,blat.proc3825176.chain_1133	3
scaffold_2	alternate_exon	6903725	6903759	+	asmbl_24513	none	STRG.2036.3	1	STRG.2036.2,blat.proc3825164.chain_2155	2
scaffold_14	alt_acceptor	9294804	9294805	-	asmbl_13370,asmbl_13371,asmbl_13372,asmbl_13373,asmbl_13377,asmbl_13378,asmbl_13379	none	STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2166,blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2172,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	11	STRG.17341.1,STRG.17341.2	2
scaffold_7	spliced_intron	7789092	7789283	-	asmbl_50976,asmbl_50977	none	STRG.9034.1,STRG.9034.2,Trinity_GG_5091_c0_g1_i4,Trinity_GG_5091_c0_g1_i7,blat.proc3825152.chain_1415,blat.proc3825152.chain_1417	6	Trinity_GG_5091_c0_g1_i2,Trinity_GG_5091_c0_g1_i5,Trinity_GG_5091_c0_g1_i8,blat.proc3825152.chain_1414,blat.proc3825152.chain_1416,blat.proc3825152.chain_1418	6
scaffold_13	alt_donor	8169914	8169915	-	asmbl_9946	none	STRG.16106.2	1	STRG.16106.1,Trinity_GG_9038_c0_g1_i1,blat.proc3825156.chain_990	3
scaffold_2	retained_intron	19127889	19127928	+	asmbl_25263	none	STRG.2788.1	1	blat.proc3825164.chain_2970	1
scaffold_1	alternate_exon	6847223	6858086	-	asmbl_390	none	STRG.485.1,blat.proc3825148.chain_484	2	STRG.485.3,blat.proc3825148.chain_485	2
scaffold_5	alternate_exon	5737143	5737984	+	asmbl_45362	none	STRG.5992.3,blat.proc3825166.chain_2133	2	STRG.5992.7,Trinity_GG_20545_c0_g1_i4,blat.proc3825166.chain_2132	3
scaffold_7	retained_intron	13863191	13863810	-	asmbl_51320,asmbl_51323	none	STRG.9480.3,blat.proc3825152.chain_1825	2	STRG.9480.1,STRG.9480.2,STRG.9480.4,STRG.9480.5,blat.proc3825152.chain_1822,blat.proc3825152.chain_1823	6
scaffold_24	alt_donor	5334418	5334419	-	asmbl_32900	none	blat.proc3825162.chain_15	1	STRG.26625.1,blat.proc3825162.chain_13,blat.proc3825162.chain_14	3
scaffold_19	retained_exon	13262630	13262802	-	asmbl_22630,asmbl_22631	none	STRG.22647.1,blat.proc3825158.chain_3491,blat.proc3825158.chain_3493	3	STRG.22647.2	1
scaffold_17	spliced_intron	10048773	10050204	+	asmbl_19161,asmbl_19164	none	STRG.20618.1,STRG.20618.2,blat.proc3825174.chain_1497	3	STRG.20618.3,Trinity_GG_28608_c0_g1_i3,Trinity_GG_28608_c1_g1_i1,blat.proc3825174.chain_1498,blat.proc3825174.chain_1501	5
scaffold_2	retained_intron	15333838	15333989	+	asmbl_25030	none	STRG.2483.3,Trinity_GG_18716_c0_g1_i3	2	STRG.2483.1,Trinity_GG_18716_c0_g1_i1	2
scaffold_16	alt_donor	3577214	3577215	-	asmbl_16991	none	STRG.19176.1,blat.proc3825158.chain_265	2	STRG.19176.2	1
scaffold_23	spliced_intron	6290835	6290991	-	asmbl_30972,asmbl_30974	none	STRG.25975.3,Trinity_GG_14564_c0_g1_i5,blat.proc3825160.chain_3193	3	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190	7
scaffold_12	alt_acceptor	4756820	4756821	-	asmbl_8441,asmbl_8442	none	STRG.14654.1,STRG.14654.3,blat.proc3825154.chain_3075	3	STRG.14654.2,blat.proc3825154.chain_3076	2
scaffold_52	ends_in_intron	1700	1700	-	asmbl_46523	none	Trinity_GG_16867_c0_g1_i1,blat.proc3825162.chain_3233	2	STRG.30060.3	1
scaffold_25	alt_donor	4539033	4539034	+	asmbl_33513	none	blat.proc3825178.chain_493	1	STRG.27392.1,blat.proc3825178.chain_495	2
scaffold_4	alt_acceptor	15111245	15111246	+	asmbl_41928	none	STRG.5115.1	1	STRG.5115.2,blat.proc3825166.chain_1547	2
scaffold_4	alternate_exon	5035432	5035454	-	asmbl_42551	none	Trinity_GG_2462_c0_g1_i1,blat.proc3825150.chain_630	2	STRG.4399.3	1
scaffold_3	spliced_intron	17455934	17455991	+	asmbl_40683	none	STRG.3978.5	1	STRG.3978.2,STRG.3978.3,STRG.3978.4,Trinity_GG_19520_c0_g1_i1,Trinity_GG_19520_c0_g1_i2,blat.proc3825166.chain_435,blat.proc3825166.chain_436	7
scaffold_13	spliced_intron	8103489	8103578	+	asmbl_11099	none	STRG.16088.1,blat.proc3825172.chain_846	2	blat.proc3825172.chain_847	1
scaffold_6	skipped_exon	18209816	18210868	-	asmbl_49230	none	STRG.8496.1	1	STRG.8496.2	1
scaffold_9	ends_in_intron	9769899	9769899	+	asmbl_54254	none	Trinity_GG_23649_c3_g1_i1,blat.proc3825170.chain_185	2	STRG.11352.1,blat.proc3825170.chain_184	2
scaffold_2	spliced_intron	2995448	2995510	-	asmbl_22952	none	STRG.1746.2	1	STRG.1746.4	1
scaffold_22	starts_in_intron	9859299	9859299	-	asmbl_29562	none	Trinity_GG_14177_c0_g1_i2	1	STRG.25320.2	1
scaffold_1	retained_exon	12545144	12545270	-	asmbl_731	none	blat.proc3825148.chain_800	1	STRG.870.1,STRG.870.2,blat.proc3825148.chain_801	3
scaffold_26	starts_in_intron	3623021	3623021	+	asmbl_34803	none	Trinity_GG_32782_c1_g1_i1	1	STRG.28042.2,blat.proc3825178.chain_1087	2
scaffold_19	spliced_intron	12492311	12492484	+	asmbl_21808,asmbl_21809,asmbl_21810,asmbl_21811,asmbl_21812,asmbl_21813,asmbl_21814	none	STRG.22590.1,STRG.22590.2,STRG.22590.3,STRG.22590.4,STRG.22590.5,blat.proc3825174.chain_3624,blat.proc3825174.chain_3625,blat.proc3825174.chain_3626,blat.proc3825174.chain_3628	9	blat.proc3825174.chain_3623	1
scaffold_9	spliced_intron	15746966	15746996	+	asmbl_54586	none	STRG.11762.2	1	STRG.11762.1,Trinity_GG_23872_c1_g1_i1,blat.proc3825170.chain_546	3
scaffold_16	ends_in_intron	4044878	4044878	-	asmbl_17041	none	Trinity_GG_10793_c0_g1_i2,blat.proc3825158.chain_346	2	STRG.19222.2,blat.proc3825158.chain_347	2
scaffold_13	starts_in_intron	15736749	15736749	-	asmbl_10252	none	STRG.16618.2,blat.proc3825156.chain_1440	2	blat.proc3825156.chain_1439	1
scaffold_3	starts_in_intron	13179086	13179086	+	asmbl_40432	none	Trinity_GG_19370_c0_g2_i1,blat.proc3825166.chain_167	2	STRG.3682.1,blat.proc3825166.chain_163,blat.proc3825166.chain_165,blat.proc3825166.chain_166	4
scaffold_1	ends_in_intron	5728905	5728905	+	asmbl_1762	none	blat.proc3825164.chain_501	1	STRG.387.1,STRG.387.2,blat.proc3825164.chain_502,blat.proc3825164.chain_503,blat.proc3825164.chain_504	5
scaffold_2	spliced_intron	14192137	14192314	-	asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23569,asmbl_23570,asmbl_23571	none	STRG.2416.1,STRG.2416.2,STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	6	Trinity_GG_1338_c0_g1_i3,Trinity_GG_1338_c0_g1_i8,blat.proc3825148.chain_2412,blat.proc3825148.chain_2416	4
scaffold_27	retained_intron	7449983	7450375	+	asmbl_36452	none	STRG.29104.1,Trinity_GG_33436_c1_g1_i2,blat.proc3825178.chain_2318	3	blat.proc3825178.chain_2319	1
scaffold_23	alt_acceptor	7941282	7941283	-	asmbl_31066	none	STRG.26099.2	1	STRG.26099.3	1
scaffold_11	alt_donor	13683097	13683098	+	asmbl_6071	none	STRG.14225.1,blat.proc3825170.chain_2767	2	STRG.14225.2	1
scaffold_9	spliced_intron	17790249	17790655	-	asmbl_55681	none	STRG.11865.1,Trinity_GG_6570_c0_g1_i3,blat.proc3825154.chain_358	3	STRG.11865.2,Trinity_GG_6570_c0_g1_i2,blat.proc3825154.chain_356,blat.proc3825154.chain_357	4
scaffold_5	starts_in_intron	6190640	6190640	+	asmbl_45408	none	Trinity_GG_20625_c0_g1_i1,Trinity_GG_20625_c0_g1_i8,blat.proc3825166.chain_2275,blat.proc3825166.chain_2277	4	STRG.6033.1,STRG.6033.2,Trinity_GG_20625_c0_g1_i2,blat.proc3825166.chain_2276,blat.proc3825166.chain_2278,blat.proc3825166.chain_2279,blat.proc3825166.chain_2280	7
scaffold_1	ends_in_intron	969594	969594	-	asmbl_39	none	Trinity_GG_40_c0_g1_i1,blat.proc3825148.chain_80	2	STRG.58.1,STRG.58.2,blat.proc3825148.chain_78,blat.proc3825148.chain_81	4
scaffold_21	alt_acceptor	266744	266745	+	asmbl_28252	none	STRG.23724.1,Trinity_GG_30449_c0_g1_i1,blat.proc3825176.chain_929	3	STRG.23724.2,Trinity_GG_30449_c0_g1_i3,blat.proc3825176.chain_930	3
scaffold_4	starts_in_intron	16809154	16809154	-	asmbl_43219	none	blat.proc3825150.chain_1388	1	STRG.5269.1,Trinity_GG_2918_c0_g1_i4,blat.proc3825150.chain_1386,blat.proc3825150.chain_1387	4
scaffold_25	skipped_exon	4332946	4335709	-	asmbl_34182	none	STRG.27361.1,blat.proc3825162.chain_721	2	STRG.27361.2,blat.proc3825162.chain_722	2
scaffold_11	skipped_exon	8330782	8331357	+	asmbl_5751	none	Trinity_GG_24932_c0_g1_i2,blat.proc3825170.chain_2371	2	STRG.13849.1,Trinity_GG_24932_c0_g1_i1,blat.proc3825170.chain_2372	3
scaffold_26	alt_acceptor	2960712	2960713	-	asmbl_35459,asmbl_35460,asmbl_35462,asmbl_35463	none	STRG.27989.1,STRG.27989.2,STRG.27989.3,blat.proc3825162.chain_1299,blat.proc3825162.chain_1300,blat.proc3825162.chain_1301	6	STRG.27989.4,blat.proc3825162.chain_1303	2
scaffold_14	retained_intron	12824418	12824705	-	asmbl_13618	none	blat.proc3825156.chain_2461	1	STRG.17598.1,STRG.17598.2,STRG.17598.4,blat.proc3825156.chain_2458,blat.proc3825156.chain_2464	5
scaffold_17	retained_intron	6976792	6976967	-	asmbl_18016	none	blat.proc3825158.chain_1411	1	STRG.20360.1,STRG.20360.2,blat.proc3825158.chain_1412,blat.proc3825158.chain_1413	4
scaffold_13	alternate_exon	5575915	5576162	-	asmbl_9697,asmbl_9699	none	STRG.15857.2,STRG.15857.3,blat.proc3825156.chain_740	3	STRG.15857.1,blat.proc3825156.chain_741	2
scaffold_8	alt_donor	4194678	4194679	-	asmbl_51761	none	STRG.9896.2	1	blat.proc3825152.chain_2109	1
scaffold_24	alt_acceptor	10335054	10335055	+	asmbl_32554,asmbl_32556	none	STRG.26993.1,STRG.26993.2,blat.proc3825178.chain_214	3	blat.proc3825178.chain_213	1
scaffold_10	alternate_exon	7840089	7840117	+	asmbl_3306	none	STRG.12576.2	1	STRG.12576.1,blat.proc3825170.chain_1209	2
scaffold_2	skipped_exon	17613187	17614274	+	asmbl_25185	none	STRG.2653.1,blat.proc3825164.chain_2942	2	STRG.2653.2,blat.proc3825164.chain_2943	2
scaffold_24	alt_acceptor	7100054	7100055	+	asmbl_32368	none	STRG.26761.1	1	STRG.26761.2	1
scaffold_20	alternate_exon	11776603	11776965	-	asmbl_26197	none	STRG.23689.2,Trinity_GG_13189_c0_g1_i3,blat.proc3825160.chain_767	3	STRG.23689.1,Trinity_GG_13189_c0_g1_i2,blat.proc3825160.chain_769	3
scaffold_19	starts_in_intron	13124972	13124972	-	asmbl_22598	none	blat.proc3825158.chain_3460	1	STRG.22631.1,blat.proc3825158.chain_3461	2
scaffold_16	retained_intron	11664164	11664277	+	asmbl_16595	none	STRG.19684.2	1	STRG.19684.1,blat.proc3825174.chain_618,blat.proc3825174.chain_619	3
scaffold_24	spliced_intron	6223797	6223880	-	asmbl_32946,asmbl_32947,asmbl_32948	none	STRG.26685.1,STRG.26685.2,blat.proc3825160.chain_3732,blat.proc3825160.chain_3737	4	STRG.26685.3,STRG.26685.4,STRG.26685.5,STRG.26685.6,Trinity_GG_14882_c0_g1_i11,blat.proc3825160.chain_3731	6
scaffold_14	retained_exon	7295149	7295226	+	asmbl_12149	none	STRG.17169.2,blat.proc3825172.chain_1940	2	STRG.17169.1,blat.proc3825172.chain_1939,blat.proc3825172.chain_1941	3
scaffold_8	ends_in_intron	5618485	5618485	-	asmbl_51841	none	blat.proc3825152.chain_2161	1	STRG.9977.1,blat.proc3825152.chain_2160	2
scaffold_5	ends_in_intron	8780727	8780727	-	asmbl_44243	none	Trinity_GG_3503_c0_g1_i2,blat.proc3825150.chain_2427	2	STRG.6218.1,blat.proc3825150.chain_2428	2
scaffold_16	spliced_intron	10448430	10449544	+	asmbl_16536,asmbl_16538	none	STRG.19614.2,STRG.19614.4,blat.proc3825174.chain_484	3	STRG.19614.3,Trinity_GG_28027_c0_g1_i5,blat.proc3825174.chain_487,blat.proc3825174.chain_488	4
scaffold_12	starts_in_intron	15410462	15410462	+	asmbl_8127	none	Trinity_GG_25745_c0_g1_i2,blat.proc3825172.chain_72	2	STRG.15343.1,Trinity_GG_25745_c0_g1_i1,blat.proc3825172.chain_73	3
scaffold_7	retained_intron	13221544	13221715	+	asmbl_50328,asmbl_50330	none	STRG.9435.1,Trinity_GG_22553_c0_g1_i1,blat.proc3825168.chain_1955	3	STRG.9435.2,Trinity_GG_22553_c0_g1_i2,blat.proc3825168.chain_1956	3
scaffold_26	alternate_exon	2955125	2955191	-	asmbl_35458,asmbl_35460,asmbl_35462	none	STRG.27989.2,STRG.27989.3,STRG.27989.4,blat.proc3825162.chain_1297	4	STRG.27989.1,blat.proc3825162.chain_1298	2
scaffold_20	starts_in_intron	10313334	10313334	+	asmbl_26947	none	Trinity_GG_30312_c1_g1_i1,blat.proc3825176.chain_692	2	STRG.23577.1,blat.proc3825176.chain_690,blat.proc3825176.chain_691	3
scaffold_2	spliced_intron	15271520	15271659	+	asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25018,asmbl_25019,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619	7	blat.proc3825164.chain_2621,blat.proc3825164.chain_2622	2
scaffold_14	retained_exon	11573626	11573660	-	asmbl_13499	none	STRG.17499.2,blat.proc3825156.chain_2304	2	blat.proc3825156.chain_2302	1
scaffold_1	alternate_exon	17525054	17525113	-	asmbl_1034	none	STRG.1212.1	1	STRG.1211.2	1
scaffold_4	starts_in_intron	14982425	14982425	+	asmbl_41917	none	Trinity_GG_20175_c0_g1_i2,blat.proc3825166.chain_1525	2	STRG.5107.1,STRG.5107.2,STRG.5107.3,blat.proc3825166.chain_1523,blat.proc3825166.chain_1524	5
scaffold_2	retained_exon	6899410	6899421	+	asmbl_24511,asmbl_24512	none	blat.proc3825164.chain_2156,blat.proc3825164.chain_2158	2	STRG.2036.1,STRG.2036.2,STRG.2036.3,STRG.2036.4,blat.proc3825164.chain_2155,blat.proc3825164.chain_2160	6
scaffold_4	skipped_exon	15007037	15008243	+	asmbl_41919	none	STRG.5108.2,blat.proc3825166.chain_1536	2	STRG.5108.1,blat.proc3825166.chain_1537	2
scaffold_13	alt_acceptor	6628218	6628219	-	asmbl_9810	none	STRG.15960.1,Trinity_GG_8986_c0_g1_i1,blat.proc3825156.chain_869	3	Trinity_GG_8986_c0_g1_i4,blat.proc3825156.chain_867	2
scaffold_6	alternate_exon	5430341	5430391	+	asmbl_46946	none	STRG.7513.2	1	STRG.7513.1,blat.proc3825166.chain_3653	2
scaffold_12	alt_donor	12339619	12339620	+	asmbl_7989	none	STRG.15141.1	1	STRG.15141.2	1
scaffold_9	alt_acceptor	7796386	7796387	+	asmbl_54135	none	blat.proc3825170.chain_74	1	blat.proc3825170.chain_70,blat.proc3825170.chain_71,blat.proc3825170.chain_72	3
scaffold_1	alternate_exon	16730156	16733505	+	asmbl_2501	none	STRG.1176.1,blat.proc3825164.chain_1253	2	STRG.1176.2	1
scaffold_12	starts_in_intron	8557835	8557835	+	asmbl_7822	none	Trinity_GG_25550_c0_g1_i2,blat.proc3825170.chain_3462	2	STRG.14879.1,Trinity_GG_25550_c0_g1_i1,blat.proc3825170.chain_3459,blat.proc3825170.chain_3461	4
scaffold_7	skipped_exon	1429518	1430722	-	asmbl_50727	none	STRG.8647.1	1	STRG.8647.2	1
scaffold_22	spliced_intron	6513438	6513461	+	asmbl_30116	none	STRG.24989.2	1	STRG.24989.1,Trinity_GG_31132_c0_g1_i2,blat.proc3825176.chain_2095	3
scaffold_2	retained_intron	16342563	16343039	-	asmbl_23684	none	blat.proc3825148.chain_2565	1	STRG.2577.1,Trinity_GG_1431_c0_g2_i1,blat.proc3825148.chain_2567	3
scaffold_9	retained_exon	10916874	10917011	+	asmbl_54307,asmbl_54311	none	STRG.11408.2,blat.proc3825170.chain_169,blat.proc3825170.chain_171	3	STRG.11408.1,blat.proc3825170.chain_168,blat.proc3825170.chain_170,blat.proc3825170.chain_172	4
scaffold_18	starts_in_intron	6240014	6240014	-	asmbl_19889	none	STRG.21355.1,blat.proc3825158.chain_2304	2	STRG.21355.2	1
scaffold_2	ends_in_intron	13325997	13325997	+	asmbl_24835	none	STRG.2344.4	1	STRG.2344.1,STRG.2344.2,STRG.2344.3,STRG.2344.5,blat.proc3825164.chain_2553,blat.proc3825164.chain_2555,blat.proc3825164.chain_2556	7
scaffold_4	retained_intron	4112681	4112829	-	asmbl_42483	none	blat.proc3825150.chain_475	1	STRG.4317.1,blat.proc3825150.chain_476,blat.proc3825150.chain_478,blat.proc3825150.chain_481	4
scaffold_11	alt_donor	10398841	10398842	+	asmbl_5939,asmbl_5940	none	STRG.14049.1,blat.proc3825170.chain_2496,blat.proc3825170.chain_2498	3	STRG.14049.2,blat.proc3825170.chain_2497	2
scaffold_27	starts_in_intron	6262542	6262542	+	asmbl_36395	none	Trinity_GG_33355_c1_g1_i5,blat.proc3825178.chain_2192	2	STRG.29016.1,STRG.29016.2,STRG.29016.3,blat.proc3825178.chain_2190,blat.proc3825178.chain_2191,blat.proc3825178.chain_2193,blat.proc3825178.chain_2194	7
scaffold_26	ends_in_intron	3720424	3720424	+	asmbl_34822	none	Trinity_GG_32783_c0_g1_i2,blat.proc3825178.chain_1089	2	STRG.28053.1,Trinity_GG_32783_c0_g1_i1,blat.proc3825178.chain_1088	3
scaffold_13	alt_donor	5948404	5948405	-	asmbl_9756,asmbl_9757,asmbl_9760	none	STRG.15911.1,STRG.15911.2,blat.proc3825156.chain_755,blat.proc3825156.chain_756	4	STRG.15911.3,STRG.15911.4	2
scaffold_24	alt_acceptor	3656073	3656074	+	asmbl_32154	none	STRG.26550.6	1	STRG.26550.1,STRG.26550.2,STRG.26550.3,STRG.26550.5,Trinity_GG_31970_c0_g1_i5,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463,blat.proc3825176.chain_3465,blat.proc3825176.chain_3466,blat.proc3825176.chain_3467,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469,blat.proc3825176.chain_3470	13
scaffold_21	starts_in_intron	679503	679503	-	asmbl_27341,asmbl_27342	none	STRG.23755.3,STRG.23755.5	2	STRG.23755.2,STRG.23755.4,blat.proc3825160.chain_885,blat.proc3825160.chain_886	4
scaffold_2	spliced_intron	18964556	18964833	+	asmbl_25258	none	STRG.2768.1,blat.proc3825164.chain_3016	2	Trinity_GG_18867_c0_g1_i2,blat.proc3825164.chain_3015	2
scaffold_1	alternate_exon	14421376	14422410	-	asmbl_919	none	blat.proc3825148.chain_1058	1	STRG.1042.3	1
scaffold_28	retained_intron	5249878	5250166	-	asmbl_38275	none	STRG.29678.2,blat.proc3825162.chain_2790	2	STRG.29678.1,blat.proc3825162.chain_2789	2
scaffold_7	ends_in_intron	6036417	6036417	+	asmbl_49836,asmbl_49838	none	blat.proc3825168.chain_1381,blat.proc3825168.chain_1382	2	STRG.8909.1,Trinity_GG_22211_c0_g1_i1,blat.proc3825168.chain_1380	3
scaffold_15	retained_intron	12133093	12133392	-	asmbl_14565	none	blat.proc3825156.chain_3496	1	STRG.18689.1,blat.proc3825156.chain_3499,blat.proc3825156.chain_3500	3
scaffold_11	spliced_intron	11943939	11944171	-	asmbl_7044,asmbl_7052	none	STRG.14177.4,blat.proc3825154.chain_2596	2	Trinity_GG_7854_c1_g1_i1,blat.proc3825154.chain_2597	2
scaffold_15	retained_intron	4469772	4470220	-	asmbl_14145	none	Trinity_GG_10224_c0_g1_i1,blat.proc3825156.chain_3020	2	STRG.18174.1,Trinity_GG_10224_c0_g1_i2,blat.proc3825156.chain_3019	3
scaffold_16	ends_in_intron	1779787	1779787	+	asmbl_16086,asmbl_16091	none	STRG.19102.2,blat.proc3825174.chain_20,blat.proc3825174.chain_23	3	STRG.19102.1,blat.proc3825174.chain_22	2
scaffold_8	alt_acceptor	5698565	5698566	+	asmbl_52897	none	STRG.9987.2	1	STRG.9987.1,Trinity_GG_22869_c1_g1_i1,blat.proc3825168.chain_2554	3
scaffold_20	starts_in_intron	4509999	4509999	-	asmbl_25745	none	blat.proc3825160.chain_149	1	STRG.23132.1,blat.proc3825160.chain_148,blat.proc3825160.chain_150	3
scaffold_13	alternate_exon	2657155	2658669	-	asmbl_9473	none	STRG.15572.1,Trinity_GG_8728_c0_g1_i1,blat.proc3825156.chain_386,blat.proc3825156.chain_452	4	blat.proc3825156.chain_384	1
scaffold_21	alternate_exon	5137359	5139735	-	asmbl_27610,asmbl_27612	none	STRG.24059.2,STRG.24059.3	2	STRG.24059.4	1
scaffold_15	retained_intron	6780650	6780734	-	asmbl_14252	none	STRG.18292.2	1	STRG.18292.1,blat.proc3825156.chain_3126	2
scaffold_18	alt_acceptor	8399418	8399419	+	asmbl_20831,asmbl_20837	none	STRG.21513.1,STRG.21513.3,blat.proc3825174.chain_2580	3	STRG.21513.2,blat.proc3825174.chain_2581	2
scaffold_15	retained_exon	12123802	12123873	+	asmbl_15540	none	STRG.18687.1,blat.proc3825172.chain_3308	2	STRG.18687.2	1
scaffold_13	spliced_intron	3322991	3323068	-	asmbl_9529,asmbl_9531	none	STRG.15640.1,STRG.15640.2,Trinity_GG_8777_c0_g1_i1,blat.proc3825156.chain_518	4	Trinity_GG_8777_c0_g1_i2,blat.proc3825156.chain_517	2
scaffold_12	retained_intron	4722673	4722768	-	asmbl_8431,asmbl_8437	none	STRG.14649.1,STRG.14649.3,blat.proc3825154.chain_3097	3	STRG.14649.5,blat.proc3825154.chain_3100,blat.proc3825154.chain_3101	3
scaffold_11	spliced_intron	8073049	8073152	-	asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6828,asmbl_6834	none	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335,blat.proc3825154.chain_2336	4	Trinity_GG_7709_c1_g1_i4,blat.proc3825154.chain_2337	2
scaffold_2	alternate_exon	18916832	18916883	-	asmbl_23837	none	Trinity_GG_1525_c0_g1_i1,blat.proc3825148.chain_2714	2	STRG.2767.1,STRG.2767.2,Trinity_GG_1525_c0_g1_i2,Trinity_GG_1525_c0_g1_i3,Trinity_GG_1525_c0_g1_i4,blat.proc3825148.chain_2712,blat.proc3825148.chain_2713,blat.proc3825148.chain_2715	8
scaffold_6	spliced_intron	3052979	3053100	+	asmbl_46804	none	blat.proc3825166.chain_3527	1	Trinity_GG_21338_c0_g2_i1,blat.proc3825166.chain_3528	2
scaffold_3	spliced_intron	16346254	16346337	-	asmbl_39496	none	Trinity_GG_2173_c1_g1_i1,blat.proc3825150.chain_118	2	Trinity_GG_2173_c1_g1_i2,blat.proc3825150.chain_119	2
scaffold_21	alt_donor	56814	56815	-	asmbl_27273	none	STRG.23720.3,blat.proc3825160.chain_830	2	STRG.23720.1,STRG.23720.2,blat.proc3825160.chain_828,blat.proc3825160.chain_829,blat.proc3825160.chain_831	5
scaffold_16	alternate_exon	8643425	8646024	+	asmbl_16429,asmbl_16430,asmbl_16434	none	STRG.19492.1,STRG.19492.2,STRG.19492.4,blat.proc3825174.chain_368	4	STRG.19492.3	1
scaffold_27	alternate_exon	2830935	2831797	+	asmbl_36128	none	Trinity_GG_33233_c0_g1_i2,blat.proc3825178.chain_1935	2	STRG.28768.1,STRG.28768.2,blat.proc3825178.chain_1932,blat.proc3825178.chain_1934	4
scaffold_18	skipped_exon	5984775	5987240	+	asmbl_20638,asmbl_20642	none	blat.proc3825174.chain_2286,blat.proc3825174.chain_2288,blat.proc3825174.chain_2290,blat.proc3825174.chain_2292	4	blat.proc3825174.chain_2289,blat.proc3825174.chain_2291,blat.proc3825174.chain_2293	3
scaffold_6	alt_acceptor	12534659	12534660	-	asmbl_48820	none	STRG.8010.1,blat.proc3825152.chain_400	2	STRG.8010.2,STRG.8010.3,blat.proc3825152.chain_399	3
scaffold_1	retained_intron	9297505	9297576	+	asmbl_1977	none	blat.proc3825164.chain_769	1	STRG.629.1,STRG.629.2,Trinity_GG_17708_c0_g1_i1,Trinity_GG_17708_c0_g1_i2,Trinity_GG_17708_c0_g1_i5,blat.proc3825164.chain_768,blat.proc3825164.chain_770,blat.proc3825164.chain_771	8
scaffold_21	alt_donor	8519278	8519279	-	asmbl_27925	none	STRG.24377.3,blat.proc3825160.chain_1559	2	STRG.24377.2,blat.proc3825160.chain_1556	2
scaffold_6	starts_in_intron	1517486	1517486	+	asmbl_46713	none	STRG.7199.3,Trinity_GG_21276_c0_g1_i2,blat.proc3825166.chain_3395	3	STRG.7199.1,STRG.7199.2,blat.proc3825166.chain_3394	3
scaffold_25	spliced_intron	9336651	9337098	+	asmbl_33807,asmbl_33808,asmbl_33809,asmbl_33810	none	STRG.27762.1,blat.proc3825178.chain_877,blat.proc3825178.chain_878,blat.proc3825178.chain_879,blat.proc3825178.chain_880,blat.proc3825178.chain_882	6	blat.proc3825178.chain_881	1
scaffold_3	retained_intron	6659747	6660509	+	asmbl_40104,asmbl_40107,asmbl_40109,asmbl_40112,asmbl_40113,asmbl_40114,asmbl_40115	none	STRG.3295.3,Trinity_GG_19180_c0_g1_i4,blat.proc3825164.chain_3561,blat.proc3825164.chain_3564,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3570,blat.proc3825164.chain_3571	8	STRG.3295.1,STRG.3295.2,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565	6
scaffold_11	spliced_intron	13462843	13463131	-	asmbl_7129	none	STRG.14207.3,Trinity_GG_7945_c0_g1_i1,blat.proc3825154.chain_2747	3	STRG.14207.1,STRG.14207.2,Trinity_GG_7945_c0_g1_i4,Trinity_GG_7945_c0_g1_i5,blat.proc3825154.chain_2748,blat.proc3825154.chain_2749	6
scaffold_21	retained_exon	8129600	8129635	-	asmbl_27894	none	blat.proc3825160.chain_1511	1	STRG.24349.5,blat.proc3825160.chain_1508,blat.proc3825160.chain_1509,blat.proc3825160.chain_1512	4
scaffold_6	ends_in_intron	12054227	12054227	-	asmbl_48785	none	Trinity_GG_4489_c0_g1_i2	1	STRG.7980.1,blat.proc3825152.chain_303	2
scaffold_14	ends_in_intron	7584765	7584765	-	asmbl_13230	none	Trinity_GG_9650_c0_g1_i1,blat.proc3825156.chain_2020	2	STRG.17210.2	1
scaffold_27	starts_in_intron	7465388	7465388	+	asmbl_36457	none	Trinity_GG_33434_c0_g1_i2,blat.proc3825178.chain_2313	2	STRG.29107.1,Trinity_GG_33434_c0_g1_i3,blat.proc3825178.chain_2314	3
scaffold_10	alt_acceptor	4913313	4913314	+	asmbl_3131	none	STRG.12313.1,blat.proc3825170.chain_1005	2	STRG.12312.3	1
scaffold_12	retained_intron	12349852	12350033	+	asmbl_7992	none	Trinity_GG_25652_c0_g1_i3,blat.proc3825170.chain_3646	2	STRG.15140.1,Trinity_GG_25652_c0_g1_i2,blat.proc3825170.chain_3644,blat.proc3825170.chain_3645	4
scaffold_16	alt_donor	10447527	10447528	+	asmbl_16536	none	STRG.19614.2,blat.proc3825174.chain_484	2	STRG.19614.4	1
scaffold_26	retained_intron	6721964	6722078	+	asmbl_35107	none	STRG.28365.2,blat.proc3825178.chain_1438	2	STRG.28365.3	1
scaffold_5	retained_intron	14731114	14731222	-	asmbl_44615	none	Trinity_GG_3740_c0_g1_i4,blat.proc3825150.chain_2847	2	STRG.6676.1,blat.proc3825150.chain_2844,blat.proc3825150.chain_2845	3
scaffold_27	spliced_intron	2883096	2883240	-	asmbl_36865,asmbl_36867	none	STRG.28772.1,STRG.28772.2,blat.proc3825162.chain_2014	3	STRG.28772.3,blat.proc3825162.chain_2015	2
scaffold_8	spliced_intron	5433999	5434119	+	asmbl_52884,asmbl_52887	none	STRG.9974.1,STRG.9974.2,blat.proc3825168.chain_2432	3	blat.proc3825168.chain_2431	1
scaffold_4	retained_intron	3237961	3238369	-	asmbl_42422,asmbl_42425,asmbl_42426	none	STRG.4249.1,STRG.4249.3,Trinity_GG_2372_c0_g1_i5,blat.proc3825150.chain_494	4	STRG.4249.2,blat.proc3825150.chain_493	2
scaffold_5	spliced_intron	15031404	15031492	-	asmbl_44630	none	STRG.6696.1,blat.proc3825150.chain_2863	2	blat.proc3825150.chain_2861	1
scaffold_7	skipped_exon	13960169	13962754	+	asmbl_50395	none	blat.proc3825168.chain_2027	1	STRG.9495.1,STRG.9495.2,Trinity_GG_22592_c0_g1_i1,blat.proc3825168.chain_2025,blat.proc3825168.chain_2028	5
scaffold_14	alt_acceptor	10479291	10479292	+	asmbl_12324	none	blat.proc3825172.chain_2144	1	STRG.17398.1,blat.proc3825172.chain_2142	2
scaffold_12	spliced_intron	6943372	6943864	-	asmbl_8547	none	STRG.14763.1,blat.proc3825154.chain_3246	2	STRG.14763.2,Trinity_GG_8221_c0_g1_i4,Trinity_GG_8241_c0_g1_i3,blat.proc3825154.chain_3245	4
scaffold_14	spliced_intron	11676499	11676859	-	asmbl_13520	none	STRG.17513.2,blat.proc3825156.chain_2347	2	STRG.17513.3,blat.proc3825156.chain_2348	2
scaffold_9	alternate_exon	9616774	9617970	-	asmbl_55220	none	STRG.11331.1,blat.proc3825152.chain_3602	2	STRG.11331.2,blat.proc3825152.chain_3603	2
scaffold_11	spliced_intron	3140143	3140263	-	asmbl_6531	none	Trinity_GG_7536_c1_g1_i1,blat.proc3825154.chain_2027	2	Trinity_GG_7536_c1_g1_i2,blat.proc3825154.chain_2028	2
scaffold_25	spliced_intron	5828738	5828914	-	asmbl_34287,asmbl_34288,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294	none	STRG.27479.1,STRG.27479.4,Trinity_GG_15422_c0_g1_i7,blat.proc3825162.chain_875,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_879,blat.proc3825162.chain_880	8	blat.proc3825162.chain_881	1
scaffold_18	retained_intron	9258671	9259387	-	asmbl_20061,asmbl_20062	none	STRG.21569.2,STRG.21569.3,blat.proc3825158.chain_2485	3	STRG.21569.1,Trinity_GG_12060_c0_g1_i1,blat.proc3825158.chain_2488	3
scaffold_14	retained_intron	15345450	15346208	-	asmbl_13714	none	STRG.17765.2	1	blat.proc3825156.chain_2607	1
scaffold_2	alt_donor	15460729	15460730	-	asmbl_23632	none	STRG.2497.1	1	Trinity_GG_1357_c0_g1_i1,blat.proc3825148.chain_2450	2
scaffold_2	spliced_intron	892404	892512	+	asmbl_24138,asmbl_24139,asmbl_24144,asmbl_24145	none	STRG.1566.2,STRG.1566.4,STRG.1566.5,blat.proc3825164.chain_1726,blat.proc3825164.chain_1731	5	STRG.1566.1,STRG.1566.3,blat.proc3825164.chain_1727,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730	5
scaffold_8	starts_in_intron	3106076	3106076	-	asmbl_51732,asmbl_51733	none	STRG.9828.2,blat.proc3825152.chain_2115	2	STRG.9828.1,blat.proc3825152.chain_2113,blat.proc3825152.chain_2114	3
scaffold_8	spliced_intron	7484208	7484297	-	asmbl_51911	none	STRG.10078.1,blat.proc3825152.chain_2259	2	Trinity_GG_5574_c0_g1_i5,blat.proc3825152.chain_2255	2
scaffold_14	ends_in_intron	400676	400676	+	asmbl_11754	none	Trinity_GG_26526_c0_g1_i10,blat.proc3825172.chain_1507	2	STRG.16734.1,STRG.16734.2,STRG.16734.3,STRG.16734.4,STRG.16734.5,STRG.16734.6,Trinity_GG_26526_c0_g1_i18,blat.proc3825172.chain_1514	8
scaffold_28	retained_intron	5358747	5358813	-	asmbl_38287	none	STRG.29684.2	1	STRG.29684.1,blat.proc3825162.chain_2873	2
scaffold_21	ends_in_intron	4970020	4970020	+	asmbl_28547	none	Trinity_GG_30638_c0_g1_i4,blat.proc3825176.chain_1256	2	STRG.24041.2	1
scaffold_10	spliced_intron	1076179	1076832	-	asmbl_4043	none	STRG.11997.3,Trinity_GG_6671_c0_g1_i3,blat.proc3825154.chain_549	3	STRG.11997.1,STRG.11997.2	2
scaffold_6	spliced_intron	9585597	9585676	+	asmbl_47231	none	STRG.7810.1,blat.proc3825168.chain_286	2	Trinity_GG_21611_c0_g1_i1,blat.proc3825168.chain_285	2
scaffold_22	alt_acceptor	3001811	3001812	-	asmbl_29161	none	STRG.24787.1,blat.proc3825160.chain_1973	2	STRG.24787.2,blat.proc3825160.chain_1974	2
scaffold_5	alt_acceptor	19054805	19054806	+	asmbl_46306	none	Trinity_GG_21165_c0_g1_i2,blat.proc3825166.chain_3221	2	STRG.7018.1,Trinity_GG_21165_c0_g1_i1,blat.proc3825166.chain_3222	3
scaffold_3	alternate_exon	17375634	17375710	+	asmbl_40673	none	STRG.3968.1,blat.proc3825166.chain_473	2	STRG.3968.2,Trinity_GG_19540_c0_g1_i1	2
scaffold_24	alt_acceptor	5940320	5940321	+	asmbl_32255,asmbl_32262,asmbl_32264,asmbl_32266,asmbl_32269	none	Trinity_GG_32084_c0_g1_i2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3665,blat.proc3825176.chain_3670,blat.proc3825176.chain_3672,blat.proc3825176.chain_3680	6	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3669,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	14
scaffold_13	alt_donor	12142406	12142407	+	asmbl_11337	none	STRG.16348.2,Trinity_GG_26265_c0_g1_i2,blat.proc3825172.chain_1082	3	STRG.16348.1,Trinity_GG_26265_c0_g1_i1,blat.proc3825172.chain_1081	3
scaffold_8	spliced_intron	11810649	11810780	+	asmbl_53266,asmbl_53268	none	STRG.10386.1,blat.proc3825168.chain_2984,blat.proc3825168.chain_2987	3	blat.proc3825168.chain_2986	1
scaffold_8	spliced_intron	11760968	11761396	-	asmbl_52166	none	STRG.10380.3	1	STRG.10380.1,blat.proc3825152.chain_2603	2
scaffold_1	alternate_exon	1324283	1324438	+	asmbl_1471	none	STRG.77.1,Trinity_GG_17374_c0_g1_i1,blat.proc3825164.chain_190	3	STRG.77.2	1
scaffold_19	retained_intron	12491455	12492160	+	asmbl_21814	none	STRG.22590.2	1	STRG.22590.3,blat.proc3825174.chain_3624	2
scaffold_3	spliced_intron	11270000	11270142	+	asmbl_40335	none	STRG.3552.1,Trinity_GG_19325_c0_g1_i2,blat.proc3825166.chain_76	3	Trinity_GG_19325_c0_g1_i1,blat.proc3825166.chain_77	2
scaffold_24	retained_intron	1939606	1939723	-	asmbl_32752	none	STRG.26420.1,blat.proc3825160.chain_3551	2	STRG.26420.2,blat.proc3825160.chain_3552	2
scaffold_8	spliced_intron	16278978	16279098	-	asmbl_52381	none	STRG.10619.1,blat.proc3825152.chain_2812	2	STRG.10619.2,blat.proc3825152.chain_2813	2
scaffold_27	spliced_intron	6742224	6742264	+	asmbl_36412	none	STRG.29052.1	1	STRG.29052.2,Trinity_GG_33384_c0_g1_i1,blat.proc3825178.chain_2244,blat.proc3825178.chain_2245	4
scaffold_2	spliced_intron	19881129	19881471	+	asmbl_25297	none	STRG.2834.1,Trinity_GG_18872_c0_g1_i2,blat.proc3825164.chain_3023	3	STRG.2834.2,Trinity_GG_18872_c0_g1_i1,blat.proc3825164.chain_3022	3
scaffold_8	retained_exon	12920319	12920440	-	asmbl_52245,asmbl_52246,asmbl_52247,asmbl_52251,asmbl_52252	none	STRG.10480.2,STRG.10480.3,STRG.10480.5,STRG.10480.6,STRG.10480.7,blat.proc3825152.chain_2736,blat.proc3825152.chain_2737,blat.proc3825152.chain_2738	8	STRG.10480.4	1
scaffold_4	starts_in_intron	6675204	6675204	-	asmbl_42693,asmbl_42694	none	STRG.4524.2,STRG.4524.3,blat.proc3825150.chain_802	3	STRG.4524.1,blat.proc3825150.chain_804	2
scaffold_10	ends_in_intron	13284967	13284967	-	asmbl_4872	none	Trinity_GG_7237_c0_g2_i1	1	blat.proc3825154.chain_1545	1
scaffold_18	alt_donor	7948287	7948288	-	asmbl_19991	none	STRG.21494.2,blat.proc3825158.chain_2403	2	STRG.21494.1,STRG.21494.3,blat.proc3825158.chain_2402	3
scaffold_20	alt_donor	9677133	9677134	+	asmbl_26882	none	STRG.23508.1,blat.proc3825176.chain_677	2	STRG.23508.2	1
scaffold_5	starts_in_intron	6912805	6912805	+	asmbl_45459	none	Trinity_GG_20627_c0_g1_i1,blat.proc3825166.chain_2283	2	STRG.6104.2,blat.proc3825166.chain_2287	2
scaffold_9	alt_acceptor	11752016	11752017	+	asmbl_54374	none	STRG.11491.1,Trinity_GG_23702_c2_g1_i1,blat.proc3825170.chain_281	3	STRG.11491.2	1
scaffold_28	starts_in_intron	8067925	8067925	+	asmbl_37722	none	blat.proc3825178.chain_3014	1	STRG.29875.1,STRG.29875.2,blat.proc3825178.chain_3013	3
scaffold_573	ends_in_intron	3925	3925	-	asmbl_46599	none	blat.proc3825162.chain_3499	1	STRG.30382.2	1
scaffold_25	retained_intron	6302449	6302790	+	asmbl_33614,asmbl_33618	none	blat.proc3825178.chain_555,blat.proc3825178.chain_557	2	STRG.27515.1,STRG.27515.2,blat.proc3825178.chain_556,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	6
scaffold_4	alt_donor	3237422	3237423	-	asmbl_42425	none	STRG.4249.3	1	STRG.4249.1,STRG.4249.4	2
scaffold_16	spliced_intron	11664164	11664277	+	asmbl_16593,asmbl_16594	none	STRG.19684.1,blat.proc3825174.chain_618,blat.proc3825174.chain_619	3	STRG.19684.2	1
scaffold_17	starts_in_intron	2536907	2536907	-	asmbl_17761	none	blat.proc3825158.chain_1076	1	STRG.20049.1,STRG.20049.3,blat.proc3825158.chain_1071,blat.proc3825158.chain_1072	4
scaffold_8	starts_in_intron	10214862	10214862	+	asmbl_53157	none	Trinity_GG_22969_c0_g1_i2,blat.proc3825168.chain_2738	2	STRG.10275.1,blat.proc3825168.chain_2737	2
scaffold_28	retained_intron	7234745	7235090	+	asmbl_37642	none	STRG.29785.2,Trinity_GG_33804_c1_g1_i1,blat.proc3825178.chain_2931,blat.proc3825178.chain_2933	4	blat.proc3825178.chain_2932	1
scaffold_14	alt_donor	208046	208047	-	asmbl_12797,asmbl_12804	none	STRG.16713.4,blat.proc3825156.chain_1540	2	STRG.16713.1,STRG.16713.2,blat.proc3825156.chain_1541,blat.proc3825156.chain_1542	4
scaffold_22	alt_donor	10044902	10044903	-	asmbl_29578	none	STRG.25357.4	1	STRG.25357.1,STRG.25357.2	2
scaffold_3	retained_intron	5159772	5159888	-	asmbl_38837	none	Trinity_GG_1751_c0_g2_i1,blat.proc3825148.chain_3084	2	STRG.3215.1	1
scaffold_10	starts_in_intron	1627339	1627339	-	asmbl_4069	none	blat.proc3825154.chain_508	1	STRG.12027.1,blat.proc3825154.chain_509,blat.proc3825154.chain_510	3
scaffold_7	spliced_intron	12270450	12271072	+	asmbl_50231	none	STRG.9326.3,Trinity_GG_22467_c0_g1_i1,Trinity_GG_22467_c0_g1_i3,blat.proc3825168.chain_1802	4	STRG.9326.5,blat.proc3825168.chain_1801	2
scaffold_27	starts_in_intron	3022097	3022097	+	asmbl_36164,asmbl_36170	none	Trinity_GG_33210_c0_g1_i12,blat.proc3825178.chain_1870,blat.proc3825178.chain_1871	3	STRG.28790.1,STRG.28790.2,blat.proc3825178.chain_1868,blat.proc3825178.chain_1872,blat.proc3825178.chain_1873	5
scaffold_22	ends_in_intron	7376805	7376805	-	asmbl_29391	none	Trinity_GG_13977_c0_g1_i1,blat.proc3825160.chain_2194	2	STRG.25069.1	1
scaffold_13	alt_donor	15519346	15519347	+	asmbl_11517	none	STRG.16596.1	1	STRG.16596.2	1
scaffold_1	starts_in_intron	14075462	14075462	+	asmbl_2331	none	STRG.1003.2	1	STRG.1003.1,Trinity_GG_17903_c0_g1_i3,Trinity_GG_17903_c0_g1_i4,blat.proc3825164.chain_1136,blat.proc3825164.chain_1137,blat.proc3825164.chain_1138,blat.proc3825164.chain_1139	7
scaffold_1	alternate_exon	36169	44086	-	asmbl_2,asmbl_8	none	STRG.11.1,blat.proc3825148.chain_63,blat.proc3825148.chain_64	3	blat.proc3825148.chain_62	1
scaffold_3	retained_intron	800441	800585	-	asmbl_38675	none	STRG.2908.4,Trinity_GG_1570_c0_g1_i2,blat.proc3825148.chain_2793	3	STRG.2908.1,STRG.2908.2,blat.proc3825148.chain_2794,blat.proc3825148.chain_2795	4
scaffold_28	ends_in_intron	233505	233505	+	asmbl_37256	none	blat.proc3825178.chain_2486	1	STRG.29253.1,STRG.29253.2,blat.proc3825178.chain_2480,blat.proc3825178.chain_2481,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483	6
scaffold_18	alternate_exon	5909316	5909397	+	asmbl_20617	none	STRG.21344.1,Trinity_GG_29070_c0_g1_i1,blat.proc3825174.chain_2324	3	STRG.21344.2,blat.proc3825174.chain_2322	2
scaffold_1	retained_intron	11678500	11678600	+	asmbl_2128	none	blat.proc3825164.chain_836	1	STRG.778.1	1
scaffold_28	ends_in_intron	1566115	1566115	+	asmbl_37308	none	blat.proc3825178.chain_2504	1	STRG.29340.2	1
scaffold_10	alternate_exon	9337118	9337227	+	asmbl_3370	none	STRG.12665.2	1	STRG.12665.1,Trinity_GG_24288_c0_g1_i1	2
scaffold_24	spliced_intron	2462777	2462837	-	asmbl_32787	none	STRG.26472.1,blat.proc3825160.chain_3592	2	Trinity_GG_14799_c0_g1_i1,blat.proc3825160.chain_3591	2
scaffold_1	alt_acceptor	14615305	14615306	+	asmbl_2405	none	STRG.1072.1,blat.proc3825164.chain_1142	2	STRG.1072.2	1
scaffold_9	alt_acceptor	11019728	11019729	-	asmbl_55265,asmbl_55267	none	STRG.11409.2,blat.proc3825152.chain_3517	2	STRG.11409.1,blat.proc3825152.chain_3516,blat.proc3825152.chain_3518	3
scaffold_12	retained_intron	15094938	15096253	-	asmbl_9045	none	STRG.15320.1,Trinity_GG_8545_c1_g1_i2,blat.proc3825156.chain_52	3	Trinity_GG_8545_c1_g1_i6,blat.proc3825156.chain_51	2
scaffold_20	ends_in_intron	2079071	2079071	-	asmbl_25633	none	blat.proc3825158.chain_3703	1	STRG.22944.1,Trinity_GG_12755_c0_g1_i3,blat.proc3825158.chain_3702,blat.proc3825158.chain_3704	4
scaffold_23	retained_exon	2209153	2209242	-	asmbl_30712,asmbl_30713	none	STRG.25698.2,STRG.25698.5	2	STRG.25698.1	1
scaffold_6	retained_intron	3065689	3066024	+	asmbl_46808	none	STRG.7321.3,blat.proc3825166.chain_3514	2	STRG.7321.1,STRG.7321.2,blat.proc3825166.chain_3512,blat.proc3825166.chain_3513	4
scaffold_15	ends_in_intron	9573542	9573542	-	asmbl_14385	none	Trinity_GG_10357_c1_g1_i1,blat.proc3825156.chain_3279	2	STRG.18476.1,blat.proc3825156.chain_3280,blat.proc3825156.chain_3281	3
scaffold_12	spliced_intron	12291139	12292234	-	asmbl_8856,asmbl_8858	none	STRG.15130.3,STRG.15130.5	2	STRG.15130.2,STRG.15130.4,Trinity_GG_8430_c0_g1_i4,Trinity_GG_8430_c1_g1_i1,blat.proc3825154.chain_3608,blat.proc3825154.chain_3609	6
scaffold_6	retained_intron	8645146	8645230	-	asmbl_48581	none	STRG.7755.2	1	STRG.7755.1,blat.proc3825152.chain_121	2
scaffold_25	alt_acceptor	4820533	4820534	+	asmbl_33536,asmbl_33538	none	STRG.27418.1,Trinity_GG_32399_c0_g1_i2,blat.proc3825178.chain_470	3	STRG.27418.2,STRG.27418.3,Trinity_GG_32399_c0_g1_i1,blat.proc3825178.chain_471	4
scaffold_10	starts_in_intron	13771335	13771335	-	asmbl_4927	none	blat.proc3825154.chain_1612	1	STRG.12971.1,blat.proc3825154.chain_1610,blat.proc3825154.chain_1611	3
scaffold_15	alt_donor	2782676	2782677	-	asmbl_14050	none	STRG.18069.3	1	STRG.18069.2,blat.proc3825156.chain_2898	2
scaffold_6	skipped_exon	12477780	12479147	+	asmbl_47401,asmbl_47402	none	blat.proc3825168.chain_473,blat.proc3825168.chain_475	2	STRG.8006.1,STRG.8006.2,STRG.8006.3,STRG.8006.4,blat.proc3825168.chain_472,blat.proc3825168.chain_474,blat.proc3825168.chain_477	7
scaffold_17	alt_acceptor	11037508	11037509	-	asmbl_18258	none	STRG.20664.7,blat.proc3825158.chain_1653	2	STRG.20664.4,STRG.20664.5,STRG.20664.6,blat.proc3825158.chain_1650,blat.proc3825158.chain_1651	5
scaffold_7	starts_in_intron	118242	118242	-	asmbl_50663,asmbl_50668	none	STRG.8595.3,Trinity_GG_4930_c1_g1_i2,blat.proc3825152.chain_1101,blat.proc3825152.chain_1103	4	STRG.8595.1,STRG.8595.2,STRG.8595.5,STRG.8595.7	4
scaffold_5	alt_donor	15044156	15044157	-	asmbl_44637	none	STRG.6698.5	1	STRG.6698.2,STRG.6698.3,STRG.6698.4,Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2827	5
scaffold_3	spliced_intron	13702911	13703499	+	asmbl_40448,asmbl_40450	none	STRG.3717.1,STRG.3717.4,Trinity_GG_19399_c0_g1_i2,blat.proc3825166.chain_217,blat.proc3825166.chain_222	5	STRG.3717.3,blat.proc3825166.chain_219,blat.proc3825166.chain_220,blat.proc3825166.chain_223	4
scaffold_10	ends_in_intron	975291	975291	-	asmbl_4021	none	Trinity_GG_6637_c0_g1_i4,blat.proc3825154.chain_472	2	STRG.11979.2,Trinity_GG_6637_c0_g1_i3	2
scaffold_28	starts_in_intron	7531846	7531846	+	asmbl_37693	none	Trinity_GG_33836_c0_g1_i3	1	STRG.29834.1,blat.proc3825178.chain_2986,blat.proc3825178.chain_2990	3
scaffold_9	spliced_intron	8395341	8395484	+	asmbl_54172	none	STRG.11261.4	1	STRG.11261.1,STRG.11261.2,blat.proc3825170.chain_58,blat.proc3825170.chain_61	4
scaffold_25	retained_intron	5158255	5158408	-	asmbl_34247	none	blat.proc3825162.chain_805	1	STRG.27443.2,blat.proc3825162.chain_809	2
scaffold_1	alt_donor	4864319	4864320	-	asmbl_219	none	blat.proc3825148.chain_257	1	STRG.292.1,blat.proc3825148.chain_258	2
scaffold_15	spliced_intron	4117365	4117553	-	asmbl_14123,asmbl_14124,asmbl_14127	none	STRG.18155.1,STRG.18155.2,STRG.18155.4,blat.proc3825156.chain_2938,blat.proc3825156.chain_2939	5	STRG.18155.3,Trinity_GG_10180_c0_g1_i1,blat.proc3825156.chain_2940	3
scaffold_14	starts_in_intron	13600617	13600617	+	asmbl_12486	none	Trinity_GG_26967_c1_g1_i1,blat.proc3825172.chain_2303	2	STRG.17648.1,STRG.17648.2,blat.proc3825172.chain_2301,blat.proc3825172.chain_2302	4
scaffold_6	starts_in_intron	12088363	12088363	-	asmbl_48792,asmbl_48794	none	STRG.7983.2,blat.proc3825152.chain_367	2	STRG.7983.1,blat.proc3825152.chain_366	2
scaffold_6	spliced_intron	7516477	7516579	-	asmbl_48497	none	STRG.7655.1,blat.proc3825152.chain_13	2	STRG.7655.2,blat.proc3825152.chain_15	2
scaffold_7	alternate_exon	11151411	11152604	+	asmbl_50158	none	STRG.9261.2	1	STRG.9261.1,Trinity_GG_22446_c0_g1_i1,blat.proc3825168.chain_1756	3
scaffold_21	retained_intron	5537513	5537636	-	asmbl_27673,asmbl_27674	none	STRG.24086.2,blat.proc3825160.chain_1271,blat.proc3825160.chain_1277	3	STRG.24086.1,blat.proc3825160.chain_1275	2
scaffold_21	starts_in_intron	6535326	6535326	+	asmbl_28665,asmbl_28666	none	blat.proc3825176.chain_1392,blat.proc3825176.chain_1393	2	STRG.24178.1,STRG.24178.2,blat.proc3825176.chain_1391	3
scaffold_1	spliced_intron	12407161	12407709	+	asmbl_2208,asmbl_2209	none	STRG.856.1,STRG.856.2,Trinity_GG_17800_c0_g1_i1,Trinity_GG_17800_c0_g1_i2,Trinity_GG_17800_c0_g1_i3,blat.proc3825164.chain_943,blat.proc3825164.chain_944,blat.proc3825164.chain_946	8	Trinity_GG_17800_c0_g1_i5,blat.proc3825164.chain_945	2
scaffold_4	spliced_intron	5183708	5183825	-	asmbl_42562,asmbl_42563,asmbl_42564	none	STRG.4410.1,STRG.4410.2,STRG.4410.3,blat.proc3825150.chain_643,blat.proc3825150.chain_644	5	STRG.4410.4,Trinity_GG_2468_c0_g1_i3,blat.proc3825150.chain_642	3
scaffold_1	starts_in_intron	13462235	13462235	-	asmbl_810	none	blat.proc3825148.chain_940	1	STRG.961.1,Trinity_GG_498_c1_g1_i1,blat.proc3825148.chain_941	3
scaffold_21	retained_intron	730676	730999	+	asmbl_28290	none	STRG.23764.3,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_971	3	STRG.23764.4	1
scaffold_14	skipped_exon	4153501	4154454	+	asmbl_11979,asmbl_11980	none	STRG.16971.1,STRG.16971.3	2	STRG.16971.2	1
scaffold_11	alt_acceptor	8078322	8078323	-	asmbl_6827,asmbl_6835	none	STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2330	4	STRG.13815.1,STRG.13815.2,STRG.13815.3,Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i5,Trinity_GG_7709_c0_g1_i6,Trinity_GG_7709_c0_g1_i8,blat.proc3825154.chain_2326,blat.proc3825154.chain_2328,blat.proc3825154.chain_2329,blat.proc3825154.chain_2331,blat.proc3825154.chain_2332,blat.proc3825154.chain_2333	15
scaffold_8	spliced_intron	5314598	5314889	-	asmbl_51832	none	STRG.9970.2,blat.proc3825152.chain_2165	2	STRG.9970.1,Trinity_GG_5527_c0_g1_i1,blat.proc3825152.chain_2164	3
scaffold_1	alt_acceptor	9176403	9176404	-	asmbl_523	none	STRG.608.2	1	STRG.608.1,blat.proc3825148.chain_610	2
scaffold_24	skipped_exon	6831669	6833623	+	asmbl_32348	none	STRG.26736.4	1	STRG.26736.1,STRG.26736.2,blat.proc3825176.chain_3729,blat.proc3825176.chain_3730,blat.proc3825176.chain_3732,blat.proc3825176.chain_3734	6
scaffold_15	spliced_intron	12000429	12000658	-	asmbl_14546,asmbl_14547,asmbl_14552	none	STRG.18639.2,STRG.18639.3,STRG.18639.6,Trinity_GG_10485_c0_g1_i3,Trinity_GG_10485_c0_g1_i6,blat.proc3825156.chain_3529,blat.proc3825156.chain_3531	7	Trinity_GG_10485_c0_g1_i4,blat.proc3825156.chain_3532,blat.proc3825156.chain_3533	3
scaffold_1	starts_in_intron	12913908	12913908	+	asmbl_2274	none	STRG.922.2	1	STRG.922.1,blat.proc3825164.chain_1116,blat.proc3825164.chain_1118	3
scaffold_1	retained_intron	12745383	12745532	-	asmbl_750,asmbl_754	none	STRG.895.2,STRG.895.4,blat.proc3825148.chain_849	3	STRG.895.3,blat.proc3825148.chain_851	2
scaffold_27	alternate_exon	5682566	5686898	+	asmbl_36360	none	blat.proc3825178.chain_2114	1	STRG.28977.2,blat.proc3825178.chain_2112	2
scaffold_1	retained_intron	4864196	4864320	-	asmbl_218	none	STRG.292.2,blat.proc3825148.chain_256	2	blat.proc3825148.chain_257	1
scaffold_15	spliced_intron	14324311	14324883	-	asmbl_14719	none	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2	Trinity_GG_10597_c0_g1_i3,Trinity_GG_10597_c0_g1_i4,Trinity_GG_10597_c0_g1_i8,blat.proc3825156.chain_3715,blat.proc3825156.chain_3718	5
scaffold_1	alternate_exon	14363969	14364252	-	asmbl_906	none	STRG.1037.4,blat.proc3825148.chain_1030	2	STRG.1037.3	1
scaffold_3	alt_acceptor	19407196	19407197	-	asmbl_39650,asmbl_39653	none	STRG.4086.5,blat.proc3825150.chain_252	2	blat.proc3825150.chain_251	1
scaffold_22	spliced_intron	9647011	9647213	+	asmbl_30309	none	STRG.25303.2,Trinity_GG_31256_c0_g1_i3,blat.proc3825176.chain_2307	3	STRG.25303.1	1
scaffold_24	ends_in_intron	9953160	9953160	-	asmbl_33163	none	blat.proc3825162.chain_271	1	STRG.26968.1,STRG.26968.2,STRG.26968.6,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	8
scaffold_25	starts_in_intron	8506206	8506206	-	asmbl_34452	none	blat.proc3825162.chain_1007	1	STRG.27688.1	1
scaffold_2	retained_intron	4599512	4599633	+	asmbl_24371	none	STRG.1885.2	1	STRG.1885.1,blat.proc3825164.chain_1944	2
scaffold_24	retained_intron	727022	727258	-	asmbl_32707	none	Trinity_GG_14732_c0_g1_i2,blat.proc3825160.chain_3475	2	STRG.26355.1,Trinity_GG_14732_c0_g1_i1,Trinity_GG_14732_c0_g1_i3,blat.proc3825160.chain_3473,blat.proc3825160.chain_3474	5
scaffold_8	spliced_intron	5433842	5433940	+	asmbl_52884,asmbl_52885,asmbl_52887	none	STRG.9974.1,STRG.9974.2,blat.proc3825168.chain_2430,blat.proc3825168.chain_2432	4	blat.proc3825168.chain_2431	1
scaffold_4	retained_exon	3441462	3441542	-	asmbl_42444	none	STRG.4272.1,blat.proc3825150.chain_497	2	STRG.4272.2,blat.proc3825150.chain_498	2
scaffold_8	skipped_exon	9936478	9937030	-	asmbl_52079	none	STRG.10247.2	1	STRG.10247.1,blat.proc3825152.chain_2520,blat.proc3825152.chain_2521	3
scaffold_1	spliced_intron	20460128	20460181	+	asmbl_2634	none	STRG.1400.4	1	STRG.1400.1	1
scaffold_8	spliced_intron	8607259	8607362	-	asmbl_51965	none	STRG.10123.1,blat.proc3825152.chain_2393	2	blat.proc3825152.chain_2395	1
scaffold_15	starts_in_intron	11875149	11875149	+	asmbl_15508	none	blat.proc3825172.chain_3272	1	STRG.18633.1,blat.proc3825172.chain_3273	2
scaffold_5	alt_acceptor	5846395	5846396	-	asmbl_44061	none	STRG.5999.1	1	STRG.5999.2	1
scaffold_13	retained_intron	14174926	14175211	+	asmbl_11431,asmbl_11433	none	STRG.16460.4,Trinity_GG_26388_c0_g1_i1,Trinity_GG_26388_c0_g1_i6,Trinity_GG_26388_c0_g1_i8,blat.proc3825172.chain_1265,blat.proc3825172.chain_1267,blat.proc3825172.chain_1268	7	STRG.16460.2,STRG.16460.5,Trinity_GG_26388_c0_g1_i7,blat.proc3825172.chain_1269	4
scaffold_15	retained_intron	15355271	15355388	+	asmbl_15756,asmbl_15757,asmbl_15758,asmbl_15759,asmbl_15761,asmbl_15762	none	STRG.18922.1,STRG.18922.3,Trinity_GG_27686_c0_g1_i4,Trinity_GG_27686_c0_g1_i7,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3561,blat.proc3825172.chain_3564,blat.proc3825172.chain_3565,blat.proc3825172.chain_3566	10	STRG.18922.2,blat.proc3825172.chain_3562	2
scaffold_21	alternate_exon	5374587	5374633	-	asmbl_27650	none	blat.proc3825160.chain_1216	1	STRG.24070.1,blat.proc3825160.chain_1217	2
scaffold_2	alternate_exon	19885959	19886522	-	asmbl_23875	none	STRG.2835.2,blat.proc3825148.chain_2778	2	STRG.2835.1,blat.proc3825148.chain_2777	2
scaffold_14	retained_intron	9272764	9273523	-	asmbl_13365,asmbl_13367	none	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203	2	STRG.17338.1,STRG.17338.2,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204	6
scaffold_1	ends_in_intron	7283824	7283824	-	asmbl_425	none	STRG.519.3,blat.proc3825148.chain_448	2	STRG.519.2,blat.proc3825148.chain_446	2
scaffold_10	alternate_exon	1175351	1175465	+	asmbl_2919	none	blat.proc3825170.chain_769	1	STRG.12009.1,blat.proc3825170.chain_768	2
scaffold_15	spliced_intron	9730449	9730698	-	asmbl_14404,asmbl_14405,asmbl_14408,asmbl_14409	none	STRG.18492.1,STRG.18492.2,STRG.18492.3,STRG.18492.4,Trinity_GG_10360_c0_g1_i2,blat.proc3825156.chain_3289,blat.proc3825156.chain_3291	7	blat.proc3825156.chain_3290	1
scaffold_26	retained_intron	9853517	9853606	+	asmbl_35278,asmbl_35279,asmbl_35285,asmbl_35287,asmbl_35288,asmbl_35289,asmbl_35290	none	STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1574,blat.proc3825178.chain_1576,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	9	STRG.28546.1,blat.proc3825178.chain_1573,blat.proc3825178.chain_1575,blat.proc3825178.chain_1577	4
scaffold_4	alt_acceptor	6343095	6343096	+	asmbl_41402	none	STRG.4504.2	1	STRG.4504.1,blat.proc3825166.chain_949	2
scaffold_28	spliced_intron	3730685	3731676	-	asmbl_38162,asmbl_38163,asmbl_38169,asmbl_38170	none	blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2738	4	STRG.29587.1,STRG.29587.2,STRG.29587.3,STRG.29587.4,blat.proc3825162.chain_2733,blat.proc3825162.chain_2737,blat.proc3825162.chain_2739	7
scaffold_15	spliced_intron	15914237	15914412	+	asmbl_15842,asmbl_15846	none	STRG.18976.1,Trinity_GG_27681_c0_g1_i1,blat.proc3825172.chain_3549	3	Trinity_GG_27681_c0_g1_i2,blat.proc3825172.chain_3550	2
scaffold_12	spliced_intron	10187619	10188527	-	asmbl_8731,asmbl_8735,asmbl_8738	none	STRG.14994.1,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516	4	blat.proc3825154.chain_3519	1
scaffold_13	alternate_exon	2992659	2992721	+	asmbl_10648	none	STRG.15606.3	1	STRG.15606.1,STRG.15606.2,blat.proc3825172.chain_367	3
scaffold_16	starts_in_intron	8907691	8907691	+	asmbl_16452	none	blat.proc3825174.chain_424	1	STRG.19511.1	1
scaffold_2	spliced_intron	861757	861958	+	asmbl_24113,asmbl_24114,asmbl_24116	none	STRG.1562.1,STRG.1562.2,STRG.1562.3,blat.proc3825164.chain_1700	4	blat.proc3825164.chain_1703	1
scaffold_26	alt_donor	4141762	4141763	+	asmbl_34871,asmbl_34872,asmbl_34874	none	STRG.28122.1,STRG.28122.2,STRG.28122.3	3	STRG.28122.4	1
scaffold_21	retained_intron	5979198	5979219	-	asmbl_27713,asmbl_27714	none	STRG.24137.2,STRG.24137.3	2	STRG.24137.1	1
scaffold_19	alt_donor	752111	752112	-	asmbl_22003	none	STRG.21859.1,blat.proc3825158.chain_2700	2	Trinity_GG_12190_c0_g1_i1,blat.proc3825158.chain_2701	2
scaffold_28	retained_exon	3321404	3321493	+	asmbl_37474	none	STRG.29549.2	1	STRG.29549.1,blat.proc3825178.chain_2736	2
scaffold_10	retained_exon	9003657	9003692	+	asmbl_3351,asmbl_3352	none	STRG.12646.1,STRG.12646.2,blat.proc3825170.chain_1215,blat.proc3825170.chain_1216	4	STRG.12646.3,STRG.12646.4	2
scaffold_22	alternate_exon	9039981	9040064	-	asmbl_29510	none	STRG.25238.2,Trinity_GG_14123_c0_g1_i1,blat.proc3825160.chain_2410	3	STRG.25238.1	1
scaffold_2	retained_intron	13397328	13397546	+	asmbl_24841,asmbl_24844,asmbl_24846	none	STRG.2359.1,Trinity_GG_18642_c0_g1_i2,blat.proc3825164.chain_2561,blat.proc3825164.chain_2563,blat.proc3825164.chain_2564	5	STRG.2359.2,STRG.2359.3,blat.proc3825164.chain_2560,blat.proc3825164.chain_2562	4
scaffold_2	alt_acceptor	17973657	17973658	+	asmbl_25210,asmbl_25211	none	blat.proc3825164.chain_2963,blat.proc3825164.chain_2964	2	STRG.2689.1,STRG.2689.2,blat.proc3825164.chain_2961,blat.proc3825164.chain_2962	4
scaffold_8	retained_intron	11854269	11855193	+	asmbl_53285	none	Trinity_GG_23130_c0_g1_i12,blat.proc3825168.chain_3017	2	STRG.10390.2,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3026	4
scaffold_3	alternate_exon	15574497	15574704	+	asmbl_40567	none	STRG.3847.3,blat.proc3825166.chain_330	2	STRG.3847.1,blat.proc3825166.chain_327,blat.proc3825166.chain_328,blat.proc3825166.chain_329	4
scaffold_21	alternate_exon	3169441	3169834	+	asmbl_28460	none	STRG.23959.7,blat.proc3825176.chain_1144	2	STRG.23959.3,STRG.23959.5,blat.proc3825176.chain_1133	3
scaffold_18	alt_acceptor	12935886	12935887	+	asmbl_20983,asmbl_20984	none	STRG.21740.4,blat.proc3825158.chain_2618	2	STRG.21740.1	1
scaffold_8	retained_intron	16505056	16505853	-	asmbl_52405,asmbl_52413	none	STRG.10629.6,blat.proc3825152.chain_2931	2	STRG.10629.1,STRG.10629.4,blat.proc3825152.chain_2929,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	7
scaffold_21	alt_acceptor	1061956	1061957	+	asmbl_28323,asmbl_28324	none	STRG.23785.1,STRG.23785.3,Trinity_GG_30443_c0_g1_i1,blat.proc3825176.chain_920,blat.proc3825176.chain_921	5	STRG.23785.2	1
scaffold_28	spliced_intron	5230739	5230823	-	asmbl_38261	none	Trinity_GG_16632_c0_g1_i9,blat.proc3825162.chain_2849	2	STRG.29674.2	1
scaffold_10	ends_in_intron	548030	548030	-	asmbl_3962,asmbl_3963	none	STRG.11936.2,STRG.11936.3,Trinity_GG_6600_c0_g1_i3,Trinity_GG_6600_c0_g1_i5,blat.proc3825154.chain_401,blat.proc3825154.chain_402	6	STRG.11936.1	1
scaffold_6	starts_in_intron	13155440	13155440	+	asmbl_47477	none	STRG.8072.2,blat.proc3825168.chain_583	2	STRG.8072.1	1
scaffold_21	skipped_exon	3824094	3826309	-	asmbl_27547,asmbl_27550	none	STRG.23974.1,blat.proc3825160.chain_1115,blat.proc3825160.chain_1117	3	STRG.23974.4,blat.proc3825160.chain_1118	2
scaffold_10	retained_intron	5390028	5390517	+	asmbl_3168	none	Trinity_GG_24154_c0_g1_i2,blat.proc3825170.chain_1034	2	STRG.12365.2,blat.proc3825170.chain_1032	2
scaffold_4	starts_in_intron	4087239	4087239	-	asmbl_42475	none	STRG.4314.1,Trinity_GG_2407_c0_g1_i1,blat.proc3825150.chain_542	3	STRG.4314.2,Trinity_GG_2407_c0_g1_i3,blat.proc3825150.chain_541	3
scaffold_9	retained_exon	16560404	16560430	-	asmbl_55583	none	STRG.11806.5	1	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7
scaffold_5	spliced_intron	9085614	9085705	+	asmbl_45599,asmbl_45600,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45606,asmbl_45607	none	STRG.6247.1,STRG.6247.2,Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2475,blat.proc3825166.chain_2476,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2480,blat.proc3825166.chain_2481	9	blat.proc3825166.chain_2474	1
scaffold_2	skipped_exon	7469822	7471000	-	asmbl_23260	none	STRG.2074.2,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057	3	STRG.2074.3,blat.proc3825148.chain_2064	2
scaffold_10	skipped_exon	7796671	7799332	-	asmbl_4557	none	STRG.12566.3	1	STRG.12566.1,STRG.12566.2,blat.proc3825154.chain_1154,blat.proc3825154.chain_1155	4
scaffold_3	skipped_exon	13176718	13177541	+	asmbl_40436	none	STRG.3682.1	1	blat.proc3825166.chain_165,blat.proc3825166.chain_166	2
scaffold_4	ends_in_intron	16502375	16502375	-	asmbl_43186	none	blat.proc3825150.chain_1410	1	STRG.5228.1,blat.proc3825150.chain_1411,blat.proc3825150.chain_1412	3
scaffold_5	retained_intron	14568812	14568989	-	asmbl_44600	none	blat.proc3825150.chain_2783,blat.proc3825150.chain_2784	2	STRG.6658.1,STRG.6658.2,blat.proc3825150.chain_2785	3
scaffold_5	alt_acceptor	939477	939478	-	asmbl_43793	none	STRG.5640.3	1	STRG.5640.2	1
scaffold_4	retained_intron	4112610	4112829	-	asmbl_42483	none	blat.proc3825150.chain_475	1	STRG.4317.2,blat.proc3825150.chain_482	2
scaffold_3	starts_in_intron	2872434	2872434	+	asmbl_39924	none	Trinity_GG_19036_c0_g1_i2,blat.proc3825164.chain_3284	2	STRG.3047.1,blat.proc3825164.chain_3287	2
scaffold_3	ends_in_intron	13721040	13721040	-	asmbl_39295	none	Trinity_GG_2032_c0_g1_i2,blat.proc3825148.chain_3578	2	STRG.3718.1,STRG.3718.2,Trinity_GG_2032_c0_g1_i1,Trinity_GG_2032_c0_g1_i3,Trinity_GG_2032_c0_g1_i4,blat.proc3825148.chain_3576,blat.proc3825148.chain_3577,blat.proc3825148.chain_3579	8
scaffold_3	starts_in_intron	13989159	13989159	+	asmbl_40480	none	Trinity_GG_19386_c0_g2_i1,blat.proc3825166.chain_192	2	STRG.3744.1,STRG.3744.2,STRG.3744.3,STRG.3744.4,STRG.3744.5,Trinity_GG_19386_c0_g1_i2,blat.proc3825166.chain_189,blat.proc3825166.chain_190,blat.proc3825166.chain_191	9
scaffold_12	spliced_intron	12308782	12309134	+	asmbl_7984,asmbl_7986,asmbl_7987	none	STRG.15133.1,STRG.15133.2,STRG.15133.5,blat.proc3825170.chain_3640	4	STRG.15133.3,Trinity_GG_25650_c0_g1_i1,blat.proc3825170.chain_3642	3
scaffold_25	starts_in_intron	406560	406560	-	asmbl_33978	none	STRG.27086.2	1	STRG.27086.1	1
scaffold_7	ends_in_intron	5292911	5292911	+	asmbl_49807	none	Trinity_GG_22197_c0_g1_i2,blat.proc3825168.chain_1339	2	STRG.8867.1,blat.proc3825168.chain_1340	2
scaffold_6	alternate_exon	1740516	1740633	+	asmbl_46734	none	blat.proc3825150.chain_3229	1	blat.proc3825150.chain_3232	1
scaffold_14	alternate_exon	404838	404876	+	asmbl_11752,asmbl_11755	none	Trinity_GG_26526_c0_g1_i18,Trinity_GG_26526_c0_g1_i4,blat.proc3825172.chain_1503,blat.proc3825172.chain_1514	4	STRG.16734.3,STRG.16734.4,blat.proc3825172.chain_1508,blat.proc3825172.chain_1515	4
scaffold_12	retained_exon	14107535	14107552	-	asmbl_8975,asmbl_8982,asmbl_8983,asmbl_8984,asmbl_8985	none	STRG.15241.1,blat.proc3825156.chain_88,blat.proc3825156.chain_91,blat.proc3825156.chain_92,blat.proc3825156.chain_94,blat.proc3825156.chain_96	6	Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i4,Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_87,blat.proc3825156.chain_93,blat.proc3825156.chain_95,blat.proc3825156.chain_97	8
scaffold_8	spliced_intron	5968927	5969108	+	asmbl_52917,asmbl_52919	none	STRG.10007.1,blat.proc3825168.chain_2577,blat.proc3825168.chain_2579	3	blat.proc3825168.chain_2578	1
scaffold_18	retained_intron	4848613	4848998	+	asmbl_20567,asmbl_20570	none	STRG.21278.2,Trinity_GG_28997_c0_g1_i1,Trinity_GG_28997_c0_g1_i2,blat.proc3825174.chain_2171,blat.proc3825174.chain_2172	5	STRG.21278.1,Trinity_GG_28997_c0_g1_i4,blat.proc3825174.chain_2170	3
scaffold_25	ends_in_intron	5996028	5996028	-	asmbl_34301	none	Trinity_GG_15378_c1_g1_i1,blat.proc3825162.chain_790	2	STRG.27504.1,STRG.27504.2	2
scaffold_18	spliced_intron	3096365	3096617	-	asmbl_19745	none	STRG.21149.1	1	STRG.21149.2,blat.proc3825158.chain_2057	2
scaffold_6	ends_in_intron	15759643	15759643	-	asmbl_49083	none	blat.proc3825152.chain_760	1	STRG.8318.1,blat.proc3825152.chain_757,blat.proc3825152.chain_758,blat.proc3825152.chain_759	4
scaffold_21	alternate_exon	11266237	11272093	-	asmbl_28112	none	Trinity_GG_13770_c0_g1_i2,blat.proc3825160.chain_1824,blat.proc3825160.chain_1825,blat.proc3825160.chain_1828	4	STRG.24607.4	1
scaffold_19	alt_acceptor	12398769	12398770	-	asmbl_22479,asmbl_22481	none	STRG.22570.1,blat.proc3825158.chain_3326,blat.proc3825158.chain_3330	3	STRG.22570.2,STRG.22570.3,blat.proc3825158.chain_3327,blat.proc3825158.chain_3328,blat.proc3825158.chain_3329	5
scaffold_23	alt_acceptor	1136535	1136536	-	asmbl_30627,asmbl_30630,asmbl_30631	none	STRG.25596.1,blat.proc3825160.chain_2732,blat.proc3825160.chain_2733,blat.proc3825160.chain_2734	4	STRG.25596.2,blat.proc3825160.chain_2731	2
scaffold_12	retained_intron	4783952	4784097	-	asmbl_8447,asmbl_8455,asmbl_8456,asmbl_8457	none	STRG.14660.3,blat.proc3825154.chain_3150,blat.proc3825154.chain_3151,blat.proc3825154.chain_3153	4	STRG.14660.1,STRG.14660.2,STRG.14660.4,blat.proc3825154.chain_3145,blat.proc3825154.chain_3147,blat.proc3825154.chain_3148,blat.proc3825154.chain_3152	7
scaffold_13	spliced_intron	7991437	7991929	-	asmbl_9926	none	STRG.16080.1,blat.proc3825156.chain_968,blat.proc3825156.chain_972,blat.proc3825156.chain_973	4	STRG.16080.2,STRG.16080.3,blat.proc3825156.chain_970,blat.proc3825156.chain_971,blat.proc3825156.chain_975	5
scaffold_15	retained_intron	14324311	14324883	-	asmbl_14711,asmbl_14712,asmbl_14718	none	Trinity_GG_10597_c0_g1_i3,Trinity_GG_10597_c0_g1_i4,Trinity_GG_10597_c0_g1_i8,blat.proc3825156.chain_3715,blat.proc3825156.chain_3718	5	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2
scaffold_15	retained_intron	8828920	8829390	+	asmbl_15359	none	Trinity_GG_27426_c0_g1_i1,blat.proc3825172.chain_3104	2	STRG.18428.1,blat.proc3825172.chain_3102,blat.proc3825172.chain_3103,blat.proc3825172.chain_3105	4
scaffold_2	retained_exon	893276	893361	+	asmbl_24138	none	STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725	3	STRG.1566.1,STRG.1566.2,STRG.1566.3,STRG.1566.4,Trinity_GG_18212_c0_g2_i7,blat.proc3825164.chain_1726,blat.proc3825164.chain_1727,blat.proc3825164.chain_1728,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730,blat.proc3825164.chain_1731	11
scaffold_15	skipped_exon	4757848	4758609	-	asmbl_14155	none	STRG.18192.2	1	STRG.18192.1,blat.proc3825156.chain_3023	2
scaffold_21	alt_donor	7816517	7816518	-	asmbl_27858	none	STRG.24318.1,blat.proc3825160.chain_1359	2	STRG.24318.2	1
scaffold_20	ends_in_intron	10132563	10132563	+	asmbl_26934	none	STRG.23557.1,Trinity_GG_30337_c0_g1_i3,blat.proc3825176.chain_728	3	STRG.23557.2,blat.proc3825176.chain_727	2
scaffold_8	alt_donor	18249900	18249901	-	asmbl_52526,asmbl_52530,asmbl_52531	none	STRG.10728.1,STRG.10728.2,blat.proc3825152.chain_3017,blat.proc3825152.chain_3019	4	STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3018	5
scaffold_21	retained_exon	691873	692016	+	asmbl_28282,asmbl_28284	none	STRG.23756.2,STRG.23756.3,Trinity_GG_30469_c0_g1_i1	3	STRG.23756.1,STRG.23756.4	2
scaffold_14	retained_exon	2375413	2375442	-	asmbl_12935,asmbl_12937,asmbl_12939,asmbl_12941	none	STRG.16854.2,STRG.16854.3,STRG.16854.4,STRG.16854.6	4	STRG.16854.5,STRG.16854.7	2
scaffold_9	spliced_intron	13278982	13279273	+	asmbl_54492,asmbl_54493	none	STRG.11625.2,blat.proc3825170.chain_416	2	STRG.11625.1,blat.proc3825170.chain_417	2
scaffold_2	alternate_exon	879430	880159	+	asmbl_24120	none	blat.proc3825164.chain_1707	1	STRG.1563.2	1
scaffold_8	starts_in_intron	5310291	5310291	-	asmbl_51829	none	Trinity_GG_5526_c0_g1_i1,blat.proc3825152.chain_2163	2	STRG.9969.1	1
scaffold_15	alt_donor	12781104	12781105	+	asmbl_15606	none	STRG.18730.1,blat.proc3825172.chain_3398	2	STRG.18730.2,blat.proc3825172.chain_3399	2
scaffold_8	starts_in_intron	1344830	1344830	+	asmbl_52688	none	Trinity_GG_22684_c0_g1_i1,blat.proc3825168.chain_2212	2	STRG.9765.1	1
scaffold_18	spliced_intron	1382022	1382102	-	asmbl_19613,asmbl_19614	none	STRG.21024.1,STRG.21024.2,blat.proc3825158.chain_1981,blat.proc3825158.chain_1982	4	blat.proc3825158.chain_1983	1
scaffold_19	spliced_intron	2785763	2785796	-	asmbl_22067	none	STRG.21965.2	1	STRG.21965.1,Trinity_GG_12253_c0_g1_i1	2
scaffold_15	alt_donor	12421366	12421367	+	asmbl_15564	none	STRG.18696.2	1	blat.proc3825172.chain_3326	1
scaffold_25	starts_in_intron	1895455	1895455	-	asmbl_34051	none	blat.proc3825162.chain_603	1	STRG.27200.2,blat.proc3825162.chain_601	2
scaffold_22	alt_acceptor	10321918	10321919	+	asmbl_30353,asmbl_30356	none	STRG.25386.2,blat.proc3825176.chain_2361	2	STRG.25386.1	1
scaffold_8	retained_intron	16619457	16619609	-	asmbl_52433	none	Trinity_GG_5912_c0_g1_i1,blat.proc3825152.chain_2889	2	STRG.10636.1,Trinity_GG_5912_c0_g1_i2,blat.proc3825152.chain_2888	3
scaffold_2	alternate_exon	2909223	2911270	-	asmbl_22945,asmbl_22946,asmbl_22949	none	STRG.1731.1,STRG.1731.2,blat.proc3825148.chain_1612,blat.proc3825148.chain_1614,blat.proc3825148.chain_1615	5	blat.proc3825148.chain_1611,blat.proc3825148.chain_1613	2
scaffold_15	spliced_intron	5144985	5145081	+	asmbl_15191,asmbl_15192	none	STRG.18222.1,blat.proc3825172.chain_2885,blat.proc3825172.chain_2887	3	blat.proc3825172.chain_2886	1
scaffold_11	retained_intron	174383	174536	+	asmbl_5268	none	blat.proc3825170.chain_1814	1	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1809,blat.proc3825170.chain_1810,blat.proc3825170.chain_1811,blat.proc3825170.chain_1813	6
scaffold_20	alternate_exon	6974887	6974932	+	asmbl_26689	none	STRG.23262.1	1	STRG.23262.2,blat.proc3825176.chain_446	2
scaffold_5	retained_intron	3935983	3936174	-	asmbl_43933	none	STRG.5863.2	1	STRG.5864.1	1
scaffold_19	alt_acceptor	5457763	5457764	-	asmbl_22163	none	STRG.22108.2	1	STRG.22108.1,blat.proc3825158.chain_2974,blat.proc3825158.chain_2975	3
scaffold_1	alt_acceptor	20687634	20687635	-	asmbl_1190	none	STRG.1410.1	1	blat.proc3825148.chain_1342	1
scaffold_12	skipped_exon	7540862	7541225	-	asmbl_8595,asmbl_8597	none	STRG.14835.1,blat.proc3825154.chain_3373,blat.proc3825154.chain_3374	3	STRG.14835.2,STRG.14835.3,blat.proc3825154.chain_3375	3
scaffold_9	spliced_intron	11843256	11843422	-	asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55333	none	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660	5	blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	4
scaffold_9	retained_intron	13278982	13279273	+	asmbl_54491	none	STRG.11625.1,blat.proc3825170.chain_417	2	STRG.11625.2,blat.proc3825170.chain_416	2
scaffold_11	spliced_intron	10322368	10322453	+	asmbl_5934	none	STRG.14041.1,blat.proc3825170.chain_2586	2	blat.proc3825170.chain_2585	1
scaffold_15	retained_exon	9667385	9667844	-	asmbl_14395	none	STRG.18477.3	1	STRG.18477.1,STRG.18477.2,blat.proc3825156.chain_3351	3
scaffold_10	retained_exon	5857534	5857609	-	asmbl_4399	none	blat.proc3825154.chain_983	1	STRG.12409.1,STRG.12409.2,STRG.12409.3,blat.proc3825154.chain_985	4
scaffold_2	alt_acceptor	16370287	16370288	+	asmbl_25128	none	blat.proc3825164.chain_2856	1	STRG.2571.1	1
scaffold_3	starts_in_intron	2208740	2208740	-	asmbl_38736	none	STRG.3026.2,blat.proc3825148.chain_2908	2	STRG.3026.1,blat.proc3825148.chain_2911	2
scaffold_3	alt_donor	16443803	16443804	+	asmbl_40622,asmbl_40624	none	STRG.3922.1,STRG.3922.2,blat.proc3825166.chain_403	3	STRG.3922.3	1
scaffold_18	ends_in_intron	8403550	8403550	+	asmbl_20833	none	blat.proc3825174.chain_2584	1	STRG.21513.1,STRG.21513.2,STRG.21513.3,STRG.21513.4,STRG.21513.5,STRG.21513.6,blat.proc3825174.chain_2580,blat.proc3825174.chain_2581,blat.proc3825174.chain_2582,blat.proc3825174.chain_2583	10
scaffold_2	ends_in_intron	7406664	7406664	-	asmbl_23258,asmbl_23259	none	STRG.2065.6,blat.proc3825148.chain_1984	2	STRG.2065.1,STRG.2065.3,STRG.2065.4,STRG.2065.5,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i4,Trinity_GG_1101_c0_g1_i5,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1982,blat.proc3825148.chain_1983,blat.proc3825148.chain_1985,blat.proc3825148.chain_1986	12
scaffold_21	alt_donor	7325181	7325182	-	asmbl_27796,asmbl_27797	none	STRG.24258.1,blat.proc3825160.chain_1403,blat.proc3825160.chain_1406	3	blat.proc3825160.chain_1405	1
scaffold_14	starts_in_intron	5598875	5598875	+	asmbl_12033	none	Trinity_GG_26703_c1_g1_i6,blat.proc3825172.chain_1825	2	STRG.17042.1,STRG.17042.2,blat.proc3825172.chain_1824,blat.proc3825172.chain_1828,blat.proc3825172.chain_1830	5
scaffold_1	alternate_exon	20732958	20733011	-	asmbl_1199	none	STRG.1417.3	1	STRG.1417.2,blat.proc3825148.chain_1393	2
scaffold_14	retained_exon	870397	870450	+	asmbl_11775,asmbl_11777,asmbl_11778	none	STRG.16759.1,STRG.16759.2,blat.proc3825172.chain_1525	3	STRG.16759.3	1
scaffold_19	ends_in_intron	13236737	13236737	-	asmbl_22613,asmbl_22614	none	blat.proc3825158.chain_3423,blat.proc3825158.chain_3426	2	STRG.22653.1,STRG.22653.2,blat.proc3825158.chain_3425,blat.proc3825158.chain_3427	4
scaffold_18	alt_acceptor	178172	178173	+	asmbl_20266,asmbl_20269	none	STRG.20973.3,Trinity_GG_28849_c0_g1_i5,blat.proc3825174.chain_1897,blat.proc3825174.chain_1899	4	STRG.20973.1,STRG.20973.2,Trinity_GG_28849_c0_g1_i6,blat.proc3825174.chain_1896,blat.proc3825174.chain_1898	5
scaffold_14	alt_donor	15565919	15565920	+	asmbl_12623	none	STRG.17796.3	1	blat.proc3825172.chain_2534	1
scaffold_1	alt_donor	5733864	5733865	+	asmbl_1766,asmbl_1767,asmbl_1768	none	STRG.389.1,blat.proc3825164.chain_505,blat.proc3825164.chain_506,blat.proc3825164.chain_508	4	STRG.389.2,blat.proc3825164.chain_509	2
scaffold_17	starts_in_intron	5271765	5271765	-	asmbl_17930	none	blat.proc3825158.chain_1249	1	STRG.20250.1,blat.proc3825158.chain_1250	2
scaffold_4	retained_intron	3383834	3383996	+	asmbl_41195	none	blat.proc3825166.chain_747	1	STRG.4276.2,blat.proc3825166.chain_748	2
scaffold_3	starts_in_intron	15764718	15764718	-	asmbl_39447	none	blat.proc3825150.chain_44	1	STRG.3852.1,blat.proc3825150.chain_43	2
scaffold_16	skipped_exon	8463013	8463581	+	asmbl_16392	none	STRG.19472.2	1	STRG.19472.1	1
scaffold_17	retained_intron	2566428	2566630	+	asmbl_18664	none	Trinity_GG_28293_c0_g2_i2,blat.proc3825174.chain_933	2	STRG.20057.2,STRG.20057.3,blat.proc3825174.chain_934	3
scaffold_10	alternate_exon	13646078	13646120	-	asmbl_4923	none	blat.proc3825154.chain_1596	1	STRG.12965.1,blat.proc3825154.chain_1595	2
scaffold_3	starts_in_intron	3244024	3244024	+	asmbl_39942	none	Trinity_GG_19083_c1_g1_i21,blat.proc3825164.chain_3392	2	STRG.3072.2,STRG.3072.3	2
scaffold_6	retained_intron	384396	384552	+	asmbl_46656	none	blat.proc3825166.chain_3259	1	STRG.7099.1,blat.proc3825166.chain_3258	2
scaffold_15	alt_donor	15339426	15339427	+	asmbl_15749	none	STRG.18918.2,Trinity_GG_27683_c0_g1_i2,blat.proc3825172.chain_3555	3	STRG.18918.1,Trinity_GG_27683_c0_g1_i1,blat.proc3825172.chain_3556	3
scaffold_14	retained_intron	9475827	9475918	+	asmbl_12285	none	STRG.17340.1,Trinity_GG_26857_c0_g1_i2,blat.proc3825172.chain_2107	3	STRG.17340.2,STRG.17340.3,Trinity_GG_26857_c0_g1_i1,blat.proc3825172.chain_2108	4
scaffold_3	alt_acceptor	3244368	3244369	+	asmbl_39943	none	STRG.3072.3	1	STRG.3072.2	1
scaffold_19	alt_acceptor	8820149	8820150	+	asmbl_21563	none	STRG.22335.1	1	STRG.22335.2,STRG.22335.4,blat.proc3825174.chain_3343	3
scaffold_5	alt_donor	16018648	16018649	-	asmbl_44741	none	blat.proc3825150.chain_2865	1	STRG.6788.2,Trinity_GG_3751_c0_g1_i4,blat.proc3825150.chain_2868	3
scaffold_3	alternate_exon	5683700	5684814	-	asmbl_38855	none	STRG.3234.2,blat.proc3825148.chain_3089	2	STRG.3234.1,Trinity_GG_1753_c0_g1_i1,blat.proc3825148.chain_3090	3
scaffold_23	alt_donor	7998211	7998212	+	asmbl_31750	none	STRG.26113.1	1	STRG.26113.2	1
scaffold_5	starts_in_intron	5627734	5627734	-	asmbl_44053	none	STRG.5989.2	1	STRG.5989.1	1
scaffold_22	ends_in_intron	6125963	6125963	+	asmbl_30105,asmbl_30108,asmbl_30110	none	STRG.24968.2,STRG.24968.3,STRG.24968.5	3	STRG.24968.1,STRG.24968.4,Trinity_GG_31147_c1_g1_i1,Trinity_GG_31147_c1_g1_i7,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2125,blat.proc3825176.chain_2128,blat.proc3825176.chain_2130,blat.proc3825176.chain_2132	9
scaffold_14	alt_acceptor	8093795	8093796	-	asmbl_13243	none	STRG.17229.2,Trinity_GG_9662_c0_g1_i4,blat.proc3825156.chain_2042	3	STRG.17229.3,STRG.17229.4,Trinity_GG_9662_c0_g1_i1,Trinity_GG_9662_c0_g1_i5,blat.proc3825156.chain_2043,blat.proc3825156.chain_2044	6
scaffold_26	alt_donor	3428029	3428030	-	asmbl_35492	none	STRG.28021.1,blat.proc3825162.chain_1259	2	STRG.28021.2,blat.proc3825162.chain_1260	2
scaffold_11	alt_acceptor	10981902	10981903	-	asmbl_7010	none	STRG.14062.3	1	STRG.14062.2	1
scaffold_16	alternate_exon	11432524	11432568	-	asmbl_17350	none	STRG.19672.2	1	STRG.19672.1,blat.proc3825158.chain_749	2
scaffold_21	alt_donor	6614543	6614544	-	asmbl_27736	none	STRG.24186.2,blat.proc3825160.chain_1337	2	STRG.24186.3	1
scaffold_17	ends_in_intron	9031306	9031306	-	asmbl_18137	none	Trinity_GG_11556_c2_g1_i1,blat.proc3825158.chain_1579	2	STRG.20532.1,STRG.20532.3,STRG.20532.4,STRG.20532.5,STRG.20532.6	5
scaffold_5	alt_donor	6289654	6289655	+	asmbl_45419	none	STRG.6040.1	1	Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	2
scaffold_25	alternate_exon	9447700	9448171	+	asmbl_33821	none	blat.proc3825178.chain_802	1	STRG.27758.1,blat.proc3825178.chain_801,blat.proc3825178.chain_804	3
scaffold_11	spliced_intron	7924464	7925337	+	asmbl_5698	none	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3	STRG.13804.2,Trinity_GG_24903_c0_g1_i4,blat.proc3825170.chain_2322	3
scaffold_9	alternate_exon	13606668	13607747	+	asmbl_54506,asmbl_54508	none	STRG.11647.3,STRG.11647.4,blat.proc3825170.chain_454	3	STRG.11647.2,blat.proc3825170.chain_455	2
scaffold_10	spliced_intron	4058608	4058757	-	asmbl_4254,asmbl_4255	none	STRG.12246.1,STRG.12246.4,blat.proc3825154.chain_820,blat.proc3825154.chain_822	4	STRG.12246.6,STRG.12246.7,blat.proc3825154.chain_823	3
scaffold_10	spliced_intron	715906	716550	-	asmbl_3988,asmbl_3989,asmbl_3991	none	STRG.11957.1,STRG.11957.4,blat.proc3825154.chain_545	3	STRG.11957.2,STRG.11957.3,STRG.11957.5,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541	5
scaffold_10	retained_intron	8952261	8952966	+	asmbl_3348	none	blat.proc3825170.chain_1160	1	STRG.12645.1,Trinity_GG_24232_c0_g1_i1,blat.proc3825170.chain_1159	3
scaffold_8	spliced_intron	6028190	6028278	+	asmbl_52924,asmbl_52926,asmbl_52927,asmbl_52929	none	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2613	4	blat.proc3825168.chain_2614	1
scaffold_27	alt_donor	2554034	2554035	-	asmbl_36829	none	STRG.28734.2,blat.proc3825162.chain_1984	2	STRG.28734.1,blat.proc3825162.chain_1985	2
scaffold_23	ends_in_intron	4684266	4684266	+	asmbl_31523	none	Trinity_GG_31576_c0_g1_i1,blat.proc3825176.chain_2794	2	STRG.25873.1	1
scaffold_4	retained_intron	17805603	17805997	+	asmbl_42074	none	blat.proc3825166.chain_1695	1	blat.proc3825166.chain_1697	1
scaffold_26	ends_in_intron	968911	968911	-	asmbl_35396	none	Trinity_GG_15646_c0_g1_i2,blat.proc3825162.chain_1219	2	STRG.27894.1,STRG.27894.2,blat.proc3825162.chain_1220	3
scaffold_5	alt_acceptor	18369198	18369199	+	asmbl_46255	none	STRG.6969.1,blat.proc3825166.chain_3174	2	STRG.6969.2	1
scaffold_5	spliced_intron	10315083	10315200	+	asmbl_45675	none	STRG.6331.1,blat.proc3825166.chain_2553	2	Trinity_GG_20769_c0_g1_i1,Trinity_GG_20769_c0_g1_i2,blat.proc3825166.chain_2551,blat.proc3825166.chain_2552	4
scaffold_1	alternate_exon	12488033	12488074	+	asmbl_2228	none	STRG.862.1	1	STRG.862.2,STRG.862.3,Trinity_GG_17849_c0_g1_i2,blat.proc3825164.chain_1053	4
scaffold_3	retained_intron	1767415	1767435	+	asmbl_39882	none	Trinity_GG_19006_c0_g1_i3,blat.proc3825164.chain_3228	2	STRG.2994.1	1
scaffold_17	starts_in_intron	3141594	3141594	-	asmbl_17800	none	blat.proc3825158.chain_1117	1	STRG.20097.1,STRG.20097.2,blat.proc3825158.chain_1116	3
scaffold_13	starts_in_intron	663857	663857	-	asmbl_9368	none	Trinity_GG_8668_c0_g1_i2,blat.proc3825156.chain_316	2	STRG.15453.1,STRG.15453.2,Trinity_GG_8668_c0_g1_i3,Trinity_GG_8668_c0_g1_i4,Trinity_GG_8668_c0_g1_i5,Trinity_GG_8668_c0_g1_i6,blat.proc3825156.chain_312,blat.proc3825156.chain_313,blat.proc3825156.chain_314,blat.proc3825156.chain_315	10
scaffold_25	spliced_intron	4810572	4810690	+	asmbl_33530	none	STRG.27415.2,Trinity_GG_32429_c0_g1_i2,blat.proc3825178.chain_523	3	blat.proc3825178.chain_526	1
scaffold_12	alt_acceptor	15677549	15677550	-	asmbl_9092,asmbl_9093,asmbl_9094	none	STRG.15358.1,STRG.15358.3,STRG.15358.4,blat.proc3825156.chain_212,blat.proc3825156.chain_213	5	STRG.15358.2	1
scaffold_19	retained_intron	8872484	8872914	-	asmbl_22317	none	blat.proc3825158.chain_3146	1	STRG.22342.1,blat.proc3825158.chain_3145	2
scaffold_15	skipped_exon	5355541	5357686	-	asmbl_14202	none	STRG.18230.2	1	STRG.18230.1	1
scaffold_23	starts_in_intron	5579108	5579108	+	asmbl_31581	none	Trinity_GG_31602_c1_g1_i1,blat.proc3825176.chain_2842	2	STRG.25933.4	1
scaffold_7	alternate_exon	5232936	5234495	+	asmbl_49801	none	blat.proc3825168.chain_1364	1	blat.proc3825168.chain_1365	1
scaffold_9	alt_acceptor	75742	75743	-	asmbl_54798	none	STRG.10766.1,blat.proc3825152.chain_3065	2	STRG.10766.2	1
scaffold_20	retained_intron	240026	240046	-	asmbl_25472	none	STRG.22712.4	1	STRG.22712.3	1
scaffold_28	alt_acceptor	5239250	5239251	-	asmbl_38267,asmbl_38268	none	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2785	3	blat.proc3825162.chain_2782	1
scaffold_2	alt_donor	6761641	6761642	-	asmbl_23232	none	STRG.2029.2,blat.proc3825148.chain_2012	2	STRG.2029.1,STRG.2029.4,blat.proc3825148.chain_2011	3
scaffold_14	ends_in_intron	6371186	6371186	+	asmbl_12074,asmbl_12075	none	STRG.17085.1,blat.proc3825172.chain_1856	2	STRG.17085.2,STRG.17085.3,blat.proc3825172.chain_1854,blat.proc3825172.chain_1855	4
scaffold_1	spliced_intron	6496620	6496782	-	asmbl_365	none	blat.proc3825148.chain_353	1	STRG.449.1,blat.proc3825148.chain_351	2
scaffold_4	skipped_exon	9728853	9730590	+	asmbl_41621	none	blat.proc3825166.chain_1202	1	STRG.4741.1,blat.proc3825166.chain_1201	2
scaffold_27	alt_acceptor	951093	951094	-	asmbl_36731	none	STRG.28590.1,blat.proc3825162.chain_1838	2	STRG.28590.2	1
scaffold_15	retained_intron	2797848	2798115	+	asmbl_15079	none	STRG.18067.1,blat.proc3825172.chain_2743	2	blat.proc3825172.chain_2741	1
scaffold_12	skipped_exon	1339354	1341285	+	asmbl_7468	none	STRG.14467.2,blat.proc3825170.chain_2961	2	blat.proc3825170.chain_2962,blat.proc3825170.chain_2963	2
scaffold_4	alt_donor	16481262	16481263	-	asmbl_43177,asmbl_43180	none	STRG.5225.1,blat.proc3825150.chain_1404,blat.proc3825150.chain_1405	3	STRG.5225.3,blat.proc3825150.chain_1403	2
scaffold_7	starts_in_intron	15291793	15291793	+	asmbl_50441	none	Trinity_GG_22623_c0_g1_i6,blat.proc3825168.chain_2086	2	STRG.9544.1,STRG.9544.2	2
scaffold_24	starts_in_intron	71600	71600	-	asmbl_32693	none	blat.proc3825160.chain_3441	1	STRG.26319.1,blat.proc3825160.chain_3439	2
scaffold_18	alt_acceptor	13656393	13656394	-	asmbl_20186	none	STRG.21804.2	1	STRG.21804.1,STRG.21804.3	2
scaffold_10	spliced_intron	11486695	11488591	+	asmbl_3462	none	STRG.12802.1	1	STRG.12802.2,Trinity_GG_24377_c0_g1_i3,blat.proc3825170.chain_1413	3
scaffold_21	alternate_exon	6488029	6488118	+	asmbl_28653	none	STRG.24171.3	1	STRG.24171.1,STRG.24171.2,blat.proc3825176.chain_1384,blat.proc3825176.chain_1385	4
scaffold_19	alt_acceptor	11902327	11902328	-	asmbl_22437	none	STRG.22513.2,blat.proc3825158.chain_3270	2	STRG.22513.1	1
scaffold_28	retained_intron	9225871	9225909	-	asmbl_38497,asmbl_38499,asmbl_38500	none	STRG.29966.1,STRG.29966.2,STRG.29966.3,Trinity_GG_16810_c0_g1_i1,blat.proc3825162.chain_3141	5	Trinity_GG_16810_c0_g1_i2,blat.proc3825162.chain_3142	2
scaffold_17	spliced_intron	3795219	3795317	+	asmbl_18737	none	STRG.20139.1,blat.proc3825174.chain_943	2	STRG.20139.2	1
scaffold_28	skipped_exon	5361539	5362274	-	asmbl_38289	none	STRG.29685.2	1	STRG.29685.1,Trinity_GG_16653_c0_g1_i1,blat.proc3825162.chain_2880	3
scaffold_10	alt_acceptor	762522	762523	-	asmbl_4007	none	STRG.11960.2	1	STRG.11960.1,Trinity_GG_6663_c0_g1_i1,Trinity_GG_6663_c0_g1_i2,blat.proc3825154.chain_530,blat.proc3825154.chain_531	5
scaffold_2	alternate_exon	926763	933263	+	asmbl_24155,asmbl_24156	none	STRG.1570.1,blat.proc3825164.chain_1625,blat.proc3825164.chain_1632	3	STRG.1570.4,blat.proc3825164.chain_1629	2
scaffold_6	retained_intron	18269773	18269974	+	asmbl_47826,asmbl_47828	none	STRG.8501.1,STRG.8501.3,Trinity_GG_21995_c0_g1_i1	3	STRG.8501.2,blat.proc3825168.chain_978	2
scaffold_12	starts_in_intron	1337907	1337907	+	asmbl_7468,asmbl_7470	none	STRG.14467.2,blat.proc3825170.chain_2961,blat.proc3825170.chain_2962	3	blat.proc3825170.chain_2963	1
scaffold_28	alt_acceptor	1576302	1576303	+	asmbl_37310	none	STRG.29344.1,blat.proc3825178.chain_2559	2	STRG.29344.2	1
scaffold_6	alt_donor	8011092	8011093	-	asmbl_48525	none	blat.proc3825152.chain_20	1	STRG.7680.1,STRG.7680.2,blat.proc3825152.chain_21	3
scaffold_10	alternate_exon	13472425	13472470	-	asmbl_4888	none	blat.proc3825154.chain_1533	1	STRG.12943.3	1
scaffold_4	alternate_exon	8091015	8091070	-	asmbl_42743	none	STRG.4625.2,Trinity_GG_2590_c0_g1_i1,blat.proc3825150.chain_855	3	STRG.4625.1	1
scaffold_23	alt_donor	9464604	9464605	+	asmbl_31796	none	STRG.26168.2	1	blat.proc3825160.chain_3319	1
scaffold_1	alternate_exon	14076352	14080891	+	asmbl_2333	none	blat.proc3825164.chain_1136	1	STRG.1003.1,Trinity_GG_17903_c0_g1_i3,Trinity_GG_17903_c0_g1_i4,blat.proc3825164.chain_1138,blat.proc3825164.chain_1139	5
scaffold_14	ends_in_intron	3162462	3162462	+	asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11922,asmbl_11923,asmbl_11924	none	STRG.16908.2,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	9	STRG.16908.1,STRG.16908.3	2
scaffold_1	spliced_intron	3270497	3270864	-	asmbl_144,asmbl_145	none	STRG.204.2,STRG.204.3	2	STRG.204.4,blat.proc3825148.chain_202	2
scaffold_2	alternate_exon	4131883	4131909	+	asmbl_24338	none	Trinity_GG_18314_c0_g1_i2,blat.proc3825164.chain_1928	2	STRG.1855.1,blat.proc3825164.chain_1927	2
scaffold_26	alternate_exon	1325456	1325563	-	asmbl_35403	none	STRG.27913.4	1	STRG.27913.1,STRG.27913.2,STRG.27913.3	3
scaffold_13	starts_in_intron	7371934	7371934	+	asmbl_11045	none	Trinity_GG_26104_c0_g1_i4,blat.proc3825172.chain_757	2	STRG.16037.1,Trinity_GG_26104_c0_g1_i3,Trinity_GG_26104_c0_g1_i6,blat.proc3825172.chain_758,blat.proc3825172.chain_759	5
scaffold_1	ends_in_intron	12975074	12975074	+	asmbl_2288	none	blat.proc3825164.chain_1046	1	STRG.935.1,blat.proc3825164.chain_1044,blat.proc3825164.chain_1045,blat.proc3825164.chain_1047	4
scaffold_10	retained_intron	6467752	6468715	-	asmbl_4466,asmbl_4468	none	blat.proc3825154.chain_1051,blat.proc3825154.chain_1053	2	blat.proc3825154.chain_1049,blat.proc3825154.chain_1050,blat.proc3825154.chain_1052,blat.proc3825154.chain_1054	4
scaffold_6	retained_intron	14252463	14253506	-	asmbl_48996	none	STRG.8189.3,Trinity_GG_4646_c0_g1_i2,blat.proc3825152.chain_593	3	blat.proc3825152.chain_592	1
scaffold_4	retained_exon	4551832	4551855	+	asmbl_41288	none	STRG.4367.1,blat.proc3825166.chain_779	2	STRG.4367.3,blat.proc3825166.chain_778	2
scaffold_4	ends_in_intron	2780783	2780783	-	asmbl_42407	none	Trinity_GG_2352_c0_g1_i2,blat.proc3825150.chain_447	2	STRG.4233.1,blat.proc3825150.chain_446	2
scaffold_11	alt_acceptor	8102952	8102953	+	asmbl_5728	none	STRG.13823.2,blat.proc3825170.chain_2351	2	STRG.13823.1,STRG.13823.3,blat.proc3825170.chain_2349,blat.proc3825170.chain_2352	4
scaffold_21	starts_in_intron	1059054	1059054	+	asmbl_28324	none	STRG.23785.3,blat.proc3825176.chain_921	2	STRG.23785.1,STRG.23785.2,Trinity_GG_30443_c0_g1_i1,blat.proc3825176.chain_920	4
scaffold_6	retained_intron	11668222	11668463	+	asmbl_47356	none	Trinity_GG_21670_c0_g1_i1,blat.proc3825168.chain_406	2	STRG.7960.2	1
scaffold_13	starts_in_intron	6289750	6289750	+	asmbl_10918,asmbl_10922	none	blat.proc3825172.chain_658,blat.proc3825172.chain_661	2	STRG.15925.1,blat.proc3825172.chain_659,blat.proc3825172.chain_660	3
scaffold_19	alt_donor	11560079	11560080	-	asmbl_22423	none	STRG.22492.1,Trinity_GG_12521_c0_g1_i2,blat.proc3825158.chain_3269	3	STRG.22492.2,Trinity_GG_12521_c0_g1_i4,blat.proc3825158.chain_3266	3
scaffold_9	alt_donor	8028443	8028444	-	asmbl_55114,asmbl_55115	none	STRG.11231.1,STRG.11231.2,blat.proc3825152.chain_3476,blat.proc3825152.chain_3477	4	STRG.11231.3	1
scaffold_17	spliced_intron	7850236	7850403	+	asmbl_18923,asmbl_18924,asmbl_18925	none	STRG.20411.1,STRG.20411.2,STRG.20411.3	3	Trinity_GG_28451_c1_g1_i3,blat.proc3825174.chain_1176	2
scaffold_2	retained_intron	9791919	9792309	+	asmbl_24688,asmbl_24689	none	Trinity_GG_18541_c0_g1_i4,blat.proc3825164.chain_2362,blat.proc3825164.chain_2365	3	STRG.2185.1,Trinity_GG_18541_c0_g1_i1,Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2361,blat.proc3825164.chain_2363,blat.proc3825164.chain_2364,blat.proc3825164.chain_2366	7
scaffold_24	retained_exon	6784292	6784330	-	asmbl_32973,asmbl_32974	none	STRG.26733.1,STRG.26733.4	2	STRG.26733.2	1
scaffold_2	alt_acceptor	928206	928207	+	asmbl_24154,asmbl_24156,asmbl_24160	none	STRG.1570.6,STRG.1570.9,blat.proc3825164.chain_1625,blat.proc3825164.chain_1631	4	STRG.1570.1,STRG.1570.3,blat.proc3825164.chain_1630,blat.proc3825164.chain_1632	4
scaffold_9	ends_in_intron	10918281	10918281	+	asmbl_54313	none	blat.proc3825170.chain_172	1	STRG.11408.1,STRG.11408.2,blat.proc3825170.chain_168,blat.proc3825170.chain_169,blat.proc3825170.chain_170,blat.proc3825170.chain_171	6
scaffold_4	alternate_exon	16804606	16804704	-	asmbl_43215	none	STRG.5268.2	1	STRG.5268.1,Trinity_GG_2936_c0_g1_i1,blat.proc3825150.chain_1428,blat.proc3825150.chain_1429	4
scaffold_6	retained_intron	13229094	13229383	+	asmbl_47495,asmbl_47496,asmbl_47497,asmbl_47498	none	STRG.8084.2,STRG.8084.3,STRG.8084.5,STRG.8084.8,Trinity_GG_21752_c0_g1_i9,blat.proc3825168.chain_570,blat.proc3825168.chain_578	7	STRG.8084.4,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_575	4
scaffold_24	alt_acceptor	7589801	7589802	-	asmbl_33034	none	STRG.26799.1	1	STRG.26799.2	1
scaffold_27	alt_acceptor	941554	941555	-	asmbl_36727	none	STRG.28593.1,Trinity_GG_16005_c0_g1_i2,blat.proc3825162.chain_1848	3	STRG.28593.2,Trinity_GG_16005_c0_g1_i1,blat.proc3825162.chain_1849	3
scaffold_10	alt_acceptor	12143114	12143115	-	asmbl_4810	none	STRG.12846.1	1	STRG.12846.2	1
scaffold_6	retained_intron	3052979	3053100	+	asmbl_46799	none	Trinity_GG_21338_c0_g2_i1,blat.proc3825166.chain_3528	2	blat.proc3825166.chain_3527	1
scaffold_2	alt_acceptor	16285378	16285379	+	asmbl_25108,asmbl_25110	none	STRG.2562.1,blat.proc3825164.chain_2842,blat.proc3825164.chain_2843	3	STRG.2562.2,blat.proc3825164.chain_2841	2
scaffold_18	alt_acceptor	7520527	7520528	-	asmbl_19953	none	STRG.21448.2	1	STRG.21448.1	1
scaffold_7	starts_in_intron	12371823	12371823	+	asmbl_50249	none	Trinity_GG_22503_c1_g1_i1,blat.proc3825168.chain_1881	2	STRG.9336.1,blat.proc3825168.chain_1874,blat.proc3825168.chain_1875,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878,blat.proc3825168.chain_1879	6
scaffold_20	retained_exon	10132650	10132661	+	asmbl_26936	none	blat.proc3825176.chain_727	1	STRG.23557.2	1
scaffold_5	ends_in_intron	4689474	4689474	-	asmbl_43990	none	blat.proc3825150.chain_2079	1	Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2075,blat.proc3825150.chain_2077,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084	5
scaffold_3	retained_intron	7708984	7709096	-	asmbl_38980	none	blat.proc3825148.chain_3200	1	blat.proc3825148.chain_3197,blat.proc3825148.chain_3202,blat.proc3825148.chain_3204	3
scaffold_3	alt_acceptor	16072624	16072625	+	asmbl_40607	none	STRG.3889.3	1	STRG.3889.1,STRG.3889.2,blat.proc3825166.chain_374,blat.proc3825166.chain_376	4
scaffold_11	skipped_exon	3497053	3497672	+	asmbl_5440	none	STRG.13484.1	1	STRG.13484.2,blat.proc3825170.chain_2033	2
scaffold_28	starts_in_intron	7767672	7767672	-	asmbl_38416	none	blat.proc3825162.chain_3005	1	STRG.29851.1,STRG.29851.2,blat.proc3825162.chain_3004,blat.proc3825162.chain_3006	4
scaffold_1	alt_acceptor	3177902	3177903	+	asmbl_1579	none	STRG.202.2,Trinity_GG_17450_c0_g1_i1,blat.proc3825164.chain_304	3	STRG.202.1,Trinity_GG_17450_c0_g1_i2,blat.proc3825164.chain_305	3
scaffold_16	retained_intron	8549399	8549668	+	asmbl_16401	none	Trinity_GG_27978_c0_g1_i2,blat.proc3825174.chain_398	2	STRG.19480.1,blat.proc3825174.chain_397	2
scaffold_4	alt_acceptor	17805996	17805997	+	asmbl_42076	none	blat.proc3825166.chain_1697	1	blat.proc3825166.chain_1696	1
scaffold_23	spliced_intron	6632390	6632499	+	asmbl_31634,asmbl_31636,asmbl_31638,asmbl_31639,asmbl_31640	none	STRG.26012.1,STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2895,blat.proc3825176.chain_2897,blat.proc3825176.chain_2898	6	blat.proc3825176.chain_2896	1
scaffold_8	ends_in_intron	12810665	12810665	-	asmbl_52235	none	blat.proc3825152.chain_2686	1	STRG.10466.1,STRG.10466.2,blat.proc3825152.chain_2685,blat.proc3825152.chain_2687	4
scaffold_7	alt_acceptor	8288299	8288300	-	asmbl_50991	none	STRG.9063.2	1	STRG.9063.1,Trinity_GG_5113_c0_g1_i2,blat.proc3825152.chain_1448,blat.proc3825152.chain_1449	4
scaffold_21	alternate_exon	694235	694384	+	asmbl_28284	none	STRG.23756.2	1	STRG.23756.3,Trinity_GG_30469_c0_g1_i1	2
scaffold_26	retained_intron	2809035	2809204	-	asmbl_35447	none	STRG.27975.1	1	STRG.27975.2	1
scaffold_11	retained_intron	11641796	11641901	+	asmbl_5984	none	blat.proc3825170.chain_2636	1	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2633,blat.proc3825170.chain_2634,blat.proc3825170.chain_2635,blat.proc3825170.chain_2637,blat.proc3825170.chain_2639,blat.proc3825170.chain_2640	8
scaffold_8	starts_in_intron	3344538	3344538	+	asmbl_52759	none	Trinity_GG_22794_c0_g1_i4	1	STRG.9842.2,blat.proc3825168.chain_2388	2
scaffold_20	ends_in_intron	862341	862341	+	asmbl_26390	none	STRG.22798.1	1	STRG.22798.3	1
scaffold_9	alternate_exon	6988388	6991312	+	asmbl_54117	none	STRG.11214.1,blat.proc3825168.chain_3695,blat.proc3825168.chain_3696	3	STRG.11214.2,blat.proc3825168.chain_3697	2
scaffold_20	starts_in_intron	3070271	3070271	+	asmbl_26520	none	blat.proc3825176.chain_203	1	STRG.23042.1	1
scaffold_17	starts_in_intron	11611010	11611010	-	asmbl_18297	none	blat.proc3825158.chain_1744	1	STRG.20715.1,STRG.20715.2,blat.proc3825158.chain_1742,blat.proc3825158.chain_1743	4
scaffold_4	starts_in_intron	17803283	17803283	+	asmbl_42071	none	Trinity_GG_20260_c0_g1_i2,blat.proc3825166.chain_1678	2	blat.proc3825166.chain_1679	1
scaffold_3	alt_acceptor	7958112	7958113	-	asmbl_39005,asmbl_39008	none	STRG.3392.1,blat.proc3825148.chain_3240,blat.proc3825148.chain_3241	3	STRG.3392.2,blat.proc3825148.chain_3237,blat.proc3825148.chain_3238	3
scaffold_1	spliced_intron	5962385	5962489	-	asmbl_305	none	STRG.399.1,blat.proc3825148.chain_363	2	Trinity_GG_210_c0_g1_i1,blat.proc3825148.chain_362	2
scaffold_321	spliced_intron	806	1026	+	asmbl_40960	none	blat.proc3825178.chain_3373	1	STRG.30275.1	1
scaffold_13	ends_in_intron	4472386	4472386	-	asmbl_9634	none	STRG.15773.3	1	STRG.15773.1	1
scaffold_21	alt_acceptor	1802885	1802886	+	asmbl_28367	none	blat.proc3825176.chain_1000	1	STRG.23826.1,STRG.23826.2,blat.proc3825176.chain_998,blat.proc3825176.chain_999	4
scaffold_12	starts_in_intron	15672722	15672722	+	asmbl_8132	none	Trinity_GG_25752_c0_g1_i2,blat.proc3825172.chain_80	2	STRG.15357.1,Trinity_GG_25752_c0_g1_i1,blat.proc3825172.chain_81	3
scaffold_8	alt_acceptor	15163954	15163955	-	asmbl_52327	none	blat.proc3825152.chain_2787	1	STRG.10547.1,blat.proc3825152.chain_2788	2
scaffold_4	alternate_exon	4413983	4414070	+	asmbl_41250	none	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_853	2	STRG.4349.3,Trinity_GG_19749_c0_g1_i21,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_843,blat.proc3825166.chain_845,blat.proc3825166.chain_850,blat.proc3825166.chain_852	7
scaffold_2	alt_donor	7470999	7471000	-	asmbl_23260,asmbl_23261,asmbl_23263,asmbl_23265,asmbl_23266	none	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i24,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2052,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063,blat.proc3825148.chain_2064	8	blat.proc3825148.chain_2062	1
scaffold_7	ends_in_intron	12369183	12369183	+	asmbl_50253	none	blat.proc3825168.chain_1880	1	STRG.9336.1,blat.proc3825168.chain_1875,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878	4
scaffold_10	alt_donor	1621042	1621043	+	asmbl_2954	none	STRG.12026.4	1	STRG.12026.1,STRG.12026.2,STRG.12026.3,STRG.12026.5,STRG.12026.6,Trinity_GG_23966_c0_g1_i3,Trinity_GG_23966_c0_g1_i4,Trinity_GG_23966_c0_g1_i7,Trinity_GG_23966_c0_g1_i8,Trinity_GG_23966_c0_g1_i9,blat.proc3825170.chain_713,blat.proc3825170.chain_714,blat.proc3825170.chain_715,blat.proc3825170.chain_716,blat.proc3825170.chain_717	15
scaffold_25	spliced_intron	5625977	5626514	-	asmbl_34270	none	STRG.27464.1,blat.proc3825162.chain_828	2	STRG.27464.2,Trinity_GG_15402_c0_g1_i1,blat.proc3825162.chain_830,blat.proc3825162.chain_831	4
scaffold_20	ends_in_intron	11144975	11144975	+	asmbl_27019,asmbl_27021	none	Trinity_GG_30351_c0_g1_i2,Trinity_GG_30351_c0_g1_i4,blat.proc3825176.chain_750,blat.proc3825176.chain_751	4	STRG.23640.1,STRG.23640.2,STRG.23640.3,Trinity_GG_30351_c0_g1_i3,Trinity_GG_30351_c0_g1_i5,blat.proc3825176.chain_748,blat.proc3825176.chain_752	7
scaffold_17	alternate_exon	12383155	12383575	-	asmbl_18323	none	STRG.20776.5,Trinity_GG_11637_c4_g1_i1,blat.proc3825158.chain_1715	3	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4	4
scaffold_18	starts_in_intron	4561121	4561121	-	asmbl_19807	none	blat.proc3825158.chain_2133	1	STRG.21245.1,STRG.21245.2	2
scaffold_11	alt_acceptor	3498110	3498111	+	asmbl_5440,asmbl_5441	none	STRG.13484.1,blat.proc3825170.chain_2033	2	blat.proc3825170.chain_2034	1
scaffold_17	alt_acceptor	3844340	3844341	+	asmbl_18741,asmbl_18743	none	STRG.20149.1,blat.proc3825174.chain_971,blat.proc3825174.chain_972	3	blat.proc3825174.chain_973	1
scaffold_2	starts_in_intron	892229	892229	+	asmbl_24143	none	blat.proc3825164.chain_1727	1	STRG.1566.2,STRG.1566.4,STRG.1566.5,blat.proc3825164.chain_1726,blat.proc3825164.chain_1731	5
scaffold_17	retained_exon	14349636	14350040	-	asmbl_18427	none	blat.proc3825158.chain_1892	1	STRG.20914.1,blat.proc3825158.chain_1891	2
scaffold_1	alternate_exon	18280166	18282998	-	asmbl_1097	none	blat.proc3825148.chain_1284	1	STRG.1279.3,blat.proc3825148.chain_1283	2
scaffold_22	retained_intron	10320358	10320529	+	asmbl_30354	none	STRG.25386.1	1	blat.proc3825176.chain_2362	1
scaffold_127	alt_acceptor	5981	5982	+	asmbl_9281	none	blat.proc3825162.chain_3324	1	STRG.30165.1	1
scaffold_10	spliced_intron	5536926	5537113	+	asmbl_3183	none	STRG.12371.2,blat.proc3825170.chain_1054	2	STRG.12371.1,blat.proc3825170.chain_1053	2
scaffold_20	alternate_exon	11479733	11480460	+	asmbl_27054	none	Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_847	2	Trinity_GG_30405_c0_g2_i1,blat.proc3825176.chain_848	2
scaffold_7	alt_acceptor	18351029	18351030	-	asmbl_51460	none	STRG.9663.3	1	STRG.9663.1,STRG.9663.2	2
scaffold_16	ends_in_intron	8646819	8646819	+	asmbl_16439	none	blat.proc3825174.chain_413	1	STRG.19493.1,STRG.19493.2,STRG.19493.3,blat.proc3825174.chain_411,blat.proc3825174.chain_414,blat.proc3825174.chain_415,blat.proc3825174.chain_416	7
scaffold_6	alt_donor	878149	878150	+	asmbl_46684	none	STRG.7158.2	1	STRG.7158.3	1
scaffold_19	retained_intron	7586777	7586903	-	asmbl_22245	none	STRG.22238.3	1	STRG.22238.2	1
scaffold_8	alt_acceptor	4897731	4897732	+	asmbl_52874	none	STRG.9956.2	1	STRG.9956.1,STRG.9956.3,blat.proc3825168.chain_2415,blat.proc3825168.chain_2416,blat.proc3825168.chain_2417,blat.proc3825168.chain_2418	6
scaffold_6	spliced_intron	13573595	13573738	-	asmbl_48914,asmbl_48915,asmbl_48916,asmbl_48918	none	STRG.8098.2,STRG.8098.3,STRG.8098.4,Trinity_GG_4614_c2_g1_i1,Trinity_GG_4614_c2_g1_i3,blat.proc3825152.chain_537,blat.proc3825152.chain_538	7	STRG.8098.1,Trinity_GG_4614_c2_g1_i2,blat.proc3825152.chain_536	3
scaffold_23	spliced_intron	10897406	10897583	+	asmbl_31890	none	STRG.26291.2,blat.proc3825176.chain_3256	2	blat.proc3825176.chain_3257	1
scaffold_27	alt_acceptor	6241722	6241723	+	asmbl_36389	none	Trinity_GG_33367_c0_g1_i1,blat.proc3825178.chain_2215	2	STRG.29012.1,Trinity_GG_33367_c0_g1_i2,blat.proc3825178.chain_2214	3
scaffold_1	alt_donor	974909	974910	-	asmbl_40	none	blat.proc3825148.chain_81	1	STRG.58.2	1
scaffold_8	alt_donor	5554106	5554107	-	asmbl_51838	none	blat.proc3825152.chain_2236	1	blat.proc3825152.chain_2233	1
scaffold_8	alt_acceptor	18152313	18152314	+	asmbl_53535	none	STRG.10719.1,Trinity_GG_23248_c0_g1_i1,blat.proc3825168.chain_3235	3	STRG.10719.2	1
scaffold_1	starts_in_intron	12057773	12057773	-	asmbl_683	none	STRG.825.2,blat.proc3825148.chain_810	2	STRG.825.1,STRG.825.3,blat.proc3825148.chain_809	3
scaffold_8	spliced_intron	9937116	9937196	-	asmbl_52076,asmbl_52079	none	STRG.10247.1,STRG.10247.2,blat.proc3825152.chain_2520	3	blat.proc3825152.chain_2521	1
scaffold_14	spliced_intron	13897375	13897829	+	asmbl_12510,asmbl_12513	none	STRG.17673.1,blat.proc3825172.chain_2392	2	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2
scaffold_21	retained_intron	8529725	8529850	+	asmbl_28817	none	blat.proc3825176.chain_1459,blat.proc3825176.chain_1460	2	STRG.24391.1,blat.proc3825176.chain_1461,blat.proc3825176.chain_1462,blat.proc3825176.chain_1464,blat.proc3825176.chain_1465	5
scaffold_7	spliced_intron	13554150	13554287	-	asmbl_51311	none	STRG.9465.1,blat.proc3825152.chain_1802	2	blat.proc3825152.chain_1803,blat.proc3825152.chain_1804	2
scaffold_21	starts_in_intron	8528130	8528130	+	asmbl_28820	none	blat.proc3825176.chain_1466	1	STRG.24391.1,blat.proc3825176.chain_1459,blat.proc3825176.chain_1461,blat.proc3825176.chain_1465	4
scaffold_14	alternate_exon	7259041	7259071	-	asmbl_13182	none	STRG.17163.1	1	STRG.17163.2	1
scaffold_14	alt_donor	11639387	11639388	+	asmbl_12397	none	STRG.17500.1	1	STRG.17500.2	1
scaffold_25	spliced_intron	4539033	4539139	+	asmbl_33513	none	blat.proc3825178.chain_493	1	Trinity_GG_32413_c0_g1_i4,blat.proc3825178.chain_491	2
scaffold_13	alt_acceptor	3526670	3526671	+	asmbl_10701,asmbl_10702,asmbl_10704	none	STRG.15676.1,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_364	4	blat.proc3825172.chain_363	1
scaffold_24	ends_in_intron	3747109	3747109	-	asmbl_32844,asmbl_32845	none	blat.proc3825160.chain_3699	1	STRG.26576.1,blat.proc3825160.chain_3697,blat.proc3825160.chain_3698	3
scaffold_1	starts_in_intron	1450299	1450299	-	asmbl_74	none	Trinity_GG_4_c2_g1_i1,blat.proc3825148.chain_8	2	STRG.89.1,STRG.89.2,blat.proc3825148.chain_6	3
scaffold_3	spliced_intron	7708984	7709096	-	asmbl_38977,asmbl_38982,asmbl_38984	none	blat.proc3825148.chain_3197,blat.proc3825148.chain_3202,blat.proc3825148.chain_3204	3	blat.proc3825148.chain_3200	1
scaffold_11	spliced_intron	11941632	11941758	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.3	1
scaffold_2	spliced_intron	7469822	7470021	-	asmbl_23261,asmbl_23266	none	STRG.2074.3,blat.proc3825148.chain_2064	2	blat.proc3825148.chain_2058,blat.proc3825148.chain_2063	2
scaffold_10	alternate_exon	12697331	12697437	-	asmbl_4816	none	STRG.12858.2,blat.proc3825154.chain_1453	2	STRG.12858.1,blat.proc3825154.chain_1452	2
scaffold_27	alt_acceptor	1551417	1551418	+	asmbl_36020,asmbl_36021	none	STRG.28642.1,Trinity_GG_33147_c0_g1_i4,Trinity_GG_33147_c0_g1_i5,blat.proc3825178.chain_1740,blat.proc3825178.chain_1741	5	STRG.28642.2	1
scaffold_6	skipped_exon	2843454	2844211	-	asmbl_48168,asmbl_48169	none	STRG.7282.1,STRG.7282.2,blat.proc3825150.chain_3368,blat.proc3825150.chain_3369	4	STRG.7282.3,blat.proc3825150.chain_3370	2
scaffold_9	alt_acceptor	17833586	17833587	+	asmbl_54649	none	STRG.11868.1	1	STRG.11868.2	1
scaffold_13	alt_acceptor	3266818	3266819	-	asmbl_9525	none	STRG.15637.2	1	STRG.15637.1,blat.proc3825156.chain_512	2
scaffold_1	alt_acceptor	10414454	10414455	-	asmbl_585	none	STRG.678.2,blat.proc3825148.chain_718	2	STRG.678.3,blat.proc3825148.chain_717	2
scaffold_13	alt_donor	11580783	11580784	+	asmbl_11282	none	blat.proc3825172.chain_1012	1	STRG.16314.1,blat.proc3825172.chain_1011,blat.proc3825172.chain_1013	3
scaffold_12	ends_in_intron	12449143	12449143	+	asmbl_8005	none	blat.proc3825170.chain_3675	1	STRG.15151.1,STRG.15151.2,STRG.15151.3,blat.proc3825170.chain_3676,blat.proc3825170.chain_3677	5
scaffold_11	alternate_exon	7048375	7048791	+	asmbl_5648,asmbl_5649	none	STRG.13733.5,Trinity_GG_24878_c0_g1_i3,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2274	5	STRG.13733.1,STRG.13733.4,Trinity_GG_24878_c0_g1_i2,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i6,blat.proc3825170.chain_2271,blat.proc3825170.chain_2272,blat.proc3825170.chain_2273	8
scaffold_10	starts_in_intron	5094641	5094641	-	asmbl_4337	none	blat.proc3825154.chain_902	1	STRG.12332.1,blat.proc3825154.chain_901	2
scaffold_9	alt_acceptor	5528971	5528972	+	asmbl_54050,asmbl_54051	none	STRG.11135.2,Trinity_GG_23507_c1_g1_i1,blat.proc3825168.chain_3646	3	STRG.11135.1,Trinity_GG_23507_c1_g1_i2,blat.proc3825168.chain_3645	3
scaffold_5	alt_acceptor	10983815	10983816	+	asmbl_45720	none	STRG.6378.2	1	STRG.6378.1	1
scaffold_5	alt_donor	18561081	18561082	+	asmbl_46266	none	STRG.6987.2,Trinity_GG_21132_c0_g1_i3,blat.proc3825166.chain_3149	3	STRG.6987.1,STRG.6987.3,STRG.6987.4,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i4,Trinity_GG_21132_c0_g1_i7,Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3153,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	13
scaffold_22	alternate_exon	4279982	4286223	-	asmbl_29241	none	STRG.24854.3	1	STRG.24854.6,Trinity_GG_13910_c2_g1_i1,blat.proc3825160.chain_2089	3
scaffold_5	alt_acceptor	11602160	11602161	-	asmbl_44414	none	STRG.6423.2	1	STRG.6423.1	1
scaffold_2	alt_acceptor	6349310	6349311	-	asmbl_23193,asmbl_23194	none	STRG.2001.1,Trinity_GG_1061_c0_g1_i1,Trinity_GG_1061_c0_g1_i2,blat.proc3825148.chain_1893,blat.proc3825148.chain_1894	5	STRG.2001.2	1
scaffold_3	alt_acceptor	14764626	14764627	-	asmbl_39418,asmbl_39419	none	STRG.3820.3,Trinity_GG_2082_c0_g1_i2,blat.proc3825148.chain_3684	3	STRG.3820.2,STRG.3820.4,Trinity_GG_2082_c0_g1_i3,blat.proc3825148.chain_3685	4
scaffold_19	spliced_intron	7586777	7586903	-	asmbl_22247	none	STRG.22238.2	1	STRG.22238.3	1
scaffold_14	retained_exon	9296011	9296022	-	asmbl_13371,asmbl_13372,asmbl_13373,asmbl_13378,asmbl_13379	none	blat.proc3825156.chain_2166,blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	8	STRG.17341.1,STRG.17341.2,STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2172	5
scaffold_15	alternate_exon	6884075	6884395	-	asmbl_14259	none	STRG.18301.6,Trinity_GG_10293_c1_g1_i1,blat.proc3825156.chain_3160	3	STRG.18301.4,Trinity_GG_10293_c0_g1_i10,blat.proc3825156.chain_3154	3
scaffold_16	alternate_exon	13213506	13216830	+	asmbl_16656	none	STRG.19781.3	1	blat.proc3825174.chain_692	1
scaffold_7	retained_exon	12269185	12269733	+	asmbl_50230,asmbl_50231,asmbl_50232	none	STRG.9326.1,STRG.9326.3,STRG.9326.4,Trinity_GG_22467_c0_g1_i1,Trinity_GG_22467_c0_g1_i3,Trinity_GG_22467_c0_g1_i4,Trinity_GG_22467_c0_g1_i5,blat.proc3825168.chain_1798,blat.proc3825168.chain_1801,blat.proc3825168.chain_1802,blat.proc3825168.chain_1803,blat.proc3825168.chain_1804	12	STRG.9326.2,blat.proc3825168.chain_1806	2
scaffold_12	spliced_intron	6526646	6526749	-	asmbl_8540,asmbl_8541	none	STRG.14748.1,STRG.14748.2,blat.proc3825154.chain_3260	3	blat.proc3825154.chain_3259	1
scaffold_22	spliced_intron	214606	214723	+	asmbl_29818,asmbl_29819,asmbl_29821,asmbl_29823	none	STRG.24676.1,STRG.24676.2,STRG.24676.3,STRG.24676.5,blat.proc3825176.chain_1807	5	Trinity_GG_30960_c0_g1_i4,blat.proc3825176.chain_1806,blat.proc3825176.chain_1808	3
scaffold_6	alt_donor	13167976	13167977	-	asmbl_48884,asmbl_48890	none	STRG.8074.1,blat.proc3825152.chain_472,blat.proc3825152.chain_478	3	blat.proc3825152.chain_470,blat.proc3825152.chain_471	2
scaffold_4	starts_in_intron	1612355	1612355	+	asmbl_41115	none	Trinity_GG_19638_c0_g1_i2,blat.proc3825166.chain_638	2	STRG.4191.1,blat.proc3825166.chain_639	2
scaffold_14	ends_in_intron	6671760	6671760	-	asmbl_13148	none	Trinity_GG_9571_c0_g1_i4,blat.proc3825156.chain_1875	2	STRG.17126.1,STRG.17126.2,blat.proc3825156.chain_1874,blat.proc3825156.chain_1876	4
scaffold_20	starts_in_intron	1108496	1108496	-	asmbl_25534	none	blat.proc3825158.chain_3676	1	blat.proc3825158.chain_3675,blat.proc3825158.chain_3677	2
scaffold_7	alternate_exon	5235112	5235518	+	asmbl_49803	none	blat.proc3825168.chain_1365	1	blat.proc3825168.chain_1364	1
scaffold_7	alt_acceptor	12542744	12542745	-	asmbl_51243	none	STRG.9363.4	1	STRG.9363.1,STRG.9363.5,blat.proc3825152.chain_1713,blat.proc3825152.chain_1717	4
scaffold_11	retained_intron	1304892	1305131	-	asmbl_6428	none	Trinity_GG_7464_c1_g1_i1,blat.proc3825154.chain_1905	2	STRG.13321.1,blat.proc3825154.chain_1906	2
scaffold_3	alt_acceptor	13703525	13703526	+	asmbl_40452,asmbl_40454	none	STRG.3717.2,blat.proc3825166.chain_218	2	STRG.3717.1,STRG.3717.4,Trinity_GG_19399_c0_g1_i2,blat.proc3825166.chain_217,blat.proc3825166.chain_222	5
scaffold_16	alternate_exon	15232919	15233141	+	asmbl_16724	none	STRG.19889.2,Trinity_GG_28164_c1_g1_i1	2	STRG.19889.1	1
scaffold_11	alt_donor	3552599	3552600	+	asmbl_5451	none	STRG.13482.1,blat.proc3825170.chain_2029	2	blat.proc3825170.chain_2027	1
scaffold_2	starts_in_intron	19318912	19318912	+	asmbl_25272	none	blat.proc3825164.chain_3028	1	STRG.2797.1,blat.proc3825164.chain_3027	2
scaffold_12	spliced_intron	14256759	14257074	+	asmbl_8077	none	STRG.15262.3	1	STRG.15262.2,blat.proc3825170.chain_3697	2
scaffold_17	spliced_intron	651449	651532	+	asmbl_18553	none	STRG.19914.1,Trinity_GG_28211_c0_g1_i1,blat.proc3825174.chain_792	3	STRG.19914.2,Trinity_GG_28211_c0_g1_i2,blat.proc3825174.chain_793	3
scaffold_12	alt_donor	11222507	11222508	-	asmbl_8793	none	STRG.15066.2,blat.proc3825154.chain_3580	2	STRG.15066.1,blat.proc3825154.chain_3581	2
scaffold_1	alt_acceptor	10950349	10950350	+	asmbl_2041	none	blat.proc3825164.chain_863	1	STRG.715.1,STRG.715.3,blat.proc3825164.chain_858,blat.proc3825164.chain_864	4
scaffold_9	starts_in_intron	5532503	5532503	+	asmbl_54052	none	Trinity_GG_23507_c0_g2_i1,blat.proc3825168.chain_3644	2	STRG.11135.1,Trinity_GG_23507_c0_g2_i2,blat.proc3825168.chain_3643	3
scaffold_17	alt_acceptor	11035527	11035528	-	asmbl_18267	none	STRG.20664.3	1	STRG.20664.4,blat.proc3825158.chain_1638,blat.proc3825158.chain_1639	3
scaffold_7	alt_acceptor	1461351	1461352	-	asmbl_50738	none	STRG.8644.1,blat.proc3825152.chain_1144	2	STRG.8644.2	1
scaffold_5	starts_in_intron	2670540	2670540	-	asmbl_43891	none	Trinity_GG_3227_c0_g1_i5	1	STRG.5796.2,STRG.5796.3,STRG.5796.5,blat.proc3825150.chain_1947,blat.proc3825150.chain_1949	5
scaffold_1	retained_intron	6215109	6215240	-	asmbl_322	none	STRG.414.2,Trinity_GG_223_c1_g1_i1,blat.proc3825148.chain_388	3	STRG.414.1,Trinity_GG_223_c1_g1_i2,blat.proc3825148.chain_389	3
scaffold_27	retained_exon	973582	973720	+	asmbl_35968,asmbl_35974,asmbl_35975	none	STRG.28595.1,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i3,blat.proc3825178.chain_1718,blat.proc3825178.chain_1720	5	STRG.28595.4	1
scaffold_2	spliced_intron	7466796	7467432	-	asmbl_23261	none	STRG.2074.3	1	STRG.2074.2,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2058	4
scaffold_28	retained_intron	2622616	2622713	+	asmbl_37388	none	blat.proc3825178.chain_2542	1	STRG.29442.1,blat.proc3825178.chain_2541	2
scaffold_27	alt_acceptor	4939041	4939042	+	asmbl_36328	none	STRG.28932.4	1	STRG.28932.1,STRG.28932.2,STRG.28932.3,blat.proc3825178.chain_2145,blat.proc3825178.chain_2146,blat.proc3825178.chain_2147	6
scaffold_21	starts_in_intron	2398896	2398896	+	asmbl_28379	none	Trinity_GG_30499_c0_g1_i3,Trinity_GG_30499_c0_g1_i4,blat.proc3825176.chain_1014	3	STRG.23860.1,blat.proc3825176.chain_1018	2
scaffold_5	ends_in_intron	12529783	12529783	-	asmbl_44466	none	blat.proc3825150.chain_2699	1	STRG.6499.1,STRG.6499.2,STRG.6499.3	3
scaffold_19	spliced_intron	1504585	1504605	+	asmbl_21246	none	STRG.21912.4	1	STRG.21912.1,STRG.21912.2,STRG.21912.3,STRG.21912.5,blat.proc3825174.chain_2941	5
scaffold_27	alt_donor	975977	975978	+	asmbl_35968	none	STRG.28595.1	1	STRG.28595.4,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i12,Trinity_GG_33133_c0_g1_i4,Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1712,blat.proc3825178.chain_1717,blat.proc3825178.chain_1719,blat.proc3825178.chain_1720	9
scaffold_9	starts_in_intron	5288093	5288093	+	asmbl_54030	none	blat.proc3825168.chain_3571	1	STRG.11112.1,STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6
scaffold_5	alternate_exon	17224664	17224835	+	asmbl_46151	none	blat.proc3825166.chain_3077	1	blat.proc3825166.chain_3073	1
scaffold_340	retained_intron	809	1024	+	asmbl_41013,asmbl_41015	none	STRG.30295.2,Trinity_GG_34083_c0_g1_i3,blat.proc3825178.chain_3392	3	STRG.30295.1	1
scaffold_7	starts_in_intron	8709402	8709402	+	asmbl_50042	none	STRG.9106.2,blat.proc3825168.chain_1630	2	STRG.9106.1,Trinity_GG_22368_c0_g1_i1,blat.proc3825168.chain_1631	3
scaffold_5	ends_in_intron	15797222	15797222	-	asmbl_44727	none	Trinity_GG_3802_c0_g1_i2,blat.proc3825150.chain_2964	2	STRG.6770.1	1
scaffold_24	spliced_intron	3655845	3656072	+	asmbl_32148,asmbl_32153	none	STRG.26550.1,blat.proc3825176.chain_3465,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469	4	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3
scaffold_25	retained_exon	4576040	4576177	+	asmbl_33517,asmbl_33518,asmbl_33521,asmbl_33522	none	STRG.27395.1,STRG.27395.2,Trinity_GG_32430_c0_g1_i1,Trinity_GG_32430_c0_g1_i9,blat.proc3825178.chain_528,blat.proc3825178.chain_532	6	STRG.27395.3,Trinity_GG_32430_c0_g1_i4,Trinity_GG_32430_c0_g1_i6,blat.proc3825178.chain_529,blat.proc3825178.chain_531	5
scaffold_11	alternate_exon	4673294	4675175	-	asmbl_6612	none	STRG.13564.3,blat.proc3825154.chain_2159	2	Trinity_GG_7606_c0_g2_i2,blat.proc3825154.chain_2156	2
scaffold_22	retained_intron	4241052	4241193	-	asmbl_29219	none	blat.proc3825160.chain_2067	1	STRG.24845.1,STRG.24845.2,STRG.24845.3,Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065,blat.proc3825160.chain_2066,blat.proc3825160.chain_2068	7
scaffold_3	starts_in_intron	13986762	13986762	-	asmbl_39319	none	blat.proc3825148.chain_3651	1	STRG.3742.1,blat.proc3825148.chain_3649	2
scaffold_21	alt_acceptor	6507807	6507808	+	asmbl_28657	none	STRG.24172.3	1	STRG.24172.1,STRG.24172.2,blat.proc3825176.chain_1377,blat.proc3825176.chain_1378	4
scaffold_10	retained_exon	4131738	4131755	-	asmbl_4261	none	STRG.12250.2,blat.proc3825154.chain_829	2	STRG.12250.1,STRG.12250.3,blat.proc3825154.chain_830	3
scaffold_8	skipped_exon	10585517	10587677	-	asmbl_52111	none	STRG.10293.1,blat.proc3825152.chain_2488	2	STRG.10293.2	1
scaffold_9	alt_acceptor	2487146	2487147	+	asmbl_53838	none	STRG.10891.2	1	STRG.10891.1,blat.proc3825168.chain_3392	2
scaffold_4	starts_in_intron	7392047	7392047	+	asmbl_41498	none	Trinity_GG_19867_c0_g1_i1,blat.proc3825166.chain_1061	2	STRG.4591.1,STRG.4591.2,blat.proc3825166.chain_1062	3
scaffold_8	retained_intron	9811870	9812023	+	asmbl_53107	none	STRG.10225.1,Trinity_GG_23000_c1_g1_i2	2	STRG.10225.2,blat.proc3825168.chain_2789	2
scaffold_1	retained_intron	14426870	14427019	-	asmbl_925	none	Trinity_GG_551_c0_g1_i7,blat.proc3825148.chain_1048	2	STRG.1045.1,STRG.1045.2,STRG.1045.3,STRG.1045.4,blat.proc3825148.chain_1046,blat.proc3825148.chain_1047,blat.proc3825148.chain_1049,blat.proc3825148.chain_1050	8
scaffold_26	spliced_intron	5486047	5486534	+	asmbl_35000	none	STRG.28257.4,Trinity_GG_32935_c1_g2_i3,blat.proc3825178.chain_1366	3	Trinity_GG_32935_c1_g2_i4,blat.proc3825178.chain_1367	2
scaffold_4	skipped_exon	8771059	8771702	+	asmbl_41578,asmbl_41579,asmbl_41580,asmbl_41581	none	STRG.4691.1,STRG.4691.2,STRG.4691.3,STRG.4691.4,Trinity_GG_19922_c0_g1_i2,blat.proc3825166.chain_1141,blat.proc3825166.chain_1142	7	STRG.4691.5	1
scaffold_13	ends_in_intron	6608143	6608143	+	asmbl_10946,asmbl_10947	none	STRG.15951.1,blat.proc3825172.chain_675,blat.proc3825172.chain_677	3	STRG.15951.2,STRG.15951.4,blat.proc3825172.chain_676	3
scaffold_2	alt_donor	17923168	17923169	+	asmbl_25203	none	STRG.2680.2	1	STRG.2680.1,blat.proc3825164.chain_2954,blat.proc3825164.chain_2955	3
scaffold_9	retained_intron	119321	119545	+	asmbl_53752	none	STRG.10771.2,Trinity_GG_23289_c0_g1_i1,blat.proc3825168.chain_3302	3	STRG.10771.3,blat.proc3825168.chain_3303	2
scaffold_25	alt_acceptor	3086686	3086687	-	asmbl_34088,asmbl_34089,asmbl_34090,asmbl_34094	none	blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555,blat.proc3825162.chain_559	4	STRG.27251.2,STRG.27251.3,STRG.27251.5	3
scaffold_6	ends_in_intron	13192075	13192075	+	asmbl_47483	none	blat.proc3825168.chain_558	1	STRG.8078.1,blat.proc3825168.chain_559,blat.proc3825168.chain_560	3
scaffold_1	alternate_exon	22371837	22371914	+	asmbl_2692	none	STRG.1491.6	1	STRG.1491.3,STRG.1491.4	2
scaffold_12	retained_intron	7836793	7836902	-	asmbl_8617	none	blat.proc3825154.chain_3378	1	STRG.14858.1,blat.proc3825154.chain_3377	2
scaffold_4	ends_in_intron	4067318	4067318	+	asmbl_41215	none	blat.proc3825166.chain_760	1	STRG.4309.1,blat.proc3825166.chain_761	2
scaffold_11	retained_intron	13462843	13463131	-	asmbl_7130,asmbl_7131	none	STRG.14207.1,STRG.14207.2,Trinity_GG_7945_c0_g1_i4,Trinity_GG_7945_c0_g1_i5,blat.proc3825154.chain_2748,blat.proc3825154.chain_2749	6	STRG.14207.3,Trinity_GG_7945_c0_g1_i1,blat.proc3825154.chain_2747	3
scaffold_16	alt_donor	3978216	3978217	-	asmbl_17023,asmbl_17025	none	STRG.19215.1,STRG.19215.3,blat.proc3825158.chain_345	3	STRG.19215.2	1
scaffold_5	retained_intron	14125735	14126570	+	asmbl_45901	none	Trinity_GG_20902_c3_g1_i1,blat.proc3825166.chain_2777	2	blat.proc3825166.chain_2776	1
scaffold_19	starts_in_intron	3670196	3670196	-	asmbl_22119	none	Trinity_GG_12309_c0_g1_i5	1	STRG.22046.1,Trinity_GG_12309_c0_g1_i1,Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2893,blat.proc3825158.chain_2894,blat.proc3825158.chain_2898	6
scaffold_19	ends_in_intron	12818668	12818668	-	asmbl_22545,asmbl_22546,asmbl_22547,asmbl_22549,asmbl_22553,asmbl_22554	none	STRG.22609.1,STRG.22609.2,Trinity_GG_12585_c0_g1_i15,blat.proc3825158.chain_3408,blat.proc3825158.chain_3409,blat.proc3825158.chain_3410	6	Trinity_GG_12585_c0_g1_i7,blat.proc3825158.chain_3414	2
scaffold_21	spliced_intron	405731	406300	-	asmbl_27311,asmbl_27312	none	Trinity_GG_13230_c0_g1_i7,Trinity_GG_13230_c0_g1_i8,blat.proc3825160.chain_862,blat.proc3825160.chain_863	4	STRG.23739.1,Trinity_GG_13230_c0_g1_i1,Trinity_GG_13230_c0_g1_i3,Trinity_GG_13230_c0_g1_i5,Trinity_GG_13230_c0_g1_i6,blat.proc3825160.chain_864,blat.proc3825160.chain_866,blat.proc3825160.chain_867,blat.proc3825160.chain_868	9
scaffold_11	starts_in_intron	3357943	3357943	+	asmbl_5423,asmbl_5424	none	blat.proc3825170.chain_2003,blat.proc3825170.chain_2004	2	STRG.13469.1	1
scaffold_4	retained_intron	12571369	12571452	-	asmbl_42932	none	blat.proc3825150.chain_1085	1	STRG.4898.1,blat.proc3825150.chain_1087	2
scaffold_12	alt_donor	13391506	13391507	-	asmbl_8944	none	STRG.15219.2	1	STRG.15219.1,STRG.15219.3,STRG.15219.4,STRG.15219.5,blat.proc3825156.chain_4,blat.proc3825156.chain_5,blat.proc3825156.chain_6,blat.proc3825156.chain_7,blat.proc3825156.chain_8	9
scaffold_25	starts_in_intron	6001333	6001333	-	asmbl_34300	none	STRG.27504.2,blat.proc3825162.chain_782	2	STRG.27504.1,blat.proc3825162.chain_783	2
scaffold_1	retained_exon	19042734	19043376	+	asmbl_2581	none	STRG.1335.5	1	STRG.1335.1,Trinity_GG_18101_c0_g1_i2	2
scaffold_11	spliced_intron	171562	171671	+	asmbl_5260	none	STRG.13244.2,blat.proc3825170.chain_1820	2	blat.proc3825170.chain_1818	1
scaffold_1	spliced_intron	12338031	12338333	-	asmbl_702,asmbl_703,asmbl_704,asmbl_706,asmbl_707,asmbl_708,asmbl_712,asmbl_713,asmbl_714,asmbl_716	none	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_831,blat.proc3825148.chain_834,blat.proc3825148.chain_835,blat.proc3825148.chain_839,blat.proc3825148.chain_841,blat.proc3825148.chain_842	12	blat.proc3825148.chain_826,blat.proc3825148.chain_833,blat.proc3825148.chain_838,blat.proc3825148.chain_840	4
scaffold_6	retained_exon	2926280	2926388	-	asmbl_48194,asmbl_48195	none	STRG.7297.1,STRG.7297.2,blat.proc3825150.chain_3331,blat.proc3825150.chain_3332	4	STRG.7297.4	1
scaffold_6	alternate_exon	2901924	2902039	+	asmbl_46783	none	STRG.7291.4	1	STRG.7291.1,STRG.7291.2,STRG.7291.3,blat.proc3825166.chain_3491,blat.proc3825166.chain_3492	5
scaffold_12	ends_in_intron	7591248	7591248	-	asmbl_8601	none	Trinity_GG_8279_c0_g1_i1,blat.proc3825154.chain_3350	2	STRG.14839.2,blat.proc3825154.chain_3349	2
scaffold_20	alt_donor	2402102	2402103	+	asmbl_26490	none	STRG.22972.1	1	STRG.22972.2,blat.proc3825176.chain_155,blat.proc3825176.chain_156,blat.proc3825176.chain_157	4
scaffold_8	starts_in_intron	9816590	9816590	+	asmbl_53113	none	blat.proc3825168.chain_2786	1	STRG.10229.1,STRG.10229.2,blat.proc3825168.chain_2784,blat.proc3825168.chain_2785	4
scaffold_11	alternate_exon	3091689	3091770	+	asmbl_5400	none	STRG.13431.1	1	STRG.13431.3	1
scaffold_14	alt_acceptor	11665977	11665978	-	asmbl_13511,asmbl_13513	none	STRG.17511.2,blat.proc3825156.chain_2307,blat.proc3825156.chain_2308	3	STRG.17511.1,blat.proc3825156.chain_2309	2
scaffold_3	retained_exon	14513521	14513808	-	asmbl_39386	none	STRG.3791.2	1	STRG.3791.3,Trinity_GG_2101_c0_g1_i1,blat.proc3825148.chain_3738	3
scaffold_5	retained_intron	939477	939513	-	asmbl_43792	none	STRG.5640.1,Trinity_GG_3129_c0_g1_i1	2	STRG.5640.3	1
scaffold_25	starts_in_intron	9431572	9431572	+	asmbl_33814	none	Trinity_GG_32597_c1_g1_i2,blat.proc3825178.chain_799	2	STRG.27757.1,STRG.27757.2,Trinity_GG_32597_c0_g1_i2,blat.proc3825178.chain_798	4
scaffold_11	spliced_intron	12377973	12378067	-	asmbl_7083	none	STRG.14152.1,blat.proc3825154.chain_2688	2	blat.proc3825154.chain_2687	1
scaffold_28	ends_in_intron	8684467	8684467	-	asmbl_38479	none	Trinity_GG_16734_c0_g1_i1,blat.proc3825162.chain_3023	2	STRG.29941.1,Trinity_GG_16734_c0_g1_i2,blat.proc3825162.chain_3022	3
scaffold_21	alt_acceptor	7503983	7503984	-	asmbl_27829,asmbl_27833	none	STRG.24282.1,blat.proc3825160.chain_1439,blat.proc3825160.chain_1440	3	STRG.24282.2,STRG.24282.3,STRG.24282.4	3
scaffold_21	spliced_intron	7421674	7421760	-	asmbl_27807,asmbl_27808,asmbl_27810,asmbl_27811	none	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	5	blat.proc3825160.chain_1445	1
scaffold_6	alt_acceptor	13277283	13277284	+	asmbl_47514,asmbl_47516,asmbl_47517,asmbl_47518	none	STRG.8090.2,STRG.8090.3,STRG.8090.4,blat.proc3825168.chain_518,blat.proc3825168.chain_519	5	blat.proc3825168.chain_520	1
scaffold_1	ends_in_intron	7532224	7532224	+	asmbl_1903	none	blat.proc3825164.chain_620	1	STRG.529.1,blat.proc3825164.chain_619	2
scaffold_5	alt_acceptor	988895	988896	-	asmbl_43806,asmbl_43807,asmbl_43808	none	STRG.5650.2,STRG.5650.3,STRG.5650.4	3	STRG.5650.1,blat.proc3825150.chain_1880,blat.proc3825150.chain_1881	3
scaffold_22	retained_exon	9720834	9720993	+	asmbl_30313	none	STRG.25308.1,blat.proc3825176.chain_2309	2	STRG.25308.3	1
scaffold_6	skipped_exon	10894193	10895417	+	asmbl_47305	none	STRG.7907.1,blat.proc3825168.chain_382	2	STRG.7907.2,STRG.7907.3,blat.proc3825168.chain_379	3
scaffold_6	alternate_exon	3052622	3052978	+	asmbl_46804	none	blat.proc3825166.chain_3527	1	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4
scaffold_18	alt_donor	7521959	7521960	+	asmbl_20744	none	STRG.21453.2,Trinity_GG_29154_c0_g1_i2,blat.proc3825174.chain_2476	3	STRG.21453.1,Trinity_GG_29154_c0_g1_i1,blat.proc3825174.chain_2475	3
scaffold_1	alternate_exon	7283824	7284224	-	asmbl_425	none	STRG.519.3,blat.proc3825148.chain_448	2	STRG.519.1,blat.proc3825148.chain_447	2
scaffold_10	alt_acceptor	6000756	6000757	+	asmbl_3213	none	STRG.12423.2,blat.proc3825170.chain_1099	2	STRG.12423.1,blat.proc3825170.chain_1098	2
scaffold_5	alt_donor	5046593	5046594	+	asmbl_45326,asmbl_45327,asmbl_45331	none	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126,blat.proc3825166.chain_2129	5	STRG.5958.3,blat.proc3825166.chain_2123	2
scaffold_14	starts_in_intron	8528741	8528741	+	asmbl_12250	none	blat.proc3825172.chain_1986	1	STRG.17289.1,blat.proc3825172.chain_1987	2
scaffold_10	spliced_intron	5849287	5849521	-	asmbl_4389	none	STRG.12404.3,blat.proc3825154.chain_886	2	STRG.12404.1,STRG.12404.2,blat.proc3825154.chain_885	3
scaffold_7	retained_intron	12082951	12083025	+	asmbl_50217,asmbl_50218	none	STRG.9316.1,STRG.9316.2,blat.proc3825168.chain_1845	3	STRG.9316.4	1
scaffold_20	spliced_intron	11078627	11078744	-	asmbl_26131	none	STRG.23624.2,blat.proc3825160.chain_595	2	blat.proc3825160.chain_591,blat.proc3825160.chain_593	2
scaffold_5	alt_donor	9704701	9704702	-	asmbl_44293,asmbl_44295	none	STRG.6293.2,blat.proc3825150.chain_2499,blat.proc3825150.chain_2502,blat.proc3825150.chain_2503	4	STRG.6293.4,blat.proc3825150.chain_2497,blat.proc3825150.chain_2505	3
scaffold_3	retained_intron	18947965	18948081	+	asmbl_40755	none	blat.proc3825166.chain_535	1	STRG.4065.1,blat.proc3825166.chain_536	2
scaffold_16	skipped_exon	13948602	13949816	-	asmbl_17419	none	STRG.19792.2	1	STRG.19792.1,blat.proc3825158.chain_831	2
scaffold_13	alternate_exon	16048995	16049039	+	asmbl_11546	none	STRG.16642.2	1	blat.proc3825172.chain_1438	1
scaffold_13	spliced_intron	5506444	5506736	+	asmbl_10855,asmbl_10856,asmbl_10857	none	STRG.15845.2,STRG.15845.3,STRG.15845.4,Trinity_GG_25977_c0_g1_i1,Trinity_GG_25977_c0_g1_i2,Trinity_GG_25977_c0_g1_i3,blat.proc3825172.chain_513,blat.proc3825172.chain_514,blat.proc3825172.chain_516	9	STRG.15845.1,Trinity_GG_25977_c0_g1_i4,blat.proc3825172.chain_515	3
scaffold_14	alternate_exon	9287287	9293843	-	asmbl_13371,asmbl_13372,asmbl_13373,asmbl_13378	none	blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	7	blat.proc3825156.chain_2166	1
scaffold_6	alternate_exon	2923962	2927678	-	asmbl_48194	none	STRG.7297.1,blat.proc3825150.chain_3331	2	blat.proc3825150.chain_3330	1
scaffold_8	retained_intron	1207473	1207512	-	asmbl_51700	none	STRG.9750.2	1	STRG.9750.1	1
scaffold_16	ends_in_intron	4076719	4076719	+	asmbl_16168	none	Trinity_GG_27836_c0_g1_i4,blat.proc3825174.chain_117	2	STRG.19224.1,STRG.19224.2,blat.proc3825174.chain_115,blat.proc3825174.chain_116	4
scaffold_15	retained_intron	4815601	4815751	-	asmbl_14165	none	blat.proc3825156.chain_2947	1	STRG.18206.1,blat.proc3825156.chain_2945,blat.proc3825156.chain_2946,blat.proc3825156.chain_2948	4
scaffold_1	starts_in_intron	12745659	12745659	-	asmbl_750	none	STRG.895.2	1	STRG.895.1,STRG.895.5,blat.proc3825148.chain_850	3
scaffold_3	retained_intron	10756104	10756206	+	asmbl_40296	none	STRG.3509.2,blat.proc3825166.chain_29	2	STRG.3509.1,blat.proc3825166.chain_30	2
scaffold_22	alt_donor	11544027	11544028	+	asmbl_30405	none	STRG.25505.1	1	STRG.25505.3,blat.proc3825176.chain_2435	2
scaffold_9	alt_donor	4901122	4901123	+	asmbl_53971	none	STRG.11065.1,blat.proc3825168.chain_3605	2	STRG.11065.2	1
scaffold_4	starts_in_intron	8081751	8081751	+	asmbl_41538	none	blat.proc3825166.chain_1100	1	STRG.4627.1,STRG.4627.2,blat.proc3825166.chain_1102	3
scaffold_16	alt_acceptor	4077924	4077925	+	asmbl_16165,asmbl_16166	none	STRG.19224.1,blat.proc3825174.chain_115,blat.proc3825174.chain_116	3	STRG.19224.2	1
scaffold_7	alt_acceptor	8173612	8173613	+	asmbl_49960	none	STRG.9049.1,blat.proc3825168.chain_1534	2	STRG.9049.3,Trinity_GG_22317_c0_g2_i2,blat.proc3825168.chain_1533	3
scaffold_14	starts_in_intron	12349132	12349132	+	asmbl_12423,asmbl_12424,asmbl_12426	none	STRG.17576.2,STRG.17576.3,blat.proc3825172.chain_2272,blat.proc3825172.chain_2273,blat.proc3825172.chain_2274	5	STRG.17576.1	1
scaffold_11	spliced_intron	8330044	8330165	-	asmbl_6856	none	STRG.13848.2,Trinity_GG_7746_c0_g1_i1,blat.proc3825154.chain_2402	3	STRG.13848.1,Trinity_GG_7746_c0_g1_i2,blat.proc3825154.chain_2401	3
scaffold_24	spliced_intron	2514768	2515025	+	asmbl_32101	none	STRG.26469.4,blat.proc3825176.chain_3420	2	STRG.26469.3,blat.proc3825176.chain_3421	2
scaffold_20	retained_intron	8936755	8936837	-	asmbl_26013,asmbl_26014	none	STRG.23433.1,STRG.23433.3	2	STRG.23433.2	1
scaffold_2	starts_in_intron	7214039	7214039	+	asmbl_24548	none	Trinity_GG_18495_c0_g1_i5,blat.proc3825164.chain_2272	2	STRG.2054.1	1
scaffold_3	alternate_exon	1447221	1447936	+	asmbl_39847	none	STRG.2964.1,blat.proc3825164.chain_3191	2	blat.proc3825164.chain_3190	1
scaffold_7	retained_intron	124900	125149	-	asmbl_50667	none	STRG.8595.1	1	STRG.8595.2,STRG.8595.5,STRG.8595.7	3
scaffold_2	alt_donor	13079477	13079478	-	asmbl_23489,asmbl_23490,asmbl_23492,asmbl_23494	none	STRG.2337.1,STRG.2337.2,blat.proc3825148.chain_2340,blat.proc3825148.chain_2342,blat.proc3825148.chain_2343	5	STRG.2337.3,STRG.2337.4,STRG.2337.5,blat.proc3825148.chain_2341,blat.proc3825148.chain_2345	5
scaffold_18	alt_acceptor	9787711	9787712	-	asmbl_20087	none	STRG.21584.2	1	STRG.21584.1	1
scaffold_20	ends_in_intron	11078487	11078487	-	asmbl_26135	none	blat.proc3825160.chain_593	1	STRG.23624.1,STRG.23624.2,blat.proc3825160.chain_591,blat.proc3825160.chain_592,blat.proc3825160.chain_594,blat.proc3825160.chain_595	6
scaffold_8	retained_exon	9166680	9166778	-	asmbl_52016,asmbl_52017,asmbl_52019	none	STRG.10185.1,STRG.10185.2,blat.proc3825152.chain_2350	3	STRG.10185.3,STRG.10185.4	2
scaffold_11	alternate_exon	6140423	6141021	-	asmbl_6700,asmbl_6701,asmbl_6702	none	STRG.13679.1,blat.proc3825154.chain_2224,blat.proc3825154.chain_2225,blat.proc3825154.chain_2226	4	STRG.13679.2,blat.proc3825154.chain_2227	2
scaffold_21	alt_acceptor	6558917	6558918	-	asmbl_27730	none	Trinity_GG_13482_c0_g1_i1,blat.proc3825160.chain_1319	2	STRG.24179.1	1
scaffold_17	spliced_intron	9531820	9532877	+	asmbl_19105,asmbl_19106	none	STRG.20578.3,Trinity_GG_28562_c0_g1_i2,blat.proc3825174.chain_1395	3	blat.proc3825174.chain_1398,blat.proc3825174.chain_1401	2
scaffold_7	alt_acceptor	4498642	4498643	-	asmbl_50863,asmbl_50864,asmbl_50865,asmbl_50866	none	STRG.8821.1,STRG.8821.2,Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1301,blat.proc3825152.chain_1303,blat.proc3825152.chain_1304	6	blat.proc3825152.chain_1302	1
scaffold_27	spliced_intron	6069445	6069599	+	asmbl_36368	none	STRG.29007.2,blat.proc3825178.chain_2207	2	STRG.29007.1,Trinity_GG_33364_c0_g1_i6,blat.proc3825178.chain_2208,blat.proc3825178.chain_2209	4
scaffold_11	retained_intron	9083178	9083266	-	asmbl_6910	none	STRG.13943.1,Trinity_GG_7780_c0_g1_i3,blat.proc3825154.chain_2465	3	blat.proc3825154.chain_2463,blat.proc3825154.chain_2464	2
scaffold_3	retained_intron	19821324	19822204	-	asmbl_39659,asmbl_39660	none	STRG.4096.1,STRG.4096.2,Trinity_GG_2255_c0_g1_i1,Trinity_GG_2255_c0_g1_i3,blat.proc3825150.chain_269,blat.proc3825150.chain_270	6	STRG.4096.3,Trinity_GG_2255_c0_g1_i2,blat.proc3825150.chain_268	3
scaffold_19	ends_in_intron	8346372	8346372	+	asmbl_21518	none	blat.proc3825174.chain_3270	1	STRG.22295.1,Trinity_GG_29613_c0_g1_i2,blat.proc3825174.chain_3271	3
scaffold_12	retained_intron	6544970	6545003	+	asmbl_7698,asmbl_7700	none	STRG.14758.1,Trinity_GG_25435_c0_g1_i1,Trinity_GG_25435_c0_g1_i2,blat.proc3825170.chain_3247,blat.proc3825170.chain_3248	5	STRG.14758.3	1
scaffold_26	retained_intron	5874040	5874142	-	asmbl_35633	none	STRG.28291.1	1	STRG.28291.2,Trinity_GG_15831_c0_g1_i1,blat.proc3825162.chain_1536	3
scaffold_4	skipped_exon	12710958	12711630	+	asmbl_41740	none	STRG.4912.1,blat.proc3825166.chain_1322	2	blat.proc3825166.chain_1323	1
scaffold_10	alt_acceptor	1425930	1425931	+	asmbl_2931,asmbl_2935,asmbl_2937	none	STRG.12016.1,STRG.12016.4,STRG.12016.5,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_760,blat.proc3825170.chain_763	6	STRG.12016.3,Trinity_GG_23995_c0_g1_i4,blat.proc3825170.chain_765	3
scaffold_8	ends_in_intron	10060035	10060035	-	asmbl_52099	none	Trinity_GG_5681_c0_g2_i1,blat.proc3825152.chain_2449	2	STRG.10265.1,STRG.10265.2,Trinity_GG_5681_c0_g1_i1,blat.proc3825152.chain_2447,blat.proc3825152.chain_2448	5
scaffold_2	alternate_exon	17605108	17606331	+	asmbl_25184	none	STRG.2647.1,blat.proc3825164.chain_2907	2	Trinity_GG_18796_c0_g1_i2,blat.proc3825164.chain_2906	2
scaffold_21	alt_donor	257072	257073	-	asmbl_27282,asmbl_27286,asmbl_27291	none	STRG.23725.5,blat.proc3825160.chain_807,blat.proc3825160.chain_811,blat.proc3825160.chain_812	4	STRG.23725.3,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_808,blat.proc3825160.chain_810	5
scaffold_9	retained_intron	15495374	15495474	-	asmbl_55533	none	Trinity_GG_6493_c0_g1_i10,blat.proc3825154.chain_217	2	STRG.11747.1,STRG.11747.2,blat.proc3825154.chain_212,blat.proc3825154.chain_215	4
scaffold_18	ends_in_intron	7860665	7860665	+	asmbl_20797	none	blat.proc3825174.chain_2543	1	STRG.21485.1,blat.proc3825174.chain_2541	2
scaffold_25	starts_in_intron	4466265	4466265	-	asmbl_34194	none	Trinity_GG_15362_c0_g1_i1	1	STRG.27380.1,STRG.27380.2	2
scaffold_23	alternate_exon	1571309	1571487	-	asmbl_30661	none	STRG.25638.1,Trinity_GG_14351_c1_g1_i1,blat.proc3825160.chain_2824	3	STRG.25638.2,Trinity_GG_14351_c1_g1_i2,blat.proc3825160.chain_2825	3
scaffold_1	retained_intron	16478811	16478993	-	asmbl_994,asmbl_997	none	blat.proc3825148.chain_1097,blat.proc3825148.chain_1099	2	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1098,blat.proc3825148.chain_1100,blat.proc3825148.chain_1102,blat.proc3825148.chain_1104	7
scaffold_14	skipped_exon	219174	220726	-	asmbl_12806,asmbl_12807,asmbl_12808,asmbl_12809	none	STRG.16718.1,STRG.16718.3,STRG.16718.4,blat.proc3825156.chain_1511,blat.proc3825156.chain_1512,blat.proc3825156.chain_1514	6	STRG.16718.2,blat.proc3825156.chain_1513	2
scaffold_15	retained_intron	4232365	4232536	+	asmbl_15131,asmbl_15133	none	blat.proc3825172.chain_2837,blat.proc3825172.chain_2840	2	STRG.18172.1,STRG.18172.2,blat.proc3825172.chain_2836,blat.proc3825172.chain_2838,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842,blat.proc3825172.chain_2843	7
scaffold_7	starts_in_intron	2857715	2857715	-	asmbl_50772,asmbl_50774	none	STRG.8713.3,STRG.8713.4	2	STRG.8713.2,blat.proc3825152.chain_1111,blat.proc3825152.chain_1112	3
scaffold_2	retained_exon	14228449	14228452	-	asmbl_23586	none	blat.proc3825148.chain_2409	1	STRG.2420.1	1
scaffold_27	alternate_exon	9093722	9093918	-	asmbl_37124	none	STRG.29162.1,Trinity_GG_16303_c0_g1_i3,blat.proc3825162.chain_2295	3	STRG.29162.2,Trinity_GG_16303_c0_g1_i1,blat.proc3825162.chain_2296,blat.proc3825162.chain_2297	4
scaffold_21	starts_in_intron	5183008	5183008	+	asmbl_28558	none	Trinity_GG_30635_c0_g1_i2,blat.proc3825176.chain_1251	2	STRG.24055.1,Trinity_GG_30635_c0_g1_i1,blat.proc3825176.chain_1252	3
scaffold_1	retained_exon	14320864	14320879	+	asmbl_2382	none	blat.proc3825164.chain_1225	1	STRG.1027.1,blat.proc3825164.chain_1222,blat.proc3825164.chain_1223	3
scaffold_1	retained_intron	17724961	17725166	+	asmbl_2530	none	Trinity_GG_18025_c0_g1_i1,blat.proc3825164.chain_1365	2	STRG.1244.1,STRG.1244.2,Trinity_GG_18025_c0_g1_i2,Trinity_GG_18025_c0_g1_i3,blat.proc3825164.chain_1364,blat.proc3825164.chain_1366	6
scaffold_12	ends_in_intron	14187722	14187722	-	asmbl_8996	none	Trinity_GG_8551_c1_g1_i1,blat.proc3825156.chain_63	2	STRG.15259.2,STRG.15259.3	2
scaffold_2	starts_in_intron	7406610	7406610	-	asmbl_23250	none	STRG.2065.2,Trinity_GG_1101_c0_g1_i6,blat.proc3825148.chain_1981	3	STRG.2065.1,STRG.2065.3,STRG.2065.4,STRG.2065.5,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i4,Trinity_GG_1101_c0_g1_i5,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1982,blat.proc3825148.chain_1983,blat.proc3825148.chain_1985,blat.proc3825148.chain_1986	12
scaffold_9	alt_donor	6281816	6281817	+	asmbl_54082	none	STRG.11170.1,Trinity_GG_23509_c0_g1_i2,blat.proc3825168.chain_3663	3	STRG.11170.2,Trinity_GG_23509_c0_g1_i1,blat.proc3825168.chain_3664	3
scaffold_9	starts_in_intron	7607843	7607843	-	asmbl_55105	none	blat.proc3825152.chain_3448	1	STRG.11220.1,blat.proc3825152.chain_3447	2
scaffold_17	ends_in_intron	8397058	8397058	-	asmbl_18093	none	Trinity_GG_11516_c0_g1_i1,blat.proc3825158.chain_1514	2	STRG.20461.1,STRG.20461.2,blat.proc3825158.chain_1515	3
scaffold_7	retained_intron	17685023	17685192	+	asmbl_50491	none	Trinity_GG_22620_c0_g1_i2,blat.proc3825168.chain_2076	2	STRG.9618.1,blat.proc3825168.chain_2077	2
scaffold_8	retained_intron	10059557	10059771	-	asmbl_52098	none	Trinity_GG_5681_c0_g1_i1,blat.proc3825152.chain_2446	2	STRG.10265.1,STRG.10265.2,blat.proc3825152.chain_2447,blat.proc3825152.chain_2448	4
scaffold_5	alt_acceptor	5058001	5058002	+	asmbl_45332,asmbl_45335	none	STRG.5959.2,STRG.5959.4,blat.proc3825166.chain_2197	3	STRG.5959.1,STRG.5959.3,blat.proc3825166.chain_2195	3
scaffold_26	alt_acceptor	1326467	1326468	-	asmbl_35398,asmbl_35401	none	STRG.27913.1,STRG.27913.3	2	STRG.27913.2,STRG.27913.4	2
scaffold_14	alternate_exon	9999242	9999372	-	asmbl_13403	none	STRG.17372.2	1	STRG.17372.1,blat.proc3825156.chain_2186,blat.proc3825156.chain_2187	3
scaffold_15	spliced_intron	181512	182202	+	asmbl_14952	none	STRG.17881.2	1	STRG.17881.1,Trinity_GG_27137_c0_g1_i3,blat.proc3825172.chain_2601	3
scaffold_18	spliced_intron	8726003	8726193	+	asmbl_20859,asmbl_20863	none	STRG.21537.1,blat.proc3825174.chain_2616,blat.proc3825174.chain_2619	3	STRG.21537.2,blat.proc3825174.chain_2615,blat.proc3825174.chain_2617	3
scaffold_26	retained_intron	4690170	4690297	-	asmbl_35589	none	blat.proc3825162.chain_1413	1	STRG.28194.1,STRG.28194.2,STRG.28194.3,blat.proc3825162.chain_1410,blat.proc3825162.chain_1412	5
scaffold_28	starts_in_intron	2198684	2198684	+	asmbl_37345,asmbl_37347	none	STRG.29390.4,Trinity_GG_33584_c1_g1_i2,blat.proc3825178.chain_2546	3	STRG.29390.3,Trinity_GG_33584_c1_g1_i1,blat.proc3825178.chain_2545	3
scaffold_4	alternate_exon	3425371	3425570	-	asmbl_42441	none	STRG.4271.1	1	STRG.4271.2	1
scaffold_8	spliced_intron	17494980	17495324	+	asmbl_53489	none	STRG.10682.4	1	STRG.10682.2,Trinity_GG_23212_c0_g2_i1,Trinity_GG_23212_c2_g1_i1,blat.proc3825168.chain_3156,blat.proc3825168.chain_3158	5
scaffold_5	alt_acceptor	15111371	15111372	-	asmbl_44645	none	STRG.6701.3	1	STRG.6701.1,STRG.6701.2,Trinity_GG_3759_c0_g1_i1,Trinity_GG_3759_c0_g1_i3,blat.proc3825150.chain_2888,blat.proc3825150.chain_2889	6
scaffold_25	starts_in_intron	996285	996285	-	asmbl_34017	none	blat.proc3825162.chain_518	1	STRG.27160.1,blat.proc3825162.chain_519,blat.proc3825162.chain_520,blat.proc3825162.chain_521	4
scaffold_13	starts_in_intron	3691690	3691690	-	asmbl_9561	none	Trinity_GG_8802_c0_g1_i2,blat.proc3825156.chain_555	2	STRG.15684.1,Trinity_GG_8802_c0_g1_i1,blat.proc3825156.chain_554	3
scaffold_28	alternate_exon	2437801	2437886	-	asmbl_38059	none	STRG.29420.1,blat.proc3825162.chain_2566	2	STRG.29420.2,blat.proc3825162.chain_2565	2
scaffold_26	spliced_intron	3790895	3791028	+	asmbl_34835,asmbl_34838	none	STRG.28068.3,blat.proc3825178.chain_1145	2	blat.proc3825178.chain_1150,blat.proc3825178.chain_1153	2
scaffold_3	retained_intron	13899490	13899649	+	asmbl_40469	none	blat.proc3825166.chain_232	1	STRG.3736.1,blat.proc3825166.chain_230,blat.proc3825166.chain_231	3
scaffold_17	alternate_exon	9444317	9452032	+	asmbl_19083,asmbl_19086,asmbl_19087	none	STRG.20569.1,Trinity_GG_28584_c0_g1_i2,Trinity_GG_28584_c0_g1_i3,Trinity_GG_28584_c0_g1_i4,blat.proc3825174.chain_1439,blat.proc3825174.chain_1442,blat.proc3825174.chain_1443	7	STRG.20569.3,STRG.20569.4,Trinity_GG_28584_c0_g1_i1,blat.proc3825174.chain_1441	4
scaffold_2	starts_in_intron	6765802	6765802	+	asmbl_24492	none	Trinity_GG_18452_c0_g1_i6,blat.proc3825164.chain_2153	2	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2147,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	11
scaffold_25	retained_intron	4810874	4810995	+	asmbl_33532,asmbl_33533	none	Trinity_GG_32429_c0_g1_i1,Trinity_GG_32429_c0_g1_i4,blat.proc3825178.chain_524,blat.proc3825178.chain_525	4	STRG.27415.1,STRG.27415.2,Trinity_GG_32429_c0_g1_i2,Trinity_GG_32429_c0_g1_i5,blat.proc3825178.chain_523,blat.proc3825178.chain_526,blat.proc3825178.chain_527	7
scaffold_13	alt_acceptor	3734553	3734554	+	asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737	none	STRG.15695.1,STRG.15695.2,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_448	5	Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,blat.proc3825172.chain_445,blat.proc3825172.chain_446	4
scaffold_25	spliced_intron	4549453	4549681	-	asmbl_34209	none	STRG.27393.1,blat.proc3825162.chain_737	2	STRG.27393.2	1
scaffold_13	ends_in_intron	221732	221732	+	asmbl_10462	none	Trinity_GG_25807_c0_g2_i1,blat.proc3825172.chain_176	2	STRG.15430.1,blat.proc3825172.chain_173,blat.proc3825172.chain_174,blat.proc3825172.chain_175	4
scaffold_4	retained_intron	3237335	3237419	-	asmbl_42422	none	Trinity_GG_2372_c0_g1_i5,Trinity_GG_2372_c0_g1_i7,blat.proc3825150.chain_492,blat.proc3825150.chain_494	4	STRG.4249.1,STRG.4249.2,blat.proc3825150.chain_493	3
scaffold_1555	alternate_exon	996	1456	-	asmbl_15976	none	STRG.30628.4	1	STRG.30628.2	1
scaffold_21	skipped_exon	7116647	7117325	+	asmbl_28713	none	STRG.24236.2	1	STRG.24236.1,Trinity_GG_30742_c0_g1_i1,blat.proc3825176.chain_1450	3
scaffold_18	retained_exon	3917647	3918211	-	asmbl_19782	none	blat.proc3825158.chain_2160	1	STRG.21203.5	1
scaffold_5	starts_in_intron	5622631	5622631	-	asmbl_44048,asmbl_44051	none	blat.proc3825150.chain_2200,blat.proc3825150.chain_2203	2	STRG.5989.1,STRG.5989.2	2
scaffold_5	starts_in_intron	4097009	4097009	-	asmbl_43950	none	blat.proc3825150.chain_2052	1	STRG.5882.1,blat.proc3825150.chain_2053	2
scaffold_18	retained_intron	13805940	13806190	+	asmbl_21040,asmbl_21041	none	blat.proc3825174.chain_2838,blat.proc3825174.chain_2839	2	STRG.21822.1,Trinity_GG_29370_c0_g1_i1,Trinity_GG_29370_c0_g1_i3,blat.proc3825174.chain_2835,blat.proc3825174.chain_2837	5
scaffold_7	spliced_intron	3954085	3954301	-	asmbl_50829,asmbl_50830,asmbl_50834,asmbl_50835,asmbl_50838	none	STRG.8794.1,STRG.8794.2,blat.proc3825152.chain_1228,blat.proc3825152.chain_1229,blat.proc3825152.chain_1230,blat.proc3825152.chain_1232,blat.proc3825152.chain_1235	7	blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1231,blat.proc3825152.chain_1233,blat.proc3825152.chain_1236	5
scaffold_10	retained_intron	17328288	17328429	+	asmbl_3763	none	STRG.13184.1,blat.proc3825170.chain_1714	2	blat.proc3825170.chain_1713	1
scaffold_25	starts_in_intron	5776613	5776613	+	asmbl_33576	none	Trinity_GG_32454_c0_g1_i6,blat.proc3825178.chain_584	2	STRG.27472.2,blat.proc3825178.chain_588	2
scaffold_7	alt_donor	4178777	4178778	+	asmbl_49723,asmbl_49726	none	STRG.8817.1,STRG.8817.3,blat.proc3825168.chain_1255	3	STRG.8817.2,blat.proc3825168.chain_1254	2
scaffold_17	ends_in_intron	8399101	8399101	-	asmbl_18095	none	Trinity_GG_11516_c0_g1_i2,blat.proc3825158.chain_1513	2	STRG.20461.2,Trinity_GG_11516_c0_g1_i1,blat.proc3825158.chain_1514	3
scaffold_9	retained_intron	3414002	3414140	-	asmbl_54900	none	blat.proc3825152.chain_3204,blat.proc3825152.chain_3206	2	STRG.10955.1,blat.proc3825152.chain_3205	2
scaffold_15	alternate_exon	14744794	14744915	-	asmbl_14742	none	STRG.18889.1,blat.proc3825158.chain_15	2	STRG.18889.2,blat.proc3825158.chain_14	2
scaffold_5	spliced_intron	19374068	19374221	-	asmbl_44905,asmbl_44909	none	STRG.7039.1,STRG.7039.4,Trinity_GG_3919_c0_g1_i1,blat.proc3825150.chain_3148	4	STRG.7039.5,blat.proc3825150.chain_3150	2
scaffold_1	retained_intron	3270179	3270373	-	asmbl_141,asmbl_145	none	STRG.204.2,blat.proc3825148.chain_202	2	STRG.204.3	1
scaffold_10	starts_in_intron	1164082	1164082	+	asmbl_2913	none	Trinity_GG_23983_c0_g1_i2,blat.proc3825170.chain_744	2	STRG.12004.2,blat.proc3825170.chain_746	2
scaffold_14	alt_acceptor	8335442	8335443	+	asmbl_12224,asmbl_12226	none	STRG.17258.1,blat.proc3825172.chain_2025,blat.proc3825172.chain_2027	3	STRG.17258.2,blat.proc3825172.chain_2026	2
scaffold_2	skipped_exon	893112	894265	+	asmbl_24142	none	Trinity_GG_18212_c0_g2_i7,blat.proc3825164.chain_1728	2	STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725	3
scaffold_9	retained_intron	8939956	8940066	-	asmbl_55145	none	blat.proc3825152.chain_3430,blat.proc3825152.chain_3431	2	STRG.11280.1,STRG.11280.2,blat.proc3825152.chain_3427,blat.proc3825152.chain_3429	4
scaffold_19	retained_intron	12973202	12973409	-	asmbl_22574	none	STRG.22618.3	1	STRG.22618.1,STRG.22618.2,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3363	6
scaffold_20	retained_intron	1490365	1490400	+	asmbl_26415	none	STRG.22869.4,Trinity_GG_29893_c1_g1_i3,Trinity_GG_29893_c1_g1_i4,blat.proc3825176.chain_24,blat.proc3825176.chain_25,blat.proc3825176.chain_26	6	STRG.22869.1,STRG.22869.6	2
scaffold_13	spliced_intron	2507878	2508092	+	asmbl_10619,asmbl_10620,asmbl_10621	none	STRG.15559.1,STRG.15559.2,STRG.15559.3,Trinity_GG_25851_c0_g1_i2,Trinity_GG_25851_c0_g1_i4,Trinity_GG_25851_c0_g1_i5,blat.proc3825172.chain_284,blat.proc3825172.chain_285,blat.proc3825172.chain_286	9	Trinity_GG_25851_c0_g1_i1,blat.proc3825172.chain_287	2
scaffold_16	retained_exon	5391350	5391376	-	asmbl_17092,asmbl_17095	none	STRG.19287.1,blat.proc3825158.chain_440,blat.proc3825158.chain_441	3	STRG.19287.3,blat.proc3825158.chain_442	2
scaffold_26	alternate_exon	5158155	5158239	+	asmbl_34967	none	STRG.28222.1,Trinity_GG_32897_c0_g1_i1,blat.proc3825178.chain_1292	3	STRG.28222.2,Trinity_GG_32897_c0_g1_i2,blat.proc3825178.chain_1293	3
scaffold_21	starts_in_intron	9926567	9926567	-	asmbl_27988	none	blat.proc3825160.chain_1643	1	STRG.24461.1,STRG.24461.3,STRG.24461.4,blat.proc3825160.chain_1641	4
scaffold_10	starts_in_intron	13544825	13544825	-	asmbl_4905	none	blat.proc3825154.chain_1573	1	STRG.12954.1,blat.proc3825154.chain_1574,blat.proc3825154.chain_1576	3
scaffold_6	alt_donor	12629256	12629257	-	asmbl_48835,asmbl_48838	none	STRG.8021.1,Trinity_GG_4556_c0_g1_i2,blat.proc3825152.chain_411,blat.proc3825152.chain_412	4	STRG.8021.2,blat.proc3825152.chain_413	2
scaffold_5	alt_acceptor	9704092	9704093	-	asmbl_44293	none	STRG.6293.2,blat.proc3825150.chain_2499	2	STRG.6293.4,blat.proc3825150.chain_2497,blat.proc3825150.chain_2502,blat.proc3825150.chain_2503,blat.proc3825150.chain_2505	5
scaffold_3	starts_in_intron	5870617	5870617	+	asmbl_40088	none	Trinity_GG_19140_c0_g1_i2,blat.proc3825164.chain_3505	2	STRG.3249.1,STRG.3249.2,blat.proc3825164.chain_3504	3
scaffold_11	alt_acceptor	8398327	8398328	+	asmbl_5761,asmbl_5767	none	STRG.13857.2,Trinity_GG_24940_c0_g1_i11,blat.proc3825170.chain_2391,blat.proc3825170.chain_2393,blat.proc3825170.chain_2397	5	STRG.13857.1,blat.proc3825170.chain_2390,blat.proc3825170.chain_2392	3
scaffold_5	alt_acceptor	18787659	18787660	+	asmbl_46284	none	STRG.7002.2,Trinity_GG_21158_c0_g1_i2,blat.proc3825166.chain_3210	3	STRG.7002.1,Trinity_GG_21158_c0_g1_i3,blat.proc3825166.chain_3211	3
scaffold_10	alt_donor	7684017	7684018	+	asmbl_3297,asmbl_3298	none	STRG.12557.2,STRG.12557.5,blat.proc3825170.chain_1166,blat.proc3825170.chain_1167,blat.proc3825170.chain_1170	5	blat.proc3825170.chain_1171	1
scaffold_5	starts_in_intron	1082556	1082556	-	asmbl_43817	none	Trinity_GG_3195_c0_g1_i2,blat.proc3825150.chain_1884	2	STRG.5659.1,STRG.5659.2,Trinity_GG_3195_c0_g1_i3,blat.proc3825150.chain_1885	4
scaffold_15	alt_donor	397320	397321	+	asmbl_14974	none	STRG.17897.1,blat.proc3825172.chain_2638	2	STRG.17897.2	1
scaffold_3	starts_in_intron	3752213	3752213	+	asmbl_39973	none	Trinity_GG_19063_c0_g1_i1,blat.proc3825164.chain_3341	2	STRG.3102.1,blat.proc3825164.chain_3338,blat.proc3825164.chain_3340	3
scaffold_14	alt_donor	8414381	8414382	-	asmbl_13313	none	STRG.17280.1,blat.proc3825156.chain_2082	2	STRG.17280.2,blat.proc3825156.chain_2083	2
scaffold_13	ends_in_intron	12459934	12459934	-	asmbl_10137,asmbl_10138	none	STRG.16372.3,blat.proc3825156.chain_1192,blat.proc3825156.chain_1193	3	STRG.16372.2	1
scaffold_10	retained_exon	976258	976416	-	asmbl_4022	none	Trinity_GG_6637_c0_g1_i9	1	Trinity_GG_6637_c0_g1_i6	1
scaffold_6	alt_acceptor	9098573	9098574	+	asmbl_47204,asmbl_47205	none	STRG.7789.2,STRG.7789.3	2	STRG.7789.1,blat.proc3825168.chain_248	2
scaffold_8	starts_in_intron	18435598	18435598	+	asmbl_53553	none	Trinity_GG_23267_c0_g1_i1,blat.proc3825168.chain_3267	2	STRG.10742.1,STRG.10742.2,Trinity_GG_23267_c0_g1_i3,blat.proc3825168.chain_3265,blat.proc3825168.chain_3266	5
scaffold_5	retained_intron	4696342	4696593	+	asmbl_45287	none	STRG.5925.1	1	blat.proc3825166.chain_2149	1
scaffold_18	starts_in_intron	2830658	2830658	+	asmbl_20429	none	blat.proc3825174.chain_2055	1	STRG.21142.1,STRG.21142.2,STRG.21142.3,blat.proc3825174.chain_2047,blat.proc3825174.chain_2050,blat.proc3825174.chain_2052,blat.proc3825174.chain_2056	7
scaffold_6	alternate_exon	1749103	1750139	-	asmbl_48115,asmbl_48117,asmbl_48119	none	STRG.7232.1,STRG.7232.5,blat.proc3825150.chain_3311,blat.proc3825150.chain_3312,blat.proc3825150.chain_3315	5	STRG.7232.7	1
scaffold_22	starts_in_intron	607807	607807	+	asmbl_29872	none	Trinity_GG_30964_c0_g1_i2,blat.proc3825176.chain_1822	2	STRG.24709.1,Trinity_GG_30964_c0_g1_i1,blat.proc3825176.chain_1823	3
scaffold_1	spliced_intron	8759445	8759617	-	asmbl_488	none	blat.proc3825148.chain_601	1	STRG.579.2,STRG.579.4,STRG.579.5,blat.proc3825148.chain_602,blat.proc3825148.chain_604	5
scaffold_18	spliced_intron	8399580	8401325	+	asmbl_20834,asmbl_20836,asmbl_20837,asmbl_20839	none	STRG.21513.2,STRG.21513.3,STRG.21513.5,blat.proc3825174.chain_2581	4	STRG.21513.4,blat.proc3825174.chain_2583	2
scaffold_2	retained_exon	14231966	14231969	-	asmbl_23588	none	blat.proc3825148.chain_2420	1	STRG.2421.1	1
scaffold_1	skipped_exon	4225778	4226335	+	asmbl_1640	none	STRG.254.1,blat.proc3825164.chain_377,blat.proc3825164.chain_379	3	STRG.254.2,blat.proc3825164.chain_378,blat.proc3825164.chain_381	3
scaffold_17	retained_intron	10037074	10037314	-	asmbl_18223	none	Trinity_GG_11583_c0_g1_i2,blat.proc3825158.chain_1621	2	Trinity_GG_11583_c0_g1_i3,blat.proc3825158.chain_1619	2
scaffold_2	alt_acceptor	884737	884738	+	asmbl_24123,asmbl_24124	none	blat.proc3825164.chain_1623,blat.proc3825164.chain_1624	2	STRG.1564.3	1
scaffold_17	alt_donor	13610398	13610399	+	asmbl_19338	none	STRG.20835.1	1	STRG.20835.2	1
scaffold_12	ends_in_intron	4983279	4983279	+	asmbl_7629	none	blat.proc3825170.chain_3137	1	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3139,blat.proc3825170.chain_3140,blat.proc3825170.chain_3141	7
scaffold_14	alternate_exon	405205	406117	+	asmbl_11750,asmbl_11753,asmbl_11756	none	STRG.16734.3,STRG.16734.4,blat.proc3825172.chain_1508,blat.proc3825172.chain_1515	4	Trinity_GG_26526_c0_g1_i18,Trinity_GG_26526_c0_g1_i4,blat.proc3825172.chain_1503,blat.proc3825172.chain_1514	4
scaffold_20	alt_donor	6308029	6308030	-	asmbl_25837	none	STRG.23228.2	1	STRG.23228.1,blat.proc3825160.chain_328	2
scaffold_6	retained_intron	18784543	18784568	-	asmbl_49281	none	STRG.8554.1,Trinity_GG_4892_c0_g1_i1,blat.proc3825152.chain_1015,blat.proc3825152.chain_989	4	STRG.8554.2	1
scaffold_5	alternate_exon	18697442	18698530	-	asmbl_44856	none	blat.proc3825150.chain_3102	1	STRG.6997.2,STRG.6997.3	2
scaffold_25	alt_acceptor	5158255	5158256	-	asmbl_34246	none	STRG.27443.2,blat.proc3825162.chain_809	2	STRG.27443.1,STRG.27443.3,blat.proc3825162.chain_807,blat.proc3825162.chain_808	4
scaffold_2	ends_in_intron	13900352	13900352	-	asmbl_23536	none	Trinity_GG_1330_c2_g1_i1,blat.proc3825148.chain_2394	2	STRG.2384.1,STRG.2384.2,blat.proc3825148.chain_2389,blat.proc3825148.chain_2390,blat.proc3825148.chain_2391,blat.proc3825148.chain_2392	6
scaffold_18	spliced_intron	11327584	11327791	+	asmbl_20942,asmbl_20943	none	STRG.21676.2,blat.proc3825174.chain_2683	2	STRG.21676.1,blat.proc3825174.chain_2691	2
scaffold_10	retained_intron	9074945	9075599	+	asmbl_3364,asmbl_3366	none	STRG.12659.1,blat.proc3825170.chain_1290,blat.proc3825170.chain_1291	3	STRG.12659.2	1
scaffold_28	starts_in_intron	2119210	2119210	+	asmbl_37329	none	STRG.29370.2	1	STRG.29370.1,blat.proc3825178.chain_2584,blat.proc3825178.chain_2585	3
scaffold_2	ends_in_intron	13446017	13446017	-	asmbl_23520	none	blat.proc3825148.chain_2362	1	STRG.2363.1,blat.proc3825148.chain_2360,blat.proc3825148.chain_2363	3
scaffold_3	alternate_exon	1546634	1547844	+	asmbl_39862	none	STRG.2984.2,blat.proc3825164.chain_3129	2	STRG.2984.1,Trinity_GG_18944_c0_g1_i4,blat.proc3825164.chain_3127	3
scaffold_1	retained_intron	20699413	20699481	+	asmbl_2649	none	STRG.1412.2,blat.proc3825164.chain_1501	2	STRG.1412.1,blat.proc3825164.chain_1500	2
scaffold_5	spliced_intron	5985954	5986256	-	asmbl_44070	none	STRG.6015.1,blat.proc3825150.chain_2217	2	Trinity_GG_3383_c0_g1_i1,Trinity_GG_3383_c2_g1_i1,blat.proc3825150.chain_2218,blat.proc3825150.chain_2220	4
scaffold_4	alt_acceptor	8806927	8806928	-	asmbl_42791	none	STRG.4693.1	1	STRG.4693.2	1
scaffold_2	ends_in_intron	18916322	18916322	-	asmbl_23836,asmbl_23837	none	Trinity_GG_1525_c0_g1_i1,Trinity_GG_1525_c0_g1_i4,blat.proc3825148.chain_2712,blat.proc3825148.chain_2714	4	STRG.2767.1,STRG.2767.2,Trinity_GG_1525_c0_g1_i2,Trinity_GG_1525_c0_g1_i3,blat.proc3825148.chain_2713,blat.proc3825148.chain_2715	6
scaffold_21	retained_intron	11346118	11346201	-	asmbl_28124	none	STRG.24614.4	1	STRG.24614.2,STRG.24614.3	2
scaffold_12	alt_acceptor	3106229	3106230	+	asmbl_7544	none	STRG.14551.2	1	STRG.14551.1	1
scaffold_1	retained_intron	3681459	3682104	+	asmbl_1625,asmbl_1626,asmbl_1627	none	STRG.242.1,STRG.242.2,blat.proc3825164.chain_366,blat.proc3825164.chain_367,blat.proc3825164.chain_368,blat.proc3825164.chain_370,blat.proc3825164.chain_372	7	blat.proc3825164.chain_371	1
scaffold_28	skipped_exon	7746453	7747360	-	asmbl_38410	none	STRG.29848.2	1	STRG.29848.1,blat.proc3825162.chain_3009	2
scaffold_27	starts_in_intron	1552378	1552378	+	asmbl_36024	none	Trinity_GG_33147_c1_g1_i1,blat.proc3825178.chain_1745	2	STRG.28642.1,STRG.28642.2,STRG.28642.3,Trinity_GG_33147_c0_g1_i4,blat.proc3825178.chain_1740,blat.proc3825178.chain_1742,blat.proc3825178.chain_1744	7
scaffold_5	spliced_intron	10290524	10290823	-	asmbl_44335	none	STRG.6329.1,blat.proc3825150.chain_2522	2	blat.proc3825150.chain_2521	1
scaffold_13	starts_in_intron	3526608	3526608	+	asmbl_10705	none	STRG.15676.2	1	STRG.15676.1,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_364	4
scaffold_10	ends_in_intron	5861909	5861909	-	asmbl_4395,asmbl_4396	none	Trinity_GG_6938_c1_g1_i1,Trinity_GG_6938_c1_g1_i3,blat.proc3825154.chain_986,blat.proc3825154.chain_987	4	STRG.12409.2,STRG.12409.3	2
scaffold_11	retained_intron	1985555	1985593	+	asmbl_5351	none	blat.proc3825154.chain_1937	1	STRG.13361.1	1
scaffold_13	ends_in_intron	7090645	7090645	-	asmbl_9850	none	STRG.16012.3,blat.proc3825156.chain_981	2	STRG.16012.1,STRG.16012.2,blat.proc3825156.chain_979,blat.proc3825156.chain_983	4
scaffold_21	alt_acceptor	3979581	3979582	+	asmbl_28494	none	STRG.23982.2	1	STRG.23982.1,blat.proc3825176.chain_1098	2
scaffold_1	retained_intron	12916451	12916553	+	asmbl_2273,asmbl_2274	none	STRG.922.2,blat.proc3825164.chain_1116	2	STRG.922.1,blat.proc3825164.chain_1118,blat.proc3825164.chain_1119	3
scaffold_26	ends_in_intron	10154821	10154821	+	asmbl_35296,asmbl_35297,asmbl_35299	none	STRG.28534.1,STRG.28534.2,blat.proc3825178.chain_1662,blat.proc3825178.chain_1663	4	STRG.28534.3,blat.proc3825178.chain_1664	2
scaffold_27	spliced_intron	313987	314158	-	asmbl_36658,asmbl_36660,asmbl_36661,asmbl_36662,asmbl_36663	none	STRG.28557.1,STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1728	5	STRG.28557.2,Trinity_GG_15948_c0_g1_i7	2
scaffold_25	alt_acceptor	7322164	7322165	-	asmbl_34395	none	STRG.27581.4	1	STRG.27581.1,STRG.27581.2	2
scaffold_14	skipped_exon	3550295	3551903	-	asmbl_13023	none	STRG.16946.2,blat.proc3825156.chain_1729	2	STRG.16946.1,STRG.16946.3,blat.proc3825156.chain_1730	3
scaffold_12	alternate_exon	9227785	9227954	-	asmbl_8659	none	STRG.14924.3,blat.proc3825154.chain_3390	2	STRG.14924.1,STRG.14924.2,blat.proc3825154.chain_3389	3
scaffold_6	spliced_intron	13317856	13318018	+	asmbl_47525	none	STRG.8092.2,Trinity_GG_21760_c0_g1_i2,blat.proc3825168.chain_600	3	STRG.8092.1,Trinity_GG_21760_c0_g1_i1,blat.proc3825168.chain_601	3
scaffold_28	alt_acceptor	7255243	7255244	+	asmbl_37656,asmbl_37658	none	STRG.29793.2,STRG.29793.4,Trinity_GG_33812_c0_g1_i1,blat.proc3825178.chain_2947	4	STRG.29793.1,STRG.29793.3,Trinity_GG_33812_c0_g1_i2,blat.proc3825178.chain_2945	4
scaffold_2	alt_donor	17971245	17971246	+	asmbl_25212	none	STRG.2689.2	1	STRG.2689.1,blat.proc3825164.chain_2961,blat.proc3825164.chain_2962,blat.proc3825164.chain_2963,blat.proc3825164.chain_2964	5
scaffold_17	spliced_intron	13072493	13072592	-	asmbl_18349	none	blat.proc3825158.chain_1807	1	blat.proc3825158.chain_1805	1
scaffold_20	starts_in_intron	334445	334445	-	asmbl_25489	none	STRG.22725.1,blat.proc3825158.chain_3556	2	STRG.22725.2	1
scaffold_4	alt_donor	6948539	6948540	+	asmbl_41434,asmbl_41435	none	STRG.4536.2,Trinity_GG_19782_c0_g1_i2,blat.proc3825166.chain_912	3	STRG.4536.1,STRG.4536.3	2
scaffold_15	alt_acceptor	15414257	15414258	+	asmbl_15777,asmbl_15778,asmbl_15781,asmbl_15784,asmbl_15785	none	STRG.18953.1,STRG.18953.5,STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3607,blat.proc3825172.chain_3610,blat.proc3825172.chain_3611	7	STRG.18953.4,blat.proc3825172.chain_3608,blat.proc3825172.chain_3609,blat.proc3825172.chain_3612	4
scaffold_5	ends_in_intron	13802230	13802230	-	asmbl_44562	none	Trinity_GG_3723_c0_g2_i2,blat.proc3825150.chain_2816	2	STRG.6602.3,blat.proc3825150.chain_2811,blat.proc3825150.chain_2815	3
scaffold_14	spliced_intron	2888654	2888781	-	asmbl_12979,asmbl_12980	none	STRG.16887.1,STRG.16887.3,blat.proc3825156.chain_1637	3	blat.proc3825156.chain_1636	1
scaffold_15	alt_acceptor	13982374	13982375	-	asmbl_14693,asmbl_14694	none	STRG.18830.2,Trinity_GG_10577_c0_g1_i2,blat.proc3825156.chain_3684	3	blat.proc3825156.chain_3683	1
scaffold_18	starts_in_intron	5814617	5814617	+	asmbl_20611	none	Trinity_GG_29042_c0_g1_i1,blat.proc3825174.chain_2252	2	STRG.21335.1,blat.proc3825174.chain_2253	2
scaffold_11	ends_in_intron	8479712	8479712	+	asmbl_5789	none	Trinity_GG_24888_c0_g1_i2,blat.proc3825170.chain_2293	2	STRG.13864.1,STRG.13864.2,STRG.13864.3,Trinity_GG_24888_c0_g1_i1,Trinity_GG_24888_c0_g1_i4,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2289,blat.proc3825170.chain_2290,blat.proc3825170.chain_2291,blat.proc3825170.chain_2292	10
scaffold_8	alt_donor	5554091	5554092	-	asmbl_51839	none	blat.proc3825152.chain_2233	1	blat.proc3825152.chain_2236	1
scaffold_12	spliced_intron	9987993	9988214	-	asmbl_8709,asmbl_8712	none	STRG.14972.3,blat.proc3825154.chain_3439,blat.proc3825154.chain_3440	3	Trinity_GG_8331_c0_g1_i3,blat.proc3825154.chain_3437	2
scaffold_7	retained_intron	8296258	8297094	-	asmbl_50998	none	Trinity_GG_5116_c0_g1_i4,blat.proc3825152.chain_1455	2	STRG.9066.1,blat.proc3825152.chain_1457	2
scaffold_13	alternate_exon	11585584	11585749	+	asmbl_11295,asmbl_11296,asmbl_11297	none	blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035	3	STRG.16316.6,blat.proc3825172.chain_1031	2
scaffold_27	alt_donor	5927578	5927579	-	asmbl_37042	none	STRG.29001.1	1	STRG.29001.2,blat.proc3825162.chain_2239,blat.proc3825162.chain_2240	3
scaffold_3	starts_in_intron	14775468	14775468	-	asmbl_39425	none	blat.proc3825150.chain_41	1	STRG.3822.1,STRG.3822.2,blat.proc3825150.chain_33,blat.proc3825150.chain_35	4
scaffold_20	alt_donor	254204	254205	-	asmbl_25477	none	STRG.22719.4	1	STRG.22719.2,STRG.22719.3	2
scaffold_13	ends_in_intron	9921292	9921292	-	asmbl_10046	none	STRG.16231.1	1	blat.proc3825156.chain_1128	1
scaffold_18	retained_intron	7661288	7661516	+	asmbl_20763,asmbl_20766	none	STRG.21471.2,STRG.21471.3	2	STRG.21471.1,STRG.21471.4,STRG.21471.5,STRG.21471.6	4
scaffold_8	skipped_exon	11741924	11743764	-	asmbl_52162	none	STRG.10376.1,blat.proc3825152.chain_2544	2	STRG.10376.2,blat.proc3825152.chain_2543	2
scaffold_3	starts_in_intron	17365376	17365376	-	asmbl_39548	none	STRG.3971.4	1	STRG.3971.1,STRG.3971.2,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_179,blat.proc3825150.chain_181,blat.proc3825150.chain_182,blat.proc3825150.chain_183	9
scaffold_9	alt_donor	5530735	5530736	+	asmbl_54050	none	Trinity_GG_23507_c1_g1_i1,blat.proc3825168.chain_3646	2	STRG.11135.1,STRG.11135.2,Trinity_GG_23507_c1_g1_i2,blat.proc3825168.chain_3645	4
scaffold_4	spliced_intron	8746476	8746565	+	asmbl_41574,asmbl_41576	none	STRG.4690.1,blat.proc3825166.chain_1121	2	Trinity_GG_19910_c0_g1_i3,blat.proc3825166.chain_1120	2
scaffold_3	alt_acceptor	5916625	5916626	-	asmbl_38870	none	STRG.3250.1,blat.proc3825148.chain_3024	2	STRG.3250.2	1
scaffold_8	skipped_exon	4665045	4665532	-	asmbl_51786	none	blat.proc3825152.chain_2182	1	STRG.9927.1,blat.proc3825152.chain_2183	2
scaffold_7	retained_intron	9921560	9921694	-	asmbl_51102	none	Trinity_GG_5187_c0_g1_i3,blat.proc3825152.chain_1567	2	STRG.9202.1,blat.proc3825152.chain_1568	2
scaffold_6	starts_in_intron	11558404	11558404	-	asmbl_48764	none	STRG.7952.2	1	STRG.7952.1,STRG.7952.3,blat.proc3825152.chain_350,blat.proc3825152.chain_351	4
scaffold_28	alternate_exon	5612961	5613087	-	asmbl_38299,asmbl_38301,asmbl_38302,asmbl_38303,asmbl_38304	none	STRG.29697.1,STRG.29697.2,STRG.29697.3,STRG.29697.6,Trinity_GG_16664_c0_g1_i8,Trinity_GG_16664_c0_g1_i9,blat.proc3825162.chain_2897,blat.proc3825162.chain_2899,blat.proc3825162.chain_2901,blat.proc3825162.chain_2902	10	STRG.29697.5,Trinity_GG_16664_c0_g1_i1,blat.proc3825162.chain_2900	3
scaffold_7	retained_intron	12649718	12649839	-	asmbl_51260	none	blat.proc3825152.chain_1732	1	STRG.9385.1,STRG.9385.2,STRG.9385.3,blat.proc3825152.chain_1733	4
scaffold_18	spliced_intron	1500051	1500145	+	asmbl_20354,asmbl_20356	none	STRG.21034.1,Trinity_GG_28824_c0_g1_i1,blat.proc3825174.chain_1850,blat.proc3825174.chain_1851	4	Trinity_GG_28824_c0_g1_i2,blat.proc3825174.chain_1849	2
scaffold_1	alt_acceptor	21931435	21931436	-	asmbl_1229	none	STRG.1473.2	1	STRG.1473.1	1
scaffold_6	retained_exon	2880868	2881101	-	asmbl_48180	none	STRG.7287.2,blat.proc3825150.chain_3407	2	STRG.7287.3,blat.proc3825150.chain_3406	2
scaffold_13	ends_in_intron	2293350	2293350	+	asmbl_10591	none	blat.proc3825172.chain_247	1	STRG.15546.1,blat.proc3825172.chain_244,blat.proc3825172.chain_245,blat.proc3825172.chain_246	4
scaffold_23	alternate_exon	8811466	8811512	+	asmbl_31781	none	STRG.26148.2,blat.proc3825176.chain_3119	2	STRG.26148.3	1
scaffold_11	skipped_exon	9652425	9653452	-	asmbl_6943	none	STRG.13984.2	1	STRG.13984.1,blat.proc3825154.chain_2513,blat.proc3825154.chain_2514	3
scaffold_23	retained_intron	1399387	1399546	-	asmbl_30641	none	Trinity_GG_14278_c0_g1_i2,blat.proc3825160.chain_2680	2	STRG.25613.1,blat.proc3825160.chain_2679	2
scaffold_6	alt_acceptor	10867054	10867055	+	asmbl_47300	none	STRG.7900.2,blat.proc3825168.chain_362	2	STRG.7900.1,blat.proc3825168.chain_361	2
scaffold_22	alternate_exon	4568613	4568702	+	asmbl_30019	none	blat.proc3825176.chain_1978	1	STRG.24886.1,blat.proc3825176.chain_1979,blat.proc3825176.chain_1980	3
scaffold_14	retained_intron	4782236	4782441	-	asmbl_13073,asmbl_13074	none	STRG.17010.2,STRG.17010.3	2	STRG.17010.1,blat.proc3825156.chain_1840,blat.proc3825156.chain_1841	3
scaffold_27	skipped_exon	1774172	1774783	+	asmbl_36038	none	STRG.28669.1	1	STRG.28669.2,Trinity_GG_33182_c0_g1_i1,Trinity_GG_33182_c0_g1_i2	3
scaffold_20	alt_acceptor	2113682	2113683	+	asmbl_26471	none	STRG.22951.1,blat.proc3825176.chain_146	2	STRG.22951.2	1
scaffold_4	starts_in_intron	12679906	12679906	-	asmbl_42946	none	blat.proc3825150.chain_1094	1	STRG.4907.1,STRG.4907.2,Trinity_GG_2733_c0_g1_i1,blat.proc3825150.chain_1093,blat.proc3825150.chain_1096	5
scaffold_13	alternate_exon	2653585	2656469	-	asmbl_9467,asmbl_9470,asmbl_9471	none	STRG.15580.1,blat.proc3825156.chain_376,blat.proc3825156.chain_377,blat.proc3825156.chain_378	4	Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_380	2
scaffold_12	starts_in_intron	4788187	4788187	-	asmbl_8453,asmbl_8454	none	blat.proc3825154.chain_3148,blat.proc3825154.chain_3149	2	STRG.14660.4,blat.proc3825154.chain_3147,blat.proc3825154.chain_3153	3
scaffold_13	starts_in_intron	356703	356703	+	asmbl_10476,asmbl_10478	none	STRG.15441.1,Trinity_GG_25794_c0_g1_i2,Trinity_GG_25794_c0_g1_i3,blat.proc3825172.chain_152,blat.proc3825172.chain_153	5	blat.proc3825172.chain_154	1
scaffold_8	starts_in_intron	9468693	9468693	-	asmbl_52039	none	blat.proc3825152.chain_2505	1	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2504	6
scaffold_13	alt_acceptor	4655372	4655373	+	asmbl_10819,asmbl_10820	none	STRG.15801.3,blat.proc3825172.chain_553,blat.proc3825172.chain_554	3	STRG.15801.1,STRG.15801.2	2
scaffold_5	ends_in_intron	12556869	12556869	-	asmbl_44471	none	Trinity_GG_3647_c0_g1_i1,blat.proc3825150.chain_2677	2	STRG.6494.1,Trinity_GG_3647_c0_g1_i3,blat.proc3825150.chain_2679	3
scaffold_3	spliced_intron	11997571	11997651	+	asmbl_40389	none	STRG.3623.1	1	Trinity_GG_19346_c0_g1_i1,blat.proc3825166.chain_115	2
scaffold_5	alt_acceptor	18713843	18713844	-	asmbl_44864	none	STRG.6999.1,Trinity_GG_3901_c0_g1_i1,blat.proc3825150.chain_3113	3	STRG.6999.2,STRG.6999.3,Trinity_GG_3901_c0_g1_i2,blat.proc3825150.chain_3112	4
scaffold_10	starts_in_intron	7253499	7253499	-	asmbl_4534,asmbl_4535	none	blat.proc3825154.chain_1072,blat.proc3825154.chain_1076	2	STRG.12538.1,STRG.12538.2,blat.proc3825154.chain_1073,blat.proc3825154.chain_1074,blat.proc3825154.chain_1075	5
scaffold_4	alt_acceptor	4420007	4420008	+	asmbl_41263,asmbl_41265	none	STRG.4340.1,STRG.4340.3,Trinity_GG_19730_c0_g1_i3,blat.proc3825166.chain_796	4	STRG.4340.2	1
scaffold_17	skipped_exon	9570215	9571436	+	asmbl_19118	none	STRG.20579.1,blat.proc3825174.chain_1453	2	STRG.20579.2,blat.proc3825174.chain_1454	2
scaffold_1	retained_intron	12690151	12690339	-	asmbl_744,asmbl_747	none	STRG.893.3,STRG.893.4,Trinity_GG_464_c0_g1_i1,blat.proc3825148.chain_879	4	STRG.893.1,STRG.893.2,blat.proc3825148.chain_876	3
scaffold_13	retained_intron	220491	221239	+	asmbl_10463,asmbl_10464	none	blat.proc3825172.chain_173,blat.proc3825172.chain_175	2	STRG.15430.1,blat.proc3825172.chain_174	2
scaffold_20	retained_intron	253640	253910	-	asmbl_25479	none	STRG.22719.1	1	STRG.22719.2	1
scaffold_25	retained_exon	6770175	6770224	+	asmbl_33646	none	STRG.27542.2	1	STRG.27542.1	1
scaffold_12	retained_exon	10187771	10187904	-	asmbl_8733,asmbl_8734	none	STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3520	3	STRG.14994.1,STRG.14994.2,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516,blat.proc3825154.chain_3517	6
scaffold_13	alt_donor	3323628	3323629	-	asmbl_9531	none	STRG.15640.2	1	STRG.15640.1,Trinity_GG_8777_c0_g1_i1,Trinity_GG_8777_c0_g1_i2,blat.proc3825156.chain_517,blat.proc3825156.chain_518	5
scaffold_17	ends_in_intron	1668807	1668807	+	asmbl_18622	none	blat.proc3825174.chain_888	1	STRG.20000.1,STRG.20000.2,blat.proc3825174.chain_887,blat.proc3825174.chain_889	4
scaffold_6	starts_in_intron	3041288	3041288	-	asmbl_48217	none	blat.proc3825150.chain_3453	1	STRG.7310.1,STRG.7310.2,STRG.7310.3,blat.proc3825150.chain_3455,blat.proc3825150.chain_3456,blat.proc3825150.chain_3457	6
scaffold_8	retained_exon	9128242	9128356	-	asmbl_52008	none	STRG.10172.1	1	STRG.10172.2,blat.proc3825152.chain_2387,blat.proc3825152.chain_2389	3
scaffold_6	spliced_intron	13064215	13064365	-	asmbl_48872	none	STRG.8063.1	1	STRG.8063.2,STRG.8063.3,STRG.8063.4,blat.proc3825152.chain_455	4
scaffold_11	starts_in_intron	1101807	1101807	-	asmbl_6412	none	blat.proc3825154.chain_1802	1	blat.proc3825154.chain_1803	1
scaffold_14	skipped_exon	15584809	15585856	+	asmbl_12632	none	STRG.17811.1	1	STRG.17811.2,STRG.17811.3,STRG.17811.5,STRG.17811.6,STRG.17811.7,blat.proc3825172.chain_2554	6
scaffold_2	alt_donor	2300474	2300475	-	asmbl_22885	none	STRG.1674.3	1	STRG.1674.4	1
scaffold_15	retained_intron	2894311	2894447	-	asmbl_14062	none	STRG.18078.2,blat.proc3825156.chain_2906	2	STRG.18078.3	1
scaffold_1	spliced_intron	20024322	20024343	-	asmbl_1163	none	blat.proc3825148.chain_1377	1	STRG.1371.1,Trinity_GG_749_c1_g1_i1,blat.proc3825148.chain_1378	3
scaffold_9	alternate_exon	6905140	6905233	-	asmbl_55095	none	Trinity_GG_6207_c0_g1_i5,blat.proc3825152.chain_3441	2	STRG.11202.2,blat.proc3825152.chain_3442	2
scaffold_18	ends_in_intron	5788100	5788100	+	asmbl_20604,asmbl_20605,asmbl_20606	none	blat.proc3825174.chain_2310,blat.proc3825174.chain_2311,blat.proc3825174.chain_2312	3	STRG.21328.2,blat.proc3825174.chain_2314	2
scaffold_6	alt_acceptor	6026252	6026253	+	asmbl_46987,asmbl_46989	none	STRG.7554.1,STRG.7554.2,blat.proc3825166.chain_3718	3	STRG.7554.3	1
scaffold_18	retained_intron	8862547	8863588	-	asmbl_20025,asmbl_20026,asmbl_20028,asmbl_20031,asmbl_20032	none	STRG.21549.1,Trinity_GG_11998_c0_g1_i1,blat.proc3825158.chain_2353,blat.proc3825158.chain_2354,blat.proc3825158.chain_2361,blat.proc3825158.chain_2362	6	STRG.21549.2,blat.proc3825158.chain_2355,blat.proc3825158.chain_2358,blat.proc3825158.chain_2359	4
scaffold_57	starts_in_intron	10934	10934	-	asmbl_46590	none	blat.proc3825162.chain_3250	1	STRG.30080.1,blat.proc3825162.chain_3248,blat.proc3825162.chain_3249	3
scaffold_4	starts_in_intron	15163856	15163856	+	asmbl_41931,asmbl_41932	none	STRG.5117.2,blat.proc3825166.chain_1548,blat.proc3825166.chain_1549	3	STRG.5117.1,blat.proc3825166.chain_1550	2
scaffold_10	starts_in_intron	13320124	13320124	-	asmbl_4874	none	blat.proc3825154.chain_1503	1	STRG.12938.1	1
scaffold_28	alternate_exon	3732177	3732331	-	asmbl_38168	none	blat.proc3825162.chain_2733	1	blat.proc3825162.chain_2739	1
scaffold_18	skipped_exon	11912305	11913975	+	asmbl_20956	none	STRG.21695.1	1	STRG.21695.2,blat.proc3825174.chain_2722	2
scaffold_8	alt_acceptor	3062714	3062715	-	asmbl_51726	none	STRG.9824.2	1	STRG.9824.1	1
scaffold_22	retained_exon	686343	686402	+	asmbl_29878,asmbl_29879	none	STRG.24720.1,Trinity_GG_30975_c0_g1_i1,blat.proc3825176.chain_1840	3	STRG.24720.2,Trinity_GG_30975_c0_g1_i2,blat.proc3825176.chain_1839	3
scaffold_7	alt_acceptor	12422436	12422437	+	asmbl_50260,asmbl_50261	none	STRG.9347.1,STRG.9347.2,blat.proc3825168.chain_1863,blat.proc3825168.chain_1864	4	STRG.9347.3	1
scaffold_6	ends_in_intron	9138861	9138861	+	asmbl_47214	none	blat.proc3825168.chain_213	1	STRG.7790.4,blat.proc3825168.chain_210,blat.proc3825168.chain_211,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_217,blat.proc3825168.chain_219	8
scaffold_4	spliced_intron	6300842	6302966	+	asmbl_41389,asmbl_41390,asmbl_41391	none	STRG.4503.1,STRG.4503.2,Trinity_GG_19783_c0_g1_i1,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_920,blat.proc3825166.chain_922	8	blat.proc3825166.chain_919,blat.proc3825166.chain_921	2
scaffold_20	starts_in_intron	11672642	11672642	-	asmbl_26175	none	blat.proc3825160.chain_747	1	STRG.23670.1,STRG.23670.3,blat.proc3825160.chain_748,blat.proc3825160.chain_749,blat.proc3825160.chain_750	5
scaffold_10	alt_acceptor	17117717	17117718	+	asmbl_3744	none	STRG.13156.3	1	STRG.13156.1,blat.proc3825170.chain_1736	2
scaffold_10	alt_acceptor	17701191	17701192	+	asmbl_3796	none	blat.proc3825154.chain_1792	1	blat.proc3825154.chain_1793	1
scaffold_14	alternate_exon	9297977	9298058	-	asmbl_13377,asmbl_13379	none	STRG.17341.4,blat.proc3825156.chain_2166	2	STRG.17341.1,STRG.17341.2,STRG.17341.3,blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2172,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	11
scaffold_19	spliced_intron	12487325	12488732	-	asmbl_22502	none	STRG.22589.2,Trinity_GG_12561_c0_g1_i3,blat.proc3825158.chain_3345	3	Trinity_GG_12561_c0_g2_i1,Trinity_GG_12561_c1_g1_i1,blat.proc3825158.chain_3348,blat.proc3825158.chain_3349	4
scaffold_20	alternate_exon	10006280	10006353	+	asmbl_26919	none	STRG.23547.2	1	STRG.23547.1,Trinity_GG_30325_c0_g1_i1,blat.proc3825176.chain_711	3
scaffold_2	retained_intron	8857714	8857736	+	asmbl_24648	none	STRG.2136.1	1	STRG.2136.2	1
scaffold_26	retained_exon	9843386	9843402	+	asmbl_35279,asmbl_35289	none	STRG.28546.2,STRG.28546.3,blat.proc3825178.chain_1580	3	STRG.28546.1,blat.proc3825178.chain_1577,blat.proc3825178.chain_1579	3
scaffold_17	alternate_exon	2629819	2630005	+	asmbl_18675	none	STRG.20060.4	1	blat.proc3825174.chain_928	1
scaffold_13	spliced_intron	7216462	7216557	+	asmbl_11019,asmbl_11021,asmbl_11022,asmbl_11024,asmbl_11025,asmbl_11026,asmbl_11027	none	STRG.16019.1,blat.proc3825172.chain_809,blat.proc3825172.chain_810,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_814,blat.proc3825172.chain_815,blat.proc3825172.chain_816	8	blat.proc3825172.chain_811	1
scaffold_9	alt_acceptor	12335972	12335973	-	asmbl_55372	none	STRG.11557.1	1	STRG.11557.2	1
scaffold_12	skipped_exon	3330306	3331370	+	asmbl_7547	none	STRG.14555.2,Trinity_GG_25356_c0_g1_i2,blat.proc3825170.chain_3110	3	STRG.14555.1,STRG.14555.3,STRG.14555.5,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i3,blat.proc3825170.chain_3112	6
scaffold_20	spliced_intron	7268277	7268638	+	asmbl_26717	none	STRG.23297.2,blat.proc3825176.chain_477	2	STRG.23297.1,STRG.23297.3,blat.proc3825176.chain_475	3
scaffold_13	alt_acceptor	739026	739027	+	asmbl_10514	none	STRG.15461.1,blat.proc3825172.chain_193	2	STRG.15461.3	1
scaffold_21	retained_intron	254930	255185	-	asmbl_27289,asmbl_27290,asmbl_27292,asmbl_27293	none	STRG.23725.4,blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	4	STRG.23725.2,STRG.23725.3,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_807,blat.proc3825160.chain_809	6
scaffold_5	spliced_intron	7707898	7707967	+	asmbl_45500,asmbl_45503	none	STRG.6149.1,STRG.6149.2,blat.proc3825166.chain_2365	3	blat.proc3825166.chain_2364	1
scaffold_7	retained_exon	4392465	4392468	+	asmbl_49733,asmbl_49734	none	blat.proc3825168.chain_1270,blat.proc3825168.chain_1271	2	Trinity_GG_22151_c0_g1_i1,Trinity_GG_22151_c0_g1_i3	2
scaffold_14	spliced_intron	4699179	4699324	-	asmbl_13065	none	STRG.17005.2	1	STRG.17005.1,Trinity_GG_9545_c0_g1_i1,blat.proc3825156.chain_1836	3
scaffold_23	alternate_exon	6862189	6867134	-	asmbl_30983	none	STRG.26018.3	1	Trinity_GG_14570_c0_g1_i10,blat.proc3825160.chain_3200	2
scaffold_5	alternate_exon	3592653	3592810	-	asmbl_43923,asmbl_43925	none	STRG.5831.2,STRG.5831.4,blat.proc3825150.chain_2046	3	STRG.5831.1	1
scaffold_14	retained_intron	15693864	15693986	-	asmbl_13739	none	STRG.17812.1	1	STRG.17812.2	1
scaffold_1	starts_in_intron	18279861	18279861	-	asmbl_1098	none	STRG.1279.2	1	blat.proc3825148.chain_1284	1
scaffold_6	retained_intron	2908621	2908725	+	asmbl_46790	none	STRG.7298.2	1	Trinity_GG_21339_c0_g1_i1,Trinity_GG_21339_c0_g1_i9,blat.proc3825166.chain_3530,blat.proc3825166.chain_3531	4
scaffold_8	retained_intron	8733303	8733398	+	asmbl_53028	none	STRG.10134.1,Trinity_GG_22941_c0_g1_i2,Trinity_GG_22941_c1_g1_i1,blat.proc3825168.chain_2680,blat.proc3825168.chain_2681	5	STRG.10134.3,STRG.10134.4	2
scaffold_6	alt_donor	10898595	10898596	+	asmbl_47303,asmbl_47308	none	STRG.7907.2,Trinity_GG_21655_c0_g1_i1,blat.proc3825168.chain_381	3	STRG.7907.1,STRG.7907.3,blat.proc3825168.chain_379,blat.proc3825168.chain_382	4
scaffold_13	retained_exon	6433155	6433273	-	asmbl_9795	none	STRG.15943.2	1	STRG.15943.1,blat.proc3825156.chain_845,blat.proc3825156.chain_846,blat.proc3825156.chain_847,blat.proc3825156.chain_850	5
scaffold_17	alternate_exon	8570557	8570755	+	asmbl_18998	none	STRG.20468.2,blat.proc3825174.chain_1314	2	STRG.20468.1,Trinity_GG_28526_c0_g1_i1	2
scaffold_20	spliced_intron	8936755	8936837	-	asmbl_26015	none	STRG.23433.2	1	STRG.23433.1,STRG.23433.3	2
scaffold_9	spliced_intron	6901990	6902110	-	asmbl_55087,asmbl_55088,asmbl_55090	none	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3389,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	5	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3394	4
scaffold_10	alt_donor	5010323	5010324	-	asmbl_4333	none	STRG.12326.1,blat.proc3825154.chain_850	2	STRG.12326.2,blat.proc3825154.chain_849	2
scaffold_9	retained_exon	16282311	16282358	-	asmbl_55564	none	STRG.11778.2,blat.proc3825154.chain_238	2	STRG.11778.1,blat.proc3825154.chain_239	2
scaffold_9	alt_acceptor	17743197	17743198	+	asmbl_54643,asmbl_54645	none	STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_564	3	blat.proc3825170.chain_566	1
scaffold_25	ends_in_intron	6299833	6299833	+	asmbl_33608	none	STRG.27515.3,blat.proc3825178.chain_562,blat.proc3825178.chain_563	3	STRG.27515.1,STRG.27515.2,blat.proc3825178.chain_561	3
scaffold_5	alternate_exon	16292216	16295773	+	asmbl_46076,asmbl_46081	none	STRG.6827.2,STRG.6827.3,blat.proc3825166.chain_3002	3	Trinity_GG_21041_c0_g1_i1,blat.proc3825166.chain_3001	2
scaffold_11	alt_donor	8722255	8722256	+	asmbl_5830,asmbl_5832,asmbl_5833	none	STRG.13892.1,STRG.13892.2,STRG.13892.3,Trinity_GG_24977_c0_g1_i2,Trinity_GG_24977_c0_g1_i3,Trinity_GG_24977_c0_g1_i6,blat.proc3825170.chain_2457,blat.proc3825170.chain_2459	8	STRG.13892.4,Trinity_GG_24977_c0_g1_i10,blat.proc3825170.chain_2458	3
scaffold_15	alternate_exon	1963609	1963728	+	asmbl_15043	none	blat.proc3825172.chain_2697	1	STRG.17992.1,STRG.17992.2	2
scaffold_26	alternate_exon	6704291	6704414	-	asmbl_35697	none	blat.proc3825162.chain_1601	1	STRG.28371.3	1
scaffold_24	alternate_exon	6445150	6445290	+	asmbl_32315	none	blat.proc3825176.chain_3620	1	STRG.26699.1,STRG.26699.2,blat.proc3825176.chain_3610,blat.proc3825176.chain_3613,blat.proc3825176.chain_3617,blat.proc3825176.chain_3618	6
scaffold_6	spliced_intron	19075642	19075763	+	asmbl_47870,asmbl_47873	none	STRG.8575.3,Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_952	3	STRG.8575.1,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i5,Trinity_GG_21983_c0_g1_i6,blat.proc3825168.chain_948,blat.proc3825168.chain_949,blat.proc3825168.chain_951	7
scaffold_19	starts_in_intron	12200178	12200178	-	asmbl_22466	none	Trinity_GG_12531_c0_g1_i1,blat.proc3825158.chain_3287	2	STRG.22549.1,STRG.22549.2,Trinity_GG_12531_c0_g1_i2	3
scaffold_27	retained_exon	2830935	2831768	+	asmbl_36129	none	STRG.28768.3,blat.proc3825178.chain_1936	2	STRG.28768.1,STRG.28768.2,blat.proc3825178.chain_1932,blat.proc3825178.chain_1934	4
scaffold_15	retained_exon	7303426	7303476	+	asmbl_15286	none	STRG.18326.1,blat.proc3825172.chain_2919	2	STRG.18326.2,blat.proc3825172.chain_2920	2
scaffold_4	retained_exon	10452291	10452441	-	asmbl_42848,asmbl_42849,asmbl_42854	none	STRG.4796.1,STRG.4796.2,blat.proc3825150.chain_912,blat.proc3825150.chain_913	4	blat.proc3825150.chain_914	1
scaffold_14	alt_acceptor	3588783	3588784	+	asmbl_11954,asmbl_11955	none	STRG.16942.1,blat.proc3825172.chain_1710	2	STRG.16942.3	1
scaffold_14	retained_intron	11676499	11677256	-	asmbl_13519	none	STRG.17513.3,blat.proc3825156.chain_2348	2	STRG.17513.1,blat.proc3825156.chain_2349	2
scaffold_6	alt_acceptor	10365798	10365799	-	asmbl_48686	none	STRG.7872.1,blat.proc3825152.chain_247	2	STRG.7872.2	1
scaffold_3	alt_donor	16176419	16176420	-	asmbl_39488	none	STRG.3898.2	1	STRG.3898.1,blat.proc3825150.chain_78	2
scaffold_22	skipped_exon	4239153	4240805	-	asmbl_29214,asmbl_29215	none	STRG.24845.2,Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065	3	STRG.24845.1,STRG.24845.3,blat.proc3825160.chain_2066,blat.proc3825160.chain_2067,blat.proc3825160.chain_2068	5
scaffold_13	starts_in_intron	2659110	2659110	-	asmbl_9475	none	Trinity_GG_8693_c0_g1_i3,blat.proc3825156.chain_387	2	STRG.15572.1,blat.proc3825156.chain_385,blat.proc3825156.chain_386	3
scaffold_25	alt_donor	3086843	3086844	-	asmbl_34092,asmbl_34093,asmbl_34095	none	STRG.27251.2,STRG.27251.3,STRG.27251.5	3	blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555,blat.proc3825162.chain_559	4
scaffold_24	ends_in_intron	9082497	9082497	+	asmbl_32493	none	Trinity_GG_32214_c0_g2_i1,blat.proc3825178.chain_153	2	STRG.26950.2,Trinity_GG_32214_c0_g1_i4,blat.proc3825178.chain_146,blat.proc3825178.chain_150	4
scaffold_21	retained_intron	1654934	1655150	+	asmbl_28350	none	blat.proc3825176.chain_1056	1	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058,blat.proc3825176.chain_1059	6
scaffold_7	spliced_intron	12412941	12413129	+	asmbl_50258	none	STRG.9345.1,Trinity_GG_22499_c0_g1_i2,blat.proc3825168.chain_1868	3	Trinity_GG_22499_c0_g1_i1,blat.proc3825168.chain_1869	2
scaffold_4	spliced_intron	158350	158690	+	asmbl_41088	none	STRG.4113.1,blat.proc3825166.chain_577	2	Trinity_GG_19603_c0_g1_i2,Trinity_GG_19603_c1_g1_i1,blat.proc3825166.chain_576,blat.proc3825166.chain_578	4
scaffold_9	alt_acceptor	5296614	5296615	+	asmbl_54022,asmbl_54023,asmbl_54025	none	STRG.11112.1,STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6	blat.proc3825168.chain_3571	1
scaffold_5	retained_intron	5985954	5986256	-	asmbl_44069	none	Trinity_GG_3383_c0_g1_i1,Trinity_GG_3383_c2_g1_i1,blat.proc3825150.chain_2218,blat.proc3825150.chain_2220	4	STRG.6015.1,blat.proc3825150.chain_2217	2
scaffold_13	retained_intron	2653329	2653423	-	asmbl_9472	none	blat.proc3825156.chain_379	1	Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_380	2
scaffold_27	alternate_exon	1609080	1609088	-	asmbl_36771	none	Trinity_GG_16047_c1_g1_i1,blat.proc3825162.chain_1918	2	STRG.28650.1	1
scaffold_3	alternate_exon	1656572	1661859	-	asmbl_38724	none	blat.proc3825148.chain_2802	1	STRG.2992.2,blat.proc3825148.chain_2801	2
scaffold_25	ends_in_intron	5777637	5777637	+	asmbl_33576	none	blat.proc3825178.chain_589	1	STRG.27472.1,STRG.27472.2,blat.proc3825178.chain_583	3
scaffold_19	retained_intron	6213363	6213529	+	asmbl_21402	none	blat.proc3825174.chain_3105	1	STRG.22153.2,blat.proc3825174.chain_3107	2
scaffold_11	starts_in_intron	2472414	2472414	-	asmbl_6505	none	STRG.13395.1	1	STRG.13395.2	1
scaffold_14	starts_in_intron	12504473	12504473	-	asmbl_13571	none	blat.proc3825156.chain_2342	1	STRG.17570.1,blat.proc3825156.chain_2341	2
scaffold_26	alternate_exon	4814113	4814177	-	asmbl_35596	none	STRG.28201.2	1	STRG.28201.1,blat.proc3825162.chain_1461	2
scaffold_28	spliced_intron	232681	232757	+	asmbl_37255,asmbl_37257,asmbl_37258,asmbl_37259,asmbl_37260	none	STRG.29253.1,STRG.29253.2,blat.proc3825178.chain_2480,blat.proc3825178.chain_2481,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483	6	blat.proc3825178.chain_2485	1
scaffold_12	retained_exon	14041360	14041409	+	asmbl_8043	none	STRG.15233.1,Trinity_GG_25691_c0_g1_i2,blat.proc3825170.chain_3714	3	STRG.15233.2,Trinity_GG_25691_c0_g1_i1,blat.proc3825170.chain_3715	3
scaffold_22	alt_acceptor	10985938	10985939	-	asmbl_29639	none	blat.proc3825160.chain_2618	1	STRG.25437.1,STRG.25437.3,blat.proc3825160.chain_2619	3
scaffold_13	retained_intron	2338672	2339178	+	asmbl_10596	none	STRG.15564.8	1	STRG.15564.10,STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.9,blat.proc3825172.chain_222,blat.proc3825172.chain_224	8
scaffold_25	spliced_intron	5158234	5158408	-	asmbl_34244,asmbl_34250	none	STRG.27443.1,blat.proc3825162.chain_807,blat.proc3825162.chain_808	3	blat.proc3825162.chain_805	1
scaffold_5	spliced_intron	13664802	13665247	-	asmbl_44545,asmbl_44546	none	STRG.6585.1,STRG.6585.2,blat.proc3825150.chain_2670,blat.proc3825150.chain_2673,blat.proc3825150.chain_2674	5	blat.proc3825150.chain_2672	1
scaffold_22	spliced_intron	7787082	7787160	-	asmbl_29423	none	STRG.25124.1,blat.proc3825160.chain_2275	2	STRG.25124.2,blat.proc3825160.chain_2276	2
scaffold_2	retained_intron	15700571	15700762	+	asmbl_25071	none	Trinity_GG_18721_c0_g1_i2,blat.proc3825164.chain_2756	2	STRG.2526.1,STRG.2526.2,blat.proc3825164.chain_2753,blat.proc3825164.chain_2755	4
scaffold_7	spliced_intron	4915680	4915757	+	asmbl_49762	none	STRG.8836.3	1	STRG.8836.1,STRG.8836.2,blat.proc3825168.chain_1316	3
scaffold_12	retained_intron	7172893	7173215	+	asmbl_7722	none	blat.proc3825170.chain_3303	1	STRG.14794.2,blat.proc3825170.chain_3304,blat.proc3825170.chain_3305	3
scaffold_13	spliced_intron	16048795	16048914	+	asmbl_11547	none	STRG.16642.1	1	STRG.16642.3	1
scaffold_13	alt_acceptor	5129984	5129985	+	asmbl_10827,asmbl_10828,asmbl_10829	none	STRG.15817.2,STRG.15817.3,blat.proc3825172.chain_559	3	STRG.15817.1,blat.proc3825172.chain_557,blat.proc3825172.chain_558	3
scaffold_11	retained_exon	3497673	3498441	+	asmbl_5440,asmbl_5441	none	STRG.13484.1,blat.proc3825170.chain_2033	2	STRG.13484.2	1
scaffold_6	spliced_intron	8643223	8643316	+	asmbl_47170,asmbl_47171,asmbl_47172	none	STRG.7754.2,STRG.7754.3,blat.proc3825168.chain_189	3	blat.proc3825168.chain_188	1
scaffold_11	alternate_exon	6140033	6140259	-	asmbl_6699	none	STRG.13679.2,blat.proc3825154.chain_2227	2	STRG.13679.1,blat.proc3825154.chain_2224,blat.proc3825154.chain_2225,blat.proc3825154.chain_2226	4
scaffold_21	alt_acceptor	11992127	11992128	-	asmbl_28147	none	STRG.24651.2	1	STRG.24651.1,Trinity_GG_13782_c0_g1_i1,blat.proc3825160.chain_1848	3
scaffold_7	alternate_exon	15925213	15927840	-	asmbl_51394	none	STRG.9572.2	1	STRG.9572.3	1
scaffold_6	starts_in_intron	9100277	9100277	+	asmbl_47206	none	blat.proc3825168.chain_249	1	STRG.7789.1,STRG.7789.2,STRG.7789.3,blat.proc3825168.chain_248	4
scaffold_18	alt_acceptor	13653835	13653836	-	asmbl_20180,asmbl_20182	none	STRG.21800.1,blat.proc3825158.chain_2602,blat.proc3825158.chain_2603	3	STRG.21800.2	1
scaffold_7	ends_in_intron	13244249	13244249	+	asmbl_50337	none	blat.proc3825168.chain_1980	1	STRG.9439.1,STRG.9439.2	2
scaffold_28	alt_donor	293837	293838	+	asmbl_37267	none	STRG.29263.1,blat.proc3825178.chain_2490	2	STRG.29263.2,blat.proc3825178.chain_2488	2
scaffold_1	ends_in_intron	11412047	11412047	+	asmbl_2101	none	Trinity_GG_17782_c1_g1_i2,blat.proc3825164.chain_896	2	STRG.749.1,Trinity_GG_17782_c1_g1_i1,blat.proc3825164.chain_897	3
scaffold_12	ends_in_intron	9148627	9148627	+	asmbl_7856	none	blat.proc3825170.chain_3448	1	STRG.14923.1,blat.proc3825170.chain_3449,blat.proc3825170.chain_3450	3
scaffold_14	spliced_intron	13217591	13219618	+	asmbl_12457,asmbl_12458	none	STRG.17621.1,STRG.17621.3,blat.proc3825172.chain_2334	3	STRG.17621.2,blat.proc3825172.chain_2346	2
scaffold_22	retained_intron	9540632	9540817	-	asmbl_29544,asmbl_29545	none	STRG.25286.1,blat.proc3825160.chain_2393	2	blat.proc3825160.chain_2394	1
scaffold_11	starts_in_intron	854446	854446	+	asmbl_5309	none	STRG.13285.2,blat.proc3825170.chain_1861	2	STRG.13285.1,Trinity_GG_24628_c0_g1_i5,blat.proc3825170.chain_1859,blat.proc3825170.chain_1860,blat.proc3825170.chain_1863	5
scaffold_11	alt_acceptor	6018972	6018973	+	asmbl_5600,asmbl_5601	none	STRG.13667.1,STRG.13667.2,blat.proc3825170.chain_2208	3	STRG.13667.3,blat.proc3825170.chain_2206	2
scaffold_7	alternate_exon	11864681	11874284	-	asmbl_51174,asmbl_51175	none	STRG.9306.1,STRG.9306.2	2	blat.proc3825152.chain_1680	1
scaffold_17	alternate_exon	12395637	12395679	-	asmbl_18335	none	STRG.20766.2	1	STRG.20766.1	1
scaffold_1	ends_in_intron	6283833	6283833	-	asmbl_334,asmbl_342	none	STRG.423.5,STRG.423.6,Trinity_GG_229_c0_g1_i13,Trinity_GG_229_c0_g1_i9,blat.proc3825148.chain_413,blat.proc3825148.chain_417	6	STRG.423.1,STRG.423.2,STRG.423.3,blat.proc3825148.chain_410,blat.proc3825148.chain_411,blat.proc3825148.chain_412,blat.proc3825148.chain_414,blat.proc3825148.chain_418	8
scaffold_17	alt_donor	3233697	3233698	-	asmbl_17809	none	STRG.20107.2,blat.proc3825158.chain_1151	2	STRG.20107.1,blat.proc3825158.chain_1150	2
scaffold_4	ends_in_intron	294978	294978	-	asmbl_42321	none	Trinity_GG_2299_c0_g1_i4,blat.proc3825150.chain_355	2	Trinity_GG_2299_c0_g1_i1,Trinity_GG_2299_c0_g1_i2,blat.proc3825150.chain_353,blat.proc3825150.chain_354	4
scaffold_8	spliced_intron	14569488	14569706	+	asmbl_53380,asmbl_53383	none	STRG.10543.1,STRG.10543.3,blat.proc3825168.chain_3106	3	blat.proc3825168.chain_3107	1
scaffold_2	alternate_exon	3898063	3898324	+	asmbl_24317,asmbl_24320,asmbl_24321	none	STRG.1826.1,blat.proc3825164.chain_1999,blat.proc3825164.chain_2001,blat.proc3825164.chain_2004	4	STRG.1826.3,blat.proc3825164.chain_2002,blat.proc3825164.chain_2003	3
scaffold_21	alternate_exon	3155826	3169153	+	asmbl_28466,asmbl_28470,asmbl_28472	none	STRG.23959.3,STRG.23959.5,blat.proc3825176.chain_1133	3	STRG.23959.7,blat.proc3825176.chain_1144	2
scaffold_17	alt_acceptor	2553386	2553387	-	asmbl_17763	none	STRG.20051.1,blat.proc3825158.chain_1015	2	blat.proc3825158.chain_1014	1
scaffold_2	spliced_intron	16403504	16403585	+	asmbl_25137	none	STRG.2582.1,blat.proc3825164.chain_2872	2	blat.proc3825164.chain_2870	1
scaffold_8	alternate_exon	8172234	8172683	+	asmbl_53005	none	STRG.10103.1,blat.proc3825168.chain_2701	2	STRG.10103.3	1
scaffold_11	skipped_exon	6504654	6505440	+	asmbl_5630	none	STRG.13690.2	1	STRG.13690.1,Trinity_GG_24853_c0_g1_i2,blat.proc3825170.chain_2228	3
scaffold_10	spliced_intron	6077386	6078828	-	asmbl_4431	none	STRG.12445.1	1	STRG.12445.2,STRG.12445.3,Trinity_GG_6960_c0_g2_i1,blat.proc3825154.chain_1033,blat.proc3825154.chain_1035	5
scaffold_2	starts_in_intron	6901183	6901183	+	asmbl_24506	none	Trinity_GG_18453_c5_g1_i1,blat.proc3825164.chain_2166	2	STRG.2036.1,STRG.2036.2,STRG.2036.3,STRG.2036.4,Trinity_GG_18453_c0_g1_i8,blat.proc3825164.chain_2155,blat.proc3825164.chain_2156,blat.proc3825164.chain_2158,blat.proc3825164.chain_2159,blat.proc3825164.chain_2160	10
scaffold_15	skipped_exon	6957099	6957426	-	asmbl_14272	none	STRG.18300.2,blat.proc3825156.chain_3147	2	STRG.18300.1,blat.proc3825156.chain_3145,blat.proc3825156.chain_3146	3
scaffold_7	spliced_intron	129533	129658	-	asmbl_50666	none	STRG.8595.5	1	STRG.8595.2	1
scaffold_8	retained_intron	9122376	9122775	-	asmbl_52005	none	Trinity_GG_5679_c1_g1_i1,blat.proc3825152.chain_2444	2	STRG.10168.1,STRG.10168.2,blat.proc3825152.chain_2442,blat.proc3825152.chain_2443	4
scaffold_11	spliced_intron	3901228	3901407	+	asmbl_5468	none	STRG.13510.2	1	STRG.13510.1	1
scaffold_11	spliced_intron	1983670	1984066	-	asmbl_6464,asmbl_6465	none	STRG.13360.1,blat.proc3825154.chain_1941	2	Trinity_GG_7490_c0_g1_i5,blat.proc3825154.chain_1943,blat.proc3825154.chain_1944	3
scaffold_8	retained_intron	12728267	12728451	-	asmbl_52224	none	blat.proc3825152.chain_2671	1	STRG.10451.1,STRG.10451.2,blat.proc3825152.chain_2672	3
scaffold_23	retained_intron	6291131	6291893	-	asmbl_30967,asmbl_30969,asmbl_30970,asmbl_30972	none	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190,blat.proc3825160.chain_3193	9	STRG.25975.1,STRG.25975.3,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192	7
scaffold_7	alt_acceptor	16131737	16131738	-	asmbl_51402	none	STRG.9574.1,Trinity_GG_5375_c0_g1_i2,blat.proc3825152.chain_1920	3	STRG.9574.2,Trinity_GG_5375_c0_g1_i1,blat.proc3825152.chain_1919	3
scaffold_7	starts_in_intron	13220858	13220858	+	asmbl_50328,asmbl_50329,asmbl_50332	none	STRG.9435.3,Trinity_GG_22553_c0_g1_i1,Trinity_GG_22553_c0_g1_i2,blat.proc3825168.chain_1955,blat.proc3825168.chain_1956	5	STRG.9435.1,STRG.9435.2,Trinity_GG_22553_c0_g1_i4,blat.proc3825168.chain_1954	4
scaffold_14	alt_acceptor	6699564	6699565	+	asmbl_12101	none	STRG.17116.1,blat.proc3825172.chain_1896	2	STRG.17116.2	1
scaffold_2	retained_exon	13394140	13394233	-	asmbl_23511	none	STRG.2358.1,Trinity_GG_1308_c0_g1_i1,blat.proc3825148.chain_2346	3	STRG.2358.2	1
scaffold_14	skipped_exon	404659	405204	+	asmbl_11750,asmbl_11753,asmbl_11756	none	STRG.16734.3,STRG.16734.4,blat.proc3825172.chain_1508,blat.proc3825172.chain_1515	4	STRG.16734.2,STRG.16734.5,STRG.16734.6,Trinity_GG_26526_c0_g1_i24,Trinity_GG_26526_c0_g1_i6,blat.proc3825172.chain_1502,blat.proc3825172.chain_1506,blat.proc3825172.chain_1513,blat.proc3825172.chain_1516	9
scaffold_21	retained_exon	5280676	5280791	-	asmbl_27644	none	STRG.24066.1,blat.proc3825160.chain_1166	2	STRG.24066.3,STRG.24066.4,blat.proc3825160.chain_1167	3
scaffold_4	retained_intron	306262	306547	-	asmbl_42324	none	STRG.4129.2,Trinity_GG_2302_c0_g2_i1,blat.proc3825150.chain_364	3	STRG.4129.3,Trinity_GG_2302_c0_g1_i1,blat.proc3825150.chain_362	3
scaffold_22	ends_in_intron	6128124	6128124	+	asmbl_30107	none	Trinity_GG_31147_c1_g1_i1,blat.proc3825176.chain_2130	2	STRG.24968.1,STRG.24968.4,Trinity_GG_31147_c1_g1_i7,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2125,blat.proc3825176.chain_2128,blat.proc3825176.chain_2129,blat.proc3825176.chain_2132	8
scaffold_20	ends_in_intron	10174752	10174752	-	asmbl_26090	none	STRG.23571.2,Trinity_GG_13131_c1_g1_i1,blat.proc3825160.chain_623	3	STRG.23571.1,blat.proc3825160.chain_620	2
scaffold_1	retained_intron	14189912	14190481	-	asmbl_868	none	Trinity_GG_515_c0_g2_i1,blat.proc3825148.chain_974	2	STRG.1005.1,blat.proc3825148.chain_968,blat.proc3825148.chain_969,blat.proc3825148.chain_971	4
scaffold_1	alternate_exon	19041067	19042447	+	asmbl_2578	none	Trinity_GG_18101_c0_g1_i2,blat.proc3825164.chain_1480	2	STRG.1335.7	1
scaffold_8	retained_intron	16499327	16499685	-	asmbl_52411,asmbl_52413,asmbl_52418,asmbl_52422	none	STRG.10629.1,STRG.10629.2,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2939	5	STRG.10629.3,STRG.10629.4,blat.proc3825152.chain_2928,blat.proc3825152.chain_2932,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2941	7
scaffold_17	alt_donor	1290650	1290651	-	asmbl_17685	none	STRG.19964.2	1	STRG.19964.3	1
scaffold_5	retained_intron	10853360	10853477	+	asmbl_45703	none	blat.proc3825166.chain_2523	1	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	4
scaffold_12	retained_intron	6526646	6526749	-	asmbl_8542	none	blat.proc3825154.chain_3259	1	STRG.14748.1,STRG.14748.2,blat.proc3825154.chain_3260	3
scaffold_15	alternate_exon	15847666	15849094	+	asmbl_15828,asmbl_15829	none	blat.proc3825172.chain_3575,blat.proc3825172.chain_3577	2	STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3568,blat.proc3825172.chain_3570,blat.proc3825172.chain_3574	8
scaffold_11	retained_intron	8099585	8099683	+	asmbl_5725	none	Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342	2	STRG.13822.1,STRG.13822.2,STRG.13822.3,STRG.13822.4,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i2,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2345,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	14
scaffold_13	alt_donor	16138073	16138074	+	asmbl_11555	none	STRG.16653.1,Trinity_GG_26492_c0_g1_i1	2	STRG.16653.2	1
scaffold_16	ends_in_intron	9458260	9458260	+	asmbl_16487	none	blat.proc3825174.chain_460	1	STRG.19548.1,blat.proc3825174.chain_459	2
scaffold_7	spliced_intron	12649718	12649839	-	asmbl_51259,asmbl_51261,asmbl_51262	none	STRG.9385.1,STRG.9385.2,STRG.9385.3,blat.proc3825152.chain_1733	4	blat.proc3825152.chain_1732	1
scaffold_1999	alternate_exon	81	110	+	asmbl_22774,asmbl_22776	none	STRG.30689.2,blat.proc3825178.chain_3643,blat.proc3825178.chain_3644	3	STRG.30689.1,blat.proc3825158.chain_3627	2
scaffold_18	skipped_exon	1895347	1897477	-	asmbl_19659,asmbl_19664	none	STRG.21081.6,STRG.21081.7	2	blat.proc3825158.chain_2011,blat.proc3825158.chain_2017	2
scaffold_20	alternate_exon	6975539	6975819	+	asmbl_26687,asmbl_26690	none	STRG.23262.2,blat.proc3825176.chain_445,blat.proc3825176.chain_446	3	STRG.23262.3	1
scaffold_13	alternate_exon	8355742	8355997	+	asmbl_11127	none	Trinity_GG_26184_c0_g1_i5,blat.proc3825172.chain_918	2	STRG.16130.4	1
scaffold_13	retained_intron	6623425	6623614	+	asmbl_10958	none	Trinity_GG_26066_c0_g1_i1,blat.proc3825172.chain_684	2	Trinity_GG_26066_c0_g1_i2,Trinity_GG_26066_c0_g1_i3,blat.proc3825172.chain_685,blat.proc3825172.chain_687	4
scaffold_25	retained_intron	4319009	4319168	+	asmbl_33486,asmbl_33487,asmbl_33488	none	STRG.27360.2,STRG.27360.3,Trinity_GG_32398_c0_g1_i1,Trinity_GG_32398_c0_g1_i2,blat.proc3825178.chain_466,blat.proc3825178.chain_467,blat.proc3825178.chain_468	7	STRG.27360.1,blat.proc3825178.chain_469	2
scaffold_12	retained_intron	12308782	12309134	+	asmbl_7983	none	STRG.15133.3,Trinity_GG_25650_c0_g1_i1,blat.proc3825170.chain_3642	3	STRG.15133.1,STRG.15133.2,STRG.15133.5,blat.proc3825170.chain_3640	4
scaffold_4	starts_in_intron	9996705	9996705	+	asmbl_41641	none	blat.proc3825166.chain_1184	1	STRG.4766.1,STRG.4766.2,STRG.4766.4,Trinity_GG_19950_c0_g1_i1,blat.proc3825166.chain_1185,blat.proc3825166.chain_1186,blat.proc3825166.chain_1187,blat.proc3825166.chain_1188	8
scaffold_10	spliced_intron	13458240	13458388	-	asmbl_4882	none	STRG.12936.3	1	STRG.12936.2,blat.proc3825154.chain_1527	2
scaffold_3	retained_intron	935338	935527	-	asmbl_38684	none	blat.proc3825148.chain_2837	1	blat.proc3825148.chain_2836,blat.proc3825148.chain_2838	2
scaffold_10	spliced_intron	6867580	6867786	-	asmbl_4506,asmbl_4509,asmbl_4512	none	STRG.12511.1,blat.proc3825154.chain_1142,blat.proc3825154.chain_1144,blat.proc3825154.chain_1147	4	blat.proc3825154.chain_1139	1
scaffold_21	spliced_intron	1151006	1151179	+	asmbl_28330	none	STRG.23790.3	1	STRG.23790.1,blat.proc3825176.chain_1009	2
scaffold_5	alternate_exon	1097301	1099215	-	asmbl_43821	none	STRG.5661.1	1	blat.proc3825150.chain_1910	1
scaffold_10	alternate_exon	4342605	4342639	-	asmbl_4289	none	STRG.12277.1	1	STRG.12277.2,blat.proc3825154.chain_838	2
scaffold_2	alternate_exon	18647510	18647756	-	asmbl_23812	none	STRG.2741.2	1	STRG.2741.1,blat.proc3825148.chain_2694	2
scaffold_26	alternate_exon	434067	435136	+	asmbl_34686	none	blat.proc3825178.chain_956	1	blat.proc3825178.chain_953	1
scaffold_2	alt_acceptor	20319591	20319592	+	asmbl_25324,asmbl_25325	none	STRG.2877.5,blat.proc3825164.chain_3104,blat.proc3825164.chain_3105	3	STRG.2877.4	1
scaffold_27	alt_acceptor	9965583	9965584	+	asmbl_36552,asmbl_36553	none	STRG.29227.1,STRG.29227.2,blat.proc3825178.chain_2435,blat.proc3825178.chain_2436	4	STRG.29227.3	1
scaffold_10	alternate_exon	4575599	4575866	-	asmbl_4304	none	STRG.12293.1	1	blat.proc3825154.chain_851	1
scaffold_14	retained_exon	11664104	11664175	-	asmbl_13514	none	blat.proc3825156.chain_2310	1	STRG.17511.1,STRG.17511.2,blat.proc3825156.chain_2307,blat.proc3825156.chain_2308,blat.proc3825156.chain_2309	5
scaffold_10	spliced_intron	13471231	13471345	-	asmbl_4885,asmbl_4886,asmbl_4889,asmbl_4890	none	STRG.12943.2,STRG.12943.3,STRG.12943.4,blat.proc3825154.chain_1532,blat.proc3825154.chain_1534	5	STRG.12943.1,Trinity_GG_7233_c0_g2_i3,blat.proc3825154.chain_1533,blat.proc3825154.chain_1535	4
scaffold_11	starts_in_intron	10177106	10177106	+	asmbl_5927	none	blat.proc3825170.chain_2576	1	STRG.14030.1,blat.proc3825170.chain_2577	2
scaffold_4	alternate_exon	16576852	16577618	+	asmbl_41977,asmbl_41980	none	STRG.5236.2,blat.proc3825166.chain_1570	2	STRG.5236.1,blat.proc3825166.chain_1573	2
scaffold_28	ends_in_intron	7745088	7745088	-	asmbl_38409	none	blat.proc3825162.chain_3010	1	STRG.29848.1,STRG.29848.2,blat.proc3825162.chain_3009	3
scaffold_2	skipped_exon	14014078	14014694	-	asmbl_23555	none	STRG.2395.2,Trinity_GG_1332_c0_g1_i2,blat.proc3825148.chain_2399	3	STRG.2395.1,Trinity_GG_1332_c0_g1_i1,blat.proc3825148.chain_2398	3
scaffold_2	spliced_intron	4578467	4578717	+	asmbl_24366	none	STRG.1886.3	1	STRG.1886.1,Trinity_GG_18341_c1_g1_i3,blat.proc3825164.chain_1978	3
scaffold_7	starts_in_intron	717913	717913	-	asmbl_50694	none	Trinity_GG_4928_c0_g1_i4,blat.proc3825152.chain_1091	2	STRG.8610.1,blat.proc3825152.chain_1090,blat.proc3825152.chain_1092	3
scaffold_18	alt_acceptor	7629659	7629660	-	asmbl_19962,asmbl_19967	none	STRG.21463.4,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2396	3	STRG.21463.2,STRG.21463.3,blat.proc3825158.chain_2391,blat.proc3825158.chain_2392,blat.proc3825158.chain_2393	5
scaffold_18	alt_donor	4074385	4074386	+	asmbl_20492,asmbl_20494	none	STRG.21207.1,STRG.21207.2	2	STRG.21207.3,STRG.21207.4	2
scaffold_1	retained_intron	22129065	22129294	+	asmbl_2680	none	STRG.1477.1	1	STRG.1477.2	1
scaffold_10	ends_in_intron	11967805	11967805	+	asmbl_3517	none	blat.proc3825170.chain_1452	1	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.4,STRG.12838.5,STRG.12838.6,Trinity_GG_24389_c0_g1_i10,Trinity_GG_24389_c0_g1_i5,blat.proc3825170.chain_1447,blat.proc3825170.chain_1449	10
scaffold_21	alt_donor	3125160	3125161	-	asmbl_27519	none	STRG.23943.1	1	blat.proc3825160.chain_1059	1
scaffold_12	alt_acceptor	15678894	15678895	-	asmbl_9092,asmbl_9093	none	STRG.15358.1,STRG.15358.4,blat.proc3825156.chain_212,blat.proc3825156.chain_213	4	STRG.15358.2,STRG.15358.3	2
scaffold_22	retained_exon	10683112	10683558	-	asmbl_29615,asmbl_29616,asmbl_29618	none	STRG.25415.1,STRG.25415.2,STRG.25415.3	3	blat.proc3825160.chain_2610	1
scaffold_10	retained_intron	9043353	9045014	-	asmbl_4659	none	STRG.12654.2,Trinity_GG_7062_c0_g1_i4,blat.proc3825154.chain_1239	3	STRG.12654.1,blat.proc3825154.chain_1241,blat.proc3825154.chain_1242,blat.proc3825154.chain_1243	4
scaffold_6	alternate_exon	6468769	6468843	-	asmbl_48455	none	STRG.7568.1	1	STRG.7568.2,Trinity_GG_4285_c0_g1_i1,blat.proc3825150.chain_3745	3
scaffold_16	ends_in_intron	3570014	3570014	-	asmbl_16989	none	Trinity_GG_10767_c0_g1_i4,blat.proc3825158.chain_304	2	STRG.19175.1,STRG.19175.2,STRG.19175.3,Trinity_GG_10767_c0_g1_i5,Trinity_GG_10767_c0_g1_i8,blat.proc3825158.chain_305,blat.proc3825158.chain_306	7
scaffold_22	spliced_intron	8102654	8102969	-	asmbl_29450	none	STRG.25166.1	1	blat.proc3825160.chain_2280	1
scaffold_3	spliced_intron	12774687	12774814	+	asmbl_40415,asmbl_40416	none	STRG.3668.1,STRG.3668.2	2	STRG.3668.3,Trinity_GG_19373_c0_g1_i1,blat.proc3825166.chain_172	3
scaffold_16	alternate_exon	3869031	3869471	-	asmbl_17009	none	STRG.19196.3	1	STRG.19196.1,STRG.19196.2,blat.proc3825158.chain_332,blat.proc3825158.chain_333	4
scaffold_25	alt_acceptor	6311974	6311975	-	asmbl_34349	none	STRG.27516.2,blat.proc3825162.chain_906	2	STRG.27516.1	1
scaffold_15	alternate_exon	9985944	9985998	+	asmbl_15436	none	STRG.18511.2,Trinity_GG_27463_c1_g1_i1,blat.proc3825172.chain_3173	3	STRG.18511.1,Trinity_GG_27463_c1_g1_i2,blat.proc3825172.chain_3174	3
scaffold_23	skipped_exon	5858438	5860167	+	asmbl_31604	none	STRG.25970.2,Trinity_GG_31603_c0_g1_i2,blat.proc3825176.chain_2843	3	blat.proc3825176.chain_2844	1
scaffold_11	alternate_exon	34838	35870	-	asmbl_6367,asmbl_6368	none	STRG.13237.2,blat.proc3825154.chain_1816	2	STRG.13237.1,blat.proc3825154.chain_1815	2
scaffold_25	starts_in_intron	1438023	1438023	-	asmbl_34036	none	blat.proc3825162.chain_548	1	STRG.27179.1,Trinity_GG_15230_c0_g1_i2,blat.proc3825162.chain_547	3
scaffold_2	retained_exon	3758310	3758515	-	asmbl_22995	none	STRG.1808.1,blat.proc3825148.chain_1746	2	blat.proc3825148.chain_1747	1
scaffold_17	spliced_intron	1304001	1304135	-	asmbl_17693,asmbl_17694,asmbl_17697,asmbl_17698	none	STRG.19975.1,STRG.19975.2,blat.proc3825158.chain_1029,blat.proc3825158.chain_1030,blat.proc3825158.chain_1032,blat.proc3825158.chain_1034	6	blat.proc3825158.chain_1031,blat.proc3825158.chain_1035	2
scaffold_2	ends_in_intron	4582367	4582367	+	asmbl_24362	none	blat.proc3825164.chain_1982	1	STRG.1886.1,STRG.1886.2,STRG.1886.3,blat.proc3825164.chain_1975	4
scaffold_7	starts_in_intron	13548287	13548287	+	asmbl_50360	none	Trinity_GG_22575_c1_g1_i1,blat.proc3825168.chain_1997	2	STRG.9464.1,blat.proc3825168.chain_1994,blat.proc3825168.chain_1995,blat.proc3825168.chain_1996	4
scaffold_27	ends_in_intron	2958061	2958061	+	asmbl_36148	none	blat.proc3825178.chain_1930	1	STRG.28779.2,blat.proc3825178.chain_1931	2
scaffold_17	alternate_exon	1305119	1305195	+	asmbl_18601	none	STRG.19968.2	1	STRG.19968.1,blat.proc3825174.chain_858	2
scaffold_11	alternate_exon	9149690	9149768	+	asmbl_5875	none	STRG.13954.3	1	STRG.13954.1,blat.proc3825170.chain_2540	2
scaffold_2	alt_donor	8855721	8855722	+	asmbl_24645	none	STRG.2137.2,Trinity_GG_18519_c0_g1_i2,blat.proc3825164.chain_2323	3	STRG.2137.1,Trinity_GG_18519_c0_g1_i1,blat.proc3825164.chain_2322	3
scaffold_6	spliced_intron	13178612	13178919	-	asmbl_48894	none	STRG.8076.1,blat.proc3825152.chain_483	2	STRG.8076.2,Trinity_GG_4593_c0_g1_i2,blat.proc3825152.chain_484	3
scaffold_7	spliced_intron	5265960	5265992	-	asmbl_50878	none	STRG.8865.2	1	STRG.8865.1,blat.proc3825152.chain_1316	2
scaffold_13	starts_in_intron	903690	903690	-	asmbl_9375	none	blat.proc3825156.chain_270	1	blat.proc3825156.chain_264	1
scaffold_1	alt_acceptor	8606076	8606077	-	asmbl_455	none	STRG.565.1,Trinity_GG_289_c0_g1_i1,blat.proc3825148.chain_525	3	STRG.565.2	1
scaffold_27	alternate_exon	4798127	4798264	-	asmbl_36968	none	STRG.28912.1,blat.proc3825162.chain_2144	2	STRG.28912.2,blat.proc3825162.chain_2143	2
scaffold_21	retained_intron	1054388	1054575	-	asmbl_27378	none	Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_926	2	STRG.23787.1,STRG.23787.4,Trinity_GG_13262_c0_g1_i1,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922,blat.proc3825160.chain_925	6
scaffold_15	alt_donor	12601908	12601909	+	asmbl_15584	none	STRG.18714.2,blat.proc3825172.chain_3359	2	STRG.18714.1,blat.proc3825172.chain_3357	2
scaffold_5	alt_acceptor	13316127	13316128	-	asmbl_44537,asmbl_44539	none	STRG.6579.1,blat.proc3825150.chain_2763	2	blat.proc3825150.chain_2766	1
scaffold_15	alt_donor	15870636	15870637	+	asmbl_15835,asmbl_15836	none	STRG.18969.1,STRG.18969.3	2	STRG.18969.2,blat.proc3825172.chain_3546	2
scaffold_3	starts_in_intron	17416993	17416993	+	asmbl_40678	none	Trinity_GG_19518_c0_g1_i2	1	STRG.3977.1,blat.proc3825166.chain_433	2
scaffold_8	spliced_intron	17284211	17284287	-	asmbl_52438	none	STRG.10651.1,blat.proc3825152.chain_2859	2	blat.proc3825152.chain_2857	1
scaffold_15	alternate_exon	11399940	11401714	-	asmbl_14499	none	blat.proc3825156.chain_3364	1	STRG.18606.4,STRG.18606.6	2
scaffold_23	retained_intron	10910316	10910432	-	asmbl_31170	none	STRG.26293.2	1	STRG.26293.1,STRG.26293.3	2
scaffold_19	retained_exon	9454023	9454055	+	asmbl_21594	none	STRG.22377.1,blat.proc3825174.chain_3388	2	STRG.22377.2,blat.proc3825174.chain_3390	2
scaffold_7	starts_in_intron	6903824	6903824	+	asmbl_49880	none	Trinity_GG_22220_c0_g1_i2,blat.proc3825168.chain_1395	2	STRG.8952.1,Trinity_GG_22220_c0_g1_i3,blat.proc3825168.chain_1396	3
scaffold_3	starts_in_intron	7287380	7287380	-	asmbl_38964	none	blat.proc3825148.chain_3217	1	STRG.3330.1,STRG.3330.2,STRG.3330.3,blat.proc3825148.chain_3215,blat.proc3825148.chain_3216	5
scaffold_25	starts_in_intron	8424793	8424793	+	asmbl_33734	none	Trinity_GG_32568_c0_g1_i2,blat.proc3825178.chain_749	2	STRG.27674.1,blat.proc3825178.chain_747	2
scaffold_23	ends_in_intron	8206592	8206592	+	asmbl_31764	none	blat.proc3825176.chain_3007	1	STRG.26129.1,blat.proc3825176.chain_3002,blat.proc3825176.chain_3004	3
scaffold_2	alternate_exon	14203308	14203356	-	asmbl_23575	none	STRG.2414.4	1	STRG.2414.1,STRG.2414.3,blat.proc3825148.chain_2404,blat.proc3825148.chain_2405,blat.proc3825148.chain_2407	5
scaffold_12	alt_acceptor	4951562	4951563	-	asmbl_8467,asmbl_8469	none	STRG.14666.1,blat.proc3825154.chain_3103,blat.proc3825154.chain_3104	3	STRG.14666.2,blat.proc3825154.chain_3102	2
scaffold_21	spliced_intron	7009179	7009301	-	asmbl_27772,asmbl_27773,asmbl_27774,asmbl_27775,asmbl_27777,asmbl_27778	none	STRG.24233.1,STRG.24233.2,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393,blat.proc3825160.chain_1395	7	blat.proc3825160.chain_1394	1
scaffold_8	starts_in_intron	11741739	11741739	+	asmbl_53257	none	blat.proc3825168.chain_2885	1	blat.proc3825168.chain_2883,blat.proc3825168.chain_2884	2
scaffold_26	alt_donor	9918618	9918619	-	asmbl_35798,asmbl_35800,asmbl_35801	none	STRG.28525.1,STRG.28525.2,Trinity_GG_15896_c0_g1_i4,blat.proc3825162.chain_1640,blat.proc3825162.chain_1641	5	STRG.28525.3	1
scaffold_7	alt_acceptor	2149924	2149925	+	asmbl_49626	none	STRG.8661.2,Trinity_GG_22074_c0_g1_i1	2	STRG.8661.1,Trinity_GG_22074_c0_g1_i2	2
scaffold_5	spliced_intron	6734217	6734431	+	asmbl_45448	none	STRG.6078.2,blat.proc3825166.chain_2282	2	STRG.6078.1,STRG.6078.3,blat.proc3825166.chain_2281	3
scaffold_10	skipped_exon	17094808	17095396	-	asmbl_5033	none	blat.proc3825154.chain_1700	1	STRG.13151.1,blat.proc3825154.chain_1699,blat.proc3825154.chain_1701	3
scaffold_22	alt_donor	4411948	4411949	-	asmbl_29259	none	STRG.24860.1	1	STRG.24860.2,STRG.24860.3	2
scaffold_1	alt_donor	13100301	13100302	-	asmbl_791	none	STRG.947.1,blat.proc3825148.chain_865	2	STRG.947.2,blat.proc3825148.chain_866	2
scaffold_14	alt_acceptor	5951209	5951210	+	asmbl_12043	none	STRG.17068.1,blat.proc3825172.chain_1819	2	STRG.17068.2	1
scaffold_3	alt_acceptor	3085019	3085020	+	asmbl_39932	none	STRG.3055.2	1	STRG.3055.1	1
scaffold_6	alt_acceptor	13201030	13201031	+	asmbl_47490	none	blat.proc3825168.chain_594	1	STRG.8079.1,blat.proc3825168.chain_593	2
scaffold_9	ends_in_intron	4292241	4292241	-	asmbl_54966	none	Trinity_GG_6124_c0_g1_i1,blat.proc3825152.chain_3287	2	STRG.11029.1	1
scaffold_15	alt_donor	489741	489742	+	asmbl_14980	none	STRG.17911.1	1	STRG.17911.2,Trinity_GG_27157_c0_g1_i2,blat.proc3825172.chain_2642	3
scaffold_2	retained_exon	2879362	2879391	-	asmbl_22930,asmbl_22938,asmbl_22940,asmbl_22943	none	STRG.1736.3,blat.proc3825148.chain_1667,blat.proc3825148.chain_1670,blat.proc3825148.chain_1671,blat.proc3825148.chain_1674	5	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1668,blat.proc3825148.chain_1672,blat.proc3825148.chain_1673	5
scaffold_5	ends_in_intron	15043418	15043418	-	asmbl_44642	none	blat.proc3825150.chain_2830	1	STRG.6698.2,STRG.6698.3,STRG.6698.4,STRG.6698.5,STRG.6698.6,blat.proc3825150.chain_2828,blat.proc3825150.chain_2829,blat.proc3825150.chain_2831,blat.proc3825150.chain_2832	9
scaffold_1	alternate_exon	1450860	1450925	-	asmbl_73	none	STRG.89.2	1	STRG.89.1,blat.proc3825148.chain_6	2
scaffold_1	starts_in_intron	6220271	6220271	-	asmbl_327	none	blat.proc3825148.chain_374	1	STRG.418.1,blat.proc3825148.chain_375	2
scaffold_13	spliced_intron	6398067	6398296	+	asmbl_10923,asmbl_10924,asmbl_10925,asmbl_10926,asmbl_10927,asmbl_10928,asmbl_10929,asmbl_10930	none	STRG.15929.1,STRG.15929.2,STRG.15929.3,STRG.15929.4,STRG.15929.5,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i2,Trinity_GG_26055_c0_g1_i3,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_653,blat.proc3825172.chain_654,blat.proc3825172.chain_655,blat.proc3825172.chain_656	15	blat.proc3825172.chain_657	1
scaffold_20	ends_in_intron	8003361	8003361	-	asmbl_25951	none	Trinity_GG_13017_c0_g1_i1,blat.proc3825160.chain_427	2	STRG.23349.2	1
scaffold_14	starts_in_intron	11568709	11568709	-	asmbl_13494	none	blat.proc3825156.chain_2244	1	STRG.17494.1,STRG.17494.2,blat.proc3825156.chain_2243	3
scaffold_14	retained_intron	12751805	12752771	-	asmbl_13597,asmbl_13602	none	STRG.17591.3,blat.proc3825156.chain_2474	2	STRG.17591.1,STRG.17591.2,blat.proc3825156.chain_2476,blat.proc3825156.chain_2477	4
scaffold_15	spliced_intron	15857572	15857984	+	asmbl_15819,asmbl_15821,asmbl_15822,asmbl_15823,asmbl_15825,asmbl_15828,asmbl_15829	none	STRG.18973.1,STRG.18973.2,STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i5,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3568,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575,blat.proc3825172.chain_3576,blat.proc3825172.chain_3577	15	Trinity_GG_27688_c0_g1_i10,blat.proc3825172.chain_3573,blat.proc3825172.chain_3578	3
scaffold_15	starts_in_intron	4156412	4156412	-	asmbl_14135	none	blat.proc3825156.chain_3011	1	STRG.18162.1,Trinity_GG_10219_c0_g1_i2,blat.proc3825156.chain_3009	3
scaffold_26	alt_donor	6385952	6385953	+	asmbl_35081	none	blat.proc3825178.chain_1409	1	STRG.28336.1,blat.proc3825178.chain_1410	2
scaffold_13	alt_donor	3746360	3746361	+	asmbl_10741,asmbl_10743	none	STRG.15702.2,Trinity_GG_25936_c0_g1_i1,blat.proc3825172.chain_434	3	STRG.15702.1,Trinity_GG_25936_c0_g1_i4,blat.proc3825172.chain_435	3
scaffold_1	alternate_exon	853703	854039	+	asmbl_1427	none	Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142	2	STRG.43.1,STRG.43.2,STRG.43.3,STRG.43.4	4
scaffold_19	alternate_exon	1660976	1661009	-	asmbl_22041	none	STRG.21926.2	1	STRG.21926.1,blat.proc3825158.chain_2768,blat.proc3825158.chain_2769	3
scaffold_14	alt_donor	15565628	15565629	+	asmbl_12624	none	STRG.17796.1	1	blat.proc3825172.chain_2534	1
scaffold_8	starts_in_intron	8795086	8795086	-	asmbl_51973	none	blat.proc3825152.chain_2402	1	STRG.10137.1,blat.proc3825152.chain_2401,blat.proc3825152.chain_2403	3
scaffold_2	alt_acceptor	29975	29976	+	asmbl_24062	none	Trinity_GG_18174_c0_g1_i1,blat.proc3825164.chain_1644	2	STRG.1496.1,STRG.1496.3,Trinity_GG_18174_c0_g1_i10,Trinity_GG_18174_c0_g1_i4,blat.proc3825164.chain_1639,blat.proc3825164.chain_1641,blat.proc3825164.chain_1643,blat.proc3825164.chain_1645	8
scaffold_27	ends_in_intron	1986408	1986408	+	asmbl_36060	none	blat.proc3825178.chain_1805	1	STRG.28684.1,STRG.28684.2	2
scaffold_5	alternate_exon	9150064	9150134	+	asmbl_45615	none	STRG.6253.2,blat.proc3825166.chain_2409	2	STRG.6253.1,blat.proc3825166.chain_2408	2
scaffold_20	skipped_exon	7195568	7196573	+	asmbl_26706	none	STRG.23289.2,blat.proc3825176.chain_409,blat.proc3825176.chain_410	3	STRG.23289.1	1
scaffold_340	alt_donor	4207	4208	+	asmbl_41018	none	STRG.30296.1	1	Trinity_GG_34082_c0_g1_i1,blat.proc3825178.chain_3388	2
scaffold_12	alternate_exon	10527192	10527416	-	asmbl_8759	none	STRG.15018.2,blat.proc3825154.chain_3540	2	STRG.15018.1,Trinity_GG_8388_c0_g1_i2,blat.proc3825154.chain_3541	3
scaffold_17	spliced_intron	9854049	9854615	-	asmbl_18209	none	STRG.20605.2,Trinity_GG_11588_c0_g1_i2,blat.proc3825158.chain_1626	3	STRG.20605.1,Trinity_GG_11588_c0_g1_i1,blat.proc3825158.chain_1627	3
scaffold_13	alternate_exon	4591889	4591932	+	asmbl_10818	none	STRG.15788.2	1	STRG.15788.1	1
scaffold_10	retained_intron	378745	378845	-	asmbl_3945,asmbl_3946	none	STRG.11922.2,STRG.11922.3,Trinity_GG_6631_c0_g1_i7,blat.proc3825154.chain_458	4	STRG.11922.1,blat.proc3825154.chain_461	2
scaffold_21	spliced_intron	8129161	8129599	-	asmbl_27893,asmbl_27894	none	blat.proc3825160.chain_1510,blat.proc3825160.chain_1511	2	STRG.24349.1,Trinity_GG_13590_c0_g1_i7,blat.proc3825160.chain_1513	3
scaffold_1	alt_acceptor	19359565	19359566	+	asmbl_2590	none	STRG.1351.1,Trinity_GG_18099_c0_g1_i1,blat.proc3825164.chain_1470	3	STRG.1351.2	1
scaffold_9	spliced_intron	13640033	13640444	+	asmbl_54511	none	STRG.11651.2,blat.proc3825170.chain_445	2	STRG.11651.1,Trinity_GG_23805_c0_g1_i3,Trinity_GG_23805_c1_g1_i2,blat.proc3825170.chain_444,blat.proc3825170.chain_447	5
scaffold_23	spliced_intron	10897406	10897606	+	asmbl_31891	none	STRG.26291.1,blat.proc3825176.chain_3258	2	blat.proc3825176.chain_3257	1
scaffold_12	alt_donor	9680914	9680915	-	asmbl_8688	none	STRG.14943.2	1	STRG.14943.1,blat.proc3825154.chain_3469	2
scaffold_22	skipped_exon	6217249	6218993	-	asmbl_29324	none	STRG.24984.3	1	STRG.24984.1,STRG.24984.4	2
scaffold_5	alt_donor	16793296	16793297	-	asmbl_44780	none	STRG.6867.3	1	STRG.6867.2,blat.proc3825150.chain_2980	2
scaffold_2	starts_in_intron	14278101	14278101	+	asmbl_24902	none	blat.proc3825164.chain_2593	1	STRG.2428.1,STRG.2428.2,STRG.2428.3,STRG.2428.4,blat.proc3825164.chain_2592,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596	8
scaffold_6	alternate_exon	12115545	12117099	+	asmbl_47375	none	STRG.7985.2,blat.proc3825168.chain_430	2	Trinity_GG_21681_c0_g1_i3,blat.proc3825168.chain_428	2
scaffold_8	ends_in_intron	6114834	6114834	+	asmbl_52944	none	blat.proc3825168.chain_2543	1	STRG.10015.1,STRG.10015.2,Trinity_GG_22863_c0_g1_i1,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2540,blat.proc3825168.chain_2541	6
scaffold_23	ends_in_intron	2164318	2164318	-	asmbl_30702	none	blat.proc3825160.chain_2856	1	STRG.25690.2	1
scaffold_11	spliced_intron	11999468	11999662	-	asmbl_7057,asmbl_7061	none	STRG.14126.1,STRG.14126.4,Trinity_GG_7897_c0_g1_i4,blat.proc3825154.chain_2671	4	STRG.14126.2,Trinity_GG_7897_c0_g1_i2,blat.proc3825154.chain_2672	3
scaffold_12	alternate_exon	4787046	4788187	-	asmbl_8453	none	blat.proc3825154.chain_3148	1	STRG.14660.1,STRG.14660.2,blat.proc3825154.chain_3145,blat.proc3825154.chain_3150,blat.proc3825154.chain_3151,blat.proc3825154.chain_3152	6
scaffold_18	spliced_intron	9787711	9788236	-	asmbl_20087	none	STRG.21584.2	1	Trinity_GG_12062_c0_g1_i2,blat.proc3825158.chain_2495,blat.proc3825158.chain_2496	3
scaffold_2	ends_in_intron	7891702	7891702	+	asmbl_24594	none	Trinity_GG_18472_c0_g1_i13,blat.proc3825164.chain_2204	2	STRG.2085.1,STRG.2085.2,STRG.2085.3,Trinity_GG_18472_c0_g1_i3,blat.proc3825164.chain_2201,blat.proc3825164.chain_2202,blat.proc3825164.chain_2205,blat.proc3825164.chain_2208,blat.proc3825164.chain_2209	9
scaffold_1	retained_intron	169539	169855	+	asmbl_1403,asmbl_1404	none	Trinity_GG_17335_c0_g1_i1,Trinity_GG_17335_c0_g1_i2,blat.proc3825164.chain_110,blat.proc3825164.chain_111	4	STRG.15.1,Trinity_GG_17335_c0_g2_i1,blat.proc3825164.chain_113	3
scaffold_12	retained_intron	10186262	10186424	-	asmbl_8735	none	blat.proc3825154.chain_3516	1	STRG.14994.1,STRG.14994.2,STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3515,blat.proc3825154.chain_3517,blat.proc3825154.chain_3518,blat.proc3825154.chain_3519,blat.proc3825154.chain_3520	9
scaffold_21	alternate_exon	5776477	5777823	-	asmbl_27695,asmbl_27697	none	STRG.24114.3,blat.proc3825160.chain_1200	2	blat.proc3825160.chain_1201,blat.proc3825160.chain_1204	2
scaffold_27	alternate_exon	3054645	3054745	+	asmbl_36178,asmbl_36180	none	STRG.28792.1,blat.proc3825178.chain_1821	2	STRG.28792.2,blat.proc3825178.chain_1823	2
scaffold_1	starts_in_intron	20349130	20349130	+	asmbl_2620	none	blat.proc3825164.chain_1585,blat.proc3825164.chain_1587,blat.proc3825164.chain_1588	3	STRG.1396.1,STRG.1396.6,blat.proc3825164.chain_1584	3
scaffold_15	spliced_intron	12525670	12525837	+	asmbl_15579	none	STRG.18706.1,blat.proc3825172.chain_3328	2	Trinity_GG_27572_c0_g1_i1,blat.proc3825172.chain_3329	2
scaffold_13	retained_intron	5506761	5506941	+	asmbl_10856,asmbl_10858	none	STRG.15845.1,STRG.15845.3,Trinity_GG_25977_c0_g1_i1,Trinity_GG_25977_c0_g1_i4,blat.proc3825172.chain_514,blat.proc3825172.chain_515	6	STRG.15845.2,Trinity_GG_25977_c0_g1_i2,blat.proc3825172.chain_516	3
scaffold_25	alt_acceptor	6083065	6083066	+	asmbl_33593	none	STRG.27488.2	1	STRG.27488.1,Trinity_GG_32459_c0_g1_i1,blat.proc3825178.chain_595	3
scaffold_11	alternate_exon	8624177	8624352	-	asmbl_6864	none	STRG.13880.1,Trinity_GG_7755_c0_g1_i1,blat.proc3825154.chain_2420	3	STRG.13880.2,Trinity_GG_7755_c0_g1_i2	2
scaffold_18	spliced_intron	1903420	1904370	-	asmbl_19659,asmbl_19661,asmbl_19665	none	STRG.21081.6,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014	3	STRG.21081.10,Trinity_GG_11794_c0_g2_i1,Trinity_GG_11794_c2_g1_i1,blat.proc3825158.chain_2020,blat.proc3825158.chain_2022	5
scaffold_18	alternate_exon	6776521	6776590	-	asmbl_19915	none	STRG.21382.1,blat.proc3825158.chain_2318	2	STRG.21382.2	1
scaffold_11	starts_in_intron	8637948	8637948	+	asmbl_5821	none	Trinity_GG_24946_c0_g1_i1,blat.proc3825170.chain_2409	2	STRG.13890.1,Trinity_GG_24946_c0_g1_i2,Trinity_GG_24946_c0_g1_i4,blat.proc3825170.chain_2410,blat.proc3825170.chain_2411	5
scaffold_3	ends_in_intron	16078872	16078872	-	asmbl_39477	none	blat.proc3825150.chain_9	1	STRG.3896.1,STRG.3896.2,STRG.3896.3,STRG.3896.4,blat.proc3825150.chain_7,blat.proc3825150.chain_8	6
scaffold_8	alt_acceptor	17815244	17815245	+	asmbl_53505,asmbl_53506,asmbl_53513	none	STRG.10693.1,STRG.10693.2,Trinity_GG_23223_c0_g1_i5,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3182,blat.proc3825168.chain_3183,blat.proc3825168.chain_3184	7	STRG.10693.4,blat.proc3825168.chain_3178	2
scaffold_6	alt_donor	18836329	18836330	+	asmbl_47852,asmbl_47853,asmbl_47854,asmbl_47855,asmbl_47857,asmbl_47858,asmbl_47859	none	STRG.8556.1,STRG.8556.2,STRG.8556.3,STRG.8556.4,STRG.8556.6,Trinity_GG_21987_c0_g1_i5,blat.proc3825168.chain_959,blat.proc3825168.chain_960,blat.proc3825168.chain_961,blat.proc3825168.chain_962	10	STRG.8556.5,blat.proc3825168.chain_963	2
scaffold_4	alternate_exon	4095213	4096132	+	asmbl_41227	none	blat.proc3825166.chain_709	1	blat.proc3825166.chain_710	1
scaffold_27	starts_in_intron	4000536	4000536	+	asmbl_36245,asmbl_36252,asmbl_36253	none	STRG.28871.4,STRG.28871.5,STRG.28871.6	3	STRG.28871.1,STRG.28871.2,STRG.28871.3,Trinity_GG_33286_c0_g1_i7,blat.proc3825178.chain_2033,blat.proc3825178.chain_2036,blat.proc3825178.chain_2038	7
scaffold_17	starts_in_intron	4696288	4696288	+	asmbl_18792	none	blat.proc3825174.chain_1021	1	STRG.20208.1,STRG.20208.2	2
scaffold_14	starts_in_intron	12122993	12122993	-	asmbl_13549	none	STRG.17543.1	1	STRG.17543.2	1
scaffold_17	alt_acceptor	10037011	10037012	-	asmbl_18224	none	Trinity_GG_11583_c0_g1_i1,blat.proc3825158.chain_1618	2	Trinity_GG_11583_c0_g1_i3,blat.proc3825158.chain_1619	2
scaffold_19	alt_acceptor	614555	614556	+	asmbl_21193	none	STRG.21842.2	1	STRG.21842.1,Trinity_GG_29397_c0_g1_i1,blat.proc3825174.chain_2892	3
scaffold_21	spliced_intron	3120017	3120306	+	asmbl_28446	none	STRG.23942.2	1	STRG.23942.1,Trinity_GG_30585_c1_g1_i1,blat.proc3825176.chain_1172,blat.proc3825176.chain_1173	4
scaffold_1	retained_intron	14359766	14359977	-	asmbl_903	none	Trinity_GG_546_c0_g1_i5,blat.proc3825148.chain_1033	2	STRG.1037.1,STRG.1037.2,STRG.1037.3,blat.proc3825148.chain_1031,blat.proc3825148.chain_1032,blat.proc3825148.chain_1034,blat.proc3825148.chain_1035	7
scaffold_19	alt_donor	7884792	7884793	-	asmbl_22265	none	STRG.22253.2	1	STRG.22253.1,blat.proc3825158.chain_3039	2
scaffold_28	retained_exon	6547487	6547549	-	asmbl_38354	none	STRG.29753.1	1	STRG.29753.4	1
scaffold_23	starts_in_intron	1141733	1141733	-	asmbl_30630	none	blat.proc3825160.chain_2732	1	STRG.25596.1,blat.proc3825160.chain_2731,blat.proc3825160.chain_2733,blat.proc3825160.chain_2734	4
scaffold_13	alt_donor	6426533	6426534	+	asmbl_10936	none	STRG.15942.2	1	STRG.15942.1	1
scaffold_20	spliced_intron	8394496	8394623	-	asmbl_25992	none	STRG.23390.2,blat.proc3825160.chain_501	2	STRG.23390.1,blat.proc3825160.chain_502	2
scaffold_23	retained_exon	2728666	2728728	+	asmbl_31422	none	STRG.25740.1,blat.proc3825176.chain_2701	2	STRG.25740.2,blat.proc3825176.chain_2702	2
scaffold_27	spliced_intron	160376	160481	-	asmbl_36653	none	STRG.28548.1,Trinity_GG_15971_c0_g1_i1,blat.proc3825162.chain_1776	3	STRG.28548.2,blat.proc3825162.chain_1777	2
scaffold_11	alt_donor	4683310	4683311	-	asmbl_6615	none	STRG.13564.5	1	STRG.13564.1,STRG.13564.2,STRG.13564.4,blat.proc3825154.chain_2144,blat.proc3825154.chain_2145,blat.proc3825154.chain_2147	6
scaffold_10	ends_in_intron	3065395	3065395	-	asmbl_4159	none	blat.proc3825154.chain_662	1	STRG.12130.1,STRG.12130.2,STRG.12130.3,blat.proc3825154.chain_663,blat.proc3825154.chain_664,blat.proc3825154.chain_666	6
scaffold_6	spliced_intron	3056924	3057109	+	asmbl_46798,asmbl_46800,asmbl_46801,asmbl_46803,asmbl_46805,asmbl_46806	none	STRG.7319.1,STRG.7319.2,STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3520,blat.proc3825166.chain_3521,blat.proc3825166.chain_3522,blat.proc3825166.chain_3523,blat.proc3825166.chain_3524	9	blat.proc3825166.chain_3519	1
scaffold_6	skipped_exon	13132632	13134965	-	asmbl_48879	none	STRG.8070.2,Trinity_GG_4584_c0_g1_i2,blat.proc3825152.chain_460	3	STRG.8070.1,blat.proc3825152.chain_458	2
scaffold_9	alt_acceptor	8395924	8395925	+	asmbl_54166,asmbl_54167,asmbl_54168,asmbl_54172,asmbl_54173	none	STRG.11261.1,STRG.11261.2,STRG.11261.3,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_63	6	blat.proc3825170.chain_62	1
scaffold_12	ends_in_intron	6398316	6398316	-	asmbl_8530	none	Trinity_GG_8242_c1_g1_i1,blat.proc3825154.chain_3282	2	STRG.14738.1,blat.proc3825154.chain_3280,blat.proc3825154.chain_3281	3
scaffold_2	alt_donor	16086662	16086663	-	asmbl_23670	none	blat.proc3825148.chain_2436	1	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2435,blat.proc3825148.chain_2437,blat.proc3825148.chain_2438	5
scaffold_26	retained_intron	7904645	7904751	+	asmbl_35157	none	Trinity_GG_33022_c0_g1_i2	1	STRG.28416.1	1
scaffold_4	spliced_intron	11986664	11986803	-	asmbl_42888	none	Trinity_GG_2680_c0_g1_i2,blat.proc3825150.chain_1002	2	STRG.4849.1,Trinity_GG_2680_c0_g1_i1,blat.proc3825150.chain_1001	3
scaffold_8	retained_intron	16397567	16398401	-	asmbl_52386,asmbl_52387,asmbl_52388,asmbl_52394,asmbl_52395	none	STRG.10626.1,STRG.10626.2,STRG.10626.4,blat.proc3825152.chain_2845,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	8	STRG.10626.3,blat.proc3825152.chain_2849	2
scaffold_4	retained_intron	1969732	1969832	+	asmbl_41147	none	STRG.4211.1,Trinity_GG_19631_c0_g1_i3,blat.proc3825166.chain_621	3	STRG.4211.2,Trinity_GG_19631_c0_g1_i1,blat.proc3825166.chain_620	3
scaffold_18	retained_intron	6423799	6424289	+	asmbl_20674	none	STRG.21370.2,Trinity_GG_29106_c1_g1_i1,blat.proc3825174.chain_2384,blat.proc3825174.chain_2387	4	STRG.21370.1,blat.proc3825158.chain_2297,blat.proc3825174.chain_2386	3
scaffold_1	spliced_intron	18749948	18749977	-	asmbl_1130	none	STRG.1309.1	1	STRG.1309.3,Trinity_GG_674_c0_g1_i3,blat.proc3825148.chain_1260	3
scaffold_10	spliced_intron	8331786	8331992	-	asmbl_4584	none	blat.proc3825154.chain_1182	1	blat.proc3825154.chain_1190	1
scaffold_17	ends_in_intron	3659729	3659729	+	asmbl_18728	none	blat.proc3825174.chain_1005	1	blat.proc3825174.chain_1003	1
scaffold_17	starts_in_intron	2276972	2276972	-	asmbl_17743	none	Trinity_GG_11232_c0_g1_i1,blat.proc3825158.chain_1061	2	STRG.20020.2,blat.proc3825158.chain_1062	2
scaffold_9	alt_acceptor	6396892	6396893	-	asmbl_55055	none	STRG.11174.2	1	STRG.11174.1,blat.proc3825152.chain_3362	2
scaffold_12	retained_exon	7617818	7617898	-	asmbl_8603,asmbl_8604,asmbl_8606,asmbl_8608	none	STRG.14840.1,STRG.14840.4,STRG.14840.5,blat.proc3825154.chain_3358,blat.proc3825154.chain_3359	5	STRG.14840.2,STRG.14840.3,STRG.14840.6	3
scaffold_20	ends_in_intron	10101742	10101742	+	asmbl_26926	none	STRG.23555.1,blat.proc3825176.chain_715	2	STRG.23555.2,STRG.23555.3,blat.proc3825176.chain_716,blat.proc3825176.chain_717	4
scaffold_17	spliced_intron	5137391	5138143	-	asmbl_17920	none	STRG.20247.3,blat.proc3825158.chain_1309	2	STRG.20247.4,blat.proc3825158.chain_1308	2
scaffold_3	alt_acceptor	6184096	6184097	-	asmbl_38915	none	STRG.3266.5	1	blat.proc3825148.chain_3121,blat.proc3825148.chain_3123	2
scaffold_1	retained_intron	13537007	13537217	-	asmbl_825	none	blat.proc3825148.chain_932	1	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_931,blat.proc3825148.chain_933	6
scaffold_6	retained_intron	13178612	13178919	-	asmbl_48893	none	STRG.8076.2,Trinity_GG_4593_c0_g1_i2,blat.proc3825152.chain_484	3	STRG.8076.1,blat.proc3825152.chain_483	2
scaffold_10	retained_intron	5823736	5824133	+	asmbl_3209	none	STRG.12406.1,blat.proc3825170.chain_1102	2	STRG.12406.3,Trinity_GG_24196_c0_g1_i3,blat.proc3825170.chain_1101	3
scaffold_24	ends_in_intron	5947820	5947820	+	asmbl_32266,asmbl_32271,asmbl_32272,asmbl_32275	none	blat.proc3825176.chain_3665,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3676	4	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	12
scaffold_2	alt_acceptor	7827117	7827118	-	asmbl_23281,asmbl_23284	none	STRG.2078.1,Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i3,blat.proc3825148.chain_2094,blat.proc3825148.chain_2095	5	STRG.2078.2,Trinity_GG_1152_c0_g1_i5,blat.proc3825148.chain_2093	3
scaffold_20	ends_in_intron	8582471	8582471	-	asmbl_26005	none	blat.proc3825160.chain_401	1	STRG.23410.1,Trinity_GG_13008_c1_g1_i1,blat.proc3825160.chain_399,blat.proc3825160.chain_400	4
scaffold_18	alt_donor	8436154	8436155	-	asmbl_20013	none	STRG.21523.3	1	STRG.21523.1,STRG.21523.2,Trinity_GG_12033_c0_g1_i2,blat.proc3825158.chain_2422,blat.proc3825158.chain_2423	5
scaffold_8	ends_in_intron	11953505	11953505	+	asmbl_53297	none	Trinity_GG_23095_c0_g1_i5	1	STRG.10399.1,blat.proc3825168.chain_2958	2
scaffold_1	starts_in_intron	13539288	13539288	-	asmbl_822,asmbl_824	none	Trinity_GG_496_c0_g1_i2,blat.proc3825148.chain_930,blat.proc3825148.chain_931	3	STRG.968.1,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_933	3
scaffold_13	starts_in_intron	7417355	7417355	-	asmbl_9878	none	blat.proc3825156.chain_937	1	STRG.16036.1,blat.proc3825156.chain_936	2
scaffold_13	starts_in_intron	656494	656494	+	asmbl_10498	none	STRG.15452.2,blat.proc3825172.chain_163	2	STRG.15452.1	1
scaffold_11	starts_in_intron	13552015	13552015	-	asmbl_7138	none	blat.proc3825154.chain_2701	1	STRG.14212.1,blat.proc3825154.chain_2702,blat.proc3825154.chain_2703	3
scaffold_18	spliced_intron	7631535	7631646	-	asmbl_19966	none	STRG.21463.3	1	STRG.21463.1,blat.proc3825158.chain_2394,blat.proc3825158.chain_2397	3
scaffold_7	starts_in_intron	5470488	5470488	+	asmbl_49812	none	Trinity_GG_22196_c0_g1_i2,blat.proc3825168.chain_1338	2	STRG.8875.1,Trinity_GG_22196_c0_g1_i1,blat.proc3825168.chain_1337	3
scaffold_26	alternate_exon	5662973	5663046	-	asmbl_35612,asmbl_35613	none	blat.proc3825162.chain_1527,blat.proc3825162.chain_1529	2	STRG.28272.1,STRG.28272.2,STRG.28272.3,blat.proc3825162.chain_1526,blat.proc3825162.chain_1528,blat.proc3825162.chain_1532	6
scaffold_11	alternate_exon	11637327	11637422	+	asmbl_5987	none	blat.proc3825170.chain_2637	1	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2634,blat.proc3825170.chain_2636,blat.proc3825170.chain_2638,blat.proc3825170.chain_2639	6
scaffold_27	alt_donor	1008204	1008205	-	asmbl_36737	none	STRG.28598.1,Trinity_GG_15972_c0_g1_i1,blat.proc3825162.chain_1778	3	STRG.28598.2	1
scaffold_21	alt_donor	3118194	3118195	-	asmbl_27511	none	STRG.23938.2,blat.proc3825160.chain_996	2	blat.proc3825160.chain_995	1
scaffold_16	spliced_intron	6135129	6135279	+	asmbl_16275,asmbl_16276	none	STRG.19347.1,STRG.19347.2,blat.proc3825174.chain_191,blat.proc3825174.chain_194	4	blat.proc3825174.chain_193	1
scaffold_18	retained_intron	632566	632655	+	asmbl_20311	none	STRG.21004.2,blat.proc3825174.chain_1852	2	STRG.21004.3	1
scaffold_4	alt_donor	19448563	19448564	+	asmbl_42148	none	STRG.5532.2	1	STRG.5532.1,blat.proc3825166.chain_1819	2
scaffold_8	skipped_exon	4872344	4873930	+	asmbl_52869,asmbl_52871	none	STRG.9952.2,STRG.9952.3,blat.proc3825168.chain_2518,blat.proc3825168.chain_2519	4	STRG.9952.1,blat.proc3825168.chain_2516,blat.proc3825168.chain_2517	3
scaffold_17	starts_in_intron	8564633	8564633	-	asmbl_18101	none	blat.proc3825158.chain_1458	1	STRG.20469.1,blat.proc3825158.chain_1459	2
scaffold_19	alt_acceptor	13742712	13742713	+	asmbl_21884	none	STRG.22688.1,Trinity_GG_29834_c0_g1_i3,blat.proc3825174.chain_3682	3	STRG.22688.2,Trinity_GG_29834_c0_g1_i1,blat.proc3825174.chain_3681	3
scaffold_16	alternate_exon	13206048	13216830	+	asmbl_16652	none	STRG.19781.2,blat.proc3825174.chain_693	2	blat.proc3825174.chain_692	1
scaffold_24	alt_acceptor	9679672	9679673	+	asmbl_32532	none	blat.proc3825178.chain_167	1	STRG.26956.1	1
scaffold_6	alternate_exon	16600310	16600377	-	asmbl_49143,asmbl_49144	none	STRG.8385.1,STRG.8385.2,blat.proc3825152.chain_770,blat.proc3825152.chain_772	4	STRG.8385.3	1
scaffold_2	spliced_intron	13403876	13404166	-	asmbl_23515	none	STRG.2366.1,blat.proc3825148.chain_2318	2	STRG.2366.2,blat.proc3825148.chain_2317,blat.proc3825148.chain_2319	3
scaffold_2	spliced_intron	14219858	14219944	-	asmbl_23580,asmbl_23582,asmbl_23583	none	STRG.2418.2,blat.proc3825148.chain_2354,blat.proc3825148.chain_2355,blat.proc3825148.chain_2358	4	blat.proc3825148.chain_2357	1
scaffold_7	spliced_intron	12270450	12271204	+	asmbl_50230,asmbl_50233,asmbl_50235	none	STRG.9326.2,STRG.9326.4,STRG.9326.6,Trinity_GG_22467_c0_g1_i4,Trinity_GG_22467_c0_g1_i5,blat.proc3825168.chain_1798,blat.proc3825168.chain_1806	7	STRG.9326.5,blat.proc3825168.chain_1801	2
scaffold_26	alt_acceptor	5404291	5404292	+	asmbl_34987	none	STRG.28247.1	1	blat.proc3825178.chain_1295	1
scaffold_10	alt_acceptor	5495941	5495942	-	asmbl_4367	none	blat.proc3825154.chain_927	1	STRG.12384.1,blat.proc3825154.chain_925,blat.proc3825154.chain_926	3
scaffold_9	spliced_intron	13279621	13279904	+	asmbl_54491,asmbl_54492	none	STRG.11625.1,STRG.11625.2,blat.proc3825170.chain_417,blat.proc3825170.chain_418	4	blat.proc3825170.chain_416	1
scaffold_3	skipped_exon	6076986	6079075	-	asmbl_38894	none	STRG.3258.1,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131	3	STRG.3258.2,STRG.3258.3,blat.proc3825148.chain_3126,blat.proc3825148.chain_3128	4
scaffold_4	alt_donor	17021200	17021201	-	asmbl_43243	none	STRG.5297.1,blat.proc3825150.chain_1469	2	blat.proc3825150.chain_1472	1
scaffold_20	retained_exon	1619050	1619133	-	asmbl_25589,asmbl_25592	none	STRG.22893.2,STRG.22893.4	2	STRG.22893.3	1
scaffold_10	alt_donor	976862	976863	-	asmbl_4019,asmbl_4020	none	STRG.11979.1,STRG.11979.2,Trinity_GG_6637_c0_g1_i3,Trinity_GG_6637_c0_g1_i5	4	Trinity_GG_6637_c0_g1_i6	1
scaffold_15	alt_donor	13055885	13055886	-	asmbl_14608	none	STRG.18743.2,blat.proc3825156.chain_3600	2	STRG.18743.1,blat.proc3825156.chain_3601	2
scaffold_16	alternate_exon	11953401	11954684	+	asmbl_16618	none	STRG.19723.1,Trinity_GG_28067_c0_g1_i3,blat.proc3825174.chain_557	3	STRG.19723.2,Trinity_GG_28067_c0_g1_i2,blat.proc3825174.chain_558	3
scaffold_5	starts_in_intron	2572276	2572276	+	asmbl_45185	none	Trinity_GG_20440_c0_g1_i2	1	STRG.5783.1,blat.proc3825166.chain_1969	2
scaffold_12	skipped_exon	7962352	7963104	+	asmbl_7800,asmbl_7801	none	STRG.14861.3,blat.proc3825170.chain_3359	2	STRG.14861.1,STRG.14861.2,blat.proc3825170.chain_3356,blat.proc3825170.chain_3358	4
scaffold_16	starts_in_intron	318413	318413	+	asmbl_16026	none	blat.proc3825172.chain_3679	1	STRG.19023.1,STRG.19023.2,Trinity_GG_27740_c0_g1_i3,blat.proc3825172.chain_3678,blat.proc3825172.chain_3680	5
scaffold_15	alt_donor	15130826	15130827	-	asmbl_14757	none	Trinity_GG_10621_c0_g1_i2,blat.proc3825158.chain_24	2	STRG.18901.1,Trinity_GG_10621_c0_g1_i1,blat.proc3825158.chain_23	3
scaffold_13	retained_exon	8810472	8810521	-	asmbl_9980,asmbl_9983,asmbl_9985	none	Trinity_GG_9086_c0_g1_i5,blat.proc3825156.chain_1065,blat.proc3825156.chain_1070,blat.proc3825156.chain_1073	4	blat.proc3825156.chain_1067	1
scaffold_23	alt_acceptor	10897605	10897606	+	asmbl_31891	none	STRG.26291.1,blat.proc3825176.chain_3258	2	STRG.26291.2,blat.proc3825176.chain_3256	2
scaffold_13	starts_in_intron	9779351	9779351	-	asmbl_10042	none	blat.proc3825156.chain_1133	1	STRG.16232.1,blat.proc3825156.chain_1135	2
scaffold_14	alternate_exon	9998340	9998998	-	asmbl_13400	none	STRG.17372.1,blat.proc3825156.chain_2186,blat.proc3825156.chain_2187	3	STRG.17372.2	1
scaffold_2	alt_donor	2010736	2010737	+	asmbl_24226	none	STRG.1654.1	1	STRG.1654.2	1
scaffold_11	alt_donor	11937126	11937127	-	asmbl_7042	none	STRG.14177.2	1	STRG.14177.3,STRG.14177.4	2
scaffold_26	spliced_intron	4925304	4925435	-	asmbl_35600	none	STRG.28205.2	1	STRG.28205.1,Trinity_GG_15797_c0_g1_i1,blat.proc3825162.chain_1463	3
scaffold_24	retained_exon	9119237	9119809	+	asmbl_32506	none	Trinity_GG_32221_c0_g1_i8,blat.proc3825178.chain_170,blat.proc3825178.chain_172	3	STRG.26942.1,blat.proc3825178.chain_173,blat.proc3825178.chain_175,blat.proc3825178.chain_176,blat.proc3825178.chain_177,blat.proc3825178.chain_178,blat.proc3825178.chain_179,blat.proc3825178.chain_180	8
scaffold_2	alt_acceptor	1338710	1338711	-	asmbl_22843	none	STRG.1598.1	1	blat.proc3825148.chain_1538	1
scaffold_2	spliced_intron	14220832	14221010	-	asmbl_23580,asmbl_23583,asmbl_23584,asmbl_23585	none	STRG.2418.2,blat.proc3825148.chain_2354,blat.proc3825148.chain_2356,blat.proc3825148.chain_2357,blat.proc3825148.chain_2358	5	blat.proc3825148.chain_2355	1
scaffold_5	spliced_intron	14126415	14126522	-	asmbl_44589	none	STRG.6623.1	1	blat.proc3825150.chain_2773	1
scaffold_12	skipped_exon	12307824	12309134	+	asmbl_7985	none	STRG.15133.4,blat.proc3825170.chain_3641	2	STRG.15133.1,STRG.15133.2,STRG.15133.5,blat.proc3825170.chain_3640	4
scaffold_1	alt_donor	16095748	16095749	-	asmbl_974,asmbl_975	none	STRG.1129.2,blat.proc3825148.chain_1118,blat.proc3825148.chain_1120	3	STRG.1129.3,STRG.1129.4,blat.proc3825148.chain_1117	3
scaffold_3	starts_in_intron	2670152	2670152	+	asmbl_39915	none	Trinity_GG_19024_c0_g1_i2,blat.proc3825164.chain_3265	2	STRG.3041.1,STRG.3041.2,STRG.3041.3,STRG.3041.4,blat.proc3825164.chain_3260,blat.proc3825164.chain_3262,blat.proc3825164.chain_3263,blat.proc3825164.chain_3264	8
scaffold_4	skipped_exon	19752549	19753056	+	asmbl_42161,asmbl_42162	none	STRG.5564.2,STRG.5564.3,Trinity_GG_20352_c0_g1_i4,blat.proc3825166.chain_1825	4	STRG.5564.1,Trinity_GG_20352_c0_g1_i3,blat.proc3825166.chain_1824	3
scaffold_5	alt_acceptor	5043013	5043014	+	asmbl_45326,asmbl_45327,asmbl_45328,asmbl_45331	none	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126,blat.proc3825166.chain_2127,blat.proc3825166.chain_2128	6	STRG.5958.3,STRG.5958.4	2
scaffold_13	ends_in_intron	7999824	7999824	-	asmbl_9931	none	Trinity_GG_9033_c0_g1_i8,blat.proc3825156.chain_969	2	STRG.16080.1,STRG.16080.2,STRG.16080.3,blat.proc3825156.chain_970,blat.proc3825156.chain_971,blat.proc3825156.chain_972,blat.proc3825156.chain_973,blat.proc3825156.chain_975	8
scaffold_14	retained_intron	8007646	8007816	+	asmbl_12190	none	Trinity_GG_26787_c0_g1_i6,blat.proc3825172.chain_1985	2	STRG.17217.3,Trinity_GG_26787_c0_g1_i2,blat.proc3825172.chain_1984	3
scaffold_5	spliced_intron	5026994	5027082	-	asmbl_44021,asmbl_44023	none	STRG.5956.1,blat.proc3825150.chain_2070,blat.proc3825150.chain_2071,blat.proc3825152.chain_2116	4	Trinity_GG_5490_c0_g1_i1	1
scaffold_19	spliced_intron	12822074	12822167	-	asmbl_22545,asmbl_22546,asmbl_22547,asmbl_22549,asmbl_22553,asmbl_22554	none	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3409,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3413,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	8	blat.proc3825158.chain_3412	1
scaffold_28	starts_in_intron	7397495	7397495	+	asmbl_37674	none	STRG.29809.2,blat.proc3825178.chain_2963	2	STRG.29809.1,Trinity_GG_33822_c0_g1_i2,blat.proc3825178.chain_2964	3
scaffold_8	alt_acceptor	3489239	3489240	+	asmbl_52768,asmbl_52769	none	STRG.9846.1,blat.proc3825168.chain_2395,blat.proc3825168.chain_2396	3	STRG.9846.2	1
scaffold_6	spliced_intron	18911268	18911384	-	asmbl_49287	none	STRG.8560.2	1	STRG.8560.1,blat.proc3825152.chain_1010,blat.proc3825152.chain_1011	3
scaffold_5	spliced_intron	12573137	12573215	-	asmbl_44475	none	STRG.6501.1,blat.proc3825150.chain_2690	2	blat.proc3825150.chain_2691	1
scaffold_15	ends_in_intron	12397519	12397519	-	asmbl_14574	none	Trinity_GG_10480_c0_g2_i1,blat.proc3825156.chain_3522	2	STRG.18695.3,STRG.18695.4,blat.proc3825156.chain_3518	3
scaffold_7	alternate_exon	2738642	2742613	+	asmbl_49667	none	STRG.8704.1,blat.proc3825168.chain_1145	2	STRG.8704.3	1
scaffold_11	spliced_intron	2446142	2446175	-	asmbl_6503	none	STRG.13398.1	1	STRG.13398.2,STRG.13398.3,Trinity_GG_7448_c0_g1_i1,blat.proc3825154.chain_1876	4
scaffold_4	skipped_exon	13762275	13763732	-	asmbl_43007	none	STRG.4997.3	1	STRG.4997.2,blat.proc3825150.chain_1144	2
scaffold_4	alt_donor	6499060	6499061	-	asmbl_42684	none	STRG.4512.1,blat.proc3825150.chain_769	2	STRG.4512.2,blat.proc3825150.chain_768	2
scaffold_16	retained_intron	5488508	5488595	-	asmbl_17109	none	STRG.19302.2,Trinity_GG_10796_c0_g1_i2,blat.proc3825158.chain_358	3	STRG.19302.1,Trinity_GG_10796_c0_g1_i3,blat.proc3825158.chain_359	3
scaffold_19	starts_in_intron	13011728	13011728	-	asmbl_22580	none	blat.proc3825158.chain_3454	1	STRG.22624.1,blat.proc3825158.chain_3455,blat.proc3825158.chain_3456	3
scaffold_9	ends_in_intron	2472297	2472297	-	asmbl_54877	none	STRG.10892.2	1	STRG.10892.1,blat.proc3825152.chain_3156,blat.proc3825152.chain_3157	3
scaffold_8	starts_in_intron	2852118	2852118	-	asmbl_51719	none	blat.proc3825152.chain_2094	1	STRG.9813.1,STRG.9813.2,blat.proc3825152.chain_2092,blat.proc3825152.chain_2093	4
scaffold_17	starts_in_intron	9179971	9179971	+	asmbl_19068	none	Trinity_GG_28554_c0_g1_i2,blat.proc3825174.chain_1379	2	STRG.20543.1,blat.proc3825174.chain_1378	2
scaffold_28	retained_intron	303659	303696	+	asmbl_37273	none	Trinity_GG_33561_c0_g1_i3,blat.proc3825178.chain_2507,blat.proc3825178.chain_2508	3	STRG.29264.1,blat.proc3825178.chain_2506,blat.proc3825178.chain_2509	3
scaffold_10	spliced_intron	13919739	13919961	+	asmbl_3633	none	STRG.12982.1,blat.proc3825170.chain_1583	2	STRG.12982.2	1
scaffold_13	alternate_exon	10229528	10241962	-	asmbl_10056	none	STRG.16258.4	1	STRG.16258.2,blat.proc3825156.chain_1118	2
scaffold_13	skipped_exon	13972028	13973853	+	asmbl_11414	none	blat.proc3825172.chain_1171	1	blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	2
scaffold_8	spliced_intron	16398423	16398835	-	asmbl_52385,asmbl_52386,asmbl_52387,asmbl_52392,asmbl_52395	none	STRG.10626.2,STRG.10626.3,STRG.10626.4,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2849,blat.proc3825152.chain_2851,blat.proc3825152.chain_2853	8	STRG.10626.1,blat.proc3825152.chain_2845,blat.proc3825152.chain_2852	3
scaffold_6	skipped_exon	2880569	2881381	-	asmbl_48182	none	STRG.7287.3,blat.proc3825150.chain_3406	2	STRG.7287.1,STRG.7287.2,blat.proc3825150.chain_3405,blat.proc3825150.chain_3407	4
scaffold_4	retained_exon	6282538	6282644	-	asmbl_42666,asmbl_42667,asmbl_42670,asmbl_42673,asmbl_42675	none	STRG.4498.1,STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i1,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,blat.proc3825150.chain_773,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_779	10	Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_778	2
scaffold_14	starts_in_intron	10782722	10782722	+	asmbl_12347	none	Trinity_GG_26895_c0_g1_i3,blat.proc3825172.chain_2179	2	STRG.17435.1,blat.proc3825172.chain_2177,blat.proc3825172.chain_2178	3
scaffold_8	retained_intron	10484487	10484569	+	asmbl_53174	none	blat.proc3825168.chain_2873	1	STRG.10286.1,blat.proc3825168.chain_2872	2
scaffold_2	retained_intron	884927	885046	+	asmbl_24123	none	blat.proc3825164.chain_1623	1	STRG.1564.2,STRG.1564.3,blat.proc3825164.chain_1624	3
scaffold_10	starts_in_intron	15382361	15382361	-	asmbl_4981	none	Trinity_GG_7327_c0_g1_i1,blat.proc3825154.chain_1675	2	STRG.13056.1,Trinity_GG_7327_c0_g1_i2,blat.proc3825154.chain_1674	3
scaffold_28	retained_intron	2811643	2811903	-	asmbl_38091	none	STRG.29471.4	1	STRG.29471.1,STRG.29471.2,STRG.29471.3,blat.proc3825162.chain_2598,blat.proc3825162.chain_2599	5
scaffold_5	skipped_exon	14679462	14680588	+	asmbl_45955	none	STRG.6672.2,Trinity_GG_20943_c0_g1_i1,blat.proc3825166.chain_2837	3	STRG.6672.1,Trinity_GG_20943_c0_g1_i4,blat.proc3825166.chain_2838	3
scaffold_19	alt_acceptor	10858075	10858076	-	asmbl_22366	none	STRG.22432.1	1	STRG.22432.2,blat.proc3825158.chain_3108	2
scaffold_12	skipped_exon	14041156	14041584	+	asmbl_8045	none	STRG.15233.2	1	STRG.15233.1,Trinity_GG_25691_c0_g1_i2,blat.proc3825170.chain_3714	3
scaffold_22	spliced_intron	7901370	7901566	-	asmbl_29442	none	STRG.25136.2,Trinity_GG_14049_c0_g1_i1,blat.proc3825160.chain_2290	3	STRG.25136.1,STRG.25136.3,Trinity_GG_14049_c0_g1_i2,blat.proc3825160.chain_2289	4
scaffold_10	alternate_exon	636020	636512	-	asmbl_3974	none	STRG.11945.1,blat.proc3825154.chain_484	2	STRG.11945.2,blat.proc3825154.chain_483	2
scaffold_4	starts_in_intron	15379615	15379615	-	asmbl_43093	none	blat.proc3825150.chain_1260	1	STRG.5131.1,blat.proc3825150.chain_1259	2
scaffold_22	ends_in_intron	323189	323189	+	asmbl_29843	none	blat.proc3825176.chain_1817	1	STRG.24686.1,blat.proc3825176.chain_1815,blat.proc3825176.chain_1819	3
scaffold_9	alternate_exon	16557005	16563814	-	asmbl_55584,asmbl_55585	none	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_271	5	Trinity_GG_6524_c0_g1_i13,Trinity_GG_6524_c0_g1_i4,blat.proc3825154.chain_265,blat.proc3825154.chain_269	4
scaffold_6	retained_intron	4320004	4320281	+	asmbl_46877,asmbl_46879,asmbl_46882	none	STRG.7409.1,Trinity_GG_21371_c0_g1_i7,blat.proc3825166.chain_3611,blat.proc3825166.chain_3612,blat.proc3825166.chain_3615	5	STRG.7409.3,blat.proc3825166.chain_3613	2
scaffold_2	alt_donor	18405378	18405379	-	asmbl_23779	none	STRG.2732.1,blat.proc3825148.chain_2669	2	STRG.2732.2	1
scaffold_9	skipped_exon	16282211	16284224	-	asmbl_55565	none	STRG.11778.1,blat.proc3825154.chain_239	2	STRG.11778.2,blat.proc3825154.chain_238	2
scaffold_11	alt_acceptor	9699806	9699807	-	asmbl_6953	none	STRG.13992.2	1	blat.proc3825154.chain_2535	1
scaffold_1	alternate_exon	18524215	18524340	-	asmbl_1123	none	blat.proc3825148.chain_1256	1	STRG.1303.1,blat.proc3825148.chain_1254	2
scaffold_28	starts_in_intron	2156923	2156923	+	asmbl_37337	none	Trinity_GG_33578_c0_g1_i1,blat.proc3825178.chain_2532	2	STRG.29382.1,blat.proc3825178.chain_2533	2
scaffold_7	retained_intron	4391769	4391853	+	asmbl_49733,asmbl_49735	none	Trinity_GG_22151_c0_g1_i3,blat.proc3825168.chain_1270	2	Trinity_GG_22151_c0_g1_i1,blat.proc3825168.chain_1271	2
scaffold_1	retained_intron	14190668	14191031	-	asmbl_871,asmbl_872	none	blat.proc3825148.chain_968,blat.proc3825148.chain_971	2	STRG.1005.1,blat.proc3825148.chain_969	2
scaffold_8	alternate_exon	9868030	9868366	+	asmbl_53122	none	STRG.10233.6	1	blat.proc3825168.chain_2815	1
scaffold_1	alternate_exon	850634	850698	+	asmbl_1422,asmbl_1423	none	STRG.42.3,STRG.42.4	2	STRG.42.1,STRG.42.2,STRG.42.5,Trinity_GG_17343_c0_g1_i1,Trinity_GG_17343_c0_g1_i2,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_125,blat.proc3825164.chain_126,blat.proc3825164.chain_127	9
scaffold_2	retained_intron	7220195	7220310	+	asmbl_24539,asmbl_24540,asmbl_24549,asmbl_24551	none	STRG.2054.5,STRG.2054.6,Trinity_GG_18495_c0_g1_i12,Trinity_GG_18495_c0_g1_i13,blat.proc3825164.chain_2269,blat.proc3825164.chain_2270,blat.proc3825164.chain_2274	7	STRG.2054.1,Trinity_GG_18495_c0_g1_i2,blat.proc3825164.chain_2267	3
scaffold_8	retained_intron	7986635	7986847	-	asmbl_51943	none	Trinity_GG_5617_c0_g1_i6,blat.proc3825152.chain_2337	2	STRG.10098.1,STRG.10098.2,Trinity_GG_5617_c0_g1_i2,Trinity_GG_5617_c0_g1_i4,blat.proc3825152.chain_2333,blat.proc3825152.chain_2334,blat.proc3825152.chain_2335	7
scaffold_5	alternate_exon	13789159	13789591	-	asmbl_44559	none	STRG.6591.1	1	STRG.6591.2,blat.proc3825150.chain_2787	2
scaffold_2	alternate_exon	924482	924731	+	asmbl_24157,asmbl_24159	none	STRG.1570.4,blat.proc3825164.chain_1629	2	STRG.1570.1,blat.proc3825164.chain_1625,blat.proc3825164.chain_1632	3
scaffold_1	retained_intron	14304985	14305075	+	asmbl_2378	none	blat.proc3825164.chain_1215	1	STRG.1021.1,blat.proc3825164.chain_1213	2
scaffold_5	starts_in_intron	15799920	15799920	-	asmbl_44729	none	blat.proc3825150.chain_2973	1	STRG.6776.1,STRG.6776.2	2
scaffold_9	alt_acceptor	16559310	16559311	-	asmbl_55583	none	STRG.11806.5	1	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7
scaffold_13	alt_donor	14174327	14174328	+	asmbl_11434	none	STRG.16460.2	1	STRG.16460.4,STRG.16460.5,Trinity_GG_26388_c0_g1_i2,Trinity_GG_26388_c0_g1_i7,blat.proc3825172.chain_1269,blat.proc3825172.chain_1270	6
scaffold_22	starts_in_intron	7895750	7895750	-	asmbl_29439	none	blat.proc3825160.chain_2268	1	STRG.25137.1,STRG.25137.2,blat.proc3825160.chain_2266	3
scaffold_15	alt_donor	12742145	12742146	+	asmbl_15602	none	blat.proc3825172.chain_3377	1	STRG.18732.1,STRG.18732.2,blat.proc3825172.chain_3378,blat.proc3825172.chain_3379	4
scaffold_17	retained_intron	1054915	1055189	-	asmbl_17668	none	STRG.19948.4,blat.proc3825158.chain_932	2	STRG.19948.3	1
scaffold_20	alt_acceptor	2759950	2759951	-	asmbl_25670,asmbl_25671	none	STRG.23018.2,STRG.23018.3	2	STRG.23018.1	1
scaffold_22	retained_intron	7341577	7341665	+	asmbl_30173	none	blat.proc3825176.chain_2143	1	STRG.25066.1,blat.proc3825176.chain_2144	2
scaffold_19	starts_in_intron	12133387	12133387	+	asmbl_21752	none	Trinity_GG_29777_c1_g1_i2,blat.proc3825174.chain_3555	2	STRG.22543.1	1
scaffold_2	ends_in_intron	7937294	7937294	+	asmbl_24600	none	Trinity_GG_18487_c1_g1_i1,blat.proc3825164.chain_2252	2	STRG.2090.1,Trinity_GG_18487_c0_g1_i6,Trinity_GG_18487_c0_g1_i7,Trinity_GG_18487_c0_g1_i9,Trinity_GG_18487_c0_g2_i1,blat.proc3825164.chain_2246,blat.proc3825164.chain_2247,blat.proc3825164.chain_2250	8
scaffold_4	ends_in_intron	5376360	5376360	-	asmbl_42602	none	STRG.4432.1,blat.proc3825150.chain_693	2	blat.proc3825150.chain_692	1
scaffold_26	alternate_exon	3266749	3266830	+	asmbl_34770	none	STRG.28011.3	1	STRG.28011.2,blat.proc3825178.chain_985,blat.proc3825178.chain_986	3
scaffold_6	alt_acceptor	18922318	18922319	-	asmbl_49294	none	STRG.8564.3	1	STRG.8564.2,Trinity_GG_4879_c0_g1_i2,blat.proc3825152.chain_994	3
scaffold_10	starts_in_intron	5173956	5173956	+	asmbl_3147	none	STRG.12343.3	1	STRG.12343.1,STRG.12343.2,blat.proc3825170.chain_990,blat.proc3825170.chain_991	4
scaffold_25	retained_intron	994851	995030	-	asmbl_34019	none	blat.proc3825162.chain_520	1	STRG.27160.1,blat.proc3825162.chain_518,blat.proc3825162.chain_519,blat.proc3825162.chain_521	4
scaffold_9	starts_in_intron	7873314	7873314	+	asmbl_54146	none	blat.proc3825170.chain_22	1	STRG.11229.1,blat.proc3825170.chain_23	2
scaffold_19	alt_donor	827940	827941	-	asmbl_22006	none	STRG.21882.1,STRG.21882.2,blat.proc3825158.chain_2705	3	STRG.21882.5,blat.proc3825158.chain_2702	2
scaffold_14	starts_in_intron	203705	203705	-	asmbl_12802	none	STRG.16713.5,blat.proc3825156.chain_1543	2	STRG.16713.1,STRG.16713.2,STRG.16713.4,blat.proc3825156.chain_1540,blat.proc3825156.chain_1541,blat.proc3825156.chain_1542	6
scaffold_15	starts_in_intron	4566185	4566185	+	asmbl_15163	none	Trinity_GG_27289_c0_g1_i1,blat.proc3825172.chain_2869	2	STRG.18186.1,STRG.18186.2,Trinity_GG_27289_c0_g1_i2,Trinity_GG_27289_c0_g1_i3,Trinity_GG_27289_c0_g1_i4,Trinity_GG_27289_c0_g1_i5,blat.proc3825172.chain_2865,blat.proc3825172.chain_2866,blat.proc3825172.chain_2867,blat.proc3825172.chain_2868	10
scaffold_26	spliced_intron	9774454	9775593	+	asmbl_35264,asmbl_35266,asmbl_35267	none	STRG.28516.1,STRG.28516.2,STRG.28516.6	3	STRG.28516.3,STRG.28516.4,STRG.28516.5,STRG.28516.7,Trinity_GG_33091_c0_g1_i3,blat.proc3825178.chain_1649,blat.proc3825178.chain_1653	7
scaffold_12	retained_intron	5140448	5141695	-	asmbl_8488	none	STRG.14687.1,Trinity_GG_8205_c0_g1_i1,blat.proc3825154.chain_3221,blat.proc3825154.chain_3223	4	STRG.14687.2,blat.proc3825154.chain_3224	2
scaffold_531	starts_in_intron	1099	1099	-	asmbl_46541	none	blat.proc3825162.chain_3482	1	STRG.30367.1,STRG.30367.2	2
scaffold_27	alt_acceptor	6266991	6266992	-	asmbl_37049	none	STRG.29018.1,blat.proc3825162.chain_2245	2	STRG.29018.2	1
scaffold_17	spliced_intron	11568197	11568238	+	asmbl_19236,asmbl_19239	none	STRG.20703.2,STRG.20703.3	2	STRG.20703.1,STRG.20703.4	2
scaffold_23	alt_donor	10198144	10198145	-	asmbl_31133,asmbl_31139,asmbl_31140	none	STRG.26231.1,STRG.26231.2,STRG.26231.3,blat.proc3825160.chain_3340	4	blat.proc3825160.chain_3339	1
scaffold_13	starts_in_intron	5545751	5545751	+	asmbl_10867	none	Trinity_GG_26030_c0_g1_i6,blat.proc3825172.chain_594	2	STRG.15858.1,Trinity_GG_26030_c0_g1_i1,blat.proc3825172.chain_595,blat.proc3825172.chain_596,blat.proc3825172.chain_597	5
scaffold_1	spliced_intron	6215109	6215240	-	asmbl_323	none	STRG.414.1,Trinity_GG_223_c1_g1_i2,blat.proc3825148.chain_389	3	STRG.414.2,Trinity_GG_223_c1_g1_i1,blat.proc3825148.chain_388	3
scaffold_7	alt_donor	18771300	18771301	-	asmbl_51504	none	blat.proc3825152.chain_1977	1	blat.proc3825152.chain_1978	1
scaffold_24	alt_donor	3444862	3444863	-	asmbl_32832	none	STRG.26548.3	1	STRG.26548.4,blat.proc3825160.chain_3622	2
scaffold_21	retained_intron	7009648	7009840	-	asmbl_27776,asmbl_27777,asmbl_27778	none	STRG.24233.2,blat.proc3825160.chain_1394,blat.proc3825160.chain_1395	3	STRG.24233.1,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393	5
scaffold_6	spliced_intron	300061	300175	+	asmbl_46647,asmbl_46648,asmbl_46649	none	STRG.7091.1,STRG.7091.2,STRG.7091.3	3	STRG.7091.4	1
scaffold_28	spliced_intron	3168895	3169011	+	asmbl_37450	none	Trinity_GG_33683_c0_g1_i1,blat.proc3825178.chain_2718	2	STRG.29529.2,STRG.29529.3,blat.proc3825162.chain_2706	3
scaffold_11	spliced_intron	6251734	6252621	+	asmbl_5620,asmbl_5625	none	STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237	3	STRG.13692.3,Trinity_GG_24860_c0_g1_i1,blat.proc3825170.chain_2240	3
scaffold_6	retained_exon	17886622	17886665	+	asmbl_47799	none	Trinity_GG_21935_c0_g1_i6,blat.proc3825168.chain_876	2	STRG.8482.1,Trinity_GG_21935_c0_g1_i4,blat.proc3825168.chain_875	3
scaffold_2	starts_in_intron	8301708	8301708	+	asmbl_24628	none	STRG.2114.4,blat.proc3825164.chain_2308	2	STRG.2114.2,STRG.2114.3,blat.proc3825164.chain_2311	3
scaffold_21	starts_in_intron	8529079	8529079	+	asmbl_28822	none	blat.proc3825176.chain_1462	1	STRG.24391.1,blat.proc3825176.chain_1459,blat.proc3825176.chain_1461,blat.proc3825176.chain_1464,blat.proc3825176.chain_1465	5
scaffold_18	retained_intron	8883548	8883630	-	asmbl_20035	none	STRG.21551.5,Trinity_GG_12055_c0_g1_i2,blat.proc3825158.chain_2470	3	STRG.21551.3,STRG.21551.4,Trinity_GG_12055_c0_g1_i3,blat.proc3825158.chain_2469	4
scaffold_1	alt_acceptor	3257715	3257716	+	asmbl_1581,asmbl_1582,asmbl_1583	none	STRG.205.1,STRG.205.2,Trinity_GG_17459_c0_g1_i4,blat.proc3825164.chain_319,blat.proc3825164.chain_320,blat.proc3825164.chain_321	6	blat.proc3825164.chain_322	1
scaffold_20	alt_acceptor	11538063	11538064	+	asmbl_27072	none	STRG.23659.2	1	STRG.23659.1	1
scaffold_7	spliced_intron	5915073	5915159	-	asmbl_50899,asmbl_50900,asmbl_50901,asmbl_50903,asmbl_50904	none	STRG.8897.1,STRG.8897.2,STRG.8897.3,blat.proc3825152.chain_1284,blat.proc3825152.chain_1285,blat.proc3825152.chain_1286,blat.proc3825152.chain_1287,blat.proc3825152.chain_1288	8	Trinity_GG_5028_c0_g1_i2,blat.proc3825152.chain_1289	2
scaffold_11	retained_intron	5821149	5821247	-	asmbl_6680	none	blat.proc3825154.chain_2217	1	STRG.13648.1,blat.proc3825154.chain_2216	2
scaffold_8	ends_in_intron	4749935	4749935	-	asmbl_51793	none	Trinity_GG_5538_c0_g1_i1,blat.proc3825152.chain_2187	2	STRG.9932.1,Trinity_GG_5538_c0_g1_i2,Trinity_GG_5538_c0_g1_i3,blat.proc3825152.chain_2188,blat.proc3825152.chain_2189	5
scaffold_3	alt_acceptor	3315306	3315307	+	asmbl_39950	none	blat.proc3825148.chain_2937	1	blat.proc3825148.chain_2938	1
scaffold_9	ends_in_intron	7608847	7608847	-	asmbl_55107	none	STRG.11220.2,blat.proc3825152.chain_3449	2	STRG.11220.1,blat.proc3825152.chain_3447	2
scaffold_19	spliced_intron	13154957	13155027	-	asmbl_22604,asmbl_22606	none	STRG.22639.2,blat.proc3825158.chain_3470,blat.proc3825158.chain_3471	3	STRG.22639.3,blat.proc3825158.chain_3473	2
scaffold_8	retained_exon	4340618	4340885	+	asmbl_52838	none	STRG.9915.2,blat.proc3825168.chain_2488	2	STRG.9915.1,blat.proc3825168.chain_2487	2
scaffold_5	alternate_exon	16202679	16203074	-	asmbl_44746	none	Trinity_GG_3826_c1_g1_i1,blat.proc3825150.chain_3002	2	STRG.6805.1	1
scaffold_6	alt_acceptor	17886620	17886621	+	asmbl_47799	none	Trinity_GG_21935_c0_g1_i6,blat.proc3825168.chain_876	2	STRG.8482.2,Trinity_GG_21935_c0_g1_i3,blat.proc3825168.chain_874	3
scaffold_5	retained_intron	19648196	19648470	+	asmbl_46328	none	STRG.7055.1,Trinity_GG_21183_c0_g1_i2,Trinity_GG_21183_c0_g1_i3,Trinity_GG_21183_c0_g1_i4,blat.proc3825166.chain_3244,blat.proc3825166.chain_3245,blat.proc3825166.chain_3247	7	STRG.7055.2	1
scaffold_15	ends_in_intron	10649400	10649400	-	asmbl_14443,asmbl_14445,asmbl_14446	none	STRG.18558.4,blat.proc3825156.chain_3413,blat.proc3825156.chain_3415,blat.proc3825156.chain_3419	4	STRG.18558.1,STRG.18558.2,blat.proc3825156.chain_3420	3
scaffold_22	retained_intron	5923249	5923359	+	asmbl_30069,asmbl_30070	none	STRG.24938.2,Trinity_GG_31103_c0_g1_i2,blat.proc3825176.chain_2046	3	STRG.24938.1,blat.proc3825176.chain_2045	2
scaffold_15	retained_intron	2434220	2434241	-	asmbl_14003	none	Trinity_GG_10089_c0_g1_i1	1	blat.proc3825156.chain_2760	1
scaffold_16	alternate_exon	14544286	14544695	-	asmbl_17463	none	STRG.19850.3	1	STRG.19850.2	1
scaffold_24	starts_in_intron	6905305	6905305	+	asmbl_32360	none	blat.proc3825176.chain_3705	1	STRG.26750.1,Trinity_GG_32100_c0_g1_i2,blat.proc3825176.chain_3706	3
scaffold_3	retained_exon	16078215	16078232	-	asmbl_39474,asmbl_39476	none	STRG.3896.2,STRG.3896.3,blat.proc3825150.chain_8	3	STRG.3896.1,STRG.3896.4,blat.proc3825150.chain_7	3
scaffold_5	alt_acceptor	6587657	6587658	-	asmbl_44106	none	blat.proc3825150.chain_2261	1	Trinity_GG_3404_c0_g1_i5,blat.proc3825150.chain_2257,blat.proc3825150.chain_2258,blat.proc3825150.chain_2260	4
scaffold_20	alternate_exon	10382832	10384362	+	asmbl_26954,asmbl_26959,asmbl_26961	none	STRG.23583.1,STRG.23583.2,STRG.23583.3,Trinity_GG_30302_c0_g1_i1,blat.proc3825176.chain_670	5	blat.proc3825176.chain_668	1
scaffold_5	spliced_intron	14022515	14022662	+	asmbl_45891	none	STRG.6610.2,Trinity_GG_20870_c0_g1_i2,blat.proc3825166.chain_2720	3	STRG.6610.1,Trinity_GG_20870_c0_g1_i1,blat.proc3825166.chain_2721	3
scaffold_28	alternate_exon	5232621	5237689	-	asmbl_38271	none	blat.proc3825162.chain_2780	1	Trinity_GG_16598_c0_g1_i3,blat.proc3825162.chain_2784	2
scaffold_1	starts_in_intron	11121900	11121900	+	asmbl_2069	none	Trinity_GG_17773_c0_g1_i3,blat.proc3825164.chain_879	2	STRG.732.1,STRG.732.2,blat.proc3825164.chain_878,blat.proc3825164.chain_880	4
scaffold_4	retained_intron	5228399	5228662	-	asmbl_42572,asmbl_42576	none	STRG.4416.1,STRG.4416.3,Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_651	4	blat.proc3825150.chain_650	1
scaffold_3	alt_acceptor	5951454	5951455	-	asmbl_38887	none	blat.proc3825148.chain_3161	1	STRG.3259.4,STRG.3259.5,blat.proc3825148.chain_3162	3
scaffold_18	ends_in_intron	613406	613406	+	asmbl_20306	none	blat.proc3825174.chain_1925	1	STRG.20999.1,blat.proc3825174.chain_1926	2
scaffold_1352	spliced_intron	1914	2398	+	asmbl_11722	none	STRG.30593.1	1	STRG.30593.2	1
scaffold_12	retained_intron	4784262	4784513	-	asmbl_8447,asmbl_8449	none	STRG.14660.3,Trinity_GG_8171_c0_g1_i15,blat.proc3825154.chain_3146	3	STRG.14660.1,STRG.14660.2,STRG.14660.4,blat.proc3825154.chain_3145,blat.proc3825154.chain_3147,blat.proc3825154.chain_3148,blat.proc3825154.chain_3150,blat.proc3825154.chain_3151,blat.proc3825154.chain_3152,blat.proc3825154.chain_3153	10
scaffold_15	alt_acceptor	1696485	1696486	+	asmbl_15031	none	STRG.17978.2	1	STRG.17978.1,blat.proc3825172.chain_2690	2
scaffold_21	alternate_exon	7498620	7499759	-	asmbl_27825	none	STRG.24281.1,blat.proc3825160.chain_1415	2	STRG.24281.2	1
scaffold_6	retained_intron	8636212	8636466	-	asmbl_48575	none	STRG.7743.2,Trinity_GG_4368_c0_g1_i3,blat.proc3825152.chain_115	3	STRG.7743.1,Trinity_GG_4368_c0_g1_i4,blat.proc3825152.chain_116	3
scaffold_70	spliced_intron	7908	7945	-	asmbl_51597	none	STRG.30108.2	1	STRG.30109.1	1
scaffold_6	retained_intron	8460271	8460401	+	asmbl_47126,asmbl_47129	none	STRG.7725.1,STRG.7725.4,blat.proc3825168.chain_154	3	STRG.7725.2,blat.proc3825168.chain_153	2
scaffold_17	alt_acceptor	2709582	2709583	+	asmbl_18687,asmbl_18689	none	STRG.20071.2,blat.proc3825174.chain_937,blat.proc3825174.chain_938	3	STRG.20071.1	1
scaffold_1	retained_intron	3498732	3498894	-	asmbl_152	none	blat.proc3825148.chain_217	1	STRG.221.1,STRG.221.2,STRG.221.4,blat.proc3825148.chain_213,blat.proc3825148.chain_214,blat.proc3825148.chain_215,blat.proc3825148.chain_216,blat.proc3825148.chain_218,blat.proc3825148.chain_219,blat.proc3825148.chain_220,blat.proc3825148.chain_221	11
scaffold_15	starts_in_intron	7224326	7224326	+	asmbl_15276	none	Trinity_GG_27351_c0_g1_i2,blat.proc3825172.chain_2979	2	STRG.18315.1,blat.proc3825172.chain_2978	2
scaffold_23	retained_intron	4899316	4899400	+	asmbl_31536	none	STRG.25884.3	1	STRG.25884.2,Trinity_GG_31591_c0_g1_i2,blat.proc3825176.chain_2819	3
scaffold_13	alt_acceptor	2653329	2653330	-	asmbl_9468	none	Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_380	2	STRG.15580.1,blat.proc3825156.chain_376,blat.proc3825156.chain_377,blat.proc3825156.chain_378	4
scaffold_20	spliced_intron	2137292	2137342	+	asmbl_26475	none	STRG.22952.1	1	STRG.22952.2,Trinity_GG_29964_c1_g1_i1,blat.proc3825176.chain_145	3
scaffold_8	alt_acceptor	4897728	4897729	+	asmbl_52873,asmbl_52877,asmbl_52878,asmbl_52879,asmbl_52880	none	STRG.9956.1,STRG.9956.3,blat.proc3825168.chain_2415,blat.proc3825168.chain_2416,blat.proc3825168.chain_2417,blat.proc3825168.chain_2418	6	STRG.9956.2	1
scaffold_4	starts_in_intron	7395980	7395980	-	asmbl_42718	none	blat.proc3825150.chain_807	1	STRG.4592.1,blat.proc3825150.chain_806	2
scaffold_13	alternate_exon	1326933	1330826	+	asmbl_10559	none	STRG.15504.1,blat.proc3825172.chain_291	2	STRG.15504.2,blat.proc3825172.chain_289	2
scaffold_1	skipped_exon	13883303	13885119	-	asmbl_853	none	STRG.996.2,blat.proc3825148.chain_1005	2	STRG.996.1,STRG.996.3,blat.proc3825148.chain_1003,blat.proc3825148.chain_1004	4
scaffold_21	retained_intron	11570695	11570754	-	asmbl_28133	none	STRG.24630.1	1	STRG.24630.2	1
scaffold_17	retained_intron	4186382	4186960	-	asmbl_17840,asmbl_17845	none	STRG.20171.2,blat.proc3825158.chain_1221	2	STRG.20171.1,blat.proc3825158.chain_1219	2
scaffold_2	alt_donor	17455949	17455950	+	asmbl_25166	none	STRG.2631.2,blat.proc3825164.chain_2879	2	STRG.2631.1	1
scaffold_4	starts_in_intron	16874080	16874080	-	asmbl_43226	none	Trinity_GG_2919_c0_g2_i1,blat.proc3825150.chain_1393	2	STRG.5273.1,STRG.5273.2,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	4
scaffold_27	retained_intron	6069445	6069599	+	asmbl_36369,asmbl_36370	none	STRG.29007.1,Trinity_GG_33364_c0_g1_i6,blat.proc3825178.chain_2208,blat.proc3825178.chain_2209	4	STRG.29007.2,blat.proc3825178.chain_2207	2
scaffold_12	alt_donor	14044947	14044948	-	asmbl_8962,asmbl_8963	none	STRG.15234.1,blat.proc3825156.chain_39	2	STRG.15234.2,blat.proc3825156.chain_37	2
scaffold_21	alt_acceptor	4781454	4781455	+	asmbl_28535	none	STRG.24023.1,Trinity_GG_30633_c0_g1_i1,blat.proc3825176.chain_1248	3	STRG.24023.2	1
scaffold_9	alt_acceptor	11889840	11889841	+	asmbl_54393	none	STRG.11516.2	1	STRG.11516.1,blat.proc3825170.chain_339	2
scaffold_7	retained_intron	4544285	4544372	+	asmbl_49745	none	blat.proc3825168.chain_1301	1	STRG.8829.1,blat.proc3825168.chain_1298,blat.proc3825168.chain_1299,blat.proc3825168.chain_1300	4
scaffold_24	alt_donor	10267198	10267199	-	asmbl_33169	none	STRG.26978.1,blat.proc3825162.chain_330	2	STRG.26978.2	1
scaffold_28	retained_intron	230628	230710	+	asmbl_37257	none	blat.proc3825178.chain_2480	1	STRG.29253.1,STRG.29253.2,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483,blat.proc3825178.chain_2485	5
scaffold_20	alt_donor	1490365	1490366	+	asmbl_26417,asmbl_26419	none	STRG.22869.1,STRG.22869.6	2	STRG.22869.2,STRG.22869.3	2
scaffold_11	alternate_exon	7048375	7049050	+	asmbl_5648	none	STRG.13733.5,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270	3	STRG.13733.2,STRG.13733.3	2
scaffold_1	skipped_exon	16096299	16097022	-	asmbl_972,asmbl_973,asmbl_974,asmbl_976	none	STRG.1129.1,STRG.1129.2,STRG.1129.3,STRG.1129.4,blat.proc3825148.chain_1117,blat.proc3825148.chain_1120	6	blat.proc3825148.chain_1118	1
scaffold_13	alt_donor	10237093	10237094	-	asmbl_10053,asmbl_10054	none	STRG.16258.1,STRG.16258.3,blat.proc3825156.chain_1115,blat.proc3825156.chain_1116	4	STRG.16258.4	1
scaffold_21	starts_in_intron	5284192	5284192	-	asmbl_27639,asmbl_27647	none	STRG.24066.4,STRG.24066.5	2	STRG.24066.1,STRG.24066.2,STRG.24066.3,blat.proc3825160.chain_1166,blat.proc3825160.chain_1167	5
scaffold_7	retained_intron	6205363	6205464	+	asmbl_49852	none	STRG.8919.1,Trinity_GG_22235_c1_g1_i1,blat.proc3825168.chain_1418	3	STRG.8919.2	1
scaffold_1	alternate_exon	14364086	14365238	-	asmbl_904	none	STRG.1037.2,blat.proc3825148.chain_1034	2	STRG.1037.1,blat.proc3825148.chain_1032,blat.proc3825148.chain_1035	3
scaffold_9	ends_in_intron	2813101	2813101	-	asmbl_54889	none	blat.proc3825152.chain_3166	1	STRG.10923.1	1
scaffold_2	alt_donor	8148437	8148438	-	asmbl_23318	none	STRG.2099.2	1	STRG.2099.1,blat.proc3825148.chain_2126	2
scaffold_9	alternate_exon	8503599	8507527	-	asmbl_55134	none	STRG.11265.1,Trinity_GG_6223_c0_g1_i1,blat.proc3825152.chain_3473	3	STRG.11265.2,Trinity_GG_6223_c0_g1_i2,blat.proc3825152.chain_3474	3
scaffold_9	alt_acceptor	17450694	17450695	+	asmbl_54630,asmbl_54632	none	STRG.11838.1,STRG.11838.2,blat.proc3825170.chain_639	3	STRG.11838.3	1
scaffold_5	alternate_exon	10535059	10535138	-	asmbl_44359	none	STRG.6342.1,blat.proc3825150.chain_2541	2	STRG.6342.2,STRG.6342.3,blat.proc3825150.chain_2542	3
scaffold_2	retained_intron	2872107	2872884	-	asmbl_22931	none	STRG.1736.1,blat.proc3825148.chain_1663,blat.proc3825148.chain_1665	3	STRG.1736.2,blat.proc3825148.chain_1661,blat.proc3825148.chain_1664	3
scaffold_6	ends_in_intron	3052527	3052527	+	asmbl_46797	none	blat.proc3825166.chain_3525	1	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4
scaffold_27	ends_in_intron	2902169	2902169	-	asmbl_36870	none	STRG.28776.3,blat.proc3825162.chain_1965	2	STRG.28776.1,STRG.28776.2,Trinity_GG_16082_c0_g1_i2,blat.proc3825162.chain_1966	4
scaffold_22	retained_intron	4239535	4239758	-	asmbl_29212,asmbl_29219	none	STRG.24845.1,blat.proc3825160.chain_2067,blat.proc3825160.chain_2068	3	STRG.24845.3,blat.proc3825160.chain_2066	2
scaffold_6	skipped_exon	9909894	9911434	+	asmbl_47249	none	STRG.7832.2	1	STRG.7832.1	1
scaffold_5	starts_in_intron	9704883	9704883	-	asmbl_44296,asmbl_44299	none	blat.proc3825150.chain_2497,blat.proc3825150.chain_2501	2	STRG.6293.2,STRG.6293.3,STRG.6293.4,blat.proc3825150.chain_2499,blat.proc3825150.chain_2502,blat.proc3825150.chain_2503,blat.proc3825150.chain_2505	7
scaffold_28	skipped_exon	6546537	6547929	-	asmbl_38356	none	STRG.29753.3	1	STRG.29753.1,STRG.29753.2,STRG.29753.4	3
scaffold_14	alternate_exon	13599832	13599975	+	asmbl_12487	none	blat.proc3825172.chain_2302	1	STRG.17648.2,blat.proc3825172.chain_2301	2
scaffold_9	retained_exon	8395320	8395534	+	asmbl_54173	none	STRG.11261.2	1	STRG.11261.3,blat.proc3825170.chain_63	2
scaffold_13	alt_acceptor	12244972	12244973	+	asmbl_11345,asmbl_11346	none	STRG.16354.1,STRG.16354.2	2	STRG.16354.3	1
scaffold_27	retained_intron	2883096	2883240	-	asmbl_36866	none	STRG.28772.3,blat.proc3825162.chain_2015	2	STRG.28772.1,STRG.28772.2,blat.proc3825162.chain_2014	3
scaffold_8	alt_acceptor	5742352	5742353	+	asmbl_52902	none	STRG.9996.1,blat.proc3825168.chain_2568	2	STRG.9996.2	1
scaffold_15	starts_in_intron	3006628	3006628	+	asmbl_15088	none	Trinity_GG_27228_c0_g2_i1,blat.proc3825172.chain_2758	2	STRG.18089.1,blat.proc3825172.chain_2756	2
scaffold_14	alt_donor	7495698	7495699	+	asmbl_12168	none	STRG.17193.1,blat.proc3825172.chain_1881	2	STRG.17193.3	1
scaffold_28	skipped_exon	3320505	3322855	+	asmbl_37473	none	STRG.29549.1,blat.proc3825178.chain_2736	2	STRG.29549.2	1
scaffold_9	alt_acceptor	11822099	11822100	-	asmbl_55315	none	STRG.11502.1	1	STRG.11502.5	1
scaffold_13	spliced_intron	9223165	9223239	+	asmbl_11178	none	STRG.16181.2	1	STRG.16181.1,blat.proc3825172.chain_875	2
scaffold_2	alt_donor	17717795	17717796	-	asmbl_23743	none	STRG.2669.2,blat.proc3825148.chain_2606	2	STRG.2669.1,blat.proc3825148.chain_2607	2
scaffold_5	starts_in_intron	17324201	17324201	+	asmbl_46167,asmbl_46170	none	Trinity_GG_21103_c0_g1_i9,blat.proc3825166.chain_3098,blat.proc3825166.chain_3099	3	Trinity_GG_21103_c0_g1_i2,blat.proc3825166.chain_3101	2
scaffold_11	spliced_intron	6952172	6952274	-	asmbl_6746,asmbl_6747,asmbl_6750	none	STRG.13721.1,STRG.13721.2,blat.proc3825154.chain_2295,blat.proc3825154.chain_2297,blat.proc3825154.chain_2298	5	STRG.13721.3,blat.proc3825154.chain_2294,blat.proc3825154.chain_2296	3
scaffold_15	alternate_exon	11142117	11142185	-	asmbl_14487	none	blat.proc3825156.chain_3385	1	blat.proc3825156.chain_3380	1
scaffold_28	alt_donor	3839509	3839510	+	asmbl_37495	none	blat.proc3825178.chain_2781	1	STRG.29579.1,blat.proc3825178.chain_2778,blat.proc3825178.chain_2780	3
scaffold_15	retained_intron	4964468	4964665	+	asmbl_15182	none	STRG.18207.4	1	Trinity_GG_27299_c0_g1_i8,Trinity_GG_27299_c0_g1_i9,blat.proc3825172.chain_2890,blat.proc3825172.chain_2892,blat.proc3825172.chain_2893,blat.proc3825172.chain_2895	6
scaffold_7	starts_in_intron	7770878	7770878	+	asmbl_49937	none	Trinity_GG_22300_c0_g1_i1,blat.proc3825168.chain_1510	2	STRG.9024.1,Trinity_GG_22300_c0_g1_i2,blat.proc3825168.chain_1509	3
scaffold_21	alt_acceptor	11261521	11261522	-	asmbl_28108,asmbl_28109	none	Trinity_GG_13755_c0_g1_i3,Trinity_GG_13755_c0_g1_i4,blat.proc3825160.chain_1802,blat.proc3825160.chain_1803	4	STRG.24600.1,Trinity_GG_13755_c0_g1_i5,blat.proc3825160.chain_1804	3
scaffold_14	alt_acceptor	7999483	7999484	+	asmbl_12180	none	STRG.17215.1,blat.proc3825172.chain_1972	2	STRG.17215.2,STRG.17215.3,Trinity_GG_26782_c0_g1_i1,blat.proc3825172.chain_1971	4
scaffold_7	spliced_intron	3955080	3955398	-	asmbl_50829,asmbl_50832,asmbl_50833,asmbl_50835	none	STRG.8794.1,blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1228,blat.proc3825152.chain_1230	5	blat.proc3825152.chain_1229	1
scaffold_20	spliced_intron	10384754	10385038	+	asmbl_26954,asmbl_26955,asmbl_26959,asmbl_26961	none	STRG.23583.1,STRG.23583.2,STRG.23583.3,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_670,blat.proc3825176.chain_671	7	blat.proc3825176.chain_672	1
scaffold_3	starts_in_intron	6662661	6662661	+	asmbl_40119	none	Trinity_GG_19179_c2_g1_i1,blat.proc3825164.chain_3555	2	STRG.3296.1,STRG.3296.2,Trinity_GG_19179_c1_g2_i1	3
scaffold_13	spliced_intron	16048875	16048994	+	asmbl_11546	none	STRG.16642.2	1	STRG.16642.3	1
scaffold_20	alternate_exon	11182967	11183042	-	asmbl_26149	none	STRG.23631.2,blat.proc3825160.chain_716	2	STRG.23631.1,blat.proc3825160.chain_717	2
scaffold_13	alternate_exon	12868175	12868667	-	asmbl_10143	none	STRG.16379.1	1	STRG.16379.3,Trinity_GG_9176_c0_g1_i1,blat.proc3825156.chain_1236	3
scaffold_15	ends_in_intron	2896837	2896837	-	asmbl_14060,asmbl_14061	none	STRG.18078.5,STRG.18078.6,Trinity_GG_10159_c1_g1_i1,blat.proc3825156.chain_2891	4	STRG.18078.2	1
scaffold_21	alt_acceptor	10868428	10868429	-	asmbl_28082	none	STRG.24561.1,blat.proc3825160.chain_1796	2	STRG.24561.2	1
scaffold_8	retained_exon	11854228	11854268	+	asmbl_53279,asmbl_53288	none	STRG.10390.4,STRG.10390.5	2	STRG.10390.3,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	4
scaffold_15	alt_acceptor	4520251	4520252	-	asmbl_14147	none	STRG.18183.1	1	STRG.18183.2	1
scaffold_3	retained_intron	14495657	14495730	-	asmbl_39378	none	STRG.3790.1	1	blat.proc3825148.chain_3721	1
scaffold_24	spliced_intron	10604358	10604689	+	asmbl_32578,asmbl_32579,asmbl_32581,asmbl_32582,asmbl_32583	none	STRG.27028.1,STRG.27028.2,Trinity_GG_32236_c0_g1_i3,Trinity_GG_32236_c0_g1_i5,blat.proc3825178.chain_218,blat.proc3825178.chain_219,blat.proc3825178.chain_221,blat.proc3825178.chain_222	8	STRG.27028.3,blat.proc3825178.chain_220	2
scaffold_2	starts_in_intron	14275910	14275910	+	asmbl_24900	none	STRG.2428.3	1	STRG.2428.1,STRG.2428.2,blat.proc3825164.chain_2591,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596,blat.proc3825164.chain_2597	6
scaffold_1	spliced_intron	849299	849972	+	asmbl_1419	none	STRG.42.1,Trinity_GG_17343_c0_g1_i2,blat.proc3825164.chain_125	3	Trinity_GG_17343_c0_g1_i4,blat.proc3825164.chain_128	2
scaffold_21	alternate_exon	6392213	6392769	+	asmbl_28631	none	STRG.24166.2,Trinity_GG_30650_c4_g1_i1,blat.proc3825176.chain_1285	3	STRG.24166.1,blat.proc3825176.chain_1282	2
scaffold_18	spliced_intron	4071656	4072114	-	asmbl_19790	none	STRG.21204.3	1	STRG.21204.2,blat.proc3825158.chain_2168	2
scaffold_9	retained_exon	15221955	15222080	-	asmbl_55512,asmbl_55513	none	STRG.11725.2,STRG.11725.3,blat.proc3825154.chain_190	3	STRG.11725.1,blat.proc3825154.chain_191	2
scaffold_8	starts_in_intron	11630940	11630940	+	asmbl_53254	none	Trinity_GG_23092_c0_g1_i4,blat.proc3825168.chain_2950	2	STRG.10373.1,STRG.10373.2,blat.proc3825168.chain_2948,blat.proc3825168.chain_2949,blat.proc3825168.chain_2951	5
scaffold_11	spliced_intron	38298	38788	+	asmbl_5254	none	blat.proc3825170.chain_1799	1	STRG.13238.3	1
scaffold_20	alternate_exon	2724362	2725064	+	asmbl_26502	none	STRG.23001.2	1	STRG.23001.1,Trinity_GG_29993_c0_g1_i1,blat.proc3825176.chain_186	3
scaffold_12	skipped_exon	26480	28451	-	asmbl_8261	none	STRG.14411.2,blat.proc3825154.chain_2930	2	STRG.14411.1,STRG.14411.3,blat.proc3825154.chain_2931	3
scaffold_1	spliced_intron	9306890	9306967	+	asmbl_1979,asmbl_1981	none	STRG.628.1,blat.proc3825164.chain_747,blat.proc3825164.chain_748	3	blat.proc3825164.chain_746	1
scaffold_6	retained_intron	8580963	8581085	+	asmbl_47150,asmbl_47151,asmbl_47154	none	STRG.7738.1,blat.proc3825168.chain_179,blat.proc3825168.chain_181	3	STRG.7738.2,STRG.7738.3	2
scaffold_17	skipped_exon	2355039	2355866	+	asmbl_18641	none	STRG.20030.6	1	STRG.20030.2,STRG.20030.4	2
scaffold_26	alt_acceptor	4690496	4690497	-	asmbl_35587	none	STRG.28194.2	1	STRG.28194.1,STRG.28194.3,blat.proc3825162.chain_1410,blat.proc3825162.chain_1412	4
scaffold_4	spliced_intron	5651423	5651635	-	asmbl_42616,asmbl_42619,asmbl_42620,asmbl_42624,asmbl_42625,asmbl_42627,asmbl_42628	none	STRG.4472.1,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_663,blat.proc3825150.chain_664,blat.proc3825150.chain_666,blat.proc3825150.chain_667	8	STRG.4472.2,blat.proc3825150.chain_658,blat.proc3825150.chain_668	3
scaffold_3	starts_in_intron	13146417	13146417	+	asmbl_40427	none	STRG.3681.2	1	STRG.3681.1,blat.proc3825166.chain_135,blat.proc3825166.chain_136,blat.proc3825166.chain_137	4
scaffold_369	spliced_intron	1680	1727	+	asmbl_41051	none	STRG.30301.2	1	STRG.30301.1	1
scaffold_13	spliced_intron	7217965	7218245	+	asmbl_11021	none	blat.proc3825172.chain_809	1	blat.proc3825172.chain_814,blat.proc3825172.chain_816	2
scaffold_4	retained_exon	10472211	10472318	+	asmbl_41665	none	STRG.4799.1,blat.proc3825166.chain_1174	2	STRG.4799.2	1
scaffold_17	starts_in_intron	829871	829871	-	asmbl_17653	none	blat.proc3825158.chain_981	1	STRG.19933.1,blat.proc3825158.chain_980	2
scaffold_14	starts_in_intron	12002333	12002333	+	asmbl_12412	none	STRG.17540.2,Trinity_GG_26946_c0_g1_i1,blat.proc3825172.chain_2259	3	STRG.17540.1	1
scaffold_2	spliced_intron	888658	888818	+	asmbl_24131,asmbl_24134	none	STRG.1565.5,blat.proc3825164.chain_1715	2	STRG.1565.2,Trinity_GG_18210_c1_g1_i3,blat.proc3825164.chain_1713	3
scaffold_21	skipped_exon	257153	257645	-	asmbl_27282,asmbl_27284,asmbl_27287,asmbl_27288	none	STRG.23725.2,STRG.23725.5,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_804,blat.proc3825160.chain_811,blat.proc3825160.chain_813	6	STRG.23725.6	1
scaffold_3	retained_intron	9518619	9518734	+	asmbl_40225	none	Trinity_GG_19245_c0_g1_i2,blat.proc3825164.chain_3674	2	STRG.3436.1,STRG.3436.2,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3676,blat.proc3825164.chain_3677,blat.proc3825164.chain_3678	7
scaffold_23	alt_acceptor	1996779	1996780	-	asmbl_30680	none	STRG.25671.1,blat.proc3825160.chain_2806	2	STRG.25671.2	1
scaffold_9	alternate_exon	648647	648813	+	asmbl_53786	none	STRG.10795.2,blat.proc3825168.chain_3338	2	STRG.10795.1,STRG.10795.3,blat.proc3825168.chain_3339,blat.proc3825168.chain_3340	4
scaffold_17	alternate_exon	5424565	5424601	-	asmbl_17935	none	STRG.20260.2,blat.proc3825158.chain_1301	2	STRG.20260.1,blat.proc3825158.chain_1300	2
scaffold_1	spliced_intron	12410452	12410983	+	asmbl_2213	none	STRG.855.2	1	Trinity_GG_17839_c0_g1_i1,blat.proc3825164.chain_1024	2
scaffold_3	starts_in_intron	1470927	1470927	+	asmbl_39851	none	Trinity_GG_18988_c0_g1_i1,blat.proc3825164.chain_3201	2	Trinity_GG_18988_c0_g1_i2,blat.proc3825164.chain_3202	2
scaffold_5	retained_intron	14601535	14601964	-	asmbl_44604	none	STRG.6661.1,Trinity_GG_3719_c0_g1_i1,blat.proc3825150.chain_2805	3	STRG.6661.2,blat.proc3825150.chain_2806	2
scaffold_10	alt_acceptor	17502972	17502973	+	asmbl_3780	none	STRG.13203.2	1	STRG.13203.1,Trinity_GG_24553_c0_g1_i1,blat.proc3825170.chain_1730	3
scaffold_17	skipped_exon	2355973	2358162	+	asmbl_18639,asmbl_18640	none	STRG.20030.2,STRG.20030.7	2	STRG.20030.1,STRG.20030.4,STRG.20030.5,STRG.20030.6,blat.proc3825174.chain_907,blat.proc3825174.chain_909	6
scaffold_16	spliced_intron	7910328	7910505	+	asmbl_16360,asmbl_16362	none	STRG.19445.1,Trinity_GG_27913_c0_g1_i1,blat.proc3825174.chain_282,blat.proc3825174.chain_283	4	Trinity_GG_27913_c0_g1_i2,blat.proc3825174.chain_281	2
scaffold_19	retained_intron	810594	810631	+	asmbl_21212	none	STRG.21863.1	1	STRG.21863.2	1
scaffold_7	spliced_intron	9312366	9312531	+	asmbl_50074,asmbl_50075	none	STRG.9144.1,Trinity_GG_22395_c0_g1_i3,Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669,blat.proc3825168.chain_1671	5	Trinity_GG_22395_c0_g1_i2,blat.proc3825168.chain_1670	2
scaffold_14	skipped_exon	11572188	11574063	-	asmbl_13501	none	blat.proc3825156.chain_2302	1	STRG.17499.2,blat.proc3825156.chain_2304	2
scaffold_25	alternate_exon	9940483	9943899	-	asmbl_34533	none	STRG.27806.3,blat.proc3825162.chain_1154	2	STRG.27806.1,STRG.27806.2	2
scaffold_4	spliced_intron	19274656	19274833	-	asmbl_43418,asmbl_43419,asmbl_43420	none	STRG.5511.1,Trinity_GG_3099_c0_g1_i2,blat.proc3825150.chain_1705,blat.proc3825150.chain_1706,blat.proc3825150.chain_1707	5	Trinity_GG_3099_c0_g1_i3,blat.proc3825150.chain_1704	2
scaffold_2	spliced_intron	14560511	14560637	+	asmbl_24962	none	blat.proc3825164.chain_2659	1	Trinity_GG_18675_c0_g1_i21,blat.proc3825164.chain_2655	2
scaffold_3	retained_exon	14513521	14513574	-	asmbl_39387	none	STRG.3791.1	1	STRG.3791.3,Trinity_GG_2101_c0_g1_i1,blat.proc3825148.chain_3738	3
scaffold_7	alternate_exon	6623591	6624508	+	asmbl_49870	none	STRG.8935.3,Trinity_GG_22249_c1_g1_i1,blat.proc3825168.chain_1433	3	STRG.8935.1,STRG.8935.2,Trinity_GG_22249_c0_g1_i1,blat.proc3825168.chain_1432	4
scaffold_5	starts_in_intron	11960473	11960473	+	asmbl_45777	none	Trinity_GG_20831_c0_g1_i1,blat.proc3825166.chain_2666	2	STRG.6446.1	1
scaffold_23	alt_donor	1673608	1673609	-	asmbl_30669	none	STRG.25646.1,blat.proc3825160.chain_2818	2	STRG.25646.2	1
scaffold_13	starts_in_intron	9548421	9548421	+	asmbl_11206	none	Trinity_GG_26233_c1_g1_i2,blat.proc3825172.chain_1019	2	STRG.16217.1,blat.proc3825172.chain_1018	2
scaffold_10	retained_exon	5175651	5175802	+	asmbl_3149	none	STRG.12343.2,blat.proc3825170.chain_991	2	STRG.12343.1,STRG.12343.3,blat.proc3825170.chain_988,blat.proc3825170.chain_990	4
scaffold_12	alt_acceptor	4204910	4204911	+	asmbl_7587	none	STRG.14600.2,Trinity_GG_25384_c0_g1_i1,blat.proc3825170.chain_3173	3	STRG.14600.3	1
scaffold_24	retained_intron	5948199	5949651	+	asmbl_32253	none	Trinity_GG_32084_c0_g1_i11,blat.proc3825176.chain_3673	2	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	12
scaffold_24	spliced_intron	8954743	8954815	+	asmbl_32460	none	STRG.26917.1,Trinity_GG_32185_c0_g1_i1,blat.proc3825178.chain_102	3	Trinity_GG_32185_c0_g1_i3,blat.proc3825178.chain_103,blat.proc3825178.chain_104	3
scaffold_5	ends_in_intron	18180625	18180625	+	asmbl_46211	none	Trinity_GG_21146_c1_g1_i3,blat.proc3825166.chain_3179	2	STRG.6956.1,STRG.6956.2,STRG.6956.3,Trinity_GG_21146_c1_g1_i2,Trinity_GG_21146_c1_g1_i4,blat.proc3825166.chain_3180,blat.proc3825166.chain_3181	7
scaffold_14	alt_acceptor	871673	871674	+	asmbl_11775,asmbl_11777	none	STRG.16759.1,blat.proc3825172.chain_1525	2	STRG.16759.2,STRG.16759.3	2
scaffold_1	starts_in_intron	8754389	8754389	-	asmbl_489,asmbl_492	none	STRG.579.1,blat.proc3825148.chain_599,blat.proc3825148.chain_600	3	STRG.579.2,STRG.579.4,blat.proc3825148.chain_602,blat.proc3825148.chain_604	4
scaffold_27	alternate_exon	973551	973720	+	asmbl_35971	none	Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1717	2	STRG.28595.4	1
scaffold_4	alt_donor	6602063	6602064	+	asmbl_41414,asmbl_41416,asmbl_41418	none	STRG.4521.1,STRG.4521.2,blat.proc3825166.chain_971,blat.proc3825166.chain_973	4	blat.proc3825166.chain_972	1
scaffold_14	skipped_exon	11663691	11664754	-	asmbl_13511,asmbl_13512,asmbl_13513	none	STRG.17511.1,STRG.17511.2,blat.proc3825156.chain_2307,blat.proc3825156.chain_2308,blat.proc3825156.chain_2309	5	blat.proc3825156.chain_2310	1
scaffold_25	starts_in_intron	9165777	9165777	+	asmbl_33789	none	Trinity_GG_32620_c0_g1_i4,blat.proc3825178.chain_838	2	STRG.27724.2,blat.proc3825178.chain_839	2
scaffold_16	starts_in_intron	2347739	2347739	+	asmbl_16127	none	Trinity_GG_27803_c0_g1_i1,blat.proc3825174.chain_46	2	STRG.19130.1,blat.proc3825174.chain_45	2
scaffold_28	ends_in_intron	3243150	3243150	+	asmbl_37464	none	Trinity_GG_33656_c0_g1_i4	1	STRG.29544.1,STRG.29544.2	2
scaffold_6	alt_acceptor	7172548	7172549	+	asmbl_47052,asmbl_47053,asmbl_47055	none	STRG.7628.1,STRG.7628.2,STRG.7628.4	3	blat.proc3825168.chain_83,blat.proc3825168.chain_84	2
scaffold_15	alternate_exon	12642560	12644069	-	asmbl_14594	none	STRG.18720.1,blat.proc3825156.chain_3565	2	STRG.18720.2	1
scaffold_13	alt_donor	7443101	7443102	+	asmbl_11049	none	STRG.16040.2,blat.proc3825172.chain_752	2	STRG.16040.1,blat.proc3825172.chain_751	2
scaffold_4	starts_in_intron	8854493	8854493	+	asmbl_41589	none	blat.proc3825166.chain_1164	1	STRG.4706.1,blat.proc3825166.chain_1161,blat.proc3825166.chain_1162	3
scaffold_15	retained_intron	15409993	15410182	+	asmbl_15771	none	STRG.18930.4,blat.proc3825172.chain_3591	2	STRG.18930.2,STRG.18930.7,blat.proc3825172.chain_3590	3
scaffold_9	alternate_exon	3675428	3676946	-	asmbl_54920	none	STRG.10993.4,Trinity_GG_6077_c0_g4_i1,blat.proc3825152.chain_3221	3	Trinity_GG_6077_c0_g2_i2	1
scaffold_4	alternate_exon	16353177	16353481	+	asmbl_41969	none	STRG.5212.2	1	STRG.5212.1,blat.proc3825166.chain_1586	2
scaffold_13	ends_in_intron	3247075	3247075	+	asmbl_10673	none	blat.proc3825172.chain_407	1	STRG.15630.1,STRG.15630.2,blat.proc3825172.chain_406	3
scaffold_12	ends_in_intron	5565431	5565431	-	asmbl_8507	none	blat.proc3825154.chain_3201	1	STRG.14712.1,STRG.14712.2,blat.proc3825154.chain_3199,blat.proc3825154.chain_3200	4
scaffold_25	starts_in_intron	9042917	9042917	-	asmbl_34477	none	blat.proc3825162.chain_1109	1	STRG.27715.1,STRG.27715.2,STRG.27715.3,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106,blat.proc3825162.chain_1107,blat.proc3825162.chain_1110	7
scaffold_5	alt_acceptor	7890846	7890847	+	asmbl_45519	none	STRG.6168.1,blat.proc3825166.chain_2303	2	STRG.6168.2	1
scaffold_17	starts_in_intron	12378289	12378289	-	asmbl_18330	none	blat.proc3825158.chain_1713	1	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4,blat.proc3825158.chain_1711	5
scaffold_13	retained_exon	5920103	5920192	-	asmbl_9748	none	STRG.15907.1,Trinity_GG_8926_c0_g1_i2,blat.proc3825156.chain_753	3	STRG.15907.2,Trinity_GG_8926_c0_g1_i3,blat.proc3825156.chain_751	3
scaffold_12	skipped_exon	10187619	10188527	-	asmbl_8731,asmbl_8735,asmbl_8738	none	STRG.14994.1,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516	4	STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3520	3
scaffold_14	spliced_intron	8213726	8214121	-	asmbl_13251,asmbl_13252,asmbl_13256,asmbl_13257,asmbl_13258,asmbl_13259	none	STRG.17234.1,STRG.17234.2,STRG.17234.3,STRG.17234.4,STRG.17234.5,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	8	blat.proc3825156.chain_2055,blat.proc3825156.chain_2056	2
scaffold_2	starts_in_intron	6512905	6512905	-	asmbl_23209	none	blat.proc3825148.chain_2017	1	STRG.2013.1,STRG.2013.2,STRG.2013.3,STRG.2013.4,Trinity_GG_1121_c0_g1_i2,blat.proc3825148.chain_2016,blat.proc3825148.chain_2018	7
scaffold_16	alternate_exon	12642265	12642776	-	asmbl_17397	none	STRG.19758.2,blat.proc3825158.chain_800	2	STRG.19758.1,blat.proc3825158.chain_798	2
scaffold_25	spliced_intron	1906533	1906576	-	asmbl_34056	none	STRG.27201.3	1	STRG.27201.4	1
scaffold_22	alt_donor	4287916	4287917	-	asmbl_29244	none	blat.proc3825160.chain_2087	1	STRG.24854.3	1
scaffold_6	ends_in_intron	5929072	5929072	+	asmbl_46983	none	blat.proc3825166.chain_3727	1	STRG.7543.1,blat.proc3825166.chain_3725,blat.proc3825166.chain_3726	3
scaffold_8	spliced_intron	10059557	10059771	-	asmbl_52095,asmbl_52096	none	STRG.10265.1,STRG.10265.2,blat.proc3825152.chain_2447,blat.proc3825152.chain_2448	4	Trinity_GG_5681_c0_g1_i1,blat.proc3825152.chain_2446	2
scaffold_4	spliced_intron	4692423	4692526	+	asmbl_41296,asmbl_41298,asmbl_41299,asmbl_41300,asmbl_41301,asmbl_41302,asmbl_41303	none	STRG.4379.1,blat.proc3825166.chain_814,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_818,blat.proc3825166.chain_819,blat.proc3825166.chain_820	7	blat.proc3825166.chain_813	1
scaffold_3	retained_intron	7919332	7919535	-	asmbl_39001	none	blat.proc3825148.chain_3254	1	STRG.3377.1,STRG.3377.2,STRG.3377.3,STRG.3377.4,blat.proc3825148.chain_3255	5
scaffold_4	alt_donor	4124594	4124595	-	asmbl_42501	none	STRG.4324.2,blat.proc3825150.chain_564	2	STRG.4324.1,blat.proc3825150.chain_565	2
scaffold_16	starts_in_intron	9032700	9032700	+	asmbl_16457	none	Trinity_GG_28002_c0_g1_i3,blat.proc3825174.chain_441	2	STRG.19515.1,STRG.19515.2,STRG.19515.3,STRG.19515.4,blat.proc3825174.chain_440,blat.proc3825174.chain_442,blat.proc3825174.chain_443	7
scaffold_15	spliced_intron	15409993	15410185	+	asmbl_15766,asmbl_15774	none	STRG.18930.5,STRG.18930.9,blat.proc3825172.chain_3587	3	STRG.18930.4,blat.proc3825172.chain_3591	2
scaffold_6	spliced_intron	9091532	9091638	-	asmbl_48607	none	STRG.7786.1,blat.proc3825152.chain_157	2	STRG.7786.2,blat.proc3825152.chain_156	2
scaffold_20	alt_acceptor	10786020	10786021	+	asmbl_26993	none	STRG.23606.1,Trinity_GG_30378_c0_g1_i4,blat.proc3825176.chain_799	3	STRG.23606.2,blat.proc3825176.chain_798	2
scaffold_17	alt_donor	2765682	2765683	-	asmbl_17783	none	STRG.20078.1,blat.proc3825158.chain_1111	2	STRG.20078.2,blat.proc3825158.chain_1112	2
scaffold_13	skipped_exon	3613014	3614593	-	asmbl_9557	none	STRG.15680.2,blat.proc3825156.chain_564	2	blat.proc3825156.chain_566	1
scaffold_8	alternate_exon	17303307	17314445	-	asmbl_52443,asmbl_52444	none	STRG.10653.1,STRG.10653.2,STRG.10653.4,blat.proc3825152.chain_2900,blat.proc3825152.chain_2902	5	STRG.10653.3,blat.proc3825152.chain_2898,blat.proc3825152.chain_2901	3
scaffold_5	skipped_exon	8565762	8567600	+	asmbl_45555	none	STRG.6199.2	1	STRG.6199.1,blat.proc3825166.chain_2300	2
scaffold_10	spliced_intron	8894400	8894642	-	asmbl_4621,asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4626,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632,asmbl_4633	none	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	13	blat.proc3825154.chain_1263	1
scaffold_24	alternate_exon	3349201	3349325	-	asmbl_32821	none	STRG.26535.2,STRG.26535.4,blat.proc3825160.chain_3647	3	STRG.26535.3	1
scaffold_6	alt_donor	2758919	2758920	+	asmbl_46771	none	STRG.7272.1	1	STRG.7272.5	1
scaffold_25	alternate_exon	5784978	5785292	+	asmbl_33578	none	Trinity_GG_32454_c0_g1_i5,blat.proc3825178.chain_586	2	STRG.27472.1,STRG.27472.2,STRG.27472.3,blat.proc3825178.chain_583,blat.proc3825178.chain_587	5
scaffold_1	alt_donor	11098565	11098566	+	asmbl_2061	none	STRG.731.2	1	STRG.731.1,blat.proc3825164.chain_868	2
scaffold_9	spliced_intron	16560431	16561320	-	asmbl_55582,asmbl_55583	none	STRG.11806.4,STRG.11806.5	2	STRG.11806.3,STRG.11806.6,Trinity_GG_6524_c2_g1_i1,blat.proc3825154.chain_278	4
scaffold_16	starts_in_intron	7517957	7517957	+	asmbl_16341,asmbl_16344	none	STRG.19405.3,Trinity_GG_27948_c3_g1_i1,blat.proc3825174.chain_342	3	STRG.19405.1,Trinity_GG_27948_c3_g1_i2,blat.proc3825174.chain_341	3
scaffold_7	alternate_exon	2475259	2484085	+	asmbl_49645	none	STRG.8684.2,blat.proc3825168.chain_1198	2	blat.proc3825168.chain_1195	1
scaffold_10	skipped_exon	13120565	13121189	+	asmbl_3582	none	STRG.12919.1	1	STRG.12919.2,Trinity_GG_24438_c1_g1_i1,blat.proc3825170.chain_1538,blat.proc3825170.chain_1539	4
scaffold_12	retained_intron	3400110	3400288	+	asmbl_7561	none	blat.proc3825170.chain_3115	1	blat.proc3825170.chain_3114	1
scaffold_16	spliced_intron	672773	672865	+	asmbl_16032,asmbl_16036	none	STRG.19045.2,STRG.19045.3,Trinity_GG_27750_c0_g1_i5,blat.proc3825172.chain_3698,blat.proc3825172.chain_3701	5	STRG.19045.1,STRG.19045.4,Trinity_GG_27750_c0_g1_i2,Trinity_GG_27750_c0_g1_i3,blat.proc3825172.chain_3697,blat.proc3825172.chain_3699	6
scaffold_11	ends_in_intron	10265872	10265872	-	asmbl_6989,asmbl_6990	none	STRG.14036.2,STRG.14036.3,blat.proc3825154.chain_2562,blat.proc3825154.chain_2563	4	STRG.14036.1,blat.proc3825154.chain_2564,blat.proc3825154.chain_2565	3
scaffold_12	retained_intron	4788054	4789011	-	asmbl_8446,asmbl_8447	none	STRG.14660.3,STRG.14660.6,Trinity_GG_8171_c2_g1_i1,blat.proc3825154.chain_3155	4	STRG.14660.4,blat.proc3825154.chain_3147,blat.proc3825154.chain_3153	3
scaffold_6	alt_donor	14153040	14153041	-	asmbl_48988	none	STRG.8179.1	1	STRG.8179.2	1
scaffold_15	retained_intron	13972358	13972548	+	asmbl_15661	none	Trinity_GG_27636_c0_g1_i1,blat.proc3825172.chain_3458	2	STRG.18831.1,Trinity_GG_27636_c0_g1_i2,blat.proc3825172.chain_3459,blat.proc3825172.chain_3460	4
scaffold_10	skipped_exon	11595100	11596812	+	asmbl_3475	none	STRG.12815.2	1	STRG.12815.1,STRG.12815.3	2
scaffold_3	ends_in_intron	1170072	1170072	+	asmbl_39833	none	blat.proc3825164.chain_3122	1	STRG.2938.1,blat.proc3825164.chain_3123	2
scaffold_14	spliced_intron	15345450	15346877	-	asmbl_13712	none	STRG.17765.3,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2610	3	STRG.17765.2	1
scaffold_4	spliced_intron	3237335	3237419	-	asmbl_42423,asmbl_42426	none	STRG.4249.1,STRG.4249.2,blat.proc3825150.chain_493	3	Trinity_GG_2372_c0_g1_i5,Trinity_GG_2372_c0_g1_i7,blat.proc3825150.chain_492,blat.proc3825150.chain_494	4
scaffold_1	retained_intron	5729304	5729775	+	asmbl_1763,asmbl_1764	none	STRG.387.1,STRG.387.2,blat.proc3825164.chain_503,blat.proc3825164.chain_504	4	blat.proc3825164.chain_502	1
scaffold_8	alt_acceptor	1127412	1127413	+	asmbl_52681	none	STRG.9752.3	1	STRG.9752.1	1
scaffold_6	starts_in_intron	16051306	16051306	+	asmbl_47686	none	Trinity_GG_21889_c0_g1_i2,blat.proc3825168.chain_788	2	STRG.8345.1,blat.proc3825168.chain_787	2
scaffold_12	ends_in_intron	7276338	7276338	-	asmbl_8567	none	Trinity_GG_8260_c0_g1_i4,blat.proc3825154.chain_3310	2	STRG.14801.1,STRG.14801.2,Trinity_GG_8260_c0_g1_i1,Trinity_GG_8260_c0_g1_i2,blat.proc3825154.chain_3307,blat.proc3825154.chain_3308	6
scaffold_3	retained_exon	14479687	14479761	+	asmbl_40528	none	STRG.3789.1,blat.proc3825166.chain_286	2	STRG.3789.2,blat.proc3825166.chain_289	2
scaffold_6	alternate_exon	8468067	8468646	-	asmbl_48554	none	STRG.7726.1,blat.proc3825152.chain_81	2	STRG.7726.2,blat.proc3825152.chain_80	2
scaffold_52	spliced_intron	1701	1786	-	asmbl_46521,asmbl_46522	none	STRG.30060.1,STRG.30060.2,blat.proc3825162.chain_3235,blat.proc3825162.chain_3236	4	Trinity_GG_16867_c0_g1_i1,blat.proc3825162.chain_3233	2
scaffold_4	alt_acceptor	19348492	19348493	-	asmbl_43431	none	STRG.5517.2	1	STRG.5517.1	1
scaffold_21	alt_donor	257644	257645	-	asmbl_27282,asmbl_27284,asmbl_27287,asmbl_27288	none	STRG.23725.2,STRG.23725.5,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_804,blat.proc3825160.chain_811,blat.proc3825160.chain_813	6	STRG.23725.4,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_812	9
scaffold_17	alt_acceptor	6801768	6801769	+	asmbl_18872,asmbl_18873,asmbl_18874,asmbl_18876	none	STRG.20333.1,STRG.20333.2,STRG.20333.3,blat.proc3825174.chain_1165,blat.proc3825174.chain_1166,blat.proc3825174.chain_1167	6	STRG.20333.4	1
scaffold_12	retained_intron	15694711	15694787	+	asmbl_8135	none	blat.proc3825172.chain_94	1	STRG.15366.1,blat.proc3825172.chain_95	2
scaffold_14	alt_acceptor	8251788	8251789	-	asmbl_13270	none	STRG.17245.1	1	STRG.17245.2,Trinity_GG_9632_c0_g1_i1,blat.proc3825156.chain_1993	3
scaffold_8	skipped_exon	9867463	9868250	+	asmbl_53117,asmbl_53118,asmbl_53121	none	STRG.10233.2,blat.proc3825168.chain_2817,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	4	blat.proc3825168.chain_2818,blat.proc3825168.chain_2819	2
scaffold_4	spliced_intron	13723093	13723242	-	asmbl_43002	none	blat.proc3825150.chain_1108	1	STRG.4994.1,blat.proc3825150.chain_1109	2
scaffold_26	ends_in_intron	5791922	5791922	-	asmbl_35625	none	blat.proc3825162.chain_1505	1	STRG.28282.1,STRG.28282.2	2
scaffold_1	starts_in_intron	3680319	3680319	+	asmbl_1630	none	blat.proc3825164.chain_371	1	STRG.242.2,STRG.242.3,blat.proc3825164.chain_366,blat.proc3825164.chain_367,blat.proc3825164.chain_368	5
scaffold_23	alt_acceptor	361674	361675	-	asmbl_30590,asmbl_30592,asmbl_30594,asmbl_30595,asmbl_30597,asmbl_30598,asmbl_30600	none	STRG.25564.1,STRG.25564.2,STRG.25564.4,Trinity_GG_14303_c0_g1_i3,Trinity_GG_14303_c0_g1_i4,blat.proc3825160.chain_2720,blat.proc3825160.chain_2721,blat.proc3825160.chain_2722,blat.proc3825160.chain_2723,blat.proc3825160.chain_2726,blat.proc3825160.chain_2727	11	STRG.25564.3,Trinity_GG_14303_c0_g1_i9,blat.proc3825160.chain_2724,blat.proc3825160.chain_2725,blat.proc3825160.chain_2728	5
scaffold_6	ends_in_intron	16603828	16603828	+	asmbl_47706	none	blat.proc3825168.chain_829	1	STRG.8386.1,STRG.8386.2,STRG.8386.3,blat.proc3825168.chain_828,blat.proc3825168.chain_830	5
scaffold_8	starts_in_intron	12323522	12323522	-	asmbl_52190,asmbl_52193	none	STRG.10413.2,blat.proc3825152.chain_2632,blat.proc3825152.chain_2635	3	STRG.10413.1,STRG.10413.3,blat.proc3825152.chain_2631,blat.proc3825152.chain_2633,blat.proc3825152.chain_2636	5
scaffold_3	retained_intron	14317546	14317663	-	asmbl_39358	none	blat.proc3825148.chain_3613	1	STRG.3772.1,STRG.3772.2,blat.proc3825148.chain_3614,blat.proc3825148.chain_3615	4
scaffold_1	alt_acceptor	9897735	9897736	-	asmbl_563,asmbl_564	none	STRG.664.1,blat.proc3825148.chain_620	2	STRG.664.2,blat.proc3825148.chain_621	2
scaffold_28	starts_in_intron	7543281	7543281	+	asmbl_37697	none	blat.proc3825178.chain_2994	1	STRG.29835.1	1
scaffold_1	alternate_exon	11708171	11708536	+	asmbl_2136	none	blat.proc3825164.chain_938	1	STRG.785.1,Trinity_GG_17797_c0_g1_i2,blat.proc3825164.chain_936	3
scaffold_4	alt_donor	1332445	1332446	-	asmbl_42367	none	STRG.4173.3	1	STRG.4173.2,STRG.4173.4,blat.proc3825150.chain_392,blat.proc3825150.chain_393,blat.proc3825150.chain_394,blat.proc3825150.chain_395	6
scaffold_16	starts_in_intron	14655594	14655594	-	asmbl_17485	none	Trinity_GG_11145_c0_g1_i2,blat.proc3825158.chain_904	2	STRG.19863.1,STRG.19863.2,blat.proc3825158.chain_905,blat.proc3825158.chain_906	4
scaffold_7	alt_acceptor	10710436	10710437	+	asmbl_50142	none	STRG.9249.2	1	STRG.9249.1,blat.proc3825168.chain_1733	2
scaffold_18	starts_in_intron	7868239	7868239	+	asmbl_20805	none	blat.proc3825174.chain_2457	1	STRG.21488.1,STRG.21488.2,STRG.21488.3,STRG.21488.5,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2452,blat.proc3825174.chain_2456,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	12
scaffold_22	retained_intron	1706545	1706810	-	asmbl_29150	none	blat.proc3825160.chain_1960	1	STRG.24761.1,STRG.24761.2,Trinity_GG_13841_c0_g1_i1,Trinity_GG_13841_c0_g1_i3,blat.proc3825160.chain_1958,blat.proc3825160.chain_1959	6
scaffold_15	starts_in_intron	13635171	13635171	-	asmbl_14646	none	blat.proc3825156.chain_3634	1	STRG.18791.1	1
scaffold_10	retained_exon	11970269	11971084	+	asmbl_3508,asmbl_3510	none	STRG.12838.1,STRG.12838.6	2	STRG.12838.5	1
scaffold_5	retained_intron	15041706	15041804	-	asmbl_44641	none	Trinity_GG_3732_c0_g3_i1,blat.proc3825150.chain_2833	2	STRG.6698.1,STRG.6698.2,STRG.6698.3,blat.proc3825150.chain_2828,blat.proc3825150.chain_2829,blat.proc3825150.chain_2834	6
scaffold_4	alt_acceptor	14632327	14632328	-	asmbl_43057	none	STRG.5089.2	1	STRG.5089.1,blat.proc3825150.chain_1215	2
scaffold_27	alt_acceptor	7522243	7522244	+	asmbl_36465,asmbl_36467	none	STRG.29117.1,STRG.29117.4	2	STRG.29117.2,STRG.29117.3,blat.proc3825178.chain_2324	3
scaffold_11	retained_intron	1983670	1984066	-	asmbl_6463	none	Trinity_GG_7490_c0_g1_i5,blat.proc3825154.chain_1943,blat.proc3825154.chain_1944	3	STRG.13360.1,blat.proc3825154.chain_1941	2
scaffold_15	alternate_exon	12391006	12391442	-	asmbl_14571	none	STRG.18695.1,blat.proc3825156.chain_3520	2	STRG.18695.2	1
scaffold_28	ends_in_intron	8499288	8499288	-	asmbl_38473	none	blat.proc3825162.chain_3092	1	STRG.29927.1,blat.proc3825162.chain_3093	2
scaffold_3	starts_in_intron	3097318	3097318	-	asmbl_38753	none	blat.proc3825148.chain_2924	1	STRG.3064.2,blat.proc3825148.chain_2923	2
scaffold_8	ends_in_intron	8970319	8970319	-	asmbl_51984	none	Trinity_GG_5668_c0_g2_i1,blat.proc3825152.chain_2426	2	STRG.10148.1,blat.proc3825152.chain_2424,blat.proc3825152.chain_2425	3
scaffold_27	starts_in_intron	4508797	4508797	+	asmbl_36298	none	blat.proc3825178.chain_2104	1	STRG.28904.1,STRG.28904.2,Trinity_GG_33313_c0_g1_i4,blat.proc3825178.chain_2103,blat.proc3825178.chain_2105	5
scaffold_19	alternate_exon	3670631	3671463	-	asmbl_22118	none	Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2894	2	STRG.22046.2,Trinity_GG_12309_c0_g1_i3,blat.proc3825158.chain_2897	3
scaffold_13	alt_donor	4375749	4375750	+	asmbl_10786,asmbl_10787	none	STRG.15764.3,STRG.15764.4	2	STRG.15764.1,STRG.15764.2	2
scaffold_4	alt_acceptor	8081256	8081257	+	asmbl_41537	none	STRG.4627.2	1	STRG.4627.1,blat.proc3825166.chain_1102	2
scaffold_2	alt_donor	862195	862196	+	asmbl_24116	none	STRG.1562.3	1	STRG.1562.1,STRG.1562.2,blat.proc3825164.chain_1700	3
scaffold_27	spliced_intron	4186686	4186765	+	asmbl_36259	none	STRG.28877.1,blat.proc3825178.chain_2032	2	blat.proc3825178.chain_2031	1
scaffold_5	starts_in_intron	16585497	16585497	-	asmbl_44757	none	blat.proc3825150.chain_3026	1	STRG.6850.1,STRG.6850.2,blat.proc3825150.chain_3027,blat.proc3825150.chain_3028	4
scaffold_13	spliced_intron	4239686	4240251	-	asmbl_9612,asmbl_9617	none	STRG.15752.2,blat.proc3825156.chain_592	2	STRG.15752.1,STRG.15752.3,STRG.15752.4,blat.proc3825156.chain_589,blat.proc3825156.chain_590	5
scaffold_7	alt_donor	12386894	12386895	-	asmbl_51206,asmbl_51207,asmbl_51209,asmbl_51210	none	blat.proc3825152.chain_1655,blat.proc3825152.chain_1657,blat.proc3825152.chain_1660,blat.proc3825152.chain_1661	4	STRG.9338.1,blat.proc3825152.chain_1659	2
scaffold_2	starts_in_intron	14554506	14554506	+	asmbl_24951	none	Trinity_GG_18675_c4_g1_i1,blat.proc3825164.chain_2669	2	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2661,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	12
scaffold_16	retained_intron	5395173	5395337	+	asmbl_16212	none	Trinity_GG_27867_c0_g1_i1,blat.proc3825174.chain_182	2	STRG.19288.1,Trinity_GG_27867_c0_g1_i3,blat.proc3825174.chain_180,blat.proc3825174.chain_181,blat.proc3825174.chain_183	5
scaffold_13	alternate_exon	904335	912224	-	asmbl_9382	none	blat.proc3825156.chain_268	1	STRG.15470.2,Trinity_GG_8651_c0_g1_i6,blat.proc3825156.chain_270	3
scaffold_18	alt_acceptor	4615525	4615526	+	asmbl_20538	none	STRG.21254.2	1	STRG.21254.1,blat.proc3825174.chain_2210,blat.proc3825174.chain_2211	3
scaffold_26	alternate_exon	1322067	1322076	-	asmbl_35402	none	blat.proc3825162.chain_1237	1	STRG.27913.1,blat.proc3825162.chain_1239	2
scaffold_10	spliced_intron	12053237	12053342	+	asmbl_3523	none	STRG.12840.1,Trinity_GG_24387_c0_g1_i1	2	STRG.12840.2,Trinity_GG_24387_c0_g1_i2,blat.proc3825170.chain_1441	3
scaffold_16	retained_exon	12022267	12022318	-	asmbl_17383	none	STRG.19729.2,blat.proc3825158.chain_788	2	STRG.19729.1,STRG.19729.3,blat.proc3825158.chain_787	3
scaffold_13	starts_in_intron	12003241	12003241	+	asmbl_11319	none	Trinity_GG_26301_c1_g1_i1,blat.proc3825172.chain_1144	2	STRG.16338.1,STRG.16338.2,blat.proc3825172.chain_1140,blat.proc3825172.chain_1143	4
scaffold_13	alt_acceptor	3705377	3705378	-	asmbl_9562,asmbl_9565	none	STRG.15688.1,STRG.15688.3	2	STRG.15688.4	1
scaffold_13	alt_acceptor	16250638	16250639	+	asmbl_11567	none	STRG.16679.1,blat.proc3825172.chain_1459	2	STRG.16679.2,blat.proc3825172.chain_1460,blat.proc3825172.chain_1461	3
scaffold_26	alternate_exon	9841947	9842320	-	asmbl_35794	none	STRG.28545.3,Trinity_GG_15923_c0_g1_i3,blat.proc3825162.chain_1674	3	STRG.28545.2,Trinity_GG_15923_c0_g1_i4,blat.proc3825162.chain_1673	3
scaffold_4	retained_exon	16540328	16540450	-	asmbl_43189	none	STRG.5230.1,blat.proc3825150.chain_1419	2	STRG.5230.2,blat.proc3825150.chain_1418	2
scaffold_1	alt_acceptor	16717452	16717453	-	asmbl_1011,asmbl_1012	none	STRG.1177.2,STRG.1177.4	2	STRG.1177.1,STRG.1177.3,Trinity_GG_569_c0_g1_i3,blat.proc3825148.chain_1082,blat.proc3825148.chain_1083,blat.proc3825148.chain_1084	6
scaffold_21	alt_acceptor	1151164	1151165	+	asmbl_28328	none	STRG.23790.2,Trinity_GG_30494_c0_g1_i2,blat.proc3825176.chain_1008	3	STRG.23790.3	1
scaffold_14	alt_donor	10019031	10019032	-	asmbl_13406	none	STRG.17375.4,blat.proc3825156.chain_2153	2	STRG.17375.3,blat.proc3825156.chain_2151	2
scaffold_23	alternate_exon	2220592	2222393	-	asmbl_30713	none	STRG.25698.5	1	STRG.25698.6	1
scaffold_23	starts_in_intron	4090755	4090755	+	asmbl_31479	none	Trinity_GG_31556_c0_g1_i1,blat.proc3825176.chain_2755	2	STRG.25819.1,STRG.25819.2,blat.proc3825176.chain_2754	3
scaffold_16	alt_acceptor	146816	146817	-	asmbl_16833,asmbl_16840,asmbl_16841	none	Trinity_GG_10685_c0_g1_i3,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i7,blat.proc3825158.chain_147,blat.proc3825158.chain_148	5	STRG.19010.1,Trinity_GG_10685_c0_g1_i8	2
scaffold_17	starts_in_intron	12200412	12200412	+	asmbl_19281	none	blat.proc3825174.chain_1663	1	STRG.20759.1,STRG.20759.3,blat.proc3825174.chain_1661,blat.proc3825174.chain_1662,blat.proc3825174.chain_1664	5
scaffold_4	spliced_intron	5651747	5651850	-	asmbl_42616,asmbl_42618,asmbl_42619,asmbl_42620,asmbl_42621,asmbl_42624,asmbl_42625,asmbl_42627,asmbl_42628	none	STRG.4472.1,STRG.4472.2,STRG.4472.3,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_663,blat.proc3825150.chain_664,blat.proc3825150.chain_665,blat.proc3825150.chain_666,blat.proc3825150.chain_667,blat.proc3825150.chain_668	12	blat.proc3825150.chain_658	1
scaffold_24	alt_acceptor	10269520	10269521	+	asmbl_32549	none	STRG.26984.2,Trinity_GG_32226_c0_g1_i2,blat.proc3825178.chain_192	3	STRG.26984.1,Trinity_GG_32226_c0_g1_i1,blat.proc3825178.chain_193	3
scaffold_5	retained_exon	11993058	11993127	-	asmbl_44431	none	STRG.6453.5	1	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3
scaffold_17	alt_acceptor	3295294	3295295	+	asmbl_18716	none	STRG.20112.2	1	STRG.20112.1,Trinity_GG_28327_c0_g1_i1,blat.proc3825174.chain_984	3
scaffold_6	starts_in_intron	17871767	17871767	-	asmbl_49207	none	STRG.8476.1	1	STRG.8476.2	1
scaffold_12	starts_in_intron	6602873	6602873	+	asmbl_7706	none	blat.proc3825170.chain_3292	1	STRG.14762.1	1
scaffold_14	alt_acceptor	7259015	7259016	-	asmbl_13181	none	STRG.17163.2	1	STRG.17163.1	1
scaffold_2	retained_intron	15894798	15894963	+	asmbl_25083	none	STRG.2534.1,Trinity_GG_18750_c0_g1_i1,blat.proc3825164.chain_2823	3	STRG.2534.2	1
scaffold_4	ends_in_intron	18995299	18995299	+	asmbl_42117	none	blat.proc3825166.chain_1771	1	STRG.5476.1	1
scaffold_22	alternate_exon	6130242	6131013	+	asmbl_30097,asmbl_30102,asmbl_30103	none	STRG.24968.1,blat.proc3825176.chain_2118	2	STRG.24968.7,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2124	3
scaffold_19	starts_in_intron	6687652	6687652	+	asmbl_21433	none	STRG.22189.2,blat.proc3825174.chain_3125	2	STRG.22189.1,Trinity_GG_29526_c0_g1_i1,Trinity_GG_29526_c0_g1_i3,blat.proc3825174.chain_3124,blat.proc3825174.chain_3126,blat.proc3825174.chain_3127	6
scaffold_22	retained_intron	322655	323437	+	asmbl_29840	none	STRG.24686.2	1	STRG.24686.1,blat.proc3825176.chain_1815,blat.proc3825176.chain_1819	3
scaffold_11	ends_in_intron	7652809	7652809	+	asmbl_5676	none	Trinity_GG_24882_c0_g1_i2,blat.proc3825170.chain_2281	2	STRG.13766.1,Trinity_GG_24882_c0_g1_i1,blat.proc3825170.chain_2280	3
scaffold_6	spliced_intron	17881666	17881817	-	asmbl_49210,asmbl_49213,asmbl_49214,asmbl_49215	none	STRG.8481.1,STRG.8481.3,blat.proc3825152.chain_878,blat.proc3825152.chain_879,blat.proc3825152.chain_880	5	Trinity_GG_4813_c0_g1_i4,blat.proc3825152.chain_876	2
scaffold_15	starts_in_intron	13042611	13042611	+	asmbl_15617	none	Trinity_GG_27606_c0_g2_i4,blat.proc3825172.chain_3408	2	STRG.18741.1,Trinity_GG_27606_c0_g2_i2,blat.proc3825172.chain_3406,blat.proc3825172.chain_3409	4
scaffold_20	alt_donor	6281280	6281281	+	asmbl_26656	none	STRG.23227.2	1	STRG.23227.1	1
scaffold_19	alternate_exon	11724574	11724743	-	asmbl_22433	none	blat.proc3825158.chain_3272	1	STRG.22502.2,blat.proc3825158.chain_3271	2
scaffold_7	alt_acceptor	5224677	5224678	+	asmbl_49795	none	STRG.8861.2	1	STRG.8861.1,blat.proc3825168.chain_1313	2
scaffold_13	alt_donor	15672285	15672286	+	asmbl_11525,asmbl_11526,asmbl_11527	none	STRG.16612.1,STRG.16612.2,STRG.16612.3,blat.proc3825172.chain_1403	4	STRG.16612.4,STRG.16612.5,STRG.16612.6	3
scaffold_2	retained_intron	15453799	15453902	+	asmbl_25041,asmbl_25045	none	blat.proc3825164.chain_2805,blat.proc3825164.chain_2809	2	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811,blat.proc3825164.chain_2812	9
scaffold_7	ends_in_intron	737005	737005	-	asmbl_50703	none	STRG.8612.2,Trinity_GG_4897_c0_g1_i2,blat.proc3825152.chain_1027	3	STRG.8612.1	1
scaffold_736	spliced_intron	2408	2427	+	asmbl_51638	none	STRG.30451.1	1	Trinity_GG_34150_c0_g1_i1	1
scaffold_16	spliced_intron	10441689	10441843	+	asmbl_16530	none	STRG.19615.1,Trinity_GG_28034_c0_g1_i1,Trinity_GG_28034_c0_g1_i2,blat.proc3825174.chain_498	4	Trinity_GG_28034_c0_g1_i3,blat.proc3825174.chain_499	2
scaffold_10	alt_donor	1621037	1621038	+	asmbl_2949,asmbl_2950,asmbl_2951,asmbl_2953,asmbl_2955	none	STRG.12026.1,STRG.12026.2,STRG.12026.3,STRG.12026.5,STRG.12026.6,Trinity_GG_23966_c0_g1_i3,Trinity_GG_23966_c0_g1_i4,Trinity_GG_23966_c0_g1_i7,Trinity_GG_23966_c0_g1_i8,Trinity_GG_23966_c0_g1_i9,blat.proc3825170.chain_713,blat.proc3825170.chain_714,blat.proc3825170.chain_715,blat.proc3825170.chain_716,blat.proc3825170.chain_717	15	STRG.12026.4	1
scaffold_9	skipped_exon	643673	645133	+	asmbl_53781	none	STRG.10793.1,blat.proc3825168.chain_3345	2	STRG.10793.2,STRG.10793.3,STRG.10793.4	3
scaffold_7	alternate_exon	1230858	1233709	+	asmbl_49588,asmbl_49589	none	Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c4_g1_i1,blat.proc3825168.chain_1079,blat.proc3825168.chain_1084	4	blat.proc3825168.chain_1068	1
scaffold_5	alt_donor	18993044	18993045	+	asmbl_46302,asmbl_46303	none	STRG.7016.2,Trinity_GG_21117_c1_g1_i1,blat.proc3825166.chain_3123	3	STRG.7016.1,Trinity_GG_21117_c1_g1_i2,blat.proc3825166.chain_3122	3
scaffold_26	retained_intron	9774454	9775593	+	asmbl_35256,asmbl_35257,asmbl_35258,asmbl_35259,asmbl_35260,asmbl_35261,asmbl_35262,asmbl_35263,asmbl_35265	none	STRG.28516.3,STRG.28516.4,STRG.28516.5,STRG.28516.7,Trinity_GG_33091_c0_g1_i3,blat.proc3825178.chain_1649,blat.proc3825178.chain_1653	7	STRG.28516.1,STRG.28516.2,STRG.28516.6	3
scaffold_21	starts_in_intron	4971372	4971372	+	asmbl_28549	none	Trinity_GG_30638_c1_g1_i1,blat.proc3825176.chain_1259	2	STRG.24041.1,STRG.24041.2,blat.proc3825176.chain_1258	3
scaffold_2	spliced_intron	14462273	14462391	-	asmbl_23603	none	STRG.2446.1,blat.proc3825148.chain_2422	2	blat.proc3825148.chain_2421	1
scaffold_16	spliced_intron	10449967	10450337	+	asmbl_16534,asmbl_16535,asmbl_16536,asmbl_16538,asmbl_16539	none	STRG.19614.1,STRG.19614.2,STRG.19614.3,STRG.19614.4,Trinity_GG_28027_c0_g1_i1,blat.proc3825174.chain_484,blat.proc3825174.chain_486,blat.proc3825174.chain_488,blat.proc3825174.chain_489	9	Trinity_GG_28027_c0_g1_i3,blat.proc3825174.chain_485	2
scaffold_4	retained_exon	12727979	12728062	+	asmbl_41743	none	STRG.4914.1,blat.proc3825166.chain_1316	2	STRG.4914.2,blat.proc3825166.chain_1317	2
scaffold_10	spliced_intron	8319997	8320745	-	asmbl_4573	none	STRG.12589.1	1	STRG.12589.2	1
scaffold_26	ends_in_intron	2820373	2820373	-	asmbl_35449	none	Trinity_GG_15681_c0_g2_i1,blat.proc3825162.chain_1277	2	STRG.27976.1,blat.proc3825162.chain_1276	2
scaffold_5	starts_in_intron	12914341	12914341	-	asmbl_44495	none	blat.proc3825150.chain_2712	1	STRG.6524.1,STRG.6524.2,blat.proc3825150.chain_2708,blat.proc3825150.chain_2709,blat.proc3825150.chain_2710,blat.proc3825150.chain_2711,blat.proc3825150.chain_2713	7
scaffold_25	retained_intron	7220041	7220502	-	asmbl_34391	none	blat.proc3825162.chain_971	1	STRG.27575.2	1
scaffold_24	alt_donor	2466431	2466432	-	asmbl_32789,asmbl_32790	none	STRG.26473.3,STRG.26473.4,blat.proc3825160.chain_3604	3	STRG.26473.1,STRG.26473.2,blat.proc3825160.chain_3605	3
scaffold_11	alt_acceptor	9810098	9810099	+	asmbl_5899,asmbl_5900	none	STRG.13993.2,blat.proc3825170.chain_2500,blat.proc3825170.chain_2501	3	STRG.13993.1	1
scaffold_8	retained_intron	3615643	3615920	+	asmbl_52785	none	STRG.9863.1,blat.proc3825168.chain_2410	2	STRG.9863.4	1
scaffold_10	retained_exon	7270930	7270986	+	asmbl_3269,asmbl_3272,asmbl_3273	none	STRG.12540.1,blat.proc3825170.chain_1145,blat.proc3825170.chain_1146,blat.proc3825170.chain_1149	4	STRG.12540.2,blat.proc3825170.chain_1147	2
scaffold_2	spliced_intron	5440602	5440711	+	asmbl_24423	none	STRG.1953.3	1	STRG.1953.1,blat.proc3825164.chain_2075	2
scaffold_19	spliced_intron	1106060	1106189	-	asmbl_22024,asmbl_22026,asmbl_22027	none	STRG.21903.1,STRG.21903.2,STRG.21903.4,Trinity_GG_12207_c0_g1_i2,blat.proc3825158.chain_2733	5	STRG.21903.3,Trinity_GG_12207_c0_g1_i3,blat.proc3825158.chain_2732	3
scaffold_14	starts_in_intron	12327285	12327285	-	asmbl_13564	none	blat.proc3825156.chain_2393	1	STRG.17560.1,STRG.17560.2,blat.proc3825156.chain_2392,blat.proc3825156.chain_2395	4
scaffold_2	retained_intron	6768217	6768941	+	asmbl_24491,asmbl_24492,asmbl_24495	none	Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i6,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152,blat.proc3825164.chain_2153	6	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150	5
scaffold_3	skipped_exon	19884864	19885401	-	asmbl_39669,asmbl_39674	none	STRG.4100.3,STRG.4100.4,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_245	4	STRG.4100.1,Trinity_GG_2243_c1_g1_i1,Trinity_GG_2243_c1_g1_i7,blat.proc3825150.chain_244,blat.proc3825150.chain_246	5
scaffold_4	alternate_exon	16482626	16482723	+	asmbl_41971	none	STRG.5223.1	1	STRG.5223.2	1
scaffold_3	alternate_exon	17894373	17898622	+	asmbl_40713	none	STRG.4000.1	1	STRG.4000.2	1
scaffold_11	alt_acceptor	14587451	14587452	+	asmbl_6096,asmbl_6100	none	STRG.14259.2,blat.proc3825170.chain_2699,blat.proc3825170.chain_2702	3	STRG.14259.1,blat.proc3825170.chain_2703	2
scaffold_22	ends_in_intron	11404461	11404461	+	asmbl_30380,asmbl_30381	none	STRG.25476.2,blat.proc3825176.chain_2464	2	STRG.25476.1	1
scaffold_5	starts_in_intron	16646616	16646616	+	asmbl_46116	none	STRG.6855.3	1	STRG.6855.1,STRG.6855.2,blat.proc3825166.chain_3027,blat.proc3825166.chain_3029	4
scaffold_13	alt_donor	5381771	5381772	+	asmbl_10843	none	STRG.15834.1,blat.proc3825172.chain_565	2	STRG.15834.2	1
scaffold_10	alternate_exon	16252344	16252380	+	asmbl_3707,asmbl_3709	none	STRG.13106.1,Trinity_GG_24504_c0_g1_i2,blat.proc3825170.chain_1659	3	STRG.13106.2,STRG.13106.3,blat.proc3825170.chain_1658	3
scaffold_13	retained_exon	9238672	9238827	+	asmbl_11181,asmbl_11182	none	STRG.16182.1,blat.proc3825172.chain_941,blat.proc3825172.chain_942	3	STRG.16182.2	1
scaffold_10	retained_exon	4336877	4336915	-	asmbl_4285	none	STRG.12278.1,blat.proc3825154.chain_759	2	STRG.12278.2,blat.proc3825154.chain_760	2
scaffold_28	alternate_exon	4240404	4240458	+	asmbl_37528	none	STRG.29613.1	1	STRG.29613.2	1
scaffold_22	ends_in_intron	294910	294910	+	asmbl_29832	none	blat.proc3825176.chain_1800	1	blat.proc3825176.chain_1801	1
scaffold_23	spliced_intron	7938919	7939182	-	asmbl_31065	none	STRG.26099.3,blat.proc3825160.chain_3215	2	STRG.26099.1,Trinity_GG_14574_c0_g2_i1,blat.proc3825160.chain_3214	3
scaffold_6	alternate_exon	18267115	18267724	-	asmbl_49237	none	STRG.8505.2	1	STRG.8505.1,STRG.8505.3	2
scaffold_4	spliced_intron	232495	232641	-	asmbl_42316	none	STRG.4119.2	1	STRG.4119.1,Trinity_GG_2291_c0_g1_i1,blat.proc3825150.chain_339	3
scaffold_23	starts_in_intron	10975902	10975902	+	asmbl_31895	none	Trinity_GG_31796_c0_g2_i1,blat.proc3825176.chain_3176	2	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_5	spliced_intron	10970546	10970703	+	asmbl_45712,asmbl_45713	none	STRG.6375.1,STRG.6375.2,blat.proc3825166.chain_2593,blat.proc3825166.chain_2594	4	blat.proc3825166.chain_2592	1
scaffold_11	alt_acceptor	8426462	8426463	+	asmbl_5776,asmbl_5777	none	Trinity_GG_24892_c0_g1_i2,Trinity_GG_24892_c0_g1_i3,blat.proc3825170.chain_2299,blat.proc3825170.chain_2301	4	STRG.13861.1,STRG.13861.2	2
scaffold_9	retained_exon	7750057	7750345	+	asmbl_54131	none	STRG.11223.1,Trinity_GG_23582_c1_g1_i3,blat.proc3825170.chain_28,blat.proc3825170.chain_29,blat.proc3825170.chain_31	5	blat.proc3825170.chain_30	1
scaffold_6	ends_in_intron	10898349	10898349	+	asmbl_47307	none	Trinity_GG_21655_c0_g1_i2,blat.proc3825168.chain_378	2	STRG.7907.1,STRG.7907.2,STRG.7907.3,Trinity_GG_21655_c0_g1_i1,blat.proc3825168.chain_379,blat.proc3825168.chain_381,blat.proc3825168.chain_382	7
scaffold_13	alt_donor	14563632	14563633	-	asmbl_10197,asmbl_10198,asmbl_10199	none	STRG.16504.1,STRG.16504.3,STRG.16504.5,blat.proc3825156.chain_1270,blat.proc3825156.chain_1271	5	STRG.16504.4,blat.proc3825156.chain_1272	2
scaffold_4	starts_in_intron	8989985	8989985	-	asmbl_42798,asmbl_42802	none	STRG.4718.2,blat.proc3825150.chain_818,blat.proc3825150.chain_819	3	STRG.4718.1,STRG.4718.3,STRG.4718.4,blat.proc3825150.chain_817	4
scaffold_7	spliced_intron	18615578	18615841	-	asmbl_51483,asmbl_51484,asmbl_51485,asmbl_51486	none	STRG.9681.3,blat.proc3825152.chain_2027,blat.proc3825152.chain_2028,blat.proc3825152.chain_2029	4	STRG.9681.1,STRG.9681.2,STRG.9681.4,STRG.9681.5	4
scaffold_21	ends_in_intron	5597998	5597998	-	asmbl_27681	none	Trinity_GG_13440_c0_g1_i2,blat.proc3825160.chain_1256	2	STRG.24095.1,STRG.24095.2,blat.proc3825160.chain_1255,blat.proc3825160.chain_1257	4
scaffold_3	skipped_exon	13647877	13648874	-	asmbl_39274	none	STRG.3709.3,Trinity_GG_2039_c0_g1_i3,blat.proc3825148.chain_3599	3	STRG.3709.2,Trinity_GG_2039_c0_g1_i1,blat.proc3825148.chain_3600	3
scaffold_21	ends_in_intron	5455261	5455261	+	asmbl_28571	none	blat.proc3825176.chain_1318	1	STRG.24079.1,Trinity_GG_30672_c0_g2_i4,blat.proc3825176.chain_1319	3
scaffold_8	starts_in_intron	9169513	9169513	-	asmbl_52016,asmbl_52020	none	STRG.10185.4,blat.proc3825152.chain_2350	2	STRG.10185.1,STRG.10185.2,STRG.10185.3	3
scaffold_19	retained_intron	5464093	5464178	+	asmbl_21376	none	STRG.22117.4,blat.proc3825174.chain_3158	2	STRG.22117.1,blat.proc3825174.chain_3157,blat.proc3825174.chain_3160,blat.proc3825174.chain_3161	4
scaffold_2	alt_donor	9300313	9300314	-	asmbl_23374	none	STRG.2174.1,Trinity_GG_1209_c0_g1_i1,blat.proc3825148.chain_2193	3	STRG.2174.2	1
scaffold_4	starts_in_intron	14506472	14506472	+	asmbl_41878	none	Trinity_GG_20146_c0_g1_i2,blat.proc3825166.chain_1484	2	STRG.5065.1,Trinity_GG_20146_c0_g1_i1,blat.proc3825166.chain_1483	3
scaffold_4	skipped_exon	4896325	4898259	-	asmbl_42541	none	STRG.4381.2,blat.proc3825150.chain_619	2	STRG.4381.1,blat.proc3825150.chain_618	2
scaffold_10	alternate_exon	11105577	11108052	+	asmbl_3450	none	STRG.12779.1,blat.proc3825170.chain_1378	2	blat.proc3825170.chain_1377	1
scaffold_22	retained_exon	7691782	7691840	+	asmbl_30210	none	blat.proc3825176.chain_2183	1	STRG.25121.1	1
scaffold_14	alt_donor	11688845	11688846	-	asmbl_13521,asmbl_13522,asmbl_13525	none	STRG.17516.2,STRG.17516.3,blat.proc3825156.chain_2313,blat.proc3825156.chain_2315	4	STRG.17516.1,blat.proc3825156.chain_2316	2
scaffold_5	starts_in_intron	11914252	11914252	+	asmbl_45773	none	blat.proc3825166.chain_2652	1	STRG.6447.1,STRG.6447.2,blat.proc3825166.chain_2650,blat.proc3825166.chain_2651	4
scaffold_11	alternate_exon	4773768	4775415	-	asmbl_6634	none	STRG.13571.2,Trinity_GG_7609_c1_g1_i1,blat.proc3825154.chain_2170	3	STRG.13571.1,blat.proc3825154.chain_2168	2
scaffold_14	alternate_exon	9587109	9588720	+	asmbl_12289	none	STRG.17347.1,blat.proc3825172.chain_2110	2	blat.proc3825172.chain_2111	1
scaffold_25	alt_donor	10043774	10043775	-	asmbl_34538	none	STRG.27803.2	1	STRG.27803.1	1
scaffold_6	alt_acceptor	18218562	18218563	-	asmbl_49233	none	STRG.8495.1	1	STRG.8495.2	1
scaffold_18	starts_in_intron	5538259	5538259	-	asmbl_19843	none	blat.proc3825158.chain_2232	1	STRG.21308.1,blat.proc3825158.chain_2231	2
scaffold_6	alt_donor	13126161	13126162	-	asmbl_48876	none	STRG.8069.2,blat.proc3825152.chain_467	2	STRG.8069.1,blat.proc3825152.chain_466	2
scaffold_2	spliced_intron	17838616	17838702	-	asmbl_23754	none	STRG.2679.1,blat.proc3825148.chain_2520	2	blat.proc3825148.chain_2523	1
scaffold_26	starts_in_intron	10119967	10119967	-	asmbl_35818,asmbl_35822	none	STRG.28530.3,Trinity_GG_15946_c0_g1_i8,blat.proc3825162.chain_1709	3	STRG.28530.1,STRG.28530.2,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710,blat.proc3825162.chain_1712,blat.proc3825162.chain_1714,blat.proc3825162.chain_1715	10
scaffold_13	skipped_exon	4243305	4244305	-	asmbl_9611,asmbl_9614	none	STRG.15752.1,STRG.15752.3,blat.proc3825156.chain_590	3	STRG.15752.4,STRG.15752.5,blat.proc3825156.chain_589,blat.proc3825156.chain_591,blat.proc3825156.chain_592	5
scaffold_2	retained_intron	14277290	14277855	+	asmbl_24906	none	blat.proc3825164.chain_2592	1	STRG.2428.1,STRG.2428.2,STRG.2428.3,STRG.2428.4,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596	7
scaffold_27	retained_intron	2049473	2049594	+	asmbl_36064	none	blat.proc3825178.chain_1810	1	STRG.28688.1,blat.proc3825178.chain_1809,blat.proc3825178.chain_1811	3
scaffold_25	starts_in_intron	289973	289973	+	asmbl_33322	none	STRG.27068.2	1	STRG.27068.1	1
scaffold_395	skipped_exon	3031	4016	-	asmbl_41076	none	STRG.30306.2,Trinity_GG_17004_c0_g1_i1	2	STRG.30306.1,blat.proc3825162.chain_3431	2
scaffold_23	alternate_exon	2627067	2633996	+	asmbl_31411	none	STRG.25731.3,Trinity_GG_31521_c0_g1_i4,blat.proc3825176.chain_2694	3	STRG.25731.5,Trinity_GG_31521_c0_g1_i6,blat.proc3825176.chain_2693	3
scaffold_3	retained_exon	6037861	6038979	-	asmbl_38879,asmbl_38881,asmbl_38882	none	STRG.3259.1,STRG.3259.6,STRG.3259.7	3	STRG.3259.3,STRG.3259.4	2
scaffold_26	starts_in_intron	35229	35229	-	asmbl_35364	none	blat.proc3825162.chain_1173	1	STRG.27828.1,blat.proc3825162.chain_1174	2
scaffold_27	alternate_exon	9333891	9333998	-	asmbl_37132	none	blat.proc3825162.chain_2362	1	STRG.29184.1,blat.proc3825162.chain_2361,blat.proc3825162.chain_2363	3
scaffold_26	retained_intron	9315862	9315995	+	asmbl_35216,asmbl_35218,asmbl_35219,asmbl_35221	none	Trinity_GG_33078_c0_g1_i8,blat.proc3825178.chain_1611,blat.proc3825178.chain_1613,blat.proc3825178.chain_1614,blat.proc3825178.chain_1615	5	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	6
scaffold_1	starts_in_intron	5998931	5998931	-	asmbl_314	none	blat.proc3825148.chain_403	1	STRG.404.1,STRG.404.2,blat.proc3825148.chain_397,blat.proc3825148.chain_399	4
scaffold_7	starts_in_intron	715203	715203	-	asmbl_50696	none	blat.proc3825152.chain_1093	1	STRG.8610.1,blat.proc3825152.chain_1090,blat.proc3825152.chain_1092	3
scaffold_17	alternate_exon	11036022	11036188	-	asmbl_18266	none	STRG.20664.1	1	STRG.20664.2,STRG.20664.4,blat.proc3825158.chain_1638,blat.proc3825158.chain_1639	4
scaffold_17	retained_exon	2634874	2635014	+	asmbl_18675,asmbl_18676	none	STRG.20060.4,blat.proc3825174.chain_928	2	STRG.20060.3,Trinity_GG_28292_c0_g1_i3,blat.proc3825174.chain_926	3
scaffold_23	alt_donor	6912395	6912396	-	asmbl_30990	none	STRG.26021.2,blat.proc3825160.chain_3180	2	STRG.26021.1,STRG.26021.3,blat.proc3825160.chain_3178	3
scaffold_11	spliced_intron	16652240	16652614	+	asmbl_6168	none	STRG.14364.1,blat.proc3825170.chain_2892	2	blat.proc3825170.chain_2890,blat.proc3825170.chain_2891	2
scaffold_14	spliced_intron	2374520	2375890	-	asmbl_12934,asmbl_12938	none	STRG.16854.5,STRG.16854.7	2	STRG.16854.1,Trinity_GG_9462_c0_g1_i7	2
scaffold_21	alternate_exon	3829010	3829125	-	asmbl_27552	none	STRG.23974.3	1	STRG.23974.1,STRG.23974.2,STRG.23974.4,blat.proc3825160.chain_1116,blat.proc3825160.chain_1117,blat.proc3825160.chain_1118	6
scaffold_16	starts_in_intron	13918680	13918680	+	asmbl_16663	none	Trinity_GG_28152_c0_g1_i1,blat.proc3825174.chain_681	2	STRG.19787.1,Trinity_GG_28152_c0_g1_i2,blat.proc3825174.chain_680	3
scaffold_6	starts_in_intron	12208853	12208853	+	asmbl_47385	none	Trinity_GG_21695_c0_g1_i2,blat.proc3825168.chain_458	2	STRG.7991.1,STRG.7991.2,Trinity_GG_21695_c0_g1_i1,Trinity_GG_21695_c0_g1_i3,Trinity_GG_21695_c0_g1_i4,blat.proc3825168.chain_455,blat.proc3825168.chain_456,blat.proc3825168.chain_457	8
scaffold_6	alt_donor	18258207	18258208	-	asmbl_49237,asmbl_49238	none	STRG.8505.1,STRG.8505.2	2	STRG.8505.3	1
scaffold_9	alt_acceptor	16557813	16557814	-	asmbl_55586	none	blat.proc3825154.chain_270	1	STRG.11806.1,STRG.11806.2,STRG.11806.3,STRG.11806.4,STRG.11806.5,Trinity_GG_6524_c0_g2_i1,blat.proc3825154.chain_267,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274,blat.proc3825154.chain_276	11
scaffold_20	alternate_exon	11928981	11929027	+	asmbl_27107	none	STRG.23696.2	1	STRG.23696.1,STRG.23696.3,blat.proc3825176.chain_836,blat.proc3825176.chain_837,blat.proc3825176.chain_838	5
scaffold_13	alt_acceptor	13559263	13559264	+	asmbl_11392	none	STRG.16409.1	1	STRG.16409.2	1
scaffold_26	starts_in_intron	6662851	6662851	+	asmbl_35101	none	blat.proc3825178.chain_1424,blat.proc3825178.chain_1425	2	STRG.28377.1,blat.proc3825178.chain_1422	2
scaffold_18	ends_in_intron	9634887	9634887	-	asmbl_20064	none	Trinity_GG_12059_c0_g1_i5,blat.proc3825158.chain_2483	2	STRG.21576.2,blat.proc3825158.chain_2480,blat.proc3825158.chain_2481	3
scaffold_5	alt_acceptor	4696550	4696551	+	asmbl_45286	none	blat.proc3825166.chain_2150	1	STRG.5925.2,STRG.5925.3,blat.proc3825166.chain_2149	3
scaffold_14	skipped_exon	6901549	6902436	+	asmbl_12112	none	STRG.17131.2,blat.proc3825172.chain_1908	2	STRG.17131.1,blat.proc3825172.chain_1909	2
scaffold_21	skipped_exon	255543	257073	-	asmbl_27291	none	blat.proc3825160.chain_807	1	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_809,blat.proc3825160.chain_810,blat.proc3825160.chain_811,blat.proc3825160.chain_812	15
scaffold_6	retained_exon	4319900	4320003	+	asmbl_46878	none	STRG.7409.3	1	STRG.7409.2,blat.proc3825166.chain_3614	2
scaffold_12	ends_in_intron	3104699	3104699	+	asmbl_7543	none	blat.proc3825170.chain_3103	1	STRG.14551.1,STRG.14551.2	2
scaffold_271	ends_in_intron	202	202	+	asmbl_37228	none	Trinity_GG_34061_c0_g1_i1	1	STRG.30254.1,blat.proc3825178.chain_3350	2
scaffold_27	skipped_exon	381931	384414	-	asmbl_36684	none	STRG.28567.1,blat.proc3825162.chain_1731	2	STRG.28567.3,blat.proc3825162.chain_1735	2
scaffold_17	alt_acceptor	9089411	9089412	-	asmbl_18148,asmbl_18150,asmbl_18151,asmbl_18152	none	STRG.20538.2,STRG.20538.3,STRG.20538.4,blat.proc3825158.chain_1560,blat.proc3825158.chain_1561	5	STRG.20538.1	1
scaffold_20	skipped_exon	5549903	5550893	-	asmbl_25769,asmbl_25773	none	STRG.23182.2,STRG.23182.3	2	STRG.23182.1,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216,blat.proc3825160.chain_217	7
scaffold_17	skipped_exon	2356401	2358464	+	asmbl_18638,asmbl_18641,asmbl_18642	none	STRG.20030.4,STRG.20030.5,STRG.20030.6	3	STRG.20030.1,STRG.20030.2,STRG.20030.7,blat.proc3825174.chain_907,blat.proc3825174.chain_909	5
scaffold_15	retained_exon	4231073	4231265	+	asmbl_15127	none	Trinity_GG_27280_c0_g1_i5,blat.proc3825172.chain_2839	2	STRG.18172.1,blat.proc3825172.chain_2837,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842	5
scaffold_21	retained_exon	7727561	7727721	+	asmbl_28764	none	STRG.24316.3,blat.proc3825176.chain_1476	2	STRG.24316.1	1
scaffold_13	ends_in_intron	6610335	6610335	+	asmbl_10949,asmbl_10950	none	STRG.15951.4,blat.proc3825172.chain_678	2	STRG.15951.2,blat.proc3825172.chain_676	2
scaffold_2	alt_acceptor	14196877	14196878	-	asmbl_23576	none	STRG.2414.3	1	STRG.2414.1,STRG.2414.2,STRG.2414.4,blat.proc3825148.chain_2405,blat.proc3825148.chain_2406,blat.proc3825148.chain_2407	6
scaffold_1	alternate_exon	20135133	20135301	-	asmbl_1174	none	STRG.1386.7	1	STRG.1386.2,STRG.1386.6	2
scaffold_13	retained_intron	350724	350855	-	asmbl_9302	none	Trinity_GG_8667_c0_g1_i11,blat.proc3825156.chain_309	2	STRG.15440.1,Trinity_GG_8667_c0_g1_i6,Trinity_GG_8667_c0_g1_i7,Trinity_GG_8667_c0_g1_i9,blat.proc3825156.chain_305,blat.proc3825156.chain_307,blat.proc3825156.chain_310,blat.proc3825156.chain_311	8
scaffold_15	starts_in_intron	15153687	15153687	+	asmbl_15721	none	STRG.18906.5	1	Trinity_GG_27624_c0_g1_i6,Trinity_GG_27624_c0_g1_i8,blat.proc3825172.chain_3436,blat.proc3825172.chain_3438,blat.proc3825172.chain_3439,blat.proc3825172.chain_3440	6
scaffold_27	starts_in_intron	982428	982428	+	asmbl_35978	none	Trinity_GG_33132_c0_g1_i1,blat.proc3825178.chain_1710	2	STRG.28596.1,STRG.28596.2,Trinity_GG_33132_c0_g1_i3,blat.proc3825178.chain_1711	4
scaffold_6	alternate_exon	2924099	2927678	-	asmbl_48197	none	STRG.7297.4	1	blat.proc3825150.chain_3330	1
scaffold_3	spliced_intron	17456078	17456973	+	asmbl_40679,asmbl_40681,asmbl_40683,asmbl_40684	none	STRG.3978.1,STRG.3978.2,STRG.3978.4,STRG.3978.5,Trinity_GG_19520_c0_g1_i2,blat.proc3825166.chain_436	6	STRG.3978.3,Trinity_GG_19520_c0_g1_i1,blat.proc3825166.chain_435	3
scaffold_10	alt_donor	557665	557666	-	asmbl_3967,asmbl_3969	none	STRG.11937.1,Trinity_GG_6599_c0_g1_i2,blat.proc3825154.chain_398,blat.proc3825154.chain_399	4	STRG.11937.2	1
scaffold_11	spliced_intron	8103129	8103233	+	asmbl_5728,asmbl_5729,asmbl_5731,asmbl_5732	none	STRG.13823.1,STRG.13823.2,STRG.13823.3,blat.proc3825170.chain_2349,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	6	Trinity_GG_24917_c1_g1_i8,blat.proc3825170.chain_2353	2
scaffold_20	starts_in_intron	10248682	10248682	-	asmbl_26097	none	blat.proc3825160.chain_659	1	STRG.23572.1,STRG.23572.2,blat.proc3825160.chain_660,blat.proc3825160.chain_662,blat.proc3825160.chain_663,blat.proc3825160.chain_664	6
scaffold_8	spliced_intron	16397567	16398401	-	asmbl_52385	none	STRG.10626.3,blat.proc3825152.chain_2849	2	STRG.10626.1,STRG.10626.2,STRG.10626.4,blat.proc3825152.chain_2845,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	8
scaffold_1	retained_intron	14357027	14357107	+	asmbl_2389	none	blat.proc3825164.chain_1183	1	STRG.1036.1,STRG.1036.2,blat.proc3825164.chain_1182,blat.proc3825164.chain_1184	4
scaffold_5	spliced_intron	13022943	13023173	+	asmbl_45840	none	STRG.6532.3	1	STRG.6532.2,blat.proc3825166.chain_2715	2
scaffold_26	spliced_intron	3591176	3591371	+	asmbl_34798	none	blat.proc3825178.chain_1073	1	STRG.28041.1	1
scaffold_15	alt_acceptor	12870883	12870884	-	asmbl_14606	none	STRG.18739.1,Trinity_GG_10520_c0_g1_i1,blat.proc3825156.chain_3596	3	STRG.18739.2	1
scaffold_24	spliced_intron	5244901	5245095	-	asmbl_32883	none	STRG.26615.1,blat.proc3825162.chain_1	2	STRG.26615.2	1
scaffold_9	spliced_intron	12112957	12113296	+	asmbl_54411,asmbl_54413	none	STRG.11537.3,blat.proc3825170.chain_369	2	STRG.11537.2,blat.proc3825170.chain_367	2
scaffold_17	starts_in_intron	1302183	1302183	-	asmbl_17696	none	blat.proc3825158.chain_1033	1	STRG.19975.1,STRG.19975.2,blat.proc3825158.chain_1032,blat.proc3825158.chain_1034	4
scaffold_23	ends_in_intron	5733428	5733428	+	asmbl_31595	none	Trinity_GG_31589_c0_g1_i3,blat.proc3825176.chain_2812	2	STRG.25943.1,STRG.25943.2,Trinity_GG_31589_c0_g1_i1,Trinity_GG_31589_c0_g1_i2,blat.proc3825176.chain_2811,blat.proc3825176.chain_2813	6
scaffold_4	starts_in_intron	6246715	6246715	+	asmbl_41383	none	blat.proc3825166.chain_944	1	STRG.4494.1,STRG.4494.2,STRG.4494.3,blat.proc3825166.chain_943,blat.proc3825166.chain_945	5
scaffold_2	alt_donor	19359380	19359381	+	asmbl_25279	none	STRG.2802.1,blat.proc3825164.chain_3043	2	STRG.2802.2	1
scaffold_2	ends_in_intron	168418	168418	+	asmbl_24083	none	Trinity_GG_18188_c0_g1_i6,blat.proc3825164.chain_1670	2	STRG.1522.1,STRG.1522.2,blat.proc3825164.chain_1668,blat.proc3825164.chain_1669,blat.proc3825164.chain_1671	5
scaffold_17	skipped_exon	8355060	8355515	+	asmbl_18986	none	STRG.20457.1,Trinity_GG_28517_c0_g1_i1,blat.proc3825174.chain_1300	3	STRG.20457.2,blat.proc3825174.chain_1301	2
scaffold_18	alt_donor	1955780	1955781	+	asmbl_20395	none	Trinity_GG_28911_c0_g1_i1,blat.proc3825174.chain_2012	2	STRG.21087.2,Trinity_GG_28911_c0_g1_i2,blat.proc3825174.chain_2011	3
scaffold_20	starts_in_intron	9108304	9108304	+	asmbl_26832	none	Trinity_GG_30271_c0_g1_i7	1	STRG.23455.1,Trinity_GG_30271_c0_g1_i1,Trinity_GG_30271_c0_g1_i2,Trinity_GG_30271_c0_g1_i3,blat.proc3825176.chain_612,blat.proc3825176.chain_613,blat.proc3825176.chain_615	7
scaffold_17	ends_in_intron	14327913	14327913	+	asmbl_19391	none	blat.proc3825174.chain_1804	1	STRG.20909.1,blat.proc3825174.chain_1802	2
scaffold_5	alt_acceptor	13945925	13945926	-	asmbl_44584	none	STRG.6606.1	1	STRG.6606.2	1
scaffold_18	starts_in_intron	6245141	6245141	-	asmbl_19893	none	blat.proc3825158.chain_2294	1	STRG.21354.1,blat.proc3825158.chain_2293	2
scaffold_2	retained_intron	7775380	7775866	-	asmbl_23275	none	STRG.2072.3,blat.proc3825148.chain_2100	2	STRG.2072.1,STRG.2072.2,blat.proc3825148.chain_2099,blat.proc3825148.chain_2101	4
scaffold_19	retained_intron	5155129	5155211	+	asmbl_21356,asmbl_21357,asmbl_21358	none	STRG.22084.1,STRG.22084.2,STRG.22084.4,blat.proc3825174.chain_3026,blat.proc3825174.chain_3027	5	STRG.22084.3,blat.proc3825174.chain_3028	2
scaffold_11	ends_in_intron	4740106	4740106	+	asmbl_5510	none	Trinity_GG_24775_c2_g1_i1,blat.proc3825170.chain_2105	2	STRG.13566.1	1
scaffold_27	ends_in_intron	2549539	2549539	+	asmbl_36095	none	blat.proc3825178.chain_1894	1	STRG.28733.1	1
scaffold_19	spliced_intron	8263705	8263839	+	asmbl_21509	none	Trinity_GG_29609_c0_g1_i1	1	Trinity_GG_29609_c0_g1_i2,blat.proc3825174.chain_3263	2
scaffold_20	starts_in_intron	4388812	4388812	-	asmbl_25735	none	blat.proc3825160.chain_199	1	STRG.23118.1,blat.proc3825160.chain_200	2
scaffold_21	starts_in_intron	400093	400093	-	asmbl_27306	none	Trinity_GG_13226_c0_g1_i4,blat.proc3825160.chain_851	2	STRG.23733.1,STRG.23733.2,Trinity_GG_13226_c0_g1_i1,Trinity_GG_13226_c0_g1_i6,blat.proc3825160.chain_849,blat.proc3825160.chain_853	6
scaffold_23	starts_in_intron	1993613	1993613	+	asmbl_31370	none	blat.proc3825176.chain_2622	1	STRG.25668.1,Trinity_GG_31478_c0_g1_i2,blat.proc3825176.chain_2621	3
scaffold_5	ends_in_intron	2670604	2670604	-	asmbl_43893,asmbl_43898	none	STRG.5796.6,blat.proc3825150.chain_1944,blat.proc3825150.chain_1946	3	STRG.5796.2,STRG.5796.3,STRG.5796.5,blat.proc3825150.chain_1947,blat.proc3825150.chain_1949	5
scaffold_18	alt_donor	5584881	5584882	-	asmbl_19863	none	STRG.21314.1,blat.proc3825158.chain_2270	2	STRG.21314.2	1
scaffold_8	alt_acceptor	11976916	11976917	-	asmbl_52175	none	STRG.10396.2,Trinity_GG_5731_c0_g1_i1,blat.proc3825152.chain_2547	3	STRG.10396.3	1
scaffold_6	retained_exon	9956826	9957719	+	asmbl_47254	none	STRG.7836.1,blat.proc3825168.chain_301	2	STRG.7836.2,blat.proc3825168.chain_302	2
scaffold_25	ends_in_intron	8475351	8475351	+	asmbl_33736	none	blat.proc3825178.chain_790	1	STRG.27679.1,blat.proc3825178.chain_789,blat.proc3825178.chain_791,blat.proc3825178.chain_792	4
scaffold_21	alternate_exon	6476502	6476543	-	asmbl_27724	none	STRG.24168.1,blat.proc3825160.chain_1313	2	STRG.24168.2	1
scaffold_1	ends_in_intron	3436317	3436317	+	asmbl_1596	none	Trinity_GG_17470_c0_g1_i3,blat.proc3825164.chain_337	2	STRG.212.1,STRG.212.2,Trinity_GG_17470_c0_g1_i1,Trinity_GG_17470_c0_g1_i2,blat.proc3825164.chain_335,blat.proc3825164.chain_336	6
scaffold_28	alternate_exon	5014596	5014616	+	asmbl_37557,asmbl_37560,asmbl_37561	none	Trinity_GG_33747_c0_g2_i4,blat.proc3825178.chain_2832,blat.proc3825178.chain_2833,blat.proc3825178.chain_2834	4	Trinity_GG_33747_c0_g1_i3,blat.proc3825178.chain_2831	2
scaffold_2	retained_intron	14221018	14221150	-	asmbl_23580,asmbl_23582	none	STRG.2418.2,blat.proc3825148.chain_2354,blat.proc3825148.chain_2355	3	blat.proc3825148.chain_2357,blat.proc3825148.chain_2358	2
scaffold_26	starts_in_intron	5363712	5363712	+	asmbl_34984	none	blat.proc3825178.chain_1276	1	STRG.28241.1,blat.proc3825178.chain_1277	2
scaffold_19	skipped_exon	12337312	12338070	+	asmbl_21789	none	blat.proc3825174.chain_3510	1	STRG.22564.1,STRG.22564.2,blat.proc3825174.chain_3511,blat.proc3825174.chain_3512,blat.proc3825174.chain_3513	5
scaffold_16	alternate_exon	14542466	14546060	-	asmbl_17460	none	blat.proc3825158.chain_902	1	STRG.19850.2	1
scaffold_22	retained_intron	214832	215205	+	asmbl_29820	none	Trinity_GG_30960_c0_g1_i4,blat.proc3825176.chain_1806	2	STRG.24676.1,STRG.24676.2,STRG.24676.3,blat.proc3825176.chain_1807,blat.proc3825176.chain_1808	5
scaffold_17	retained_intron	9029724	9030964	-	asmbl_18138	none	Trinity_GG_11556_c0_g1_i5,blat.proc3825158.chain_1574	2	STRG.20532.6	1
scaffold_1	spliced_intron	16478811	16478993	-	asmbl_989,asmbl_990,asmbl_991,asmbl_995,asmbl_996	none	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1098,blat.proc3825148.chain_1100,blat.proc3825148.chain_1102,blat.proc3825148.chain_1104	7	blat.proc3825148.chain_1097,blat.proc3825148.chain_1099	2
scaffold_13	alternate_exon	10228524	10228561	-	asmbl_10055	none	STRG.16258.2,blat.proc3825156.chain_1118	2	STRG.16258.1,STRG.16258.3,STRG.16258.4,blat.proc3825156.chain_1115,blat.proc3825156.chain_1116	5
scaffold_15	spliced_intron	15906139	15906230	-	asmbl_14807,asmbl_14809,asmbl_14810,asmbl_14811,asmbl_14812,asmbl_14813,asmbl_14814	none	STRG.18975.1,STRG.18975.2,blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_64,blat.proc3825158.chain_65,blat.proc3825158.chain_66,blat.proc3825158.chain_67	8	Trinity_GG_10636_c0_g1_i3,blat.proc3825158.chain_62	2
scaffold_13	starts_in_intron	3777222	3777222	-	asmbl_9576	none	STRG.15704.1	1	blat.proc3825156.chain_535,blat.proc3825156.chain_579	2
scaffold_11	alt_donor	5716322	5716323	+	asmbl_5584	none	Trinity_GG_24819_c0_g1_i2,blat.proc3825170.chain_2175	2	STRG.13636.1,Trinity_GG_24819_c0_g1_i1,blat.proc3825170.chain_2174	3
scaffold_1	alt_acceptor	18028928	18028929	-	asmbl_1075	none	STRG.1268.5	1	STRG.1268.4,STRG.1268.7,blat.proc3825164.chain_1345	3
scaffold_5	spliced_intron	15766781	15766917	+	asmbl_46014,asmbl_46018,asmbl_46019,asmbl_46020,asmbl_46022,asmbl_46023	none	STRG.6771.1,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2920,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	7	blat.proc3825166.chain_2915,blat.proc3825166.chain_2916	2
scaffold_7	starts_in_intron	10267810	10267810	-	asmbl_51115	none	blat.proc3825152.chain_1579	1	STRG.9203.1,blat.proc3825152.chain_1582	2
scaffold_7	spliced_intron	13863191	13863810	-	asmbl_51318,asmbl_51319,asmbl_51321,asmbl_51322	none	STRG.9480.1,STRG.9480.2,STRG.9480.4,STRG.9480.5,blat.proc3825152.chain_1822,blat.proc3825152.chain_1823	6	STRG.9480.3,blat.proc3825152.chain_1825	2
scaffold_13	spliced_intron	8955171	8955239	+	asmbl_11164,asmbl_11165,asmbl_11166,asmbl_11167	none	STRG.16167.2,STRG.16167.3,blat.proc3825172.chain_867,blat.proc3825172.chain_868,blat.proc3825172.chain_871	5	STRG.16167.1,blat.proc3825172.chain_870	2
scaffold_15	spliced_intron	4494181	4494312	+	asmbl_15142,asmbl_15143,asmbl_15144,asmbl_15145,asmbl_15148	none	STRG.18177.1,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2856,blat.proc3825172.chain_2857,blat.proc3825172.chain_2858	6	STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2855	3
scaffold_13	spliced_intron	8013555	8013678	+	asmbl_11088,asmbl_11093	none	STRG.16081.1,STRG.16081.2,blat.proc3825172.chain_788	3	blat.proc3825172.chain_787	1
scaffold_4	alt_donor	16871809	16871810	-	asmbl_43225,asmbl_43227,asmbl_43228,asmbl_43230	none	STRG.5273.1,STRG.5273.2,STRG.5273.3,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	5	STRG.5273.4	1
scaffold_16	alternate_exon	6147933	6148838	+	asmbl_16282	none	STRG.19354.4	1	STRG.19354.2,STRG.19354.3,blat.proc3825174.chain_143	3
scaffold_16	skipped_exon	433622	434014	-	asmbl_16871,asmbl_16876,asmbl_16880	none	STRG.19041.1,blat.proc3825158.chain_196,blat.proc3825158.chain_203	3	STRG.19041.2,blat.proc3825158.chain_201	2
scaffold_22	spliced_intron	224379	224570	-	asmbl_29075,asmbl_29076,asmbl_29081,asmbl_29082	none	STRG.24683.1,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1905,blat.proc3825160.chain_1908	5	STRG.24683.2,STRG.24683.3,blat.proc3825160.chain_1904,blat.proc3825160.chain_1907	4
scaffold_9	alternate_exon	5247397	5247520	+	asmbl_54017	none	STRG.11119.2,blat.proc3825168.chain_3654	2	STRG.11119.1,blat.proc3825168.chain_3653	2
scaffold_1	alt_acceptor	11680839	11680840	+	asmbl_2129	none	STRG.781.1,blat.proc3825164.chain_849	2	STRG.781.2,blat.proc3825164.chain_848	2
scaffold_19	alt_donor	6686908	6686909	+	asmbl_21434	none	blat.proc3825174.chain_3126	1	STRG.22189.1,Trinity_GG_29526_c0_g1_i1,Trinity_GG_29526_c0_g1_i3,blat.proc3825174.chain_3124,blat.proc3825174.chain_3127	5
scaffold_3	starts_in_intron	12901643	12901643	-	asmbl_39239	none	blat.proc3825148.chain_3548	1	STRG.3674.1,STRG.3674.2,blat.proc3825148.chain_3546,blat.proc3825148.chain_3547	4
scaffold_15	starts_in_intron	15916443	15916443	+	asmbl_15845	none	Trinity_GG_27681_c1_g1_i2,blat.proc3825172.chain_3551	2	STRG.18976.1	1
scaffold_14	ends_in_intron	3164692	3164692	+	asmbl_11919	none	Trinity_GG_26576_c2_g1_i1	1	STRG.16908.1,STRG.16908.3,STRG.16908.4,STRG.16908.5,blat.proc3825172.chain_1612,blat.proc3825172.chain_1613,blat.proc3825172.chain_1614	7
scaffold_13	skipped_exon	8699211	8700085	+	asmbl_11139	none	STRG.16140.2,blat.proc3825172.chain_936	2	STRG.16140.1,blat.proc3825172.chain_934,blat.proc3825172.chain_937	3
scaffold_2	spliced_intron	8055222	8055347	-	asmbl_23302,asmbl_23303,asmbl_23304,asmbl_23305,asmbl_23306	none	STRG.2094.1,STRG.2094.2,STRG.2094.3,STRG.2094.4,blat.proc3825148.chain_2117,blat.proc3825148.chain_2118,blat.proc3825148.chain_2119,blat.proc3825148.chain_2121	8	blat.proc3825148.chain_2120	1
scaffold_340	spliced_intron	2968	3178	+	asmbl_41011,asmbl_41014,asmbl_41015	none	STRG.30295.1,STRG.30295.2,STRG.30295.3	3	STRG.30295.4,STRG.30295.5,Trinity_GG_34083_c0_g1_i8,blat.proc3825178.chain_3395	4
scaffold_2	alternate_exon	3372916	3373010	+	asmbl_24278	none	STRG.1773.1,blat.proc3825164.chain_1894	2	STRG.1773.2,STRG.1773.3,blat.proc3825164.chain_1895	3
scaffold_3	alt_acceptor	13700201	13700202	+	asmbl_40454	none	STRG.3717.2	1	STRG.3717.1,blat.proc3825166.chain_218,blat.proc3825166.chain_221,blat.proc3825166.chain_222	4
scaffold_16	starts_in_intron	8072943	8072943	-	asmbl_17224	none	Trinity_GG_10901_c1_g1_i1	1	STRG.19451.1,Trinity_GG_10901_c0_g1_i2,blat.proc3825158.chain_559	3
scaffold_19	spliced_intron	12423727	12423837	+	asmbl_21797	none	Trinity_GG_29795_c0_g1_i1,blat.proc3825174.chain_3592	2	Trinity_GG_29795_c0_g1_i2,blat.proc3825174.chain_3593	2
scaffold_16	skipped_exon	125457	125887	+	asmbl_15997,asmbl_16000	none	STRG.19007.2,STRG.19007.3,Trinity_GG_27742_c0_g1_i2,blat.proc3825172.chain_3685	4	STRG.19007.1,STRG.19007.4,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3683	4
scaffold_28	spliced_intron	5755532	5756003	+	asmbl_37603	none	STRG.29716.1,Trinity_GG_33774_c0_g1_i1,blat.proc3825178.chain_2881	3	Trinity_GG_33774_c0_g2_i1,blat.proc3825178.chain_2883	2
scaffold_18	spliced_intron	4308398	4308494	+	asmbl_20511	none	STRG.21222.1	1	STRG.21222.2	1
scaffold_14	alternate_exon	3380767	3380833	+	asmbl_11939	none	STRG.16922.2	1	STRG.16922.1,blat.proc3825172.chain_1680	2
scaffold_1	ends_in_intron	5124891	5124891	+	asmbl_1696	none	Trinity_GG_17533_c0_g1_i2,blat.proc3825164.chain_447	2	STRG.316.1,Trinity_GG_17533_c0_g1_i1,blat.proc3825164.chain_448	3
scaffold_12	alternate_exon	14188102	14188210	-	asmbl_8998,asmbl_8999	none	STRG.15259.2,STRG.15259.3	2	STRG.15259.1,blat.proc3825156.chain_61,blat.proc3825156.chain_62	3
scaffold_4	spliced_intron	4417425	4417532	+	asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41249,asmbl_41254,asmbl_41255,asmbl_41256,asmbl_41258,asmbl_41261	none	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_842,blat.proc3825166.chain_847,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_851,blat.proc3825166.chain_855	14	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_853,blat.proc3825166.chain_854	3
scaffold_2	retained_exon	10638080	10638130	-	asmbl_23426,asmbl_23427,asmbl_23430	none	STRG.2224.1,blat.proc3825148.chain_2261,blat.proc3825148.chain_2262,blat.proc3825148.chain_2263	4	STRG.2224.3,blat.proc3825148.chain_2260	2
scaffold_11	ends_in_intron	3181827	3181827	+	asmbl_5407	none	STRG.13448.1	1	Trinity_GG_24637_c0_g1_i1,blat.proc3825170.chain_1876	2
scaffold_2	skipped_exon	15267438	15267954	+	asmbl_25001,asmbl_25006	none	STRG.2485.3,blat.proc3825164.chain_2605	2	blat.proc3825164.chain_2604	1
scaffold_13	spliced_intron	1238200	1238338	+	asmbl_10546,asmbl_10547,asmbl_10548,asmbl_10550,asmbl_10551,asmbl_10556	none	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,STRG.15494.7,Trinity_GG_25867_c0_g1_i3,blat.proc3825172.chain_307,blat.proc3825172.chain_311	9	Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_312	2
scaffold_21	spliced_intron	5170787	5170985	-	asmbl_27621,asmbl_27623,asmbl_27624,asmbl_27625,asmbl_27627	none	STRG.24060.1,blat.proc3825160.chain_1237,blat.proc3825160.chain_1238,blat.proc3825160.chain_1239,blat.proc3825160.chain_1241,blat.proc3825160.chain_1242	6	blat.proc3825160.chain_1240	1
scaffold_28	alt_acceptor	7234353	7234354	+	asmbl_37642	none	STRG.29785.2,Trinity_GG_33804_c1_g1_i1,blat.proc3825178.chain_2931,blat.proc3825178.chain_2933	4	STRG.29785.3	1
scaffold_6	alt_acceptor	6026396	6026397	+	asmbl_46989	none	STRG.7554.2	1	STRG.7554.1,STRG.7554.3,blat.proc3825166.chain_3718	3
scaffold_11	retained_intron	9018786	9019232	-	asmbl_6901,asmbl_6903	none	Trinity_GG_7749_c0_g1_i4,Trinity_GG_7749_c0_g1_i6,blat.proc3825154.chain_2409,blat.proc3825154.chain_2410,blat.proc3825154.chain_2411	5	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406,blat.proc3825154.chain_2407,blat.proc3825154.chain_2408	6
scaffold_25	alt_acceptor	4533836	4533837	-	asmbl_34205,asmbl_34207	none	STRG.27391.1,Trinity_GG_15331_c0_g1_i3,Trinity_GG_15331_c0_g1_i4,blat.proc3825162.chain_713,blat.proc3825162.chain_715	5	STRG.27391.2	1
scaffold_11	retained_intron	2833544	2833641	+	asmbl_5382	none	blat.proc3825170.chain_1952	1	STRG.13415.1,Trinity_GG_24674_c0_g1_i1,blat.proc3825170.chain_1950,blat.proc3825170.chain_1951	4
scaffold_26	retained_intron	9044430	9044639	+	asmbl_35201	none	Trinity_GG_33066_c0_g1_i2,blat.proc3825178.chain_1594	2	STRG.28471.1,STRG.28471.2,Trinity_GG_33066_c0_g1_i3,blat.proc3825178.chain_1595	4
scaffold_28	starts_in_intron	584717	584717	-	asmbl_37921	none	blat.proc3825162.chain_2416	1	STRG.29280.1,blat.proc3825162.chain_2415	2
scaffold_21	alternate_exon	10121652	10123098	+	asmbl_28860,asmbl_28863	none	STRG.24477.2,STRG.24477.3,blat.proc3825176.chain_1626	3	STRG.24477.1,blat.proc3825176.chain_1624	2
scaffold_4	alt_donor	17122978	17122979	-	asmbl_43252,asmbl_43254	none	STRG.5310.3,STRG.5310.4,Trinity_GG_2967_c0_g1_i2	3	STRG.5310.1,STRG.5310.2,Trinity_GG_2967_c0_g1_i1	3
scaffold_4	starts_in_intron	4015978	4015978	+	asmbl_41209	none	Trinity_GG_19709_c0_g1_i2,blat.proc3825166.chain_763	2	STRG.4306.1,blat.proc3825166.chain_762	2
scaffold_9	spliced_intron	17469882	17470146	-	asmbl_55646	none	STRG.11840.3,blat.proc3825154.chain_346	2	STRG.11840.1,blat.proc3825154.chain_348	2
scaffold_2	spliced_intron	44017	44055	-	asmbl_22785	none	STRG.1502.2	1	STRG.1502.1	1
scaffold_13	ends_in_intron	2857893	2857893	-	asmbl_9485	none	blat.proc3825156.chain_478	1	STRG.15589.1,blat.proc3825156.chain_476,blat.proc3825156.chain_477,blat.proc3825156.chain_479	4
scaffold_11	spliced_intron	15687955	15688379	-	asmbl_7211	none	STRG.14309.1,blat.proc3825154.chain_2851	2	Trinity_GG_8003_c0_g1_i1,Trinity_GG_8003_c0_g1_i3,blat.proc3825154.chain_2849,blat.proc3825154.chain_2850	4
scaffold_6	spliced_intron	8172579	8172708	-	asmbl_48541,asmbl_48542	none	blat.proc3825152.chain_87,blat.proc3825152.chain_93	2	Trinity_GG_4351_c0_g1_i7,blat.proc3825152.chain_84,blat.proc3825152.chain_89	3
scaffold_8	starts_in_intron	18541826	18541826	+	asmbl_53565	none	Trinity_GG_23268_c0_g1_i2,blat.proc3825168.chain_3273	2	STRG.10751.2,STRG.10751.3,Trinity_GG_23268_c0_g1_i3,blat.proc3825168.chain_3270,blat.proc3825168.chain_3271	5
scaffold_5	alt_acceptor	6664179	6664180	-	asmbl_44128,asmbl_44129	none	STRG.6073.1,STRG.6073.2	2	STRG.6073.3	1
scaffold_12	ends_in_intron	7222529	7222529	+	asmbl_7730	none	blat.proc3825170.chain_3255	1	STRG.14792.1,blat.proc3825170.chain_3254	2
scaffold_7	alternate_exon	1227349	1231431	+	asmbl_49594,asmbl_49602,asmbl_49603,asmbl_49605,asmbl_49606	none	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6	5	Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c4_g1_i1,blat.proc3825168.chain_1079,blat.proc3825168.chain_1084	4
scaffold_22	alternate_exon	8395009	8395045	+	asmbl_30275	none	STRG.25191.1	1	STRG.25191.3,Trinity_GG_31264_c1_g1_i1,blat.proc3825176.chain_2317,blat.proc3825176.chain_2318	4
scaffold_6	spliced_intron	8173890	8174001	-	asmbl_48537,asmbl_48538,asmbl_48542,asmbl_48544,asmbl_48545	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_91,blat.proc3825152.chain_93	6	Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_92,blat.proc3825152.chain_95	3
scaffold_23	alternate_exon	4228479	4229523	-	asmbl_30847,asmbl_30850,asmbl_30853	none	STRG.25839.1,STRG.25839.5,blat.proc3825160.chain_2987,blat.proc3825160.chain_2989	4	STRG.25839.3,blat.proc3825160.chain_2986,blat.proc3825160.chain_2988	3
scaffold_5	alt_acceptor	3630366	3630367	+	asmbl_45230	none	STRG.5836.1	1	STRG.5836.2	1
scaffold_3	starts_in_intron	1753784	1753784	+	asmbl_39874	none	blat.proc3825164.chain_3236	1	STRG.2993.1,blat.proc3825164.chain_3237,blat.proc3825164.chain_3238,blat.proc3825164.chain_3239	4
scaffold_5	starts_in_intron	10801343	10801343	+	asmbl_45693,asmbl_45695	none	STRG.6357.2,blat.proc3825166.chain_2568,blat.proc3825166.chain_2570	3	STRG.6357.1,blat.proc3825166.chain_2569	2
scaffold_17	spliced_intron	5124487	5126010	-	asmbl_17918	none	blat.proc3825158.chain_1306	1	STRG.20241.1	1
scaffold_28	alt_acceptor	5851960	5851961	+	asmbl_37607	none	STRG.29721.2,Trinity_GG_33776_c0_g1_i1,blat.proc3825178.chain_2885	3	STRG.29721.1	1
scaffold_6	spliced_intron	9909894	9910383	+	asmbl_47248	none	STRG.7832.1	1	STRG.7832.3,Trinity_GG_21599_c1_g1_i1,blat.proc3825168.chain_259	3
scaffold_24	retained_intron	4328698	4328844	+	asmbl_32194	none	blat.proc3825176.chain_3476	1	STRG.26597.1,STRG.26597.2	2
scaffold_10	starts_in_intron	11873582	11873582	+	asmbl_3500	none	Trinity_GG_24361_c0_g1_i3,blat.proc3825170.chain_1386	2	STRG.12825.1,blat.proc3825170.chain_1387	2
scaffold_11	spliced_intron	11069659	11070082	-	asmbl_7015	none	STRG.14073.1,blat.proc3825154.chain_2628	2	blat.proc3825154.chain_2627	1
scaffold_14	alt_acceptor	15692314	15692315	-	asmbl_13739,asmbl_13740	none	STRG.17812.1,STRG.17812.2,blat.proc3825156.chain_2578	3	blat.proc3825156.chain_2579	1
scaffold_12	ends_in_intron	7662604	7662604	+	asmbl_7784	none	blat.proc3825170.chain_3403	1	STRG.14851.1,STRG.14851.2,blat.proc3825170.chain_3405,blat.proc3825170.chain_3406	4
scaffold_17	spliced_intron	8318266	8318623	+	asmbl_18969	none	STRG.20456.3	1	blat.proc3825174.chain_1203,blat.proc3825174.chain_1205	2
scaffold_22	ends_in_intron	4586701	4586701	-	asmbl_29270,asmbl_29271	none	STRG.24892.1,STRG.24892.2,blat.proc3825160.chain_2058,blat.proc3825160.chain_2059	4	blat.proc3825160.chain_2060	1
scaffold_2	retained_intron	15455311	15455409	+	asmbl_25044,asmbl_25045	none	blat.proc3825164.chain_2805,blat.proc3825164.chain_2812	2	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811	9
scaffold_23	alternate_exon	10204072	10205751	-	asmbl_31140	none	STRG.26231.2	1	STRG.26231.3	1
scaffold_12	starts_in_intron	3797435	3797435	-	asmbl_8372	none	blat.proc3825154.chain_3009	1	STRG.14583.1,blat.proc3825154.chain_3010	2
scaffold_13	spliced_intron	4601282	4601369	-	asmbl_9648,asmbl_9649,asmbl_9650,asmbl_9651,asmbl_9652	none	STRG.15796.1,STRG.15796.2,blat.proc3825156.chain_662,blat.proc3825156.chain_666,blat.proc3825156.chain_670	5	Trinity_GG_8874_c0_g1_i17,blat.proc3825156.chain_664	2
scaffold_26	starts_in_intron	10097847	10097847	-	asmbl_35808	none	blat.proc3825162.chain_1718	1	STRG.28531.1,STRG.28531.2,blat.proc3825162.chain_1716,blat.proc3825162.chain_1717	4
scaffold_24	skipped_exon	4375751	4376931	+	asmbl_32199	none	STRG.26598.2	1	STRG.26598.1,Trinity_GG_31980_c1_g1_i1,blat.proc3825176.chain_3483	3
scaffold_18	skipped_exon	1512768	1513566	+	asmbl_20358	none	STRG.21044.1,blat.proc3825174.chain_1986	2	STRG.21044.3	1
scaffold_17	ends_in_intron	6821012	6821012	-	asmbl_17990	none	blat.proc3825158.chain_1387	1	STRG.20345.3,blat.proc3825158.chain_1392,blat.proc3825158.chain_1393	3
scaffold_7	alternate_exon	7191813	7191925	+	asmbl_49905	none	STRG.8983.2,blat.proc3825168.chain_1477	2	STRG.8983.1,blat.proc3825168.chain_1476	2
scaffold_25	retained_intron	9450215	9450348	+	asmbl_33819	none	blat.proc3825178.chain_801	1	STRG.27758.1,STRG.27758.2,STRG.27758.3,blat.proc3825178.chain_803,blat.proc3825178.chain_804	5
scaffold_1	retained_intron	5962385	5962489	-	asmbl_304	none	Trinity_GG_210_c0_g1_i1,blat.proc3825148.chain_362	2	STRG.399.1,blat.proc3825148.chain_363	2
scaffold_27	spliced_intron	2903073	2903179	-	asmbl_36868	none	STRG.28776.1,Trinity_GG_16082_c0_g1_i2,blat.proc3825162.chain_1966	3	STRG.28776.3,blat.proc3825162.chain_1965	2
scaffold_27	skipped_exon	7192145	7194416	-	asmbl_37093	none	STRG.29085.2,blat.proc3825162.chain_2223	2	STRG.29085.1,blat.proc3825162.chain_2224	2
scaffold_2	skipped_exon	14548735	14549730	+	asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24961	none	STRG.2464.1,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	7	STRG.2464.2,blat.proc3825164.chain_2653,blat.proc3825164.chain_2658	3
scaffold_23	spliced_intron	4899125	4899400	+	asmbl_31532,asmbl_31533,asmbl_31537	none	STRG.25884.1,STRG.25884.4,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817	6	STRG.25884.3	1
scaffold_2	retained_intron	14132199	14132279	-	asmbl_23559	none	blat.proc3825148.chain_2401	1	STRG.2408.1,blat.proc3825148.chain_2402,blat.proc3825148.chain_2403	3
scaffold_21	retained_exon	4663693	4663832	-	asmbl_27581	none	STRG.24011.2	1	STRG.24011.1	1
scaffold_6	alt_acceptor	13273381	13273382	+	asmbl_47516	none	STRG.8090.3	1	STRG.8090.2,STRG.8090.4,STRG.8090.5,blat.proc3825168.chain_517,blat.proc3825168.chain_518	5
scaffold_13	alt_acceptor	738999	739000	+	asmbl_10516	none	STRG.15461.3	1	STRG.15461.1,blat.proc3825172.chain_193	2
scaffold_20	spliced_intron	11438117	11438285	+	asmbl_27046	none	STRG.23652.3	1	STRG.23652.1,STRG.23652.2,blat.proc3825176.chain_818,blat.proc3825176.chain_819	4
scaffold_2	alt_acceptor	9241512	9241513	-	asmbl_23370	none	STRG.2167.2	1	STRG.2167.1,blat.proc3825148.chain_2208	2
scaffold_4	spliced_intron	16481131	16481263	-	asmbl_43180	none	blat.proc3825150.chain_1405	1	STRG.5225.2,blat.proc3825150.chain_1406	2
scaffold_15	starts_in_intron	15111382	15111382	+	asmbl_15714	none	Trinity_GG_27671_c0_g1_i1,blat.proc3825172.chain_3515	2	STRG.18903.1,blat.proc3825172.chain_3516	2
scaffold_5	retained_intron	13022943	13023169	+	asmbl_45839	none	STRG.6532.2,blat.proc3825166.chain_2715	2	STRG.6532.1,blat.proc3825166.chain_2716	2
scaffold_24	alternate_exon	4319255	4319411	+	asmbl_32190,asmbl_32191	none	Trinity_GG_31987_c0_g1_i1,Trinity_GG_31987_c0_g1_i2,blat.proc3825176.chain_3494,blat.proc3825176.chain_3495	4	STRG.26600.3	1
scaffold_3	ends_in_intron	15764337	15764337	-	asmbl_39446,asmbl_39447	none	Trinity_GG_2125_c0_g1_i2,blat.proc3825150.chain_43,blat.proc3825150.chain_44	3	STRG.3852.1	1
scaffold_1	starts_in_intron	7207847	7207847	+	asmbl_1892	none	blat.proc3825164.chain_675	1	STRG.515.1,blat.proc3825164.chain_673,blat.proc3825164.chain_674	3
scaffold_14	alt_donor	866155	866156	+	asmbl_11775	none	blat.proc3825172.chain_1525	1	STRG.16759.1,STRG.16759.2,STRG.16759.3,Trinity_GG_26529_c0_g1_i2,blat.proc3825172.chain_1524	5
scaffold_4	spliced_intron	4691873	4692128	+	asmbl_41296,asmbl_41297,asmbl_41298,asmbl_41300,asmbl_41301,asmbl_41303	none	STRG.4379.1,blat.proc3825166.chain_813,blat.proc3825166.chain_814,blat.proc3825166.chain_816,blat.proc3825166.chain_818,blat.proc3825166.chain_819	6	blat.proc3825166.chain_817,blat.proc3825166.chain_820	2
scaffold_22	alternate_exon	524807	525364	+	asmbl_29862,asmbl_29864	none	STRG.24700.1,blat.proc3825176.chain_1741,blat.proc3825176.chain_1742	3	blat.proc3825176.chain_1743	1
scaffold_3	ends_in_intron	11443129	11443129	-	asmbl_39162	none	Trinity_GG_1942_c0_g1_i2,blat.proc3825148.chain_3447	2	STRG.3575.1	1
scaffold_27	starts_in_intron	1986494	1986494	+	asmbl_36061	none	Trinity_GG_33184_c1_g1_i2	1	STRG.28684.1,STRG.28684.2	2
scaffold_9	alt_acceptor	6405821	6405822	+	asmbl_54093,asmbl_54094	none	STRG.11175.1,STRG.11175.3	2	STRG.11175.2,Trinity_GG_23514_c0_g1_i1,Trinity_GG_23514_c0_g1_i3,blat.proc3825168.chain_3671,blat.proc3825168.chain_3672,blat.proc3825168.chain_3673	6
scaffold_9	retained_intron	6902292	6902430	-	asmbl_55089,asmbl_55091,asmbl_55092	none	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3394	4	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3389,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	5
scaffold_8	retained_intron	11243691	11244097	+	asmbl_53203	none	Trinity_GG_23065_c0_g1_i2,Trinity_GG_23065_c0_g1_i3,blat.proc3825168.chain_2904,blat.proc3825168.chain_2906	4	STRG.10332.1,blat.proc3825168.chain_2905	2
scaffold_20	spliced_intron	1490365	1490400	+	asmbl_26417,asmbl_26419	none	STRG.22869.1,STRG.22869.6	2	STRG.22869.4,Trinity_GG_29893_c1_g1_i3,Trinity_GG_29893_c1_g1_i4,blat.proc3825176.chain_24,blat.proc3825176.chain_25,blat.proc3825176.chain_26	6
scaffold_14	skipped_exon	15583680	15584766	+	asmbl_12629	none	STRG.17811.6	1	STRG.17811.1,STRG.17811.2,STRG.17811.7	3
scaffold_7	alt_acceptor	809102	809103	+	asmbl_49562,asmbl_49566	none	STRG.8623.1,blat.proc3825168.chain_1127,blat.proc3825168.chain_1130	3	STRG.8623.2,blat.proc3825168.chain_1125,blat.proc3825168.chain_1129	3
scaffold_21	skipped_exon	692017	694234	+	asmbl_28284	none	STRG.23756.2	1	STRG.23756.1	1
scaffold_18	spliced_intron	2779711	2779799	-	asmbl_19740	none	STRG.21139.1,blat.proc3825158.chain_2032	2	STRG.21139.2,blat.proc3825158.chain_2031	2
scaffold_4	skipped_exon	306262	307220	-	asmbl_42326	none	STRG.4129.1,Trinity_GG_2302_c0_g1_i2,blat.proc3825150.chain_361	3	STRG.4129.3,Trinity_GG_2302_c0_g1_i1,blat.proc3825150.chain_362	3
scaffold_8	retained_intron	16141006	16141091	-	asmbl_52365	none	blat.proc3825152.chain_2829	1	STRG.10604.4,blat.proc3825152.chain_2831,blat.proc3825152.chain_2832,blat.proc3825152.chain_2833	4
scaffold_19	retained_intron	12437236	12437460	+	asmbl_21801,asmbl_21802	none	blat.proc3825174.chain_3596,blat.proc3825174.chain_3597	2	STRG.22571.1,blat.proc3825174.chain_3594,blat.proc3825174.chain_3598	3
scaffold_14	alt_donor	2464869	2464870	-	asmbl_12954,asmbl_12955	none	STRG.16856.1,STRG.16856.3	2	STRG.16856.2,blat.proc3825156.chain_1687	2
scaffold_17	alternate_exon	6822984	6829390	-	asmbl_17994	none	blat.proc3825158.chain_1393	1	STRG.20345.3,Trinity_GG_11448_c1_g1_i2,blat.proc3825158.chain_1387,blat.proc3825158.chain_1397	4
scaffold_17	alt_donor	2768312	2768313	-	asmbl_17786	none	STRG.20085.2	1	STRG.20085.1,blat.proc3825158.chain_1126	2
scaffold_14	starts_in_intron	8349344	8349344	-	asmbl_13291	none	STRG.17268.1,blat.proc3825156.chain_2077	2	STRG.17268.2	1
scaffold_10	ends_in_intron	8618059	8618059	-	asmbl_4607	none	Trinity_GG_7054_c0_g1_i2,blat.proc3825154.chain_1227	2	STRG.12613.1	1
scaffold_8	alt_donor	17747498	17747499	-	asmbl_52490	none	STRG.10690.1	1	STRG.10690.2	1
scaffold_13	retained_intron	3021498	3021692	-	asmbl_9505	none	STRG.15603.1	1	STRG.15603.2,blat.proc3825156.chain_503	2
scaffold_9	retained_exon	644077	644163	+	asmbl_53783	none	STRG.10793.2	1	STRG.10793.1,blat.proc3825168.chain_3345	2
scaffold_19	starts_in_intron	8418069	8418069	+	asmbl_21525	none	STRG.22304.2,Trinity_GG_29586_c0_g1_i2,blat.proc3825174.chain_3218	3	STRG.22304.1,blat.proc3825174.chain_3219	2
scaffold_14	alternate_exon	4154105	4154261	+	asmbl_11981	none	Trinity_GG_26617_c0_g1_i2	1	STRG.16971.1,STRG.16971.3	2
scaffold_12	starts_in_intron	4785470	4785470	-	asmbl_8449	none	blat.proc3825154.chain_3146	1	STRG.14660.2,STRG.14660.3,STRG.14660.4,blat.proc3825154.chain_3145,blat.proc3825154.chain_3147,blat.proc3825154.chain_3148,blat.proc3825154.chain_3150,blat.proc3825154.chain_3153	8
scaffold_3	alt_donor	18321151	18321152	-	asmbl_39609	none	STRG.4034.2	1	STRG.4034.1	1
scaffold_16	ends_in_intron	11335407	11335407	+	asmbl_16579	none	STRG.19664.2	1	blat.proc3825174.chain_604	1
scaffold_19	spliced_intron	678886	678963	+	asmbl_21199	none	STRG.21850.1,blat.proc3825174.chain_2900	2	Trinity_GG_29401_c0_g1_i4,blat.proc3825174.chain_2898	2
scaffold_7	retained_intron	9311355	9311554	+	asmbl_50075	none	Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669	2	STRG.9144.1,Trinity_GG_22395_c0_g1_i2,Trinity_GG_22395_c0_g1_i3,blat.proc3825168.chain_1670,blat.proc3825168.chain_1671	5
scaffold_13	spliced_intron	534832	534931	-	asmbl_9359,asmbl_9362,asmbl_9363	none	STRG.15447.2,STRG.15447.3,Trinity_GG_8674_c0_g1_i3,blat.proc3825156.chain_325	4	Trinity_GG_8674_c0_g1_i6,blat.proc3825156.chain_328	2
scaffold_12	spliced_intron	3352547	3352645	+	asmbl_7554	none	STRG.14559.1	1	Trinity_GG_25354_c0_g1_i2	1
scaffold_13	spliced_intron	8357971	8358153	+	asmbl_11132	none	STRG.16130.2	1	STRG.16130.1,STRG.16130.3,STRG.16130.4,STRG.16130.5,Trinity_GG_26184_c0_g1_i5,Trinity_GG_26184_c1_g1_i1,blat.proc3825172.chain_914,blat.proc3825172.chain_915,blat.proc3825172.chain_917,blat.proc3825172.chain_918,blat.proc3825172.chain_919,blat.proc3825172.chain_920	12
scaffold_70	alt_donor	7944	7945	-	asmbl_51596,asmbl_51597	none	STRG.30108.2,Trinity_GG_16893_c0_g1_i1,blat.proc3825162.chain_3271,blat.proc3825162.chain_3272	4	STRG.30108.1,blat.proc3825178.chain_3226	2
scaffold_17	skipped_exon	9971511	9974021	+	asmbl_19144	none	blat.proc3825174.chain_1488	1	STRG.20615.2,STRG.20615.3,blat.proc3825174.chain_1489	3
scaffold_7	starts_in_intron	1315754	1315754	-	asmbl_50713	none	blat.proc3825152.chain_1043	1	STRG.8631.1,blat.proc3825152.chain_1044	2
scaffold_22	retained_exon	4287918	4287946	-	asmbl_29239,asmbl_29242	none	STRG.24854.1,blat.proc3825160.chain_2083,blat.proc3825160.chain_2084	3	STRG.24854.3	1
scaffold_22	alt_acceptor	7573315	7573316	+	asmbl_30194	none	STRG.25095.2,blat.proc3825176.chain_2211	2	STRG.25095.1,blat.proc3825176.chain_2212	2
scaffold_9	retained_intron	17849137	17851107	+	asmbl_54653	none	STRG.11873.3,Trinity_GG_23881_c1_g1_i1,Trinity_GG_23881_c2_g1_i1,blat.proc3825170.chain_576,blat.proc3825170.chain_577	5	STRG.11873.1,STRG.11873.2	2
scaffold_4	ends_in_intron	14571151	14571151	+	asmbl_41891	none	blat.proc3825166.chain_1434	1	STRG.5073.1,STRG.5073.2,blat.proc3825166.chain_1431,blat.proc3825166.chain_1432	4
scaffold_21	spliced_intron	7507874	7507982	-	asmbl_27835,asmbl_27836	none	STRG.24283.1,STRG.24283.2,blat.proc3825160.chain_1432	3	Trinity_GG_13549_c0_g1_i1,blat.proc3825160.chain_1433	2
scaffold_21	spliced_intron	1654469	1654866	+	asmbl_28346,asmbl_28351	none	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058	4	Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1059	3
scaffold_13	spliced_intron	7109506	7110796	+	asmbl_11011	none	STRG.16010.3,blat.proc3825172.chain_781	2	STRG.16010.1,Trinity_GG_26113_c0_g1_i5,Trinity_GG_26113_c0_g1_i9,blat.proc3825172.chain_778	4
scaffold_1	ends_in_intron	20989617	20989617	+	asmbl_2669	none	STRG.1435.1	1	STRG.1435.2,Trinity_GG_18143_c0_g1_i3,blat.proc3825164.chain_1565	3
scaffold_2	alternate_exon	6086464	6086639	-	asmbl_23172	none	STRG.1980.3,Trinity_GG_1051_c0_g1_i6,blat.proc3825148.chain_1867	3	STRG.1980.1,Trinity_GG_1051_c0_g1_i2,blat.proc3825148.chain_1868	3
scaffold_20	spliced_intron	12076152	12076237	-	asmbl_26214,asmbl_26215,asmbl_26217	none	STRG.23706.1,Trinity_GG_13163_c0_g1_i1,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_689	5	blat.proc3825160.chain_685,blat.proc3825160.chain_688	2
scaffold_14	starts_in_intron	15329033	15329033	+	asmbl_12590	none	Trinity_GG_27068_c0_g1_i2,blat.proc3825172.chain_2472	2	STRG.17760.1,blat.proc3825172.chain_2471	2
scaffold_22	alt_acceptor	10059197	10059198	+	asmbl_30343	none	STRG.25359.2	1	STRG.25359.1,blat.proc3825176.chain_2372	2
scaffold_16	alt_acceptor	4095746	4095747	+	asmbl_16169,asmbl_16174	none	STRG.19226.1,STRG.19226.2	2	blat.proc3825174.chain_61	1
scaffold_22	retained_intron	322655	323132	+	asmbl_29840,asmbl_29843	none	STRG.24686.2,blat.proc3825176.chain_1817	2	STRG.24686.3,blat.proc3825176.chain_1816	2
scaffold_10	spliced_intron	7672393	7673371	+	asmbl_3294	none	STRG.12556.3	1	STRG.12556.2,Trinity_GG_24268_c0_g1_i5,blat.proc3825170.chain_1221	3
scaffold_1	alternate_exon	7115059	7115245	-	asmbl_412	none	STRG.508.1,blat.proc3825148.chain_475	2	STRG.508.2	1
scaffold_13	spliced_intron	9535986	9536192	-	asmbl_10033	none	STRG.16216.4	1	STRG.16216.1,STRG.16216.2,blat.proc3825156.chain_1123	3
scaffold_2	starts_in_intron	3656369	3656369	+	asmbl_24298	none	blat.proc3825164.chain_1926	1	STRG.1795.1,blat.proc3825164.chain_1925	2
scaffold_2	skipped_exon	888658	889898	+	asmbl_24129	none	blat.proc3825164.chain_1712	1	blat.proc3825164.chain_1714	1
scaffold_8	alt_donor	12719858	12719859	-	asmbl_52220	none	STRG.10449.2,blat.proc3825152.chain_2668	2	STRG.10449.1	1
scaffold_2	starts_in_intron	4583738	4583738	+	asmbl_24361	none	Trinity_GG_18341_c0_g3_i1,blat.proc3825164.chain_1976	2	STRG.1886.1,STRG.1886.2,STRG.1886.3	3
scaffold_7	spliced_intron	15272158	15272574	+	asmbl_50427,asmbl_50428,asmbl_50429,asmbl_50431,asmbl_50434,asmbl_50435	none	STRG.9546.1,blat.proc3825168.chain_2120,blat.proc3825168.chain_2121,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2126	6	STRG.9546.3,STRG.9546.4,blat.proc3825168.chain_2125	3
scaffold_1	spliced_intron	14411093	14411191	-	asmbl_913	none	STRG.1039.1,blat.proc3825148.chain_1062	2	blat.proc3825148.chain_1061	1
scaffold_18	skipped_exon	7169403	7169698	+	asmbl_20710	none	Trinity_GG_29107_c0_g1_i4,blat.proc3825174.chain_2389	2	STRG.21415.1,Trinity_GG_29107_c0_g1_i3,blat.proc3825174.chain_2388	3
scaffold_3	ends_in_intron	11300151	11300151	+	asmbl_40343	none	blat.proc3825166.chain_93	1	STRG.3556.1,STRG.3556.2,blat.proc3825166.chain_92,blat.proc3825166.chain_94	4
scaffold_28	alternate_exon	9268392	9268493	+	asmbl_37778	none	STRG.29970.1,Trinity_GG_33883_c0_g1_i2,blat.proc3825178.chain_3088	3	STRG.29970.3,Trinity_GG_33883_c0_g1_i1,blat.proc3825178.chain_3087	3
scaffold_1	alt_donor	6127194	6127195	-	asmbl_317,asmbl_318	none	STRG.415.1,STRG.415.2,blat.proc3825148.chain_392	3	blat.proc3825148.chain_391	1
scaffold_11	spliced_intron	176324	176605	+	asmbl_5266	none	blat.proc3825170.chain_1810	1	Trinity_GG_24602_c0_g1_i3,blat.proc3825170.chain_1809,blat.proc3825170.chain_1811,blat.proc3825170.chain_1812	4
scaffold_23	retained_intron	7004912	7004953	-	asmbl_31004,asmbl_31005,asmbl_31007,asmbl_31008	none	STRG.26025.2,STRG.26025.3,STRG.26025.5,Trinity_GG_14528_c0_g1_i2,blat.proc3825160.chain_3122,blat.proc3825160.chain_3123	6	STRG.26025.4	1
scaffold_3	ends_in_intron	13094410	13094410	+	asmbl_40419	none	blat.proc3825166.chain_180	1	STRG.3676.1	1
scaffold_6	retained_intron	14511822	14511873	+	asmbl_47621	none	Trinity_GG_21838_c0_g1_i2,blat.proc3825168.chain_712	2	STRG.8218.1	1
scaffold_13	starts_in_intron	12243177	12243177	-	asmbl_10127	none	blat.proc3825156.chain_1219	1	STRG.16353.1,STRG.16353.2,STRG.16353.3,blat.proc3825156.chain_1216,blat.proc3825156.chain_1217,blat.proc3825156.chain_1218	6
scaffold_947	alt_acceptor	3720	3721	+	asmbl_55847	none	STRG.30515.2,blat.proc3825178.chain_3534	2	STRG.30515.1	1
scaffold_20	alt_acceptor	7797218	7797219	-	asmbl_25917	none	STRG.23325.1	1	STRG.23325.2	1
scaffold_19	spliced_intron	11458491	11458642	-	asmbl_22387,asmbl_22388,asmbl_22389,asmbl_22390	none	STRG.22479.1,blat.proc3825158.chain_3198,blat.proc3825158.chain_3199,blat.proc3825158.chain_3200,blat.proc3825158.chain_3201	5	Trinity_GG_12484_c0_g1_i4,blat.proc3825158.chain_3197	2
scaffold_16	alt_acceptor	314216	314217	-	asmbl_16851,asmbl_16853	none	STRG.19022.2,STRG.19022.4	2	STRG.19022.1,STRG.19022.3	2
scaffold_1	ends_in_intron	12546779	12546779	-	asmbl_733	none	blat.proc3825148.chain_802	1	STRG.870.1,STRG.870.2,blat.proc3825148.chain_801	3
scaffold_10	alternate_exon	949230	949305	+	asmbl_2893	none	Trinity_GG_23961_c0_g1_i4,blat.proc3825170.chain_708	2	STRG.11975.1,Trinity_GG_23961_c0_g1_i1,Trinity_GG_23961_c0_g1_i3,blat.proc3825170.chain_705,blat.proc3825170.chain_706	5
scaffold_14	alternate_exon	6772942	6773024	-	asmbl_13158,asmbl_13160	none	STRG.17120.2,blat.proc3825156.chain_1934	2	STRG.17120.1,blat.proc3825156.chain_1932,blat.proc3825156.chain_1933	3
scaffold_24	starts_in_intron	5937486	5937486	+	asmbl_32254	none	Trinity_GG_32084_c3_g1_i1,blat.proc3825176.chain_3684	2	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	13
scaffold_16	retained_exon	2215860	2215961	+	asmbl_16123	none	STRG.19123.1,Trinity_GG_27776_c0_g1_i2,blat.proc3825172.chain_3744	3	STRG.19123.2	1
scaffold_10	retained_intron	16531561	16531803	+	asmbl_3719,asmbl_3723	none	STRG.13128.3,blat.proc3825170.chain_1651	2	STRG.13128.1,blat.proc3825170.chain_1652,blat.proc3825170.chain_1653	3
scaffold_20	alt_acceptor	6281016	6281017	+	asmbl_26657	none	STRG.23227.1	1	STRG.23227.2	1
scaffold_1	retained_intron	6284662	6285080	-	asmbl_334	none	STRG.423.6,Trinity_GG_229_c0_g1_i11,blat.proc3825148.chain_408	3	STRG.423.1,STRG.423.5,Trinity_GG_229_c0_g1_i9,blat.proc3825148.chain_412,blat.proc3825148.chain_417,blat.proc3825148.chain_418	6
scaffold_19	starts_in_intron	1106991	1106991	-	asmbl_22031	none	Trinity_GG_12207_c0_g2_i1,blat.proc3825158.chain_2735	2	STRG.21903.1,STRG.21903.4	2
scaffold_1	ends_in_intron	915122	915122	+	asmbl_1438	none	Trinity_GG_17357_c0_g1_i2,blat.proc3825164.chain_156	2	STRG.46.1,Trinity_GG_17357_c0_g1_i1,blat.proc3825164.chain_157	3
scaffold_2	spliced_intron	9322557	9323761	-	asmbl_23385	none	blat.proc3825148.chain_2158	1	STRG.2178.3	1
scaffold_15	retained_intron	9854011	9854120	-	asmbl_14414,asmbl_14415,asmbl_14416	none	STRG.18501.1,STRG.18501.3,STRG.18501.4,Trinity_GG_10363_c1_g1_i1,blat.proc3825156.chain_3302	5	STRG.18501.2	1
scaffold_15	starts_in_intron	12404491	12404491	-	asmbl_14578	none	Trinity_GG_10453_c0_g1_i1,blat.proc3825156.chain_3471	2	STRG.18692.1,Trinity_GG_10453_c0_g1_i2,blat.proc3825156.chain_3472	3
scaffold_15	alt_donor	15906849	15906850	-	asmbl_14809	none	STRG.18975.2	1	STRG.18975.1,blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_64	4
scaffold_27	spliced_intron	5686546	5686785	+	asmbl_36359,asmbl_36360	none	STRG.28977.3,blat.proc3825178.chain_2114,blat.proc3825178.chain_2115	3	STRG.28977.1,STRG.28977.4,STRG.28977.5,Trinity_GG_33317_c0_g1_i3,blat.proc3825178.chain_2111,blat.proc3825178.chain_2113	6
scaffold_1	starts_in_intron	12396838	12396838	+	asmbl_2204	none	Trinity_GG_17794_c0_g1_i2,blat.proc3825164.chain_933	2	STRG.852.1,blat.proc3825164.chain_932	2
scaffold_25	retained_intron	8707410	8707661	+	asmbl_33760	none	blat.proc3825178.chain_767	1	STRG.27702.2,STRG.27702.3,blat.proc3825178.chain_762,blat.proc3825178.chain_766	4
scaffold_4	retained_intron	14679968	14680368	-	asmbl_43076	none	blat.proc3825150.chain_1225,blat.proc3825150.chain_1228	2	STRG.5102.2,blat.proc3825150.chain_1226	2
scaffold_20	ends_in_intron	10677140	10677140	+	asmbl_26979	none	STRG.23604.3	1	STRG.23604.1,STRG.23604.2,blat.proc3825176.chain_785	3
scaffold_4	retained_intron	6705014	6705099	+	asmbl_41422	none	STRG.4531.1,blat.proc3825166.chain_909	2	STRG.4531.2	1
scaffold_28	alternate_exon	547607	547866	-	asmbl_37914	none	STRG.29272.1,Trinity_GG_16372_c0_g1_i1,blat.proc3825162.chain_2407	3	STRG.29272.2	1
scaffold_6	ends_in_intron	13222571	13222571	+	asmbl_47502	none	blat.proc3825168.chain_581	1	STRG.8084.1,STRG.8084.2,blat.proc3825168.chain_571,blat.proc3825168.chain_575,blat.proc3825168.chain_576	5
scaffold_1	retained_intron	5738505	5739159	+	asmbl_1779,asmbl_1780,asmbl_1782	none	blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_529	3	blat.proc3825164.chain_528	1
scaffold_28	spliced_intron	5014513	5014595	+	asmbl_37555,asmbl_37556,asmbl_37557,asmbl_37560,asmbl_37561	none	STRG.29651.1,STRG.29651.2,Trinity_GG_33747_c0_g1_i4,Trinity_GG_33747_c0_g2_i4,blat.proc3825178.chain_2828,blat.proc3825178.chain_2832,blat.proc3825178.chain_2833,blat.proc3825178.chain_2834	8	Trinity_GG_33747_c0_g1_i1,blat.proc3825178.chain_2829,blat.proc3825178.chain_2830	3
scaffold_3	skipped_exon	8998706	8999961	-	asmbl_39046,asmbl_39050	none	blat.proc3825148.chain_3317,blat.proc3825148.chain_3319,blat.proc3825148.chain_3320	3	STRG.3431.1,STRG.3431.2	2
scaffold_17	spliced_intron	1292002	1292436	-	asmbl_17680	none	STRG.19964.4,blat.proc3825158.chain_975	2	STRG.19964.6,blat.proc3825158.chain_970	2
scaffold_21	alternate_exon	5778309	5779864	-	asmbl_27691,asmbl_27692,asmbl_27694	none	STRG.24114.1,STRG.24114.2,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199	4	STRG.24114.3,blat.proc3825160.chain_1200	2
scaffold_28	alt_donor	5257666	5257667	-	asmbl_38281	none	blat.proc3825162.chain_2872	1	STRG.29682.1,STRG.29682.2,blat.proc3825162.chain_2871	3
scaffold_2	alternate_exon	5903152	5904624	-	asmbl_23163	none	STRG.1974.2,blat.proc3825148.chain_1908	2	STRG.1974.1,Trinity_GG_1069_c0_g1_i2,blat.proc3825148.chain_1909	3
scaffold_7	alt_acceptor	4915756	4915757	+	asmbl_49762	none	STRG.8836.3	1	STRG.8836.4	1
scaffold_12	starts_in_intron	14290670	14290670	-	asmbl_9004,asmbl_9005	none	STRG.15271.1,blat.proc3825156.chain_64,blat.proc3825156.chain_65	3	STRG.15271.2	1
scaffold_15	retained_intron	15449482	15449702	+	asmbl_15786	none	Trinity_GG_27706_c0_g1_i3,Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3621,blat.proc3825172.chain_3626	4	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,blat.proc3825172.chain_3619,blat.proc3825172.chain_3624	5
scaffold_22	alt_donor	11641428	11641429	-	asmbl_29688	none	STRG.25513.1	1	STRG.25513.2,STRG.25513.4,Trinity_GG_14246_c0_g1_i1,blat.proc3825160.chain_2631	4
scaffold_5	retained_exon	15418254	15418370	-	asmbl_44664	none	STRG.6728.1,blat.proc3825150.chain_2880	2	STRG.6728.2,blat.proc3825150.chain_2878	2
scaffold_7	alt_donor	2310185	2310186	+	asmbl_49631,asmbl_49633	none	STRG.8670.1,STRG.8670.3,Trinity_GG_22081_c0_g1_i1,blat.proc3825168.chain_1166	4	STRG.8670.2	1
scaffold_17	alternate_exon	8649623	8650783	-	asmbl_18110	none	STRG.20484.2	1	STRG.20484.1	1
scaffold_19	starts_in_intron	12105004	12105004	+	asmbl_21742	none	blat.proc3825174.chain_3496	1	STRG.22538.1,blat.proc3825174.chain_3495	2
scaffold_5	spliced_intron	6584076	6584215	-	asmbl_44105,asmbl_44106	none	blat.proc3825150.chain_2258,blat.proc3825150.chain_2261	2	blat.proc3825150.chain_2257	1
scaffold_6	retained_intron	5084001	5084167	-	asmbl_48400	none	blat.proc3825150.chain_3672	1	STRG.7485.1,STRG.7485.2,blat.proc3825150.chain_3671	3
scaffold_14	skipped_exon	1721037	1721580	+	asmbl_11835	none	STRG.16818.1,Trinity_GG_26556_c0_g1_i1,blat.proc3825172.chain_1573	3	STRG.16818.2,Trinity_GG_26556_c0_g1_i2,blat.proc3825172.chain_1572	3
scaffold_5	retained_intron	1548524	1548586	-	asmbl_43859	none	Trinity_GG_3178_c0_g1_i2,blat.proc3825150.chain_1853	2	STRG.5712.1	1
scaffold_26	starts_in_intron	7486031	7486031	+	asmbl_35118	none	blat.proc3825178.chain_1469	1	STRG.28384.1,STRG.28384.2	2
scaffold_2	spliced_intron	2960170	2960333	+	asmbl_24260	none	STRG.1727.2,Trinity_GG_18298_c0_g1_i2	2	STRG.1727.1,Trinity_GG_18298_c0_g1_i1	2
scaffold_1	retained_exon	4239039	4239871	+	asmbl_1647,asmbl_1648	none	STRG.256.1,blat.proc3825164.chain_402,blat.proc3825164.chain_404	3	STRG.256.2,STRG.256.4,blat.proc3825164.chain_403	3
scaffold_17	skipped_exon	2634157	2636152	+	asmbl_18669	none	STRG.20060.3,Trinity_GG_28292_c0_g1_i3,blat.proc3825174.chain_926	3	STRG.20060.4,blat.proc3825174.chain_928	2
scaffold_6	alt_acceptor	753055	753056	-	asmbl_48065	none	STRG.7138.2	1	STRG.7138.1,blat.proc3825150.chain_3251	2
scaffold_16	alternate_exon	6118349	6118441	+	asmbl_16269,asmbl_16270	none	blat.proc3825174.chain_240,blat.proc3825174.chain_242	2	STRG.19343.2,STRG.19343.3,blat.proc3825174.chain_241,blat.proc3825174.chain_243	4
scaffold_13	starts_in_intron	6334115	6334115	-	asmbl_9780	none	Trinity_GG_8969_c2_g1_i1,blat.proc3825156.chain_836	2	STRG.15924.1,Trinity_GG_8969_c2_g1_i2,blat.proc3825156.chain_837	3
scaffold_16	spliced_intron	6135997	6136065	+	asmbl_16275,asmbl_16277	none	STRG.19347.1,blat.proc3825174.chain_191,blat.proc3825174.chain_193	3	STRG.19347.2,blat.proc3825174.chain_194	2
scaffold_12	starts_in_intron	10373844	10373844	-	asmbl_8747	none	blat.proc3825154.chain_3526	1	STRG.15009.1,blat.proc3825154.chain_3525	2
scaffold_7	starts_in_intron	223543	223543	-	asmbl_50680	none	Trinity_GG_4927_c0_g1_i4,blat.proc3825152.chain_1084	2	STRG.8597.1,Trinity_GG_4927_c0_g1_i1,Trinity_GG_4927_c0_g1_i3,blat.proc3825152.chain_1085,blat.proc3825152.chain_1087	5
scaffold_20	spliced_intron	12075926	12076083	-	asmbl_26214,asmbl_26215,asmbl_26217,asmbl_26218	none	STRG.23706.1,Trinity_GG_13163_c0_g1_i1,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_688,blat.proc3825160.chain_689	6	blat.proc3825160.chain_685	1
scaffold_22	alternate_exon	6126988	6127862	+	asmbl_30103	none	blat.proc3825176.chain_2129	1	STRG.24968.7	1
scaffold_10	starts_in_intron	5690849	5690849	+	asmbl_3195	none	Trinity_GG_24188_c1_g1_i1,blat.proc3825170.chain_1088	2	STRG.12397.1,blat.proc3825170.chain_1087	2
scaffold_25	spliced_intron	5776575	5776928	+	asmbl_33580,asmbl_33581	none	STRG.27472.2,blat.proc3825178.chain_588	2	STRG.27472.1,blat.proc3825178.chain_583	2
scaffold_17	alternate_exon	12384936	12385244	-	asmbl_18324,asmbl_18327,asmbl_18328	none	STRG.20776.1,STRG.20776.2,STRG.20776.4	3	STRG.20776.5,Trinity_GG_11637_c4_g1_i1,blat.proc3825158.chain_1711,blat.proc3825158.chain_1715	4
scaffold_8	alt_acceptor	12906334	12906335	-	asmbl_52246	none	STRG.10480.3	1	STRG.10480.1,STRG.10480.2,blat.proc3825152.chain_2733	3
scaffold_19	alt_donor	5346622	5346623	-	asmbl_22150	none	STRG.22102.3,blat.proc3825158.chain_2957	2	STRG.22102.2,blat.proc3825158.chain_2954	2
scaffold_1	retained_intron	4587875	4587986	+	asmbl_1675	none	Trinity_GG_17458_c0_g1_i1,blat.proc3825164.chain_316	2	STRG.283.1,blat.proc3825164.chain_317,blat.proc3825164.chain_318	3
scaffold_19	retained_intron	11481997	11482175	-	asmbl_22405	none	Trinity_GG_12512_c0_g1_i12,blat.proc3825158.chain_3242	2	STRG.22486.1,STRG.22486.2,STRG.22486.3,blat.proc3825158.chain_3243,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	7
scaffold_10	starts_in_intron	2777199	2777199	+	asmbl_3014	none	STRG.12098.2	1	STRG.12098.1,blat.proc3825170.chain_852	2
scaffold_27	alt_acceptor	2787879	2787880	+	asmbl_36106,asmbl_36108,asmbl_36109	none	STRG.28759.1,blat.proc3825178.chain_1826,blat.proc3825178.chain_1827,blat.proc3825178.chain_1830	4	blat.proc3825178.chain_1829	1
scaffold_13	starts_in_intron	2337301	2337301	+	asmbl_10596,asmbl_10597	none	STRG.15564.10,STRG.15564.8,Trinity_GG_25824_c1_g1_i1,blat.proc3825172.chain_233	4	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,blat.proc3825172.chain_222,blat.proc3825172.chain_224	6
scaffold_1	spliced_intron	14355835	14355968	-	asmbl_900,asmbl_902	none	blat.proc3825148.chain_1037,blat.proc3825148.chain_1040	2	blat.proc3825148.chain_1038	1
scaffold_4	starts_in_intron	4415495	4415495	+	asmbl_41247	none	Trinity_GG_19749_c2_g1_i1,blat.proc3825166.chain_857	2	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,Trinity_GG_19749_c0_g1_i2,Trinity_GG_19749_c0_g1_i21,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_842,blat.proc3825166.chain_843,blat.proc3825166.chain_845,blat.proc3825166.chain_847,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_851,blat.proc3825166.chain_852,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	21
scaffold_8	retained_intron	12693755	12693924	+	asmbl_53331	none	blat.proc3825168.chain_3011	1	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3009,blat.proc3825168.chain_3010	7
scaffold_5	alt_acceptor	9579551	9579552	-	asmbl_44289	none	STRG.6278.1	1	blat.proc3825150.chain_2476	1
scaffold_21	alt_acceptor	1061974	1061975	+	asmbl_28322	none	STRG.23785.2	1	STRG.23785.1,STRG.23785.3,Trinity_GG_30443_c0_g1_i1,blat.proc3825176.chain_920,blat.proc3825176.chain_921	5
scaffold_3	retained_exon	11608608	11608730	-	asmbl_39174	none	STRG.3595.1,blat.proc3825148.chain_3468	2	STRG.3595.2,blat.proc3825148.chain_3467,blat.proc3825148.chain_3469	3
scaffold_5	alternate_exon	16844385	16845527	-	asmbl_44782	none	STRG.6872.2,Trinity_GG_3816_c2_g1_i1,blat.proc3825150.chain_2984,blat.proc3825150.chain_2987	4	STRG.6872.1,blat.proc3825150.chain_2985	2
scaffold_4	alternate_exon	4119485	4119615	+	asmbl_41236	none	STRG.4328.2	1	STRG.4328.1	1
scaffold_8	spliced_intron	17498151	17498237	+	asmbl_53482,asmbl_53483,asmbl_53484,asmbl_53488	none	STRG.10682.1,STRG.10682.3,STRG.10682.5,blat.proc3825168.chain_3150,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	6	blat.proc3825168.chain_3151,blat.proc3825168.chain_3152	2
scaffold_1	alt_acceptor	14522266	14522267	-	asmbl_929,asmbl_931	none	STRG.1050.1,STRG.1050.3,blat.proc3825148.chain_1052,blat.proc3825148.chain_1053	4	STRG.1050.2,STRG.1050.4,blat.proc3825148.chain_1051	3
scaffold_5	skipped_exon	5608152	5608962	+	asmbl_45351	none	STRG.5985.1,blat.proc3825166.chain_2203	2	STRG.5985.2	1
scaffold_20	alt_acceptor	6746886	6746887	+	asmbl_26675	none	STRG.23251.2	1	STRG.23251.1,blat.proc3825176.chain_420	2
scaffold_8	alternate_exon	11109257	11109276	-	asmbl_52133	none	STRG.10326.1	1	STRG.10326.2,STRG.10326.3,blat.proc3825152.chain_2585,blat.proc3825152.chain_2586	4
scaffold_10	alternate_exon	13914735	13915154	+	asmbl_3632	none	blat.proc3825170.chain_1594	1	STRG.12983.2,blat.proc3825170.chain_1596,blat.proc3825170.chain_1597	3
scaffold_14	ends_in_intron	13899081	13899081	+	asmbl_12513,asmbl_12514	none	STRG.17673.1,STRG.17673.4	2	STRG.17673.2,blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	3
scaffold_1	starts_in_intron	5541233	5541233	+	asmbl_1728	none	blat.proc3825164.chain_423	1	STRG.345.1,blat.proc3825164.chain_422	2
scaffold_3	retained_intron	6213194	6213223	-	asmbl_38928	none	Trinity_GG_1744_c0_g1_i1	1	STRG.3267.1,STRG.3267.2,STRG.3267.3	3
scaffold_10	spliced_intron	14680476	14680668	+	asmbl_3647	none	Trinity_GG_24476_c0_g1_i1,blat.proc3825170.chain_1613	2	STRG.13012.1,Trinity_GG_24476_c0_g1_i2,Trinity_GG_24476_c0_g1_i3,blat.proc3825170.chain_1612,blat.proc3825170.chain_1614	5
scaffold_7	starts_in_intron	9911611	9911611	+	asmbl_50100	none	STRG.9201.2	1	STRG.9201.1	1
scaffold_23	alt_donor	5579054	5579055	+	asmbl_31577,asmbl_31578,asmbl_31580,asmbl_31582	none	STRG.25933.2,STRG.25933.3,STRG.25933.5,blat.proc3825176.chain_2834,blat.proc3825176.chain_2837,blat.proc3825176.chain_2838,blat.proc3825176.chain_2841	7	STRG.25933.1,STRG.25933.4,blat.proc3825176.chain_2835,blat.proc3825176.chain_2839,blat.proc3825176.chain_2840	5
scaffold_28	spliced_intron	4194207	4194283	-	asmbl_38199	none	STRG.29614.1,blat.proc3825162.chain_2805	2	blat.proc3825162.chain_2804	1
scaffold_12	alt_acceptor	7173214	7173215	+	asmbl_7724	none	STRG.14794.1	1	blat.proc3825170.chain_3303	1
scaffold_28	skipped_exon	3068473	3069108	+	asmbl_37433	none	STRG.29516.3,blat.proc3825178.chain_2700	2	STRG.29516.2	1
scaffold_14	spliced_intron	10479149	10479549	+	asmbl_12322	none	STRG.17398.1,blat.proc3825172.chain_2142	2	STRG.17398.2,blat.proc3825172.chain_2141	2
scaffold_3	starts_in_intron	5927963	5927963	-	asmbl_38874	none	blat.proc3825148.chain_3099	1	STRG.3252.1,blat.proc3825148.chain_3097,blat.proc3825148.chain_3100	3
scaffold_16	alt_acceptor	7115609	7115610	-	asmbl_17165	none	Trinity_GG_10884_c0_g1_i1,blat.proc3825158.chain_524	2	STRG.19389.2,STRG.19389.3	2
scaffold_2	retained_exon	801890	801955	+	asmbl_24107	none	Trinity_GG_18205_c1_g1_i1,blat.proc3825164.chain_1697,blat.proc3825164.chain_1698	3	STRG.1557.1	1
scaffold_4	alt_acceptor	12786765	12786766	+	asmbl_41750,asmbl_41752	none	STRG.4935.2,blat.proc3825166.chain_1365,blat.proc3825166.chain_1369	3	STRG.4935.1,STRG.4935.3	2
scaffold_9	alt_acceptor	12112864	12112865	+	asmbl_54412	none	STRG.11537.2	1	STRG.11537.1,blat.proc3825170.chain_366	2
scaffold_3	alternate_exon	4523557	4523908	+	asmbl_40011	none	STRG.3149.2,blat.proc3825164.chain_3418	2	STRG.3149.1,blat.proc3825164.chain_3417	2
scaffold_7	spliced_intron	2852620	2854421	-	asmbl_50773,asmbl_50774	none	STRG.8713.3,blat.proc3825152.chain_1111	2	STRG.8713.2,STRG.8713.4,Trinity_GG_4932_c0_g3_i1,Trinity_GG_4932_c1_g1_i1,blat.proc3825152.chain_1112,blat.proc3825152.chain_1113,blat.proc3825152.chain_1114	7
scaffold_5	alternate_exon	6014578	6014653	-	asmbl_44081	none	STRG.6019.3	1	STRG.6019.1,Trinity_GG_3358_c1_g1_i4,blat.proc3825150.chain_2168,blat.proc3825150.chain_2170	4
scaffold_2	skipped_exon	1301947	1302291	+	asmbl_24176	none	STRG.1609.1,Trinity_GG_18242_c0_g1_i6,blat.proc3825164.chain_1788	3	STRG.1609.3,Trinity_GG_18242_c0_g1_i2,blat.proc3825164.chain_1790	3
scaffold_13	alt_donor	15519366	15519367	+	asmbl_11516	none	STRG.16596.2	1	STRG.16596.1	1
scaffold_8	spliced_intron	11278487	11279101	-	asmbl_52145,asmbl_52146	none	STRG.10347.2,STRG.10347.3,blat.proc3825152.chain_2593,blat.proc3825152.chain_2596	4	STRG.10347.1,blat.proc3825152.chain_2594	2
scaffold_13	starts_in_intron	3145227	3145227	+	asmbl_10663	none	blat.proc3825172.chain_394	1	STRG.15622.1,blat.proc3825172.chain_393	2
scaffold_4	alternate_exon	7007500	7013761	+	asmbl_41439	none	STRG.4535.1,blat.proc3825166.chain_986	2	Trinity_GG_19824_c0_g1_i3	1
scaffold_24	ends_in_intron	5331914	5331914	-	asmbl_32902	none	blat.proc3825162.chain_13	1	STRG.26625.1,blat.proc3825162.chain_12,blat.proc3825162.chain_14,blat.proc3825162.chain_15	4
scaffold_13	spliced_intron	12039370	12039399	+	asmbl_11324	none	STRG.16345.2	1	STRG.16345.1	1
scaffold_18	ends_in_intron	13056307	13056307	-	asmbl_20165	none	blat.proc3825158.chain_2623	1	STRG.21748.1,blat.proc3825158.chain_2624	2
scaffold_8	skipped_exon	10211267	10211751	+	asmbl_53155	none	STRG.10274.2,Trinity_GG_23026_c0_g1_i1,blat.proc3825168.chain_2837	3	STRG.10274.1,Trinity_GG_23026_c0_g1_i2,blat.proc3825168.chain_2836	3
scaffold_19	ends_in_intron	13141055	13141055	+	asmbl_21852	none	STRG.22633.1	1	STRG.22633.2,blat.proc3825174.chain_3653	2
scaffold_15	starts_in_intron	9872857	9872857	+	asmbl_15428	none	blat.proc3825172.chain_3110	1	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3108,blat.proc3825172.chain_3109	4
scaffold_27	alt_acceptor	5927023	5927024	-	asmbl_37041	none	STRG.29001.2,blat.proc3825162.chain_2240	2	STRG.29001.1,blat.proc3825162.chain_2238	2
scaffold_2	spliced_intron	7241458	7241554	+	asmbl_24552,asmbl_24554,asmbl_24555,asmbl_24556	none	STRG.2055.1,blat.proc3825164.chain_2169,blat.proc3825164.chain_2170,blat.proc3825164.chain_2171,blat.proc3825164.chain_2172	5	blat.proc3825164.chain_2173	1
scaffold_17	retained_intron	8221394	8221539	+	asmbl_18953	none	STRG.20449.4	1	STRG.20449.3,blat.proc3825174.chain_1244,blat.proc3825174.chain_1245	3
scaffold_9	alt_acceptor	67098	67099	+	asmbl_53746,asmbl_53747	none	STRG.10765.1,STRG.10765.2	2	blat.proc3825168.chain_3292	1
scaffold_7	ends_in_intron	12702389	12702389	+	asmbl_50290	none	blat.proc3825168.chain_1854	1	STRG.9382.1,STRG.9382.2,blat.proc3825168.chain_1855	3
scaffold_2	ends_in_intron	15482749	15482749	+	asmbl_25049	none	STRG.2498.2	1	STRG.2498.1,blat.proc3825164.chain_2785	2
scaffold_12	retained_intron	2984860	2985625	-	asmbl_8342	none	Trinity_GG_8109_c0_g1_i1,blat.proc3825154.chain_3028	2	STRG.14535.1,STRG.14535.2,blat.proc3825154.chain_3027	3
scaffold_6	starts_in_intron	854564	854564	-	asmbl_48077	none	STRG.7151.4	1	STRG.7151.1,STRG.7151.3,blat.proc3825150.chain_3267,blat.proc3825150.chain_3268	4
scaffold_6	starts_in_intron	9140192	9140192	+	asmbl_47211	none	Trinity_GG_21574_c0_g1_i9,blat.proc3825168.chain_215	2	STRG.7790.4,blat.proc3825168.chain_210,blat.proc3825168.chain_211,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_217,blat.proc3825168.chain_219	8
scaffold_27	alt_acceptor	6782129	6782130	-	asmbl_37080	none	STRG.29050.1,blat.proc3825162.chain_2279	2	STRG.29050.2,STRG.29050.3,STRG.29050.4,blat.proc3825162.chain_2276,blat.proc3825162.chain_2278,blat.proc3825162.chain_2280	6
scaffold_27	starts_in_intron	1721682	1721682	-	asmbl_36780	none	blat.proc3825162.chain_1887	1	STRG.28663.1,blat.proc3825162.chain_1888	2
scaffold_20	starts_in_intron	6620274	6620274	+	asmbl_26665	none	STRG.23238.2,Trinity_GG_30090_c1_g1_i1,blat.proc3825176.chain_346	3	STRG.23238.1,blat.proc3825176.chain_343	2
scaffold_7	starts_in_intron	731412	731412	-	asmbl_50700	none	blat.proc3825152.chain_1080	1	STRG.8609.1,STRG.8609.2,Trinity_GG_4925_c0_g1_i5,blat.proc3825152.chain_1077,blat.proc3825152.chain_1079	5
scaffold_28	alt_acceptor	3069081	3069082	+	asmbl_37432	none	STRG.29516.1,blat.proc3825178.chain_2699	2	STRG.29516.2,STRG.29516.3,blat.proc3825178.chain_2700	3
scaffold_21	starts_in_intron	7728904	7728904	+	asmbl_28768	none	blat.proc3825176.chain_1477	1	STRG.24316.1,STRG.24316.3,STRG.24316.4,blat.proc3825176.chain_1476	4
scaffold_6	retained_intron	13871424	13871524	+	asmbl_47542	none	Trinity_GG_21790_c0_g1_i2,Trinity_GG_4651_c0_g1_i3,blat.proc3825152.chain_604,blat.proc3825168.chain_641	4	STRG.8133.1,Trinity_GG_21790_c0_g1_i3,Trinity_GG_4651_c0_g1_i1,blat.proc3825152.chain_605,blat.proc3825168.chain_639	5
scaffold_8	skipped_exon	6119515	6122214	+	asmbl_52939	none	STRG.10015.2	1	STRG.10015.1,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	3
scaffold_11	alternate_exon	6713606	6713665	-	asmbl_6739,asmbl_6741	none	STRG.13716.6,Trinity_GG_7683_c0_g1_i2,blat.proc3825154.chain_2288	3	STRG.13716.1,STRG.13716.2,STRG.13716.4,STRG.13716.5,blat.proc3825154.chain_2286,blat.proc3825154.chain_2287	6
scaffold_23	retained_intron	7281701	7281808	-	asmbl_31022,asmbl_31024	none	STRG.26052.1,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	3	STRG.26052.2	1
scaffold_16	alternate_exon	8588146	8588182	+	asmbl_16418	none	STRG.19490.6	1	STRG.19490.1,STRG.19490.2,STRG.19490.3,STRG.19490.4,STRG.19490.7,blat.proc3825174.chain_372,blat.proc3825174.chain_373,blat.proc3825174.chain_374,blat.proc3825174.chain_375,blat.proc3825174.chain_376	10
scaffold_1	retained_exon	44039	44086	-	asmbl_2,asmbl_8	none	STRG.11.1,blat.proc3825148.chain_63,blat.proc3825148.chain_64	3	STRG.11.3	1
scaffold_16	skipped_exon	3710573	3711063	-	asmbl_16995	none	STRG.19178.1,blat.proc3825158.chain_308	2	blat.proc3825158.chain_307	1
scaffold_12	alternate_exon	16530065	16530125	-	asmbl_9129	none	Trinity_GG_8632_c0_g1_i1,blat.proc3825156.chain_236	2	STRG.15414.1,STRG.15414.2,STRG.15414.3,Trinity_GG_8632_c0_g1_i2,blat.proc3825156.chain_237	5
scaffold_25	retained_intron	3095414	3095695	-	asmbl_34089	none	blat.proc3825162.chain_553	1	STRG.27251.2,blat.proc3825162.chain_555	2
scaffold_7	alt_acceptor	3955080	3955081	-	asmbl_50829,asmbl_50832,asmbl_50833,asmbl_50835	none	STRG.8794.1,blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1228,blat.proc3825152.chain_1230	5	STRG.8794.2,blat.proc3825152.chain_1231,blat.proc3825152.chain_1232,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235,blat.proc3825152.chain_1236	6
scaffold_15	alternate_exon	13680158	13680312	-	asmbl_14653	none	STRG.18798.1,blat.proc3825156.chain_3641	2	STRG.18798.2	1
scaffold_1	spliced_intron	18029822	18030007	-	asmbl_1077	none	STRG.1268.4	1	STRG.1268.5,STRG.1268.7,blat.proc3825164.chain_1345	3
scaffold_18	alt_acceptor	8401324	8401325	+	asmbl_20836	none	STRG.21513.2	1	STRG.21513.1,blat.proc3825174.chain_2580	2
scaffold_4	spliced_intron	12711355	12711630	+	asmbl_41742	none	blat.proc3825166.chain_1323	1	STRG.4912.3,Trinity_GG_20041_c0_g1_i1,blat.proc3825166.chain_1324	3
scaffold_1	retained_intron	18488075	18488185	-	asmbl_1109,asmbl_1110,asmbl_1116	none	STRG.1298.4,STRG.1298.7,Trinity_GG_709_c0_g1_i3,blat.proc3825148.chain_1317,blat.proc3825148.chain_1318	5	STRG.1298.8	1
scaffold_22	alternate_exon	7881242	7884808	-	asmbl_29431	none	STRG.25144.1	1	blat.proc3825160.chain_2296	1
scaffold_16	retained_intron	3706316	3706582	+	asmbl_16149	none	blat.proc3825174.chain_106	1	STRG.19177.1,blat.proc3825174.chain_107	2
scaffold_27	ends_in_intron	1550482	1550482	+	asmbl_36022	none	Trinity_GG_33147_c0_g1_i3,blat.proc3825178.chain_1743	2	STRG.28642.1,STRG.28642.2,Trinity_GG_33147_c0_g1_i4,Trinity_GG_33147_c0_g1_i5,blat.proc3825178.chain_1740,blat.proc3825178.chain_1741	6
scaffold_21	spliced_intron	10965131	10965246	+	asmbl_28900,asmbl_28902,asmbl_28904	none	STRG.24574.1,STRG.24574.3,Trinity_GG_30885_c0_g1_i3,Trinity_GG_30885_c0_g1_i4,blat.proc3825176.chain_1687,blat.proc3825176.chain_1688	6	Trinity_GG_30885_c0_g1_i2,blat.proc3825176.chain_1685	2
scaffold_22	ends_in_intron	4570828	4570828	+	asmbl_30017	none	blat.proc3825176.chain_1981	1	STRG.24886.1,blat.proc3825176.chain_1979,blat.proc3825176.chain_1980	3
scaffold_9	spliced_intron	6904964	6905139	-	asmbl_55095	none	Trinity_GG_6207_c0_g1_i5,blat.proc3825152.chain_3441	2	Trinity_GG_6207_c0_g1_i4,blat.proc3825152.chain_3444	2
scaffold_6	ends_in_intron	8587652	8587652	+	asmbl_47162	none	blat.proc3825168.chain_171	1	STRG.7739.1,Trinity_GG_21555_c0_g1_i9,blat.proc3825168.chain_170,blat.proc3825168.chain_173	4
scaffold_4	alternate_exon	16352771	16352886	+	asmbl_41968	none	STRG.5212.1,blat.proc3825166.chain_1586	2	STRG.5212.2	1
scaffold_5	retained_intron	11644624	11644686	+	asmbl_45755	none	STRG.6426.2,blat.proc3825166.chain_2586	2	STRG.6426.1	1
scaffold_25	alt_acceptor	4818564	4818565	+	asmbl_33538	none	STRG.27418.1	1	STRG.27418.2,STRG.27418.3,Trinity_GG_32399_c0_g1_i1,Trinity_GG_32399_c0_g1_i2,blat.proc3825178.chain_470,blat.proc3825178.chain_471	6
scaffold_6	ends_in_intron	12550266	12550266	-	asmbl_48828	none	blat.proc3825152.chain_421	1	STRG.8017.1,STRG.8017.2,STRG.8017.3	3
scaffold_6	alternate_exon	12999206	13003403	-	asmbl_48863,asmbl_48864,asmbl_48866,asmbl_48867,asmbl_48868	none	STRG.8068.5,STRG.8068.6,blat.proc3825152.chain_491,blat.proc3825152.chain_493,blat.proc3825152.chain_496	5	STRG.8068.7,blat.proc3825152.chain_494	2
scaffold_3	spliced_intron	5129399	5129745	-	asmbl_38831	none	STRG.3207.2,blat.proc3825148.chain_3036	2	STRG.3207.1,blat.proc3825148.chain_3035	2
scaffold_5	alt_donor	4718821	4718822	+	asmbl_45291	none	STRG.5927.1,blat.proc3825166.chain_2154	2	STRG.5927.2	1
scaffold_15	retained_intron	11562810	11563294	-	asmbl_14523	none	blat.proc3825156.chain_3524	1	STRG.18618.1,blat.proc3825156.chain_3525	2
scaffold_2	spliced_intron	14361444	14361522	+	asmbl_24920,asmbl_24923	none	STRG.2438.1,blat.proc3825164.chain_2691,blat.proc3825164.chain_2692	3	STRG.2438.2,blat.proc3825164.chain_2689	2
scaffold_15	alt_acceptor	12114572	12114573	+	asmbl_15537,asmbl_15538	none	STRG.18668.1,blat.proc3825172.chain_3296,blat.proc3825172.chain_3297	3	STRG.18668.2	1
scaffold_15	alt_donor	1260832	1260833	+	asmbl_14997,asmbl_14999	none	STRG.17942.3,blat.proc3825172.chain_2635	2	STRG.17942.1,STRG.17942.2,Trinity_GG_27153_c0_g1_i1,blat.proc3825172.chain_2636,blat.proc3825172.chain_2637	5
scaffold_21	starts_in_intron	6923099	6923099	-	asmbl_27751,asmbl_27753	none	STRG.24221.2,blat.proc3825160.chain_1342	2	STRG.24221.1,blat.proc3825160.chain_1341	2
scaffold_4	spliced_intron	4112991	4113116	-	asmbl_42480,asmbl_42481	none	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_482	4	blat.proc3825150.chain_478,blat.proc3825150.chain_481	2
scaffold_25	skipped_exon	5828532	5829193	-	asmbl_34289,asmbl_34290	none	STRG.27479.2,STRG.27479.3	2	STRG.27479.1,STRG.27479.4,Trinity_GG_15422_c0_g1_i7,blat.proc3825162.chain_875,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_879,blat.proc3825162.chain_880	8
scaffold_6	spliced_intron	9093568	9093795	+	asmbl_47202,asmbl_47204	none	STRG.7789.1,STRG.7789.2,blat.proc3825168.chain_248	3	STRG.7789.3	1
scaffold_14	alt_acceptor	8695572	8695573	-	asmbl_13338,asmbl_13341	none	STRG.17305.2,blat.proc3825156.chain_2144	2	blat.proc3825156.chain_2146	1
scaffold_5	alt_acceptor	18697627	18697628	-	asmbl_44854	none	STRG.6997.1	1	STRG.6997.2,STRG.6997.3	2
scaffold_7	skipped_exon	8296258	8297094	-	asmbl_50995	none	STRG.9066.1,blat.proc3825152.chain_1457	2	STRG.9066.3,blat.proc3825152.chain_1453	2
scaffold_28	alt_donor	3839585	3839586	+	asmbl_37493,asmbl_37494	none	STRG.29579.1,blat.proc3825178.chain_2778,blat.proc3825178.chain_2780	3	blat.proc3825178.chain_2781	1
scaffold_9	alt_acceptor	11130886	11130887	+	asmbl_54335	none	STRG.11428.1,Trinity_GG_23692_c0_g1_i1,blat.proc3825170.chain_264	3	STRG.11428.2	1
scaffold_5	spliced_intron	16258346	16258731	+	asmbl_46067	none	STRG.6819.1,Trinity_GG_21027_c0_g1_i2	2	Trinity_GG_21027_c0_g1_i1	1
scaffold_15	retained_exon	15448667	15449028	+	asmbl_15793,asmbl_15794,asmbl_15795	none	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,blat.proc3825172.chain_3619,blat.proc3825172.chain_3624	5	Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3626	2
scaffold_26	retained_intron	3673200	3673300	+	asmbl_34812	none	blat.proc3825178.chain_1106	1	STRG.28048.1,blat.proc3825178.chain_1108,blat.proc3825178.chain_1110,blat.proc3825178.chain_1111,blat.proc3825178.chain_1112	5
scaffold_2	starts_in_intron	10123716	10123716	+	asmbl_24695	none	Trinity_GG_18555_c0_g1_i1	1	Trinity_GG_18555_c0_g1_i2	1
scaffold_20	alt_acceptor	8208343	8208344	-	asmbl_25974	none	STRG.23371.1	1	blat.proc3825160.chain_514	1
scaffold_10	spliced_intron	2669269	2669443	+	asmbl_2986,asmbl_2988	none	STRG.12087.1,STRG.12087.2,blat.proc3825170.chain_843	3	blat.proc3825170.chain_844	1
scaffold_23	alt_acceptor	197906	197907	+	asmbl_31285	none	STRG.25536.1	1	STRG.25536.2	1
scaffold_3	retained_intron	14186470	14186940	-	asmbl_39327	none	STRG.3761.3,Trinity_GG_2073_c0_g1_i5,blat.proc3825148.chain_3667	3	STRG.3761.1,STRG.3761.2,STRG.3761.4,STRG.3761.5,blat.proc3825148.chain_3664,blat.proc3825148.chain_3666,blat.proc3825148.chain_3668	7
scaffold_9	starts_in_intron	17609580	17609580	-	asmbl_55664	none	blat.proc3825154.chain_293	1	STRG.11851.1,STRG.11851.2,blat.proc3825154.chain_294,blat.proc3825154.chain_295,blat.proc3825154.chain_296	5
scaffold_14	skipped_exon	15585029	15586492	+	asmbl_12629,asmbl_12630,asmbl_12631	none	STRG.17811.2,STRG.17811.6,STRG.17811.7	3	STRG.17811.1,STRG.17811.3,blat.proc3825172.chain_2554,blat.proc3825172.chain_2556	4
scaffold_16	starts_in_intron	6118700	6118700	+	asmbl_16266	none	STRG.19343.3,blat.proc3825174.chain_241,blat.proc3825174.chain_243	3	STRG.19343.1,STRG.19343.2,blat.proc3825174.chain_239,blat.proc3825174.chain_242,blat.proc3825174.chain_244	5
scaffold_13	spliced_intron	8166668	8166859	-	asmbl_9943	none	STRG.16109.1	1	blat.proc3825156.chain_989	1
scaffold_10	starts_in_intron	6332829	6332829	+	asmbl_3237	none	Trinity_GG_24176_c0_g1_i2	1	STRG.12464.1	1
scaffold_14	skipped_exon	15345450	15346877	-	asmbl_13712	none	STRG.17765.3,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2610	3	STRG.17765.1,Trinity_GG_9998_c0_g1_i4,blat.proc3825156.chain_2605,blat.proc3825156.chain_2607	4
scaffold_6	alt_acceptor	15112563	15112564	+	asmbl_47657	none	STRG.8277.2	1	STRG.8277.1,STRG.8277.3,blat.proc3825168.chain_760	3
scaffold_8	retained_intron	1801775	1801810	-	asmbl_51707	none	blat.proc3825168.chain_2303	1	STRG.9780.1	1
scaffold_4	starts_in_intron	9964958	9964958	-	asmbl_42831	none	blat.proc3825150.chain_970	1	STRG.4759.1,STRG.4759.2,blat.proc3825150.chain_971,blat.proc3825150.chain_972	4
scaffold_4	alt_donor	14965767	14965768	+	asmbl_41911	none	blat.proc3825166.chain_1531	1	STRG.5106.1,STRG.5106.2,Trinity_GG_20178_c0_g1_i4,blat.proc3825166.chain_1532,blat.proc3825166.chain_1533,blat.proc3825166.chain_1534,blat.proc3825166.chain_1535	7
scaffold_4	alt_donor	9716055	9716056	-	asmbl_42820	none	STRG.4739.1,blat.proc3825150.chain_943	2	STRG.4739.2,blat.proc3825150.chain_944	2
scaffold_23	alternate_exon	10938395	10938817	-	asmbl_31178	none	STRG.26299.1,Trinity_GG_14694_c0_g1_i1	2	blat.proc3825160.chain_3413,blat.proc3825160.chain_3414	2
scaffold_8	alt_acceptor	1801775	1801776	-	asmbl_51706	none	STRG.9780.1	1	STRG.9780.2	1
scaffold_7	skipped_exon	2484086	2486547	+	asmbl_49645,asmbl_49647,asmbl_49650	none	STRG.8684.2,blat.proc3825168.chain_1193,blat.proc3825168.chain_1196	3	STRG.8684.1	1
scaffold_9	retained_exon	17851393	17851853	+	asmbl_54656,asmbl_54658	none	STRG.11873.1,Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_572	3	STRG.11873.2,Trinity_GG_23881_c0_g1_i5,blat.proc3825170.chain_570	3
scaffold_22	retained_intron	10069396	10069489	+	asmbl_30345	none	STRG.25364.1	1	STRG.25364.2	1
scaffold_20	retained_intron	1490355	1490426	+	asmbl_26415	none	STRG.22869.4,Trinity_GG_29893_c1_g1_i3,Trinity_GG_29893_c1_g1_i4,blat.proc3825176.chain_24,blat.proc3825176.chain_25,blat.proc3825176.chain_26	6	STRG.22869.2,STRG.22869.3	2
scaffold_16	alt_donor	11297157	11297158	+	asmbl_16570,asmbl_16572	none	STRG.19661.1,STRG.19661.2,blat.proc3825174.chain_590	3	STRG.19661.3	1
scaffold_18	spliced_intron	835426	835527	-	asmbl_19598,asmbl_19601,asmbl_19603	none	STRG.21007.3,blat.proc3825158.chain_1974,blat.proc3825158.chain_1977	3	blat.proc3825158.chain_1976	1
scaffold_10	ends_in_intron	378815	378815	-	asmbl_3949	none	Trinity_GG_6631_c0_g1_i1,blat.proc3825154.chain_456	2	STRG.11922.1,STRG.11922.4,blat.proc3825154.chain_461,blat.proc3825154.chain_462	4
scaffold_1	spliced_intron	12450440	12450558	+	asmbl_2218,asmbl_2220,asmbl_2221	none	STRG.859.1,STRG.859.2,Trinity_GG_17840_c0_g1_i2,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1027,blat.proc3825164.chain_1030,blat.proc3825164.chain_1031	7	Trinity_GG_17840_c0_g1_i9,blat.proc3825164.chain_1026	2
scaffold_12	starts_in_intron	15212745	15212745	+	asmbl_8116	none	Trinity_GG_25697_c0_g1_i5,blat.proc3825170.chain_3729	2	STRG.15322.1,STRG.15322.2,STRG.15322.3,Trinity_GG_25697_c0_g1_i2,Trinity_GG_25697_c0_g1_i3,Trinity_GG_25697_c0_g1_i4,blat.proc3825170.chain_3727,blat.proc3825170.chain_3728,blat.proc3825170.chain_3730	9
scaffold_11	alternate_exon	36210	36395	-	asmbl_6366	none	STRG.13237.1,blat.proc3825154.chain_1815	2	STRG.13237.2,blat.proc3825154.chain_1816	2
scaffold_6	alternate_exon	10750272	10750396	+	asmbl_47298	none	blat.proc3825168.chain_364	1	STRG.7893.1,blat.proc3825168.chain_365	2
scaffold_1	spliced_intron	175065	175198	-	asmbl_14,asmbl_15	none	STRG.16.1,STRG.16.2,blat.proc3825148.chain_25,blat.proc3825148.chain_26	4	Trinity_GG_12_c0_g1_i1,Trinity_GG_12_c0_g1_i4,Trinity_GG_12_c0_g1_i5,blat.proc3825148.chain_23,blat.proc3825148.chain_24,blat.proc3825148.chain_27,blat.proc3825148.chain_28	7
scaffold_2	starts_in_intron	14194051	14194051	-	asmbl_23567	none	STRG.2416.2	1	STRG.2416.1,STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	5
scaffold_8	ends_in_intron	18253145	18253145	+	asmbl_53543	none	Trinity_GG_23254_c0_g1_i2,blat.proc3825168.chain_3243	2	STRG.10733.1,blat.proc3825168.chain_3242	2
scaffold_7	alt_acceptor	8326608	8326609	-	asmbl_51009,asmbl_51011	none	STRG.9069.1,blat.proc3825152.chain_1386,blat.proc3825152.chain_1393	3	STRG.9069.3,blat.proc3825152.chain_1384	2
scaffold_6	alt_donor	12899656	12899657	+	asmbl_47442,asmbl_47443	none	STRG.8048.1,STRG.8048.2,blat.proc3825168.chain_459	3	STRG.8048.3	1
scaffold_19	alt_acceptor	12246328	12246329	-	asmbl_22468,asmbl_22470	none	STRG.22552.2,blat.proc3825158.chain_3309,blat.proc3825158.chain_3311	3	blat.proc3825158.chain_3312	1
scaffold_5	alt_acceptor	7029548	7029549	+	asmbl_45473,asmbl_45475,asmbl_45476	none	STRG.6116.1,STRG.6116.4,blat.proc3825166.chain_2374	3	STRG.6116.2,STRG.6116.3	2
scaffold_27	spliced_intron	2536912	2537126	+	asmbl_36087	none	STRG.28724.1,blat.proc3825178.chain_1813	2	blat.proc3825178.chain_1812	1
scaffold_10	alt_donor	17349806	17349807	-	asmbl_5055	none	blat.proc3825154.chain_1785	1	blat.proc3825154.chain_1786	1
scaffold_5	alt_acceptor	6278152	6278153	-	asmbl_44086,asmbl_44088	none	STRG.6037.1,blat.proc3825150.chain_2242,blat.proc3825150.chain_2244	3	STRG.6037.2	1
scaffold_21	starts_in_intron	8004586	8004586	+	asmbl_28775	none	STRG.24337.3	1	STRG.24337.1,blat.proc3825176.chain_1555	2
scaffold_6	alt_acceptor	17443865	17443866	+	asmbl_47754	none	STRG.8448.2	1	STRG.8448.1,Trinity_GG_21959_c0_g1_i1,blat.proc3825168.chain_913	3
scaffold_16	ends_in_intron	6534208	6534208	+	asmbl_16311	none	Trinity_GG_27918_c0_g1_i3,blat.proc3825174.chain_288	2	STRG.19378.1,STRG.19378.2,Trinity_GG_27918_c0_g1_i2,Trinity_GG_27918_c0_g1_i4,blat.proc3825174.chain_289,blat.proc3825174.chain_290	6
scaffold_16	retained_intron	6193425	6193670	+	asmbl_16292,asmbl_16294	none	STRG.19370.1,blat.proc3825174.chain_260,blat.proc3825174.chain_261	3	STRG.19370.2,blat.proc3825174.chain_258	2
scaffold_13	alt_donor	15363548	15363549	+	asmbl_11494,asmbl_11495	none	STRG.16579.1,STRG.16579.7,Trinity_GG_26428_c0_g1_i3	3	Trinity_GG_26428_c0_g1_i1	1
scaffold_736	retained_intron	2408	2427	+	asmbl_51639	none	Trinity_GG_34150_c0_g1_i1	1	STRG.30451.1	1
scaffold_17	spliced_intron	538675	539181	+	asmbl_18543,asmbl_18550	none	STRG.19902.1,blat.proc3825174.chain_788,blat.proc3825174.chain_789	3	STRG.19902.3,blat.proc3825174.chain_784,blat.proc3825174.chain_786	3
scaffold_4	alternate_exon	16650275	16650316	+	asmbl_41994	none	STRG.5252.2	1	blat.proc3825166.chain_1602	1
scaffold_19	spliced_intron	3516757	3516831	+	asmbl_21322	none	blat.proc3825174.chain_3073	1	STRG.22039.1	1
scaffold_4	retained_intron	16912206	16912455	+	asmbl_42011	none	STRG.5280.4	1	STRG.5280.3	1
scaffold_340	alternate_exon	4445	4605	+	asmbl_41018	none	STRG.30296.1	1	Trinity_GG_34082_c0_g1_i1,blat.proc3825178.chain_3388	2
scaffold_19	retained_intron	8753361	8753725	+	asmbl_21549	none	blat.proc3825174.chain_3314	1	blat.proc3825174.chain_3313	1
scaffold_11	retained_exon	17374441	17374452	+	asmbl_6223	none	blat.proc3825170.chain_2884	1	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2882	3
scaffold_7	spliced_intron	12259661	12259956	+	asmbl_50225	none	STRG.9322.1,Trinity_GG_22482_c0_g1_i3,blat.proc3825168.chain_1837	3	Trinity_GG_22482_c0_g1_i1,blat.proc3825168.chain_1836	2
scaffold_1	retained_exon	18087007	18087072	-	asmbl_1087	none	STRG.1272.1,blat.proc3825148.chain_1269,blat.proc3825148.chain_1270	3	STRG.1272.2	1
scaffold_8	starts_in_intron	14571301	14571301	+	asmbl_53379	none	STRG.10543.6,Trinity_GG_23185_c0_g1_i1,blat.proc3825168.chain_3104	3	STRG.10543.1,STRG.10543.2,STRG.10543.3,STRG.10543.4,blat.proc3825168.chain_3106	5
scaffold_8	retained_intron	11853070	11855193	+	asmbl_53285	none	Trinity_GG_23130_c0_g1_i12,blat.proc3825168.chain_3017	2	STRG.10390.3,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	4
scaffold_5	alternate_exon	10890168	10890300	-	asmbl_44387	none	blat.proc3825150.chain_2464	1	STRG.6367.2,blat.proc3825150.chain_2462,blat.proc3825150.chain_2463	3
scaffold_9	skipped_exon	10916510	10917412	+	asmbl_54308,asmbl_54312,asmbl_54313	none	STRG.11408.1,blat.proc3825170.chain_168,blat.proc3825170.chain_170,blat.proc3825170.chain_172	4	STRG.11408.2,blat.proc3825170.chain_169,blat.proc3825170.chain_171	3
scaffold_7	retained_intron	12437710	12437791	+	asmbl_50266	none	blat.proc3825168.chain_1882	1	STRG.9343.1,STRG.9343.2,blat.proc3825168.chain_1883	3
scaffold_13	alternate_exon	8348444	8348586	+	asmbl_11124	none	Trinity_GG_26182_c0_g1_i3,blat.proc3825172.chain_912	2	STRG.16126.2,blat.proc3825172.chain_910	2
scaffold_26	alternate_exon	9039928	9039989	-	asmbl_35759	none	STRG.28469.1,blat.proc3825162.chain_1676	2	STRG.28469.2	1
scaffold_25	alt_acceptor	7322302	7322303	-	asmbl_34397	none	STRG.27581.2	1	STRG.27581.1,STRG.27581.4	2
scaffold_10	retained_exon	13960447	13960532	-	asmbl_4939	none	STRG.12996.1,blat.proc3825154.chain_1562	2	STRG.12996.2	1
scaffold_27	ends_in_intron	3541723	3541723	+	asmbl_36208	none	blat.proc3825178.chain_1999	1	STRG.28825.1	1
scaffold_10	spliced_intron	6871848	6872357	-	asmbl_4506,asmbl_4508,asmbl_4509,asmbl_4511	none	STRG.12511.1,blat.proc3825154.chain_1139,blat.proc3825154.chain_1142,blat.proc3825154.chain_1144,blat.proc3825154.chain_1145	5	blat.proc3825154.chain_1143,blat.proc3825154.chain_1147	2
scaffold_21	alternate_exon	3165289	3178269	+	asmbl_28464,asmbl_28472	none	STRG.23959.2,STRG.23959.5	2	STRG.23959.6	1
scaffold_9	ends_in_intron	17489095	17489095	-	asmbl_55652	none	Trinity_GG_6539_c0_g1_i2,blat.proc3825154.chain_312	2	STRG.11845.1,STRG.11845.2,blat.proc3825154.chain_310,blat.proc3825154.chain_311	4
scaffold_25	alt_acceptor	842571	842572	-	asmbl_34006	none	STRG.27140.1,blat.proc3825162.chain_517	2	STRG.27140.2	1
scaffold_19	alt_donor	12812771	12812772	-	asmbl_22543	none	STRG.22601.1,blat.proc3825158.chain_3379	2	STRG.22601.2,Trinity_GG_12576_c0_g1_i2,blat.proc3825158.chain_3378	3
scaffold_2	alt_acceptor	9123244	9123245	+	asmbl_24664,asmbl_24665	none	STRG.2156.1,Trinity_GG_18540_c0_g1_i1,Trinity_GG_18540_c0_g1_i2,blat.proc3825164.chain_2359,blat.proc3825164.chain_2360	5	STRG.2156.2	1
scaffold_6	retained_exon	16605135	16605330	+	asmbl_47709	none	STRG.8386.1	1	STRG.8386.2	1
scaffold_17	retained_intron	9531029	9531393	+	asmbl_19105,asmbl_19110	none	STRG.20578.3,blat.proc3825174.chain_1397,blat.proc3825174.chain_1399	3	STRG.20578.1,Trinity_GG_28562_c0_g1_i8,blat.proc3825174.chain_1400	3
scaffold_24	starts_in_intron	3752290	3752290	-	asmbl_32847	none	blat.proc3825160.chain_3697	1	STRG.26576.1,STRG.26576.2,Trinity_GG_14862_c0_g1_i5,blat.proc3825160.chain_3696,blat.proc3825160.chain_3698	5
scaffold_23	alt_acceptor	3025102	3025103	-	asmbl_30779	none	STRG.25750.1,blat.proc3825160.chain_2948	2	STRG.25750.2	1
scaffold_26	retained_intron	7900944	7901028	+	asmbl_35155	none	blat.proc3825178.chain_1457	1	STRG.28410.1,STRG.28410.2,Trinity_GG_32991_c0_g1_i3,blat.proc3825178.chain_1456,blat.proc3825178.chain_1458	5
scaffold_18	retained_intron	839307	839434	-	asmbl_19601	none	blat.proc3825158.chain_1974	1	blat.proc3825158.chain_1976,blat.proc3825158.chain_1977	2
scaffold_22	starts_in_intron	11696330	11696330	+	asmbl_30413	none	Trinity_GG_31388_c0_g1_i1	1	STRG.25517.1,blat.proc3825176.chain_2492	2
scaffold_15	ends_in_intron	9731929	9731929	-	asmbl_14406	none	blat.proc3825156.chain_3293	1	STRG.18492.1,STRG.18492.2,STRG.18492.3,STRG.18492.4,Trinity_GG_10360_c0_g1_i2,blat.proc3825156.chain_3289,blat.proc3825156.chain_3291	7
scaffold_11	spliced_intron	13252736	13252829	-	asmbl_7123,asmbl_7124,asmbl_7125,asmbl_7126	none	STRG.14198.1,STRG.14198.3,blat.proc3825154.chain_2769,blat.proc3825154.chain_2770,blat.proc3825154.chain_2771,blat.proc3825154.chain_2772	6	STRG.14198.2,STRG.14198.4,blat.proc3825154.chain_2767,blat.proc3825154.chain_2773	4
scaffold_2	spliced_intron	4070470	4071066	-	asmbl_23047	none	STRG.1852.2,Trinity_GG_1029_c0_g1_i1,blat.proc3825148.chain_1831	3	Trinity_GG_1029_c0_g1_i2,blat.proc3825148.chain_1832	2
scaffold_23	retained_intron	2016514	2016841	-	asmbl_30682	none	STRG.25673.1,blat.proc3825160.chain_2798	2	blat.proc3825160.chain_2799	1
scaffold_1	retained_exon	8633609	8633664	-	asmbl_460,asmbl_463	none	STRG.571.2,Trinity_GG_304_c0_g1_i5,blat.proc3825148.chain_546	3	STRG.571.1,blat.proc3825148.chain_545	2
scaffold_2237	spliced_intron	774	866	+	asmbl_30553	none	STRG.30731.2	1	STRG.30731.1	1
scaffold_10	ends_in_intron	726688	726688	-	asmbl_3994	none	Trinity_GG_6646_c0_g1_i1,blat.proc3825154.chain_490	2	STRG.11948.1	1
scaffold_32	alt_acceptor	37625	37626	+	asmbl_40950	none	STRG.30020.2	1	blat.proc3825168.chain_1062	1
scaffold_15	alt_acceptor	11167541	11167542	+	asmbl_15485	none	STRG.18593.2	1	STRG.18593.1	1
scaffold_6	alt_donor	16605444	16605445	+	asmbl_47705	none	STRG.8386.3,blat.proc3825168.chain_828,blat.proc3825168.chain_830	3	STRG.8386.1	1
scaffold_15	spliced_intron	10766606	10766774	+	asmbl_15462,asmbl_15463,asmbl_15464,asmbl_15465,asmbl_15466	none	STRG.18562.4,blat.proc3825172.chain_3210,blat.proc3825172.chain_3211,blat.proc3825172.chain_3212,blat.proc3825172.chain_3213,blat.proc3825172.chain_3216	6	blat.proc3825172.chain_3214	1
scaffold_27	retained_exon	1983496	1983703	-	asmbl_36800	none	STRG.28683.1,blat.proc3825162.chain_1934	2	STRG.28683.2,blat.proc3825162.chain_1935	2
scaffold_14	retained_intron	11386909	11387002	-	asmbl_13480	none	blat.proc3825156.chain_2294	1	STRG.17477.1,STRG.17477.2,blat.proc3825156.chain_2291,blat.proc3825156.chain_2292	4
scaffold_14	alternate_exon	2380380	2380544	-	asmbl_12941	none	STRG.16854.2	1	STRG.16854.4,STRG.16854.8	2
scaffold_2	spliced_intron	17932892	17932980	-	asmbl_23761	none	STRG.2682.2	1	STRG.2682.1,blat.proc3825148.chain_2618	2
scaffold_23	alternate_exon	5301941	5302079	+	asmbl_31555,asmbl_31556,asmbl_31558	none	STRG.25908.2,STRG.25908.3,Trinity_GG_31605_c0_g1_i2,Trinity_GG_31605_c0_g1_i4,Trinity_GG_31605_c0_g1_i5,blat.proc3825176.chain_2847,blat.proc3825176.chain_2848,blat.proc3825176.chain_2850	8	STRG.25908.1,Trinity_GG_31605_c0_g1_i1,Trinity_GG_31605_c0_g1_i3,blat.proc3825176.chain_2849,blat.proc3825176.chain_2851	5
scaffold_4	retained_intron	18296287	18296326	+	asmbl_42096	none	STRG.5427.2,Trinity_GG_20274_c1_g1_i1	2	blat.proc3825166.chain_1704	1
scaffold_13	retained_intron	7085246	7085351	-	asmbl_9848	none	blat.proc3825156.chain_979	1	STRG.16012.2	1
scaffold_3	alternate_exon	1556183	1556455	-	asmbl_38719	none	STRG.2986.1,blat.proc3825148.chain_2849	2	STRG.2986.2	1
scaffold_9	starts_in_intron	16547621	16547621	-	asmbl_55577	none	blat.proc3825154.chain_250	1	STRG.11791.1,blat.proc3825154.chain_251	2
scaffold_27	starts_in_intron	2833462	2833462	+	asmbl_36131	none	blat.proc3825178.chain_1933	1	STRG.28768.1,STRG.28768.2,STRG.28768.3,blat.proc3825178.chain_1932,blat.proc3825178.chain_1934,blat.proc3825178.chain_1936	6
scaffold_1	alt_acceptor	14422338	14422339	-	asmbl_917	none	STRG.1042.1	1	STRG.1042.2	1
scaffold_7	ends_in_intron	12269147	12269147	+	asmbl_50237	none	blat.proc3825168.chain_1805	1	STRG.9326.1,STRG.9326.2,blat.proc3825168.chain_1803,blat.proc3825168.chain_1804,blat.proc3825168.chain_1806	5
scaffold_11	alternate_exon	4740703	4740731	+	asmbl_5508	none	STRG.13566.2,blat.proc3825170.chain_2104	2	STRG.13566.1	1
scaffold_19	starts_in_intron	12973356	12973356	-	asmbl_22575,asmbl_22577	none	blat.proc3825158.chain_3362,blat.proc3825158.chain_3364	2	STRG.22618.1,STRG.22618.2,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3363	6
scaffold_6	alt_donor	13658078	13658079	-	asmbl_48930	none	blat.proc3825152.chain_525	1	STRG.8106.3,blat.proc3825152.chain_526	2
scaffold_4	alt_acceptor	1907784	1907785	+	asmbl_41138	none	STRG.4205.2,blat.proc3825166.chain_666	2	STRG.4205.1	1
scaffold_7	alt_acceptor	4043305	4043306	-	asmbl_50846	none	STRG.8802.2	1	STRG.8802.1,blat.proc3825152.chain_1277	2
scaffold_4	starts_in_intron	15295762	15295762	+	asmbl_41938	none	STRG.5125.3,Trinity_GG_20176_c0_g1_i2,blat.proc3825166.chain_1526	3	STRG.5125.1,STRG.5125.2,blat.proc3825166.chain_1527,blat.proc3825166.chain_1528	4
scaffold_8	alternate_exon	3615558	3615964	+	asmbl_52784,asmbl_52785,asmbl_52789,asmbl_52790	none	STRG.9863.1,STRG.9863.2,STRG.9863.3,STRG.9863.4,blat.proc3825168.chain_2408,blat.proc3825168.chain_2410	6	STRG.9863.5	1
scaffold_7	alt_donor	8662330	8662331	-	asmbl_51024,asmbl_51026,asmbl_51028	none	STRG.9099.1,STRG.9099.2,blat.proc3825152.chain_1497,blat.proc3825152.chain_1499	4	blat.proc3825152.chain_1496,blat.proc3825152.chain_1498	2
scaffold_27	alternate_exon	6781632	6782163	-	asmbl_37081	none	STRG.29050.2,blat.proc3825162.chain_2276	2	blat.proc3825162.chain_2277	1
scaffold_5	skipped_exon	15894091	15896094	+	asmbl_46027,asmbl_46030	none	STRG.6778.1,STRG.6778.2,blat.proc3825166.chain_2866	3	STRG.6778.3,STRG.6778.4,blat.proc3825166.chain_2867	3
scaffold_19	spliced_intron	13001384	13001875	+	asmbl_21833	none	Trinity_GG_29813_c0_g1_i1,blat.proc3825174.chain_3632	2	Trinity_GG_29813_c0_g1_i2,blat.proc3825174.chain_3633	2
scaffold_5	retained_intron	10290524	10290823	-	asmbl_44336	none	blat.proc3825150.chain_2521	1	STRG.6329.1,blat.proc3825150.chain_2522	2
scaffold_19	retained_intron	12207921	12208221	+	asmbl_21761	none	STRG.22551.2,Trinity_GG_29759_c0_g1_i2,Trinity_GG_29759_c0_g1_i3,blat.proc3825174.chain_3519,blat.proc3825174.chain_3522	5	STRG.22551.3,Trinity_GG_29759_c0_g1_i5,blat.proc3825174.chain_3520	3
scaffold_6	spliced_intron	1550441	1550570	+	asmbl_46718	none	STRG.7202.2,Trinity_GG_21271_c0_g1_i1,blat.proc3825166.chain_3388	3	STRG.7202.1,Trinity_GG_21271_c0_g1_i2,blat.proc3825166.chain_3387	3
scaffold_17	starts_in_intron	12395183	12395183	-	asmbl_18332	none	blat.proc3825158.chain_1703	1	STRG.20766.1	1
scaffold_7	retained_intron	2523136	2523439	-	asmbl_50760	none	STRG.8690.1,Trinity_GG_4961_c0_g1_i2,blat.proc3825152.chain_1169	3	STRG.8690.2,Trinity_GG_4961_c0_g1_i4,blat.proc3825152.chain_1170	3
scaffold_13	starts_in_intron	7450744	7450744	+	asmbl_11056	none	blat.proc3825172.chain_747	1	STRG.16039.1,Trinity_GG_26098_c0_g1_i5,blat.proc3825172.chain_744,blat.proc3825172.chain_745	4
scaffold_9	alternate_exon	12178787	12178843	+	asmbl_54417	none	STRG.11539.2,Trinity_GG_23729_c0_g1_i1,blat.proc3825170.chain_322	3	STRG.11539.1	1
scaffold_9	ends_in_intron	5277695	5277695	+	asmbl_54016	none	blat.proc3825168.chain_3650	1	STRG.11119.1	1
scaffold_9	spliced_intron	16628131	16628261	-	asmbl_55599,asmbl_55600	none	STRG.11802.1,STRG.11802.3	2	STRG.11802.2,STRG.11802.4,blat.proc3825154.chain_260	3
scaffold_9	retained_intron	8395093	8395319	+	asmbl_54167,asmbl_54170,asmbl_54172	none	STRG.11261.1,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_61	4	STRG.11261.2,blat.proc3825170.chain_62	2
scaffold_23	ends_in_intron	7685757	7685757	+	asmbl_31712	none	STRG.26090.1,blat.proc3825176.chain_3059	2	STRG.26090.2,STRG.26090.3,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3053	6
scaffold_25	alt_acceptor	6073630	6073631	-	asmbl_34317,asmbl_34318,asmbl_34322	none	STRG.27490.1,STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_852	4	STRG.27490.4,blat.proc3825162.chain_851	2
scaffold_14	alternate_exon	6908274	6908313	+	asmbl_12116	none	blat.proc3825172.chain_1910	1	STRG.17131.1,STRG.17131.2,blat.proc3825172.chain_1908,blat.proc3825172.chain_1909,blat.proc3825172.chain_1912	5
scaffold_7	ends_in_intron	813382	813382	+	asmbl_49568	none	blat.proc3825168.chain_1128	1	STRG.8623.1,STRG.8623.2,blat.proc3825168.chain_1125,blat.proc3825168.chain_1127,blat.proc3825168.chain_1129,blat.proc3825168.chain_1130	6
scaffold_10	retained_intron	785638	785839	+	asmbl_2869	none	Trinity_GG_23932_c1_g1_i5,blat.proc3825170.chain_657	2	STRG.11971.7,STRG.11971.8,blat.proc3825170.chain_654,blat.proc3825170.chain_658,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	7
scaffold_18	ends_in_intron	842239	842239	-	asmbl_19600	none	Trinity_GG_11783_c0_g1_i7,blat.proc3825158.chain_1975	2	blat.proc3825158.chain_1974,blat.proc3825158.chain_1976,blat.proc3825158.chain_1977	3
scaffold_13	alt_donor	2376218	2376219	-	asmbl_9456,asmbl_9459	none	STRG.15553.1,STRG.15553.4,blat.proc3825156.chain_448	3	STRG.15553.2,STRG.15553.3,blat.proc3825156.chain_449,blat.proc3825156.chain_450	4
scaffold_500	retained_intron	2902	3472	+	asmbl_46488,asmbl_46493	none	STRG.30357.1,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445,blat.proc3825178.chain_3446	4	STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6	4
scaffold_24	ends_in_intron	9092803	9092803	+	asmbl_32504	none	blat.proc3825178.chain_160	1	STRG.26951.1,STRG.26951.2,STRG.26951.3,STRG.26951.4,blat.proc3825178.chain_158,blat.proc3825178.chain_159,blat.proc3825178.chain_162	7
scaffold_14	alt_acceptor	404542	404543	+	asmbl_11747,asmbl_11748,asmbl_11750,asmbl_11751,asmbl_11755	none	STRG.16734.1,STRG.16734.2,STRG.16734.4,STRG.16734.6,Trinity_GG_26526_c0_g1_i18,blat.proc3825172.chain_1514	6	STRG.16734.3,STRG.16734.5,Trinity_GG_26526_c0_g1_i24,Trinity_GG_26526_c0_g1_i4,blat.proc3825172.chain_1503,blat.proc3825172.chain_1506,blat.proc3825172.chain_1508,blat.proc3825172.chain_1515	8
scaffold_10	retained_exon	11596017	11596274	+	asmbl_3476,asmbl_3477	none	STRG.12815.1,STRG.12815.3	2	STRG.12815.2	1
scaffold_1999	starts_in_intron	156	156	+	asmbl_22775	none	blat.proc3825178.chain_3645	1	blat.proc3825158.chain_3627,blat.proc3825178.chain_3643,blat.proc3825178.chain_3644	3
scaffold_3	retained_exon	9844427	9844973	-	asmbl_39071	none	STRG.3462.1,blat.proc3825148.chain_3339	2	STRG.3462.2,blat.proc3825148.chain_3337	2
scaffold_20	ends_in_intron	5875304	5875304	+	asmbl_26638	none	blat.proc3825176.chain_386	1	STRG.23189.1,blat.proc3825176.chain_385	2
scaffold_13	spliced_intron	7668097	7668467	+	asmbl_11070	none	STRG.16052.2	1	STRG.16052.1,Trinity_GG_26137_c1_g1_i1,blat.proc3825172.chain_832	3
scaffold_16	alt_acceptor	4046799	4046800	-	asmbl_17044	none	STRG.19219.2	1	STRG.19219.1	1
scaffold_6	spliced_intron	15944871	15944986	+	asmbl_47683	none	blat.proc3825152.chain_740	1	STRG.8324.1,STRG.8324.4	2
scaffold_5	skipped_exon	8132404	8133608	+	asmbl_45530	none	STRG.6188.1,blat.proc3825166.chain_2391	2	STRG.6188.2,blat.proc3825166.chain_2392	2
scaffold_11	spliced_intron	9174309	9174475	+	asmbl_5877	none	STRG.13951.2,Trinity_GG_25017_c0_g1_i2,blat.proc3825170.chain_2524	3	STRG.13951.1,Trinity_GG_25017_c0_g1_i1,blat.proc3825170.chain_2525	3
scaffold_4	alt_acceptor	13607674	13607675	+	asmbl_41806	none	STRG.4987.1,Trinity_GG_20084_c0_g1_i1,blat.proc3825166.chain_1393	3	STRG.4987.2	1
scaffold_25	alt_donor	3084655	3084656	-	asmbl_34088,asmbl_34089,asmbl_34090,asmbl_34091,asmbl_34092	none	STRG.27251.1,STRG.27251.2,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555	5	STRG.27251.3	1
scaffold_5	retained_intron	14763416	14763651	-	asmbl_44619	none	STRG.6677.3,Trinity_GG_3741_c0_g1_i2,blat.proc3825150.chain_2849	3	blat.proc3825150.chain_2848	1
scaffold_4	skipped_exon	16480998	16481293	-	asmbl_43176	none	STRG.5225.3,blat.proc3825150.chain_1403	2	blat.proc3825150.chain_1405	1
scaffold_15	starts_in_intron	4116967	4116967	-	asmbl_14125	none	blat.proc3825156.chain_2936	1	STRG.18155.1,STRG.18155.2,STRG.18155.3,STRG.18155.4,Trinity_GG_10180_c0_g2_i1,blat.proc3825156.chain_2938,blat.proc3825156.chain_2939,blat.proc3825156.chain_2940,blat.proc3825156.chain_2941	9
scaffold_18	alternate_exon	12935735	12935774	+	asmbl_20984	none	STRG.21740.4	1	STRG.21740.1,blat.proc3825158.chain_2618	2
scaffold_2	alt_acceptor	923018	923019	+	asmbl_24159	none	STRG.1570.4	1	STRG.1570.1,STRG.1570.3,STRG.1570.5,STRG.1570.6,blat.proc3825164.chain_1625,blat.proc3825164.chain_1629,blat.proc3825164.chain_1630,blat.proc3825164.chain_1631,blat.proc3825164.chain_1632	9
scaffold_13	alt_acceptor	5131769	5131770	+	asmbl_10825,asmbl_10827,asmbl_10829	none	STRG.15817.1,STRG.15817.3,blat.proc3825172.chain_558,blat.proc3825172.chain_559	4	STRG.15817.2	1
scaffold_13	retained_intron	8235692	8236213	-	asmbl_9959	none	blat.proc3825156.chain_1035	1	STRG.16116.1,blat.proc3825156.chain_1036,blat.proc3825156.chain_1037,blat.proc3825156.chain_1038	4
scaffold_2	retained_intron	7923087	7923870	-	asmbl_23297	none	blat.proc3825148.chain_2076	1	STRG.2089.1,blat.proc3825148.chain_2075,blat.proc3825148.chain_2077,blat.proc3825148.chain_2078,blat.proc3825148.chain_2079	5
scaffold_10	alt_donor	3927934	3927935	-	asmbl_4242,asmbl_4244	none	STRG.12235.3,blat.proc3825154.chain_801	2	STRG.12235.1,STRG.12235.2,STRG.12235.4,blat.proc3825154.chain_797,blat.proc3825154.chain_798,blat.proc3825154.chain_800,blat.proc3825154.chain_802	7
scaffold_18	retained_intron	11327584	11327791	+	asmbl_20940	none	STRG.21676.1,blat.proc3825174.chain_2691	2	STRG.21676.2,blat.proc3825174.chain_2683	2
scaffold_19	alt_acceptor	11399598	11399599	+	asmbl_21693	none	STRG.22469.2	1	STRG.22469.1,Trinity_GG_29734_c0_g1_i2,blat.proc3825174.chain_3465	3
scaffold_17	alt_donor	1718953	1718954	-	asmbl_17729,asmbl_17730	none	STRG.20006.2,STRG.20006.3	2	STRG.20006.1,blat.proc3825158.chain_1003	2
scaffold_28	retained_intron	5755532	5756003	+	asmbl_37604	none	Trinity_GG_33774_c0_g2_i1,blat.proc3825178.chain_2883	2	STRG.29716.1,Trinity_GG_33774_c0_g1_i1,blat.proc3825178.chain_2881	3
scaffold_8	starts_in_intron	1846734	1846734	+	asmbl_52714	none	Trinity_GG_22754_c0_g1_i4	1	blat.proc3825168.chain_2316	1
scaffold_5	skipped_exon	17025179	17028124	+	asmbl_46132	none	STRG.6879.1	1	STRG.6879.2,Trinity_GG_21018_c0_g1_i2,blat.proc3825166.chain_2967	3
scaffold_12	spliced_intron	14123813	14123946	-	asmbl_8988,asmbl_8990,asmbl_8992	none	STRG.15244.1,STRG.15244.2,STRG.15244.3,blat.proc3825156.chain_75	4	Trinity_GG_8555_c0_g1_i1,Trinity_GG_8555_c0_g1_i3,blat.proc3825156.chain_77	3
scaffold_13	retained_intron	221295	221368	+	asmbl_10464	none	blat.proc3825172.chain_175	1	STRG.15430.1,blat.proc3825172.chain_173,blat.proc3825172.chain_174	3
scaffold_1	alt_donor	12547421	12547422	-	asmbl_732	none	STRG.870.2	1	STRG.870.1,blat.proc3825148.chain_801,blat.proc3825148.chain_802	3
scaffold_20	alternate_exon	1951395	1951563	-	asmbl_25625	none	STRG.22935.2	1	STRG.22935.1,blat.proc3825160.chain_32	2
scaffold_3	retained_intron	14177620	14177901	-	asmbl_39323	none	STRG.3752.1,Trinity_GG_2054_c0_g1_i2,blat.proc3825148.chain_3635	3	STRG.3752.2,blat.proc3825148.chain_3634	2
scaffold_28	alt_acceptor	2119822	2119823	+	asmbl_37327	none	STRG.29370.1,blat.proc3825178.chain_2584	2	STRG.29370.2,blat.proc3825178.chain_2585	2
scaffold_4	alt_donor	16912391	16912392	+	asmbl_42008	none	STRG.5280.1	1	STRG.5280.2,STRG.5280.3	2
scaffold_16	retained_exon	10972865	10972915	-	asmbl_17323	none	blat.proc3825158.chain_663	1	STRG.19645.1,STRG.19645.2,blat.proc3825158.chain_660,blat.proc3825158.chain_661	4
scaffold_3	retained_exon	5751391	5751499	+	asmbl_40081	none	STRG.3240.3	1	STRG.3240.1,Trinity_GG_19095_c0_g1_i4,blat.proc3825164.chain_3412	3
scaffold_2	retained_intron	2995448	2995510	-	asmbl_22951	none	STRG.1746.4	1	STRG.1746.2	1
scaffold_15	alternate_exon	5456690	5456802	-	asmbl_14213	none	blat.proc3825156.chain_3104	1	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	5
scaffold_8	spliced_intron	9468446	9468514	-	asmbl_52035,asmbl_52036,asmbl_52037,asmbl_52038,asmbl_52041	none	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2504	6	blat.proc3825152.chain_2505	1
scaffold_21	ends_in_intron	2471815	2471815	-	asmbl_27462	none	blat.proc3825160.chain_1047	1	STRG.23874.1,STRG.23874.2,blat.proc3825160.chain_1043,blat.proc3825160.chain_1044,blat.proc3825160.chain_1045,blat.proc3825160.chain_1048	6
scaffold_9	retained_intron	11842900	11843151	-	asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55332	none	blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	4	STRG.11513.1,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660	4
scaffold_19	spliced_intron	13154555	13154625	-	asmbl_22604,asmbl_22605,asmbl_22607	none	STRG.22639.1,STRG.22639.2,STRG.22639.3,blat.proc3825158.chain_3470,blat.proc3825158.chain_3472	5	blat.proc3825158.chain_3471	1
scaffold_6	retained_exon	4279832	4279983	-	asmbl_48301	none	STRG.7403.1,Trinity_GG_4134_c1_g1_i3,blat.proc3825150.chain_3501,blat.proc3825150.chain_3502	4	STRG.7403.2	1
scaffold_23	skipped_exon	7278221	7279356	-	asmbl_31022,asmbl_31024	none	STRG.26052.1,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	3	STRG.26052.2,STRG.26052.3	2
scaffold_13	starts_in_intron	6740453	6740453	+	asmbl_10968	none	Trinity_GG_26069_c0_g1_i2,blat.proc3825172.chain_691	2	STRG.15956.1	1
scaffold_13	spliced_intron	4803	5031	+	asmbl_10453	none	Trinity_GG_25787_c0_g1_i5,blat.proc3825172.chain_136	2	STRG.15424.1,STRG.15424.2,STRG.15424.3,Trinity_GG_25787_c0_g1_i1,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,Trinity_GG_25787_c0_g1_i8,blat.proc3825172.chain_134,blat.proc3825172.chain_135,blat.proc3825172.chain_137,blat.proc3825172.chain_138,blat.proc3825172.chain_141	13
scaffold_13	retained_exon	9553262	9553299	-	asmbl_10036	none	STRG.16220.2	1	STRG.16220.1,blat.proc3825156.chain_1112	2
scaffold_20	alt_acceptor	8676950	8676951	+	asmbl_26794	none	STRG.23416.1,blat.proc3825176.chain_500	2	STRG.23416.2	1
scaffold_15	retained_intron	4494181	4494312	+	asmbl_15140,asmbl_15146	none	STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2855	3	STRG.18177.1,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2856,blat.proc3825172.chain_2857,blat.proc3825172.chain_2858	6
scaffold_5	alt_donor	11449630	11449631	+	asmbl_45742	none	STRG.6409.2	1	STRG.6409.1,blat.proc3825166.chain_2531	2
scaffold_19	retained_intron	12432771	12432955	+	asmbl_21801,asmbl_21803	none	blat.proc3825174.chain_3596,blat.proc3825174.chain_3598	2	STRG.22571.1,blat.proc3825174.chain_3594,blat.proc3825174.chain_3597	3
scaffold_4	starts_in_intron	14965592	14965592	+	asmbl_41910	none	Trinity_GG_20178_c0_g1_i4,blat.proc3825166.chain_1534	2	STRG.5106.1,STRG.5106.2,blat.proc3825166.chain_1531,blat.proc3825166.chain_1532,blat.proc3825166.chain_1533,blat.proc3825166.chain_1535	6
scaffold_25	ends_in_intron	5155917	5155917	-	asmbl_34250	none	blat.proc3825162.chain_807	1	STRG.27443.1,STRG.27443.2,STRG.27443.3,blat.proc3825162.chain_805,blat.proc3825162.chain_808,blat.proc3825162.chain_810	6
scaffold_19	alt_donor	11475392	11475393	-	asmbl_22399,asmbl_22400	none	STRG.22483.2,STRG.22483.3	2	STRG.22483.1	1
scaffold_25	spliced_intron	6302876	6303091	+	asmbl_33607,asmbl_33609,asmbl_33615,asmbl_33616,asmbl_33617,asmbl_33618	none	STRG.27515.1,STRG.27515.2,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	7	blat.proc3825178.chain_557	1
scaffold_1	alternate_exon	19699025	19699056	-	asmbl_1155	none	STRG.1358.2	1	STRG.1358.1,blat.proc3825148.chain_1352,blat.proc3825148.chain_1353	3
scaffold_28	alt_donor	7189702	7189703	-	asmbl_38379,asmbl_38380	none	STRG.29778.1,blat.proc3825162.chain_2968	2	STRG.29778.2	1
scaffold_1	alt_donor	9109452	9109453	+	asmbl_1954	none	STRG.604.2	1	STRG.604.1,blat.proc3825164.chain_759,blat.proc3825164.chain_760	3
scaffold_7	alt_acceptor	11184987	11184988	+	asmbl_50160	none	STRG.9263.1,blat.proc3825168.chain_1770	2	STRG.9263.2,blat.proc3825168.chain_1769	2
scaffold_28	retained_intron	5390808	5391169	+	asmbl_37584	none	STRG.29687.4,Trinity_GG_33768_c0_g1_i8,blat.proc3825178.chain_2867	3	Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868	2
scaffold_8	alt_donor	2662409	2662410	+	asmbl_52728	none	STRG.9808.2,Trinity_GG_22761_c0_g1_i2,blat.proc3825168.chain_2340	3	STRG.9808.1,Trinity_GG_22761_c0_g1_i1,blat.proc3825168.chain_2339	3
scaffold_12	alt_acceptor	13392286	13392287	-	asmbl_8944	none	STRG.15219.2	1	STRG.15219.3,STRG.15219.4,STRG.15219.5,blat.proc3825156.chain_4,blat.proc3825156.chain_5,blat.proc3825156.chain_6,blat.proc3825156.chain_8	7
scaffold_10	starts_in_intron	531629	531629	-	asmbl_3955	none	STRG.11932.1,Trinity_GG_6601_c0_g1_i1,blat.proc3825154.chain_405	3	STRG.11932.2	1
scaffold_5	alt_donor	189945	189946	+	asmbl_45087	none	STRG.5587.1	1	STRG.5587.3	1
scaffold_12	ends_in_intron	4301871	4301871	+	asmbl_7599	none	blat.proc3825170.chain_3180	1	STRG.14605.1,blat.proc3825170.chain_3179	2
scaffold_13	retained_intron	9535986	9536192	-	asmbl_10031,asmbl_10032	none	STRG.16216.1,STRG.16216.2,blat.proc3825156.chain_1123	3	STRG.16216.4	1
scaffold_21	alt_acceptor	8970191	8970192	-	asmbl_27945,asmbl_27946	none	STRG.24409.1,STRG.24409.2,blat.proc3825160.chain_1566,blat.proc3825160.chain_1568	4	STRG.24409.3,blat.proc3825160.chain_1567,blat.proc3825160.chain_1569	3
scaffold_19	ends_in_intron	10766265	10766265	+	asmbl_21651	none	blat.proc3825174.chain_3440	1	STRG.22418.1,blat.proc3825174.chain_3441	2
scaffold_1	starts_in_intron	6830906	6830906	-	asmbl_385	none	blat.proc3825148.chain_462	1	STRG.474.3	1
scaffold_3	spliced_intron	7593502	7593776	+	asmbl_40169	none	Trinity_GG_19221_c0_g1_i6,blat.proc3825164.chain_3628	2	blat.proc3825164.chain_3625	1
scaffold_5	alternate_exon	8764550	8764709	-	asmbl_44235	none	STRG.6212.1,Trinity_GG_3495_c0_g1_i4,blat.proc3825150.chain_2408	3	STRG.6212.2,Trinity_GG_3495_c0_g1_i1,Trinity_GG_3495_c0_g1_i3,blat.proc3825150.chain_2406,blat.proc3825150.chain_2407	5
scaffold_8	spliced_intron	16396748	16397082	-	asmbl_52385,asmbl_52386,asmbl_52387,asmbl_52388,asmbl_52392,asmbl_52394,asmbl_52395	none	STRG.10626.1,STRG.10626.2,STRG.10626.3,STRG.10626.4,blat.proc3825152.chain_2845,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2849,blat.proc3825152.chain_2851,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	11	Trinity_GG_5893_c0_g1_i6,blat.proc3825152.chain_2850	2
scaffold_1	skipped_exon	20966469	20967714	+	asmbl_2665	none	STRG.1432.2	1	STRG.1432.1,blat.proc3825164.chain_1580	2
scaffold_5	alternate_exon	60912	60936	+	asmbl_45064	none	blat.proc3825166.chain_1864	1	STRG.5566.1	1
scaffold_22	alt_donor	11544135	11544136	+	asmbl_30406	none	blat.proc3825176.chain_2435	1	STRG.25505.1	1
scaffold_22	alt_acceptor	216305	216306	+	asmbl_29818	none	STRG.24676.5	1	STRG.24676.3	1
scaffold_12	starts_in_intron	8823089	8823089	+	asmbl_7831	none	Trinity_GG_25551_c0_g1_i1,blat.proc3825170.chain_3467	2	STRG.14893.1,Trinity_GG_25551_c0_g1_i2,Trinity_GG_25551_c0_g1_i5,Trinity_GG_25551_c0_g1_i6,blat.proc3825170.chain_3463,blat.proc3825170.chain_3464,blat.proc3825170.chain_3465	7
scaffold_4	spliced_intron	14680896	14681020	-	asmbl_43075,asmbl_43077	none	STRG.5102.1,STRG.5102.2,blat.proc3825150.chain_1226	3	blat.proc3825150.chain_1228	1
scaffold_28	skipped_exon	3731759	3732710	-	asmbl_38166	none	blat.proc3825162.chain_2739	1	STRG.29587.1,STRG.29587.2,STRG.29587.3,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2737,blat.proc3825162.chain_2738	9
scaffold_25	spliced_intron	6066072	6066195	-	asmbl_34317,asmbl_34318,asmbl_34319,asmbl_34321,asmbl_34324	none	STRG.27490.1,STRG.27490.2,blat.proc3825162.chain_845,blat.proc3825162.chain_847,blat.proc3825162.chain_848,blat.proc3825162.chain_849,blat.proc3825162.chain_850	7	STRG.27490.3,blat.proc3825162.chain_846	2
scaffold_27	ends_in_intron	3277283	3277283	-	asmbl_36905	none	STRG.28808.5	1	STRG.28808.2	1
scaffold_13	alt_donor	5948410	5948411	-	asmbl_9758,asmbl_9759	none	STRG.15911.3,STRG.15911.4	2	STRG.15911.1,STRG.15911.2,blat.proc3825156.chain_755,blat.proc3825156.chain_756	4
scaffold_10	ends_in_intron	3927766	3927766	-	asmbl_4246	none	STRG.12235.5	1	STRG.12235.1,STRG.12235.2,STRG.12235.3,STRG.12235.4,blat.proc3825154.chain_797,blat.proc3825154.chain_798,blat.proc3825154.chain_800,blat.proc3825154.chain_801,blat.proc3825154.chain_802	9
scaffold_24	alternate_exon	4317229	4319024	+	asmbl_32189	none	STRG.26600.1,Trinity_GG_31987_c2_g1_i1,blat.proc3825176.chain_3496,blat.proc3825176.chain_3497	4	Trinity_GG_31987_c0_g1_i1,Trinity_GG_31987_c0_g1_i2,blat.proc3825176.chain_3494,blat.proc3825176.chain_3495	4
scaffold_2	alternate_exon	13906691	13906759	-	asmbl_23541	none	STRG.2384.2	1	STRG.2384.1,blat.proc3825148.chain_2389,blat.proc3825148.chain_2390,blat.proc3825148.chain_2391,blat.proc3825148.chain_2392	5
scaffold_1	ends_in_intron	858134	858134	-	asmbl_29	none	blat.proc3825148.chain_44	1	STRG.44.1,STRG.44.2,blat.proc3825148.chain_41,blat.proc3825148.chain_42,blat.proc3825148.chain_43	5
scaffold_9	retained_intron	16569591	16569995	+	asmbl_54599,asmbl_54602	none	Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_612,blat.proc3825170.chain_616	4	STRG.11807.1,STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i14,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i21,blat.proc3825170.chain_610,blat.proc3825170.chain_611,blat.proc3825170.chain_613,blat.proc3825170.chain_615,blat.proc3825170.chain_617	11
scaffold_10	spliced_intron	9555421	9557098	+	asmbl_3403	none	STRG.12711.1	1	blat.proc3825170.chain_1279	1
scaffold_16	alt_donor	1510085	1510086	+	asmbl_16083,asmbl_16084	none	STRG.19099.2,blat.proc3825174.chain_11	2	STRG.19099.3	1
scaffold_7	retained_intron	1235347	1235447	+	asmbl_49593,asmbl_49603	none	STRG.8637.4,blat.proc3825168.chain_1072	2	blat.proc3825168.chain_1068	1
scaffold_15	skipped_exon	12421366	12422732	+	asmbl_15564	none	STRG.18696.2	1	STRG.18696.1,blat.proc3825172.chain_3324,blat.proc3825172.chain_3325	3
scaffold_24	spliced_intron	2787231	2787394	-	asmbl_32802	none	STRG.26487.1,blat.proc3825160.chain_3619	2	STRG.26487.2,Trinity_GG_14816_c0_g1_i2,blat.proc3825160.chain_3620	3
scaffold_9	retained_intron	9688546	9688647	-	asmbl_55237,asmbl_55238	none	blat.proc3825152.chain_3615,blat.proc3825152.chain_3616	2	STRG.11346.1,STRG.11346.2,blat.proc3825152.chain_3613,blat.proc3825152.chain_3614	4
scaffold_20	skipped_exon	1616379	1619049	-	asmbl_25589,asmbl_25592	none	STRG.22893.2,STRG.22893.4	2	STRG.22893.1,STRG.22893.3	2
scaffold_5	starts_in_intron	7318563	7318563	+	asmbl_45492,asmbl_45493	none	Trinity_GG_20663_c0_g2_i1,blat.proc3825166.chain_2350	2	STRG.6129.1,STRG.6129.2,Trinity_GG_20663_c0_g1_i1,Trinity_GG_20663_c0_g1_i2,blat.proc3825166.chain_2348,blat.proc3825166.chain_2349	6
scaffold_15	retained_intron	4231185	4231387	+	asmbl_15135	none	blat.proc3825172.chain_2836	1	STRG.18172.2,blat.proc3825172.chain_2838,blat.proc3825172.chain_2843	3
scaffold_11	alt_donor	10398883	10398884	+	asmbl_5941,asmbl_5943	none	STRG.14049.2,blat.proc3825170.chain_2497	2	STRG.14049.1,blat.proc3825170.chain_2496,blat.proc3825170.chain_2498	3
scaffold_24	retained_exon	9592301	9592398	-	asmbl_33139	none	STRG.26947.2	1	STRG.26947.3	1
scaffold_18	retained_intron	823178	823278	+	asmbl_20330	none	blat.proc3825174.chain_1874	1	STRG.21008.1,STRG.21008.2,blat.proc3825174.chain_1871,blat.proc3825174.chain_1872,blat.proc3825174.chain_1873	5
scaffold_13	retained_intron	16048875	16048914	+	asmbl_11548	none	STRG.16642.3	1	blat.proc3825172.chain_1438	1
scaffold_17	retained_intron	3986624	3986812	-	asmbl_17834	none	Trinity_GG_11334_c2_g1_i1,blat.proc3825158.chain_1215,blat.proc3825158.chain_1216	3	STRG.20158.1,STRG.20158.2,blat.proc3825158.chain_1214	3
scaffold_11	alt_donor	8102683	8102684	+	asmbl_5732,asmbl_5733	none	STRG.13823.3,STRG.13823.4	2	STRG.13823.1,STRG.13823.2,blat.proc3825170.chain_2349,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	5
scaffold_3	starts_in_intron	2205591	2205591	-	asmbl_38737	none	blat.proc3825148.chain_2910	1	STRG.3026.1,STRG.3026.2,blat.proc3825148.chain_2907,blat.proc3825148.chain_2908,blat.proc3825148.chain_2911	5
scaffold_3	alt_acceptor	7722744	7722745	-	asmbl_38986	none	STRG.3364.1	1	STRG.3364.2,blat.proc3825148.chain_3171	2
scaffold_8	alt_acceptor	5435077	5435078	+	asmbl_52884,asmbl_52885,asmbl_52886	none	STRG.9974.1,blat.proc3825168.chain_2430,blat.proc3825168.chain_2431,blat.proc3825168.chain_2432	4	STRG.9974.2	1
scaffold_52	alt_acceptor	15173	15174	+	asmbl_46531,asmbl_46532	none	STRG.30061.2,STRG.30061.3,blat.proc3825178.chain_3185,blat.proc3825178.chain_3186	4	STRG.30061.1,blat.proc3825178.chain_3187,blat.proc3825178.chain_3188	3
scaffold_22	ends_in_intron	192973	192973	+	asmbl_29811	none	Trinity_GG_30944_c0_g1_i2,blat.proc3825176.chain_1782	2	STRG.24673.1	1
scaffold_5	retained_intron	15764229	15764723	+	asmbl_46021	none	blat.proc3825166.chain_2914	1	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	7
scaffold_4	starts_in_intron	14679675	14679675	-	asmbl_43074	none	blat.proc3825150.chain_1223	1	STRG.5102.1,STRG.5102.2,blat.proc3825150.chain_1225,blat.proc3825150.chain_1226	4
scaffold_7	ends_in_intron	1234334	1234334	+	asmbl_49595,asmbl_49599	none	blat.proc3825168.chain_1066,blat.proc3825168.chain_1080	2	STRG.8637.1,STRG.8637.2,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1074,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	12
scaffold_13	retained_exon	6047140	6047202	-	asmbl_9765	none	STRG.15915.4,blat.proc3825156.chain_784	2	STRG.15915.1,STRG.15915.5,blat.proc3825156.chain_778,blat.proc3825156.chain_782	4
scaffold_20	alt_acceptor	11672168	11672169	-	asmbl_26176	none	blat.proc3825160.chain_749	1	STRG.23670.2,STRG.23670.3,blat.proc3825160.chain_747,blat.proc3825160.chain_750,blat.proc3825160.chain_751	5
scaffold_506	alt_donor	2394	2395	+	asmbl_46502,asmbl_46504	none	blat.proc3825178.chain_3450,blat.proc3825178.chain_3454	2	STRG.30354.1,STRG.30354.2,blat.proc3825178.chain_3451,blat.proc3825178.chain_3453	4
scaffold_17	retained_exon	9033136	9033165	-	asmbl_18140,asmbl_18143,asmbl_18144	none	STRG.20532.1,STRG.20532.3,STRG.20532.4	3	STRG.20532.5,STRG.20532.6	2
scaffold_19	alt_donor	11583779	11583780	-	asmbl_22430	none	STRG.22498.2,blat.proc3825158.chain_3236	2	STRG.22498.1,blat.proc3825158.chain_3237,blat.proc3825158.chain_3238	3
scaffold_10	alt_donor	5010560	5010561	-	asmbl_4332	none	STRG.12326.2,blat.proc3825154.chain_849	2	STRG.12326.1,blat.proc3825154.chain_850	2
scaffold_19	spliced_intron	12972587	12972817	-	asmbl_22573,asmbl_22576	none	STRG.22618.1,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3363	5	STRG.22618.3,Trinity_GG_12569_c0_g1_i5,blat.proc3825158.chain_3361	3
scaffold_17	starts_in_intron	14392480	14392480	+	asmbl_19406,asmbl_19407	none	STRG.20919.2,STRG.20919.3,blat.proc3825174.chain_1809,blat.proc3825174.chain_1810	4	STRG.20919.1,blat.proc3825174.chain_1808	2
scaffold_1	retained_intron	18327108	18327318	+	asmbl_2551	none	blat.proc3825164.chain_1404	1	STRG.1287.1,blat.proc3825164.chain_1405	2
scaffold_22	alt_donor	4411964	4411965	-	asmbl_29261	none	STRG.24860.2	1	STRG.24860.1,STRG.24860.3	2
scaffold_26	alternate_exon	4593806	4594661	-	asmbl_35567	none	STRG.28182.2,Trinity_GG_15782_c1_g1_i1,blat.proc3825162.chain_1439	3	STRG.28182.1,blat.proc3825162.chain_1436	2
scaffold_12	alt_donor	11222406	11222407	-	asmbl_8792	none	STRG.15066.1,blat.proc3825154.chain_3581	2	STRG.15066.2,blat.proc3825154.chain_3580	2
scaffold_3	retained_exon	16799187	16799398	-	asmbl_39516	none	STRG.3937.3	1	STRG.3937.1,blat.proc3825150.chain_66	2
scaffold_11	alt_acceptor	8078288	8078289	-	asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6830,asmbl_6831,asmbl_6832	none	STRG.13815.1,STRG.13815.2,STRG.13815.3,Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i5,Trinity_GG_7709_c0_g1_i6,Trinity_GG_7709_c0_g1_i8,blat.proc3825154.chain_2326,blat.proc3825154.chain_2328,blat.proc3825154.chain_2329,blat.proc3825154.chain_2331,blat.proc3825154.chain_2332,blat.proc3825154.chain_2333	15	STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2330	4
scaffold_27	retained_intron	512494	512580	-	asmbl_36695,asmbl_36697	none	STRG.28572.1,blat.proc3825162.chain_1809	2	STRG.28572.2,STRG.28572.3	2
scaffold_9	retained_exon	9706783	9706824	+	asmbl_54231,asmbl_54238	none	Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_139,blat.proc3825170.chain_146	3	STRG.11349.1,blat.proc3825170.chain_140,blat.proc3825170.chain_144	3
scaffold_2	retained_intron	8874291	8874368	+	asmbl_24655,asmbl_24656	none	STRG.2139.1,blat.proc3825164.chain_2329,blat.proc3825164.chain_2330	3	STRG.2139.4	1
scaffold_10	starts_in_intron	17357555	17357555	-	asmbl_5059	none	blat.proc3825154.chain_1760	1	STRG.13194.1,blat.proc3825154.chain_1761	2
scaffold_5	spliced_intron	18255418	18255824	+	asmbl_46227,asmbl_46228	none	STRG.6961.1,Trinity_GG_21150_c0_g1_i1,Trinity_GG_21150_c0_g1_i4,blat.proc3825166.chain_3197,blat.proc3825166.chain_3198	5	blat.proc3825166.chain_3195	1
scaffold_19	spliced_intron	12250408	12251336	+	asmbl_21770	none	STRG.22554.1,Trinity_GG_29774_c0_g1_i1,blat.proc3825174.chain_3549	3	STRG.22554.2,Trinity_GG_29774_c0_g1_i2,blat.proc3825174.chain_3548	3
scaffold_4	alt_donor	6701516	6701517	+	asmbl_41423	none	STRG.4531.2	1	STRG.4531.1,STRG.4531.3,blat.proc3825166.chain_908	3
scaffold_13	retained_intron	3734461	3734631	+	asmbl_10732	none	STRG.15695.3,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_444	3	Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,blat.proc3825172.chain_445,blat.proc3825172.chain_446	4
scaffold_19	ends_in_intron	12671569	12671569	+	asmbl_21817,asmbl_21819	none	blat.proc3825174.chain_3612,blat.proc3825174.chain_3613	2	STRG.22581.1,blat.proc3825174.chain_3614	2
scaffold_9	retained_exon	12067597	12067667	-	asmbl_55350	none	STRG.11529.3	1	STRG.11529.2	1
scaffold_1	alternate_exon	16734184	16734267	+	asmbl_2504	none	STRG.1176.2	1	STRG.1176.1,blat.proc3825164.chain_1253,blat.proc3825164.chain_1255	3
scaffold_3	spliced_intron	6659747	6660509	+	asmbl_40103,asmbl_40108,asmbl_40110,asmbl_40116	none	STRG.3295.1,STRG.3295.2,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565	6	STRG.3295.3,Trinity_GG_19180_c0_g1_i4,blat.proc3825164.chain_3561,blat.proc3825164.chain_3564,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3570,blat.proc3825164.chain_3571	8
scaffold_4	starts_in_intron	12544455	12544455	-	asmbl_42924	none	blat.proc3825150.chain_1082	1	STRG.4891.1,blat.proc3825150.chain_1081,blat.proc3825150.chain_1083	3
scaffold_6	retained_intron	18922318	18922547	-	asmbl_49292	none	STRG.8564.2,Trinity_GG_4879_c0_g1_i2,blat.proc3825152.chain_994	3	STRG.8564.1,blat.proc3825152.chain_993	2
scaffold_20	alt_donor	7185226	7185227	-	asmbl_25884	none	blat.proc3825160.chain_383	1	STRG.23287.1,blat.proc3825160.chain_384	2
scaffold_10	alternate_exon	13905288	13914728	+	asmbl_3630,asmbl_3631	none	STRG.12983.2,blat.proc3825170.chain_1596,blat.proc3825170.chain_1597	3	blat.proc3825170.chain_1594	1
scaffold_26	alt_donor	9918590	9918591	-	asmbl_35802	none	STRG.28525.3	1	STRG.28525.1,STRG.28525.2,Trinity_GG_15896_c0_g1_i4,blat.proc3825162.chain_1640,blat.proc3825162.chain_1641	5
scaffold_21	skipped_exon	11670710	11672822	-	asmbl_28138	none	STRG.24631.2,blat.proc3825160.chain_1841	2	STRG.24631.1	1
scaffold_26	starts_in_intron	1862934	1862934	-	asmbl_35414,asmbl_35415	none	STRG.27934.1,blat.proc3825162.chain_1232	2	STRG.27934.2	1
scaffold_10	ends_in_intron	1621309	1621309	+	asmbl_2952	none	Trinity_GG_23966_c1_g1_i1,blat.proc3825170.chain_718	2	STRG.12026.1,STRG.12026.2,STRG.12026.3,STRG.12026.4,STRG.12026.5,STRG.12026.6,Trinity_GG_23966_c0_g1_i3,Trinity_GG_23966_c0_g1_i4,Trinity_GG_23966_c0_g1_i7,Trinity_GG_23966_c0_g1_i8,Trinity_GG_23966_c0_g1_i9,blat.proc3825170.chain_713,blat.proc3825170.chain_714,blat.proc3825170.chain_715,blat.proc3825170.chain_716,blat.proc3825170.chain_717	16
scaffold_15	alternate_exon	6884460	6890332	-	asmbl_14260,asmbl_14263,asmbl_14264,asmbl_14267,asmbl_14268,asmbl_14269	none	STRG.18301.1,STRG.18301.3,STRG.18301.4,STRG.18301.5,STRG.18301.7,Trinity_GG_10293_c0_g1_i10,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3154	10	STRG.18301.6,Trinity_GG_10293_c0_g1_i4,Trinity_GG_10293_c0_g1_i6,Trinity_GG_10293_c1_g1_i1,blat.proc3825156.chain_3155,blat.proc3825156.chain_3157,blat.proc3825156.chain_3160	7
scaffold_11	alt_donor	1984065	1984066	-	asmbl_6464,asmbl_6465	none	STRG.13360.1,blat.proc3825154.chain_1941	2	STRG.13360.2,Trinity_GG_7490_c0_g1_i5,blat.proc3825154.chain_1942,blat.proc3825154.chain_1943	4
scaffold_28	alt_donor	1864045	1864046	-	asmbl_38015	none	STRG.29365.2,blat.proc3825162.chain_2530	2	STRG.29365.1,blat.proc3825162.chain_2529	2
scaffold_2	alt_donor	6351045	6351046	-	asmbl_23196	none	STRG.2001.2	1	STRG.2001.1,Trinity_GG_1061_c0_g1_i1,blat.proc3825148.chain_1893	3
scaffold_4	spliced_intron	1969732	1969832	+	asmbl_41146	none	STRG.4211.2,Trinity_GG_19631_c0_g1_i1,blat.proc3825166.chain_620	3	STRG.4211.1,Trinity_GG_19631_c0_g1_i3,blat.proc3825166.chain_621	3
scaffold_3	spliced_intron	13419144	13419405	-	asmbl_39265	none	STRG.3693.3	1	STRG.3693.1,STRG.3693.2,blat.proc3825148.chain_3583,blat.proc3825148.chain_3584,blat.proc3825148.chain_3585,blat.proc3825148.chain_3590	6
scaffold_17	retained_intron	13951302	13951602	-	asmbl_18388	none	STRG.20870.1	1	STRG.20870.3	1
scaffold_13	alt_donor	6951095	6951096	-	asmbl_9821	none	STRG.15984.4	1	STRG.15984.2,STRG.15984.3,STRG.15984.5,STRG.15984.6	4
scaffold_19	retained_intron	2696720	2696863	+	asmbl_21272	none	Trinity_GG_29454_c0_g1_i1	1	STRG.21955.1	1
scaffold_1	retained_intron	11408932	11409031	+	asmbl_2099	none	Trinity_GG_17780_c0_g1_i2,blat.proc3825164.chain_889	2	STRG.750.1,Trinity_GG_17780_c0_g1_i1,blat.proc3825164.chain_888	3
scaffold_8	starts_in_intron	11624670	11624670	+	asmbl_53252	none	blat.proc3825168.chain_2948,blat.proc3825168.chain_2949	2	STRG.10373.1,blat.proc3825168.chain_2951	2
scaffold_2	skipped_exon	5706615	5707568	-	asmbl_23154	none	STRG.1962.2,blat.proc3825148.chain_1963	2	blat.proc3825148.chain_1961	1
scaffold_20	alt_acceptor	10786648	10786649	+	asmbl_26995	none	STRG.23606.2,blat.proc3825176.chain_798	2	STRG.23606.1,Trinity_GG_30378_c0_g1_i4,blat.proc3825176.chain_799	3
scaffold_17	ends_in_intron	2635084	2635084	+	asmbl_18671	none	blat.proc3825174.chain_927	1	STRG.20060.4,blat.proc3825174.chain_928	2
scaffold_12	starts_in_intron	15096401	15096401	-	asmbl_9045	none	STRG.15320.1,blat.proc3825156.chain_52	2	STRG.15320.2,Trinity_GG_8545_c1_g1_i6,blat.proc3825156.chain_51	3
scaffold_18	alternate_exon	10929668	10929703	-	asmbl_20121	none	STRG.21658.3	1	STRG.21658.1,blat.proc3825158.chain_2513	2
scaffold_19	alternate_exon	9454846	9454974	+	asmbl_21597	none	STRG.22377.2,blat.proc3825174.chain_3390	2	STRG.22377.1,blat.proc3825174.chain_3388	2
scaffold_2	alternate_exon	7480960	7481073	-	asmbl_23268	none	STRG.2068.2,blat.proc3825148.chain_1979	2	STRG.2068.1,blat.proc3825148.chain_1978	2
scaffold_6	retained_exon	4932958	4933047	-	asmbl_48369	none	STRG.7468.1,blat.proc3825150.chain_3591	2	STRG.7468.2,blat.proc3825150.chain_3593	2
scaffold_20	retained_exon	7195820	7196432	+	asmbl_26707	none	STRG.23289.1	1	STRG.23289.2,blat.proc3825176.chain_409,blat.proc3825176.chain_410	3
scaffold_5	alt_donor	13087139	13087140	-	asmbl_44511,asmbl_44512	none	STRG.6544.2,blat.proc3825150.chain_2716	2	STRG.6544.1,blat.proc3825150.chain_2717	2
scaffold_9	alternate_exon	11851239	11853374	-	asmbl_55335	none	STRG.11503.1,blat.proc3825152.chain_3714	2	blat.proc3825152.chain_3715	1
scaffold_14	skipped_exon	8451583	8452120	-	asmbl_13317	none	Trinity_GG_9713_c0_g1_i1	1	Trinity_GG_9713_c0_g1_i2	1
scaffold_2	alt_acceptor	5901398	5901399	-	asmbl_23163	none	STRG.1974.2,blat.proc3825148.chain_1908	2	STRG.1974.1,Trinity_GG_1069_c0_g1_i2,blat.proc3825148.chain_1909	3
scaffold_10	skipped_exon	6598282	6598969	-	asmbl_4478	none	STRG.12480.2	1	STRG.12480.1,blat.proc3825154.chain_991,blat.proc3825154.chain_992	3
scaffold_6	starts_in_intron	5260410	5260410	-	asmbl_48410	none	Trinity_GG_4241_c0_g2_i1,blat.proc3825150.chain_3680	2	STRG.7495.1,blat.proc3825150.chain_3679	2
scaffold_23	alternate_exon	2209573	2222393	-	asmbl_30714	none	STRG.25698.1	1	STRG.25698.4	1
scaffold_28	starts_in_intron	7243692	7243692	+	asmbl_37653	none	blat.proc3825178.chain_2942	1	STRG.29792.1,blat.proc3825178.chain_2943	2
scaffold_7	alt_acceptor	13960538	13960539	+	asmbl_50391,asmbl_50392	none	STRG.9495.2,STRG.9495.3,Trinity_GG_22592_c0_g1_i2,blat.proc3825168.chain_2024	4	STRG.9495.1,blat.proc3825168.chain_2026,blat.proc3825168.chain_2027,blat.proc3825168.chain_2028	4
scaffold_2	retained_exon	5707054	5707146	-	asmbl_23157	none	blat.proc3825148.chain_1961	1	STRG.1962.1,STRG.1962.2,blat.proc3825148.chain_1963,blat.proc3825148.chain_1964	4
scaffold_24	spliced_intron	3763914	3764002	-	asmbl_32849	none	STRG.26558.1,Trinity_GG_14855_c0_g1_i1,blat.proc3825160.chain_3680	3	Trinity_GG_14855_c0_g1_i2,blat.proc3825160.chain_3681	2
scaffold_1	ends_in_intron	5706701	5706701	+	asmbl_1754	none	blat.proc3825164.chain_499	1	STRG.372.1,blat.proc3825164.chain_496,blat.proc3825164.chain_497,blat.proc3825164.chain_498,blat.proc3825164.chain_500	5
scaffold_17	starts_in_intron	12381672	12381672	-	asmbl_18325	none	blat.proc3825158.chain_1709	1	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4,STRG.20776.5,blat.proc3825158.chain_1711	6
scaffold_5	spliced_intron	10195945	10196056	-	asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44324,asmbl_44326	none	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531,blat.proc3825150.chain_2533	8	blat.proc3825150.chain_2527	1
scaffold_20	retained_exon	3036843	3036908	+	asmbl_26516	none	STRG.23039.2	1	STRG.23039.3,Trinity_GG_30010_c0_g1_i1,blat.proc3825176.chain_208	3
scaffold_5	alt_acceptor	12811852	12811853	-	asmbl_44486	none	STRG.6509.2	1	STRG.6509.1	1
scaffold_27	retained_exon	3093282	3093327	-	asmbl_36893	none	STRG.28796.6	1	STRG.28796.5,blat.proc3825162.chain_2065	2
scaffold_14	alternate_exon	5891676	5891810	-	asmbl_13097	none	STRG.17050.2,blat.proc3825156.chain_1856	2	STRG.17050.1	1
scaffold_9	alt_acceptor	8929730	8929731	+	asmbl_54181	none	STRG.11279.2	1	STRG.11279.3	1
scaffold_15	starts_in_intron	9724046	9724046	+	asmbl_15404	none	Trinity_GG_27407_c0_g1_i1,blat.proc3825172.chain_3071	2	STRG.18486.1,STRG.18486.2,STRG.18486.3,blat.proc3825172.chain_3072	4
scaffold_6	alt_acceptor	11464785	11464786	-	asmbl_48757	none	blat.proc3825152.chain_342	1	STRG.7938.1,blat.proc3825152.chain_343	2
scaffold_13	retained_intron	4254874	4255488	+	asmbl_10768	none	STRG.15745.2,Trinity_GG_25966_c0_g1_i1,blat.proc3825172.chain_485	3	STRG.15745.1,blat.proc3825172.chain_484	2
scaffold_4	spliced_intron	4416472	4417029	+	asmbl_41249	none	Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_850	2	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_847,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	5
scaffold_21	retained_exon	9706196	9706311	-	asmbl_27962	none	STRG.24431.2	1	STRG.24431.1	1
scaffold_10	ends_in_intron	13473034	13473034	-	asmbl_4887	none	Trinity_GG_7233_c1_g1_i1,blat.proc3825154.chain_1536	2	STRG.12943.3	1
scaffold_18	retained_intron	8399580	8400469	+	asmbl_20835,asmbl_20838	none	STRG.21513.4,blat.proc3825174.chain_2583	2	STRG.21513.1,blat.proc3825174.chain_2580	2
scaffold_27	alt_donor	1958975	1958976	+	asmbl_36048	none	STRG.28677.1,blat.proc3825178.chain_1775	2	STRG.28677.2,blat.proc3825178.chain_1771,blat.proc3825178.chain_1772	3
scaffold_17	starts_in_intron	8223857	8223857	+	asmbl_18950	none	Trinity_GG_28483_c0_g1_i3,blat.proc3825174.chain_1241	2	STRG.20449.1,STRG.20449.3,blat.proc3825174.chain_1242,blat.proc3825174.chain_1245,blat.proc3825174.chain_1248	5
scaffold_9	alt_acceptor	13297189	13297190	-	asmbl_55421	none	STRG.11628.5	1	STRG.11628.1,STRG.11628.2,STRG.11628.3	3
scaffold_12	spliced_intron	13049284	13049664	-	asmbl_8911	none	STRG.15194.2,blat.proc3825154.chain_3717	2	STRG.15194.1,Trinity_GG_8498_c0_g1_i4,blat.proc3825154.chain_3715	3
scaffold_10	retained_intron	11917146	11917229	-	asmbl_4802	none	blat.proc3825154.chain_1434	1	STRG.12830.1,STRG.12830.2,blat.proc3825154.chain_1433	3
scaffold_1	starts_in_intron	11444021	11444021	+	asmbl_2111	none	Trinity_GG_17763_c0_g1_i1,blat.proc3825164.chain_853	2	STRG.753.1,blat.proc3825164.chain_855	2
scaffold_6	ends_in_intron	17161248	17161248	+	asmbl_47731	none	blat.proc3825168.chain_848	1	STRG.8416.1	1
scaffold_22	alternate_exon	5959427	5959536	-	asmbl_29298	none	STRG.24946.1,blat.proc3825160.chain_2135	2	blat.proc3825160.chain_2134	1
scaffold_8	starts_in_intron	17795060	17795060	+	asmbl_53503	none	Trinity_GG_23245_c0_g1_i3,blat.proc3825168.chain_3227	2	STRG.10695.1,blat.proc3825168.chain_3229	2
scaffold_14	alt_acceptor	4154674	4154675	+	asmbl_11979,asmbl_11983	none	STRG.16971.3,Trinity_GG_26617_c0_g1_i1	2	STRG.16971.1,STRG.16971.2,Trinity_GG_26617_c0_g1_i2,Trinity_GG_26617_c0_g1_i3	4
scaffold_9	ends_in_intron	15578854	15578854	-	asmbl_55541	none	blat.proc3825154.chain_223	1	STRG.11749.1	1
scaffold_8	retained_exon	10484123	10484272	+	asmbl_53174	none	blat.proc3825168.chain_2873	1	STRG.10286.2,blat.proc3825168.chain_2874	2
scaffold_26	alternate_exon	6704798	6706255	-	asmbl_35701	none	STRG.28371.3	1	blat.proc3825162.chain_1601	1
scaffold_1	alt_acceptor	7697554	7697555	+	asmbl_1911	none	STRG.535.1,Trinity_GG_17656_c0_g1_i2,blat.proc3825164.chain_685	3	STRG.535.2,Trinity_GG_17656_c0_g1_i1,blat.proc3825164.chain_686	3
scaffold_12	alternate_exon	1989767	1990082	-	asmbl_8314,asmbl_8316	none	STRG.14488.1,blat.proc3825154.chain_2979,blat.proc3825154.chain_2980	3	blat.proc3825154.chain_2981	1
scaffold_285	alternate_exon	1543	1628	+	asmbl_38623	none	blat.proc3825178.chain_3361	1	STRG.30262.1,blat.proc3825178.chain_3357,blat.proc3825178.chain_3358	3
scaffold_3	skipped_exon	10628322	10630201	+	asmbl_40282	none	STRG.3513.7	1	STRG.3513.2,STRG.3513.4,STRG.3513.5,STRG.3513.6,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688,blat.proc3825164.chain_3689	8
scaffold_26	starts_in_intron	5509820	5509820	+	asmbl_35010	none	Trinity_GG_32923_c0_g1_i1,blat.proc3825178.chain_1338	2	STRG.28259.1,blat.proc3825178.chain_1340	2
scaffold_22	skipped_exon	10237845	10238756	-	asmbl_29587,asmbl_29588	none	STRG.25369.2,STRG.25369.3,blat.proc3825160.chain_2496	3	STRG.25369.1,blat.proc3825160.chain_2495	2
scaffold_27	alt_acceptor	6198316	6198317	+	asmbl_36379,asmbl_36380,asmbl_36383,asmbl_36386	none	STRG.29014.1,STRG.29014.3,Trinity_GG_33374_c0_g1_i2,blat.proc3825178.chain_2228,blat.proc3825178.chain_2229	5	STRG.29014.4	1
scaffold_1	retained_exon	11745463	11745630	+	asmbl_2140	none	STRG.789.1,blat.proc3825164.chain_973	2	STRG.789.2,blat.proc3825164.chain_970	2
scaffold_25	alt_acceptor	290094	290095	+	asmbl_33321	none	STRG.27068.1	1	Trinity_GG_32268_c0_g2_i1,blat.proc3825178.chain_271	2
scaffold_10	ends_in_intron	3175695	3175695	-	asmbl_4177	none	Trinity_GG_6774_c0_g1_i2,blat.proc3825154.chain_709	2	STRG.12143.1,blat.proc3825154.chain_708	2
scaffold_3	starts_in_intron	8995753	8995753	-	asmbl_39049	none	blat.proc3825148.chain_3318	1	STRG.3431.1,STRG.3431.2,blat.proc3825148.chain_3317,blat.proc3825148.chain_3319,blat.proc3825148.chain_3320	5
scaffold_4	alternate_exon	979312	979530	-	asmbl_42353	none	STRG.4153.2,Trinity_GG_2282_c0_g1_i1,blat.proc3825150.chain_316	3	STRG.4153.1	1
scaffold_13	starts_in_intron	8830037	8830037	-	asmbl_9992	none	Trinity_GG_9044_c0_g1_i4,blat.proc3825156.chain_997	2	STRG.16159.1,Trinity_GG_9044_c0_g1_i2,Trinity_GG_9044_c0_g1_i3,blat.proc3825156.chain_996,blat.proc3825156.chain_998,blat.proc3825156.chain_999	6
scaffold_15	retained_intron	12000050	12000366	-	asmbl_14550,asmbl_14551,asmbl_14552	none	STRG.18639.2,STRG.18639.4,blat.proc3825156.chain_3533	3	STRG.18639.6,Trinity_GG_10485_c0_g1_i6,blat.proc3825156.chain_3529	3
scaffold_3	spliced_intron	17364750	17364900	-	asmbl_39552	none	blat.proc3825150.chain_179	1	blat.proc3825150.chain_175,blat.proc3825150.chain_183	2
scaffold_1	ends_in_intron	10948823	10948823	+	asmbl_2034	none	blat.proc3825164.chain_860	1	STRG.715.1,STRG.715.2,STRG.715.3,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_858,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_862,blat.proc3825164.chain_863,blat.proc3825164.chain_864	11
scaffold_21	retained_intron	2497047	2497201	+	asmbl_28396,asmbl_28397	none	STRG.23878.2,Trinity_GG_30537_c0_g1_i3,Trinity_GG_30537_c0_g1_i4,blat.proc3825176.chain_1079,blat.proc3825176.chain_1080	5	STRG.23878.1,Trinity_GG_30537_c0_g1_i2,blat.proc3825176.chain_1081,blat.proc3825176.chain_1082	4
scaffold_17	alternate_exon	9452763	9453669	+	asmbl_19084,asmbl_19085	none	STRG.20569.3,STRG.20569.4,Trinity_GG_28584_c0_g1_i1,blat.proc3825174.chain_1441	4	STRG.20569.1,Trinity_GG_28584_c0_g1_i2,Trinity_GG_28584_c0_g1_i3,Trinity_GG_28584_c0_g1_i4,blat.proc3825174.chain_1439,blat.proc3825174.chain_1442,blat.proc3825174.chain_1443	7
scaffold_6	alternate_exon	13004825	13005187	-	asmbl_48861	none	STRG.8068.7,blat.proc3825152.chain_494	2	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,STRG.8068.5,STRG.8068.6,blat.proc3825152.chain_488,blat.proc3825152.chain_491,blat.proc3825152.chain_492,blat.proc3825152.chain_493,blat.proc3825152.chain_495,blat.proc3825152.chain_496	12
scaffold_17	retained_intron	3998088	3998274	+	asmbl_18753,asmbl_18754,asmbl_18755,asmbl_18757,asmbl_18759,asmbl_18760	none	STRG.20160.1,STRG.20160.3,STRG.20160.4,blat.proc3825174.chain_1031,blat.proc3825174.chain_1032,blat.proc3825174.chain_1034,blat.proc3825174.chain_1035	7	STRG.20160.2,blat.proc3825174.chain_1033	2
scaffold_9	spliced_intron	2468905	2469096	-	asmbl_54875	none	STRG.10892.1,blat.proc3825152.chain_3157	2	blat.proc3825152.chain_3156	1
scaffold_13	spliced_intron	381828	381913	-	asmbl_9322	none	STRG.15437.4,blat.proc3825156.chain_262	2	STRG.15437.2,blat.proc3825156.chain_261	2
scaffold_19	retained_intron	13029049	13029345	-	asmbl_22587	none	Trinity_GG_12611_c1_g1_i2,blat.proc3825158.chain_3483	2	STRG.22625.1,STRG.22625.3,Trinity_GG_12611_c1_g1_i1,blat.proc3825158.chain_3482	4
scaffold_3	starts_in_intron	17327691	17327691	+	asmbl_40665	none	Trinity_GG_19543_c0_g1_i3,blat.proc3825166.chain_476	2	STRG.3961.1	1
scaffold_23	starts_in_intron	5733472	5733472	+	asmbl_31596	none	Trinity_GG_31589_c1_g1_i1,blat.proc3825176.chain_2814	2	STRG.25943.1,STRG.25943.2,Trinity_GG_31589_c0_g1_i1,Trinity_GG_31589_c0_g1_i2,blat.proc3825176.chain_2811,blat.proc3825176.chain_2813	6
scaffold_6	alt_acceptor	1740688	1740689	+	asmbl_46732,asmbl_46733	none	STRG.7229.1,blat.proc3825150.chain_3232	2	blat.proc3825150.chain_3229	1
scaffold_16	alt_acceptor	8650378	8650379	+	asmbl_16435,asmbl_16436	none	STRG.19493.1,STRG.19493.2,blat.proc3825174.chain_411,blat.proc3825174.chain_414	4	STRG.19493.3,blat.proc3825174.chain_415	2
scaffold_7	alt_acceptor	12271203	12271204	+	asmbl_50230,asmbl_50233,asmbl_50235	none	STRG.9326.2,STRG.9326.4,STRG.9326.6,Trinity_GG_22467_c0_g1_i4,Trinity_GG_22467_c0_g1_i5,blat.proc3825168.chain_1798,blat.proc3825168.chain_1806	7	STRG.9326.3,Trinity_GG_22467_c0_g1_i1,Trinity_GG_22467_c0_g1_i3,blat.proc3825168.chain_1802	4
scaffold_14	spliced_intron	9272764	9273523	-	asmbl_13360,asmbl_13362,asmbl_13364,asmbl_13366	none	STRG.17338.1,STRG.17338.2,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204	6	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203	2
scaffold_4	alt_acceptor	10873308	10873309	-	asmbl_42863	none	blat.proc3825150.chain_988	1	STRG.4808.1,blat.proc3825150.chain_986,blat.proc3825150.chain_987,blat.proc3825150.chain_989	4
scaffold_12	retained_intron	1066676	1067984	-	asmbl_8289,asmbl_8290,asmbl_8291	none	STRG.14451.2,Trinity_GG_8066_c0_g1_i2,blat.proc3825154.chain_2967,blat.proc3825154.chain_2968	4	STRG.14451.1,blat.proc3825154.chain_2966	2
scaffold_21	retained_intron	6620794	6620944	+	asmbl_28672,asmbl_28677	none	Trinity_GG_30735_c0_g1_i1,Trinity_GG_30735_c0_g1_i2,blat.proc3825176.chain_1431,blat.proc3825176.chain_1432	4	STRG.24189.1	1
scaffold_5	starts_in_intron	15044234	15044234	-	asmbl_44638	none	STRG.6698.3	1	STRG.6698.2,STRG.6698.4,STRG.6698.5,Trinity_GG_3732_c0_g1_i1,Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2826,blat.proc3825150.chain_2827	7
scaffold_19	starts_in_intron	12107686	12107686	-	asmbl_22455,asmbl_22458	none	STRG.22539.2,STRG.22539.3,blat.proc3825158.chain_3188	3	STRG.22539.1,STRG.22539.4,STRG.22539.5,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	5
scaffold_4	alternate_exon	4096236	4096420	+	asmbl_41226	none	blat.proc3825166.chain_710	1	blat.proc3825166.chain_709	1
scaffold_12	alternate_exon	16521604	16529748	-	asmbl_9128,asmbl_9130,asmbl_9131	none	STRG.15414.1,STRG.15414.2,STRG.15414.3,Trinity_GG_8632_c0_g1_i2,blat.proc3825156.chain_237	5	Trinity_GG_8632_c0_g1_i1,blat.proc3825156.chain_236	2
scaffold_25	alt_acceptor	5557699	5557700	-	asmbl_34259	none	STRG.27452.1,blat.proc3825162.chain_834	2	STRG.27452.3	1
scaffold_26	alt_donor	10154163	10154164	+	asmbl_35299	none	STRG.28534.1	1	STRG.28534.2,STRG.28534.3,Trinity_GG_33098_c0_g1_i1,Trinity_GG_33098_c0_g1_i2,blat.proc3825178.chain_1662,blat.proc3825178.chain_1663,blat.proc3825178.chain_1664	7
scaffold_28	spliced_intron	9808981	9809004	+	asmbl_37811	none	STRG.30007.2	1	STRG.30007.1,Trinity_GG_33922_c0_g1_i1,blat.proc3825178.chain_3143	3
scaffold_12	spliced_intron	5636130	5637493	-	asmbl_8516	none	STRG.14715.2,blat.proc3825154.chain_3251	2	STRG.14715.1,blat.proc3825154.chain_3252	2
scaffold_16	spliced_intron	6198531	6198916	+	asmbl_16300	none	STRG.19371.1	1	STRG.19371.2,blat.proc3825174.chain_251	2
scaffold_7	spliced_intron	1235897	1236136	+	asmbl_49605	none	STRG.8637.6	1	STRG.8637.2	1
scaffold_26	alt_acceptor	10121650	10121651	-	asmbl_35816,asmbl_35820,asmbl_35821	none	STRG.28530.1,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710,blat.proc3825162.chain_1714	5	STRG.28530.2,Trinity_GG_15946_c0_g1_i3,blat.proc3825162.chain_1715	3
scaffold_3	alternate_exon	10304147	10306419	+	asmbl_40262,asmbl_40265	none	STRG.3476.1,Trinity_GG_19250_c1_g1_i1,Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700,blat.proc3825164.chain_3702	5	Trinity_GG_19250_c1_g1_i3,blat.proc3825164.chain_3698	2
scaffold_21	alternate_exon	10008912	10010472	-	asmbl_28001	none	STRG.24464.1,blat.proc3825160.chain_1644	2	blat.proc3825160.chain_1645	1
scaffold_27	retained_intron	1424171	1424344	-	asmbl_36759	none	blat.proc3825162.chain_1911	1	STRG.28638.1,blat.proc3825162.chain_1910	2
scaffold_16	starts_in_intron	212856	212856	+	asmbl_16009	none	Trinity_GG_27739_c0_g2_i1,blat.proc3825172.chain_3676	2	STRG.19016.1,STRG.19016.2,blat.proc3825172.chain_3674,blat.proc3825172.chain_3675	4
scaffold_2	alternate_exon	18307271	18307364	-	asmbl_23775	none	STRG.2714.2,blat.proc3825148.chain_2641	2	STRG.2714.1,blat.proc3825148.chain_2640	2
scaffold_18	retained_exon	3917647	3918460	-	asmbl_19782	none	blat.proc3825158.chain_2160	1	STRG.21203.2	1
scaffold_12	retained_intron	110425	111191	-	asmbl_8273	none	STRG.14422.2,Trinity_GG_8052_c0_g2_i1,blat.proc3825154.chain_2944	3	STRG.14422.1,blat.proc3825154.chain_2943	2
scaffold_16	alt_donor	433711	433712	-	asmbl_16870,asmbl_16877	none	blat.proc3825158.chain_202,blat.proc3825158.chain_204	2	blat.proc3825158.chain_196	1
scaffold_28	alt_acceptor	155670	155671	-	asmbl_37898	none	STRG.29243.2	1	STRG.29243.1	1
scaffold_9	alt_acceptor	4206160	4206161	+	asmbl_53940	none	STRG.11024.4,blat.proc3825168.chain_3484	2	STRG.11024.3	1
scaffold_16	alt_donor	5412596	5412597	+	asmbl_16215	none	STRG.19292.1,Trinity_GG_27872_c0_g1_i1,blat.proc3825174.chain_189	3	STRG.19292.2	1
scaffold_11	retained_intron	8100269	8100367	+	asmbl_5725,asmbl_5726	none	Trinity_GG_24917_c0_g1_i2,Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342,blat.proc3825170.chain_2345	4	STRG.13822.1,STRG.13822.2,STRG.13822.3,STRG.13822.4,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	12
scaffold_12	alternate_exon	6414305	6414581	+	asmbl_7683	none	STRG.14753.3	1	STRG.14753.1,STRG.14753.2,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274	4
scaffold_18	alt_acceptor	1648395	1648396	-	asmbl_19631	none	blat.proc3825158.chain_1913	1	STRG.21046.1,STRG.21046.2,blat.proc3825158.chain_1912	3
scaffold_21	starts_in_intron	4972038	4972038	+	asmbl_28551	none	blat.proc3825176.chain_1257	1	STRG.24041.1,STRG.24041.2,blat.proc3825176.chain_1258	3
scaffold_17	ends_in_intron	8314973	8314973	-	asmbl_18088	none	blat.proc3825158.chain_1449	1	STRG.20455.2,blat.proc3825158.chain_1448	2
scaffold_11	alternate_exon	14177993	14178113	-	asmbl_7157	none	STRG.14239.2,blat.proc3825154.chain_2761	2	STRG.14239.1,blat.proc3825154.chain_2760	2
scaffold_4	spliced_intron	16912206	16912455	+	asmbl_42010	none	STRG.5280.3	1	STRG.5280.4	1
scaffold_16	alt_acceptor	8312926	8312927	+	asmbl_16390	none	STRG.19463.2	1	STRG.19463.1,Trinity_GG_27964_c0_g1_i1,blat.proc3825174.chain_364	3
scaffold_16	spliced_intron	6196265	6196569	+	asmbl_16292,asmbl_16293,asmbl_16297	none	STRG.19370.1,STRG.19370.2,blat.proc3825174.chain_257,blat.proc3825174.chain_258,blat.proc3825174.chain_260	5	blat.proc3825174.chain_261	1
scaffold_22	alternate_exon	5817820	5818059	-	asmbl_29287	none	STRG.24930.2	1	STRG.24930.1	1
scaffold_26	starts_in_intron	8592162	8592162	-	asmbl_35740	none	blat.proc3825162.chain_1638	1	STRG.28447.1,blat.proc3825162.chain_1637	2
scaffold_16	starts_in_intron	136730	136730	-	asmbl_16832	none	Trinity_GG_10673_c0_g1_i1,blat.proc3825158.chain_120	2	STRG.19002.1,Trinity_GG_10673_c0_g1_i2,blat.proc3825158.chain_121	3
scaffold_6	starts_in_intron	6765994	6765994	+	asmbl_47007	none	STRG.7589.3,Trinity_GG_21450_c2_g1_i1,blat.proc3825168.chain_8	3	STRG.7589.2	1
scaffold_11	skipped_exon	1143485	1145193	+	asmbl_5322	none	STRG.13310.2	1	STRG.13310.1,blat.proc3825170.chain_1852,blat.proc3825170.chain_1853	3
scaffold_21	alternate_exon	5791119	5791543	-	asmbl_27699	none	STRG.24109.2,blat.proc3825160.chain_1153	2	STRG.24109.1,blat.proc3825160.chain_1154	2
scaffold_7	ends_in_intron	7468094	7468094	+	asmbl_49925	none	STRG.8998.1,blat.proc3825168.chain_1470	2	STRG.8998.2,blat.proc3825168.chain_1469	2
scaffold_1	alt_donor	9516028	9516029	-	asmbl_541	none	blat.proc3825148.chain_628	1	STRG.637.4,Trinity_GG_338_c0_g1_i2,blat.proc3825148.chain_629	3
scaffold_2	alternate_exon	5704789	5707897	-	asmbl_23153,asmbl_23154,asmbl_23157	none	STRG.1962.1,STRG.1962.2,blat.proc3825148.chain_1961,blat.proc3825148.chain_1963,blat.proc3825148.chain_1964	5	STRG.1962.3	1
scaffold_21	retained_intron	11964407	11964472	-	asmbl_28143	none	Trinity_GG_13785_c0_g1_i1,blat.proc3825160.chain_1851	2	STRG.24652.1	1
scaffold_26	spliced_intron	6663772	6663872	+	asmbl_35101,asmbl_35103	none	STRG.28377.1,STRG.28377.2,blat.proc3825178.chain_1424	3	STRG.28377.3,Trinity_GG_32974_c0_g1_i1,blat.proc3825178.chain_1423	3
scaffold_16	starts_in_intron	1158727	1158727	+	asmbl_16071	none	Trinity_GG_27778_c0_g1_i2	1	STRG.19081.1	1
scaffold_8	skipped_exon	11853070	11855193	+	asmbl_53278,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53290,asmbl_53293	none	STRG.10390.3,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	4	STRG.10390.4,STRG.10390.5	2
scaffold_5	starts_in_intron	18698530	18698530	-	asmbl_44856,asmbl_44857	none	blat.proc3825150.chain_3102,blat.proc3825150.chain_3103	2	STRG.6997.1,STRG.6997.2,STRG.6997.3	3
scaffold_6	alt_donor	16054108	16054109	-	asmbl_49098	none	STRG.8346.1	1	STRG.8346.2,blat.proc3825152.chain_755	2
scaffold_5	spliced_intron	966879	967824	-	asmbl_43800	none	STRG.5644.1	1	STRG.5644.2,Trinity_GG_3137_c0_g1_i1,Trinity_GG_3137_c0_g1_i3,Trinity_GG_3137_c1_g1_i1,blat.proc3825150.chain_1791,blat.proc3825150.chain_1795	6
scaffold_18	alt_acceptor	8399398	8399399	+	asmbl_20834,asmbl_20836	none	STRG.21513.2,blat.proc3825174.chain_2581	2	STRG.21513.1,STRG.21513.3,blat.proc3825174.chain_2580	3
scaffold_28	starts_in_intron	5217756	5217756	-	asmbl_38256	none	STRG.29673.1	1	STRG.29673.2	1
scaffold_24	retained_exon	6291224	6291262	+	asmbl_32298	none	blat.proc3825176.chain_3635	1	STRG.26684.1,blat.proc3825176.chain_3634	2
scaffold_17	spliced_intron	9533968	9534048	+	asmbl_19102,asmbl_19103,asmbl_19104,asmbl_19105,asmbl_19109	none	STRG.20578.1,STRG.20578.2,STRG.20578.3,STRG.20578.4,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1402	8	Trinity_GG_28562_c0_g1_i3,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	3
scaffold_560	retained_intron	741	875	-	asmbl_46576	none	Trinity_GG_17043_c0_g1_i2,blat.proc3825162.chain_3493	2	STRG.30375.1	1
scaffold_11	alternate_exon	6249974	6251733	+	asmbl_5621	none	STRG.13692.1,blat.proc3825170.chain_2239	2	blat.proc3825170.chain_2242	1
scaffold_8	retained_intron	12693248	12693352	+	asmbl_53332	none	blat.proc3825168.chain_3010	1	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3009	3
scaffold_5	alternate_exon	16846236	16849313	-	asmbl_44783	none	STRG.6872.1,Trinity_GG_3848_c0_g1_i1,blat.proc3825150.chain_2985,blat.proc3825150.chain_3038	4	STRG.6872.2,Trinity_GG_3816_c2_g1_i1,blat.proc3825150.chain_2984,blat.proc3825150.chain_2987	4
scaffold_7	spliced_intron	1236503	1236590	+	asmbl_49588,asmbl_49590,asmbl_49592,asmbl_49593,asmbl_49605,asmbl_49606	none	STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i2	3	STRG.8637.1,STRG.8637.2,Trinity_GG_22033_c0_g1_i15,Trinity_GG_22033_c0_g1_i4	4
scaffold_1	alt_acceptor	12956816	12956817	+	asmbl_2284	none	STRG.924.3,blat.proc3825164.chain_1091	2	STRG.924.1,STRG.924.2,blat.proc3825164.chain_1090	3
scaffold_5	spliced_intron	5064190	5064837	-	asmbl_44026,asmbl_44027	none	STRG.5964.1,STRG.5964.2,Trinity_GG_3315_c0_g1_i1,Trinity_GG_3315_c0_g1_i4,blat.proc3825150.chain_2089,blat.proc3825150.chain_2090	6	Trinity_GG_3315_c0_g1_i2,blat.proc3825150.chain_2091	2
scaffold_14	spliced_intron	583074	583762	+	asmbl_11772	none	STRG.16740.3	1	STRG.16740.1,STRG.16740.4,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	4
scaffold_8	alternate_exon	2684018	2690100	+	asmbl_52736	none	STRG.9810.1,blat.proc3825168.chain_2279	2	STRG.9810.3	1
scaffold_15	alternate_exon	8044411	8044598	-	asmbl_14327	none	STRG.18380.1,blat.proc3825156.chain_3224	2	STRG.18380.2	1
scaffold_10	alternate_exon	770326	770429	+	asmbl_2870,asmbl_2871	none	STRG.11971.1,blat.proc3825170.chain_654	2	STRG.11971.6	1
scaffold_12	spliced_intron	15013574	15013828	-	asmbl_9032,asmbl_9033,asmbl_9035,asmbl_9036	none	STRG.15302.1,STRG.15302.2,blat.proc3825156.chain_106,blat.proc3825156.chain_107,blat.proc3825156.chain_109,blat.proc3825156.chain_110	6	blat.proc3825156.chain_108	1
scaffold_13	alt_donor	11755316	11755317	+	asmbl_11308	none	STRG.16317.1	1	STRG.16317.2	1
scaffold_5	alt_acceptor	7890826	7890827	+	asmbl_45520	none	STRG.6168.2	1	STRG.6168.1,blat.proc3825166.chain_2303	2
scaffold_8	alt_acceptor	9695264	9695265	+	asmbl_53101	none	STRG.10217.2	1	STRG.10217.1,STRG.10217.3,blat.proc3825168.chain_2768,blat.proc3825168.chain_2769	4
scaffold_16	retained_intron	3707062	3707156	+	asmbl_16148	none	Trinity_GG_27833_c1_g1_i3,blat.proc3825174.chain_104	2	STRG.19177.1,blat.proc3825174.chain_106,blat.proc3825174.chain_107,blat.proc3825174.chain_108	4
scaffold_1	alt_acceptor	13883303	13883304	-	asmbl_852,asmbl_853,asmbl_854,asmbl_857	none	STRG.996.1,STRG.996.2,STRG.996.3,blat.proc3825148.chain_1003,blat.proc3825148.chain_1004,blat.proc3825148.chain_1005	6	STRG.996.4	1
scaffold_20	skipped_exon	9185074	9185347	+	asmbl_26840	none	STRG.23464.1,blat.proc3825176.chain_621	2	blat.proc3825160.chain_533	1
scaffold_6	starts_in_intron	13169421	13169421	-	asmbl_48883,asmbl_48885	none	STRG.8074.2,blat.proc3825152.chain_474,blat.proc3825152.chain_477	3	STRG.8074.1,blat.proc3825152.chain_470,blat.proc3825152.chain_472,blat.proc3825152.chain_475,blat.proc3825152.chain_476	5
scaffold_26	alt_donor	4141796	4141797	+	asmbl_34873	none	STRG.28122.4	1	STRG.28122.1,STRG.28122.2,STRG.28122.3	3
scaffold_17	spliced_intron	5403268	5403361	-	asmbl_17933	none	STRG.20259.2	1	STRG.20259.1,Trinity_GG_11387_c0_g1_i2,blat.proc3825158.chain_1297	3
scaffold_15	spliced_intron	15179285	15179381	+	asmbl_15732,asmbl_15734	none	blat.proc3825172.chain_3526,blat.proc3825172.chain_3527	2	blat.proc3825172.chain_3523,blat.proc3825172.chain_3532	2
scaffold_10	spliced_intron	11908965	11909113	+	asmbl_3501,asmbl_3504	none	STRG.12828.1,Trinity_GG_24345_c0_g1_i2,blat.proc3825170.chain_1352,blat.proc3825170.chain_1355	4	STRG.12828.2,Trinity_GG_24345_c0_g1_i3,Trinity_GG_24345_c0_g1_i4,blat.proc3825170.chain_1353,blat.proc3825170.chain_1354	5
scaffold_12	starts_in_intron	2982417	2982417	+	asmbl_7535	none	blat.proc3825170.chain_3101	1	STRG.14534.1,blat.proc3825170.chain_3100	2
scaffold_21	starts_in_intron	403076	403076	-	asmbl_27305	none	Trinity_GG_13226_c0_g1_i6,blat.proc3825160.chain_849	2	STRG.23733.1,Trinity_GG_13226_c0_g1_i1,blat.proc3825160.chain_853	3
scaffold_2	alt_acceptor	6752493	6752494	-	asmbl_23228	none	STRG.2026.2,blat.proc3825148.chain_2009	2	STRG.2026.1,Trinity_GG_1117_c0_g1_i1,blat.proc3825148.chain_2006,blat.proc3825148.chain_2008	4
scaffold_16	alt_acceptor	9360617	9360618	-	asmbl_17281	none	STRG.19532.2	1	STRG.19532.1,Trinity_GG_10975_c0_g1_i1,blat.proc3825158.chain_677	3
scaffold_14	starts_in_intron	210738	210738	-	asmbl_12798	none	Trinity_GG_9359_c0_g1_i1,blat.proc3825156.chain_1535	2	STRG.16713.1,Trinity_GG_9359_c0_g2_i2,blat.proc3825156.chain_1536	3
scaffold_8	retained_intron	5433999	5434119	+	asmbl_52886	none	blat.proc3825168.chain_2431	1	STRG.9974.1,STRG.9974.2,blat.proc3825168.chain_2432	3
scaffold_19	spliced_intron	8219321	8219725	-	asmbl_22284,asmbl_22285	none	STRG.22275.1,STRG.22275.3,blat.proc3825158.chain_3083	3	blat.proc3825158.chain_3084,blat.proc3825158.chain_3085	2
scaffold_23	alt_donor	2415143	2415144	+	asmbl_31404	none	STRG.25716.4,blat.proc3825176.chain_2677	2	STRG.25716.2,STRG.25716.3	2
scaffold_22	skipped_exon	10681034	10682009	-	asmbl_29615,asmbl_29616	none	STRG.25415.1,STRG.25415.2,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608	4	blat.proc3825160.chain_2610	1
scaffold_16	skipped_exon	15218961	15220712	+	asmbl_16721	none	STRG.19882.1	1	STRG.19882.2,blat.proc3825174.chain_761	2
scaffold_17	alt_acceptor	4688374	4688375	-	asmbl_17884	none	STRG.20205.2,blat.proc3825158.chain_1198	2	STRG.20205.1,blat.proc3825158.chain_1199	2
scaffold_19	alt_acceptor	11472684	11472685	-	asmbl_22395,asmbl_22397	none	STRG.22481.2,STRG.22481.4,blat.proc3825158.chain_3256,blat.proc3825158.chain_3257	4	STRG.22481.1,blat.proc3825158.chain_3258	2
scaffold_10	starts_in_intron	10270906	10270906	+	asmbl_3410	none	blat.proc3825170.chain_1326	1	STRG.12715.1	1
scaffold_8	spliced_intron	11850111	11850658	+	asmbl_53279,asmbl_53282	none	STRG.10390.4,blat.proc3825168.chain_3016,blat.proc3825168.chain_3025	3	STRG.10390.2,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021	3
scaffold_10	alternate_exon	17154678	17156518	-	asmbl_5037	none	STRG.13164.1,blat.proc3825154.chain_1757	2	blat.proc3825154.chain_1756	1
scaffold_20	spliced_intron	7806737	7806925	-	asmbl_25922,asmbl_25923	none	STRG.23331.1,STRG.23331.2,blat.proc3825160.chain_453,blat.proc3825160.chain_454	4	Trinity_GG_13035_c1_g1_i1,blat.proc3825160.chain_455	2
scaffold_15	retained_exon	15347792	15347915	+	asmbl_15754	none	STRG.18919.1	1	STRG.18919.2	1
scaffold_11	retained_intron	262676	262775	-	asmbl_6390	none	blat.proc3825154.chain_1850	1	STRG.13270.1,blat.proc3825154.chain_1851,blat.proc3825154.chain_1852	3
scaffold_4	skipped_exon	3340468	3342662	+	asmbl_41180	none	STRG.4263.3	1	STRG.4263.1,Trinity_GG_19693_c0_g1_i2,blat.proc3825166.chain_733	3
scaffold_11	alt_donor	5716355	5716356	+	asmbl_5583	none	STRG.13636.1,Trinity_GG_24819_c0_g1_i1,blat.proc3825170.chain_2174	3	Trinity_GG_24819_c0_g1_i2,blat.proc3825170.chain_2175	2
scaffold_8	alternate_exon	14404971	14411940	-	asmbl_52311	none	STRG.10529.1,blat.proc3825152.chain_2648	2	STRG.10529.2	1
scaffold_9	starts_in_intron	10908432	10908432	+	asmbl_54303	none	Trinity_GG_23620_c0_g1_i2,blat.proc3825170.chain_102	2	STRG.11402.1,blat.proc3825170.chain_101	2
scaffold_500	spliced_intron	2254	2461	+	asmbl_46492,asmbl_46496	none	STRG.30357.5,blat.proc3825178.chain_3440	2	STRG.30357.1,STRG.30357.3,STRG.30357.4,STRG.30357.6,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445,blat.proc3825178.chain_3446	7
scaffold_5	alt_donor	3773189	3773190	+	asmbl_45236	none	STRG.5842.2,blat.proc3825166.chain_2078	2	STRG.5842.3,blat.proc3825166.chain_2079	2
scaffold_4	spliced_intron	17031495	17031641	+	asmbl_42020,asmbl_42021	none	STRG.5301.2,STRG.5301.3,blat.proc3825166.chain_1650	3	blat.proc3825166.chain_1647	1
scaffold_14	retained_intron	11944578	11944701	+	asmbl_12409	none	Trinity_GG_26949_c0_g1_i3,blat.proc3825172.chain_2262	2	STRG.17536.1,Trinity_GG_26949_c0_g1_i1,blat.proc3825172.chain_2263	3
scaffold_5	retained_intron	19031567	19031895	-	asmbl_44888	none	STRG.7022.6,blat.proc3825150.chain_3129	2	STRG.7022.2,STRG.7022.4,Trinity_GG_3910_c0_g1_i11,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133,blat.proc3825150.chain_3135	6
scaffold_13	ends_in_intron	2333571	2333571	+	asmbl_10609	none	blat.proc3825172.chain_232	1	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.6,STRG.15564.7	6
scaffold_15	retained_intron	5144744	5144821	+	asmbl_15192	none	blat.proc3825172.chain_2885	1	STRG.18222.1,blat.proc3825172.chain_2886,blat.proc3825172.chain_2887	3
scaffold_14	spliced_intron	5791100	5791212	-	asmbl_13092	none	STRG.17052.1,blat.proc3825156.chain_1796	2	blat.proc3825156.chain_1795	1
scaffold_28	spliced_intron	414159	414254	+	asmbl_37280	none	blat.proc3825178.chain_2496	1	STRG.29258.1,Trinity_GG_33553_c0_g1_i2,blat.proc3825178.chain_2495	3
scaffold_17	starts_in_intron	8880489	8880489	+	asmbl_19041	none	Trinity_GG_28545_c1_g1_i1,blat.proc3825174.chain_1361	2	STRG.20508.1,blat.proc3825174.chain_1359	2
scaffold_27	starts_in_intron	4510104	4510104	+	asmbl_36297	none	STRG.28904.3,blat.proc3825178.chain_2106	2	STRG.28904.1,blat.proc3825178.chain_2104,blat.proc3825178.chain_2105	3
scaffold_7	ends_in_intron	5097387	5097387	+	asmbl_49783	none	Trinity_GG_22186_c0_g2_i1,blat.proc3825168.chain_1323	2	STRG.8853.1,blat.proc3825168.chain_1322	2
scaffold_17	starts_in_intron	13964704	13964704	-	asmbl_18391	none	STRG.20883.3,blat.proc3825158.chain_1799	2	STRG.20883.1,STRG.20883.2,blat.proc3825158.chain_1797,blat.proc3825158.chain_1798	4
scaffold_13	retained_intron	2571207	2571311	+	asmbl_10623,asmbl_10625,asmbl_10626,asmbl_10627,asmbl_10628	none	STRG.15563.1,STRG.15563.2,Trinity_GG_25871_c0_g1_i4,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_323,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_326	8	STRG.15563.3,Trinity_GG_25871_c0_g1_i5,blat.proc3825172.chain_322,blat.proc3825172.chain_327	4
scaffold_4	retained_intron	9343784	9343976	-	asmbl_42809	none	Trinity_GG_2650_c0_g1_i7,blat.proc3825150.chain_948	2	STRG.4735.1,blat.proc3825150.chain_946,blat.proc3825150.chain_947,blat.proc3825150.chain_949	4
scaffold_17	alt_donor	1719085	1719086	-	asmbl_17728	none	STRG.20006.1,blat.proc3825158.chain_1003	2	STRG.20006.2,STRG.20006.3	2
scaffold_6	retained_exon	14196364	14197561	+	asmbl_47591	none	STRG.8185.1,blat.proc3825168.chain_610,blat.proc3825168.chain_612	3	STRG.8185.2,blat.proc3825168.chain_613	2
scaffold_19	spliced_intron	13155009	13155525	-	asmbl_22605	none	STRG.22639.1,blat.proc3825158.chain_3472	2	STRG.22639.3	1
scaffold_18	alt_donor	9682744	9682745	-	asmbl_20080	none	STRG.21580.1	1	STRG.21580.2,STRG.21580.3,blat.proc3825158.chain_2490	3
scaffold_6	alternate_exon	6012484	6013226	-	asmbl_48447	none	STRG.7550.2,blat.proc3825150.chain_3728	2	STRG.7550.1	1
scaffold_10	starts_in_intron	5156069	5156069	-	asmbl_4344	none	Trinity_GG_6894_c0_g1_i1,blat.proc3825154.chain_906	2	STRG.12337.1,Trinity_GG_6894_c0_g1_i2,blat.proc3825154.chain_907	3
scaffold_9	alternate_exon	15278467	15278679	+	asmbl_54550	none	STRG.11722.1,blat.proc3825170.chain_506	2	STRG.11722.2,blat.proc3825170.chain_507	2
scaffold_7	alt_donor	12650679	12650680	-	asmbl_51262	none	STRG.9385.3	1	STRG.9385.1,blat.proc3825152.chain_1733	2
scaffold_14	spliced_intron	15345450	15346296	-	asmbl_13711	none	STRG.17765.1,Trinity_GG_9998_c0_g1_i4,blat.proc3825156.chain_2605	3	STRG.17765.2	1
scaffold_20	alternate_exon	11774945	11776583	-	asmbl_26196	none	STRG.23689.1,Trinity_GG_13189_c0_g1_i2,blat.proc3825160.chain_769	3	STRG.23689.3,Trinity_GG_13189_c0_g1_i1,blat.proc3825160.chain_768	3
scaffold_9	spliced_intron	6920728	6921103	-	asmbl_55099,asmbl_55103	none	STRG.11207.2,blat.proc3825152.chain_3454,blat.proc3825152.chain_3455	3	STRG.11207.1,blat.proc3825152.chain_3453	2
scaffold_23	retained_exon	8066624	8066699	-	asmbl_31074	none	STRG.26120.2,blat.proc3825160.chain_3285	2	STRG.26120.1,blat.proc3825160.chain_3286	2
scaffold_4	alt_acceptor	14111068	14111069	+	asmbl_41847	none	STRG.5030.4,blat.proc3825166.chain_1417	2	STRG.5030.1,STRG.5030.2,STRG.5030.3,blat.proc3825166.chain_1415,blat.proc3825166.chain_1416,blat.proc3825166.chain_1418	6
scaffold_18	retained_intron	5606473	5606848	+	asmbl_20593	none	Trinity_GG_29049_c0_g1_i2,blat.proc3825174.chain_2264	2	STRG.21316.1,blat.proc3825174.chain_2263	2
scaffold_6	alt_acceptor	12920081	12920082	+	asmbl_47452	none	STRG.8050.2	1	STRG.8050.1,blat.proc3825168.chain_421	2
scaffold_17	ends_in_intron	13526453	13526453	+	asmbl_19331	none	blat.proc3825174.chain_1741	1	STRG.20838.1,blat.proc3825174.chain_1737	2
scaffold_11	retained_intron	3095645	3095846	+	asmbl_5403	none	STRG.13433.1	1	STRG.13433.2	1
scaffold_17	starts_in_intron	684082	684082	+	asmbl_18561	none	STRG.19922.2	1	STRG.19922.1,blat.proc3825174.chain_799	2
scaffold_12	alt_acceptor	14186291	14186292	-	asmbl_8995,asmbl_8997,asmbl_8999	none	STRG.15259.1,STRG.15259.2,blat.proc3825156.chain_61,blat.proc3825156.chain_62	4	STRG.15259.3	1
scaffold_10	retained_intron	3757724	3757863	-	asmbl_4220,asmbl_4221,asmbl_4222	none	STRG.12208.1,STRG.12208.2,STRG.12208.4	3	STRG.12208.3	1
scaffold_24	alternate_exon	5323162	5323277	-	asmbl_32898	none	STRG.26622.2	1	STRG.26622.1,blat.proc3825162.chain_9	2
scaffold_13	retained_intron	2568046	2569763	+	asmbl_10623,asmbl_10626,asmbl_10627,asmbl_10628,asmbl_10629	none	STRG.15563.1,STRG.15563.2,blat.proc3825172.chain_323,blat.proc3825172.chain_324,blat.proc3825172.chain_327	5	STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_325	5
scaffold_3	retained_intron	5774893	5775417	-	asmbl_38859,asmbl_38861	none	STRG.3244.2,STRG.3244.4,Trinity_GG_1733_c0_g1_i4,blat.proc3825148.chain_3038,blat.proc3825148.chain_3039	5	STRG.3244.1,STRG.3244.3,blat.proc3825148.chain_3041	3
scaffold_14	starts_in_intron	7436993	7436993	-	asmbl_13198	none	STRG.17181.2,blat.proc3825156.chain_1975	2	STRG.17181.1	1
scaffold_21	alt_donor	7287144	7287145	-	asmbl_27790	none	STRG.24249.3,Trinity_GG_13530_c0_g1_i2,blat.proc3825160.chain_1389	3	STRG.24249.1,STRG.24249.2,Trinity_GG_13530_c0_g1_i1,blat.proc3825160.chain_1388	4
scaffold_434	starts_in_intron	2068	2068	-	asmbl_43704	none	blat.proc3825162.chain_3449	1	STRG.30328.1,Trinity_GG_17015_c0_g1_i2,blat.proc3825162.chain_3450	3
scaffold_26	starts_in_intron	5662697	5662697	-	asmbl_35614	none	blat.proc3825162.chain_1530	1	STRG.28272.1,STRG.28272.2,STRG.28272.3,blat.proc3825162.chain_1526,blat.proc3825162.chain_1527,blat.proc3825162.chain_1528,blat.proc3825162.chain_1529,blat.proc3825162.chain_1532	8
scaffold_1	skipped_exon	3494601	3495178	-	asmbl_149,asmbl_153,asmbl_154	none	blat.proc3825148.chain_214,blat.proc3825148.chain_219,blat.proc3825148.chain_221	3	STRG.221.1,STRG.221.2,STRG.221.3,STRG.221.4,blat.proc3825148.chain_213,blat.proc3825148.chain_215,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_218,blat.proc3825148.chain_220	10
scaffold_23	skipped_exon	5078954	5081541	-	asmbl_30881	none	STRG.25891.2,blat.proc3825160.chain_3069	2	STRG.25891.1,blat.proc3825160.chain_3068	2
scaffold_23	ends_in_intron	5202782	5202782	-	asmbl_30899	none	Trinity_GG_14500_c0_g1_i1,blat.proc3825160.chain_3078	2	STRG.25900.1,Trinity_GG_14500_c0_g1_i3,blat.proc3825160.chain_3079	3
scaffold_19	starts_in_intron	6407689	6407689	-	asmbl_22214	none	STRG.22169.2,blat.proc3825158.chain_3004	2	STRG.22169.1,STRG.22169.3,blat.proc3825158.chain_3002,blat.proc3825158.chain_3003	4
scaffold_14	ends_in_intron	6647338	6647338	-	asmbl_13143	none	STRG.17124.2,blat.proc3825156.chain_1966	2	STRG.17124.1	1
scaffold_14	alt_donor	6277129	6277130	-	asmbl_13112,asmbl_13113,asmbl_13114,asmbl_13115	none	STRG.17077.1,STRG.17077.2,STRG.17077.3,STRG.17077.4,blat.proc3825156.chain_1798,blat.proc3825156.chain_1800,blat.proc3825156.chain_1801	7	blat.proc3825156.chain_1799	1
scaffold_13	retained_intron	3733773	3733964	+	asmbl_10736,asmbl_10737	none	blat.proc3825172.chain_443,blat.proc3825172.chain_448	2	STRG.15695.1,blat.proc3825172.chain_441	2
scaffold_8	retained_intron	3615643	3615886	+	asmbl_52785	none	STRG.9863.1,blat.proc3825168.chain_2410	2	STRG.9863.2,blat.proc3825168.chain_2408	2
scaffold_15	spliced_intron	15449482	15449702	+	asmbl_15793,asmbl_15794,asmbl_15795	none	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,blat.proc3825172.chain_3619,blat.proc3825172.chain_3624	5	Trinity_GG_27706_c0_g1_i3,Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3621,blat.proc3825172.chain_3626	4
scaffold_15	skipped_exon	6956898	6957133	-	asmbl_14271,asmbl_14273	none	STRG.18300.1,blat.proc3825156.chain_3145,blat.proc3825156.chain_3146	3	STRG.18300.2,blat.proc3825156.chain_3147	2
scaffold_1	starts_in_intron	5723638	5723638	-	asmbl_289	none	blat.proc3825148.chain_368	1	STRG.386.1,STRG.386.2,blat.proc3825148.chain_369,blat.proc3825148.chain_370,blat.proc3825148.chain_371	5
scaffold_7	retained_intron	8842324	8844151	+	asmbl_50062	none	STRG.9134.1,blat.proc3825168.chain_1558	2	STRG.9134.2,blat.proc3825168.chain_1557	2
scaffold_16	starts_in_intron	9893910	9893910	-	asmbl_17298	none	blat.proc3825158.chain_656	1	STRG.19579.1,blat.proc3825158.chain_655	2
scaffold_14	spliced_intron	9506808	9506827	-	asmbl_13385	none	STRG.17349.1,blat.proc3825156.chain_2180	2	Trinity_GG_9735_c1_g1_i1	1
scaffold_1	alternate_exon	20989301	20989617	+	asmbl_2670	none	STRG.1435.3,Trinity_GG_18143_c0_g1_i2,blat.proc3825164.chain_1567	3	STRG.1435.2,Trinity_GG_18143_c0_g1_i3,blat.proc3825164.chain_1565	3
scaffold_22	alt_acceptor	4837652	4837653	+	asmbl_30044	none	STRG.24900.2	1	STRG.24900.1,Trinity_GG_31075_c0_g1_i1,blat.proc3825176.chain_2011	3
scaffold_10	alt_acceptor	11598329	11598330	+	asmbl_3475,asmbl_3477	none	STRG.12815.2,STRG.12815.3	2	STRG.12815.1	1
scaffold_12	retained_exon	3329169	3329232	+	asmbl_7546,asmbl_7547,asmbl_7549,asmbl_7551	none	STRG.14555.1,STRG.14555.2,STRG.14555.3,STRG.14555.4,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i2,Trinity_GG_25356_c0_g1_i3,blat.proc3825170.chain_3110,blat.proc3825170.chain_3112	9	STRG.14555.5	1
scaffold_2	alternate_exon	180968	180984	+	asmbl_24086	none	blat.proc3825164.chain_1665	1	STRG.1512.1	1
scaffold_1	ends_in_intron	16480954	16480954	-	asmbl_998	none	blat.proc3825148.chain_1101	1	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1098,blat.proc3825148.chain_1102,blat.proc3825148.chain_1104	6
scaffold_17	starts_in_intron	1512400	1512400	-	asmbl_17722	none	blat.proc3825158.chain_1059	1	STRG.19991.1,STRG.19991.2,blat.proc3825158.chain_1056,blat.proc3825158.chain_1057	4
scaffold_7	retained_intron	12451061	12451154	-	asmbl_51228	none	Trinity_GG_5252_c0_g1_i7,blat.proc3825152.chain_1692	2	Trinity_GG_5252_c0_g1_i10,blat.proc3825152.chain_1688	2
scaffold_10	retained_intron	12895006	12895119	-	asmbl_4838	none	blat.proc3825154.chain_1473	1	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1475	3
scaffold_8	alternate_exon	4692903	4693088	+	asmbl_52849	none	STRG.9929.2,blat.proc3825168.chain_2505	2	STRG.9929.1	1
scaffold_5	retained_intron	15560627	15561046	-	asmbl_44703,asmbl_44705	none	STRG.6751.1,blat.proc3825150.chain_2953,blat.proc3825150.chain_2954	3	blat.proc3825150.chain_2952	1
scaffold_19	ends_in_intron	10069606	10069606	+	asmbl_21616	none	STRG.22393.3	1	STRG.22393.1,blat.proc3825174.chain_3292,blat.proc3825174.chain_3293,blat.proc3825174.chain_3296	4
scaffold_15	alternate_exon	9640740	9641846	-	asmbl_14392	none	Trinity_GG_10347_c2_g1_i7,blat.proc3825156.chain_3253	2	Trinity_GG_10347_c4_g1_i1,blat.proc3825156.chain_3249,blat.proc3825156.chain_3261	3
scaffold_17	retained_intron	5138001	5138143	-	asmbl_17923,asmbl_17924	none	STRG.20247.4,blat.proc3825158.chain_1308	2	STRG.20247.1,blat.proc3825158.chain_1310	2
scaffold_21	ends_in_intron	3124240	3124240	-	asmbl_27516	none	Trinity_GG_13335_c0_g1_i1,blat.proc3825160.chain_1060	2	STRG.23943.1,STRG.23943.2,STRG.23943.3,STRG.23943.4,blat.proc3825160.chain_1056,blat.proc3825160.chain_1057,blat.proc3825160.chain_1058,blat.proc3825160.chain_1059	8
scaffold_26	spliced_intron	9772970	9773112	+	asmbl_35257,asmbl_35258,asmbl_35260,asmbl_35264	none	STRG.28516.4,STRG.28516.6,blat.proc3825178.chain_1640,blat.proc3825178.chain_1642	4	STRG.28516.1,STRG.28516.2,STRG.28516.3,STRG.28516.5,STRG.28516.7,Trinity_GG_33086_c0_g1_i6,blat.proc3825178.chain_1636,blat.proc3825178.chain_1637,blat.proc3825178.chain_1638,blat.proc3825178.chain_1639,blat.proc3825178.chain_1641	11
scaffold_20	alt_acceptor	6983094	6983095	-	asmbl_25860	none	STRG.23261.3	1	STRG.23261.1	1
scaffold_13	skipped_exon	5804903	5806487	+	asmbl_10903	none	blat.proc3825172.chain_711	1	STRG.15896.1,STRG.15896.2	2
scaffold_22	skipped_exon	7802137	7803136	-	asmbl_29427	none	blat.proc3825160.chain_2301	1	STRG.25134.1,blat.proc3825160.chain_2302	2
scaffold_10	alternate_exon	10779347	10779420	+	asmbl_3433,asmbl_3434	none	STRG.12765.1,STRG.12765.2	2	STRG.12765.3	1
scaffold_23	retained_intron	7915714	7915792	-	asmbl_31061	none	Trinity_GG_14594_c1_g1_i2,blat.proc3825160.chain_3254	2	STRG.26100.1,STRG.26100.2,blat.proc3825160.chain_3253,blat.proc3825160.chain_3255	4
scaffold_4	spliced_intron	15728040	15728147	-	asmbl_43120,asmbl_43122	none	STRG.5162.1,blat.proc3825150.chain_1293,blat.proc3825150.chain_1294	3	blat.proc3825150.chain_1292	1
scaffold_10	retained_intron	10283622	10283975	-	asmbl_4712	none	STRG.12719.3,Trinity_GG_7121_c0_g1_i1,blat.proc3825154.chain_1346	3	blat.proc3825154.chain_1348	1
scaffold_5	ends_in_intron	18561302	18561302	+	asmbl_46270,asmbl_46271,asmbl_46272	none	Trinity_GG_21132_c0_g1_i13,Trinity_GG_21132_c0_g1_i4,Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3153,blat.proc3825166.chain_3156	5	STRG.6987.1,STRG.6987.3,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i7,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	8
scaffold_7	starts_in_intron	8611864	8611864	+	asmbl_50028	none	Trinity_GG_22327_c0_g1_i3,blat.proc3825168.chain_1562	2	STRG.9090.1,blat.proc3825168.chain_1561	2
scaffold_9	alt_acceptor	15356150	15356151	+	asmbl_54553	none	STRG.11736.1	1	STRG.11736.3	1
scaffold_1	starts_in_intron	20351441	20351441	+	asmbl_2622	none	STRG.1396.8	1	STRG.1396.1,STRG.1396.6,blat.proc3825164.chain_1584,blat.proc3825164.chain_1585,blat.proc3825164.chain_1587,blat.proc3825164.chain_1588	6
scaffold_26	starts_in_intron	5983324	5983324	+	asmbl_35066	none	STRG.28312.2	1	blat.proc3825178.chain_1429,blat.proc3825178.chain_1431	2
scaffold_3	alternate_exon	16780567	16780648	+	asmbl_40633	none	STRG.3931.2	1	STRG.3931.1,blat.proc3825166.chain_411	2
scaffold_5	skipped_exon	12928980	12930381	-	asmbl_44496	none	STRG.6520.1,Trinity_GG_3661_c0_g1_i1,blat.proc3825150.chain_2706	3	STRG.6520.2	1
scaffold_22	starts_in_intron	4372464	4372464	+	asmbl_30002	none	blat.proc3825176.chain_1955	1	STRG.24859.1,blat.proc3825176.chain_1956	2
scaffold_6	retained_intron	8922099	8922181	-	asmbl_48603	none	STRG.7768.1,Trinity_GG_4392_c0_g1_i2,blat.proc3825152.chain_153	3	blat.proc3825152.chain_152	1
scaffold_13	starts_in_intron	5841198	5841198	-	asmbl_9733	none	blat.proc3825156.chain_770	1	STRG.15894.1,blat.proc3825156.chain_769,blat.proc3825156.chain_771,blat.proc3825156.chain_773	4
scaffold_13	retained_intron	2274959	2277261	-	asmbl_9437,asmbl_9438,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.3,STRG.15548.4,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395	6	STRG.15548.2,blat.proc3825156.chain_399	2
scaffold_26	ends_in_intron	4470090	4470090	+	asmbl_34915	none	blat.proc3825178.chain_1248	1	STRG.28157.1,blat.proc3825178.chain_1247,blat.proc3825178.chain_1249	3
scaffold_27	retained_exon	3972444	3972536	+	asmbl_36241	none	STRG.28863.1,Trinity_GG_33279_c0_g2_i1,blat.proc3825178.chain_2020,blat.proc3825178.chain_2021	4	STRG.28863.2	1
scaffold_4	retained_exon	18931853	18931954	-	asmbl_43392	none	STRG.5475.1,blat.proc3825150.chain_1624	2	STRG.5475.2,blat.proc3825150.chain_1623	2
scaffold_21	spliced_intron	524687	524895	+	asmbl_28272	none	STRG.23745.1,Trinity_GG_30471_c0_g1_i1,blat.proc3825176.chain_961	3	Trinity_GG_30471_c0_g1_i2,blat.proc3825176.chain_962	2
scaffold_15	spliced_intron	6080293	6080419	-	asmbl_14239	none	STRG.18271.1,blat.proc3825156.chain_3121	2	blat.proc3825156.chain_3120	1
scaffold_21	starts_in_intron	10119095	10119095	+	asmbl_28862	none	Trinity_GG_30844_c1_g1_i2,blat.proc3825176.chain_1625	2	STRG.24477.1,blat.proc3825176.chain_1624	2
scaffold_10	ends_in_intron	10284632	10284632	-	asmbl_4715	none	Trinity_GG_7121_c0_g1_i7,blat.proc3825154.chain_1342	2	STRG.12719.2,blat.proc3825154.chain_1345	2
scaffold_13	starts_in_intron	5842514	5842514	-	asmbl_9737	none	blat.proc3825156.chain_769	1	STRG.15894.1,blat.proc3825156.chain_773	2
scaffold_8	alternate_exon	6113174	6119514	+	asmbl_52939	none	STRG.10015.2,Trinity_GG_22863_c0_g1_i1,blat.proc3825168.chain_2540	3	STRG.10015.3	1
scaffold_15	starts_in_intron	15916352	15916352	+	asmbl_15841,asmbl_15847	none	STRG.18976.2,STRG.18976.3	2	STRG.18976.1	1
scaffold_22	alternate_exon	10678069	10682197	-	asmbl_29616	none	STRG.25415.1,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608,blat.proc3825160.chain_2611	4	STRG.25415.3	1
scaffold_21	retained_intron	10309452	10309508	-	asmbl_28033	none	STRG.24499.1,Trinity_GG_13695_c0_g1_i1	2	STRG.24499.3	1
scaffold_7	alt_acceptor	11659530	11659531	+	asmbl_50182	none	STRG.9284.1,blat.proc3825168.chain_1737	2	STRG.9284.2	1
scaffold_8	spliced_intron	12693755	12693924	+	asmbl_53325,asmbl_53326,asmbl_53327,asmbl_53328,asmbl_53329,asmbl_53330,asmbl_53332	none	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3009,blat.proc3825168.chain_3010	7	blat.proc3825168.chain_3011	1
scaffold_17	ends_in_intron	6823314	6823314	-	asmbl_17992	none	Trinity_GG_11448_c0_g1_i1,blat.proc3825158.chain_1386	2	STRG.20345.3,blat.proc3825158.chain_1387	2
scaffold_15	starts_in_intron	6005	6005	-	asmbl_13904	none	blat.proc3825156.chain_2673	1	STRG.17862.1,blat.proc3825156.chain_2672	2
scaffold_20	ends_in_intron	5922950	5922950	-	asmbl_25793	none	blat.proc3825160.chain_279	1	STRG.23199.2,STRG.23199.3,STRG.23199.4,blat.proc3825160.chain_276,blat.proc3825160.chain_278,blat.proc3825160.chain_280,blat.proc3825160.chain_281	7
scaffold_5	retained_intron	5608890	5608962	+	asmbl_45354	none	blat.proc3825166.chain_2204	1	STRG.5985.2,blat.proc3825166.chain_2202	2
scaffold_2	retained_intron	15271745	15272034	+	asmbl_25014	none	blat.proc3825164.chain_2620	1	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621,blat.proc3825164.chain_2622	9
scaffold_13	retained_intron	5701364	5701646	-	asmbl_9707	none	STRG.15881.2,blat.proc3825156.chain_728,blat.proc3825156.chain_729	3	STRG.15881.1,blat.proc3825156.chain_726,blat.proc3825156.chain_733	3
scaffold_16	skipped_exon	2215678	2216158	+	asmbl_16124	none	STRG.19123.2	1	STRG.19123.1,Trinity_GG_27776_c0_g1_i2,blat.proc3825172.chain_3744	3
scaffold_10	spliced_intron	1425275	1425575	+	asmbl_2931,asmbl_2932,asmbl_2933,asmbl_2934,asmbl_2937,asmbl_2938,asmbl_2939	none	STRG.12016.1,STRG.12016.2,STRG.12016.3,STRG.12016.4,Trinity_GG_23995_c0_g1_i3,Trinity_GG_23995_c0_g1_i4,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_759,blat.proc3825170.chain_761,blat.proc3825170.chain_763,blat.proc3825170.chain_764,blat.proc3825170.chain_765	12	STRG.12016.5,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_760,blat.proc3825170.chain_762	4
scaffold_5	retained_exon	17976420	17976597	+	asmbl_46198	none	STRG.6942.1,blat.proc3825166.chain_3048	2	blat.proc3825166.chain_3049	1
scaffold_18	ends_in_intron	7270735	7270735	+	asmbl_20734	none	Trinity_GG_29138_c0_g1_i2,blat.proc3825174.chain_2435	2	STRG.21436.1,Trinity_GG_29138_c0_g1_i1,blat.proc3825174.chain_2434	3
scaffold_20	starts_in_intron	6761064	6761064	+	asmbl_26679	none	Trinity_GG_30145_c1_g1_i1,blat.proc3825176.chain_429	2	STRG.23253.1,blat.proc3825176.chain_430,blat.proc3825176.chain_431	3
scaffold_9	starts_in_intron	1236394	1236394	+	asmbl_53807	none	blat.proc3825168.chain_3288	1	STRG.10830.1,blat.proc3825168.chain_3289	2
scaffold_2	starts_in_intron	5445830	5445830	+	asmbl_24421	none	Trinity_GG_18402_c0_g1_i5,blat.proc3825164.chain_2076	2	STRG.1953.1,STRG.1953.2,STRG.1953.3,blat.proc3825164.chain_2074,blat.proc3825164.chain_2075	5
scaffold_20	retained_intron	8394496	8394623	-	asmbl_25993	none	STRG.23390.1,blat.proc3825160.chain_502	2	STRG.23390.2,blat.proc3825160.chain_501	2
scaffold_8	retained_intron	4234132	4234567	+	asmbl_52825	none	blat.proc3825168.chain_2492,blat.proc3825168.chain_2494	2	STRG.9905.1,blat.proc3825168.chain_2491,blat.proc3825168.chain_2493	3
scaffold_3	retained_intron	7739054	7739724	+	asmbl_40179	none	STRG.3365.1,Trinity_GG_19228_c0_g1_i1,Trinity_GG_19228_c0_g1_i2,blat.proc3825164.chain_3642,blat.proc3825164.chain_3643,blat.proc3825164.chain_3644	6	STRG.3365.2	1
scaffold_1	starts_in_intron	20498991	20498991	-	asmbl_1183	none	blat.proc3825148.chain_1351	1	blat.proc3825148.chain_1350	1
scaffold_28	retained_intron	4255504	4255598	-	asmbl_38202	none	blat.proc3825162.chain_2795	1	STRG.29622.1,blat.proc3825162.chain_2794,blat.proc3825162.chain_2796	3
scaffold_19	alt_acceptor	13162237	13162238	+	asmbl_21858,asmbl_21859,asmbl_21860	none	STRG.22640.1,STRG.22640.2,blat.proc3825174.chain_3672	3	blat.proc3825174.chain_3673	1
scaffold_9	retained_intron	14818996	14819592	-	asmbl_55500,asmbl_55501	none	STRG.11702.8,blat.proc3825154.chain_162	2	STRG.11702.1,blat.proc3825154.chain_160,blat.proc3825154.chain_161	3
scaffold_5	skipped_exon	13806575	13808028	-	asmbl_44564,asmbl_44566	none	STRG.6602.3,blat.proc3825150.chain_2813	2	STRG.6602.1,blat.proc3825150.chain_2814,blat.proc3825150.chain_2815	3
scaffold_26	retained_exon	4332659	4333373	-	asmbl_35542	none	STRG.28149.4	1	STRG.28149.2,STRG.28149.5	2
scaffold_7	alt_acceptor	5916762	5916763	-	asmbl_50899	none	STRG.8897.2,blat.proc3825152.chain_1284	2	STRG.8897.3,blat.proc3825152.chain_1285	2
scaffold_1	retained_intron	20988978	20989300	+	asmbl_2669	none	STRG.1435.1,Trinity_GG_18143_c0_g1_i1,blat.proc3825164.chain_1564	3	STRG.1435.3,Trinity_GG_18143_c0_g1_i2,blat.proc3825164.chain_1567	3
scaffold_2	spliced_intron	14021377	14021829	+	asmbl_24868,asmbl_24870	none	STRG.2398.1,Trinity_GG_18647_c0_g1_i1,blat.proc3825164.chain_2574,blat.proc3825164.chain_2577	4	Trinity_GG_18647_c0_g1_i3,blat.proc3825164.chain_2575,blat.proc3825164.chain_2576	3
scaffold_20	retained_intron	7910387	7910642	-	asmbl_25944	none	STRG.23344.1,Trinity_GG_13039_c0_g1_i2,blat.proc3825160.chain_470	3	STRG.23344.2,blat.proc3825160.chain_469	2
scaffold_19	retained_intron	12492311	12492484	+	asmbl_21815	none	blat.proc3825174.chain_3623	1	STRG.22590.1,STRG.22590.2,STRG.22590.3,STRG.22590.4,STRG.22590.5,blat.proc3825174.chain_3624,blat.proc3825174.chain_3625,blat.proc3825174.chain_3626,blat.proc3825174.chain_3628	9
scaffold_22	ends_in_intron	4238763	4238763	-	asmbl_29215	none	Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065	2	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2066,blat.proc3825160.chain_2067,blat.proc3825160.chain_2068	6
scaffold_13	starts_in_intron	15466198	15466198	+	asmbl_11509	none	Trinity_GG_26457_c1_g1_i1	1	STRG.16588.1	1
scaffold_10	ends_in_intron	6038677	6038677	+	asmbl_3219	none	blat.proc3825170.chain_1105	1	STRG.12429.1,Trinity_GG_24198_c0_g1_i1,blat.proc3825170.chain_1104	3
scaffold_1	retained_intron	9163722	9163832	-	asmbl_518	none	blat.proc3825148.chain_614	1	STRG.612.1,blat.proc3825148.chain_612,blat.proc3825148.chain_613	3
scaffold_2	alt_donor	17973063	17973064	+	asmbl_25208,asmbl_25209,asmbl_25210,asmbl_25211	none	STRG.2689.1,blat.proc3825164.chain_2961,blat.proc3825164.chain_2962,blat.proc3825164.chain_2963,blat.proc3825164.chain_2964	5	STRG.2689.2	1
scaffold_11	alt_acceptor	1016877	1016878	-	asmbl_6403	none	STRG.13302.1,blat.proc3825154.chain_1856	2	STRG.13302.2	1
scaffold_26	alt_acceptor	3623044	3623045	+	asmbl_34802	none	STRG.28042.3	1	STRG.28042.2,blat.proc3825178.chain_1087	2
scaffold_2	alternate_exon	7214806	7215264	+	asmbl_24542,asmbl_24548	none	STRG.2054.3,Trinity_GG_18495_c0_g1_i5,Trinity_GG_18495_c0_g1_i8,blat.proc3825164.chain_2272,blat.proc3825164.chain_2273	5	STRG.2054.4,Trinity_GG_18495_c0_g1_i3,blat.proc3825164.chain_2271	3
scaffold_12	retained_intron	2721443	2721926	+	asmbl_7518	none	Trinity_GG_25344_c0_g2_i1,blat.proc3825170.chain_3080	2	Trinity_GG_25344_c0_g1_i5	1
scaffold_24	spliced_intron	5940367	5940483	+	asmbl_32265	none	blat.proc3825176.chain_3666	1	Trinity_GG_32084_c0_g1_i2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3665,blat.proc3825176.chain_3670,blat.proc3825176.chain_3672,blat.proc3825176.chain_3680	6
scaffold_7	spliced_intron	5916256	5916585	-	asmbl_50899,asmbl_50900,asmbl_50903	none	STRG.8897.2,STRG.8897.3,blat.proc3825152.chain_1284,blat.proc3825152.chain_1285,blat.proc3825152.chain_1286	5	blat.proc3825152.chain_1288	1
scaffold_2	spliced_intron	13397950	13398180	+	asmbl_24843,asmbl_24846	none	STRG.2359.2,blat.proc3825164.chain_2560,blat.proc3825164.chain_2563	3	STRG.2359.1,Trinity_GG_18642_c0_g1_i2,blat.proc3825164.chain_2562,blat.proc3825164.chain_2564	4
scaffold_6	alt_donor	16448387	16448388	-	asmbl_49135	none	STRG.8373.1,blat.proc3825152.chain_808	2	STRG.8373.2,blat.proc3825152.chain_807	2
scaffold_11	retained_intron	5258825	5258854	+	asmbl_5556	none	STRG.13614.3,Trinity_GG_24827_c1_g1_i1	2	STRG.13614.2	1
scaffold_6	skipped_exon	13228472	13229383	+	asmbl_47499,asmbl_47507	none	STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_577	3	STRG.8084.1,STRG.8084.4,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_573,blat.proc3825168.chain_575,blat.proc3825168.chain_576	7
scaffold_2	alt_donor	2790920	2790921	-	asmbl_22916,asmbl_22920	none	STRG.1715.1,blat.proc3825148.chain_1603,blat.proc3825148.chain_1604	3	STRG.1715.2,blat.proc3825148.chain_1605	2
scaffold_11	spliced_intron	8040872	8040989	-	asmbl_6818	none	STRG.13808.1,blat.proc3825154.chain_2382	2	blat.proc3825154.chain_2383	1
scaffold_23	alt_acceptor	2635382	2635383	+	asmbl_31414	none	STRG.25731.4	1	STRG.25731.1,STRG.25731.2,STRG.25731.3,STRG.25731.5,Trinity_GG_31521_c0_g1_i6,blat.proc3825176.chain_2693	6
scaffold_1210	alternate_exon	1838	1895	-	asmbl_9263	none	STRG.30565.2	1	STRG.30565.1	1
scaffold_20	retained_intron	8340131	8340449	-	asmbl_25984	none	blat.proc3825160.chain_510	1	STRG.23378.1,STRG.23378.2,STRG.23378.3,Trinity_GG_13065_c0_g1_i10,blat.proc3825160.chain_506,blat.proc3825160.chain_507,blat.proc3825160.chain_508,blat.proc3825160.chain_509,blat.proc3825160.chain_511,blat.proc3825160.chain_512	10
scaffold_26	spliced_intron	5894602	5894720	-	asmbl_35638,asmbl_35639,asmbl_35644	none	STRG.28301.1,STRG.28301.2,blat.proc3825162.chain_1468,blat.proc3825162.chain_1472,blat.proc3825162.chain_1473	5	Trinity_GG_15800_c0_g1_i8,blat.proc3825162.chain_1471	2
scaffold_6	alternate_exon	18266655	18266887	-	asmbl_49238	none	STRG.8505.1	1	STRG.8505.2	1
scaffold_19	spliced_intron	5648006	5648276	-	asmbl_22184	none	STRG.22131.1,blat.proc3825158.chain_2912	2	STRG.22131.2	1
scaffold_15	alternate_exon	15174210	15179043	+	asmbl_15725,asmbl_15727,asmbl_15728	none	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3520,blat.proc3825172.chain_3522,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	7	blat.proc3825172.chain_3526,blat.proc3825172.chain_3527	2
scaffold_4	starts_in_intron	13821022	13821022	+	asmbl_41828	none	Trinity_GG_20113_c0_g1_i2,blat.proc3825166.chain_1446	2	STRG.5008.1,Trinity_GG_20113_c0_g1_i1,blat.proc3825166.chain_1445,blat.proc3825166.chain_1447	4
scaffold_13	spliced_intron	6949079	6950695	-	asmbl_9821,asmbl_9822	none	STRG.15984.2,STRG.15984.4	2	STRG.15984.1,STRG.15984.6,Trinity_GG_8951_c0_g1_i5	3
scaffold_6	alternate_exon	886163	886307	-	asmbl_48087,asmbl_48089	none	STRG.7159.2,STRG.7159.3	2	STRG.7159.1	1
scaffold_9	alternate_exon	2029157	2029247	-	asmbl_54861	none	STRG.10878.1,blat.proc3825152.chain_3142	2	STRG.10878.2	1
scaffold_5	starts_in_intron	15140000	15140000	-	asmbl_44653	none	blat.proc3825150.chain_2902	1	STRG.6707.1,blat.proc3825150.chain_2903	2
scaffold_26	retained_intron	5044652	5044757	+	asmbl_34947,asmbl_34948,asmbl_34954	none	blat.proc3825178.chain_1169,blat.proc3825178.chain_1170,blat.proc3825178.chain_1180	3	STRG.28240.1,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179	9
scaffold_18	alt_acceptor	2394215	2394216	-	asmbl_19725	none	STRG.21118.1	1	Trinity_GG_11836_c0_g1_i4,blat.proc3825158.chain_2096	2
scaffold_2	alt_acceptor	2291937	2291938	-	asmbl_22882	none	STRG.1669.1	1	STRG.1669.2	1
scaffold_13	alternate_exon	7504556	7506361	-	asmbl_9884,asmbl_9894	none	STRG.16047.2,blat.proc3825156.chain_901,blat.proc3825156.chain_908	3	blat.proc3825156.chain_904	1
scaffold_13	starts_in_intron	11540919	11540919	+	asmbl_11272	none	Trinity_GG_26235_c0_g1_i6,blat.proc3825172.chain_1026	2	STRG.16304.1,Trinity_GG_26235_c0_g1_i7,blat.proc3825172.chain_1022,blat.proc3825172.chain_1025,blat.proc3825172.chain_1027	5
scaffold_9	ends_in_intron	15497074	15497074	-	asmbl_55536	none	blat.proc3825154.chain_214	1	STRG.11747.1,STRG.11747.3,STRG.11747.4,blat.proc3825154.chain_215,blat.proc3825154.chain_216,blat.proc3825154.chain_218	6
scaffold_11	retained_intron	8040872	8040989	-	asmbl_6819	none	blat.proc3825154.chain_2383	1	STRG.13808.1,blat.proc3825154.chain_2382	2
scaffold_2	retained_exon	11256406	11256473	+	asmbl_24745,asmbl_24748	none	STRG.2257.2,STRG.2257.3,blat.proc3825164.chain_2416	3	STRG.2257.1,blat.proc3825164.chain_2417,blat.proc3825164.chain_2418	3
scaffold_11	alternate_exon	6711055	6713217	-	asmbl_6740	none	blat.proc3825154.chain_2286	1	STRG.13716.6,Trinity_GG_7683_c0_g1_i2,blat.proc3825154.chain_2288	3
scaffold_19	retained_intron	9521510	9521794	+	asmbl_21605	none	STRG.22385.1,blat.proc3825158.chain_3174	2	STRG.22385.2	1
scaffold_11	alt_donor	12045375	12045376	+	asmbl_6006,asmbl_6008	none	STRG.14127.2,STRG.14127.3,Trinity_GG_25095_c0_g1_i2,blat.proc3825170.chain_2658	4	STRG.14127.1,blat.proc3825170.chain_2659	2
scaffold_14	skipped_exon	3159934	3160251	+	asmbl_11921	none	blat.proc3825172.chain_1609	1	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	14
scaffold_18	alt_donor	7199469	7199470	+	asmbl_20716	none	STRG.21425.1,Trinity_GG_29093_c0_g1_i2,blat.proc3825174.chain_2364	3	STRG.21425.3	1
scaffold_12	ends_in_intron	7604319	7604319	+	asmbl_7772	none	blat.proc3825170.chain_3375	1	STRG.14838.1,blat.proc3825170.chain_3376	2
scaffold_25	ends_in_intron	5810354	5810354	-	asmbl_34285	none	blat.proc3825162.chain_841	1	STRG.27473.1,blat.proc3825162.chain_839,blat.proc3825162.chain_840	3
scaffold_7	retained_intron	13210711	13210856	+	asmbl_50322	none	STRG.9429.1,blat.proc3825168.chain_1947	2	STRG.9429.2,STRG.9429.3,STRG.9429.4,blat.proc3825168.chain_1943,blat.proc3825168.chain_1944,blat.proc3825168.chain_1946	6
scaffold_25	ends_in_intron	1857797	1857797	-	asmbl_34046	none	Trinity_GG_15257_c2_g1_i1	1	STRG.27193.1,blat.proc3825162.chain_605	2
scaffold_13	spliced_intron	3430642	3430833	+	asmbl_10691	none	Trinity_GG_25887_c0_g1_i3,blat.proc3825172.chain_352	2	STRG.15654.1,STRG.15654.2,Trinity_GG_25887_c0_g1_i1,Trinity_GG_25887_c0_g1_i4,Trinity_GG_25887_c0_g1_i5,blat.proc3825172.chain_351,blat.proc3825172.chain_353,blat.proc3825172.chain_354	8
scaffold_18	starts_in_intron	9789207	9789207	+	asmbl_20891	none	STRG.21586.3,blat.proc3825174.chain_2555	2	STRG.21586.1	1
scaffold_1	alternate_exon	4874449	4874710	-	asmbl_221	none	STRG.300.2	1	STRG.300.1	1
scaffold_2	spliced_intron	15265851	15265947	+	asmbl_24996,asmbl_24999,asmbl_25000,asmbl_25001,asmbl_25003,asmbl_25006	none	STRG.2485.1,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2607	7	STRG.2485.2,blat.proc3825164.chain_2602,blat.proc3825164.chain_2606,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	5
scaffold_23	skipped_exon	1850325	1851476	+	asmbl_31362	none	STRG.25669.1	1	STRG.25669.2,blat.proc3825176.chain_2626	2
scaffold_23	alt_donor	1860659	1860660	+	asmbl_31363	none	STRG.25670.1,Trinity_GG_31477_c0_g1_i2,blat.proc3825176.chain_2619	3	Trinity_GG_31477_c0_g1_i1,blat.proc3825176.chain_2620	2
scaffold_19	alt_acceptor	3561074	3561075	+	asmbl_21328,asmbl_21329	none	STRG.22045.3,STRG.22045.4	2	STRG.22045.1	1
scaffold_21	starts_in_intron	1042648	1042648	+	asmbl_28320	none	STRG.23786.2	1	STRG.23786.1,blat.proc3825176.chain_990	2
scaffold_17	retained_intron	9004638	9006457	+	asmbl_19057	none	blat.proc3825174.chain_1323	1	STRG.20525.3,blat.proc3825174.chain_1322	2
scaffold_2	retained_exon	30939	31692	+	asmbl_24060,asmbl_24062,asmbl_24063,asmbl_24064,asmbl_24065	none	STRG.1496.1,STRG.1496.3,Trinity_GG_18174_c0_g1_i1,Trinity_GG_18174_c0_g1_i4,blat.proc3825164.chain_1639,blat.proc3825164.chain_1641,blat.proc3825164.chain_1644,blat.proc3825164.chain_1645	8	Trinity_GG_18174_c0_g1_i10,blat.proc3825164.chain_1643	2
scaffold_25	alt_acceptor	9047045	9047046	-	asmbl_34478	none	STRG.27715.1	1	STRG.27715.2,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106	3
scaffold_5	spliced_intron	108210	108423	-	asmbl_43755	none	STRG.5574.2	1	STRG.5574.1,Trinity_GG_3150_c0_g1_i2	2
scaffold_1	alternate_exon	3526030	3526122	-	asmbl_160	none	STRG.220.2	1	STRG.220.4,blat.proc3825148.chain_195,blat.proc3825148.chain_196	3
scaffold_28	alternate_exon	2317129	2317162	+	asmbl_37362	none	STRG.29407.2	1	STRG.29407.1,blat.proc3825178.chain_2596,blat.proc3825178.chain_2597	3
scaffold_15	alt_acceptor	11401715	11401716	-	asmbl_14495,asmbl_14496	none	STRG.18606.2,STRG.18606.3,blat.proc3825156.chain_3366	3	STRG.18606.1,STRG.18606.5,blat.proc3825156.chain_3363,blat.proc3825156.chain_3365	4
scaffold_10	alt_acceptor	6911500	6911501	+	asmbl_3253	none	STRG.12516.1	1	STRG.12516.2,blat.proc3825170.chain_1079	2
scaffold_3	retained_exon	8999962	9000055	-	asmbl_39046,asmbl_39050	none	blat.proc3825148.chain_3317,blat.proc3825148.chain_3319,blat.proc3825148.chain_3320	3	STRG.3431.1,STRG.3431.2	2
scaffold_21	starts_in_intron	7387002	7387002	+	asmbl_28733	none	blat.proc3825176.chain_1414	1	STRG.24265.1,STRG.24265.2,blat.proc3825176.chain_1412	3
scaffold_17	alternate_exon	14349636	14349855	-	asmbl_18424	none	STRG.20914.2,blat.proc3825158.chain_1893	2	STRG.20914.1,blat.proc3825158.chain_1891	2
scaffold_14	retained_intron	4780275	4781266	-	asmbl_13072,asmbl_13074	none	STRG.17010.3,blat.proc3825156.chain_1841	2	STRG.17010.1,STRG.17010.2,blat.proc3825156.chain_1840	3
scaffold_25	retained_intron	5158232	5158408	-	asmbl_34247	none	blat.proc3825162.chain_805	1	STRG.27443.3	1
scaffold_24	alt_donor	6728216	6728217	-	asmbl_32965,asmbl_32966,asmbl_32970,asmbl_32971	none	STRG.26723.1,STRG.26723.2,blat.proc3825162.chain_100,blat.proc3825162.chain_95,blat.proc3825162.chain_96,blat.proc3825162.chain_99	6	blat.proc3825162.chain_98	1
scaffold_16	starts_in_intron	6100648	6100648	-	asmbl_17138	none	blat.proc3825158.chain_500	1	STRG.19342.1,blat.proc3825158.chain_498,blat.proc3825158.chain_499,blat.proc3825158.chain_502	4
scaffold_12	alt_acceptor	3693562	3693563	+	asmbl_7568	none	STRG.14576.1,Trinity_GG_25367_c0_g1_i2,blat.proc3825170.chain_3147	3	STRG.14576.2	1
scaffold_4	spliced_intron	19539841	19539875	-	asmbl_43450	none	blat.proc3825150.chain_1720	1	STRG.5541.2,Trinity_GG_3107_c0_g1_i2,blat.proc3825150.chain_1719	3
scaffold_26	alt_donor	2789067	2789068	+	asmbl_34757	none	Trinity_GG_32740_c0_g1_i3,blat.proc3825178.chain_1022	2	STRG.27972.1,Trinity_GG_32740_c0_g1_i1,blat.proc3825178.chain_1021	3
scaffold_10	skipped_exon	378745	379004	-	asmbl_3948	none	STRG.11922.4,blat.proc3825154.chain_462	2	STRG.11922.1,blat.proc3825154.chain_461	2
scaffold_1	alternate_exon	20451305	20451590	+	asmbl_2632	none	STRG.1393.2	1	STRG.1393.1,Trinity_GG_18126_c0_g1_i3,blat.proc3825164.chain_1539	3
scaffold_15	retained_exon	15345897	15346020	+	asmbl_15753	none	STRG.18919.2	1	STRG.18919.1	1
scaffold_4	alternate_exon	17129759	17130977	-	asmbl_43260	none	STRG.5313.1,Trinity_GG_2969_c0_g1_i2	2	Trinity_GG_2969_c0_g1_i1,blat.proc3825150.chain_1490	2
scaffold_5	alt_donor	4948779	4948780	+	asmbl_45317	none	STRG.5954.1,Trinity_GG_20574_c0_g1_i1,blat.proc3825166.chain_2183	3	STRG.5954.4	1
scaffold_4	spliced_intron	6300650	6300748	+	asmbl_41389,asmbl_41390	none	STRG.4503.1,STRG.4503.2,Trinity_GG_19783_c0_g1_i1,Trinity_GG_19783_c0_g1_i3,blat.proc3825166.chain_920,blat.proc3825166.chain_922	6	blat.proc3825166.chain_919,blat.proc3825166.chain_921	2
scaffold_10	spliced_intron	8898870	8899178	-	asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4626,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632,asmbl_4633	none	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	12	blat.proc3825154.chain_1268,blat.proc3825178.chain_3389	2
scaffold_7	ends_in_intron	1219414	1219414	+	asmbl_49582	none	Trinity_GG_22054_c0_g1_i1,blat.proc3825168.chain_1120	2	STRG.8629.1,STRG.8629.2,Trinity_GG_22054_c0_g1_i2,Trinity_GG_22054_c0_g1_i4	4
scaffold_26	alternate_exon	1322047	1322126	-	asmbl_35401	none	STRG.27913.3	1	STRG.27913.1,STRG.27913.2	2
scaffold_14	spliced_intron	7215812	7216426	+	asmbl_12134,asmbl_12135,asmbl_12137	none	STRG.17156.1,Trinity_GG_26721_c0_g1_i3,blat.proc3825172.chain_1868,blat.proc3825172.chain_1870,blat.proc3825172.chain_1871	5	blat.proc3825172.chain_1869	1
scaffold_1	spliced_intron	5205899	5206482	+	asmbl_1706,asmbl_1707,asmbl_1708,asmbl_1710,asmbl_1712	none	STRG.329.1,STRG.329.3,blat.proc3825164.chain_469,blat.proc3825164.chain_473,blat.proc3825164.chain_475	5	STRG.329.2,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_476	4
scaffold_21	alt_donor	10122351	10122352	+	asmbl_28860	none	STRG.24477.2,blat.proc3825176.chain_1626	2	STRG.24477.3	1
scaffold_8	starts_in_intron	6322054	6322054	-	asmbl_51878	none	blat.proc3825152.chain_2323	1	STRG.10039.1	1
scaffold_13	spliced_intron	2653343	2653584	-	asmbl_9467,asmbl_9470,asmbl_9471	none	STRG.15580.1,blat.proc3825156.chain_376,blat.proc3825156.chain_377,blat.proc3825156.chain_378	4	blat.proc3825156.chain_379	1
scaffold_13	alt_acceptor	9535180	9535181	-	asmbl_10030,asmbl_10031,asmbl_10032,asmbl_10033	none	STRG.16216.1,STRG.16216.2,STRG.16216.4,STRG.16216.5,blat.proc3825156.chain_1123,blat.proc3825156.chain_1124	6	STRG.16216.3	1
scaffold_3	alt_acceptor	6041928	6041929	-	asmbl_38880,asmbl_38883	none	STRG.3259.3,STRG.3259.4	2	STRG.3259.1,STRG.3259.6,STRG.3259.7	3
scaffold_22	alternate_exon	10678069	10682061	-	asmbl_29615	none	STRG.25415.2,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608,blat.proc3825160.chain_2611	4	STRG.25415.3	1
scaffold_9	alt_acceptor	4674816	4674817	+	asmbl_53953	none	STRG.11041.1,Trinity_GG_23410_c0_g1_i1,blat.proc3825168.chain_3490	3	STRG.11041.2,Trinity_GG_23410_c0_g1_i2,blat.proc3825168.chain_3489	3
scaffold_6	starts_in_intron	3805810	3805810	+	asmbl_46864	none	Trinity_GG_21370_c0_g1_i10,blat.proc3825166.chain_3604	2	STRG.7383.1,STRG.7383.2,STRG.7383.3,STRG.7383.4,STRG.7383.5	5
scaffold_28	spliced_intron	4255778	4255887	-	asmbl_38201,asmbl_38202	none	STRG.29622.1,blat.proc3825162.chain_2794,blat.proc3825162.chain_2795	3	blat.proc3825162.chain_2796	1
scaffold_8	retained_intron	4299829	4300052	+	asmbl_52830	none	blat.proc3825168.chain_2502	1	STRG.9911.1,blat.proc3825168.chain_2501	2
scaffold_6	alternate_exon	3386885	3388507	-	asmbl_48256,asmbl_48258	none	STRG.7350.1,blat.proc3825150.chain_3478,blat.proc3825150.chain_3479	3	STRG.7350.2,blat.proc3825150.chain_3481	2
scaffold_17	retained_intron	6803623	6804157	-	asmbl_17987	none	STRG.20334.1	1	STRG.20334.2,STRG.20334.3	2
scaffold_2	alternate_exon	20313282	20313401	+	asmbl_25323	none	STRG.2877.3,blat.proc3825164.chain_3116	2	STRG.2877.1,Trinity_GG_18936_c0_g1_i2,blat.proc3825164.chain_3115	3
scaffold_10	alternate_exon	926313	926545	-	asmbl_4011	none	Trinity_GG_6668_c0_g1_i3,blat.proc3825154.chain_539	2	STRG.11968.2	1
scaffold_23	alt_acceptor	7231452	7231453	+	asmbl_31683	none	STRG.26051.1	1	STRG.26051.2,STRG.26051.3	2
scaffold_3	retained_exon	10628153	10628825	+	asmbl_40283,asmbl_40289	none	STRG.3513.4,STRG.3513.6,blat.proc3825164.chain_3689	3	STRG.3513.3,blat.proc3825164.chain_3682	2
scaffold_7	starts_in_intron	18768577	18768577	-	asmbl_51502	none	blat.proc3825152.chain_1979	1	blat.proc3825152.chain_1977,blat.proc3825152.chain_1978	2
scaffold_11	alt_acceptor	5922918	5922919	+	asmbl_5595	none	STRG.13663.2	1	STRG.13663.1,blat.proc3825170.chain_2196,blat.proc3825170.chain_2197	3
scaffold_24	alt_acceptor	9071989	9071990	+	asmbl_32490,asmbl_32491,asmbl_32496,asmbl_32497	none	STRG.26950.1,STRG.26950.2,Trinity_GG_32214_c0_g1_i3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_148,blat.proc3825178.chain_149,blat.proc3825178.chain_150	8	Trinity_GG_32214_c0_g1_i1,blat.proc3825178.chain_152	2
scaffold_13	alt_donor	2500530	2500531	+	asmbl_10616	none	STRG.15558.2,Trinity_GG_25825_c0_g1_i1,blat.proc3825172.chain_240	3	STRG.15558.1,Trinity_GG_25825_c0_g1_i2,blat.proc3825172.chain_241	3
scaffold_7	alternate_exon	18394634	18394963	-	asmbl_51467,asmbl_51469,asmbl_51470,asmbl_51471,asmbl_51472,asmbl_51473,asmbl_51479	none	STRG.9670.2,STRG.9670.3,STRG.9670.4,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2013,blat.proc3825152.chain_2018,blat.proc3825152.chain_2021	10	Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2014,blat.proc3825152.chain_2017	4
scaffold_17	retained_intron	14546213	14546347	+	asmbl_19413	none	STRG.20928.1,Trinity_GG_28807_c0_g1_i2,Trinity_GG_28807_c0_g1_i3	3	STRG.20928.2	1
scaffold_12	alternate_exon	7618666	7618786	-	asmbl_8607,asmbl_8608	none	STRG.14840.5,STRG.14840.6	2	STRG.14840.1,STRG.14840.2,STRG.14840.3,STRG.14840.4,blat.proc3825154.chain_3358	5
scaffold_19	alternate_exon	4863379	4866797	+	asmbl_21345	none	STRG.22065.1	1	STRG.22065.2	1
scaffold_2	retained_intron	8148213	8148438	-	asmbl_23316	none	Trinity_GG_1167_c0_g1_i2,blat.proc3825148.chain_2124	2	STRG.2099.2	1
scaffold_87	ends_in_intron	9080	9080	+	asmbl_53729	none	blat.proc3825148.chain_2740,blat.proc3825178.chain_3245	2	STRG.30146.3,STRG.30146.4,STRG.30146.5	3
scaffold_22	alt_acceptor	6957798	6957799	-	asmbl_29351,asmbl_29352,asmbl_29353	none	STRG.25024.1,STRG.25024.3,STRG.25024.5,blat.proc3825160.chain_2160	4	STRG.25024.2,blat.proc3825160.chain_2159	2
scaffold_14	skipped_exon	6435038	6437524	-	asmbl_13132	none	STRG.17092.1,blat.proc3825156.chain_1908	2	STRG.17092.2,blat.proc3825156.chain_1909	2
scaffold_26	retained_intron	4109409	4109599	+	asmbl_34861	none	STRG.28106.3	1	STRG.28106.1,STRG.28106.2,blat.proc3825178.chain_1160	3
scaffold_9	starts_in_intron	9537506	9537506	-	asmbl_55194	none	blat.proc3825152.chain_3553	1	blat.proc3825152.chain_3552	1
scaffold_20	alternate_exon	10102386	10105076	+	asmbl_26925	none	STRG.23555.3,Trinity_GG_30308_c0_g1_i1,blat.proc3825176.chain_680,blat.proc3825176.chain_716,blat.proc3825176.chain_721	5	STRG.23555.2,blat.proc3825176.chain_717	2
scaffold_2	starts_in_intron	10880091	10880091	+	asmbl_24739,asmbl_24740	none	Trinity_GG_18581_c0_g1_i3,Trinity_GG_18581_c0_g1_i4,blat.proc3825164.chain_2439,blat.proc3825164.chain_2441	4	STRG.2245.1,STRG.2245.2,Trinity_GG_18581_c0_g1_i6,blat.proc3825164.chain_2436,blat.proc3825164.chain_2437,blat.proc3825164.chain_2438	6
scaffold_18	retained_intron	8912486	8912797	-	asmbl_20042,asmbl_20044,asmbl_20046,asmbl_20047,asmbl_20050	none	STRG.21558.3,STRG.21558.6,STRG.21558.7,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451	7	blat.proc3825158.chain_2453	1
scaffold_19	ends_in_intron	13006524	13006524	+	asmbl_21842,asmbl_21844	none	Trinity_GG_29821_c0_g1_i12,Trinity_GG_29821_c0_g1_i13,blat.proc3825174.chain_3647,blat.proc3825174.chain_3651	4	STRG.22623.1,STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i10,Trinity_GG_29821_c0_g1_i11,Trinity_GG_29821_c0_g1_i5,Trinity_GG_29821_c0_g1_i6,blat.proc3825174.chain_3643,blat.proc3825174.chain_3645,blat.proc3825174.chain_3646,blat.proc3825174.chain_3649,blat.proc3825174.chain_3650	12
scaffold_28	starts_in_intron	2341427	2341427	-	asmbl_38046	none	Trinity_GG_16495_c0_g1_i4,blat.proc3825162.chain_2606	2	Trinity_GG_16495_c0_g1_i3,blat.proc3825162.chain_2607,blat.proc3825162.chain_2609	3
scaffold_5	alt_donor	6933179	6933180	+	asmbl_45463	none	STRG.6107.1,blat.proc3825166.chain_2320	2	blat.proc3825166.chain_2322	1
scaffold_19	alternate_exon	691757	691811	-	asmbl_21996	none	STRG.21849.3,blat.proc3825158.chain_2692	2	STRG.21849.2,Trinity_GG_12186_c1_g1_i1,blat.proc3825158.chain_2693	3
scaffold_15	retained_intron	12390490	12391005	-	asmbl_14570	none	Trinity_GG_10480_c0_g1_i11,blat.proc3825156.chain_3513	2	STRG.18695.1,STRG.18695.3,blat.proc3825156.chain_3520	3
scaffold_6	alternate_exon	11559600	11560512	-	asmbl_48760	none	STRG.7952.1,blat.proc3825152.chain_350	2	STRG.7952.3,blat.proc3825152.chain_351	2
scaffold_17	ends_in_intron	14125588	14125588	-	asmbl_18410	none	Trinity_GG_11722_c1_g1_i1,blat.proc3825158.chain_1863	2	STRG.20888.1	1
scaffold_14	retained_intron	2919342	2919421	-	asmbl_12992	none	blat.proc3825156.chain_1737	1	STRG.16895.1,blat.proc3825156.chain_1738	2
scaffold_19	starts_in_intron	6212187	6212187	+	asmbl_21401	none	Trinity_GG_29515_c1_g1_i1,blat.proc3825174.chain_3108	2	STRG.22153.1,STRG.22153.2,STRG.22153.3,blat.proc3825174.chain_3104,blat.proc3825174.chain_3105,blat.proc3825174.chain_3106,blat.proc3825174.chain_3107	7
scaffold_1	spliced_intron	5962592	5962698	-	asmbl_305	none	STRG.399.1,blat.proc3825148.chain_363	2	Trinity_GG_210_c0_g1_i1,blat.proc3825148.chain_362	2
scaffold_9	spliced_intron	16562642	16563669	-	asmbl_55581,asmbl_55582,asmbl_55584,asmbl_55590,asmbl_55591	none	STRG.11806.2,STRG.11806.3,STRG.11806.4,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7	STRG.11806.6	1
scaffold_21	spliced_intron	1053818	1053982	-	asmbl_27376,asmbl_27379	none	STRG.23787.1,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	3	STRG.23787.3,STRG.23787.4,Trinity_GG_13262_c0_g1_i1,Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_925,blat.proc3825160.chain_926	6
scaffold_9	alt_donor	5138136	5138137	-	asmbl_54991	none	STRG.11093.2,blat.proc3825152.chain_3271	2	STRG.11093.1,blat.proc3825152.chain_3270	2
scaffold_26	alt_acceptor	9083581	9083582	-	asmbl_35764	none	STRG.28473.2,blat.proc3825162.chain_1681	2	STRG.28473.3	1
scaffold_6	alternate_exon	5182107	5182682	-	asmbl_48402	none	STRG.7488.2	1	STRG.7488.1	1
scaffold_7	ends_in_intron	4900329	4900329	+	asmbl_49757	none	Trinity_GG_22187_c1_g1_i4	1	STRG.8839.2,blat.proc3825168.chain_1326	2
scaffold_6	skipped_exon	9150989	9151553	-	asmbl_48608,asmbl_48610	none	STRG.7792.1,STRG.7792.2,blat.proc3825152.chain_167	3	STRG.7792.3,blat.proc3825152.chain_168	2
scaffold_7	alternate_exon	16149037	16149349	+	asmbl_50466,asmbl_50467	none	STRG.9579.1,STRG.9579.2,Trinity_GG_22634_c0_g1_i1,Trinity_GG_22634_c0_g1_i2,blat.proc3825168.chain_2117,blat.proc3825168.chain_2118	6	STRG.9579.3	1
scaffold_8	alt_donor	11298983	11298984	+	asmbl_53214,asmbl_53217	none	STRG.10343.1,Trinity_GG_23079_c0_g1_i2,Trinity_GG_23079_c0_g1_i3,blat.proc3825168.chain_2924,blat.proc3825168.chain_2926	5	STRG.10343.2,STRG.10343.3,Trinity_GG_23079_c0_g1_i4,blat.proc3825168.chain_2925	4
scaffold_6	alternate_exon	3535361	3535568	-	asmbl_48268	none	blat.proc3825150.chain_3488	1	blat.proc3825150.chain_3489	1
scaffold_27	alternate_exon	2876009	2876082	+	asmbl_36139	none	STRG.28770.3,blat.proc3825178.chain_1950	2	STRG.28770.1,blat.proc3825178.chain_1947	2
scaffold_3	alternate_exon	10937137	10937191	-	asmbl_39124	none	STRG.3545.3	1	STRG.3545.1,STRG.3545.2,STRG.3545.4,blat.proc3825148.chain_3370,blat.proc3825148.chain_3371	5
scaffold_12	alternate_exon	16315446	16315493	-	asmbl_9119,asmbl_9120,asmbl_9121	none	blat.proc3825156.chain_239,blat.proc3825156.chain_240,blat.proc3825156.chain_241	3	STRG.15386.1,STRG.15386.2	2
scaffold_7	alt_acceptor	142035	142036	-	asmbl_50673	none	STRG.8592.1,blat.proc3825152.chain_1035	2	STRG.8592.2	1
scaffold_1	alt_acceptor	10504959	10504960	+	asmbl_2009	none	STRG.685.1,blat.proc3825164.chain_803	2	STRG.685.2	1
scaffold_2	ends_in_intron	7878109	7878109	+	asmbl_24582,asmbl_24584,asmbl_24585	none	STRG.2082.1,Trinity_GG_18501_c0_g1_i14,Trinity_GG_18501_c0_g1_i18,blat.proc3825164.chain_2287,blat.proc3825164.chain_2288,blat.proc3825164.chain_2294	6	Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2289,blat.proc3825164.chain_2290,blat.proc3825164.chain_2292	6
scaffold_13	skipped_exon	5389961	5391342	+	asmbl_10845	none	STRG.15835.1,blat.proc3825172.chain_571	2	STRG.15835.2	1
scaffold_2	alternate_exon	18647960	18651194	-	asmbl_23811	none	STRG.2741.1,blat.proc3825148.chain_2694	2	STRG.2741.2	1
scaffold_6	alt_acceptor	14079493	14079494	+	asmbl_47570	none	STRG.8166.1,blat.proc3825168.chain_620	2	STRG.8166.2,blat.proc3825168.chain_621	2
scaffold_15	retained_exon	7183429	7183551	-	asmbl_14277	none	STRG.18310.4,blat.proc3825156.chain_3041	2	STRG.18310.3,blat.proc3825156.chain_3042	2
scaffold_3	spliced_intron	10607348	10607574	-	asmbl_39101,asmbl_39104	none	STRG.3501.2,blat.proc3825148.chain_3328,blat.proc3825148.chain_3330	3	STRG.3501.1,STRG.3501.3,blat.proc3825148.chain_3329	3
scaffold_5	alt_acceptor	11079124	11079125	+	asmbl_45726,asmbl_45727	none	STRG.6399.1,STRG.6399.3,blat.proc3825166.chain_2600,blat.proc3825166.chain_2601	4	STRG.6399.2,blat.proc3825166.chain_2599,blat.proc3825166.chain_2602	3
scaffold_10	alt_acceptor	378745	378746	-	asmbl_3948	none	STRG.11922.4,blat.proc3825154.chain_462	2	STRG.11922.3,Trinity_GG_6631_c0_g1_i7,blat.proc3825154.chain_458	3
scaffold_7	alt_acceptor	11413204	11413205	+	asmbl_50174	none	STRG.9288.2	1	blat.proc3825168.chain_1793	1
scaffold_19	alternate_exon	12971805	12972586	-	asmbl_22578	none	STRG.22618.2	1	Trinity_GG_12569_c0_g1_i1,blat.proc3825158.chain_3362	2
scaffold_13	starts_in_intron	2873190	2873190	-	asmbl_9489	none	blat.proc3825156.chain_472	1	STRG.15590.1,blat.proc3825156.chain_473,blat.proc3825156.chain_475	3
scaffold_7	retained_exon	12448129	12449110	-	asmbl_51226,asmbl_51231,asmbl_51232,asmbl_51233	none	STRG.9354.1,STRG.9354.2,Trinity_GG_5252_c0_g1_i10,Trinity_GG_5252_c0_g1_i20,blat.proc3825152.chain_1688	5	STRG.9354.3	1
scaffold_4	starts_in_intron	13723421	13723421	-	asmbl_43000	none	STRG.4994.1,blat.proc3825150.chain_1109	2	STRG.4994.2,blat.proc3825150.chain_1110	2
scaffold_3	spliced_intron	1765661	1765894	+	asmbl_39878,asmbl_39883	none	STRG.2994.1,STRG.2994.2	2	STRG.2994.3,Trinity_GG_19006_c0_g1_i1,blat.proc3825164.chain_3230	3
scaffold_2	alt_acceptor	5440686	5440687	+	asmbl_24419	none	STRG.1953.2,blat.proc3825164.chain_2074	2	STRG.1953.3	1
scaffold_21	retained_intron	6818231	6818419	+	asmbl_28701	none	STRG.24217.1,Trinity_GG_30700_c0_g1_i3,blat.proc3825176.chain_1372	3	STRG.24217.2,blat.proc3825176.chain_1368,blat.proc3825176.chain_1369,blat.proc3825176.chain_1370,blat.proc3825176.chain_1371	5
scaffold_13	starts_in_intron	8721134	8721134	+	asmbl_11145	none	STRG.16143.2,Trinity_GG_26153_c0_g1_i1,blat.proc3825172.chain_855	3	STRG.16143.1,Trinity_GG_26153_c0_g2_i1,blat.proc3825172.chain_856	3
scaffold_7	alt_acceptor	15551729	15551730	-	asmbl_51378	none	STRG.9557.2	1	STRG.9557.1	1
scaffold_8	starts_in_intron	6114443	6114443	+	asmbl_52944	none	Trinity_GG_22863_c0_g2_i1,blat.proc3825168.chain_2543	2	STRG.10015.1,STRG.10015.2,Trinity_GG_22863_c0_g1_i1,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2540,blat.proc3825168.chain_2541	6
scaffold_3	spliced_intron	4304531	4304555	-	asmbl_38800	none	STRG.3131.2	1	STRG.3131.1	1
scaffold_18	retained_intron	4605161	4605249	-	asmbl_19811	none	blat.proc3825158.chain_2201	1	STRG.21247.1,blat.proc3825158.chain_2202	2
scaffold_15	spliced_intron	1504460	1505131	-	asmbl_13958	none	STRG.17963.1,blat.proc3825156.chain_2766	2	Trinity_GG_10091_c0_g1_i1,Trinity_GG_10091_c0_g1_i4,blat.proc3825156.chain_2767,blat.proc3825156.chain_2768	4
scaffold_13	skipped_exon	2274573	2277261	-	asmbl_9439	none	STRG.15548.1,blat.proc3825156.chain_398	2	STRG.15548.2,blat.proc3825156.chain_399	2
scaffold_17	alternate_exon	5064680	5064851	-	asmbl_17908	none	STRG.20229.2	1	STRG.20229.1,Trinity_GG_11371_c0_g1_i1,blat.proc3825158.chain_1271	3
scaffold_1	spliced_intron	2796391	2796537	+	asmbl_1559	none	STRG.182.1,blat.proc3825164.chain_283	2	STRG.182.2,blat.proc3825164.chain_284	2
scaffold_26	ends_in_intron	9314398	9314398	+	asmbl_35220	none	Trinity_GG_33078_c0_g2_i1,blat.proc3825178.chain_1619	2	STRG.28487.3,blat.proc3825178.chain_1611	2
scaffold_15	retained_exon	5743113	5743192	-	asmbl_14232,asmbl_14233	none	STRG.18261.1,STRG.18261.2	2	STRG.18261.3,STRG.18261.4	2
scaffold_15	retained_exon	6883099	6884143	-	asmbl_14265,asmbl_14270	none	STRG.18301.2,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	3	STRG.18301.1,STRG.18301.3,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153	7
scaffold_28	ends_in_intron	4754985	4754985	+	asmbl_37546	none	Trinity_GG_33744_c0_g1_i1,blat.proc3825178.chain_2822	2	STRG.29643.1,blat.proc3825178.chain_2821	2
scaffold_18	alt_acceptor	7875115	7875116	+	asmbl_20812,asmbl_20815	none	STRG.21491.4,STRG.21491.5,blat.proc3825174.chain_2470	3	STRG.21491.1,STRG.21491.2,STRG.21491.3,blat.proc3825174.chain_2468,blat.proc3825174.chain_2469,blat.proc3825174.chain_2471,blat.proc3825174.chain_2472	7
scaffold_13	retained_exon	5335012	5335101	+	asmbl_10837,asmbl_10840	none	STRG.15832.1,blat.proc3825172.chain_579,blat.proc3825172.chain_580	3	STRG.15832.2,blat.proc3825172.chain_578	2
scaffold_9	retained_exon	644291	644687	+	asmbl_53782	none	STRG.10793.3	1	STRG.10793.2	1
scaffold_23	ends_in_intron	5338587	5338587	-	asmbl_30907,asmbl_30912,asmbl_30913	none	STRG.25911.3,Trinity_GG_14511_c0_g1_i7,blat.proc3825160.chain_3097,blat.proc3825160.chain_3098	4	STRG.25911.1,STRG.25911.2,blat.proc3825160.chain_3099,blat.proc3825160.chain_3100,blat.proc3825160.chain_3101,blat.proc3825160.chain_3102	6
scaffold_8	alt_donor	2856635	2856636	-	asmbl_51720	none	STRG.9814.2,blat.proc3825152.chain_2091	2	STRG.9814.1,blat.proc3825152.chain_2090	2
scaffold_22	spliced_intron	11473745	11473840	+	asmbl_30389	none	STRG.25490.1,Trinity_GG_31348_c0_g1_i2,blat.proc3825176.chain_2427	3	blat.proc3825176.chain_2426	1
scaffold_6	starts_in_intron	8305133	8305133	+	asmbl_47121	none	Trinity_GG_21537_c0_g1_i2,blat.proc3825168.chain_137	2	STRG.7711.1,blat.proc3825168.chain_138	2
scaffold_10	retained_intron	11909255	11909403	+	asmbl_3502,asmbl_3503	none	Trinity_GG_24345_c0_g1_i3,Trinity_GG_24345_c0_g1_i4,blat.proc3825170.chain_1353,blat.proc3825170.chain_1354	4	STRG.12828.1,STRG.12828.2,Trinity_GG_24345_c0_g1_i2,blat.proc3825170.chain_1352,blat.proc3825170.chain_1355	5
scaffold_1	alt_donor	4577552	4577553	-	asmbl_200,asmbl_206,asmbl_210,asmbl_211	none	STRG.285.1,blat.proc3825148.chain_154,blat.proc3825148.chain_155,blat.proc3825148.chain_159,blat.proc3825148.chain_160	5	STRG.285.6	1
scaffold_9	alt_donor	3413826	3413827	-	asmbl_54902,asmbl_54904,asmbl_54905	none	STRG.10955.1,STRG.10955.3,blat.proc3825152.chain_3205	3	blat.proc3825152.chain_3203	1
scaffold_27	starts_in_intron	1958580	1958580	+	asmbl_36050	none	Trinity_GG_33165_c2_g1_i1,blat.proc3825178.chain_1777	2	STRG.28677.1,STRG.28677.2,blat.proc3825178.chain_1771,blat.proc3825178.chain_1772,blat.proc3825178.chain_1773,blat.proc3825178.chain_1775	6
scaffold_2	retained_intron	7469822	7470021	-	asmbl_23264,asmbl_23265	none	blat.proc3825148.chain_2058,blat.proc3825148.chain_2063	2	STRG.2074.3,blat.proc3825148.chain_2064	2
scaffold_25	retained_intron	5625977	5626514	-	asmbl_34271,asmbl_34272	none	STRG.27464.2,Trinity_GG_15402_c0_g1_i1,blat.proc3825162.chain_830,blat.proc3825162.chain_831	4	STRG.27464.1,blat.proc3825162.chain_828	2
scaffold_12	spliced_intron	1065757	1065908	-	asmbl_8288,asmbl_8290	none	STRG.14451.1,blat.proc3825154.chain_2966,blat.proc3825154.chain_2968	3	STRG.14451.2	1
scaffold_17	alternate_exon	7130057	7130203	-	asmbl_18052	none	STRG.20385.2	1	STRG.20385.1,Trinity_GG_11468_c0_g1_i1,blat.proc3825158.chain_1434	3
scaffold_8	spliced_intron	9904299	9904378	-	asmbl_52063,asmbl_52064	none	STRG.10243.1,STRG.10243.2,blat.proc3825152.chain_2525,blat.proc3825152.chain_2526	4	Trinity_GG_5719_c0_g1_i2,blat.proc3825152.chain_2527	2
scaffold_15	retained_intron	9819517	9819607	+	asmbl_15415,asmbl_15418	none	STRG.18497.2,STRG.18497.3,Trinity_GG_27412_c0_g1_i2,blat.proc3825172.chain_3082,blat.proc3825172.chain_3084	5	STRG.18497.1,blat.proc3825172.chain_3080,blat.proc3825172.chain_3081	3
scaffold_16	starts_in_intron	5509859	5509859	-	asmbl_17121	none	blat.proc3825158.chain_363	1	STRG.19312.3,blat.proc3825158.chain_365	2
scaffold_17	alt_donor	13960067	13960068	+	asmbl_19368,asmbl_19369,asmbl_19371	none	STRG.20882.1,STRG.20882.2,blat.proc3825174.chain_1771,blat.proc3825174.chain_1773,blat.proc3825174.chain_1775	5	blat.proc3825174.chain_1774	1
scaffold_16	alt_acceptor	10486657	10486658	+	asmbl_16543	none	STRG.19619.1	1	STRG.19619.2	1
scaffold_5	spliced_intron	14125028	14125150	-	asmbl_44589	none	STRG.6623.1	1	blat.proc3825166.chain_2774	1
scaffold_8	alt_donor	12410537	12410538	+	asmbl_53312	none	STRG.10430.3	1	STRG.10430.1,STRG.10430.2,Trinity_GG_23094_c0_g1_i1,blat.proc3825168.chain_2954	4
scaffold_10	skipped_exon	976035	976826	-	asmbl_4023	none	Trinity_GG_6637_c0_g1_i6	1	STRG.11979.1,STRG.11979.2,Trinity_GG_6637_c0_g1_i3,Trinity_GG_6637_c0_g1_i5,Trinity_GG_6637_c0_g1_i9	5
scaffold_8	spliced_intron	12693374	12693431	+	asmbl_53327,asmbl_53328,asmbl_53329	none	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3009	3	blat.proc3825168.chain_3010	1
scaffold_6	alt_donor	2759859	2759860	+	asmbl_46774	none	STRG.7273.2	1	STRG.7273.1,blat.proc3825166.chain_3481	2
scaffold_3	alternate_exon	18106420	18106583	-	asmbl_39590	none	STRG.4023.2	1	STRG.4023.1,blat.proc3825150.chain_171	2
scaffold_3	alt_donor	12943266	12943267	-	asmbl_39241,asmbl_39242	none	STRG.3672.2,Trinity_GG_2010_c0_g1_i2,blat.proc3825148.chain_3545	3	STRG.3672.1,STRG.3672.3,Trinity_GG_2010_c0_g1_i1,blat.proc3825148.chain_3544	4
scaffold_21	alt_acceptor	1053818	1053819	-	asmbl_27376,asmbl_27379	none	STRG.23787.1,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	3	STRG.23787.2,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922	3
scaffold_13	alt_donor	4375770	4375771	+	asmbl_10785,asmbl_10788	none	STRG.15764.1,STRG.15764.2	2	STRG.15764.3,STRG.15764.4	2
scaffold_11	spliced_intron	8099759	8099979	+	asmbl_5721,asmbl_5722,asmbl_5723,asmbl_5724,asmbl_5727	none	STRG.13822.1,STRG.13822.2,STRG.13822.3,STRG.13822.4,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	12	Trinity_GG_24917_c0_g1_i2,Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342,blat.proc3825170.chain_2345	4
scaffold_13	retained_intron	7991437	7991929	-	asmbl_9927,asmbl_9928	none	STRG.16080.2,STRG.16080.3,blat.proc3825156.chain_970,blat.proc3825156.chain_971,blat.proc3825156.chain_975	5	STRG.16080.1,blat.proc3825156.chain_968,blat.proc3825156.chain_972,blat.proc3825156.chain_973	4
scaffold_2	ends_in_intron	10654858	10654858	+	asmbl_24711	none	blat.proc3825164.chain_2398	1	STRG.2225.1,blat.proc3825164.chain_2400	2
scaffold_18	ends_in_intron	7876098	7876098	+	asmbl_20811,asmbl_20814,asmbl_20815	none	STRG.21491.3,STRG.21491.5,blat.proc3825174.chain_2468,blat.proc3825174.chain_2471	4	STRG.21491.1,STRG.21491.2,STRG.21491.4,blat.proc3825174.chain_2469,blat.proc3825174.chain_2470,blat.proc3825174.chain_2472	6
scaffold_4	alternate_exon	16872468	16872910	-	asmbl_43229,asmbl_43230	none	STRG.5273.3,STRG.5273.4	2	STRG.5273.1,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	3
scaffold_14	ends_in_intron	408985	408985	-	asmbl_12831	none	STRG.16736.1	1	Trinity_GG_9366_c0_g1_i2,blat.proc3825156.chain_1555	2
scaffold_3	spliced_intron	6871188	6871289	+	asmbl_40145	none	STRG.3311.2	1	STRG.3311.1,blat.proc3825164.chain_3513	2
scaffold_17	alt_donor	1290514	1290515	-	asmbl_17686	none	STRG.19964.3	1	STRG.19964.2	1
scaffold_4	skipped_exon	16802675	16804433	-	asmbl_43216	none	Trinity_GG_2936_c0_g1_i1,blat.proc3825150.chain_1429	2	STRG.5268.1,STRG.5268.2,blat.proc3825150.chain_1428	3
scaffold_23	alternate_exon	5620237	5621741	-	asmbl_30925	none	Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057	2	STRG.25937.1	1
scaffold_26	spliced_intron	6351209	6351295	-	asmbl_35680,asmbl_35683,asmbl_35685	none	STRG.28335.1,STRG.28335.2,STRG.28335.3,blat.proc3825162.chain_1570	4	STRG.28335.4,STRG.28335.6	2
scaffold_4	ends_in_intron	19607748	19607748	-	asmbl_43468	none	Trinity_GG_3126_c0_g2_i1,blat.proc3825150.chain_1765	2	STRG.5550.1,STRG.5550.2,STRG.5550.3,STRG.5550.4	4
scaffold_14	retained_exon	10425045	10425086	-	asmbl_13423	none	STRG.17393.1,Trinity_GG_9766_c0_g1_i2,blat.proc3825156.chain_2233	3	STRG.17393.2	1
scaffold_24	retained_intron	8749383	8749460	-	asmbl_33103,asmbl_33104,asmbl_33106,asmbl_33107	none	blat.proc3825162.chain_242,blat.proc3825162.chain_243,blat.proc3825162.chain_244,blat.proc3825162.chain_245	4	STRG.26892.1	1
scaffold_4	skipped_exon	247323	249396	+	asmbl_41093	none	STRG.4120.1	1	STRG.4120.2	1
scaffold_6	alt_acceptor	15112287	15112288	+	asmbl_47655,asmbl_47657	none	STRG.8277.1,STRG.8277.2,blat.proc3825168.chain_760	3	STRG.8277.3	1
scaffold_1097	retained_intron	2773	2913	+	asmbl_5248	none	STRG.30536.3	1	STRG.30536.1	1
scaffold_24	alt_acceptor	1338840	1338841	+	asmbl_32072	none	STRG.26392.1	1	STRG.26392.2	1
scaffold_18	alternate_exon	202828	204473	+	asmbl_20277	none	blat.proc3825174.chain_1917	1	Trinity_GG_28858_c0_g1_i1,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1919,blat.proc3825174.chain_1923	4
scaffold_11	starts_in_intron	17332673	17332673	+	asmbl_6210	none	blat.proc3825170.chain_2942	1	STRG.14395.1	1
scaffold_698	alt_acceptor	4088	4089	+	asmbl_49530	none	STRG.30433.1,blat.proc3825178.chain_3496	2	STRG.30433.2	1
scaffold_26	ends_in_intron	10122263	10122263	-	asmbl_35815	none	Trinity_GG_15946_c0_g1_i9,blat.proc3825162.chain_1713	2	STRG.28530.1,STRG.28530.2,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710,blat.proc3825162.chain_1712,blat.proc3825162.chain_1714,blat.proc3825162.chain_1715	10
scaffold_2	alt_donor	18307273	18307274	-	asmbl_23776	none	STRG.2714.3	1	STRG.2714.2,blat.proc3825148.chain_2641	2
scaffold_9	alternate_exon	15495475	15495851	-	asmbl_55532	none	STRG.11747.2,blat.proc3825154.chain_212	2	STRG.11747.3,blat.proc3825154.chain_218	2
scaffold_1	alt_donor	5733814	5733815	+	asmbl_1769,asmbl_1770	none	STRG.389.2,blat.proc3825164.chain_509	2	STRG.389.1,blat.proc3825164.chain_505,blat.proc3825164.chain_506,blat.proc3825164.chain_508	4
scaffold_27	ends_in_intron	2831797	2831797	+	asmbl_36128	none	blat.proc3825178.chain_1935	1	STRG.28768.3,blat.proc3825178.chain_1936	2
scaffold_4	retained_intron	5215330	5215445	-	asmbl_42567	none	STRG.4411.2,blat.proc3825150.chain_637	2	STRG.4411.1,blat.proc3825150.chain_636	2
scaffold_2	starts_in_intron	1397010	1397010	+	asmbl_24198	none	Trinity_GG_18250_c1_g2_i2,blat.proc3825164.chain_1810	2	STRG.1616.1,blat.proc3825164.chain_1809	2
scaffold_19	retained_intron	628249	628359	-	asmbl_21987,asmbl_21988,asmbl_21989	none	STRG.21845.1,STRG.21845.2,STRG.21845.3,Trinity_GG_12182_c0_g1_i1,blat.proc3825158.chain_2686	5	Trinity_GG_12182_c0_g1_i2,blat.proc3825158.chain_2687	2
scaffold_13	alt_acceptor	8300387	8300388	+	asmbl_11119	none	STRG.16123.2	1	STRG.16123.1,blat.proc3825172.chain_896,blat.proc3825172.chain_897,blat.proc3825172.chain_898	4
scaffold_20	starts_in_intron	8151988	8151988	-	asmbl_25967	none	STRG.23363.1,blat.proc3825160.chain_491	2	STRG.23363.2,STRG.23363.3,blat.proc3825160.chain_489,blat.proc3825160.chain_490	4
scaffold_1	starts_in_intron	7289862	7289862	+	asmbl_1895	none	Trinity_GG_17630_c0_g1_i1,blat.proc3825164.chain_641	2	STRG.520.1,STRG.520.2,STRG.520.3,Trinity_GG_17630_c0_g1_i5,blat.proc3825164.chain_639	5
scaffold_2	alt_acceptor	8566880	8566881	+	asmbl_24642	none	STRG.2126.2,Trinity_GG_18515_c0_g1_i2,blat.proc3825164.chain_2318	3	STRG.2126.1,Trinity_GG_18515_c0_g1_i1,blat.proc3825164.chain_2317	3
scaffold_8	alt_donor	4847418	4847419	-	asmbl_51808,asmbl_51810	none	STRG.9950.1,blat.proc3825152.chain_2223,blat.proc3825152.chain_2225,blat.proc3825152.chain_2226	4	STRG.9950.2,blat.proc3825152.chain_2224	2
scaffold_8	spliced_intron	16503452	16503680	-	asmbl_52405,asmbl_52419,asmbl_52420	none	STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	5	Trinity_GG_5934_c0_g1_i21,blat.proc3825152.chain_2928,blat.proc3825152.chain_2938	3
scaffold_24	spliced_intron	10782528	10782651	-	asmbl_33218,asmbl_33220,asmbl_33221	none	STRG.27043.1,blat.proc3825162.chain_368,blat.proc3825162.chain_369,blat.proc3825162.chain_370	4	blat.proc3825162.chain_367	1
scaffold_7	retained_intron	6042675	6043339	-	asmbl_50908	none	STRG.8910.1,Trinity_GG_5061_c0_g1_i13,Trinity_GG_5061_c0_g1_i3,Trinity_GG_5061_c0_g1_i4,Trinity_GG_5061_c0_g1_i9,blat.proc3825152.chain_1343,blat.proc3825152.chain_1346,blat.proc3825152.chain_1347,blat.proc3825152.chain_1348	9	STRG.8910.4,blat.proc3825152.chain_1342	2
scaffold_28	retained_exon	7491067	7491099	+	asmbl_37685	none	STRG.29829.1,blat.proc3825178.chain_3002	2	STRG.29829.2,blat.proc3825178.chain_3003	2
scaffold_11	alternate_exon	6252374	6258655	+	asmbl_5623	none	blat.proc3825170.chain_2242	1	STRG.13692.5	1
scaffold_19	alt_acceptor	11528972	11528973	-	asmbl_22418	none	STRG.22491.1,blat.proc3825158.chain_3208	2	STRG.22491.3	1
scaffold_15	alternate_exon	380858	381136	+	asmbl_14966	none	STRG.17892.1	1	STRG.17892.3,blat.proc3825172.chain_2610	2
scaffold_10	starts_in_intron	1629344	1629344	-	asmbl_4072	none	blat.proc3825154.chain_509	1	STRG.12027.1,blat.proc3825154.chain_507,blat.proc3825154.chain_510	3
scaffold_7	alternate_exon	11834502	11834592	-	asmbl_51168	none	STRG.9292.1,Trinity_GG_5234_c1_g1_i1,blat.proc3825152.chain_1638	3	STRG.9292.2	1
scaffold_17	retained_intron	3988304	3988434	-	asmbl_17837	none	STRG.20158.3,blat.proc3825158.chain_1211	2	STRG.20158.2,STRG.20158.4	2
scaffold_8	retained_intron	18084510	18084591	-	asmbl_52503	none	STRG.10710.2,Trinity_GG_5955_c0_g1_i3,blat.proc3825152.chain_2981	3	STRG.10710.1,STRG.10710.3,STRG.10710.4,STRG.10710.5,Trinity_GG_5955_c0_g1_i1,Trinity_GG_5955_c0_g1_i2,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2979,blat.proc3825152.chain_2980,blat.proc3825152.chain_2982	10
scaffold_1	ends_in_intron	20757415	20757415	+	asmbl_2654	none	blat.proc3825164.chain_1497	1	STRG.1422.1,blat.proc3825164.chain_1498	2
scaffold_9	alternate_exon	1704839	1704892	-	asmbl_54839	none	STRG.10868.2	1	STRG.10868.1,STRG.10868.4	2
scaffold_10	alt_acceptor	17701303	17701304	+	asmbl_3797	none	blat.proc3825154.chain_1793	1	blat.proc3825154.chain_1792	1
scaffold_13	spliced_intron	2270481	2270608	-	asmbl_9437,asmbl_9439,asmbl_9441,asmbl_9443,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_390,blat.proc3825156.chain_391,blat.proc3825156.chain_392,blat.proc3825156.chain_393,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	13	STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i3,blat.proc3825156.chain_394,blat.proc3825156.chain_400	5
scaffold_8	alt_donor	7453210	7453211	-	asmbl_51909	none	STRG.10072.2,blat.proc3825152.chain_2290	2	STRG.10072.1,Trinity_GG_5591_c0_g1_i1,blat.proc3825152.chain_2288,blat.proc3825152.chain_2289	4
scaffold_3	alt_donor	10631381	10631382	+	asmbl_40280,asmbl_40281	none	blat.proc3825164.chain_3686,blat.proc3825164.chain_3688,blat.proc3825164.chain_3691	3	STRG.3513.1,STRG.3513.2,STRG.3513.3,STRG.3513.4,STRG.3513.5,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3682,blat.proc3825164.chain_3684,blat.proc3825164.chain_3687,blat.proc3825164.chain_3689	11
scaffold_3	skipped_exon	6187507	6190087	-	asmbl_38910,asmbl_38916	none	STRG.3266.1,blat.proc3825148.chain_3119,blat.proc3825148.chain_3121	3	STRG.3266.2,blat.proc3825148.chain_3123,blat.proc3825148.chain_3124,blat.proc3825148.chain_3125	4
scaffold_18	spliced_intron	8912486	8913423	-	asmbl_20045	none	STRG.21558.4,blat.proc3825158.chain_2447	2	STRG.21558.3,STRG.21558.6,STRG.21558.7,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451	7
scaffold_1	retained_intron	18029822	18030007	-	asmbl_1075,asmbl_1076,asmbl_1078	none	STRG.1268.5,STRG.1268.7,blat.proc3825164.chain_1345	3	STRG.1268.4	1
scaffold_15	starts_in_intron	10766414	10766414	+	asmbl_15462,asmbl_15467	none	STRG.18562.4,blat.proc3825172.chain_3211,blat.proc3825172.chain_3214	3	blat.proc3825172.chain_3210,blat.proc3825172.chain_3212,blat.proc3825172.chain_3213,blat.proc3825172.chain_3216	4
scaffold_2	skipped_exon	2882290	2884803	-	asmbl_22930,asmbl_22931,asmbl_22933,asmbl_22935,asmbl_22936,asmbl_22937,asmbl_22938,asmbl_22940,asmbl_22941,asmbl_22943	none	STRG.1736.1,STRG.1736.2,STRG.1736.3,blat.proc3825148.chain_1666,blat.proc3825148.chain_1667,blat.proc3825148.chain_1669,blat.proc3825148.chain_1670,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672,blat.proc3825148.chain_1673,blat.proc3825148.chain_1674	11	blat.proc3825148.chain_1668	1
scaffold_2	spliced_intron	19127909	19127928	+	asmbl_25264	none	blat.proc3825164.chain_2969	1	STRG.2788.1	1
scaffold_12	alt_acceptor	12843020	12843021	+	asmbl_8030	none	STRG.15180.2,blat.proc3825170.chain_3624	2	STRG.15180.1,blat.proc3825170.chain_3625	2
scaffold_2	spliced_intron	6766206	6766429	+	asmbl_24490,asmbl_24491,asmbl_24494,asmbl_24495	none	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	9	Trinity_GG_18452_c0_g1_i6,blat.proc3825164.chain_2153	2
scaffold_4	retained_intron	16912391	16912492	+	asmbl_42011	none	STRG.5280.4	1	STRG.5280.1	1
scaffold_22	alt_acceptor	7671304	7671305	-	asmbl_29419	none	STRG.25113.2	1	STRG.25113.1,blat.proc3825160.chain_2201	2
scaffold_12	alt_acceptor	10050834	10050835	-	asmbl_8725	none	STRG.14983.1	1	STRG.14983.2,blat.proc3825154.chain_3495	2
scaffold_12	starts_in_intron	10515682	10515682	-	asmbl_8756	none	blat.proc3825154.chain_3544	1	STRG.15019.1,blat.proc3825154.chain_3543	2
scaffold_1	ends_in_intron	17688177	17688177	-	asmbl_1061	none	blat.proc3825148.chain_1246	1	STRG.1243.1,blat.proc3825148.chain_1245	2
scaffold_4	alternate_exon	14431522	14431561	+	asmbl_41871	none	STRG.5058.2	1	STRG.5058.1	1
scaffold_17	retained_exon	2357645	2357750	+	asmbl_18637,asmbl_18643	none	STRG.20030.1,blat.proc3825174.chain_907,blat.proc3825174.chain_909	3	STRG.20030.2	1
scaffold_4	starts_in_intron	10851595	10851595	+	asmbl_41671	none	Trinity_GG_20008_c0_g1_i3,blat.proc3825166.chain_1263	2	STRG.4805.1,blat.proc3825166.chain_1264,blat.proc3825166.chain_1265	3
scaffold_6	starts_in_intron	3350551	3350551	+	asmbl_46838	none	Trinity_GG_21302_c0_g1_i2	1	STRG.7347.1,STRG.7347.2	2
scaffold_14	retained_intron	8002248	8002475	+	asmbl_12182,asmbl_12183	none	STRG.17214.1,STRG.17214.2,Trinity_GG_26783_c0_g1_i1,Trinity_GG_26783_c0_g1_i3,blat.proc3825172.chain_1973,blat.proc3825172.chain_1974	6	Trinity_GG_26783_c0_g1_i4,blat.proc3825172.chain_1976	2
scaffold_26	ends_in_intron	8449196	8449196	+	asmbl_35178	none	blat.proc3825178.chain_1534	1	STRG.28439.1,blat.proc3825178.chain_1536,blat.proc3825178.chain_1537	3
scaffold_20	retained_intron	4510126	4510257	-	asmbl_25748	none	blat.proc3825160.chain_148	1	STRG.23132.1,blat.proc3825160.chain_150	2
scaffold_24	starts_in_intron	7165642	7165642	+	asmbl_32374	none	blat.proc3825176.chain_3743	1	STRG.26766.1,STRG.26766.2,blat.proc3825176.chain_3744	3
scaffold_7	retained_intron	5928121	5928803	+	asmbl_49829,asmbl_49830	none	STRG.8902.1,STRG.8902.4,Trinity_GG_22209_c0_g1_i3,blat.proc3825168.chain_1373	4	STRG.8902.3,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1375	3
scaffold_1	retained_intron	18033265	18033608	-	asmbl_1080	none	Trinity_GG_616_c0_g1_i1,blat.proc3825148.chain_1179	2	STRG.1269.2	1
scaffold_9	alt_acceptor	3675503	3675504	-	asmbl_54926	none	STRG.10993.5	1	STRG.10993.4	1
scaffold_12	spliced_intron	101136	101235	-	asmbl_8271	none	STRG.14421.1,blat.proc3825154.chain_2948	2	blat.proc3825154.chain_2947	1
scaffold_23	spliced_intron	3233100	3233254	-	asmbl_30787,asmbl_30789,asmbl_30790	none	STRG.25755.1,STRG.25755.2,STRG.25755.3,blat.proc3825160.chain_2917	4	Trinity_GG_14405_c0_g1_i1,blat.proc3825160.chain_2916	2
scaffold_7	skipped_exon	11412289	11413205	+	asmbl_50174	none	STRG.9288.2	1	STRG.9288.1,STRG.9288.3,Trinity_GG_22465_c0_g1_i2,Trinity_GG_22465_c0_g1_i4,blat.proc3825168.chain_1792,blat.proc3825168.chain_1794,blat.proc3825168.chain_1795	7
scaffold_24	retained_intron	3026292	3026335	+	asmbl_32131	none	STRG.26523.1	1	STRG.26523.2	1
scaffold_17	retained_intron	1353517	1353628	+	asmbl_18603	none	STRG.19973.2,Trinity_GG_28251_c0_g1_i2,blat.proc3825174.chain_857	3	STRG.19973.1,blat.proc3825174.chain_856	2
scaffold_1	retained_intron	1533624	1533762	+	asmbl_1486	none	Trinity_GG_17389_c0_g1_i1,blat.proc3825164.chain_205	2	STRG.95.1,Trinity_GG_17389_c0_g1_i2,blat.proc3825164.chain_206	3
scaffold_12	starts_in_intron	15112789	15112789	-	asmbl_9049	none	blat.proc3825156.chain_123	1	STRG.15313.1,blat.proc3825156.chain_122	2
scaffold_7	alt_donor	11300262	11300263	+	asmbl_50168	none	STRG.9272.1	1	STRG.9272.2,blat.proc3825168.chain_1771	2
scaffold_5	spliced_intron	16206282	16206377	+	asmbl_46062	none	STRG.6809.2	1	blat.proc3825166.chain_2952	1
scaffold_19	retained_intron	3516757	3516831	+	asmbl_21323	none	STRG.22039.1	1	blat.proc3825174.chain_3073	1
scaffold_1	ends_in_intron	8753563	8753563	-	asmbl_491,asmbl_492	none	STRG.579.4,Trinity_GG_326_c0_g1_i8,blat.proc3825148.chain_600,blat.proc3825148.chain_604	4	STRG.579.1,STRG.579.2,blat.proc3825148.chain_599,blat.proc3825148.chain_602	4
scaffold_15	ends_in_intron	5418229	5418229	+	asmbl_15202	none	Trinity_GG_27291_c0_g2_i1,blat.proc3825172.chain_2875	2	STRG.18226.1	1
scaffold_12	alt_acceptor	10605598	10605599	+	asmbl_7947	none	STRG.15036.4	1	STRG.15036.1,blat.proc3825170.chain_3579	2
scaffold_6	alt_donor	11011994	11011995	-	asmbl_48729	none	STRG.7916.2,blat.proc3825152.chain_319	2	STRG.7916.3,STRG.7916.4	2
scaffold_6	skipped_exon	9134833	9135545	+	asmbl_47213,asmbl_47217,asmbl_47218,asmbl_47219,asmbl_47220,asmbl_47221,asmbl_47222	none	STRG.7790.1,STRG.7790.2,STRG.7790.3,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_217,blat.proc3825168.chain_219	7	STRG.7790.4,blat.proc3825168.chain_210,blat.proc3825168.chain_211,blat.proc3825168.chain_212	4
scaffold_1	retained_intron	14355333	14355698	-	asmbl_898	none	Trinity_GG_547_c0_g1_i3,blat.proc3825148.chain_1039	2	blat.proc3825148.chain_1036,blat.proc3825148.chain_1037,blat.proc3825148.chain_1038,blat.proc3825148.chain_1040	4
scaffold_22	alt_acceptor	4282918	4282919	-	asmbl_29242	none	blat.proc3825160.chain_2083	1	STRG.24854.1,STRG.24854.2,STRG.24854.3,blat.proc3825160.chain_2084,blat.proc3825160.chain_2085	5
scaffold_17	retained_intron	8318266	8318617	+	asmbl_18972,asmbl_18973	none	blat.proc3825174.chain_1203,blat.proc3825174.chain_1205	2	STRG.20456.1,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1201,blat.proc3825174.chain_1202	6
scaffold_11	ends_in_intron	9704388	9704388	-	asmbl_6958	none	Trinity_GG_7828_c1_g1_i2,blat.proc3825154.chain_2537	2	STRG.13992.2,STRG.13992.3,Trinity_GG_7828_c1_g1_i3,blat.proc3825154.chain_2538,blat.proc3825170.chain_2504	5
scaffold_20	alt_acceptor	1489815	1489816	+	asmbl_26418	none	STRG.22869.2	1	STRG.22869.3,STRG.22869.4,STRG.22869.6	3
scaffold_7	retained_intron	12428916	12429023	-	asmbl_51223	none	Trinity_GG_5259_c0_g1_i3,blat.proc3825152.chain_1719	2	STRG.9342.1,blat.proc3825152.chain_1721,blat.proc3825152.chain_1722	3
scaffold_11	alternate_exon	2769484	2770026	+	asmbl_5375	none	STRG.13403.1,Trinity_GG_24673_c0_g2_i2,Trinity_GG_24673_c1_g1_i1,blat.proc3825170.chain_1949	4	STRG.13403.2	1
scaffold_14	retained_exon	3551269	3551337	-	asmbl_13022,asmbl_13024	none	STRG.16946.1,STRG.16946.3,blat.proc3825156.chain_1730	3	STRG.16946.2,blat.proc3825156.chain_1729	2
scaffold_28	retained_intron	4194207	4194283	-	asmbl_38200	none	blat.proc3825162.chain_2804	1	STRG.29614.1,blat.proc3825162.chain_2805	2
scaffold_6	skipped_exon	3807411	3808938	+	asmbl_46862,asmbl_46866	none	STRG.7383.5,Trinity_GG_21370_c0_g1_i6,blat.proc3825166.chain_3602	3	STRG.7383.2,STRG.7383.4	2
scaffold_11	retained_intron	3186863	3186973	+	asmbl_5410	none	blat.proc3825170.chain_1958	1	blat.proc3825170.chain_1957	1
scaffold_8	alt_acceptor	3219230	3219231	+	asmbl_52748	none	STRG.9833.2	1	STRG.9833.4,Trinity_GG_22786_c1_g1_i2,blat.proc3825168.chain_2377	3
scaffold_21	skipped_exon	1075351	1076712	+	asmbl_28326	none	STRG.23789.2	1	STRG.23789.1,blat.proc3825176.chain_923	2
scaffold_21	retained_intron	457511	457733	-	asmbl_27322	none	Trinity_GG_13227_c0_g1_i3,blat.proc3825160.chain_857	2	STRG.23740.1,blat.proc3825160.chain_856	2
scaffold_11	retained_intron	2061501	2061594	+	asmbl_5352,asmbl_5353	none	STRG.13366.2,STRG.13366.3,blat.proc3825170.chain_1922,blat.proc3825170.chain_1924	4	STRG.13366.4,blat.proc3825170.chain_1926	2
scaffold_9	spliced_intron	17469882	17470142	-	asmbl_55649	none	STRG.11840.2	1	STRG.11840.1,blat.proc3825154.chain_348	2
scaffold_20	starts_in_intron	9255426	9255426	-	asmbl_26028	none	blat.proc3825160.chain_567	1	STRG.23474.1,blat.proc3825160.chain_568	2
scaffold_19	starts_in_intron	5463704	5463704	+	asmbl_21378	none	blat.proc3825174.chain_3161	1	STRG.22117.1,blat.proc3825174.chain_3157,blat.proc3825174.chain_3160	3
scaffold_2	spliced_intron	7783180	7784364	+	asmbl_24573,asmbl_24575	none	STRG.2075.2,STRG.2075.5,blat.proc3825164.chain_2229	3	STRG.2075.3,STRG.2075.4,Trinity_GG_18484_c0_g1_i1,Trinity_GG_18484_c0_g1_i4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2230,blat.proc3825164.chain_2231	7
scaffold_11	alternate_exon	11999663	12000118	-	asmbl_7061	none	STRG.14126.4	1	Trinity_GG_7897_c0_g1_i1,blat.proc3825154.chain_2673	2
scaffold_14	retained_exon	11139487	11139590	-	asmbl_13449	none	STRG.17450.2,blat.proc3825156.chain_2251	2	STRG.17450.3,blat.proc3825156.chain_2248	2
scaffold_16	spliced_intron	10449577	10449822	+	asmbl_16534,asmbl_16535,asmbl_16536,asmbl_16538	none	STRG.19614.1,STRG.19614.2,STRG.19614.3,STRG.19614.4,Trinity_GG_28027_c0_g1_i1,blat.proc3825174.chain_484,blat.proc3825174.chain_486,blat.proc3825174.chain_488	8	Trinity_GG_28027_c0_g1_i3,blat.proc3825174.chain_485,blat.proc3825174.chain_489	3
scaffold_12	starts_in_intron	4797382	4797382	-	asmbl_8462	none	blat.proc3825154.chain_3177	1	STRG.14656.1,STRG.14656.2,blat.proc3825154.chain_3178	3
scaffold_9	alt_acceptor	571247	571248	+	asmbl_53772	none	STRG.10788.3	1	STRG.10788.1	1
scaffold_10	retained_intron	2668615	2668805	+	asmbl_2987	none	blat.proc3825170.chain_844	1	STRG.12087.1,STRG.12087.2,blat.proc3825170.chain_843	3
scaffold_2	alt_acceptor	11795680	11795681	+	asmbl_24775	none	blat.proc3825164.chain_2460	1	STRG.2281.1,Trinity_GG_18588_c0_g1_i1,blat.proc3825164.chain_2459	3
scaffold_4	alternate_exon	4112610	4112680	-	asmbl_42484,asmbl_42485	none	blat.proc3825150.chain_478,blat.proc3825150.chain_481	2	STRG.4317.2,blat.proc3825150.chain_482	2
scaffold_25	alt_acceptor	3238606	3238607	-	asmbl_34115	none	STRG.27265.1	1	STRG.27265.2	1
scaffold_10	starts_in_intron	5010714	5010714	-	asmbl_4332,asmbl_4333	none	blat.proc3825154.chain_849,blat.proc3825154.chain_850	2	blat.proc3825154.chain_848	1
scaffold_10	retained_intron	17325221	17325630	-	asmbl_5052	none	STRG.13182.3,blat.proc3825154.chain_1777	2	STRG.13182.2,blat.proc3825154.chain_1776	2
scaffold_14	alt_acceptor	7497475	7497476	+	asmbl_12166,asmbl_12167,asmbl_12168	none	STRG.17193.1,STRG.17193.2,STRG.17193.4,blat.proc3825172.chain_1878	4	STRG.17193.3	1
scaffold_1210	alt_donor	2558	2559	-	asmbl_9262	none	STRG.30565.1	1	STRG.30565.2	1
scaffold_4	alt_acceptor	12716823	12716824	-	asmbl_42955	none	STRG.4911.2,blat.proc3825150.chain_998	2	STRG.4911.1,blat.proc3825150.chain_997	2
scaffold_4	retained_intron	13429478	13429669	+	asmbl_41797	none	STRG.4981.1	1	STRG.4981.2,STRG.4981.3	2
scaffold_21	alternate_exon	8003427	8003556	-	asmbl_27879	none	STRG.24336.2,blat.proc3825160.chain_1499	2	STRG.24336.3,blat.proc3825160.chain_1502	2
scaffold_4	ends_in_intron	16577649	16577649	+	asmbl_41978	none	blat.proc3825166.chain_1568	1	STRG.5236.2,blat.proc3825166.chain_1570	2
scaffold_24	retained_intron	879811	879831	+	asmbl_32053	none	STRG.26371.1,blat.proc3825176.chain_3378	2	STRG.26371.3	1
scaffold_16	retained_intron	429984	430051	-	asmbl_16869,asmbl_16875	none	blat.proc3825158.chain_199,blat.proc3825158.chain_201	2	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_196,blat.proc3825158.chain_197,blat.proc3825158.chain_198,blat.proc3825158.chain_200,blat.proc3825158.chain_202,blat.proc3825158.chain_203,blat.proc3825158.chain_204,blat.proc3825158.chain_205	10
scaffold_19	spliced_intron	11489772	11489947	+	asmbl_21698,asmbl_21704	none	STRG.22487.1,Trinity_GG_29743_c0_g1_i3,Trinity_GG_29743_c0_g1_i4,blat.proc3825174.chain_3480,blat.proc3825174.chain_3481	5	Trinity_GG_29743_c0_g1_i1,blat.proc3825174.chain_3482	2
scaffold_9	ends_in_intron	9850554	9850554	+	asmbl_54267	none	Trinity_GG_23657_c0_g1_i1	1	STRG.11357.1,STRG.11357.2,blat.proc3825170.chain_206,blat.proc3825170.chain_207	4
scaffold_7	alt_acceptor	1461345	1461346	-	asmbl_50740	none	STRG.8644.2	1	STRG.8644.1,blat.proc3825152.chain_1144	2
scaffold_13	alt_donor	393773	393774	-	asmbl_9345	none	Trinity_GG_8688_c0_g1_i24,blat.proc3825156.chain_351	2	Trinity_GG_8688_c0_g1_i12,blat.proc3825156.chain_365	2
scaffold_25	alternate_exon	4589367	4589798	-	asmbl_34212,asmbl_34214	none	STRG.27396.1,STRG.27396.2,blat.proc3825162.chain_726	3	STRG.27396.3,blat.proc3825162.chain_725	2
scaffold_3	alternate_exon	8254403	8255632	+	asmbl_40208	none	Trinity_GG_19231_c0_g1_i1,blat.proc3825164.chain_3650	2	STRG.3402.2	1
scaffold_6	spliced_intron	15945144	15945206	+	asmbl_47679	none	STRG.8324.1	1	STRG.8324.2,STRG.8324.3,STRG.8324.4	3
scaffold_20	alt_donor	631160	631161	-	asmbl_25504	none	blat.proc3825158.chain_3611	1	STRG.22765.2,blat.proc3825158.chain_3608	2
scaffold_11	retained_intron	10322368	10322453	+	asmbl_5935	none	blat.proc3825170.chain_2585	1	STRG.14041.1,blat.proc3825170.chain_2586	2
scaffold_5	alt_donor	6004086	6004087	-	asmbl_44074	none	blat.proc3825150.chain_2235	1	STRG.6017.1,blat.proc3825150.chain_2236	2
scaffold_20	spliced_intron	10249203	10249538	-	asmbl_26096	none	STRG.23572.2,blat.proc3825160.chain_664	2	blat.proc3825160.chain_662	1
scaffold_17	spliced_intron	8846095	8846264	+	asmbl_19023,asmbl_19025,asmbl_19028	none	STRG.20495.1,STRG.20495.3,blat.proc3825174.chain_1351,blat.proc3825174.chain_1353	4	STRG.20495.2,Trinity_GG_28543_c0_g1_i6,blat.proc3825174.chain_1355	3
scaffold_5	retained_intron	939420	939502	-	asmbl_43792	none	STRG.5640.1,Trinity_GG_3129_c0_g1_i1	2	STRG.5640.2	1
scaffold_9	retained_exon	6920093	6920161	-	asmbl_55099,asmbl_55100,asmbl_55103	none	STRG.11207.1,STRG.11207.2,blat.proc3825152.chain_3453,blat.proc3825152.chain_3454,blat.proc3825152.chain_3455	5	blat.proc3825152.chain_3450	1
scaffold_3	starts_in_intron	1532018	1532018	-	asmbl_38714	none	STRG.2979.2	1	STRG.2979.1,blat.proc3825148.chain_2810	2
scaffold_21	starts_in_intron	6437604	6437604	+	asmbl_28643	none	Trinity_GG_30694_c0_g1_i3,blat.proc3825176.chain_1355	2	STRG.24163.1	1
scaffold_21	alt_donor	8003454	8003455	-	asmbl_27881	none	STRG.24336.1,blat.proc3825160.chain_1501	2	STRG.24336.2,blat.proc3825160.chain_1499	2
scaffold_22	starts_in_intron	6129917	6129917	+	asmbl_30104,asmbl_30106	none	Trinity_GG_31147_c0_g1_i1,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2122,blat.proc3825176.chain_2124	4	STRG.24968.1,STRG.24968.4,STRG.24968.6,STRG.24968.7,blat.proc3825176.chain_2118,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120,blat.proc3825176.chain_2121	8
scaffold_26	alt_donor	4689204	4689205	-	asmbl_35586,asmbl_35588	none	STRG.28194.1,blat.proc3825162.chain_1412	2	STRG.28194.2,STRG.28194.3,blat.proc3825162.chain_1410	3
scaffold_8	alt_acceptor	6161958	6161959	-	asmbl_51861,asmbl_51862,asmbl_51866,asmbl_51867,asmbl_51868	none	STRG.10030.1,STRG.10030.3,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275	7	blat.proc3825152.chain_2270	1
scaffold_17	spliced_intron	7116861	7117011	-	asmbl_18043,asmbl_18045	none	STRG.20381.1,Trinity_GG_11453_c0_g1_i1,Trinity_GG_11453_c0_g1_i2,blat.proc3825158.chain_1405,blat.proc3825158.chain_1408	5	STRG.20381.2,Trinity_GG_11453_c0_g1_i3,Trinity_GG_11453_c0_g1_i4,blat.proc3825158.chain_1406,blat.proc3825158.chain_1407	5
scaffold_643	skipped_exon	1472	1924	-	asmbl_49489,asmbl_49490	none	STRG.30415.1,STRG.30415.2	2	STRG.30415.3	1
scaffold_20	starts_in_intron	10384363	10384363	+	asmbl_26962	none	blat.proc3825176.chain_668	1	STRG.23583.4	1
scaffold_2	alt_acceptor	14074900	14074901	+	asmbl_24873	none	STRG.2404.2	1	STRG.2404.1	1
scaffold_13	spliced_intron	2570778	2570949	+	asmbl_10624,asmbl_10625,asmbl_10626,asmbl_10628,asmbl_10629	none	STRG.15563.1,STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_327	8	STRG.15563.2,Trinity_GG_25871_c0_g1_i4,blat.proc3825172.chain_323,blat.proc3825172.chain_326	4
scaffold_17	alternate_exon	13965065	13965186	-	asmbl_18392,asmbl_18394	none	STRG.20883.2,blat.proc3825158.chain_1797	2	STRG.20883.1,blat.proc3825158.chain_1798	2
scaffold_11	starts_in_intron	3716181	3716181	-	asmbl_6564	none	blat.proc3825154.chain_2055	1	STRG.13494.1,Trinity_GG_7555_c0_g2_i4	2
scaffold_14	spliced_intron	3364505	3364903	-	asmbl_13004	none	STRG.16915.2,blat.proc3825156.chain_1757	2	STRG.16915.1,Trinity_GG_9489_c0_g1_i2,blat.proc3825156.chain_1756	3
scaffold_13	alt_acceptor	11342247	11342248	+	asmbl_11262	none	STRG.16295.2	1	STRG.16295.1,blat.proc3825172.chain_1076	2
scaffold_16	starts_in_intron	416468	416468	-	asmbl_16868	none	blat.proc3825158.chain_160	1	STRG.19030.1	1
scaffold_12	retained_intron	12349498	12349762	+	asmbl_7992	none	Trinity_GG_25652_c0_g1_i3,blat.proc3825170.chain_3646	2	STRG.15140.1,Trinity_GG_25652_c0_g1_i2,blat.proc3825170.chain_3644,blat.proc3825170.chain_3645	4
scaffold_3	alt_acceptor	17696190	17696191	+	asmbl_40690	none	STRG.3991.1	1	STRG.3991.2,blat.proc3825166.chain_441	2
scaffold_18	alt_donor	7223660	7223661	+	asmbl_20723	none	STRG.21429.1,blat.proc3825174.chain_2444	2	STRG.21429.2,STRG.21429.3,blat.proc3825174.chain_2443	3
scaffold_25	alt_acceptor	3820482	3820483	-	asmbl_34158	none	STRG.27339.2	1	STRG.27339.1,Trinity_GG_15320_c0_g1_i2,Trinity_GG_15320_c0_g1_i3,blat.proc3825162.chain_699,blat.proc3825162.chain_701	5
scaffold_4	alt_acceptor	12606730	12606731	+	asmbl_41732	none	STRG.4900.2,blat.proc3825166.chain_1238	2	STRG.4900.1,blat.proc3825166.chain_1236	2
scaffold_9	retained_exon	18355949	18356027	-	asmbl_55699	none	STRG.11883.1,blat.proc3825154.chain_384	2	STRG.11883.2,blat.proc3825154.chain_385	2
scaffold_16	retained_intron	5393917	5394344	+	asmbl_16213	none	blat.proc3825174.chain_180	1	STRG.19288.1,Trinity_GG_27867_c0_g1_i3,blat.proc3825174.chain_181	3
scaffold_9	spliced_intron	6396892	6397036	-	asmbl_55055	none	STRG.11174.2	1	blat.proc3825152.chain_3363	1
scaffold_5	starts_in_intron	18515058	18515058	-	asmbl_44843	none	STRG.6982.1,blat.proc3825150.chain_3062	2	STRG.6982.3,blat.proc3825150.chain_3061	2
scaffold_1	starts_in_intron	16248567	16248567	+	asmbl_2473	none	Trinity_GG_18004_c0_g1_i3,blat.proc3825164.chain_1318	2	STRG.1135.1	1
scaffold_15	retained_intron	1598964	1599034	+	asmbl_15024	none	blat.proc3825172.chain_2683	1	STRG.17976.1,blat.proc3825172.chain_2684	2
scaffold_20	spliced_intron	8129531	8130806	+	asmbl_26746	none	blat.proc3825176.chain_473	1	STRG.23358.1,Trinity_GG_30170_c0_g1_i1,Trinity_GG_30170_c0_g1_i3,Trinity_GG_30170_c1_g1_i1,blat.proc3825176.chain_471,blat.proc3825176.chain_472,blat.proc3825176.chain_474	7
scaffold_3	starts_in_intron	19028621	19028621	-	asmbl_39638	none	blat.proc3825150.chain_278	1	blat.proc3825150.chain_276,blat.proc3825150.chain_277	2
scaffold_19	retained_intron	8263705	8263839	+	asmbl_21508	none	Trinity_GG_29609_c0_g1_i2,blat.proc3825174.chain_3263	2	Trinity_GG_29609_c0_g1_i1	1
scaffold_7	starts_in_intron	13807362	13807362	+	asmbl_50376	none	STRG.9488.5,Trinity_GG_22599_c1_g1_i1,blat.proc3825168.chain_2038	3	STRG.9488.2	1
scaffold_3	starts_in_intron	6186551	6186551	-	asmbl_38912,asmbl_38915	none	STRG.3266.5,blat.proc3825148.chain_3120	2	STRG.3266.1,STRG.3266.2,STRG.3266.4,blat.proc3825148.chain_3119,blat.proc3825148.chain_3121,blat.proc3825148.chain_3123,blat.proc3825148.chain_3124,blat.proc3825148.chain_3125	8
scaffold_4	skipped_exon	10471942	10472461	+	asmbl_41666	none	STRG.4799.2	1	STRG.4799.1,blat.proc3825166.chain_1174	2
scaffold_8	ends_in_intron	11566061	11566061	+	asmbl_53236	none	blat.proc3825168.chain_2939	1	STRG.10353.1	1
scaffold_19	starts_in_intron	8747085	8747085	+	asmbl_21545	none	Trinity_GG_29645_c1_g1_i3,blat.proc3825174.chain_3326	2	STRG.22323.2	1
scaffold_23	alternate_exon	811093	811236	-	asmbl_30612	none	blat.proc3825160.chain_2754	1	STRG.25583.2	1
scaffold_7	alternate_exon	12367362	12369011	+	asmbl_50247,asmbl_50252	none	STRG.9336.1,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878	3	blat.proc3825168.chain_1879	1
scaffold_1	starts_in_intron	920505	920505	+	asmbl_1440,asmbl_1441	none	STRG.49.2,STRG.49.3,Trinity_GG_17320_c0_g1_i4,Trinity_GG_17320_c0_g1_i6,blat.proc3825164.chain_83,blat.proc3825164.chain_84	6	STRG.49.1,Trinity_GG_17320_c0_g1_i7,blat.proc3825164.chain_85	3
scaffold_3	alt_donor	17345483	17345484	+	asmbl_40666,asmbl_40669	none	STRG.3963.1,blat.proc3825166.chain_470,blat.proc3825166.chain_471	3	STRG.3963.2	1
scaffold_8	retained_exon	5761387	5761428	+	asmbl_52906	none	Trinity_GG_22872_c0_g1_i1,blat.proc3825168.chain_2557	2	STRG.9995.1	1
scaffold_5	ends_in_intron	15042754	15042754	-	asmbl_44632,asmbl_44637	none	STRG.6698.4,STRG.6698.5,blat.proc3825150.chain_2832	3	STRG.6698.2,STRG.6698.3,blat.proc3825150.chain_2828,blat.proc3825150.chain_2829	4
scaffold_22	alternate_exon	2394597	2403753	+	asmbl_29941,asmbl_29942	none	blat.proc3825176.chain_1827,blat.proc3825176.chain_1828	2	blat.proc3825176.chain_1826	1
scaffold_11	alternate_exon	6763287	6763405	-	asmbl_6742	none	STRG.13715.2,blat.proc3825154.chain_2282	2	STRG.13715.1,blat.proc3825154.chain_2283	2
scaffold_16	alt_acceptor	291382	291383	+	asmbl_16015,asmbl_16016,asmbl_16019,asmbl_16020	none	STRG.19019.1,STRG.19019.2,STRG.19019.3,Trinity_GG_27744_c0_g1_i11,Trinity_GG_27744_c0_g1_i2,blat.proc3825172.chain_3687,blat.proc3825172.chain_3690	7	blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	2
scaffold_10	retained_intron	3039893	3040106	+	asmbl_3023	none	blat.proc3825170.chain_806	1	STRG.12119.1,STRG.12119.2,blat.proc3825170.chain_805	3
scaffold_13	alt_acceptor	6990833	6990834	+	asmbl_11004	none	STRG.15985.1,blat.proc3825172.chain_733	2	STRG.15985.2	1
scaffold_6	retained_intron	73979	74164	-	asmbl_48018,asmbl_48019,asmbl_48020	none	STRG.7072.1,STRG.7072.2,STRG.7072.3,Trinity_GG_3947_c0_g1_i4	4	STRG.7072.4	1
scaffold_4	alt_acceptor	12793661	12793662	+	asmbl_41750,asmbl_41752,asmbl_41753,asmbl_41754,asmbl_41756,asmbl_41757	none	STRG.4935.1,STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365,blat.proc3825166.chain_1366,blat.proc3825166.chain_1368,blat.proc3825166.chain_1369	7	Trinity_GG_20068_c0_g1_i1,blat.proc3825166.chain_1370	2
scaffold_18	alternate_exon	2834126	2834261	+	asmbl_20424	none	STRG.21142.4,blat.proc3825174.chain_2046	2	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2056	4
scaffold_11	alt_donor	5007516	5007517	+	asmbl_5537	none	STRG.13591.2,blat.proc3825170.chain_2133	2	STRG.13591.1	1
scaffold_15	spliced_intron	15409801	15409903	+	asmbl_15769,asmbl_15770,asmbl_15774	none	STRG.18930.1,STRG.18930.2,STRG.18930.9,blat.proc3825172.chain_3588,blat.proc3825172.chain_3590	5	STRG.18930.4,STRG.18930.5,STRG.18930.7,blat.proc3825172.chain_3587,blat.proc3825172.chain_3591	5
scaffold_18	spliced_intron	7943323	7944083	-	asmbl_19989	none	STRG.21493.3	1	Trinity_GG_12022_c0_g1_i2,blat.proc3825158.chain_2408	2
scaffold_25	alt_acceptor	4469548	4469549	-	asmbl_34192	none	STRG.27380.2	1	STRG.27380.1	1
scaffold_9	starts_in_intron	2645891	2645891	-	asmbl_54883	none	blat.proc3825152.chain_3159	1	STRG.10906.1,blat.proc3825152.chain_3158	2
scaffold_9	retained_intron	5844925	5845204	-	asmbl_55042	none	Trinity_GG_6153_c0_g1_i1,blat.proc3825152.chain_3329	2	STRG.11151.1,blat.proc3825152.chain_3330	2
scaffold_17	alt_donor	11049154	11049155	+	asmbl_19201	none	STRG.20662.1,blat.proc3825174.chain_1542,blat.proc3825174.chain_1544	3	STRG.20662.2	1
scaffold_7	alt_acceptor	13484632	13484633	-	asmbl_51307	none	STRG.9451.2	1	STRG.9451.1,blat.proc3825152.chain_1774	2
scaffold_21	retained_exon	256485	257152	-	asmbl_27284,asmbl_27288,asmbl_27294,asmbl_27296,asmbl_27297	none	STRG.23725.2,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806	5	STRG.23725.4	1
scaffold_4	starts_in_intron	3383541	3383541	+	asmbl_41194	none	STRG.4276.3	1	STRG.4276.1,STRG.4276.2,blat.proc3825166.chain_745,blat.proc3825166.chain_746,blat.proc3825166.chain_748,blat.proc3825166.chain_749	6
scaffold_28	spliced_intron	226675	226779	-	asmbl_37900,asmbl_37901	none	STRG.29247.1,STRG.29247.2	2	STRG.29247.3	1
scaffold_25	spliced_intron	9292426	9292453	+	asmbl_33803	none	STRG.27744.1	1	Trinity_GG_32639_c1_g1_i1,blat.proc3825178.chain_871	2
scaffold_2	ends_in_intron	14279018	14279018	+	asmbl_24904,asmbl_24906	none	blat.proc3825164.chain_2592,blat.proc3825164.chain_2595	2	STRG.2428.1,STRG.2428.2,STRG.2428.3,STRG.2428.4,blat.proc3825164.chain_2593,blat.proc3825164.chain_2596	6
scaffold_23	alternate_exon	2308053	2310320	+	asmbl_31388	none	blat.proc3825176.chain_2663	1	STRG.25708.2,Trinity_GG_31502_c0_g1_i5,blat.proc3825176.chain_2662	3
scaffold_5	retained_intron	15044005	15044118	-	asmbl_44635	none	Trinity_GG_3732_c0_g1_i1,blat.proc3825150.chain_2826	2	Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2827	2
scaffold_5	retained_intron	5063957	5064081	-	asmbl_44028	none	Trinity_GG_3315_c0_g1_i2,blat.proc3825150.chain_2091	2	STRG.5964.1,Trinity_GG_3315_c0_g1_i4,blat.proc3825150.chain_2090	3
scaffold_9	retained_intron	2468905	2469096	-	asmbl_54876	none	blat.proc3825152.chain_3156	1	STRG.10892.1,blat.proc3825152.chain_3157	2
scaffold_23	alt_acceptor	2219149	2219150	-	asmbl_30714,asmbl_30716	none	STRG.25698.1,STRG.25698.3	2	STRG.25698.2,STRG.25698.5,STRG.25698.6	3
scaffold_19	alt_donor	12812802	12812803	-	asmbl_22542	none	STRG.22601.2,Trinity_GG_12576_c0_g1_i2,blat.proc3825158.chain_3378	3	STRG.22601.1,blat.proc3825158.chain_3379	2
scaffold_4	retained_intron	18348146	18348526	+	asmbl_42099	none	STRG.5441.2,blat.proc3825166.chain_1752	2	STRG.5441.1,blat.proc3825166.chain_1751	2
scaffold_2	retained_intron	8322079	8322426	+	asmbl_24639	none	Trinity_GG_18527_c0_g1_i2,blat.proc3825164.chain_2338	2	STRG.2119.1,STRG.2119.2,blat.proc3825164.chain_2339,blat.proc3825164.chain_2340	4
scaffold_28	alt_donor	540454	540455	-	asmbl_37909,asmbl_37911,asmbl_37912	none	STRG.29277.1,STRG.29277.3,blat.proc3825162.chain_2442,blat.proc3825162.chain_2443	4	STRG.29277.2,blat.proc3825162.chain_2441	2
scaffold_2	skipped_exon	7407518	7409546	-	asmbl_23251,asmbl_23258	none	STRG.2065.3,STRG.2065.6,Trinity_GG_1101_c0_g1_i4,blat.proc3825148.chain_1982	4	STRG.2065.4,Trinity_GG_1101_c0_g1_i5,blat.proc3825148.chain_1986	3
scaffold_12	alt_acceptor	6526861	6526862	-	asmbl_8541	none	STRG.14748.1	1	STRG.14748.2,blat.proc3825154.chain_3260	2
scaffold_6	ends_in_intron	4584219	4584219	-	asmbl_48342	none	STRG.7437.2	1	STRG.7437.1	1
scaffold_19	starts_in_intron	8371	8371	+	asmbl_21168	none	STRG.21816.2	1	STRG.21816.1	1
scaffold_4	spliced_intron	5648812	5648953	-	asmbl_42626	none	blat.proc3825150.chain_670	1	Trinity_GG_2475_c1_g1_i2,blat.proc3825150.chain_671,blat.proc3825150.chain_673,blat.proc3825150.chain_674	4
scaffold_1	alt_donor	2127991	2127992	+	asmbl_1535	none	STRG.147.2,blat.proc3825164.chain_255	2	STRG.147.1,STRG.147.3,blat.proc3825164.chain_256,blat.proc3825164.chain_257	4
scaffold_2	retained_intron	8055440	8055585	-	asmbl_23305	none	STRG.2094.4,blat.proc3825148.chain_2118	2	STRG.2094.2,blat.proc3825148.chain_2119	2
scaffold_3	starts_in_intron	10853592	10853592	+	asmbl_40309	none	STRG.3525.2	1	STRG.3525.1,blat.proc3825166.chain_9	2
scaffold_23	retained_intron	10990921	10990994	-	asmbl_31188	none	blat.proc3825160.chain_3397	1	STRG.26306.1,blat.proc3825160.chain_3398	2
scaffold_1	retained_intron	11626963	11627419	-	asmbl_646,asmbl_648,asmbl_649	none	Trinity_GG_386_c0_g1_i7,blat.proc3825148.chain_719,blat.proc3825148.chain_722,blat.proc3825148.chain_723	4	STRG.769.1,Trinity_GG_386_c0_g1_i1,blat.proc3825148.chain_721	3
scaffold_6	retained_intron	19075642	19075763	+	asmbl_47868,asmbl_47871,asmbl_47872	none	STRG.8575.1,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i5,Trinity_GG_21983_c0_g1_i6,blat.proc3825168.chain_948,blat.proc3825168.chain_949,blat.proc3825168.chain_951	7	STRG.8575.3,Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_952	3
scaffold_27	ends_in_intron	3092822	3092822	-	asmbl_36891	none	Trinity_GG_16154_c0_g1_i2,blat.proc3825162.chain_2063	2	STRG.28796.2,STRG.28796.4,STRG.28796.5,STRG.28796.6,blat.proc3825162.chain_2065,blat.proc3825162.chain_2066,blat.proc3825162.chain_2068	7
scaffold_6	skipped_exon	18050591	18052244	-	asmbl_49226	none	STRG.8487.4	1	STRG.8487.1,STRG.8487.2,STRG.8487.3,blat.proc3825152.chain_918,blat.proc3825152.chain_919,blat.proc3825152.chain_920	6
scaffold_8	alt_donor	6019010	6019011	+	asmbl_52922	none	STRG.10013.1,blat.proc3825168.chain_2622	2	STRG.10013.4,blat.proc3825168.chain_2619	2
scaffold_23	spliced_intron	2164596	2164823	-	asmbl_30700,asmbl_30701	none	STRG.25690.1,STRG.25690.2	2	blat.proc3825160.chain_2856	1
scaffold_28	spliced_intron	293837	294231	+	asmbl_37267	none	STRG.29263.1,blat.proc3825178.chain_2490	2	STRG.29263.3,blat.proc3825178.chain_2492	2
scaffold_22	alt_acceptor	9884824	9884825	+	asmbl_30325	none	STRG.25327.2	1	STRG.25327.1,Trinity_GG_31313_c0_g1_i1,blat.proc3825176.chain_2380	3
scaffold_22	starts_in_intron	3799004	3799004	-	asmbl_29190	none	STRG.24810.2,blat.proc3825160.chain_1930	2	STRG.24810.1	1
scaffold_5	alt_acceptor	981757	981758	-	asmbl_43802	none	STRG.5647.1,blat.proc3825150.chain_1873	2	STRG.5647.2	1
scaffold_5	starts_in_intron	9075203	9075203	+	asmbl_45597	none	Trinity_GG_20725_c0_g1_i3,blat.proc3825166.chain_2464	2	STRG.6245.1,STRG.6245.2,blat.proc3825166.chain_2461,blat.proc3825166.chain_2462,blat.proc3825166.chain_2463	5
scaffold_14	ends_in_intron	7304895	7304895	-	asmbl_13191	none	Trinity_GG_9622_c0_g1_i1,blat.proc3825156.chain_1972	2	STRG.17173.1,blat.proc3825156.chain_1973	2
scaffold_10	starts_in_intron	6475774	6475774	-	asmbl_4464,asmbl_4468,asmbl_4469	none	blat.proc3825154.chain_1049,blat.proc3825154.chain_1053,blat.proc3825154.chain_1054	3	blat.proc3825154.chain_1050,blat.proc3825154.chain_1051,blat.proc3825154.chain_1052	3
scaffold_25	retained_exon	7342152	7343226	+	asmbl_33671	none	STRG.27589.1,Trinity_GG_32527_c1_g1_i1,blat.proc3825178.chain_699	3	STRG.27589.3	1
scaffold_17	alt_donor	536145	536146	+	asmbl_18544,asmbl_18550	none	STRG.19902.3,blat.proc3825174.chain_786,blat.proc3825174.chain_789	3	STRG.19902.1,STRG.19902.2,blat.proc3825174.chain_784,blat.proc3825174.chain_787,blat.proc3825174.chain_788	5
scaffold_19	spliced_intron	8805742	8805817	+	asmbl_21556	none	STRG.22329.2	1	STRG.22329.3	1
scaffold_13	spliced_intron	9254576	9254748	+	asmbl_11186	none	STRG.16187.1,blat.proc3825172.chain_879	2	blat.proc3825172.chain_880	1
scaffold_22	retained_intron	9340091	9340165	-	asmbl_29537	none	STRG.25279.1,blat.proc3825160.chain_2434	2	STRG.25279.2	1
scaffold_1	starts_in_intron	10856167	10856167	+	asmbl_2032	none	Trinity_GG_17762_c0_g1_i4,blat.proc3825164.chain_852	2	STRG.711.1,STRG.711.3,blat.proc3825164.chain_850	3
scaffold_26	spliced_intron	6350832	6351171	-	asmbl_35680,asmbl_35684	none	STRG.28335.2,STRG.28335.6,blat.proc3825162.chain_1570	3	STRG.28335.4,blat.proc3825162.chain_1569	2
scaffold_4	starts_in_intron	7013628	7013628	+	asmbl_41440	none	Trinity_GG_19824_c0_g1_i2	1	STRG.4535.1,blat.proc3825166.chain_986	2
scaffold_14	alt_donor	8216516	8216517	-	asmbl_13251,asmbl_13252,asmbl_13254,asmbl_13255,asmbl_13256	none	STRG.17234.1,STRG.17234.2,blat.proc3825156.chain_2055,blat.proc3825156.chain_2056,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	7	STRG.17234.3	1
scaffold_6	skipped_exon	3028736	3031447	+	asmbl_46794	none	STRG.7311.2,blat.proc3825166.chain_3507	2	STRG.7311.1,blat.proc3825166.chain_3506	2
scaffold_4	retained_intron	9353119	9353325	-	asmbl_42807,asmbl_42808	none	STRG.4735.1,blat.proc3825150.chain_946,blat.proc3825150.chain_949,blat.proc3825150.chain_950	4	blat.proc3825150.chain_947	1
scaffold_11	alt_donor	17366484	17366485	-	asmbl_7265	none	STRG.14404.1,blat.proc3825154.chain_2892	2	blat.proc3825154.chain_2893	1
scaffold_9	retained_exon	14039466	14039546	+	asmbl_54517	none	STRG.11665.3,Trinity_GG_23791_c0_g1_i4,blat.proc3825170.chain_423	3	STRG.11665.1,STRG.11665.2,Trinity_GG_23791_c0_g1_i3,blat.proc3825170.chain_424	4
scaffold_15	ends_in_intron	7182608	7182608	-	asmbl_14279	none	Trinity_GG_10237_c0_g2_i1,blat.proc3825156.chain_3044	2	STRG.18310.2,blat.proc3825156.chain_3043	2
scaffold_14	alternate_exon	16026802	16026891	+	asmbl_12658	none	STRG.17844.1,blat.proc3825172.chain_2499	2	STRG.17844.2	1
scaffold_14	retained_intron	1361497	1361623	-	asmbl_12869	none	STRG.16786.1,Trinity_GG_9406_c0_g1_i2	2	STRG.16786.2	1
scaffold_1	alt_donor	14280617	14280618	+	asmbl_2370	none	STRG.1025.1,Trinity_GG_17933_c0_g1_i1,blat.proc3825164.chain_1205	3	STRG.1025.2	1
scaffold_8	starts_in_intron	8560771	8560771	-	asmbl_51960	none	blat.proc3825152.chain_2411	1	STRG.10115.1,blat.proc3825152.chain_2410	2
scaffold_2	spliced_intron	4788146	4788491	+	asmbl_24382	none	STRG.1899.1,blat.proc3825164.chain_2023	2	STRG.1899.2,STRG.1899.3,blat.proc3825164.chain_2022	3
scaffold_2	spliced_intron	7775380	7775866	-	asmbl_23274,asmbl_23276	none	STRG.2072.1,STRG.2072.2,blat.proc3825148.chain_2099,blat.proc3825148.chain_2101	4	STRG.2072.3,blat.proc3825148.chain_2100	2
scaffold_6	alternate_exon	12554855	12555019	-	asmbl_48825	none	STRG.8017.1	1	STRG.8017.3,blat.proc3825152.chain_421	2
scaffold_15	starts_in_intron	16364553	16364553	+	asmbl_15855	none	Trinity_GG_27696_c0_g1_i3,blat.proc3825172.chain_3594	2	STRG.18989.1,blat.proc3825172.chain_3595,blat.proc3825172.chain_3596	3
scaffold_15	alt_acceptor	7895088	7895089	+	asmbl_15307	none	STRG.18365.2	1	STRG.18365.1	1
scaffold_1	spliced_intron	14202631	14202724	+	asmbl_2344,asmbl_2345,asmbl_2346,asmbl_2347	none	STRG.1008.1,STRG.1008.2,Trinity_GG_17929_c0_g1_i5,Trinity_GG_17929_c0_g1_i6,Trinity_GG_17929_c0_g1_i9,blat.proc3825164.chain_1190,blat.proc3825164.chain_1191,blat.proc3825164.chain_1192,blat.proc3825164.chain_1193	9	Trinity_GG_17929_c0_g1_i10,blat.proc3825164.chain_1188	2
scaffold_3	ends_in_intron	14309782	14309782	-	asmbl_39351,asmbl_39353	none	STRG.3771.2,STRG.3771.3,Trinity_GG_2080_c0_g1_i2,blat.proc3825148.chain_3678	4	STRG.3771.1	1
scaffold_19	starts_in_intron	162716	162716	+	asmbl_21183	none	blat.proc3825174.chain_2912	1	STRG.21830.1,STRG.21830.2,Trinity_GG_29406_c0_g1_i2,Trinity_GG_29406_c0_g1_i3,blat.proc3825174.chain_2910,blat.proc3825174.chain_2911	6
scaffold_17	retained_exon	9004562	9004637	+	asmbl_19056,asmbl_19058	none	STRG.20525.3,blat.proc3825174.chain_1322	2	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4
scaffold_20	starts_in_intron	7858964	7858964	-	asmbl_25933	none	blat.proc3825160.chain_417	1	STRG.23336.1,STRG.23336.2,blat.proc3825160.chain_415,blat.proc3825160.chain_416	4
scaffold_8	retained_exon	11718787	11718808	-	asmbl_52159	none	STRG.10370.2	1	STRG.10370.1,blat.proc3825152.chain_2601	2
scaffold_12	spliced_intron	4722673	4722768	-	asmbl_8432,asmbl_8434	none	STRG.14649.5,blat.proc3825154.chain_3100,blat.proc3825154.chain_3101	3	STRG.14649.1,STRG.14649.3,blat.proc3825154.chain_3097	3
scaffold_21	starts_in_intron	8001726	8001726	-	asmbl_27880	none	STRG.24336.4,blat.proc3825160.chain_1500	2	STRG.24336.1,STRG.24336.2,blat.proc3825160.chain_1499,blat.proc3825160.chain_1501	4
scaffold_13	retained_intron	4602251	4602712	-	asmbl_9639,asmbl_9649,asmbl_9652	none	STRG.15796.3,Trinity_GG_8874_c0_g1_i1,blat.proc3825156.chain_662,blat.proc3825156.chain_667,blat.proc3825156.chain_670	5	STRG.15796.1	1
scaffold_2	alt_donor	18914611	18914612	-	asmbl_23834	none	STRG.2767.2,Trinity_GG_1525_c0_g1_i2,blat.proc3825148.chain_2713	3	STRG.2767.1,Trinity_GG_1525_c0_g1_i3,blat.proc3825148.chain_2715	3
scaffold_9	alternate_exon	11852019	11852170	-	asmbl_55334	none	STRG.11503.2,blat.proc3825152.chain_3713	2	STRG.11503.1,blat.proc3825152.chain_3714	2
scaffold_7	alt_acceptor	13484595	13484596	-	asmbl_51306	none	STRG.9451.1,blat.proc3825152.chain_1774	2	STRG.9451.2	1
scaffold_11	spliced_intron	9018053	9018198	-	asmbl_6901,asmbl_6904,asmbl_6905	none	STRG.13940.1,blat.proc3825154.chain_2408,blat.proc3825154.chain_2410	3	STRG.13940.2,blat.proc3825154.chain_2405	2
scaffold_3	starts_in_intron	13702615	13702615	+	asmbl_40451	none	blat.proc3825166.chain_220,blat.proc3825166.chain_223	2	STRG.3717.1,STRG.3717.2,blat.proc3825166.chain_218,blat.proc3825166.chain_222	4
scaffold_3	spliced_intron	6659645	6660509	+	asmbl_40106,asmbl_40111	none	STRG.3295.4,blat.proc3825164.chain_3560,blat.proc3825164.chain_3569	3	STRG.3295.3,Trinity_GG_19180_c0_g1_i4,blat.proc3825164.chain_3561,blat.proc3825164.chain_3564,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3570,blat.proc3825164.chain_3571	8
scaffold_23	retained_intron	2160936	2161036	+	asmbl_31378	none	blat.proc3825176.chain_2629	1	STRG.25689.1,blat.proc3825176.chain_2630	2
scaffold_1	alt_acceptor	9312678	9312679	+	asmbl_1982	none	STRG.627.1,blat.proc3825164.chain_774	2	STRG.627.2	1
scaffold_10	alt_donor	4058494	4058495	-	asmbl_4253	none	STRG.12246.6,blat.proc3825154.chain_823	2	STRG.12246.7,Trinity_GG_6843_c2_g1_i1,blat.proc3825154.chain_821,blat.proc3825154.chain_827	4
scaffold_5	spliced_intron	17210337	17210461	-	asmbl_44795,asmbl_44796,asmbl_44797,asmbl_44799	none	STRG.6894.1,blat.proc3825150.chain_3039,blat.proc3825150.chain_3040,blat.proc3825150.chain_3041,blat.proc3825150.chain_3043	5	STRG.6894.2,blat.proc3825150.chain_3042	2
scaffold_17	retained_intron	793736	793904	+	asmbl_18575	none	blat.proc3825174.chain_823	1	STRG.19934.1,STRG.19934.2,STRG.19934.3	3
scaffold_17	retained_intron	3998821	3998969	+	asmbl_18754,asmbl_18755,asmbl_18758	none	STRG.20160.1,blat.proc3825174.chain_1032,blat.proc3825174.chain_1033	3	STRG.20160.2,STRG.20160.3,STRG.20160.4,blat.proc3825174.chain_1031,blat.proc3825174.chain_1034,blat.proc3825174.chain_1035	6
scaffold_15	starts_in_intron	8619534	8619534	+	asmbl_15344	none	blat.proc3825172.chain_3045	1	STRG.18409.1,STRG.18409.2,blat.proc3825172.chain_3042,blat.proc3825172.chain_3043,blat.proc3825172.chain_3044	5
scaffold_24	ends_in_intron	10347295	10347295	-	asmbl_33183	none	blat.proc3825162.chain_344	1	STRG.26996.1,STRG.26996.2	2
scaffold_4	retained_intron	19539846	19539879	-	asmbl_43448	none	STRG.5541.2,Trinity_GG_3107_c0_g1_i2,blat.proc3825150.chain_1719	3	STRG.5541.3	1
scaffold_13	alt_acceptor	11342241	11342242	+	asmbl_11261	none	STRG.16295.1,blat.proc3825172.chain_1076	2	STRG.16295.2	1
scaffold_28	ends_in_intron	2340747	2340747	-	asmbl_38046	none	Trinity_GG_16495_c0_g1_i4,blat.proc3825162.chain_2606	2	Trinity_GG_16495_c0_g1_i3,blat.proc3825162.chain_2607,blat.proc3825162.chain_2609	3
scaffold_12	alternate_exon	13393932	13404378	-	asmbl_8945	none	STRG.15219.5,blat.proc3825156.chain_5	2	STRG.15219.2	1
scaffold_6	retained_intron	12990908	12991437	-	asmbl_48857,asmbl_48858	none	STRG.8068.2,STRG.8068.4,blat.proc3825152.chain_489,blat.proc3825152.chain_495	4	STRG.8068.1,STRG.8068.3,blat.proc3825152.chain_492	3
scaffold_11	spliced_intron	5525403	5525484	+	asmbl_5566	none	STRG.13624.1,blat.proc3825170.chain_2163	2	blat.proc3825170.chain_2162	1
scaffold_18	alternate_exon	1512505	1512941	+	asmbl_20360	none	STRG.21044.3	1	STRG.21044.4	1
scaffold_21	retained_intron	5468667	5468783	-	asmbl_27656	none	Trinity_GG_13397_c0_g1_i1,blat.proc3825160.chain_1156	2	STRG.24076.1,blat.proc3825160.chain_1155	2
scaffold_15	starts_in_intron	6516463	6516463	+	asmbl_15253	none	blat.proc3825172.chain_2936	1	STRG.18289.1,blat.proc3825172.chain_2935	2
scaffold_21	spliced_intron	3726877	3726965	-	asmbl_27527,asmbl_27528,asmbl_27530	none	STRG.23962.1,STRG.23962.2,blat.proc3825160.chain_1088,blat.proc3825160.chain_1089,blat.proc3825160.chain_1091	5	STRG.23962.3	1
scaffold_15	retained_intron	11941297	11941598	-	asmbl_14541	none	blat.proc3825156.chain_3462	1	STRG.18636.1,blat.proc3825156.chain_3459	2
scaffold_22	starts_in_intron	505455	505455	-	asmbl_29090,asmbl_29091	none	blat.proc3825160.chain_1862,blat.proc3825160.chain_1868	2	STRG.24702.1,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i4,blat.proc3825160.chain_1865,blat.proc3825160.chain_1867,blat.proc3825160.chain_1869	7
scaffold_13	alternate_exon	15636385	15636464	+	asmbl_11520	none	STRG.16607.1,blat.proc3825172.chain_1408	2	STRG.16607.3	1
scaffold_23	alt_acceptor	6346021	6346022	+	asmbl_31622	none	STRG.25987.1,blat.proc3825176.chain_2926	2	STRG.25987.2	1
scaffold_15	retained_intron	12432664	12433619	+	asmbl_15567,asmbl_15568,asmbl_15569	none	blat.proc3825172.chain_3337,blat.proc3825172.chain_3338,blat.proc3825172.chain_3340,blat.proc3825172.chain_3341,blat.proc3825172.chain_3343	5	STRG.18701.1,Trinity_GG_27574_c0_g1_i7,blat.proc3825172.chain_3339,blat.proc3825172.chain_3342,blat.proc3825172.chain_3344	5
scaffold_4	alt_donor	18758288	18758289	-	asmbl_43387	none	STRG.5465.1	1	STRG.5465.3	1
scaffold_2	starts_in_intron	4445356	4445356	-	asmbl_23076	none	STRG.1873.2	1	STRG.1873.1,Trinity_GG_1040_c0_g1_i1,blat.proc3825148.chain_1845,blat.proc3825148.chain_1846	4
scaffold_2	spliced_intron	5360023	5360118	+	asmbl_24415	none	STRG.1943.1,blat.proc3825164.chain_2064	2	STRG.1943.2,blat.proc3825164.chain_2063	2
scaffold_24	retained_exon	9592087	9592398	-	asmbl_33139	none	STRG.26947.2	1	STRG.26947.1,blat.proc3825162.chain_297	2
scaffold_11	alt_acceptor	12679008	12679009	-	asmbl_7095	none	STRG.14162.1	1	STRG.14162.2	1
scaffold_15	spliced_intron	14323219	14324235	-	asmbl_14719	none	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2	Trinity_GG_10597_c0_g1_i3,Trinity_GG_10597_c0_g1_i4,blat.proc3825156.chain_3718	3
scaffold_4	spliced_intron	19354316	19354420	-	asmbl_43433,asmbl_43435,asmbl_43436,asmbl_43438	none	STRG.5523.1,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	5	STRG.5523.2,Trinity_GG_3086_c0_g1_i9,blat.proc3825150.chain_1681	3
scaffold_6	retained_exon	12520880	12520945	-	asmbl_48816,asmbl_48819	none	STRG.8011.4,blat.proc3825152.chain_398	2	STRG.8011.3	1
scaffold_15	alt_acceptor	15163559	15163560	+	asmbl_15723	none	STRG.18905.2	1	STRG.18905.1,blat.proc3825172.chain_3484	2
scaffold_12	spliced_intron	15425487	15425594	-	asmbl_9078,asmbl_9079	none	STRG.15346.1,STRG.15346.2,blat.proc3825156.chain_194,blat.proc3825156.chain_196	4	blat.proc3825156.chain_195	1
scaffold_3	alternate_exon	3237315	3249029	+	asmbl_39939	none	STRG.3072.2,blat.proc3825164.chain_3376	2	STRG.3072.6,Trinity_GG_19083_c2_g1_i1,blat.proc3825164.chain_3396	3
scaffold_14	spliced_intron	8610516	8610600	-	asmbl_13328,asmbl_13329	none	STRG.17296.1,STRG.17296.2,blat.proc3825156.chain_2120,blat.proc3825156.chain_2122	4	Trinity_GG_9707_c0_g1_i1,blat.proc3825156.chain_2123	2
scaffold_6	alternate_exon	12114680	12117099	+	asmbl_47377	none	STRG.7985.1	1	Trinity_GG_21681_c0_g1_i3,blat.proc3825168.chain_428	2
scaffold_18	starts_in_intron	7684899	7684899	+	asmbl_20779	none	Trinity_GG_29179_c0_g3_i1,blat.proc3825174.chain_2521	2	STRG.21474.1,STRG.21474.2,STRG.21474.3,STRG.21474.4,Trinity_GG_29179_c0_g1_i14,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	12
scaffold_6	ends_in_intron	12006474	12006474	+	asmbl_47367,asmbl_47368	none	STRG.7971.2,STRG.7971.3,blat.proc3825168.chain_416	3	STRG.7971.1	1
scaffold_22	retained_intron	6131523	6131689	+	asmbl_30100	none	STRG.24968.7,Trinity_GG_31147_c0_g1_i4,blat.proc3825176.chain_2123	3	STRG.24968.4,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120,blat.proc3825176.chain_2124	5
scaffold_24	retained_exon	4318839	4319024	+	asmbl_32189	none	STRG.26600.1	1	STRG.26600.3	1
scaffold_15	retained_intron	15158080	15158445	+	asmbl_15717,asmbl_15718	none	Trinity_GG_27624_c0_g1_i6,Trinity_GG_27624_c0_g1_i8,blat.proc3825172.chain_3436,blat.proc3825172.chain_3438	4	blat.proc3825172.chain_3439,blat.proc3825172.chain_3440	2
scaffold_15	alt_donor	15353701	15353702	+	asmbl_15759,asmbl_15762	none	STRG.18922.3,Trinity_GG_27686_c0_g1_i4,blat.proc3825172.chain_3565	3	Trinity_GG_27686_c0_g1_i7,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3561	4
scaffold_17	ends_in_intron	14275646	14275646	-	asmbl_18418	none	STRG.20900.2,Trinity_GG_11729_c1_g1_i1,blat.proc3825158.chain_1876	3	STRG.20900.1	1
scaffold_2	alt_acceptor	19773020	19773021	+	asmbl_25285,asmbl_25286,asmbl_25287	none	STRG.2827.1,blat.proc3825164.chain_3072,blat.proc3825164.chain_3073,blat.proc3825164.chain_3074	4	STRG.2827.2	1
scaffold_2	spliced_intron	15270016	15270269	+	asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25018,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	6	blat.proc3825164.chain_2618	1
scaffold_9	starts_in_intron	6903877	6903877	-	asmbl_55089	none	blat.proc3825152.chain_3394	1	STRG.11203.1,blat.proc3825152.chain_3389,blat.proc3825152.chain_3393	3
scaffold_13	alternate_exon	366022	367464	-	asmbl_9307,asmbl_9317,asmbl_9318	none	STRG.15442.1,STRG.15442.3,STRG.15442.4,Trinity_GG_8663_c0_g1_i6,blat.proc3825156.chain_295	5	STRG.15442.2,Trinity_GG_8663_c0_g1_i17,blat.proc3825156.chain_296	3
scaffold_14	alt_donor	2464705	2464706	-	asmbl_12953	none	STRG.16856.2,blat.proc3825156.chain_1687	2	STRG.16856.1,STRG.16856.3	2
scaffold_2	spliced_intron	7942373	7942526	+	asmbl_24598,asmbl_24599,asmbl_24601,asmbl_24602	none	STRG.2090.1,STRG.2090.2,Trinity_GG_18487_c0_g1_i1,Trinity_GG_18487_c0_g1_i7,Trinity_GG_18487_c0_g1_i8,blat.proc3825164.chain_2244,blat.proc3825164.chain_2249,blat.proc3825164.chain_2250	8	Trinity_GG_18487_c0_g1_i6,blat.proc3825164.chain_2247	2
scaffold_25	retained_intron	6301207	6301328	+	asmbl_33609,asmbl_33616,asmbl_33617,asmbl_33618	none	STRG.27515.1,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_559	4	STRG.27515.2,blat.proc3825178.chain_557,blat.proc3825178.chain_558,blat.proc3825178.chain_560	4
scaffold_12	alt_donor	1205425	1205426	-	asmbl_8294	none	STRG.14456.1	1	blat.proc3825170.chain_3007	1
scaffold_3	alternate_exon	13177542	13180324	+	asmbl_40436	none	STRG.3682.1	1	STRG.3682.2,blat.proc3825166.chain_164	2
scaffold_27	alternate_exon	5685486	5685522	+	asmbl_36358	none	STRG.28977.5	1	STRG.28977.1,STRG.28977.3,STRG.28977.4,blat.proc3825178.chain_2111,blat.proc3825178.chain_2114,blat.proc3825178.chain_2115	6
scaffold_12	spliced_intron	2987278	2987365	-	asmbl_8341	none	STRG.14535.1	1	STRG.14535.2,Trinity_GG_8109_c1_g1_i1	2
scaffold_21	alternate_exon	730477	730899	+	asmbl_28289	none	STRG.23764.2,Trinity_GG_30474_c0_g1_i2,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_969,blat.proc3825176.chain_971	5	STRG.23764.1	1
scaffold_18	alt_donor	3798322	3798323	-	asmbl_19771	none	STRG.21197.3,Trinity_GG_11882_c0_g1_i3,blat.proc3825158.chain_2170,blat.proc3825158.chain_2178	4	STRG.21197.1,blat.proc3825158.chain_2176,blat.proc3825158.chain_2179	3
scaffold_7	ends_in_intron	4036405	4036405	+	asmbl_49712,asmbl_49713	none	Trinity_GG_22135_c0_g1_i3,Trinity_GG_22135_c0_g1_i4,blat.proc3825168.chain_1241,blat.proc3825168.chain_1242	4	STRG.8801.1,STRG.8801.2,Trinity_GG_22135_c0_g1_i1,blat.proc3825168.chain_1243	4
scaffold_5	alternate_exon	989948	990044	-	asmbl_43804,asmbl_43807	none	STRG.5650.1,STRG.5650.4,blat.proc3825150.chain_1881	3	STRG.5650.2,STRG.5650.3,blat.proc3825150.chain_1880	3
scaffold_9	spliced_intron	11877608	11877697	+	asmbl_54391	none	STRG.11511.2	1	STRG.11511.1,blat.proc3825170.chain_334	2
scaffold_21	spliced_intron	2475393	2475501	-	asmbl_27456,asmbl_27457,asmbl_27462	none	STRG.23874.1,blat.proc3825160.chain_1043,blat.proc3825160.chain_1045,blat.proc3825160.chain_1047,blat.proc3825160.chain_1048	5	STRG.23874.2	1
scaffold_1	retained_intron	5618829	5618888	+	asmbl_1731,asmbl_1733	none	STRG.355.1,STRG.355.2	2	STRG.355.3	1
scaffold_27	starts_in_intron	3016409	3016409	+	asmbl_36163	none	STRG.28790.2	1	STRG.28790.1	1
scaffold_11	alt_donor	7924769	7924770	+	asmbl_5700	none	STRG.13804.6	1	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3
scaffold_14	retained_intron	3418982	3419012	+	asmbl_11946	none	STRG.16927.1,Trinity_GG_26613_c0_g1_i1	2	STRG.16927.2	1
scaffold_26	alt_donor	4818341	4818342	+	asmbl_34928	none	blat.proc3825178.chain_1219	1	STRG.28202.1,blat.proc3825178.chain_1220,blat.proc3825178.chain_1222	3
scaffold_3	spliced_intron	19884864	19885401	-	asmbl_39669,asmbl_39674	none	STRG.4100.3,STRG.4100.4,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_245	4	Trinity_GG_2243_c1_g1_i6,blat.proc3825150.chain_247,blat.proc3825150.chain_249	3
scaffold_18	skipped_exon	8865903	8866225	-	asmbl_20027,asmbl_20028,asmbl_20029,asmbl_20032	none	STRG.21549.2,blat.proc3825158.chain_2354,blat.proc3825158.chain_2355,blat.proc3825158.chain_2359,blat.proc3825158.chain_2362	5	blat.proc3825158.chain_2358,blat.proc3825158.chain_2360,blat.proc3825158.chain_2361	3
scaffold_6	retained_intron	3292218	3292322	+	asmbl_46827	none	blat.proc3825166.chain_3456	1	STRG.7335.1,blat.proc3825166.chain_3457	2
scaffold_14	alt_donor	2850221	2850222	+	asmbl_11889	none	STRG.16882.2	1	STRG.16882.1,Trinity_GG_26591_c0_g1_i1,blat.proc3825172.chain_1646	3
scaffold_9	starts_in_intron	12070151	12070151	-	asmbl_55350	none	STRG.11529.3	1	STRG.11529.2	1
scaffold_21	alternate_exon	11257953	11258539	-	asmbl_28106	none	STRG.24598.1	1	STRG.24598.2	1
scaffold_2	skipped_exon	7469617	7471000	-	asmbl_23263	none	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063,blat.proc3825148.chain_2064	6
scaffold_6	starts_in_intron	8460449	8460449	+	asmbl_47130	none	blat.proc3825168.chain_151	1	STRG.7725.2,STRG.7725.3,STRG.7725.4,blat.proc3825168.chain_153	4
scaffold_7	retained_intron	9149763	9149863	+	asmbl_50069	none	Trinity_GG_22380_c0_g1_i1,blat.proc3825168.chain_1651	2	STRG.9132.1	1
scaffold_3	alt_donor	17365192	17365193	-	asmbl_39547,asmbl_39548,asmbl_39549,asmbl_39551,asmbl_39554,asmbl_39555,asmbl_39557	none	STRG.3971.1,STRG.3971.2,STRG.3971.4,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_181,blat.proc3825150.chain_182,blat.proc3825150.chain_184,blat.proc3825150.chain_185	9	blat.proc3825150.chain_179	1
scaffold_6	alternate_exon	16599184	16599417	-	asmbl_49145	none	STRG.8385.3	1	STRG.8385.1,STRG.8385.2,blat.proc3825152.chain_770,blat.proc3825152.chain_772	4
scaffold_14	retained_intron	4699179	4699324	-	asmbl_13064	none	STRG.17005.1,Trinity_GG_9545_c0_g1_i1,blat.proc3825156.chain_1836	3	STRG.17005.2	1
scaffold_12	ends_in_intron	12801064	12801064	+	asmbl_8021	none	blat.proc3825170.chain_3622	1	STRG.15177.1,STRG.15177.2,blat.proc3825170.chain_3619,blat.proc3825170.chain_3621	4
scaffold_22	starts_in_intron	7119942	7119942	+	asmbl_30157	none	Trinity_GG_31177_c0_g1_i1,blat.proc3825176.chain_2178	2	STRG.25047.1,STRG.25047.2,blat.proc3825176.chain_2179,blat.proc3825176.chain_2181	4
scaffold_27	starts_in_intron	6601030	6601030	-	asmbl_37065	none	blat.proc3825162.chain_2261	1	STRG.29038.1,blat.proc3825162.chain_2260	2
scaffold_4	retained_intron	14648132	14648297	-	asmbl_43061	none	STRG.5090.3,Trinity_GG_2818_c0_g1_i4,blat.proc3825150.chain_1239	3	STRG.5090.1,STRG.5090.2,blat.proc3825150.chain_1236,blat.proc3825150.chain_1237,blat.proc3825150.chain_1238	5
scaffold_13	spliced_intron	4602251	4602712	-	asmbl_9650	none	STRG.15796.1	1	STRG.15796.3,Trinity_GG_8874_c0_g1_i1,blat.proc3825156.chain_662,blat.proc3825156.chain_667,blat.proc3825156.chain_670	5
scaffold_4	spliced_intron	13429478	13429669	+	asmbl_41795,asmbl_41796	none	STRG.4981.2,STRG.4981.3	2	STRG.4981.1	1
scaffold_5	retained_intron	10136208	10136286	+	asmbl_45659	none	Trinity_GG_20745_c0_g1_i2,blat.proc3825166.chain_2502	2	STRG.6311.1,blat.proc3825166.chain_2503,blat.proc3825166.chain_2504	3
scaffold_9	spliced_intron	11842724	11842821	-	asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55333	none	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3664	8	blat.proc3825152.chain_3663	1
scaffold_16	retained_intron	14510761	14510867	-	asmbl_17446	none	Trinity_GG_11122_c0_g1_i3,blat.proc3825158.chain_878	2	STRG.19830.1,blat.proc3825158.chain_874,blat.proc3825158.chain_875,blat.proc3825158.chain_877	4
scaffold_15	retained_intron	15355271	15355426	+	asmbl_15756,asmbl_15757,asmbl_15758,asmbl_15761,asmbl_15762	none	STRG.18922.1,STRG.18922.3,Trinity_GG_27686_c0_g1_i7,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3561,blat.proc3825172.chain_3564,blat.proc3825172.chain_3566	8	blat.proc3825172.chain_3563	1
scaffold_4	starts_in_intron	14405285	14405285	+	asmbl_41864	none	Trinity_GG_20111_c0_g1_i2,blat.proc3825166.chain_1440	2	STRG.5053.1,blat.proc3825166.chain_1439	2
scaffold_14	alt_donor	11292147	11292148	-	asmbl_13469	none	STRG.17462.2	1	STRG.17462.1,blat.proc3825156.chain_2265	2
scaffold_2	alternate_exon	20312718	20312782	+	asmbl_25321	none	STRG.2877.1,Trinity_GG_18936_c0_g1_i2,blat.proc3825164.chain_3115	3	STRG.2877.3,STRG.2877.4,blat.proc3825164.chain_3116	3
scaffold_12	alternate_exon	12305175	12305319	-	asmbl_8868	none	STRG.15132.1	1	STRG.15132.2	1
scaffold_16	alt_donor	1777012	1777013	+	asmbl_16086,asmbl_16087,asmbl_16088	none	STRG.19102.1,STRG.19102.2,STRG.19102.3,Trinity_GG_27779_c0_g1_i1,Trinity_GG_27779_c0_g1_i2,blat.proc3825174.chain_2,blat.proc3825174.chain_4	7	Trinity_GG_27779_c0_g1_i3,blat.proc3825174.chain_3	2
scaffold_11	ends_in_intron	3517337	3517337	+	asmbl_5444	none	Trinity_GG_24690_c0_g1_i3,blat.proc3825170.chain_1979	2	STRG.13485.1,STRG.13485.3,Trinity_GG_24690_c0_g1_i4,blat.proc3825170.chain_1977,blat.proc3825170.chain_1978	5
scaffold_21	alternate_exon	8527522	8527985	+	asmbl_28819	none	blat.proc3825176.chain_1467	1	STRG.24391.1,blat.proc3825176.chain_1459,blat.proc3825176.chain_1461,blat.proc3825176.chain_1465	4
scaffold_7	alternate_exon	18393951	18393999	-	asmbl_51476,asmbl_51477	none	Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2014,blat.proc3825152.chain_2017	4	STRG.9670.1,STRG.9670.2,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016,blat.proc3825152.chain_2021	13
scaffold_10	alternate_exon	1490983	1491397	-	asmbl_4065	none	Trinity_GG_6656_c0_g1_i6,blat.proc3825154.chain_516	2	STRG.12025.1,STRG.12025.3,blat.proc3825154.chain_513	3
scaffold_3	retained_exon	10629028	10629296	+	asmbl_40281,asmbl_40286,asmbl_40290	none	STRG.3513.2,STRG.3513.5,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687	4	STRG.3513.1,STRG.3513.4,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3684,blat.proc3825164.chain_3689	6
scaffold_19	starts_in_intron	1106396	1106396	-	asmbl_22028	none	STRG.21903.3	1	STRG.21903.1,STRG.21903.4,Trinity_GG_12207_c0_g2_i1,blat.proc3825158.chain_2735	4
scaffold_18	starts_in_intron	3796167	3796167	-	asmbl_19774	none	Trinity_GG_11882_c0_g1_i8,blat.proc3825158.chain_2175	2	STRG.21197.1,STRG.21197.3,blat.proc3825158.chain_2176,blat.proc3825158.chain_2178,blat.proc3825158.chain_2179	5
scaffold_3	retained_exon	12421536	12421583	+	asmbl_40399	none	STRG.3637.2,blat.proc3825166.chain_134	2	STRG.3637.1,blat.proc3825166.chain_131	2
scaffold_14	skipped_exon	9294804	9297509	-	asmbl_13370,asmbl_13377	none	STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2172	3	blat.proc3825156.chain_2166,blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	8
scaffold_6	alt_acceptor	1516490	1516491	+	asmbl_46714	none	STRG.7199.1,blat.proc3825166.chain_3394	2	STRG.7199.2	1
scaffold_1	spliced_intron	9297058	9297130	+	asmbl_1973,asmbl_1975,asmbl_1976	none	STRG.629.1,STRG.629.2,Trinity_GG_17708_c0_g1_i1,Trinity_GG_17708_c0_g1_i2,blat.proc3825164.chain_770,blat.proc3825164.chain_771	6	Trinity_GG_17708_c0_g1_i5,blat.proc3825164.chain_768	2
scaffold_2	spliced_intron	7214953	7215092	+	asmbl_24543,asmbl_24548,asmbl_24550	none	STRG.2054.1,STRG.2054.2,Trinity_GG_18495_c0_g1_i5,Trinity_GG_18495_c0_g1_i7,blat.proc3825164.chain_2268,blat.proc3825164.chain_2272	6	STRG.2054.3,Trinity_GG_18495_c0_g1_i8,blat.proc3825164.chain_2273	3
scaffold_39	ends_in_intron	33677	33677	-	asmbl_41069	none	STRG.30041.3,blat.proc3825162.chain_3204	2	STRG.30041.1,STRG.30041.2	2
scaffold_1	spliced_intron	5731015	5731118	-	asmbl_291,asmbl_292,asmbl_294	none	STRG.388.1,STRG.388.2,blat.proc3825148.chain_359,blat.proc3825148.chain_361	4	blat.proc3825148.chain_360	1
scaffold_6	starts_in_intron	8850867	8850867	-	asmbl_48590	none	STRG.7762.2,blat.proc3825152.chain_136	2	STRG.7762.1,blat.proc3825152.chain_137,blat.proc3825152.chain_138	3
scaffold_4	starts_in_intron	10448834	10448834	-	asmbl_42852	none	blat.proc3825150.chain_916	1	STRG.4796.1,STRG.4796.2,blat.proc3825150.chain_912,blat.proc3825150.chain_913,blat.proc3825150.chain_914	5
scaffold_8	alternate_exon	14570851	14571162	+	asmbl_53384	none	STRG.10543.4	1	STRG.10543.1,blat.proc3825168.chain_3106	2
scaffold_17	starts_in_intron	9031146	9031146	-	asmbl_18138,asmbl_18139	none	STRG.20532.2,blat.proc3825158.chain_1574,blat.proc3825158.chain_1576	3	STRG.20532.1,STRG.20532.3,STRG.20532.4,STRG.20532.5,STRG.20532.6	5
scaffold_17	alternate_exon	9031728	9038062	-	asmbl_18144	none	STRG.20532.3	1	STRG.20532.2,blat.proc3825158.chain_1576	2
scaffold_1	spliced_intron	14320893	14321243	+	asmbl_2380	none	STRG.1027.2,blat.proc3825164.chain_1224	2	blat.proc3825164.chain_1226	1
scaffold_23	spliced_intron	222857	223034	+	asmbl_31289	none	STRG.25539.2,blat.proc3825176.chain_2535	2	STRG.25539.1,blat.proc3825176.chain_2536	2
scaffold_7	alt_donor	2510015	2510016	-	asmbl_50758	none	Trinity_GG_4956_c0_g1_i3,blat.proc3825152.chain_1162	2	STRG.8686.1,Trinity_GG_4956_c0_g1_i2,blat.proc3825152.chain_1161	3
scaffold_4	alt_donor	18065529	18065530	-	asmbl_43344	none	STRG.5400.1,blat.proc3825150.chain_1579	2	STRG.5400.2,blat.proc3825150.chain_1578	2
scaffold_3	alt_acceptor	19407527	19407528	-	asmbl_39649	none	blat.proc3825150.chain_251	1	STRG.4086.5,blat.proc3825150.chain_252	2
scaffold_1	ends_in_intron	17675389	17675389	-	asmbl_1059	none	blat.proc3825148.chain_1232	1	STRG.1239.1,blat.proc3825148.chain_1234	2
scaffold_19	starts_in_intron	4792672	4792672	-	asmbl_22131	none	blat.proc3825158.chain_2888	1	STRG.22056.1,STRG.22056.2,STRG.22056.3,blat.proc3825158.chain_2885,blat.proc3825158.chain_2886,blat.proc3825158.chain_2887	6
scaffold_16	starts_in_intron	7217914	7217914	-	asmbl_17169	none	blat.proc3825158.chain_478	1	STRG.19399.1,STRG.19399.2,STRG.19399.3	3
scaffold_11	ends_in_intron	8719066	8719066	-	asmbl_6872	none	Trinity_GG_7765_c0_g1_i7	1	STRG.13902.1,blat.proc3825154.chain_2437,blat.proc3825154.chain_2439	3
scaffold_11	alt_donor	10001755	10001756	-	asmbl_6974	none	blat.proc3825154.chain_2553	1	STRG.14026.1,blat.proc3825154.chain_2554	2
scaffold_1	retained_intron	14333858	14334027	-	asmbl_889,asmbl_890	none	STRG.1032.2,STRG.1032.3,blat.proc3825148.chain_1021,blat.proc3825148.chain_1022	4	STRG.1032.1,blat.proc3825148.chain_1020	2
scaffold_13	spliced_intron	7217234	7217677	+	asmbl_11019,asmbl_11021,asmbl_11024,asmbl_11025,asmbl_11027	none	STRG.16019.1,blat.proc3825172.chain_809,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_814,blat.proc3825172.chain_816	6	blat.proc3825172.chain_810,blat.proc3825172.chain_811,blat.proc3825172.chain_815	3
scaffold_20	alt_acceptor	7144568	7144569	-	asmbl_25879	none	blat.proc3825176.chain_450	1	STRG.23280.1	1
scaffold_2	alt_acceptor	17454213	17454214	+	asmbl_25164	none	blat.proc3825164.chain_2923	1	STRG.2630.1	1
scaffold_4	alternate_exon	651237	654533	-	asmbl_42334	none	STRG.4137.1,Trinity_GG_2303_c0_g1_i2,Trinity_GG_2303_c1_g1_i1,blat.proc3825150.chain_367	4	STRG.4137.2,Trinity_GG_2303_c0_g1_i3,blat.proc3825150.chain_369	3
scaffold_1	spliced_intron	20338943	20339721	+	asmbl_2625	none	blat.proc3825164.chain_1591	1	STRG.1396.1,STRG.1396.3,STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	9
scaffold_26	skipped_exon	3672079	3673128	+	asmbl_34810,asmbl_34812	none	blat.proc3825178.chain_1106,blat.proc3825178.chain_1111	2	STRG.28048.1,blat.proc3825178.chain_1108,blat.proc3825178.chain_1110,blat.proc3825178.chain_1112	4
scaffold_20	alt_donor	7146619	7146620	-	asmbl_25880	none	STRG.23280.1	1	blat.proc3825176.chain_450	1
scaffold_10	alternate_exon	2672309	2672666	+	asmbl_2989	none	STRG.12089.2,blat.proc3825170.chain_827	2	STRG.12089.1	1
scaffold_20	alt_donor	5550144	5550145	-	asmbl_25772	none	STRG.23182.4,blat.proc3825160.chain_219	2	STRG.23182.1,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216,blat.proc3825160.chain_217	7
scaffold_5	retained_intron	4683007	4683535	-	asmbl_43984	none	STRG.5929.2,blat.proc3825150.chain_2076	2	STRG.5929.1,blat.proc3825150.chain_2075,blat.proc3825150.chain_2078,blat.proc3825150.chain_2081,blat.proc3825150.chain_2083,blat.proc3825150.chain_2085	6
scaffold_18	spliced_intron	8425824	8425992	-	asmbl_20010	none	STRG.21519.2,Trinity_GG_12027_c0_g1_i2,blat.proc3825158.chain_2415	3	STRG.21519.1,Trinity_GG_12027_c0_g1_i1,blat.proc3825158.chain_2414	3
scaffold_8	retained_intron	10040800	10041091	-	asmbl_52092	none	STRG.10261.1,blat.proc3825152.chain_2483	2	STRG.10261.2,blat.proc3825152.chain_2484	2
scaffold_11	spliced_intron	147614	147643	-	asmbl_6376	none	blat.proc3825154.chain_1832	1	STRG.13243.2	1
scaffold_15	alternate_exon	15174687	15179043	+	asmbl_15729,asmbl_15731,asmbl_15733,asmbl_15735,asmbl_15736,asmbl_15737,asmbl_15739,asmbl_15740,asmbl_15741	none	blat.proc3825172.chain_3519,blat.proc3825172.chain_3521,blat.proc3825172.chain_3524,blat.proc3825172.chain_3525,blat.proc3825172.chain_3528,blat.proc3825172.chain_3529,blat.proc3825172.chain_3530,blat.proc3825172.chain_3535,blat.proc3825172.chain_3536	9	blat.proc3825172.chain_3526,blat.proc3825172.chain_3527	2
scaffold_4	alt_acceptor	16139155	16139156	+	asmbl_41958	none	STRG.5185.2,blat.proc3825166.chain_1561	2	STRG.5185.1,blat.proc3825166.chain_1562	2
scaffold_12	alt_donor	14045216	14045217	-	asmbl_8961,asmbl_8963	none	STRG.15234.1,blat.proc3825156.chain_37	2	STRG.15234.2,blat.proc3825156.chain_39	2
scaffold_21	alternate_exon	1175749	1175860	-	asmbl_27388	none	STRG.23795.4,blat.proc3825160.chain_928	2	STRG.23795.2,Trinity_GG_13264_c0_g1_i3,blat.proc3825160.chain_929	3
scaffold_6	alternate_exon	2879158	2879223	-	asmbl_48178	none	STRG.7286.2,Trinity_GG_4069_c0_g1_i1,blat.proc3825150.chain_3399	3	STRG.7286.1	1
scaffold_9	retained_intron	11842283	11842383	-	asmbl_55332	none	blat.proc3825152.chain_3663	1	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3664	7
scaffold_20	spliced_intron	2079205	2079301	-	asmbl_25632	none	STRG.22944.1,Trinity_GG_12755_c0_g1_i3,blat.proc3825158.chain_3702,blat.proc3825158.chain_3704	4	blat.proc3825158.chain_3703	1
scaffold_19	retained_intron	4808048	4808289	-	asmbl_22134	none	blat.proc3825158.chain_2882	1	STRG.22061.1,blat.proc3825158.chain_2883	2
scaffold_17	alt_acceptor	7009176	7009177	-	asmbl_18018	none	STRG.20364.1	1	blat.proc3825158.chain_1423	1
scaffold_27	alternate_exon	2997038	2997281	+	asmbl_36150,asmbl_36151,asmbl_36152,asmbl_36153,asmbl_36154	none	STRG.28786.1,STRG.28786.2,STRG.28786.3,blat.proc3825178.chain_1904,blat.proc3825178.chain_1905,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	7	STRG.28786.5	1
scaffold_16	starts_in_intron	9143452	9143452	+	asmbl_16461	none	blat.proc3825174.chain_436	1	STRG.19514.1,blat.proc3825174.chain_435,blat.proc3825174.chain_438	3
scaffold_26	retained_intron	6350832	6351171	-	asmbl_35681	none	STRG.28335.4,blat.proc3825162.chain_1569	2	STRG.28335.2,STRG.28335.6,blat.proc3825162.chain_1570	3
scaffold_22	spliced_intron	4189098	4189298	+	asmbl_29968	none	STRG.24832.2,blat.proc3825176.chain_1925	2	STRG.24832.1,blat.proc3825176.chain_1926	2
scaffold_17	alt_acceptor	4675123	4675124	-	asmbl_17878	none	STRG.20200.1,blat.proc3825158.chain_1234	2	blat.proc3825158.chain_1233	1
scaffold_20	starts_in_intron	9533001	9533001	+	asmbl_26863	none	Trinity_GG_30285_c0_g1_i1,blat.proc3825176.chain_646	2	STRG.23496.1,STRG.23496.2,blat.proc3825176.chain_642,blat.proc3825176.chain_644	4
scaffold_16	retained_exon	13218005	13218082	+	asmbl_16651,asmbl_16657	none	STRG.19781.1,blat.proc3825174.chain_694,blat.proc3825174.chain_695	3	STRG.19781.2,STRG.19781.3,blat.proc3825174.chain_693	3
scaffold_11	starts_in_intron	17505221	17505221	-	asmbl_7275	none	blat.proc3825154.chain_2903	1	STRG.14408.1,Trinity_GG_8027_c0_g1_i1,blat.proc3825154.chain_2902	3
scaffold_12	alt_donor	9973055	9973056	-	asmbl_8705	none	STRG.14969.2	1	STRG.14969.1,STRG.14969.3,blat.proc3825154.chain_3477,blat.proc3825154.chain_3478	4
scaffold_13	ends_in_intron	5705353	5705353	-	asmbl_9711	none	Trinity_GG_8913_c3_g1_i1,blat.proc3825156.chain_736	2	STRG.15881.1,STRG.15881.2,blat.proc3825156.chain_726,blat.proc3825156.chain_729,blat.proc3825156.chain_733	5
scaffold_12	skipped_exon	9827222	9828926	+	asmbl_7881	none	STRG.14953.2,Trinity_GG_25567_c0_g1_i2,blat.proc3825170.chain_3500	3	STRG.14953.1,Trinity_GG_25567_c0_g1_i1,blat.proc3825170.chain_3499	3
scaffold_3	retained_intron	13800170	13800928	-	asmbl_39304	none	Trinity_GG_2036_c0_g1_i1,blat.proc3825148.chain_3594	2	STRG.3726.1,STRG.3726.2,Trinity_GG_2036_c0_g1_i4,blat.proc3825148.chain_3595,blat.proc3825148.chain_3596	5
scaffold_5	retained_exon	17192039	17192139	+	asmbl_46143	none	STRG.6891.1	1	STRG.6891.2	1
scaffold_4	starts_in_intron	6300650	6300650	+	asmbl_41391	none	Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918	2	STRG.4503.1,STRG.4503.2,Trinity_GG_19783_c0_g1_i1,Trinity_GG_19783_c0_g1_i3,blat.proc3825166.chain_920,blat.proc3825166.chain_922	6
scaffold_2	retained_exon	7404267	7404302	-	asmbl_23250,asmbl_23251,asmbl_23252,asmbl_23253,asmbl_23255	none	STRG.2065.1,STRG.2065.2,STRG.2065.3,STRG.2065.4,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i4,Trinity_GG_1101_c0_g1_i5,Trinity_GG_1101_c0_g1_i6,blat.proc3825148.chain_1981,blat.proc3825148.chain_1982,blat.proc3825148.chain_1983,blat.proc3825148.chain_1986	12	STRG.2065.5,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1985	3
scaffold_1	spliced_intron	13537007	13537217	-	asmbl_821,asmbl_822,asmbl_824	none	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_931,blat.proc3825148.chain_933	6	blat.proc3825148.chain_932	1
scaffold_7	alt_donor	12420893	12420894	+	asmbl_50261	none	STRG.9347.2,blat.proc3825168.chain_1863	2	STRG.9347.1,blat.proc3825168.chain_1864	2
scaffold_9	retained_intron	11837109	11837256	-	asmbl_55322,asmbl_55324	none	STRG.11501.3,blat.proc3825152.chain_3669	2	STRG.11501.1,STRG.11501.2,blat.proc3825152.chain_3671,blat.proc3825152.chain_3672	4
scaffold_3	alternate_exon	6183440	6184098	-	asmbl_38916,asmbl_38917	none	blat.proc3825148.chain_3121,blat.proc3825148.chain_3123	2	STRG.3266.1,STRG.3266.2,STRG.3266.4,blat.proc3825148.chain_3119,blat.proc3825148.chain_3120,blat.proc3825148.chain_3122,blat.proc3825148.chain_3124,blat.proc3825148.chain_3125	8
scaffold_13	starts_in_intron	1238201	1238201	+	asmbl_10552	none	Trinity_GG_25867_c0_g1_i1,blat.proc3825172.chain_308	2	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,STRG.15494.7,Trinity_GG_25867_c0_g1_i3,blat.proc3825172.chain_307,blat.proc3825172.chain_311	9
scaffold_10	retained_exon	5848545	5848715	-	asmbl_4389,asmbl_4390	none	STRG.12404.2,STRG.12404.3,blat.proc3825154.chain_885,blat.proc3825154.chain_886,blat.proc3825154.chain_887	5	STRG.12404.1	1
scaffold_19	alt_donor	13035594	13035595	-	asmbl_22586	none	STRG.22625.1,blat.proc3825158.chain_3450	2	STRG.22625.3,blat.proc3825158.chain_3449	2
scaffold_5	spliced_intron	10251374	10251506	-	asmbl_44331,asmbl_44334	none	STRG.6327.1,blat.proc3825150.chain_2456,blat.proc3825150.chain_2458	3	STRG.6327.2,blat.proc3825150.chain_2457,blat.proc3825150.chain_2459	3
scaffold_6	spliced_intron	569633	569861	-	asmbl_48040	none	STRG.7116.1,blat.proc3825150.chain_3217	2	STRG.7116.2,blat.proc3825150.chain_3216	2
scaffold_10	spliced_intron	5857610	5858338	-	asmbl_4399	none	blat.proc3825154.chain_983	1	Trinity_GG_6938_c0_g1_i1,Trinity_GG_6938_c0_g2_i1,blat.proc3825154.chain_981,blat.proc3825154.chain_984	4
scaffold_11	starts_in_intron	9198160	9198160	-	asmbl_6923	none	blat.proc3825154.chain_2476	1	STRG.13960.1,blat.proc3825154.chain_2477	2
scaffold_10	alt_acceptor	9375923	9375924	+	asmbl_3372	none	STRG.12676.1,blat.proc3825170.chain_1254	2	blat.proc3825170.chain_1253,blat.proc3825170.chain_1255	2
scaffold_23	starts_in_intron	9886212	9886212	+	asmbl_31805	none	Trinity_GG_31775_c0_g1_i4,blat.proc3825176.chain_3140	2	STRG.26189.1,blat.proc3825176.chain_3137,blat.proc3825176.chain_3139	3
scaffold_5	spliced_intron	18758085	18758276	-	asmbl_44874,asmbl_44876	none	STRG.7008.1,STRG.7008.2,blat.proc3825150.chain_3109	3	Trinity_GG_3898_c0_g1_i3,blat.proc3825150.chain_3107,blat.proc3825150.chain_3108	3
scaffold_1	retained_intron	18322459	18322534	+	asmbl_2547,asmbl_2549	none	STRG.1285.2,blat.proc3825164.chain_1356,blat.proc3825164.chain_1357	3	STRG.1285.1	1
scaffold_20	alternate_exon	238044	239418	-	asmbl_25470	none	STRG.22712.2	1	STRG.22712.3,STRG.22712.4	2
scaffold_3	alt_donor	16443933	16443934	+	asmbl_40625	none	STRG.3922.3	1	STRG.3922.1,STRG.3922.2,blat.proc3825166.chain_403	3
scaffold_23	starts_in_intron	1605696	1605696	+	asmbl_31348	none	blat.proc3825176.chain_2613	1	STRG.25640.1,blat.proc3825176.chain_2614,blat.proc3825176.chain_2615	3
scaffold_2	ends_in_intron	14267331	14267331	-	asmbl_23593	none	Trinity_GG_1342_c0_g1_i4,blat.proc3825148.chain_2423	2	STRG.2422.1,blat.proc3825148.chain_2425	2
scaffold_26	starts_in_intron	6371599	6371599	+	asmbl_35079	none	blat.proc3825178.chain_1418	1	STRG.28337.1,blat.proc3825178.chain_1420	2
scaffold_12	ends_in_intron	14034366	14034366	-	asmbl_8956	none	Trinity_GG_8541_c0_g1_i1	1	STRG.15226.1,Trinity_GG_8541_c0_g1_i3	2
scaffold_8	alt_donor	11854269	11854270	+	asmbl_53277,asmbl_53287	none	STRG.10390.2,blat.proc3825168.chain_3026	2	STRG.10390.3,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	4
scaffold_16	alt_donor	11767309	11767310	-	asmbl_17368	none	blat.proc3825158.chain_767	1	STRG.19697.1	1
scaffold_13	alt_acceptor	11586688	11586689	+	asmbl_11293,asmbl_11294	none	blat.proc3825172.chain_1028,blat.proc3825172.chain_1036	2	STRG.16316.3,STRG.16316.4,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030	4
scaffold_15	alternate_exon	7183429	7183837	-	asmbl_14278	none	STRG.18310.1,blat.proc3825156.chain_3040	2	STRG.18310.3,blat.proc3825156.chain_3042	2
scaffold_3	starts_in_intron	5751225	5751225	+	asmbl_40077	none	Trinity_GG_19095_c0_g1_i2,blat.proc3825164.chain_3414	2	STRG.3240.2,STRG.3240.3	2
scaffold_2	starts_in_intron	3903441	3903441	-	asmbl_23017	none	blat.proc3825148.chain_1786	1	STRG.1827.1,blat.proc3825148.chain_1787	2
scaffold_15	retained_intron	15906565	15906998	-	asmbl_14812,asmbl_14814	none	blat.proc3825158.chain_65,blat.proc3825158.chain_67	2	STRG.18975.1,blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_64	4
scaffold_15	ends_in_intron	1263239	1263239	+	asmbl_14996,asmbl_14999	none	STRG.17942.2,STRG.17942.3,blat.proc3825172.chain_2637	3	STRG.17942.1,blat.proc3825172.chain_2635,blat.proc3825172.chain_2636	3
scaffold_8	starts_in_intron	11742574	11742574	-	asmbl_52163	none	Trinity_GG_5730_c0_g2_i1,blat.proc3825152.chain_2545	2	STRG.10376.2,blat.proc3825152.chain_2543	2
scaffold_17	alt_donor	2631027	2631028	+	asmbl_18674	none	STRG.20060.1	1	STRG.20060.2,STRG.20060.3,STRG.20060.4,Trinity_GG_28292_c0_g1_i1,Trinity_GG_28292_c0_g1_i3,blat.proc3825174.chain_926,blat.proc3825174.chain_928,blat.proc3825174.chain_929	8
scaffold_14	spliced_intron	6412534	6412614	+	asmbl_12077	none	STRG.17089.1,blat.proc3825172.chain_1839	2	blat.proc3825172.chain_1840	1
scaffold_5	starts_in_intron	14262525	14262525	+	asmbl_45917,asmbl_45918	none	blat.proc3825166.chain_2791,blat.proc3825166.chain_2792	2	STRG.6638.1,STRG.6638.2,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2785,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	9
scaffold_12	starts_in_intron	13392327	13392327	-	asmbl_8949	none	blat.proc3825156.chain_7	1	STRG.15219.2,STRG.15219.3,STRG.15219.4,STRG.15219.5,blat.proc3825156.chain_4,blat.proc3825156.chain_5,blat.proc3825156.chain_6,blat.proc3825156.chain_8	8
scaffold_6	retained_exon	17522228	17522322	+	asmbl_47762,asmbl_47764	none	STRG.8455.1,STRG.8455.4,blat.proc3825168.chain_892	3	STRG.8455.3	1
scaffold_8	spliced_intron	6321681	6321793	-	asmbl_51879	none	STRG.10039.1	1	blat.proc3825152.chain_2323	1
scaffold_14	spliced_intron	5790758	5790843	-	asmbl_13092	none	STRG.17052.1,blat.proc3825156.chain_1796	2	Trinity_GG_9519_c1_g1_i2,blat.proc3825156.chain_1794	2
scaffold_4	retained_intron	5648812	5648953	-	asmbl_42622,asmbl_42629,asmbl_42631	none	Trinity_GG_2475_c1_g1_i2,blat.proc3825150.chain_671,blat.proc3825150.chain_673,blat.proc3825150.chain_674	4	blat.proc3825150.chain_670	1
scaffold_17	spliced_intron	680623	680807	-	asmbl_17642,asmbl_17644,asmbl_17645,asmbl_17646	none	STRG.19921.1,STRG.19921.2,blat.proc3825158.chain_959,blat.proc3825158.chain_961,blat.proc3825158.chain_962	5	Trinity_GG_11175_c0_g1_i3,blat.proc3825158.chain_960	2
scaffold_4	alt_acceptor	13076063	13076064	+	asmbl_41781	none	STRG.4947.2	1	STRG.4947.1,STRG.4947.3,STRG.4947.4,STRG.4947.5,blat.proc3825166.chain_1379,blat.proc3825166.chain_1380,blat.proc3825166.chain_1381,blat.proc3825166.chain_1382	8
scaffold_6	retained_intron	13917524	13917641	-	asmbl_48958,asmbl_48960	none	STRG.8139.4,blat.proc3825152.chain_568	2	STRG.8139.1,STRG.8139.2,STRG.8139.3,blat.proc3825152.chain_569,blat.proc3825152.chain_570	5
scaffold_11	alt_acceptor	176604	176605	+	asmbl_5263,asmbl_5268,asmbl_5269	none	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	4	Trinity_GG_24602_c0_g1_i3,blat.proc3825170.chain_1812	2
scaffold_6	alt_donor	12479611	12479612	+	asmbl_47397,asmbl_47398,asmbl_47402	none	STRG.8006.2,STRG.8006.3,blat.proc3825168.chain_474,blat.proc3825168.chain_475	4	STRG.8006.4,blat.proc3825168.chain_472	2
scaffold_19	skipped_exon	13195164	13195671	-	asmbl_22610,asmbl_22619,asmbl_22620,asmbl_22621,asmbl_22622,asmbl_22623	none	STRG.22653.1,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3436	7	Trinity_GG_12588_c1_g1_i6,blat.proc3825158.chain_3431	2
scaffold_22	retained_intron	736233	736408	-	asmbl_29122	none	STRG.24726.2,blat.proc3825160.chain_1921	2	STRG.24726.1,blat.proc3825160.chain_1920	2
scaffold_12	retained_intron	12287220	12287724	-	asmbl_8855,asmbl_8856,asmbl_8858	none	STRG.15130.3,STRG.15130.4,STRG.15130.5,Trinity_GG_8430_c0_g1_i1,blat.proc3825154.chain_3606	5	STRG.15130.1,STRG.15130.2,blat.proc3825154.chain_3607	3
scaffold_12	alt_donor	7173495	7173496	+	asmbl_7721,asmbl_7722,asmbl_7724	none	STRG.14794.1,STRG.14794.2,blat.proc3825170.chain_3303,blat.proc3825170.chain_3305	4	blat.proc3825170.chain_3304	1
scaffold_3	spliced_intron	5159772	5159888	-	asmbl_38836	none	STRG.3215.1	1	Trinity_GG_1751_c0_g2_i1,blat.proc3825148.chain_3084	2
scaffold_13	spliced_intron	8952103	8952193	-	asmbl_10002,asmbl_10003	none	STRG.16166.1,STRG.16166.2,blat.proc3825156.chain_1078,blat.proc3825156.chain_1079	4	blat.proc3825156.chain_1077	1
scaffold_19	retained_intron	10121648	10121867	+	asmbl_21620	none	Trinity_GG_29687_c2_g1_i1,blat.proc3825174.chain_3395	2	STRG.22395.1,blat.proc3825174.chain_3394	2
scaffold_3	starts_in_intron	11453537	11453537	-	asmbl_39168	none	STRG.3580.1	1	STRG.3580.2,blat.proc3825148.chain_3376,blat.proc3825148.chain_3377,blat.proc3825148.chain_3378	4
scaffold_16	skipped_exon	8711335	8712234	-	asmbl_17252,asmbl_17253	none	STRG.19504.1,STRG.19504.3,blat.proc3825158.chain_624,blat.proc3825158.chain_625	4	STRG.19504.2,blat.proc3825158.chain_626,blat.proc3825158.chain_627	3
scaffold_52	spliced_intron	6286	6560	+	asmbl_46528,asmbl_46529	none	STRG.30059.1,STRG.30059.3,Trinity_GG_33948_c0_g1_i4,Trinity_GG_33948_c0_g1_i5,blat.proc3825178.chain_3179,blat.proc3825178.chain_3184	6	STRG.30059.2,Trinity_GG_33948_c0_g1_i1,Trinity_GG_33948_c0_g1_i2,Trinity_GG_33948_c0_g1_i3,blat.proc3825178.chain_3181,blat.proc3825178.chain_3182,blat.proc3825178.chain_3183	7
scaffold_24	starts_in_intron	6801014	6801014	-	asmbl_32982,asmbl_32984	none	blat.proc3825162.chain_90,blat.proc3825162.chain_93	2	STRG.26730.1,STRG.26730.2,STRG.26730.3,blat.proc3825162.chain_89,blat.proc3825162.chain_91	5
scaffold_26	starts_in_intron	5493529	5493529	+	asmbl_35005	none	Trinity_GG_32922_c0_g1_i2,blat.proc3825178.chain_1337	2	STRG.28253.1,blat.proc3825178.chain_1336	2
scaffold_2	alternate_exon	8057121	8057391	-	asmbl_23302	none	STRG.2094.3,Trinity_GG_1165_c1_g1_i1,blat.proc3825148.chain_2122	3	STRG.2094.1,STRG.2094.2,blat.proc3825148.chain_2117,blat.proc3825148.chain_2119,blat.proc3825148.chain_2121	5
scaffold_9	retained_intron	11815085	11815410	+	asmbl_54381	none	Trinity_GG_23726_c0_g1_i4,blat.proc3825170.chain_314	2	STRG.11498.1,blat.proc3825170.chain_315,blat.proc3825170.chain_316	3
scaffold_1	alternate_exon	9961517	9961757	-	asmbl_569	none	STRG.663.2,blat.proc3825148.chain_664	2	STRG.663.1,blat.proc3825148.chain_663	2
scaffold_7	spliced_intron	13204822	13204912	+	asmbl_50314,asmbl_50316,asmbl_50317	none	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1973,blat.proc3825168.chain_1975	4	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1972,blat.proc3825168.chain_1974	3
scaffold_9	starts_in_intron	9655551	9655551	+	asmbl_54225,asmbl_54226	none	blat.proc3825170.chain_156,blat.proc3825170.chain_157	2	STRG.11344.1,STRG.11344.2,STRG.11344.3,blat.proc3825170.chain_155,blat.proc3825170.chain_158,blat.proc3825170.chain_160,blat.proc3825170.chain_163	7
scaffold_10	spliced_intron	5823736	5824113	+	asmbl_3208	none	STRG.12406.2,Trinity_GG_24196_c0_g1_i4,blat.proc3825170.chain_1100	3	STRG.12406.1,blat.proc3825170.chain_1102	2
scaffold_1	skipped_exon	12545033	12545421	-	asmbl_730,asmbl_732	none	STRG.870.1,STRG.870.2,blat.proc3825148.chain_801	3	blat.proc3825148.chain_800	1
scaffold_17	alt_acceptor	1292002	1292003	-	asmbl_17679,asmbl_17680	none	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_973,blat.proc3825158.chain_975	4	blat.proc3825158.chain_972	1
scaffold_8	retained_intron	12193942	12194153	-	asmbl_52185	none	blat.proc3825152.chain_2625	1	STRG.10405.1,blat.proc3825152.chain_2626	2
scaffold_2	retained_intron	15271311	15271411	+	asmbl_25015	none	blat.proc3825164.chain_2622	1	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	8
scaffold_12	alternate_exon	4215000	4215057	+	asmbl_7590	none	STRG.14601.4,blat.proc3825170.chain_3168	2	STRG.14601.2,STRG.14601.3	2
scaffold_26	alternate_exon	3981192	3982890	-	asmbl_35523	none	STRG.28088.1,blat.proc3825162.chain_1387	2	STRG.28088.2,Trinity_GG_15750_c1_g1_i1,blat.proc3825162.chain_1388	3
scaffold_5	spliced_intron	13316252	13316346	-	asmbl_44537,asmbl_44539,asmbl_44542	none	STRG.6579.1,blat.proc3825150.chain_2763,blat.proc3825150.chain_2766	3	blat.proc3825150.chain_2764	1
scaffold_23	alt_acceptor	5563906	5563907	+	asmbl_31573	none	STRG.25928.1,blat.proc3825176.chain_2871	2	STRG.25928.2	1
scaffold_28	alternate_exon	2198534	2198599	+	asmbl_37344	none	Trinity_GG_33584_c1_g1_i1,blat.proc3825178.chain_2545	2	STRG.29390.3	1
scaffold_11	alt_donor	10001740	10001741	-	asmbl_6973	none	STRG.14026.1,blat.proc3825154.chain_2554	2	blat.proc3825154.chain_2553	1
scaffold_13	alternate_exon	7506711	7508236	-	asmbl_9885,asmbl_9886,asmbl_9891	none	STRG.16047.1,STRG.16047.3,blat.proc3825156.chain_899,blat.proc3825156.chain_903,blat.proc3825156.chain_905	5	STRG.16047.2,blat.proc3825156.chain_901,blat.proc3825156.chain_908	3
scaffold_5	alt_donor	10541432	10541433	+	asmbl_45681	none	STRG.6343.2,Trinity_GG_20774_c0_g1_i1,blat.proc3825166.chain_2558	3	STRG.6343.1	1
scaffold_8	spliced_intron	6309352	6309452	+	asmbl_52959,asmbl_52960,asmbl_52963	none	STRG.10033.1,Trinity_GG_22907_c0_g1_i9,blat.proc3825168.chain_2626,blat.proc3825168.chain_2627,blat.proc3825168.chain_2629	5	blat.proc3825168.chain_2624	1
scaffold_7	spliced_intron	8659761	8660031	-	asmbl_51024,asmbl_51025	none	STRG.9099.1,blat.proc3825152.chain_1496,blat.proc3825152.chain_1499	3	blat.proc3825152.chain_1497,blat.proc3825152.chain_1498	2
scaffold_11	retained_intron	13035297	13036295	-	asmbl_7115	none	STRG.14179.2,blat.proc3825154.chain_2758	2	STRG.14179.1,blat.proc3825154.chain_2755,blat.proc3825154.chain_2757	3
scaffold_28	skipped_exon	8412619	8414892	+	asmbl_37746	none	Trinity_GG_33871_c0_g1_i1,blat.proc3825178.chain_3063	2	STRG.29918.1,Trinity_GG_33871_c0_g1_i2,blat.proc3825178.chain_3062	3
scaffold_1	spliced_intron	855214	855406	+	asmbl_1427,asmbl_1428,asmbl_1429	none	STRG.43.1,STRG.43.4,Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142	4	STRG.43.2,STRG.43.3,Trinity_GG_17353_c0_g1_i1,blat.proc3825164.chain_147	4
scaffold_6	alt_acceptor	18837597	18837598	+	asmbl_47852,asmbl_47853,asmbl_47856,asmbl_47857,asmbl_47858,asmbl_47860	none	STRG.8556.1,STRG.8556.2,STRG.8556.3,STRG.8556.4,STRG.8556.5,Trinity_GG_21987_c0_g1_i5,blat.proc3825168.chain_959,blat.proc3825168.chain_962,blat.proc3825168.chain_963	9	STRG.8556.6,blat.proc3825168.chain_960	2
scaffold_21	retained_intron	3015237	3015391	+	asmbl_28436	none	blat.proc3825176.chain_1104	1	STRG.23928.1,blat.proc3825176.chain_1106	2
scaffold_1	spliced_intron	14522290	14522424	-	asmbl_930,asmbl_932	none	STRG.1050.2,STRG.1050.4,blat.proc3825148.chain_1051	3	Trinity_GG_552_c0_g1_i2,blat.proc3825148.chain_1054	2
scaffold_5	alt_acceptor	16206596	16206597	+	asmbl_46059,asmbl_46061	none	STRG.6809.1,blat.proc3825166.chain_2951,blat.proc3825166.chain_2953,blat.proc3825166.chain_2954	4	STRG.6809.2	1
scaffold_9	ends_in_intron	11598251	11598251	-	asmbl_55301	none	Trinity_GG_6298_c0_g1_i3,blat.proc3825152.chain_3627	2	STRG.11477.1,STRG.11477.2,blat.proc3825152.chain_3628,blat.proc3825152.chain_3629	4
scaffold_10	retained_intron	3129132	3129956	-	asmbl_4166	none	STRG.12138.2,Trinity_GG_6767_c0_g1_i1,Trinity_GG_6767_c0_g1_i4,blat.proc3825154.chain_699,blat.proc3825154.chain_700	5	STRG.12138.3	1
scaffold_27	alt_acceptor	3281161	3281162	-	asmbl_36905	none	STRG.28808.5	1	STRG.28808.2	1
scaffold_5	alternate_exon	15706367	15707705	+	asmbl_46010	none	STRG.6765.2	1	STRG.6765.3	1
scaffold_4	spliced_intron	13075747	13075881	+	asmbl_41780	none	STRG.4947.4	1	STRG.4947.1,STRG.4947.2,STRG.4947.3,STRG.4947.5,blat.proc3825166.chain_1379,blat.proc3825166.chain_1380,blat.proc3825166.chain_1381,blat.proc3825166.chain_1382	8
scaffold_6	spliced_intron	6869228	6869357	+	asmbl_47012	none	STRG.7592.2,blat.proc3825166.chain_3679	2	STRG.7592.1,STRG.7592.3,blat.proc3825166.chain_3678,blat.proc3825166.chain_3680	4
scaffold_14	alt_acceptor	9273608	9273609	-	asmbl_13364	none	STRG.17338.2	1	STRG.17338.1,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204	5
scaffold_5	retained_intron	10303566	10303683	-	asmbl_44345	none	blat.proc3825150.chain_2556	1	STRG.6333.1,blat.proc3825150.chain_2553,blat.proc3825150.chain_2554,blat.proc3825150.chain_2555	4
scaffold_1	spliced_intron	9297505	9297576	+	asmbl_1973,asmbl_1974,asmbl_1975,asmbl_1976	none	STRG.629.1,STRG.629.2,Trinity_GG_17708_c0_g1_i1,Trinity_GG_17708_c0_g1_i2,Trinity_GG_17708_c0_g1_i5,blat.proc3825164.chain_768,blat.proc3825164.chain_770,blat.proc3825164.chain_771	8	blat.proc3825164.chain_769	1
scaffold_18	alt_acceptor	12935548	12935549	+	asmbl_20981	none	STRG.21740.1	1	STRG.21740.2,STRG.21740.3	2
scaffold_21	starts_in_intron	4100950	4100950	+	asmbl_28503	none	STRG.24000.5	1	STRG.24000.1	1
scaffold_23	spliced_intron	1458422	1458455	+	asmbl_31327	none	blat.proc3825176.chain_2580	1	STRG.25621.1,blat.proc3825176.chain_2579	2
scaffold_4	starts_in_intron	6281678	6281678	-	asmbl_42674	none	Trinity_GG_2543_c0_g1_i3	1	STRG.4498.1,STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i1,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_773,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778,blat.proc3825150.chain_779,blat.proc3825150.chain_780	16
scaffold_3	retained_intron	13419144	13419481	-	asmbl_39259,asmbl_39260,asmbl_39262,asmbl_39263	none	STRG.3693.1,STRG.3693.2,blat.proc3825148.chain_3583,blat.proc3825148.chain_3584,blat.proc3825148.chain_3585,blat.proc3825148.chain_3590	6	STRG.3693.4	1
scaffold_7	starts_in_intron	7481830	7481830	+	asmbl_49931	none	blat.proc3825168.chain_1506	1	STRG.9003.1,blat.proc3825168.chain_1505	2
scaffold_20	starts_in_intron	2389539	2389539	-	asmbl_25642	none	STRG.22971.1,blat.proc3825160.chain_60	2	STRG.22971.2,STRG.22971.3,blat.proc3825160.chain_61	3
scaffold_16	retained_intron	14552936	14553116	+	asmbl_16687,asmbl_16688,asmbl_16691	none	STRG.19851.3,Trinity_GG_28180_c0_g1_i1,Trinity_GG_28180_c0_g1_i6,blat.proc3825174.chain_731,blat.proc3825174.chain_732	5	Trinity_GG_28180_c0_g1_i4,blat.proc3825174.chain_733	2
scaffold_20	starts_in_intron	12109267	12109267	+	asmbl_27114,asmbl_27117	none	STRG.23711.2,Trinity_GG_30409_c0_g1_i1,blat.proc3825176.chain_860	3	STRG.23711.1,blat.proc3825176.chain_857,blat.proc3825176.chain_859	3
scaffold_21	retained_intron	6617614	6617692	+	asmbl_28672,asmbl_28678	none	Trinity_GG_30735_c0_g2_i3,blat.proc3825176.chain_1435,blat.proc3825176.chain_1437	3	STRG.24188.1,STRG.24188.2,Trinity_GG_30735_c0_g2_i2,blat.proc3825176.chain_1434,blat.proc3825176.chain_1436	5
scaffold_14	alt_acceptor	1111351	1111352	+	asmbl_11808	none	STRG.16770.3	1	STRG.16770.2,blat.proc3825172.chain_1531	2
scaffold_15	retained_intron	15523267	15523823	-	asmbl_14791	none	STRG.18941.1,Trinity_GG_10642_c0_g1_i2,blat.proc3825158.chain_75	3	Trinity_GG_10642_c0_g1_i1,blat.proc3825158.chain_74	2
scaffold_1	starts_in_intron	6573013	6573013	-	asmbl_371	none	blat.proc3825148.chain_339	1	STRG.448.1,blat.proc3825148.chain_338	2
scaffold_5	alt_acceptor	9085016	9085017	+	asmbl_45607	none	blat.proc3825166.chain_2477	1	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	5
scaffold_18	alt_acceptor	12935460	12935461	+	asmbl_20980	none	STRG.21740.2	1	STRG.21740.1,STRG.21740.3	2
scaffold_24	spliced_intron	9934311	9934385	+	asmbl_32537	none	STRG.26966.1,blat.proc3825178.chain_100	2	blat.proc3825178.chain_99	1
scaffold_11	skipped_exon	9699517	9700110	-	asmbl_6952	none	STRG.13992.3,Trinity_GG_7828_c1_g1_i3,blat.proc3825154.chain_2538	3	STRG.13992.2,Trinity_GG_7828_c1_g1_i1,blat.proc3825154.chain_2535	3
scaffold_21	spliced_intron	7600965	7601122	+	asmbl_28753	none	STRG.24297.2,blat.proc3825176.chain_1516	2	STRG.24297.3,blat.proc3825176.chain_1517	2
scaffold_26	alternate_exon	2955125	2960899	-	asmbl_35462	none	STRG.27989.2,blat.proc3825162.chain_1297	2	STRG.27989.5,Trinity_GG_15696_c1_g1_i1,blat.proc3825162.chain_1302	3
scaffold_17	spliced_intron	5137331	5138143	-	asmbl_17921	none	STRG.20247.2,blat.proc3825158.chain_1307	2	STRG.20247.4,blat.proc3825158.chain_1308	2
scaffold_18	skipped_exon	9633911	9635957	-	asmbl_20063	none	STRG.21576.1,blat.proc3825158.chain_2478	2	blat.proc3825158.chain_2480	1
scaffold_3	starts_in_intron	1482720	1482720	+	asmbl_39854	none	Trinity_GG_18969_c0_g1_i1,blat.proc3825164.chain_3171	2	STRG.2969.1	1
scaffold_7	ends_in_intron	17810768	17810768	+	asmbl_50502	none	blat.proc3825168.chain_2132	1	STRG.9628.1,blat.proc3825168.chain_2133,blat.proc3825168.chain_2134,blat.proc3825168.chain_2135,blat.proc3825168.chain_2136	5
scaffold_3	retained_intron	14187141	14189176	-	asmbl_39327,asmbl_39331,asmbl_39333	none	STRG.3761.1,STRG.3761.3,STRG.3761.5,Trinity_GG_2073_c0_g1_i5,blat.proc3825148.chain_3667	5	STRG.3761.4	1
scaffold_3	alt_donor	17364899	17364900	-	asmbl_39552	none	blat.proc3825150.chain_179	1	STRG.3971.1,STRG.3971.2,STRG.3971.4,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_181,blat.proc3825150.chain_182,blat.proc3825150.chain_184,blat.proc3825150.chain_185	9
scaffold_9	starts_in_intron	4812673	4812673	-	asmbl_54973	none	blat.proc3825152.chain_3298	1	STRG.11051.1,blat.proc3825152.chain_3297,blat.proc3825152.chain_3299	3
scaffold_13	alt_donor	3699690	3699691	+	asmbl_10723	none	STRG.15685.1,Trinity_GG_25876_c0_g1_i1,blat.proc3825172.chain_336	3	STRG.15685.2,STRG.15685.3	2
scaffold_22	retained_intron	647867	648211	+	asmbl_29876	none	STRG.24715.2,Trinity_GG_30976_c0_g1_i1,blat.proc3825176.chain_1842	3	STRG.24715.1,Trinity_GG_30976_c0_g1_i3,blat.proc3825176.chain_1841	3
scaffold_21	alternate_exon	5139788	5141678	-	asmbl_27611	none	STRG.24059.4	1	STRG.24059.2,STRG.24059.3	2
scaffold_13	alternate_exon	6620165	6620215	-	asmbl_9807	none	STRG.15958.1	1	STRG.15958.2,Trinity_GG_8985_c0_g1_i3,blat.proc3825156.chain_864	3
scaffold_14	alternate_exon	209954	210056	-	asmbl_12799	none	Trinity_GG_9359_c0_g2_i3,blat.proc3825156.chain_1537	2	STRG.16713.2,Trinity_GG_9359_c0_g2_i5,blat.proc3825156.chain_1538	3
scaffold_12	alt_donor	14283975	14283976	+	asmbl_8089	none	STRG.15266.1,blat.proc3825172.chain_16	2	blat.proc3825172.chain_15	1
scaffold_12	starts_in_intron	11357451	11357451	-	asmbl_8806	none	blat.proc3825154.chain_3564	1	STRG.15078.1,blat.proc3825154.chain_3562,blat.proc3825154.chain_3563	3
scaffold_8	retained_intron	4393829	4393852	+	asmbl_52846	none	STRG.9926.1,Trinity_GG_22814_c1_g1_i2,Trinity_GG_22814_c1_g1_i3,blat.proc3825168.chain_2440	4	STRG.9926.2	1
scaffold_10	spliced_intron	5390028	5390782	+	asmbl_3167	none	STRG.12365.1,blat.proc3825170.chain_1033	2	Trinity_GG_24154_c0_g1_i2,blat.proc3825170.chain_1034	2
scaffold_5	alternate_exon	18560521	18560555	+	asmbl_46271	none	Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3153	2	STRG.6987.6,Trinity_GG_21132_c0_g1_i4	2
scaffold_23	alt_acceptor	10212337	10212338	+	asmbl_31842	none	STRG.26229.3,blat.proc3825176.chain_3231	2	STRG.26229.1,STRG.26229.2,blat.proc3825176.chain_3227,blat.proc3825176.chain_3229,blat.proc3825176.chain_3230	5
scaffold_3	skipped_exon	14513809	14514499	-	asmbl_39386	none	STRG.3791.2	1	STRG.3791.1,STRG.3791.3,Trinity_GG_2101_c0_g1_i1,blat.proc3825148.chain_3738	4
scaffold_6	alternate_exon	2878887	2878940	-	asmbl_48179	none	STRG.7286.1	1	STRG.7286.2,Trinity_GG_4069_c0_g1_i1,blat.proc3825150.chain_3399	3
scaffold_3	alt_acceptor	14479787	14479788	+	asmbl_40527	none	STRG.3789.2,Trinity_GG_19439_c0_g1_i1,blat.proc3825166.chain_287,blat.proc3825166.chain_289	4	STRG.3789.1,blat.proc3825166.chain_286	2
scaffold_19	spliced_intron	12686175	12686347	-	asmbl_22527,asmbl_22528,asmbl_22530	none	STRG.22592.1,STRG.22592.2,blat.proc3825158.chain_3367,blat.proc3825158.chain_3368,blat.proc3825158.chain_3369	5	blat.proc3825158.chain_3366	1
scaffold_6	alternate_exon	3545644	3548176	+	asmbl_46850	none	STRG.7363.1,Trinity_GG_21360_c0_g1_i1,blat.proc3825166.chain_3588	3	STRG.7363.2,Trinity_GG_21360_c0_g1_i2,blat.proc3825166.chain_3587	3
scaffold_10	retained_intron	976769	976863	-	asmbl_4022	none	Trinity_GG_6637_c0_g1_i9	1	STRG.11979.1,STRG.11979.2,Trinity_GG_6637_c0_g1_i3,Trinity_GG_6637_c0_g1_i5	4
scaffold_21	alt_acceptor	8123091	8123092	+	asmbl_28788	none	STRG.24347.1,blat.proc3825176.chain_1541	2	STRG.24347.2	1
scaffold_8	alt_donor	9401157	9401158	+	asmbl_53076	none	STRG.10204.1,Trinity_GG_22984_c0_g1_i1,blat.proc3825168.chain_2758	3	STRG.10204.2,Trinity_GG_22984_c0_g1_i2,blat.proc3825168.chain_2757	3
scaffold_23	alt_acceptor	7513092	7513093	-	asmbl_31032	none	STRG.26071.2,blat.proc3825160.chain_3241	2	STRG.26071.1	1
scaffold_24	ends_in_intron	8715368	8715368	-	asmbl_33093	none	Trinity_GG_14996_c0_g1_i2,blat.proc3825162.chain_166	2	STRG.26884.1,blat.proc3825162.chain_167	2
scaffold_5	alternate_exon	5738079	5739398	+	asmbl_45367	none	STRG.5992.1	1	STRG.5992.3,blat.proc3825166.chain_2133	2
scaffold_27	alt_acceptor	4765476	4765477	-	asmbl_36964	none	STRG.28915.1,blat.proc3825162.chain_2094	2	STRG.28915.2	1
scaffold_20	retained_intron	7185087	7185227	-	asmbl_25883	none	Trinity_GG_12999_c0_g1_i1,blat.proc3825160.chain_385	2	blat.proc3825160.chain_383	1
scaffold_15	alt_acceptor	2491469	2491470	+	asmbl_15057	none	STRG.18031.1,blat.proc3825172.chain_2721	2	STRG.18031.2	1
scaffold_14	retained_intron	2374520	2375890	-	asmbl_12936,asmbl_12940	none	STRG.16854.1,Trinity_GG_9462_c0_g1_i7	2	STRG.16854.5,STRG.16854.7	2
scaffold_28	alt_donor	2117260	2117261	+	asmbl_37325	none	STRG.29369.1,blat.proc3825178.chain_2573	2	STRG.29369.2	1
scaffold_14	alt_acceptor	9600478	9600479	+	asmbl_12293	none	STRG.17351.2	1	STRG.17351.1,blat.proc3825172.chain_2133	2
scaffold_7	ends_in_intron	12450847	12450847	-	asmbl_51228	none	Trinity_GG_5252_c0_g1_i7,blat.proc3825152.chain_1692	2	STRG.9354.1,STRG.9354.2,STRG.9354.3,Trinity_GG_5252_c0_g1_i10,Trinity_GG_5252_c0_g1_i20,blat.proc3825152.chain_1688	6
scaffold_6	spliced_intron	6869240	6869357	+	asmbl_47015	none	blat.proc3825166.chain_3681	1	STRG.7592.1,STRG.7592.3,blat.proc3825166.chain_3678,blat.proc3825166.chain_3680	4
scaffold_10	alt_acceptor	9102060	9102061	-	asmbl_4680	none	STRG.12661.2,blat.proc3825154.chain_1195	2	STRG.12661.1	1
scaffold_2	alt_donor	6534309	6534310	+	asmbl_24481	none	STRG.2015.2,Trinity_GG_18445_c0_g1_i2,blat.proc3825164.chain_2135	3	STRG.2015.1,Trinity_GG_18445_c0_g1_i3,blat.proc3825164.chain_2136	3
scaffold_6	ends_in_intron	14388226	14388226	+	asmbl_47602	none	Trinity_GG_21819_c0_g1_i2,blat.proc3825168.chain_685	2	STRG.8200.1,blat.proc3825168.chain_686	2
scaffold_2	spliced_intron	7816023	7816120	-	asmbl_23277	none	STRG.2079.1,Trinity_GG_1148_c0_g1_i2,blat.proc3825148.chain_2086	3	Trinity_GG_1148_c0_g1_i1,blat.proc3825148.chain_2088	2
scaffold_28	alternate_exon	7777202	7777242	-	asmbl_38415	none	STRG.29851.2,blat.proc3825162.chain_3007	2	STRG.29851.1,blat.proc3825162.chain_3008	2
scaffold_1	alt_acceptor	3436528	3436529	+	asmbl_1594	none	STRG.212.1,Trinity_GG_17470_c0_g1_i2,blat.proc3825164.chain_336	3	STRG.212.2,Trinity_GG_17470_c0_g1_i1,blat.proc3825164.chain_335	3
scaffold_7	starts_in_intron	4393107	4393107	+	asmbl_49732	none	Trinity_GG_22151_c0_g1_i2,blat.proc3825168.chain_1269	2	Trinity_GG_22151_c0_g1_i1,Trinity_GG_22151_c0_g1_i3,blat.proc3825168.chain_1270,blat.proc3825168.chain_1271	4
scaffold_27	alt_acceptor	2548785	2548786	+	asmbl_36092	none	STRG.28732.1	1	STRG.28732.3	1
scaffold_13	retained_intron	15814218	15814405	+	asmbl_11542	none	blat.proc3825172.chain_1359	1	STRG.16625.1	1
scaffold_14	starts_in_intron	15911111	15911111	-	asmbl_13761	none	STRG.17833.1,blat.proc3825156.chain_2649	2	STRG.17833.2,blat.proc3825156.chain_2645	2
scaffold_9	retained_intron	6902827	6902922	-	asmbl_55089,asmbl_55090,asmbl_55091,asmbl_55092	none	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3389,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3394	5	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	4
scaffold_3	alternate_exon	6188092	6189687	-	asmbl_38911	none	STRG.3266.4	1	STRG.3266.1,blat.proc3825148.chain_3119,blat.proc3825148.chain_3121	3
scaffold_1	alt_acceptor	3618424	3618425	+	asmbl_1613,asmbl_1616	none	STRG.229.1,blat.proc3825164.chain_355,blat.proc3825164.chain_357	3	STRG.229.2,blat.proc3825164.chain_354	2
scaffold_13	retained_intron	517905	519724	+	asmbl_10487	none	STRG.15449.1,blat.proc3825172.chain_188	2	STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_184	5
scaffold_9	ends_in_intron	5665902	5665902	+	asmbl_54063	none	blat.proc3825168.chain_3685	1	STRG.11140.1,blat.proc3825168.chain_3686	2
scaffold_14	alternate_exon	6774876	6775029	-	asmbl_13157	none	STRG.17120.1,blat.proc3825156.chain_1932	2	STRG.17120.2,blat.proc3825156.chain_1934	2
scaffold_15	spliced_intron	15355010	15355115	+	asmbl_15758,asmbl_15760,asmbl_15762	none	STRG.18922.3,Trinity_GG_27686_c0_g1_i7,blat.proc3825172.chain_3561,blat.proc3825172.chain_3563	4	STRG.18922.1,Trinity_GG_27686_c0_g1_i4,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3564,blat.proc3825172.chain_3565	6
scaffold_7	spliced_intron	1233710	1233915	+	asmbl_49603	none	STRG.8637.4	1	Trinity_GG_22033_c0_g1_i16,Trinity_GG_22033_c0_g1_i17,blat.proc3825168.chain_1066,blat.proc3825168.chain_1080	4
scaffold_10	retained_intron	7827883	7827959	-	asmbl_4563	none	Trinity_GG_6983_c0_g1_i1,blat.proc3825154.chain_1085	2	STRG.12573.1,blat.proc3825154.chain_1084	2
scaffold_1	alt_acceptor	4615282	4615283	+	asmbl_1683,asmbl_1684,asmbl_1686	none	STRG.295.1,STRG.295.2,STRG.295.3,blat.proc3825164.chain_449	4	STRG.295.4	1
scaffold_18	alternate_exon	3032775	3032807	-	asmbl_19743	none	STRG.21147.2	1	STRG.21147.1,blat.proc3825158.chain_2116	2
scaffold_17	retained_intron	1291368	1292422	-	asmbl_17682,asmbl_17687	none	STRG.19964.6,blat.proc3825158.chain_970	2	blat.proc3825158.chain_972	1
scaffold_13	alternate_exon	2658426	2658669	-	asmbl_9474	none	blat.proc3825156.chain_385	1	blat.proc3825156.chain_384	1
scaffold_12	alt_donor	15426942	15426943	-	asmbl_9078	none	STRG.15346.1,blat.proc3825156.chain_194	2	STRG.15346.2,blat.proc3825156.chain_196	2
scaffold_19	alternate_exon	1738694	1738743	-	asmbl_22046	none	STRG.21930.2	1	STRG.21930.1	1
scaffold_3	retained_intron	2269178	2269345	+	asmbl_39906	none	STRG.3032.2,blat.proc3825164.chain_3222	2	STRG.3032.1,blat.proc3825164.chain_3223	2
scaffold_2	alternate_exon	5073826	5073857	-	asmbl_23125	none	STRG.1922.3	1	STRG.1922.2,blat.proc3825148.chain_1946	2
scaffold_2	starts_in_intron	7784954	7784954	+	asmbl_24574	none	Trinity_GG_18484_c0_g1_i9,blat.proc3825164.chain_2232	2	STRG.2075.1,blat.proc3825164.chain_2228,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	4
scaffold_14	alternate_exon	8292338	8292461	-	asmbl_13281	none	STRG.17253.3	1	STRG.17253.1,STRG.17253.2,blat.proc3825156.chain_2074	3
scaffold_14	spliced_intron	11573661	11574063	-	asmbl_13498,asmbl_13499	none	STRG.17499.2,STRG.17499.3,blat.proc3825156.chain_2304	3	STRG.17499.1,STRG.17499.4,Trinity_GG_9808_c0_g2_i1,blat.proc3825156.chain_2305	4
scaffold_3	alt_donor	11454734	11454735	-	asmbl_39165,asmbl_39167	none	STRG.3580.2,blat.proc3825148.chain_3376,blat.proc3825148.chain_3378	3	blat.proc3825148.chain_3377	1
scaffold_22	starts_in_intron	745168	745168	-	asmbl_29127	none	blat.proc3825160.chain_1923	1	STRG.24730.1,blat.proc3825160.chain_1924,blat.proc3825160.chain_1926	3
scaffold_6	retained_intron	569633	569861	-	asmbl_48041	none	STRG.7116.2,blat.proc3825150.chain_3216	2	STRG.7116.1,blat.proc3825150.chain_3217	2
scaffold_8	retained_intron	12625487	12625600	-	asmbl_52213,asmbl_52215	none	blat.proc3825152.chain_2674,blat.proc3825152.chain_2676	2	STRG.10437.1,blat.proc3825152.chain_2673,blat.proc3825152.chain_2675	3
scaffold_23	retained_intron	2585219	2585676	-	asmbl_30746	none	Trinity_GG_14322_c1_g1_i5	1	STRG.25725.1,STRG.25725.2,Trinity_GG_14322_c1_g1_i3,blat.proc3825160.chain_2775,blat.proc3825160.chain_2777,blat.proc3825160.chain_2778	6
scaffold_7	retained_exon	8296346	8296440	-	asmbl_50993	none	STRG.9066.3,blat.proc3825152.chain_1453	2	STRG.9066.1,blat.proc3825152.chain_1457	2
scaffold_17	spliced_intron	7047119	7049246	+	asmbl_18890	none	STRG.20370.3,blat.proc3825174.chain_1225,blat.proc3825174.chain_1227	3	STRG.20370.2,Trinity_GG_28477_c0_g2_i1,Trinity_GG_28477_c1_g1_i1,blat.proc3825174.chain_1230	4
scaffold_28	alternate_exon	5230264	5230319	-	asmbl_38258	none	Trinity_GG_16632_c0_g1_i2,blat.proc3825162.chain_2845	2	STRG.29674.1,STRG.29674.2,Trinity_GG_16632_c0_g1_i9,blat.proc3825162.chain_2843,blat.proc3825162.chain_2846,blat.proc3825162.chain_2848,blat.proc3825162.chain_2849	7
scaffold_15	alt_acceptor	1508681	1508682	+	asmbl_15016	none	STRG.17964.1	1	STRG.17964.2,Trinity_GG_27185_c0_g1_i4,blat.proc3825172.chain_2673	3
scaffold_13	alternate_exon	16147803	16150172	-	asmbl_10266	none	STRG.16663.2,Trinity_GG_9322_c2_g1_i1,blat.proc3825156.chain_1475	3	blat.proc3825156.chain_1430	1
scaffold_7	retained_intron	1235897	1236136	+	asmbl_49602	none	STRG.8637.2	1	STRG.8637.6	1
scaffold_5	alt_donor	15112072	15112073	-	asmbl_44643,asmbl_44645	none	STRG.6701.2,STRG.6701.3,Trinity_GG_3759_c0_g1_i3,blat.proc3825150.chain_2888	4	STRG.6701.1,Trinity_GG_3759_c0_g1_i1,blat.proc3825150.chain_2889	3
scaffold_21	starts_in_intron	2481501	2481501	-	asmbl_27469	none	Trinity_GG_13318_c0_g1_i1,blat.proc3825160.chain_1022	2	STRG.23873.1,Trinity_GG_13318_c0_g1_i2,blat.proc3825160.chain_1023	3
scaffold_2	alt_donor	4847948	4847949	-	asmbl_23106	none	STRG.1902.2	1	STRG.1902.1,blat.proc3825148.chain_1900	2
scaffold_28	starts_in_intron	5637122	5637122	-	asmbl_38308	none	Trinity_GG_16637_c0_g1_i5,blat.proc3825162.chain_2857	2	STRG.29706.2,STRG.29706.3,STRG.29706.4,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854	5
scaffold_21	alt_acceptor	7519995	7519996	+	asmbl_28746	none	STRG.24289.1,blat.proc3825176.chain_1502	2	STRG.24289.2,Trinity_GG_30770_c0_g1_i2,blat.proc3825176.chain_1501	3
scaffold_15	starts_in_intron	6883726	6883726	-	asmbl_14262	none	Trinity_GG_10293_c0_g1_i6,blat.proc3825156.chain_3157	2	STRG.18301.2,STRG.18301.4,STRG.18301.6,Trinity_GG_10293_c0_g1_i10,blat.proc3825156.chain_3154,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	7
scaffold_9	retained_intron	13297189	13297278	-	asmbl_55420	none	STRG.11628.4	1	STRG.11628.5	1
scaffold_7	alt_acceptor	8330200	8330201	-	asmbl_51010	none	Trinity_GG_5079_c0_g1_i10,blat.proc3825152.chain_1387	2	STRG.9069.1,STRG.9069.3,blat.proc3825152.chain_1386,blat.proc3825152.chain_1389,blat.proc3825152.chain_1390,blat.proc3825152.chain_1393	6
scaffold_12	alt_acceptor	6428071	6428072	-	asmbl_8536	none	Trinity_GG_8239_c1_g1_i1,blat.proc3825154.chain_3273	2	STRG.14754.1,STRG.14754.2,STRG.14754.3,blat.proc3825154.chain_3270,blat.proc3825154.chain_3271,blat.proc3825154.chain_3272	6
scaffold_26	starts_in_intron	2820962	2820962	-	asmbl_35449	none	Trinity_GG_15681_c0_g2_i1,blat.proc3825162.chain_1277	2	STRG.27976.1,blat.proc3825162.chain_1276	2
scaffold_3	ends_in_intron	18162545	18162545	-	asmbl_39601	none	Trinity_GG_2225_c0_g1_i1,blat.proc3825150.chain_209	2	STRG.4027.1,blat.proc3825150.chain_210	2
scaffold_23	alt_acceptor	5563909	5563910	+	asmbl_31574	none	STRG.25928.2	1	STRG.25928.1,blat.proc3825176.chain_2871	2
scaffold_2	alt_acceptor	9322220	9322221	-	asmbl_23386	none	STRG.2178.4	1	STRG.2178.2,Trinity_GG_1187_c1_g1_i2,blat.proc3825148.chain_2158,blat.proc3825148.chain_2159,blat.proc3825148.chain_2161	5
scaffold_24	retained_intron	2514768	2515025	+	asmbl_32102	none	STRG.26469.3,blat.proc3825176.chain_3421	2	STRG.26469.4,blat.proc3825176.chain_3420	2
scaffold_7	alt_acceptor	7615900	7615901	-	asmbl_50950,asmbl_50951	none	STRG.9014.1,STRG.9014.3,Trinity_GG_5063_c0_g1_i1,Trinity_GG_5063_c0_g1_i2,blat.proc3825152.chain_1351,blat.proc3825152.chain_1352	6	STRG.9014.2,STRG.9014.4	2
scaffold_9	skipped_exon	1820438	1822164	-	asmbl_54849	none	blat.proc3825152.chain_3132	1	blat.proc3825152.chain_3134	1
scaffold_13	spliced_intron	4378784	4378885	+	asmbl_10785,asmbl_10786,asmbl_10787,asmbl_10788,asmbl_10790	none	STRG.15764.1,STRG.15764.2,STRG.15764.3,STRG.15764.4,STRG.15764.5	5	Trinity_GG_25973_c0_g1_i3,blat.proc3825172.chain_501	2
scaffold_2	alt_donor	20130136	20130137	-	asmbl_23883	none	STRG.2842.1,blat.proc3825148.chain_2780	2	STRG.2842.2	1
scaffold_25	alt_acceptor	9119845	9119846	+	asmbl_33786	none	STRG.27725.4	1	STRG.27725.3,STRG.27725.5	2
scaffold_28	alternate_exon	6066596	6066690	+	asmbl_37619	none	STRG.29730.2	1	STRG.29730.1	1
scaffold_21	alt_donor	7493517	7493518	+	asmbl_28742	none	blat.proc3825176.chain_1495	1	STRG.24280.1	1
scaffold_1	retained_intron	5624546	5624630	-	asmbl_282	none	blat.proc3825148.chain_298	1	STRG.354.1,blat.proc3825148.chain_299	2
scaffold_25	ends_in_intron	9254469	9254469	+	asmbl_33794	none	blat.proc3825178.chain_831	1	STRG.27735.1,blat.proc3825178.chain_830	2
scaffold_14	starts_in_intron	12629480	12629480	-	asmbl_13586	none	blat.proc3825156.chain_2417	1	STRG.17582.1,STRG.17582.2,STRG.17582.3,STRG.17582.5,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2420,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	11
scaffold_1	starts_in_intron	1257098	1257098	-	asmbl_58	none	blat.proc3825148.chain_14	1	STRG.76.1,blat.proc3825148.chain_11	2
scaffold_13	skipped_exon	517905	519724	+	asmbl_10484,asmbl_10492	none	STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_184	5	STRG.15449.4,blat.proc3825172.chain_183	2
scaffold_13	alternate_exon	6138006	6138020	-	asmbl_9775	none	STRG.15919.1,Trinity_GG_8952_c0_g1_i3,blat.proc3825156.chain_809	3	STRG.15919.2	1
scaffold_2	alternate_exon	5074042	5074086	-	asmbl_23123	none	STRG.1922.2,blat.proc3825148.chain_1946	2	STRG.1922.3	1
scaffold_26	ends_in_intron	8449952	8449952	+	asmbl_35179	none	blat.proc3825178.chain_1536	1	STRG.28439.1,blat.proc3825178.chain_1537	2
scaffold_5	alt_acceptor	7400806	7400807	+	asmbl_45498	none	STRG.6136.2,blat.proc3825166.chain_2354	2	STRG.6136.1,Trinity_GG_20664_c1_g1_i1,blat.proc3825166.chain_2353	3
scaffold_5	spliced_intron	2242543	2242602	-	asmbl_43885	none	STRG.5763.2	1	STRG.5763.1,blat.proc3825150.chain_1959,blat.proc3825150.chain_1960	3
scaffold_21	alternate_exon	3125921	3126795	-	asmbl_27513,asmbl_27514,asmbl_27516	none	STRG.23943.3,STRG.23943.4,Trinity_GG_13335_c0_g1_i1,blat.proc3825160.chain_1056,blat.proc3825160.chain_1057,blat.proc3825160.chain_1060	6	STRG.23943.1,blat.proc3825160.chain_1059	2
scaffold_11	alt_donor	4683316	4683317	-	asmbl_6609,asmbl_6610,asmbl_6611,asmbl_6617	none	STRG.13564.1,STRG.13564.2,STRG.13564.4,blat.proc3825154.chain_2144,blat.proc3825154.chain_2145,blat.proc3825154.chain_2147	6	STRG.13564.5	1
scaffold_23	starts_in_intron	10019996	10019996	+	asmbl_31825	none	Trinity_GG_31756_c1_g1_i1,blat.proc3825176.chain_3107	2	STRG.26206.1,blat.proc3825176.chain_3103,blat.proc3825176.chain_3104,blat.proc3825176.chain_3106	4
scaffold_12	alt_donor	15263518	15263519	-	asmbl_9062	none	STRG.15338.1,Trinity_GG_8603_c0_g1_i1,blat.proc3825156.chain_178,blat.proc3825156.chain_180	4	STRG.15338.2	1
scaffold_16	alt_donor	2215962	2215963	+	asmbl_16125	none	blat.proc3825172.chain_3745	1	STRG.19123.2	1
scaffold_1	alternate_exon	12166139	12166599	+	asmbl_2184,asmbl_2187	none	blat.proc3825164.chain_1006,blat.proc3825164.chain_1008	2	STRG.838.2	1
scaffold_10	retained_intron	9042003	9042107	+	asmbl_3359	none	Trinity_GG_24291_c0_g1_i2,blat.proc3825170.chain_1271	2	STRG.12653.1,blat.proc3825170.chain_1272,blat.proc3825170.chain_1273	3
scaffold_21	starts_in_intron	844564	844564	-	asmbl_27365	none	blat.proc3825160.chain_899	1	STRG.23778.1,blat.proc3825160.chain_900	2
scaffold_9	skipped_exon	11793088	11794485	-	asmbl_55304,asmbl_55305	none	STRG.11496.2,STRG.11496.4,blat.proc3825152.chain_3683	3	STRG.11496.1,blat.proc3825152.chain_3684,blat.proc3825152.chain_3686	3
scaffold_6	alt_donor	2487617	2487618	+	asmbl_46758,asmbl_46759	none	STRG.7248.1,STRG.7248.5	2	STRG.7248.4,Trinity_GG_21329_c1_g1_i1,blat.proc3825166.chain_3500	3
scaffold_11	alt_acceptor	9950772	9950773	-	asmbl_6969	none	STRG.14013.1,blat.proc3825154.chain_2520	2	STRG.14013.2	1
scaffold_2	ends_in_intron	6903505	6903505	+	asmbl_24508,asmbl_24510,asmbl_24511,asmbl_24512,asmbl_24515	none	STRG.2036.1,STRG.2036.4,blat.proc3825164.chain_2156,blat.proc3825164.chain_2158,blat.proc3825164.chain_2159,blat.proc3825164.chain_2160	6	STRG.2036.2,STRG.2036.3,blat.proc3825164.chain_2155	3
scaffold_22	skipped_exon	9718380	9721163	+	asmbl_30314	none	STRG.25308.3	1	STRG.25308.1,STRG.25308.2,STRG.25308.4,blat.proc3825176.chain_2309	4
scaffold_11	alternate_exon	12410298	12410342	-	asmbl_7088	none	STRG.14158.2	1	STRG.14158.1	1
scaffold_25	retained_intron	9503273	9503414	-	asmbl_34504	none	Trinity_GG_15543_c0_g1_i4,blat.proc3825162.chain_1076	2	STRG.27764.1,blat.proc3825162.chain_1075,blat.proc3825162.chain_1078	3
scaffold_4	alt_donor	17109178	17109179	+	asmbl_42037	none	Trinity_GG_20255_c0_g1_i1	1	STRG.5308.1,STRG.5308.2,STRG.5308.3,STRG.5308.4,blat.proc3825166.chain_1666,blat.proc3825166.chain_1668,blat.proc3825166.chain_1669	7
scaffold_44	alternate_exon	29974	30070	-	asmbl_43713,asmbl_43715	none	STRG.30048.2,STRG.30048.3,blat.proc3825162.chain_3218	3	STRG.30048.1	1
scaffold_12	retained_exon	15212685	15212743	+	asmbl_8114,asmbl_8115	none	STRG.15322.1,STRG.15322.2,Trinity_GG_25697_c0_g1_i2,Trinity_GG_25697_c0_g1_i3,blat.proc3825170.chain_3727,blat.proc3825170.chain_3728	6	STRG.15322.3,Trinity_GG_25697_c0_g1_i4,blat.proc3825170.chain_3730	3
scaffold_1	retained_intron	14355835	14355968	-	asmbl_901	none	blat.proc3825148.chain_1038	1	blat.proc3825148.chain_1037,blat.proc3825148.chain_1040	2
scaffold_20	retained_intron	11142153	11142251	+	asmbl_27015,asmbl_27021,asmbl_27022	none	STRG.23640.1,STRG.23640.2,Trinity_GG_30351_c0_g1_i3,Trinity_GG_30351_c0_g1_i4,blat.proc3825176.chain_750,blat.proc3825176.chain_752	6	STRG.23640.3,Trinity_GG_30351_c0_g1_i5,blat.proc3825176.chain_748	3
scaffold_8	alt_donor	17764233	17764234	+	asmbl_53500	none	STRG.10691.2	1	STRG.10691.1,Trinity_GG_23246_c0_g1_i2,blat.proc3825168.chain_3233	3
scaffold_13	starts_in_intron	366456	366456	-	asmbl_9312	none	Trinity_GG_8663_c0_g1_i21,blat.proc3825156.chain_298	2	STRG.15442.4	1
scaffold_4	alternate_exon	4551832	4552469	+	asmbl_41291	none	STRG.4367.2	1	STRG.4367.3,blat.proc3825166.chain_778	2
scaffold_9	spliced_intron	13304979	13305210	-	asmbl_55428,asmbl_55430,asmbl_55431	none	STRG.11631.1,STRG.11631.2,Trinity_GG_6406_c0_g1_i2,blat.proc3825154.chain_72	4	STRG.11631.3,Trinity_GG_6406_c0_g1_i1,blat.proc3825154.chain_70,blat.proc3825154.chain_71	4
scaffold_9	starts_in_intron	16739491	16739491	-	asmbl_55622,asmbl_55623	none	blat.proc3825154.chain_308,blat.proc3825154.chain_309	2	STRG.11819.1	1
scaffold_17	spliced_intron	2566428	2566630	+	asmbl_18663,asmbl_18666	none	STRG.20057.2,STRG.20057.3,blat.proc3825174.chain_934	3	Trinity_GG_28293_c0_g2_i2,blat.proc3825174.chain_933	2
scaffold_14	retained_intron	218091	218231	-	asmbl_12808	none	blat.proc3825156.chain_1514	1	STRG.16718.1,STRG.16718.2,STRG.16718.3,STRG.16718.4,blat.proc3825156.chain_1511,blat.proc3825156.chain_1512,blat.proc3825156.chain_1513	7
scaffold_26	ends_in_intron	37410	37410	-	asmbl_35366	none	Trinity_GG_15608_c0_g1_i1,blat.proc3825162.chain_1172	2	STRG.27828.1,blat.proc3825162.chain_1174	2
scaffold_9	alt_donor	1665026	1665027	-	asmbl_54825	none	STRG.10862.5	1	STRG.10862.7	1
scaffold_11	spliced_intron	11641796	11641901	+	asmbl_5980,asmbl_5982,asmbl_5983,asmbl_5986,asmbl_5987,asmbl_5988,asmbl_5989	none	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2633,blat.proc3825170.chain_2634,blat.proc3825170.chain_2635,blat.proc3825170.chain_2637,blat.proc3825170.chain_2639,blat.proc3825170.chain_2640	8	blat.proc3825170.chain_2636	1
scaffold_20	alt_donor	11695322	11695323	-	asmbl_26190	none	blat.proc3825160.chain_771	1	STRG.23682.1,blat.proc3825160.chain_772	2
scaffold_21	retained_intron	7508102	7508305	-	asmbl_27834,asmbl_27836	none	STRG.24283.2,Trinity_GG_13549_c0_g1_i1,blat.proc3825160.chain_1433	3	STRG.24283.1,blat.proc3825160.chain_1432	2
scaffold_15	ends_in_intron	9872802	9872802	+	asmbl_15427	none	Trinity_GG_27427_c4_g1_i1,blat.proc3825172.chain_3116	2	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3108,blat.proc3825172.chain_3109	4
scaffold_9	starts_in_intron	6923770	6923770	-	asmbl_55103	none	blat.proc3825152.chain_3454	1	STRG.11207.2,blat.proc3825152.chain_3455	2
scaffold_6	alt_acceptor	8054841	8054842	+	asmbl_47094	none	STRG.7685.2	1	STRG.7685.1,blat.proc3825168.chain_115	2
scaffold_2	ends_in_intron	14542758	14542758	+	asmbl_24955	none	blat.proc3825164.chain_2652	1	STRG.2464.1,STRG.2464.2,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	10
scaffold_3	retained_intron	5951042	5951658	-	asmbl_38884,asmbl_38886	none	STRG.3259.2,blat.proc3825148.chain_3163	2	STRG.3259.4,STRG.3259.5,blat.proc3825148.chain_3162	3
scaffold_1	alt_donor	16487557	16487558	-	asmbl_990,asmbl_998	none	STRG.1159.1,blat.proc3825148.chain_1101,blat.proc3825148.chain_1102	3	STRG.1159.2,blat.proc3825148.chain_1096	2
scaffold_1	alternate_exon	4586420	4586649	+	asmbl_1676	none	blat.proc3825164.chain_318	1	STRG.283.1,blat.proc3825164.chain_317	2
scaffold_9	alt_acceptor	17450681	17450682	+	asmbl_54633	none	STRG.11838.3	1	STRG.11838.1,STRG.11838.2,blat.proc3825170.chain_639	3
scaffold_28	ends_in_intron	5204751	5204751	-	asmbl_38249	none	Trinity_GG_16630_c0_g2_i1,blat.proc3825162.chain_2840	2	STRG.29668.1,blat.proc3825162.chain_2838	2
scaffold_24	starts_in_intron	7286408	7286408	+	asmbl_32381	none	blat.proc3825176.chain_3723	1	blat.proc3825176.chain_3722	1
scaffold_5	alt_donor	10983590	10983591	+	asmbl_45720	none	STRG.6378.2	1	STRG.6378.1	1
scaffold_14	alternate_exon	15540359	15540616	+	asmbl_12614	none	Trinity_GG_27111_c0_g1_i1,blat.proc3825172.chain_2548	2	STRG.17794.1,Trinity_GG_27111_c0_g2_i2	2
scaffold_16	retained_intron	672773	672865	+	asmbl_16033,asmbl_16035	none	STRG.19045.1,STRG.19045.4,Trinity_GG_27750_c0_g1_i2,Trinity_GG_27750_c0_g1_i3,blat.proc3825172.chain_3697,blat.proc3825172.chain_3699	6	STRG.19045.2,STRG.19045.3,Trinity_GG_27750_c0_g1_i5,blat.proc3825172.chain_3698,blat.proc3825172.chain_3701	5
scaffold_10	alt_acceptor	7668132	7668133	+	asmbl_3290	none	STRG.12555.3	1	STRG.12555.1,STRG.12555.2,blat.proc3825170.chain_1181,blat.proc3825170.chain_1182,blat.proc3825170.chain_1183	5
scaffold_2	starts_in_intron	7041968	7041968	+	asmbl_24520,asmbl_24521,asmbl_24522,asmbl_24523	none	Trinity_GG_18468_c0_g1_i1,Trinity_GG_18468_c0_g1_i2,Trinity_GG_18468_c0_g1_i3,Trinity_GG_18468_c0_g1_i5,blat.proc3825164.chain_2192,blat.proc3825164.chain_2193,blat.proc3825164.chain_2194,blat.proc3825164.chain_2195	8	STRG.2044.1	1
scaffold_15	starts_in_intron	14650436	14650436	+	asmbl_15693	none	Trinity_GG_27664_c0_g1_i2	1	STRG.18879.1,Trinity_GG_27664_c0_g1_i1,Trinity_GG_27664_c0_g1_i3	3
scaffold_4	alt_acceptor	17631817	17631818	-	asmbl_43292	none	STRG.5356.3	1	STRG.5356.1,STRG.5356.2,blat.proc3825150.chain_1527	3
scaffold_23	ends_in_intron	4179108	4179108	-	asmbl_30843	none	blat.proc3825160.chain_3019	1	STRG.25828.1,blat.proc3825160.chain_3020	2
scaffold_3	alternate_exon	17455909	17455933	+	asmbl_40683	none	STRG.3978.5	1	STRG.3978.1	1
scaffold_13	alternate_exon	13973710	13975995	+	asmbl_11415,asmbl_11416	none	blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	2	STRG.16448.2	1
scaffold_28	alt_donor	5638054	5638055	-	asmbl_38306,asmbl_38307,asmbl_38309,asmbl_38310,asmbl_38313	none	STRG.29706.1,STRG.29706.2,STRG.29706.3,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854,blat.proc3825162.chain_2855,blat.proc3825162.chain_2858,blat.proc3825162.chain_2859	8	STRG.29706.4,blat.proc3825162.chain_2856	2
scaffold_8	spliced_intron	16279130	16279219	+	asmbl_53444	none	Trinity_GG_23225_c0_g1_i2,blat.proc3825168.chain_3191	2	Trinity_GG_23225_c0_g1_i1,blat.proc3825168.chain_3192	2
scaffold_16	alternate_exon	2214964	2215051	+	asmbl_16125	none	blat.proc3825172.chain_3745	1	STRG.19123.1,STRG.19123.2,Trinity_GG_27776_c0_g1_i2,blat.proc3825172.chain_3744	4
scaffold_4	alt_donor	4414707	4414708	+	asmbl_41244,asmbl_41245,asmbl_41249,asmbl_41259	none	STRG.4349.2,STRG.4349.4,Trinity_GG_19749_c0_g1_i11,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_840,blat.proc3825166.chain_846,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_852	10	STRG.4349.3,Trinity_GG_19749_c0_g1_i2,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_842,blat.proc3825166.chain_843,blat.proc3825166.chain_845,blat.proc3825166.chain_853	7
scaffold_17	ends_in_intron	2521250	2521250	-	asmbl_17753	none	blat.proc3825158.chain_1085	1	STRG.20047.1,blat.proc3825158.chain_1086	2
scaffold_25	starts_in_intron	4538825	4538825	+	asmbl_33510	none	Trinity_GG_32413_c0_g1_i4,blat.proc3825178.chain_491	2	STRG.27392.1,blat.proc3825178.chain_493,blat.proc3825178.chain_495	3
scaffold_13	alternate_exon	8804969	8805239	-	asmbl_9979	none	Trinity_GG_9086_c0_g1_i7,blat.proc3825156.chain_1069	2	blat.proc3825156.chain_1066	1
scaffold_28	alternate_exon	2653263	2655310	+	asmbl_37395	none	STRG.29457.1	1	blat.proc3825178.chain_2669,blat.proc3825178.chain_2670	2
scaffold_20	alt_acceptor	8116515	8116516	-	asmbl_25960	none	STRG.23361.2,blat.proc3825160.chain_484,blat.proc3825160.chain_485	3	STRG.23361.1,blat.proc3825160.chain_486	2
scaffold_7	spliced_intron	2515770	2515883	+	asmbl_49653	none	Trinity_GG_22096_c1_g1_i2	1	Trinity_GG_22096_c1_g1_i1,blat.proc3825168.chain_1186	2
scaffold_18	starts_in_intron	3579984	3579984	+	asmbl_20456	none	Trinity_GG_28960_c0_g1_i1,blat.proc3825174.chain_2105	2	STRG.21174.1,blat.proc3825174.chain_2106	2
scaffold_20	retained_intron	2765358	2765473	-	asmbl_25669	none	Trinity_GG_12845_c0_g1_i2,blat.proc3825160.chain_97	2	STRG.23018.3,STRG.23018.4	2
scaffold_9	ends_in_intron	9470713	9470713	-	asmbl_55177	none	Trinity_GG_6272_c0_g1_i4,blat.proc3825152.chain_3568	2	STRG.11310.1,STRG.11310.2,STRG.11310.3,blat.proc3825152.chain_3566,blat.proc3825152.chain_3567,blat.proc3825152.chain_3570	6
scaffold_11	alternate_exon	8249802	8249830	-	asmbl_6854	none	STRG.13833.1	1	Trinity_GG_7744_c0_g1_i1,blat.proc3825154.chain_2397	2
scaffold_7	retained_intron	10543036	10543134	+	asmbl_50130	none	blat.proc3825168.chain_1718	1	STRG.9230.1,blat.proc3825168.chain_1719	2
scaffold_9	spliced_intron	3912783	3912902	-	asmbl_54950,asmbl_54952	none	STRG.11010.1,STRG.11010.2,Trinity_GG_6105_c0_g1_i2,blat.proc3825152.chain_3262	4	STRG.11010.3,Trinity_GG_6105_c0_g1_i1,blat.proc3825152.chain_3263	3
scaffold_25	retained_intron	8476570	8476690	+	asmbl_33738	none	blat.proc3825178.chain_789	1	STRG.27679.1,blat.proc3825178.chain_791,blat.proc3825178.chain_792	3
scaffold_21	alt_acceptor	3979554	3979555	+	asmbl_28493	none	STRG.23982.1,blat.proc3825176.chain_1098	2	STRG.23982.2	1
scaffold_2	starts_in_intron	16399581	16399581	+	asmbl_25132,asmbl_25134	none	STRG.2581.2,STRG.2581.3,Trinity_GG_18772_c0_g1_i4,blat.proc3825164.chain_2865	4	STRG.2581.1,blat.proc3825164.chain_2866	2
scaffold_10	spliced_intron	8900622	8900805	-	asmbl_4636	none	STRG.12638.1	1	STRG.12638.2	1
scaffold_23	starts_in_intron	10974737	10974737	+	asmbl_31904	none	STRG.26307.2	1	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_808	ends_in_intron	1824	1824	-	asmbl_53675	none	Trinity_GG_17101_c0_g1_i2,blat.proc3825162.chain_3574	2	STRG.30478.1,blat.proc3825162.chain_3575	2
scaffold_22	alternate_exon	9037267	9037833	-	asmbl_29511	none	STRG.25238.1	1	STRG.25238.2,Trinity_GG_14123_c0_g1_i1,blat.proc3825160.chain_2410	3
scaffold_1	spliced_intron	3270179	3270358	-	asmbl_143	none	STRG.204.4	1	STRG.204.2,blat.proc3825148.chain_202	2
scaffold_2	alt_acceptor	5706615	5706616	-	asmbl_23154	none	STRG.1962.2,blat.proc3825148.chain_1963	2	STRG.1962.1,blat.proc3825148.chain_1961,blat.proc3825148.chain_1964	3
scaffold_6	alternate_exon	18688609	18688652	+	asmbl_47841	none	STRG.8537.1,Trinity_GG_22011_c0_g1_i1,blat.proc3825168.chain_1009	3	STRG.8537.2	1
scaffold_18	spliced_intron	7662268	7663046	+	asmbl_20764	none	STRG.21471.4	1	STRG.21471.1,STRG.21471.2,STRG.21471.3,STRG.21471.5,STRG.21471.6,Trinity_GG_29183_c0_g1_i11,Trinity_GG_29183_c0_g1_i7	7
scaffold_5	retained_exon	6065159	6065217	+	asmbl_45398,asmbl_45401	none	STRG.6029.2,STRG.6029.3,blat.proc3825166.chain_2269	3	STRG.6029.1,blat.proc3825166.chain_2270	2
scaffold_13	retained_intron	3529936	3530025	+	asmbl_10706	none	blat.proc3825172.chain_360	1	STRG.15676.1,STRG.15676.2,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_363,blat.proc3825172.chain_364	6
scaffold_19	starts_in_intron	2874390	2874390	+	asmbl_21288	none	Trinity_GG_29461_c0_g1_i2,blat.proc3825174.chain_3004	2	STRG.21977.1,blat.proc3825174.chain_3003	2
scaffold_3	spliced_intron	3890125	3890210	+	asmbl_39979	none	STRG.3108.1,blat.proc3825164.chain_3348,blat.proc3825164.chain_3349	3	STRG.3108.2	1
scaffold_10	alt_acceptor	5685170	5685171	+	asmbl_3191,asmbl_3193	none	STRG.12396.1,STRG.12396.3,blat.proc3825170.chain_1001	3	STRG.12396.2	1
scaffold_16	spliced_intron	3564452	3564605	-	asmbl_16983	none	STRG.19171.2,blat.proc3825158.chain_302	2	STRG.19171.1,blat.proc3825158.chain_300,blat.proc3825158.chain_301	3
scaffold_27	retained_exon	2641397	2641510	+	asmbl_36099	none	STRG.28739.2,blat.proc3825178.chain_1855	2	STRG.28739.1,blat.proc3825178.chain_1854	2
scaffold_9	alternate_exon	6992181	6992293	+	asmbl_54119,asmbl_54120	none	STRG.11214.2,STRG.11214.3,blat.proc3825168.chain_3697,blat.proc3825168.chain_3698	4	STRG.11214.1,blat.proc3825168.chain_3696	2
scaffold_15	retained_intron	676925	677039	-	asmbl_13939	none	blat.proc3825156.chain_2722	1	STRG.17932.1,blat.proc3825156.chain_2721	2
scaffold_7	starts_in_intron	8510896	8510896	+	asmbl_50002	none	Trinity_GG_22354_c0_g1_i7,blat.proc3825168.chain_1608	2	STRG.9078.1,STRG.9078.2,STRG.9078.3,blat.proc3825168.chain_1604,blat.proc3825168.chain_1607	5
scaffold_10	alternate_exon	8327617	8327747	-	asmbl_4580	none	blat.proc3825154.chain_1192	1	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1182,blat.proc3825154.chain_1186,blat.proc3825154.chain_1188,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190	7
scaffold_22	spliced_intron	1707174	1707269	-	asmbl_29147	none	STRG.24761.1,Trinity_GG_13841_c0_g1_i3,blat.proc3825160.chain_1958	3	STRG.24761.2,Trinity_GG_13841_c0_g1_i1,blat.proc3825160.chain_1959	3
scaffold_9	spliced_intron	15384599	15384899	+	asmbl_54558,asmbl_54561,asmbl_54563	none	STRG.11739.1,STRG.11739.3,blat.proc3825170.chain_501,blat.proc3825170.chain_503	4	blat.proc3825170.chain_502	1
scaffold_25	retained_exon	637688	637796	-	asmbl_33995	none	STRG.27114.3	1	STRG.27114.2,blat.proc3825162.chain_464	2
scaffold_15	retained_intron	395669	395769	-	asmbl_13920	none	STRG.17896.2	1	STRG.17896.1,blat.proc3825156.chain_2701,blat.proc3825156.chain_2702	3
scaffold_6	starts_in_intron	11115647	11115647	-	asmbl_48740,asmbl_48741	none	STRG.7925.2,Trinity_GG_4505_c0_g1_i4,blat.proc3825152.chain_328	3	STRG.7925.1,STRG.7925.3	2
scaffold_8	starts_in_intron	4888649	4888649	+	asmbl_52874,asmbl_52876	none	Trinity_GG_22807_c1_g1_i2,blat.proc3825168.chain_2420,blat.proc3825168.chain_2423	3	STRG.9956.1,blat.proc3825168.chain_2419	2
scaffold_7	retained_intron	9311935	9312011	+	asmbl_50077	none	Trinity_GG_22395_c0_g1_i1,blat.proc3825168.chain_1672	2	STRG.9144.1,Trinity_GG_22395_c0_g1_i2,Trinity_GG_22395_c0_g1_i3,Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669,blat.proc3825168.chain_1670,blat.proc3825168.chain_1671	7
scaffold_18	alt_acceptor	5905385	5905386	-	asmbl_19879	none	STRG.21337.3	1	STRG.21337.1,STRG.21337.2,Trinity_GG_11944_c1_g1_i1,blat.proc3825158.chain_2263	4
scaffold_9	alt_donor	15392594	15392595	+	asmbl_54573	none	Trinity_GG_23876_c0_g1_i3,blat.proc3825170.chain_551	2	STRG.11741.1,Trinity_GG_23876_c0_g1_i4,Trinity_GG_23876_c0_g1_i5,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i7,blat.proc3825170.chain_552,blat.proc3825170.chain_553,blat.proc3825170.chain_554,blat.proc3825170.chain_557	9
scaffold_10	starts_in_intron	5173929	5173929	+	asmbl_3154	none	blat.proc3825170.chain_988	1	STRG.12343.1,STRG.12343.2,blat.proc3825170.chain_990,blat.proc3825170.chain_991	4
scaffold_23	alt_acceptor	6994684	6994685	-	asmbl_31001	none	STRG.26023.2,blat.proc3825160.chain_3185	2	STRG.26023.1	1
scaffold_18	alt_donor	13805470	13805471	+	asmbl_21036,asmbl_21038,asmbl_21040,asmbl_21041	none	STRG.21822.1,Trinity_GG_29370_c0_g1_i1,Trinity_GG_29370_c0_g1_i3,blat.proc3825174.chain_2835,blat.proc3825174.chain_2837,blat.proc3825174.chain_2838,blat.proc3825174.chain_2839	7	Trinity_GG_29370_c0_g1_i2,blat.proc3825174.chain_2836	2
scaffold_8	alternate_exon	15210939	15211127	+	asmbl_53390	none	STRG.10555.1	1	STRG.10555.2	1
scaffold_24	alt_donor	10479702	10479703	+	asmbl_32563	none	STRG.27018.1,blat.proc3825178.chain_205	2	STRG.27018.2,STRG.27018.3,STRG.27018.4,blat.proc3825178.chain_204,blat.proc3825178.chain_206	5
scaffold_26	alt_acceptor	9774401	9774402	+	asmbl_35262,asmbl_35263	none	STRG.28516.3,STRG.28516.7,blat.proc3825178.chain_1649	3	STRG.28516.5	1
scaffold_13	ends_in_intron	9359803	9359803	-	asmbl_10028	none	blat.proc3825156.chain_1092	1	STRG.16207.1,blat.proc3825156.chain_1091	2
scaffold_2	retained_intron	9120966	9121051	+	asmbl_24665	none	Trinity_GG_18540_c0_g1_i1,blat.proc3825164.chain_2359	2	STRG.2156.1,STRG.2156.2,Trinity_GG_18540_c0_g1_i2,blat.proc3825164.chain_2360	4
scaffold_13	alt_acceptor	3352875	3352876	-	asmbl_9535	none	STRG.15647.1,blat.proc3825156.chain_529	2	STRG.15647.2	1
scaffold_18	alt_acceptor	647081	647082	+	asmbl_20319	none	STRG.21005.2	1	STRG.21005.1,Trinity_GG_28827_c0_g1_i2,Trinity_GG_28827_c0_g1_i5,Trinity_GG_28827_c0_g1_i6,blat.proc3825174.chain_1855,blat.proc3825174.chain_1856,blat.proc3825174.chain_1858	7
scaffold_9	alt_acceptor	5528965	5528966	+	asmbl_54049	none	STRG.11135.1,Trinity_GG_23507_c1_g1_i2,blat.proc3825168.chain_3645	3	STRG.11135.2,Trinity_GG_23507_c1_g1_i1,blat.proc3825168.chain_3646	3
scaffold_22	starts_in_intron	4242726	4242726	-	asmbl_29216	none	blat.proc3825160.chain_2080	1	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2081	4
scaffold_18	ends_in_intron	649530	649530	+	asmbl_20315	none	blat.proc3825174.chain_1856	1	STRG.21005.1,STRG.21005.2,Trinity_GG_28827_c0_g1_i2,Trinity_GG_28827_c0_g1_i3,Trinity_GG_28827_c0_g1_i5,blat.proc3825174.chain_1855,blat.proc3825174.chain_1857,blat.proc3825174.chain_1858	8
scaffold_16	spliced_intron	795167	795376	+	asmbl_16053	none	STRG.19057.1,blat.proc3825172.chain_3705	2	STRG.19057.2,blat.proc3825172.chain_3706	2
scaffold_10	retained_exon	6018838	6018961	-	asmbl_4417	none	blat.proc3825154.chain_1005	1	blat.proc3825154.chain_1006	1
scaffold_18	starts_in_intron	6238802	6238802	-	asmbl_19888	none	Trinity_GG_11970_c3_g1_i1,blat.proc3825158.chain_2307	2	STRG.21355.1,STRG.21355.2,blat.proc3825158.chain_2304	3
scaffold_9	retained_intron	14817657	14818073	-	asmbl_55495,asmbl_55502,asmbl_55504	none	STRG.11702.3,Trinity_GG_6457_c0_g1_i1,blat.proc3825154.chain_161,blat.proc3825154.chain_164	4	STRG.11702.1,blat.proc3825154.chain_160	2
scaffold_15	retained_intron	15188079	15189128	+	asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737	none	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	6	STRG.18910.1,blat.proc3825172.chain_3520,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3529,blat.proc3825172.chain_3532,blat.proc3825172.chain_3535	7
scaffold_14	starts_in_intron	9191431	9191431	+	asmbl_12275	none	blat.proc3825172.chain_2082	1	STRG.17321.1,STRG.17321.2,blat.proc3825172.chain_2084,blat.proc3825172.chain_2085	4
scaffold_3	alt_donor	6832388	6832389	+	asmbl_40140	none	STRG.3309.2	1	STRG.3309.1,blat.proc3825164.chain_3582,blat.proc3825164.chain_3583	3
scaffold_15	spliced_intron	15409801	15410226	+	asmbl_15767	none	STRG.18930.6,blat.proc3825172.chain_3589	2	STRG.18930.4,blat.proc3825172.chain_3591	2
scaffold_17	retained_exon	9030392	9030442	-	asmbl_18139,asmbl_18140,asmbl_18142,asmbl_18143	none	STRG.20532.1,STRG.20532.2,STRG.20532.4,STRG.20532.5,blat.proc3825158.chain_1576	5	STRG.20532.6	1
scaffold_11	starts_in_intron	3767907	3767907	-	asmbl_6580	none	Trinity_GG_7568_c0_g1_i9	1	STRG.13508.1,STRG.13508.3,STRG.13508.4,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	5
scaffold_6	retained_intron	12992093	12992335	-	asmbl_48858	none	STRG.8068.2,blat.proc3825152.chain_495	2	STRG.8068.3,STRG.8068.4,blat.proc3825152.chain_489	3
scaffold_21	skipped_exon	2165861	2166831	-	asmbl_27435	none	STRG.23841.2	1	STRG.23841.1,blat.proc3825160.chain_907,blat.proc3825160.chain_908,blat.proc3825160.chain_909	4
scaffold_7	starts_in_intron	12366147	12366147	-	asmbl_51200,asmbl_51203	none	blat.proc3825152.chain_1708,blat.proc3825152.chain_1710	2	STRG.9334.1,STRG.9334.2,Trinity_GG_5256_c0_g1_i3,blat.proc3825152.chain_1706,blat.proc3825152.chain_1707,blat.proc3825152.chain_1709	6
scaffold_6	alt_donor	16888533	16888534	-	asmbl_49176	none	STRG.8411.3,Trinity_GG_4777_c0_g1_i3,blat.proc3825152.chain_822	3	STRG.8411.1,STRG.8411.2,Trinity_GG_4777_c0_g1_i2,Trinity_GG_4777_c0_g1_i4,blat.proc3825152.chain_819,blat.proc3825152.chain_820	6
scaffold_14	spliced_intron	10717597	10717700	+	asmbl_12343,asmbl_12345	none	STRG.17426.1,STRG.17426.2,Trinity_GG_26881_c0_g1_i2,blat.proc3825172.chain_2153	4	Trinity_GG_26881_c0_g1_i1,blat.proc3825172.chain_2152	2
scaffold_4	alt_donor	17503665	17503666	-	asmbl_43279	none	STRG.5337.2,blat.proc3825150.chain_1494	2	STRG.5337.1,blat.proc3825150.chain_1492	2
scaffold_7	skipped_exon	4391931	4392703	+	asmbl_49735,asmbl_49736	none	Trinity_GG_22151_c0_g1_i1,Trinity_GG_22151_c0_g1_i3	2	blat.proc3825168.chain_1270,blat.proc3825168.chain_1271	2
scaffold_26	starts_in_intron	9850902	9850902	+	asmbl_35281	none	Trinity_GG_33060_c2_g1_i1,blat.proc3825178.chain_1583	2	STRG.28546.1,STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1575,blat.proc3825178.chain_1576,blat.proc3825178.chain_1577,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	13
scaffold_7	ends_in_intron	4045835	4045835	-	asmbl_50847	none	STRG.8803.2,Trinity_GG_5023_c0_g1_i1,blat.proc3825152.chain_1273	3	STRG.8803.1,blat.proc3825152.chain_1274	2
scaffold_13	spliced_intron	517905	519724	+	asmbl_10484,asmbl_10492	none	STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_184	5	STRG.15449.1,blat.proc3825172.chain_188	2
scaffold_6	ends_in_intron	12499891	12499891	+	asmbl_47411	none	STRG.8009.2,blat.proc3825168.chain_490,blat.proc3825168.chain_491	3	STRG.8009.1,blat.proc3825168.chain_494,blat.proc3825168.chain_495	3
scaffold_19	skipped_exon	10850753	10852820	-	asmbl_22359	none	STRG.22428.2,Trinity_GG_12436_c0_g1_i3,blat.proc3825158.chain_3112	3	STRG.22428.1	1
scaffold_14	alternate_exon	8006022	8007445	+	asmbl_12186	none	STRG.17217.2,blat.proc3825172.chain_1983	2	Trinity_GG_26787_c0_g1_i2,blat.proc3825172.chain_1984	2
scaffold_2	spliced_intron	9322568	9323761	-	asmbl_23383	none	STRG.2178.2,blat.proc3825148.chain_2159	2	STRG.2178.3	1
scaffold_17	retained_intron	7116861	7117011	-	asmbl_18044,asmbl_18046	none	STRG.20381.2,Trinity_GG_11453_c0_g1_i3,Trinity_GG_11453_c0_g1_i4,blat.proc3825158.chain_1406,blat.proc3825158.chain_1407	5	STRG.20381.1,Trinity_GG_11453_c0_g1_i1,Trinity_GG_11453_c0_g1_i2,blat.proc3825158.chain_1405,blat.proc3825158.chain_1408	5
scaffold_17	starts_in_intron	5725605	5725605	-	asmbl_17952	none	STRG.20273.2,blat.proc3825158.chain_1322	2	STRG.20273.1,STRG.20273.3,blat.proc3825158.chain_1321	3
scaffold_10	alt_acceptor	5824112	5824113	+	asmbl_3208	none	STRG.12406.2,Trinity_GG_24196_c0_g1_i4,blat.proc3825170.chain_1100	3	STRG.12406.3,Trinity_GG_24196_c0_g1_i3,blat.proc3825170.chain_1101	3
scaffold_1	spliced_intron	4864196	4864320	-	asmbl_219	none	blat.proc3825148.chain_257	1	STRG.292.2,blat.proc3825148.chain_256	2
scaffold_4	alt_acceptor	6189052	6189053	-	asmbl_42661,asmbl_42663,asmbl_42664	none	STRG.4491.2,Trinity_GG_2477_c0_g1_i1,blat.proc3825150.chain_677,blat.proc3825150.chain_679	4	STRG.4491.1,STRG.4491.3,Trinity_GG_2477_c0_g1_i3,blat.proc3825150.chain_678	4
scaffold_11	retained_exon	8309207	8309245	+	asmbl_5748	none	blat.proc3825170.chain_2381	1	STRG.13846.1,blat.proc3825170.chain_2382	2
scaffold_2	alt_donor	4578467	4578468	+	asmbl_24366	none	STRG.1886.3	1	STRG.1886.2,Trinity_GG_18341_c1_g1_i4,blat.proc3825164.chain_1977,blat.proc3825164.chain_1979,blat.proc3825164.chain_1980	5
scaffold_2	starts_in_intron	15698839	15698839	+	asmbl_25071,asmbl_25072	none	blat.proc3825164.chain_2754	1	STRG.2526.1,blat.proc3825164.chain_2755	2
scaffold_13	starts_in_intron	9220223	9220223	+	asmbl_11178	none	STRG.16181.2	1	STRG.16181.1,blat.proc3825172.chain_875	2
scaffold_12	retained_exon	1056754	1057091	+	asmbl_7454,asmbl_7455	none	STRG.14447.1,STRG.14447.4,blat.proc3825170.chain_2948	3	STRG.14447.2	1
scaffold_9	skipped_exon	15495374	15496423	-	asmbl_55531	none	STRG.11747.3,blat.proc3825154.chain_218	2	STRG.11747.1,blat.proc3825154.chain_215	2
scaffold_19	ends_in_intron	3671080	3671080	-	asmbl_22123	none	blat.proc3825158.chain_2896	1	STRG.22046.1,Trinity_GG_12309_c0_g1_i1,Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2893,blat.proc3825158.chain_2894,blat.proc3825158.chain_2898	6
scaffold_3	alternate_exon	6184449	6190110	-	asmbl_38914	none	blat.proc3825148.chain_3124	1	STRG.3266.3,blat.proc3825148.chain_3118	2
scaffold_22	alt_donor	4412040	4412041	-	asmbl_29260	none	STRG.24860.3	1	STRG.24860.1,STRG.24860.2	2
scaffold_27	alternate_exon	384415	384823	-	asmbl_36684	none	STRG.28567.1,blat.proc3825162.chain_1731	2	STRG.28567.4,STRG.28567.5,Trinity_GG_15949_c1_g1_i4,blat.proc3825162.chain_1733,blat.proc3825162.chain_1734,blat.proc3825162.chain_1736	6
scaffold_9	spliced_intron	16738714	16738866	-	asmbl_55621,asmbl_55624	none	STRG.11819.1,STRG.11819.2,Trinity_GG_6538_c0_g1_i1,blat.proc3825154.chain_307	4	Trinity_GG_6538_c0_g1_i3,Trinity_GG_6538_c0_g1_i4,blat.proc3825154.chain_308,blat.proc3825154.chain_309	4
scaffold_27	retained_intron	975659	975913	+	asmbl_35976	none	blat.proc3825178.chain_1714	1	STRG.28595.1,STRG.28595.4,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i12,Trinity_GG_33133_c0_g1_i4,Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1712,blat.proc3825178.chain_1717,blat.proc3825178.chain_1719,blat.proc3825178.chain_1720	10
scaffold_20	retained_intron	7468719	7468963	-	asmbl_25907,asmbl_25909	none	blat.proc3825160.chain_461,blat.proc3825160.chain_465	2	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_462,blat.proc3825160.chain_466	4
scaffold_5	starts_in_intron	8133490	8133490	+	asmbl_45531	none	Trinity_GG_20684_c0_g1_i2,blat.proc3825166.chain_2390	2	STRG.6188.1,STRG.6188.2,blat.proc3825166.chain_2389,blat.proc3825166.chain_2391,blat.proc3825166.chain_2392	5
scaffold_5	spliced_intron	15043048	15043289	-	asmbl_44633	none	STRG.6698.6,blat.proc3825150.chain_2831	2	STRG.6698.4,STRG.6698.5,blat.proc3825150.chain_2832	3
scaffold_19	alt_acceptor	827111	827112	-	asmbl_22006,asmbl_22007,asmbl_22011	none	STRG.21882.1,STRG.21882.2,STRG.21882.3,STRG.21882.5,blat.proc3825158.chain_2703,blat.proc3825158.chain_2705	6	STRG.21882.4,blat.proc3825158.chain_2702	2
scaffold_4	alt_donor	12629806	12629807	-	asmbl_42938,asmbl_42939,asmbl_42940	none	STRG.4902.2,STRG.4902.3,blat.proc3825150.chain_1038,blat.proc3825150.chain_1040	4	STRG.4902.1,blat.proc3825150.chain_1039	2
scaffold_4	alt_acceptor	4420319	4420320	+	asmbl_41263,asmbl_41264	none	STRG.4340.1,STRG.4340.2,Trinity_GG_19730_c0_g1_i2,Trinity_GG_19730_c0_g1_i3,blat.proc3825166.chain_795,blat.proc3825166.chain_796	6	STRG.4340.3	1
scaffold_9	spliced_intron	16575103	16575191	+	asmbl_54606	none	STRG.11800.2,blat.proc3825170.chain_593	2	STRG.11800.1,blat.proc3825170.chain_594	2
scaffold_4	retained_intron	4498633	4498751	-	asmbl_42520	none	Trinity_GG_2437_c0_g1_i3,blat.proc3825150.chain_589	2	STRG.4352.1,STRG.4352.2,Trinity_GG_2437_c0_g1_i2,blat.proc3825150.chain_588	4
scaffold_8	starts_in_intron	1133960	1133960	+	asmbl_52680	none	Trinity_GG_22681_c0_g1_i1,blat.proc3825168.chain_2206	2	STRG.9752.1,STRG.9752.3	2
scaffold_18	alt_donor	347731	347732	+	asmbl_20295	none	blat.proc3825174.chain_1893	1	STRG.20985.1,STRG.20985.2,blat.proc3825174.chain_1892,blat.proc3825174.chain_1894	4
scaffold_5	alt_donor	8132404	8132405	+	asmbl_45530	none	STRG.6188.1,blat.proc3825166.chain_2391	2	STRG.6188.2,blat.proc3825166.chain_2389,blat.proc3825166.chain_2392	3
scaffold_9	spliced_intron	17851315	17851392	+	asmbl_54654,asmbl_54656,asmbl_54658	none	STRG.11873.1,Trinity_GG_23881_c0_g1_i10,Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_572,blat.proc3825170.chain_573	5	STRG.11873.3	1
scaffold_21	starts_in_intron	3769832	3769832	-	asmbl_27536	none	STRG.23970.2	1	STRG.23970.1	1
scaffold_17	retained_exon	13973355	13973375	-	asmbl_18396	none	STRG.20885.1,blat.proc3825158.chain_1833	2	STRG.20885.3,blat.proc3825158.chain_1834,blat.proc3825158.chain_1835	3
scaffold_7	alt_acceptor	7611435	7611436	-	asmbl_50951	none	STRG.9014.3	1	STRG.9014.1,STRG.9014.2,STRG.9014.4,blat.proc3825152.chain_1361,blat.proc3825152.chain_1363	5
scaffold_1	retained_intron	12334369	12334524	-	asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_706	none	STRG.849.2,Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_831,blat.proc3825148.chain_837	4	blat.proc3825148.chain_829	1
scaffold_2	retained_intron	899505	899602	+	asmbl_24148,asmbl_24151	none	STRG.1569.2,Trinity_GG_18211_c0_g1_i4	2	STRG.1569.1,STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721	5
scaffold_21	alt_acceptor	5253927	5253928	-	asmbl_27629	none	STRG.24058.2	1	STRG.24058.1,blat.proc3825160.chain_1206	2
scaffold_7	alt_acceptor	1162678	1162679	+	asmbl_49578	none	STRG.8630.2	1	STRG.8630.1,blat.proc3825168.chain_1133	2
scaffold_27	starts_in_intron	2997566	2997566	+	asmbl_36155	none	STRG.28786.4	1	STRG.28786.1,STRG.28786.2,STRG.28786.3,blat.proc3825178.chain_1904,blat.proc3825178.chain_1905,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	7
scaffold_14	starts_in_intron	6911294	6911294	+	asmbl_12118	none	Trinity_GG_26741_c0_g1_i2,blat.proc3825172.chain_1905	2	STRG.17132.1,blat.proc3825172.chain_1906	2
scaffold_1	alt_donor	13129399	13129400	-	asmbl_796,asmbl_798	none	STRG.955.1,blat.proc3825148.chain_913,blat.proc3825148.chain_914	3	blat.proc3825148.chain_915	1
scaffold_9	spliced_intron	9657137	9657296	+	asmbl_54218,asmbl_54223,asmbl_54225	none	STRG.11344.1,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_158	4	blat.proc3825170.chain_155,blat.proc3825170.chain_157,blat.proc3825170.chain_160,blat.proc3825170.chain_163	4
scaffold_4	retained_intron	18033877	18033924	-	asmbl_43342	none	STRG.5403.2	1	STRG.5403.1	1
scaffold_3	spliced_intron	14183210	14183724	-	asmbl_39329,asmbl_39330,asmbl_39332	none	STRG.3761.2,STRG.3761.4,Trinity_GG_2073_c0_g1_i7,blat.proc3825148.chain_3665	4	STRG.3761.1,STRG.3761.3,STRG.3761.5,Trinity_GG_2073_c0_g1_i3,blat.proc3825148.chain_3663	5
scaffold_1	retained_exon	18029187	18029281	-	asmbl_1076	none	STRG.1268.7	1	STRG.1268.5	1
scaffold_16	alt_acceptor	9147212	9147213	+	asmbl_16467	none	STRG.19521.1	1	STRG.19521.2	1
scaffold_25	alt_donor	3820401	3820402	-	asmbl_34159	none	Trinity_GG_15320_c0_g1_i3,blat.proc3825162.chain_699	2	Trinity_GG_15320_c0_g1_i1,blat.proc3825162.chain_700	2
scaffold_15	starts_in_intron	12009469	12009469	-	asmbl_14554	none	STRG.18664.2,blat.proc3825156.chain_3537	2	STRG.18664.1,STRG.18664.3,blat.proc3825156.chain_3538,blat.proc3825156.chain_3539,blat.proc3825156.chain_3540,blat.proc3825156.chain_3541,blat.proc3825156.chain_3542	7
scaffold_13	alt_donor	3478921	3478922	+	asmbl_10695	none	STRG.15656.2	1	STRG.15656.1,blat.proc3825172.chain_355	2
scaffold_2	retained_intron	9322568	9323761	-	asmbl_23384	none	STRG.2178.3	1	STRG.2178.2,blat.proc3825148.chain_2159	2
scaffold_17	skipped_exon	6819825	6821051	-	asmbl_17993,asmbl_17994	none	blat.proc3825158.chain_1392,blat.proc3825158.chain_1393	2	STRG.20345.3	1
scaffold_2	retained_intron	7323594	7324003	+	asmbl_24562	none	STRG.2062.1,Trinity_GG_18498_c0_g1_i3,blat.proc3825164.chain_2281	3	STRG.2062.2	1
scaffold_13	retained_exon	7504556	7506114	-	asmbl_9890,asmbl_9893	none	blat.proc3825156.chain_900,blat.proc3825156.chain_906	2	blat.proc3825156.chain_904	1
scaffold_10	spliced_intron	922305	922681	+	asmbl_2879,asmbl_2881	none	STRG.11967.1,blat.proc3825170.chain_665,blat.proc3825170.chain_668,blat.proc3825170.chain_669	4	blat.proc3825170.chain_666	1
scaffold_13	alt_donor	8806838	8806839	-	asmbl_9985,asmbl_9986	none	blat.proc3825156.chain_1070,blat.proc3825156.chain_1072	2	blat.proc3825156.chain_1065,blat.proc3825156.chain_1066,blat.proc3825156.chain_1067	3
scaffold_13	skipped_exon	6884220	6885660	+	asmbl_10992	none	STRG.15980.2,blat.proc3825172.chain_731	2	STRG.15980.1,STRG.15980.3,blat.proc3825172.chain_730,blat.proc3825172.chain_732	4
scaffold_8	alternate_exon	9815858	9817092	+	asmbl_53111	none	STRG.10229.2,blat.proc3825168.chain_2785	2	STRG.10229.3,Trinity_GG_22998_c0_g2_i3,blat.proc3825168.chain_2787	3
scaffold_20	retained_intron	5845709	5845968	-	asmbl_25778	none	STRG.23185.2,Trinity_GG_12929_c0_g1_i1,blat.proc3825160.chain_257,blat.proc3825160.chain_258	4	STRG.23185.1,blat.proc3825160.chain_256	2
scaffold_11	alt_acceptor	335229	335230	+	asmbl_5286	none	STRG.13269.1,blat.proc3825170.chain_1833	2	STRG.13269.2,STRG.13269.3,blat.proc3825170.chain_1831,blat.proc3825170.chain_1834	4
scaffold_1	alt_acceptor	19045903	19045904	+	asmbl_2582	none	STRG.1335.7	1	STRG.1335.1,STRG.1335.5,Trinity_GG_18101_c0_g1_i2	3
scaffold_300	starts_in_intron	3501	3501	+	asmbl_40907	none	Trinity_GG_34067_c0_g1_i1	1	STRG.30272.1,STRG.30272.2,STRG.30272.3,blat.proc3825178.chain_3363,blat.proc3825178.chain_3364,blat.proc3825178.chain_3365,blat.proc3825178.chain_3366	7
scaffold_17	alt_acceptor	10050112	10050113	+	asmbl_19163	none	blat.proc3825174.chain_1496	1	STRG.20618.1,STRG.20618.2,blat.proc3825174.chain_1497,blat.proc3825174.chain_1500	4
scaffold_23	alternate_exon	4311635	4311889	-	asmbl_30858	none	blat.proc3825160.chain_3042	1	blat.proc3825160.chain_3041	1
scaffold_723	starts_in_intron	1927	1927	-	asmbl_51622	none	blat.proc3825162.chain_3546	1	STRG.30450.1,STRG.30450.2,STRG.30450.3,STRG.30450.4,blat.proc3825162.chain_3547,blat.proc3825162.chain_3548,blat.proc3825162.chain_3550	7
scaffold_11	starts_in_intron	5651922	5651922	+	asmbl_5573	none	Trinity_GG_24814_c0_g1_i2,blat.proc3825170.chain_2168	2	STRG.13632.1,blat.proc3825170.chain_2167,blat.proc3825170.chain_2169	3
scaffold_13	spliced_intron	15814218	15814405	+	asmbl_11543	none	STRG.16625.1	1	blat.proc3825172.chain_1359	1
scaffold_9	skipped_exon	16708338	16709158	-	asmbl_55619	none	blat.proc3825154.chain_302	1	STRG.11817.1,STRG.11817.2,blat.proc3825154.chain_303	3
scaffold_13	alt_acceptor	520717	520718	+	asmbl_10485	none	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3	STRG.15449.1,STRG.15449.2,STRG.15449.4,STRG.15449.5,Trinity_GG_25810_c0_g1_i5,blat.proc3825172.chain_179,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_188	10
scaffold_4	alt_acceptor	17580543	17580544	+	asmbl_42062	none	STRG.5347.3	1	STRG.5347.1,STRG.5347.2	2
scaffold_5	starts_in_intron	10853360	10853360	+	asmbl_45704	none	blat.proc3825166.chain_2521	1	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	4
scaffold_8	starts_in_intron	11976532	11976532	-	asmbl_52177	none	Trinity_GG_5731_c0_g1_i2,blat.proc3825152.chain_2546	2	STRG.10396.2,STRG.10396.3,Trinity_GG_5731_c0_g1_i1,blat.proc3825152.chain_2547	4
scaffold_18	retained_exon	1512896	1512941	+	asmbl_20360	none	STRG.21044.3	1	STRG.21044.1,STRG.21044.2,blat.proc3825174.chain_1986	3
scaffold_17	retained_intron	12090439	12090468	+	asmbl_19258	none	STRG.20737.3	1	STRG.20737.2	1
scaffold_5	starts_in_intron	15030917	15030917	-	asmbl_44629	none	blat.proc3825150.chain_2862	1	STRG.6696.1,blat.proc3825150.chain_2861,blat.proc3825150.chain_2863	3
scaffold_8	spliced_intron	4873126	4873930	+	asmbl_52870,asmbl_52872	none	STRG.9952.1,blat.proc3825168.chain_2516,blat.proc3825168.chain_2517	3	STRG.9952.4,Trinity_GG_22853_c0_g1_i4,blat.proc3825168.chain_2514,blat.proc3825168.chain_2515	4
scaffold_16	spliced_intron	787406	787665	+	asmbl_16048,asmbl_16050,asmbl_16052	none	STRG.19056.1,STRG.19056.2,blat.proc3825172.chain_3646,blat.proc3825172.chain_3648	4	blat.proc3825172.chain_3647,blat.proc3825172.chain_3649	2
scaffold_12	alt_donor	4951705	4951706	-	asmbl_8467,asmbl_8469	none	STRG.14666.1,blat.proc3825154.chain_3103,blat.proc3825154.chain_3104	3	STRG.14666.2,blat.proc3825154.chain_3102	2
scaffold_7	alt_acceptor	1236135	1236136	+	asmbl_49605	none	STRG.8637.6	1	STRG.8637.5,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072,blat.proc3825168.chain_1074,blat.proc3825168.chain_1079	8
scaffold_19	ends_in_intron	6684935	6684935	+	asmbl_21430	none	blat.proc3825174.chain_3129	1	STRG.22189.1,Trinity_GG_29526_c0_g1_i1,blat.proc3825174.chain_3124	3
scaffold_15	spliced_intron	4491295	4491494	+	asmbl_15140,asmbl_15142,asmbl_15143,asmbl_15144,asmbl_15145,asmbl_15146,asmbl_15147	none	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2857,blat.proc3825172.chain_2858,blat.proc3825172.chain_2859	9	blat.proc3825172.chain_2853	1
scaffold_18	alt_donor	13654441	13654442	-	asmbl_20180,asmbl_20182	none	STRG.21800.1,blat.proc3825158.chain_2602,blat.proc3825158.chain_2603	3	STRG.21800.2	1
scaffold_24	retained_intron	2514768	2515066	+	asmbl_32102	none	STRG.26469.3,blat.proc3825176.chain_3421	2	STRG.26469.1,STRG.26469.2,blat.proc3825176.chain_3422	3
scaffold_5	spliced_intron	5045141	5046460	+	asmbl_45326,asmbl_45331	none	STRG.5958.1,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126	3	STRG.5958.4,blat.proc3825166.chain_2128,blat.proc3825166.chain_2129	3
scaffold_2	skipped_exon	2986713	2987932	+	asmbl_24265	none	STRG.1735.2,Trinity_GG_18303_c1_g1_i2,blat.proc3825164.chain_1909	3	STRG.1735.1,Trinity_GG_18303_c1_g1_i1,blat.proc3825164.chain_1908	3
scaffold_15	starts_in_intron	9574201	9574201	-	asmbl_14383	none	blat.proc3825156.chain_3280	1	STRG.18476.1,blat.proc3825156.chain_3281	2
scaffold_28	retained_exon	7234355	7234547	+	asmbl_37643	none	STRG.29785.1,blat.proc3825178.chain_2930	2	STRG.29785.3	1
scaffold_10	alt_donor	918468	918469	+	asmbl_2879,asmbl_2882,asmbl_2883	none	STRG.11967.1,blat.proc3825170.chain_666,blat.proc3825170.chain_667,blat.proc3825170.chain_668,blat.proc3825170.chain_669	5	STRG.11967.2,blat.proc3825170.chain_665	2
scaffold_15	alternate_exon	5457696	5457903	-	asmbl_14208	none	STRG.18235.2,blat.proc3825156.chain_3103	2	blat.proc3825156.chain_3104	1
scaffold_21	retained_intron	6129614	6129688	+	asmbl_28618	none	STRG.24150.2,blat.proc3825176.chain_1341	2	STRG.24150.1,Trinity_GG_30687_c0_g1_i2,blat.proc3825176.chain_1342,blat.proc3825176.chain_1343	4
scaffold_17	alt_donor	8317934	8317935	+	asmbl_18965,asmbl_18968,asmbl_18969,asmbl_18971,asmbl_18972	none	STRG.20456.3,STRG.20456.4,STRG.20456.5,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1203	6	STRG.20456.6	1
scaffold_26	ends_in_intron	5777498	5777498	-	asmbl_35624	none	Trinity_GG_15822_c2_g1_i1,blat.proc3825162.chain_1508	2	STRG.28278.1,blat.proc3825162.chain_1506	2
scaffold_20	starts_in_intron	11477235	11477235	+	asmbl_27050	none	Trinity_GG_30401_c0_g1_i2,blat.proc3825176.chain_841	2	STRG.23651.1,Trinity_GG_30401_c0_g1_i1,blat.proc3825176.chain_840	3
scaffold_19	alt_donor	625386	625387	-	asmbl_21988,asmbl_21989	none	STRG.21845.2,STRG.21845.3	2	STRG.21845.1,blat.proc3825158.chain_2686	2
scaffold_4	starts_in_intron	16570511	16570511	-	asmbl_43196	none	STRG.5232.2	1	STRG.5232.1,blat.proc3825150.chain_1414	2
scaffold_2	retained_intron	5360023	5360118	+	asmbl_24414	none	STRG.1943.2,blat.proc3825164.chain_2063	2	STRG.1943.1,blat.proc3825164.chain_2064	2
scaffold_26	spliced_intron	5945016	5945154	-	asmbl_35653	none	STRG.28306.3	1	STRG.28306.1,Trinity_GG_15823_c1_g1_i2,blat.proc3825162.chain_1510	3
scaffold_8	spliced_intron	2655012	2655188	-	asmbl_51713	none	STRG.9802.1,blat.proc3825152.chain_2055	2	STRG.9802.2,blat.proc3825152.chain_2054	2
scaffold_1	alt_donor	9196544	9196545	+	asmbl_1960,asmbl_1961	none	STRG.610.1,STRG.610.3,Trinity_GG_17701_c0_g1_i1,blat.proc3825164.chain_756	4	STRG.610.2,Trinity_GG_17701_c0_g1_i2,blat.proc3825164.chain_757	3
scaffold_13	retained_intron	14015268	14015390	-	asmbl_10168	none	blat.proc3825156.chain_1323	1	blat.proc3825156.chain_1324,blat.proc3825156.chain_1326	2
scaffold_6	spliced_intron	8475432	8475513	-	asmbl_48560	none	STRG.7720.1,blat.proc3825152.chain_30	2	STRG.7720.2	1
scaffold_22	starts_in_intron	4357514	4357514	+	asmbl_29985	none	STRG.24857.3,blat.proc3825176.chain_1961	2	STRG.24857.1,STRG.24857.2,blat.proc3825176.chain_1962,blat.proc3825176.chain_1963,blat.proc3825176.chain_1964	5
scaffold_12	retained_intron	7974105	7974222	+	asmbl_7807	none	STRG.14862.3	1	STRG.14862.1,blat.proc3825170.chain_3413,blat.proc3825170.chain_3415,blat.proc3825170.chain_3417	4
scaffold_18	alternate_exon	1751292	1751402	-	asmbl_19642,asmbl_19643	none	STRG.21065.1,blat.proc3825158.chain_1948,blat.proc3825158.chain_1949	3	blat.proc3825158.chain_1950	1
scaffold_10	alternate_exon	10429431	10430937	-	asmbl_4731,asmbl_4732	none	STRG.12731.1,STRG.12731.3,Trinity_GG_7118_c0_g1_i3,blat.proc3825154.chain_1336,blat.proc3825154.chain_1337	5	STRG.12731.2,Trinity_GG_7118_c0_g1_i2,blat.proc3825154.chain_1335	3
scaffold_14	ends_in_intron	13224522	13224522	+	asmbl_12464,asmbl_12466,asmbl_12467,asmbl_12468,asmbl_12469	none	STRG.17622.1,STRG.17622.3,STRG.17622.4,blat.proc3825172.chain_2330,blat.proc3825172.chain_2332,blat.proc3825172.chain_2335	6	STRG.17622.2,blat.proc3825172.chain_2329	2
scaffold_15	spliced_intron	6961759	6962168	+	asmbl_15268,asmbl_15269	none	STRG.18305.1,blat.proc3825172.chain_2906	2	Trinity_GG_27305_c0_g1_i2,blat.proc3825172.chain_2907	2
scaffold_1	retained_intron	3270497	3270864	-	asmbl_141,asmbl_143	none	STRG.204.4,blat.proc3825148.chain_202	2	STRG.204.2,STRG.204.3	2
scaffold_13	spliced_intron	9997163	9997360	-	asmbl_10047	none	STRG.16241.1,blat.proc3825156.chain_1094	2	STRG.16241.2,blat.proc3825156.chain_1095	2
scaffold_17	retained_exon	604457	604498	-	asmbl_17630,asmbl_17631,asmbl_17632	none	STRG.19912.2,STRG.19912.3,STRG.19912.4	3	STRG.19912.1	1
scaffold_6	retained_exon	8172829	8172944	-	asmbl_48538,asmbl_48543,asmbl_48544,asmbl_48545	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_91,blat.proc3825152.chain_92	5	blat.proc3825152.chain_93	1
scaffold_14	alternate_exon	13599930	13599975	+	asmbl_12484	none	STRG.17648.1	1	STRG.17648.2,blat.proc3825172.chain_2301	2
scaffold_1	spliced_intron	17725231	17725595	+	asmbl_2528	none	STRG.1244.1,Trinity_GG_18025_c0_g1_i2,blat.proc3825164.chain_1366	3	STRG.1244.2,Trinity_GG_18025_c0_g1_i1,Trinity_GG_18025_c0_g1_i3,blat.proc3825164.chain_1364,blat.proc3825164.chain_1365	5
scaffold_14	ends_in_intron	326751	326751	-	asmbl_12825	none	STRG.16724.3	1	STRG.16724.1,STRG.16724.2,Trinity_GG_9360_c0_g1_i2,blat.proc3825156.chain_1549	4
scaffold_10	alternate_exon	9070613	9070845	-	asmbl_4672	none	STRG.12658.3,blat.proc3825154.chain_1159	2	STRG.12658.1,STRG.12658.2,blat.proc3825154.chain_1160	3
scaffold_13	alt_donor	2274819	2274820	-	asmbl_9447	none	STRG.15548.5	1	STRG.15548.1,blat.proc3825156.chain_398	2
scaffold_6	starts_in_intron	11741128	11741128	+	asmbl_47361	none	Trinity_GG_21671_c0_g1_i1,blat.proc3825168.chain_407	2	STRG.7967.1	1
scaffold_14	alt_donor	9654653	9654654	-	asmbl_13389	none	STRG.17354.1,blat.proc3825156.chain_2104	2	blat.proc3825156.chain_2105	1
scaffold_13	spliced_intron	7217965	7218248	+	asmbl_11023	none	blat.proc3825172.chain_811	1	blat.proc3825172.chain_814,blat.proc3825172.chain_816	2
scaffold_692	starts_in_intron	550	550	+	asmbl_49524	none	Trinity_GG_34138_c0_g1_i1,blat.proc3825178.chain_3491	2	STRG.30430.1	1
scaffold_23	starts_in_intron	5845378	5845378	-	asmbl_30948	none	Trinity_GG_14535_c0_g1_i2,blat.proc3825160.chain_3138	2	STRG.25955.1,Trinity_GG_14535_c0_g1_i1,blat.proc3825160.chain_3137	3
scaffold_10	skipped_exon	17683194	17684814	+	asmbl_3789	none	STRG.13220.2	1	STRG.13220.1	1
scaffold_5	spliced_intron	18981494	18981592	+	asmbl_46297	none	STRG.7013.1,Trinity_GG_21123_c0_g1_i2,blat.proc3825166.chain_3134	3	Trinity_GG_21123_c0_g1_i1,blat.proc3825166.chain_3133	2
scaffold_19	retained_exon	6407888	6408830	-	asmbl_22215	none	STRG.22169.3,blat.proc3825158.chain_3005	2	STRG.22169.1,blat.proc3825158.chain_3002	2
scaffold_1	spliced_intron	8644831	8644990	-	asmbl_466,asmbl_468	none	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_585	3	blat.proc3825148.chain_581,blat.proc3825148.chain_582,blat.proc3825148.chain_584,blat.proc3825148.chain_586	4
scaffold_17	alternate_exon	11036215	11036284	-	asmbl_18264	none	blat.proc3825158.chain_1638	1	STRG.20664.3	1
scaffold_27	spliced_intron	314278	314458	-	asmbl_36658,asmbl_36660,asmbl_36661,asmbl_36662,asmbl_36663	none	STRG.28557.1,STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1728	5	STRG.28557.2,Trinity_GG_15948_c0_g1_i7	2
scaffold_18	skipped_exon	12609003	12609670	-	asmbl_20159	none	STRG.21724.2,blat.proc3825158.chain_2614	2	STRG.21724.1	1
scaffold_8	spliced_intron	7483592	7484153	-	asmbl_51911,asmbl_51915	none	STRG.10078.1,blat.proc3825152.chain_2256,blat.proc3825152.chain_2259	3	Trinity_GG_5574_c0_g1_i5,blat.proc3825152.chain_2255	2
scaffold_18	alt_acceptor	180031	180032	+	asmbl_20270	none	blat.proc3825174.chain_1895	1	STRG.20973.1,blat.proc3825174.chain_1897,blat.proc3825174.chain_1898	3
scaffold_14	alternate_exon	15945168	15946417	+	asmbl_12653	none	STRG.17840.3,blat.proc3825172.chain_2565	2	STRG.17840.1,STRG.17840.2	2
scaffold_7	retained_intron	4915680	4915757	+	asmbl_49759,asmbl_49761	none	STRG.8836.1,STRG.8836.2,blat.proc3825168.chain_1316	3	STRG.8836.3	1
scaffold_3	skipped_exon	5951042	5951658	-	asmbl_38878,asmbl_38883	none	STRG.3259.4,STRG.3259.5,blat.proc3825148.chain_3162	3	STRG.3259.1,STRG.3259.3,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3165	5
scaffold_16	starts_in_intron	10104652	10104652	+	asmbl_16520	none	blat.proc3825174.chain_481	1	STRG.19593.1,STRG.19593.2,blat.proc3825174.chain_480	3
scaffold_6	retained_exon	18922548	18922655	-	asmbl_49293	none	STRG.8564.1,blat.proc3825152.chain_993	2	STRG.8564.3	1
scaffold_9	alt_acceptor	9656874	9656875	+	asmbl_54223,asmbl_54224,asmbl_54225,asmbl_54226	none	STRG.11344.2,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_157	4	blat.proc3825170.chain_160,blat.proc3825170.chain_163	2
scaffold_26	spliced_intron	5043449	5043773	+	asmbl_34937,asmbl_34943,asmbl_34948,asmbl_34949,asmbl_34950,asmbl_34951,asmbl_34952,asmbl_34954,asmbl_34955,asmbl_34957	none	STRG.28240.1,blat.proc3825176.chain_2465,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1169,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180	12	blat.proc3825176.chain_2466,blat.proc3825178.chain_1172	2
scaffold_24	retained_intron	10422912	10423124	+	asmbl_32559,asmbl_32560	none	Trinity_GG_32235_c0_g1_i2,blat.proc3825178.chain_216,blat.proc3825178.chain_217	3	STRG.27007.1,blat.proc3825178.chain_215	2
scaffold_24	spliced_intron	6445291	6445510	+	asmbl_32315	none	blat.proc3825176.chain_3620	1	Trinity_GG_32056_c0_g1_i14,blat.proc3825176.chain_3611,blat.proc3825176.chain_3616	3
scaffold_3026	retained_intron	362	614	+	asmbl_40912	none	STRG.30816.2,blat.proc3825178.chain_3715	2	STRG.30816.3	1
scaffold_20	alternate_exon	5944314	5944395	-	asmbl_25801	none	blat.proc3825160.chain_221	1	STRG.23202.1,blat.proc3825160.chain_220	2
scaffold_9	retained_intron	16558842	16561320	-	asmbl_55580,asmbl_55581	none	STRG.11806.3,STRG.11806.6,Trinity_GG_6524_c0_g2_i1,Trinity_GG_6524_c0_g2_i2,Trinity_GG_6524_c2_g1_i1,blat.proc3825154.chain_275,blat.proc3825154.chain_276,blat.proc3825154.chain_278	8	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7
scaffold_25	alt_donor	5827634	5827635	-	asmbl_34287,asmbl_34288,asmbl_34290,asmbl_34291,asmbl_34296	none	STRG.27479.1,STRG.27479.2,STRG.27479.4,blat.proc3825162.chain_876,blat.proc3825162.chain_877	5	STRG.27479.3,blat.proc3825162.chain_878	2
scaffold_12	retained_intron	12341400	12341510	-	asmbl_8875	none	Trinity_GG_8455_c0_g1_i2,blat.proc3825154.chain_3643	2	STRG.15142.1,blat.proc3825154.chain_3644,blat.proc3825154.chain_3645	3
scaffold_5	alt_donor	4866436	4866437	+	asmbl_45307	none	STRG.5946.1,Trinity_GG_20566_c0_g1_i4,blat.proc3825166.chain_2170	3	STRG.5946.2,blat.proc3825166.chain_2172	2
scaffold_21	skipped_exon	10250005	10251788	-	asmbl_28015	none	STRG.24486.2,Trinity_GG_13668_c0_g1_i2,blat.proc3825160.chain_1654	3	STRG.24486.1,Trinity_GG_13668_c0_g1_i1,blat.proc3825160.chain_1655	3
scaffold_24	alternate_exon	4454034	4454151	+	asmbl_32201	none	STRG.26606.1	1	STRG.26606.2,blat.proc3825176.chain_3500,blat.proc3825176.chain_3501	3
scaffold_11	retained_exon	11571943	11572610	-	asmbl_7022	none	STRG.14084.1	1	STRG.14084.2	1
scaffold_15	alt_donor	4117870	4117871	-	asmbl_14123	none	STRG.18155.2,blat.proc3825156.chain_2939	2	STRG.18155.4	1
scaffold_11	starts_in_intron	11997287	11997287	-	asmbl_7058	none	blat.proc3825154.chain_2670	1	STRG.14126.1,STRG.14126.2,STRG.14126.3,STRG.14126.4,Trinity_GG_7897_c0_g1_i1,Trinity_GG_7897_c0_g1_i2,Trinity_GG_7897_c0_g1_i4,Trinity_GG_7897_c0_g1_i5,blat.proc3825154.chain_2669,blat.proc3825154.chain_2671,blat.proc3825154.chain_2672,blat.proc3825154.chain_2673	12
scaffold_14	alt_donor	1377484	1377485	-	asmbl_12875,asmbl_12878	none	STRG.16791.1,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625	3	STRG.16791.2	1
scaffold_3	retained_intron	7727603	7727817	+	asmbl_40176	none	blat.proc3825164.chain_3638	1	STRG.3360.1,blat.proc3825164.chain_3637	2
scaffold_3	starts_in_intron	17364015	17364015	-	asmbl_39553	none	blat.proc3825150.chain_180	1	STRG.3971.1,STRG.3971.2,STRG.3971.4,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_179,blat.proc3825150.chain_181,blat.proc3825150.chain_182,blat.proc3825150.chain_183,blat.proc3825150.chain_184,blat.proc3825150.chain_185	12
scaffold_9	retained_intron	12438282	12438337	+	asmbl_54431	none	STRG.11558.1,Trinity_GG_23767_c0_g1_i1,blat.proc3825170.chain_378	3	STRG.11558.2	1
scaffold_1	alt_acceptor	14430175	14430176	+	asmbl_2396	none	STRG.1046.2	1	STRG.1046.1,STRG.1046.3,blat.proc3825164.chain_1218,blat.proc3825164.chain_1219,blat.proc3825164.chain_1220	5
scaffold_28	starts_in_intron	9681174	9681174	+	asmbl_37803	none	blat.proc3825178.chain_3139	1	STRG.29999.1,blat.proc3825178.chain_3138,blat.proc3825178.chain_3140	3
scaffold_5	retained_exon	11913811	11913879	+	asmbl_45771	none	STRG.6447.2,blat.proc3825166.chain_2651	2	STRG.6447.1,blat.proc3825166.chain_2650	2
scaffold_17	spliced_intron	2720917	2721238	+	asmbl_18693,asmbl_18694	none	STRG.20072.1,STRG.20072.2,Trinity_GG_28282_c0_g1_i2,blat.proc3825174.chain_904	4	STRG.20072.3,Trinity_GG_28282_c0_g1_i1,blat.proc3825174.chain_905	3
scaffold_6	retained_intron	17672230	17672360	+	asmbl_47772,asmbl_47773	none	Trinity_GG_21933_c0_g1_i2,Trinity_GG_21933_c0_g1_i6,blat.proc3825168.chain_865,blat.proc3825168.chain_867	4	STRG.8462.1,STRG.8462.2,STRG.8462.3,Trinity_GG_21933_c0_g1_i5,Trinity_GG_21933_c0_g1_i7,blat.proc3825168.chain_866,blat.proc3825168.chain_868,blat.proc3825168.chain_869,blat.proc3825168.chain_871	9
scaffold_19	alt_donor	12958375	12958376	-	asmbl_22564,asmbl_22566	none	Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3404	4	STRG.22612.1	1
scaffold_3	ends_in_intron	78640	78640	+	asmbl_39806	none	STRG.2890.2	1	STRG.2890.1,Trinity_GG_18959_c0_g1_i1	2
scaffold_11	alt_donor	1156522	1156523	+	asmbl_5325,asmbl_5326	none	Trinity_GG_24584_c0_g1_i1,Trinity_GG_24584_c0_g1_i5,blat.proc3825170.chain_1777,blat.proc3825170.chain_1778	4	STRG.13311.1,Trinity_GG_24584_c0_g1_i2,blat.proc3825170.chain_1776	3
scaffold_6	spliced_intron	10898864	10899075	+	asmbl_47304,asmbl_47305,asmbl_47308	none	STRG.7907.1,STRG.7907.3,Trinity_GG_21655_c0_g1_i1,blat.proc3825168.chain_379,blat.proc3825168.chain_381,blat.proc3825168.chain_382	6	STRG.7907.2,Trinity_GG_21655_c0_g1_i5,blat.proc3825168.chain_380	3
scaffold_13	retained_intron	8952103	8952193	-	asmbl_10004	none	blat.proc3825156.chain_1077	1	STRG.16166.1,STRG.16166.2,blat.proc3825156.chain_1078,blat.proc3825156.chain_1079	4
scaffold_9	retained_exon	8395320	8395340	+	asmbl_54171	none	blat.proc3825170.chain_62	1	STRG.11261.3,blat.proc3825170.chain_63	2
scaffold_23	ends_in_intron	3595955	3595955	+	asmbl_31452	none	blat.proc3825176.chain_2722	1	STRG.25780.1	1
scaffold_27	spliced_intron	6782460	6782627	-	asmbl_37084	none	blat.proc3825162.chain_2277	1	Trinity_GG_16292_c0_g1_i1,blat.proc3825162.chain_2275	2
scaffold_2	spliced_intron	13330650	13331324	+	asmbl_24831,asmbl_24832	none	STRG.2344.2,STRG.2344.3,blat.proc3825164.chain_2553,blat.proc3825164.chain_2554	4	STRG.2344.1,STRG.2344.5,blat.proc3825164.chain_2555	3
scaffold_15	alt_donor	5457803	5457804	-	asmbl_14209,asmbl_14214	none	STRG.18235.1,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	3	STRG.18235.2,blat.proc3825156.chain_3103	2
scaffold_25	spliced_intron	5377112	5377334	-	asmbl_34253	none	STRG.27450.2,blat.proc3825162.chain_816	2	STRG.27450.1,Trinity_GG_15394_c0_g1_i1,blat.proc3825162.chain_815	3
scaffold_18	alternate_exon	6778654	6778817	-	asmbl_19917	none	STRG.21382.2	1	STRG.21382.1,blat.proc3825158.chain_2318	2
scaffold_9	alternate_exon	17583155	17583238	-	asmbl_55658	none	STRG.11844.2	1	STRG.11844.1	1
scaffold_8	ends_in_intron	9468096	9468096	-	asmbl_52041	none	blat.proc3825152.chain_2504	1	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	6
scaffold_12	alt_acceptor	8325307	8325308	+	asmbl_7816	none	STRG.14866.1,blat.proc3825170.chain_3447	2	STRG.14866.2	1
scaffold_1	alt_donor	13885336	13885337	+	asmbl_2320,asmbl_2324,asmbl_2325,asmbl_2326	none	STRG.997.2,STRG.997.4,blat.proc3825164.chain_1166,blat.proc3825164.chain_1167,blat.proc3825164.chain_1169	5	STRG.997.1,STRG.997.3,blat.proc3825164.chain_1165,blat.proc3825164.chain_1168	4
scaffold_6	spliced_intron	8460271	8460401	+	asmbl_47127	none	STRG.7725.2,blat.proc3825168.chain_153	2	STRG.7725.1,STRG.7725.4,blat.proc3825168.chain_154	3
scaffold_5	ends_in_intron	19031420	19031420	-	asmbl_44888,asmbl_44890	none	STRG.7022.6,Trinity_GG_3910_c0_g1_i11,blat.proc3825150.chain_3129,blat.proc3825150.chain_3135	4	STRG.7022.2,STRG.7022.4,STRG.7022.5,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133	5
scaffold_11	retained_exon	2777999	2778022	+	asmbl_5378	none	STRG.13405.2,blat.proc3825170.chain_1943	2	STRG.13405.1,blat.proc3825170.chain_1944	2
scaffold_28	alternate_exon	5755577	5755618	-	asmbl_38321	none	STRG.29715.2	1	STRG.29715.1,Trinity_GG_16672_c0_g1_i1,blat.proc3825162.chain_2911	3
scaffold_17	retained_intron	7054908	7055141	-	asmbl_18030	none	blat.proc3825158.chain_1356	1	STRG.20371.1,blat.proc3825158.chain_1357	2
scaffold_24	ends_in_intron	6800803	6800803	-	asmbl_32982	none	Trinity_GG_14947_c0_g1_i3,blat.proc3825162.chain_90	2	STRG.26730.1,STRG.26730.2,STRG.26730.3,blat.proc3825162.chain_89,blat.proc3825162.chain_91,blat.proc3825162.chain_93	6
scaffold_22	spliced_intron	9399585	9399781	+	asmbl_30306	none	STRG.25284.3	1	STRG.25284.1	1
scaffold_23	alt_donor	5339870	5339871	-	asmbl_30908	none	blat.proc3825160.chain_3099	1	STRG.25911.1,blat.proc3825160.chain_3100,blat.proc3825160.chain_3101	3
scaffold_17	spliced_intron	13962267	13962296	-	asmbl_18394,asmbl_18395	none	STRG.20883.1,STRG.20883.2	2	STRG.20883.3,Trinity_GG_11686_c1_g1_i1,blat.proc3825158.chain_1799,blat.proc3825158.chain_1800	4
scaffold_3	ends_in_intron	12455815	12455815	-	asmbl_39211	none	blat.proc3825148.chain_3506	1	STRG.3643.1,blat.proc3825148.chain_3507	2
scaffold_25	starts_in_intron	689172	689172	+	asmbl_33350	none	blat.proc3825178.chain_238	1	STRG.27123.1	1
scaffold_14	retained_intron	1178420	1178543	+	asmbl_11815	none	STRG.16774.2,Trinity_GG_26511_c0_g1_i4,blat.proc3825172.chain_1483	3	STRG.16774.1,Trinity_GG_26511_c0_g1_i3,blat.proc3825172.chain_1481	3
scaffold_11	retained_intron	6252706	6253377	+	asmbl_5618	none	STRG.13692.3,Trinity_GG_24860_c1_g1_i1	2	STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237,blat.proc3825170.chain_2242	4
scaffold_24	alt_acceptor	8643354	8643355	+	asmbl_32429	none	STRG.26874.1,blat.proc3825178.chain_68	2	STRG.26874.2	1
scaffold_25	alt_donor	3238658	3238659	-	asmbl_34115	none	STRG.27265.1	1	STRG.27265.2	1
scaffold_8	alt_acceptor	8747360	8747361	+	asmbl_53035,asmbl_53036	none	STRG.10133.2,blat.proc3825168.chain_2692	2	STRG.10133.1,blat.proc3825168.chain_2691	2
scaffold_2	ends_in_intron	7215264	7215264	+	asmbl_24542,asmbl_24548	none	STRG.2054.3,Trinity_GG_18495_c0_g1_i5,Trinity_GG_18495_c0_g1_i8,blat.proc3825164.chain_2272,blat.proc3825164.chain_2273	5	STRG.2054.1,STRG.2054.2,Trinity_GG_18495_c0_g1_i7,blat.proc3825164.chain_2268,blat.proc3825164.chain_2274	5
scaffold_11	alt_donor	4751643	4751644	+	asmbl_5515	none	STRG.13573.1,blat.proc3825170.chain_2102	2	STRG.13573.2	1
scaffold_18	spliced_intron	2050891	2050940	-	asmbl_19692	none	STRG.21094.2	1	Trinity_GG_11827_c1_g1_i2,blat.proc3825158.chain_2075	2
scaffold_4	alt_acceptor	19348476	19348477	-	asmbl_43432	none	STRG.5517.1	1	STRG.5517.2	1
scaffold_26	alternate_exon	1322047	1324625	-	asmbl_35401	none	STRG.27913.3	1	STRG.27913.4	1
scaffold_18	alternate_exon	8593264	8593474	+	asmbl_20849	none	STRG.21525.3	1	STRG.21525.2	1
scaffold_3	starts_in_intron	5865850	5865850	+	asmbl_40086	none	blat.proc3825164.chain_3421	1	STRG.3248.1,blat.proc3825164.chain_3422	2
scaffold_1	ends_in_intron	60579	60579	-	asmbl_9	none	Trinity_GG_13_c1_g1_i1,blat.proc3825148.chain_31	2	STRG.2.1,blat.proc3825148.chain_30	2
scaffold_24	alt_donor	1946665	1946666	-	asmbl_32757	none	STRG.26421.2	1	STRG.26421.1,STRG.26421.3,STRG.26421.4	3
scaffold_4	retained_intron	8746286	8746309	+	asmbl_41576	none	blat.proc3825166.chain_1121	1	STRG.4690.1	1
scaffold_15	retained_exon	4983131	4983625	-	asmbl_14183	none	STRG.18211.4	1	STRG.18211.1,STRG.18211.3,blat.proc3825156.chain_3072	3
scaffold_8	ends_in_intron	6121105	6121105	+	asmbl_52946	none	Trinity_GG_22863_c0_g1_i3	1	STRG.10015.1,STRG.10015.3,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	4
scaffold_28	ends_in_intron	5232901	5232901	-	asmbl_38273,asmbl_38274	none	blat.proc3825162.chain_2781,blat.proc3825162.chain_2786	2	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2780,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	6
scaffold_7	skipped_exon	5423446	5425938	-	asmbl_50886	none	STRG.8876.1	1	STRG.8876.2	1
scaffold_10	starts_in_intron	12128631	12128631	+	asmbl_3529	none	STRG.12845.2	1	STRG.12845.1	1
scaffold_19	alternate_exon	3174617	3174690	-	asmbl_22087	none	STRG.22001.1,Trinity_GG_12272_c0_g1_i1	2	STRG.22001.2,blat.proc3825158.chain_2836	2
scaffold_3	ends_in_intron	18336142	18336142	-	asmbl_39612	none	Trinity_GG_2228_c0_g1_i2,blat.proc3825150.chain_215	2	STRG.4037.1	1
scaffold_24	alt_donor	1078656	1078657	+	asmbl_32066	none	STRG.26383.1,blat.proc3825176.chain_3364	2	STRG.26383.3,blat.proc3825176.chain_3365	2
scaffold_25	alternate_exon	8707662	8710378	+	asmbl_33752,asmbl_33753	none	STRG.27702.1,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_763,blat.proc3825178.chain_768	4	blat.proc3825178.chain_769	1
scaffold_8	alternate_exon	11635057	11635243	-	asmbl_52150	none	STRG.10374.2,blat.proc3825152.chain_2597	2	STRG.10374.1,STRG.10374.3,blat.proc3825152.chain_2598	3
scaffold_8	retained_intron	12625677	12626028	-	asmbl_52214,asmbl_52215	none	blat.proc3825152.chain_2675,blat.proc3825152.chain_2676	2	STRG.10437.1,blat.proc3825152.chain_2673,blat.proc3825152.chain_2674	3
scaffold_24	retained_exon	9074801	9074842	+	asmbl_32497	none	STRG.26950.2	1	STRG.26950.1,Trinity_GG_32214_c0_g1_i3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i6,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_148,blat.proc3825178.chain_149,blat.proc3825178.chain_150,blat.proc3825178.chain_151	9
scaffold_19	alt_acceptor	3191588	3191589	+	asmbl_21305	none	STRG.22006.1,Trinity_GG_29480_c0_g1_i2,blat.proc3825174.chain_3032	3	STRG.22006.2	1
scaffold_14	retained_intron	15345450	15346877	-	asmbl_13714	none	STRG.17765.2	1	STRG.17765.3,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2610	3
scaffold_6	starts_in_intron	3052622	3052622	+	asmbl_46799	none	Trinity_GG_21338_c0_g2_i1,blat.proc3825166.chain_3528	2	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4
scaffold_13	spliced_intron	16436550	16436943	+	asmbl_11577,asmbl_11578	none	STRG.16696.1,Trinity_GG_26477_c0_g1_i2,Trinity_GG_26477_c0_g1_i5,blat.proc3825172.chain_1425,blat.proc3825172.chain_1426	5	STRG.16696.2,blat.proc3825172.chain_1427	2
scaffold_1	alternate_exon	1326129	1326180	+	asmbl_1474	none	STRG.78.1	1	STRG.78.2,blat.proc3825164.chain_194	2
scaffold_15	spliced_intron	15409801	15410185	+	asmbl_15768	none	STRG.18930.3,blat.proc3825172.chain_3586	2	STRG.18930.4,blat.proc3825172.chain_3591	2
scaffold_23	alt_donor	10938393	10938394	-	asmbl_31175,asmbl_31178	none	STRG.26299.1,STRG.26299.2	2	STRG.26299.3,blat.proc3825160.chain_3415	2
scaffold_7	spliced_intron	15595021	15595243	+	asmbl_50446	none	STRG.9560.2,Trinity_GG_22613_c0_g1_i1,blat.proc3825168.chain_2062	3	STRG.9560.1,blat.proc3825168.chain_2061	2
scaffold_21	alt_acceptor	7318303	7318304	+	asmbl_28723	none	STRG.24254.2	1	STRG.24254.1,blat.proc3825176.chain_1458	2
scaffold_1	retained_intron	1909884	1910238	+	asmbl_1516	none	STRG.119.3,Trinity_GG_17362_c0_g1_i4,blat.proc3825164.chain_171	3	STRG.119.1,blat.proc3825164.chain_170,blat.proc3825164.chain_172	3
scaffold_23	alternate_exon	4101046	4101265	-	asmbl_30830	none	blat.proc3825160.chain_3030	1	STRG.25826.2,STRG.25826.3,blat.proc3825160.chain_3031,blat.proc3825160.chain_3032	4
scaffold_7	ends_in_intron	8296115	8296115	-	asmbl_50998	none	Trinity_GG_5116_c0_g1_i4,blat.proc3825152.chain_1455	2	STRG.9066.1,STRG.9066.2,STRG.9066.3,STRG.9066.4,blat.proc3825152.chain_1452,blat.proc3825152.chain_1453,blat.proc3825152.chain_1454,blat.proc3825152.chain_1457	8
scaffold_13	ends_in_intron	6433078	6433078	-	asmbl_9787	none	Trinity_GG_8977_c0_g2_i1,blat.proc3825156.chain_851	2	STRG.15943.2	1
scaffold_17	retained_exon	2358163	2358219	+	asmbl_18639,asmbl_18640	none	STRG.20030.2,STRG.20030.7	2	STRG.20030.4,STRG.20030.5,STRG.20030.6	3
scaffold_1	starts_in_intron	5706353	5706353	+	asmbl_1754	none	Trinity_GG_17559_c0_g1_i5,blat.proc3825164.chain_499	2	STRG.372.1,blat.proc3825164.chain_496,blat.proc3825164.chain_497,blat.proc3825164.chain_498,blat.proc3825164.chain_500	5
scaffold_8	ends_in_intron	17285008	17285008	-	asmbl_52442	none	Trinity_GG_5894_c5_g1_i1,blat.proc3825152.chain_2864	2	STRG.10651.1,blat.proc3825152.chain_2857,blat.proc3825152.chain_2859	3
scaffold_21	retained_exon	8131428	8131454	-	asmbl_27891,asmbl_27892,asmbl_27895	none	STRG.24349.5,blat.proc3825160.chain_1508,blat.proc3825160.chain_1509,blat.proc3825160.chain_1512	4	blat.proc3825160.chain_1511	1
scaffold_19	alt_acceptor	623988	623989	-	asmbl_21987,asmbl_21989	none	STRG.21845.1,STRG.21845.3,blat.proc3825158.chain_2686	3	STRG.21845.2	1
scaffold_27	alt_donor	6268808	6268809	-	asmbl_37050	none	STRG.29018.2	1	STRG.29018.1,blat.proc3825162.chain_2245	2
scaffold_18	retained_intron	4071656	4072114	-	asmbl_19788	none	STRG.21204.2,blat.proc3825158.chain_2168	2	STRG.21204.3	1
scaffold_1	skipped_exon	6283222	6283902	-	asmbl_338,asmbl_339,asmbl_345	none	STRG.423.2,blat.proc3825148.chain_410,blat.proc3825148.chain_411	3	STRG.423.1,STRG.423.3,blat.proc3825148.chain_414,blat.proc3825148.chain_418	4
scaffold_12	retained_exon	13031511	13031581	-	asmbl_8902	none	blat.proc3825154.chain_3690	1	STRG.15189.1,STRG.15189.2,STRG.15189.3,blat.proc3825154.chain_3688	4
scaffold_12	alt_acceptor	7172227	7172228	+	asmbl_7722	none	blat.proc3825170.chain_3303	1	STRG.14794.1	1
scaffold_4	ends_in_intron	6339830	6339830	+	asmbl_41401	none	blat.proc3825166.chain_950	1	STRG.4504.1,STRG.4504.2,blat.proc3825166.chain_949	3
scaffold_10	alt_acceptor	6000723	6000724	+	asmbl_3214	none	STRG.12423.1,blat.proc3825170.chain_1098	2	STRG.12423.2,blat.proc3825170.chain_1099	2
scaffold_24	retained_intron	6833657	6834175	+	asmbl_32349	none	Trinity_GG_32116_c2_g1_i1,blat.proc3825176.chain_3730,blat.proc3825176.chain_3736	3	STRG.26736.1,STRG.26736.4,blat.proc3825176.chain_3729	3
scaffold_4	starts_in_intron	6134849	6134849	-	asmbl_42655	none	blat.proc3825150.chain_734	1	STRG.4484.1	1
scaffold_10	spliced_intron	5200830	5200903	-	asmbl_4346	none	STRG.12347.2,blat.proc3825154.chain_914	2	STRG.12347.1,blat.proc3825154.chain_912,blat.proc3825154.chain_913	3
scaffold_8	spliced_intron	16392727	16393145	-	asmbl_52385,asmbl_52386,asmbl_52387,asmbl_52388,asmbl_52389,asmbl_52392	none	STRG.10626.1,STRG.10626.2,STRG.10626.3,STRG.10626.4,Trinity_GG_5893_c0_g1_i6,blat.proc3825152.chain_2845,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2849,blat.proc3825152.chain_2850,blat.proc3825152.chain_2851	11	blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	2
scaffold_14	alt_acceptor	7495624	7495625	+	asmbl_12167	none	STRG.17193.4	1	STRG.17193.2,Trinity_GG_26725_c1_g1_i2,blat.proc3825172.chain_1882	3
scaffold_2	spliced_intron	11448324	11448569	-	asmbl_23449	none	STRG.2258.2,blat.proc3825148.chain_2287	2	STRG.2258.1,Trinity_GG_1266_c0_g1_i1,blat.proc3825148.chain_2286	3
scaffold_22	ends_in_intron	4354729	4354729	+	asmbl_29987	none	blat.proc3825176.chain_1966	1	STRG.24857.1,STRG.24857.2,blat.proc3825176.chain_1962,blat.proc3825176.chain_1963,blat.proc3825176.chain_1964	5
scaffold_9	spliced_intron	3672539	3672630	-	asmbl_54920,asmbl_54921,asmbl_54925,asmbl_54926	none	STRG.10993.1,STRG.10993.2,STRG.10993.4,STRG.10993.5,blat.proc3825152.chain_3211,blat.proc3825152.chain_3215	6	blat.proc3825152.chain_3210	1
scaffold_4	spliced_intron	4051130	4051203	+	asmbl_41210	none	STRG.4313.1,Trinity_GG_19705_c0_g1_i1,blat.proc3825166.chain_756	3	Trinity_GG_19705_c0_g1_i2,blat.proc3825166.chain_757	2
scaffold_3	alt_donor	7216183	7216184	-	asmbl_38955	none	STRG.3326.2,blat.proc3825148.chain_3186,blat.proc3825148.chain_3187	3	STRG.3326.1,blat.proc3825148.chain_3185	2
scaffold_20	spliced_intron	1754144	1754287	+	asmbl_26450	none	STRG.22921.2,Trinity_GG_29951_c0_g1_i3,blat.proc3825176.chain_125	3	STRG.22921.1,blat.proc3825176.chain_122	2
scaffold_16	ends_in_intron	4137562	4137562	-	asmbl_17054	none	Trinity_GG_10830_c2_g1_i1	1	STRG.19229.2,STRG.19229.4,blat.proc3825158.chain_421,blat.proc3825158.chain_423	4
scaffold_1	starts_in_intron	17918994	17918994	+	asmbl_2540	none	Trinity_GG_18053_c0_g1_i4,blat.proc3825164.chain_1401	2	STRG.1253.2	1
scaffold_21	starts_in_intron	6398567	6398567	+	asmbl_28637	none	blat.proc3825176.chain_1281	1	STRG.24166.1,blat.proc3825176.chain_1279,blat.proc3825176.chain_1280,blat.proc3825176.chain_1282	4
scaffold_1	spliced_intron	12335617	12335989	-	asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_711,asmbl_712,asmbl_713,asmbl_714,asmbl_715,asmbl_716	none	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_831,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	13	Trinity_GG_444_c0_g1_i30,blat.proc3825148.chain_826,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_834,blat.proc3825148.chain_836	6
scaffold_7	spliced_intron	13952403	13952512	+	asmbl_50387,asmbl_50388	none	STRG.9492.1,Trinity_GG_22583_c0_g1_i2,blat.proc3825168.chain_2010	3	Trinity_GG_22583_c0_g1_i5,blat.proc3825168.chain_2008	2
scaffold_11	starts_in_intron	11998792	11998792	-	asmbl_7055	none	blat.proc3825154.chain_2669	1	STRG.14126.1,STRG.14126.2,STRG.14126.4,Trinity_GG_7897_c0_g1_i1,Trinity_GG_7897_c0_g1_i2,Trinity_GG_7897_c0_g1_i4,blat.proc3825154.chain_2671,blat.proc3825154.chain_2672,blat.proc3825154.chain_2673	9
scaffold_4	ends_in_intron	8852114	8852114	+	asmbl_41588	none	blat.proc3825166.chain_1163	1	STRG.4706.1,blat.proc3825166.chain_1161,blat.proc3825166.chain_1162	3
scaffold_20	retained_intron	11924841	11925165	+	asmbl_27102	none	STRG.23694.1,blat.proc3825176.chain_832	2	STRG.23694.2,blat.proc3825176.chain_833	2
scaffold_15	retained_intron	15857347	15857502	+	asmbl_15824,asmbl_15826	none	Trinity_GG_27688_c0_g1_i10,blat.proc3825172.chain_3573,blat.proc3825172.chain_3578	3	STRG.18973.2,STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3572,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575	10
scaffold_27	alt_donor	2884509	2884510	-	asmbl_36865,asmbl_36866	none	STRG.28772.1,STRG.28772.3,blat.proc3825162.chain_2014,blat.proc3825162.chain_2015	4	STRG.28772.2	1
scaffold_25	retained_intron	9291594	9291672	+	asmbl_33804	none	Trinity_GG_32639_c0_g1_i3,blat.proc3825178.chain_870	2	STRG.27744.1,blat.proc3825178.chain_868	2
scaffold_13	skipped_exon	6885038	6885978	+	asmbl_10993	none	STRG.15980.3,blat.proc3825172.chain_732	2	STRG.15980.1,STRG.15980.2,blat.proc3825172.chain_730,blat.proc3825172.chain_731	4
scaffold_11	retained_exon	4860785	4860893	+	asmbl_5530	none	STRG.13583.2,Trinity_GG_24778_c1_g1_i1,blat.proc3825170.chain_2110	3	STRG.13583.1	1
scaffold_11	alt_donor	14462942	14462943	-	asmbl_7166	none	STRG.14244.3	1	STRG.14244.1,blat.proc3825154.chain_2780	2
scaffold_9	retained_exon	644077	644460	+	asmbl_53784	none	STRG.10793.4	1	STRG.10793.1,blat.proc3825168.chain_3345	2
scaffold_15	spliced_intron	15158080	15158445	+	asmbl_15719,asmbl_15720	none	blat.proc3825172.chain_3439,blat.proc3825172.chain_3440	2	Trinity_GG_27624_c0_g1_i6,Trinity_GG_27624_c0_g1_i8,blat.proc3825172.chain_3436,blat.proc3825172.chain_3438	4
scaffold_19	starts_in_intron	7687580	7687580	-	asmbl_22255	none	blat.proc3825158.chain_3057	1	STRG.22244.1,blat.proc3825158.chain_3056	2
scaffold_5	alternate_exon	12916885	12918003	-	asmbl_44492	none	STRG.6524.1,blat.proc3825150.chain_2711	2	STRG.6524.2,blat.proc3825150.chain_2709,blat.proc3825150.chain_2710	3
scaffold_16	skipped_exon	14188298	14190333	-	asmbl_17438	none	STRG.19820.2,blat.proc3825158.chain_849	2	STRG.19820.1,STRG.19820.3,blat.proc3825158.chain_848	3
scaffold_5	alt_donor	9072893	9072894	+	asmbl_45596	none	STRG.6245.2,blat.proc3825166.chain_2461	2	blat.proc3825166.chain_2463	1
scaffold_13	alt_acceptor	8211275	8211276	-	asmbl_9953	none	STRG.16112.1	1	STRG.16112.2	1
scaffold_16	retained_intron	15229002	15229042	+	asmbl_16721,asmbl_16722	none	STRG.19882.1,STRG.19882.3	2	STRG.19882.4	1
scaffold_2	retained_intron	7876589	7876880	+	asmbl_24584	none	Trinity_GG_18501_c0_g1_i7,blat.proc3825164.chain_2288	2	STRG.2082.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i14,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i18,Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2287,blat.proc3825164.chain_2289,blat.proc3825164.chain_2290,blat.proc3825164.chain_2292,blat.proc3825164.chain_2294	11
scaffold_1	alt_donor	6279700	6279701	-	asmbl_344,asmbl_345,asmbl_346	none	STRG.423.1,STRG.423.2,STRG.423.3	3	STRG.423.4,Trinity_GG_229_c1_g1_i1,blat.proc3825148.chain_419	3
scaffold_9	retained_exon	3675428	3675783	-	asmbl_54920	none	STRG.10993.4	1	STRG.10993.1,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	5
scaffold_24	spliced_intron	9116511	9116746	+	asmbl_32510	none	blat.proc3825178.chain_173	1	blat.proc3825178.chain_179,blat.proc3825178.chain_180	2
scaffold_25	starts_in_intron	4451636	4451636	+	asmbl_33502	none	blat.proc3825178.chain_478	1	STRG.27375.1,Trinity_GG_32406_c0_g2_i1,blat.proc3825178.chain_479	3
scaffold_15	alt_donor	4520327	4520328	-	asmbl_14147	none	STRG.18183.1	1	STRG.18183.2	1
scaffold_10	alternate_exon	11969824	11970244	+	asmbl_3516	none	Trinity_GG_24389_c0_g1_i5,blat.proc3825170.chain_1447	2	STRG.12838.4,Trinity_GG_24389_c0_g1_i10,blat.proc3825170.chain_1449	3
scaffold_13	alternate_exon	11585610	11585749	+	asmbl_11292	none	STRG.16316.1	1	STRG.16316.6,blat.proc3825172.chain_1031	2
scaffold_6	alternate_exon	8581211	8581464	+	asmbl_47156	none	STRG.7738.4	1	STRG.7738.3,blat.proc3825168.chain_179,blat.proc3825168.chain_181	3
scaffold_3	spliced_intron	13833535	13833619	+	asmbl_40463	none	Trinity_GG_19394_c0_g1_i4,blat.proc3825166.chain_206	2	STRG.3730.1,Trinity_GG_19394_c0_g1_i1,Trinity_GG_19394_c0_g1_i3,blat.proc3825166.chain_207,blat.proc3825166.chain_208,blat.proc3825166.chain_210	6
scaffold_5	retained_intron	3935675	3935871	+	asmbl_45259	none	STRG.5863.1,Trinity_GG_20532_c0_g1_i3,blat.proc3825166.chain_2097	3	blat.proc3825166.chain_2095	1
scaffold_1	retained_exon	20134840	20134859	-	asmbl_1170	none	STRG.1386.5	1	blat.proc3825148.chain_1398	1
scaffold_21	alt_acceptor	4781531	4781532	+	asmbl_28536	none	STRG.24023.2	1	STRG.24023.1,Trinity_GG_30633_c0_g1_i1,blat.proc3825176.chain_1248	3
scaffold_15	spliced_intron	4983626	4984030	-	asmbl_14183	none	STRG.18211.4	1	STRG.18211.5,blat.proc3825156.chain_3069,blat.proc3825156.chain_3070	3
scaffold_8	alt_acceptor	8877806	8877807	+	asmbl_53039	none	STRG.10139.1,blat.proc3825168.chain_2705	2	STRG.10139.2,blat.proc3825168.chain_2706	2
scaffold_27	starts_in_intron	3091652	3091652	-	asmbl_36886	none	STRG.28796.1	1	STRG.28796.2,STRG.28796.3,STRG.28796.4,STRG.28796.5,STRG.28796.6,blat.proc3825162.chain_2064,blat.proc3825162.chain_2065,blat.proc3825162.chain_2068	8
scaffold_16	alt_acceptor	8312923	8312924	+	asmbl_16389	none	STRG.19463.1,Trinity_GG_27964_c0_g1_i1,blat.proc3825174.chain_364	3	STRG.19463.2	1
scaffold_27	spliced_intron	6258393	6258777	+	asmbl_36396,asmbl_36398	none	STRG.29016.3,blat.proc3825178.chain_2191	2	STRG.29016.1,blat.proc3825178.chain_2190	2
scaffold_10	skipped_exon	5258965	5259330	-	asmbl_4352	none	STRG.12356.1,blat.proc3825154.chain_920	2	STRG.12356.2,STRG.12356.3,blat.proc3825154.chain_919	3
scaffold_8	starts_in_intron	6121873	6121873	+	asmbl_52940	none	Trinity_GG_22863_c0_g1_i4,blat.proc3825168.chain_2539	2	STRG.10015.1,STRG.10015.2,STRG.10015.3,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	5
scaffold_11	spliced_intron	17084606	17085018	-	asmbl_7247,asmbl_7248,asmbl_7249,asmbl_7250,asmbl_7251,asmbl_7252,asmbl_7253	none	STRG.14373.1,STRG.14373.2,STRG.14373.3,STRG.14373.4,blat.proc3825154.chain_2882,blat.proc3825154.chain_2883,blat.proc3825154.chain_2885,blat.proc3825154.chain_2886	8	Trinity_GG_8018_c0_g1_i2,blat.proc3825154.chain_2884	2
scaffold_6	spliced_intron	72768	72798	-	asmbl_48018,asmbl_48019	none	STRG.7072.2,STRG.7072.3,Trinity_GG_3947_c0_g1_i4	3	STRG.7072.1,STRG.7072.4	2
scaffold_1	alt_acceptor	16717449	16717450	-	asmbl_1009,asmbl_1010,asmbl_1014	none	STRG.1177.1,STRG.1177.3,Trinity_GG_569_c0_g1_i3,blat.proc3825148.chain_1082,blat.proc3825148.chain_1083,blat.proc3825148.chain_1084	6	STRG.1177.2,STRG.1177.4	2
scaffold_22	alternate_exon	761024	761248	+	asmbl_29890	none	STRG.24731.1,Trinity_GG_30987_c0_g1_i1,blat.proc3825176.chain_1865	3	STRG.24731.2	1
scaffold_4	retained_exon	8771496	8771567	+	asmbl_41582	none	STRG.4691.5	1	STRG.4691.1,STRG.4691.2,STRG.4691.3,STRG.4691.4,Trinity_GG_19922_c0_g1_i2,blat.proc3825166.chain_1141,blat.proc3825166.chain_1142	7
scaffold_2	ends_in_intron	8301604	8301604	+	asmbl_24626,asmbl_24629	none	STRG.2114.1,blat.proc3825164.chain_2306,blat.proc3825164.chain_2307	3	STRG.2114.2,STRG.2114.3,blat.proc3825164.chain_2311	3
scaffold_8	alt_donor	9374360	9374361	-	asmbl_52026,asmbl_52027,asmbl_52030,asmbl_52032	none	STRG.10202.5,STRG.10202.6,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463	4	STRG.10202.3,STRG.10202.4,blat.proc3825152.chain_2464	3
scaffold_9	ends_in_intron	10278340	10278340	+	asmbl_54283	none	blat.proc3825170.chain_113	1	STRG.11374.1,blat.proc3825170.chain_112	2
scaffold_4	skipped_exon	14318583	14318899	-	asmbl_43044	none	STRG.5048.3,blat.proc3825150.chain_1203	2	STRG.5048.1,blat.proc3825150.chain_1206	2
scaffold_22	retained_intron	6166014	6166161	-	asmbl_29318	none	Trinity_GG_13927_c0_g1_i1,blat.proc3825160.chain_2118	2	STRG.24971.1,blat.proc3825160.chain_2117	2
scaffold_1	retained_intron	16095601	16095749	-	asmbl_972	none	STRG.1129.1,Trinity_GG_582_c0_g1_i1,blat.proc3825148.chain_1117,blat.proc3825148.chain_1119	4	STRG.1129.2,blat.proc3825148.chain_1118,blat.proc3825148.chain_1120	3
scaffold_25	retained_intron	7878592	7878745	+	asmbl_33685	none	STRG.27613.1	1	STRG.27613.2	1
scaffold_18	spliced_intron	13634278	13634349	-	asmbl_20177	none	STRG.21796.1,blat.proc3825158.chain_2648	2	blat.proc3825158.chain_2649,blat.proc3825158.chain_2650	2
scaffold_1555	retained_exon	1311	1456	-	asmbl_15975	none	STRG.30628.1	1	STRG.30628.2	1
scaffold_15	alt_donor	4231185	4231186	+	asmbl_15129,asmbl_15132	none	STRG.18172.2,blat.proc3825172.chain_2838,blat.proc3825172.chain_2843	3	Trinity_GG_27280_c0_g1_i5,blat.proc3825172.chain_2839	2
scaffold_24	alt_acceptor	1423113	1423114	-	asmbl_32730	none	STRG.26396.1,Trinity_GG_14697_c0_g1_i3,blat.proc3825160.chain_3422	3	STRG.26396.2,Trinity_GG_14697_c0_g1_i2,blat.proc3825160.chain_3423	3
scaffold_11	spliced_intron	8073261	8073486	-	asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6828,asmbl_6834	none	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335,blat.proc3825154.chain_2336	4	Trinity_GG_7709_c1_g1_i4,blat.proc3825154.chain_2337	2
scaffold_13	alternate_exon	7504556	7504749	-	asmbl_9887	none	STRG.16047.4,blat.proc3825156.chain_902	2	blat.proc3825156.chain_904,blat.proc3825156.chain_909	2
scaffold_20	alternate_exon	502155	509425	+	asmbl_26363	none	STRG.22757.1,Trinity_GG_29878_c0_g1_i1,blat.proc3825174.chain_3746	3	STRG.22757.2	1
scaffold_13	spliced_intron	3734866	3734962	+	asmbl_10730,asmbl_10731,asmbl_10732,asmbl_10733,asmbl_10734,asmbl_10736	none	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_445,blat.proc3825172.chain_446	11	blat.proc3825172.chain_448	1
scaffold_14	retained_intron	3240126	3240355	+	asmbl_11933	none	blat.proc3825172.chain_1617	1	STRG.16923.1,STRG.16923.2,blat.proc3825172.chain_1618,blat.proc3825172.chain_1621,blat.proc3825172.chain_1622	5
scaffold_20	alt_acceptor	9656271	9656272	+	asmbl_26880	none	STRG.23507.2	1	STRG.23507.1,Trinity_GG_30297_c0_g1_i1,blat.proc3825176.chain_662	3
scaffold_19	spliced_intron	13215875	13216174	-	asmbl_22615	none	Trinity_GG_12588_c1_g1_i13,blat.proc3825158.chain_3429	2	STRG.22653.2,Trinity_GG_12588_c1_g1_i4,blat.proc3825158.chain_3435	3
scaffold_5	alt_acceptor	19054725	19054726	+	asmbl_46305	none	STRG.7018.1,Trinity_GG_21165_c0_g1_i1,blat.proc3825166.chain_3222	3	Trinity_GG_21165_c0_g1_i2,blat.proc3825166.chain_3221	2
scaffold_5	spliced_intron	7035672	7035721	+	asmbl_45478	none	blat.proc3825166.chain_2375	1	STRG.6116.1,STRG.6116.2,STRG.6116.3,STRG.6116.4,Trinity_GG_20674_c1_g1_i4,blat.proc3825166.chain_2377	6
scaffold_22	alt_acceptor	4357960	4357961	+	asmbl_29983,asmbl_29986	none	STRG.24857.1,blat.proc3825176.chain_1963,blat.proc3825176.chain_1964	3	STRG.24857.2,blat.proc3825176.chain_1962	2
scaffold_1	retained_exon	22371428	22371747	+	asmbl_2689	none	STRG.1491.1	1	STRG.1491.3,STRG.1491.4	2
scaffold_6	alternate_exon	6012077	6012182	-	asmbl_48448	none	STRG.7550.1	1	STRG.7550.2	1
scaffold_10	alternate_exon	770899	784738	+	asmbl_2873,asmbl_2874,asmbl_2875,asmbl_2876	none	blat.proc3825170.chain_655,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	4	STRG.11971.8	1
scaffold_1	alt_acceptor	3618333	3618334	+	asmbl_1615,asmbl_1617	none	STRG.229.2,blat.proc3825164.chain_354	2	STRG.229.1,blat.proc3825164.chain_355,blat.proc3825164.chain_357	3
scaffold_23	starts_in_intron	7215652	7215652	+	asmbl_31681	none	Trinity_GG_31682_c0_g1_i2,blat.proc3825176.chain_2978	2	STRG.26045.1,blat.proc3825176.chain_2977	2
scaffold_10	starts_in_intron	13285586	13285586	-	asmbl_4872	none	Trinity_GG_7237_c0_g2_i1	1	blat.proc3825154.chain_1545	1
scaffold_28	alt_donor	3732175	3732176	-	asmbl_38168	none	blat.proc3825162.chain_2733	1	STRG.29587.1,STRG.29587.2,STRG.29587.3,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2737,blat.proc3825162.chain_2738	9
scaffold_27	alternate_exon	2818201	2818700	+	asmbl_36118,asmbl_36119,asmbl_36124	none	STRG.28763.1,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1924	5	STRG.28763.2,STRG.28763.3,STRG.28763.5,blat.proc3825178.chain_1925	4
scaffold_27	alt_acceptor	6266988	6266989	-	asmbl_37050	none	STRG.29018.2	1	STRG.29018.1,blat.proc3825162.chain_2245	2
scaffold_11	ends_in_intron	8428465	8428465	+	asmbl_5777	none	Trinity_GG_24892_c0_g1_i2,blat.proc3825170.chain_2301	2	STRG.13861.1,STRG.13861.2,Trinity_GG_24892_c0_g1_i3,Trinity_GG_24892_c0_g2_i1,Trinity_GG_24892_c0_g3_i1,blat.proc3825170.chain_2299,blat.proc3825170.chain_2305,blat.proc3825170.chain_2306	8
scaffold_24	retained_intron	8737754	8737865	-	asmbl_33099	none	blat.proc3825162.chain_181	1	STRG.26890.1,blat.proc3825162.chain_182,blat.proc3825162.chain_183,blat.proc3825162.chain_184	4
scaffold_8	skipped_exon	1338884	1340796	+	asmbl_52689	none	blat.proc3825168.chain_2213	1	STRG.9765.1	1
scaffold_9	spliced_intron	11028497	11028576	-	asmbl_55268	none	STRG.11415.1	1	STRG.11415.2	1
scaffold_9	retained_intron	6901990	6902110	-	asmbl_55089,asmbl_55091,asmbl_55092	none	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3394	4	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3389,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	5
scaffold_3	starts_in_intron	10275108	10275108	+	asmbl_40255	none	Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3730	2	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3
scaffold_23	alt_donor	4899477	4899478	+	asmbl_31537	none	STRG.25884.4	1	STRG.25884.1,STRG.25884.2,Trinity_GG_31591_c0_g1_i2,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817,blat.proc3825176.chain_2819	8
scaffold_9	skipped_exon	9531268	9532064	-	asmbl_55190,asmbl_55191,asmbl_55192	none	STRG.11314.2,blat.proc3825152.chain_3549,blat.proc3825152.chain_3550	3	STRG.11314.1,blat.proc3825152.chain_3548	2
scaffold_17	starts_in_intron	14060273	14060273	+	asmbl_19383	none	Trinity_GG_28783_c0_g1_i1,blat.proc3825174.chain_1783	2	STRG.20875.1,blat.proc3825174.chain_1782	2
scaffold_14	starts_in_intron	2942735	2942735	-	asmbl_12993,asmbl_12995	none	STRG.16899.2,blat.proc3825156.chain_1740	2	STRG.16899.1,blat.proc3825156.chain_1741	2
scaffold_13	spliced_intron	518381	518487	+	asmbl_10488,asmbl_10490	none	STRG.15449.4,blat.proc3825172.chain_183	2	STRG.15449.1,blat.proc3825172.chain_186,blat.proc3825172.chain_188	3
scaffold_2	spliced_intron	10725827	10726142	+	asmbl_24728	none	STRG.2242.1,blat.proc3825164.chain_2369	2	STRG.2242.2,blat.proc3825164.chain_2368	2
scaffold_8	retained_intron	18163021	18163268	-	asmbl_52516,asmbl_52517	none	blat.proc3825152.chain_2997,blat.proc3825152.chain_3000	2	STRG.10730.1,Trinity_GG_5967_c0_g1_i3,Trinity_GG_5967_c0_g1_i4,Trinity_GG_5967_c0_g1_i5,blat.proc3825152.chain_2998,blat.proc3825152.chain_2999,blat.proc3825152.chain_3001	7
scaffold_13	alt_donor	9952984	9952985	+	asmbl_11215	none	STRG.16236.1,blat.proc3825172.chain_1005	2	STRG.16236.2	1
scaffold_2	spliced_intron	8148213	8148438	-	asmbl_23318	none	STRG.2099.2	1	Trinity_GG_1167_c0_g1_i2,blat.proc3825148.chain_2124	2
scaffold_18	skipped_exon	5905545	5905824	-	asmbl_19875	none	STRG.21337.1	1	STRG.21337.2,STRG.21337.4	2
scaffold_24	spliced_intron	879746	879842	+	asmbl_32055	none	STRG.26371.2	1	STRG.26371.1,blat.proc3825176.chain_3378	2
scaffold_21	ends_in_intron	7823369	7823369	-	asmbl_27862	none	blat.proc3825160.chain_1418	1	STRG.24322.1,blat.proc3825160.chain_1419,blat.proc3825160.chain_1420	3
scaffold_15	spliced_intron	15409993	15410226	+	asmbl_15769	none	STRG.18930.1,blat.proc3825172.chain_3588	2	STRG.18930.4,blat.proc3825172.chain_3591	2
scaffold_28	retained_exon	8413200	8413268	+	asmbl_37745	none	STRG.29918.1,Trinity_GG_33871_c0_g1_i2,blat.proc3825178.chain_3062	3	STRG.29918.2,Trinity_GG_33871_c0_g1_i1,blat.proc3825178.chain_3063	3
scaffold_6	spliced_intron	7936991	7937104	-	asmbl_48516	none	STRG.7676.3	1	blat.proc3825152.chain_70	1
scaffold_2	ends_in_intron	4043881	4043881	-	asmbl_23044	none	Trinity_GG_1026_c0_g1_i2,blat.proc3825148.chain_1826	2	STRG.1848.1,blat.proc3825148.chain_1827	2
scaffold_10	alt_donor	8321056	8321057	-	asmbl_4574	none	STRG.12589.2	1	STRG.12589.1	1
scaffold_5	retained_intron	5754426	5756080	+	asmbl_45371,asmbl_45373	none	STRG.5996.1,Trinity_GG_20558_c0_g1_i4	2	STRG.5996.2,blat.proc3825166.chain_2158	2
scaffold_23	retained_intron	10020609	10020721	+	asmbl_31827	none	blat.proc3825176.chain_3106	1	STRG.26206.1,blat.proc3825176.chain_3103,blat.proc3825176.chain_3104	3
scaffold_26	spliced_intron	5524354	5524425	+	asmbl_35014	none	STRG.28262.4	1	STRG.28262.1	1
scaffold_17	ends_in_intron	12381278	12381278	-	asmbl_18323,asmbl_18325	none	STRG.20776.5,Trinity_GG_11637_c1_g1_i6,blat.proc3825158.chain_1709	3	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4,blat.proc3825158.chain_1711	5
scaffold_20	alt_donor	10132434	10132435	+	asmbl_26936	none	blat.proc3825176.chain_727	1	STRG.23557.2	1
scaffold_9	retained_exon	12112866	12112956	+	asmbl_54411,asmbl_54413	none	STRG.11537.3,blat.proc3825170.chain_369	2	STRG.11537.1,blat.proc3825170.chain_366	2
scaffold_11	alt_acceptor	13094446	13094447	+	asmbl_6034,asmbl_6035	none	STRG.14188.2,blat.proc3825170.chain_2746,blat.proc3825170.chain_2747	3	Trinity_GG_25144_c1_g1_i1,blat.proc3825170.chain_2748,blat.proc3825170.chain_2752	3
scaffold_21	skipped_exon	9706312	9707776	-	asmbl_27962	none	STRG.24431.2	1	STRG.24431.1	1
scaffold_12	alt_donor	10617872	10617873	-	asmbl_8766,asmbl_8768	none	STRG.15045.1,STRG.15045.3,blat.proc3825154.chain_3499	3	STRG.15045.2	1
scaffold_26	ends_in_intron	5487688	5487688	+	asmbl_35001	none	blat.proc3825178.chain_1365	1	STRG.28257.2,STRG.28257.4,Trinity_GG_32935_c1_g2_i1,blat.proc3825178.chain_1368,blat.proc3825178.chain_1369	5
scaffold_10	alt_donor	7120650	7120651	-	asmbl_4528	none	STRG.12530.1,blat.proc3825154.chain_1120	2	STRG.12530.2	1
scaffold_1	alt_acceptor	11546570	11546571	+	asmbl_2118	none	STRG.763.2	1	STRG.763.1,Trinity_GG_17785_c0_g1_i1,blat.proc3825164.chain_905	3
scaffold_15	spliced_intron	12434240	12434471	+	asmbl_15567,asmbl_15568,asmbl_15569,asmbl_15570,asmbl_15572,asmbl_15573	none	STRG.18701.1,Trinity_GG_27574_c0_g1_i7,blat.proc3825172.chain_3337,blat.proc3825172.chain_3338,blat.proc3825172.chain_3339,blat.proc3825172.chain_3340,blat.proc3825172.chain_3341,blat.proc3825172.chain_3342,blat.proc3825172.chain_3343	9	blat.proc3825172.chain_3344	1
scaffold_13	spliced_intron	222006	222122	+	asmbl_10461,asmbl_10464	none	STRG.15430.1,blat.proc3825172.chain_174,blat.proc3825172.chain_175	3	blat.proc3825172.chain_173	1
scaffold_26	spliced_intron	9314784	9314931	+	asmbl_35214,asmbl_35215,asmbl_35216,asmbl_35217,asmbl_35222,asmbl_35223,asmbl_35224	none	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1617,blat.proc3825178.chain_1618	8	blat.proc3825178.chain_1610	1
scaffold_26	alternate_exon	3941905	3942198	-	asmbl_35513	none	STRG.28082.3,blat.proc3825162.chain_1376	2	STRG.28082.1	1
scaffold_14	alt_acceptor	2840973	2840974	+	asmbl_11886	none	STRG.16881.2,Trinity_GG_26593_c0_g1_i2,blat.proc3825172.chain_1649	3	STRG.16881.1,Trinity_GG_26593_c0_g1_i1,blat.proc3825172.chain_1648	3
scaffold_22	alternate_exon	8190689	8190797	-	asmbl_29457	none	STRG.25169.2	1	STRG.25169.1,STRG.25169.3,blat.proc3825160.chain_2321	3
scaffold_26	alt_acceptor	6301423	6301424	-	asmbl_35667	none	STRG.28327.2,blat.proc3825162.chain_1558	2	STRG.28327.1,STRG.28327.3,blat.proc3825162.chain_1559,blat.proc3825162.chain_1560	4
scaffold_25	retained_intron	6311971	6313061	-	asmbl_34351	none	Trinity_GG_15440_c0_g1_i1,blat.proc3825162.chain_907	2	STRG.27516.1	1
scaffold_10	spliced_intron	11968331	11968370	+	asmbl_3519	none	STRG.12839.1	1	Trinity_GG_24389_c2_g1_i1,blat.proc3825170.chain_1455	2
scaffold_6	alternate_exon	2847463	2850009	-	asmbl_48173	none	STRG.7283.2	1	STRG.7283.3	1
scaffold_9	ends_in_intron	1686253	1686253	-	asmbl_54833	none	Trinity_GG_5986_c1_g1_i1,blat.proc3825152.chain_3045	2	STRG.10860.1,Trinity_GG_5986_c0_g1_i1,blat.proc3825152.chain_3043	3
scaffold_27	alternate_exon	4243441	4243485	+	asmbl_36266	none	STRG.28884.2,blat.proc3825178.chain_2060	2	STRG.28884.1,Trinity_GG_33291_c0_g1_i1,blat.proc3825178.chain_2059	3
scaffold_20	ends_in_intron	9499692	9499692	+	asmbl_26850,asmbl_26855	none	STRG.23489.1,blat.proc3825176.chain_632,blat.proc3825176.chain_634	3	STRG.23489.2,blat.proc3825176.chain_633,blat.proc3825176.chain_636	3
scaffold_17	retained_intron	9004119	9004561	+	asmbl_19057	none	blat.proc3825174.chain_1323	1	STRG.20525.3,blat.proc3825174.chain_1322	2
scaffold_13	retained_intron	4601282	4601369	-	asmbl_9640	none	Trinity_GG_8874_c0_g1_i17,blat.proc3825156.chain_664	2	STRG.15796.1,STRG.15796.2,blat.proc3825156.chain_662,blat.proc3825156.chain_666,blat.proc3825156.chain_670	5
scaffold_5	retained_intron	12573137	12573215	-	asmbl_44476	none	blat.proc3825150.chain_2691	1	STRG.6501.1,blat.proc3825150.chain_2690	2
scaffold_25	retained_intron	7803694	7803782	-	asmbl_34408	none	blat.proc3825162.chain_947	1	STRG.27602.1,blat.proc3825162.chain_948	2
scaffold_17	alt_donor	7467244	7467245	+	asmbl_18906	none	STRG.20396.1,blat.proc3825174.chain_1211	2	STRG.20396.2	1
scaffold_10	spliced_intron	12840971	12841059	-	asmbl_4830	none	STRG.12879.1,blat.proc3825154.chain_1484	2	blat.proc3825154.chain_1485	1
scaffold_19	spliced_intron	11483212	11483614	-	asmbl_22414	none	blat.proc3825158.chain_3244	1	STRG.22486.1,blat.proc3825158.chain_3250	2
scaffold_8	alt_donor	5856572	5856573	+	asmbl_52911	none	STRG.10001.1,Trinity_GG_22886_c0_g1_i1,blat.proc3825168.chain_2571	3	STRG.10001.2,STRG.10001.3,STRG.10001.4,Trinity_GG_22886_c0_g1_i2,Trinity_GG_22886_c0_g1_i3,Trinity_GG_22886_c0_g1_i4,Trinity_GG_22886_c0_g1_i5,blat.proc3825168.chain_2572,blat.proc3825168.chain_2573,blat.proc3825168.chain_2574,blat.proc3825168.chain_2575	11
scaffold_16	spliced_intron	6216174	6216261	-	asmbl_17152	none	STRG.19375.1,blat.proc3825158.chain_505	2	blat.proc3825158.chain_504	1
scaffold_6	skipped_exon	3041154	3042596	-	asmbl_48220	none	STRG.7310.1,blat.proc3825150.chain_3457	2	STRG.7310.2,STRG.7310.3,blat.proc3825150.chain_3455,blat.proc3825150.chain_3456	4
scaffold_4	retained_intron	10588124	10588890	-	asmbl_42857	none	Trinity_GG_2638_c0_g1_i1,blat.proc3825150.chain_932	2	STRG.4797.1,Trinity_GG_2638_c0_g1_i2,blat.proc3825150.chain_933	3
scaffold_16	alt_acceptor	10977219	10977220	-	asmbl_17324	none	STRG.19645.2	1	STRG.19645.1,blat.proc3825158.chain_660	2
scaffold_7	alt_acceptor	13866490	13866491	-	asmbl_51321	none	STRG.9480.5	1	STRG.9480.1,STRG.9480.4,blat.proc3825152.chain_1822	3
scaffold_24	alt_donor	1517705	1517706	+	asmbl_32080	none	STRG.26402.1,blat.proc3825160.chain_3507	2	STRG.26402.2	1
scaffold_21	alt_acceptor	1171944	1171945	-	asmbl_27383	none	STRG.23798.1,blat.proc3825160.chain_936	2	STRG.23798.2	1
scaffold_1	retained_intron	5741078	5741175	+	asmbl_1774	none	Trinity_GG_17568_c0_g1_i8,blat.proc3825164.chain_527	2	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528	5
scaffold_7	alt_donor	18394645	18394646	-	asmbl_51480	none	blat.proc3825152.chain_2020	1	STRG.9670.1,STRG.9670.2,STRG.9670.3,STRG.9670.4,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016,blat.proc3825152.chain_2018,blat.proc3825152.chain_2021	16
scaffold_15	retained_intron	12003651	12003789	-	asmbl_14554	none	STRG.18664.2,blat.proc3825156.chain_3535	2	STRG.18664.1,STRG.18664.3,blat.proc3825156.chain_3536	3
scaffold_27	alt_donor	4161179	4161180	-	asmbl_36947	none	STRG.28876.1,blat.proc3825162.chain_2122	2	STRG.28876.2	1
scaffold_6	starts_in_intron	1092795	1092795	+	asmbl_46686	none	blat.proc3825166.chain_3257	1	STRG.7172.1,blat.proc3825166.chain_3256	2
scaffold_2	retained_intron	18711549	18711905	+	asmbl_25232,asmbl_25235	none	STRG.2748.3,Trinity_GG_18860_c1_g1_i4,blat.proc3825164.chain_3006	3	STRG.2748.1,STRG.2748.2,blat.proc3825164.chain_3004,blat.proc3825164.chain_3005	4
scaffold_3	retained_exon	14331973	14332041	+	asmbl_40507,asmbl_40509	none	STRG.3779.1,blat.proc3825166.chain_247,blat.proc3825166.chain_249	3	blat.proc3825166.chain_248	1
scaffold_1	ends_in_intron	17918777	17918777	+	asmbl_2538	none	STRG.1253.1	1	STRG.1253.2	1
scaffold_15	alt_acceptor	15233141	15233142	-	asmbl_14761	none	STRG.18913.1,blat.proc3825158.chain_34	2	STRG.18913.3	1
scaffold_9	alternate_exon	12630716	12631094	+	asmbl_54454	none	STRG.11586.5	1	STRG.11586.1,STRG.11586.2,blat.proc3825170.chain_404,blat.proc3825170.chain_406	4
scaffold_5	alt_donor	4696384	4696385	+	asmbl_45290	none	STRG.5925.3	1	STRG.5925.2,blat.proc3825166.chain_2149,blat.proc3825166.chain_2150	3
scaffold_1	retained_intron	14360102	14360228	-	asmbl_903,asmbl_908	none	Trinity_GG_546_c0_g1_i5,blat.proc3825148.chain_1032,blat.proc3825148.chain_1033	3	STRG.1037.1,STRG.1037.2,STRG.1037.3,blat.proc3825148.chain_1031,blat.proc3825148.chain_1034,blat.proc3825148.chain_1035	6
scaffold_8	retained_intron	10240030	10240454	+	asmbl_53165	none	Trinity_GG_22967_c1_g1_i1,blat.proc3825168.chain_2735	2	STRG.10282.1,STRG.10282.2,STRG.10282.3,Trinity_GG_22967_c0_g1_i4,blat.proc3825168.chain_2729,blat.proc3825168.chain_2730,blat.proc3825168.chain_2731,blat.proc3825168.chain_2732,blat.proc3825168.chain_2733	9
scaffold_8	starts_in_intron	2663694	2663694	+	asmbl_52731	none	Trinity_GG_22761_c0_g1_i3,blat.proc3825168.chain_2338	2	STRG.9808.1,STRG.9808.2,Trinity_GG_22761_c0_g1_i1,Trinity_GG_22761_c0_g1_i2,blat.proc3825168.chain_2339,blat.proc3825168.chain_2340	6
scaffold_4	alt_acceptor	5106679	5106680	-	asmbl_42555	none	STRG.4407.1,blat.proc3825150.chain_626	2	STRG.4407.2	1
scaffold_6	spliced_intron	796568	796819	-	asmbl_48068,asmbl_48069	none	STRG.7142.1,blat.proc3825150.chain_3253	2	STRG.7142.2,STRG.7142.3,blat.proc3825150.chain_3254	3
scaffold_22	alt_donor	1002960	1002961	+	asmbl_29912,asmbl_29913,asmbl_29914	none	STRG.24754.1,STRG.24754.2,Trinity_GG_30985_c0_g1_i3,blat.proc3825176.chain_1857,blat.proc3825176.chain_1859,blat.proc3825176.chain_1861	6	STRG.24754.3,blat.proc3825176.chain_1858	2
scaffold_2	starts_in_intron	9156594	9156594	+	asmbl_24673	none	Trinity_GG_18534_c0_g1_i2,blat.proc3825164.chain_2351	2	STRG.2164.1,STRG.2164.2,Trinity_GG_18534_c0_g1_i1,blat.proc3825164.chain_2350	4
scaffold_19	retained_intron	8258058	8258133	+	asmbl_21507	none	blat.proc3825174.chain_3260	1	STRG.22285.1,blat.proc3825174.chain_3261	2
scaffold_7	retained_intron	9810110	9810191	-	asmbl_51072	none	STRG.9176.1	1	STRG.9176.2	1
scaffold_6	retained_intron	10546689	10547006	+	asmbl_47287	none	STRG.7891.1,blat.proc3825168.chain_341	2	Trinity_GG_21640_c0_g1_i2,blat.proc3825168.chain_342	2
scaffold_11	retained_intron	2061692	2061854	+	asmbl_5353	none	STRG.13366.3,blat.proc3825170.chain_1924	2	STRG.13366.1,STRG.13366.2,STRG.13366.4,blat.proc3825170.chain_1922,blat.proc3825170.chain_1926	5
scaffold_23	alt_donor	6630152	6630153	+	asmbl_31634,asmbl_31636,asmbl_31637	none	STRG.26012.2,blat.proc3825176.chain_2895,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897	4	STRG.26012.1,blat.proc3825176.chain_2894	2
scaffold_3	ends_in_intron	19406434	19406434	-	asmbl_39648,asmbl_39653	none	STRG.4086.4,STRG.4086.5,blat.proc3825150.chain_253	3	STRG.4086.1,STRG.4086.2,STRG.4086.3,blat.proc3825150.chain_250,blat.proc3825150.chain_251,blat.proc3825150.chain_252	6
scaffold_3	skipped_exon	2667897	2668742	+	asmbl_39912,asmbl_39913,asmbl_39914	none	STRG.3041.2,STRG.3041.3,STRG.3041.4,blat.proc3825164.chain_3260,blat.proc3825164.chain_3264	5	STRG.3041.1,blat.proc3825164.chain_3262,blat.proc3825164.chain_3263	3
scaffold_13	spliced_intron	1229434	1229825	+	asmbl_10551	none	STRG.15494.2	1	STRG.15494.1,STRG.15494.3,Trinity_GG_25867_c1_g1_i2,Trinity_GG_25867_c3_g1_i1,blat.proc3825172.chain_314,blat.proc3825172.chain_316	6
scaffold_16	starts_in_intron	6118349	6118349	+	asmbl_16269,asmbl_16270	none	blat.proc3825174.chain_240,blat.proc3825174.chain_242	2	STRG.19343.1,blat.proc3825174.chain_239,blat.proc3825174.chain_244	3
scaffold_11	starts_in_intron	12071767	12071767	-	asmbl_7075	none	blat.proc3825154.chain_2578	1	STRG.14130.2,Trinity_GG_7851_c1_g1_i2	2
scaffold_1	spliced_intron	20498696	20498844	-	asmbl_1184	none	blat.proc3825148.chain_1350	1	Trinity_GG_731_c1_g1_i1,blat.proc3825148.chain_1351	2
scaffold_2	retained_exon	17613833	17615047	+	asmbl_25186	none	STRG.2653.2,blat.proc3825164.chain_2943	2	STRG.2653.3	1
scaffold_11	alt_acceptor	7925336	7925337	+	asmbl_5698	none	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3	STRG.13804.3	1
scaffold_21	spliced_intron	6617614	6617692	+	asmbl_28673,asmbl_28674,asmbl_28675	none	STRG.24188.1,STRG.24188.2,Trinity_GG_30735_c0_g2_i2,blat.proc3825176.chain_1434,blat.proc3825176.chain_1436	5	Trinity_GG_30735_c0_g2_i3,blat.proc3825176.chain_1435,blat.proc3825176.chain_1437	3
scaffold_1	spliced_intron	14355333	14355698	-	asmbl_899,asmbl_900,asmbl_901,asmbl_902	none	blat.proc3825148.chain_1036,blat.proc3825148.chain_1037,blat.proc3825148.chain_1038,blat.proc3825148.chain_1040	4	Trinity_GG_547_c0_g1_i3,blat.proc3825148.chain_1039	2
scaffold_18	retained_intron	822928	823047	+	asmbl_20330	none	blat.proc3825174.chain_1874	1	STRG.21008.1,STRG.21008.2,blat.proc3825174.chain_1871,blat.proc3825174.chain_1872,blat.proc3825174.chain_1873	5
scaffold_17	ends_in_intron	9984538	9984538	+	asmbl_19141	none	Trinity_GG_28606_c4_g1_i1,blat.proc3825174.chain_1493	2	blat.proc3825174.chain_1488,blat.proc3825174.chain_1489	2
scaffold_13	skipped_exon	6046307	6048622	-	asmbl_9763,asmbl_9766	none	STRG.15915.1,STRG.15915.5,blat.proc3825156.chain_778,blat.proc3825156.chain_782	4	STRG.15915.4,blat.proc3825156.chain_784	2
scaffold_5	alt_acceptor	15766161	15766162	+	asmbl_46017,asmbl_46018,asmbl_46019	none	blat.proc3825166.chain_2916,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922	3	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2923	5
scaffold_11	starts_in_intron	12901405	12901405	-	asmbl_7104	none	blat.proc3825154.chain_2730	1	STRG.14175.1,STRG.14175.2,blat.proc3825154.chain_2731	3
scaffold_2	starts_in_intron	6674900	6674900	-	asmbl_23222	none	Trinity_GG_1126_c0_g1_i1,blat.proc3825148.chain_2030	2	STRG.2027.1,STRG.2027.2,STRG.2027.3,Trinity_GG_1126_c0_g1_i2,Trinity_GG_1126_c0_g1_i3,Trinity_GG_1126_c0_g1_i5,blat.proc3825148.chain_2027,blat.proc3825148.chain_2028,blat.proc3825148.chain_2029	9
scaffold_6	ends_in_intron	10750048	10750048	+	asmbl_47297	none	blat.proc3825168.chain_367	1	STRG.7893.1,blat.proc3825168.chain_365	2
scaffold_1	alt_acceptor	12410982	12410983	+	asmbl_2213	none	STRG.855.2	1	STRG.855.1,Trinity_GG_17839_c0_g1_i2,blat.proc3825164.chain_1023	3
scaffold_14	spliced_intron	9272559	9272679	-	asmbl_13360,asmbl_13362,asmbl_13363,asmbl_13364,asmbl_13366,asmbl_13367	none	STRG.17338.1,STRG.17338.2,STRG.17338.3,STRG.17338.4,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2203,blat.proc3825156.chain_2204	8	blat.proc3825156.chain_2200	1
scaffold_17	alt_donor	9994241	9994242	+	asmbl_19148,asmbl_19150	none	STRG.20614.1,STRG.20614.2,blat.proc3825174.chain_1475	3	blat.proc3825174.chain_1474	1
scaffold_11	retained_intron	9680424	9680534	-	asmbl_6946	none	STRG.13985.2,blat.proc3825154.chain_2480	2	STRG.13985.1,blat.proc3825154.chain_2481	2
scaffold_9	alt_donor	17470145	17470146	-	asmbl_55646	none	STRG.11840.3,blat.proc3825154.chain_346	2	STRG.11840.2	1
scaffold_2	alternate_exon	12352617	12355354	+	asmbl_24787	none	STRG.2295.1,Trinity_GG_18596_c0_g1_i1,Trinity_GG_18596_c1_g1_i1,blat.proc3825164.chain_2472,blat.proc3825164.chain_2473,blat.proc3825164.chain_2474	6	STRG.2295.2	1
scaffold_2	starts_in_intron	16861388	16861388	+	asmbl_25150	none	Trinity_GG_18794_c0_g1_i2,blat.proc3825164.chain_2899	2	STRG.2602.1,STRG.2602.2,STRG.2602.3,blat.proc3825164.chain_2898,blat.proc3825164.chain_2902,blat.proc3825164.chain_2903	6
scaffold_13	retained_intron	3733822	3733964	+	asmbl_10736,asmbl_10737	none	blat.proc3825172.chain_443,blat.proc3825172.chain_448	2	STRG.15695.2,blat.proc3825172.chain_447	2
scaffold_17	alt_acceptor	10050203	10050204	+	asmbl_19161,asmbl_19164,asmbl_19165	none	STRG.20618.1,STRG.20618.2,blat.proc3825174.chain_1497,blat.proc3825174.chain_1500	4	blat.proc3825174.chain_1496	1
scaffold_9	starts_in_intron	3674110	3674110	-	asmbl_54919,asmbl_54925	none	STRG.10993.2,blat.proc3825152.chain_3214	2	STRG.10993.1,STRG.10993.4,STRG.10993.5,Trinity_GG_6077_c0_g2_i2,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	8
scaffold_20	ends_in_intron	4095130	4095130	-	asmbl_25728	none	STRG.23106.3	1	STRG.23106.2	1
scaffold_14	starts_in_intron	341012	341012	+	asmbl_11745	none	blat.proc3825172.chain_1486	1	STRG.16725.1,blat.proc3825172.chain_1485	2
scaffold_11	retained_intron	17277488	17277700	-	asmbl_7259	none	Trinity_GG_8033_c1_g1_i2,blat.proc3825154.chain_2911	2	Trinity_GG_8033_c1_g1_i1	1
scaffold_15	retained_intron	2564142	2564591	+	asmbl_15068	none	STRG.18045.4	1	STRG.18045.1,Trinity_GG_27217_c0_g1_i6	2
scaffold_12	alt_acceptor	4983873	4983874	+	asmbl_7624,asmbl_7630,asmbl_7632,asmbl_7633	none	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3136,blat.proc3825170.chain_3139,blat.proc3825170.chain_3141	5	blat.proc3825170.chain_3135,blat.proc3825170.chain_3140	2
scaffold_8	alt_acceptor	17666942	17666943	-	asmbl_52479	none	STRG.10680.1,blat.proc3825152.chain_2946	2	STRG.10680.2	1
scaffold_13	starts_in_intron	363940	363940	-	asmbl_9316	none	Trinity_GG_8663_c0_g1_i22,blat.proc3825156.chain_300	2	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,STRG.15442.5,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i19,Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_290,blat.proc3825156.chain_294,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_298	15
scaffold_28	ends_in_intron	3927988	3927988	+	asmbl_37504	none	blat.proc3825178.chain_2786	1	STRG.29602.1,blat.proc3825178.chain_2785	2
scaffold_20	retained_intron	1469911	1470058	-	asmbl_25574,asmbl_25575,asmbl_25578	none	STRG.22868.1,Trinity_GG_12770_c1_g1_i7,blat.proc3825158.chain_3738,blat.proc3825158.chain_3740	4	STRG.22868.3,blat.proc3825158.chain_3736,blat.proc3825158.chain_3737	3
scaffold_3	skipped_exon	18154089	18156320	-	asmbl_39597	none	STRG.4025.1,blat.proc3825150.chain_206	2	STRG.4025.2,blat.proc3825150.chain_205	2
scaffold_9	retained_intron	7823073	7823170	-	asmbl_55112	none	blat.proc3825152.chain_3461	1	STRG.11225.1,blat.proc3825152.chain_3460	2
scaffold_16	retained_intron	14513223	14513295	-	asmbl_17448	none	blat.proc3825158.chain_874	1	STRG.19830.1,blat.proc3825158.chain_875	2
scaffold_1	retained_intron	20687704	20687850	-	asmbl_1189	none	STRG.1410.2	1	blat.proc3825148.chain_1342	1
scaffold_27	alt_acceptor	2787859	2787860	+	asmbl_36107	none	blat.proc3825178.chain_1829	1	STRG.28759.1,blat.proc3825178.chain_1826,blat.proc3825178.chain_1827,blat.proc3825178.chain_1830	4
scaffold_28	starts_in_intron	5230820	5230820	-	asmbl_38263	none	blat.proc3825162.chain_2848	1	STRG.29674.1,Trinity_GG_16632_c0_g1_i9,blat.proc3825162.chain_2843,blat.proc3825162.chain_2846,blat.proc3825162.chain_2849	5
scaffold_1	alternate_exon	20134621	20135277	-	asmbl_1175	none	blat.proc3825148.chain_1398	1	STRG.1386.6	1
scaffold_5	spliced_intron	10380174	10380270	-	asmbl_44351,asmbl_44352,asmbl_44353,asmbl_44354,asmbl_44355	none	STRG.6339.1,STRG.6339.2,blat.proc3825150.chain_2516,blat.proc3825150.chain_2517,blat.proc3825150.chain_2519	5	blat.proc3825150.chain_2518	1
scaffold_13	starts_in_intron	14882138	14882138	-	asmbl_10215	none	blat.proc3825156.chain_1358	1	STRG.16533.1,Trinity_GG_9248_c0_g1_i2,blat.proc3825156.chain_1357	3
scaffold_7	starts_in_intron	11953324	11953324	+	asmbl_50201	none	blat.proc3825168.chain_1741	1	STRG.9300.1,blat.proc3825168.chain_1740	2
scaffold_17	spliced_intron	5711677	5712050	-	asmbl_17948,asmbl_17949,asmbl_17950	none	STRG.20274.1,STRG.20274.3,blat.proc3825158.chain_1286,blat.proc3825158.chain_1287,blat.proc3825158.chain_1288	5	STRG.20274.2	1
scaffold_18	alternate_exon	6777317	6777433	-	asmbl_19916	none	STRG.21382.3,blat.proc3825158.chain_2320	2	STRG.21382.2	1
scaffold_19	alternate_exon	7582390	7583118	+	asmbl_21477,asmbl_21480	none	STRG.22236.3,Trinity_GG_29596_c0_g1_i2,blat.proc3825174.chain_3234	3	STRG.22236.1,STRG.22236.2,blat.proc3825174.chain_3233,blat.proc3825174.chain_3236	4
scaffold_25	ends_in_intron	9560251	9560251	-	asmbl_34509	none	Trinity_GG_15539_c0_g1_i9,blat.proc3825162.chain_1069	2	STRG.27775.1,blat.proc3825162.chain_1068,blat.proc3825162.chain_1070	3
scaffold_20	starts_in_intron	6657595	6657595	-	asmbl_25845	none	blat.proc3825160.chain_350	1	STRG.23241.1,STRG.23241.2,blat.proc3825160.chain_351,blat.proc3825160.chain_352,blat.proc3825160.chain_353	5
scaffold_23	spliced_intron	7045280	7045597	-	asmbl_31012	none	STRG.26031.1,blat.proc3825160.chain_3124	2	Trinity_GG_14529_c0_g1_i2,blat.proc3825160.chain_3125	2
scaffold_1	ends_in_intron	12789509	12789509	-	asmbl_766	none	blat.proc3825148.chain_883	1	STRG.901.1,STRG.901.3,blat.proc3825148.chain_882,blat.proc3825148.chain_884	4
scaffold_6	retained_intron	12937728	12937921	+	asmbl_47457	none	STRG.8053.2,blat.proc3825168.chain_532	2	STRG.8053.1,Trinity_GG_21733_c0_g1_i1,blat.proc3825168.chain_531	3
scaffold_13	skipped_exon	8805240	8806347	-	asmbl_9986	none	blat.proc3825156.chain_1072	1	blat.proc3825156.chain_1065,blat.proc3825156.chain_1067,blat.proc3825156.chain_1070	3
scaffold_13	alt_donor	1042355	1042356	+	asmbl_10527	none	STRG.15481.2	1	STRG.15481.1,blat.proc3825172.chain_126	2
scaffold_13	alternate_exon	406893	407071	-	asmbl_9335,asmbl_9344,asmbl_9345,asmbl_9346	none	STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_362,blat.proc3825156.chain_366	9	STRG.15444.2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360	7
scaffold_2	retained_intron	5183182	5183932	-	asmbl_23132	none	STRG.1929.1,blat.proc3825148.chain_1965	2	blat.proc3825148.chain_1970	1
scaffold_10	retained_intron	6070501	6070618	-	asmbl_4425,asmbl_4429,asmbl_4430	none	STRG.12445.4,blat.proc3825154.chain_1026,blat.proc3825154.chain_1032	3	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1033	7
scaffold_2	spliced_intron	19892061	19892133	-	asmbl_23878	none	STRG.2845.1	1	blat.proc3825148.chain_2765	1
scaffold_23	alt_acceptor	2151778	2151779	-	asmbl_30698	none	STRG.25684.1	1	STRG.25684.2,blat.proc3825160.chain_2852,blat.proc3825160.chain_2853	3
scaffold_24	alt_acceptor	10480713	10480714	+	asmbl_32563,asmbl_32564	none	STRG.27018.1,STRG.27018.3,blat.proc3825178.chain_204,blat.proc3825178.chain_205	4	STRG.27018.2	1
scaffold_6	spliced_intron	73979	74164	-	asmbl_48021	none	STRG.7072.4	1	STRG.7072.1,STRG.7072.2,STRG.7072.3,Trinity_GG_3947_c0_g1_i4	4
scaffold_3	spliced_intron	14319899	14319995	-	asmbl_39355	none	STRG.3772.1,Trinity_GG_2048_c1_g1_i2,blat.proc3825148.chain_3616	3	STRG.3772.2,Trinity_GG_2048_c1_g1_i4,blat.proc3825148.chain_3617	3
scaffold_13	spliced_intron	2652683	2652800	-	asmbl_9467,asmbl_9468,asmbl_9470,asmbl_9472	none	STRG.15580.1,Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_376,blat.proc3825156.chain_377,blat.proc3825156.chain_379,blat.proc3825156.chain_380	6	blat.proc3825156.chain_378	1
scaffold_7	ends_in_intron	728904	728904	-	asmbl_50701	none	Trinity_GG_4925_c0_g1_i5,blat.proc3825152.chain_1077	2	STRG.8609.1,STRG.8609.2,blat.proc3825152.chain_1079,blat.proc3825152.chain_1080	4
scaffold_1	starts_in_intron	7292042	7292042	-	asmbl_430	none	Trinity_GG_240_c0_g1_i2	1	STRG.521.1,blat.proc3825148.chain_438	2
scaffold_10	skipped_exon	5390028	5390782	+	asmbl_3167	none	STRG.12365.1,blat.proc3825170.chain_1033	2	STRG.12365.2,blat.proc3825170.chain_1032	2
scaffold_2	alt_acceptor	7881154	7881155	+	asmbl_24587	none	Trinity_GG_18501_c0_g1_i16,blat.proc3825164.chain_2292	2	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291	5
scaffold_13	retained_intron	989090	989193	-	asmbl_9395	none	Trinity_GG_8680_c0_g1_i1,blat.proc3825156.chain_337	2	STRG.15479.1,Trinity_GG_8680_c0_g1_i2,blat.proc3825156.chain_338	3
scaffold_25	spliced_intron	5158255	5158408	-	asmbl_34246	none	STRG.27443.2,blat.proc3825162.chain_809	2	blat.proc3825162.chain_805	1
scaffold_15	retained_intron	10633902	10633978	+	asmbl_15458,asmbl_15459	none	STRG.18550.1,STRG.18550.3,blat.proc3825172.chain_3203,blat.proc3825172.chain_3204	4	STRG.18550.2	1
scaffold_28	alt_acceptor	6926010	6926011	-	asmbl_38365	none	STRG.29766.2,blat.proc3825162.chain_2952	2	STRG.29766.3	1
scaffold_18	retained_exon	2833801	2834055	+	asmbl_20422	none	STRG.21142.1,blat.proc3825174.chain_2052	2	STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2056	3
scaffold_28	starts_in_intron	2166520	2166520	+	asmbl_37340	none	STRG.29385.3,blat.proc3825178.chain_2551	2	STRG.29385.1,STRG.29385.2,blat.proc3825178.chain_2552	3
scaffold_27	ends_in_intron	7260512	7260512	+	asmbl_36440	none	blat.proc3825178.chain_2289	1	blat.proc3825178.chain_2288	1
scaffold_7	retained_intron	3957526	3957770	-	asmbl_50841	none	Trinity_GG_5022_c1_g1_i1,blat.proc3825152.chain_1272	2	STRG.8789.1,blat.proc3825152.chain_1271	2
scaffold_44	alt_donor	30869	30870	-	asmbl_43713,asmbl_43714	none	STRG.30048.1,STRG.30048.2,blat.proc3825162.chain_3218	3	STRG.30048.3	1
scaffold_1	skipped_exon	20134876	20135349	-	asmbl_1173	none	STRG.1386.6	1	STRG.1386.5	1
scaffold_12	retained_exon	26756	26881	-	asmbl_8262,asmbl_8263	none	STRG.14411.1,STRG.14411.3,blat.proc3825154.chain_2931	3	STRG.14411.2,blat.proc3825154.chain_2930	2
scaffold_7	alt_donor	5183474	5183475	-	asmbl_50874,asmbl_50875	none	STRG.8855.1,STRG.8855.2,blat.proc3825152.chain_1305	3	STRG.8855.3	1
scaffold_10	retained_intron	13525424	13525835	-	asmbl_4898	none	blat.proc3825154.chain_1461	1	STRG.12951.1,blat.proc3825154.chain_1460,blat.proc3825154.chain_1462	3
scaffold_14	starts_in_intron	3170032	3170032	-	asmbl_12999	none	blat.proc3825156.chain_1762	1	STRG.16909.1,STRG.16909.2,blat.proc3825156.chain_1761,blat.proc3825156.chain_1763	4
scaffold_6	alt_donor	16054115	16054116	-	asmbl_49097	none	STRG.8346.2,blat.proc3825152.chain_755	2	STRG.8346.1	1
scaffold_5	alternate_exon	3089599	3089823	+	asmbl_45209	none	STRG.5808.1	1	STRG.5808.2,blat.proc3825166.chain_2048	2
scaffold_8	skipped_exon	18249797	18250058	-	asmbl_52524,asmbl_52525	none	STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3018	5	STRG.10728.3,blat.proc3825152.chain_3015,blat.proc3825152.chain_3016	3
scaffold_4	alternate_exon	18274914	18275098	-	asmbl_43357	none	STRG.5426.1	1	STRG.5426.2,STRG.5426.3	2
scaffold_24	retained_intron	3655845	3656569	+	asmbl_32147	none	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3	STRG.26550.3,Trinity_GG_31970_c0_g1_i5,blat.proc3825176.chain_3470	3
scaffold_26	alt_acceptor	6722043	6722044	+	asmbl_35108	none	STRG.28365.1,blat.proc3825178.chain_1439	2	STRG.28365.3	1
scaffold_10	starts_in_intron	3159106	3159106	+	asmbl_3032,asmbl_3033	none	STRG.12147.2,blat.proc3825170.chain_880	2	STRG.12147.1,blat.proc3825170.chain_878,blat.proc3825170.chain_879	3
scaffold_14	starts_in_intron	12132626	12132626	-	asmbl_13551	none	STRG.17545.1,blat.proc3825156.chain_2361	2	STRG.17545.2,blat.proc3825156.chain_2360	2
scaffold_527	ends_in_intron	3208	3208	+	asmbl_46538	none	blat.proc3825178.chain_3458	1	STRG.30366.1,Trinity_GG_34116_c0_g1_i2,blat.proc3825178.chain_3457	3
scaffold_3	alternate_exon	947697	947701	-	asmbl_38687	none	blat.proc3825148.chain_2841	1	STRG.2918.1	1
scaffold_18	starts_in_intron	816828	816828	+	asmbl_20322	none	Trinity_GG_28870_c0_g1_i6,blat.proc3825174.chain_1946	2	STRG.21006.1,STRG.21006.2,blat.proc3825174.chain_1945,blat.proc3825174.chain_1947,blat.proc3825174.chain_1948,blat.proc3825174.chain_1949,blat.proc3825174.chain_1950	7
scaffold_14	skipped_exon	14147812	14148982	+	asmbl_12528	none	STRG.17687.3	1	STRG.17687.1,STRG.17687.2,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	4
scaffold_6	alternate_exon	5183824	5184729	-	asmbl_48403	none	STRG.7488.1	1	STRG.7488.2	1
scaffold_5	alt_acceptor	12829477	12829478	-	asmbl_44489	none	STRG.6515.3	1	STRG.6515.1,STRG.6515.2,blat.proc3825150.chain_2692,blat.proc3825150.chain_2693	4
scaffold_8	retained_exon	11270088	11270564	-	asmbl_52142	none	STRG.10337.3	1	STRG.10337.2,blat.proc3825152.chain_2579	2
scaffold_4	starts_in_intron	15729480	15729480	-	asmbl_43122	none	blat.proc3825150.chain_1293	1	STRG.5162.1,blat.proc3825150.chain_1292,blat.proc3825150.chain_1294	3
scaffold_20	starts_in_intron	7824366	7824366	-	asmbl_25927	none	blat.proc3825160.chain_411	1	STRG.23333.1,blat.proc3825160.chain_410	2
scaffold_1	alt_acceptor	14626424	14626425	+	asmbl_2409,asmbl_2410	none	STRG.1064.1,blat.proc3825164.chain_1234,blat.proc3825164.chain_1235	3	STRG.1064.2	1
scaffold_13	retained_intron	2334729	2334862	+	asmbl_10610	none	STRG.15564.7	1	STRG.15564.2,STRG.15564.4,STRG.15564.6,blat.proc3825172.chain_222	4
scaffold_21	retained_exon	9840618	9840825	+	asmbl_28847	none	STRG.24439.1,blat.proc3825176.chain_1600	2	blat.proc3825176.chain_1601	1
scaffold_1	spliced_intron	5739912	5740071	+	asmbl_1776,asmbl_1777,asmbl_1778,asmbl_1779,asmbl_1780,asmbl_1781,asmbl_1782	none	blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528,blat.proc3825164.chain_529,blat.proc3825164.chain_530	7	STRG.390.2,Trinity_GG_17568_c1_g1_i1,blat.proc3825164.chain_532	3
scaffold_4	alt_acceptor	14290981	14290982	+	asmbl_41857	none	STRG.5043.2	1	STRG.5043.1,blat.proc3825166.chain_1462	2
scaffold_7	spliced_intron	4545952	4546317	+	asmbl_49744,asmbl_49745	none	STRG.8829.1,blat.proc3825168.chain_1298,blat.proc3825168.chain_1301	3	blat.proc3825168.chain_1299,blat.proc3825168.chain_1300	2
scaffold_28	starts_in_intron	2932564	2932564	-	asmbl_38113	none	STRG.29489.3	1	STRG.29489.1,STRG.29489.2	2
scaffold_10	alt_donor	976504	976505	-	asmbl_4022	none	Trinity_GG_6637_c0_g1_i9	1	Trinity_GG_6637_c0_g1_i6	1
scaffold_359	alt_acceptor	2542	2543	+	asmbl_41044	none	STRG.30302.1	1	blat.proc3825178.chain_3402	1
scaffold_23	retained_intron	1514785	1514962	-	asmbl_30657	none	blat.proc3825160.chain_2809	1	STRG.25633.1,blat.proc3825160.chain_2808	2
scaffold_14	alt_acceptor	8291982	8291983	-	asmbl_13280	none	STRG.17253.1	1	STRG.17253.2,blat.proc3825156.chain_2074	2
scaffold_13	alt_acceptor	16190413	16190414	-	asmbl_10278	none	STRG.16666.1,Trinity_GG_9290_c0_g1_i1,blat.proc3825156.chain_1426	3	STRG.16666.2	1
scaffold_6	alt_donor	11514131	11514132	+	asmbl_47341	none	STRG.7946.2,Trinity_GG_21649_c0_g1_i2,blat.proc3825168.chain_355	3	STRG.7946.1,Trinity_GG_21649_c0_g1_i1,blat.proc3825168.chain_356	3
scaffold_25	alt_donor	4454483	4454484	-	asmbl_34190	none	STRG.27376.2	1	STRG.27376.3	1
scaffold_18	ends_in_intron	6323533	6323533	+	asmbl_20672	none	blat.proc3825174.chain_2349	1	STRG.21364.1,Trinity_GG_29091_c0_g1_i2,blat.proc3825174.chain_2350	3
scaffold_13	spliced_intron	12253907	12254148	+	asmbl_11348,asmbl_11349,asmbl_11352,asmbl_11353,asmbl_11355	none	STRG.16359.1,STRG.16359.3,STRG.16359.4,Trinity_GG_26285_c0_g1_i1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1113,blat.proc3825172.chain_1114,blat.proc3825172.chain_1115	8	STRG.16359.2,Trinity_GG_26285_c0_g1_i3,blat.proc3825172.chain_1112	3
scaffold_1	spliced_intron	9515894	9516029	-	asmbl_539,asmbl_541	none	STRG.637.1,blat.proc3825148.chain_628,blat.proc3825148.chain_630	3	STRG.637.2,STRG.637.3,blat.proc3825148.chain_627	3
scaffold_6	starts_in_intron	12654293	12654293	+	asmbl_47432	none	Trinity_GG_21691_c1_g1_i1,blat.proc3825168.chain_446	2	STRG.8027.1,STRG.8027.2,blat.proc3825168.chain_448,blat.proc3825168.chain_449	4
scaffold_23	alt_acceptor	4091584	4091585	+	asmbl_31479,asmbl_31482	none	STRG.25819.1,Trinity_GG_31556_c0_g1_i1,blat.proc3825176.chain_2755	3	STRG.25819.2,blat.proc3825176.chain_2754	2
scaffold_26	retained_exon	1995175	1995221	+	asmbl_34727	none	blat.proc3825178.chain_995	1	STRG.27942.1	1
scaffold_10	alt_donor	10640623	10640624	-	asmbl_4754	none	STRG.12763.1	1	STRG.12763.2	1
scaffold_15	retained_intron	15188079	15188653	+	asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737	none	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	6	STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3536	5
scaffold_17	ends_in_intron	2634278	2634278	+	asmbl_18670,asmbl_18674	none	STRG.20060.1,STRG.20060.2,Trinity_GG_28292_c0_g1_i1,blat.proc3825174.chain_929	4	STRG.20060.3,STRG.20060.4,Trinity_GG_28292_c0_g1_i3,blat.proc3825174.chain_926,blat.proc3825174.chain_928	5
scaffold_17	skipped_exon	6203941	6205818	-	asmbl_17976	none	Trinity_GG_11408_c0_g1_i2,blat.proc3825158.chain_1334	2	STRG.20295.1,Trinity_GG_11408_c0_g1_i1,blat.proc3825158.chain_1335,blat.proc3825158.chain_1336	4
scaffold_19	alt_acceptor	10240084	10240085	-	asmbl_22347	none	STRG.22406.1,blat.proc3825158.chain_3121	2	STRG.22406.2	1
scaffold_5	retained_intron	7707898	7707967	+	asmbl_45502	none	blat.proc3825166.chain_2364	1	STRG.6149.1,STRG.6149.2,blat.proc3825166.chain_2365	3
scaffold_1	alt_acceptor	863590	863591	+	asmbl_1432	none	STRG.38.1,Trinity_GG_17351_c0_g1_i2,blat.proc3825164.chain_140	3	STRG.38.2,Trinity_GG_17351_c0_g1_i4,blat.proc3825164.chain_138	3
scaffold_1445	retained_intron	333	442	+	asmbl_13885	none	STRG.30605.1,Trinity_GG_34223_c0_g1_i1,blat.proc3825178.chain_3604	3	STRG.30605.2	1
scaffold_19	alt_acceptor	12578017	12578018	-	asmbl_22520,asmbl_22521	none	STRG.22584.2,STRG.22584.3	2	STRG.22584.1,blat.proc3825158.chain_3373,blat.proc3825158.chain_3374	3
scaffold_11	retained_intron	11639424	11639532	+	asmbl_5985	none	blat.proc3825170.chain_2638	1	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2634,blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2639,blat.proc3825170.chain_2640	8
scaffold_22	alt_donor	719928	719929	-	asmbl_29121	none	STRG.24723.2,Trinity_GG_13821_c0_g1_i2,blat.proc3825160.chain_1917	3	STRG.24723.1,Trinity_GG_13821_c0_g1_i1,blat.proc3825160.chain_1918	3
scaffold_21	retained_intron	1053775	1054170	-	asmbl_27377,asmbl_27378,asmbl_27381,asmbl_27382	none	STRG.23787.3,STRG.23787.4,Trinity_GG_13262_c0_g1_i1,Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_925,blat.proc3825160.chain_926	6	STRG.23787.2,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922	3
scaffold_17	starts_in_intron	10055263	10055263	+	asmbl_19167	none	blat.proc3825174.chain_1477	1	STRG.20622.1,blat.proc3825174.chain_1478	2
scaffold_3	starts_in_intron	12456223	12456223	-	asmbl_39212	none	blat.proc3825148.chain_3508	1	STRG.3643.1,STRG.3643.2,blat.proc3825148.chain_3506,blat.proc3825148.chain_3507	4
scaffold_9	starts_in_intron	2504042	2504042	+	asmbl_53843	none	STRG.10899.3	1	STRG.10899.1,STRG.10899.2,blat.proc3825168.chain_3401	3
scaffold_6	retained_exon	299073	299109	+	asmbl_46648	none	STRG.7091.2,Trinity_GG_21228_c0_g1_i3,blat.proc3825166.chain_3318	3	STRG.7091.4,Trinity_GG_21228_c0_g1_i1,blat.proc3825166.chain_3316	3
scaffold_8	ends_in_intron	12981360	12981360	-	asmbl_52264	none	blat.proc3825152.chain_2703	1	STRG.10484.1,blat.proc3825152.chain_2704	2
scaffold_26	retained_intron	5033716	5033863	+	asmbl_34943,asmbl_34945,asmbl_34946,asmbl_34950,asmbl_34954,asmbl_34956,asmbl_34957	none	STRG.28240.1,STRG.28240.2,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1175,blat.proc3825178.chain_1177,blat.proc3825178.chain_1180	9	STRG.28240.3,blat.proc3825178.chain_1179,blat.proc3825178.chain_1182	3
scaffold_2	retained_intron	888658	888815	+	asmbl_24132	none	STRG.1565.2,Trinity_GG_18210_c1_g1_i3,blat.proc3825164.chain_1713	3	STRG.1565.1,STRG.1565.3,STRG.1565.4,blat.proc3825164.chain_1714	4
scaffold_13	ends_in_intron	5528191	5528191	-	asmbl_9696	none	Trinity_GG_8908_c0_g1_i1,blat.proc3825156.chain_718	2	STRG.15851.1,blat.proc3825156.chain_719	2
scaffold_7	starts_in_intron	12369558	12369558	+	asmbl_50254	none	blat.proc3825168.chain_1879	1	blat.proc3825168.chain_1875	1
scaffold_24	starts_in_intron	1423288	1423288	-	asmbl_32731	none	Trinity_GG_14697_c0_g1_i1,blat.proc3825160.chain_3421	2	STRG.26396.1,STRG.26396.2,Trinity_GG_14697_c0_g1_i2,Trinity_GG_14697_c0_g1_i3,blat.proc3825160.chain_3422,blat.proc3825160.chain_3423	6
scaffold_13	alt_donor	1042422	1042423	+	asmbl_10525	none	STRG.15481.1,blat.proc3825172.chain_126	2	STRG.15481.2	1
scaffold_2	alternate_exon	888816	889459	+	asmbl_24128,asmbl_24133,asmbl_24135	none	STRG.1565.1,STRG.1565.3,STRG.1565.4	3	blat.proc3825164.chain_1712	1
scaffold_1	alt_donor	11174211	11174212	+	asmbl_2081	none	STRG.747.4	1	STRG.747.3,blat.proc3825164.chain_914	2
scaffold_4	alt_donor	10129511	10129512	-	asmbl_42836	none	STRG.4779.1,blat.proc3825150.chain_974	2	blat.proc3825150.chain_975	1
scaffold_25	alternate_exon	2089236	2089384	-	asmbl_34061	none	blat.proc3825162.chain_615	1	STRG.27219.1	1
scaffold_23	spliced_intron	8843715	8843755	+	asmbl_31788	none	STRG.26151.1	1	STRG.26151.2,blat.proc3825176.chain_3130	2
scaffold_14	spliced_intron	2919342	2919421	-	asmbl_12991	none	STRG.16895.1,blat.proc3825156.chain_1738	2	blat.proc3825156.chain_1737	1
scaffold_1	spliced_intron	11800832	11801098	-	asmbl_672	none	blat.proc3825148.chain_791	1	STRG.796.3	1
scaffold_60	retained_intron	15832	15983	-	asmbl_49458	none	blat.proc3825162.chain_3256	1	blat.proc3825162.chain_3255	1
scaffold_16	alt_acceptor	9033769	9033770	+	asmbl_16455	none	STRG.19515.1,blat.proc3825174.chain_442	2	STRG.19515.2,STRG.19515.3,blat.proc3825174.chain_440	3
scaffold_10	alternate_exon	11968016	11968161	+	asmbl_3507	none	STRG.12838.4,Trinity_GG_24389_c0_g1_i10,blat.proc3825170.chain_1449	3	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.5,STRG.12838.6,Trinity_GG_24389_c0_g1_i5,blat.proc3825170.chain_1447	7
scaffold_5	retained_exon	11992076	11993127	-	asmbl_44427,asmbl_44433	none	STRG.6453.4,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	3	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3
scaffold_15	spliced_intron	12133093	12133392	-	asmbl_14564	none	STRG.18689.1,blat.proc3825156.chain_3499,blat.proc3825156.chain_3500	3	blat.proc3825156.chain_3496	1
scaffold_8	alternate_exon	4692739	4692773	+	asmbl_52851	none	STRG.9929.1	1	STRG.9929.2,blat.proc3825168.chain_2505	2
scaffold_8	retained_exon	12326315	12326390	-	asmbl_52188,asmbl_52195	none	STRG.10413.1,blat.proc3825152.chain_2631,blat.proc3825152.chain_2636	3	STRG.10413.3,blat.proc3825152.chain_2633	2
scaffold_15	alt_donor	14634501	14634502	-	asmbl_14732,asmbl_14733,asmbl_14734	none	STRG.18877.1,STRG.18877.2,STRG.18877.3,blat.proc3825156.chain_3748,blat.proc3825156.chain_3749,blat.proc3825156.chain_3750	6	STRG.18877.4	1
scaffold_94	starts_in_intron	11499	11499	+	asmbl_55842	none	Trinity_GG_34004_c1_g1_i1,blat.proc3825178.chain_3263	2	STRG.30138.1,STRG.30138.2	2
scaffold_11	alt_acceptor	3137958	3137959	-	asmbl_6533	none	blat.proc3825154.chain_2025	1	STRG.13446.1,blat.proc3825154.chain_2026	2
scaffold_20	alt_donor	9825875	9825876	-	asmbl_26057	none	blat.proc3825160.chain_613	1	STRG.23529.1,STRG.23529.2,blat.proc3825160.chain_614,blat.proc3825160.chain_615,blat.proc3825160.chain_616	5
scaffold_7	retained_intron	13960665	13960867	+	asmbl_50391,asmbl_50393	none	STRG.9495.3,Trinity_GG_22592_c0_g1_i2,blat.proc3825168.chain_2024	3	STRG.9495.1,STRG.9495.2,Trinity_GG_22592_c0_g1_i1,blat.proc3825168.chain_2025	4
scaffold_19	alternate_exon	13131717	13136433	-	asmbl_22603	none	blat.proc3825158.chain_3463	1	STRG.22634.2,Trinity_GG_12601_c0_g1_i1,blat.proc3825158.chain_3462	3
scaffold_15	spliced_intron	12433731	12434069	+	asmbl_15570,asmbl_15573	none	STRG.18701.1,Trinity_GG_27574_c0_g1_i7,blat.proc3825172.chain_3342	3	blat.proc3825172.chain_3337,blat.proc3825172.chain_3338,blat.proc3825172.chain_3339,blat.proc3825172.chain_3340,blat.proc3825172.chain_3341,blat.proc3825172.chain_3343,blat.proc3825172.chain_3344	7
scaffold_4	skipped_exon	10949549	10950569	+	asmbl_41687	none	STRG.4821.1,blat.proc3825166.chain_1269	2	STRG.4821.2	1
scaffold_15	starts_in_intron	2734387	2734387	-	asmbl_14039	none	Trinity_GG_10123_c0_g1_i2,blat.proc3825156.chain_2828	2	STRG.18063.1,blat.proc3825156.chain_2829	2
scaffold_21	starts_in_intron	3142863	3142863	+	asmbl_28453	none	Trinity_GG_30582_c0_g1_i3,blat.proc3825176.chain_1165	2	STRG.23944.1,blat.proc3825176.chain_1166,blat.proc3825176.chain_1167	3
scaffold_16	retained_exon	6144401	6144542	+	asmbl_16283,asmbl_16284	none	STRG.19354.1,STRG.19354.3	2	STRG.19354.2,blat.proc3825174.chain_141,blat.proc3825174.chain_143,blat.proc3825174.chain_144,blat.proc3825174.chain_145	5
scaffold_5	spliced_intron	19371162	19371247	-	asmbl_44905,asmbl_44908	none	STRG.7039.1,STRG.7039.3,Trinity_GG_3919_c0_g1_i1,blat.proc3825150.chain_3148	4	STRG.7039.2,Trinity_GG_3919_c0_g1_i3,blat.proc3825150.chain_3149	3
scaffold_25	alt_donor	6095949	6095950	-	asmbl_34327	none	Trinity_GG_15426_c0_g1_i4,blat.proc3825162.chain_888	2	STRG.27501.1,Trinity_GG_15426_c0_g1_i1,Trinity_GG_15426_c0_g1_i2,blat.proc3825162.chain_886,blat.proc3825162.chain_887	5
scaffold_25	starts_in_intron	9560159	9560159	-	asmbl_34508	none	blat.proc3825162.chain_1067	1	STRG.27775.1,blat.proc3825162.chain_1068,blat.proc3825162.chain_1070	3
scaffold_23	spliced_intron	2039135	2039394	+	asmbl_31373	none	STRG.25686.1,blat.proc3825176.chain_2602	2	blat.proc3825176.chain_2601,blat.proc3825176.chain_2603	2
scaffold_13	starts_in_intron	401817	401817	-	asmbl_9337,asmbl_9338,asmbl_9339,asmbl_9341,asmbl_9350	none	Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i3,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_367,blat.proc3825156.chain_368,blat.proc3825156.chain_369,blat.proc3825156.chain_370,blat.proc3825156.chain_371	8	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24
scaffold_5	starts_in_intron	15416947	15416947	-	asmbl_44667	none	blat.proc3825150.chain_2877	1	STRG.6728.1,STRG.6728.2,STRG.6728.3,blat.proc3825150.chain_2878,blat.proc3825150.chain_2880	5
scaffold_7	alt_acceptor	8326694	8326695	-	asmbl_51008,asmbl_51010	none	STRG.9069.3,blat.proc3825152.chain_1384	2	STRG.9069.1,blat.proc3825152.chain_1386,blat.proc3825152.chain_1393	3
scaffold_13	alt_acceptor	2996933	2996934	+	asmbl_10647,asmbl_10648	none	STRG.15606.2,STRG.15606.3	2	STRG.15606.1,Trinity_GG_25895_c0_g1_i3,blat.proc3825172.chain_367,blat.proc3825172.chain_368	4
scaffold_4	alt_donor	7245467	7245468	+	asmbl_41474	none	STRG.4556.1,Trinity_GG_19847_c0_g1_i1,blat.proc3825166.chain_1019	3	STRG.4556.2,blat.proc3825166.chain_1018	2
scaffold_19	spliced_intron	13102708	13103005	-	asmbl_22595	none	STRG.22632.2,Trinity_GG_12604_c0_g1_i2,blat.proc3825158.chain_3467	3	STRG.22632.1,blat.proc3825158.chain_3468	2
scaffold_2	alt_acceptor	8059380	8059381	-	asmbl_23310	none	STRG.2093.3	1	STRG.2093.2,blat.proc3825148.chain_2111	2
scaffold_17	starts_in_intron	13530931	13530931	+	asmbl_19332	none	Trinity_GG_28761_c0_g1_i2,blat.proc3825174.chain_1736	2	STRG.20838.1,blat.proc3825174.chain_1737	2
scaffold_11	spliced_intron	8079637	8079771	+	asmbl_5716	none	Trinity_GG_24895_c0_g1_i1,blat.proc3825170.chain_2312	2	STRG.13816.1,Trinity_GG_24895_c0_g1_i2,Trinity_GG_24895_c0_g1_i3,Trinity_GG_24895_c0_g1_i5,blat.proc3825170.chain_2309,blat.proc3825170.chain_2310,blat.proc3825170.chain_2311	7
scaffold_24	alt_acceptor	1517751	1517752	+	asmbl_32080	none	STRG.26402.1,blat.proc3825160.chain_3507	2	STRG.26402.2	1
scaffold_27	retained_intron	314278	314458	-	asmbl_36657	none	STRG.28557.2,Trinity_GG_15948_c0_g1_i7	2	STRG.28557.1,STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1728	5
scaffold_27	starts_in_intron	3623584	3623584	+	asmbl_36215,asmbl_36216,asmbl_36217	none	Trinity_GG_33273_c0_g1_i2,blat.proc3825178.chain_2007,blat.proc3825178.chain_2008,blat.proc3825178.chain_2009	4	STRG.28832.1,Trinity_GG_33273_c0_g1_i4,Trinity_GG_33273_c0_g1_i5,blat.proc3825178.chain_2010,blat.proc3825178.chain_2011	5
scaffold_9	spliced_intron	17743454	17743546	+	asmbl_54639,asmbl_54640,asmbl_54641,asmbl_54642,asmbl_54643,asmbl_54645	none	STRG.11863.1,STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_563,blat.proc3825170.chain_564,blat.proc3825170.chain_565,blat.proc3825170.chain_566,blat.proc3825170.chain_567	8	Trinity_GG_23880_c0_g1_i6,blat.proc3825170.chain_569	2
scaffold_21	retained_intron	3015285	3015391	+	asmbl_28436	none	blat.proc3825176.chain_1104	1	STRG.23928.2,blat.proc3825176.chain_1102,blat.proc3825176.chain_1103,blat.proc3825176.chain_1105	4
scaffold_6	ends_in_intron	8581138	8581138	+	asmbl_47151	none	STRG.7738.1	1	STRG.7738.2,STRG.7738.3,blat.proc3825168.chain_179,blat.proc3825168.chain_181	4
scaffold_13	starts_in_intron	14174778	14174778	+	asmbl_11431	none	Trinity_GG_26388_c0_g1_i1,Trinity_GG_26388_c0_g1_i8,blat.proc3825172.chain_1267,blat.proc3825172.chain_1268	4	STRG.16460.2,STRG.16460.4,STRG.16460.5,Trinity_GG_26388_c0_g1_i2,Trinity_GG_26388_c0_g1_i6,Trinity_GG_26388_c0_g1_i7,blat.proc3825172.chain_1265,blat.proc3825172.chain_1269,blat.proc3825172.chain_1270	9
scaffold_22	retained_exon	6903172	6903212	-	asmbl_29345	none	STRG.25009.2	1	STRG.25009.1	1
scaffold_2	retained_intron	6640625	6640693	-	asmbl_23216	none	blat.proc3825148.chain_2033	1	STRG.2030.1,STRG.2030.2,STRG.2030.3,blat.proc3825148.chain_2032,blat.proc3825148.chain_2034,blat.proc3825148.chain_2037	6
scaffold_13	spliced_intron	5106775	5107098	-	asmbl_9673	none	STRG.15813.1,blat.proc3825156.chain_686	2	STRG.15813.2,blat.proc3825156.chain_685	2
scaffold_8	alt_donor	3762006	3762007	+	asmbl_52800	none	STRG.9866.2	1	STRG.9866.1	1
scaffold_27	retained_intron	2903073	2903179	-	asmbl_36870	none	STRG.28776.3,blat.proc3825162.chain_1965	2	STRG.28776.1,Trinity_GG_16082_c0_g1_i2,blat.proc3825162.chain_1966	3
scaffold_20	starts_in_intron	7185485	7185485	-	asmbl_25883	none	blat.proc3825160.chain_385	1	STRG.23287.1,blat.proc3825160.chain_383,blat.proc3825160.chain_384	3
scaffold_12	alternate_exon	16437900	16438733	+	asmbl_8185	none	STRG.15407.2	1	STRG.15407.1	1
scaffold_4	alt_donor	16317634	16317635	+	asmbl_41961,asmbl_41962,asmbl_41963,asmbl_41964	none	STRG.5200.1,STRG.5200.2,STRG.5200.3,blat.proc3825166.chain_1499,blat.proc3825166.chain_1501	5	STRG.5200.4	1
scaffold_9	retained_intron	12012109	12012204	+	asmbl_54405	none	Trinity_GG_23759_c0_g1_i1,blat.proc3825170.chain_357	2	STRG.11527.2	1
scaffold_21	spliced_intron	9780293	9781249	+	asmbl_28845	none	STRG.24433.2	1	STRG.24433.1,Trinity_GG_30833_c0_g1_i2,blat.proc3825176.chain_1604	3
scaffold_8	alt_acceptor	9374179	9374180	-	asmbl_52025,asmbl_52027,asmbl_52028,asmbl_52030,asmbl_52032	none	STRG.10202.3,STRG.10202.4,STRG.10202.6,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463,blat.proc3825152.chain_2464	6	STRG.10202.5	1
scaffold_1	starts_in_intron	10408020	10408020	-	asmbl_579	none	blat.proc3825148.chain_692	1	STRG.676.1,STRG.676.2,blat.proc3825148.chain_693,blat.proc3825148.chain_694,blat.proc3825148.chain_695	5
scaffold_23	spliced_intron	10981234	10981331	-	asmbl_31183	none	STRG.26308.1,blat.proc3825160.chain_3395	2	STRG.26308.3	1
scaffold_1	alt_acceptor	15122072	15122073	+	asmbl_2423,asmbl_2425	none	STRG.1087.1,STRG.1087.2,blat.proc3825164.chain_1247,blat.proc3825164.chain_1248	4	STRG.1087.3	1
scaffold_27	skipped_exon	6194706	6196554	+	asmbl_36378,asmbl_36380	none	STRG.29014.1,STRG.29014.4	2	STRG.29014.3	1
scaffold_1	spliced_intron	10950202	10950350	+	asmbl_2041	none	blat.proc3825164.chain_863	1	STRG.715.2,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_862	6
scaffold_4	retained_exon	7150796	7151103	+	asmbl_41467	none	STRG.4559.3	1	STRG.4559.1,STRG.4559.4	2
scaffold_15	starts_in_intron	10142704	10142704	+	asmbl_15444	none	blat.proc3825172.chain_3184	1	STRG.18521.1	1
scaffold_16	skipped_exon	7097030	7097963	+	asmbl_16324	none	STRG.19387.2,blat.proc3825174.chain_317	2	STRG.19387.1,blat.proc3825174.chain_316	2
scaffold_52	retained_intron	1701	1786	-	asmbl_46523	none	Trinity_GG_16867_c0_g1_i1,blat.proc3825162.chain_3233	2	STRG.30060.1,STRG.30060.2,blat.proc3825162.chain_3235,blat.proc3825162.chain_3236	4
scaffold_12	alternate_exon	14188526	14188723	-	asmbl_8995,asmbl_8997	none	STRG.15259.1,blat.proc3825156.chain_61,blat.proc3825156.chain_62	3	STRG.15259.2,STRG.15259.3	2
scaffold_16	alt_donor	9632275	9632276	-	asmbl_17292	none	Trinity_GG_10988_c0_g1_i2,blat.proc3825158.chain_694	2	STRG.19561.1,Trinity_GG_10988_c0_g1_i1,blat.proc3825158.chain_693	3
scaffold_3	ends_in_intron	17145534	17145534	+	asmbl_40655,asmbl_40657	none	STRG.3958.2,STRG.3958.4	2	STRG.3958.1,blat.proc3825166.chain_460	2
scaffold_18	spliced_intron	822928	823047	+	asmbl_20326,asmbl_20327,asmbl_20329	none	STRG.21008.1,STRG.21008.2,blat.proc3825174.chain_1871,blat.proc3825174.chain_1872,blat.proc3825174.chain_1873	5	blat.proc3825174.chain_1874	1
scaffold_7	starts_in_intron	12650635	12650635	-	asmbl_51261	none	STRG.9385.2	1	STRG.9385.3	1
scaffold_2	spliced_intron	13445747	13445853	-	asmbl_23516,asmbl_23517	none	STRG.2363.1,blat.proc3825148.chain_2360,blat.proc3825148.chain_2363	3	blat.proc3825148.chain_2361	1
scaffold_3	starts_in_intron	3727875	3727875	+	asmbl_39964	none	blat.proc3825164.chain_3320	1	STRG.3093.1,blat.proc3825164.chain_3319	2
scaffold_5	spliced_intron	11644624	11644686	+	asmbl_45756	none	STRG.6426.1	1	STRG.6426.2,blat.proc3825166.chain_2586	2
scaffold_17	retained_intron	9942619	9942696	+	asmbl_19132,asmbl_19133	none	blat.proc3825174.chain_1470,blat.proc3825174.chain_1472	2	STRG.20612.1,Trinity_GG_28597_c0_g1_i2,Trinity_GG_28597_c0_g1_i3,blat.proc3825174.chain_1468,blat.proc3825174.chain_1469,blat.proc3825174.chain_1471	6
scaffold_27	alternate_exon	6196555	6199235	+	asmbl_36378,asmbl_36380	none	STRG.29014.1,STRG.29014.4,Trinity_GG_33358_c0_g1_i1,blat.proc3825178.chain_2197	4	STRG.29014.2	1
scaffold_6	spliced_intron	13229076	13229383	+	asmbl_47503,asmbl_47505,asmbl_47509	none	STRG.8084.1,blat.proc3825168.chain_573,blat.proc3825168.chain_574,blat.proc3825168.chain_576	4	STRG.8084.2,STRG.8084.3,STRG.8084.5,STRG.8084.8,Trinity_GG_21752_c0_g1_i9,blat.proc3825168.chain_570,blat.proc3825168.chain_578	7
scaffold_2	spliced_intron	15272780	15272879	+	asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	8	blat.proc3825164.chain_2620,blat.proc3825164.chain_2622	2
scaffold_1	alt_donor	9254137	9254138	+	asmbl_1967	none	STRG.619.3,Trinity_GG_17679_c0_g1_i3,blat.proc3825164.chain_721	3	STRG.619.4,Trinity_GG_17679_c0_g1_i4,blat.proc3825164.chain_723	3
scaffold_2	retained_intron	1301947	1302080	+	asmbl_24178	none	STRG.1609.2,Trinity_GG_18242_c0_g1_i1,blat.proc3825164.chain_1789	3	STRG.1609.3,Trinity_GG_18242_c0_g1_i2,blat.proc3825164.chain_1790	3
scaffold_4	alt_donor	8410355	8410356	+	asmbl_41558	none	STRG.4671.1,Trinity_GG_19884_c0_g1_i3,blat.proc3825166.chain_1087	3	STRG.4671.2,Trinity_GG_19884_c0_g1_i2,blat.proc3825166.chain_1088	3
scaffold_5	starts_in_intron	2535698	2535698	+	asmbl_45172,asmbl_45174	none	STRG.5779.2,STRG.5779.3	2	STRG.5779.1,blat.proc3825166.chain_2002,blat.proc3825166.chain_2003	3
scaffold_12	skipped_exon	10605684	10607034	+	asmbl_7945,asmbl_7947	none	STRG.15036.1,STRG.15036.4,blat.proc3825170.chain_3579	3	STRG.15036.2,blat.proc3825170.chain_3580	2
scaffold_4	skipped_exon	5651119	5651635	-	asmbl_42621	none	STRG.4472.4,blat.proc3825150.chain_665	2	STRG.4472.1,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_666,blat.proc3825150.chain_667	6
scaffold_20	ends_in_intron	1571618	1571618	+	asmbl_26430	none	Trinity_GG_29891_c0_g1_i5	1	STRG.22885.2	1
scaffold_24	starts_in_intron	1232255	1232255	-	asmbl_32721	none	blat.proc3825160.chain_3485	1	blat.proc3825160.chain_3482	1
scaffold_8	alt_donor	12411180	12411181	+	asmbl_53308,asmbl_53312	none	STRG.10430.2,STRG.10430.3,Trinity_GG_23094_c0_g1_i1,blat.proc3825168.chain_2954	4	STRG.10430.1	1
scaffold_6	spliced_intron	13246578	13246726	-	asmbl_48901,asmbl_48902	none	STRG.8085.1,STRG.8085.2	2	blat.proc3825152.chain_501	1
scaffold_6	alt_donor	837955	837956	+	asmbl_46678	none	STRG.7145.2	1	STRG.7145.1,Trinity_GG_21242_c0_g1_i1,blat.proc3825166.chain_3342	3
scaffold_6	alt_acceptor	13273352	13273353	+	asmbl_47513,asmbl_47514,asmbl_47517	none	STRG.8090.2,STRG.8090.4,STRG.8090.5,blat.proc3825168.chain_517,blat.proc3825168.chain_518	5	STRG.8090.3	1
scaffold_4	starts_in_intron	19600769	19600769	-	asmbl_43465	none	STRG.5546.1	1	STRG.5546.2	1
scaffold_111	skipped_exon	6874	7192	+	asmbl_7393	none	Trinity_GG_34009_c2_g1_i1,blat.proc3825162.chain_3488,blat.proc3825178.chain_3274	3	STRG.30157.1,Trinity_GG_34009_c2_g1_i2,blat.proc3825178.chain_3273	3
scaffold_4	alt_donor	18998183	18998184	+	asmbl_42119	none	STRG.5478.2,blat.proc3825166.chain_1781	2	STRG.5478.1,blat.proc3825166.chain_1782	2
scaffold_9	starts_in_intron	11844616	11844616	-	asmbl_55328,asmbl_55329,asmbl_55331,asmbl_55332,asmbl_55333	none	blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3661,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	5	STRG.11513.1,blat.proc3825152.chain_3660,blat.proc3825152.chain_3662	3
scaffold_13	starts_in_intron	6615865	6615865	+	asmbl_10955	none	blat.proc3825172.chain_680	1	STRG.15957.1,blat.proc3825172.chain_681,blat.proc3825172.chain_682,blat.proc3825172.chain_683	4
scaffold_13	alt_donor	6114510	6114511	+	asmbl_10914,asmbl_10915	none	STRG.15920.2,blat.proc3825172.chain_620	2	STRG.15920.1,blat.proc3825172.chain_621	2
scaffold_7	starts_in_intron	5097064	5097064	+	asmbl_49783	none	Trinity_GG_22186_c0_g2_i1,blat.proc3825168.chain_1323	2	STRG.8853.1,blat.proc3825168.chain_1322	2
scaffold_22	starts_in_intron	4567265	4567265	+	asmbl_30022	none	blat.proc3825176.chain_1980	1	STRG.24886.1,blat.proc3825176.chain_1978,blat.proc3825176.chain_1979	3
scaffold_6	spliced_intron	8175225	8175459	-	asmbl_48543,asmbl_48544	none	blat.proc3825152.chain_91,blat.proc3825152.chain_92	2	STRG.7706.1,Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_95	6
scaffold_15	spliced_intron	6794505	6794579	+	asmbl_15262,asmbl_15263	none	STRG.18296.1,STRG.18296.2,Trinity_GG_27307_c0_g1_i1,Trinity_GG_27307_c0_g1_i2,blat.proc3825172.chain_2910,blat.proc3825172.chain_2911	6	STRG.18296.3	1
scaffold_7	alt_donor	4915758	4915759	+	asmbl_49760	none	STRG.8836.4	1	STRG.8836.2,STRG.8836.3	2
scaffold_3	starts_in_intron	1765383	1765383	+	asmbl_39879,asmbl_39881	none	STRG.2994.3,Trinity_GG_19006_c0_g1_i1,blat.proc3825164.chain_3230	3	STRG.2994.1,STRG.2994.2	2
scaffold_28	skipped_exon	5390808	5391169	+	asmbl_37586	none	Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868	2	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,blat.proc3825178.chain_2869	4
scaffold_7	alt_donor	15269933	15269934	+	asmbl_50427,asmbl_50428,asmbl_50429,asmbl_50430,asmbl_50431,asmbl_50432,asmbl_50433	none	STRG.9546.1,STRG.9546.2,STRG.9546.3,blat.proc3825168.chain_2120,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2125	7	STRG.9546.4,blat.proc3825168.chain_2121	2
scaffold_7	retained_intron	2490307	2490441	+	asmbl_49645,asmbl_49646	none	STRG.8684.1,STRG.8684.2,Trinity_GG_22100_c0_g1_i6	3	blat.proc3825168.chain_1193,blat.proc3825168.chain_1194,blat.proc3825168.chain_1195	3
scaffold_26	retained_exon	6351157	6351208	-	asmbl_35683	none	STRG.28335.3	1	STRG.28335.5	1
scaffold_17	retained_intron	9531820	9532391	+	asmbl_19108,asmbl_19109	none	blat.proc3825174.chain_1398,blat.proc3825174.chain_1401	2	STRG.20578.1,STRG.20578.2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1403	6
scaffold_5	retained_exon	12532513	12533674	-	asmbl_44463,asmbl_44464,asmbl_44466	none	STRG.6499.1,STRG.6499.3,blat.proc3825150.chain_2699	3	STRG.6499.2	1
scaffold_4	alt_acceptor	14632367	14632368	-	asmbl_43056	none	STRG.5089.1,blat.proc3825150.chain_1215	2	STRG.5089.2	1
scaffold_5	alternate_exon	18830970	18831075	+	asmbl_46296	none	STRG.7012.3	1	STRG.7012.1,STRG.7012.2,Trinity_GG_21167_c0_g1_i1,Trinity_GG_21167_c0_g1_i2,blat.proc3825166.chain_3224,blat.proc3825166.chain_3225	6
scaffold_19	retained_intron	11483212	11483614	-	asmbl_22404	none	STRG.22486.1,blat.proc3825158.chain_3250	2	blat.proc3825158.chain_3244	1
scaffold_12	alt_donor	16412989	16412990	+	asmbl_8179	none	STRG.15397.1,blat.proc3825172.chain_36	2	STRG.15397.2,blat.proc3825172.chain_35	2
scaffold_1	alternate_exon	12930510	12930541	+	asmbl_2278	none	STRG.928.2,Trinity_GG_17884_c0_g1_i2,blat.proc3825164.chain_1102	3	STRG.928.1	1
scaffold_7	spliced_intron	11987431	11987607	-	asmbl_51181	none	STRG.9304.2,blat.proc3825152.chain_1643	2	STRG.9304.1,blat.proc3825152.chain_1642	2
scaffold_6	starts_in_intron	3821697	3821697	+	asmbl_46873	none	Trinity_GG_21342_c0_g1_i3,blat.proc3825166.chain_3542	2	STRG.7387.1,STRG.7387.2,Trinity_GG_21342_c0_g1_i2,blat.proc3825166.chain_3543,blat.proc3825166.chain_3544	5
scaffold_4	spliced_intron	19128360	19128385	+	asmbl_42123	none	STRG.5496.2,blat.proc3825166.chain_1777	2	STRG.5496.1	1
scaffold_2	alternate_exon	6517577	6517628	+	asmbl_24475	none	STRG.2022.5,blat.proc3825164.chain_2143	2	STRG.2022.1,STRG.2022.2,STRG.2022.3,STRG.2022.4,Trinity_GG_18449_c0_g1_i2	5
scaffold_16	alt_acceptor	9562826	9562827	+	asmbl_16493	none	STRG.19555.1,blat.proc3825174.chain_464	2	blat.proc3825174.chain_466	1
scaffold_2	spliced_intron	7894830	7894910	+	asmbl_24589,asmbl_24591,asmbl_24597	none	STRG.2085.1,blat.proc3825164.chain_2201,blat.proc3825164.chain_2206,blat.proc3825164.chain_2208,blat.proc3825164.chain_2211	5	STRG.2085.2,STRG.2085.3,Trinity_GG_18472_c0_g1_i8,blat.proc3825164.chain_2202,blat.proc3825164.chain_2203,blat.proc3825164.chain_2205,blat.proc3825164.chain_2207,blat.proc3825164.chain_2210	8
scaffold_6	alternate_exon	10822363	10822684	-	asmbl_48709	none	STRG.7897.2,blat.proc3825152.chain_289	2	STRG.7897.1,blat.proc3825152.chain_288	2
scaffold_21	alt_donor	5490734	5490735	-	asmbl_27661	none	STRG.24081.2	1	STRG.24081.1,blat.proc3825160.chain_1246,blat.proc3825160.chain_1247	3
scaffold_4	starts_in_intron	3233103	3233103	-	asmbl_42419	none	blat.proc3825150.chain_458	1	STRG.4248.1	1
scaffold_22	retained_exon	7249211	7249237	-	asmbl_29386	none	STRG.25063.1	1	STRG.25063.2,STRG.25063.3	2
scaffold_3	alt_acceptor	4904494	4904495	+	asmbl_40042	none	STRG.3185.1,blat.proc3825164.chain_3451	2	STRG.3185.2,blat.proc3825164.chain_3452	2
scaffold_3	alternate_exon	7592346	7592544	+	asmbl_40168	none	Trinity_GG_19221_c0_g1_i1,blat.proc3825164.chain_3626	2	Trinity_GG_19221_c0_g1_i6,blat.proc3825164.chain_3628	2
scaffold_5	retained_exon	11630429	11630545	-	asmbl_44420	none	blat.proc3825150.chain_2641	1	blat.proc3825150.chain_2643	1
scaffold_23	ends_in_intron	5310272	5310272	+	asmbl_31559,asmbl_31561	none	STRG.25910.1,blat.proc3825176.chain_2854,blat.proc3825176.chain_2856	3	STRG.25910.2,blat.proc3825176.chain_2857	2
scaffold_27	alt_acceptor	3019961	3019962	+	asmbl_36163	none	STRG.28790.2	1	STRG.28790.1	1
scaffold_8	retained_intron	17284211	17284287	-	asmbl_52439	none	blat.proc3825152.chain_2857	1	STRG.10651.1,blat.proc3825152.chain_2859	2
scaffold_4	retained_intron	3237335	3237423	-	asmbl_42422	none	Trinity_GG_2372_c0_g1_i5,Trinity_GG_2372_c0_g1_i7,blat.proc3825150.chain_492,blat.proc3825150.chain_494	4	STRG.4249.3	1
scaffold_23	alt_acceptor	5584092	5584093	+	asmbl_31586,asmbl_31587,asmbl_31590	none	STRG.25931.1,STRG.25931.3,STRG.25931.4,Trinity_GG_31582_c0_g1_i1,blat.proc3825176.chain_2800,blat.proc3825176.chain_2802	6	STRG.25931.2	1
scaffold_25	retained_intron	3755005	3755481	+	asmbl_33463	none	STRG.27328.2,blat.proc3825178.chain_420	2	STRG.27328.1,blat.proc3825178.chain_421,blat.proc3825178.chain_422	3
scaffold_21	alt_donor	7607691	7607692	+	asmbl_28756	none	STRG.24303.1,blat.proc3825176.chain_1521	2	STRG.24303.2,blat.proc3825176.chain_1522	2
scaffold_14	alt_donor	6450529	6450530	-	asmbl_13135	none	STRG.17095.2	1	STRG.17095.1,Trinity_GG_9602_c0_g1_i3,blat.proc3825156.chain_1920,blat.proc3825156.chain_1921,blat.proc3825156.chain_1922	5
scaffold_23	alt_donor	806766	806767	-	asmbl_30612	none	blat.proc3825160.chain_2754	1	STRG.25583.1,STRG.25583.2,STRG.25583.3	3
scaffold_1	spliced_intron	8990419	8991134	-	asmbl_509	none	blat.proc3825148.chain_594	1	STRG.598.1,blat.proc3825148.chain_595	2
scaffold_4	retained_intron	17032148	17032361	+	asmbl_42026	none	blat.proc3825166.chain_1653	1	STRG.5301.2,STRG.5301.3,blat.proc3825166.chain_1654	3
scaffold_6	alt_acceptor	7516493	7516494	-	asmbl_48496,asmbl_48498	none	STRG.7655.3,STRG.7655.5,blat.proc3825152.chain_14	3	STRG.7655.1,STRG.7655.4,blat.proc3825152.chain_11,blat.proc3825152.chain_13	4
scaffold_5	spliced_intron	19444958	19445069	-	asmbl_44913	none	STRG.7047.2,Trinity_GG_3921_c0_g1_i2,blat.proc3825150.chain_3153	3	STRG.7047.1,Trinity_GG_3921_c0_g1_i1,blat.proc3825150.chain_3152	3
scaffold_24	starts_in_intron	6066702	6066702	+	asmbl_32280	none	Trinity_GG_32057_c2_g1_i1,blat.proc3825176.chain_3626	2	STRG.26664.1,blat.proc3825176.chain_3624	2
scaffold_27	retained_intron	7522152	7522244	+	asmbl_36466	none	STRG.29117.3	1	STRG.29117.4	1
scaffold_16	alt_acceptor	10745586	10745587	+	asmbl_16552,asmbl_16553	none	STRG.19627.1,STRG.19627.2,Trinity_GG_28064_c0_g1_i1,Trinity_GG_28064_c0_g1_i2,blat.proc3825174.chain_551,blat.proc3825174.chain_552	6	STRG.19627.3	1
scaffold_2	spliced_intron	14132199	14132279	-	asmbl_23558,asmbl_23560	none	STRG.2408.1,blat.proc3825148.chain_2402,blat.proc3825148.chain_2403	3	blat.proc3825148.chain_2401	1
scaffold_7	skipped_exon	12268983	12270353	+	asmbl_50235	none	STRG.9326.2,blat.proc3825168.chain_1806	2	STRG.9326.1,STRG.9326.3,STRG.9326.4,Trinity_GG_22467_c0_g1_i1,Trinity_GG_22467_c0_g1_i3,Trinity_GG_22467_c0_g1_i4,Trinity_GG_22467_c0_g1_i5,blat.proc3825168.chain_1798,blat.proc3825168.chain_1801,blat.proc3825168.chain_1802,blat.proc3825168.chain_1803,blat.proc3825168.chain_1804	12
scaffold_2	spliced_intron	6520144	6520227	+	asmbl_24472,asmbl_24473,asmbl_24474,asmbl_24475,asmbl_24477	none	STRG.2022.1,STRG.2022.2,STRG.2022.3,STRG.2022.4,STRG.2022.5,Trinity_GG_18449_c0_g1_i2,blat.proc3825164.chain_2143	7	Trinity_GG_18449_c0_g1_i1,blat.proc3825164.chain_2142	2
scaffold_5	starts_in_intron	9820074	9820074	+	asmbl_45651	none	Trinity_GG_20715_c0_g1_i1	1	STRG.6301.1,blat.proc3825166.chain_2442	2
scaffold_1	alternate_exon	9194469	9194506	+	asmbl_1959,asmbl_1960	none	STRG.610.1,STRG.610.2,Trinity_GG_17701_c0_g1_i1,Trinity_GG_17701_c0_g1_i2,blat.proc3825164.chain_756,blat.proc3825164.chain_757	6	STRG.610.3	1
scaffold_2	spliced_intron	19299385	19299486	-	asmbl_23861	none	STRG.2798.2,blat.proc3825148.chain_2690	2	STRG.2798.1,Trinity_GG_1511_c0_g1_i1,blat.proc3825148.chain_2685,blat.proc3825148.chain_2686,blat.proc3825148.chain_2689	5
scaffold_14	alt_donor	583074	583075	+	asmbl_11769,asmbl_11772	none	STRG.16740.3,Trinity_GG_26527_c0_g1_i1,blat.proc3825172.chain_1519	3	STRG.16740.2	1
scaffold_10	retained_exon	6598212	6598281	-	asmbl_4478	none	STRG.12480.2	1	STRG.12480.1,blat.proc3825154.chain_991,blat.proc3825154.chain_992	3
scaffold_3	ends_in_intron	11504821	11504821	+	asmbl_40353	none	Trinity_GG_19340_c0_g1_i3,blat.proc3825166.chain_104	2	STRG.3587.1,Trinity_GG_19340_c0_g1_i2,blat.proc3825166.chain_103,blat.proc3825166.chain_106	4
scaffold_25	alt_acceptor	1296837	1296838	+	asmbl_33371	none	blat.proc3825162.chain_540	1	STRG.27172.1	1
scaffold_4	alternate_exon	980392	980464	-	asmbl_42354	none	STRG.4153.1	1	STRG.4153.2,Trinity_GG_2282_c0_g1_i1,blat.proc3825150.chain_316	3
scaffold_22	skipped_exon	4232080	4232451	-	asmbl_29213,asmbl_29222,asmbl_29227	none	STRG.24845.3,blat.proc3825160.chain_2070,blat.proc3825160.chain_2075,blat.proc3825160.chain_2079	4	STRG.24845.1,STRG.24845.2,blat.proc3825160.chain_2069,blat.proc3825160.chain_2071,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078	6
scaffold_2	alt_acceptor	888814	888815	+	asmbl_24130	none	blat.proc3825164.chain_1714	1	STRG.1565.5,blat.proc3825164.chain_1715	2
scaffold_14	alt_acceptor	3226988	3226989	+	asmbl_11926,asmbl_11927	none	STRG.16910.1,STRG.16910.3	2	STRG.16910.2	1
scaffold_6	ends_in_intron	880277	880277	-	asmbl_48086	none	STRG.7154.2	1	STRG.7154.1,blat.proc3825150.chain_3275	2
scaffold_1	ends_in_intron	11825287	11825287	+	asmbl_2157	none	blat.proc3825164.chain_989	1	STRG.801.1,STRG.801.2,Trinity_GG_17822_c0_g1_i1,Trinity_GG_17822_c0_g1_i3,blat.proc3825164.chain_986,blat.proc3825164.chain_987	6
scaffold_28	retained_intron	5611216	5611372	-	asmbl_38298,asmbl_38300,asmbl_38302,asmbl_38303	none	STRG.29697.1,STRG.29697.4,STRG.29697.5,blat.proc3825162.chain_2899,blat.proc3825162.chain_2901	5	STRG.29697.3,Trinity_GG_16664_c0_g1_i8,blat.proc3825162.chain_2902	3
scaffold_13	retained_intron	7216203	7216365	+	asmbl_11022,asmbl_11023,asmbl_11024,asmbl_11025	none	blat.proc3825172.chain_810,blat.proc3825172.chain_811,blat.proc3825172.chain_812,blat.proc3825172.chain_814	4	STRG.16019.1,blat.proc3825172.chain_809,blat.proc3825172.chain_813,blat.proc3825172.chain_815,blat.proc3825172.chain_816	5
scaffold_10	spliced_intron	5390028	5390517	+	asmbl_3166	none	STRG.12365.2,blat.proc3825170.chain_1032	2	Trinity_GG_24154_c0_g1_i2,blat.proc3825170.chain_1034	2
scaffold_23	starts_in_intron	5757877	5757877	+	asmbl_31598	none	Trinity_GG_31624_c1_g1_i2	1	STRG.25946.1,Trinity_GG_31624_c1_g1_i1,blat.proc3825176.chain_2881	3
scaffold_4	alternate_exon	19678797	19678878	+	asmbl_42157	none	STRG.5559.1	1	STRG.5559.2,STRG.5559.3,Trinity_GG_20342_c0_g1_i2,Trinity_GG_20342_c0_g1_i3,blat.proc3825166.chain_1806,blat.proc3825166.chain_1807	6
scaffold_7	ends_in_intron	15270505	15270505	+	asmbl_50426	none	blat.proc3825168.chain_2124	1	STRG.9546.1,STRG.9546.2,STRG.9546.3,STRG.9546.4,blat.proc3825168.chain_2120,blat.proc3825168.chain_2121,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2125	9
scaffold_12	alt_acceptor	5463740	5463741	-	asmbl_8497,asmbl_8498,asmbl_8499,asmbl_8500	none	STRG.14703.1,STRG.14703.2,STRG.14703.3,STRG.14703.4,blat.proc3825154.chain_3235,blat.proc3825154.chain_3236,blat.proc3825154.chain_3237	7	STRG.14703.5	1
scaffold_16	alt_acceptor	14489467	14489468	+	asmbl_16682,asmbl_16683	none	STRG.19826.2,blat.proc3825174.chain_747	2	STRG.19826.1	1
scaffold_25	alternate_exon	6161047	6161305	+	asmbl_33595	none	STRG.27502.1	1	STRG.27502.4	1
scaffold_28	alternate_exon	7154144	7154388	+	asmbl_37633	none	STRG.29775.1,blat.proc3825178.chain_2928	2	STRG.29775.2,blat.proc3825178.chain_2927	2
scaffold_22	alt_acceptor	708590	708591	-	asmbl_29117,asmbl_29118	none	STRG.24724.1,STRG.24724.2,blat.proc3825160.chain_1884,blat.proc3825160.chain_1885	4	blat.proc3825160.chain_1886	1
scaffold_24	ends_in_intron	277860	277860	-	asmbl_32703	none	STRG.26327.3	1	STRG.26327.1,STRG.26327.2,Trinity_GG_14724_c0_g1_i1,blat.proc3825160.chain_3465	4
scaffold_15	alt_donor	4964468	4964469	+	asmbl_15176,asmbl_15179,asmbl_15180,asmbl_15183	none	Trinity_GG_27299_c0_g1_i8,Trinity_GG_27299_c0_g1_i9,blat.proc3825172.chain_2890,blat.proc3825172.chain_2892,blat.proc3825172.chain_2893,blat.proc3825172.chain_2895	6	STRG.18207.1,STRG.18207.2,STRG.18207.3,blat.proc3825172.chain_2889,blat.proc3825172.chain_2891	5
scaffold_6	alternate_exon	10823241	10823570	-	asmbl_48710	none	STRG.7897.1,blat.proc3825152.chain_288	2	STRG.7897.2,blat.proc3825152.chain_289	2
scaffold_7	ends_in_intron	223054	223054	-	asmbl_50677,asmbl_50680	none	Trinity_GG_4927_c0_g1_i3,Trinity_GG_4927_c0_g1_i4,blat.proc3825152.chain_1084,blat.proc3825152.chain_1085	4	Trinity_GG_4927_c0_g1_i1,blat.proc3825152.chain_1087	2
scaffold_17	alternate_exon	791760	791911	+	asmbl_18577	none	STRG.19934.3	1	blat.proc3825174.chain_823	1
scaffold_5	alt_donor	4773756	4773757	-	asmbl_44011	none	STRG.5941.1	1	STRG.5941.3,STRG.5941.4	2
scaffold_28	alt_donor	7884669	7884670	+	asmbl_37714	none	STRG.29858.2	1	STRG.29858.1,Trinity_GG_33828_c0_g1_i1,blat.proc3825178.chain_2975	3
scaffold_13	spliced_intron	2271430	2271533	-	asmbl_9437,asmbl_9439,asmbl_9440,asmbl_9442,asmbl_9443,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_393,blat.proc3825156.chain_395,blat.proc3825156.chain_397,blat.proc3825156.chain_398,blat.proc3825156.chain_399,blat.proc3825156.chain_400	15	STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_394	5
scaffold_6	alternate_exon	10254698	10256040	-	asmbl_48681	none	STRG.7870.1,blat.proc3825152.chain_241	2	STRG.7870.2	1
scaffold_6	starts_in_intron	2823716	2823716	-	asmbl_48166	none	blat.proc3825150.chain_3372	1	STRG.7276.1,blat.proc3825150.chain_3371	2
scaffold_8	retained_exon	15335814	15336002	+	asmbl_53400	none	STRG.10559.2,blat.proc3825168.chain_3089	2	STRG.10559.1,blat.proc3825168.chain_3090	2
scaffold_17	spliced_intron	7671529	7672234	+	asmbl_18917	none	STRG.20406.1,blat.proc3825174.chain_1188	2	Trinity_GG_28458_c0_g1_i1,blat.proc3825174.chain_1187	2
scaffold_17	starts_in_intron	6593935	6593935	+	asmbl_18859	none	blat.proc3825174.chain_1098	1	STRG.20311.1,blat.proc3825174.chain_1096	2
scaffold_12	alternate_exon	2920428	2926726	-	asmbl_8332	none	STRG.14526.1	1	STRG.14526.5	1
scaffold_4	starts_in_intron	307046	307046	-	asmbl_42324	none	STRG.4129.2,Trinity_GG_2302_c0_g2_i1,blat.proc3825150.chain_364	3	STRG.4129.1,STRG.4129.3,Trinity_GG_2302_c0_g1_i1,Trinity_GG_2302_c0_g1_i2,blat.proc3825150.chain_361,blat.proc3825150.chain_362	6
scaffold_13	ends_in_intron	385268	385268	-	asmbl_9330	none	Trinity_GG_8662_c0_g1_i1,blat.proc3825156.chain_288	2	STRG.15438.1,STRG.15438.2,blat.proc3825156.chain_284,blat.proc3825156.chain_287	4
scaffold_15	alt_donor	5457694	5457695	-	asmbl_14208	none	STRG.18235.2,blat.proc3825156.chain_3103	2	STRG.18235.1,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	3
scaffold_28	spliced_intron	230628	230710	+	asmbl_37255,asmbl_37256,asmbl_37258,asmbl_37259	none	STRG.29253.1,STRG.29253.2,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483,blat.proc3825178.chain_2485	5	blat.proc3825178.chain_2480	1
scaffold_10	ends_in_intron	343356	343356	-	asmbl_3942	none	blat.proc3825154.chain_449	1	STRG.11919.1,STRG.11919.2,blat.proc3825154.chain_450,blat.proc3825154.chain_452	4
scaffold_8	retained_exon	9882143	9882528	+	asmbl_53129	none	STRG.10236.1,blat.proc3825168.chain_2804	2	STRG.10236.2,blat.proc3825168.chain_2802	2
scaffold_26	spliced_intron	3623024	3623045	+	asmbl_34802	none	STRG.28042.3	1	Trinity_GG_32782_c1_g1_i1	1
scaffold_13	starts_in_intron	12253509	12253509	+	asmbl_11355	none	STRG.16359.4	1	STRG.16359.1,STRG.16359.2,STRG.16359.3,Trinity_GG_26285_c0_g1_i1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1113,blat.proc3825172.chain_1114,blat.proc3825172.chain_1115	8
scaffold_4	spliced_intron	1307873	1308003	+	asmbl_41105	none	STRG.4170.2,blat.proc3825166.chain_606	2	STRG.4170.1,Trinity_GG_19626_c0_g1_i1,blat.proc3825166.chain_607	3
scaffold_24	retained_intron	10597325	10597404	-	asmbl_33213	none	blat.proc3825162.chain_362	1	STRG.27020.1,blat.proc3825162.chain_363	2
scaffold_5	retained_exon	2608955	2608996	+	asmbl_45188	none	STRG.5788.1,blat.proc3825166.chain_2012	2	blat.proc3825166.chain_2013	1
scaffold_28	spliced_intron	295957	296054	+	asmbl_37267,asmbl_37268,asmbl_37269,asmbl_37270,asmbl_37271	none	STRG.29263.1,STRG.29263.2,STRG.29263.3,blat.proc3825178.chain_2488,blat.proc3825178.chain_2489,blat.proc3825178.chain_2490,blat.proc3825178.chain_2492	7	blat.proc3825178.chain_2491	1
scaffold_2	starts_in_intron	7218560	7218560	+	asmbl_24540,asmbl_24544,asmbl_24549	none	STRG.2054.6,Trinity_GG_18495_c0_g1_i12,Trinity_GG_18495_c0_g1_i13,Trinity_GG_18495_c0_g1_i2,blat.proc3825164.chain_2267,blat.proc3825164.chain_2269,blat.proc3825164.chain_2270	7	STRG.2054.1,STRG.2054.5,Trinity_GG_18495_c0_g1_i4,blat.proc3825164.chain_2266,blat.proc3825164.chain_2274	5
scaffold_10	starts_in_intron	166359	166359	+	asmbl_2844	none	Trinity_GG_23937_c0_g1_i2,blat.proc3825170.chain_672	2	STRG.11906.1,blat.proc3825170.chain_671	2
scaffold_20	spliced_intron	8167955	8168079	+	asmbl_26748	none	STRG.23366.2	1	blat.proc3825176.chain_501	1
scaffold_1	starts_in_intron	11745316	11745316	+	asmbl_2142	none	Trinity_GG_17813_c0_g1_i2,blat.proc3825164.chain_972	2	STRG.789.1,blat.proc3825164.chain_971,blat.proc3825164.chain_973	3
scaffold_8	retained_exon	6162464	6162711	-	asmbl_51870	none	STRG.10030.4	1	STRG.10030.1,STRG.10030.3,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275	7
scaffold_1	alternate_exon	14202391	14203297	+	asmbl_2344,asmbl_2348	none	STRG.1008.1,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1192	5	Trinity_GG_17929_c0_g1_i1,Trinity_GG_17929_c0_g1_i4,blat.proc3825164.chain_1187,blat.proc3825164.chain_1189,blat.proc3825164.chain_1195	5
scaffold_15	alt_donor	9053596	9053597	-	asmbl_14369	none	STRG.18459.3,Trinity_GG_10368_c2_g1_i1,blat.proc3825156.chain_3316,blat.proc3825156.chain_3325	4	STRG.18459.2,blat.proc3825156.chain_3318	2
scaffold_5	alt_acceptor	17297537	17297538	+	asmbl_46158,asmbl_46160	none	STRG.6909.2,STRG.6909.3,blat.proc3825166.chain_3086	3	STRG.6909.1,blat.proc3825166.chain_3087	2
scaffold_14	alt_acceptor	12626471	12626472	-	asmbl_13585	none	blat.proc3825156.chain_2423	1	STRG.17582.1,STRG.17582.2,STRG.17582.3,STRG.17582.4,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	9
scaffold_18	alt_donor	2050939	2050940	-	asmbl_19692	none	STRG.21094.2	1	STRG.21094.1,STRG.21094.3,Trinity_GG_11827_c1_g1_i1,blat.proc3825158.chain_2074	4
scaffold_25	retained_intron	5157955	5158050	-	asmbl_34247	none	blat.proc3825162.chain_805	1	blat.proc3825162.chain_806	1
scaffold_17	alternate_exon	1287981	1290130	-	asmbl_17679,asmbl_17680,asmbl_17682,asmbl_17683,asmbl_17684	none	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_972,blat.proc3825158.chain_973,blat.proc3825158.chain_975,blat.proc3825158.chain_976	7	STRG.19964.6	1
scaffold_19	retained_intron	12492922	12493022	+	asmbl_21808,asmbl_21809,asmbl_21810	none	Trinity_GG_29809_c0_g1_i1,blat.proc3825174.chain_3627,blat.proc3825174.chain_3628	3	STRG.22590.2,STRG.22590.4,STRG.22590.5,blat.proc3825174.chain_3623,blat.proc3825174.chain_3624	5
scaffold_16	skipped_exon	7234374	7235710	-	asmbl_17170,asmbl_17173	none	STRG.19399.2,STRG.19399.5,blat.proc3825158.chain_476	3	STRG.19399.1,STRG.19399.3,STRG.19399.4	3
scaffold_13	alternate_exon	15510812	15510867	+	asmbl_11514	none	STRG.16593.3	1	STRG.16593.2	1
scaffold_21	retained_intron	256742	257073	-	asmbl_27285,asmbl_27292,asmbl_27293,asmbl_27294,asmbl_27297	none	STRG.23725.3,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_808,blat.proc3825160.chain_810	5	STRG.23725.1,STRG.23725.2,STRG.23725.6,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_813	8
scaffold_14	starts_in_intron	5631128	5631128	-	asmbl_13090	none	blat.proc3825156.chain_1855	1	STRG.17045.1,blat.proc3825156.chain_1854	2
scaffold_21	ends_in_intron	7383726	7383726	+	asmbl_28728	none	blat.proc3825176.chain_1373	1	STRG.24260.1,blat.proc3825176.chain_1374	2
scaffold_22	ends_in_intron	18269	18269	+	asmbl_29794	none	Trinity_GG_30921_c0_g1_i2,blat.proc3825176.chain_1747	2	STRG.24659.1,Trinity_GG_30921_c0_g1_i1,blat.proc3825176.chain_1746	3
scaffold_5	alternate_exon	10539720	10539915	-	asmbl_44363,asmbl_44364,asmbl_44365,asmbl_44368	none	STRG.6340.1,STRG.6340.3,STRG.6340.4,Trinity_GG_3563_c0_g1_i4,blat.proc3825150.chain_2535,blat.proc3825150.chain_2537,blat.proc3825150.chain_2538	7	Trinity_GG_3563_c0_g1_i7	1
scaffold_15	starts_in_intron	15120028	15120028	-	asmbl_14755	none	blat.proc3825158.chain_28	1	STRG.18904.1,blat.proc3825158.chain_27	2
scaffold_4	spliced_intron	6303061	6303375	+	asmbl_41389,asmbl_41390,asmbl_41391,asmbl_41394,asmbl_41395	none	STRG.4503.1,STRG.4503.2,Trinity_GG_19783_c0_g1_i1,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_919,blat.proc3825166.chain_920,blat.proc3825166.chain_921,blat.proc3825166.chain_922	10	Trinity_GG_19783_c1_g1_i1,blat.proc3825166.chain_924	2
scaffold_14	spliced_intron	2898639	2898894	+	asmbl_11893	none	STRG.16891.1,Trinity_GG_26600_c0_g1_i1,blat.proc3825172.chain_1665	3	Trinity_GG_26600_c0_g1_i3,blat.proc3825172.chain_1666	2
scaffold_6	starts_in_intron	71698	71698	+	asmbl_46629	none	Trinity_GG_21212_c0_g1_i1	1	STRG.7071.2,STRG.7071.3,blat.proc3825166.chain_3285,blat.proc3825166.chain_3286	4
scaffold_21	spliced_intron	6490693	6490848	+	asmbl_28650,asmbl_28651,asmbl_28653	none	STRG.24171.1,STRG.24171.2,STRG.24171.3,blat.proc3825176.chain_1384,blat.proc3825176.chain_1385	5	blat.proc3825176.chain_1386,blat.proc3825176.chain_1387	2
scaffold_11	retained_exon	5125187	5125245	-	asmbl_6654	none	STRG.13605.1,blat.proc3825154.chain_2108	2	STRG.13605.3	1
scaffold_9	alternate_exon	12112398	12113352	+	asmbl_54413	none	STRG.11537.3	1	STRG.11537.4,Trinity_GG_23763_c0_g1_i1,blat.proc3825170.chain_365	3
scaffold_4	retained_intron	12689403	12689673	-	asmbl_42950	none	Trinity_GG_2694_c0_g1_i1,blat.proc3825150.chain_1020	2	STRG.4910.1,STRG.4910.2,blat.proc3825150.chain_1019	3
scaffold_17	retained_intron	8321556	8321624	+	asmbl_18976	none	blat.proc3825174.chain_1234	1	STRG.20452.1,blat.proc3825174.chain_1233	2
scaffold_20	starts_in_intron	3997075	3997075	-	asmbl_25716	none	blat.proc3825160.chain_181	1	STRG.23095.1,blat.proc3825160.chain_182	2
scaffold_4	spliced_intron	9343784	9343976	-	asmbl_42807,asmbl_42808,asmbl_42810	none	STRG.4735.1,blat.proc3825150.chain_946,blat.proc3825150.chain_947,blat.proc3825150.chain_949	4	Trinity_GG_2650_c0_g1_i7,blat.proc3825150.chain_948	2
scaffold_20	spliced_intron	5115892	5116021	+	asmbl_26602	none	STRG.23147.1,Trinity_GG_30078_c0_g1_i5,blat.proc3825176.chain_325	3	Trinity_GG_30078_c0_g1_i7,blat.proc3825176.chain_326	2
scaffold_8	retained_intron	11848560	11850658	+	asmbl_53277	none	STRG.10390.2,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	3	blat.proc3825168.chain_3019,blat.proc3825168.chain_3023,blat.proc3825168.chain_3025,blat.proc3825168.chain_3027	4
scaffold_5	starts_in_intron	16314389	16314389	+	asmbl_46085	none	blat.proc3825166.chain_3011	1	STRG.6829.1,blat.proc3825166.chain_3010,blat.proc3825166.chain_3012	3
scaffold_4	retained_intron	10872473	10872693	-	asmbl_42862,asmbl_42864	none	blat.proc3825150.chain_986,blat.proc3825150.chain_987	2	STRG.4808.1,blat.proc3825150.chain_988,blat.proc3825150.chain_989	3
scaffold_6	alternate_exon	8469914	8470296	-	asmbl_48553	none	STRG.7726.2,blat.proc3825152.chain_80	2	STRG.7726.1,blat.proc3825152.chain_81	2
scaffold_21	spliced_intron	6617873	6617964	+	asmbl_28673,asmbl_28674,asmbl_28675,asmbl_28678	none	STRG.24188.1,STRG.24188.2,Trinity_GG_30735_c0_g2_i2,blat.proc3825176.chain_1434,blat.proc3825176.chain_1435,blat.proc3825176.chain_1436	6	Trinity_GG_30735_c0_g2_i3,blat.proc3825176.chain_1437	2
scaffold_27	alternate_exon	4803354	4803608	-	asmbl_36974	none	STRG.28921.4	1	STRG.28921.2,Trinity_GG_16204_c0_g1_i1	2
scaffold_5	retained_intron	15462792	15463060	-	asmbl_44676	none	Trinity_GG_3754_c1_g1_i1,blat.proc3825150.chain_2875	2	STRG.6732.1,STRG.6732.2,blat.proc3825150.chain_2873,blat.proc3825150.chain_2874	4
scaffold_18	alt_acceptor	2539009	2539010	+	asmbl_20415	none	STRG.21125.2	1	STRG.21125.1,blat.proc3825174.chain_2033	2
scaffold_4	skipped_exon	12628852	12629485	-	asmbl_42940	none	STRG.4902.3	1	STRG.4902.1,STRG.4902.2,blat.proc3825150.chain_1038,blat.proc3825150.chain_1039	4
scaffold_11	spliced_intron	17086528	17087549	-	asmbl_7250,asmbl_7252,asmbl_7253	none	STRG.14373.3,STRG.14373.4,blat.proc3825154.chain_2885	3	Trinity_GG_8018_c0_g2_i1,Trinity_GG_8018_c1_g1_i1,blat.proc3825154.chain_2888	3
scaffold_2	starts_in_intron	14276962	14276962	+	asmbl_24901	none	STRG.2428.4	1	STRG.2428.1,STRG.2428.2,STRG.2428.3,blat.proc3825164.chain_2591,blat.proc3825164.chain_2592,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596,blat.proc3825164.chain_2597	9
scaffold_6	spliced_intron	13005188	13005430	-	asmbl_48861	none	STRG.8068.7,blat.proc3825152.chain_494	2	STRG.8068.8,Trinity_GG_4595_c3_g1_i1,blat.proc3825152.chain_498	3
scaffold_16	alt_donor	4603722	4603723	+	asmbl_16188,asmbl_16190	none	STRG.19247.1,blat.proc3825174.chain_56,blat.proc3825174.chain_57	3	STRG.19247.2	1
scaffold_26	alt_donor	3082003	3082004	+	asmbl_34764,asmbl_34766	none	STRG.28002.1,blat.proc3825178.chain_1034,blat.proc3825178.chain_1035	3	STRG.28002.2	1
scaffold_9	alternate_exon	1649586	1650733	-	asmbl_54821	none	STRG.10852.1,blat.proc3825152.chain_3093	2	STRG.10852.2,blat.proc3825152.chain_3094	2
scaffold_13	alt_acceptor	2996936	2996937	+	asmbl_10645,asmbl_10646	none	STRG.15606.1,Trinity_GG_25895_c0_g1_i3,blat.proc3825172.chain_367,blat.proc3825172.chain_368	4	STRG.15606.2,STRG.15606.3	2
scaffold_4	alt_donor	996966	996967	-	asmbl_42358	none	STRG.4157.1,blat.proc3825150.chain_291	2	STRG.4157.2,blat.proc3825150.chain_290	2
scaffold_5	spliced_intron	11630266	11631086	-	asmbl_44418	none	blat.proc3825150.chain_2643	1	blat.proc3825150.chain_2638,blat.proc3825150.chain_2639	2
scaffold_26	starts_in_intron	8634304	8634304	-	asmbl_35745	none	blat.proc3825162.chain_1654	1	STRG.28453.1,blat.proc3825162.chain_1655	2
scaffold_2	ends_in_intron	14221268	14221268	-	asmbl_23581	none	Trinity_GG_1311_c1_g1_i1,blat.proc3825148.chain_2359	2	STRG.2418.2	1
scaffold_22	spliced_intron	11544027	11544174	+	asmbl_30405	none	STRG.25505.1	1	STRG.25505.2	1
scaffold_6	retained_intron	13229076	13229383	+	asmbl_47495,asmbl_47496,asmbl_47497,asmbl_47498	none	STRG.8084.2,STRG.8084.3,STRG.8084.5,STRG.8084.8,Trinity_GG_21752_c0_g1_i9,blat.proc3825168.chain_570,blat.proc3825168.chain_578	7	STRG.8084.1,blat.proc3825168.chain_573,blat.proc3825168.chain_574,blat.proc3825168.chain_576	4
scaffold_14	spliced_intron	399142	399238	+	asmbl_11747,asmbl_11748,asmbl_11750	none	STRG.16734.1,STRG.16734.2,STRG.16734.4,Trinity_GG_26526_c0_g1_i23,blat.proc3825172.chain_1504	5	STRG.16734.5,STRG.16734.6	2
scaffold_1	alternate_exon	20338266	20348389	+	asmbl_2619	none	STRG.1396.1,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	3	STRG.1396.6	1
scaffold_9	retained_exon	8043171	8043257	-	asmbl_55118	none	STRG.11238.1,Trinity_GG_6230_c1_g1_i3,blat.proc3825152.chain_3486	3	STRG.11238.2,Trinity_GG_6230_c1_g1_i1,blat.proc3825152.chain_3485	3
scaffold_11	starts_in_intron	3189507	3189507	-	asmbl_6538	none	blat.proc3825154.chain_1993	1	STRG.13450.1,blat.proc3825154.chain_1992	2
scaffold_16	alt_acceptor	5515684	5515685	-	asmbl_17125	none	STRG.19311.1,Trinity_GG_10823_c0_g1_i1,blat.proc3825158.chain_404	3	STRG.19311.2	1
scaffold_1	alt_donor	3165329	3165330	+	asmbl_1574	none	STRG.199.3	1	STRG.199.1,STRG.199.2,Trinity_GG_17441_c0_g1_i2,Trinity_GG_17441_c0_g1_i3,blat.proc3825164.chain_289,blat.proc3825164.chain_290	6
scaffold_9	alternate_exon	9618049	9618111	-	asmbl_55221	none	STRG.11331.2,blat.proc3825152.chain_3603	2	STRG.11331.1,blat.proc3825152.chain_3602	2
scaffold_22	alternate_exon	9716483	9717974	+	asmbl_30312	none	blat.proc3825176.chain_2375	1	STRG.25307.1,blat.proc3825176.chain_2352	2
scaffold_11	alt_acceptor	9051810	9051811	+	asmbl_5853	none	STRG.13934.2	1	STRG.13934.1,Trinity_GG_24942_c0_g1_i1,blat.proc3825170.chain_2400	3
scaffold_9	alt_acceptor	5567334	5567335	-	asmbl_55017	none	STRG.11128.2	1	STRG.11128.1	1
scaffold_23	ends_in_intron	10202070	10202070	-	asmbl_31135	none	Trinity_GG_14642_c0_g1_i7,blat.proc3825160.chain_3336	2	STRG.26231.1,STRG.26231.2,STRG.26231.3,blat.proc3825160.chain_3334,blat.proc3825160.chain_3339,blat.proc3825160.chain_3340	6
scaffold_21	alternate_exon	7935965	7937047	-	asmbl_27872	none	blat.proc3825160.chain_1469	1	Trinity_GG_13571_c0_g1_i1,blat.proc3825160.chain_1470	2
scaffold_16	starts_in_intron	289960	289960	+	asmbl_16021	none	blat.proc3825172.chain_3688	1	STRG.19019.1,STRG.19019.2,blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	4
scaffold_21	retained_intron	1151006	1151179	+	asmbl_28329	none	STRG.23790.1,blat.proc3825176.chain_1009	2	STRG.23790.3	1
scaffold_24	retained_intron	10605221	10605541	+	asmbl_32582	none	blat.proc3825178.chain_222	1	Trinity_GG_32236_c0_g1_i3,blat.proc3825178.chain_219	2
scaffold_6	starts_in_intron	12626949	12626949	-	asmbl_48837	none	Trinity_GG_4556_c0_g1_i6,blat.proc3825152.chain_415	2	STRG.8021.1,STRG.8021.2,Trinity_GG_4556_c0_g1_i2,blat.proc3825152.chain_411,blat.proc3825152.chain_412,blat.proc3825152.chain_413,blat.proc3825152.chain_414	7
scaffold_10	starts_in_intron	13781713	13781713	+	asmbl_3621	none	Trinity_GG_24448_c0_g1_i7,blat.proc3825170.chain_1555	2	STRG.12979.1,STRG.12979.2,STRG.12979.3	3
scaffold_16	starts_in_intron	14659332	14659332	-	asmbl_17488	none	Trinity_GG_11146_c0_g1_i1,blat.proc3825158.chain_909	2	STRG.19865.1,STRG.19865.2,blat.proc3825158.chain_907,blat.proc3825158.chain_908	4
scaffold_21	starts_in_intron	5545510	5545510	+	asmbl_28577,asmbl_28580	none	STRG.24088.2,blat.proc3825176.chain_1302,blat.proc3825176.chain_1303	3	STRG.24088.1,blat.proc3825176.chain_1304,blat.proc3825176.chain_1305	3
scaffold_5	alt_acceptor	13945922	13945923	-	asmbl_44583	none	STRG.6606.2	1	STRG.6606.1	1
scaffold_21	retained_intron	4967429	4967605	-	asmbl_27603	none	blat.proc3825160.chain_1180	1	STRG.24040.1,blat.proc3825160.chain_1179	2
scaffold_27	alt_donor	1550287	1550288	+	asmbl_36020,asmbl_36025	none	STRG.28642.1,STRG.28642.2,Trinity_GG_33147_c0_g1_i4,blat.proc3825178.chain_1740	4	Trinity_GG_33147_c0_g1_i5,blat.proc3825178.chain_1741	2
scaffold_14	alt_acceptor	12325791	12325792	-	asmbl_13566	none	STRG.17560.2	1	STRG.17560.1,blat.proc3825156.chain_2392,blat.proc3825156.chain_2393,blat.proc3825156.chain_2395	4
scaffold_18	alt_acceptor	7512003	7512004	-	asmbl_19950	none	STRG.21446.1,blat.proc3825158.chain_2282	2	STRG.21446.2	1
scaffold_15	alternate_exon	15857985	15859353	+	asmbl_15820	none	STRG.18973.3,Trinity_GG_27688_c0_g1_i12,blat.proc3825172.chain_3569	3	blat.proc3825172.chain_3572	1
scaffold_9	spliced_intron	16656048	16656688	-	asmbl_55603,asmbl_55604,asmbl_55605	none	STRG.11813.1,blat.proc3825154.chain_279,blat.proc3825154.chain_280,blat.proc3825154.chain_281	4	blat.proc3825154.chain_282	1
scaffold_1	alt_acceptor	9897775	9897776	-	asmbl_561	none	STRG.664.2,blat.proc3825148.chain_621	2	STRG.664.1,blat.proc3825148.chain_620	2
scaffold_28	starts_in_intron	5390459	5390459	+	asmbl_37584,asmbl_37587,asmbl_37588	none	STRG.29687.2,STRG.29687.3,STRG.29687.4	3	STRG.29687.1,Trinity_GG_33768_c0_g1_i2,Trinity_GG_33768_c0_g1_i3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866,blat.proc3825178.chain_2868,blat.proc3825178.chain_2869	7
scaffold_18	retained_intron	824551	824807	+	asmbl_20326,asmbl_20330	none	STRG.21008.2,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	3	blat.proc3825174.chain_1871	1
scaffold_18	alt_acceptor	1391630	1391631	-	asmbl_19617	none	STRG.21025.3	1	STRG.21025.1,STRG.21025.2,blat.proc3825158.chain_2005,blat.proc3825158.chain_2006	4
scaffold_13	alt_donor	5805511	5805512	+	asmbl_10902	none	blat.proc3825172.chain_706	1	blat.proc3825172.chain_711	1
scaffold_19	spliced_intron	11468745	11468906	-	asmbl_22393	none	STRG.22478.1,blat.proc3825158.chain_3232	2	blat.proc3825158.chain_3233	1
scaffold_1	starts_in_intron	6496129	6496129	-	asmbl_364	none	blat.proc3825148.chain_352	1	STRG.449.1,STRG.449.2,blat.proc3825148.chain_351,blat.proc3825148.chain_353	4
scaffold_16	ends_in_intron	8586500	8586500	+	asmbl_16415,asmbl_16417	none	STRG.19490.5,Trinity_GG_27967_c0_g1_i7,blat.proc3825174.chain_377	3	STRG.19490.1,STRG.19490.2,STRG.19490.3,STRG.19490.4,STRG.19490.6,STRG.19490.7,blat.proc3825174.chain_372,blat.proc3825174.chain_373,blat.proc3825174.chain_374,blat.proc3825174.chain_375,blat.proc3825174.chain_376	11
scaffold_2	spliced_intron	8064152	8064334	+	asmbl_24609	none	STRG.2102.1,blat.proc3825164.chain_2261	2	Trinity_GG_18492_c0_g1_i1,blat.proc3825164.chain_2260	2
scaffold_27	alternate_exon	1027884	1028132	-	asmbl_36739	none	STRG.28610.3,blat.proc3825162.chain_1755	2	STRG.28610.2,blat.proc3825162.chain_1756	2
scaffold_4	spliced_intron	19591656	19591710	-	asmbl_43460	none	blat.proc3825150.chain_1746	1	STRG.5548.1	1
scaffold_1	starts_in_intron	11426744	11426744	+	asmbl_2105	none	Trinity_GG_17781_c0_g1_i5,blat.proc3825164.chain_891	2	STRG.751.1,STRG.751.2,STRG.751.3,Trinity_GG_17781_c0_g1_i3,Trinity_GG_17781_c0_g1_i4,blat.proc3825164.chain_890,blat.proc3825164.chain_892,blat.proc3825164.chain_893,blat.proc3825164.chain_894	9
scaffold_13	starts_in_intron	11791562	11791562	-	asmbl_10104	none	blat.proc3825156.chain_1104	1	STRG.16320.1,blat.proc3825156.chain_1103,blat.proc3825156.chain_1105	3
scaffold_2	spliced_intron	7827162	7827319	-	asmbl_23283,asmbl_23285	none	STRG.2078.2,Trinity_GG_1152_c0_g1_i5,blat.proc3825148.chain_2093	3	STRG.2078.3,Trinity_GG_1152_c0_g1_i4,blat.proc3825148.chain_2096	3
scaffold_14	alt_acceptor	1069871	1069872	+	asmbl_11788,asmbl_11793,asmbl_11794,asmbl_11797	none	STRG.16766.3,STRG.16766.4,STRG.16766.5,blat.proc3825172.chain_1536,blat.proc3825172.chain_1539	5	STRG.16766.1,STRG.16766.2,blat.proc3825172.chain_1535,blat.proc3825172.chain_1537	4
scaffold_24	alt_donor	10267071	10267072	-	asmbl_33170	none	STRG.26978.2	1	STRG.26978.1,blat.proc3825162.chain_330	2
scaffold_23	ends_in_intron	4449556	4449556	-	asmbl_30868	none	Trinity_GG_14447_c0_g1_i4,blat.proc3825160.chain_3003	2	STRG.25862.1,STRG.25862.2,STRG.25862.3,STRG.25862.4,STRG.25862.5,Trinity_GG_14447_c0_g1_i1,Trinity_GG_14447_c0_g1_i2,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3002,blat.proc3825160.chain_3004,blat.proc3825160.chain_3005	11
scaffold_10	alternate_exon	2787348	2790056	-	asmbl_4131,asmbl_4134	none	STRG.12105.1,Trinity_GG_6692_c0_g1_i1,Trinity_GG_6692_c0_g1_i6,blat.proc3825154.chain_582,blat.proc3825154.chain_583,blat.proc3825154.chain_585,blat.proc3825154.chain_586	7	STRG.12105.2,Trinity_GG_6692_c0_g1_i2,blat.proc3825154.chain_584	3
scaffold_22	retained_exon	9718551	9718655	+	asmbl_30315	none	STRG.25308.4	1	STRG.25308.3	1
scaffold_25	retained_intron	4458047	4458215	+	asmbl_33505	none	Trinity_GG_32391_c2_g1_i2,blat.proc3825178.chain_455	2	STRG.27378.1,blat.proc3825178.chain_456	2
scaffold_9	starts_in_intron	12223133	12223133	-	asmbl_55362	none	STRG.11546.1,blat.proc3825154.chain_12	2	blat.proc3825154.chain_11	1
scaffold_10	starts_in_intron	395367	395367	+	asmbl_2853	none	Trinity_GG_23950_c1_g1_i4,blat.proc3825170.chain_689	2	STRG.11927.1,STRG.11927.2,Trinity_GG_23950_c1_g1_i1,Trinity_GG_23950_c1_g1_i3,blat.proc3825170.chain_688,blat.proc3825170.chain_690	6
scaffold_20	retained_intron	1490437	1490472	+	asmbl_26415,asmbl_26416,asmbl_26418	none	STRG.22869.2,STRG.22869.3,STRG.22869.4,Trinity_GG_29893_c1_g1_i3,Trinity_GG_29893_c1_g1_i4,blat.proc3825176.chain_24,blat.proc3825176.chain_25,blat.proc3825176.chain_26	8	STRG.22869.1,STRG.22869.6	2
scaffold_14	spliced_intron	3159934	3160251	+	asmbl_11921	none	blat.proc3825172.chain_1609	1	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	4
scaffold_17	retained_intron	9868140	9868228	-	asmbl_18215,asmbl_18217	none	STRG.20601.2,blat.proc3825158.chain_1631	2	STRG.20601.1,STRG.20601.3,blat.proc3825158.chain_1630	3
scaffold_8	alternate_exon	16083789	16083895	-	asmbl_52359	none	STRG.10591.1,blat.proc3825152.chain_2763	2	STRG.10591.2,STRG.10591.3,blat.proc3825152.chain_2764	3
scaffold_7	retained_intron	2509920	2510092	-	asmbl_50759	none	Trinity_GG_4956_c0_g1_i1,blat.proc3825152.chain_1163	2	STRG.8686.1,Trinity_GG_4956_c0_g1_i2,blat.proc3825152.chain_1161	3
scaffold_8	alternate_exon	9819913	9825552	+	asmbl_53111	none	STRG.10229.2,Trinity_GG_23004_c0_g1_i1,blat.proc3825168.chain_2785,blat.proc3825168.chain_2796	4	STRG.10229.1,blat.proc3825168.chain_2784	2
scaffold_4	alt_donor	4497587	4497588	-	asmbl_42518	none	blat.proc3825150.chain_591	1	STRG.4351.1,blat.proc3825150.chain_590	2
scaffold_8	spliced_intron	12027883	12028191	+	asmbl_53302	none	STRG.10402.1,Trinity_GG_23119_c0_g1_i2,blat.proc3825168.chain_2995	3	STRG.10402.2,blat.proc3825168.chain_2996	2
scaffold_6	alternate_exon	8546709	8547325	+	asmbl_47145	none	STRG.7732.1,Trinity_GG_21552_c0_g1_i1,blat.proc3825168.chain_165	3	STRG.7732.2,Trinity_GG_21552_c0_g1_i2,blat.proc3825168.chain_164	3
scaffold_19	skipped_exon	3557450	3558114	+	asmbl_21329	none	STRG.22045.4	1	STRG.22045.1,STRG.22045.2,STRG.22045.3	3
scaffold_15	alt_acceptor	375422	375423	+	asmbl_14963	none	STRG.17890.1,blat.proc3825172.chain_2634	2	STRG.17890.2	1
scaffold_3	ends_in_intron	5775314	5775314	-	asmbl_38863,asmbl_38864	none	Trinity_GG_1733_c0_g1_i7,blat.proc3825148.chain_3038,blat.proc3825148.chain_3040,blat.proc3825148.chain_3042	4	STRG.3244.1,STRG.3244.3,blat.proc3825148.chain_3041	3
scaffold_5	retained_intron	17301487	17301540	+	asmbl_46158,asmbl_46159	none	STRG.6909.1,STRG.6909.2,Trinity_GG_21093_c1_g1_i2	3	STRG.6909.3	1
scaffold_5	alt_acceptor	16939454	16939455	-	asmbl_44786	none	blat.proc3825150.chain_2993	1	STRG.6874.1,blat.proc3825150.chain_2994,blat.proc3825150.chain_2995	3
scaffold_21	alt_donor	8278548	8278549	+	asmbl_28805	none	STRG.24368.2	1	STRG.24368.1,STRG.24368.3	2
scaffold_4	alt_acceptor	13076427	13076428	+	asmbl_41775,asmbl_41776,asmbl_41778,asmbl_41780,asmbl_41781	none	STRG.4947.1,STRG.4947.2,STRG.4947.3,STRG.4947.4,blat.proc3825166.chain_1379,blat.proc3825166.chain_1381,blat.proc3825166.chain_1382	7	STRG.4947.5,blat.proc3825166.chain_1380	2
scaffold_17	retained_intron	11508780	11509171	+	asmbl_19230	none	Trinity_GG_28665_c1_g1_i1,blat.proc3825174.chain_1586	2	STRG.20699.1,blat.proc3825174.chain_1585	2
scaffold_23	skipped_exon	2207435	2208939	-	asmbl_30716,asmbl_30717	none	STRG.25698.3,STRG.25698.6	2	STRG.25698.1,STRG.25698.2,STRG.25698.5	3
scaffold_13	skipped_exon	6431276	6433917	-	asmbl_9790,asmbl_9791,asmbl_9792,asmbl_9793,asmbl_9794	none	STRG.15943.1,blat.proc3825156.chain_845,blat.proc3825156.chain_846,blat.proc3825156.chain_847,blat.proc3825156.chain_850	5	STRG.15943.2	1
scaffold_2	skipped_exon	15686520	15687128	+	asmbl_25070	none	STRG.2522.3,Trinity_GG_18746_c0_g1_i4	2	STRG.2522.1,STRG.2522.2,Trinity_GG_18746_c0_g1_i2,Trinity_GG_18746_c0_g1_i5,blat.proc3825164.chain_2814,blat.proc3825164.chain_2816	6
scaffold_6	alt_acceptor	2479060	2479061	-	asmbl_48130	none	STRG.7245.2	1	STRG.7245.1,STRG.7245.3,STRG.7245.4,blat.proc3825150.chain_3360,blat.proc3825150.chain_3361	5
scaffold_3	retained_intron	16006545	16006633	-	asmbl_39470	none	blat.proc3825148.chain_3716	1	STRG.3875.1,blat.proc3825148.chain_3717	2
scaffold_16	retained_intron	327833	327983	-	asmbl_16856,asmbl_16857,asmbl_16859,asmbl_16861	none	STRG.19029.2,blat.proc3825158.chain_167,blat.proc3825158.chain_168,blat.proc3825158.chain_170	4	STRG.19029.1,blat.proc3825158.chain_169,blat.proc3825158.chain_171,blat.proc3825158.chain_172	4
scaffold_7	spliced_intron	16829914	16830413	-	asmbl_51420	none	STRG.9594.1,blat.proc3825152.chain_1908	2	Trinity_GG_5367_c0_g1_i2,blat.proc3825152.chain_1909	2
scaffold_6	skipped_exon	8586032	8587723	+	asmbl_47163	none	STRG.7739.2	1	STRG.7739.1,Trinity_GG_21555_c0_g1_i9,blat.proc3825168.chain_170,blat.proc3825168.chain_173	4
scaffold_5	spliced_intron	4866969	4867162	+	asmbl_45307,asmbl_45308,asmbl_45310	none	STRG.5946.1,STRG.5946.2,STRG.5946.3,blat.proc3825166.chain_2170,blat.proc3825166.chain_2171,blat.proc3825166.chain_2172	6	Trinity_GG_20566_c0_g1_i1,blat.proc3825166.chain_2173	2
scaffold_16	skipped_exon	4721461	4721792	+	asmbl_16200	none	STRG.19254.3	1	STRG.19254.1,STRG.19254.2,blat.proc3825174.chain_49,blat.proc3825174.chain_50	4
scaffold_18	retained_intron	835426	835527	-	asmbl_19602	none	blat.proc3825158.chain_1976	1	STRG.21007.3,blat.proc3825158.chain_1974,blat.proc3825158.chain_1977	3
scaffold_9	alt_donor	6842731	6842732	+	asmbl_54105	none	STRG.11195.2,blat.proc3825168.chain_3741	2	STRG.11195.1,blat.proc3825168.chain_3742	2
scaffold_2	spliced_intron	16288921	16289287	+	asmbl_25108,asmbl_25109,asmbl_25114	none	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2851	3	blat.proc3825164.chain_2850,blat.proc3825164.chain_2852,blat.proc3825164.chain_2853	3
scaffold_1	alt_donor	13433579	13433580	-	asmbl_803	none	STRG.960.1,blat.proc3825148.chain_926	2	blat.proc3825148.chain_924	1
scaffold_10	retained_intron	5687438	5687977	+	asmbl_3191,asmbl_3193	none	STRG.12396.1,STRG.12396.3,blat.proc3825170.chain_1001	3	STRG.12396.2	1
scaffold_16	alt_donor	11297097	11297098	+	asmbl_16571	none	STRG.19661.3	1	STRG.19661.1,STRG.19661.2,blat.proc3825174.chain_590	3
scaffold_5	alt_acceptor	10298207	10298208	-	asmbl_44342	none	STRG.6332.2	1	STRG.6332.1,blat.proc3825150.chain_2557,blat.proc3825150.chain_2558	3
scaffold_12	ends_in_intron	1986673	1986673	-	asmbl_8316,asmbl_8317	none	blat.proc3825154.chain_2980,blat.proc3825154.chain_2981	2	STRG.14488.1,blat.proc3825154.chain_2979,blat.proc3825154.chain_2982	3
scaffold_13	retained_intron	15244277	15244789	-	asmbl_10234	none	blat.proc3825156.chain_1345	1	STRG.16569.1,blat.proc3825156.chain_1346,blat.proc3825156.chain_1397	3
scaffold_18	alt_donor	3605856	3605857	+	asmbl_20462	none	STRG.21178.3	1	STRG.21178.1,STRG.21178.2,blat.proc3825174.chain_2119	3
scaffold_9	alternate_exon	5659030	5659061	+	asmbl_54060	none	STRG.11133.2	1	STRG.11133.1,blat.proc3825168.chain_3679	2
scaffold_16	ends_in_intron	14438509	14438509	+	asmbl_16675,asmbl_16676	none	STRG.19815.1,STRG.19815.2	2	blat.proc3825174.chain_718	1
scaffold_3	spliced_intron	19821324	19822204	-	asmbl_39661	none	STRG.4096.3,Trinity_GG_2255_c0_g1_i2,blat.proc3825150.chain_268	3	STRG.4096.1,STRG.4096.2,Trinity_GG_2255_c0_g1_i1,Trinity_GG_2255_c0_g1_i3,blat.proc3825150.chain_269,blat.proc3825150.chain_270	6
scaffold_13	starts_in_intron	740295	740295	+	asmbl_10515	none	Trinity_GG_25811_c0_g1_i2,blat.proc3825172.chain_190	2	STRG.15461.1,STRG.15461.2,STRG.15461.3,blat.proc3825172.chain_191,blat.proc3825172.chain_193	5
scaffold_22	alt_donor	10637546	10637547	-	asmbl_29611	none	STRG.25407.2,blat.proc3825160.chain_2563	2	STRG.25407.1,blat.proc3825160.chain_2562	2
scaffold_14	alt_donor	15565823	15565824	+	asmbl_12619,asmbl_12625	none	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	3	blat.proc3825172.chain_2534	1
scaffold_11	alt_donor	6590706	6590707	-	asmbl_6724	none	STRG.13705.1,blat.proc3825154.chain_2268	2	STRG.13705.2,blat.proc3825154.chain_2269	2
scaffold_11	alternate_exon	15830140	15833670	+	asmbl_6134	none	STRG.14321.1,blat.proc3825170.chain_2800	2	STRG.14321.3	1
scaffold_23	alternate_exon	10204072	10204330	-	asmbl_31132,asmbl_31135,asmbl_31138	none	Trinity_GG_14642_c0_g1_i7,blat.proc3825160.chain_3334,blat.proc3825160.chain_3336,blat.proc3825160.chain_3339	4	STRG.26231.3	1
scaffold_15	skipped_exon	8073277	8075917	-	asmbl_14332	none	STRG.18383.1,blat.proc3825156.chain_3219	2	STRG.18383.2,blat.proc3825156.chain_3218	2
scaffold_3	starts_in_intron	934262	934262	+	asmbl_39816	none	blat.proc3825164.chain_3181	1	STRG.2915.1	1
scaffold_13	retained_intron	517905	520155	+	asmbl_10487	none	STRG.15449.1,blat.proc3825172.chain_188	2	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3
scaffold_24	spliced_intron	3335564	3335692	+	asmbl_32139	none	STRG.26531.1,blat.proc3825176.chain_3411	2	blat.proc3825176.chain_3412	1
scaffold_19	ends_in_intron	6676710	6676710	-	asmbl_22221	none	Trinity_GG_12318_c2_g1_i1,blat.proc3825158.chain_2919	2	STRG.22184.1,STRG.22184.2,blat.proc3825158.chain_2916	3
scaffold_2	alt_donor	3708145	3708146	+	asmbl_24305	none	STRG.1800.1	1	STRG.1800.3	1
scaffold_17	retained_exon	1302874	1302916	-	asmbl_17694	none	STRG.19975.1,blat.proc3825158.chain_1032	2	STRG.19975.2,blat.proc3825158.chain_1034	2
scaffold_23	spliced_intron	6778984	6779031	+	asmbl_31654	none	STRG.26009.1	1	Trinity_GG_31644_c0_g1_i1	1
scaffold_1	alt_donor	14320893	14320894	+	asmbl_2380	none	STRG.1027.2,blat.proc3825164.chain_1224	2	STRG.1027.1,blat.proc3825164.chain_1222,blat.proc3825164.chain_1223	3
scaffold_3	alt_donor	15838025	15838026	+	asmbl_40584	none	STRG.3861.2	1	STRG.3861.1,blat.proc3825166.chain_367	2
scaffold_5	ends_in_intron	1097121	1097121	-	asmbl_43822	none	STRG.5661.3	1	blat.proc3825150.chain_1910	1
scaffold_4	starts_in_intron	17901690	17901690	-	asmbl_43323	none	blat.proc3825150.chain_1568	1	STRG.5381.1	1
scaffold_18	retained_exon	3915822	3916635	-	asmbl_19784	none	STRG.21203.2	1	blat.proc3825158.chain_2160	1
scaffold_19	ends_in_intron	12451866	12451866	-	asmbl_22494	none	Trinity_GG_12557_c1_g1_i1,blat.proc3825158.chain_3341	2	STRG.22587.1,STRG.22587.2	2
scaffold_127	alt_donor	5661	5662	+	asmbl_9280	none	STRG.30165.1	1	blat.proc3825162.chain_3324	1
scaffold_5	skipped_exon	15627804	15629419	-	asmbl_44711	none	STRG.6755.1	1	STRG.6755.2	1
scaffold_2	alternate_exon	5112209	5112712	-	asmbl_23130	none	Trinity_GG_1050_c1_g1_i1,blat.proc3825148.chain_1865	2	STRG.1926.1,Trinity_GG_1050_c1_g1_i2,blat.proc3825148.chain_1864	3
scaffold_8	retained_exon	8739602	8739721	+	asmbl_53031	none	Trinity_GG_22945_c0_g1_i1,blat.proc3825168.chain_2689	2	Trinity_GG_22945_c0_g1_i2,blat.proc3825168.chain_2690	2
scaffold_11	skipped_exon	17293563	17294318	-	asmbl_7262	none	STRG.14391.1,blat.proc3825154.chain_2909	2	STRG.14391.2,blat.proc3825154.chain_2908	2
scaffold_19	spliced_intron	12821262	12821857	-	asmbl_22545,asmbl_22548,asmbl_22549	none	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3412,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	5	blat.proc3825158.chain_3409,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3413	4
scaffold_28	alternate_exon	5230824	5230887	-	asmbl_38261	none	Trinity_GG_16632_c0_g1_i9,blat.proc3825162.chain_2849	2	STRG.29674.1,blat.proc3825162.chain_2843,blat.proc3825162.chain_2846	3
scaffold_12	alt_donor	10611667	10611668	+	asmbl_7953	none	STRG.15044.2	1	STRG.15044.3,Trinity_GG_25597_c0_g1_i2,blat.proc3825170.chain_3549	3
scaffold_13	alt_acceptor	9990675	9990676	+	asmbl_11224	none	STRG.16239.1	1	STRG.16239.2,blat.proc3825172.chain_968	2
scaffold_4	spliced_intron	16479929	16480208	-	asmbl_43176,asmbl_43177,asmbl_43178,asmbl_43180	none	STRG.5225.1,STRG.5225.2,STRG.5225.3,blat.proc3825150.chain_1403,blat.proc3825150.chain_1404,blat.proc3825150.chain_1405,blat.proc3825150.chain_1406	7	Trinity_GG_2926_c2_g1_i1,blat.proc3825150.chain_1409	2
scaffold_11	retained_intron	3901228	3901407	+	asmbl_5469	none	STRG.13510.1	1	STRG.13510.2	1
scaffold_2	spliced_intron	7323594	7324003	+	asmbl_24564	none	STRG.2062.2	1	STRG.2062.1,Trinity_GG_18498_c0_g1_i3,blat.proc3825164.chain_2281	3
scaffold_500	spliced_intron	2115	2216	+	asmbl_46488,asmbl_46496	none	STRG.30357.1,blat.proc3825178.chain_3440,blat.proc3825178.chain_3446	3	STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445	6
scaffold_1	alt_donor	16498293	16498294	-	asmbl_999	none	STRG.1155.1,blat.proc3825148.chain_1093	2	STRG.1155.2,blat.proc3825148.chain_1094	2
scaffold_26	alt_donor	4457109	4457110	+	asmbl_34907	none	STRG.28164.3	1	STRG.28164.1,STRG.28164.2,blat.proc3825178.chain_1244,blat.proc3825178.chain_1245	4
scaffold_23	retained_intron	5339139	5339871	-	asmbl_30907,asmbl_30910,asmbl_30911,asmbl_30912	none	STRG.25911.2,Trinity_GG_14511_c0_g1_i7,blat.proc3825160.chain_3097,blat.proc3825160.chain_3098,blat.proc3825160.chain_3102	5	STRG.25911.3,blat.proc3825160.chain_3099	2
scaffold_10	retained_intron	785465	785549	+	asmbl_2866,asmbl_2869	none	STRG.11971.7,Trinity_GG_23932_c1_g1_i5,blat.proc3825170.chain_657,blat.proc3825170.chain_658	4	STRG.11971.8	1
scaffold_23	retained_intron	6289367	6289481	-	asmbl_30970,asmbl_30973,asmbl_30974	none	STRG.25975.3,Trinity_GG_14564_c0_g1_i2,blat.proc3825160.chain_3190,blat.proc3825160.chain_3192	4	STRG.25975.1,STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i6,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3188,blat.proc3825160.chain_3189,blat.proc3825160.chain_3191,blat.proc3825160.chain_3193	12
scaffold_4	alternate_exon	9966757	9966982	-	asmbl_42829	none	STRG.4759.1,Trinity_GG_2665_c1_g1_i1,blat.proc3825150.chain_973	3	STRG.4759.2,blat.proc3825150.chain_971,blat.proc3825150.chain_972	3
scaffold_4	alt_donor	12789031	12789032	+	asmbl_41750,asmbl_41754	none	STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365	3	STRG.4935.1,blat.proc3825166.chain_1369	2
scaffold_14	alt_donor	7497731	7497732	+	asmbl_12166,asmbl_12167,asmbl_12170	none	STRG.17193.2,STRG.17193.3,STRG.17193.4,blat.proc3825172.chain_1878	4	STRG.17193.1	1
scaffold_9	alternate_exon	3692606	3692696	+	asmbl_53915	none	STRG.10978.1	1	STRG.10978.2	1
scaffold_17	ends_in_intron	1813422	1813422	+	asmbl_18631	none	STRG.20012.1,blat.proc3825174.chain_893	2	STRG.20012.2,blat.proc3825174.chain_894	2
scaffold_8	alt_acceptor	4079052	4079053	+	asmbl_52809,asmbl_52811,asmbl_52812	none	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2486	3	blat.proc3825168.chain_2485	1
scaffold_16	alt_acceptor	2173786	2173787	+	asmbl_16112	none	STRG.19116.2,blat.proc3825172.chain_3725	2	blat.proc3825172.chain_3727	1
scaffold_11	skipped_exon	7047689	7049335	+	asmbl_5646,asmbl_5651	none	STRG.13733.2,STRG.13733.3	2	STRG.13733.1,STRG.13733.4,Trinity_GG_24878_c0_g1_i2,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i6,blat.proc3825170.chain_2271,blat.proc3825170.chain_2272,blat.proc3825170.chain_2273	8
scaffold_2	alt_acceptor	923015	923016	+	asmbl_24153,asmbl_24154,asmbl_24155,asmbl_24156,asmbl_24157,asmbl_24158	none	STRG.1570.1,STRG.1570.3,STRG.1570.5,STRG.1570.6,blat.proc3825164.chain_1625,blat.proc3825164.chain_1629,blat.proc3825164.chain_1630,blat.proc3825164.chain_1631,blat.proc3825164.chain_1632	9	STRG.1570.4	1
scaffold_21	alt_acceptor	256225	256226	-	asmbl_27282,asmbl_27286,asmbl_27289	none	STRG.23725.4,STRG.23725.5,blat.proc3825160.chain_811,blat.proc3825160.chain_812	4	blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	3
scaffold_21	alt_donor	5965984	5965985	+	asmbl_28596	none	STRG.24128.2,blat.proc3825176.chain_1266	2	STRG.24128.1,blat.proc3825176.chain_1265	2
scaffold_24	starts_in_intron	5384738	5384738	+	asmbl_32214	none	Trinity_GG_31990_c0_g1_i3,blat.proc3825176.chain_3502	2	STRG.26629.1,STRG.26629.2,blat.proc3825176.chain_3503,blat.proc3825176.chain_3504	4
scaffold_21	alt_acceptor	8570418	8570419	+	asmbl_28827	none	STRG.24382.2	1	STRG.24382.1,Trinity_GG_30811_c0_g1_i1,blat.proc3825176.chain_1574	3
scaffold_4	alternate_exon	4411158	4414070	+	asmbl_41255	none	STRG.4349.1,blat.proc3825166.chain_851	2	Trinity_GG_19749_c0_g1_i21,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_845,blat.proc3825166.chain_850,blat.proc3825166.chain_852	5
scaffold_15	spliced_intron	2603367	2603410	+	asmbl_15071,asmbl_15072	none	STRG.18041.2,STRG.18041.3	2	STRG.18041.1,Trinity_GG_27216_c0_g1_i1,blat.proc3825172.chain_2731	3
scaffold_10	starts_in_intron	1445642	1445642	-	asmbl_4055	none	Trinity_GG_6685_c0_g1_i2,blat.proc3825154.chain_570	2	STRG.12017.1,Trinity_GG_6685_c0_g1_i4,blat.proc3825154.chain_568	3
scaffold_2	alt_donor	14434190	14434191	+	asmbl_24933	none	STRG.2450.1	1	STRG.2450.2,blat.proc3825164.chain_2699	2
scaffold_8	spliced_intron	12728267	12728451	-	asmbl_52223,asmbl_52225	none	STRG.10451.1,STRG.10451.2,blat.proc3825152.chain_2672	3	blat.proc3825152.chain_2671	1
scaffold_506	alt_donor	2659	2660	+	asmbl_46501,asmbl_46504	none	STRG.30354.1,blat.proc3825178.chain_3453,blat.proc3825178.chain_3454	3	STRG.30354.2,blat.proc3825178.chain_3451	2
scaffold_12	alt_donor	3633542	3633543	+	asmbl_7563	none	STRG.14577.1,blat.proc3825170.chain_3116	2	STRG.14577.2	1
scaffold_28	alt_donor	833094	833095	-	asmbl_37944	none	STRG.29296.1,blat.proc3825162.chain_2380	2	STRG.29296.2	1
scaffold_22	starts_in_intron	7019759	7019759	-	asmbl_29373	none	blat.proc3825160.chain_2188	1	STRG.25037.1,blat.proc3825160.chain_2189	2
scaffold_14	starts_in_intron	7585046	7585046	-	asmbl_13230	none	Trinity_GG_9650_c0_g1_i1,blat.proc3825156.chain_2020	2	STRG.17210.2	1
scaffold_14	alt_donor	1094343	1094344	+	asmbl_11802	none	STRG.16769.1,blat.proc3825172.chain_1478	2	STRG.16769.2,blat.proc3825172.chain_1480	2
scaffold_4	starts_in_intron	16133716	16133716	-	asmbl_43139	none	STRG.5184.1	1	STRG.5184.2,STRG.5184.3,blat.proc3825150.chain_1340,blat.proc3825150.chain_1342	4
scaffold_6	spliced_intron	13983939	13984518	-	asmbl_48969,asmbl_48970,asmbl_48974	none	STRG.8159.1,blat.proc3825152.chain_612,blat.proc3825152.chain_614,blat.proc3825152.chain_615	4	Trinity_GG_4653_c0_g2_i6,blat.proc3825152.chain_617	2
scaffold_25	starts_in_intron	1903741	1903741	-	asmbl_34054	none	STRG.27201.1	1	STRG.27201.3,STRG.27201.4	2
scaffold_13	spliced_intron	6950776	6951096	-	asmbl_9821	none	STRG.15984.4	1	STRG.15984.1,Trinity_GG_8951_c0_g1_i5	2
scaffold_732	retained_intron	766	906	+	asmbl_51634	none	Trinity_GG_34148_c0_g1_i5	1	STRG.30447.1,blat.proc3825178.chain_3506,blat.proc3825178.chain_3507,blat.proc3825178.chain_3508	4
scaffold_18	spliced_intron	372033	372122	-	asmbl_19575,asmbl_19583,asmbl_19584	none	STRG.20990.1,blat.proc3825158.chain_1986,blat.proc3825158.chain_1989,blat.proc3825158.chain_1990	4	blat.proc3825158.chain_1985	1
scaffold_4	ends_in_intron	14115278	14115278	-	asmbl_43032	none	Trinity_GG_2786_c0_g2_i1,blat.proc3825150.chain_1186	2	STRG.5032.1,STRG.5032.2,blat.proc3825150.chain_1185	3
scaffold_26	spliced_intron	4440010	4440139	+	asmbl_34901	none	blat.proc3825178.chain_1235	1	STRG.28147.1,STRG.28147.2,blat.proc3825178.chain_1233	3
scaffold_12	alt_donor	6423310	6423311	-	asmbl_8533,asmbl_8534	none	STRG.14754.1,STRG.14754.2,blat.proc3825154.chain_3270,blat.proc3825154.chain_3271	4	STRG.14754.3,blat.proc3825154.chain_3272	2
scaffold_6	retained_intron	8475432	8475513	-	asmbl_48561	none	STRG.7720.2	1	STRG.7720.1,blat.proc3825152.chain_30	2
scaffold_25	alt_acceptor	2979615	2979616	-	asmbl_34081	none	STRG.27241.1,blat.proc3825162.chain_612	2	STRG.27241.2	1
scaffold_22	starts_in_intron	6964813	6964813	-	asmbl_29360	none	Trinity_GG_13970_c0_g1_i2	1	STRG.25017.1	1
scaffold_5	ends_in_intron	14709227	14709227	+	asmbl_45962	none	STRG.6674.2,Trinity_GG_20947_c0_g1_i3,blat.proc3825166.chain_2845	3	STRG.6674.1,blat.proc3825166.chain_2844	2
scaffold_2	retained_intron	6766622	6768034	+	asmbl_24491,asmbl_24492,asmbl_24495	none	Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i6,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152,blat.proc3825164.chain_2153	6	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150	5
scaffold_2	spliced_intron	4838417	4838709	-	asmbl_23102,asmbl_23103	none	STRG.1905.1,blat.proc3825148.chain_1922	2	blat.proc3825148.chain_1918	1
scaffold_25	alternate_exon	9940568	9940807	-	asmbl_34529	none	blat.proc3825162.chain_1157	1	STRG.27806.2	1
scaffold_12	alternate_exon	12836654	12838118	-	asmbl_8893,asmbl_8894	none	STRG.15179.1,STRG.15179.2,blat.proc3825154.chain_3691,blat.proc3825154.chain_3692	4	STRG.15179.3	1
scaffold_5	alt_donor	6664514	6664515	-	asmbl_44129	none	STRG.6073.1	1	STRG.6073.2,STRG.6073.3	2
scaffold_17	retained_intron	538675	539181	+	asmbl_18544,asmbl_18547	none	STRG.19902.3,blat.proc3825174.chain_784,blat.proc3825174.chain_786	3	STRG.19902.1,blat.proc3825174.chain_788,blat.proc3825174.chain_789	3
scaffold_19	retained_intron	13102708	13103005	-	asmbl_22596	none	STRG.22632.1,blat.proc3825158.chain_3468	2	STRG.22632.2,Trinity_GG_12604_c0_g1_i2,blat.proc3825158.chain_3467	3
scaffold_7	alt_acceptor	1236295	1236296	+	asmbl_49606	none	STRG.8637.5	1	STRG.8637.6,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072,blat.proc3825168.chain_1074,blat.proc3825168.chain_1079	8
scaffold_25	alternate_exon	9939830	9947300	-	asmbl_34530	none	STRG.27806.2	1	blat.proc3825162.chain_1157	1
scaffold_8	starts_in_intron	18531284	18531284	+	asmbl_53560	none	Trinity_GG_23266_c1_g1_i1,blat.proc3825168.chain_3263	2	STRG.10750.2	1
scaffold_21	retained_exon	5774120	5774263	-	asmbl_27697	none	STRG.24114.3	1	STRG.24114.1,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200	4
scaffold_20	alt_donor	11930346	11930347	+	asmbl_27105	none	STRG.23696.3,blat.proc3825176.chain_837	2	STRG.23696.1,blat.proc3825176.chain_836,blat.proc3825176.chain_838	3
scaffold_19	spliced_intron	12102324	12102615	-	asmbl_22452	none	STRG.22535.2,blat.proc3825158.chain_3218	2	STRG.22535.1,blat.proc3825158.chain_3219	2
scaffold_14	alternate_exon	15584987	15587053	+	asmbl_12633	none	STRG.17811.5,Trinity_GG_27113_c1_g1_i1,blat.proc3825172.chain_2558	3	STRG.17811.4	1
scaffold_15	spliced_intron	4493750	4493846	+	asmbl_15140,asmbl_15142,asmbl_15144,asmbl_15145,asmbl_15148	none	STRG.18177.1,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2857,blat.proc3825172.chain_2858	7	STRG.18177.2,blat.proc3825172.chain_2856	2
scaffold_13	retained_exon	1378408	1378452	-	asmbl_9405,asmbl_9407	none	blat.proc3825156.chain_340,blat.proc3825156.chain_343	2	STRG.15508.1,STRG.15508.2,blat.proc3825156.chain_341,blat.proc3825156.chain_342	4
scaffold_22	retained_exon	6217741	6217849	-	asmbl_29325,asmbl_29326	none	STRG.24984.1,STRG.24984.4	2	STRG.24984.3	1
scaffold_17	skipped_exon	9529492	9531393	+	asmbl_19103,asmbl_19106,asmbl_19107,asmbl_19108,asmbl_19109	none	STRG.20578.2,Trinity_GG_28562_c0_g1_i2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1395,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	9	STRG.20578.1,Trinity_GG_28562_c0_g1_i8,blat.proc3825174.chain_1400	3
scaffold_23	alternate_exon	2992244	2992335	-	asmbl_30772	none	STRG.25748.3	1	STRG.25748.1,blat.proc3825160.chain_2952,blat.proc3825160.chain_2955	3
scaffold_9	alt_acceptor	8094272	8094273	-	asmbl_55121	none	STRG.11242.1,blat.proc3825152.chain_3466	2	STRG.11242.2	1
scaffold_20	alternate_exon	10101799	10101846	+	asmbl_26927	none	STRG.23555.2,blat.proc3825176.chain_717	2	STRG.23555.3,blat.proc3825176.chain_716	2
scaffold_22	skipped_exon	10681710	10682751	-	asmbl_29617	none	blat.proc3825160.chain_2610	1	STRG.25415.1,STRG.25415.2,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608	4
scaffold_5	retained_intron	1504160	1504271	-	asmbl_43853	none	STRG.5708.2	1	STRG.5708.1,blat.proc3825150.chain_1861,blat.proc3825166.chain_1948	3
scaffold_19	starts_in_intron	11490341	11490341	+	asmbl_21699	none	Trinity_GG_29743_c0_g1_i2,blat.proc3825174.chain_3483	2	STRG.22487.1,Trinity_GG_29743_c0_g1_i4,blat.proc3825174.chain_3481	3
scaffold_24	skipped_exon	9119018	9119908	+	asmbl_32509,asmbl_32510,asmbl_32511,asmbl_32512,asmbl_32513,asmbl_32514,asmbl_32515	none	STRG.26942.1,blat.proc3825178.chain_173,blat.proc3825178.chain_175,blat.proc3825178.chain_176,blat.proc3825178.chain_177,blat.proc3825178.chain_178,blat.proc3825178.chain_179,blat.proc3825178.chain_180	8	Trinity_GG_32221_c0_g1_i8,blat.proc3825178.chain_170,blat.proc3825178.chain_172	3
scaffold_16	ends_in_intron	4879654	4879654	-	asmbl_17077	none	Trinity_GG_10828_c0_g1_i2,blat.proc3825158.chain_415	2	STRG.19264.1	1
scaffold_5	starts_in_intron	10652755	10652755	+	asmbl_45689	none	Trinity_GG_20776_c1_g1_i1,blat.proc3825166.chain_2563	2	STRG.6347.2	1
scaffold_19	alt_acceptor	12578014	12578015	-	asmbl_22518,asmbl_22519	none	STRG.22584.1,blat.proc3825158.chain_3373,blat.proc3825158.chain_3374	3	STRG.22584.2,STRG.22584.3	2
scaffold_13	spliced_intron	7217965	7219584	+	asmbl_11019,asmbl_11022,asmbl_11024,asmbl_11026	none	STRG.16019.1,blat.proc3825172.chain_810,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_815	5	blat.proc3825172.chain_814,blat.proc3825172.chain_816	2
scaffold_15	alt_acceptor	4967391	4967392	-	asmbl_14173	none	STRG.18209.2,Trinity_GG_10249_c0_g1_i9,blat.proc3825156.chain_3060	3	STRG.18209.5	1
scaffold_5	starts_in_intron	7120786	7120786	-	asmbl_44167	none	blat.proc3825150.chain_2280	1	STRG.6121.1,blat.proc3825150.chain_2281	2
scaffold_27	alt_donor	9105634	9105635	+	asmbl_36503	none	blat.proc3825178.chain_2361	1	STRG.29163.1,STRG.29163.2,blat.proc3825178.chain_2362,blat.proc3825178.chain_2363,blat.proc3825178.chain_2364,blat.proc3825178.chain_2365	6
scaffold_8	alt_acceptor	9870717	9870718	+	asmbl_53122	none	STRG.10233.6	1	STRG.10233.2,STRG.10233.5,blat.proc3825168.chain_2815,blat.proc3825168.chain_2816,blat.proc3825168.chain_2817,blat.proc3825168.chain_2818,blat.proc3825168.chain_2819,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	9
scaffold_23	retained_intron	4449754	4450584	-	asmbl_30868,asmbl_30869	none	STRG.25862.2,Trinity_GG_14447_c0_g1_i4,blat.proc3825160.chain_3003	3	STRG.25862.1,STRG.25862.5,Trinity_GG_14447_c0_g1_i2,blat.proc3825160.chain_3005	4
scaffold_8	spliced_intron	4186166	4186288	+	asmbl_52817,asmbl_52820	none	STRG.9897.1,blat.proc3825168.chain_2471,blat.proc3825168.chain_2473	3	blat.proc3825168.chain_2472	1
scaffold_2	ends_in_intron	32383	32383	+	asmbl_24060,asmbl_24062	none	blat.proc3825164.chain_1641,blat.proc3825164.chain_1644	2	STRG.1496.1,STRG.1496.3,blat.proc3825164.chain_1639,blat.proc3825164.chain_1645	4
scaffold_6	spliced_intron	12628524	12628614	-	asmbl_48835,asmbl_48836,asmbl_48838	none	STRG.8021.1,STRG.8021.2,Trinity_GG_4556_c0_g1_i2,blat.proc3825152.chain_411,blat.proc3825152.chain_412,blat.proc3825152.chain_413	6	blat.proc3825152.chain_414	1
scaffold_27	spliced_intron	3741581	3742122	-	asmbl_36919,asmbl_36920	none	STRG.28841.1,STRG.28841.2,blat.proc3825162.chain_2085,blat.proc3825162.chain_2088	4	STRG.28841.3,blat.proc3825162.chain_2086,blat.proc3825162.chain_2087	3
scaffold_13	alt_donor	7109506	7109507	+	asmbl_11011	none	STRG.16010.3,Trinity_GG_26113_c0_g1_i10,blat.proc3825172.chain_781	3	STRG.16010.2	1
scaffold_12	alternate_exon	7618666	7618701	-	asmbl_8604	none	blat.proc3825154.chain_3359	1	STRG.14840.1,STRG.14840.2,STRG.14840.3,STRG.14840.4,blat.proc3825154.chain_3358	5
scaffold_369	spliced_intron	1752	1811	+	asmbl_41051	none	STRG.30301.2	1	STRG.30301.1	1
scaffold_7	retained_intron	3955080	3955398	-	asmbl_50834	none	blat.proc3825152.chain_1229	1	STRG.8794.1,blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1228,blat.proc3825152.chain_1230	5
scaffold_17	alternate_exon	3999274	3999835	+	asmbl_18753,asmbl_18755,asmbl_18756,asmbl_18757,asmbl_18758,asmbl_18760	none	STRG.20160.1,STRG.20160.2,STRG.20160.4,blat.proc3825174.chain_1031,blat.proc3825174.chain_1033,blat.proc3825174.chain_1034,blat.proc3825174.chain_1035	7	STRG.20160.3,blat.proc3825174.chain_1032	2
scaffold_21	alt_donor	5604563	5604564	+	asmbl_28586	none	STRG.24094.2	1	STRG.24094.1,blat.proc3825176.chain_1299	2
scaffold_1	spliced_intron	8733024	8733104	-	asmbl_482,asmbl_483	none	STRG.576.1,blat.proc3825148.chain_569,blat.proc3825148.chain_570	3	blat.proc3825148.chain_571	1
scaffold_13	retained_intron	7507453	7507966	-	asmbl_9886	none	STRG.16047.3,blat.proc3825156.chain_903	2	STRG.16047.1,blat.proc3825156.chain_899,blat.proc3825156.chain_905	3
scaffold_1	retained_exon	4568662	4568844	-	asmbl_198,asmbl_200,asmbl_201	none	STRG.285.1,STRG.285.2,STRG.285.4,blat.proc3825148.chain_153,blat.proc3825148.chain_158,blat.proc3825148.chain_159	6	STRG.285.3	1
scaffold_28	alt_donor	294106	294107	+	asmbl_37269,asmbl_37270	none	STRG.29263.2,blat.proc3825178.chain_2488	2	STRG.29263.1,blat.proc3825178.chain_2490	2
scaffold_6	retained_intron	13871377	13871524	+	asmbl_47542	none	Trinity_GG_21790_c0_g1_i2,Trinity_GG_4651_c0_g1_i3,blat.proc3825152.chain_604,blat.proc3825168.chain_641	4	STRG.8133.2,blat.proc3825152.chain_603,blat.proc3825168.chain_640	3
scaffold_27	spliced_intron	3093328	3093432	-	asmbl_36893	none	STRG.28796.6	1	STRG.28796.2,STRG.28796.4,Trinity_GG_16154_c0_g1_i2,blat.proc3825162.chain_2063,blat.proc3825162.chain_2066,blat.proc3825162.chain_2068	6
scaffold_6	starts_in_intron	13228725	13228725	+	asmbl_47495,asmbl_47505	none	STRG.8084.8,Trinity_GG_21752_c0_g1_i9,blat.proc3825168.chain_574,blat.proc3825168.chain_578	4	STRG.8084.1,STRG.8084.2,STRG.8084.3,STRG.8084.4,STRG.8084.5,STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_573,blat.proc3825168.chain_575,blat.proc3825168.chain_576,blat.proc3825168.chain_577	13
scaffold_20	spliced_intron	10384754	10384960	+	asmbl_26960,asmbl_26962	none	STRG.23583.4,blat.proc3825176.chain_668	2	blat.proc3825176.chain_672	1
scaffold_8	retained_intron	12027883	12028191	+	asmbl_53303	none	STRG.10402.2,blat.proc3825168.chain_2996	2	STRG.10402.1,Trinity_GG_23119_c0_g1_i2,blat.proc3825168.chain_2995	3
scaffold_14	retained_exon	9272349	9272763	-	asmbl_13363	none	STRG.17338.4,blat.proc3825156.chain_2207	2	STRG.17338.5	1
scaffold_26	alt_donor	3789811	3789812	+	asmbl_34831	none	STRG.28067.2	1	STRG.28067.1,STRG.28067.3	2
scaffold_2	starts_in_intron	11475608	11475608	-	asmbl_23453,asmbl_23454	none	STRG.2267.1,STRG.2267.3,Trinity_GG_1239_c0_g1_i1,Trinity_GG_1239_c0_g1_i3,blat.proc3825148.chain_2244,blat.proc3825148.chain_2245	6	STRG.2267.2,Trinity_GG_1239_c0_g1_i2,blat.proc3825148.chain_2246	3
scaffold_7	alt_acceptor	8510078	8510079	+	asmbl_50001	none	STRG.9078.1,blat.proc3825168.chain_1604	2	blat.proc3825168.chain_1609	1
scaffold_2	alt_donor	5376202	5376203	-	asmbl_23145	none	STRG.1946.2,blat.proc3825148.chain_1907	2	STRG.1946.3,blat.proc3825148.chain_1904	2
scaffold_2	alt_acceptor	4787957	4787958	+	asmbl_24383	none	STRG.1899.2	1	STRG.1899.3,blat.proc3825164.chain_2022	2
scaffold_15	spliced_intron	4964484	4964665	+	asmbl_15184	none	STRG.18207.1	1	STRG.18207.4	1
scaffold_12	ends_in_intron	4609993	4609993	-	asmbl_8414,asmbl_8418,asmbl_8419,asmbl_8420	none	STRG.14639.4,Trinity_GG_8168_c0_g1_i1,blat.proc3825154.chain_3139,blat.proc3825154.chain_3140,blat.proc3825154.chain_3141	5	STRG.14639.1,STRG.14639.2,blat.proc3825154.chain_3136,blat.proc3825154.chain_3137,blat.proc3825154.chain_3138	5
scaffold_18	alternate_exon	4762379	4769669	+	asmbl_20553,asmbl_20555	none	STRG.21273.1,STRG.21273.4,Trinity_GG_29026_c0_g1_i1,Trinity_GG_29026_c1_g1_i4,blat.proc3825174.chain_2227,blat.proc3825174.chain_2228	6	Trinity_GG_29026_c1_g1_i2,blat.proc3825174.chain_2229	2
scaffold_22	alt_acceptor	10237275	10237276	-	asmbl_29586,asmbl_29587	none	STRG.25369.1,STRG.25369.3,blat.proc3825160.chain_2495,blat.proc3825160.chain_2496	4	STRG.25369.2	1
scaffold_2	retained_intron	13894429	13894871	+	asmbl_24861	none	Trinity_GG_18645_c0_g1_i1,blat.proc3825164.chain_2570	2	STRG.2380.1,Trinity_GG_18645_c0_g1_i2,blat.proc3825164.chain_2569	3
scaffold_25	retained_exon	5054333	5054386	+	asmbl_33557	none	STRG.27435.1,blat.proc3825178.chain_506	2	STRG.27435.2,blat.proc3825178.chain_507	2
scaffold_16	retained_intron	1510638	1511404	+	asmbl_16082	none	STRG.19099.1,blat.proc3825174.chain_10	2	STRG.19099.3	1
scaffold_13	ends_in_intron	5710686	5710686	-	asmbl_9710	none	STRG.15881.4	1	STRG.15881.1,STRG.15881.2,STRG.15881.3,blat.proc3825156.chain_726,blat.proc3825156.chain_730,blat.proc3825156.chain_731,blat.proc3825156.chain_732	7
scaffold_1	retained_intron	7290185	7290684	+	asmbl_1895,asmbl_1896	none	STRG.520.3,Trinity_GG_17630_c0_g1_i1,Trinity_GG_17630_c0_g1_i2,blat.proc3825164.chain_641,blat.proc3825164.chain_642	5	STRG.520.2	1
scaffold_16	retained_intron	433763	434014	-	asmbl_16869,asmbl_16870,asmbl_16873,asmbl_16877	none	blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_202,blat.proc3825158.chain_204	4	STRG.19041.2,blat.proc3825158.chain_200,blat.proc3825158.chain_201	3
scaffold_14	starts_in_intron	15470744	15470744	+	asmbl_12602	none	Trinity_GG_27042_c0_g1_i7,blat.proc3825172.chain_2421	2	STRG.17781.1,blat.proc3825172.chain_2424,blat.proc3825172.chain_2425	3
scaffold_20	starts_in_intron	2852155	2852155	-	asmbl_25681	none	Trinity_GG_12851_c2_g1_i1	1	STRG.23031.1	1
scaffold_17	alternate_exon	9490892	9491101	+	asmbl_19098	none	STRG.20571.1,Trinity_GG_28580_c0_g1_i2,blat.proc3825174.chain_1432	3	STRG.20571.2,Trinity_GG_28580_c0_g1_i1,blat.proc3825174.chain_1433	3
scaffold_22	alt_donor	6956981	6956982	-	asmbl_29352,asmbl_29354	none	STRG.25024.2,STRG.25024.3	2	STRG.25024.1	1
scaffold_11	spliced_intron	11943331	11943516	-	asmbl_7044,asmbl_7051,asmbl_7052	none	STRG.14177.4,STRG.14177.6,blat.proc3825154.chain_2596	3	Trinity_GG_7854_c2_g1_i1,blat.proc3825154.chain_2598	2
scaffold_17	ends_in_intron	8219435	8219435	+	asmbl_18949	none	Trinity_GG_28483_c0_g3_i1,blat.proc3825174.chain_1250	2	STRG.20449.1,blat.proc3825174.chain_1248	2
scaffold_13	spliced_intron	11601420	11601630	+	asmbl_11287,asmbl_11289,asmbl_11291,asmbl_11292,asmbl_11294,asmbl_11295,asmbl_11297	none	STRG.16316.1,STRG.16316.3,STRG.16316.7,blat.proc3825172.chain_1029,blat.proc3825172.chain_1032,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	7	blat.proc3825172.chain_1028,blat.proc3825172.chain_1030,blat.proc3825172.chain_1033,blat.proc3825172.chain_1034	4
scaffold_2	alt_acceptor	15507996	15507997	-	asmbl_23639,asmbl_23640	none	STRG.2513.1,blat.proc3825148.chain_2504	2	blat.proc3825148.chain_2501	1
scaffold_25	alt_acceptor	9540571	9540572	+	asmbl_33827	none	STRG.27767.1,Trinity_GG_32610_c0_g1_i1	2	STRG.27767.2	1
scaffold_25	starts_in_intron	4540233	4540233	+	asmbl_33512	none	Trinity_GG_32413_c0_g1_i2,blat.proc3825178.chain_492	2	STRG.27392.1,blat.proc3825178.chain_495	2
scaffold_10	alt_acceptor	14826327	14826328	+	asmbl_3666	none	STRG.13026.2,blat.proc3825170.chain_1575	2	STRG.13026.1,STRG.13026.3	2
scaffold_1	ends_in_intron	11394198	11394198	+	asmbl_2095	none	Trinity_GG_17787_c0_g1_i2,blat.proc3825164.chain_918	2	STRG.748.1,blat.proc3825164.chain_917,blat.proc3825164.chain_919	3
scaffold_2237	retained_intron	774	866	+	asmbl_30552	none	STRG.30731.1	1	STRG.30731.2	1
scaffold_17	alternate_exon	5424354	5424525	-	asmbl_17934	none	STRG.20260.1,blat.proc3825158.chain_1300	2	STRG.20260.2,blat.proc3825158.chain_1301	2
scaffold_20	retained_intron	9826506	9826707	-	asmbl_26058	none	blat.proc3825160.chain_614	1	STRG.23529.1,STRG.23529.2,blat.proc3825160.chain_613,blat.proc3825160.chain_615,blat.proc3825160.chain_616	5
scaffold_13	starts_in_intron	3569005	3569005	+	asmbl_10710,asmbl_10715	none	STRG.15671.3,Trinity_GG_25901_c0_g1_i4,blat.proc3825172.chain_381,blat.proc3825172.chain_383	4	STRG.15671.1,STRG.15671.2,blat.proc3825172.chain_380,blat.proc3825172.chain_382,blat.proc3825172.chain_384	5
scaffold_8	starts_in_intron	11954273	11954273	+	asmbl_53294	none	STRG.10399.2,blat.proc3825168.chain_2957	2	STRG.10399.1,blat.proc3825168.chain_2958	2
scaffold_13	retained_intron	4656102	4656354	+	asmbl_10820,asmbl_10822	none	STRG.15801.1,blat.proc3825172.chain_553	2	STRG.15801.2,STRG.15801.3,blat.proc3825172.chain_554	3
scaffold_11	alt_acceptor	15631598	15631599	+	asmbl_6118	none	blat.proc3825170.chain_2835	1	STRG.14299.1,STRG.14299.2,blat.proc3825170.chain_2833,blat.proc3825170.chain_2834	4
scaffold_17	retained_intron	14546213	14546320	+	asmbl_19413	none	STRG.20928.1,Trinity_GG_28807_c0_g1_i2,Trinity_GG_28807_c0_g1_i3	3	STRG.20928.3	1
scaffold_13	alternate_exon	14563620	14566043	-	asmbl_10195	none	STRG.16504.4,blat.proc3825156.chain_1272	2	blat.proc3825156.chain_1269	1
scaffold_11	skipped_exon	12904181	12904897	-	asmbl_7102,asmbl_7105	none	STRG.14175.1,blat.proc3825154.chain_2732	2	STRG.14175.2	1
scaffold_18	skipped_exon	9258671	9259564	-	asmbl_20060	none	STRG.21569.4,Trinity_GG_12060_c0_g1_i3,blat.proc3825158.chain_2486	3	STRG.21569.1,Trinity_GG_12060_c0_g1_i1,blat.proc3825158.chain_2488	3
scaffold_10	alt_acceptor	3922239	3922240	+	asmbl_3090	none	blat.proc3825170.chain_927	1	blat.proc3825170.chain_928	1
scaffold_7	alt_acceptor	11659533	11659534	+	asmbl_50183	none	STRG.9284.2	1	STRG.9284.1,blat.proc3825168.chain_1737	2
scaffold_6	alt_acceptor	600778	600779	-	asmbl_48049	none	STRG.7125.3	1	STRG.7125.1,STRG.7125.2,STRG.7125.4,STRG.7125.5,blat.proc3825150.chain_3224,blat.proc3825150.chain_3225	6
scaffold_14	alt_donor	7249150	7249151	+	asmbl_12141	none	STRG.17162.2,blat.proc3825172.chain_1945	2	STRG.17162.1,blat.proc3825172.chain_1944	2
scaffold_16	starts_in_intron	148095	148095	-	asmbl_16835	none	Trinity_GG_10685_c1_g1_i1,blat.proc3825158.chain_150	2	STRG.19010.1,Trinity_GG_10685_c0_g1_i3,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i7,Trinity_GG_10685_c0_g1_i8,blat.proc3825158.chain_147,blat.proc3825158.chain_148	7
scaffold_6	alternate_exon	13224150	13224668	+	asmbl_47498	none	STRG.8084.3	1	STRG.8084.1,STRG.8084.2,blat.proc3825168.chain_571,blat.proc3825168.chain_575,blat.proc3825168.chain_576	5
scaffold_25	alt_acceptor	5831281	5831282	-	asmbl_34288,asmbl_34290,asmbl_34291,asmbl_34292,asmbl_34294	none	STRG.27479.1,STRG.27479.2,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_880	5	STRG.27479.4	1
scaffold_1	ends_in_intron	11542343	11542343	+	asmbl_2114	none	blat.proc3825164.chain_902	1	STRG.762.1,Trinity_GG_17784_c0_g1_i1,Trinity_GG_17784_c0_g1_i2,blat.proc3825164.chain_901	4
scaffold_12	alt_acceptor	8891886	8891887	+	asmbl_7834	none	STRG.14897.1,Trinity_GG_25554_c0_g1_i3,blat.proc3825170.chain_3473	3	STRG.14897.2,STRG.14897.3,Trinity_GG_25554_c0_g1_i2,blat.proc3825170.chain_3471	4
scaffold_7	starts_in_intron	8210315	8210315	+	asmbl_49971	none	blat.proc3825168.chain_1538	1	STRG.9055.1,blat.proc3825168.chain_1537	2
scaffold_11	alt_donor	8903670	8903671	-	asmbl_6887	none	STRG.13912.1,Trinity_GG_7763_c0_g1_i1,blat.proc3825154.chain_2430	3	Trinity_GG_7763_c0_g1_i2,blat.proc3825154.chain_2431	2
scaffold_17	spliced_intron	3839188	3839302	+	asmbl_18741,asmbl_18744	none	STRG.20149.1,blat.proc3825174.chain_972,blat.proc3825174.chain_973	3	blat.proc3825174.chain_971	1
scaffold_9	starts_in_intron	12183819	12183819	+	asmbl_54420	none	Trinity_GG_23762_c0_g1_i1,blat.proc3825170.chain_363	2	STRG.11538.1,blat.proc3825170.chain_364	2
scaffold_1	starts_in_intron	18488232	18488232	-	asmbl_1109,asmbl_1110,asmbl_1116	none	STRG.1298.4,STRG.1298.7,blat.proc3825148.chain_1317,blat.proc3825148.chain_1318	4	STRG.1298.2,STRG.1298.3,STRG.1298.6,blat.proc3825148.chain_1319,blat.proc3825148.chain_1320,blat.proc3825148.chain_1321,blat.proc3825148.chain_1322	7
scaffold_5	spliced_intron	6012524	6013080	-	asmbl_44077,asmbl_44081	none	STRG.6019.1,STRG.6019.3,blat.proc3825150.chain_2168	3	STRG.6019.2,blat.proc3825150.chain_2169	2
scaffold_6	starts_in_intron	5379501	5379501	-	asmbl_48414	none	blat.proc3825150.chain_3687	1	STRG.7504.1,blat.proc3825150.chain_3689	2
scaffold_28	alternate_exon	5574496	5575492	+	asmbl_37591,asmbl_37592,asmbl_37593	none	STRG.29692.1,STRG.29692.2,Trinity_GG_33772_c0_g1_i1,Trinity_GG_33772_c0_g1_i2,Trinity_GG_33772_c0_g1_i5,blat.proc3825178.chain_2874,blat.proc3825178.chain_2876,blat.proc3825178.chain_2879	8	STRG.29692.3,Trinity_GG_33772_c0_g1_i4,blat.proc3825178.chain_2878	3
scaffold_22	spliced_intron	10320358	10320529	+	asmbl_30355	none	blat.proc3825176.chain_2362	1	STRG.25386.1	1
scaffold_10	ends_in_intron	634675	634675	-	asmbl_3975	none	Trinity_GG_6642_c0_g1_i1,blat.proc3825154.chain_485	2	STRG.11945.1,STRG.11945.2,STRG.11945.3,STRG.11945.4,blat.proc3825154.chain_483,blat.proc3825154.chain_484	6
scaffold_20	alternate_exon	3259007	3259132	+	asmbl_26527	none	STRG.23056.2	1	STRG.23056.1,blat.proc3825176.chain_218	2
scaffold_27	alt_acceptor	5927546	5927547	-	asmbl_37042	none	STRG.29001.1,blat.proc3825162.chain_2238	2	STRG.29001.2,blat.proc3825162.chain_2239,blat.proc3825162.chain_2240	3
scaffold_18	ends_in_intron	7185150	7185150	+	asmbl_20713	none	Trinity_GG_29133_c0_g1_i2,blat.proc3825174.chain_2427	2	STRG.21422.1,STRG.21422.2,STRG.21422.3,Trinity_GG_29133_c0_g1_i1,blat.proc3825174.chain_2426	5
scaffold_22	retained_intron	7901370	7901566	-	asmbl_29441,asmbl_29443	none	STRG.25136.1,STRG.25136.3,Trinity_GG_14049_c0_g1_i2,blat.proc3825160.chain_2289	4	STRG.25136.2,Trinity_GG_14049_c0_g1_i1,blat.proc3825160.chain_2290	3
scaffold_1	skipped_exon	13565696	13566054	-	asmbl_833	none	STRG.974.1	1	blat.proc3825148.chain_863	1
scaffold_8	alt_acceptor	16499324	16499325	-	asmbl_52420	none	STRG.10629.5	1	STRG.10629.3,STRG.10629.4,blat.proc3825152.chain_2928,blat.proc3825152.chain_2932,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2941	7
scaffold_19	alternate_exon	4863379	4863422	+	asmbl_21345	none	STRG.22065.1	1	STRG.22065.3,blat.proc3825174.chain_3068	2
scaffold_27	spliced_intron	3063415	3063502	+	asmbl_36180	none	STRG.28792.1	1	STRG.28792.2,Trinity_GG_33190_c0_g1_i7,blat.proc3825178.chain_1820,blat.proc3825178.chain_1821,blat.proc3825178.chain_1822,blat.proc3825178.chain_1823	6
scaffold_22	alt_acceptor	10984494	10984495	-	asmbl_29635,asmbl_29636	none	STRG.25437.1,STRG.25437.3,Trinity_GG_14239_c1_g1_i2,Trinity_GG_14239_c1_g1_i3,blat.proc3825160.chain_2613,blat.proc3825160.chain_2615	6	Trinity_GG_14239_c1_g1_i1,blat.proc3825160.chain_2614	2
scaffold_5	starts_in_intron	109390	109390	-	asmbl_43753	none	Trinity_GG_3150_c0_g1_i2	1	STRG.5574.1,STRG.5574.2	2
scaffold_28	ends_in_intron	2341516	2341516	-	asmbl_38048	none	blat.proc3825162.chain_2608	1	Trinity_GG_16495_c0_g1_i3,blat.proc3825162.chain_2607,blat.proc3825162.chain_2609	3
scaffold_24	spliced_intron	7864239	7864383	-	asmbl_33074	none	STRG.26842.2,blat.proc3825162.chain_225	2	STRG.26842.1,blat.proc3825162.chain_223	2
scaffold_18	spliced_intron	6005536	6006129	+	asmbl_20654,asmbl_20659	none	STRG.21369.1,blat.proc3825174.chain_2357,blat.proc3825174.chain_2359	3	blat.proc3825174.chain_2355,blat.proc3825174.chain_2358	2
scaffold_24	alt_acceptor	2465449	2465450	-	asmbl_32788,asmbl_32789	none	STRG.26473.2,STRG.26473.4,blat.proc3825160.chain_3604,blat.proc3825160.chain_3605	4	STRG.26473.1,STRG.26473.3	2
scaffold_7	alt_donor	712501	712502	-	asmbl_50693,asmbl_50696	none	STRG.8610.1,blat.proc3825152.chain_1090,blat.proc3825152.chain_1093	3	blat.proc3825152.chain_1092	1
scaffold_6	alt_acceptor	17799090	17799091	-	asmbl_49197	none	STRG.8463.2,STRG.8463.3,blat.proc3825152.chain_851	3	STRG.8463.1,blat.proc3825152.chain_850	2
scaffold_17	spliced_intron	3998821	3998969	+	asmbl_18753,asmbl_18756,asmbl_18757,asmbl_18759,asmbl_18760	none	STRG.20160.2,STRG.20160.3,STRG.20160.4,blat.proc3825174.chain_1031,blat.proc3825174.chain_1034,blat.proc3825174.chain_1035	6	STRG.20160.1,blat.proc3825174.chain_1032,blat.proc3825174.chain_1033	3
scaffold_20	alt_donor	9656219	9656220	+	asmbl_26879	none	STRG.23507.1,Trinity_GG_30297_c0_g1_i1,blat.proc3825176.chain_662	3	STRG.23507.2	1
scaffold_25	retained_intron	1906533	1906576	-	asmbl_34053	none	STRG.27201.4	1	STRG.27201.3	1
scaffold_2	starts_in_intron	18779901	18779901	-	asmbl_23827	none	STRG.2760.1,blat.proc3825148.chain_2704	2	STRG.2760.2	1
scaffold_15	retained_intron	11728507	11728700	-	asmbl_14530	none	STRG.18629.2	1	STRG.18629.1	1
scaffold_10	retained_intron	3078017	3078168	+	asmbl_3028	none	blat.proc3825170.chain_817	1	STRG.12131.1,blat.proc3825170.chain_816	2
scaffold_4	spliced_intron	6705014	6705099	+	asmbl_41423	none	STRG.4531.2	1	STRG.4531.1,blat.proc3825166.chain_909	2
scaffold_13	retained_intron	1532474	1532709	+	asmbl_10566	none	Trinity_GG_25847_c0_g1_i3,blat.proc3825172.chain_275	2	STRG.15517.1,Trinity_GG_25847_c0_g1_i1,Trinity_GG_25847_c0_g1_i2,blat.proc3825172.chain_274,blat.proc3825172.chain_276	5
scaffold_3	starts_in_intron	5006010	5006010	+	asmbl_40054,asmbl_40058	none	Trinity_GG_19135_c0_g1_i2,blat.proc3825164.chain_3488,blat.proc3825164.chain_3489	3	STRG.3206.1,STRG.3206.2	2
scaffold_13	retained_exon	6397184	6397232	+	asmbl_10923,asmbl_10925,asmbl_10926,asmbl_10930	none	STRG.15929.2,STRG.15929.3,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_654,blat.proc3825172.chain_655	8	STRG.15929.1,STRG.15929.4,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	5
scaffold_10	spliced_intron	326050	326526	-	asmbl_3930	none	STRG.11917.1,Trinity_GG_6622_c0_g1_i2,blat.proc3825154.chain_434	3	STRG.11917.2,Trinity_GG_6622_c0_g1_i1,blat.proc3825154.chain_435	3
scaffold_8	alt_donor	11270343	11270344	-	asmbl_52141	none	STRG.10337.1,blat.proc3825152.chain_2577	2	STRG.10337.2,blat.proc3825152.chain_2579	2
scaffold_1	alternate_exon	9174738	9174768	-	asmbl_523	none	STRG.608.2	1	STRG.608.1	1
scaffold_24	alternate_exon	9121548	9121692	+	asmbl_32519	none	blat.proc3825178.chain_96	1	STRG.26939.1,Trinity_GG_32182_c0_g1_i4,blat.proc3825178.chain_95	3
scaffold_4	retained_intron	16480998	16481293	-	asmbl_43178	none	STRG.5225.2,blat.proc3825150.chain_1406	2	STRG.5225.3,blat.proc3825150.chain_1403	2
scaffold_14	spliced_intron	6987427	6987843	-	asmbl_13170	none	STRG.17138.1,blat.proc3825156.chain_1952	2	blat.proc3825156.chain_1953	1
scaffold_12	alt_acceptor	11111901	11111902	-	asmbl_8784	none	STRG.15059.1,blat.proc3825154.chain_3534	2	STRG.15059.2,Trinity_GG_8384_c0_g1_i2,blat.proc3825154.chain_3533	3
scaffold_18	ends_in_intron	8883093	8883093	-	asmbl_20037	none	Trinity_GG_12055_c1_g1_i1,blat.proc3825158.chain_2472	2	STRG.21551.2	1
scaffold_13	skipped_exon	1380070	1380423	-	asmbl_9406,asmbl_9407	none	blat.proc3825156.chain_341,blat.proc3825156.chain_343	2	STRG.15508.1,STRG.15508.2,blat.proc3825156.chain_340,blat.proc3825156.chain_342	4
scaffold_6	retained_intron	9585760	9586086	+	asmbl_47232	none	Trinity_GG_21611_c0_g1_i1,blat.proc3825168.chain_285	2	STRG.7810.1,blat.proc3825168.chain_286	2
scaffold_11	ends_in_intron	7084511	7084511	+	asmbl_5656	none	blat.proc3825170.chain_2260	1	STRG.13737.1,blat.proc3825170.chain_2259	2
scaffold_7	ends_in_intron	12366159	12366159	-	asmbl_51201	none	Trinity_GG_5256_c2_g1_i1,blat.proc3825152.chain_1712	2	STRG.9334.1,STRG.9334.2,Trinity_GG_5256_c0_g1_i3,blat.proc3825152.chain_1706,blat.proc3825152.chain_1707,blat.proc3825152.chain_1709	6
scaffold_3	alt_donor	11307715	11307716	-	asmbl_39142	none	STRG.3563.1,blat.proc3825148.chain_3428	2	blat.proc3825148.chain_3427	1
scaffold_24	skipped_exon	6783805	6784704	-	asmbl_32975	none	STRG.26733.2	1	STRG.26733.1,STRG.26733.4	2
scaffold_18	alternate_exon	7866821	7866927	-	asmbl_19982,asmbl_19983	none	blat.proc3825158.chain_2406,blat.proc3825158.chain_2407	2	STRG.21486.2,blat.proc3825158.chain_2405	2
scaffold_56	retained_intron	4308	4486	-	asmbl_46565	none	STRG.30073.1	1	STRG.30073.2	1
scaffold_18	starts_in_intron	8402574	8402574	+	asmbl_20832	none	STRG.21513.6,blat.proc3825174.chain_2582	2	STRG.21513.1,STRG.21513.2,STRG.21513.3,STRG.21513.4,STRG.21513.5,blat.proc3825174.chain_2580,blat.proc3825174.chain_2581,blat.proc3825174.chain_2583	8
scaffold_9	skipped_exon	18355765	18356507	-	asmbl_55698	none	STRG.11883.2,blat.proc3825154.chain_385	2	STRG.11883.1,blat.proc3825154.chain_384	2
scaffold_26	starts_in_intron	4690886	4690886	-	asmbl_35586,asmbl_35589	none	blat.proc3825162.chain_1412,blat.proc3825162.chain_1413	2	STRG.28194.1,STRG.28194.2,STRG.28194.3,blat.proc3825162.chain_1410	4
scaffold_14	spliced_intron	3388662	3389749	+	asmbl_11941	none	STRG.16928.1,blat.proc3825172.chain_1689	2	Trinity_GG_26615_c0_g1_i1,blat.proc3825172.chain_1688	2
scaffold_2	alt_acceptor	4331414	4331415	-	asmbl_23068	none	STRG.1863.1,blat.proc3825148.chain_1794	2	STRG.1863.2,blat.proc3825148.chain_1793	2
scaffold_24	alternate_exon	7152327	7152372	-	asmbl_33013	none	STRG.26764.2,blat.proc3825162.chain_116	2	STRG.26764.1,blat.proc3825162.chain_117	2
scaffold_11	alt_acceptor	11936610	11936611	-	asmbl_7043	none	STRG.14177.3	1	STRG.14177.2,STRG.14177.4	2
scaffold_6	alt_donor	2819568	2819569	-	asmbl_48164	none	blat.proc3825150.chain_3327	1	STRG.7274.1,blat.proc3825150.chain_3326	2
scaffold_20	alternate_exon	6975539	6975651	+	asmbl_26687	none	STRG.23262.2,blat.proc3825176.chain_446	2	STRG.23262.1	1
scaffold_2	retained_intron	5440602	5440687	+	asmbl_24420	none	STRG.1953.1,blat.proc3825164.chain_2075	2	STRG.1953.2,blat.proc3825164.chain_2074	2
scaffold_2	starts_in_intron	5073683	5073683	-	asmbl_23124	none	STRG.1922.1,blat.proc3825148.chain_1945	2	STRG.1922.2,STRG.1922.3,blat.proc3825148.chain_1946	3
scaffold_2	retained_intron	7938372	7939699	+	asmbl_24598	none	Trinity_GG_18487_c0_g1_i8,Trinity_GG_18487_c0_g1_i9,blat.proc3825164.chain_2246,blat.proc3825164.chain_2249	4	STRG.2090.1,STRG.2090.2,Trinity_GG_18487_c0_g1_i1,Trinity_GG_18487_c0_g1_i6,Trinity_GG_18487_c0_g1_i7,blat.proc3825164.chain_2244,blat.proc3825164.chain_2247,blat.proc3825164.chain_2250	8
scaffold_18	retained_intron	3213856	3213934	+	asmbl_20450	none	Trinity_GG_28951_c0_g1_i1,blat.proc3825174.chain_2092	2	STRG.21160.1,blat.proc3825174.chain_2091	2
scaffold_2	starts_in_intron	16404337	16404337	+	asmbl_25136	none	STRG.2582.2	1	STRG.2582.1,blat.proc3825164.chain_2870,blat.proc3825164.chain_2872	3
scaffold_3	alternate_exon	11521874	11522040	+	asmbl_40355	none	STRG.3583.1,blat.proc3825166.chain_100	2	STRG.3583.2,blat.proc3825166.chain_99	2
scaffold_23	retained_exon	2207890	2207979	-	asmbl_30714	none	STRG.25698.1	1	STRG.25698.2	1
scaffold_18	retained_intron	13804460	13804704	+	asmbl_21038,asmbl_21041	none	Trinity_GG_29370_c0_g1_i1,blat.proc3825174.chain_2837,blat.proc3825174.chain_2839	3	STRG.21822.1,Trinity_GG_29370_c0_g1_i2,Trinity_GG_29370_c0_g1_i3,blat.proc3825174.chain_2835,blat.proc3825174.chain_2836,blat.proc3825174.chain_2838	6
scaffold_11	retained_intron	13092586	13094447	+	asmbl_6033	none	Trinity_GG_25144_c0_g1_i1,Trinity_GG_25144_c1_g1_i2,blat.proc3825170.chain_2745,blat.proc3825170.chain_2749,blat.proc3825170.chain_2753	5	STRG.14188.2,blat.proc3825170.chain_2746,blat.proc3825170.chain_2747	3
scaffold_19	retained_intron	13154555	13154625	-	asmbl_22606	none	blat.proc3825158.chain_3471	1	STRG.22639.1,STRG.22639.2,STRG.22639.3,blat.proc3825158.chain_3470,blat.proc3825158.chain_3472	5
scaffold_15	retained_intron	5738488	5739051	-	asmbl_14230,asmbl_14232,asmbl_14233,asmbl_14234	none	STRG.18261.1,STRG.18261.2,STRG.18261.3,blat.proc3825156.chain_3116	4	STRG.18261.4	1
scaffold_8	alt_acceptor	8269434	8269435	-	asmbl_51948,asmbl_51949	none	STRG.10106.1,Trinity_GG_5646_c0_g1_i1,blat.proc3825152.chain_2383,blat.proc3825152.chain_2384	4	STRG.10106.2,blat.proc3825152.chain_2381	2
scaffold_3	alternate_exon	3323605	3323907	-	asmbl_38775	none	blat.proc3825148.chain_2947	1	blat.proc3825148.chain_2946	1
scaffold_12	alt_donor	14195841	14195842	-	asmbl_9000	none	STRG.15254.1,blat.proc3825154.chain_3748	2	STRG.15254.2	1
scaffold_19	retained_intron	1508758	1509326	+	asmbl_21243	none	STRG.21912.5,Trinity_GG_29420_c0_g2_i1,blat.proc3825174.chain_2938	3	STRG.21912.1,STRG.21912.2,STRG.21912.3,STRG.21912.4,blat.proc3825174.chain_2939	5
scaffold_18	spliced_intron	9170256	9170424	+	asmbl_20879	none	STRG.21559.1,Trinity_GG_29198_c0_g1_i3,blat.proc3825174.chain_2559	3	Trinity_GG_29198_c0_g1_i1,blat.proc3825174.chain_2558	2
scaffold_13	alt_acceptor	519723	519724	+	asmbl_10484,asmbl_10492	none	STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_184	5	STRG.15449.2,STRG.15449.4,blat.proc3825172.chain_182,blat.proc3825172.chain_183	4
scaffold_28	spliced_intron	2810466	2811511	-	asmbl_38087,asmbl_38093	none	STRG.29471.1,blat.proc3825162.chain_2599	2	STRG.29471.4,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	3
scaffold_4	alternate_exon	16718281	16718348	-	asmbl_43209	none	STRG.5250.1,blat.proc3825150.chain_1374	2	STRG.5250.2,blat.proc3825150.chain_1375	2
scaffold_21	starts_in_intron	7508687	7508687	-	asmbl_27834	none	blat.proc3825160.chain_1433	1	STRG.24283.1,blat.proc3825160.chain_1432	2
scaffold_2	spliced_intron	11610034	11610204	+	asmbl_24762,asmbl_24763,asmbl_24764	none	STRG.2268.2,blat.proc3825164.chain_2378,blat.proc3825164.chain_2380	3	STRG.2268.1,blat.proc3825164.chain_2376,blat.proc3825164.chain_2379,blat.proc3825164.chain_2381,blat.proc3825164.chain_2382	5
scaffold_22	alt_acceptor	4873822	4873823	-	asmbl_29279,asmbl_29280	none	STRG.24908.1,STRG.24908.2,blat.proc3825160.chain_2012,blat.proc3825160.chain_2013	4	STRG.24908.3,blat.proc3825160.chain_2014	2
scaffold_17	starts_in_intron	9847189	9847189	-	asmbl_18207	none	STRG.20604.2,blat.proc3825158.chain_1641	2	STRG.20604.1,blat.proc3825158.chain_1642	2
scaffold_10	skipped_exon	4214570	4216360	-	asmbl_4273	none	STRG.12257.2	1	STRG.12257.1,blat.proc3825154.chain_812	2
scaffold_28	starts_in_intron	7256180	7256180	+	asmbl_37657	none	Trinity_GG_33812_c0_g1_i3,blat.proc3825178.chain_2946	2	STRG.29793.1,STRG.29793.2,STRG.29793.3,STRG.29793.4,Trinity_GG_33812_c0_g1_i1,Trinity_GG_33812_c0_g1_i2,blat.proc3825178.chain_2945,blat.proc3825178.chain_2947	8
scaffold_15	starts_in_intron	11138998	11138998	-	asmbl_14483	none	blat.proc3825156.chain_3381	1	blat.proc3825156.chain_3380,blat.proc3825156.chain_3382,blat.proc3825156.chain_3383,blat.proc3825156.chain_3384,blat.proc3825156.chain_3385,blat.proc3825156.chain_3386	6
scaffold_2	alternate_exon	19884203	19884329	-	asmbl_23874	none	STRG.2835.1,blat.proc3825148.chain_2777	2	STRG.2835.2,blat.proc3825148.chain_2778	2
scaffold_6	ends_in_intron	3520081	3520081	+	asmbl_46846	none	Trinity_GG_21363_c0_g1_i1,blat.proc3825166.chain_3593	2	STRG.7362.1,STRG.7362.2	2
scaffold_24	retained_exon	4375882	4376765	+	asmbl_32197	none	STRG.26598.1,Trinity_GG_31980_c1_g1_i1,blat.proc3825176.chain_3483	3	STRG.26598.2	1
scaffold_26	skipped_exon	9840009	9841946	-	asmbl_35793	none	STRG.28545.1,Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	3	STRG.28545.2	1
scaffold_16	retained_intron	4095539	4096600	+	asmbl_16176	none	Trinity_GG_27809_c0_g1_i8	1	blat.proc3825174.chain_61	1
scaffold_14	ends_in_intron	12151387	12151387	+	asmbl_12418	none	blat.proc3825172.chain_2277	1	STRG.17548.1,blat.proc3825172.chain_2280	2
scaffold_21	starts_in_intron	7494887	7494887	-	asmbl_27826	none	blat.proc3825160.chain_1416	1	STRG.24281.1,STRG.24281.2,blat.proc3825160.chain_1414,blat.proc3825160.chain_1415	4
scaffold_9	starts_in_intron	5297709	5297709	+	asmbl_54024	none	STRG.11112.4,blat.proc3825168.chain_3573	2	STRG.11112.1,STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6
scaffold_12	alt_donor	16338941	16338942	+	asmbl_8162	none	STRG.15393.2,blat.proc3825172.chain_104	2	STRG.15393.1,blat.proc3825172.chain_105	2
scaffold_20	retained_exon	5550444	5550486	-	asmbl_25767,asmbl_25768,asmbl_25770,asmbl_25771	none	STRG.23182.1,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216,blat.proc3825160.chain_217	7	STRG.23182.2,STRG.23182.3	2
scaffold_5	ends_in_intron	16666270	16666270	+	asmbl_46120	none	blat.proc3825166.chain_3023	1	STRG.6868.1,blat.proc3825166.chain_3022	2
scaffold_13	starts_in_intron	15752438	15752438	+	asmbl_11538	none	Trinity_GG_26444_c0_g1_i6,blat.proc3825172.chain_1369	2	STRG.16624.2,Trinity_GG_26444_c0_g1_i1,blat.proc3825172.chain_1372	3
scaffold_5	starts_in_intron	13810261	13810261	-	asmbl_44566	none	STRG.6602.3	1	STRG.6602.1,blat.proc3825150.chain_2813,blat.proc3825150.chain_2814,blat.proc3825150.chain_2815	4
scaffold_18	spliced_intron	8912338	8912443	-	asmbl_20044,asmbl_20045,asmbl_20046,asmbl_20047,asmbl_20050,asmbl_20051,asmbl_20053	none	STRG.21558.1,STRG.21558.3,STRG.21558.4,STRG.21558.6,STRG.21558.7,STRG.21558.8,blat.proc3825158.chain_2447,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451,blat.proc3825158.chain_2453	10	STRG.21558.9,Trinity_GG_12043_c0_g1_i4,blat.proc3825158.chain_2448	3
scaffold_26	alt_donor	5404193	5404194	+	asmbl_34986	none	blat.proc3825178.chain_1295	1	STRG.28247.1	1
scaffold_6	retained_exon	12551792	12552239	-	asmbl_48825	none	STRG.8017.1	1	STRG.8017.3,blat.proc3825152.chain_423	2
scaffold_9	alternate_exon	12630570	12631059	+	asmbl_54447,asmbl_54451	none	STRG.11586.3,blat.proc3825170.chain_401,blat.proc3825170.chain_405	3	STRG.11586.1,STRG.11586.2,blat.proc3825170.chain_404,blat.proc3825170.chain_406	4
scaffold_24	retained_exon	10133801	10133933	+	asmbl_32543	none	STRG.26980.1,Trinity_GG_32205_c1_g1_i1,blat.proc3825178.chain_131	3	STRG.26980.2	1
scaffold_4	skipped_exon	4413750	4415344	+	asmbl_41254	none	STRG.4349.3,blat.proc3825166.chain_843	2	STRG.4349.1,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,blat.proc3825166.chain_849,blat.proc3825166.chain_851	5
scaffold_10	retained_intron	1980607	1981557	-	asmbl_4091	none	STRG.12051.1,blat.proc3825154.chain_616	2	STRG.12051.2,blat.proc3825154.chain_617	2
scaffold_15	alt_acceptor	12421932	12421933	+	asmbl_15562	none	blat.proc3825172.chain_3324	1	STRG.18696.2	1
scaffold_6	alternate_exon	18266655	18266920	-	asmbl_49236	none	STRG.8505.3	1	STRG.8505.2	1
scaffold_3	alternate_exon	11975635	11978535	+	asmbl_40384	none	STRG.3620.1,Trinity_GG_19308_c0_g1_i2,Trinity_GG_19308_c2_g1_i1,blat.proc3825166.chain_49,blat.proc3825166.chain_53	5	Trinity_GG_19308_c0_g1_i3,blat.proc3825166.chain_48	2
scaffold_13	starts_in_intron	16327270	16327270	-	asmbl_10290,asmbl_10291	none	STRG.16688.1,STRG.16688.3,blat.proc3825156.chain_1462,blat.proc3825156.chain_1463	4	STRG.16688.2	1
scaffold_8	ends_in_intron	12914764	12914764	-	asmbl_52251,asmbl_52252	none	STRG.10480.6,STRG.10480.7,blat.proc3825152.chain_2736,blat.proc3825152.chain_2737	4	STRG.10480.2,STRG.10480.3,STRG.10480.4,STRG.10480.5,blat.proc3825152.chain_2738	5
scaffold_2	skipped_exon	481946	483382	-	asmbl_22803	none	STRG.1532.3	1	STRG.1532.1,STRG.1532.2,blat.proc3825148.chain_1467	3
scaffold_8	retained_intron	4860984	4861241	-	asmbl_51813	none	Trinity_GG_5566_c0_g2_i1,blat.proc3825152.chain_2242	2	STRG.9948.1,Trinity_GG_5566_c0_g1_i2,blat.proc3825152.chain_2240,blat.proc3825152.chain_2241	4
scaffold_10	spliced_intron	7765135	7765301	-	asmbl_4550,asmbl_4551	none	STRG.12568.1,STRG.12568.2,blat.proc3825154.chain_1149	3	blat.proc3825154.chain_1148	1
scaffold_17	alternate_exon	8220043	8220292	+	asmbl_18952	none	STRG.20449.2	1	STRG.20449.3	1
scaffold_28	alternate_exon	5755310	5755418	-	asmbl_38320	none	STRG.29715.1,Trinity_GG_16672_c0_g1_i1,blat.proc3825162.chain_2911	3	STRG.29715.2	1
scaffold_2	alt_acceptor	7782117	7782118	+	asmbl_24576	none	blat.proc3825164.chain_2228	1	STRG.2075.5	1
scaffold_10	alt_donor	11833308	11833309	+	asmbl_3498	none	STRG.12819.2	1	STRG.12819.1,blat.proc3825170.chain_1433	2
scaffold_26	alt_acceptor	3790231	3790232	+	asmbl_34831	none	STRG.28067.2	1	STRG.28067.1,STRG.28067.3	2
scaffold_12	alt_acceptor	16525651	16525652	-	asmbl_9130	none	STRG.15414.3	1	STRG.15414.1,STRG.15414.2,Trinity_GG_8632_c0_g1_i2,blat.proc3825156.chain_237	4
scaffold_14	alt_acceptor	9600481	9600482	+	asmbl_12292	none	STRG.17351.1,blat.proc3825172.chain_2133	2	STRG.17351.2	1
scaffold_20	retained_exon	426154	426290	+	asmbl_26352	none	STRG.22745.2	1	STRG.22745.1	1
scaffold_18	retained_intron	8912486	8913423	-	asmbl_20042,asmbl_20044,asmbl_20046,asmbl_20047,asmbl_20050	none	STRG.21558.3,STRG.21558.6,STRG.21558.7,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451	7	STRG.21558.4,blat.proc3825158.chain_2447	2
scaffold_2	retained_intron	9322557	9323761	-	asmbl_23384	none	STRG.2178.3	1	blat.proc3825148.chain_2158	1
scaffold_6	alternate_exon	8579531	8581115	+	asmbl_47154	none	blat.proc3825168.chain_181	1	STRG.7738.4	1
scaffold_7	retained_exon	1430110	1430166	-	asmbl_50728	none	STRG.8647.2	1	STRG.8647.1	1
scaffold_18	retained_exon	246220	246574	-	asmbl_19572	none	STRG.20978.2,blat.proc3825158.chain_1927	2	STRG.20978.1,blat.proc3825158.chain_1928	2
scaffold_11	alternate_exon	6710835	6711356	-	asmbl_6736	none	STRG.13716.5,Trinity_GG_7683_c1_g1_i1,blat.proc3825154.chain_2289	3	STRG.13716.6,Trinity_GG_7683_c0_g1_i2,blat.proc3825154.chain_2288	3
scaffold_21	alt_acceptor	7387525	7387526	+	asmbl_28732	none	STRG.24265.1	1	STRG.24265.2,blat.proc3825176.chain_1412	2
scaffold_8	spliced_intron	7804828	7805076	-	asmbl_51924,asmbl_51925,asmbl_51927,asmbl_51929	none	STRG.10100.1,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316,blat.proc3825152.chain_2317	5	blat.proc3825152.chain_2313,blat.proc3825152.chain_2318	2
scaffold_24	alt_donor	3655919	3655920	+	asmbl_32151,asmbl_32152	none	STRG.26550.5,blat.proc3825176.chain_3466,blat.proc3825176.chain_3467	3	STRG.26550.1,STRG.26550.2,STRG.26550.3,STRG.26550.6,Trinity_GG_31970_c0_g1_i5,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463,blat.proc3825176.chain_3465,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469,blat.proc3825176.chain_3470	11
scaffold_1	ends_in_intron	8752756	8752756	-	asmbl_493	none	Trinity_GG_326_c0_g1_i5,blat.proc3825148.chain_603	2	STRG.579.3,blat.proc3825148.chain_597	2
scaffold_15	spliced_intron	15355053	15355143	+	asmbl_15755,asmbl_15761	none	STRG.18922.2,blat.proc3825172.chain_3562,blat.proc3825172.chain_3566	3	STRG.18922.1,Trinity_GG_27686_c0_g1_i4,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3564,blat.proc3825172.chain_3565	6
scaffold_13	retained_intron	8518137	8518344	+	asmbl_11133	none	Trinity_GG_26177_c0_g1_i1	1	STRG.16127.1,blat.proc3825172.chain_902	2
scaffold_24	alt_acceptor	4319620	4319621	+	asmbl_32191	none	Trinity_GG_31987_c0_g1_i2,blat.proc3825176.chain_3495	2	STRG.26600.2,STRG.26600.3,Trinity_GG_31987_c0_g1_i1,blat.proc3825176.chain_3494	4
scaffold_20	starts_in_intron	7182615	7182615	+	asmbl_26701	none	Trinity_GG_30167_c1_g1_i1,blat.proc3825176.chain_465	2	STRG.23286.1,blat.proc3825176.chain_468	2
scaffold_11	starts_in_intron	5519872	5519872	-	asmbl_6673	none	blat.proc3825154.chain_2205	1	STRG.13623.1,blat.proc3825154.chain_2204	2
scaffold_4	starts_in_intron	7993603	7993603	+	asmbl_41524	none	Trinity_GG_19881_c0_g1_i5,blat.proc3825166.chain_1080	2	STRG.4618.2,STRG.4618.3,blat.proc3825166.chain_1079,blat.proc3825166.chain_1082	4
scaffold_5	alt_acceptor	12540560	12540561	-	asmbl_44463,asmbl_44465	none	STRG.6499.2,STRG.6499.3,blat.proc3825150.chain_2702	3	STRG.6499.1	1
scaffold_19	skipped_exon	11483212	11483614	-	asmbl_22414	none	blat.proc3825158.chain_3244	1	STRG.22486.2,blat.proc3825158.chain_3247	2
scaffold_4	alt_acceptor	19571994	19571995	+	asmbl_42153	none	STRG.5542.1,blat.proc3825166.chain_1761	2	STRG.5542.2	1
scaffold_18	alt_donor	6906420	6906421	+	asmbl_20690	none	STRG.21395.1,Trinity_GG_29118_c0_g1_i2,blat.proc3825174.chain_2405	3	STRG.21395.2	1
scaffold_15	retained_exon	14633628	14633734	-	asmbl_14732	none	STRG.18877.1,blat.proc3825156.chain_3750	2	STRG.18877.2,blat.proc3825156.chain_3749	2
scaffold_28	starts_in_intron	3818448	3818448	-	asmbl_38175	none	blat.proc3825162.chain_2744	1	STRG.29582.1,STRG.29582.3,blat.proc3825162.chain_2742,blat.proc3825162.chain_2743,blat.proc3825162.chain_2745	5
scaffold_11	spliced_intron	262676	262775	-	asmbl_6389,asmbl_6391	none	STRG.13270.1,blat.proc3825154.chain_1851,blat.proc3825154.chain_1852	3	blat.proc3825154.chain_1850	1
scaffold_15	alternate_exon	9739035	9739186	-	asmbl_14405	none	STRG.18492.1,blat.proc3825156.chain_3291	2	STRG.18492.3	1
scaffold_7	spliced_intron	13221544	13221715	+	asmbl_50329,asmbl_50331	none	STRG.9435.2,Trinity_GG_22553_c0_g1_i2,blat.proc3825168.chain_1956	3	STRG.9435.1,Trinity_GG_22553_c0_g1_i1,blat.proc3825168.chain_1955	3
scaffold_1	alternate_exon	20469377	20469410	-	asmbl_1181	none	STRG.1398.2	1	STRG.1398.1	1
scaffold_18	skipped_exon	10187665	10188039	-	asmbl_20101	none	STRG.21618.3	1	blat.proc3825158.chain_2524	1
scaffold_2	alternate_exon	3898545	3898886	+	asmbl_24319,asmbl_24322	none	STRG.1826.3,blat.proc3825164.chain_2002,blat.proc3825164.chain_2003	3	STRG.1826.1,blat.proc3825164.chain_1999,blat.proc3825164.chain_2001,blat.proc3825164.chain_2004	4
scaffold_16	alternate_exon	8641863	8641954	+	asmbl_16434	none	STRG.19492.4	1	STRG.19492.1,STRG.19492.2,STRG.19492.3,blat.proc3825174.chain_368	4
scaffold_19	retained_intron	11482922	11483072	-	asmbl_22406	none	Trinity_GG_12512_c0_g1_i1,blat.proc3825158.chain_3246	2	STRG.22486.1,STRG.22486.2,blat.proc3825158.chain_3244,blat.proc3825158.chain_3245,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	6
scaffold_5	alternate_exon	5738076	5739398	+	asmbl_45365	none	STRG.5992.2,blat.proc3825166.chain_2134	2	STRG.5992.3,blat.proc3825166.chain_2133	2
scaffold_20	retained_intron	11438436	11438575	+	asmbl_27044	none	STRG.23652.1,blat.proc3825176.chain_817,blat.proc3825176.chain_818	3	STRG.23652.2,STRG.23652.3,blat.proc3825176.chain_819,blat.proc3825176.chain_820	4
scaffold_13	retained_intron	9254392	9254501	+	asmbl_11189	none	blat.proc3825172.chain_880	1	STRG.16187.1,blat.proc3825172.chain_879	2
scaffold_10	alternate_exon	9546856	9547360	+	asmbl_3398	none	STRG.12711.4,Trinity_GG_24296_c2_g1_i1,blat.proc3825170.chain_1289	3	STRG.12711.1,STRG.12711.2,STRG.12711.3	3
scaffold_28	alt_donor	8153960	8153961	+	asmbl_37729	none	STRG.29884.2	1	STRG.29884.1	1
scaffold_7	starts_in_intron	13958118	13958118	+	asmbl_50393	none	blat.proc3825168.chain_2026	1	STRG.9495.1,STRG.9495.2,STRG.9495.3,blat.proc3825168.chain_2027,blat.proc3825168.chain_2028	5
scaffold_5	alt_acceptor	7320502	7320503	+	asmbl_45490,asmbl_45492	none	STRG.6129.1,blat.proc3825166.chain_2350	2	STRG.6129.2	1
scaffold_12	alt_donor	14882804	14882805	+	asmbl_8093,asmbl_8094	none	STRG.15273.1,STRG.15273.3,blat.proc3825170.chain_3713	3	STRG.15273.2,Trinity_GG_25690_c0_g1_i1,blat.proc3825170.chain_3712	3
scaffold_10	spliced_intron	13563746	13563878	-	asmbl_4911	none	STRG.12957.2,blat.proc3825154.chain_1592	2	STRG.12957.1,Trinity_GG_7263_c0_g1_i1,blat.proc3825154.chain_1593	3
scaffold_4	starts_in_intron	4093817	4093817	+	asmbl_41228	none	STRG.4315.5	1	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,Trinity_GG_19675_c0_g1_i16,Trinity_GG_19675_c0_g1_i17,blat.proc3825166.chain_701,blat.proc3825166.chain_704,blat.proc3825166.chain_707,blat.proc3825166.chain_708,blat.proc3825166.chain_711	11
scaffold_8	starts_in_intron	6904170	6904170	+	asmbl_52969	none	Trinity_GG_22861_c0_g1_i2,blat.proc3825168.chain_2535	2	STRG.10051.1,STRG.10051.2,STRG.10051.3,blat.proc3825168.chain_2537	4
scaffold_22	starts_in_intron	8076486	8076486	+	asmbl_30260	none	Trinity_GG_31209_c0_g1_i2,blat.proc3825176.chain_2234	2	STRG.25162.1,blat.proc3825176.chain_2235	2
scaffold_14	retained_intron	12707267	12707317	-	asmbl_13590	none	STRG.17584.1	1	STRG.17584.2	1
scaffold_4	alt_acceptor	13415774	13415775	+	asmbl_41789,asmbl_41790	none	STRG.4977.2,STRG.4977.3	2	STRG.4977.1,blat.proc3825166.chain_1334,blat.proc3825166.chain_1336	3
scaffold_1	ends_in_intron	2500795	2500795	+	asmbl_1544	none	Trinity_GG_17410_c0_g1_i2,blat.proc3825164.chain_244	2	STRG.161.1,Trinity_GG_17410_c0_g1_i1,blat.proc3825164.chain_243	3
scaffold_1	starts_in_intron	11426120	11426120	+	asmbl_2102	none	STRG.751.3,Trinity_GG_17781_c0_g1_i3,blat.proc3825164.chain_892	3	STRG.751.1,STRG.751.2,blat.proc3825164.chain_893,blat.proc3825164.chain_894	4
scaffold_13	alt_donor	3355609	3355610	-	asmbl_9537	none	STRG.15647.2	1	STRG.15647.1,blat.proc3825156.chain_528,blat.proc3825156.chain_529	3
scaffold_5	retained_exon	14262395	14262430	+	asmbl_45919,asmbl_45921,asmbl_45923	none	STRG.6638.4,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	3	blat.proc3825166.chain_2786	1
scaffold_12	alt_acceptor	9646726	9646727	-	asmbl_8685	none	STRG.14942.2	1	STRG.14942.1,blat.proc3825154.chain_3459	2
scaffold_7	spliced_intron	13546792	13546895	+	asmbl_50358,asmbl_50361	none	STRG.9464.1,blat.proc3825168.chain_1994,blat.proc3825168.chain_1995	3	blat.proc3825168.chain_1996	1
scaffold_9	starts_in_intron	13300954	13300954	-	asmbl_55425	none	blat.proc3825154.chain_4	1	STRG.11628.1,STRG.11628.2,STRG.11628.3,STRG.11628.4,STRG.11628.5	5
scaffold_27	retained_intron	3874917	3875034	+	asmbl_36230	none	blat.proc3825178.chain_2054	1	blat.proc3825178.chain_2052,blat.proc3825178.chain_2053	2
scaffold_2	alt_acceptor	20441835	20441836	+	asmbl_25332	none	STRG.2885.2	1	STRG.2885.1,Trinity_GG_18916_c0_g1_i1,blat.proc3825164.chain_3086	3
scaffold_6	alt_donor	573750	573751	+	asmbl_46667	none	STRG.7115.2,blat.proc3825166.chain_3277	2	Trinity_GG_21206_c0_g1_i3,blat.proc3825166.chain_3278	2
scaffold_16	retained_exon	10157081	10157182	-	asmbl_17306,asmbl_17308	none	STRG.19603.1,STRG.19603.2,blat.proc3825158.chain_710	3	STRG.19603.3	1
scaffold_4	retained_intron	4691328	4691558	+	asmbl_41303	none	blat.proc3825166.chain_814	1	STRG.4379.1,blat.proc3825166.chain_813,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_818,blat.proc3825166.chain_819,blat.proc3825166.chain_820	7
scaffold_6	alt_donor	11514214	11514215	+	asmbl_47342	none	STRG.7946.1,Trinity_GG_21649_c0_g1_i1,blat.proc3825168.chain_356	3	STRG.7946.2,Trinity_GG_21649_c0_g1_i2,blat.proc3825168.chain_355	3
scaffold_25	ends_in_intron	6522423	6522423	+	asmbl_33637	none	STRG.27531.2,blat.proc3825178.chain_631	2	STRG.27531.1,Trinity_GG_32484_c0_g1_i1,blat.proc3825178.chain_630	3
scaffold_23	spliced_intron	4900167	4900265	+	asmbl_31532,asmbl_31533,asmbl_31536,asmbl_31537,asmbl_31538	none	STRG.25884.1,STRG.25884.2,STRG.25884.3,STRG.25884.4,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817	8	Trinity_GG_31591_c0_g1_i2,Trinity_GG_31591_c0_g1_i5,blat.proc3825176.chain_2818,blat.proc3825176.chain_2819	4
scaffold_5	retained_intron	15767254	15767399	+	asmbl_46016,asmbl_46018,asmbl_46019,asmbl_46024	none	blat.proc3825166.chain_2915,blat.proc3825166.chain_2919,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922	4	STRG.6771.1,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2923	5
scaffold_28	spliced_intron	2808976	2809341	-	asmbl_38086,asmbl_38087,asmbl_38088,asmbl_38090,asmbl_38091	none	STRG.29471.1,STRG.29471.2,STRG.29471.4,blat.proc3825162.chain_2598,blat.proc3825162.chain_2601	5	STRG.29471.3,blat.proc3825162.chain_2599,blat.proc3825162.chain_2600	3
scaffold_22	retained_exon	4239310	4239534	-	asmbl_29220	none	blat.proc3825160.chain_2066	1	STRG.24845.2,Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065	3
scaffold_8	alt_donor	9947034	9947035	-	asmbl_52080	none	STRG.10246.3,Trinity_GG_5714_c0_g1_i1,blat.proc3825152.chain_2514	3	STRG.10246.1,blat.proc3825152.chain_2516	2
scaffold_2	alt_donor	14021578	14021579	+	asmbl_24871	none	STRG.2398.2	1	STRG.2398.1,Trinity_GG_18647_c0_g1_i1,blat.proc3825164.chain_2574,blat.proc3825164.chain_2577	4
scaffold_20	retained_intron	10249203	10249289	-	asmbl_26098	none	blat.proc3825160.chain_662	1	STRG.23572.1,blat.proc3825160.chain_660,blat.proc3825160.chain_663	3
scaffold_7	retained_intron	12279110	12279796	+	asmbl_50240	none	Trinity_GG_22453_c0_g1_i2,blat.proc3825168.chain_1765	2	STRG.9323.1,blat.proc3825168.chain_1766,blat.proc3825168.chain_1767	3
scaffold_8	retained_exon	16503929	16504096	-	asmbl_52411,asmbl_52414,asmbl_52415,asmbl_52417,asmbl_52418	none	STRG.10629.1,blat.proc3825152.chain_2929,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	6	STRG.10629.4,STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2931,blat.proc3825152.chain_2934,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	8
scaffold_11	skipped_exon	3556958	3559422	-	asmbl_6552	none	STRG.13483.2	1	STRG.13483.1,blat.proc3825154.chain_2066,blat.proc3825154.chain_2068	3
scaffold_20	retained_exon	11481215	11481277	+	asmbl_27051,asmbl_27058	none	STRG.23653.1,STRG.23653.2,Trinity_GG_30405_c0_g1_i2,blat.proc3825176.chain_846	4	STRG.23653.3,Trinity_GG_30405_c0_g1_i1,Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_845,blat.proc3825176.chain_847	5
scaffold_10	alternate_exon	16252754	16253034	+	asmbl_3708,asmbl_3710	none	STRG.13106.2,STRG.13106.3,blat.proc3825170.chain_1658	3	STRG.13106.1,Trinity_GG_24504_c0_g1_i2,blat.proc3825170.chain_1659	3
scaffold_20	alt_acceptor	10384686	10384687	+	asmbl_26959	none	STRG.23583.3	1	STRG.23583.1,STRG.23583.2,STRG.23583.4,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_668,blat.proc3825176.chain_670,blat.proc3825176.chain_671	8
scaffold_21	starts_in_intron	6489404	6489404	+	asmbl_28652	none	blat.proc3825176.chain_1386	1	STRG.24171.1,STRG.24171.3,blat.proc3825176.chain_1385	3
scaffold_10	retained_intron	12069498	12070132	+	asmbl_3527	none	STRG.12844.1,blat.proc3825170.chain_1370	2	STRG.12844.2,blat.proc3825170.chain_1371	2
scaffold_12	retained_intron	12285468	12285562	-	asmbl_8853	none	STRG.15127.2	1	STRG.15127.3	1
scaffold_27	ends_in_intron	7012036	7012036	-	asmbl_37090	none	STRG.29069.3	1	STRG.29069.2	1
scaffold_23	ends_in_intron	10203506	10203506	-	asmbl_31136	none	Trinity_GG_14642_c0_g1_i6,blat.proc3825160.chain_3338	2	STRG.26231.1,STRG.26231.2,Trinity_GG_14642_c0_g1_i7,blat.proc3825160.chain_3334,blat.proc3825160.chain_3336,blat.proc3825160.chain_3339,blat.proc3825160.chain_3340	7
scaffold_7	spliced_intron	5063228	5063324	-	asmbl_50871	none	STRG.8842.1	1	STRG.8842.2,blat.proc3825152.chain_1309	2
scaffold_13	alt_acceptor	3154946	3154947	+	asmbl_10666	none	STRG.15624.2	1	STRG.15624.1,blat.proc3825172.chain_400	2
scaffold_5	retained_intron	19351052	19351309	-	asmbl_44901	none	blat.proc3825150.chain_3157	1	STRG.7034.1,STRG.7034.2,blat.proc3825150.chain_3156	3
scaffold_4	spliced_intron	5228399	5230621	-	asmbl_42573	none	STRG.4416.5,blat.proc3825150.chain_649	2	STRG.4416.1,STRG.4416.3,Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_651	4
scaffold_14	starts_in_intron	9994404	9994404	+	asmbl_12306,asmbl_12309	none	STRG.17369.3,blat.proc3825172.chain_2120,blat.proc3825172.chain_2121	3	blat.proc3825172.chain_2123	1
scaffold_9	skipped_exon	3674467	3676841	-	asmbl_54921,asmbl_54927,asmbl_54928	none	STRG.10993.1,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	5	STRG.10993.4,STRG.10993.5	2
scaffold_23	spliced_intron	1739076	1739233	+	asmbl_31352,asmbl_31353,asmbl_31355	none	blat.proc3825176.chain_2570,blat.proc3825176.chain_2571,blat.proc3825176.chain_2572	3	blat.proc3825176.chain_2573	1
scaffold_24	alt_acceptor	2786682	2786683	-	asmbl_32802	none	STRG.26487.1,blat.proc3825160.chain_3619	2	STRG.26487.2,Trinity_GG_14816_c0_g1_i3,blat.proc3825160.chain_3618	3
scaffold_3	retained_intron	10937352	10937449	-	asmbl_39121,asmbl_39123	none	STRG.3545.1,STRG.3545.4,blat.proc3825148.chain_3371	3	STRG.3545.2,blat.proc3825148.chain_3370	2
scaffold_2	retained_intron	13403876	13404166	-	asmbl_23514	none	STRG.2366.2,blat.proc3825148.chain_2317,blat.proc3825148.chain_2319	3	STRG.2366.1,blat.proc3825148.chain_2318	2
scaffold_13	retained_intron	6396903	6397368	+	asmbl_10927	none	Trinity_GG_26055_c0_g1_i2,blat.proc3825172.chain_653	2	STRG.15929.1,STRG.15929.4,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	5
scaffold_19	ends_in_intron	3188346	3188346	-	asmbl_22092,asmbl_22094	none	STRG.22011.3,STRG.22011.4,blat.proc3825158.chain_2844	3	STRG.22011.1,blat.proc3825158.chain_2843,blat.proc3825158.chain_2845	3
scaffold_19	starts_in_intron	13173214	13173214	+	asmbl_21866	none	Trinity_GG_29797_c0_g1_i3,blat.proc3825174.chain_3602	2	STRG.22641.1,blat.proc3825174.chain_3605	2
scaffold_10	alt_donor	5259102	5259103	-	asmbl_4351	none	STRG.12356.3,blat.proc3825154.chain_919	2	STRG.12356.2	1
scaffold_24	spliced_intron	1452902	1452990	+	asmbl_32079	none	STRG.26401.1	1	STRG.26401.2,Trinity_GG_31891_c1_g1_i2,blat.proc3825176.chain_3350	3
scaffold_17	spliced_intron	9007049	9007385	+	asmbl_19055,asmbl_19058	none	STRG.20525.1,blat.proc3825174.chain_1320,blat.proc3825174.chain_1322	3	blat.proc3825174.chain_1323	1
scaffold_9	retained_intron	11843256	11843422	-	asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55332	none	blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	4	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660	5
scaffold_9	skipped_exon	3374363	3374990	+	asmbl_53892	none	STRG.10943.1,blat.proc3825168.chain_3420	2	blat.proc3825168.chain_3418,blat.proc3825168.chain_3419	2
scaffold_20	starts_in_intron	8023896	8023896	-	asmbl_25959	none	blat.proc3825160.chain_475	1	STRG.23354.1,blat.proc3825160.chain_476	2
scaffold_13	alt_donor	6140004	6140005	-	asmbl_9773	none	STRG.15919.3,Trinity_GG_8952_c0_g1_i1,blat.proc3825156.chain_808	3	STRG.15919.2	1
scaffold_25	retained_exon	5827725	5827769	-	asmbl_34289,asmbl_34292	none	STRG.27479.3,blat.proc3825162.chain_878	2	blat.proc3825162.chain_879,blat.proc3825162.chain_880	2
scaffold_13	starts_in_intron	2859033	2859033	-	asmbl_9483	none	blat.proc3825156.chain_477	1	STRG.15589.1,blat.proc3825156.chain_476,blat.proc3825156.chain_478,blat.proc3825156.chain_479	4
scaffold_27	skipped_exon	1774540	1775914	+	asmbl_36037,asmbl_36039	none	Trinity_GG_33182_c0_g1_i1,Trinity_GG_33182_c0_g1_i2	2	STRG.28669.1	1
scaffold_2	alt_donor	10646914	10646915	-	asmbl_23432	none	STRG.2226.2	1	STRG.2226.1	1
scaffold_16	starts_in_intron	8041886	8041886	+	asmbl_16372	none	Trinity_GG_27912_c0_g1_i2,blat.proc3825174.chain_276	2	STRG.19448.1,STRG.19448.2,Trinity_GG_27912_c0_g1_i5,blat.proc3825174.chain_277,blat.proc3825174.chain_278	5
scaffold_28	alt_acceptor	7831986	7831987	-	asmbl_38421	none	STRG.29854.1,blat.proc3825162.chain_3044	2	STRG.29854.2,blat.proc3825162.chain_3043	2
scaffold_27	spliced_intron	4961885	4961915	+	asmbl_36332	none	STRG.28931.1	1	Trinity_GG_33328_c0_g1_i1	1
scaffold_7	alternate_exon	6623591	6624504	+	asmbl_49869	none	STRG.8935.4,Trinity_GG_22249_c1_g1_i1,blat.proc3825168.chain_1433	3	STRG.8935.1,STRG.8935.2,Trinity_GG_22249_c0_g1_i1,blat.proc3825168.chain_1432	4
scaffold_23	starts_in_intron	4454861	4454861	+	asmbl_31510	none	Trinity_GG_31568_c0_g1_i1,blat.proc3825176.chain_2783	2	STRG.25860.1,Trinity_GG_31568_c0_g1_i2,blat.proc3825176.chain_2784	3
scaffold_6	ends_in_intron	8741702	8741702	+	asmbl_47175	none	STRG.7756.1	1	blat.proc3825168.chain_186	1
scaffold_17	retained_exon	8542325	8542348	+	asmbl_18992,asmbl_18993	none	STRG.20467.1,STRG.20467.2,blat.proc3825174.chain_1315	3	blat.proc3825174.chain_1316	1
scaffold_4	alt_acceptor	16317887	16317888	+	asmbl_41961,asmbl_41962,asmbl_41963,asmbl_41964	none	STRG.5200.1,STRG.5200.2,STRG.5200.3,blat.proc3825166.chain_1499,blat.proc3825166.chain_1501	5	STRG.5200.4	1
scaffold_28	starts_in_intron	4876414	4876414	-	asmbl_38228	none	STRG.29645.3,Trinity_GG_16590_c0_g1_i2,blat.proc3825162.chain_2763	3	STRG.29645.1,Trinity_GG_16590_c0_g1_i4,blat.proc3825162.chain_2765	3
scaffold_11	ends_in_intron	14499025	14499025	-	asmbl_7169	none	STRG.14249.2,blat.proc3825154.chain_2786	2	STRG.14249.1,blat.proc3825154.chain_2787	2
scaffold_5	retained_intron	108645	109025	-	asmbl_43753	none	Trinity_GG_3150_c0_g1_i2	1	STRG.5574.1,STRG.5574.2	2
scaffold_22	skipped_exon	9719199	9721961	+	asmbl_30316	none	STRG.25308.2	1	STRG.25308.1,STRG.25308.3,STRG.25308.4,blat.proc3825176.chain_2309	4
scaffold_18	starts_in_intron	9635252	9635252	-	asmbl_20064,asmbl_20067,asmbl_20068	none	STRG.21576.2,Trinity_GG_12059_c0_g1_i5,blat.proc3825158.chain_2481,blat.proc3825158.chain_2483	4	blat.proc3825158.chain_2480	1
scaffold_6	alt_acceptor	12534635	12534636	-	asmbl_48821	none	STRG.8010.2,blat.proc3825152.chain_399	2	STRG.8010.1,STRG.8010.3,blat.proc3825152.chain_400	3
scaffold_1	ends_in_intron	18095650	18095650	-	asmbl_1092	none	Trinity_GG_690_c0_g1_i1,blat.proc3825148.chain_1282	2	STRG.1274.1	1
scaffold_14	retained_exon	15585637	15585898	+	asmbl_12628	none	STRG.17811.3,blat.proc3825172.chain_2554	2	STRG.17811.2,STRG.17811.7	2
scaffold_12	spliced_intron	6542586	6543063	+	asmbl_7698,asmbl_7699	none	STRG.14758.1,STRG.14758.3,Trinity_GG_25435_c0_g1_i1,blat.proc3825170.chain_3247	4	Trinity_GG_25435_c0_g1_i2,blat.proc3825170.chain_3248	2
scaffold_10	spliced_intron	5866632	5866731	-	asmbl_4402	none	STRG.12407.2,Trinity_GG_6925_c0_g1_i1,blat.proc3825154.chain_967	3	STRG.12407.1,blat.proc3825154.chain_966	2
scaffold_10	starts_in_intron	9061187	9061187	-	asmbl_4670	none	blat.proc3825154.chain_1204	1	STRG.12655.1,STRG.12655.2,blat.proc3825154.chain_1198,blat.proc3825154.chain_1199,blat.proc3825154.chain_1202	5
scaffold_19	alt_acceptor	595653	595654	+	asmbl_21188	none	STRG.21841.1,blat.proc3825174.chain_2888,blat.proc3825174.chain_2889	3	blat.proc3825174.chain_2887	1
scaffold_3	ends_in_intron	13424982	13424982	-	asmbl_39261	none	Trinity_GG_2033_c1_g1_i1,blat.proc3825148.chain_3591	2	STRG.3693.4	1
scaffold_14	retained_exon	14147748	14147954	+	asmbl_12523,asmbl_12527	none	STRG.17687.2,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	3	STRG.17687.1	1
scaffold_18	spliced_intron	8883548	8883630	-	asmbl_20034,asmbl_20039	none	STRG.21551.3,STRG.21551.4,Trinity_GG_12055_c0_g1_i3,blat.proc3825158.chain_2469	4	STRG.21551.5,Trinity_GG_12055_c0_g1_i2,blat.proc3825158.chain_2470	3
scaffold_12	spliced_intron	1066676	1067984	-	asmbl_8288	none	STRG.14451.1,blat.proc3825154.chain_2966	2	STRG.14451.2,Trinity_GG_8066_c0_g1_i2,blat.proc3825154.chain_2967,blat.proc3825154.chain_2968	4
scaffold_11	starts_in_intron	13576508	13576508	-	asmbl_7143	none	blat.proc3825154.chain_2697	1	STRG.14217.1,STRG.14217.2,STRG.14217.3,blat.proc3825154.chain_2696,blat.proc3825154.chain_2698,blat.proc3825154.chain_2699	6
scaffold_9	spliced_intron	7796656	7797444	+	asmbl_54133,asmbl_54134,asmbl_54141	none	STRG.11230.1,blat.proc3825170.chain_75,blat.proc3825170.chain_76,blat.proc3825170.chain_77	4	blat.proc3825170.chain_70,blat.proc3825170.chain_71,blat.proc3825170.chain_72,blat.proc3825170.chain_74	4
scaffold_10	alt_donor	549382	549383	-	asmbl_3962,asmbl_3964	none	STRG.11936.1,STRG.11936.2,Trinity_GG_6600_c0_g1_i5,blat.proc3825154.chain_401,blat.proc3825154.chain_403	5	STRG.11936.3,Trinity_GG_6600_c0_g1_i3,blat.proc3825154.chain_402	3
scaffold_22	spliced_intron	4345965	4346077	+	asmbl_29981	none	STRG.24852.3,blat.proc3825176.chain_1949	2	STRG.24852.2,blat.proc3825176.chain_1947	2
scaffold_7	retained_intron	18619948	18620034	-	asmbl_51484,asmbl_51485,asmbl_51487,asmbl_51490	none	STRG.9681.4,STRG.9681.5,blat.proc3825152.chain_2028,blat.proc3825152.chain_2029	4	STRG.9681.1,STRG.9681.2,blat.proc3825152.chain_2027	3
scaffold_7	ends_in_intron	15652009	15652009	+	asmbl_50460	none	blat.proc3825168.chain_2088	1	STRG.9559.1,STRG.9559.2,STRG.9559.3,STRG.9559.4,blat.proc3825168.chain_2089,blat.proc3825168.chain_2090,blat.proc3825168.chain_2091,blat.proc3825168.chain_2092	8
scaffold_1	alt_donor	20132580	20132581	+	asmbl_2608	none	STRG.1380.1,Trinity_GG_18065_c0_g1_i1,blat.proc3825164.chain_1417	3	blat.proc3825164.chain_1420	1
scaffold_5	spliced_intron	19440530	19440725	+	asmbl_46319	none	STRG.7040.1,Trinity_GG_21175_c0_g1_i4,blat.proc3825166.chain_3233	3	Trinity_GG_21175_c0_g1_i1,blat.proc3825166.chain_3234	2
scaffold_16	alternate_exon	146167	154866	-	asmbl_16834,asmbl_16841	none	STRG.19010.1,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i8	3	Trinity_GG_10685_c0_g1_i9	1
scaffold_1	retained_intron	5731015	5731118	-	asmbl_293	none	blat.proc3825148.chain_360	1	STRG.388.1,STRG.388.2,blat.proc3825148.chain_359,blat.proc3825148.chain_361	4
scaffold_13	retained_intron	8831597	8831757	-	asmbl_9991,asmbl_9993	none	Trinity_GG_9044_c0_g1_i2,Trinity_GG_9044_c0_g1_i3,blat.proc3825156.chain_996,blat.proc3825156.chain_999	4	STRG.16159.1,blat.proc3825156.chain_998	2
scaffold_2	spliced_intron	11610034	11611257	+	asmbl_24761,asmbl_24765	none	STRG.2268.3,blat.proc3825164.chain_2377	2	STRG.2268.1,blat.proc3825164.chain_2376,blat.proc3825164.chain_2379,blat.proc3825164.chain_2381,blat.proc3825164.chain_2382	5
scaffold_13	retained_intron	2271214	2271358	-	asmbl_9437,asmbl_9438,asmbl_9441,asmbl_9442,asmbl_9443,asmbl_9445	none	STRG.15548.3,STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_395,blat.proc3825156.chain_400	11	STRG.15548.1,STRG.15548.2,STRG.15548.5,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_397,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9
scaffold_14	alt_acceptor	3142266	3142267	+	asmbl_11905	none	Trinity_GG_26603_c0_g1_i3,blat.proc3825172.chain_1671	2	STRG.16905.1,Trinity_GG_26603_c0_g1_i2,blat.proc3825172.chain_1672	3
scaffold_5	alt_donor	8069330	8069331	+	asmbl_45522	none	STRG.6170.3	1	STRG.6170.1,STRG.6170.2,blat.proc3825166.chain_2347	3
scaffold_8	starts_in_intron	16488055	16488055	-	asmbl_52401	none	blat.proc3825152.chain_2877	1	STRG.10627.1,blat.proc3825152.chain_2878	2
scaffold_8	retained_intron	11279257	11280686	-	asmbl_52146,asmbl_52148	none	STRG.10347.1,STRG.10347.2,blat.proc3825152.chain_2593	3	STRG.10347.3,blat.proc3825152.chain_2594,blat.proc3825152.chain_2596	3
scaffold_2	skipped_exon	486166	488771	-	asmbl_22806	none	STRG.1532.2	1	STRG.1532.1,STRG.1532.3,blat.proc3825148.chain_1467,blat.proc3825148.chain_1468	4
scaffold_8	spliced_intron	9466054	9466151	-	asmbl_52035,asmbl_52036,asmbl_52037,asmbl_52039	none	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5	Trinity_GG_5708_c0_g1_i2,blat.proc3825152.chain_2502	2
scaffold_4	spliced_intron	13762015	13762163	-	asmbl_43003,asmbl_43004,asmbl_43005,asmbl_43007	none	STRG.4997.1,STRG.4997.2,STRG.4997.3,blat.proc3825150.chain_1141,blat.proc3825150.chain_1143,blat.proc3825150.chain_1144	6	blat.proc3825150.chain_1142	1
scaffold_1	skipped_exon	7283528	7284758	-	asmbl_424	none	STRG.519.1,blat.proc3825148.chain_447	2	STRG.519.2,blat.proc3825148.chain_446	2
scaffold_23	alt_donor	4449914	4449915	-	asmbl_30865	none	STRG.25862.4,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3004	3	STRG.25862.1,STRG.25862.3,STRG.25862.5,Trinity_GG_14447_c0_g1_i1,Trinity_GG_14447_c0_g1_i2,blat.proc3825160.chain_3002,blat.proc3825160.chain_3005	7
scaffold_7	ends_in_intron	717504	717504	-	asmbl_50694	none	Trinity_GG_4928_c0_g1_i4,blat.proc3825152.chain_1091	2	STRG.8610.1,blat.proc3825152.chain_1090,blat.proc3825152.chain_1092	3
scaffold_6	retained_intron	12480315	12482223	+	asmbl_47397	none	STRG.8006.3,Trinity_GG_21705_c0_g1_i2,Trinity_GG_21705_c1_g1_i1,blat.proc3825168.chain_476,blat.proc3825168.chain_478	5	STRG.8006.1,STRG.8006.2,STRG.8006.4,blat.proc3825168.chain_473,blat.proc3825168.chain_474,blat.proc3825168.chain_475,blat.proc3825168.chain_477	7
scaffold_3	alternate_exon	2968391	2968433	-	asmbl_38750	none	STRG.3052.2	1	STRG.3052.1,blat.proc3825148.chain_2918	2
scaffold_15	starts_in_intron	12792019	12792019	+	asmbl_15609	none	Trinity_GG_27600_c0_g1_i1,blat.proc3825172.chain_3396	2	STRG.18738.1,Trinity_GG_27600_c0_g1_i2,blat.proc3825172.chain_3397	3
scaffold_14	spliced_intron	11685485	11685674	-	asmbl_13521,asmbl_13522,asmbl_13523,asmbl_13525	none	STRG.17516.1,STRG.17516.2,STRG.17516.3,blat.proc3825156.chain_2313,blat.proc3825156.chain_2314,blat.proc3825156.chain_2316	6	Trinity_GG_9810_c1_g1_i1,blat.proc3825156.chain_2317	2
scaffold_8	skipped_exon	12690007	12691737	+	asmbl_53326,asmbl_53327,asmbl_53328	none	STRG.10446.1,blat.proc3825168.chain_3008,blat.proc3825168.chain_3009	3	STRG.10446.2,blat.proc3825168.chain_3007	2
scaffold_1	alt_donor	12585455	12585456	+	asmbl_2237	none	STRG.877.2	1	STRG.877.1	1
scaffold_16	retained_exon	14189380	14189394	-	asmbl_17439,asmbl_17440	none	STRG.19820.1,STRG.19820.3,blat.proc3825158.chain_848	3	STRG.19820.2,blat.proc3825158.chain_849	2
scaffold_8	retained_exon	11298141	11298291	+	asmbl_53214,asmbl_53215	none	STRG.10343.1,STRG.10343.3,Trinity_GG_23079_c0_g1_i3,blat.proc3825168.chain_2926	4	Trinity_GG_23079_c0_g1_i4,blat.proc3825168.chain_2925	2
scaffold_2	starts_in_intron	10688220	10688220	+	asmbl_24720	none	Trinity_GG_18569_c0_g1_i2,blat.proc3825164.chain_2419	2	STRG.2236.1,STRG.2236.2,Trinity_GG_18569_c0_g1_i1,Trinity_GG_18569_c0_g1_i3,blat.proc3825164.chain_2420,blat.proc3825164.chain_2421	6
scaffold_5	retained_intron	4696342	4696551	+	asmbl_45287	none	STRG.5925.1	1	blat.proc3825166.chain_2150	1
scaffold_24	retained_intron	7864239	7864383	-	asmbl_33073	none	STRG.26842.1,blat.proc3825162.chain_223	2	STRG.26842.2,blat.proc3825162.chain_225	2
scaffold_27	spliced_intron	9968387	9968472	+	asmbl_36553	none	STRG.29227.2,blat.proc3825178.chain_2435	2	STRG.29227.1,STRG.29227.3,blat.proc3825178.chain_2436	3
scaffold_14	alt_acceptor	8291984	8291985	-	asmbl_13279	none	STRG.17253.2,blat.proc3825156.chain_2074	2	STRG.17253.1	1
scaffold_11	ends_in_intron	5493835	5493835	-	asmbl_6663	none	Trinity_GG_7575_c1_g1_i1,blat.proc3825154.chain_2103	2	STRG.13618.1,blat.proc3825154.chain_2102	2
scaffold_25	retained_intron	6324446	6324641	-	asmbl_34361,asmbl_34362	none	blat.proc3825162.chain_939,blat.proc3825162.chain_941	2	STRG.27519.1,STRG.27519.2,blat.proc3825162.chain_938,blat.proc3825162.chain_940,blat.proc3825162.chain_942,blat.proc3825162.chain_943	6
scaffold_8	spliced_intron	9811870	9812023	+	asmbl_53108	none	STRG.10225.2,blat.proc3825168.chain_2789	2	STRG.10225.1,Trinity_GG_23000_c1_g1_i2	2
scaffold_18	starts_in_intron	3608011	3608011	+	asmbl_20460	none	Trinity_GG_28967_c0_g1_i2,blat.proc3825174.chain_2118	2	STRG.21178.2	1
scaffold_21	alt_acceptor	8970188	8970189	-	asmbl_27947,asmbl_27948	none	STRG.24409.3,blat.proc3825160.chain_1567,blat.proc3825160.chain_1569	3	STRG.24409.1,STRG.24409.2,blat.proc3825160.chain_1566,blat.proc3825160.chain_1568	4
scaffold_15	retained_intron	9873560	9873882	+	asmbl_15430	none	blat.proc3825172.chain_3109	1	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3108,blat.proc3825172.chain_3110	4
scaffold_13	alt_acceptor	5208651	5208652	+	asmbl_10832	none	STRG.15826.2	1	STRG.15826.1,Trinity_GG_26004_c0_g1_i1,blat.proc3825172.chain_551	3
scaffold_19	alt_donor	10637222	10637223	-	asmbl_22351	none	STRG.22413.2	1	STRG.22413.1,blat.proc3825158.chain_3119	2
scaffold_2	retained_intron	3631902	3632007	+	asmbl_24293	none	STRG.1787.3	1	STRG.1787.1,STRG.1787.2,Trinity_GG_18311_c0_g1_i6,blat.proc3825164.chain_1919	4
scaffold_14	spliced_intron	15346342	15346877	-	asmbl_13711,asmbl_13715,asmbl_13716	none	STRG.17765.1,Trinity_GG_9998_c0_g1_i4,blat.proc3825156.chain_2605,blat.proc3825156.chain_2607,blat.proc3825156.chain_2608	5	STRG.17765.2,Trinity_GG_9998_c0_g1_i3,blat.proc3825156.chain_2606	3
scaffold_28	retained_intron	5228162	5228266	-	asmbl_38258	none	blat.proc3825162.chain_2844	1	STRG.29674.1,blat.proc3825162.chain_2846,blat.proc3825162.chain_2848	3
scaffold_10	alt_acceptor	3129132	3129133	-	asmbl_4168	none	STRG.12138.3	1	STRG.12138.1,Trinity_GG_6767_c0_g1_i3,blat.proc3825154.chain_701	3
scaffold_19	alt_acceptor	2780919	2780920	+	asmbl_21278	none	STRG.21962.2	1	STRG.21962.3,STRG.21962.4	2
scaffold_19	retained_intron	13010263	13010705	-	asmbl_22580	none	Trinity_GG_12599_c0_g1_i4,blat.proc3825158.chain_3454	2	STRG.22624.1,STRG.22624.2,blat.proc3825158.chain_3455,blat.proc3825158.chain_3456,blat.proc3825158.chain_3457	5
scaffold_23	retained_exon	3233592	3233764	-	asmbl_30787	none	STRG.25755.1,blat.proc3825160.chain_2917	2	STRG.25755.3	1
scaffold_22	retained_intron	744120	744573	-	asmbl_29128	none	blat.proc3825160.chain_1924	1	STRG.24730.1,blat.proc3825160.chain_1923,blat.proc3825160.chain_1926	3
scaffold_4	alternate_exon	247166	247934	+	asmbl_41091	none	Trinity_GG_19610_c0_g1_i1,blat.proc3825166.chain_586	2	STRG.4120.2	1
scaffold_4	alt_acceptor	3269998	3269999	+	asmbl_41162,asmbl_41164,asmbl_41165	none	STRG.4255.1,blat.proc3825166.chain_626,blat.proc3825166.chain_627,blat.proc3825166.chain_628	4	STRG.4255.2,blat.proc3825166.chain_625	2
scaffold_20	ends_in_intron	9106826	9106826	+	asmbl_26831	none	STRG.23455.2	1	STRG.23455.1,Trinity_GG_30271_c0_g1_i1,Trinity_GG_30271_c0_g1_i2,Trinity_GG_30271_c0_g1_i3,blat.proc3825176.chain_612,blat.proc3825176.chain_613,blat.proc3825176.chain_615	7
scaffold_15	starts_in_intron	182360	182360	+	asmbl_14954	none	Trinity_GG_27137_c3_g1_i1	1	STRG.17881.1,STRG.17881.2	2
scaffold_6	retained_intron	12087982	12088116	-	asmbl_48792,asmbl_48795	none	STRG.7983.1,Trinity_GG_4529_c0_g1_i1,blat.proc3825152.chain_367	3	STRG.7983.2,blat.proc3825152.chain_366	2
scaffold_3	alt_donor	3271369	3271370	-	asmbl_38764,asmbl_38765,asmbl_38766	none	STRG.3073.3,blat.proc3825148.chain_2950,blat.proc3825148.chain_2951	3	STRG.3073.1,blat.proc3825148.chain_2952,blat.proc3825148.chain_2954	3
scaffold_16	alt_acceptor	1110365	1110366	-	asmbl_16923	none	STRG.19075.1	1	STRG.19075.2	1
scaffold_11	starts_in_intron	8180091	8180091	-	asmbl_6849	none	Trinity_GG_7745_c0_g1_i2,blat.proc3825154.chain_2399	2	STRG.13825.1,Trinity_GG_7745_c0_g1_i1,blat.proc3825154.chain_2398	3
scaffold_4	retained_exon	18793443	18794717	+	asmbl_42109	none	STRG.5471.1,blat.proc3825166.chain_1795	2	STRG.5471.4	1
scaffold_14	ends_in_intron	8612216	8612216	-	asmbl_13331	none	Trinity_GG_9707_c0_g1_i3,blat.proc3825156.chain_2121	2	STRG.17296.1,STRG.17296.2,blat.proc3825156.chain_2120,blat.proc3825156.chain_2122	4
scaffold_14	alternate_exon	9299976	9305806	-	asmbl_13370,asmbl_13371,asmbl_13373,asmbl_13375	none	STRG.17341.1,STRG.17341.3,blat.proc3825156.chain_2167,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2172,blat.proc3825156.chain_2176	7	STRG.17341.2,STRG.17341.4,blat.proc3825156.chain_2166,blat.proc3825156.chain_2168,blat.proc3825156.chain_2171,blat.proc3825156.chain_2174	6
scaffold_4	retained_intron	15689788	15689823	-	asmbl_43116	none	STRG.5156.2	1	STRG.5156.1	1
scaffold_7	alt_acceptor	8175494	8175495	+	asmbl_49957	none	STRG.9049.3,Trinity_GG_22317_c0_g2_i2,blat.proc3825168.chain_1533	3	STRG.9049.1,STRG.9049.2,blat.proc3825168.chain_1534,blat.proc3825168.chain_1535	4
scaffold_9	starts_in_intron	6880549	6880549	+	asmbl_54110	none	Trinity_GG_23560_c0_g1_i2,blat.proc3825168.chain_3744	2	STRG.11200.1,blat.proc3825168.chain_3743	2
scaffold_6	spliced_intron	8580963	8581085	+	asmbl_47152,asmbl_47153	none	STRG.7738.2,STRG.7738.3	2	STRG.7738.1,blat.proc3825168.chain_179,blat.proc3825168.chain_181	3
scaffold_1	spliced_intron	922856	922976	+	asmbl_1444	none	STRG.49.4,blat.proc3825164.chain_87	2	Trinity_GG_17320_c0_g1_i5,blat.proc3825164.chain_82	2
scaffold_3	retained_intron	6871188	6871289	+	asmbl_40143	none	STRG.3311.1,blat.proc3825164.chain_3513	2	STRG.3311.2	1
scaffold_3	alt_donor	14217595	14217596	-	asmbl_39341	none	STRG.3758.1	1	STRG.3758.2	1
scaffold_10	ends_in_intron	13281566	13281566	-	asmbl_4869	none	blat.proc3825154.chain_1548	1	STRG.12922.1,STRG.12922.2,STRG.12922.3,STRG.12922.4,blat.proc3825154.chain_1550	5
scaffold_7	ends_in_intron	5344147	5344147	-	asmbl_50883	none	STRG.8873.3,blat.proc3825152.chain_1319	2	STRG.8873.2	1
scaffold_12	retained_intron	10384453	10384526	+	asmbl_7922	none	blat.proc3825170.chain_3575	1	STRG.15014.1,blat.proc3825170.chain_3574	2
scaffold_17	alternate_exon	11036215	11039046	-	asmbl_18260	none	STRG.20664.4,blat.proc3825158.chain_1639,blat.proc3825158.chain_1651	3	STRG.20664.3	1
scaffold_20	starts_in_intron	7208849	7208849	+	asmbl_26711	none	STRG.23290.2	1	STRG.23290.1,Trinity_GG_30160_c0_g1_i1,blat.proc3825176.chain_453,blat.proc3825176.chain_454	4
scaffold_13	alt_donor	520305	520306	+	asmbl_10488,asmbl_10492,asmbl_10493	none	STRG.15449.4,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_184,blat.proc3825172.chain_186	4	STRG.15449.1,STRG.15449.2,STRG.15449.3,STRG.15449.5,Trinity_GG_25810_c0_g1_i15,Trinity_GG_25810_c0_g1_i5,blat.proc3825172.chain_179,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_185,blat.proc3825172.chain_188	12
scaffold_5	alternate_exon	3591749	3591944	-	asmbl_43924	none	STRG.5831.1	1	STRG.5831.2,STRG.5831.3,STRG.5831.4,blat.proc3825150.chain_2044,blat.proc3825150.chain_2046	5
scaffold_6	skipped_exon	8172579	8172828	-	asmbl_48538,asmbl_48543,asmbl_48544,asmbl_48545	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_91,blat.proc3825152.chain_92	5	blat.proc3825152.chain_93	1
scaffold_23	retained_intron	1458422	1458455	+	asmbl_31326	none	STRG.25621.1,blat.proc3825176.chain_2579	2	blat.proc3825176.chain_2580	1
scaffold_16	starts_in_intron	152656	152656	-	asmbl_16833,asmbl_16840	none	blat.proc3825158.chain_147,blat.proc3825158.chain_148	2	STRG.19010.1,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i8	3
scaffold_2	alt_acceptor	9262356	9262357	-	asmbl_23371,asmbl_23372	none	STRG.2169.1,STRG.2169.2,blat.proc3825148.chain_2191,blat.proc3825148.chain_2192	4	STRG.2169.3	1
scaffold_8	retained_intron	6714778	6715271	+	asmbl_52967	none	STRG.10042.1,Trinity_GG_22865_c0_g1_i2,blat.proc3825168.chain_2549	3	STRG.10042.2,Trinity_GG_22865_c0_g1_i1,blat.proc3825168.chain_2548	3
scaffold_11	alternate_exon	13382869	13383141	+	asmbl_6055	none	STRG.14203.3	1	STRG.14203.1,STRG.14203.2,blat.proc3825170.chain_2760,blat.proc3825170.chain_2761	4
scaffold_27	spliced_intron	1419227	1419252	+	asmbl_36003,asmbl_36005	none	STRG.28637.1,STRG.28637.2	2	STRG.28637.3,Trinity_GG_33168_c0_g1_i2	2
scaffold_3	alternate_exon	1767181	1768921	+	asmbl_39883	none	STRG.2994.1	1	STRG.2994.2,STRG.2994.3,Trinity_GG_19006_c0_g1_i5,blat.proc3825164.chain_3227	4
scaffold_11	retained_intron	262237	262334	-	asmbl_6391	none	blat.proc3825154.chain_1851	1	STRG.13270.1,blat.proc3825154.chain_1850,blat.proc3825154.chain_1852	3
scaffold_3	retained_intron	6661802	6662072	+	asmbl_40117	none	STRG.3296.2,Trinity_GG_19179_c1_g2_i1,blat.proc3825164.chain_3554	3	STRG.3296.1	1
scaffold_8	starts_in_intron	5686220	5686220	+	asmbl_52891	none	Trinity_GG_22811_c0_g1_i1,blat.proc3825168.chain_2433	2	STRG.9981.1	1
scaffold_16	skipped_exon	7235994	7236929	-	asmbl_17170,asmbl_17177	none	STRG.19399.3,STRG.19399.5,blat.proc3825158.chain_476	3	STRG.19399.1,STRG.19399.2,STRG.19399.4	3
scaffold_25	starts_in_intron	1433450	1433450	-	asmbl_34034	none	blat.proc3825162.chain_544	1	STRG.27177.1,blat.proc3825162.chain_545	2
scaffold_17	ends_in_intron	1055357	1055357	-	asmbl_17669	none	STRG.19948.5,blat.proc3825158.chain_934	2	STRG.19948.3,STRG.19948.4,blat.proc3825158.chain_932	3
scaffold_12	alt_donor	13403360	13403361	-	asmbl_8946	none	Trinity_GG_8526_c0_g1_i2,blat.proc3825156.chain_11	2	STRG.15219.5,blat.proc3825156.chain_12	2
scaffold_13	alt_acceptor	520419	520420	+	asmbl_10485,asmbl_10486,asmbl_10487,asmbl_10488,asmbl_10489,asmbl_10490,asmbl_10492,asmbl_10493	none	STRG.15449.1,STRG.15449.2,STRG.15449.3,STRG.15449.4,Trinity_GG_25810_c0_g1_i15,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_179,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_184,blat.proc3825172.chain_185,blat.proc3825172.chain_186,blat.proc3825172.chain_188	13	STRG.15449.5,Trinity_GG_25810_c0_g1_i5,blat.proc3825172.chain_180	3
scaffold_7	retained_exon	18784049	18784164	+	asmbl_50532,asmbl_50533	none	STRG.9696.2,STRG.9696.4	2	STRG.9696.3	1
scaffold_24	starts_in_intron	6445150	6445150	+	asmbl_32309	none	Trinity_GG_32056_c0_g1_i14,blat.proc3825176.chain_3616	2	STRG.26699.1,STRG.26699.2,blat.proc3825176.chain_3610,blat.proc3825176.chain_3613,blat.proc3825176.chain_3617,blat.proc3825176.chain_3618	6
scaffold_19	spliced_intron	13010845	13011231	-	asmbl_22581,asmbl_22583	none	STRG.22624.1,blat.proc3825158.chain_3455,blat.proc3825158.chain_3456	3	STRG.22624.2,Trinity_GG_12599_c0_g1_i4,blat.proc3825158.chain_3454,blat.proc3825158.chain_3457	4
scaffold_13	alt_donor	6433899	6433900	-	asmbl_9795	none	STRG.15943.2	1	STRG.15943.1,blat.proc3825156.chain_845,blat.proc3825156.chain_847,blat.proc3825156.chain_850	4
scaffold_23	alt_acceptor	5156919	5156920	-	asmbl_30885	none	STRG.25895.2,Trinity_GG_14483_c0_g1_i1,blat.proc3825160.chain_3052	3	STRG.25895.1	1
scaffold_10	starts_in_intron	9059574	9059574	-	asmbl_4669	none	blat.proc3825154.chain_1205	1	STRG.12655.1,STRG.12655.2,STRG.12655.3,blat.proc3825154.chain_1198,blat.proc3825154.chain_1199,blat.proc3825154.chain_1202,blat.proc3825154.chain_1203,blat.proc3825154.chain_1204	8
scaffold_13	retained_intron	7216462	7216557	+	asmbl_11023	none	blat.proc3825172.chain_811	1	STRG.16019.1,blat.proc3825172.chain_809,blat.proc3825172.chain_810,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_814,blat.proc3825172.chain_815,blat.proc3825172.chain_816	8
scaffold_3	starts_in_intron	6185794	6185794	-	asmbl_38913	none	blat.proc3825148.chain_3122	1	STRG.3266.1,STRG.3266.2,STRG.3266.4,STRG.3266.5,blat.proc3825148.chain_3119,blat.proc3825148.chain_3120,blat.proc3825148.chain_3121,blat.proc3825148.chain_3123,blat.proc3825148.chain_3124,blat.proc3825148.chain_3125	10
scaffold_10	spliced_intron	378745	378845	-	asmbl_3947	none	STRG.11922.1,blat.proc3825154.chain_461	2	STRG.11922.2,STRG.11922.3,Trinity_GG_6631_c0_g1_i7,blat.proc3825154.chain_458	4
scaffold_12	retained_intron	9687346	9687437	-	asmbl_8690	none	Trinity_GG_8342_c0_g1_i2,blat.proc3825154.chain_3466	2	STRG.14946.1,STRG.14946.3,blat.proc3825154.chain_3467	3
scaffold_10	spliced_intron	4659	4886	+	asmbl_2841	none	STRG.11903.1,blat.proc3825170.chain_674	2	STRG.11903.2,Trinity_GG_23939_c0_g1_i1,blat.proc3825170.chain_675	3
scaffold_14	starts_in_intron	10683925	10683925	-	asmbl_13436,asmbl_13437	none	blat.proc3825156.chain_2254	1	STRG.17420.1,blat.proc3825156.chain_2253	2
scaffold_6	ends_in_intron	8305434	8305434	+	asmbl_47121	none	blat.proc3825168.chain_137	1	STRG.7711.1,blat.proc3825168.chain_138	2
scaffold_16	spliced_intron	14510973	14511105	-	asmbl_17447,asmbl_17448,asmbl_17449	none	STRG.19830.1,blat.proc3825158.chain_874,blat.proc3825158.chain_875,blat.proc3825158.chain_877	4	Trinity_GG_11122_c0_g1_i3,blat.proc3825158.chain_878	2
scaffold_8	starts_in_intron	16219132	16219132	+	asmbl_53432	none	STRG.10608.1	1	Trinity_GG_23201_c0_g1_i1,blat.proc3825168.chain_3132	2
scaffold_8	alternate_exon	17974809	17974946	-	asmbl_52498	none	STRG.10702.2	1	STRG.10702.3	1
scaffold_28	spliced_intron	295738	295857	+	asmbl_37267,asmbl_37268,asmbl_37269,asmbl_37270,asmbl_37271	none	STRG.29263.1,STRG.29263.2,STRG.29263.3,blat.proc3825178.chain_2488,blat.proc3825178.chain_2489,blat.proc3825178.chain_2490,blat.proc3825178.chain_2492	7	blat.proc3825178.chain_2491	1
scaffold_5	spliced_intron	15463089	15463201	-	asmbl_44675,asmbl_44678	none	STRG.6732.1,blat.proc3825150.chain_2873,blat.proc3825150.chain_2874	3	STRG.6732.2	1
scaffold_19	retained_intron	7466932	7467251	+	asmbl_21458	none	STRG.22222.1,blat.proc3825174.chain_3215	2	Trinity_GG_29583_c0_g1_i3,blat.proc3825174.chain_3214	2
scaffold_2	ends_in_intron	3898542	3898542	+	asmbl_24318	none	Trinity_GG_18352_c1_g1_i1,blat.proc3825164.chain_2006	2	STRG.1826.1,STRG.1826.2,blat.proc3825164.chain_1999,blat.proc3825164.chain_2000,blat.proc3825164.chain_2001,blat.proc3825164.chain_2004	6
scaffold_16	starts_in_intron	751711	751711	-	asmbl_16898,asmbl_16901	none	blat.proc3825158.chain_184,blat.proc3825158.chain_188	2	STRG.19055.1,blat.proc3825158.chain_185,blat.proc3825158.chain_187,blat.proc3825158.chain_189	4
scaffold_2	alt_acceptor	18614248	18614249	-	asmbl_23804	none	STRG.2737.1,blat.proc3825148.chain_2649	2	blat.proc3825148.chain_2647	1
scaffold_14	skipped_exon	2374520	2375890	-	asmbl_12934,asmbl_12938	none	STRG.16854.5,STRG.16854.7	2	STRG.16854.2,STRG.16854.3,STRG.16854.4,STRG.16854.6	4
scaffold_13	spliced_intron	394206	395582	-	asmbl_9334,asmbl_9335,asmbl_9345,asmbl_9349,asmbl_9351	none	STRG.15444.2,STRG.15444.4,STRG.15444.5,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i5,blat.proc3825156.chain_351,blat.proc3825156.chain_354,blat.proc3825156.chain_360,blat.proc3825156.chain_362	11	Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_353,blat.proc3825156.chain_359,blat.proc3825156.chain_366	6
scaffold_4	spliced_intron	19539846	19539879	-	asmbl_43449	none	STRG.5541.3	1	STRG.5541.2,Trinity_GG_3107_c0_g1_i2,blat.proc3825150.chain_1719	3
scaffold_15	alt_acceptor	6087212	6087213	+	asmbl_15235	none	STRG.18272.1,blat.proc3825172.chain_2950	2	STRG.18272.2	1
scaffold_7	ends_in_intron	1229731	1229731	+	asmbl_49591	none	STRG.8637.3,blat.proc3825168.chain_1067	2	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i16,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076,blat.proc3825168.chain_1080	11
scaffold_6	ends_in_intron	2484199	2484199	+	asmbl_46757	none	blat.proc3825166.chain_3497	1	STRG.7248.1,STRG.7248.4,STRG.7248.5,STRG.7248.6,blat.proc3825166.chain_3496,blat.proc3825166.chain_3499	6
scaffold_21	retained_intron	5183291	5183495	+	asmbl_28558	none	Trinity_GG_30635_c0_g1_i2,blat.proc3825176.chain_1251	2	STRG.24055.1,Trinity_GG_30635_c0_g1_i1,blat.proc3825176.chain_1252	3
scaffold_6	alternate_exon	878101	878148	+	asmbl_46684	none	STRG.7158.2	1	STRG.7158.1	1
scaffold_13	retained_intron	7668097	7668467	+	asmbl_11069	none	STRG.16052.1,Trinity_GG_26137_c1_g1_i1,blat.proc3825172.chain_832	3	STRG.16052.2	1
scaffold_7	alt_donor	12559598	12559599	-	asmbl_51245	none	STRG.9364.1,blat.proc3825152.chain_1718	2	STRG.9364.2	1
scaffold_28	starts_in_intron	3851456	3851456	-	asmbl_38178	none	Trinity_GG_16575_c0_g1_i2,blat.proc3825162.chain_2730	2	STRG.29584.1,STRG.29584.2	2
scaffold_4	starts_in_intron	12617145	12617145	-	asmbl_42936	none	blat.proc3825150.chain_1091	1	STRG.4901.1,blat.proc3825150.chain_1092	2
scaffold_5	alt_acceptor	11602136	11602137	-	asmbl_44413	none	STRG.6423.1	1	STRG.6423.2	1
scaffold_9	retained_intron	12436520	12436852	+	asmbl_54431	none	STRG.11558.1,Trinity_GG_23748_c0_g1_i1,blat.proc3825170.chain_343	3	blat.proc3825170.chain_342	1
scaffold_16	alternate_exon	14520884	14520947	-	asmbl_17452	none	STRG.19832.2,blat.proc3825158.chain_868	2	STRG.19832.1,blat.proc3825158.chain_867	2
scaffold_6	spliced_intron	8645146	8645230	-	asmbl_48579	none	STRG.7755.1,blat.proc3825152.chain_121	2	STRG.7755.2	1
scaffold_16	alt_acceptor	8579454	8579455	+	asmbl_16407,asmbl_16409	none	STRG.19485.1,blat.proc3825174.chain_356,blat.proc3825174.chain_357	3	STRG.19485.2,blat.proc3825174.chain_353	2
scaffold_27	alternate_exon	329629	329670	-	asmbl_36669	none	STRG.28560.2,blat.proc3825162.chain_1785	2	STRG.28560.1,Trinity_GG_15979_c0_g1_i4,blat.proc3825162.chain_1786	3
scaffold_13	ends_in_intron	4248155	4248155	-	asmbl_9615	none	Trinity_GG_8825_c1_g1_i1,blat.proc3825156.chain_595	2	STRG.15752.1,STRG.15752.3,STRG.15752.4,STRG.15752.5,blat.proc3825156.chain_594	5
scaffold_3	spliced_intron	9518619	9518734	+	asmbl_40226,asmbl_40227,asmbl_40228,asmbl_40229	none	STRG.3436.1,STRG.3436.2,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3676,blat.proc3825164.chain_3677,blat.proc3825164.chain_3678	7	Trinity_GG_19245_c0_g1_i2,blat.proc3825164.chain_3674	2
scaffold_2	ends_in_intron	6512406	6512406	-	asmbl_23205	none	STRG.2013.4,Trinity_GG_1121_c0_g1_i2,blat.proc3825148.chain_2018	3	STRG.2013.3	1
scaffold_5	starts_in_intron	19030149	19030149	-	asmbl_44887	none	STRG.7022.3,blat.proc3825150.chain_3134	2	STRG.7022.2,STRG.7022.4,STRG.7022.5,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133	5
scaffold_25	ends_in_intron	3293838	3293838	-	asmbl_34123	none	STRG.27284.8,blat.proc3825162.chain_655	2	STRG.27284.2,STRG.27284.3,STRG.27284.6,STRG.27284.7,blat.proc3825162.chain_656,blat.proc3825162.chain_657,blat.proc3825162.chain_658	7
scaffold_14	skipped_exon	3172564	3173432	-	asmbl_12998	none	STRG.16909.1,blat.proc3825156.chain_1761	2	STRG.16909.2,blat.proc3825156.chain_1763	2
scaffold_18	alt_acceptor	4762377	4762378	+	asmbl_20553,asmbl_20554,asmbl_20555	none	STRG.21273.1,STRG.21273.3,STRG.21273.4,Trinity_GG_29026_c1_g1_i4,blat.proc3825174.chain_2228	5	STRG.21273.2	1
scaffold_18	spliced_intron	7943320	7944083	-	asmbl_19987	none	STRG.21493.1	1	Trinity_GG_12022_c0_g1_i2,blat.proc3825158.chain_2408	2
scaffold_12	alt_acceptor	10583780	10583781	+	asmbl_7938	none	STRG.15029.2	1	STRG.15029.1	1
scaffold_9	alternate_exon	16741597	16741705	-	asmbl_55624	none	STRG.11819.1	1	STRG.11819.2,Trinity_GG_6538_c0_g1_i1,blat.proc3825154.chain_307	3
scaffold_2	alt_donor	13898326	13898327	-	asmbl_23537,asmbl_23538,asmbl_23539,asmbl_23540,asmbl_23541	none	STRG.2384.1,STRG.2384.2,blat.proc3825148.chain_2389,blat.proc3825148.chain_2390,blat.proc3825148.chain_2391,blat.proc3825148.chain_2392	6	Trinity_GG_1330_c4_g1_i1,blat.proc3825148.chain_2396	2
scaffold_3	starts_in_intron	1767143	1767143	+	asmbl_39880,asmbl_39882	none	STRG.2994.4,Trinity_GG_19006_c0_g1_i3,blat.proc3825164.chain_3228	3	STRG.2994.1	1
scaffold_2	skipped_exon	13051298	13053021	+	asmbl_24808	none	STRG.2330.3,blat.proc3825164.chain_2480	2	STRG.2330.2,blat.proc3825164.chain_2481	2
scaffold_26	retained_intron	3563037	3563144	+	asmbl_34789,asmbl_34790	none	STRG.28036.5,Trinity_GG_32778_c0_g1_i5,blat.proc3825178.chain_1076,blat.proc3825178.chain_1077	4	STRG.28036.1,STRG.28036.2	2
scaffold_23	retained_exon	7278481	7278967	-	asmbl_31025,asmbl_31026	none	STRG.26052.2,STRG.26052.3	2	STRG.26052.1,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	3
scaffold_2	retained_intron	861757	861958	+	asmbl_24115	none	blat.proc3825164.chain_1703	1	STRG.1562.1,STRG.1562.2,STRG.1562.3,blat.proc3825164.chain_1700	4
scaffold_2	retained_intron	14557091	14557286	+	asmbl_24959	none	blat.proc3825164.chain_2657	1	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2658,blat.proc3825164.chain_2661,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11
scaffold_8	starts_in_intron	8590537	8590537	-	asmbl_51962	none	blat.proc3825152.chain_2391	1	STRG.10114.1,blat.proc3825152.chain_2392	2
scaffold_2	spliced_intron	899777	899876	+	asmbl_24147,asmbl_24148	none	STRG.1569.1,STRG.1569.2,blat.proc3825164.chain_1721	3	STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717	3
scaffold_19	retained_intron	12107338	12107555	-	asmbl_22455,asmbl_22458	none	STRG.22539.2,STRG.22539.3,blat.proc3825158.chain_3188	3	STRG.22539.5,blat.proc3825158.chain_3192	2
scaffold_26	skipped_exon	5657869	5660156	-	asmbl_35609,asmbl_35611,asmbl_35613,asmbl_35614	none	STRG.28272.2,blat.proc3825162.chain_1526,blat.proc3825162.chain_1529,blat.proc3825162.chain_1530	4	STRG.28272.1,STRG.28272.3,blat.proc3825162.chain_1527,blat.proc3825162.chain_1528,blat.proc3825162.chain_1532	5
scaffold_2	retained_exon	14273093	14273221	+	asmbl_24899,asmbl_24903	none	STRG.2428.2,blat.proc3825164.chain_2591	2	STRG.2428.1,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596,blat.proc3825164.chain_2597	4
scaffold_19	spliced_intron	165632	165684	+	asmbl_21180	none	STRG.21830.2	1	STRG.21830.1,Trinity_GG_29406_c0_g1_i2,blat.proc3825174.chain_2910	3
scaffold_5	alternate_exon	18500445	18506119	-	asmbl_44840	none	STRG.6983.1,STRG.6983.2,Trinity_GG_3890_c1_g1_i2,blat.proc3825150.chain_3094,blat.proc3825150.chain_3095	5	STRG.6983.3,blat.proc3825150.chain_3093	2
scaffold_13	alt_acceptor	5815163	5815164	+	asmbl_10899	none	STRG.15896.1	1	blat.proc3825172.chain_706	1
scaffold_14	spliced_intron	13895808	13895933	+	asmbl_12511,asmbl_12512,asmbl_12513	none	STRG.17673.1,STRG.17673.2,blat.proc3825172.chain_2393	3	blat.proc3825172.chain_2392	1
scaffold_6	alt_donor	15112436	15112437	+	asmbl_47657	none	STRG.8277.2	1	STRG.8277.1,STRG.8277.3,blat.proc3825168.chain_760	3
scaffold_1	retained_intron	14276749	14276836	+	asmbl_2365	none	Trinity_GG_17932_c0_g1_i2,blat.proc3825164.chain_1202	2	STRG.1023.1,STRG.1023.2,Trinity_GG_17932_c0_g1_i1,Trinity_GG_17932_c0_g1_i4,Trinity_GG_17932_c0_g1_i5,blat.proc3825164.chain_1200,blat.proc3825164.chain_1201,blat.proc3825164.chain_1203	8
scaffold_2	ends_in_intron	6087157	6087157	-	asmbl_23171	none	STRG.1980.4,Trinity_GG_1051_c2_g1_i1,blat.proc3825148.chain_1873	3	STRG.1980.1,STRG.1980.3,Trinity_GG_1051_c0_g1_i2,Trinity_GG_1051_c0_g1_i6,blat.proc3825148.chain_1867,blat.proc3825148.chain_1868	6
scaffold_21	retained_intron	5549480	5549620	+	asmbl_28578	none	Trinity_GG_30663_c0_g1_i3,blat.proc3825176.chain_1306	2	STRG.24088.1,STRG.24088.2,blat.proc3825176.chain_1302,blat.proc3825176.chain_1303,blat.proc3825176.chain_1304,blat.proc3825176.chain_1305	6
scaffold_8	spliced_intron	4186377	4186485	+	asmbl_52817	none	STRG.9897.1,blat.proc3825168.chain_2471	2	blat.proc3825168.chain_2472,blat.proc3825168.chain_2473	2
scaffold_23	alternate_exon	5618925	5621741	-	asmbl_30926,asmbl_30927	none	STRG.25937.2,STRG.25937.3,blat.proc3825160.chain_3058,blat.proc3825160.chain_3059	4	STRG.25937.1	1
scaffold_8	starts_in_intron	7447412	7447412	-	asmbl_51905	none	blat.proc3825152.chain_2247	1	STRG.10069.1,blat.proc3825152.chain_2248,blat.proc3825152.chain_2249	3
scaffold_10	retained_intron	8897245	8897475	-	asmbl_4620	none	Trinity_GG_7072_c0_g1_i21,blat.proc3825154.chain_1270	2	blat.proc3825154.chain_1262,blat.proc3825154.chain_1272	2
scaffold_7	ends_in_intron	15289186	15289186	+	asmbl_50439,asmbl_50440	none	Trinity_GG_22623_c0_g1_i7,blat.proc3825168.chain_2082,blat.proc3825168.chain_2084	3	STRG.9544.1	1
scaffold_27	alternate_exon	5678470	5678526	+	asmbl_36357,asmbl_36360,asmbl_36361	none	STRG.28977.1,STRG.28977.2,blat.proc3825178.chain_2114	3	STRG.28977.3,STRG.28977.4,blat.proc3825178.chain_2111,blat.proc3825178.chain_2112,blat.proc3825178.chain_2115	5
scaffold_3	retained_exon	10275025	10275117	+	asmbl_40247,asmbl_40253,asmbl_40257	none	STRG.3467.1,STRG.3467.3,blat.proc3825164.chain_3727,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734	5	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3
scaffold_3	alt_acceptor	5870705	5870706	+	asmbl_40087	none	STRG.3249.1,blat.proc3825164.chain_3504	2	STRG.3249.2	1
scaffold_2	starts_in_intron	4130613	4130613	+	asmbl_24338,asmbl_24339	none	Trinity_GG_18314_c0_g1_i2,blat.proc3825164.chain_1927,blat.proc3825164.chain_1928	3	STRG.1855.1	1
scaffold_8	skipped_exon	11581693	11582127	+	asmbl_53239	none	STRG.10363.1,blat.proc3825168.chain_2851	2	STRG.10363.2,blat.proc3825168.chain_2852	2
scaffold_5	retained_intron	14680454	14680588	+	asmbl_45956	none	Trinity_GG_20943_c0_g1_i2,blat.proc3825166.chain_2839	2	STRG.6672.1,Trinity_GG_20943_c0_g1_i4,blat.proc3825166.chain_2838	3
scaffold_6	spliced_intron	12480315	12482223	+	asmbl_47398,asmbl_47399,asmbl_47401,asmbl_47402,asmbl_47403	none	STRG.8006.1,STRG.8006.2,STRG.8006.4,blat.proc3825168.chain_473,blat.proc3825168.chain_474,blat.proc3825168.chain_475,blat.proc3825168.chain_477	7	STRG.8006.3,Trinity_GG_21705_c0_g1_i2,Trinity_GG_21705_c1_g1_i1,blat.proc3825168.chain_476,blat.proc3825168.chain_478	5
scaffold_19	retained_intron	12491982	12492152	+	asmbl_21810,asmbl_21814,asmbl_21815	none	STRG.22590.2,blat.proc3825174.chain_3623,blat.proc3825174.chain_3628	3	STRG.22590.5	1
scaffold_3	retained_intron	14186116	14186364	-	asmbl_39332,asmbl_39333,asmbl_39334	none	STRG.3761.1,STRG.3761.4,blat.proc3825148.chain_3664	3	blat.proc3825148.chain_3668	1
scaffold_24	alt_acceptor	6168125	6168126	-	asmbl_32937	none	STRG.26677.2,blat.proc3825160.chain_3726	2	STRG.26677.3,blat.proc3825160.chain_3724	2
scaffold_1	starts_in_intron	12931025	12931025	+	asmbl_2279	none	Trinity_GG_17884_c0_g1_i1,blat.proc3825164.chain_1103	2	STRG.928.1,STRG.928.2,Trinity_GG_17884_c0_g1_i2,blat.proc3825164.chain_1102	4
scaffold_27	alt_donor	7230248	7230249	+	asmbl_36433	none	STRG.29080.2,blat.proc3825178.chain_2275	2	blat.proc3825178.chain_2276	1
scaffold_16	alt_acceptor	5963168	5963169	+	asmbl_16250	none	STRG.19328.2	1	STRG.19328.1	1
scaffold_2	spliced_intron	6083683	6083943	-	asmbl_23174	none	STRG.1980.2,Trinity_GG_1051_c0_g1_i5,blat.proc3825148.chain_1870	3	Trinity_GG_1051_c0_g1_i9,blat.proc3825148.chain_1869	2
scaffold_9	skipped_exon	16561348	16563669	-	asmbl_55583,asmbl_55585,asmbl_55586	none	STRG.11806.1,STRG.11806.5,blat.proc3825154.chain_270,blat.proc3825154.chain_271	4	STRG.11806.2,STRG.11806.3,STRG.11806.4,blat.proc3825154.chain_267,blat.proc3825154.chain_272,blat.proc3825154.chain_274	6
scaffold_22	starts_in_intron	8078705	8078705	+	asmbl_30261	none	Trinity_GG_31215_c0_g1_i1,blat.proc3825176.chain_2242	2	STRG.25162.1	1
scaffold_14	skipped_exon	1375462	1376687	-	asmbl_12879	none	blat.proc3825156.chain_1626	1	STRG.16791.1,STRG.16791.2,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625	4
scaffold_5	starts_in_intron	191564	191564	-	asmbl_43757	none	blat.proc3825150.chain_1804	1	STRG.5588.1,blat.proc3825150.chain_1805	2
scaffold_4	retained_exon	7151690	7151793	+	asmbl_41468,asmbl_41469	none	STRG.4559.1,STRG.4559.4	2	STRG.4559.2,STRG.4559.3,STRG.4559.5,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	5
scaffold_6	retained_exon	9134985	9135029	+	asmbl_47208,asmbl_47209,asmbl_47212	none	STRG.7790.4,blat.proc3825168.chain_210,blat.proc3825168.chain_211,blat.proc3825168.chain_212	4	STRG.7790.1,STRG.7790.2,STRG.7790.3,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_217,blat.proc3825168.chain_219	7
scaffold_25	alternate_exon	6839661	6839746	-	asmbl_34374	none	STRG.27545.1,Trinity_GG_15458_c0_g1_i2,blat.proc3825162.chain_937	3	STRG.27545.2,Trinity_GG_15458_c0_g1_i1,blat.proc3825162.chain_936	3
scaffold_18	starts_in_intron	1392375	1392375	-	asmbl_19619	none	Trinity_GG_11791_c0_g1_i2,blat.proc3825158.chain_2004	2	STRG.21025.4,blat.proc3825158.chain_2003	2
scaffold_19	starts_in_intron	6485568	6485568	+	asmbl_21418	none	Trinity_GG_29556_c0_g1_i3,blat.proc3825174.chain_3179	2	STRG.22180.1	1
scaffold_26	starts_in_intron	9609151	9609151	+	asmbl_35250	none	blat.proc3825178.chain_1634	1	STRG.28513.1,Trinity_GG_33085_c0_g1_i3,blat.proc3825178.chain_1633	3
scaffold_2	alternate_exon	2868803	2880762	-	asmbl_22931,asmbl_22933	none	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1663,blat.proc3825148.chain_1664,blat.proc3825148.chain_1665	5	blat.proc3825148.chain_1666	1
scaffold_19	retained_intron	9456754	9457176	+	asmbl_21592	none	STRG.22377.3,Trinity_GG_29686_c1_g1_i3,blat.proc3825174.chain_3389	3	Trinity_GG_29686_c1_g1_i4,blat.proc3825174.chain_3387	2
scaffold_4	spliced_intron	3528251	3528471	-	asmbl_42450	none	STRG.4289.5	1	STRG.4289.1	1
scaffold_27	skipped_exon	7521642	7522241	+	asmbl_36464	none	STRG.29117.2,blat.proc3825178.chain_2324	2	STRG.29117.4	1
scaffold_2	alt_donor	8305576	8305577	+	asmbl_24633	none	STRG.2113.2	1	STRG.2113.1,Trinity_GG_18514_c1_g1_i1,blat.proc3825164.chain_2316	3
scaffold_11	ends_in_intron	9531702	9531702	-	asmbl_6940	none	Trinity_GG_7811_c0_g1_i2,blat.proc3825154.chain_2508	2	STRG.13981.1,blat.proc3825154.chain_2509	2
scaffold_22	spliced_intron	485089	485440	+	asmbl_29856	none	blat.proc3825176.chain_1752	1	blat.proc3825176.chain_1750	1
scaffold_10	retained_intron	5010843	5010929	-	asmbl_4334	none	STRG.12327.1,blat.proc3825154.chain_847	2	blat.proc3825154.chain_848	1
scaffold_13	retained_intron	12039370	12039399	+	asmbl_11323	none	STRG.16345.1	1	STRG.16345.2	1
scaffold_10	skipped_exon	5848183	5849222	-	asmbl_4391	none	STRG.12404.1	1	STRG.12404.2,STRG.12404.3,blat.proc3825154.chain_885,blat.proc3825154.chain_886,blat.proc3825154.chain_887	5
scaffold_4	alt_acceptor	16433825	16433826	-	asmbl_43172	none	STRG.5219.3	1	STRG.5219.1,STRG.5219.2	2
scaffold_6	retained_intron	12116976	12117069	+	asmbl_47374	none	STRG.7985.4,Trinity_GG_21681_c0_g1_i5,blat.proc3825168.chain_431	3	STRG.7985.3,Trinity_GG_21681_c0_g1_i2,blat.proc3825168.chain_429	3
scaffold_13	ends_in_intron	11563185	11563185	+	asmbl_11277	none	STRG.16305.2,blat.proc3825172.chain_1008	2	STRG.16305.1,blat.proc3825172.chain_1007	2
scaffold_25	alt_donor	8705312	8705313	+	asmbl_33752,asmbl_33753	none	STRG.27702.1,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_763,blat.proc3825178.chain_768	4	STRG.27702.2,blat.proc3825178.chain_766,blat.proc3825178.chain_770	3
scaffold_4	alt_acceptor	13076060	13076061	+	asmbl_41775,asmbl_41776,asmbl_41777,asmbl_41778,asmbl_41779,asmbl_41780	none	STRG.4947.1,STRG.4947.3,STRG.4947.4,STRG.4947.5,blat.proc3825166.chain_1379,blat.proc3825166.chain_1380,blat.proc3825166.chain_1381,blat.proc3825166.chain_1382	8	STRG.4947.2	1
scaffold_20	spliced_intron	7104772	7104894	-	asmbl_25877	none	STRG.23282.3,blat.proc3825160.chain_374	2	STRG.23282.1,blat.proc3825160.chain_373,blat.proc3825160.chain_376	3
scaffold_5	retained_intron	18981494	18981592	+	asmbl_46298	none	Trinity_GG_21123_c0_g1_i1,blat.proc3825166.chain_3133	2	STRG.7013.1,Trinity_GG_21123_c0_g1_i2,blat.proc3825166.chain_3134	3
scaffold_4	alt_acceptor	17806024	17806025	+	asmbl_42075	none	blat.proc3825166.chain_1696	1	blat.proc3825166.chain_1697	1
scaffold_18	skipped_exon	1893284	1894703	-	asmbl_19656,asmbl_19663,asmbl_19664	none	STRG.21081.3,STRG.21081.7,STRG.21081.8	3	blat.proc3825158.chain_2010,blat.proc3825158.chain_2011,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	8
scaffold_20	ends_in_intron	9440578	9440578	-	asmbl_26031,asmbl_26033	none	STRG.23483.2,Trinity_GG_13097_c0_g1_i3,blat.proc3825160.chain_560,blat.proc3825160.chain_561	4	STRG.23483.1,Trinity_GG_13097_c0_g1_i4,blat.proc3825160.chain_562	3
scaffold_21	ends_in_intron	7386535	7386535	+	asmbl_28731	none	blat.proc3825176.chain_1413	1	STRG.24265.1,STRG.24265.2,blat.proc3825176.chain_1412	3
scaffold_18	retained_exon	6901792	6901898	+	asmbl_20688	none	STRG.21393.1,blat.proc3825174.chain_2399	2	Trinity_GG_29115_c0_g1_i2,blat.proc3825174.chain_2400	2
scaffold_3	retained_intron	14334025	14334182	-	asmbl_39364	none	STRG.3780.3,Trinity_GG_2051_c0_g1_i4,blat.proc3825148.chain_3627	3	STRG.3780.1,STRG.3780.2,Trinity_GG_2051_c0_g1_i1,Trinity_GG_2051_c0_g1_i2,blat.proc3825148.chain_3625,blat.proc3825148.chain_3626	6
scaffold_2	spliced_intron	16084074	16084172	-	asmbl_23665,asmbl_23668,asmbl_23670,asmbl_23671	none	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2436,blat.proc3825148.chain_2437,blat.proc3825148.chain_2438	5	blat.proc3825148.chain_2435	1
scaffold_6	alt_donor	13176481	13176482	+	asmbl_47479,asmbl_47481	none	STRG.8075.1,STRG.8075.2,blat.proc3825168.chain_556,blat.proc3825168.chain_557	4	STRG.8075.3,blat.proc3825168.chain_555	2
scaffold_7	retained_intron	12437984	12438059	+	asmbl_50266	none	blat.proc3825168.chain_1882	1	STRG.9343.1,STRG.9343.2,blat.proc3825168.chain_1883	3
scaffold_4	retained_intron	8822899	8822991	-	asmbl_42793	none	STRG.4698.1,blat.proc3825150.chain_832	2	STRG.4698.2,blat.proc3825150.chain_833	2
scaffold_2	spliced_intron	19884108	19884202	-	asmbl_23874	none	STRG.2835.1,blat.proc3825148.chain_2777	2	blat.proc3825148.chain_2776	1
scaffold_16	spliced_intron	8296144	8296212	+	asmbl_16387	none	STRG.19465.2	1	STRG.19465.1	1
scaffold_6	alt_donor	13126082	13126083	-	asmbl_48875	none	STRG.8069.1,blat.proc3825152.chain_466	2	STRG.8069.2,blat.proc3825152.chain_467	2
scaffold_23	starts_in_intron	10889390	10889390	+	asmbl_31885	none	Trinity_GG_31828_c0_g2_i1,blat.proc3825176.chain_3249	2	STRG.26287.1,blat.proc3825176.chain_3250	2
scaffold_19	spliced_intron	7466932	7467251	+	asmbl_21457	none	Trinity_GG_29583_c0_g1_i3,blat.proc3825174.chain_3214	2	STRG.22222.1,blat.proc3825174.chain_3215	2
scaffold_7	starts_in_intron	18958516	18958516	-	asmbl_51509	none	blat.proc3825152.chain_2043	1	STRG.9698.1,blat.proc3825152.chain_2044	2
scaffold_22	alternate_exon	5935841	5936700	+	asmbl_30074	none	STRG.24944.3	1	STRG.24944.2	1
scaffold_2	starts_in_intron	17483075	17483075	-	asmbl_23730	none	blat.proc3825148.chain_2562	1	STRG.2635.1,blat.proc3825148.chain_2563	2
scaffold_10	retained_intron	3439144	3439233	-	asmbl_4210	none	Trinity_GG_6782_c0_g1_i1,blat.proc3825154.chain_722	2	STRG.12176.2	1
scaffold_3	ends_in_intron	6832721	6832721	+	asmbl_40139	none	blat.proc3825164.chain_3582	1	STRG.3309.1,STRG.3309.2,blat.proc3825164.chain_3583	3
scaffold_2	retained_intron	7408928	7409546	-	asmbl_23252,asmbl_23254,asmbl_23256,asmbl_23259	none	STRG.2065.1,STRG.2065.5,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1983,blat.proc3825148.chain_1984,blat.proc3825148.chain_1985	7	STRG.2065.4,Trinity_GG_1101_c0_g1_i5,blat.proc3825148.chain_1986	3
scaffold_7	skipped_exon	4928728	4929215	+	asmbl_49772,asmbl_49773,asmbl_49774,asmbl_49776,asmbl_49777	none	STRG.8852.1,STRG.8852.2,STRG.8852.3,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1352	7	blat.proc3825168.chain_1344,blat.proc3825168.chain_1348	2
scaffold_1	retained_intron	14305743	14305929	+	asmbl_2377	none	Trinity_GG_17936_c0_g1_i4,blat.proc3825164.chain_1214	2	STRG.1021.1,blat.proc3825164.chain_1213	2
scaffold_4	alternate_exon	17129029	17129377	-	asmbl_43259	none	Trinity_GG_2969_c0_g1_i1,blat.proc3825150.chain_1490	2	STRG.5313.1,Trinity_GG_2969_c0_g1_i2	2
scaffold_2	retained_intron	16413485	16413596	-	asmbl_23690	none	blat.proc3825148.chain_2558	1	STRG.2587.1,STRG.2587.2,blat.proc3825148.chain_2556,blat.proc3825148.chain_2557,blat.proc3825148.chain_2559	5
scaffold_23	retained_exon	7277616	7277667	-	asmbl_31022,asmbl_31024,asmbl_31025,asmbl_31026	none	STRG.26052.1,STRG.26052.2,STRG.26052.3,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	5	STRG.26052.4	1
scaffold_1	starts_in_intron	1983329	1983329	-	asmbl_97	none	Trinity_GG_86_c0_g2_i1,blat.proc3825148.chain_138	2	blat.proc3825148.chain_133,blat.proc3825148.chain_135	2
scaffold_9	alternate_exon	12112867	12113014	+	asmbl_54414	none	blat.proc3825170.chain_368	1	STRG.11537.1,blat.proc3825170.chain_366	2
scaffold_26	ends_in_intron	2250588	2250588	+	asmbl_34735	none	blat.proc3825178.chain_1019	1	STRG.27955.2	1
scaffold_17	skipped_exon	8599879	8600656	+	asmbl_19002	none	STRG.20471.2	1	STRG.20471.1,blat.proc3825174.chain_1332	2
scaffold_8	skipped_exon	9881810	9883103	+	asmbl_53128	none	STRG.10236.2,blat.proc3825168.chain_2802	2	STRG.10236.1,blat.proc3825168.chain_2804	2
scaffold_7	alt_acceptor	8077836	8077837	-	asmbl_50982	none	STRG.9048.1,blat.proc3825152.chain_1444	2	STRG.9048.2	1
scaffold_27	ends_in_intron	9870375	9870375	+	asmbl_36535	none	Trinity_GG_33476_c1_g1_i1	1	STRG.29213.1	1
scaffold_28	alt_donor	1864015	1864016	-	asmbl_38014	none	STRG.29365.1,blat.proc3825162.chain_2529	2	STRG.29365.2,blat.proc3825162.chain_2530	2
scaffold_6	skipped_exon	11668222	11669586	+	asmbl_47355	none	STRG.7960.1,Trinity_GG_21670_c0_g1_i2,blat.proc3825168.chain_405	3	STRG.7960.2	1
scaffold_14	starts_in_intron	7473953	7473953	-	asmbl_13211	none	blat.proc3825156.chain_1870	1	STRG.17192.1,STRG.17192.2,STRG.17192.3,blat.proc3825156.chain_1871	4
scaffold_6	retained_exon	14116838	14116948	+	asmbl_47581	none	STRG.8177.2	1	STRG.8177.1	1
scaffold_19	ends_in_intron	5344181	5344181	-	asmbl_22153	none	blat.proc3825158.chain_2961	1	STRG.22102.1,STRG.22102.2,STRG.22102.3,blat.proc3825158.chain_2954,blat.proc3825158.chain_2957	5
scaffold_3	retained_intron	17361952	17362032	-	asmbl_39548,asmbl_39558	none	STRG.3971.3,STRG.3971.4,blat.proc3825150.chain_178	3	STRG.3971.1,STRG.3971.2,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_179,blat.proc3825150.chain_180,blat.proc3825150.chain_181,blat.proc3825150.chain_182,blat.proc3825150.chain_183,blat.proc3825150.chain_184,blat.proc3825150.chain_185	12
scaffold_14	spliced_intron	5451413	5451514	+	asmbl_12012	none	STRG.17020.1,Trinity_GG_26638_c0_g2_i2,blat.proc3825172.chain_1726	3	blat.proc3825172.chain_1725	1
scaffold_17	alternate_exon	8156655	8156737	+	asmbl_18937,asmbl_18938	none	STRG.20433.1,STRG.20433.2	2	blat.proc3825174.chain_1263,blat.proc3825174.chain_1265	2
scaffold_1	alt_acceptor	9516100	9516101	-	asmbl_542	none	STRG.637.3	1	STRG.637.4,Trinity_GG_338_c0_g1_i2,blat.proc3825148.chain_629	3
scaffold_14	retained_exon	9273524	9273610	-	asmbl_13360,asmbl_13362,asmbl_13366	none	STRG.17338.1,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204	5	STRG.17338.4	1
scaffold_4	ends_in_intron	14966220	14966220	+	asmbl_41908	none	STRG.5106.2,blat.proc3825166.chain_1532	2	STRG.5106.1,Trinity_GG_20178_c0_g1_i4,blat.proc3825166.chain_1533,blat.proc3825166.chain_1534,blat.proc3825166.chain_1535	5
scaffold_3	retained_intron	3271219	3272019	-	asmbl_38763	none	Trinity_GG_1668_c0_g1_i5,blat.proc3825148.chain_2949	2	STRG.3073.1,blat.proc3825148.chain_2952,blat.proc3825148.chain_2954	3
scaffold_6	skipped_exon	18172535	18174830	-	asmbl_49228	none	STRG.8498.1,blat.proc3825152.chain_915	2	blat.proc3825152.chain_916	1
scaffold_1	skipped_exon	8631689	8634025	-	asmbl_459	none	STRG.571.1,blat.proc3825148.chain_545	2	STRG.571.2,Trinity_GG_304_c0_g1_i5,blat.proc3825148.chain_546	3
scaffold_87	alt_acceptor	14818	14819	+	asmbl_53727	none	STRG.30146.3	1	STRG.30146.4,STRG.30146.5	2
scaffold_1	spliced_intron	11687601	11687763	+	asmbl_2131	none	STRG.780.1,blat.proc3825164.chain_923,blat.proc3825164.chain_924	3	STRG.780.2,blat.proc3825164.chain_922	2
scaffold_20	retained_intron	8578419	8578764	-	asmbl_26004	none	blat.proc3825160.chain_397	1	STRG.23410.1,blat.proc3825160.chain_396	2
scaffold_17	ends_in_intron	12199256	12199256	+	asmbl_19277	none	blat.proc3825174.chain_1665	1	STRG.20759.1,STRG.20759.2,STRG.20759.3,blat.proc3825174.chain_1661,blat.proc3825174.chain_1662	5
scaffold_17	alt_acceptor	6684385	6684386	+	asmbl_18865	none	STRG.20322.3,blat.proc3825174.chain_1157	2	STRG.20322.1,blat.proc3825174.chain_1159	2
scaffold_5	starts_in_intron	16591163	16591163	-	asmbl_44758	none	blat.proc3825150.chain_3027	1	STRG.6850.1,STRG.6850.2,blat.proc3825150.chain_3028	3
scaffold_5	alternate_exon	14261869	14262503	+	asmbl_45922	none	blat.proc3825166.chain_2783	1	STRG.6638.1,STRG.6638.2,blat.proc3825166.chain_2785,blat.proc3825166.chain_2788	4
scaffold_22	ends_in_intron	1006835	1006835	+	asmbl_29911	none	STRG.24754.3,Trinity_GG_30985_c0_g1_i9,blat.proc3825176.chain_1860	3	STRG.24754.2,STRG.24754.4,blat.proc3825176.chain_1856,blat.proc3825176.chain_1858,blat.proc3825176.chain_1859,blat.proc3825176.chain_1861	6
scaffold_15	spliced_intron	15523267	15523823	-	asmbl_14792	none	Trinity_GG_10642_c0_g1_i1,blat.proc3825158.chain_74	2	STRG.18941.1,Trinity_GG_10642_c0_g1_i2,blat.proc3825158.chain_75	3
scaffold_4	spliced_intron	4692582	4692952	+	asmbl_41296,asmbl_41298,asmbl_41299,asmbl_41301,asmbl_41302,asmbl_41303	none	STRG.4379.1,blat.proc3825166.chain_814,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_818,blat.proc3825166.chain_820	6	blat.proc3825166.chain_813,blat.proc3825166.chain_819	2
scaffold_11	alternate_exon	3138393	3141608	-	asmbl_6530	none	STRG.13446.1,blat.proc3825154.chain_2026	2	blat.proc3825154.chain_2025	1
scaffold_18	skipped_exon	246105	247221	-	asmbl_19573	none	STRG.20978.1,blat.proc3825158.chain_1928	2	STRG.20978.2,blat.proc3825158.chain_1927	2
scaffold_2	starts_in_intron	18721335	18721335	+	asmbl_25240	none	blat.proc3825164.chain_3009	1	STRG.2752.1,STRG.2752.2,blat.proc3825164.chain_3011	3
scaffold_26	retained_intron	6350817	6351171	-	asmbl_35681	none	STRG.28335.4,blat.proc3825162.chain_1569	2	STRG.28335.1	1
scaffold_17	alt_acceptor	4187914	4187915	-	asmbl_17845	none	blat.proc3825158.chain_1221	1	blat.proc3825158.chain_1220	1
scaffold_11	alt_donor	8426296	8426297	+	asmbl_5776,asmbl_5777	none	Trinity_GG_24892_c0_g1_i2,Trinity_GG_24892_c0_g1_i3,blat.proc3825170.chain_2299,blat.proc3825170.chain_2301	4	STRG.13861.1,STRG.13861.2	2
scaffold_13	spliced_intron	12253613	12253769	+	asmbl_11348	none	STRG.16359.1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1115	3	STRG.16359.4,blat.proc3825172.chain_1113	2
scaffold_2	alternate_exon	29243	29271	+	asmbl_24060,asmbl_24064	none	STRG.1496.1,Trinity_GG_18174_c0_g1_i4,blat.proc3825164.chain_1641	3	STRG.1496.3,Trinity_GG_18174_c0_g1_i1,Trinity_GG_18174_c0_g1_i10,blat.proc3825164.chain_1639,blat.proc3825164.chain_1643,blat.proc3825164.chain_1644,blat.proc3825164.chain_1645	7
scaffold_22	ends_in_intron	7699191	7699191	-	asmbl_29422	none	Trinity_GG_14042_c0_g1_i2,blat.proc3825160.chain_2282	2	STRG.25115.1,blat.proc3825160.chain_2281	2
scaffold_9	skipped_exon	12112505	12113296	+	asmbl_54409	none	STRG.11537.1,blat.proc3825170.chain_366	2	STRG.11537.3,blat.proc3825170.chain_369	2
scaffold_8	starts_in_intron	14390338	14390338	-	asmbl_52308	none	blat.proc3825152.chain_2658	1	STRG.10525.1,STRG.10525.2,blat.proc3825152.chain_2659,blat.proc3825152.chain_2661	4
scaffold_3	starts_in_intron	19885820	19885820	-	asmbl_39670,asmbl_39672	none	Trinity_GG_2243_c1_g1_i7,blat.proc3825150.chain_244,blat.proc3825150.chain_247	3	STRG.4100.1,STRG.4100.4,Trinity_GG_2243_c1_g1_i1,blat.proc3825150.chain_246,blat.proc3825150.chain_249	5
scaffold_18	starts_in_intron	5578608	5578608	-	asmbl_19861	none	blat.proc3825158.chain_2275	1	STRG.21311.1	1
scaffold_1	spliced_intron	20699413	20699481	+	asmbl_2648	none	STRG.1412.1,blat.proc3825164.chain_1500	2	STRG.1412.2,blat.proc3825164.chain_1501	2
scaffold_6	retained_intron	3778731	3778944	+	asmbl_46852,asmbl_46853,asmbl_46854	none	STRG.7375.2,Trinity_GG_21375_c0_g1_i7,blat.proc3825166.chain_3620,blat.proc3825166.chain_3621,blat.proc3825166.chain_3623,blat.proc3825166.chain_3624,blat.proc3825166.chain_3627	7	STRG.7375.1,STRG.7375.3,blat.proc3825166.chain_3622,blat.proc3825166.chain_3625	4
scaffold_11	skipped_exon	7924464	7925337	+	asmbl_5698	none	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3	STRG.13804.5,Trinity_GG_24903_c0_g1_i2,blat.proc3825170.chain_2323	3
scaffold_1	spliced_intron	2782343	2782775	-	asmbl_134	none	STRG.178.2,blat.proc3825148.chain_169	2	STRG.178.1,Trinity_GG_99_c0_g1_i1,blat.proc3825148.chain_167,blat.proc3825148.chain_168	4
scaffold_17	alt_acceptor	9832731	9832732	-	asmbl_18199,asmbl_18200,asmbl_18201	none	STRG.20598.2,STRG.20598.3,STRG.20598.5	3	STRG.20598.1,STRG.20598.4,blat.proc3825158.chain_1555,blat.proc3825158.chain_1556,blat.proc3825158.chain_1557,blat.proc3825158.chain_1558	6
scaffold_24	ends_in_intron	8739939	8739939	-	asmbl_33095	none	STRG.26891.1,Trinity_GG_15007_c0_g1_i3,blat.proc3825162.chain_180	3	blat.proc3825162.chain_184	1
scaffold_5	starts_in_intron	7707899	7707899	+	asmbl_45501	none	Trinity_GG_20669_c0_g1_i3,blat.proc3825166.chain_2366	2	STRG.6149.1,STRG.6149.2,blat.proc3825166.chain_2365	3
scaffold_25	spliced_intron	801994	802101	-	asmbl_34001,asmbl_34002,asmbl_34004	none	STRG.27136.1,STRG.27136.3,STRG.27136.4	3	STRG.27136.5,Trinity_GG_15207_c1_g1_i2,blat.proc3825162.chain_512	3
scaffold_6	retained_intron	13919016	13919128	-	asmbl_48955,asmbl_48960	none	STRG.8139.1,blat.proc3825152.chain_568,blat.proc3825152.chain_570	3	STRG.8139.2,blat.proc3825152.chain_569	2
scaffold_17	retained_intron	5710589	5710711	-	asmbl_17948,asmbl_17949,asmbl_17951	none	STRG.20274.2,STRG.20274.3,blat.proc3825158.chain_1286,blat.proc3825158.chain_1287,blat.proc3825158.chain_1288	5	STRG.20274.1	1
scaffold_24	alternate_exon	1910689	1910930	-	asmbl_32746	none	STRG.26422.4,blat.proc3825160.chain_3498	2	blat.proc3825160.chain_3501	1
scaffold_11	starts_in_intron	8104551	8104551	+	asmbl_5735	none	blat.proc3825170.chain_2348	1	STRG.13823.1,STRG.13823.2,STRG.13823.3,STRG.13823.4,blat.proc3825170.chain_2349,blat.proc3825170.chain_2350,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	8
scaffold_5	alternate_exon	6912896	6916733	+	asmbl_45457	none	STRG.6104.2,blat.proc3825166.chain_2287,blat.proc3825166.chain_2294	3	STRG.6104.1,Trinity_GG_20627_c0_g1_i4,blat.proc3825166.chain_2284	3
scaffold_11	retained_exon	3497229	3497549	+	asmbl_5439,asmbl_5441	none	STRG.13484.2,blat.proc3825170.chain_2033	2	STRG.13484.1	1
scaffold_9	retained_intron	6902533	6902622	-	asmbl_55089,asmbl_55091,asmbl_55092	none	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3394	4	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3389,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	5
scaffold_1	spliced_intron	12410452	12410980	+	asmbl_2211	none	STRG.855.1,Trinity_GG_17839_c0_g1_i2,blat.proc3825164.chain_1023	3	Trinity_GG_17839_c0_g1_i1,blat.proc3825164.chain_1024	2
scaffold_10	retained_intron	8895840	8895918	-	asmbl_4624,asmbl_4628,asmbl_4633	none	blat.proc3825154.chain_1265,blat.proc3825154.chain_1269,blat.proc3825154.chain_1274	3	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1275	10
scaffold_4	retained_intron	5651119	5651635	-	asmbl_42618,asmbl_42623	none	STRG.4472.2,blat.proc3825150.chain_658,blat.proc3825150.chain_668	3	STRG.4472.4,blat.proc3825150.chain_665	2
scaffold_5	retained_exon	14261869	14262430	+	asmbl_45919,asmbl_45920,asmbl_45921,asmbl_45923	none	STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	4	STRG.6638.1,STRG.6638.2,blat.proc3825166.chain_2785,blat.proc3825166.chain_2788	4
scaffold_20	alt_acceptor	6983136	6983137	-	asmbl_25861	none	STRG.23261.1	1	STRG.23261.3	1
scaffold_14	retained_intron	7506677	7507029	-	asmbl_13217,asmbl_13221	none	STRG.17196.2,blat.proc3825156.chain_1998	2	STRG.17196.1,STRG.17196.3,STRG.17196.4,blat.proc3825156.chain_1996,blat.proc3825156.chain_1997,blat.proc3825156.chain_1999,blat.proc3825156.chain_2000	7
scaffold_27	alt_acceptor	951087	951088	-	asmbl_36732	none	STRG.28590.2	1	STRG.28590.1,blat.proc3825162.chain_1838	2
scaffold_26	alt_acceptor	9607196	9607197	+	asmbl_35244,asmbl_35248	none	STRG.28513.1,STRG.28513.2,Trinity_GG_33085_c0_g1_i3,blat.proc3825178.chain_1633	4	STRG.28513.3,Trinity_GG_33085_c0_g1_i1,blat.proc3825178.chain_1632	3
scaffold_2	spliced_intron	4578060	4578717	+	asmbl_24359,asmbl_24360,asmbl_24365	none	STRG.1886.2,Trinity_GG_18341_c1_g1_i4,blat.proc3825164.chain_1977,blat.proc3825164.chain_1979,blat.proc3825164.chain_1980	5	STRG.1886.1,Trinity_GG_18341_c1_g1_i3,blat.proc3825164.chain_1978	3
scaffold_19	ends_in_intron	12468589	12468589	-	asmbl_22498	none	blat.proc3825158.chain_3394	1	STRG.22587.1,STRG.22587.2,blat.proc3825158.chain_3392,blat.proc3825158.chain_3393	4
scaffold_21	retained_intron	3112262	3112397	-	asmbl_27507,asmbl_27508	none	blat.proc3825160.chain_1061,blat.proc3825160.chain_1063	2	STRG.23940.1,blat.proc3825160.chain_1062,blat.proc3825160.chain_1064	3
scaffold_18	alt_donor	7219086	7219087	-	asmbl_19933	none	STRG.21423.2	1	STRG.21423.1	1
scaffold_15	retained_intron	11940228	11941598	-	asmbl_14541	none	blat.proc3825156.chain_3462	1	STRG.18636.2,blat.proc3825156.chain_3460	2
scaffold_11	alternate_exon	3091689	3092261	+	asmbl_5399	none	STRG.13431.2,blat.proc3825170.chain_1961	2	STRG.13431.3	1
scaffold_18	alt_donor	7795877	7795878	-	asmbl_19978	none	STRG.21484.2,Trinity_GG_12016_c0_g1_i2,blat.proc3825158.chain_2390	3	STRG.21484.1,Trinity_GG_12016_c0_g1_i1,blat.proc3825158.chain_2388	3
scaffold_9	alternate_exon	6905867	6907715	-	asmbl_55094	none	STRG.11202.2,blat.proc3825152.chain_3442	2	STRG.11202.1,Trinity_GG_6207_c0_g1_i1,Trinity_GG_6207_c0_g1_i5,blat.proc3825152.chain_3441,blat.proc3825152.chain_3443	5
scaffold_7	starts_in_intron	811132	811132	+	asmbl_49568	none	blat.proc3825168.chain_1128	1	STRG.8623.1,STRG.8623.2,blat.proc3825168.chain_1125,blat.proc3825168.chain_1127,blat.proc3825168.chain_1129,blat.proc3825168.chain_1130	6
scaffold_4	alt_acceptor	4378466	4378467	-	asmbl_42509	none	STRG.4339.1	1	STRG.4339.2,STRG.4339.3,blat.proc3825150.chain_577	3
scaffold_25	ends_in_intron	8668240	8668240	+	asmbl_33744	none	blat.proc3825178.chain_786	1	STRG.27689.1,STRG.27689.3,blat.proc3825178.chain_783,blat.proc3825178.chain_785	4
scaffold_9	starts_in_intron	9763944	9763944	+	asmbl_54251	none	Trinity_GG_23650_c0_g1_i2	1	STRG.11351.2,STRG.11351.3	2
scaffold_16	alt_acceptor	8591295	8591296	+	asmbl_16412,asmbl_16416,asmbl_16419,asmbl_16424	none	STRG.19490.2,STRG.19490.3,STRG.19490.8,blat.proc3825174.chain_371,blat.proc3825174.chain_372,blat.proc3825174.chain_373	6	STRG.19490.1,STRG.19490.7,blat.proc3825174.chain_375	3
scaffold_4	alternate_exon	13763733	13763849	-	asmbl_43003,asmbl_43007	none	STRG.4997.2,STRG.4997.3,blat.proc3825150.chain_1144	3	STRG.4997.1,blat.proc3825150.chain_1141,blat.proc3825150.chain_1143	3
scaffold_24	alt_donor	8747030	8747031	+	asmbl_32441	none	STRG.26888.1,Trinity_GG_32167_c0_g1_i1,blat.proc3825178.chain_75	3	STRG.26888.3	1
scaffold_4	alternate_exon	19605161	19605272	-	asmbl_43471	none	STRG.5550.4	1	STRG.5550.1,STRG.5550.2	2
scaffold_2	spliced_intron	9791919	9792309	+	asmbl_24685,asmbl_24686,asmbl_24687,asmbl_24690	none	STRG.2185.1,Trinity_GG_18541_c0_g1_i1,Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2361,blat.proc3825164.chain_2363,blat.proc3825164.chain_2364,blat.proc3825164.chain_2366	7	Trinity_GG_18541_c0_g1_i4,blat.proc3825164.chain_2362,blat.proc3825164.chain_2365	3
scaffold_12	spliced_intron	7974105	7974222	+	asmbl_7804,asmbl_7806	none	STRG.14862.1,blat.proc3825170.chain_3413,blat.proc3825170.chain_3415,blat.proc3825170.chain_3417	4	STRG.14862.3	1
scaffold_14	spliced_intron	4782236	4782441	-	asmbl_13071,asmbl_13072	none	STRG.17010.1,blat.proc3825156.chain_1840,blat.proc3825156.chain_1841	3	STRG.17010.2,STRG.17010.3	2
scaffold_16	retained_intron	1510085	1511404	+	asmbl_16082	none	STRG.19099.1,blat.proc3825174.chain_10	2	STRG.19099.2,blat.proc3825174.chain_11	2
scaffold_21	alternate_exon	7951624	7951761	-	asmbl_27874	none	STRG.24328.1,blat.proc3825160.chain_1476	2	STRG.24328.2	1
scaffold_3	starts_in_intron	2873324	2873324	+	asmbl_39925	none	Trinity_GG_19036_c0_g1_i3,blat.proc3825164.chain_3286	2	STRG.3047.1,blat.proc3825164.chain_3287	2
scaffold_18	skipped_exon	3916387	3918363	-	asmbl_19785	none	STRG.21203.5	1	STRG.21203.2,STRG.21203.3,STRG.21203.4,blat.proc3825158.chain_2160	4
scaffold_3	spliced_intron	7972688	7972773	+	asmbl_40190	none	STRG.3384.2	1	blat.proc3825164.chain_3590	1
scaffold_28	ends_in_intron	2724961	2724961	+	asmbl_37409,asmbl_37411	none	blat.proc3825178.chain_2681,blat.proc3825178.chain_2684	2	STRG.29459.1,STRG.29459.2	2
scaffold_22	alternate_exon	10321920	10322019	+	asmbl_30353	none	STRG.25386.2	1	blat.proc3825176.chain_2362	1
scaffold_14	retained_exon	9272349	9273607	-	asmbl_13364	none	STRG.17338.2,blat.proc3825156.chain_2207	2	STRG.17338.5	1
scaffold_24	starts_in_intron	8751263	8751263	-	asmbl_33107	none	blat.proc3825162.chain_245	1	STRG.26893.1,STRG.26893.2,blat.proc3825162.chain_242,blat.proc3825162.chain_243,blat.proc3825162.chain_244	5
scaffold_25	alt_acceptor	337823	337824	+	asmbl_33326	none	STRG.27077.1	1	STRG.27077.2	1
scaffold_27	retained_exon	2551118	2551162	-	asmbl_36829	none	STRG.28734.2,blat.proc3825162.chain_1984	2	STRG.28734.1,blat.proc3825162.chain_1985	2
scaffold_1	alt_donor	5996764	5996765	-	asmbl_309	none	STRG.404.3,blat.proc3825148.chain_400	2	blat.proc3825148.chain_402	1
scaffold_5	starts_in_intron	8539122	8539122	-	asmbl_44213	none	STRG.6198.2,blat.proc3825150.chain_2420	2	STRG.6198.1,STRG.6198.3,STRG.6198.4,STRG.6198.5,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419,blat.proc3825150.chain_2421,blat.proc3825150.chain_2423	8
scaffold_12	alt_acceptor	4756832	4756833	-	asmbl_8443	none	STRG.14654.2,blat.proc3825154.chain_3076	2	STRG.14654.1,STRG.14654.3,blat.proc3825154.chain_3075	3
scaffold_3	alternate_exon	3244021	3245728	+	asmbl_39946	none	STRG.3072.4	1	STRG.3072.5	1
scaffold_10	retained_exon	6052475	6052558	+	asmbl_3228,asmbl_3230	none	STRG.12435.3,STRG.12435.4	2	STRG.12435.2,blat.proc3825170.chain_1071	2
scaffold_3	ends_in_intron	16940969	16940969	-	asmbl_39522	none	blat.proc3825150.chain_59	1	STRG.3938.1,blat.proc3825150.chain_60	2
scaffold_2	alt_donor	8055708	8055709	-	asmbl_23306	none	blat.proc3825148.chain_2117	1	STRG.2094.1,STRG.2094.2,blat.proc3825148.chain_2119,blat.proc3825148.chain_2121	4
scaffold_8	alternate_exon	8172234	8172760	+	asmbl_53004	none	STRG.10103.2,blat.proc3825168.chain_2701	2	STRG.10103.3	1
scaffold_27	alt_acceptor	7522110	7522111	+	asmbl_36466	none	STRG.29117.3	1	STRG.29117.1,STRG.29117.2,blat.proc3825178.chain_2324	3
scaffold_5	alternate_exon	15683067	15683232	+	asmbl_46008	none	blat.proc3825166.chain_2858	1	blat.proc3825166.chain_2861	1
scaffold_17	retained_intron	7027645	7027894	-	asmbl_18021	none	STRG.20365.1,Trinity_GG_11419_c0_g1_i2,blat.proc3825158.chain_1348	3	blat.proc3825158.chain_1349	1
scaffold_9	starts_in_intron	14818302	14818302	-	asmbl_55495,asmbl_55496,asmbl_55497,asmbl_55499	none	STRG.11702.2,STRG.11702.4,STRG.11702.5,blat.proc3825154.chain_159,blat.proc3825154.chain_163,blat.proc3825154.chain_164	6	STRG.11702.1,STRG.11702.3,STRG.11702.6,blat.proc3825154.chain_160,blat.proc3825154.chain_161	5
scaffold_8	alt_donor	11464006	11464007	+	asmbl_53226	none	STRG.10352.3,blat.proc3825168.chain_2931	2	STRG.10352.2	1
scaffold_4	alternate_exon	19679197	19679289	+	asmbl_42155,asmbl_42156	none	STRG.5559.2,STRG.5559.3,Trinity_GG_20342_c0_g1_i2,Trinity_GG_20342_c0_g1_i3,blat.proc3825166.chain_1806,blat.proc3825166.chain_1807	6	STRG.5559.1	1
scaffold_8	alternate_exon	9864409	9868366	+	asmbl_53120,asmbl_53121	none	blat.proc3825168.chain_2819,blat.proc3825168.chain_2821	2	blat.proc3825168.chain_2815	1
scaffold_21	spliced_intron	2946480	2946674	-	asmbl_27492,asmbl_27493,asmbl_27495	none	STRG.23917.1,STRG.23917.2,STRG.23917.3,blat.proc3825160.chain_984,blat.proc3825160.chain_986,blat.proc3825160.chain_988	6	Trinity_GG_13293_c0_g1_i2,blat.proc3825160.chain_987	2
scaffold_2	alt_acceptor	14198789	14198790	-	asmbl_23574,asmbl_23575	none	STRG.2414.4,blat.proc3825148.chain_2405	2	STRG.2414.1,STRG.2414.3,blat.proc3825148.chain_2407	3
scaffold_25	alt_donor	9337552	9337553	+	asmbl_33808,asmbl_33809,asmbl_33811	none	STRG.27762.1,blat.proc3825178.chain_878,blat.proc3825178.chain_879,blat.proc3825178.chain_881	4	blat.proc3825178.chain_877,blat.proc3825178.chain_882	2
scaffold_25	alt_acceptor	6297869	6297870	-	asmbl_34344	none	blat.proc3825162.chain_903	1	STRG.27514.1,blat.proc3825162.chain_902,blat.proc3825162.chain_904	3
scaffold_23	retained_intron	8843715	8843755	+	asmbl_31787	none	STRG.26151.2,blat.proc3825176.chain_3130	2	STRG.26151.1	1
scaffold_9	spliced_intron	16561348	16562614	-	asmbl_55581,asmbl_55582,asmbl_55584,asmbl_55590,asmbl_55591	none	STRG.11806.2,STRG.11806.3,STRG.11806.4,blat.proc3825154.chain_267,blat.proc3825154.chain_272,blat.proc3825154.chain_274	6	STRG.11806.6,Trinity_GG_6524_c1_g1_i1,blat.proc3825154.chain_277	3
scaffold_25	alt_donor	3705287	3705288	-	asmbl_34145	none	STRG.27317.1,blat.proc3825162.chain_683	2	STRG.27317.2,blat.proc3825162.chain_684	2
scaffold_21	alt_donor	8541057	8541058	-	asmbl_27930	none	STRG.24387.3,blat.proc3825160.chain_1548	2	STRG.24387.2,blat.proc3825160.chain_1547,blat.proc3825160.chain_1549	3
scaffold_13	skipped_exon	7907506	7907925	+	asmbl_11081	none	STRG.16066.1	1	STRG.16066.2,Trinity_GG_26143_c0_g1_i1,blat.proc3825172.chain_838	3
scaffold_28	starts_in_intron	2651299	2651299	+	asmbl_37396	none	Trinity_GG_33659_c0_g1_i6,blat.proc3825178.chain_2672	2	STRG.29457.2	1
scaffold_9	alternate_exon	16566226	16566794	-	asmbl_55591	none	blat.proc3825154.chain_274	1	blat.proc3825154.chain_272,blat.proc3825154.chain_273	2
scaffold_19	alt_acceptor	13742672	13742673	+	asmbl_21883	none	STRG.22688.2,Trinity_GG_29834_c0_g1_i1,blat.proc3825174.chain_3681	3	STRG.22688.1,Trinity_GG_29834_c0_g1_i3,blat.proc3825174.chain_3682	3
scaffold_12	starts_in_intron	13165759	13165759	-	asmbl_8927	none	Trinity_GG_8504_c0_g1_i2,blat.proc3825154.chain_3725	2	STRG.15204.1,STRG.15204.2,blat.proc3825154.chain_3724	3
scaffold_12	ends_in_intron	10516522	10516522	-	asmbl_8757	none	blat.proc3825154.chain_3542	1	STRG.15019.1,blat.proc3825154.chain_3543	2
scaffold_23	starts_in_intron	5080665	5080665	-	asmbl_30882	none	blat.proc3825160.chain_3067	1	STRG.25891.1,blat.proc3825160.chain_3068	2
scaffold_7	ends_in_intron	12610333	12610333	-	asmbl_51252	none	blat.proc3825152.chain_1622	1	STRG.9368.1,blat.proc3825152.chain_1623	2
scaffold_16	alt_acceptor	14679042	14679043	+	asmbl_16704,asmbl_16706	none	STRG.19870.1,STRG.19870.2,blat.proc3825174.chain_753	3	blat.proc3825174.chain_754	1
scaffold_16	starts_in_intron	10417517	10417517	+	asmbl_16528	none	Trinity_GG_28062_c0_g1_i2,blat.proc3825174.chain_546	2	STRG.19612.1,Trinity_GG_28062_c0_g1_i1,blat.proc3825174.chain_545	3
scaffold_14	spliced_intron	11386909	11387002	-	asmbl_13476,asmbl_13477,asmbl_13479	none	STRG.17477.1,STRG.17477.2,blat.proc3825156.chain_2291,blat.proc3825156.chain_2292	4	blat.proc3825156.chain_2294	1
scaffold_7	alt_acceptor	806353	806354	+	asmbl_49562,asmbl_49564,asmbl_49565,asmbl_49566	none	STRG.8623.1,blat.proc3825168.chain_1125,blat.proc3825168.chain_1127,blat.proc3825168.chain_1129,blat.proc3825168.chain_1130	5	STRG.8623.2	1
scaffold_28	alt_acceptor	9565716	9565717	+	asmbl_37791	none	blat.proc3825178.chain_3096	1	STRG.29985.1	1
scaffold_1	retained_exon	3679503	3679991	+	asmbl_1625,asmbl_1626	none	STRG.242.1,STRG.242.2,blat.proc3825164.chain_367	3	STRG.242.3	1
scaffold_5	starts_in_intron	12661394	12661394	+	asmbl_45815	none	blat.proc3825166.chain_2640	1	STRG.6505.1,STRG.6505.2,STRG.6505.3,STRG.6505.4,blat.proc3825166.chain_2636,blat.proc3825166.chain_2637,blat.proc3825166.chain_2638,blat.proc3825166.chain_2639	8
scaffold_23	starts_in_intron	2628137	2628137	+	asmbl_31413	none	STRG.25731.2	1	STRG.25731.1,Trinity_GG_31521_c0_g1_i4,blat.proc3825176.chain_2694	3
scaffold_21	starts_in_intron	10568207	10568207	-	asmbl_28064	none	blat.proc3825160.chain_1653	1	STRG.24534.2	1
scaffold_12	skipped_exon	7171746	7173215	+	asmbl_7724	none	STRG.14794.1	1	STRG.14794.2,blat.proc3825170.chain_3303,blat.proc3825170.chain_3304,blat.proc3825170.chain_3305	4
scaffold_7	starts_in_intron	1233415	1233415	+	asmbl_49590,asmbl_49595	none	Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i17,blat.proc3825168.chain_1066,blat.proc3825168.chain_1074	4	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i16,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079,blat.proc3825168.chain_1080	13
scaffold_2	retained_intron	7988750	7988928	+	asmbl_24606	none	STRG.2092.1,Trinity_GG_18464_c0_g1_i1,blat.proc3825164.chain_2186	3	STRG.2092.2,Trinity_GG_18464_c0_g1_i2,blat.proc3825164.chain_2185	3
scaffold_17	ends_in_intron	9939979	9939979	+	asmbl_19131	none	blat.proc3825174.chain_1467	1	STRG.20612.1,blat.proc3825174.chain_1470,blat.proc3825174.chain_1471	3
scaffold_17	skipped_exon	13972254	13973688	-	asmbl_18397,asmbl_18399	none	STRG.20885.3,blat.proc3825158.chain_1834,blat.proc3825158.chain_1835	3	STRG.20885.1,blat.proc3825158.chain_1833	2
scaffold_15	alt_acceptor	3695204	3695205	-	asmbl_14113	none	STRG.18149.3	1	STRG.18149.2	1
scaffold_15	alt_acceptor	11402046	11402047	-	asmbl_14493	none	STRG.18606.5,blat.proc3825156.chain_3363	2	STRG.18606.3,blat.proc3825156.chain_3366	2
scaffold_9	spliced_intron	6902827	6902922	-	asmbl_55087,asmbl_55088	none	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	4	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3389,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3394	5
scaffold_3	alternate_exon	10937268	10937558	-	asmbl_39121,asmbl_39122,asmbl_39123	none	STRG.3545.1,STRG.3545.2,STRG.3545.4,blat.proc3825148.chain_3370,blat.proc3825148.chain_3371	5	STRG.3545.3	1
scaffold_28	retained_intron	5638196	5638636	-	asmbl_38309,asmbl_38310	none	STRG.29706.3,blat.proc3825162.chain_2859	2	STRG.29706.1,STRG.29706.2,STRG.29706.4,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854,blat.proc3825162.chain_2855,blat.proc3825162.chain_2858	7
scaffold_16	alt_acceptor	8506963	8506964	-	asmbl_17246	none	Trinity_GG_10906_c0_g1_i2,blat.proc3825158.chain_566	2	STRG.19479.1	1
scaffold_2	starts_in_intron	4179015	4179015	+	asmbl_24344	none	blat.proc3825164.chain_1962	1	STRG.1857.1,blat.proc3825164.chain_1963,blat.proc3825164.chain_1964	3
scaffold_1	skipped_exon	3679992	3680406	+	asmbl_1626	none	STRG.242.2,blat.proc3825164.chain_367	2	blat.proc3825164.chain_366,blat.proc3825164.chain_368	2
scaffold_17	alt_donor	4284455	4284456	-	asmbl_17847	none	blat.proc3825158.chain_1189	1	STRG.20187.1,blat.proc3825158.chain_1188,blat.proc3825158.chain_1190	3
scaffold_9	spliced_intron	16568288	16568413	+	asmbl_54598,asmbl_54599,asmbl_54600,asmbl_54602,asmbl_54603,asmbl_54604	none	STRG.11807.1,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i21,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_610,blat.proc3825170.chain_612,blat.proc3825170.chain_613,blat.proc3825170.chain_616,blat.proc3825170.chain_617	11	STRG.11807.2,Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_614	3
scaffold_17	starts_in_intron	675388	675388	+	asmbl_18557,asmbl_18558	none	blat.proc3825174.chain_804,blat.proc3825174.chain_805	2	STRG.19920.2	1
scaffold_26	skipped_exon	5983273	5983512	+	asmbl_35061,asmbl_35062	none	STRG.28312.1,Trinity_GG_32976_c0_g1_i4,blat.proc3825178.chain_1430,blat.proc3825178.chain_1433	4	blat.proc3825178.chain_1429,blat.proc3825178.chain_1431	2
scaffold_26	alt_donor	6351294	6351295	-	asmbl_35682	none	STRG.28335.5	1	STRG.28335.6	1
scaffold_1	retained_intron	9298014	9298117	+	asmbl_1975	none	Trinity_GG_17708_c0_g1_i1,blat.proc3825164.chain_771	2	STRG.629.1,STRG.629.2,Trinity_GG_17708_c0_g1_i2,Trinity_GG_17708_c0_g1_i5,blat.proc3825164.chain_768,blat.proc3825164.chain_770	6
scaffold_25	spliced_intron	4319009	4319168	+	asmbl_33489,asmbl_33490	none	STRG.27360.1,blat.proc3825178.chain_469	2	STRG.27360.2,STRG.27360.3,Trinity_GG_32398_c0_g1_i1,Trinity_GG_32398_c0_g1_i2,blat.proc3825178.chain_466,blat.proc3825178.chain_467,blat.proc3825178.chain_468	7
scaffold_6	starts_in_intron	10836755	10836755	-	asmbl_48716	none	Trinity_GG_4475_c0_g1_i2,blat.proc3825152.chain_285	2	STRG.7899.1,Trinity_GG_4475_c0_g1_i1,blat.proc3825152.chain_284	3
scaffold_22	spliced_intron	7884588	7884719	-	asmbl_29430,asmbl_29431	none	STRG.25144.1,blat.proc3825160.chain_2297	2	blat.proc3825160.chain_2295,blat.proc3825160.chain_2298	2
scaffold_13	alt_donor	6604129	6604130	+	asmbl_10945,asmbl_10946,asmbl_10948,asmbl_10950	none	STRG.15951.1,STRG.15951.2,STRG.15951.3,STRG.15951.4,Trinity_GG_26063_c0_g1_i2,Trinity_GG_26063_c0_g1_i3,blat.proc3825172.chain_674,blat.proc3825172.chain_675,blat.proc3825172.chain_676	9	Trinity_GG_26063_c0_g1_i4,blat.proc3825172.chain_677	2
scaffold_22	retained_exon	4434690	4434788	-	asmbl_29267	none	Trinity_GG_13911_c0_g1_i2,blat.proc3825160.chain_2090	2	STRG.24870.1,Trinity_GG_13911_c0_g1_i1,blat.proc3825160.chain_2091	3
scaffold_1	alt_acceptor	4590159	4590160	-	asmbl_214	none	STRG.284.2	1	STRG.284.1,STRG.284.3,Trinity_GG_101_c0_g1_i1,blat.proc3825148.chain_171	4
scaffold_13	alt_acceptor	5948289	5948290	-	asmbl_9758,asmbl_9760	none	STRG.15911.2,STRG.15911.4	2	STRG.15911.1,STRG.15911.3,blat.proc3825156.chain_755,blat.proc3825156.chain_756	4
scaffold_5	alt_donor	10600223	10600224	-	asmbl_44372	none	STRG.6346.2,blat.proc3825150.chain_2547	2	STRG.6346.1,STRG.6346.3,blat.proc3825150.chain_2546,blat.proc3825150.chain_2548	4
scaffold_18	ends_in_intron	5729842	5729842	+	asmbl_20599	none	blat.proc3825174.chain_2279	1	STRG.21323.1,STRG.21323.2,Trinity_GG_29058_c0_g2_i1,Trinity_GG_29058_c0_g2_i2,blat.proc3825174.chain_2280,blat.proc3825174.chain_2281	6
scaffold_2	retained_intron	8063944	8064058	+	asmbl_24611	none	Trinity_GG_18492_c0_g1_i1,blat.proc3825164.chain_2260	2	STRG.2102.1,blat.proc3825164.chain_2261	2
scaffold_13	alternate_exon	15037855	15038095	-	asmbl_10224	none	blat.proc3825156.chain_1378	1	STRG.16553.1,blat.proc3825156.chain_1380	2
scaffold_28	spliced_intron	5611216	5611353	-	asmbl_38301,asmbl_38304	none	STRG.29697.2,STRG.29697.6,Trinity_GG_16664_c0_g1_i9,blat.proc3825162.chain_2897	4	STRG.29697.1,STRG.29697.4,STRG.29697.5,blat.proc3825162.chain_2899,blat.proc3825162.chain_2901	5
scaffold_4	retained_exon	6704806	6705397	+	asmbl_41422,asmbl_41423	none	STRG.4531.1,STRG.4531.2,blat.proc3825166.chain_909	3	STRG.4531.3	1
scaffold_8	alternate_exon	16081645	16081822	-	asmbl_52361	none	STRG.10591.2	1	STRG.10591.1,STRG.10591.3,blat.proc3825152.chain_2763,blat.proc3825152.chain_2764	4
scaffold_1	retained_intron	907269	907398	-	asmbl_34	none	STRG.48.2	1	STRG.48.3	1
scaffold_15	alt_donor	4231266	4231267	+	asmbl_15127	none	Trinity_GG_27280_c0_g1_i5,blat.proc3825172.chain_2839	2	STRG.18172.2,blat.proc3825172.chain_2838,blat.proc3825172.chain_2843	3
scaffold_5	starts_in_intron	15678456	15678456	+	asmbl_46007	none	blat.proc3825166.chain_2859	1	STRG.6761.1,blat.proc3825166.chain_2861,blat.proc3825166.chain_2862	3
scaffold_1	starts_in_intron	9299187	9299187	-	asmbl_532	none	Trinity_GG_320_c0_g1_i1,blat.proc3825148.chain_577	2	STRG.630.1	1
scaffold_11	retained_intron	171562	171671	+	asmbl_5262	none	blat.proc3825170.chain_1818	1	STRG.13244.2,blat.proc3825170.chain_1820	2
scaffold_5	alt_donor	938690	938691	-	asmbl_43790	none	STRG.5637.1,blat.proc3825150.chain_1831	2	STRG.5637.2	1
scaffold_9	alt_acceptor	12480608	12480609	-	asmbl_55378	none	STRG.11563.2	1	STRG.11563.1,blat.proc3825152.chain_3742	2
scaffold_23	retained_exon	3448205	3448277	-	asmbl_30793	none	STRG.25764.2,Trinity_GG_14434_c0_g1_i3	2	STRG.25764.1	1
scaffold_18	spliced_intron	5905665	5905784	-	asmbl_19876,asmbl_19877,asmbl_19879	none	STRG.21337.2,STRG.21337.3,STRG.21337.4	3	blat.proc3825158.chain_2262	1
scaffold_25	alt_donor	1439395	1439396	+	asmbl_33375	none	STRG.27180.2,Trinity_GG_32306_c0_g1_i1,blat.proc3825178.chain_327	3	STRG.27180.1,STRG.27180.3,blat.proc3825178.chain_326	3
scaffold_6	spliced_intron	10724279	10724368	+	asmbl_47290,asmbl_47291	none	STRG.7892.1,STRG.7892.2,blat.proc3825168.chain_333,blat.proc3825168.chain_334	4	STRG.7892.3,blat.proc3825168.chain_335	2
scaffold_16	alternate_exon	441636	441991	-	asmbl_16882	none	STRG.19042.3,blat.proc3825158.chain_210	2	blat.proc3825158.chain_209	1
scaffold_15	starts_in_intron	11138020	11138020	-	asmbl_14481	none	blat.proc3825156.chain_3387	1	blat.proc3825156.chain_3380,blat.proc3825156.chain_3381,blat.proc3825156.chain_3382,blat.proc3825156.chain_3383,blat.proc3825156.chain_3384,blat.proc3825156.chain_3385,blat.proc3825156.chain_3386	7
scaffold_13	spliced_intron	6762160	6762916	+	asmbl_10971	none	blat.proc3825172.chain_649	1	STRG.15967.1,STRG.15967.2,Trinity_GG_26054_c0_g1_i2,blat.proc3825172.chain_650,blat.proc3825172.chain_651	5
scaffold_8	spliced_intron	16576119	16576384	-	asmbl_52429,asmbl_52431	none	STRG.10634.1,STRG.10634.2,blat.proc3825152.chain_2879	3	blat.proc3825152.chain_2880	1
scaffold_17	alt_acceptor	9240530	9240531	+	asmbl_19071	none	STRG.20548.1,Trinity_GG_28574_c0_g1_i2,blat.proc3825174.chain_1421	3	STRG.20548.2,Trinity_GG_28574_c0_g1_i3,blat.proc3825174.chain_1423	3
scaffold_19	ends_in_intron	8616316	8616316	+	asmbl_21535	none	blat.proc3825174.chain_3285	1	STRG.22313.1	1
scaffold_10	alt_acceptor	13046467	13046468	-	asmbl_4851,asmbl_4853	none	STRG.12914.2,blat.proc3825154.chain_1517	2	STRG.12914.1,blat.proc3825154.chain_1518	2
scaffold_14	spliced_intron	151364	151716	-	asmbl_12779,asmbl_12782	none	STRG.16711.6,blat.proc3825156.chain_1518	2	STRG.16711.4,STRG.16711.5,blat.proc3825156.chain_1519,blat.proc3825156.chain_1520	4
scaffold_19	spliced_intron	12822377	12822631	-	asmbl_22545,asmbl_22546,asmbl_22548,asmbl_22549,asmbl_22554	none	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3412,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	7	blat.proc3825158.chain_3409	1
scaffold_8	skipped_exon	16503765	16504947	-	asmbl_52405,asmbl_52413,asmbl_52416,asmbl_52419,asmbl_52420,asmbl_52421	none	STRG.10629.4,STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2931,blat.proc3825152.chain_2934,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	8	STRG.10629.1,blat.proc3825152.chain_2929,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	6
scaffold_7	alt_acceptor	11873338	11873339	-	asmbl_51172,asmbl_51175	none	STRG.9306.2,Trinity_GG_5251_c0_g1_i3,blat.proc3825152.chain_1679	3	STRG.9306.1	1
scaffold_8	spliced_intron	16502745	16503680	-	asmbl_52403,asmbl_52409,asmbl_52411,asmbl_52413,asmbl_52414,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52421,asmbl_52422	none	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,Trinity_GG_5934_c0_g1_i12,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2935,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	13	Trinity_GG_5934_c0_g1_i21,blat.proc3825152.chain_2928,blat.proc3825152.chain_2938	3
scaffold_9	alt_acceptor	6745775	6745776	-	asmbl_55072,asmbl_55073,asmbl_55075	none	STRG.11188.1,STRG.11188.3,blat.proc3825152.chain_3414,blat.proc3825152.chain_3416,blat.proc3825152.chain_3417	5	STRG.11188.2	1
scaffold_10	alt_donor	4057950	4057951	-	asmbl_4251	none	STRG.12246.7,Trinity_GG_6843_c2_g1_i1,blat.proc3825154.chain_821,blat.proc3825154.chain_827	4	STRG.12246.6,blat.proc3825154.chain_823	2
scaffold_3	retained_exon	19407400	19407526	-	asmbl_39651	none	STRG.4086.2	1	STRG.4086.5,blat.proc3825150.chain_252	2
scaffold_1	starts_in_intron	12177689	12177689	+	asmbl_2193	none	Trinity_GG_17835_c0_g1_i6,blat.proc3825164.chain_1015	2	STRG.839.1,STRG.839.2,STRG.839.3,STRG.839.4,blat.proc3825164.chain_1012,blat.proc3825164.chain_1013,blat.proc3825164.chain_1014,blat.proc3825164.chain_1016	8
scaffold_39	starts_in_intron	16069	16069	+	asmbl_41065	none	Trinity_GG_33942_c0_g1_i2,blat.proc3825178.chain_3169	2	STRG.30038.1,blat.proc3825178.chain_3170	2
scaffold_7	spliced_intron	271299	271404	+	asmbl_49544	none	STRG.8598.4	1	STRG.8598.1,STRG.8598.3,STRG.8598.6,blat.proc3825168.chain_1053	4
scaffold_24	skipped_exon	4319025	4319782	+	asmbl_32189	none	STRG.26600.1	1	STRG.26600.2,STRG.26600.3	2
scaffold_14	retained_exon	3156649	3156720	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11915,asmbl_11917,asmbl_11918,asmbl_11921,asmbl_11924	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i12,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,blat.proc3825172.chain_1601,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1608,blat.proc3825172.chain_1609,blat.proc3825172.chain_1611	13	Trinity_GG_26576_c0_g1_i11,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1605,blat.proc3825172.chain_1607,blat.proc3825172.chain_1610	8
scaffold_7	alt_donor	12559572	12559573	-	asmbl_51246	none	STRG.9364.2	1	STRG.9364.1,blat.proc3825152.chain_1718	2
scaffold_9	retained_intron	6903131	6903325	-	asmbl_55089,asmbl_55090,asmbl_55091	none	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3389,blat.proc3825152.chain_3390,blat.proc3825152.chain_3394	4	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3391,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	5
scaffold_2	skipped_exon	6900364	6901550	+	asmbl_24508,asmbl_24512,asmbl_24515	none	STRG.2036.4,Trinity_GG_18453_c0_g1_i8,blat.proc3825164.chain_2156,blat.proc3825164.chain_2159	4	STRG.2036.1,STRG.2036.2,STRG.2036.3,blat.proc3825164.chain_2155,blat.proc3825164.chain_2158,blat.proc3825164.chain_2160	6
scaffold_5	alt_donor	18222670	18222671	+	asmbl_46218,asmbl_46220,asmbl_46221	none	STRG.6959.2,STRG.6959.3,STRG.6959.4,blat.proc3825166.chain_3167	4	STRG.6959.1,STRG.6959.5,blat.proc3825166.chain_3166	3
scaffold_9	retained_exon	3387786	3387899	+	asmbl_53901	none	blat.proc3825168.chain_3472	1	STRG.10946.1,Trinity_GG_23401_c0_g1_i1,blat.proc3825168.chain_3471	3
scaffold_8	retained_intron	18573669	18573909	-	asmbl_52557	none	STRG.10754.1,Trinity_GG_5945_c0_g1_i4,blat.proc3825152.chain_2965	3	STRG.10754.2,STRG.10754.3,Trinity_GG_5945_c0_g1_i1,blat.proc3825152.chain_2963	4
scaffold_18	retained_intron	5905665	5905784	-	asmbl_19878	none	blat.proc3825158.chain_2262	1	STRG.21337.2,STRG.21337.3,STRG.21337.4	3
scaffold_3	alt_acceptor	15785749	15785750	-	asmbl_39449	none	STRG.3859.1,blat.proc3825148.chain_3733	2	STRG.3859.2	1
scaffold_500	spliced_intron	2902	3472	+	asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492	none	STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6	4	STRG.30357.1,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445,blat.proc3825178.chain_3446	4
scaffold_5	starts_in_intron	6290915	6290915	+	asmbl_45421	none	blat.proc3825166.chain_2290	1	STRG.6040.1,STRG.6040.2,Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	4
scaffold_26	alternate_exon	5562325	5565314	+	asmbl_35019	none	STRG.28266.1,Trinity_GG_32902_c0_g1_i1,blat.proc3825178.chain_1299	3	STRG.28266.2,blat.proc3825178.chain_1302	2
scaffold_8	retained_exon	739261	739422	+	asmbl_52663	none	STRG.9729.1	1	blat.proc3825168.chain_2237	1
scaffold_5	skipped_exon	16518924	16519444	-	asmbl_44750	none	STRG.6842.1,blat.proc3825150.chain_3017	2	STRG.6842.2,STRG.6842.4,blat.proc3825150.chain_3015	3
scaffold_14	skipped_exon	15940465	15942993	+	asmbl_12652	none	STRG.17839.2	1	STRG.17839.1	1
scaffold_24	retained_exon	7099438	7099912	+	asmbl_32368	none	STRG.26761.1	1	STRG.26761.2	1
scaffold_19	retained_intron	13637265	13638466	-	asmbl_22666	none	STRG.22686.2,Trinity_GG_12640_c0_g2_i1,blat.proc3825158.chain_3525,blat.proc3825158.chain_3526	4	STRG.22686.1	1
scaffold_19	alt_acceptor	8339617	8339618	+	asmbl_21515	none	STRG.22292.1	1	STRG.22292.2,blat.proc3825158.chain_3094,blat.proc3825174.chain_3198	3
scaffold_15	alt_acceptor	15435821	15435822	-	asmbl_14785,asmbl_14788	none	blat.proc3825156.chain_3728,blat.proc3825156.chain_3729	2	STRG.18932.2,blat.proc3825156.chain_3727,blat.proc3825156.chain_3733	3
scaffold_14	alt_acceptor	7508205	7508206	-	asmbl_13219,asmbl_13220	none	STRG.17196.3,blat.proc3825156.chain_2000	2	STRG.17196.1,blat.proc3825156.chain_1996,blat.proc3825156.chain_1998,blat.proc3825156.chain_1999	4
scaffold_21	spliced_intron	5468667	5468783	-	asmbl_27657	none	STRG.24076.1,blat.proc3825160.chain_1155	2	Trinity_GG_13397_c0_g1_i1,blat.proc3825160.chain_1156	2
scaffold_10	alt_donor	3928784	3928785	-	asmbl_4240	none	STRG.12235.4,blat.proc3825154.chain_798	2	STRG.12235.2,STRG.12235.5,blat.proc3825154.chain_800	3
scaffold_25	spliced_intron	3084202	3084656	-	asmbl_34091	none	STRG.27251.1	1	STRG.27251.4,Trinity_GG_15234_c0_g1_i6,blat.proc3825162.chain_558	3
scaffold_25	retained_exon	4117978	4118122	+	asmbl_33474,asmbl_33476	none	STRG.27345.1,STRG.27345.2,blat.proc3825178.chain_442	3	blat.proc3825178.chain_441	1
scaffold_10	alt_acceptor	11971271	11971272	+	asmbl_3508,asmbl_3510,asmbl_3515	none	STRG.12838.1,STRG.12838.3,STRG.12838.6,Trinity_GG_24389_c1_g1_i1	4	STRG.12838.5	1
scaffold_26	spliced_intron	9773180	9773315	+	asmbl_35257,asmbl_35260,asmbl_35261,asmbl_35262,asmbl_35263,asmbl_35264,asmbl_35265,asmbl_35266,asmbl_35267	none	STRG.28516.1,STRG.28516.2,STRG.28516.3,STRG.28516.5,STRG.28516.6,STRG.28516.7,blat.proc3825178.chain_1636,blat.proc3825178.chain_1637,blat.proc3825178.chain_1638,blat.proc3825178.chain_1640,blat.proc3825178.chain_1642	11	STRG.28516.4,Trinity_GG_33086_c0_g1_i6,blat.proc3825178.chain_1639,blat.proc3825178.chain_1641	4
scaffold_8	alt_acceptor	10863196	10863197	-	asmbl_52123	none	STRG.10312.2	1	STRG.10312.1,STRG.10312.3,blat.proc3825152.chain_2589	3
scaffold_19	starts_in_intron	13006628	13006628	+	asmbl_21840	none	Trinity_GG_29821_c0_g1_i8,blat.proc3825174.chain_3644	2	STRG.22623.1,STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i10,Trinity_GG_29821_c0_g1_i11,Trinity_GG_29821_c0_g1_i5,Trinity_GG_29821_c0_g1_i6,blat.proc3825174.chain_3643,blat.proc3825174.chain_3645,blat.proc3825174.chain_3646,blat.proc3825174.chain_3649,blat.proc3825174.chain_3650	12
scaffold_28	alt_acceptor	5914962	5914963	+	asmbl_37610,asmbl_37611	none	STRG.29720.1,STRG.29720.2,Trinity_GG_33778_c0_g1_i3,blat.proc3825178.chain_2889	4	STRG.29720.3,Trinity_GG_33778_c0_g1_i1,blat.proc3825178.chain_2888	3
scaffold_16	alternate_exon	7216375	7228463	-	asmbl_17176	none	STRG.19399.1	1	STRG.19399.4	1
scaffold_19	retained_intron	12822372	12822631	-	asmbl_22553	none	blat.proc3825158.chain_3409	1	blat.proc3825158.chain_3413	1
scaffold_21	alt_donor	11346263	11346264	-	asmbl_28121	none	STRG.24614.1	1	STRG.24614.2	1
scaffold_5	alternate_exon	5511134	5511283	+	asmbl_45346	none	STRG.5977.3	1	blat.proc3825166.chain_2206	1
scaffold_25	retained_intron	3084205	3084650	-	asmbl_34086	none	STRG.27251.4,Trinity_GG_15234_c0_g1_i6,blat.proc3825162.chain_558	3	STRG.27251.3	1
scaffold_20	ends_in_intron	1094687	1094687	-	asmbl_25531	none	Trinity_GG_12699_c0_g1_i2,blat.proc3825158.chain_3617	2	STRG.22817.1,blat.proc3825158.chain_3618	2
scaffold_1	alternate_exon	849738	850047	+	asmbl_1418,asmbl_1420	none	STRG.42.2,STRG.42.5,Trinity_GG_17343_c0_g1_i1,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_126,blat.proc3825164.chain_127	6	STRG.42.3	1
scaffold_18	retained_intron	6425925	6426952	+	asmbl_20674	none	STRG.21370.2,Trinity_GG_29108_c0_g1_i1,blat.proc3825174.chain_2390	3	STRG.21370.1,Trinity_GG_29108_c0_g1_i2,blat.proc3825174.chain_2391	3
scaffold_21	alt_donor	730676	730677	+	asmbl_28294	none	STRG.23764.4	1	STRG.23764.2,STRG.23764.5,Trinity_GG_30474_c0_g1_i2,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_969,blat.proc3825176.chain_971	6
scaffold_2	alt_donor	796761	796762	+	asmbl_24105	none	STRG.1558.1,Trinity_GG_18207_c0_g1_i2	2	STRG.1558.2	1
scaffold_15	starts_in_intron	12599940	12599940	-	asmbl_14589	none	blat.proc3825156.chain_3573	1	STRG.18712.1,blat.proc3825156.chain_3577	2
scaffold_1	spliced_intron	10414454	10414944	-	asmbl_583	none	STRG.678.1,blat.proc3825148.chain_716	2	STRG.678.3,blat.proc3825148.chain_717	2
scaffold_7	alt_donor	9788535	9788536	-	asmbl_51069	none	STRG.9171.1	1	STRG.9171.2	1
scaffold_13	alternate_exon	7452777	7452804	+	asmbl_11057	none	STRG.16041.1	1	STRG.16041.2	1
scaffold_5	alt_acceptor	7315370	7315371	+	asmbl_45484	none	STRG.6126.1,blat.proc3825166.chain_2342	2	STRG.6126.2,blat.proc3825166.chain_2343	2
scaffold_14	alt_donor	10682417	10682418	-	asmbl_13436,asmbl_13438	none	STRG.17420.1,STRG.17420.2,blat.proc3825156.chain_2252,blat.proc3825156.chain_2253	4	STRG.17420.3	1
scaffold_19	starts_in_intron	12491620	12491620	+	asmbl_21810,asmbl_21815	none	blat.proc3825174.chain_3623,blat.proc3825174.chain_3628	2	STRG.22590.1,STRG.22590.3,STRG.22590.4,blat.proc3825174.chain_3624,blat.proc3825174.chain_3625,blat.proc3825174.chain_3626	6
scaffold_16	ends_in_intron	11395752	11395752	-	asmbl_17344,asmbl_17346	none	STRG.19673.7,Trinity_GG_11017_c0_g1_i1,blat.proc3825158.chain_728	3	STRG.19673.1,STRG.19673.3,STRG.19673.4,STRG.19673.6,blat.proc3825158.chain_729	5
scaffold_26	alternate_exon	8586775	8586872	-	asmbl_35738	none	STRG.28448.2	1	STRG.28448.1,Trinity_GG_15890_c0_g1_i1,blat.proc3825162.chain_1628	3
scaffold_2	retained_intron	8148213	8148395	-	asmbl_23316	none	Trinity_GG_1167_c0_g1_i2,blat.proc3825148.chain_2124	2	STRG.2099.1,blat.proc3825148.chain_2126	2
scaffold_5	spliced_intron	8538359	8538561	-	asmbl_44212,asmbl_44213,asmbl_44214,asmbl_44215,asmbl_44216,asmbl_44217,asmbl_44218	none	STRG.6198.1,STRG.6198.2,STRG.6198.3,STRG.6198.4,STRG.6198.5,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419,blat.proc3825150.chain_2420,blat.proc3825150.chain_2421,blat.proc3825150.chain_2423	10	Trinity_GG_3502_c0_g1_i2,blat.proc3825150.chain_2417	2
scaffold_2	retained_intron	13401811	13401905	+	asmbl_24848	none	STRG.2364.2,Trinity_GG_18638_c0_g1_i1,blat.proc3825164.chain_2548	3	STRG.2364.1,blat.proc3825164.chain_2547	2
scaffold_6	alternate_exon	12632330	12633966	+	asmbl_47423	none	STRG.8022.2,blat.proc3825168.chain_423	2	STRG.8022.3,Trinity_GG_21679_c0_g1_i3,blat.proc3825168.chain_424	3
scaffold_10	alt_acceptor	378915	378916	-	asmbl_3946	none	STRG.11922.3,Trinity_GG_6631_c0_g1_i7,blat.proc3825154.chain_458	3	STRG.11922.4,blat.proc3825154.chain_462	2
scaffold_7	spliced_intron	2509920	2510092	-	asmbl_50757	none	STRG.8686.1,Trinity_GG_4956_c0_g1_i2,blat.proc3825152.chain_1161	3	Trinity_GG_4956_c0_g1_i1,blat.proc3825152.chain_1163	2
scaffold_12	ends_in_intron	12388348	12388348	+	asmbl_7998	none	blat.proc3825170.chain_3638	1	STRG.15149.3	1
scaffold_3	retained_intron	6046201	6046335	-	asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38883	none	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.7	4	STRG.3259.6	1
scaffold_19	alt_acceptor	8230526	8230527	+	asmbl_21500	none	STRG.22274.1,Trinity_GG_29602_c0_g1_i1,blat.proc3825174.chain_3250	3	STRG.22274.2	1
scaffold_10	spliced_intron	1425641	1425720	+	asmbl_2932,asmbl_2938,asmbl_2939	none	STRG.12016.3,Trinity_GG_23995_c0_g1_i4,blat.proc3825170.chain_761,blat.proc3825170.chain_765	4	STRG.12016.2,Trinity_GG_23995_c0_g1_i3,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_759,blat.proc3825170.chain_762,blat.proc3825170.chain_764	6
scaffold_26	starts_in_intron	5761124	5761124	-	asmbl_35619	none	STRG.28275.1,blat.proc3825162.chain_1488	2	STRG.28275.2	1
scaffold_2	spliced_intron	17237710	17237871	-	asmbl_23719	none	STRG.2624.1,blat.proc3825148.chain_2575	2	Trinity_GG_1438_c0_g1_i2,blat.proc3825148.chain_2576	2
scaffold_26	starts_in_intron	1549117	1549117	-	asmbl_35405	none	blat.proc3825162.chain_1224	1	STRG.27918.1,blat.proc3825162.chain_1223	2
scaffold_26	spliced_intron	5483268	5483396	+	asmbl_34994,asmbl_34995,asmbl_34996,asmbl_34997,asmbl_34998	none	STRG.28252.1,STRG.28252.2,STRG.28252.3,STRG.28252.4,Trinity_GG_32931_c0_g1_i1	5	Trinity_GG_32931_c0_g1_i7,blat.proc3825178.chain_1352	2
scaffold_20	alternate_exon	5546891	5549902	-	asmbl_25769	none	STRG.23182.2	1	STRG.23182.4,blat.proc3825160.chain_219	2
scaffold_9	spliced_intron	11021992	11022126	-	asmbl_55266,asmbl_55267	none	STRG.11409.2,blat.proc3825152.chain_3518	2	STRG.11409.1,blat.proc3825152.chain_3516,blat.proc3825152.chain_3517	3
scaffold_11	alt_donor	7924464	7924465	+	asmbl_5698	none	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3	STRG.13804.3,STRG.13804.5,STRG.13804.6,Trinity_GG_24903_c0_g1_i2,blat.proc3825170.chain_2323	5
scaffold_10	spliced_intron	9041054	9041325	+	asmbl_3358	none	STRG.12653.1,blat.proc3825170.chain_1272	2	blat.proc3825170.chain_1273	1
scaffold_20	retained_intron	7473157	7473239	-	asmbl_25913	none	blat.proc3825160.chain_459	1	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_461,blat.proc3825160.chain_462,blat.proc3825160.chain_463,blat.proc3825160.chain_465,blat.proc3825160.chain_466,blat.proc3825160.chain_467	8
scaffold_10	alt_acceptor	12886878	12886879	+	asmbl_3551	none	STRG.12880.1,Trinity_GG_24421_c0_g1_i3,blat.proc3825170.chain_1510	3	Trinity_GG_24421_c0_g1_i2	1
scaffold_2	retained_intron	13754062	13754214	-	asmbl_23525	none	blat.proc3825148.chain_2330	1	STRG.2373.1,blat.proc3825148.chain_2331,blat.proc3825148.chain_2332	3
scaffold_8	alt_acceptor	4194632	4194633	-	asmbl_51759	none	blat.proc3825152.chain_2109	1	STRG.9896.2	1
scaffold_9	alternate_exon	4210075	4210172	+	asmbl_53947	none	STRG.11032.3	1	STRG.11032.2	1
scaffold_25	alt_acceptor	5827048	5827049	-	asmbl_34293,asmbl_34294	none	blat.proc3825162.chain_879,blat.proc3825162.chain_880	2	blat.proc3825162.chain_881	1
scaffold_15	alt_acceptor	2071378	2071379	-	asmbl_13989	none	STRG.18002.1	1	STRG.18002.2	1
scaffold_14	alt_acceptor	6771293	6771294	-	asmbl_13157,asmbl_13160	none	STRG.17120.1,blat.proc3825156.chain_1932,blat.proc3825156.chain_1934	3	STRG.17120.2,blat.proc3825156.chain_1933	2
scaffold_17	alt_acceptor	11035668	11035669	-	asmbl_18260,asmbl_18264	none	STRG.20664.4,blat.proc3825158.chain_1638,blat.proc3825158.chain_1639	3	STRG.20664.3	1
scaffold_20	skipped_exon	12095031	12095997	-	asmbl_26223	none	STRG.23707.1	1	STRG.23707.3,blat.proc3825160.chain_787	2
scaffold_2	alt_donor	3373616	3373617	+	asmbl_24279	none	STRG.1773.2,blat.proc3825164.chain_1895	2	STRG.1773.3	1
scaffold_2	alternate_exon	3331777	3331841	-	asmbl_22972	none	STRG.1763.2	1	STRG.1763.1,blat.proc3825148.chain_1708	2
scaffold_21	alternate_exon	11259274	11259747	-	asmbl_28105	none	STRG.24598.2	1	STRG.24598.1	1
scaffold_11	alternate_exon	3495172	3497357	+	asmbl_5438	none	blat.proc3825170.chain_2034	1	STRG.13484.1	1
scaffold_4	skipped_exon	16881837	16883545	-	asmbl_43232	none	STRG.5278.1,Trinity_GG_2939_c0_g1_i1,blat.proc3825150.chain_1434	3	STRG.5278.2	1
scaffold_14	retained_intron	151803	151904	-	asmbl_12777,asmbl_12781	none	STRG.16711.4,blat.proc3825156.chain_1519,blat.proc3825156.chain_1520	3	STRG.16711.5,STRG.16711.6,blat.proc3825156.chain_1518	3
scaffold_15	spliced_intron	15413654	15413826	+	asmbl_15775,asmbl_15781,asmbl_15783	none	STRG.18953.3,STRG.18953.4,blat.proc3825172.chain_3610	3	STRG.18953.1,STRG.18953.2,STRG.18953.5,blat.proc3825172.chain_3607,blat.proc3825172.chain_3608,blat.proc3825172.chain_3611,blat.proc3825172.chain_3612	7
scaffold_5	alt_acceptor	4696592	4696593	+	asmbl_45285	none	blat.proc3825166.chain_2149	1	STRG.5925.2,STRG.5925.3,blat.proc3825166.chain_2150	3
scaffold_10	spliced_intron	3928652	3928827	-	asmbl_4241,asmbl_4246	none	STRG.12235.2,STRG.12235.5,blat.proc3825154.chain_800	3	STRG.12235.3	1
scaffold_5	spliced_intron	6835252	6835402	-	asmbl_44150	none	STRG.6090.1,blat.proc3825150.chain_2309	2	STRG.6090.2	1
scaffold_17	alt_acceptor	12221211	12221212	-	asmbl_18321	none	STRG.20758.2	1	STRG.20758.1,blat.proc3825158.chain_1699	2
scaffold_19	alt_donor	12393050	12393051	-	asmbl_22480	none	STRG.22570.3,blat.proc3825158.chain_3327	2	STRG.22570.1,STRG.22570.2,blat.proc3825158.chain_3326,blat.proc3825158.chain_3328,blat.proc3825158.chain_3329,blat.proc3825158.chain_3330	6
scaffold_12	alt_acceptor	3803787	3803788	+	asmbl_7574	none	STRG.14588.2	1	STRG.14588.3,blat.proc3825170.chain_3154	2
scaffold_13	alt_donor	3699681	3699682	+	asmbl_10725	none	STRG.15685.2	1	STRG.15685.1,STRG.15685.3,Trinity_GG_25876_c0_g1_i1,blat.proc3825172.chain_336	4
scaffold_18	retained_intron	12400319	12400383	-	asmbl_20144,asmbl_20145	none	STRG.21709.1,STRG.21709.4	2	blat.proc3825158.chain_2583	1
scaffold_10	alternate_exon	1165285	1165363	+	asmbl_2912	none	STRG.12004.3,blat.proc3825170.chain_745	2	STRG.12004.1,STRG.12004.2,blat.proc3825170.chain_743,blat.proc3825170.chain_746	4
scaffold_1	starts_in_intron	11394319	11394319	+	asmbl_2094	none	Trinity_GG_17787_c1_g1_i1	1	STRG.748.1,blat.proc3825164.chain_917,blat.proc3825164.chain_919	3
scaffold_26	alternate_exon	4818229	4818340	+	asmbl_34928	none	blat.proc3825178.chain_1219	1	STRG.28202.2,blat.proc3825178.chain_1221	2
scaffold_16	alt_donor	14626796	14626797	+	asmbl_16693,asmbl_16694	none	STRG.19857.1,Trinity_GG_28182_c0_g1_i1,Trinity_GG_28182_c0_g1_i2,blat.proc3825174.chain_735,blat.proc3825174.chain_736	5	STRG.19857.2	1
scaffold_22	retained_exon	9718551	9719198	+	asmbl_30316	none	STRG.25308.2	1	STRG.25308.3	1
scaffold_3	spliced_intron	3261824	3262038	+	asmbl_39938,asmbl_39939	none	STRG.3072.2,STRG.3072.6	2	blat.proc3825164.chain_3387	1
scaffold_14	spliced_intron	150868	151276	-	asmbl_12778,asmbl_12779,asmbl_12780,asmbl_12781,asmbl_12782,asmbl_12783	none	STRG.16711.2,STRG.16711.3,STRG.16711.5,STRG.16711.6,blat.proc3825156.chain_1518,blat.proc3825156.chain_1520,blat.proc3825156.chain_1521	7	STRG.16711.4,blat.proc3825156.chain_1519	2
scaffold_11	alt_donor	17383104	17383105	-	asmbl_7267,asmbl_7270	none	STRG.14397.1,blat.proc3825154.chain_2894,blat.proc3825154.chain_2896	3	STRG.14397.2	1
scaffold_8	alternate_exon	10008242	10008461	+	asmbl_53138	none	STRG.10257.2	1	STRG.10257.1	1
scaffold_8	starts_in_intron	8270483	8270483	-	asmbl_51948	none	blat.proc3825152.chain_2385	1	STRG.10106.1,STRG.10106.2,blat.proc3825152.chain_2381,blat.proc3825152.chain_2383	4
scaffold_10	spliced_intron	8896936	8897048	-	asmbl_4621,asmbl_4622,asmbl_4625,asmbl_4626,asmbl_4628,asmbl_4629,asmbl_4632,asmbl_4633	none	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273	9	blat.proc3825154.chain_1264,blat.proc3825154.chain_1271,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	4
scaffold_1	skipped_exon	4567861	4569888	-	asmbl_207	none	STRG.285.3	1	STRG.285.1,STRG.285.2,STRG.285.4,blat.proc3825148.chain_153,blat.proc3825148.chain_158,blat.proc3825148.chain_159	6
scaffold_19	starts_in_intron	827811	827811	-	asmbl_22007,asmbl_22010	none	STRG.21882.3,STRG.21882.4,blat.proc3825158.chain_2703	3	STRG.21882.1,STRG.21882.2,STRG.21882.5,blat.proc3825158.chain_2702,blat.proc3825158.chain_2705	5
scaffold_3	spliced_intron	800441	800585	-	asmbl_38676,asmbl_38677	none	STRG.2908.1,STRG.2908.2,blat.proc3825148.chain_2794,blat.proc3825148.chain_2795	4	STRG.2908.4,Trinity_GG_1570_c0_g1_i2,blat.proc3825148.chain_2793	3
scaffold_15	alt_acceptor	5322411	5322412	-	asmbl_14195,asmbl_14199	none	STRG.18225.2,Trinity_GG_10261_c0_g1_i2,blat.proc3825156.chain_3084,blat.proc3825156.chain_3085	4	blat.proc3825156.chain_3083	1
scaffold_300	alt_acceptor	1587	1588	+	asmbl_40904	none	STRG.30272.2	1	STRG.30272.1,blat.proc3825178.chain_3365	2
scaffold_10	starts_in_intron	1490321	1490321	-	asmbl_4062	none	blat.proc3825154.chain_515	1	STRG.12025.1,STRG.12025.2,STRG.12025.3,blat.proc3825154.chain_512,blat.proc3825154.chain_513,blat.proc3825154.chain_514	6
scaffold_3	starts_in_intron	10608560	10608560	-	asmbl_39098	none	STRG.3501.1,blat.proc3825148.chain_3331	2	STRG.3501.2,STRG.3501.3,blat.proc3825148.chain_3328,blat.proc3825148.chain_3329,blat.proc3825148.chain_3330	5
scaffold_1	retained_exon	20339722	20339757	+	asmbl_2625	none	blat.proc3825164.chain_1591	1	STRG.1396.2,blat.proc3825164.chain_1596	2
scaffold_21	starts_in_intron	8006363	8006363	+	asmbl_28781	none	blat.proc3825176.chain_1554	1	STRG.24337.1,STRG.24337.2,STRG.24337.3,blat.proc3825176.chain_1553,blat.proc3825176.chain_1555,blat.proc3825176.chain_1557	6
scaffold_14	alternate_exon	8222310	8222905	+	asmbl_12207	none	STRG.17237.1,blat.proc3825172.chain_2036	2	Trinity_GG_26813_c1_g1_i1,blat.proc3825172.chain_2034	2
scaffold_14	retained_intron	12815903	12816062	-	asmbl_13610	none	STRG.17596.2,blat.proc3825156.chain_2443	2	STRG.17596.1,blat.proc3825156.chain_2442	2
scaffold_5	starts_in_intron	5753862	5753862	+	asmbl_45373,asmbl_45374	none	STRG.5996.4,Trinity_GG_20558_c0_g1_i4	2	STRG.5996.1,STRG.5996.2,STRG.5996.3,blat.proc3825166.chain_2158	4
scaffold_14	starts_in_intron	12762395	12762395	-	asmbl_13599	none	blat.proc3825156.chain_2482	1	STRG.17591.1,STRG.17591.4,STRG.17591.5,blat.proc3825156.chain_2478,blat.proc3825156.chain_2479,blat.proc3825156.chain_2480	6
scaffold_3	starts_in_intron	4268447	4268447	-	asmbl_38795	none	STRG.3121.2	1	STRG.3121.3	1
scaffold_6	alt_acceptor	17382269	17382270	+	asmbl_47745	none	STRG.8444.1,Trinity_GG_21955_c0_g1_i4,blat.proc3825168.chain_907	3	STRG.8444.2	1
scaffold_18	spliced_intron	4708153	4708225	+	asmbl_20546	none	STRG.21262.1,blat.proc3825174.chain_2204	2	Trinity_GG_29016_c0_g1_i1,blat.proc3825174.chain_2203	2
scaffold_23	spliced_intron	7281701	7281808	-	asmbl_31025	none	STRG.26052.2	1	STRG.26052.1,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	3
scaffold_17	alternate_exon	11035476	11039046	-	asmbl_18260	none	STRG.20664.4,blat.proc3825158.chain_1639,blat.proc3825158.chain_1651	3	STRG.20664.1	1
scaffold_20	retained_intron	5927643	5928282	-	asmbl_25794,asmbl_25795	none	STRG.23198.2,Trinity_GG_12942_c0_g1_i3,Trinity_GG_12942_c0_g1_i4,blat.proc3825160.chain_282,blat.proc3825160.chain_283,blat.proc3825160.chain_285	6	STRG.23198.1,blat.proc3825160.chain_284	2
scaffold_21	starts_in_intron	2423931	2423931	+	asmbl_28386	none	Trinity_GG_30532_c0_g1_i1,blat.proc3825176.chain_1069	2	STRG.23865.1,Trinity_GG_30532_c0_g1_i2	2
scaffold_19	alternate_exon	3551946	3557449	+	asmbl_21329	none	STRG.22045.4	1	Trinity_GG_29503_c0_g1_i3,blat.proc3825174.chain_3078	2
scaffold_13	retained_intron	2295238	2295321	+	asmbl_10593	none	blat.proc3825172.chain_245	1	STRG.15546.1,blat.proc3825172.chain_244,blat.proc3825172.chain_246	3
scaffold_13	skipped_exon	13973928	13974878	+	asmbl_11415	none	blat.proc3825172.chain_1172	1	blat.proc3825172.chain_1173	1
scaffold_7	retained_intron	6042675	6042946	-	asmbl_50908	none	STRG.8910.1,Trinity_GG_5061_c0_g1_i13,Trinity_GG_5061_c0_g1_i3,Trinity_GG_5061_c0_g1_i4,blat.proc3825152.chain_1346,blat.proc3825152.chain_1347,blat.proc3825152.chain_1348	7	STRG.8910.5,blat.proc3825152.chain_1349	2
scaffold_11	alt_acceptor	6016352	6016353	+	asmbl_5599,asmbl_5600	none	STRG.13667.1,STRG.13667.3,blat.proc3825170.chain_2206,blat.proc3825170.chain_2208	4	STRG.13667.2,blat.proc3825170.chain_2207	2
scaffold_9	alt_acceptor	17743055	17743056	+	asmbl_54642	none	blat.proc3825170.chain_566	1	STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_564	3
scaffold_10	starts_in_intron	12894168	12894168	-	asmbl_4840	none	blat.proc3825154.chain_1477	1	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1473,blat.proc3825154.chain_1475	4
scaffold_5	alt_donor	8579137	8579138	+	asmbl_45557	none	STRG.6193.2	1	STRG.6193.1,Trinity_GG_20689_c0_g1_i1,blat.proc3825166.chain_2403	3
scaffold_3	ends_in_intron	11522959	11522959	+	asmbl_40357	none	Trinity_GG_19338_c0_g1_i1,blat.proc3825166.chain_98	2	STRG.3583.1,STRG.3583.2,Trinity_GG_19338_c0_g1_i2,blat.proc3825166.chain_100,blat.proc3825166.chain_101,blat.proc3825166.chain_99	6
scaffold_25	alt_acceptor	5996645	5996646	-	asmbl_34300	none	STRG.27504.2	1	STRG.27504.1	1
scaffold_28	retained_intron	105779	105881	-	asmbl_37894	none	blat.proc3825162.chain_2424	1	STRG.29246.1,blat.proc3825162.chain_2421,blat.proc3825162.chain_2423,blat.proc3825162.chain_2426	4
scaffold_3	alt_donor	14370842	14370843	-	asmbl_39370	none	STRG.3776.2	1	STRG.3776.1,Trinity_GG_2078_c0_g1_i1,blat.proc3825148.chain_3673	3
scaffold_10	retained_exon	3065894	3065943	-	asmbl_4156	none	STRG.12130.3,blat.proc3825154.chain_665	2	STRG.12130.1,blat.proc3825154.chain_664	2
scaffold_5	alt_donor	8134924	8134925	+	asmbl_45534	none	STRG.6190.2,blat.proc3825166.chain_2398	2	STRG.6190.1,blat.proc3825166.chain_2396	2
scaffold_5	skipped_exon	13801958	13803444	-	asmbl_44561,asmbl_44564	none	STRG.6602.1,blat.proc3825150.chain_2813,blat.proc3825150.chain_2814	3	STRG.6602.3,blat.proc3825150.chain_2815	2
scaffold_25	spliced_intron	4441939	4442378	+	asmbl_33500	none	STRG.27374.2	1	STRG.27374.1,Trinity_GG_32407_c0_g1_i1,blat.proc3825178.chain_481	3
scaffold_6	spliced_intron	12937728	12937921	+	asmbl_47456	none	STRG.8053.1,Trinity_GG_21733_c0_g1_i1,blat.proc3825168.chain_531	3	STRG.8053.2,blat.proc3825168.chain_532	2
scaffold_4	alternate_exon	7259296	7265359	+	asmbl_41481,asmbl_41483	none	STRG.4561.2,STRG.4561.5,Trinity_GG_19860_c0_g1_i1,Trinity_GG_19860_c0_g1_i3,blat.proc3825166.chain_1049,blat.proc3825166.chain_1050,blat.proc3825166.chain_1053	7	STRG.4561.6,STRG.4561.7,Trinity_GG_19860_c0_g1_i4,blat.proc3825166.chain_1048	4
scaffold_20	ends_in_intron	4480985	4480985	-	asmbl_25740	none	Trinity_GG_12886_c0_g2_i1,blat.proc3825160.chain_171	2	STRG.23127.1,STRG.23127.4,blat.proc3825160.chain_168	3
scaffold_17	alt_acceptor	3998789	3998790	+	asmbl_18757	none	blat.proc3825174.chain_1031	1	STRG.20160.2,blat.proc3825174.chain_1035	2
scaffold_1	alt_donor	6127233	6127234	-	asmbl_320	none	blat.proc3825148.chain_391	1	STRG.415.1,STRG.415.2,blat.proc3825148.chain_392	3
scaffold_11	ends_in_intron	17343338	17343338	+	asmbl_6215	none	blat.proc3825170.chain_2877	1	STRG.14394.3	1
scaffold_5	starts_in_intron	6583966	6583966	-	asmbl_44101	none	blat.proc3825150.chain_2259	1	blat.proc3825150.chain_2258,blat.proc3825150.chain_2261	2
scaffold_7	alt_donor	8398667	8398668	+	asmbl_49994	none	STRG.9075.1	1	STRG.9075.2	1
scaffold_24	alternate_exon	2062233	2062276	-	asmbl_32770	none	STRG.26432.4,Trinity_GG_14758_c0_g1_i2,blat.proc3825160.chain_3527	3	STRG.26432.2,blat.proc3825160.chain_3526	2
scaffold_20	alt_donor	1876050	1876051	-	asmbl_25616	none	blat.proc3825176.chain_121	1	STRG.22923.1	1
scaffold_6	alternate_exon	14855260	14855302	-	asmbl_49039	none	STRG.8264.3	1	STRG.8264.2,Trinity_GG_4670_c2_g1_i1,blat.proc3825152.chain_651	3
scaffold_27	starts_in_intron	502236	502236	-	asmbl_36694	none	STRG.28569.1,blat.proc3825162.chain_1814	2	STRG.28569.2,Trinity_GG_15989_c1_g1_i1,blat.proc3825162.chain_1815	3
scaffold_15	ends_in_intron	11410141	11410141	-	asmbl_14507,asmbl_14508	none	blat.proc3825156.chain_3445,blat.proc3825156.chain_3447	2	STRG.18616.1,blat.proc3825156.chain_3449	2
scaffold_8	alternate_exon	14405390	14405536	-	asmbl_52313	none	blat.proc3825152.chain_2649	1	STRG.10529.1,blat.proc3825152.chain_2648	2
scaffold_8	starts_in_intron	14137133	14137133	+	asmbl_53362	none	blat.proc3825168.chain_3069	1	STRG.10516.1	1
scaffold_7	ends_in_intron	9860667	9860667	-	asmbl_51091	none	STRG.9189.3,Trinity_GG_5123_c1_g1_i1,blat.proc3825152.chain_1470	3	STRG.9189.1,blat.proc3825152.chain_1466,blat.proc3825152.chain_1467,blat.proc3825152.chain_1468,blat.proc3825152.chain_1469	5
scaffold_21	retained_intron	4101489	4102411	+	asmbl_28503	none	STRG.24000.5	1	STRG.24000.4	1
scaffold_18	skipped_exon	4122717	4123966	+	asmbl_20499,asmbl_20500	none	STRG.21212.3,Trinity_GG_28938_c0_g1_i3,blat.proc3825174.chain_2071	3	STRG.21212.1,STRG.21212.2,Trinity_GG_28938_c0_g1_i1,Trinity_GG_28938_c0_g1_i2,blat.proc3825174.chain_2069,blat.proc3825174.chain_2070	6
scaffold_3	ends_in_intron	1342263	1342263	-	asmbl_38703	none	Trinity_GG_1621_c2_g1_i1,blat.proc3825148.chain_2875	2	STRG.2959.1	1
scaffold_6	alt_donor	1740634	1740635	+	asmbl_46734	none	blat.proc3825150.chain_3229	1	STRG.7229.1	1
scaffold_22	alternate_exon	11155459	11155573	-	asmbl_29650	none	STRG.25447.1,Trinity_GG_14198_c0_g1_i1,blat.proc3825160.chain_2530	3	STRG.25447.2	1
scaffold_28	skipped_exon	3117227	3117613	-	asmbl_38133	none	STRG.29518.2	1	STRG.29518.1,blat.proc3825162.chain_2652	2
scaffold_21	starts_in_intron	2656732	2656732	-	asmbl_27484	none	STRG.23906.3,blat.proc3825160.chain_978	2	STRG.23906.1,STRG.23906.2,Trinity_GG_13292_c0_g1_i3,blat.proc3825160.chain_977,blat.proc3825160.chain_981	5
scaffold_24	alt_acceptor	10335153	10335154	+	asmbl_32555	none	blat.proc3825178.chain_213	1	STRG.26993.1,STRG.26993.2,blat.proc3825178.chain_214	3
scaffold_15	spliced_intron	2894311	2894447	-	asmbl_14063	none	STRG.18078.3	1	STRG.18078.2,blat.proc3825156.chain_2906	2
scaffold_17	spliced_intron	8303687	8303849	-	asmbl_18084,asmbl_18085	none	STRG.20446.1,blat.proc3825158.chain_1502,blat.proc3825158.chain_1503	3	STRG.20446.2	1
scaffold_3	retained_intron	14259583	14259877	+	asmbl_40505,asmbl_40506	none	STRG.3766.1,Trinity_GG_19418_c0_g1_i1,blat.proc3825166.chain_252,blat.proc3825166.chain_253	4	STRG.3766.2,blat.proc3825166.chain_254	2
scaffold_23	skipped_exon	10323621	10325802	-	asmbl_31144	none	STRG.26236.2,blat.proc3825160.chain_3370	2	STRG.26236.1,blat.proc3825160.chain_3369	2
scaffold_6	alt_donor	168421	168422	-	asmbl_48027	none	STRG.7079.2	1	STRG.7079.1	1
scaffold_14	alternate_exon	15399083	15400300	-	asmbl_13722	none	STRG.17772.1,blat.proc3825156.chain_2590	2	STRG.17772.2,blat.proc3825156.chain_2591	2
scaffold_13	alt_acceptor	15510960	15510961	+	asmbl_11514	none	STRG.16593.3	1	STRG.16593.2	1
scaffold_24	alt_acceptor	6834174	6834175	+	asmbl_32346,asmbl_32353	none	STRG.26736.2,blat.proc3825176.chain_3732,blat.proc3825176.chain_3734	3	Trinity_GG_32116_c2_g1_i1,blat.proc3825176.chain_3730,blat.proc3825176.chain_3736	3
scaffold_6	alt_donor	4538365	4538366	-	asmbl_48335	none	STRG.7434.3	1	STRG.7434.1,Trinity_GG_4189_c1_g2_i1	2
scaffold_21	retained_intron	1054629	1054775	-	asmbl_27374,asmbl_27376,asmbl_27379,asmbl_27380,asmbl_27381	none	STRG.23787.1,STRG.23787.2,STRG.23787.3,Trinity_GG_13262_c0_g1_i12,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922,blat.proc3825160.chain_924	7	STRG.23787.4,Trinity_GG_13262_c0_g1_i1,blat.proc3825160.chain_925	3
scaffold_6	alt_acceptor	6942795	6942796	+	asmbl_47025,asmbl_47026	none	STRG.7602.1,blat.proc3825168.chain_42,blat.proc3825168.chain_44	3	STRG.7602.2	1
scaffold_18	retained_intron	7686561	7686884	+	asmbl_20774,asmbl_20775,asmbl_20776,asmbl_20782,asmbl_20784	none	STRG.21474.3,STRG.21474.5,Trinity_GG_29179_c0_g1_i14,blat.proc3825174.chain_2511,blat.proc3825174.chain_2512,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518	7	STRG.21474.1,STRG.21474.4,Trinity_GG_29179_c0_g1_i11,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2510,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515	7
scaffold_22	retained_exon	9157570	9157645	-	asmbl_29519,asmbl_29520	none	STRG.25251.1,blat.proc3825160.chain_2365	2	STRG.25251.2,Trinity_GG_14095_c0_g1_i2,blat.proc3825160.chain_2364	3
scaffold_9	alt_acceptor	16764343	16764344	-	asmbl_55632	none	STRG.11822.2	1	STRG.11822.1,blat.proc3825154.chain_317	2
scaffold_1	retained_intron	907269	907587	-	asmbl_34	none	STRG.48.2	1	STRG.48.1	1
scaffold_26	alt_donor	969069	969070	-	asmbl_35397	none	STRG.27894.2	1	STRG.27894.1,blat.proc3825162.chain_1220	2
scaffold_500	retained_intron	2115	2216	+	asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492,asmbl_46493	none	STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445	6	STRG.30357.1,blat.proc3825178.chain_3440,blat.proc3825178.chain_3446	3
scaffold_14	retained_exon	8307760	8307872	+	asmbl_12218	none	STRG.17257.1,blat.proc3825172.chain_2012	2	STRG.17257.2	1
scaffold_21	alt_acceptor	2525650	2525651	-	asmbl_27472	none	STRG.23884.1,blat.proc3825160.chain_1033	2	STRG.23884.2,blat.proc3825160.chain_1034	2
scaffold_10	skipped_exon	5856417	5857533	-	asmbl_4399	none	blat.proc3825154.chain_983	1	STRG.12409.1,STRG.12409.2,STRG.12409.3,blat.proc3825154.chain_985	4
scaffold_7	alternate_exon	1230858	1231310	+	asmbl_49588,asmbl_49589	none	Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c4_g1_i1,blat.proc3825168.chain_1079,blat.proc3825168.chain_1084	4	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	8
scaffold_14	alt_acceptor	13582228	13582229	-	asmbl_13644	none	STRG.17639.2,blat.proc3825156.chain_2488	2	STRG.17639.1,blat.proc3825156.chain_2487	2
scaffold_6	ends_in_intron	18086157	18086157	+	asmbl_47818	none	blat.proc3825168.chain_1020	1	blat.proc3825168.chain_1021	1
scaffold_7	retained_exon	1231239	1231310	+	asmbl_49599,asmbl_49604	none	STRG.8637.7,Trinity_GG_22033_c0_g1_i16,blat.proc3825168.chain_1080	3	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	8
scaffold_21	starts_in_intron	3971191	3971191	-	asmbl_27558	none	blat.proc3825160.chain_1123	1	STRG.23981.1,STRG.23981.2,blat.proc3825160.chain_1121,blat.proc3825160.chain_1122	4
scaffold_6	starts_in_intron	1499556	1499556	+	asmbl_46711	none	blat.proc3825166.chain_3408	1	STRG.7191.1,STRG.7191.2,STRG.7191.3,blat.proc3825166.chain_3404,blat.proc3825166.chain_3406	5
scaffold_15	retained_intron	6882636	6882713	-	asmbl_14261	none	Trinity_GG_10293_c0_g1_i4,blat.proc3825156.chain_3155	2	STRG.18301.1,STRG.18301.2,STRG.18301.3,STRG.18301.4,STRG.18301.5,STRG.18301.6,STRG.18301.7,Trinity_GG_10293_c0_g1_i10,Trinity_GG_10293_c0_g1_i6,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3154,blat.proc3825156.chain_3156,blat.proc3825156.chain_3157,blat.proc3825156.chain_3159	16
scaffold_6	alt_acceptor	2902606	2902607	+	asmbl_46780,asmbl_46783	none	STRG.7291.3,STRG.7291.4,blat.proc3825166.chain_3491	3	STRG.7291.1,STRG.7291.2,blat.proc3825166.chain_3492	3
scaffold_5	retained_intron	18249279	18249475	+	asmbl_46223,asmbl_46225,asmbl_46226	none	STRG.6960.1,STRG.6960.3,STRG.6960.4,Trinity_GG_21136_c0_g1_i2,blat.proc3825166.chain_3160,blat.proc3825166.chain_3161	6	STRG.6960.2,blat.proc3825166.chain_3162	2
scaffold_13	spliced_intron	3585540	3585773	-	asmbl_9554	none	STRG.15672.2,blat.proc3825156.chain_491	2	STRG.15672.1,Trinity_GG_8756_c0_g1_i1,blat.proc3825156.chain_492	3
scaffold_19	retained_intron	7702234	7702855	+	asmbl_21491	none	blat.proc3825174.chain_3257	1	STRG.22255.1,STRG.22255.2,STRG.22255.3,Trinity_GG_29606_c0_g2_i1,blat.proc3825174.chain_3256,blat.proc3825174.chain_3258	6
scaffold_9	alternate_exon	4206880	4207808	+	asmbl_53942	none	STRG.11024.2,Trinity_GG_23408_c0_g1_i1,blat.proc3825168.chain_3483	3	STRG.11024.1,blat.proc3825168.chain_3487	2
scaffold_13	retained_intron	2653343	2653584	-	asmbl_9472	none	blat.proc3825156.chain_379	1	STRG.15580.1,blat.proc3825156.chain_376,blat.proc3825156.chain_377,blat.proc3825156.chain_378	4
scaffold_26	spliced_intron	3361453	3361585	+	asmbl_34773	none	STRG.28022.2,blat.proc3825178.chain_1043	2	blat.proc3825178.chain_1041	1
scaffold_1	skipped_exon	10949081	10950931	+	asmbl_2035	none	STRG.715.1,blat.proc3825164.chain_858	2	STRG.715.3,blat.proc3825164.chain_863,blat.proc3825164.chain_864	3
scaffold_8	alt_acceptor	18085228	18085229	-	asmbl_52507	none	STRG.10710.5	1	STRG.10710.1,STRG.10710.3,STRG.10710.4,Trinity_GG_5955_c0_g1_i2,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2979,blat.proc3825152.chain_2982	7
scaffold_1	spliced_intron	2740187	2740762	-	asmbl_130	none	STRG.176.3	1	STRG.176.1,STRG.176.2,blat.proc3825148.chain_182,blat.proc3825148.chain_183,blat.proc3825148.chain_184	5
scaffold_16	starts_in_intron	6096803	6096803	-	asmbl_17141	none	STRG.19342.2	1	STRG.19342.1,blat.proc3825158.chain_498,blat.proc3825158.chain_499,blat.proc3825158.chain_500,blat.proc3825158.chain_501,blat.proc3825158.chain_502	6
scaffold_21	alt_acceptor	5610580	5610581	-	asmbl_27683	none	STRG.24097.2	1	STRG.24097.1	1
scaffold_2	retained_intron	19127909	19127928	+	asmbl_25263	none	STRG.2788.1	1	blat.proc3825164.chain_2969	1
scaffold_8	retained_intron	9112712	9112870	-	asmbl_51999	none	blat.proc3825152.chain_2371,blat.proc3825152.chain_2373	2	STRG.10169.1,STRG.10169.2,blat.proc3825152.chain_2372	3
scaffold_27	ends_in_intron	4457448	4457448	-	asmbl_36955	none	Trinity_GG_16194_c0_g1_i1,blat.proc3825162.chain_2132	2	STRG.28899.1,blat.proc3825162.chain_2133	2
scaffold_1	spliced_intron	1041790	1043520	+	asmbl_1454	none	STRG.62.2,blat.proc3825164.chain_92	2	STRG.62.1,Trinity_GG_17322_c0_g1_i1,Trinity_GG_17322_c1_g1_i1,blat.proc3825164.chain_90,blat.proc3825164.chain_93	5
scaffold_24	alt_acceptor	6801455	6801456	-	asmbl_32979,asmbl_32980	none	STRG.26730.1,STRG.26730.3,Trinity_GG_14947_c0_g1_i1,blat.proc3825162.chain_91,blat.proc3825162.chain_92	5	STRG.26730.2,blat.proc3825162.chain_89	2
scaffold_4	retained_exon	7151690	7151997	+	asmbl_41469	none	STRG.4559.4	1	STRG.4559.2,STRG.4559.3,STRG.4559.5	3
scaffold_5	starts_in_intron	13134547	13134547	-	asmbl_44525	none	blat.proc3825150.chain_2745	1	STRG.6556.1,blat.proc3825150.chain_2744	2
scaffold_12	spliced_intron	7836793	7836902	-	asmbl_8616	none	STRG.14858.1,blat.proc3825154.chain_3377	2	blat.proc3825154.chain_3378	1
scaffold_43	spliced_intron	782	922	-	asmbl_43697	none	STRG.30047.7	1	STRG.30047.1	1
scaffold_11	spliced_intron	13256356	13256573	+	asmbl_6041,asmbl_6042	none	STRG.14199.1,STRG.14199.2,blat.proc3825170.chain_2729,blat.proc3825170.chain_2732	4	Trinity_GG_25137_c0_g1_i5,blat.proc3825170.chain_2731	2
scaffold_24	spliced_intron	8736860	8737041	-	asmbl_33097,asmbl_33099,asmbl_33100	none	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_184	4	Trinity_GG_15007_c0_g1_i6,blat.proc3825162.chain_185	2
scaffold_9	ends_in_intron	16573391	16573391	-	asmbl_55593	none	Trinity_GG_6517_c0_g1_i2,blat.proc3825154.chain_254	2	STRG.11808.1,STRG.11808.2,Trinity_GG_6517_c0_g1_i1,blat.proc3825154.chain_255	4
scaffold_1	alt_donor	12941538	12941539	+	asmbl_2282	none	STRG.930.2	1	STRG.930.1,blat.proc3825164.chain_1106	2
scaffold_7	ends_in_intron	10710391	10710391	+	asmbl_50144	none	Trinity_GG_22430_c1_g1_i2,blat.proc3825168.chain_1732	2	STRG.9249.1,STRG.9249.2,blat.proc3825168.chain_1733	3
scaffold_17	ends_in_intron	538004	538004	+	asmbl_18549	none	blat.proc3825174.chain_787	1	STRG.19902.1,STRG.19902.2,STRG.19902.3,blat.proc3825174.chain_784,blat.proc3825174.chain_786,blat.proc3825174.chain_788,blat.proc3825174.chain_789	7
scaffold_8	retained_intron	9937116	9937196	-	asmbl_52077	none	blat.proc3825152.chain_2521	1	STRG.10247.1,STRG.10247.2,blat.proc3825152.chain_2520	3
scaffold_6	starts_in_intron	4280271	4280271	-	asmbl_48302	none	blat.proc3825150.chain_3503	1	STRG.7403.1,Trinity_GG_4134_c1_g1_i3,blat.proc3825150.chain_3502	3
scaffold_21	alt_donor	8519302	8519303	-	asmbl_27924	none	STRG.24377.2,blat.proc3825160.chain_1556	2	STRG.24377.3,blat.proc3825160.chain_1559	2
scaffold_14	alt_donor	11341230	11341231	-	asmbl_13471	none	STRG.17464.1	1	STRG.17464.2,blat.proc3825156.chain_2287	2
scaffold_22	starts_in_intron	3783176	3783176	-	asmbl_29184	none	blat.proc3825160.chain_1993	1	blat.proc3825160.chain_1992	1
scaffold_10	alt_donor	17701014	17701015	+	asmbl_3797	none	blat.proc3825154.chain_1793	1	blat.proc3825154.chain_1792	1
scaffold_1	alt_donor	21931332	21931333	-	asmbl_1229	none	STRG.1473.2	1	STRG.1473.1	1
scaffold_24	retained_exon	9592087	9592147	-	asmbl_33138	none	STRG.26947.3	1	STRG.26947.1,blat.proc3825162.chain_297	2
scaffold_1	spliced_intron	16095601	16095685	-	asmbl_973	none	STRG.1129.3	1	STRG.1129.1,Trinity_GG_582_c0_g1_i1,blat.proc3825148.chain_1119	3
scaffold_10	alt_donor	8321124	8321125	-	asmbl_4573	none	STRG.12589.1	1	STRG.12589.2	1
scaffold_1	skipped_exon	11056193	11056696	-	asmbl_606	none	STRG.723.2	1	STRG.723.1,STRG.723.3,blat.proc3825148.chain_696,blat.proc3825148.chain_697	4
scaffold_11	skipped_exon	2099318	2099760	-	asmbl_6474,asmbl_6476	none	STRG.13379.2,STRG.13379.3,blat.proc3825154.chain_1948	3	STRG.13379.1,blat.proc3825154.chain_1949,blat.proc3825154.chain_1950	3
scaffold_7	starts_in_intron	4887930	4887930	+	asmbl_49754	none	Trinity_GG_22172_c0_g1_i1,blat.proc3825168.chain_1304	2	STRG.8834.1,STRG.8834.2,blat.proc3825168.chain_1303,blat.proc3825168.chain_1305	4
scaffold_17	alternate_exon	6797911	6799713	+	asmbl_18872,asmbl_18873	none	STRG.20333.1,STRG.20333.2,blat.proc3825174.chain_1165,blat.proc3825174.chain_1167	4	STRG.20333.3	1
scaffold_27	starts_in_intron	1027734	1027734	-	asmbl_36742	none	STRG.28610.1	1	STRG.28610.2,STRG.28610.3,blat.proc3825162.chain_1755,blat.proc3825162.chain_1756	4
scaffold_21	retained_intron	8278506	8278610	+	asmbl_28807	none	STRG.24368.4	1	STRG.24368.1,STRG.24368.3	2
scaffold_25	retained_intron	5158234	5158408	-	asmbl_34247	none	blat.proc3825162.chain_805	1	STRG.27443.1,blat.proc3825162.chain_807,blat.proc3825162.chain_808	3
scaffold_10	retained_exon	16823005	16823100	+	asmbl_3727	none	STRG.13127.2	1	STRG.13127.1	1
scaffold_13	starts_in_intron	8288008	8288008	+	asmbl_11115	none	STRG.16120.2	1	STRG.16120.1,blat.proc3825172.chain_887	2
scaffold_5	spliced_intron	4729823	4729920	-	asmbl_44003	none	STRG.5930.1,blat.proc3825150.chain_2134	2	blat.proc3825150.chain_2135	1
scaffold_9	alt_donor	16567713	16567714	+	asmbl_54601	none	Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_614	2	STRG.11807.1,STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i21,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_610,blat.proc3825170.chain_612,blat.proc3825170.chain_613,blat.proc3825170.chain_616,blat.proc3825170.chain_617	12
scaffold_21	spliced_intron	5980259	5980363	-	asmbl_27712,asmbl_27714	none	STRG.24137.1,STRG.24137.3	2	STRG.24137.2	1
scaffold_13	retained_intron	3585540	3585773	-	asmbl_9553	none	STRG.15672.1,Trinity_GG_8756_c0_g1_i1,blat.proc3825156.chain_492	3	STRG.15672.2,blat.proc3825156.chain_491	2
scaffold_21	retained_exon	7725836	7725996	+	asmbl_28765	none	STRG.24316.1	1	STRG.24316.3,blat.proc3825176.chain_1476	2
scaffold_10	retained_intron	8908482	8908686	+	asmbl_3335,asmbl_3338,asmbl_3339	none	STRG.12636.1,STRG.12636.2,blat.proc3825170.chain_1225,blat.proc3825170.chain_1227	4	blat.proc3825170.chain_1226	1
scaffold_19	alt_acceptor	12392068	12392069	-	asmbl_22478,asmbl_22479,asmbl_22481,asmbl_22482	none	STRG.22570.1,STRG.22570.2,blat.proc3825158.chain_3326,blat.proc3825158.chain_3328,blat.proc3825158.chain_3329,blat.proc3825158.chain_3330	6	STRG.22570.3,blat.proc3825158.chain_3327	2
scaffold_20	retained_intron	7858103	7858245	-	asmbl_25935,asmbl_25937	none	STRG.23336.4,blat.proc3825160.chain_415	2	STRG.23336.1,STRG.23336.2,STRG.23336.3,blat.proc3825160.chain_416,blat.proc3825160.chain_417	5
scaffold_26	alt_acceptor	3623158	3623159	+	asmbl_34801	none	STRG.28042.2,blat.proc3825178.chain_1087	2	STRG.28042.3	1
scaffold_5	ends_in_intron	6017352	6017352	-	asmbl_44080	none	Trinity_GG_3358_c1_g2_i1,blat.proc3825150.chain_2171	2	STRG.6019.1,Trinity_GG_3358_c1_g1_i4,blat.proc3825150.chain_2168,blat.proc3825150.chain_2170	4
scaffold_8	starts_in_intron	16277800	16277800	-	asmbl_52383	none	blat.proc3825152.chain_2814	1	STRG.10619.1,STRG.10619.2,blat.proc3825152.chain_2812,blat.proc3825152.chain_2813	4
scaffold_5	ends_in_intron	4848964	4848964	+	asmbl_45305	none	blat.proc3825166.chain_2160	1	blat.proc3825166.chain_2159	1
scaffold_12	starts_in_intron	7509240	7509240	-	asmbl_8591	none	Trinity_GG_8280_c1_g1_i1,blat.proc3825154.chain_3353	2	STRG.14832.1,Trinity_GG_8280_c1_g1_i2,blat.proc3825154.chain_3352	3
scaffold_1	starts_in_intron	11165224	11165224	-	asmbl_613	none	blat.proc3825148.chain_685	1	STRG.740.1,blat.proc3825148.chain_684	2
scaffold_5	spliced_intron	9085103	9085385	+	asmbl_45600	none	Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2480	2	blat.proc3825166.chain_2474,blat.proc3825166.chain_2476	2
scaffold_18	alternate_exon	12935888	12936128	+	asmbl_20983	none	blat.proc3825158.chain_2618	1	STRG.21740.2	1
scaffold_12	alt_donor	12451859	12451860	+	asmbl_8004	none	STRG.15151.2,blat.proc3825170.chain_3676,blat.proc3825170.chain_3677	3	STRG.15151.1,STRG.15151.3	2
scaffold_4	alternate_exon	16483990	16484053	+	asmbl_41972	none	STRG.5223.2	1	STRG.5223.1	1
scaffold_2	alt_donor	14276152	14276153	+	asmbl_24899	none	STRG.2428.2	1	STRG.2428.3,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596	4
scaffold_12	starts_in_intron	7519076	7519076	+	asmbl_7764	none	blat.proc3825170.chain_3371	1	STRG.14833.1,blat.proc3825170.chain_3370	2
scaffold_7	alt_acceptor	17737583	17737584	+	asmbl_50492,asmbl_50494	none	STRG.9619.1,blat.proc3825168.chain_2072,blat.proc3825168.chain_2074	3	STRG.9619.2	1
scaffold_13	alt_donor	13559115	13559116	+	asmbl_11391	none	STRG.16409.2	1	STRG.16409.1	1
scaffold_5	retained_intron	68119	68377	+	asmbl_45066	none	Trinity_GG_20364_c0_g1_i1,Trinity_GG_20364_c0_g1_i3,Trinity_GG_20364_c0_g1_i5,blat.proc3825166.chain_1859,blat.proc3825166.chain_1860	5	blat.proc3825166.chain_1861	1
scaffold_13	starts_in_intron	10050654	10050654	+	asmbl_11231	none	Trinity_GG_26246_c0_g1_i5,blat.proc3825172.chain_1055	2	STRG.16247.1,blat.proc3825172.chain_1056,blat.proc3825172.chain_1057,blat.proc3825172.chain_1058,blat.proc3825172.chain_1059	5
scaffold_25	alternate_exon	7320859	7322163	-	asmbl_34395	none	STRG.27581.4	1	blat.proc3825178.chain_653	1
scaffold_2	spliced_intron	16401404	16401522	+	asmbl_25132,asmbl_25133	none	STRG.2581.1,STRG.2581.2,Trinity_GG_18772_c0_g1_i4,blat.proc3825164.chain_2865,blat.proc3825164.chain_2866	5	STRG.2581.3	1
scaffold_23	ends_in_intron	2307212	2307212	+	asmbl_31386	none	blat.proc3825176.chain_2664	1	STRG.25708.1,blat.proc3825176.chain_2660,blat.proc3825176.chain_2663	3
scaffold_22	retained_intron	214832	216306	+	asmbl_29820	none	Trinity_GG_30960_c0_g1_i4,blat.proc3825176.chain_1806	2	STRG.24676.5	1
scaffold_26	retained_intron	903117	903347	+	asmbl_34709	none	Trinity_GG_32665_c0_g1_i1,Trinity_GG_32710_c0_g1_i1,blat.proc3825178.chain_906	3	STRG.27895.1,blat.proc3825178.chain_907	2
scaffold_6	retained_intron	3056262	3056806	+	asmbl_46802	none	blat.proc3825166.chain_3519	1	STRG.7319.1,STRG.7319.2,STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3520,blat.proc3825166.chain_3521,blat.proc3825166.chain_3522,blat.proc3825166.chain_3523,blat.proc3825166.chain_3524	9
scaffold_4	starts_in_intron	1638150	1638150	+	asmbl_41122	none	Trinity_GG_19647_c0_g1_i4,blat.proc3825166.chain_651	2	STRG.4197.1,blat.proc3825166.chain_650	2
scaffold_1	retained_intron	11068679	11068764	+	asmbl_2055	none	STRG.725.1,Trinity_GG_17736_c0_g1_i2,blat.proc3825164.chain_812	3	STRG.725.2	1
scaffold_10	ends_in_intron	8941091	8941091	+	asmbl_3346	none	Trinity_GG_24250_c0_g1_i3,blat.proc3825170.chain_1191	2	STRG.12643.1,Trinity_GG_24250_c0_g1_i2,blat.proc3825170.chain_1192	3
scaffold_10	spliced_intron	6466373	6466479	-	asmbl_4466,asmbl_4467,asmbl_4468,asmbl_4469	none	blat.proc3825154.chain_1051,blat.proc3825154.chain_1052,blat.proc3825154.chain_1053,blat.proc3825154.chain_1054	4	blat.proc3825154.chain_1049,blat.proc3825154.chain_1050	2
scaffold_3	ends_in_intron	13701056	13701056	+	asmbl_40453	none	blat.proc3825166.chain_221	1	STRG.3717.1,STRG.3717.2,blat.proc3825166.chain_218,blat.proc3825166.chain_222	4
scaffold_643	retained_exon	1629	1880	-	asmbl_49488	none	STRG.30415.3	1	STRG.30415.1,STRG.30415.2	2
scaffold_11	retained_intron	11999468	11999662	-	asmbl_7056	none	STRG.14126.2,Trinity_GG_7897_c0_g1_i2,blat.proc3825154.chain_2672	3	STRG.14126.1,STRG.14126.4,Trinity_GG_7897_c0_g1_i4,blat.proc3825154.chain_2671	4
scaffold_14	spliced_intron	12751805	12752771	-	asmbl_13595,asmbl_13596,asmbl_13598,asmbl_13603	none	STRG.17591.1,STRG.17591.2,blat.proc3825156.chain_2476,blat.proc3825156.chain_2477	4	STRG.17591.3,blat.proc3825156.chain_2474	2
scaffold_7	starts_in_intron	8712564	8712564	-	asmbl_51032	none	STRG.9112.2,blat.proc3825152.chain_1504	2	STRG.9112.1	1
scaffold_4	spliced_intron	4417303	4417393	+	asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41249,asmbl_41254,asmbl_41255,asmbl_41258,asmbl_41261	none	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_842,blat.proc3825166.chain_847,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_851	13	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	4
scaffold_5	alternate_exon	18560471	18560555	+	asmbl_46266,asmbl_46267,asmbl_46268,asmbl_46269	none	STRG.6987.1,STRG.6987.2,STRG.6987.3,STRG.6987.4,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i7,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	10	STRG.6987.6,Trinity_GG_21132_c0_g1_i4	2
scaffold_11	alternate_exon	12411413	12417543	-	asmbl_7089	none	STRG.14158.1	1	STRG.14158.2,STRG.14158.3,blat.proc3825154.chain_2693	3
scaffold_8	alternate_exon	15211595	15214228	+	asmbl_53391	none	STRG.10555.2	1	STRG.10555.1	1
scaffold_8	spliced_intron	3796351	3797087	+	asmbl_52804	none	STRG.9872.2	1	STRG.9872.1,Trinity_GG_22818_c0_g1_i1,Trinity_GG_22818_c0_g2_i1,blat.proc3825168.chain_2446,blat.proc3825168.chain_2447	5
scaffold_19	retained_intron	11468745	11468906	-	asmbl_22394	none	blat.proc3825158.chain_3233	1	STRG.22478.1,blat.proc3825158.chain_3232	2
scaffold_6	alt_acceptor	394192	394193	+	asmbl_46658	none	STRG.7104.2	1	STRG.7104.1,blat.proc3825166.chain_3314	2
scaffold_4	alt_acceptor	11305438	11305439	+	asmbl_41703	none	STRG.4830.1,blat.proc3825166.chain_1245	2	STRG.4830.2	1
scaffold_6	alt_acceptor	712285	712286	+	asmbl_46674	none	STRG.7131.1	1	STRG.7131.2	1
scaffold_21	alt_acceptor	8278630	8278631	+	asmbl_28803,asmbl_28805	none	STRG.24368.2,blat.proc3825176.chain_1550	2	STRG.24368.1,STRG.24368.3,STRG.24368.4	3
scaffold_15	starts_in_intron	9732226	9732226	-	asmbl_14406	none	blat.proc3825156.chain_3293	1	STRG.18492.1,STRG.18492.2,STRG.18492.3,STRG.18492.4,Trinity_GG_10360_c0_g1_i2,blat.proc3825156.chain_3289,blat.proc3825156.chain_3291	7
scaffold_28	alt_donor	5014513	5014514	+	asmbl_37559	none	Trinity_GG_33747_c0_g1_i3,blat.proc3825178.chain_2831	2	blat.proc3825178.chain_2830	1
scaffold_12	starts_in_intron	4618089	4618089	-	asmbl_8422,asmbl_8423	none	STRG.14640.2,Trinity_GG_8135_c0_g1_i2,Trinity_GG_8135_c0_g1_i3,blat.proc3825154.chain_3081,blat.proc3825154.chain_3082	5	STRG.14640.1	1
scaffold_15	alternate_exon	13682662	13682773	-	asmbl_14654	none	STRG.18798.2	1	STRG.18798.1,blat.proc3825156.chain_3641	2
scaffold_21	spliced_intron	5110399	5110504	-	asmbl_27605	none	STRG.24048.1,blat.proc3825160.chain_1177	2	blat.proc3825160.chain_1178	1
scaffold_14	spliced_intron	15247760	15247780	+	asmbl_12581	none	blat.proc3825172.chain_2470	1	blat.proc3825172.chain_2468	1
scaffold_7	retained_intron	12058955	12059038	+	asmbl_50211	none	Trinity_GG_22476_c0_g1_i8,blat.proc3825168.chain_1824	2	STRG.9307.1,Trinity_GG_22476_c0_g1_i2,blat.proc3825168.chain_1823,blat.proc3825168.chain_1827	4
scaffold_72	alt_acceptor	17528	17529	+	asmbl_51614	none	STRG.30111.1	1	STRG.30111.2	1
scaffold_4	alt_acceptor	19337182	19337183	-	asmbl_43426,asmbl_43427	none	STRG.5515.2,blat.proc3825150.chain_1640	2	STRG.5515.1	1
scaffold_11	spliced_intron	8078462	8078553	-	asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6830,asmbl_6832,asmbl_6835	none	STRG.13815.1,STRG.13815.2,STRG.13815.3,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i8,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2326,blat.proc3825154.chain_2328,blat.proc3825154.chain_2330,blat.proc3825154.chain_2332,blat.proc3825154.chain_2333	15	Trinity_GG_7709_c0_g1_i6,blat.proc3825154.chain_2329	2
scaffold_26	retained_intron	9773422	9774402	+	asmbl_35256,asmbl_35257,asmbl_35258,asmbl_35259,asmbl_35260,asmbl_35261	none	STRG.28516.4,Trinity_GG_33091_c0_g1_i3,blat.proc3825178.chain_1653	3	STRG.28516.1,STRG.28516.2,STRG.28516.3,STRG.28516.7,blat.proc3825178.chain_1649	5
scaffold_14	spliced_intron	2374520	2375412	-	asmbl_12935,asmbl_12937,asmbl_12939,asmbl_12941	none	STRG.16854.2,STRG.16854.3,STRG.16854.4,STRG.16854.6	4	STRG.16854.1,Trinity_GG_9462_c0_g1_i7	2
scaffold_8	alt_acceptor	12717460	12717461	+	asmbl_53339	none	STRG.10448.1,blat.proc3825168.chain_3038	2	STRG.10448.2,blat.proc3825168.chain_3037	2
scaffold_1	retained_intron	8645118	8645235	-	asmbl_467,asmbl_472	none	blat.proc3825148.chain_581,blat.proc3825148.chain_586	2	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_584,blat.proc3825148.chain_585	5
scaffold_19	retained_intron	2348182	2348361	+	asmbl_21261	none	STRG.21948.1,blat.proc3825174.chain_2974	2	STRG.21948.2,blat.proc3825174.chain_2973	2
scaffold_6	spliced_intron	2699075	2699232	-	asmbl_48149,asmbl_48151	none	STRG.7265.1,blat.proc3825150.chain_3386	2	STRG.7265.2	1
scaffold_1	alternate_exon	5996905	5997066	-	asmbl_313	none	blat.proc3825148.chain_402	1	STRG.404.1,STRG.404.2,blat.proc3825148.chain_397,blat.proc3825148.chain_399,blat.proc3825148.chain_403	5
scaffold_4	ends_in_intron	16518470	16518470	+	asmbl_41974	none	blat.proc3825166.chain_1587	1	STRG.5227.1	1
scaffold_15	spliced_intron	15188079	15188653	+	asmbl_15725,asmbl_15735,asmbl_15740	none	STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3536	5	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	6
scaffold_19	starts_in_intron	1481834	1481834	+	asmbl_21238	none	blat.proc3825174.chain_2950	1	STRG.21906.1,STRG.21906.2	2
scaffold_6	alt_acceptor	753060	753061	-	asmbl_48064	none	STRG.7138.1,blat.proc3825150.chain_3251	2	STRG.7138.2	1
scaffold_9	alt_acceptor	11889190	11889191	+	asmbl_54392	none	blat.proc3825170.chain_339	1	STRG.11516.1,STRG.11516.2	2
scaffold_14	ends_in_intron	8095428	8095428	-	asmbl_13246	none	blat.proc3825156.chain_2045	1	STRG.17229.2,STRG.17229.3,STRG.17229.4,Trinity_GG_9662_c0_g1_i1,Trinity_GG_9662_c0_g1_i4,Trinity_GG_9662_c0_g1_i5,blat.proc3825156.chain_2042,blat.proc3825156.chain_2043,blat.proc3825156.chain_2044	9
scaffold_24	alternate_exon	9952700	9953067	-	asmbl_33158	none	Trinity_GG_15063_c0_g1_i3	1	STRG.26968.1,STRG.26968.2,STRG.26968.6,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	8
scaffold_17	skipped_exon	5095847	5097032	+	asmbl_18811	none	STRG.20239.1,blat.proc3825174.chain_1090	2	STRG.20239.2,blat.proc3825158.chain_1291	2
scaffold_7	spliced_intron	1235897	1236296	+	asmbl_49606	none	STRG.8637.5	1	STRG.8637.2	1
scaffold_3	alt_acceptor	7220626	7220627	-	asmbl_38959	none	STRG.3325.1,blat.proc3825148.chain_3196	2	STRG.3325.2,blat.proc3825148.chain_3195	2
scaffold_2	retained_intron	7466796	7467432	-	asmbl_23260,asmbl_23264	none	STRG.2074.2,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2058	4	STRG.2074.3	1
scaffold_20	spliced_intron	10135588	10137307	+	asmbl_26940	none	blat.proc3825176.chain_734	1	STRG.23558.1,Trinity_GG_30342_c0_g1_i1,blat.proc3825176.chain_735	3
scaffold_4	spliced_intron	3243470	3243537	-	asmbl_42428	none	STRG.4251.2	1	STRG.4251.1	1
scaffold_1	retained_intron	14320593	14321243	+	asmbl_2383	none	blat.proc3825164.chain_1226	1	STRG.1027.1,blat.proc3825164.chain_1222,blat.proc3825164.chain_1223	3
scaffold_27	alt_acceptor	3281164	3281165	-	asmbl_36904	none	STRG.28808.2	1	STRG.28808.5	1
scaffold_5	alt_donor	18929524	18929525	-	asmbl_44881	none	STRG.7011.2	1	STRG.7011.1,Trinity_GG_3913_c0_g1_i1,blat.proc3825150.chain_3141	3
scaffold_11	retained_intron	2500321	2500474	-	asmbl_6511	none	Trinity_GG_7530_c0_g1_i1,blat.proc3825154.chain_2017	2	STRG.13408.1,blat.proc3825154.chain_2016	2
scaffold_6	retained_intron	7173679	7173782	+	asmbl_47059	none	blat.proc3825168.chain_85	1	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84	6
scaffold_28	ends_in_intron	7722199	7722199	+	asmbl_37706	none	blat.proc3825178.chain_3019	1	STRG.29845.1,blat.proc3825178.chain_3018,blat.proc3825178.chain_3022	3
scaffold_14	alt_donor	6671796	6671797	-	asmbl_13146	none	STRG.17126.1,blat.proc3825156.chain_1874	2	STRG.17126.2,blat.proc3825156.chain_1876	2
scaffold_18	alt_donor	5905583	5905584	-	asmbl_19876,asmbl_19877	none	STRG.21337.2,STRG.21337.4	2	STRG.21337.3	1
scaffold_2	retained_intron	14193353	14193458	-	asmbl_23569	none	blat.proc3825148.chain_2413	1	STRG.2416.1,STRG.2416.2,STRG.2416.3,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	5
scaffold_23	ends_in_intron	3656412	3656412	+	asmbl_31461	none	STRG.25792.2,Trinity_GG_31535_c0_g1_i3,blat.proc3825176.chain_2720	3	STRG.25792.1,blat.proc3825176.chain_2719	2
scaffold_12	alt_acceptor	7275907	7275908	-	asmbl_8563	none	STRG.14801.2,Trinity_GG_8260_c0_g1_i2,blat.proc3825154.chain_3307	3	STRG.14801.1,Trinity_GG_8260_c0_g1_i1,blat.proc3825154.chain_3308	3
scaffold_1	starts_in_intron	11548128	11548128	-	asmbl_626	none	blat.proc3825148.chain_735	1	STRG.764.1,blat.proc3825148.chain_734	2
scaffold_16	alternate_exon	7228663	7228941	-	asmbl_17175	none	STRG.19399.4	1	STRG.19399.1	1
scaffold_3	starts_in_intron	18302233	18302233	-	asmbl_39606	none	blat.proc3825150.chain_201	1	STRG.4035.1,blat.proc3825150.chain_200	2
scaffold_11	retained_intron	12377973	12378067	-	asmbl_7084	none	blat.proc3825154.chain_2687	1	STRG.14152.1,blat.proc3825154.chain_2688	2
scaffold_10	skipped_exon	4335933	4337947	-	asmbl_4286	none	STRG.12278.2,blat.proc3825154.chain_760	2	STRG.12278.1,blat.proc3825154.chain_759	2
scaffold_12	retained_intron	15013574	15013828	-	asmbl_9034	none	blat.proc3825156.chain_108	1	STRG.15302.1,STRG.15302.2,blat.proc3825156.chain_106,blat.proc3825156.chain_107,blat.proc3825156.chain_109,blat.proc3825156.chain_110	6
scaffold_2	alt_donor	2075063	2075064	+	asmbl_24234	none	STRG.1662.1,Trinity_GG_18249_c0_g1_i1,blat.proc3825164.chain_1803	3	STRG.1662.2,Trinity_GG_18249_c0_g1_i3,blat.proc3825164.chain_1805	3
scaffold_10	retained_intron	6075638	6075745	-	asmbl_4423,asmbl_4425,asmbl_4426,asmbl_4427,asmbl_4428,asmbl_4429,asmbl_4431,asmbl_4432	none	STRG.12445.1,STRG.12445.3,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1034	8	STRG.12445.2,blat.proc3825154.chain_1033	2
scaffold_8	retained_exon	10211399	10211437	+	asmbl_53154	none	STRG.10274.1,Trinity_GG_23026_c0_g1_i2,blat.proc3825168.chain_2836	3	STRG.10274.2,Trinity_GG_23026_c0_g1_i1,blat.proc3825168.chain_2837	3
scaffold_13	ends_in_intron	3371885	3371885	+	asmbl_10686	none	Trinity_GG_25884_c0_g1_i2,blat.proc3825172.chain_347	2	STRG.15652.1,blat.proc3825172.chain_348	2
scaffold_28	alt_donor	5014676	5014677	+	asmbl_37562	none	blat.proc3825178.chain_2830	1	Trinity_GG_33747_c0_g1_i3,blat.proc3825178.chain_2831	2
scaffold_1	spliced_intron	907269	907398	-	asmbl_35	none	STRG.48.3	1	STRG.48.2	1
scaffold_20	starts_in_intron	5115667	5115667	+	asmbl_26603	none	Trinity_GG_30078_c0_g1_i7,blat.proc3825176.chain_326	2	blat.proc3825176.chain_322	1
scaffold_5	retained_intron	6933262	6933389	+	asmbl_45466	none	blat.proc3825166.chain_2323	1	blat.proc3825166.chain_2322	1
scaffold_11	retained_exon	176273	176323	+	asmbl_5266	none	blat.proc3825170.chain_1810	1	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	4
scaffold_3	retained_intron	9518813	9518999	+	asmbl_40225,asmbl_40226	none	Trinity_GG_19245_c0_g1_i2,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i7,blat.proc3825164.chain_3674,blat.proc3825164.chain_3675,blat.proc3825164.chain_3676	6	STRG.3436.1,STRG.3436.2,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3677,blat.proc3825164.chain_3678	5
scaffold_2	ends_in_intron	10123385	10123385	+	asmbl_24693	none	STRG.2199.1	1	Trinity_GG_18555_c0_g1_i2	1
scaffold_9	spliced_intron	11777366	11777484	+	asmbl_54379	none	STRG.11489.1	1	Trinity_GG_23725_c0_g1_i1,blat.proc3825170.chain_312	2
scaffold_25	alt_donor	9119403	9119404	+	asmbl_33782	none	STRG.27725.5,blat.proc3825178.chain_859,blat.proc3825178.chain_862	3	STRG.27725.3,STRG.27725.4,STRG.27725.6	3
scaffold_2	skipped_exon	6510601	6512748	-	asmbl_23206	none	STRG.2013.1,blat.proc3825148.chain_2016	2	STRG.2013.3	1
scaffold_17	skipped_exon	9826533	9829262	-	asmbl_18200,asmbl_18201,asmbl_18202,asmbl_18203	none	STRG.20598.2,STRG.20598.3,blat.proc3825158.chain_1555,blat.proc3825158.chain_1558	4	STRG.20598.1,STRG.20598.4,STRG.20598.5,blat.proc3825158.chain_1556,blat.proc3825158.chain_1557	5
scaffold_25	alt_acceptor	4588448	4588449	-	asmbl_34212,asmbl_34213	none	STRG.27396.1,STRG.27396.3,blat.proc3825162.chain_725,blat.proc3825162.chain_726	4	STRG.27396.2	1
scaffold_15	ends_in_intron	13042510	13042510	+	asmbl_15615	none	blat.proc3825172.chain_3407	1	STRG.18741.1,Trinity_GG_27606_c0_g2_i2,blat.proc3825172.chain_3406,blat.proc3825172.chain_3409	4
scaffold_9	spliced_intron	6396897	6397036	-	asmbl_55053	none	STRG.11174.1,blat.proc3825152.chain_3362	2	blat.proc3825152.chain_3363	1
scaffold_23	retained_intron	4900167	4900265	+	asmbl_31534,asmbl_31535	none	Trinity_GG_31591_c0_g1_i2,Trinity_GG_31591_c0_g1_i5,blat.proc3825176.chain_2818,blat.proc3825176.chain_2819	4	STRG.25884.1,STRG.25884.2,STRG.25884.3,STRG.25884.4,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817	8
scaffold_20	retained_intron	1080419	1081286	-	asmbl_25527	none	STRG.22815.2,Trinity_GG_12736_c0_g1_i2,Trinity_GG_12736_c1_g1_i1,blat.proc3825158.chain_3679,blat.proc3825158.chain_3680	5	STRG.22815.1,blat.proc3825158.chain_3678	2
scaffold_10	spliced_intron	9554427	9554812	+	asmbl_3402,asmbl_3403	none	STRG.12711.1,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1287	3	blat.proc3825170.chain_1284	1
scaffold_20	alt_acceptor	2365629	2365630	+	asmbl_26483	none	STRG.22969.2	1	STRG.22969.1	1
scaffold_20	retained_intron	7806737	7806925	-	asmbl_25924	none	Trinity_GG_13035_c1_g1_i1,blat.proc3825160.chain_455	2	STRG.23331.1,STRG.23331.2,blat.proc3825160.chain_453,blat.proc3825160.chain_454	4
scaffold_6	retained_intron	7516477	7516579	-	asmbl_48499,asmbl_48501	none	STRG.7655.2,blat.proc3825152.chain_15	2	STRG.7655.1,blat.proc3825152.chain_13	2
scaffold_13	alt_acceptor	3923287	3923288	-	asmbl_9591,asmbl_9592	none	STRG.15720.1,STRG.15720.2,blat.proc3825156.chain_577,blat.proc3825156.chain_578	4	STRG.15720.3	1
scaffold_16	alt_donor	4721204	4721205	+	asmbl_16199,asmbl_16200	none	STRG.19254.2,STRG.19254.3,blat.proc3825174.chain_49	3	STRG.19254.1,blat.proc3825174.chain_50	2
scaffold_11	alt_acceptor	9695662	9695663	-	asmbl_6953	none	STRG.13992.2	1	STRG.13992.3,STRG.13992.5,blat.proc3825154.chain_2533,blat.proc3825154.chain_2534	4
scaffold_11	starts_in_intron	14585551	14585551	+	asmbl_6099,asmbl_6100	none	blat.proc3825170.chain_2701,blat.proc3825170.chain_2702	2	STRG.14259.1,STRG.14259.2,STRG.14259.3,blat.proc3825170.chain_2699,blat.proc3825170.chain_2703	5
scaffold_5	retained_intron	16650755	16650859	+	asmbl_46112	none	Trinity_GG_21054_c0_g1_i2,Trinity_GG_21054_c0_g1_i5,blat.proc3825166.chain_3025,blat.proc3825166.chain_3026	4	STRG.6855.1,STRG.6855.2,STRG.6855.3,Trinity_GG_21054_c0_g1_i1,blat.proc3825166.chain_3027,blat.proc3825166.chain_3028,blat.proc3825166.chain_3029	7
scaffold_24	alt_donor	6855414	6855415	-	asmbl_32992	none	STRG.26740.2,blat.proc3825162.chain_113	2	STRG.26740.1,blat.proc3825162.chain_112	2
scaffold_2	retained_intron	2871451	2871540	-	asmbl_22944	none	blat.proc3825148.chain_1661	1	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1662,blat.proc3825148.chain_1663,blat.proc3825148.chain_1664	5
scaffold_12	retained_intron	7422321	7422854	-	asmbl_8583,asmbl_8587	none	STRG.14825.1,blat.proc3825154.chain_3339,blat.proc3825154.chain_3340,blat.proc3825154.chain_3341	4	STRG.14825.2,blat.proc3825154.chain_3338	2
scaffold_1	starts_in_intron	5202083	5202083	+	asmbl_1711,asmbl_1712	none	blat.proc3825164.chain_466,blat.proc3825164.chain_475	2	STRG.329.1,STRG.329.2,STRG.329.3,blat.proc3825164.chain_467,blat.proc3825164.chain_469,blat.proc3825164.chain_473,blat.proc3825164.chain_476	7
scaffold_24	retained_intron	8737517	8737605	-	asmbl_33101	none	blat.proc3825162.chain_183	1	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_184	4
scaffold_12	alt_acceptor	12064818	12064819	+	asmbl_7973	none	STRG.15122.1,blat.proc3825170.chain_3608	2	STRG.15122.2	1
scaffold_2	starts_in_intron	9302955	9302955	-	asmbl_23378	none	blat.proc3825148.chain_2206	1	STRG.2175.1,blat.proc3825148.chain_2205	2
scaffold_24	retained_exon	7734049	7734093	-	asmbl_33056	none	STRG.26824.1	1	STRG.26824.2	1
scaffold_19	alt_acceptor	1612500	1612501	+	asmbl_21249	none	STRG.21916.2,blat.proc3825174.chain_2958	2	STRG.21916.1,Trinity_GG_29432_c0_g1_i3,blat.proc3825174.chain_2957,blat.proc3825174.chain_2959	4
scaffold_18	starts_in_intron	1617089	1617089	+	asmbl_20369	none	Trinity_GG_28887_c1_g1_i2	1	STRG.21051.1,blat.proc3825174.chain_1977,blat.proc3825174.chain_1980	3
scaffold_18	retained_intron	1434071	1434201	+	asmbl_20353	none	Trinity_GG_28875_c0_g1_i1,blat.proc3825174.chain_1959	2	STRG.21030.2,Trinity_GG_28875_c0_g1_i2,blat.proc3825174.chain_1958	3
scaffold_3	alt_acceptor	4288600	4288601	+	asmbl_39996	none	STRG.3135.1	1	STRG.3135.3	1
scaffold_7	alternate_exon	18394647	18394963	-	asmbl_51480	none	blat.proc3825152.chain_2020	1	Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2014,blat.proc3825152.chain_2017	4
scaffold_6	alt_donor	12697745	12697746	-	asmbl_48844	none	STRG.8028.1,Trinity_GG_4533_c0_g1_i1,blat.proc3825152.chain_375	3	STRG.8028.2,Trinity_GG_4533_c0_g1_i3,blat.proc3825152.chain_376	3
scaffold_7	alt_donor	11851032	11851033	+	asmbl_50194	none	STRG.9305.1,blat.proc3825168.chain_1812	2	STRG.9305.3,blat.proc3825168.chain_1811,blat.proc3825168.chain_1813	3
scaffold_9	starts_in_intron	9990327	9990327	-	asmbl_55249	none	blat.proc3825152.chain_3537	1	STRG.11363.1,STRG.11363.2,blat.proc3825152.chain_3536,blat.proc3825152.chain_3538	4
scaffold_5	retained_intron	420430	420561	-	asmbl_43775	none	STRG.5612.1	1	blat.proc3825150.chain_1845	1
scaffold_6	starts_in_intron	19115868	19115868	-	asmbl_49304	none	Trinity_GG_4894_c0_g1_i5	1	STRG.8585.1,STRG.8585.3,STRG.8585.5,Trinity_GG_4894_c0_g1_i1,Trinity_GG_4894_c0_g1_i2,blat.proc3825152.chain_1021,blat.proc3825152.chain_1022	7
scaffold_3	retained_exon	13958772	13958806	-	asmbl_39313	none	STRG.3739.2,Trinity_GG_2059_c0_g1_i2,blat.proc3825148.chain_3641	3	STRG.3739.1,Trinity_GG_2059_c0_g1_i1,blat.proc3825148.chain_3640	3
scaffold_18	ends_in_intron	7536361	7536361	+	asmbl_20748	none	blat.proc3825174.chain_2483	1	STRG.21457.1,blat.proc3825174.chain_2482	2
scaffold_21	spliced_intron	8129161	8131427	-	asmbl_27891,asmbl_27892,asmbl_27895	none	STRG.24349.5,blat.proc3825160.chain_1508,blat.proc3825160.chain_1509,blat.proc3825160.chain_1512	4	STRG.24349.1,Trinity_GG_13590_c0_g1_i7,Trinity_GG_13590_c2_g1_i1,Trinity_GG_13590_c4_g1_i1,blat.proc3825160.chain_1513,blat.proc3825160.chain_1515,blat.proc3825160.chain_1517	7
scaffold_21	ends_in_intron	6953939	6953939	-	asmbl_27762	none	Trinity_GG_13457_c0_g1_i3,blat.proc3825160.chain_1291	2	STRG.24224.1,blat.proc3825160.chain_1293	2
scaffold_15	alternate_exon	14633945	14634907	-	asmbl_14733	none	STRG.18877.2,blat.proc3825156.chain_3749	2	blat.proc3825156.chain_3747	1
scaffold_2	spliced_intron	7924289	7924370	-	asmbl_23295,asmbl_23296	none	STRG.2089.1,blat.proc3825148.chain_2075,blat.proc3825148.chain_2077	3	blat.proc3825148.chain_2078,blat.proc3825148.chain_2079	2
scaffold_19	spliced_intron	96182	96601	-	asmbl_21981	none	STRG.21827.1,Trinity_GG_12176_c0_g1_i1,blat.proc3825158.chain_2673	3	Trinity_GG_12176_c0_g1_i3,blat.proc3825158.chain_2672	2
scaffold_20	retained_intron	7185087	7185348	-	asmbl_25883	none	Trinity_GG_12999_c0_g1_i1,blat.proc3825160.chain_385	2	STRG.23287.1,blat.proc3825160.chain_384	2
scaffold_13	spliced_intron	2338672	2339178	+	asmbl_10597,asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605,asmbl_10607	none	STRG.15564.10,STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.9,blat.proc3825172.chain_222,blat.proc3825172.chain_224	8	STRG.15564.8	1
scaffold_1	retained_intron	13433544	13433580	-	asmbl_802	none	STRG.960.2,Trinity_GG_494_c0_g1_i2,blat.proc3825148.chain_925	3	STRG.960.1,blat.proc3825148.chain_926	2
scaffold_4	alt_donor	19605367	19605368	-	asmbl_43471	none	STRG.5550.4	1	STRG.5550.1,STRG.5550.2	2
scaffold_2	retained_exon	11258793	11258873	+	asmbl_24745,asmbl_24746	none	STRG.2257.1,STRG.2257.2,blat.proc3825164.chain_2416,blat.proc3825164.chain_2418	4	STRG.2257.3,blat.proc3825164.chain_2417	2
scaffold_18	retained_intron	11296913	11297076	-	asmbl_20128	none	Trinity_GG_12116_c0_g1_i4,blat.proc3825158.chain_2567	2	STRG.21674.1,STRG.21674.2,blat.proc3825158.chain_2566,blat.proc3825158.chain_2568	4
scaffold_23	retained_intron	245837	246226	-	asmbl_30569	none	Trinity_GG_14293_c0_g1_i2,blat.proc3825160.chain_2707	2	STRG.25548.2,blat.proc3825160.chain_2706	2
scaffold_16	alt_donor	3869732	3869733	-	asmbl_17008	none	STRG.19196.2,blat.proc3825158.chain_333	2	STRG.19196.1,blat.proc3825158.chain_332	2
scaffold_26	alternate_exon	9514230	9514351	+	asmbl_35240	none	STRG.28502.2	1	STRG.28502.1,blat.proc3825178.chain_1624	2
scaffold_18	alt_acceptor	2394186	2394187	-	asmbl_19724	none	Trinity_GG_11836_c0_g1_i4,blat.proc3825158.chain_2096	2	STRG.21118.1	1
scaffold_23	starts_in_intron	1699363	1699363	-	asmbl_30674	none	STRG.25651.1,blat.proc3825160.chain_2781	2	STRG.25651.2,blat.proc3825160.chain_2780	2
scaffold_23	starts_in_intron	2325649	2325649	+	asmbl_31395	none	Trinity_GG_31501_c0_g1_i4,Trinity_GG_34135_c0_g1_i1	2	STRG.25705.1,STRG.25705.2	2
scaffold_20	starts_in_intron	5117472	5117472	+	asmbl_26606	none	Trinity_GG_30079_c0_g1_i2,blat.proc3825176.chain_327	2	STRG.23148.1,Trinity_GG_30079_c0_g1_i1,blat.proc3825176.chain_328	3
scaffold_27	alt_acceptor	314755	314756	-	asmbl_36660	none	blat.proc3825162.chain_1728	1	STRG.28557.3	1
scaffold_26	retained_exon	4332659	4332682	-	asmbl_35546	none	STRG.28149.1	1	STRG.28149.2,STRG.28149.5	2
scaffold_24	starts_in_intron	5301636	5301636	-	asmbl_32888	none	blat.proc3825162.chain_19	1	STRG.26620.1,blat.proc3825162.chain_20	2
scaffold_13	ends_in_intron	4601822	4601822	-	asmbl_9639	none	STRG.15796.3,Trinity_GG_8874_c0_g1_i1,blat.proc3825156.chain_667	3	STRG.15796.1,Trinity_GG_8874_c0_g1_i5,Trinity_GG_8874_c0_g1_i6,blat.proc3825156.chain_662,blat.proc3825156.chain_665,blat.proc3825156.chain_666,blat.proc3825156.chain_670,blat.proc3825156.chain_673	8
scaffold_7	spliced_intron	13196688	13197769	-	asmbl_51297,asmbl_51298,asmbl_51300	none	STRG.9431.1,blat.proc3825152.chain_1783,blat.proc3825152.chain_1785,blat.proc3825152.chain_1788	4	Trinity_GG_5301_c0_g1_i11,blat.proc3825152.chain_1782,blat.proc3825152.chain_1784,blat.proc3825152.chain_1789	4
scaffold_4	alt_donor	13195139	13195140	-	asmbl_42984	none	STRG.4963.2,blat.proc3825150.chain_1136	2	STRG.4963.1,STRG.4963.3,blat.proc3825150.chain_1135,blat.proc3825150.chain_1137	4
scaffold_22	alt_donor	230313	230314	-	asmbl_29077	none	STRG.24683.5	1	STRG.24683.1,STRG.24683.2,STRG.24683.3,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1904,blat.proc3825160.chain_1905,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	9
scaffold_11	alt_donor	16529973	16529974	+	asmbl_6158	none	STRG.14343.1,blat.proc3825170.chain_2857	2	STRG.14343.2	1
scaffold_1	alt_acceptor	1908451	1908452	+	asmbl_1516,asmbl_1518	none	STRG.119.3,blat.proc3825164.chain_170	2	STRG.119.1,STRG.119.2,blat.proc3825164.chain_172	3
scaffold_21	alternate_exon	7506749	7506801	-	asmbl_27830	none	STRG.24282.2	1	STRG.24282.3,blat.proc3825160.chain_1440	2
scaffold_21	retained_exon	7117027	7117148	+	asmbl_28712	none	STRG.24236.1,Trinity_GG_30742_c0_g1_i1,blat.proc3825176.chain_1450	3	STRG.24236.2	1
scaffold_11	starts_in_intron	8096972	8096972	+	asmbl_5723	none	STRG.13822.3,Trinity_GG_24917_c0_g1_i1,blat.proc3825170.chain_2346	3	STRG.13822.1,STRG.13822.2,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2344,blat.proc3825170.chain_2347	6
scaffold_14	spliced_intron	11572188	11574063	-	asmbl_13501	none	blat.proc3825156.chain_2302	1	STRG.17499.1,STRG.17499.4,Trinity_GG_9808_c0_g1_i5,Trinity_GG_9808_c0_g2_i1,blat.proc3825156.chain_2305	5
scaffold_14	starts_in_intron	14641521	14641521	+	asmbl_12553	none	Trinity_GG_27046_c0_g1_i1,blat.proc3825172.chain_2429	2	STRG.17727.1,blat.proc3825172.chain_2430	2
scaffold_25	retained_intron	5696565	5696676	-	asmbl_34276	none	blat.proc3825162.chain_858	1	STRG.27468.1,blat.proc3825162.chain_855,blat.proc3825162.chain_857	3
scaffold_6	spliced_intron	2909054	2909178	+	asmbl_46785,asmbl_46789,asmbl_46790	none	STRG.7298.2,Trinity_GG_21339_c0_g1_i1,Trinity_GG_21339_c0_g1_i9,blat.proc3825166.chain_3530,blat.proc3825166.chain_3531	5	Trinity_GG_21339_c0_g1_i4,blat.proc3825166.chain_3533	2
scaffold_19	alternate_exon	8178142	8178200	-	asmbl_22278	none	STRG.22266.2,Trinity_GG_12410_c0_g1_i1,blat.proc3825158.chain_3073	3	STRG.22266.1,blat.proc3825158.chain_3074	2
scaffold_11	starts_in_intron	8432385	8432385	+	asmbl_5772	none	Trinity_GG_24892_c0_g2_i3,blat.proc3825170.chain_2304	2	STRG.13861.1,STRG.13861.3,Trinity_GG_24892_c0_g2_i1,Trinity_GG_24892_c0_g2_i4,blat.proc3825170.chain_2302,blat.proc3825170.chain_2305	6
scaffold_8	skipped_exon	7304586	7307284	-	asmbl_51895	none	STRG.10061.2,blat.proc3825152.chain_2326	2	STRG.10061.1,blat.proc3825152.chain_2327	2
scaffold_25	retained_intron	3615584	3615675	+	asmbl_33434	none	STRG.27306.2	1	STRG.27306.1	1
scaffold_14	alt_acceptor	1375638	1375639	-	asmbl_12875,asmbl_12876,asmbl_12878	none	STRG.16791.1,STRG.16791.2,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625	4	blat.proc3825156.chain_1626	1
scaffold_6	retained_intron	1750960	1751447	-	asmbl_48113,asmbl_48118,asmbl_48121	none	STRG.7232.3,STRG.7232.6,blat.proc3825150.chain_3308,blat.proc3825150.chain_3309,blat.proc3825150.chain_3314	5	STRG.7232.7	1
scaffold_12	alt_acceptor	12801723	12801724	+	asmbl_8022	none	STRG.15177.1,blat.proc3825170.chain_3619	2	STRG.15177.2,blat.proc3825170.chain_3621	2
scaffold_16	ends_in_intron	8086391	8086391	-	asmbl_17227	none	Trinity_GG_10909_c1_g1_i1,blat.proc3825158.chain_575	2	STRG.19454.1,blat.proc3825158.chain_576	2
scaffold_10	alternate_exon	3318058	3318111	-	asmbl_4187	none	Trinity_GG_6763_c0_g1_i1,blat.proc3825154.chain_695	2	STRG.12164.2,blat.proc3825154.chain_694	2
scaffold_7	retained_intron	4934589	4935841	+	asmbl_49766	none	STRG.8852.5,blat.proc3825168.chain_1350	2	STRG.8852.1,STRG.8852.2,STRG.8852.3,STRG.8852.4,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1351,blat.proc3825168.chain_1352	11
scaffold_2	spliced_intron	15451380	15451457	+	asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25041,asmbl_25042,asmbl_25044	none	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809,blat.proc3825164.chain_2810,blat.proc3825164.chain_2812	9	blat.proc3825164.chain_2811	1
scaffold_11	spliced_intron	8398703	8399332	+	asmbl_5763	none	STRG.13857.3,blat.proc3825170.chain_2394	2	STRG.13857.2,Trinity_GG_24940_c0_g1_i11,blat.proc3825170.chain_2391,blat.proc3825170.chain_2393,blat.proc3825170.chain_2395,blat.proc3825170.chain_2396,blat.proc3825170.chain_2397	7
scaffold_1	ends_in_intron	13520625	13520625	-	asmbl_818	none	blat.proc3825148.chain_946	1	STRG.965.1,STRG.965.2,blat.proc3825148.chain_944,blat.proc3825148.chain_945	4
scaffold_14	alt_donor	12707520	12707521	-	asmbl_13590	none	STRG.17584.1	1	STRG.17584.2	1
scaffold_13	starts_in_intron	4606866	4606866	-	asmbl_9639,asmbl_9643	none	STRG.15796.3,Trinity_GG_8874_c0_g1_i15,blat.proc3825156.chain_669	3	STRG.15796.1,blat.proc3825156.chain_670	2
scaffold_11	skipped_exon	3091771	3092702	+	asmbl_5400	none	STRG.13431.1	1	STRG.13431.2,blat.proc3825170.chain_1961	2
scaffold_5	alternate_exon	6568549	6568635	+	asmbl_45440	none	blat.proc3825166.chain_2218	1	STRG.6054.1,STRG.6054.2,STRG.6054.3,blat.proc3825166.chain_2217	4
scaffold_7	starts_in_intron	13015989	13015989	-	asmbl_51282	none	Trinity_GG_5313_c5_g1_i1,blat.proc3825152.chain_1817	2	STRG.9415.1	1
scaffold_13	retained_exon	7527864	7527966	-	asmbl_9898	none	STRG.16048.2,Trinity_GG_9022_c0_g1_i4,blat.proc3825156.chain_947	3	STRG.16048.1,Trinity_GG_9022_c0_g1_i1,blat.proc3825156.chain_946	3
scaffold_14	ends_in_intron	2919062	2919062	-	asmbl_12992	none	blat.proc3825156.chain_1737	1	STRG.16895.1,blat.proc3825156.chain_1738	2
scaffold_5	ends_in_intron	4668057	4668057	-	asmbl_43977	none	STRG.5923.3,blat.proc3825150.chain_2125	2	STRG.5923.1,STRG.5923.2,blat.proc3825150.chain_2124	3
scaffold_20	spliced_intron	1469616	1469860	-	asmbl_25576,asmbl_25578	none	blat.proc3825158.chain_3736,blat.proc3825158.chain_3738	2	STRG.22868.1,STRG.22868.3,Trinity_GG_12770_c1_g1_i7,blat.proc3825158.chain_3737,blat.proc3825158.chain_3740	5
scaffold_13	alt_donor	272420	272421	+	asmbl_10465	none	STRG.15434.1,blat.proc3825172.chain_198	2	STRG.15434.3,blat.proc3825172.chain_196	2
scaffold_18	starts_in_intron	10296395	10296395	-	asmbl_20105	none	blat.proc3825158.chain_2540	1	STRG.21630.2	1
scaffold_16	alt_acceptor	5804953	5804954	+	asmbl_16227,asmbl_16228	none	STRG.19326.1,Trinity_GG_27849_c0_g1_i1,Trinity_GG_27849_c0_g1_i4,blat.proc3825174.chain_148,blat.proc3825174.chain_150	5	STRG.19326.3	1
scaffold_7	retained_exon	15033538	15033597	-	asmbl_51354	none	STRG.9526.1	1	STRG.9526.2	1
scaffold_2	alt_donor	14021377	14021378	+	asmbl_24868,asmbl_24870	none	STRG.2398.1,Trinity_GG_18647_c0_g1_i1,blat.proc3825164.chain_2574,blat.proc3825164.chain_2577	4	STRG.2398.2	1
scaffold_1	alternate_exon	11167710	11168153	+	asmbl_2074	none	STRG.741.1,blat.proc3825164.chain_872	2	STRG.741.2	1
scaffold_9	retained_exon	9531883	9531909	-	asmbl_55189	none	STRG.11314.1,blat.proc3825152.chain_3548	2	STRG.11314.2,blat.proc3825152.chain_3549,blat.proc3825152.chain_3550	3
scaffold_16	retained_exon	10105152	10105224	+	asmbl_16517	none	STRG.19593.2,blat.proc3825174.chain_480	2	STRG.19593.1,blat.proc3825174.chain_481	2
scaffold_16	starts_in_intron	7221841	7221841	-	asmbl_17167	none	blat.proc3825158.chain_481	1	STRG.19399.1,STRG.19399.2,STRG.19399.3	3
scaffold_19	retained_intron	13192750	13192828	-	asmbl_22618	none	Trinity_GG_12588_c1_g1_i9,blat.proc3825158.chain_3437	2	blat.proc3825158.chain_3434	1
scaffold_1	alt_donor	20135245	20135246	-	asmbl_1172,asmbl_1174	none	STRG.1386.1,STRG.1386.7	2	STRG.1386.2,STRG.1386.5,STRG.1386.6,blat.proc3825148.chain_1398	4
scaffold_11	skipped_exon	3607163	3608883	-	asmbl_6557	none	STRG.13491.2,blat.proc3825154.chain_2072	2	STRG.13491.1,blat.proc3825154.chain_2073	2
scaffold_16	retained_exon	1253217	1253352	-	asmbl_16939	none	STRG.19087.1,blat.proc3825158.chain_222	2	STRG.19087.2,blat.proc3825158.chain_224	2
scaffold_25	alt_donor	1296791	1296792	+	asmbl_33372	none	STRG.27172.1	1	blat.proc3825162.chain_540	1
scaffold_20	alt_donor	5924087	5924088	-	asmbl_25791	none	STRG.23199.4,blat.proc3825160.chain_276	2	STRG.23199.3,blat.proc3825160.chain_278,blat.proc3825160.chain_279,blat.proc3825160.chain_280	4
scaffold_20	spliced_intron	7899285	7899371	-	asmbl_25942	none	STRG.23342.2,Trinity_GG_13010_c1_g1_i1,blat.proc3825160.chain_409	3	STRG.23342.1,Trinity_GG_13010_c1_g1_i2,blat.proc3825160.chain_408	3
scaffold_25	spliced_intron	7905410	7905469	-	asmbl_34415	none	blat.proc3825162.chain_920	1	STRG.27617.1	1
scaffold_23	alternate_exon	10938395	10942044	-	asmbl_31175	none	STRG.26299.2,Trinity_GG_14680_c0_g1_i1,blat.proc3825160.chain_3393,blat.proc3825160.chain_3417	4	blat.proc3825160.chain_3413,blat.proc3825160.chain_3414	2
scaffold_9	alternate_exon	13932223	13941490	-	asmbl_55464	none	STRG.11669.1,blat.proc3825154.chain_93	2	Trinity_GG_6414_c0_g1_i1,blat.proc3825154.chain_92	2
scaffold_11	retained_intron	171562	171780	+	asmbl_5262	none	blat.proc3825170.chain_1818	1	STRG.13244.1	1
scaffold_10	alternate_exon	6018576	6018961	-	asmbl_4419	none	blat.proc3825154.chain_1007	1	blat.proc3825154.chain_1006	1
scaffold_23	spliced_intron	10990900	10990994	-	asmbl_31187	none	STRG.26306.2	1	blat.proc3825160.chain_3397	1
scaffold_7	spliced_intron	12614841	12615086	+	asmbl_50278	none	STRG.9372.1,Trinity_GG_22488_c0_g1_i2,blat.proc3825168.chain_1849	3	STRG.9372.2,Trinity_GG_22488_c0_g1_i1,blat.proc3825168.chain_1850	3
scaffold_14	ends_in_intron	7290905	7290905	-	asmbl_13187	none	blat.proc3825156.chain_1959	1	STRG.17166.1,blat.proc3825156.chain_1957	2
scaffold_7	alt_donor	12346463	12346464	+	asmbl_50246	none	STRG.9328.2	1	STRG.9328.1,blat.proc3825168.chain_1858	2
scaffold_8	retained_intron	7804635	7804749	-	asmbl_51929	none	blat.proc3825152.chain_2317	1	STRG.10100.1,blat.proc3825152.chain_2313,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316,blat.proc3825152.chain_2318	6
scaffold_7	alternate_exon	8504960	8505180	+	asmbl_50003	none	STRG.9078.4	1	STRG.9078.1,STRG.9078.2,STRG.9078.3,blat.proc3825168.chain_1604,blat.proc3825168.chain_1607	5
scaffold_12	skipped_exon	3008799	3009809	-	asmbl_8345	none	STRG.14541.1,blat.proc3825154.chain_3019	2	STRG.14541.2	1
scaffold_3	spliced_intron	7739054	7739724	+	asmbl_40181	none	STRG.3365.2	1	STRG.3365.1,Trinity_GG_19228_c0_g1_i1,Trinity_GG_19228_c0_g1_i2,blat.proc3825164.chain_3642,blat.proc3825164.chain_3643,blat.proc3825164.chain_3644	6
scaffold_15	starts_in_intron	8797948	8797948	-	asmbl_14352	none	blat.proc3825156.chain_3313	1	STRG.18424.1,STRG.18424.3,blat.proc3825156.chain_3311,blat.proc3825156.chain_3314	4
scaffold_16	alt_acceptor	8579430	8579431	+	asmbl_16408	none	STRG.19485.2,blat.proc3825174.chain_353	2	STRG.19485.1,blat.proc3825174.chain_356,blat.proc3825174.chain_357	3
scaffold_4	alt_acceptor	12694264	12694265	+	asmbl_41736	none	STRG.4908.2,Trinity_GG_20007_c0_g1_i1,blat.proc3825166.chain_1261	3	STRG.4908.1,Trinity_GG_20007_c0_g1_i2,blat.proc3825166.chain_1262	3
scaffold_23	starts_in_intron	10977173	10977173	+	asmbl_31899	none	Trinity_GG_31796_c0_g1_i6	1	STRG.26307.1,STRG.26307.2,STRG.26307.4,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	7
scaffold_5	alt_donor	18255894	18255895	+	asmbl_46227	none	STRG.6961.1,Trinity_GG_21150_c0_g1_i1,blat.proc3825166.chain_3197	3	Trinity_GG_21150_c0_g1_i4,blat.proc3825166.chain_3198	2
scaffold_13	alt_acceptor	6949079	6949080	-	asmbl_9821,asmbl_9822,asmbl_9823	none	STRG.15984.2,STRG.15984.3,STRG.15984.4	3	STRG.15984.5	1
scaffold_12	alt_acceptor	16728897	16728898	-	asmbl_9142	none	STRG.15418.2,Trinity_GG_8621_c0_g1_i5,blat.proc3825156.chain_221	3	STRG.15418.1,Trinity_GG_8621_c0_g1_i1,blat.proc3825156.chain_220	3
scaffold_14	alt_donor	9272347	9272348	-	asmbl_13365	none	blat.proc3825156.chain_2200,blat.proc3825156.chain_2207	2	STRG.17338.5	1
scaffold_14	starts_in_intron	12823944	12823944	-	asmbl_13617	none	STRG.17598.3,blat.proc3825156.chain_2460	2	STRG.17598.1,STRG.17598.2,STRG.17598.4,STRG.17598.5,Trinity_GG_9905_c0_g1_i1,blat.proc3825156.chain_2458,blat.proc3825156.chain_2461,blat.proc3825156.chain_2462,blat.proc3825156.chain_2464	9
scaffold_8	spliced_intron	11111045	11111142	+	asmbl_53197	none	STRG.10324.3,blat.proc3825168.chain_2896	2	STRG.10324.2,blat.proc3825168.chain_2893	2
scaffold_5	alt_acceptor	4696508	4696509	+	asmbl_45290	none	STRG.5925.3	1	STRG.5925.2,blat.proc3825166.chain_2149,blat.proc3825166.chain_2150	3
scaffold_15	ends_in_intron	15434823	15434823	-	asmbl_14787,asmbl_14788	none	blat.proc3825156.chain_3727,blat.proc3825156.chain_3729	2	STRG.18932.2,blat.proc3825156.chain_3728,blat.proc3825156.chain_3731,blat.proc3825156.chain_3733	4
scaffold_3	alt_acceptor	13720562	13720563	-	asmbl_39292	none	STRG.3718.2,Trinity_GG_2032_c0_g1_i1,blat.proc3825148.chain_3579	3	STRG.3718.1,Trinity_GG_2032_c0_g1_i3,Trinity_GG_2032_c0_g1_i4,blat.proc3825148.chain_3576,blat.proc3825148.chain_3577	5
scaffold_5	spliced_intron	6010030	6010122	+	asmbl_45390	none	STRG.6018.1,Trinity_GG_20607_c0_g1_i2,blat.proc3825166.chain_2248	3	STRG.6018.2	1
scaffold_9	alternate_exon	3666613	3667129	+	asmbl_53907	none	STRG.10971.1,Trinity_GG_23413_c0_g1_i4,blat.proc3825168.chain_3495	3	STRG.10971.2	1
scaffold_9	alt_acceptor	12785314	12785315	-	asmbl_55409	none	blat.proc3825154.chain_66	1	STRG.11598.1,blat.proc3825154.chain_67	2
scaffold_13	spliced_intron	2295238	2295321	+	asmbl_10588,asmbl_10590	none	STRG.15546.1,blat.proc3825172.chain_244,blat.proc3825172.chain_246	3	blat.proc3825172.chain_245	1
scaffold_5	starts_in_intron	17227316	17227316	+	asmbl_46154	none	blat.proc3825166.chain_3075	1	STRG.6896.1,STRG.6896.2,blat.proc3825166.chain_3073,blat.proc3825166.chain_3076	4
scaffold_14	retained_exon	14144219	14144317	+	asmbl_12523,asmbl_12525,asmbl_12528	none	STRG.17687.1,STRG.17687.3,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	4	STRG.17687.2,STRG.17687.4	2
scaffold_24	ends_in_intron	5931605	5931605	+	asmbl_32259	none	Trinity_GG_32084_c5_g1_i1,blat.proc3825176.chain_3685	2	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	12
scaffold_19	spliced_intron	5594710	5594731	+	asmbl_21384	none	blat.proc3825174.chain_3134	1	STRG.22121.1,Trinity_GG_29530_c0_g1_i1	2
scaffold_18	retained_intron	1886374	1887983	-	asmbl_19659	none	STRG.21081.6	1	STRG.21081.1,blat.proc3825158.chain_2010,blat.proc3825158.chain_2013,blat.proc3825158.chain_2018	4
scaffold_10	spliced_intron	1424584	1425202	+	asmbl_2931,asmbl_2932,asmbl_2933	none	STRG.12016.4,Trinity_GG_23995_c0_g1_i3,Trinity_GG_23995_c0_g1_i4,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_763,blat.proc3825170.chain_764,blat.proc3825170.chain_765	7	STRG.12016.1,STRG.12016.2,STRG.12016.3,STRG.12016.5,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_759,blat.proc3825170.chain_760,blat.proc3825170.chain_761,blat.proc3825170.chain_762	9
scaffold_7	spliced_intron	817670	817822	+	asmbl_49562,asmbl_49564,asmbl_49567	none	STRG.8623.1,STRG.8623.2,blat.proc3825168.chain_1125,blat.proc3825168.chain_1127	4	blat.proc3825168.chain_1129,blat.proc3825168.chain_1130	2
scaffold_4	ends_in_intron	3380835	3380835	+	asmbl_41190	none	Trinity_GG_19701_c1_g1_i1,blat.proc3825166.chain_750	2	STRG.4276.1,STRG.4276.2,blat.proc3825166.chain_748,blat.proc3825166.chain_749	4
scaffold_2	retained_intron	16288921	16289287	+	asmbl_25111,asmbl_25112,asmbl_25113	none	blat.proc3825164.chain_2850,blat.proc3825164.chain_2852,blat.proc3825164.chain_2853	3	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2851	3
scaffold_10	alt_acceptor	7668129	7668130	+	asmbl_3286,asmbl_3288,asmbl_3289,asmbl_3291	none	STRG.12555.1,STRG.12555.2,blat.proc3825170.chain_1181,blat.proc3825170.chain_1182,blat.proc3825170.chain_1183	5	STRG.12555.3	1
scaffold_28	alternate_exon	7225431	7228837	+	asmbl_37639	none	STRG.29787.2	1	blat.proc3825178.chain_2934	1
scaffold_17	alt_acceptor	9531392	9531393	+	asmbl_19103,asmbl_19106,asmbl_19107,asmbl_19108,asmbl_19109	none	STRG.20578.2,Trinity_GG_28562_c0_g1_i2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1395,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	9	blat.proc3825174.chain_1399	1
scaffold_8	retained_exon	16397528	16397566	-	asmbl_52385	none	STRG.10626.3,blat.proc3825152.chain_2849	2	blat.proc3825152.chain_2851	1
scaffold_1	retained_intron	9254163	9254609	+	asmbl_1968,asmbl_1971	none	STRG.619.1,STRG.619.2,Trinity_GG_17679_c0_g1_i2,blat.proc3825164.chain_722	4	STRG.619.4,Trinity_GG_17679_c0_g1_i4,blat.proc3825164.chain_723	3
scaffold_17	ends_in_intron	2741235	2741235	-	asmbl_17781	none	blat.proc3825158.chain_1132	1	STRG.20077.1,STRG.20077.2,blat.proc3825158.chain_1131,blat.proc3825158.chain_1133	4
scaffold_9	spliced_intron	16656777	16657454	-	asmbl_55603	none	STRG.11813.1,blat.proc3825154.chain_279	2	blat.proc3825154.chain_280,blat.proc3825154.chain_281	2
scaffold_1	alternate_exon	3525304	3525752	-	asmbl_159	none	STRG.220.4,blat.proc3825148.chain_195,blat.proc3825148.chain_196	3	STRG.220.2	1
scaffold_15	skipped_exon	14633432	14634492	-	asmbl_14736	none	STRG.18877.4	1	STRG.18877.1,STRG.18877.2,blat.proc3825156.chain_3749,blat.proc3825156.chain_3750	4
scaffold_12	starts_in_intron	11328489	11328489	-	asmbl_8796	none	Trinity_GG_8416_c0_g1_i2,blat.proc3825154.chain_3584	2	STRG.15071.1,STRG.15071.2	2
scaffold_8	spliced_intron	3615643	3615920	+	asmbl_52789	none	STRG.9863.4	1	STRG.9863.1,blat.proc3825168.chain_2410	2
scaffold_21	alt_acceptor	1802855	1802856	+	asmbl_28364,asmbl_28365	none	STRG.23826.1,STRG.23826.2,blat.proc3825176.chain_998,blat.proc3825176.chain_999	4	blat.proc3825176.chain_1000	1
scaffold_13	retained_intron	12105019	12105196	+	asmbl_11332	none	STRG.16347.2	1	STRG.16347.1,Trinity_GG_26304_c0_g1_i1,blat.proc3825172.chain_1152	3
scaffold_18	retained_exon	7241822	7241881	+	asmbl_20729	none	STRG.21430.1,blat.proc3825174.chain_2380	2	STRG.21430.2,blat.proc3825174.chain_2381	2
scaffold_3	starts_in_intron	3715844	3715844	+	asmbl_39959	none	blat.proc3825164.chain_3317	1	STRG.3091.1,blat.proc3825164.chain_3318	2
scaffold_10	starts_in_intron	3984629	3984629	+	asmbl_3096	none	Trinity_GG_24070_c0_g1_i2	1	STRG.12243.1	1
scaffold_2	ends_in_intron	4018647	4018647	-	asmbl_23037	none	blat.proc3825148.chain_1814	1	STRG.1846.1,blat.proc3825148.chain_1815	2
scaffold_10	alternate_exon	9071161	9071391	-	asmbl_4673	none	STRG.12658.2,blat.proc3825154.chain_1160	2	STRG.12658.1,STRG.12658.3,blat.proc3825154.chain_1159	3
scaffold_24	ends_in_intron	10583650	10583650	-	asmbl_33208	none	blat.proc3825162.chain_379	1	STRG.27016.1	1
scaffold_1	retained_intron	11173731	11174136	+	asmbl_2079,asmbl_2081,asmbl_2084,asmbl_2086	none	STRG.747.1,STRG.747.4,blat.proc3825164.chain_909,blat.proc3825164.chain_913,blat.proc3825164.chain_915	5	STRG.747.2,STRG.747.5,blat.proc3825164.chain_911,blat.proc3825164.chain_912	4
scaffold_3	starts_in_intron	801054	801054	-	asmbl_38675,asmbl_38676	none	STRG.2908.2,STRG.2908.4,Trinity_GG_1570_c1_g1_i1,blat.proc3825148.chain_2796	4	STRG.2908.1,blat.proc3825148.chain_2794	2
scaffold_13	alt_acceptor	6802315	6802316	+	asmbl_10976,asmbl_10979	none	STRG.15970.2,blat.proc3825172.chain_721	2	STRG.15970.1,blat.proc3825172.chain_720,blat.proc3825172.chain_723	3
scaffold_12	alternate_exon	4608896	4609576	-	asmbl_8416,asmbl_8417	none	STRG.14639.3,blat.proc3825154.chain_3142	2	STRG.14639.4,Trinity_GG_8168_c0_g1_i1,blat.proc3825154.chain_3139,blat.proc3825154.chain_3140,blat.proc3825154.chain_3141	5
scaffold_24	alternate_exon	2059086	2062154	-	asmbl_32769	none	STRG.26432.2,Trinity_GG_14785_c1_g1_i1,blat.proc3825160.chain_3526,blat.proc3825160.chain_3571	4	STRG.26432.4,Trinity_GG_14758_c0_g1_i2,blat.proc3825160.chain_3527	3
scaffold_14	skipped_exon	10424625	10426296	-	asmbl_13424	none	STRG.17393.2	1	STRG.17393.1,Trinity_GG_9766_c0_g1_i2,blat.proc3825156.chain_2233	3
scaffold_3	starts_in_intron	7727082	7727082	+	asmbl_40178	none	STRG.3360.1	1	blat.proc3825164.chain_3637,blat.proc3825164.chain_3638	2
scaffold_2	starts_in_intron	879430	879430	+	asmbl_24120	none	blat.proc3825164.chain_1707	1	STRG.1563.1,blat.proc3825164.chain_1708	2
scaffold_17	ends_in_intron	6203556	6203556	-	asmbl_17975	none	Trinity_GG_11408_c0_g1_i1,blat.proc3825158.chain_1335	2	STRG.20295.1,blat.proc3825158.chain_1336	2
scaffold_11	retained_intron	13257061	13257404	+	asmbl_6044	none	Trinity_GG_25137_c0_g1_i2,blat.proc3825170.chain_2730	2	STRG.14199.1,STRG.14199.2,blat.proc3825170.chain_2732	3
scaffold_3	starts_in_intron	8169388	8169388	-	asmbl_39012,asmbl_39021	none	blat.proc3825148.chain_3276,blat.proc3825148.chain_3278	2	Trinity_GG_1828_c3_g1_i4,blat.proc3825148.chain_3275,blat.proc3825148.chain_3277	3
scaffold_24	alternate_exon	4454239	4454304	+	asmbl_32202	none	blat.proc3825176.chain_3501	1	STRG.26606.1	1
scaffold_8	spliced_intron	4350354	4350381	+	asmbl_52842	none	STRG.9918.2	1	STRG.9918.1,Trinity_GG_22808_c0_g1_i3,Trinity_GG_22808_c0_g1_i4	3
scaffold_2	starts_in_intron	944118	944118	+	asmbl_24166,asmbl_24167	none	STRG.1574.3,STRG.1574.4	2	STRG.1574.1,STRG.1574.2,Trinity_GG_18238_c0_g2_i1,blat.proc3825164.chain_1775	4
scaffold_8	ends_in_intron	4240964	4240964	-	asmbl_51772	none	blat.proc3825152.chain_2103	1	STRG.9906.1,blat.proc3825152.chain_2101,blat.proc3825152.chain_2102	3
scaffold_14	skipped_exon	8231446	8232235	-	asmbl_13261,asmbl_13262	none	STRG.17241.2,blat.proc3825156.chain_1986,blat.proc3825156.chain_1987	3	blat.proc3825156.chain_1988	1
scaffold_20	alt_acceptor	11078627	11078628	-	asmbl_26131	none	STRG.23624.2,blat.proc3825160.chain_595	2	STRG.23624.1,blat.proc3825160.chain_592,blat.proc3825160.chain_594	3
scaffold_19	ends_in_intron	4829081	4829081	-	asmbl_22139	none	blat.proc3825158.chain_2891	1	STRG.22064.1,blat.proc3825158.chain_2890	2
scaffold_5	retained_exon	10381188	10381380	-	asmbl_44351,asmbl_44352,asmbl_44353,asmbl_44356	none	STRG.6339.1,STRG.6339.2,blat.proc3825150.chain_2516,blat.proc3825150.chain_2518	4	blat.proc3825150.chain_2517	1
scaffold_19	alt_acceptor	8213429	8213430	-	asmbl_22282	none	STRG.22270.1,blat.proc3825158.chain_3082	2	STRG.22270.2,STRG.22270.3,blat.proc3825158.chain_3080,blat.proc3825158.chain_3081	4
scaffold_3	starts_in_intron	4277707	4277707	+	asmbl_39992	none	STRG.3125.3,blat.proc3825164.chain_3364	2	STRG.3125.1,STRG.3125.2,blat.proc3825164.chain_3362,blat.proc3825164.chain_3363	4
scaffold_13	alt_donor	16460349	16460350	-	asmbl_10301,asmbl_10304,asmbl_10305	none	STRG.16703.1,STRG.16703.4,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1485,blat.proc3825156.chain_1489	5	STRG.16703.3,Trinity_GG_9330_c0_g1_i3,Trinity_GG_9330_c0_g1_i5,blat.proc3825156.chain_1487,blat.proc3825156.chain_1488	5
scaffold_17	retained_intron	3998584	3998705	+	asmbl_18753,asmbl_18754,asmbl_18755,asmbl_18758,asmbl_18759	none	STRG.20160.1,STRG.20160.3,STRG.20160.4,blat.proc3825174.chain_1032,blat.proc3825174.chain_1033,blat.proc3825174.chain_1034	6	STRG.20160.2,blat.proc3825174.chain_1035	2
scaffold_6	starts_in_intron	13985727	13985727	-	asmbl_48968,asmbl_48969	none	blat.proc3825152.chain_611	1	STRG.8159.1,blat.proc3825152.chain_614,blat.proc3825152.chain_615	3
scaffold_10	starts_in_intron	17117663	17117663	+	asmbl_3743	none	Trinity_GG_24556_c1_g1_i1,blat.proc3825170.chain_1735	2	STRG.13156.1,STRG.13156.3,blat.proc3825170.chain_1736	3
scaffold_16	alt_donor	125643	125644	+	asmbl_15998	none	Trinity_GG_27742_c0_g1_i1,blat.proc3825172.chain_3682	2	STRG.19007.2,STRG.19007.3,Trinity_GG_27742_c0_g1_i2,blat.proc3825172.chain_3685	4
scaffold_24	alternate_exon	2962922	2964799	-	asmbl_32808	none	blat.proc3825160.chain_3585	1	STRG.26507.2	1
scaffold_28	spliced_intron	5611858	5612155	-	asmbl_38300	none	STRG.29697.5,Trinity_GG_16664_c0_g1_i1,blat.proc3825162.chain_2900	3	STRG.29697.4,Trinity_GG_16664_c0_g1_i6,blat.proc3825162.chain_2898	3
scaffold_17	retained_intron	6808283	6808733	+	asmbl_18878	none	STRG.20335.2,Trinity_GG_28412_c2_g1_i1,blat.proc3825174.chain_1114	3	STRG.20335.3	1
scaffold_7	alt_acceptor	12618437	12618438	+	asmbl_50281	none	STRG.9373.2	1	STRG.9373.1,blat.proc3825168.chain_1903	2
scaffold_810	retained_intron	2605	2957	+	asmbl_53678	none	blat.proc3825178.chain_3684,blat.proc3825178.chain_3686	2	STRG.30479.1	1
scaffold_6	spliced_intron	4316646	4317616	+	asmbl_46879,asmbl_46880,asmbl_46881	none	STRG.7409.1,STRG.7409.2,blat.proc3825166.chain_3612,blat.proc3825166.chain_3613,blat.proc3825166.chain_3614	5	STRG.7409.3,Trinity_GG_21371_c1_g1_i1,blat.proc3825166.chain_3616	3
scaffold_6	starts_in_intron	8645478	8645478	-	asmbl_48580	none	blat.proc3825152.chain_122	1	STRG.7755.1,STRG.7755.2,blat.proc3825152.chain_121	3
scaffold_5	retained_intron	10132156	10132315	+	asmbl_45657	none	Trinity_GG_20746_c0_g1_i1,blat.proc3825166.chain_2506	2	STRG.6309.1,Trinity_GG_20746_c0_g1_i2,blat.proc3825166.chain_2507	3
scaffold_19	alt_donor	6663737	6663738	+	asmbl_21426	none	STRG.22181.1,blat.proc3825174.chain_3190	2	STRG.22181.2	1
scaffold_22	retained_intron	6945536	6945630	-	asmbl_29349	none	blat.proc3825160.chain_2178	1	STRG.25012.1,blat.proc3825160.chain_2177	2
scaffold_4	skipped_exon	19371845	19374246	+	asmbl_42136	none	blat.proc3825166.chain_1812	1	STRG.5525.1,blat.proc3825166.chain_1814	2
scaffold_1	alt_acceptor	20135302	20135303	-	asmbl_1170,asmbl_1174	none	STRG.1386.5,STRG.1386.7	2	blat.proc3825148.chain_1398	1
scaffold_13	alt_acceptor	5127484	5127485	+	asmbl_10828,asmbl_10829	none	STRG.15817.2,STRG.15817.3	2	STRG.15817.1,blat.proc3825172.chain_557,blat.proc3825172.chain_558,blat.proc3825172.chain_559	4
scaffold_17	starts_in_intron	12385244	12385244	-	asmbl_18324,asmbl_18327,asmbl_18328	none	STRG.20776.1,STRG.20776.2,STRG.20776.4	3	STRG.20776.3	1
scaffold_17	spliced_intron	8158916	8159004	+	asmbl_18937,asmbl_18938,asmbl_18940	none	STRG.20433.1,STRG.20433.2,blat.proc3825174.chain_1265	3	blat.proc3825174.chain_1263	1
scaffold_22	retained_exon	691600	691681	+	asmbl_29881,asmbl_29882	none	STRG.24719.1,STRG.24719.2,Trinity_GG_30979_c0_g1_i1,Trinity_GG_30979_c0_g1_i3,blat.proc3825176.chain_1847	5	STRG.24719.3	1
scaffold_9	alt_acceptor	8028271	8028272	-	asmbl_55114,asmbl_55116	none	STRG.11231.2,STRG.11231.3,blat.proc3825152.chain_3476	3	STRG.11231.1,blat.proc3825152.chain_3477	2
scaffold_18	retained_intron	4077684	4077771	+	asmbl_20495	none	Trinity_GG_28969_c0_g1_i2,blat.proc3825174.chain_2125	2	STRG.21208.1,blat.proc3825174.chain_2124	2
scaffold_3	spliced_intron	6218352	6218491	-	asmbl_38930	none	STRG.3267.2	1	STRG.3267.3,Trinity_GG_1744_c0_g2_i1,blat.proc3825148.chain_3067	3
scaffold_12	starts_in_intron	2770860	2770860	-	asmbl_8329	none	blat.proc3825154.chain_2990	1	STRG.14524.1,blat.proc3825154.chain_2989	2
scaffold_10	starts_in_intron	975801	975801	-	asmbl_4018,asmbl_4021	none	blat.proc3825154.chain_471,blat.proc3825154.chain_472	2	STRG.11979.1,STRG.11979.2,Trinity_GG_6637_c0_g1_i3,Trinity_GG_6637_c0_g1_i5,Trinity_GG_6637_c0_g1_i6,Trinity_GG_6637_c0_g1_i9	6
scaffold_15	retained_intron	4500541	4500727	+	asmbl_15151	none	Trinity_GG_27277_c0_g2_i1,blat.proc3825172.chain_2832	2	STRG.18181.1,blat.proc3825172.chain_2829,blat.proc3825172.chain_2830,blat.proc3825172.chain_2831	4
scaffold_723	retained_intron	2724	3247	-	asmbl_51617,asmbl_51619	none	STRG.30450.2,Trinity_GG_17081_c0_g1_i7,blat.proc3825162.chain_3544,blat.proc3825162.chain_3547	4	STRG.30450.1,STRG.30450.3,STRG.30450.4,Trinity_GG_17081_c0_g1_i4,blat.proc3825162.chain_3548,blat.proc3825162.chain_3549,blat.proc3825162.chain_3550	7
scaffold_26	spliced_intron	4136117	4136364	-	asmbl_35530,asmbl_35531,asmbl_35533	none	STRG.28116.1,STRG.28116.3,STRG.28116.4,blat.proc3825162.chain_1393	4	STRG.28116.2,blat.proc3825162.chain_1394,blat.proc3825162.chain_1395	3
scaffold_28	alt_donor	4209683	4209684	+	asmbl_37521,asmbl_37522	none	STRG.29616.6,blat.proc3825178.chain_2813	2	STRG.29616.1,STRG.29616.4,STRG.29616.5,blat.proc3825178.chain_2809,blat.proc3825178.chain_2815	5
scaffold_17	spliced_intron	14646820	14646843	-	asmbl_18441,asmbl_18442	none	blat.proc3825158.chain_1903,blat.proc3825158.chain_1904	2	STRG.20937.1,Trinity_GG_11743_c0_g1_i2	2
scaffold_11	alt_acceptor	8331356	8331357	+	asmbl_5751	none	Trinity_GG_24932_c0_g1_i2,blat.proc3825170.chain_2371	2	STRG.13849.1,Trinity_GG_24932_c0_g1_i1,blat.proc3825170.chain_2372	3
scaffold_28	alt_acceptor	1641122	1641123	+	asmbl_37316,asmbl_37317,asmbl_37318	none	STRG.29352.1,STRG.29352.3,blat.proc3825178.chain_2562,blat.proc3825178.chain_2563	4	STRG.29352.2	1
scaffold_8	skipped_exon	5760911	5762372	+	asmbl_52907	none	STRG.9995.1	1	Trinity_GG_22872_c0_g1_i1,blat.proc3825168.chain_2557	2
scaffold_28	skipped_exon	539383	539895	-	asmbl_37910,asmbl_37911,asmbl_37912	none	STRG.29277.2,STRG.29277.3,blat.proc3825162.chain_2443	3	STRG.29277.1,blat.proc3825162.chain_2442	2
scaffold_1	skipped_exon	6830975	6831856	-	asmbl_383	none	STRG.474.2,blat.proc3825148.chain_463	2	STRG.474.1,blat.proc3825148.chain_465	2
scaffold_21	alternate_exon	254754	255542	-	asmbl_27291	none	blat.proc3825160.chain_807	1	Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_813	2
scaffold_2	spliced_intron	19127889	19127928	+	asmbl_25265	none	blat.proc3825164.chain_2970	1	STRG.2788.1	1
scaffold_11	retained_exon	4333202	4333222	-	asmbl_6600	none	STRG.13525.2	1	STRG.13525.1,blat.proc3825154.chain_2133,blat.proc3825154.chain_2135	3
scaffold_6	alt_donor	4536423	4536424	-	asmbl_48337	none	STRG.7434.5	1	STRG.7434.1,blat.proc3825150.chain_3583	2
scaffold_7	spliced_intron	10910943	10910963	-	asmbl_51144	none	STRG.9251.2	1	STRG.9251.3,blat.proc3825152.chain_1600	2
scaffold_15	alt_acceptor	12436771	12436772	+	asmbl_15569,asmbl_15573	none	STRG.18701.1,blat.proc3825172.chain_3343	2	blat.proc3825172.chain_3337,blat.proc3825172.chain_3341	2
scaffold_22	retained_exon	9719007	9719198	+	asmbl_30316	none	STRG.25308.2	1	STRG.25308.4	1
scaffold_26	alternate_exon	1978559	1978585	+	asmbl_34725	none	STRG.27941.1	1	STRG.27941.2	1
scaffold_11	retained_intron	9832457	9832783	+	asmbl_5907,asmbl_5910,asmbl_5914	none	STRG.14008.3,Trinity_GG_25038_c0_g1_i2,blat.proc3825170.chain_2558,blat.proc3825170.chain_2559	4	STRG.14008.1,STRG.14008.2,STRG.14008.4,STRG.14008.5,Trinity_GG_25038_c0_g1_i10,blat.proc3825170.chain_2556,blat.proc3825170.chain_2557,blat.proc3825170.chain_2563,blat.proc3825170.chain_2564,blat.proc3825170.chain_2565	10
scaffold_1	retained_intron	15880705	15881317	+	asmbl_2452	none	Trinity_GG_17990_c0_g1_i1,blat.proc3825164.chain_1297	2	STRG.1114.1,blat.proc3825164.chain_1298	2
scaffold_20	alt_donor	1624268	1624269	-	asmbl_25594	none	STRG.22899.2	1	STRG.22899.1,STRG.22899.3	2
scaffold_3	alt_acceptor	10631427	10631428	+	asmbl_40279,asmbl_40280,asmbl_40281,asmbl_40283,asmbl_40284,asmbl_40286,asmbl_40289,asmbl_40290	none	STRG.3513.1,STRG.3513.2,STRG.3513.3,STRG.3513.4,STRG.3513.5,STRG.3513.6,blat.proc3825164.chain_3682,blat.proc3825164.chain_3684,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688,blat.proc3825164.chain_3689,blat.proc3825164.chain_3691	13	STRG.3513.7,Trinity_GG_19247_c1_g1_i1	2
scaffold_18	starts_in_intron	854901	854901	-	asmbl_19606	none	blat.proc3825158.chain_1959	1	STRG.21011.1,blat.proc3825158.chain_1960	2
scaffold_17	starts_in_intron	8845709	8845709	+	asmbl_19024	none	Trinity_GG_28543_c0_g1_i6,blat.proc3825174.chain_1355	2	STRG.20495.1,STRG.20495.2,blat.proc3825174.chain_1351,blat.proc3825174.chain_1353	4
scaffold_5	alt_donor	5738215	5738216	+	asmbl_45361,asmbl_45363	none	STRG.5992.4,STRG.5992.6,blat.proc3825166.chain_2131	3	STRG.5992.5,blat.proc3825166.chain_2135	2
scaffold_723	retained_exon	2439	2510	-	asmbl_51618,asmbl_51619,asmbl_51620	none	STRG.30450.1,STRG.30450.3,blat.proc3825162.chain_3547,blat.proc3825162.chain_3550	4	STRG.30450.2,STRG.30450.4,blat.proc3825162.chain_3548	3
scaffold_1	alt_acceptor	18029282	18029283	-	asmbl_1078	none	blat.proc3825164.chain_1345	1	STRG.1268.5	1
scaffold_5	alternate_exon	10534506	10534616	-	asmbl_44360	none	STRG.6342.2,blat.proc3825150.chain_2542	2	STRG.6342.1,blat.proc3825150.chain_2541	2
scaffold_18	starts_in_intron	4573079	4573079	+	asmbl_20530	none	blat.proc3825174.chain_2220	1	STRG.21248.1,STRG.21248.2,blat.proc3825174.chain_2216,blat.proc3825174.chain_2217,blat.proc3825174.chain_2218,blat.proc3825174.chain_2219	6
scaffold_27	alternate_exon	9098168	9098350	+	asmbl_36501,asmbl_36503,asmbl_36504	none	STRG.29163.1,blat.proc3825178.chain_2361,blat.proc3825178.chain_2362,blat.proc3825178.chain_2364	4	blat.proc3825178.chain_2363,blat.proc3825178.chain_2365	2
scaffold_4	starts_in_intron	17698530	17698530	-	asmbl_43309	none	blat.proc3825150.chain_1479	1	STRG.5370.1,blat.proc3825150.chain_1478	2
scaffold_24	ends_in_intron	3881411	3881411	-	asmbl_32858	none	Trinity_GG_14866_c0_g1_i1,blat.proc3825160.chain_3704	2	STRG.26567.1	1
scaffold_15	alt_acceptor	12008633	12008634	-	asmbl_14553	none	STRG.18664.1,blat.proc3825156.chain_3538,blat.proc3825156.chain_3542	3	blat.proc3825156.chain_3540	1
scaffold_10	alternate_exon	17058026	17058082	-	asmbl_5028	none	STRG.13149.3	1	STRG.13149.2	1
scaffold_24	alternate_exon	5840196	5840427	+	asmbl_32233	none	STRG.26646.1,blat.proc3825176.chain_3591	2	STRG.26646.2,blat.proc3825176.chain_3590	2
scaffold_11	alternate_exon	3544403	3553921	+	asmbl_5451	none	STRG.13482.1,blat.proc3825170.chain_2029,blat.proc3825170.chain_2031	3	STRG.13482.2,Trinity_GG_24726_c0_g1_i2,blat.proc3825170.chain_2030	3
scaffold_2	alternate_exon	18991540	18996419	-	asmbl_23843	none	STRG.2782.1	1	STRG.2782.2	1
scaffold_25	retained_intron	6325646	6326095	-	asmbl_34358	none	Trinity_GG_15459_c0_g2_i1,blat.proc3825162.chain_944	2	STRG.27519.1,STRG.27519.2,blat.proc3825162.chain_939,blat.proc3825162.chain_941,blat.proc3825162.chain_942,blat.proc3825162.chain_943	6
scaffold_17	ends_in_intron	6881009	6881009	-	asmbl_18004	none	blat.proc3825158.chain_1372	1	STRG.20346.1,blat.proc3825158.chain_1373	2
scaffold_6	starts_in_intron	18079006	18079006	+	asmbl_47814	none	Trinity_GG_21993_c0_g1_i4	1	STRG.8492.1,STRG.8492.2,Trinity_GG_21993_c0_g1_i3,blat.proc3825168.chain_972	4
scaffold_4	spliced_intron	3237101	3237225	-	asmbl_42423,asmbl_42424,asmbl_42425,asmbl_42426	none	STRG.4249.1,STRG.4249.2,STRG.4249.3,STRG.4249.4,blat.proc3825150.chain_493	5	Trinity_GG_2372_c0_g1_i5,Trinity_GG_2372_c0_g1_i7,blat.proc3825150.chain_492,blat.proc3825150.chain_494	4
scaffold_7	ends_in_intron	17808076	17808076	+	asmbl_50499	none	blat.proc3825168.chain_2137	1	STRG.9628.1,blat.proc3825168.chain_2133,blat.proc3825168.chain_2134	3
scaffold_28	alt_donor	761504	761505	-	asmbl_37932	none	STRG.29291.4,blat.proc3825162.chain_2382	2	STRG.29291.1,STRG.29291.3,blat.proc3825162.chain_2381,blat.proc3825162.chain_2383	4
scaffold_2	alt_acceptor	2995469	2995470	-	asmbl_22950	none	STRG.1746.1	1	STRG.1746.2	1
scaffold_7	retained_exon	689481	689645	+	asmbl_49556	none	STRG.8604.1,blat.proc3825168.chain_1104	2	STRG.8604.3,STRG.8604.4	2
scaffold_14	retained_intron	12154408	12154530	+	asmbl_12416	none	Trinity_GG_26957_c0_g1_i3,blat.proc3825172.chain_2278	2	STRG.17548.1,blat.proc3825172.chain_2280	2
scaffold_4	retained_exon	1877964	1878008	+	asmbl_41133	none	STRG.4206.1,blat.proc3825166.chain_669	2	STRG.4206.2,blat.proc3825166.chain_668	2
scaffold_3	starts_in_intron	14519945	14519945	-	asmbl_39389	none	Trinity_GG_2106_c0_g1_i5,blat.proc3825148.chain_3748	2	STRG.3792.1,Trinity_GG_2106_c0_g1_i2,Trinity_GG_2106_c0_g1_i4,blat.proc3825148.chain_3749,blat.proc3825150.chain_1	5
scaffold_17	alternate_exon	9569214	9571578	+	asmbl_19117,asmbl_19118	none	STRG.20579.1,STRG.20579.2,blat.proc3825174.chain_1453,blat.proc3825174.chain_1454	4	Trinity_GG_28588_c0_g1_i1,blat.proc3825174.chain_1455	2
scaffold_14	spliced_intron	15469046	15469737	+	asmbl_12600,asmbl_12601	none	STRG.17781.1,Trinity_GG_27042_c0_g1_i6,blat.proc3825172.chain_2425	3	blat.proc3825172.chain_2424	1
scaffold_2	alt_donor	9296966	9296967	+	asmbl_24680	none	STRG.2173.2,Trinity_GG_18506_c0_g1_i2,blat.proc3825164.chain_2300	3	STRG.2173.1,Trinity_GG_18506_c0_g1_i1,blat.proc3825164.chain_2301	3
scaffold_21	starts_in_intron	1053475	1053475	-	asmbl_27375	none	Trinity_GG_13262_c0_g1_i7,blat.proc3825160.chain_923	2	STRG.23787.1,STRG.23787.2,Trinity_GG_13262_c0_g1_i1,Trinity_GG_13262_c0_g1_i12,Trinity_GG_13262_c0_g1_i2,Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_922,blat.proc3825160.chain_924,blat.proc3825160.chain_925,blat.proc3825160.chain_926	10
scaffold_24	alt_acceptor	6801440	6801441	-	asmbl_32981,asmbl_32983	none	STRG.26730.2,blat.proc3825162.chain_89	2	STRG.26730.1,STRG.26730.3,Trinity_GG_14947_c0_g1_i1,blat.proc3825162.chain_91,blat.proc3825162.chain_92	5
scaffold_13	retained_intron	8955171	8955239	+	asmbl_11163	none	STRG.16167.1,blat.proc3825172.chain_870	2	STRG.16167.2,STRG.16167.3,blat.proc3825172.chain_867,blat.proc3825172.chain_868,blat.proc3825172.chain_871	5
scaffold_16	alt_donor	6189726	6189727	+	asmbl_16291	none	STRG.19369.2,Trinity_GG_27882_c0_g1_i2,blat.proc3825174.chain_208	3	STRG.19369.1,Trinity_GG_27882_c0_g1_i1,Trinity_GG_27882_c0_g1_i3,blat.proc3825174.chain_210	4
scaffold_3	starts_in_intron	4770154	4770154	-	asmbl_38818	none	Trinity_GG_1702_c0_g1_i1	1	STRG.3179.1,blat.proc3825148.chain_2999	2
scaffold_7	alt_donor	18360234	18360235	-	asmbl_51463	none	STRG.9667.2	1	STRG.9667.1,blat.proc3825152.chain_2024,blat.proc3825152.chain_2025	3
scaffold_11	spliced_intron	13256180	13256322	+	asmbl_6041	none	STRG.14199.2,blat.proc3825170.chain_2729	2	STRG.14199.1,Trinity_GG_25137_c0_g1_i5,blat.proc3825170.chain_2731,blat.proc3825170.chain_2732	4
scaffold_9	alt_donor	15991483	15991484	-	asmbl_55562	none	STRG.11773.2	1	STRG.11773.1,blat.proc3825154.chain_232	2
scaffold_2205	starts_in_intron	483	483	+	asmbl_30543	none	Trinity_GG_34277_c0_g1_i1,blat.proc3825178.chain_3671	2	STRG.30725.1,blat.proc3825178.chain_3670	2
scaffold_12	alt_acceptor	7351773	7351774	+	asmbl_7750	none	STRG.14815.2	1	STRG.14815.1,blat.proc3825170.chain_3353	2
scaffold_9	alternate_exon	2796321	2797004	+	asmbl_53862	none	STRG.10918.3,Trinity_GG_23372_c0_g1_i10,blat.proc3825168.chain_3432	3	STRG.10918.2,STRG.10918.5,Trinity_GG_23372_c0_g1_i5,Trinity_GG_23372_c0_g1_i7,blat.proc3825168.chain_3429,blat.proc3825168.chain_3431	6
scaffold_15	starts_in_intron	6960710	6960710	+	asmbl_15269	none	blat.proc3825172.chain_2906	1	STRG.18305.1	1
scaffold_8	retained_exon	15594	15665	-	asmbl_51680	none	STRG.9703.2,blat.proc3825152.chain_2075	2	STRG.9703.3,blat.proc3825152.chain_2072,blat.proc3825152.chain_2074	3
scaffold_23	retained_exon	6988881	6988988	-	asmbl_30996,asmbl_30997	none	STRG.26022.1,STRG.26022.2,blat.proc3825160.chain_3166,blat.proc3825160.chain_3167	4	STRG.26022.3	1
scaffold_16	retained_intron	5487668	5488014	-	asmbl_17111	none	Trinity_GG_10796_c0_g1_i1,blat.proc3825158.chain_360	2	STRG.19302.1,STRG.19302.2,Trinity_GG_10796_c0_g1_i2,Trinity_GG_10796_c0_g1_i3,blat.proc3825158.chain_358,blat.proc3825158.chain_359	6
scaffold_24	skipped_exon	9592148	9592961	-	asmbl_33138	none	STRG.26947.3	1	STRG.26947.1,STRG.26947.2,blat.proc3825162.chain_297	3
scaffold_27	spliced_intron	512659	512738	-	asmbl_36697,asmbl_36698	none	STRG.28572.3,blat.proc3825162.chain_1809	2	STRG.28572.1,STRG.28572.2,Trinity_GG_15987_c0_g1_i2,blat.proc3825162.chain_1810	4
scaffold_9	ends_in_intron	16562732	16562732	-	asmbl_55589	none	blat.proc3825154.chain_273	1	STRG.11806.1,STRG.11806.2,STRG.11806.3,STRG.11806.4,STRG.11806.5,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274	10
scaffold_3	alt_acceptor	4543329	4543330	+	asmbl_40016	none	STRG.3152.2	1	STRG.3152.1	1
scaffold_7	alt_donor	7923708	7923709	-	asmbl_50980	none	blat.proc3825152.chain_1442	1	STRG.9043.1,blat.proc3825152.chain_1441,blat.proc3825152.chain_1443	3
scaffold_18	spliced_intron	1434071	1434201	+	asmbl_20352	none	STRG.21030.2,Trinity_GG_28875_c0_g1_i2,blat.proc3825174.chain_1958	3	Trinity_GG_28875_c0_g1_i1,blat.proc3825174.chain_1959	2
scaffold_4	skipped_exon	18931654	18932432	-	asmbl_43391	none	STRG.5475.2,blat.proc3825150.chain_1623	2	STRG.5475.1,blat.proc3825150.chain_1624	2
scaffold_5	spliced_intron	18562167	18562393	+	asmbl_46268,asmbl_46269,asmbl_46273	none	STRG.6987.1,STRG.6987.3,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i7,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	8	STRG.6987.2,STRG.6987.4,Trinity_GG_21132_c0_g1_i15,blat.proc3825166.chain_3150	4
scaffold_18	ends_in_intron	2153290	2153290	-	asmbl_19713	none	blat.proc3825158.chain_2029	1	STRG.21115.1,STRG.21115.2,blat.proc3825158.chain_2028	3
scaffold_14	spliced_intron	8371335	8371512	-	asmbl_13296	none	STRG.17270.1,Trinity_GG_9648_c1_g1_i1,blat.proc3825156.chain_2017	3	STRG.17270.2	1
scaffold_4	alternate_exon	8991066	8991360	-	asmbl_42799,asmbl_42801	none	STRG.4718.1,STRG.4718.3,blat.proc3825150.chain_817	3	STRG.4718.4	1
scaffold_3	spliced_intron	11526115	11526216	+	asmbl_40359	none	STRG.3584.1,Trinity_GG_19328_c1_g1_i2,blat.proc3825166.chain_82	3	Trinity_GG_19328_c1_g1_i1,blat.proc3825166.chain_83	2
scaffold_13	retained_intron	8237557	8237860	-	asmbl_9961	none	blat.proc3825156.chain_1037	1	STRG.16116.1,blat.proc3825156.chain_1035,blat.proc3825156.chain_1038	3
scaffold_2	retained_intron	2076731	2076946	+	asmbl_24233,asmbl_24234,asmbl_24235	none	STRG.1662.1,STRG.1662.2,Trinity_GG_18249_c0_g1_i1,Trinity_GG_18249_c0_g1_i2,Trinity_GG_18249_c0_g1_i3,blat.proc3825164.chain_1803,blat.proc3825164.chain_1804,blat.proc3825164.chain_1805	8	blat.proc3825164.chain_1806	1
scaffold_19	ends_in_intron	10823958	10823958	-	asmbl_22352	none	STRG.22423.1,Trinity_GG_12463_c0_g1_i1,blat.proc3825158.chain_3157	3	blat.proc3825158.chain_3158	1
scaffold_2	alt_acceptor	18614288	18614289	-	asmbl_23807	none	blat.proc3825148.chain_2647	1	STRG.2737.1,blat.proc3825148.chain_2649	2
scaffold_4	spliced_intron	19379217	19379340	+	asmbl_42136	none	Trinity_GG_20347_c0_g1_i4,blat.proc3825166.chain_1813	2	STRG.5525.1,blat.proc3825166.chain_1814	2
scaffold_22	retained_exon	10682010	10682197	-	asmbl_29616	none	STRG.25415.1,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608	3	blat.proc3825160.chain_2610	1
scaffold_5	spliced_intron	10974515	10975047	+	asmbl_45717	none	STRG.6379.1,Trinity_GG_20753_c1_g1_i2,blat.proc3825166.chain_2527	3	Trinity_GG_20753_c1_g1_i4	1
scaffold_22	alt_acceptor	7437544	7437545	-	asmbl_29398,asmbl_29399	none	STRG.25084.1,STRG.25084.2,blat.proc3825160.chain_2245,blat.proc3825160.chain_2246	4	STRG.25084.3,STRG.25084.4,STRG.25084.5,blat.proc3825160.chain_2247,blat.proc3825160.chain_2248	5
scaffold_13	starts_in_intron	311945	311945	+	asmbl_10475	none	Trinity_GG_25790_c0_g1_i2,blat.proc3825172.chain_146	2	STRG.15433.1,Trinity_GG_25790_c0_g1_i1,blat.proc3825172.chain_147	3
scaffold_17	alt_acceptor	14546319	14546320	+	asmbl_19415	none	STRG.20928.3	1	STRG.20928.2	1
scaffold_6	spliced_intron	18716897	18717097	+	asmbl_47846	none	STRG.8538.2	1	STRG.8538.1,Trinity_GG_21982_c0_g1_i3,Trinity_GG_21982_c0_g1_i4,blat.proc3825168.chain_945,blat.proc3825168.chain_946	5
scaffold_19	ends_in_intron	1038476	1038476	+	asmbl_21230	none	blat.proc3825174.chain_2869	1	STRG.21896.1,blat.proc3825174.chain_2871	2
scaffold_12	ends_in_intron	7169771	7169771	-	asmbl_8558	none	Trinity_GG_8246_c0_g1_i1,blat.proc3825154.chain_3288	2	STRG.14793.1,blat.proc3825154.chain_3287	2
scaffold_20	alternate_exon	786496	786804	+	asmbl_26379	none	blat.proc3825174.chain_3697	1	STRG.22782.1,blat.proc3825174.chain_3698	2
scaffold_6	retained_intron	11463538	11463675	-	asmbl_48756	none	blat.proc3825152.chain_341	1	STRG.7938.1,blat.proc3825152.chain_342,blat.proc3825152.chain_343	3
scaffold_3	retained_intron	17094055	17094262	-	asmbl_39536,asmbl_39538	none	STRG.3949.1,Trinity_GG_2181_c0_g1_i2,blat.proc3825150.chain_130	3	STRG.3949.2,blat.proc3825150.chain_131	2
scaffold_11	starts_in_intron	9717648	9717648	-	asmbl_6960	none	blat.proc3825154.chain_2522	1	STRG.13988.1,blat.proc3825154.chain_2523	2
scaffold_7	alternate_exon	6623395	6623529	+	asmbl_49868	none	STRG.8935.1,STRG.8935.2,Trinity_GG_22249_c0_g1_i1,blat.proc3825168.chain_1432	4	STRG.8935.3,STRG.8935.4,Trinity_GG_22249_c1_g1_i1,blat.proc3825168.chain_1433	4
scaffold_8	alternate_exon	11826620	11828873	+	asmbl_53272,asmbl_53273	none	STRG.10387.1,blat.proc3825168.chain_2982	2	STRG.10387.2	1
scaffold_3	alternate_exon	6244978	6245037	-	asmbl_38935,asmbl_38937	none	STRG.3271.4,blat.proc3825148.chain_3136,blat.proc3825148.chain_3140	3	STRG.3271.1,STRG.3271.2,STRG.3271.5,STRG.3271.6,blat.proc3825148.chain_3138,blat.proc3825148.chain_3139,blat.proc3825148.chain_3141,blat.proc3825148.chain_3143	8
scaffold_18	ends_in_intron	5584792	5584792	-	asmbl_19865	none	blat.proc3825158.chain_2271	1	STRG.21314.1,STRG.21314.2,blat.proc3825158.chain_2238,blat.proc3825158.chain_2269,blat.proc3825158.chain_2270	5
scaffold_14	retained_exon	8451918	8452010	-	asmbl_13316	none	Trinity_GG_9713_c0_g1_i2	1	Trinity_GG_9713_c0_g1_i1	1
scaffold_21	retained_exon	9707077	9707192	-	asmbl_27961	none	STRG.24431.1	1	STRG.24431.2	1
scaffold_6	spliced_intron	5930657	5931098	+	asmbl_46982	none	STRG.7543.1,blat.proc3825166.chain_3726	2	STRG.7543.2,blat.proc3825166.chain_3725	2
scaffold_13	starts_in_intron	11539299	11539299	+	asmbl_11274,asmbl_11275	none	blat.proc3825172.chain_1024,blat.proc3825172.chain_1027	2	STRG.16304.1,blat.proc3825172.chain_1022	2
scaffold_8	retained_intron	10793464	10793556	+	asmbl_53183	none	STRG.10305.1,blat.proc3825168.chain_2848	2	STRG.10305.2,blat.proc3825168.chain_2846	2
scaffold_18	alt_donor	6609205	6609206	-	asmbl_19907	none	STRG.21375.1	1	STRG.21375.2	1
scaffold_2	starts_in_intron	7816350	7816350	-	asmbl_23279	none	Trinity_GG_1148_c0_g1_i1,blat.proc3825148.chain_2088	2	STRG.2079.1,Trinity_GG_1148_c0_g1_i2,blat.proc3825148.chain_2086	3
scaffold_23	alt_acceptor	362285	362286	-	asmbl_30590,asmbl_30597	none	STRG.25564.4,Trinity_GG_14303_c0_g1_i4,blat.proc3825160.chain_2721,blat.proc3825160.chain_2726	4	blat.proc3825160.chain_2722	1
scaffold_1	retained_intron	12953093	12953198	-	asmbl_783,asmbl_785	none	STRG.923.1,STRG.923.3,blat.proc3825148.chain_898,blat.proc3825148.chain_899	4	STRG.923.2,blat.proc3825148.chain_897	2
scaffold_14	spliced_intron	12707267	12707317	-	asmbl_13589	none	STRG.17584.2	1	STRG.17584.1	1
scaffold_4	retained_intron	17537231	17537656	+	asmbl_42052	none	blat.proc3825166.chain_1714	1	STRG.5339.1,blat.proc3825166.chain_1713	2
scaffold_9	retained_exon	644077	644687	+	asmbl_53782	none	STRG.10793.3	1	STRG.10793.1,blat.proc3825168.chain_3345	2
scaffold_14	starts_in_intron	6685391	6685391	-	asmbl_13150	none	blat.proc3825156.chain_1918	1	STRG.17110.1,STRG.17110.2,blat.proc3825156.chain_1917	3
scaffold_28	spliced_intron	535489	536046	-	asmbl_37907	none	STRG.29276.2,blat.proc3825162.chain_2444	2	STRG.29276.1,Trinity_GG_16392_c1_g1_i2,Trinity_GG_16392_c2_g1_i1,blat.proc3825162.chain_2445,blat.proc3825162.chain_2446	5
scaffold_2	alt_donor	942971	942972	+	asmbl_24162	none	STRG.1574.1,Trinity_GG_18238_c0_g2_i1,blat.proc3825164.chain_1775	3	STRG.1574.2	1
scaffold_26	starts_in_intron	9312201	9312201	+	asmbl_35214,asmbl_35215,asmbl_35217,asmbl_35226	none	STRG.28487.2,blat.proc3825178.chain_1610,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	5	STRG.28487.1	1
scaffold_25	retained_intron	406193	406237	-	asmbl_33979	none	STRG.27086.1	1	STRG.27086.2	1
scaffold_28	alternate_exon	4204037	4204400	+	asmbl_37526	none	STRG.29616.2	1	STRG.29616.1	1
scaffold_28	ends_in_intron	1641829	1641829	+	asmbl_37318	none	blat.proc3825178.chain_2562	1	STRG.29352.1,STRG.29352.3,blat.proc3825178.chain_2563	3
scaffold_1	retained_intron	39649	39790	-	asmbl_8	none	blat.proc3825148.chain_64	1	STRG.11.1,STRG.11.2,STRG.11.3,blat.proc3825148.chain_63	4
scaffold_20	starts_in_intron	10385761	10385761	+	asmbl_26957	none	Trinity_GG_30302_c0_g1_i3,blat.proc3825176.chain_669	2	STRG.23583.1,STRG.23583.2,STRG.23583.3,STRG.23583.4,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_668,blat.proc3825176.chain_670,blat.proc3825176.chain_671,blat.proc3825176.chain_672	10
scaffold_12	skipped_exon	14104032	14104838	-	asmbl_8975,asmbl_8978,asmbl_8979,asmbl_8983,asmbl_8984	none	STRG.15241.1,Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i4,blat.proc3825156.chain_87,blat.proc3825156.chain_91,blat.proc3825156.chain_92,blat.proc3825156.chain_93,blat.proc3825156.chain_94	8	Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_88,blat.proc3825156.chain_95,blat.proc3825156.chain_96,blat.proc3825156.chain_97	6
scaffold_9	retained_intron	5220781	5220889	+	asmbl_54005	none	Trinity_GG_23456_c0_g1_i4,blat.proc3825168.chain_3555	2	STRG.11103.1,STRG.11103.2,STRG.11103.3,blat.proc3825168.chain_3556	4
scaffold_3	spliced_intron	6658616	6658787	+	asmbl_40104,asmbl_40108,asmbl_40110,asmbl_40115	none	STRG.3295.2,blat.proc3825164.chain_3559,blat.proc3825164.chain_3563,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567	5	STRG.3295.1,STRG.3295.3,STRG.3295.4,blat.proc3825164.chain_3558,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3564,blat.proc3825164.chain_3565,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	11
scaffold_6	retained_intron	12554228	12554438	-	asmbl_48830	none	blat.proc3825152.chain_427	1	STRG.8017.1,STRG.8017.2,STRG.8017.3,blat.proc3825152.chain_421,blat.proc3825152.chain_423	5
scaffold_10	alt_acceptor	8464052	8464053	-	asmbl_4591	none	STRG.12603.1,blat.proc3825154.chain_1210	2	STRG.12603.2,blat.proc3825154.chain_1209	2
scaffold_25	alternate_exon	881352	881397	-	asmbl_34010	none	STRG.27142.2,blat.proc3825162.chain_506	2	STRG.27142.1,blat.proc3825162.chain_505	2
scaffold_19	alt_acceptor	12246351	12246352	-	asmbl_22472	none	blat.proc3825158.chain_3312	1	STRG.22552.2,blat.proc3825158.chain_3309,blat.proc3825158.chain_3311	3
scaffold_13	retained_intron	14964496	14964531	+	asmbl_11478	none	STRG.16542.1,Trinity_GG_26401_c3_g1_i1	2	STRG.16542.3	1
scaffold_9	retained_intron	15396303	15396380	+	asmbl_54572	none	Trinity_GG_23876_c0_g1_i5,blat.proc3825170.chain_557	2	STRG.11741.1,STRG.11741.2,STRG.11741.3,Trinity_GG_23876_c0_g1_i2,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i7,Trinity_GG_23876_c0_g1_i8,blat.proc3825170.chain_552,blat.proc3825170.chain_553,blat.proc3825170.chain_555,blat.proc3825170.chain_556	11
scaffold_7	skipped_exon	5916256	5917155	-	asmbl_50901	none	STRG.8897.1,blat.proc3825152.chain_1287	2	STRG.8897.2,STRG.8897.3,blat.proc3825152.chain_1284,blat.proc3825152.chain_1285	4
scaffold_8	starts_in_intron	8559403	8559403	-	asmbl_51959	none	blat.proc3825152.chain_2409	1	STRG.10115.1,blat.proc3825152.chain_2410,blat.proc3825152.chain_2411	3
scaffold_4	spliced_intron	6332069	6332164	+	asmbl_41397	none	Trinity_GG_19811_c1_g1_i2,blat.proc3825166.chain_963	2	STRG.4502.1,Trinity_GG_19811_c1_g1_i1,blat.proc3825166.chain_962	3
scaffold_8	starts_in_intron	1832072	1832072	+	asmbl_52710	none	blat.proc3825168.chain_2322	1	blat.proc3825168.chain_2324	1
scaffold_12	alt_donor	14903754	14903755	+	asmbl_8095	none	STRG.15275.1,blat.proc3825172.chain_24	2	STRG.15275.2,blat.proc3825172.chain_25	2
scaffold_16	retained_exon	8463269	8463373	+	asmbl_16393	none	STRG.19472.1	1	STRG.19472.2	1
scaffold_21	retained_intron	524687	524895	+	asmbl_28273	none	Trinity_GG_30471_c0_g1_i2,blat.proc3825176.chain_962	2	STRG.23745.1,Trinity_GG_30471_c0_g1_i1,blat.proc3825176.chain_961	3
scaffold_2	alt_donor	2903629	2903630	-	asmbl_22945,asmbl_22947,asmbl_22949	none	STRG.1731.1,blat.proc3825148.chain_1611,blat.proc3825148.chain_1612,blat.proc3825148.chain_1615	4	STRG.1731.2,blat.proc3825148.chain_1613,blat.proc3825148.chain_1614	3
scaffold_2	retained_intron	885396	885480	+	asmbl_24123	none	blat.proc3825164.chain_1623	1	STRG.1564.2,STRG.1564.3,blat.proc3825164.chain_1624	3
scaffold_12	alt_acceptor	2768505	2768506	+	asmbl_7526	none	blat.proc3825170.chain_3027	1	STRG.14523.1,blat.proc3825170.chain_3028	2
scaffold_6	alt_acceptor	18836629	18836630	+	asmbl_47859	none	STRG.8556.6	1	STRG.8556.1,STRG.8556.2,STRG.8556.3,STRG.8556.4,STRG.8556.5,Trinity_GG_21987_c0_g1_i5,blat.proc3825168.chain_959,blat.proc3825168.chain_960,blat.proc3825168.chain_961,blat.proc3825168.chain_962,blat.proc3825168.chain_963	11
scaffold_14	alternate_exon	1605185	1605281	-	asmbl_12905	none	Trinity_GG_9375_c0_g1_i3,blat.proc3825156.chain_1574	2	STRG.16803.1,STRG.16803.2,Trinity_GG_9375_c0_g1_i1,Trinity_GG_9375_c0_g1_i2,blat.proc3825156.chain_1573,blat.proc3825156.chain_1576	6
scaffold_3	alt_donor	18937840	18937841	+	asmbl_40752	none	STRG.4067.2	1	STRG.4067.1,STRG.4067.3,STRG.4067.4	3
scaffold_25	alt_donor	5607607	5607608	-	asmbl_34265	none	STRG.27458.1,Trinity_GG_15406_c0_g1_i1,blat.proc3825162.chain_837	3	STRG.27458.2	1
scaffold_6	alt_acceptor	50363	50364	+	asmbl_46625	none	STRG.7061.1,Trinity_GG_21197_c0_g1_i1,blat.proc3825166.chain_3267	3	STRG.7061.2	1
scaffold_5	spliced_intron	16650755	16650859	+	asmbl_46113,asmbl_46114,asmbl_46115,asmbl_46116	none	STRG.6855.1,STRG.6855.2,STRG.6855.3,Trinity_GG_21054_c0_g1_i1,blat.proc3825166.chain_3027,blat.proc3825166.chain_3028,blat.proc3825166.chain_3029	7	Trinity_GG_21054_c0_g1_i2,Trinity_GG_21054_c0_g1_i5,blat.proc3825166.chain_3025,blat.proc3825166.chain_3026	4
scaffold_2	retained_exon	9195437	9195535	-	asmbl_23359,asmbl_23362,asmbl_23366	none	STRG.2171.1,blat.proc3825148.chain_2197,blat.proc3825148.chain_2198,blat.proc3825148.chain_2202	4	STRG.2171.2,blat.proc3825148.chain_2199,blat.proc3825148.chain_2201	3
scaffold_11	starts_in_intron	16255738	16255738	+	asmbl_6143	none	Trinity_GG_25170_c0_g1_i3,blat.proc3825170.chain_2792	2	STRG.14327.2	1
scaffold_7	alt_donor	12053972	12053973	+	asmbl_50205	none	STRG.9309.1,blat.proc3825168.chain_1831	2	STRG.9309.2,Trinity_GG_22477_c0_g1_i4,blat.proc3825168.chain_1830	3
scaffold_17	starts_in_intron	4697580	4697580	+	asmbl_18789	none	Trinity_GG_28350_c0_g1_i3,blat.proc3825174.chain_1022	2	STRG.20208.1,STRG.20208.2,blat.proc3825174.chain_1021	3
scaffold_11	ends_in_intron	7998512	7998512	-	asmbl_6815	none	Trinity_GG_7734_c0_g1_i1,blat.proc3825154.chain_2379	2	STRG.13806.1,blat.proc3825154.chain_2380	2
scaffold_10	alternate_exon	16258044	16258262	+	asmbl_3711	none	STRG.13106.4	1	STRG.13106.1,STRG.13106.3	2
scaffold_19	starts_in_intron	3423586	3423586	-	asmbl_22104	none	blat.proc3825158.chain_2857	1	STRG.22024.1	1
scaffold_21	alt_acceptor	6536217	6536218	+	asmbl_28662,asmbl_28666	none	STRG.24178.1,blat.proc3825176.chain_1391,blat.proc3825176.chain_1393	3	STRG.24178.2,blat.proc3825176.chain_1392	2
scaffold_19	retained_intron	11475869	11475988	-	asmbl_22398,asmbl_22400	none	STRG.22483.1,STRG.22483.2	2	STRG.22483.3	1
scaffold_1	spliced_intron	169539	169855	+	asmbl_1400	none	STRG.15.1,Trinity_GG_17335_c0_g2_i1,blat.proc3825164.chain_113	3	Trinity_GG_17335_c0_g1_i1,Trinity_GG_17335_c0_g1_i2,blat.proc3825164.chain_110,blat.proc3825164.chain_111	4
scaffold_6	ends_in_intron	13196978	13196978	+	asmbl_47488	none	Trinity_GG_21758_c1_g1_i2,blat.proc3825168.chain_596	2	STRG.8079.1,STRG.8079.2,Trinity_GG_21758_c1_g1_i1,blat.proc3825168.chain_597	4
scaffold_11	starts_in_intron	13645187	13645187	+	asmbl_6069	none	blat.proc3825170.chain_2724	1	STRG.14224.1,blat.proc3825170.chain_2723	2
scaffold_6	starts_in_intron	16951391	16951391	+	asmbl_47722	none	Trinity_GG_21920_c0_g1_i1,blat.proc3825168.chain_841	2	STRG.8412.1,blat.proc3825168.chain_842	2
scaffold_14	starts_in_intron	8233373	8233373	-	asmbl_13262	none	blat.proc3825156.chain_1986	1	STRG.17241.2,blat.proc3825156.chain_1987,blat.proc3825156.chain_1988	3
scaffold_13	alt_acceptor	3922791	3922792	-	asmbl_9592,asmbl_9593	none	STRG.15720.2,STRG.15720.3,blat.proc3825156.chain_577	3	STRG.15720.1,blat.proc3825156.chain_578	2
scaffold_28	spliced_intron	5024052	5024125	+	asmbl_37563,asmbl_37564	none	STRG.29654.1,STRG.29654.2,blat.proc3825178.chain_2770	3	STRG.29654.4,Trinity_GG_33717_c2_g1_i2,blat.proc3825178.chain_2769	3
scaffold_5	skipped_exon	237502	239376	-	asmbl_43763	none	STRG.5593.1	1	STRG.5593.2,STRG.5593.3,STRG.5593.4,blat.proc3825150.chain_1832	4
scaffold_1	starts_in_intron	6849122	6849122	-	asmbl_392	none	STRG.485.2	1	STRG.485.1	1
scaffold_17	alt_donor	11038780	11038781	-	asmbl_18260	none	STRG.20664.4,blat.proc3825158.chain_1651	2	STRG.20664.6	1
scaffold_13	retained_intron	3735623	3735769	+	asmbl_10730	none	Trinity_GG_25941_c0_g1_i8,blat.proc3825172.chain_445	2	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_446,blat.proc3825172.chain_448	10
scaffold_24	spliced_intron	10480275	10480378	+	asmbl_32565	none	STRG.27018.2	1	blat.proc3825178.chain_206	1
scaffold_16	alt_acceptor	7115564	7115565	-	asmbl_17163,asmbl_17164	none	STRG.19389.2,STRG.19389.3	2	Trinity_GG_10884_c0_g1_i1,blat.proc3825158.chain_524	2
scaffold_1	spliced_intron	7370029	7370112	-	asmbl_433,asmbl_434,asmbl_435	none	STRG.528.2,STRG.528.4,STRG.528.5	3	STRG.528.1,STRG.528.3,Trinity_GG_284_c0_g1_i1,blat.proc3825148.chain_515	4
scaffold_14	alt_acceptor	6683547	6683548	-	asmbl_13151	none	STRG.17110.2	1	STRG.17110.1,blat.proc3825156.chain_1917,blat.proc3825156.chain_1918	3
scaffold_16	spliced_intron	151929	152211	-	asmbl_16833,asmbl_16834,asmbl_16841	none	STRG.19010.1,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i7,Trinity_GG_10685_c0_g1_i8,blat.proc3825158.chain_147	5	Trinity_GG_10685_c0_g1_i3,blat.proc3825158.chain_148	2
scaffold_2	alt_acceptor	10645199	10645200	-	asmbl_23432	none	STRG.2226.2	1	STRG.2226.1	1
scaffold_11	retained_intron	4759244	4759351	-	asmbl_6633	none	blat.proc3825154.chain_2096	1	STRG.13575.1,blat.proc3825154.chain_2095,blat.proc3825154.chain_2097	3
scaffold_9	retained_exon	5173347	5174133	+	asmbl_54000	none	STRG.11106.1	1	STRG.11106.3	1
scaffold_21	alt_donor	4969699	4969700	+	asmbl_28546	none	STRG.24041.1,blat.proc3825176.chain_1258	2	STRG.24041.2	1
scaffold_7	retained_intron	12412941	12413129	+	asmbl_50259	none	Trinity_GG_22499_c0_g1_i1,blat.proc3825168.chain_1869	2	STRG.9345.1,Trinity_GG_22499_c0_g1_i2,blat.proc3825168.chain_1868	3
scaffold_15	skipped_exon	6884687	6887444	-	asmbl_14260,asmbl_14263,asmbl_14265,asmbl_14269	none	STRG.18301.2,STRG.18301.3,STRG.18301.4,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3156	6	STRG.18301.1,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3159	5
scaffold_5	starts_in_intron	7744870	7744870	-	asmbl_44191	none	blat.proc3825150.chain_2360	1	STRG.6152.1,blat.proc3825150.chain_2361	2
scaffold_15	alt_donor	2564142	2564143	+	asmbl_15063	none	STRG.18045.1,Trinity_GG_27217_c0_g1_i6	2	STRG.18045.3,Trinity_GG_27217_c0_g1_i9	2
scaffold_3	starts_in_intron	14847094	14847094	+	asmbl_40557	none	Trinity_GG_19457_c1_g1_i5,blat.proc3825166.chain_319	2	STRG.3832.1,STRG.3832.2,blat.proc3825166.chain_320	3
scaffold_5	starts_in_intron	1178680	1178680	-	asmbl_43831	none	blat.proc3825150.chain_1939	1	STRG.5668.1,STRG.5668.2,blat.proc3825150.chain_1938	3
scaffold_1	alt_acceptor	12170028	12170029	+	asmbl_2186,asmbl_2187	none	STRG.838.2,blat.proc3825164.chain_1008	2	blat.proc3825164.chain_1006	1
scaffold_8	ends_in_intron	18412998	18412998	-	asmbl_52534	none	STRG.10738.2,Trinity_GG_5971_c0_g1_i2,blat.proc3825152.chain_3007	3	STRG.10738.1,blat.proc3825152.chain_3006	2
scaffold_25	alternate_exon	9431572	9431821	+	asmbl_33816	none	STRG.27757.3	1	STRG.27757.1,STRG.27757.2,Trinity_GG_32597_c0_g1_i2,blat.proc3825178.chain_798	4
scaffold_1	ends_in_intron	14199468	14199468	+	asmbl_2349	none	blat.proc3825164.chain_1194	1	STRG.1008.1,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i4,Trinity_GG_17929_c0_g1_i5,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1189,blat.proc3825164.chain_1191,blat.proc3825164.chain_1192	9
scaffold_5	alt_donor	3774989	3774990	+	asmbl_45239	none	STRG.5842.3	1	STRG.5842.1,STRG.5842.2,blat.proc3825166.chain_2078,blat.proc3825166.chain_2079	4
scaffold_10	alternate_exon	17057359	17057538	-	asmbl_5027	none	STRG.13149.2	1	STRG.13149.4,blat.proc3825154.chain_1744	2
scaffold_1	skipped_exon	18521817	18524432	-	asmbl_1120	none	STRG.1303.1,blat.proc3825148.chain_1254	2	STRG.1303.2,blat.proc3825148.chain_1255	2
scaffold_6	alt_donor	15944871	15944872	+	asmbl_47683	none	blat.proc3825152.chain_740	1	STRG.8324.2,STRG.8324.3	2
scaffold_2	skipped_exon	4624737	4626065	+	asmbl_24374	none	STRG.1884.1	1	blat.proc3825164.chain_2018	1
scaffold_2	alt_donor	17951804	17951805	-	asmbl_23763	none	STRG.2687.1,blat.proc3825148.chain_2624	2	STRG.2687.2	1
scaffold_9	alt_acceptor	13891258	13891259	-	asmbl_55453	none	STRG.11653.3	1	STRG.11653.1,STRG.11653.2,blat.proc3825154.chain_113	3
scaffold_5	alt_donor	4855594	4855595	-	asmbl_44018	none	blat.proc3825150.chain_2147	1	STRG.5945.1,STRG.5945.2,blat.proc3825150.chain_2144,blat.proc3825150.chain_2146	4
scaffold_21	starts_in_intron	835370	835370	+	asmbl_28315	none	STRG.23777.4	1	STRG.23777.1,STRG.23777.3,blat.proc3825176.chain_909,blat.proc3825176.chain_910,blat.proc3825176.chain_911,blat.proc3825176.chain_912	6
scaffold_20	starts_in_intron	9652789	9652789	+	asmbl_26878	none	blat.proc3825176.chain_586	1	STRG.23506.1,blat.proc3825176.chain_585	2
scaffold_7	ends_in_intron	5233987	5233987	+	asmbl_49800	none	blat.proc3825168.chain_1362	1	STRG.8866.1,blat.proc3825168.chain_1364,blat.proc3825168.chain_1366	3
scaffold_7	spliced_intron	6654846	6655304	-	asmbl_50930,asmbl_50931	none	STRG.8943.1,blat.proc3825152.chain_1403,blat.proc3825152.chain_1407	3	STRG.8943.2,Trinity_GG_5086_c0_g1_i5,blat.proc3825152.chain_1404,blat.proc3825152.chain_1406	4
scaffold_24	retained_exon	6847764	6847781	-	asmbl_32990	none	STRG.26737.2,blat.proc3825162.chain_106	2	STRG.26737.1,blat.proc3825162.chain_105	2
scaffold_10	spliced_intron	5390545	5390782	+	asmbl_3166	none	STRG.12365.2,blat.proc3825170.chain_1032	2	Trinity_GG_24154_c0_g1_i2,blat.proc3825170.chain_1034	2
scaffold_13	spliced_intron	6619004	6619115	-	asmbl_9808	none	STRG.15958.2,Trinity_GG_8985_c0_g1_i3,blat.proc3825156.chain_864	3	Trinity_GG_8985_c0_g1_i2,blat.proc3825156.chain_865	2
scaffold_1	retained_intron	5207312	5207851	+	asmbl_1713,asmbl_1714,asmbl_1717	none	blat.proc3825164.chain_464,blat.proc3825164.chain_465,blat.proc3825164.chain_471	3	blat.proc3825164.chain_468	1
scaffold_14	alt_acceptor	8251791	8251792	-	asmbl_13269	none	STRG.17245.2,Trinity_GG_9632_c0_g1_i1,blat.proc3825156.chain_1993	3	STRG.17245.1	1
scaffold_10	ends_in_intron	12897431	12897431	-	asmbl_4842	none	blat.proc3825154.chain_1474	1	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1475,blat.proc3825154.chain_1476	4
scaffold_16	alt_acceptor	290374	290375	+	asmbl_16017,asmbl_16018,asmbl_16019	none	STRG.19019.1,blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	3	STRG.19019.2	1
scaffold_14	alt_acceptor	8093515	8093516	-	asmbl_13244	none	STRG.17229.4,Trinity_GG_9662_c0_g1_i1,blat.proc3825156.chain_2043	3	STRG.17229.2,STRG.17229.3,Trinity_GG_9662_c0_g1_i4,Trinity_GG_9662_c0_g1_i5,blat.proc3825156.chain_2042,blat.proc3825156.chain_2044	6
scaffold_22	spliced_intron	214832	216306	+	asmbl_29818	none	STRG.24676.5	1	Trinity_GG_30960_c0_g1_i4,blat.proc3825176.chain_1806	2
scaffold_9	retained_intron	6903754	6903877	-	asmbl_55088,asmbl_55091,asmbl_55092	none	STRG.11203.2,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3392	4	STRG.11203.1,blat.proc3825152.chain_3389,blat.proc3825152.chain_3393	3
scaffold_15	skipped_exon	10878095	10880861	-	asmbl_14462	none	STRG.18571.3	1	STRG.18571.1,blat.proc3825156.chain_3423	2
scaffold_7	alternate_exon	2475259	2475382	+	asmbl_49645	none	STRG.8684.2,blat.proc3825168.chain_1198	2	STRG.8684.1	1
scaffold_15	skipped_exon	8984400	8986848	+	asmbl_15373	none	STRG.18445.2,blat.proc3825172.chain_3139	2	STRG.18445.1,blat.proc3825172.chain_3138	2
scaffold_28	alt_acceptor	2405995	2405996	+	asmbl_37366	none	STRG.29414.4,blat.proc3825178.chain_2582	2	STRG.29414.1,STRG.29414.2,STRG.29414.3,blat.proc3825178.chain_2579,blat.proc3825178.chain_2580,blat.proc3825178.chain_2581	6
scaffold_15	spliced_intron	11728507	11728700	-	asmbl_14529	none	STRG.18629.1	1	STRG.18629.2	1
scaffold_23	retained_intron	7938919	7939182	-	asmbl_31064	none	STRG.26099.1,Trinity_GG_14574_c0_g2_i1,blat.proc3825160.chain_3214	3	STRG.26099.3,blat.proc3825160.chain_3215	2
scaffold_6	alt_acceptor	11484869	11484870	+	asmbl_47326,asmbl_47327,asmbl_47330,asmbl_47331,asmbl_47333	none	STRG.7943.1,STRG.7943.2,STRG.7943.4,blat.proc3825168.chain_309,blat.proc3825168.chain_310,blat.proc3825168.chain_312,blat.proc3825168.chain_314	7	STRG.7943.3,blat.proc3825168.chain_313	2
scaffold_16	starts_in_intron	10105472	10105472	+	asmbl_16521	none	blat.proc3825174.chain_479	1	STRG.19593.1,STRG.19593.2,blat.proc3825174.chain_480,blat.proc3825174.chain_481	4
scaffold_21	alternate_exon	7812103	7812671	-	asmbl_27852	none	STRG.24317.1,Trinity_GG_13547_c1_g1_i1,blat.proc3825160.chain_1429	3	STRG.24317.3	1
scaffold_5	spliced_intron	10170936	10171022	+	asmbl_45663	none	STRG.6320.1,blat.proc3825166.chain_2512	2	blat.proc3825166.chain_2513	1
scaffold_25	skipped_exon	8697800	8700443	-	asmbl_34465	none	STRG.27695.5	1	STRG.27695.2,blat.proc3825162.chain_1020	2
scaffold_5	starts_in_intron	15520660	15520660	-	asmbl_44685	none	Trinity_GG_3792_c0_g1_i3,blat.proc3825150.chain_2944	2	STRG.6745.1,STRG.6745.2,blat.proc3825150.chain_2943,blat.proc3825150.chain_2945,blat.proc3825150.chain_2946	5
scaffold_6	ends_in_intron	853118	853118	-	asmbl_48075,asmbl_48076,asmbl_48077	none	STRG.7151.3,STRG.7151.4,blat.proc3825150.chain_3267,blat.proc3825150.chain_3268	4	STRG.7151.1	1
scaffold_7	alt_acceptor	712237	712238	-	asmbl_50695	none	blat.proc3825152.chain_1092	1	STRG.8610.1,blat.proc3825152.chain_1090,blat.proc3825152.chain_1093	3
scaffold_11	alt_acceptor	6019008	6019009	+	asmbl_5599	none	STRG.13667.3,blat.proc3825170.chain_2206	2	STRG.13667.1,STRG.13667.2,blat.proc3825170.chain_2208	3
scaffold_16	retained_exon	1777656	1777691	+	asmbl_16086,asmbl_16087,asmbl_16093	none	STRG.19102.1,STRG.19102.2,Trinity_GG_27779_c0_g1_i2,Trinity_GG_27779_c0_g1_i3,blat.proc3825174.chain_2,blat.proc3825174.chain_3	6	STRG.19102.3,Trinity_GG_27779_c0_g1_i1,blat.proc3825174.chain_4	3
scaffold_13	alt_acceptor	16138096	16138097	+	asmbl_11555	none	STRG.16653.1	1	STRG.16653.2	1
scaffold_28	starts_in_intron	4207689	4207689	+	asmbl_37521	none	STRG.29616.6	1	STRG.29616.1,STRG.29616.4,STRG.29616.5,blat.proc3825178.chain_2815	4
scaffold_23	retained_intron	6289122	6289248	-	asmbl_30970,asmbl_30973,asmbl_30974	none	STRG.25975.3,Trinity_GG_14564_c0_g1_i2,blat.proc3825160.chain_3190,blat.proc3825160.chain_3192	4	STRG.25975.1,STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i6,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3188,blat.proc3825160.chain_3189,blat.proc3825160.chain_3191,blat.proc3825160.chain_3193	12
scaffold_18	skipped_exon	5779433	5781380	+	asmbl_20605	none	blat.proc3825174.chain_2311	1	STRG.21328.1,STRG.21328.2,blat.proc3825174.chain_2310,blat.proc3825174.chain_2314	4
scaffold_9	alt_donor	376900	376901	+	asmbl_53759	none	Trinity_GG_23285_c0_g1_i1	1	STRG.10774.1	1
scaffold_23	spliced_intron	7982612	7982719	+	asmbl_31745	none	STRG.26109.2,blat.proc3825176.chain_3063	2	blat.proc3825176.chain_3062	1
scaffold_13	ends_in_intron	7249329	7249329	+	asmbl_11030	none	Trinity_GG_26107_c0_g1_i2	1	STRG.16017.1,Trinity_GG_26107_c0_g1_i1,blat.proc3825172.chain_766	3
scaffold_13	spliced_intron	4254874	4255488	+	asmbl_10769	none	STRG.15745.1,blat.proc3825172.chain_484	2	STRG.15745.2,Trinity_GG_25966_c0_g1_i1,blat.proc3825172.chain_485	3
scaffold_14	alt_donor	6277343	6277344	-	asmbl_13112,asmbl_13114	none	STRG.17077.1,STRG.17077.4,blat.proc3825156.chain_1800,blat.proc3825156.chain_1801	4	STRG.17077.2,STRG.17077.3,blat.proc3825156.chain_1798,blat.proc3825156.chain_1799	4
scaffold_12	starts_in_intron	4418976	4418976	+	asmbl_7613	none	blat.proc3825170.chain_3193	1	STRG.14622.1,Trinity_GG_25400_c0_g1_i2,blat.proc3825170.chain_3195	3
scaffold_395	skipped_exon	1391	3387	-	asmbl_41075	none	STRG.30306.1,blat.proc3825162.chain_3431	2	STRG.30306.2,Trinity_GG_17004_c0_g1_i1	2
scaffold_19	spliced_intron	3684557	3684940	+	asmbl_21333,asmbl_21337	none	STRG.22058.1,blat.proc3825174.chain_3085	2	blat.proc3825174.chain_3084	1
scaffold_2	retained_intron	3764034	3764093	-	asmbl_22995	none	STRG.1808.1	1	blat.proc3825148.chain_1734	1
scaffold_18	spliced_intron	2394186	2394398	-	asmbl_19724	none	Trinity_GG_11836_c0_g1_i4,blat.proc3825158.chain_2096	2	STRG.21118.2,Trinity_GG_11836_c0_g1_i1,blat.proc3825158.chain_2094,blat.proc3825158.chain_2095	4
scaffold_23	retained_exon	4226413	4226552	-	asmbl_30847,asmbl_30848,asmbl_30849,asmbl_30852,asmbl_30853	none	STRG.25839.1,STRG.25839.2,STRG.25839.3,blat.proc3825160.chain_2986,blat.proc3825160.chain_2987,blat.proc3825160.chain_2988,blat.proc3825160.chain_2989	7	STRG.25839.5	1
scaffold_12	ends_in_intron	135141	135141	+	asmbl_7437	none	STRG.14431.1	1	STRG.14431.2,STRG.14431.3,blat.proc3825170.chain_2984,blat.proc3825170.chain_2985	4
scaffold_6	ends_in_intron	13183410	13183410	-	asmbl_48898,asmbl_48899	none	blat.proc3825152.chain_434,blat.proc3825152.chain_435	2	STRG.8077.1,blat.proc3825152.chain_433	2
scaffold_23	alt_donor	7982612	7982613	+	asmbl_31745	none	STRG.26109.2,blat.proc3825176.chain_3063	2	STRG.26109.1	1
scaffold_13	spliced_intron	7717718	7717809	-	asmbl_9903,asmbl_9904,asmbl_9905	none	STRG.16058.1,STRG.16058.2,blat.proc3825156.chain_888,blat.proc3825156.chain_889,blat.proc3825156.chain_890	5	blat.proc3825156.chain_891	1
scaffold_6	spliced_intron	10718997	10719099	+	asmbl_47291	none	STRG.7892.2,blat.proc3825168.chain_333	2	STRG.7892.1,STRG.7892.3,blat.proc3825168.chain_334,blat.proc3825168.chain_335	4
scaffold_16	alt_donor	4692208	4692209	-	asmbl_17068	none	STRG.19252.1,blat.proc3825158.chain_427	2	STRG.19252.2	1
scaffold_1	starts_in_intron	1977644	1977644	-	asmbl_98	none	blat.proc3825148.chain_131	1	blat.proc3825148.chain_133,blat.proc3825148.chain_135	2
scaffold_8	ends_in_intron	11161061	11161061	-	asmbl_52136	none	blat.proc3825152.chain_2569	1	STRG.10327.1,STRG.10327.2,blat.proc3825152.chain_2567,blat.proc3825152.chain_2568	4
scaffold_20	starts_in_intron	11480895	11480895	+	asmbl_27055	none	Trinity_GG_30405_c0_g2_i1,blat.proc3825176.chain_848	2	STRG.23653.1,STRG.23653.2,Trinity_GG_30405_c0_g1_i2,blat.proc3825176.chain_846	4
scaffold_8	ends_in_intron	12194461	12194461	-	asmbl_52187	none	Trinity_GG_5777_c2_g1_i1,blat.proc3825152.chain_2628	2	STRG.10405.1,blat.proc3825152.chain_2625,blat.proc3825152.chain_2626	3
scaffold_13	retained_intron	222006	222122	+	asmbl_10463	none	blat.proc3825172.chain_173	1	STRG.15430.1,blat.proc3825172.chain_174,blat.proc3825172.chain_175	3
scaffold_19	alt_acceptor	2780747	2780748	+	asmbl_21276,asmbl_21277,asmbl_21280	none	STRG.21962.1,STRG.21962.3,blat.proc3825174.chain_2998	3	STRG.21962.2,STRG.21962.4,STRG.21962.5	3
scaffold_21	retained_intron	6191859	6192384	+	asmbl_28620	none	STRG.24151.1,Trinity_GG_30691_c0_g1_i3,blat.proc3825176.chain_1350	3	STRG.24151.2,blat.proc3825176.chain_1349,blat.proc3825176.chain_1351	3
scaffold_28	spliced_intron	106950	107373	-	asmbl_37891,asmbl_37892	none	STRG.29246.1,blat.proc3825162.chain_2421,blat.proc3825162.chain_2426	3	blat.proc3825162.chain_2423,blat.proc3825162.chain_2424	2
scaffold_16	skipped_exon	9032625	9033770	+	asmbl_16455	none	STRG.19515.1,blat.proc3825174.chain_442	2	STRG.19515.4,blat.proc3825174.chain_443	2
scaffold_22	alternate_exon	4878592	4878677	-	asmbl_29280	none	STRG.24908.1,blat.proc3825160.chain_2013	2	STRG.24908.2,STRG.24908.3,blat.proc3825160.chain_2012,blat.proc3825160.chain_2014	4
scaffold_11	alt_acceptor	11936490	11936491	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.2,STRG.14177.3	2
scaffold_2	alt_donor	6517409	6517410	+	asmbl_24474	none	STRG.2022.3	1	STRG.2022.1,STRG.2022.2,STRG.2022.4,Trinity_GG_18449_c0_g1_i2	4
scaffold_11	retained_intron	17084606	17085018	-	asmbl_7246	none	Trinity_GG_8018_c0_g1_i2,blat.proc3825154.chain_2884	2	STRG.14373.1,STRG.14373.2,STRG.14373.3,STRG.14373.4,blat.proc3825154.chain_2882,blat.proc3825154.chain_2883,blat.proc3825154.chain_2885,blat.proc3825154.chain_2886	8
scaffold_19	spliced_intron	8805742	8805841	+	asmbl_21555	none	STRG.22329.1,blat.proc3825174.chain_3335	2	STRG.22329.3	1
scaffold_3	spliced_intron	7917853	7917894	-	asmbl_38998	none	STRG.3377.1	1	blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	2
scaffold_10	retained_exon	6705881	6705950	-	asmbl_4495	none	blat.proc3825154.chain_1094	1	STRG.12500.2,blat.proc3825154.chain_1095	2
scaffold_14	starts_in_intron	12827132	12827132	-	asmbl_13614	none	STRG.17598.2,blat.proc3825156.chain_2459	2	STRG.17598.1,Trinity_GG_9905_c0_g1_i1,blat.proc3825156.chain_2458,blat.proc3825156.chain_2461,blat.proc3825156.chain_2462	5
scaffold_1	alternate_exon	18339047	18339227	+	asmbl_2553	none	STRG.1292.1,blat.proc3825164.chain_1359	2	STRG.1292.3,STRG.1292.4,blat.proc3825164.chain_1358	3
scaffold_8	starts_in_intron	14430924	14430924	+	asmbl_53371	none	Trinity_GG_23184_c1_g1_i1,blat.proc3825168.chain_3102	2	STRG.10530.2	1
scaffold_6	alt_donor	12553415	12553416	-	asmbl_48827,asmbl_48829	none	STRG.8017.3,blat.proc3825152.chain_423	2	STRG.8017.2,blat.proc3825152.chain_421	2
scaffold_10	retained_intron	2669269	2669443	+	asmbl_2987	none	blat.proc3825170.chain_844	1	STRG.12087.1,STRG.12087.2,blat.proc3825170.chain_843	3
scaffold_15	alt_acceptor	2196860	2196861	+	asmbl_15051	none	STRG.18006.2	1	STRG.18006.1	1
scaffold_10	alternate_exon	2041914	2042024	-	asmbl_4098	none	STRG.12058.1,blat.proc3825154.chain_621	2	STRG.12058.2	1
scaffold_21	alt_donor	994280	994281	-	asmbl_27369	none	STRG.23784.2	1	STRG.23784.1,Trinity_GG_13254_c0_g1_i2,Trinity_GG_13254_c0_g1_i3,blat.proc3825160.chain_913,blat.proc3825160.chain_914	5
scaffold_2	ends_in_intron	3901272	3901272	+	asmbl_24323	none	Trinity_GG_18352_c0_g2_i1	1	STRG.1826.1,STRG.1826.2,STRG.1826.3,STRG.1826.4,blat.proc3825164.chain_1999,blat.proc3825164.chain_2000,blat.proc3825164.chain_2002,blat.proc3825164.chain_2003,blat.proc3825164.chain_2004	9
scaffold_14	alt_acceptor	583651	583652	+	asmbl_11771	none	STRG.16740.2	1	STRG.16740.3,Trinity_GG_26527_c0_g1_i1,blat.proc3825172.chain_1519	3
scaffold_9	alt_donor	14819591	14819592	-	asmbl_55498,asmbl_55502	none	STRG.11702.1,blat.proc3825154.chain_160,blat.proc3825154.chain_161	3	STRG.11702.3,STRG.11702.7,Trinity_GG_6457_c0_g1_i2,blat.proc3825154.chain_158	4
scaffold_21	alt_donor	5965973	5965974	+	asmbl_28595	none	STRG.24128.1,blat.proc3825176.chain_1265	2	STRG.24128.2,blat.proc3825176.chain_1266	2
scaffold_6	retained_intron	4535550	4536424	-	asmbl_48334,asmbl_48335	none	STRG.7434.3,STRG.7434.4,Trinity_GG_4189_c0_g1_i1,blat.proc3825150.chain_3582	4	STRG.7434.5	1
scaffold_9	spliced_intron	537756	537789	-	asmbl_54801	none	STRG.10782.2	1	STRG.10782.1,Trinity_GG_6002_c0_g1_i1,blat.proc3825152.chain_3071	3
scaffold_22	ends_in_intron	4997859	4997859	+	asmbl_30053	none	STRG.24915.2,blat.proc3825176.chain_2023	2	STRG.24915.1,blat.proc3825176.chain_2022	2
scaffold_26	alt_acceptor	1942363	1942364	-	asmbl_35425	none	STRG.27933.1	1	STRG.27933.2	1
scaffold_20	starts_in_intron	8583982	8583982	-	asmbl_26000	none	blat.proc3825160.chain_399	1	STRG.23410.1,blat.proc3825160.chain_400,blat.proc3825160.chain_401	3
scaffold_24	ends_in_intron	3760015	3760015	-	asmbl_32846	none	Trinity_GG_14857_c0_g1_i5,blat.proc3825160.chain_3686	2	STRG.26576.1,blat.proc3825160.chain_3684,blat.proc3825160.chain_3687	3
scaffold_17	retained_intron	10050378	10050855	+	asmbl_19162,asmbl_19164,asmbl_19165	none	STRG.20618.1,Trinity_GG_28608_c0_g1_i4,blat.proc3825174.chain_1499,blat.proc3825174.chain_1500	4	STRG.20618.2,STRG.20618.3,blat.proc3825174.chain_1497	3
scaffold_16	alternate_exon	14521834	14522291	-	asmbl_17453	none	STRG.19832.1,blat.proc3825158.chain_867	2	STRG.19832.2,blat.proc3825158.chain_868	2
scaffold_4	starts_in_intron	14318363	14318363	-	asmbl_43046	none	blat.proc3825150.chain_1205	1	STRG.5048.1,STRG.5048.2,STRG.5048.3,blat.proc3825150.chain_1203,blat.proc3825150.chain_1204,blat.proc3825150.chain_1206	6
scaffold_24	starts_in_intron	1227230	1227230	-	asmbl_32720	none	Trinity_GG_14736_c1_g1_i1,blat.proc3825160.chain_3486	2	STRG.26393.2,blat.proc3825160.chain_3487	2
scaffold_19	starts_in_intron	12134909	12134909	+	asmbl_21757,asmbl_21758	none	STRG.22544.3,Trinity_GG_29790_c1_g1_i1,blat.proc3825174.chain_3581	3	STRG.22544.1,STRG.22544.2,Trinity_GG_29790_c1_g1_i2,Trinity_GG_29790_c1_g1_i5,blat.proc3825174.chain_3580,blat.proc3825174.chain_3582	6
scaffold_10	alternate_exon	9062854	9063085	-	asmbl_4662	none	STRG.12655.1,blat.proc3825154.chain_1202	2	STRG.12655.3,blat.proc3825154.chain_1199,blat.proc3825154.chain_1203	3
scaffold_12	alt_donor	13391493	13391494	-	asmbl_8940,asmbl_8941,asmbl_8942,asmbl_8943,asmbl_8945,asmbl_8949	none	STRG.15219.1,STRG.15219.3,STRG.15219.4,STRG.15219.5,blat.proc3825156.chain_4,blat.proc3825156.chain_5,blat.proc3825156.chain_6,blat.proc3825156.chain_7,blat.proc3825156.chain_8	9	STRG.15219.2	1
scaffold_19	retained_intron	8753871	8754300	+	asmbl_21549	none	blat.proc3825174.chain_3314	1	STRG.22336.1,blat.proc3825174.chain_3312,blat.proc3825174.chain_3313	3
scaffold_4	alternate_exon	19587131	19588397	-	asmbl_43453,asmbl_43454,asmbl_43456,asmbl_43457,asmbl_43458	none	STRG.5543.1,STRG.5543.2,STRG.5543.3,STRG.5543.4,blat.proc3825150.chain_1740,blat.proc3825150.chain_1742,blat.proc3825150.chain_1743	7	blat.proc3825150.chain_1741	1
scaffold_19	spliced_intron	7366595	7366687	-	asmbl_22241	none	STRG.22215.1,blat.proc3825158.chain_3053	2	Trinity_GG_12398_c0_g1_i1,blat.proc3825158.chain_3051	2
scaffold_2	skipped_exon	16357457	16357877	+	asmbl_25122	none	blat.proc3825164.chain_2858	1	STRG.2575.1,blat.proc3825164.chain_2859	2
scaffold_26	spliced_intron	5756917	5757157	+	asmbl_35037,asmbl_35039	none	STRG.28274.1,blat.proc3825178.chain_1326	2	blat.proc3825178.chain_1328	1
scaffold_20	starts_in_intron	11605465	11605465	-	asmbl_26165	none	blat.proc3825160.chain_707	1	STRG.23678.1,STRG.23678.2	2
scaffold_20	alt_acceptor	1126356	1126357	-	asmbl_25543	none	blat.proc3825158.chain_3682	1	STRG.22825.1	1
scaffold_1	alt_donor	5207359	5207360	+	asmbl_1704,asmbl_1705,asmbl_1707,asmbl_1709,asmbl_1710,asmbl_1711,asmbl_1716,asmbl_1718	none	STRG.329.1,STRG.329.2,STRG.329.3,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_470,blat.proc3825164.chain_472,blat.proc3825164.chain_474,blat.proc3825164.chain_476	9	blat.proc3825164.chain_468	1
scaffold_7	alt_donor	16117920	16117921	-	asmbl_51397	none	STRG.9573.2,blat.proc3825152.chain_1931	2	STRG.9573.1	1
scaffold_10	alternate_exon	7259088	7259238	-	asmbl_4537	none	STRG.12533.2	1	STRG.12533.1,blat.proc3825154.chain_1123	2
scaffold_2	retained_intron	15274632	15274740	+	asmbl_25009	none	Trinity_GG_18659_c1_g1_i2,blat.proc3825164.chain_2613	2	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	6
scaffold_4	retained_intron	16932301	16932423	-	asmbl_43237	none	STRG.5282.2	1	STRG.5282.1	1
scaffold_8	alternate_exon	4851118	4851149	-	asmbl_51811	none	STRG.9950.2	1	STRG.9950.1,blat.proc3825152.chain_2223,blat.proc3825152.chain_2224,blat.proc3825152.chain_2225	4
scaffold_8	alt_acceptor	1127364	1127365	+	asmbl_52683	none	STRG.9752.1	1	STRG.9752.3	1
scaffold_5	alt_donor	18561018	18561019	+	asmbl_46267,asmbl_46268,asmbl_46269,asmbl_46271,asmbl_46272,asmbl_46273	none	STRG.6987.1,STRG.6987.3,STRG.6987.4,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i4,Trinity_GG_21132_c0_g1_i7,Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3153,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	13	STRG.6987.2,Trinity_GG_21132_c0_g1_i3,blat.proc3825166.chain_3149	3
scaffold_7	starts_in_intron	4931375	4931375	+	asmbl_49766,asmbl_49767,asmbl_49779	none	STRG.8852.4,blat.proc3825168.chain_1349,blat.proc3825168.chain_1351	3	STRG.8852.1,STRG.8852.2,STRG.8852.3,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1352	9
scaffold_28	retained_intron	2721160	2721312	+	asmbl_37406,asmbl_37408,asmbl_37409,asmbl_37410	none	STRG.29459.1,STRG.29459.3,blat.proc3825178.chain_2681,blat.proc3825178.chain_2682	4	STRG.29459.2,blat.proc3825178.chain_2684	2
scaffold_28	skipped_exon	4558423	4559051	-	asmbl_38213	none	STRG.29633.2,blat.proc3825162.chain_2812	2	STRG.29633.1	1
scaffold_27	alternate_exon	4383472	4383511	+	asmbl_36280	none	STRG.28897.3	1	STRG.28897.2,blat.proc3825178.chain_2087	2
scaffold_2	retained_exon	7469728	7469821	-	asmbl_23260	none	STRG.2074.2,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057	3	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2
scaffold_8	ends_in_intron	4888626	4888626	+	asmbl_52875	none	blat.proc3825168.chain_2421	1	STRG.9956.1,blat.proc3825168.chain_2419	2
scaffold_1	alt_donor	18043852	18043853	-	asmbl_1083	none	STRG.1270.1,blat.proc3825148.chain_1265	2	STRG.1270.2,blat.proc3825148.chain_1266	2
scaffold_19	spliced_intron	8124919	8125012	-	asmbl_22276	none	STRG.22265.1,blat.proc3825158.chain_3077	2	blat.proc3825158.chain_3078	1
scaffold_1	ends_in_intron	7794001	7794001	+	asmbl_1921	none	blat.proc3825164.chain_689	1	STRG.538.1,STRG.538.2,blat.proc3825164.chain_688,blat.proc3825164.chain_690	4
scaffold_15	alternate_exon	11967644	11968616	-	asmbl_14543	none	STRG.18637.1,Trinity_GG_10481_c0_g1_i1,blat.proc3825156.chain_3523	3	STRG.18637.2	1
scaffold_11	starts_in_intron	5560328	5560328	+	asmbl_5570	none	Trinity_GG_24818_c0_g1_i1,blat.proc3825170.chain_2173	2	STRG.13628.1	1
scaffold_7	starts_in_intron	12423885	12423885	-	asmbl_51221	none	blat.proc3825152.chain_1699	1	STRG.9348.1,blat.proc3825152.chain_1698	2
scaffold_19	starts_in_intron	6676703	6676703	-	asmbl_22222	none	blat.proc3825158.chain_2915	1	STRG.22184.1,STRG.22184.2,blat.proc3825158.chain_2916	3
scaffold_9	starts_in_intron	4160026	4160026	-	asmbl_54956	none	blat.proc3825152.chain_3280	1	STRG.11019.1,STRG.11019.2,blat.proc3825152.chain_3279,blat.proc3825152.chain_3281	4
scaffold_12	retained_intron	15213364	15213677	+	asmbl_8114	none	STRG.15322.2,Trinity_GG_25697_c0_g1_i2,blat.proc3825170.chain_3728	3	STRG.15322.1,STRG.15322.3,Trinity_GG_25697_c0_g1_i3,Trinity_GG_25697_c0_g1_i4,Trinity_GG_25697_c0_g1_i5,blat.proc3825170.chain_3727,blat.proc3825170.chain_3729,blat.proc3825170.chain_3730	8
scaffold_24	starts_in_intron	10604288	10604288	+	asmbl_32579,asmbl_32580	none	STRG.27028.3,Trinity_GG_32236_c0_g1_i5,blat.proc3825178.chain_218,blat.proc3825178.chain_220	4	STRG.27028.1,STRG.27028.2,blat.proc3825178.chain_221,blat.proc3825178.chain_222	4
scaffold_3	retained_intron	14700578	14700686	-	asmbl_39411	none	STRG.3818.1,blat.proc3825150.chain_13	2	STRG.3818.3	1
scaffold_10	alternate_exon	17009604	17011582	+	asmbl_3736	none	STRG.13161.1,Trinity_GG_24546_c0_g1_i1,blat.proc3825170.chain_1722	3	STRG.13161.2,STRG.13161.3	2
scaffold_10	retained_intron	5857610	5858338	-	asmbl_4393	none	Trinity_GG_6938_c0_g1_i1,Trinity_GG_6938_c0_g2_i1,blat.proc3825154.chain_981,blat.proc3825154.chain_984	4	blat.proc3825154.chain_983	1
scaffold_6	ends_in_intron	10916837	10916837	+	asmbl_47313	none	blat.proc3825168.chain_390	1	blat.proc3825168.chain_387	1
scaffold_21	ends_in_intron	5284353	5284353	-	asmbl_27640	none	Trinity_GG_13405_c0_g3_i1,blat.proc3825160.chain_1169	2	STRG.24066.1,STRG.24066.2,STRG.24066.3,blat.proc3825160.chain_1166,blat.proc3825160.chain_1167	5
scaffold_26	ends_in_intron	425924	425924	+	asmbl_34683	none	blat.proc3825178.chain_943	1	STRG.27868.1,blat.proc3825178.chain_941,blat.proc3825178.chain_942	3
scaffold_27	spliced_intron	3000638	3000932	+	asmbl_36150,asmbl_36151,asmbl_36154,asmbl_36155,asmbl_36156,asmbl_36158,asmbl_36159	none	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	9	blat.proc3825178.chain_1901	1
scaffold_11	spliced_intron	16649266	16649558	+	asmbl_6167	none	STRG.14355.1,blat.proc3825170.chain_2887	2	STRG.14355.2,Trinity_GG_25217_c0_g1_i2,blat.proc3825170.chain_2886	3
scaffold_6	alternate_exon	15103151	15103261	-	asmbl_49053	none	STRG.8276.1,blat.proc3825152.chain_695	2	STRG.8276.2	1
scaffold_15	starts_in_intron	11797058	11797058	-	asmbl_14531	none	STRG.18627.2,blat.proc3825156.chain_3508	2	STRG.18627.1,Trinity_GG_10477_c0_g1_i1,blat.proc3825156.chain_3509	3
scaffold_6	retained_exon	11668464	11668495	+	asmbl_47357	none	STRG.7960.2	1	STRG.7960.1,Trinity_GG_21670_c0_g1_i2,blat.proc3825168.chain_405	3
scaffold_14	retained_exon	8502348	8502459	-	asmbl_13325	none	STRG.17292.2	1	STRG.17292.3	1
scaffold_10	skipped_exon	1174340	1176264	+	asmbl_2914	none	STRG.12009.1,blat.proc3825170.chain_768	2	STRG.12009.2,blat.proc3825170.chain_770	2
scaffold_8	skipped_exon	11463679	11465108	+	asmbl_53227	none	STRG.10352.1,blat.proc3825168.chain_2932	2	STRG.10352.2,STRG.10352.3,blat.proc3825168.chain_2931	3
scaffold_14	alt_acceptor	11639544	11639545	+	asmbl_12396	none	STRG.17500.2	1	STRG.17500.1	1
scaffold_17	alt_acceptor	8355514	8355515	+	asmbl_18986	none	STRG.20457.1,Trinity_GG_28517_c0_g1_i1,blat.proc3825174.chain_1300	3	STRG.20457.3,Trinity_GG_28517_c0_g1_i3,blat.proc3825174.chain_1299	3
scaffold_5	spliced_intron	8751102	8751176	+	asmbl_45570	none	STRG.6213.1,blat.proc3825166.chain_2414	2	blat.proc3825166.chain_2415	1
scaffold_23	retained_intron	6289651	6289837	-	asmbl_30967,asmbl_30970,asmbl_30971,asmbl_30973,asmbl_30974	none	STRG.25975.2,STRG.25975.3,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i6,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3188,blat.proc3825160.chain_3190,blat.proc3825160.chain_3192	9	STRG.25975.1,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,blat.proc3825160.chain_3189,blat.proc3825160.chain_3191,blat.proc3825160.chain_3193	7
scaffold_17	retained_exon	2356344	2356400	+	asmbl_18638,asmbl_18641,asmbl_18642	none	STRG.20030.4,STRG.20030.5,STRG.20030.6	3	STRG.20030.2,STRG.20030.7	2
scaffold_28	spliced_intron	8030132	8030254	+	asmbl_37716	none	STRG.29874.2	1	Trinity_GG_33831_c0_g1_i1	1
scaffold_3	starts_in_intron	17363340	17363340	-	asmbl_39558	none	STRG.3971.3	1	STRG.3971.1,STRG.3971.2,STRG.3971.4,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_178,blat.proc3825150.chain_179,blat.proc3825150.chain_180,blat.proc3825150.chain_181,blat.proc3825150.chain_182,blat.proc3825150.chain_183,blat.proc3825150.chain_184,blat.proc3825150.chain_185	14
scaffold_5	alternate_exon	13790152	13790976	-	asmbl_44556	none	STRG.6591.2,blat.proc3825150.chain_2787	2	STRG.6591.1	1
scaffold_17	alt_donor	8421819	8421820	+	asmbl_18989	none	STRG.20462.1,Trinity_GG_28520_c0_g1_i2,blat.proc3825174.chain_1305	3	STRG.20462.2,Trinity_GG_28520_c0_g1_i1,blat.proc3825174.chain_1306	3
scaffold_17	retained_intron	1289822	1289896	-	asmbl_17681,asmbl_17684	none	Trinity_GG_11179_c0_g1_i6,blat.proc3825158.chain_971,blat.proc3825158.chain_976	3	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_972,blat.proc3825158.chain_973,blat.proc3825158.chain_975	6
scaffold_3	spliced_intron	10937871	10938064	+	asmbl_40322	none	STRG.3546.2,blat.proc3825166.chain_60	2	STRG.3546.1,blat.proc3825166.chain_62	2
scaffold_11	starts_in_intron	5654760	5654760	+	asmbl_5576	none	STRG.13631.2	1	STRG.13631.1,Trinity_GG_24810_c0_g1_i1,blat.proc3825170.chain_2161	3
scaffold_17	retained_intron	10050035	10050204	+	asmbl_19160,asmbl_19162	none	STRG.20618.3,Trinity_GG_28608_c0_g1_i4,blat.proc3825174.chain_1499	3	blat.proc3825174.chain_1500	1
scaffold_9	retained_intron	12113015	12113296	+	asmbl_54410,asmbl_54412	none	STRG.11537.2,blat.proc3825170.chain_367	2	blat.proc3825170.chain_368	1
scaffold_4	spliced_intron	8426956	8427185	-	asmbl_42773	none	STRG.4673.2,blat.proc3825150.chain_830	2	STRG.4673.1,blat.proc3825150.chain_828	2
scaffold_6	alt_acceptor	8460405	8460406	+	asmbl_47128	none	STRG.7725.3	1	STRG.7725.2,blat.proc3825168.chain_153	2
scaffold_4	alt_acceptor	8806970	8806971	-	asmbl_42792	none	STRG.4693.2	1	STRG.4693.1	1
scaffold_9	retained_intron	16340481	16340560	+	asmbl_54591	none	STRG.11787.3	1	blat.proc3825154.chain_245	1
scaffold_24	spliced_intron	4328698	4328844	+	asmbl_32192,asmbl_32193	none	STRG.26597.1,STRG.26597.2	2	blat.proc3825176.chain_3476	1
scaffold_18	alternate_exon	10929704	10929818	-	asmbl_20120	none	STRG.21658.2	1	STRG.21658.1,blat.proc3825158.chain_2513	2
scaffold_1	alternate_exon	5996766	5997066	-	asmbl_309	none	STRG.404.3,blat.proc3825148.chain_400	2	STRG.404.1,blat.proc3825148.chain_397,blat.proc3825148.chain_403	3
scaffold_1	starts_in_intron	2744923	2744923	-	asmbl_123	none	blat.proc3825148.chain_188	1	STRG.176.1,STRG.176.3,blat.proc3825148.chain_183	3
scaffold_1	spliced_intron	14360102	14360228	-	asmbl_904,asmbl_905,asmbl_907,asmbl_909	none	STRG.1037.1,STRG.1037.2,STRG.1037.3,blat.proc3825148.chain_1031,blat.proc3825148.chain_1034,blat.proc3825148.chain_1035	6	Trinity_GG_546_c0_g1_i5,blat.proc3825148.chain_1032,blat.proc3825148.chain_1033	3
scaffold_26	starts_in_intron	5980626	5980626	+	asmbl_35062,asmbl_35065	none	Trinity_GG_32976_c0_g1_i4,blat.proc3825178.chain_1429,blat.proc3825178.chain_1433	3	STRG.28312.1,blat.proc3825178.chain_1430,blat.proc3825178.chain_1431	3
scaffold_18	alt_acceptor	1903420	1903421	-	asmbl_19659,asmbl_19661,asmbl_19665	none	STRG.21081.6,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014	3	STRG.21081.3,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	6
scaffold_14	spliced_intron	13897375	13897832	+	asmbl_12514	none	STRG.17673.4	1	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2
scaffold_7	retained_intron	12364305	12364430	-	asmbl_51199	none	STRG.9334.2,blat.proc3825152.chain_1707	2	STRG.9334.1,Trinity_GG_5256_c0_g1_i2,Trinity_GG_5256_c0_g1_i3,blat.proc3825152.chain_1706,blat.proc3825152.chain_1708,blat.proc3825152.chain_1709,blat.proc3825152.chain_1710	7
scaffold_26	retained_intron	9781848	9782129	+	asmbl_35269	none	Trinity_GG_33037_c0_g1_i1,blat.proc3825178.chain_1532	2	STRG.28520.1,Trinity_GG_33037_c0_g1_i2,blat.proc3825178.chain_1533	3
scaffold_5	retained_exon	11639308	11639396	+	asmbl_45752	none	STRG.6424.3,Trinity_GG_20751_c0_g1_i2,blat.proc3825166.chain_2517	3	STRG.6424.1,Trinity_GG_20751_c0_g1_i1,blat.proc3825166.chain_2518	3
scaffold_6	alternate_exon	12555119	12555189	-	asmbl_48828	none	blat.proc3825152.chain_421	1	STRG.8017.1,STRG.8017.2,blat.proc3825152.chain_423,blat.proc3825152.chain_427	4
scaffold_15	alternate_exon	15346095	15346146	+	asmbl_15751	none	STRG.18919.3,Trinity_GG_27682_c0_g1_i1	2	STRG.18919.2	1
scaffold_19	alternate_exon	7843	7997	+	asmbl_21166	none	STRG.21816.1	1	STRG.21816.3	1
scaffold_1	starts_in_intron	17918118	17918118	+	asmbl_2539	none	Trinity_GG_18053_c0_g1_i3,blat.proc3825164.chain_1402	2	STRG.1253.1,STRG.1253.2	2
scaffold_18	alternate_exon	2818703	2834055	+	asmbl_20422	none	STRG.21142.1,blat.proc3825174.chain_2052,blat.proc3825174.chain_2060	3	STRG.21142.4,STRG.21142.5,blat.proc3825174.chain_2046,blat.proc3825174.chain_2048	4
scaffold_2	spliced_intron	5183182	5183932	-	asmbl_23134	none	blat.proc3825148.chain_1970	1	STRG.1929.1,blat.proc3825148.chain_1965	2
scaffold_4	skipped_exon	5221309	5222170	-	asmbl_42569	none	STRG.4415.1,Trinity_GG_2463_c0_g1_i2,blat.proc3825150.chain_634	3	STRG.4415.2,blat.proc3825150.chain_635	2
scaffold_13	alt_acceptor	5131753	5131754	+	asmbl_10828	none	STRG.15817.2	1	STRG.15817.1,STRG.15817.3,blat.proc3825172.chain_558,blat.proc3825172.chain_559	4
scaffold_15	retained_exon	12032101	12032194	+	asmbl_15513	none	STRG.18644.2,Trinity_GG_27537_c0_g1_i2,blat.proc3825172.chain_3276	3	STRG.18644.1,Trinity_GG_27537_c0_g1_i1,Trinity_GG_27537_c0_g1_i3,blat.proc3825172.chain_3278,blat.proc3825172.chain_3279	5
scaffold_4	skipped_exon	3237335	3238369	-	asmbl_42424	none	STRG.4249.4	1	STRG.4249.2,blat.proc3825150.chain_493	2
scaffold_23	retained_intron	2164879	2165545	-	asmbl_30700,asmbl_30702	none	STRG.25690.1,blat.proc3825160.chain_2856	2	STRG.25690.2	1
scaffold_13	alt_donor	2566442	2566443	+	asmbl_10623	none	STRG.15563.2	1	STRG.15563.1	1
scaffold_8	retained_intron	12693269	12693431	+	asmbl_53332	none	blat.proc3825168.chain_3010	1	blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3011	4
scaffold_4	spliced_intron	1618801	1618830	+	asmbl_41117	none	STRG.4192.2	1	STRG.4192.1	1
scaffold_10	retained_intron	6077386	6078828	-	asmbl_4422,asmbl_4423	none	STRG.12445.2,STRG.12445.3,Trinity_GG_6960_c0_g2_i1,blat.proc3825154.chain_1033,blat.proc3825154.chain_1035	5	STRG.12445.1	1
scaffold_18	retained_intron	4768861	4769106	+	asmbl_20553	none	STRG.21273.1,Trinity_GG_29026_c0_g1_i1,blat.proc3825174.chain_2227	3	STRG.21273.4	1
scaffold_11	alt_donor	11938200	11938201	-	asmbl_7042,asmbl_7043	none	STRG.14177.2,STRG.14177.3	2	STRG.14177.4	1
scaffold_1	spliced_intron	5962878	5963181	-	asmbl_305	none	STRG.399.1,blat.proc3825148.chain_363	2	Trinity_GG_210_c0_g2_i1,blat.proc3825148.chain_364	2
scaffold_27	ends_in_intron	570828	570828	+	asmbl_35950	none	STRG.28577.1,Trinity_GG_33101_c1_g1_i1,blat.proc3825178.chain_1670	3	STRG.28577.2,blat.proc3825178.chain_1668,blat.proc3825178.chain_1669	3
scaffold_1	spliced_intron	5739339	5739419	+	asmbl_1775,asmbl_1776,asmbl_1777,asmbl_1778	none	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_530	4	blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528,blat.proc3825164.chain_529	4
scaffold_5	retained_intron	19031567	19031663	-	asmbl_44888	none	STRG.7022.6,blat.proc3825150.chain_3129	2	STRG.7022.5	1
scaffold_3	alt_acceptor	14496048	14496049	-	asmbl_39378,asmbl_39383	none	STRG.3790.1,Trinity_GG_2093_c0_g1_i2,blat.proc3825148.chain_3720	3	Trinity_GG_2093_c0_g1_i1,blat.proc3825148.chain_3719	2
scaffold_8	alternate_exon	6809445	6809842	-	asmbl_51888	none	STRG.10044.2,blat.proc3825152.chain_2307	2	blat.proc3825152.chain_2306	1
scaffold_21	alternate_exon	2947913	2948027	-	asmbl_27495	none	STRG.23917.3,blat.proc3825160.chain_988	2	STRG.23917.1,blat.proc3825160.chain_985,blat.proc3825160.chain_986	3
scaffold_2	retained_intron	11610034	11611257	+	asmbl_24758,asmbl_24759	none	STRG.2268.1,blat.proc3825164.chain_2376,blat.proc3825164.chain_2379,blat.proc3825164.chain_2381,blat.proc3825164.chain_2382	5	STRG.2268.3,blat.proc3825164.chain_2377	2
scaffold_14	alt_acceptor	3154563	3154564	+	asmbl_11910	none	STRG.16908.3	1	STRG.16908.1,STRG.16908.2,Trinity_GG_26576_c0_g1_i11,Trinity_GG_26576_c0_g1_i12,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1601,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1605,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1609,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	20
scaffold_3	alt_donor	19406812	19406813	-	asmbl_39651	none	STRG.4086.2	1	STRG.4086.1,STRG.4086.3,STRG.4086.4,STRG.4086.5,blat.proc3825150.chain_250,blat.proc3825150.chain_251,blat.proc3825150.chain_252,blat.proc3825150.chain_253	8
scaffold_7	alt_acceptor	12542740	12542741	-	asmbl_51237,asmbl_51241,asmbl_51242	none	STRG.9363.1,STRG.9363.5,blat.proc3825152.chain_1713,blat.proc3825152.chain_1717	4	STRG.9363.4	1
scaffold_20	starts_in_intron	8317165	8317165	+	asmbl_26765	none	blat.proc3825176.chain_508	1	STRG.23377.1,STRG.23377.2,blat.proc3825176.chain_506,blat.proc3825176.chain_507	4
scaffold_21	retained_intron	8004779	8005332	+	asmbl_28775	none	STRG.24337.3,blat.proc3825176.chain_1557	2	STRG.24337.2,blat.proc3825176.chain_1553	2
scaffold_4	starts_in_intron	17026991	17026991	+	asmbl_42021,asmbl_42023	none	STRG.5301.3,blat.proc3825166.chain_1648,blat.proc3825166.chain_1650	3	STRG.5301.2,Trinity_GG_20244_c1_g1_i1,blat.proc3825166.chain_1651	3
scaffold_3	skipped_exon	6174096	6176391	-	asmbl_38902,asmbl_38903,asmbl_38904	none	STRG.3284.2,STRG.3284.3,blat.proc3825148.chain_3075,blat.proc3825148.chain_3076	4	STRG.3284.1,blat.proc3825148.chain_3074	2
scaffold_7	skipped_exon	12082936	12083422	+	asmbl_50220	none	STRG.9316.3	1	STRG.9316.4	1
scaffold_4	alt_acceptor	4380558	4380559	-	asmbl_42509,asmbl_42510	none	STRG.4339.1,STRG.4339.3,blat.proc3825150.chain_577	3	STRG.4339.2	1
scaffold_25	retained_exon	5827636	5827769	-	asmbl_34287,asmbl_34288,asmbl_34290,asmbl_34296	none	STRG.27479.1,STRG.27479.2,STRG.27479.4,blat.proc3825162.chain_877	4	blat.proc3825162.chain_879,blat.proc3825162.chain_880	2
scaffold_12	retained_exon	2577724	2577884	+	asmbl_7499	none	STRG.14503.1,Trinity_GG_25328_c0_g1_i1,blat.proc3825170.chain_3053	3	STRG.14503.2,Trinity_GG_25328_c0_g1_i2,blat.proc3825170.chain_3054	3
scaffold_7	starts_in_intron	15289450	15289450	+	asmbl_50443	none	STRG.9544.2	1	STRG.9544.1	1
scaffold_9	spliced_intron	14818996	14819592	-	asmbl_55498,asmbl_55502	none	STRG.11702.1,blat.proc3825154.chain_160,blat.proc3825154.chain_161	3	STRG.11702.8,blat.proc3825154.chain_162	2
scaffold_19	ends_in_intron	10821864	10821864	+	asmbl_21662	none	blat.proc3825174.chain_3433	1	STRG.22421.1,STRG.22421.2,Trinity_GG_29712_c0_g1_i1,blat.proc3825174.chain_3431,blat.proc3825174.chain_3432,blat.proc3825174.chain_3434	6
scaffold_20	ends_in_intron	6290480	6290480	-	asmbl_25834	none	STRG.23230.2,blat.proc3825160.chain_339	2	STRG.23230.1,blat.proc3825160.chain_338	2
scaffold_13	skipped_exon	8909268	8912067	+	asmbl_11157	none	STRG.16165.1,blat.proc3825172.chain_955	2	STRG.16165.2,Trinity_GG_26201_c0_g1_i6,blat.proc3825172.chain_959	3
scaffold_20	spliced_intron	11743342	11743680	-	asmbl_26193	none	STRG.23685.1,blat.proc3825160.chain_780	2	blat.proc3825160.chain_782	1
scaffold_25	ends_in_intron	3823519	3823519	-	asmbl_34166	none	blat.proc3825162.chain_695	1	STRG.27340.2,blat.proc3825162.chain_697	2
scaffold_14	ends_in_intron	326764	326764	-	asmbl_12821	none	Trinity_GG_9360_c0_g1_i3,blat.proc3825156.chain_1548	2	STRG.16724.1,STRG.16724.2,Trinity_GG_9360_c0_g1_i2,blat.proc3825156.chain_1549	4
scaffold_5	ends_in_intron	1485596	1485596	+	asmbl_45130	none	STRG.5705.1	1	blat.proc3825166.chain_1946	1
scaffold_10	ends_in_intron	714046	714046	-	asmbl_3990,asmbl_3991,asmbl_3992	none	STRG.11957.5,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541,blat.proc3825154.chain_545	4	STRG.11957.1,STRG.11957.2,STRG.11957.3,STRG.11957.4	4
scaffold_13	spliced_intron	278905	279237	+	asmbl_10465,asmbl_10467,asmbl_10468,asmbl_10473	none	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,blat.proc3825172.chain_196,blat.proc3825172.chain_197,blat.proc3825172.chain_198	7	Trinity_GG_25812_c0_g1_i2,blat.proc3825172.chain_199	2
scaffold_23	ends_in_intron	10201354	10201354	-	asmbl_31132	none	Trinity_GG_14642_c0_g1_i1,blat.proc3825160.chain_3334,blat.proc3825160.chain_3335	3	STRG.26231.1,STRG.26231.2,STRG.26231.3,blat.proc3825160.chain_3339,blat.proc3825160.chain_3340	5
scaffold_14	alt_acceptor	7999636	7999637	+	asmbl_12179	none	STRG.17215.2,Trinity_GG_26782_c0_g1_i1,blat.proc3825172.chain_1971	3	STRG.17215.1,STRG.17215.3,blat.proc3825172.chain_1972	3
scaffold_2	starts_in_intron	7214026	7214026	+	asmbl_24541,asmbl_24542,asmbl_24543	none	STRG.2054.2,STRG.2054.3,STRG.2054.4	3	STRG.2054.1	1
scaffold_15	starts_in_intron	1689947	1689947	+	asmbl_15029	none	Trinity_GG_27194_c0_g1_i1,blat.proc3825172.chain_2689	2	STRG.17978.1,Trinity_GG_27194_c0_g1_i2,blat.proc3825172.chain_2688	3
scaffold_13	retained_intron	2274573	2277261	-	asmbl_9437,asmbl_9438,asmbl_9445,asmbl_9448,asmbl_9449	none	STRG.15548.3,STRG.15548.4,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395	5	STRG.15548.1,blat.proc3825156.chain_398	2
scaffold_13	skipped_exon	6396106	6396589	+	asmbl_10924,asmbl_10930	none	STRG.15929.3,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	4	STRG.15929.4,Trinity_GG_26055_c0_g1_i1,blat.proc3825172.chain_652	3
scaffold_13	skipped_exon	9237133	9239582	+	asmbl_11183	none	STRG.16182.2	1	STRG.16182.1,blat.proc3825172.chain_941,blat.proc3825172.chain_942	3
scaffold_12	ends_in_intron	14266862	14266862	+	asmbl_8084	none	blat.proc3825170.chain_3706	1	STRG.15263.1,blat.proc3825170.chain_3703	2
scaffold_2	retained_intron	4578060	4578717	+	asmbl_24358	none	STRG.1886.1,Trinity_GG_18341_c1_g1_i3,blat.proc3825164.chain_1978	3	STRG.1886.2,Trinity_GG_18341_c1_g1_i4,blat.proc3825164.chain_1977,blat.proc3825164.chain_1979,blat.proc3825164.chain_1980	5
scaffold_1	spliced_intron	1608748	1608955	-	asmbl_83	none	STRG.112.1,blat.proc3825148.chain_97	2	Trinity_GG_55_c0_g1_i2,blat.proc3825148.chain_96	2
scaffold_19	retained_exon	9097972	9098075	+	asmbl_21571	none	STRG.22353.2	1	STRG.22353.1,blat.proc3825174.chain_3338	2
scaffold_7	retained_intron	12614841	12615086	+	asmbl_50279	none	STRG.9372.2,Trinity_GG_22488_c0_g1_i1,blat.proc3825168.chain_1850	3	STRG.9372.1,Trinity_GG_22488_c0_g1_i2,blat.proc3825168.chain_1849	3
scaffold_19	alt_acceptor	1498490	1498491	+	asmbl_21243,asmbl_21244	none	STRG.21912.1,STRG.21912.5	2	STRG.21912.2,STRG.21912.3,STRG.21912.4,blat.proc3825174.chain_2936	4
scaffold_4	starts_in_intron	12524625	12524625	-	asmbl_42915	none	blat.proc3825150.chain_1061	1	STRG.4886.1,Trinity_GG_2717_c0_g2_i1,blat.proc3825150.chain_1062	3
scaffold_5	alt_acceptor	18369202	18369203	+	asmbl_46256	none	STRG.6969.2	1	STRG.6969.1,blat.proc3825166.chain_3174	2
scaffold_23	alt_acceptor	362282	362283	-	asmbl_30595	none	blat.proc3825160.chain_2722	1	STRG.25564.4,Trinity_GG_14303_c0_g1_i4,blat.proc3825160.chain_2721,blat.proc3825160.chain_2726	4
scaffold_25	alt_acceptor	337655	337656	+	asmbl_33325	none	STRG.27077.2	1	STRG.27077.1,STRG.27077.3	2
scaffold_10	alt_donor	7275859	7275860	+	asmbl_3269,asmbl_3270,asmbl_3271,asmbl_3273	none	STRG.12540.1,STRG.12540.2,STRG.12540.3,blat.proc3825170.chain_1145,blat.proc3825170.chain_1147,blat.proc3825170.chain_1148,blat.proc3825170.chain_1149	7	STRG.12540.4,blat.proc3825170.chain_1150	2
scaffold_26	retained_intron	5755074	5756532	+	asmbl_35037,asmbl_35038	none	blat.proc3825178.chain_1326,blat.proc3825178.chain_1327,blat.proc3825178.chain_1328	3	STRG.28274.1	1
scaffold_11	spliced_intron	8723372	8723845	+	asmbl_5832,asmbl_5833	none	STRG.13892.1,STRG.13892.2,Trinity_GG_24977_c0_g1_i2,blat.proc3825170.chain_2457	4	STRG.13892.3,STRG.13892.4,Trinity_GG_24977_c0_g1_i3,Trinity_GG_24977_c0_g1_i5,blat.proc3825170.chain_2459,blat.proc3825170.chain_2461	6
scaffold_2	alt_acceptor	15453335	15453336	+	asmbl_25039,asmbl_25040	none	blat.proc3825164.chain_2804,blat.proc3825164.chain_2808	2	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811,blat.proc3825164.chain_2812	7
scaffold_20	alt_acceptor	11382741	11382742	+	asmbl_27035,asmbl_27036,asmbl_27038	none	STRG.23648.2,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_759	5	STRG.23648.1,STRG.23648.3,STRG.23648.4,Trinity_GG_30352_c0_g1_i1,blat.proc3825176.chain_757	5
scaffold_1	ends_in_intron	11551735	11551735	-	asmbl_629	none	STRG.760.3,blat.proc3825148.chain_732	2	STRG.760.2	1
scaffold_6	retained_intron	8460732	8460860	+	asmbl_47130	none	blat.proc3825168.chain_151	1	STRG.7725.1,STRG.7725.2,STRG.7725.3,STRG.7725.4,blat.proc3825168.chain_153,blat.proc3825168.chain_154	6
scaffold_9	ends_in_intron	9657515	9657515	+	asmbl_54220,asmbl_54222,asmbl_54226	none	blat.proc3825170.chain_155,blat.proc3825170.chain_157,blat.proc3825170.chain_163	3	STRG.11344.1,STRG.11344.2,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_158,blat.proc3825170.chain_160	6
scaffold_1	starts_in_intron	12110920	12110920	+	asmbl_2178	none	blat.proc3825164.chain_950	1	STRG.826.1,blat.proc3825164.chain_952	2
scaffold_16	retained_intron	8294415	8294498	+	asmbl_16388	none	STRG.19465.1,blat.proc3825174.chain_384	2	STRG.19465.2,blat.proc3825174.chain_385	2
scaffold_15	alt_donor	371088	371089	-	asmbl_13916	none	STRG.17891.1,blat.proc3825156.chain_2709	2	STRG.17891.2,blat.proc3825156.chain_2710	2
scaffold_20	starts_in_intron	1011728	1011728	-	asmbl_25521	none	blat.proc3825158.chain_3650	1	STRG.22807.1,blat.proc3825158.chain_3649	2
scaffold_2	spliced_intron	18591305	18591383	-	asmbl_23798	none	STRG.2733.1,blat.proc3825148.chain_2621	2	STRG.2733.2,blat.proc3825148.chain_2622	2
scaffold_13	alt_donor	8749120	8749121	+	asmbl_11147	none	STRG.16149.2,blat.proc3825172.chain_949	2	STRG.16149.1,blat.proc3825172.chain_950	2
scaffold_14	retained_intron	12823398	12823517	-	asmbl_13613	none	Trinity_GG_9905_c0_g1_i8,blat.proc3825156.chain_2463	2	STRG.17598.1,STRG.17598.2,STRG.17598.3,STRG.17598.4,STRG.17598.5,blat.proc3825156.chain_2458,blat.proc3825156.chain_2460,blat.proc3825156.chain_2461,blat.proc3825156.chain_2464	9
scaffold_5	retained_exon	9649907	9649963	+	asmbl_45626	none	STRG.6281.2,blat.proc3825166.chain_2430	2	STRG.6281.1,blat.proc3825166.chain_2429	2
scaffold_4	retained_intron	4417425	4417532	+	asmbl_41250,asmbl_41257	none	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_853,blat.proc3825166.chain_854	3	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_842,blat.proc3825166.chain_847,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_851,blat.proc3825166.chain_855	14
scaffold_24	spliced_intron	10778989	10779251	-	asmbl_33218,asmbl_33219,asmbl_33220,asmbl_33222	none	STRG.27043.1,blat.proc3825162.chain_367,blat.proc3825162.chain_368,blat.proc3825162.chain_369,blat.proc3825162.chain_371	5	blat.proc3825162.chain_370	1
scaffold_3	retained_intron	6692163	6692245	+	asmbl_40127	none	STRG.3291.2	1	STRG.3291.1,Trinity_GG_19169_c0_g1_i1,blat.proc3825164.chain_3538	3
scaffold_27	alt_acceptor	5660595	5660596	+	asmbl_36351	none	STRG.28973.2,blat.proc3825178.chain_2094	2	STRG.28973.1,blat.proc3825178.chain_2093,blat.proc3825178.chain_2095	3
scaffold_4	retained_exon	16883546	16883674	-	asmbl_43232	none	STRG.5278.1,Trinity_GG_2939_c0_g1_i1,blat.proc3825150.chain_1434	3	STRG.5278.2	1
scaffold_15	alternate_exon	2782678	2782814	-	asmbl_14050	none	STRG.18069.3	1	STRG.18069.1	1
scaffold_9	retained_intron	6396892	6397036	-	asmbl_55054	none	blat.proc3825152.chain_3363	1	STRG.11174.2	1
scaffold_4	alternate_exon	14430037	14430189	+	asmbl_41870	none	STRG.5058.1	1	STRG.5058.2	1
scaffold_21	ends_in_intron	7290859	7290859	-	asmbl_27795	none	blat.proc3825160.chain_1397	1	STRG.24252.1,STRG.24252.2,STRG.24252.3,blat.proc3825160.chain_1396,blat.proc3825160.chain_1398,blat.proc3825160.chain_1399	6
scaffold_2	alt_donor	7894006	7894007	+	asmbl_24589,asmbl_24590,asmbl_24591,asmbl_24592	none	STRG.2085.1,STRG.2085.2,blat.proc3825164.chain_2202,blat.proc3825164.chain_2203,blat.proc3825164.chain_2206,blat.proc3825164.chain_2208,blat.proc3825164.chain_2210,blat.proc3825164.chain_2211	8	STRG.2085.3,blat.proc3825164.chain_2201,blat.proc3825164.chain_2205	3
scaffold_14	alt_donor	7249176	7249177	+	asmbl_12140	none	STRG.17162.1,blat.proc3825172.chain_1944	2	STRG.17162.2,blat.proc3825172.chain_1945	2
scaffold_11	retained_intron	7924464	7925337	+	asmbl_5697	none	STRG.13804.2,Trinity_GG_24903_c0_g1_i4,blat.proc3825170.chain_2322	3	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3
scaffold_12	retained_intron	13049284	13049664	-	asmbl_8910	none	STRG.15194.1,Trinity_GG_8498_c0_g1_i4,blat.proc3825154.chain_3715	3	STRG.15194.2,blat.proc3825154.chain_3717	2
scaffold_2	alt_donor	16086674	16086675	-	asmbl_23665,asmbl_23668,asmbl_23669,asmbl_23671	none	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2435,blat.proc3825148.chain_2437,blat.proc3825148.chain_2438	5	blat.proc3825148.chain_2436	1
scaffold_5	alt_donor	5738210	5738211	+	asmbl_45364,asmbl_45366	none	STRG.5992.5,blat.proc3825166.chain_2135	2	STRG.5992.4,STRG.5992.6,blat.proc3825166.chain_2131	3
scaffold_18	alternate_exon	13482883	13483020	-	asmbl_20176	none	STRG.21793.1,blat.proc3825158.chain_2606	2	STRG.21793.3,blat.proc3825158.chain_2605	2
scaffold_1	retained_intron	6283987	6285080	-	asmbl_334	none	STRG.423.6,Trinity_GG_229_c0_g1_i11,Trinity_GG_229_c0_g1_i13,blat.proc3825148.chain_408,blat.proc3825148.chain_413	5	STRG.423.2,STRG.423.3,blat.proc3825148.chain_411	3
scaffold_11	spliced_intron	14528202	14528402	+	asmbl_6087	none	STRG.14251.1,blat.proc3825170.chain_2781	2	STRG.14251.2	1
scaffold_18	alt_acceptor	7943320	7943321	-	asmbl_19987,asmbl_19988	none	STRG.21493.1,STRG.21493.2	2	STRG.21493.3	1
scaffold_1	retained_intron	11687601	11687763	+	asmbl_2132	none	STRG.780.2,blat.proc3825164.chain_922	2	STRG.780.1,blat.proc3825164.chain_923,blat.proc3825164.chain_924	3
scaffold_15	starts_in_intron	10661330	10661330	-	asmbl_14445	none	blat.proc3825156.chain_3415	1	STRG.18558.1,STRG.18558.4,blat.proc3825156.chain_3413	3
scaffold_21	alt_acceptor	2999543	2999544	+	asmbl_28432	none	STRG.23923.1	1	STRG.23923.2,blat.proc3825176.chain_1156	2
scaffold_28	spliced_intron	294106	294231	+	asmbl_37269,asmbl_37270	none	STRG.29263.2,blat.proc3825178.chain_2488	2	STRG.29263.3,blat.proc3825178.chain_2492	2
scaffold_19	spliced_intron	10121648	10121867	+	asmbl_21618	none	STRG.22395.1,blat.proc3825174.chain_3394	2	Trinity_GG_29687_c2_g1_i1,blat.proc3825174.chain_3395	2
scaffold_20	retained_intron	5910780	5911000	+	asmbl_26647	none	Trinity_GG_30120_c1_g1_i2,blat.proc3825176.chain_391,blat.proc3825176.chain_392,blat.proc3825176.chain_394	4	blat.proc3825176.chain_393	1
scaffold_2	alt_acceptor	2516647	2516648	-	asmbl_22898	none	STRG.1691.2	1	STRG.1691.1,STRG.1691.3,blat.proc3825148.chain_1653	3
scaffold_1	retained_intron	1349041	1349123	+	asmbl_1477	none	STRG.81.2	1	STRG.81.1,Trinity_GG_17367_c0_g1_i2,blat.proc3825164.chain_177	3
scaffold_9	ends_in_intron	1664608	1664608	-	asmbl_54827	none	STRG.10862.8	1	STRG.10862.5,STRG.10862.7	2
scaffold_6	spliced_intron	17672230	17672360	+	asmbl_47771,asmbl_47774,asmbl_47775,asmbl_47776,asmbl_47777	none	STRG.8462.1,STRG.8462.2,STRG.8462.3,Trinity_GG_21933_c0_g1_i5,Trinity_GG_21933_c0_g1_i7,blat.proc3825168.chain_866,blat.proc3825168.chain_868,blat.proc3825168.chain_869,blat.proc3825168.chain_871	9	Trinity_GG_21933_c0_g1_i2,Trinity_GG_21933_c0_g1_i6,blat.proc3825168.chain_865,blat.proc3825168.chain_867	4
scaffold_21	alternate_exon	8003615	8003840	+	asmbl_28778,asmbl_28780	none	STRG.24337.1,blat.proc3825176.chain_1555	2	STRG.24337.2,blat.proc3825176.chain_1553	2
scaffold_3	starts_in_intron	18336391	18336391	-	asmbl_39612	none	blat.proc3825150.chain_215	1	STRG.4037.1	1
scaffold_1	alternate_exon	5201623	5201769	+	asmbl_1705,asmbl_1706,asmbl_1707	none	STRG.329.1,blat.proc3825164.chain_467,blat.proc3825164.chain_469	3	STRG.329.2,STRG.329.3,blat.proc3825164.chain_473,blat.proc3825164.chain_476	4
scaffold_8	spliced_intron	4194620	4194679	-	asmbl_51761	none	STRG.9896.2	1	STRG.9896.1	1
scaffold_4	starts_in_intron	4414847	4414847	+	asmbl_41246	none	Trinity_GG_19749_c0_g1_i15,blat.proc3825166.chain_848	2	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i2,Trinity_GG_19749_c0_g1_i21,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_842,blat.proc3825166.chain_843,blat.proc3825166.chain_845,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_851,blat.proc3825166.chain_852,blat.proc3825166.chain_853	16
scaffold_7	starts_in_intron	9810145	9810145	-	asmbl_51074	none	blat.proc3825152.chain_1539	1	STRG.9176.2	1
scaffold_8	ends_in_intron	9906590	9906590	-	asmbl_52067	none	Trinity_GG_5719_c0_g1_i5,blat.proc3825152.chain_2524	2	STRG.10243.1,STRG.10243.2,blat.proc3825152.chain_2525,blat.proc3825152.chain_2526	4
scaffold_12	alt_donor	4214625	4214626	+	asmbl_7589,asmbl_7591	none	STRG.14601.1,blat.proc3825170.chain_3167,blat.proc3825170.chain_3169	3	STRG.14601.2,STRG.14601.3	2
scaffold_8	starts_in_intron	2662748	2662748	+	asmbl_52730	none	Trinity_GG_22761_c1_g1_i1,blat.proc3825168.chain_2341	2	STRG.9808.1,STRG.9808.2,Trinity_GG_22761_c0_g1_i1,Trinity_GG_22761_c0_g1_i2,blat.proc3825168.chain_2339,blat.proc3825168.chain_2340	6
scaffold_12	spliced_intron	16338941	16339103	+	asmbl_8162	none	STRG.15393.2,blat.proc3825172.chain_104	2	blat.proc3825172.chain_103	1
scaffold_27	alt_donor	4161185	4161186	-	asmbl_36948	none	STRG.28876.2	1	STRG.28876.1,blat.proc3825162.chain_2122	2
scaffold_24	retained_intron	7786686	7786927	-	asmbl_33063	none	blat.proc3825162.chain_213	1	blat.proc3825162.chain_212	1
scaffold_17	retained_intron	12142249	12142794	+	asmbl_19266	none	STRG.20751.1,Trinity_GG_28698_c0_g1_i1,blat.proc3825174.chain_1640	3	STRG.20751.2,blat.proc3825174.chain_1641	2
scaffold_20	alt_donor	11151331	11151332	-	asmbl_26143	none	STRG.23641.1,Trinity_GG_13166_c0_g1_i2,blat.proc3825160.chain_712	3	STRG.23641.2,Trinity_GG_13166_c0_g1_i1,blat.proc3825160.chain_711	3
scaffold_12	spliced_intron	15204227	15204314	+	asmbl_8111	none	STRG.15328.2,blat.proc3825172.chain_32	2	STRG.15328.1,blat.proc3825172.chain_33	2
scaffold_5	alt_acceptor	18174147	18174148	+	asmbl_46208,asmbl_46209	none	STRG.6956.1,blat.proc3825166.chain_3177	2	STRG.6956.2	1
scaffold_28	skipped_exon	7747035	7748172	-	asmbl_38407	none	STRG.29848.1,blat.proc3825162.chain_3009	2	STRG.29848.2	1
scaffold_17	spliced_intron	14546213	14546320	+	asmbl_19415	none	STRG.20928.3	1	STRG.20928.1,Trinity_GG_28807_c0_g1_i2,Trinity_GG_28807_c0_g1_i3	3
scaffold_70	alt_donor	8054	8055	-	asmbl_51600	none	STRG.30108.1	1	STRG.30108.2,Trinity_GG_16893_c0_g1_i1,blat.proc3825162.chain_3271,blat.proc3825162.chain_3272,blat.proc3825178.chain_3226	5
scaffold_14	alt_acceptor	7473910	7473911	-	asmbl_13209,asmbl_13212	none	STRG.17192.2,STRG.17192.3,blat.proc3825156.chain_1871	3	STRG.17192.1	1
scaffold_27	starts_in_intron	2787267	2787267	+	asmbl_36109	none	blat.proc3825178.chain_1826	1	STRG.28759.1,blat.proc3825178.chain_1827,blat.proc3825178.chain_1829,blat.proc3825178.chain_1830	4
scaffold_1	retained_intron	19042133	19042344	+	asmbl_2578	none	Trinity_GG_18101_c0_g1_i2,blat.proc3825164.chain_1480	2	STRG.1335.1,STRG.1335.5	2
scaffold_10	retained_intron	17325221	17326440	-	asmbl_5052	none	STRG.13182.3,blat.proc3825154.chain_1777	2	STRG.13182.1,blat.proc3825154.chain_1775	2
scaffold_22	starts_in_intron	4220368	4220368	-	asmbl_29224	none	Trinity_GG_13909_c1_g1_i14	1	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	10
scaffold_8	alt_acceptor	6900631	6900632	+	asmbl_52972,asmbl_52973	none	STRG.10051.2,STRG.10051.3	2	STRG.10051.1,blat.proc3825168.chain_2534,blat.proc3825168.chain_2536,blat.proc3825168.chain_2537	4
scaffold_22	alt_donor	10320314	10320315	+	asmbl_30353	none	STRG.25386.2	1	STRG.25386.1,blat.proc3825176.chain_2361,blat.proc3825176.chain_2362	3
scaffold_15	retained_intron	14663329	14663440	+	asmbl_15694	none	Trinity_GG_27665_c0_g1_i2,blat.proc3825172.chain_3505	2	STRG.18882.1	1
scaffold_1	alternate_exon	18521538	18521816	-	asmbl_1120	none	STRG.1303.1,blat.proc3825148.chain_1254	2	blat.proc3825148.chain_1256	1
scaffold_15	alternate_exon	11141906	11143789	-	asmbl_14482	none	blat.proc3825156.chain_3380	1	blat.proc3825156.chain_3385	1
scaffold_6	spliced_intron	12479552	12479961	+	asmbl_47400,asmbl_47403	none	STRG.8006.4,blat.proc3825168.chain_472	2	STRG.8006.1,blat.proc3825168.chain_473,blat.proc3825168.chain_477	3
scaffold_28	spliced_intron	1104760	1104779	-	asmbl_37965	none	STRG.29317.1,blat.proc3825162.chain_2486	2	Trinity_GG_16420_c0_g1_i1	1
scaffold_13	retained_exon	5736655	5736750	-	asmbl_9719	none	blat.proc3825156.chain_762	1	STRG.15882.1,blat.proc3825156.chain_763	2
scaffold_10	spliced_intron	11970420	11970501	+	asmbl_3508,asmbl_3509	none	STRG.12838.1,STRG.12838.2	2	STRG.12838.3,STRG.12838.6	2
scaffold_1	retained_intron	20338943	20339721	+	asmbl_2615,asmbl_2616,asmbl_2617,asmbl_2619	none	STRG.1396.1,STRG.1396.3,STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	9	blat.proc3825164.chain_1591	1
scaffold_15	alt_donor	2990834	2990835	-	asmbl_14069	none	STRG.18083.1,blat.proc3825156.chain_2909	2	STRG.18083.3,blat.proc3825156.chain_2908	2
scaffold_23	retained_exon	4950067	4950205	+	asmbl_31540	none	Trinity_GG_31594_c0_g1_i1,blat.proc3825176.chain_2824	2	STRG.25886.1,Trinity_GG_31594_c0_g1_i3,blat.proc3825176.chain_2822	3
scaffold_18	retained_exon	3916064	3916635	-	asmbl_19784	none	STRG.21203.2	1	STRG.21203.3	1
scaffold_19	alternate_exon	3549863	3549922	+	asmbl_21331	none	STRG.22045.1	1	STRG.22045.2	1
scaffold_3	ends_in_intron	8168189	8168189	-	asmbl_39011,asmbl_39012	none	Trinity_GG_1828_c12_g1_i1,blat.proc3825148.chain_3286	2	blat.proc3825148.chain_3276,blat.proc3825148.chain_3277	2
scaffold_5	alternate_exon	135750	136166	+	asmbl_45074	none	STRG.5577.3	1	STRG.5577.2	1
scaffold_7	ends_in_intron	18667683	18667683	-	asmbl_51493	none	blat.proc3825152.chain_2002	1	STRG.9680.1,Trinity_GG_5435_c0_g1_i2,blat.proc3825152.chain_2003	3
scaffold_12	retained_exon	9827830	9827884	+	asmbl_7882	none	STRG.14953.1,Trinity_GG_25567_c0_g1_i1,blat.proc3825170.chain_3499	3	STRG.14953.2,Trinity_GG_25567_c0_g1_i2,blat.proc3825170.chain_3500	3
scaffold_28	alt_acceptor	3745698	3745699	-	asmbl_38164,asmbl_38165,asmbl_38171	none	STRG.29587.2,STRG.29587.3,STRG.29587.4	3	STRG.29587.1,blat.proc3825162.chain_2740	2
scaffold_15	retained_intron	7840903	7841007	+	asmbl_15305	none	blat.proc3825172.chain_3048	1	STRG.18362.1,blat.proc3825172.chain_3049,blat.proc3825172.chain_3050	3
scaffold_21	alternate_exon	704023	704068	-	asmbl_27357	none	Trinity_GG_13202_c0_g1_i4,blat.proc3825160.chain_797	2	STRG.23759.1,Trinity_GG_13202_c0_g1_i8,Trinity_GG_13202_c0_g2_i1,blat.proc3825160.chain_793,blat.proc3825160.chain_796,blat.proc3825160.chain_799	6
scaffold_10	alternate_exon	7836618	7839806	+	asmbl_3305	none	STRG.12576.1	1	STRG.12576.2	1
scaffold_19	retained_intron	13215875	13216174	-	asmbl_22609	none	STRG.22653.2,Trinity_GG_12588_c1_g1_i4,blat.proc3825158.chain_3435	3	Trinity_GG_12588_c1_g1_i13,blat.proc3825158.chain_3429	2
scaffold_13	starts_in_intron	4161	4161	+	asmbl_10448,asmbl_10455	none	STRG.15424.3,Trinity_GG_25787_c0_g1_i1,Trinity_GG_25787_c0_g1_i7,blat.proc3825172.chain_137,blat.proc3825172.chain_138	5	STRG.15424.1,STRG.15424.2,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i6,blat.proc3825172.chain_134,blat.proc3825172.chain_141	6
scaffold_6	ends_in_intron	5268470	5268470	+	asmbl_46935	none	STRG.7498.1,blat.proc3825166.chain_3698	2	STRG.7498.3,blat.proc3825166.chain_3700	2
scaffold_8	ends_in_intron	17944404	17944404	+	asmbl_53520	none	blat.proc3825168.chain_3166	1	STRG.10704.1,blat.proc3825168.chain_3167,blat.proc3825168.chain_3168	3
scaffold_9	skipped_exon	6992294	6992756	+	asmbl_54120	none	STRG.11214.3,blat.proc3825168.chain_3698	2	STRG.11214.2,blat.proc3825168.chain_3697	2
scaffold_3	starts_in_intron	11504618	11504618	+	asmbl_40353	none	Trinity_GG_19340_c0_g1_i3,blat.proc3825166.chain_104	2	STRG.3587.1,Trinity_GG_19340_c0_g1_i2,blat.proc3825166.chain_103,blat.proc3825166.chain_106	4
scaffold_2	alternate_exon	14203487	14203709	-	asmbl_23577	none	blat.proc3825148.chain_2404	1	STRG.2414.1,STRG.2414.4,blat.proc3825148.chain_2405,blat.proc3825148.chain_2407	4
scaffold_9	alt_donor	8395093	8395094	+	asmbl_54166,asmbl_54168	none	STRG.11261.3,blat.proc3825170.chain_63	2	STRG.11261.1,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_61	4
scaffold_6	alt_donor	12999537	12999538	-	asmbl_48863,asmbl_48868	none	STRG.8068.5,blat.proc3825152.chain_491	2	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,blat.proc3825152.chain_488,blat.proc3825152.chain_492,blat.proc3825152.chain_495	7
scaffold_12	ends_in_intron	9539114	9539114	-	asmbl_8680	none	blat.proc3825154.chain_3435	1	STRG.14934.1,Trinity_GG_8330_c0_g1_i2,blat.proc3825154.chain_3434	3
scaffold_7	spliced_intron	11145104	11146469	+	asmbl_50152	none	STRG.9262.1,blat.proc3825168.chain_1787,blat.proc3825168.chain_1789	3	STRG.9262.2,blat.proc3825168.chain_1784,blat.proc3825168.chain_1785,blat.proc3825168.chain_1786,blat.proc3825168.chain_1788,blat.proc3825168.chain_1790,blat.proc3825168.chain_1791	7
scaffold_1	retained_intron	12334369	12334829	-	asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_706	none	STRG.849.2,Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_831,blat.proc3825148.chain_837	4	STRG.849.1,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	8
scaffold_3	alt_acceptor	4288038	4288039	+	asmbl_39997	none	STRG.3135.3	1	STRG.3135.1	1
scaffold_12	alternate_exon	9229443	9229748	-	asmbl_8658	none	STRG.14924.1,blat.proc3825154.chain_3389	2	STRG.14924.3,blat.proc3825154.chain_3390	2
scaffold_14	ends_in_intron	11632488	11632488	+	asmbl_12393	none	blat.proc3825172.chain_2224	1	STRG.17504.1	1
scaffold_2	spliced_intron	4687220	4687254	-	asmbl_23086,asmbl_23088	none	STRG.1889.2,STRG.1889.3	2	STRG.1889.1,Trinity_GG_1043_c0_g1_i1,blat.proc3825148.chain_1850	3
scaffold_5	alt_donor	5729862	5729863	+	asmbl_45358	none	STRG.5990.2	1	STRG.5990.1,blat.proc3825166.chain_2117,blat.proc3825166.chain_2118	3
scaffold_8	starts_in_intron	14423126	14423126	-	asmbl_52315	none	STRG.10526.1,blat.proc3825152.chain_2689	2	STRG.10526.2	1
scaffold_3	spliced_intron	10302177	10302270	+	asmbl_40263	none	Trinity_GG_19250_c1_g1_i3,blat.proc3825164.chain_3698	2	Trinity_GG_19250_c1_g1_i5,blat.proc3825164.chain_3701	2
scaffold_16	alt_acceptor	315092	315093	-	asmbl_16854	none	STRG.19022.1,blat.proc3825158.chain_156	2	STRG.19022.2,STRG.19022.3,STRG.19022.4,blat.proc3825158.chain_155	4
scaffold_1	starts_in_intron	176123	176123	-	asmbl_11,asmbl_15	none	STRG.16.2,blat.proc3825148.chain_23,blat.proc3825148.chain_26	3	STRG.16.1,Trinity_GG_12_c0_g1_i5,blat.proc3825148.chain_24,blat.proc3825148.chain_25	4
scaffold_9	skipped_exon	9530448	9530758	-	asmbl_55192	none	blat.proc3825152.chain_3550	1	STRG.11314.1,STRG.11314.2,blat.proc3825152.chain_3548,blat.proc3825152.chain_3549	4
scaffold_7	alt_acceptor	286427	286428	+	asmbl_49550	none	STRG.8603.2	1	STRG.8603.1,Trinity_GG_22049_c0_g1_i1,Trinity_GG_22049_c0_g1_i3	3
scaffold_19	alternate_exon	4865464	4866797	+	asmbl_21343	none	STRG.22065.3,blat.proc3825174.chain_3068	2	STRG.22065.2	1
scaffold_1	alt_donor	12489299	12489300	+	asmbl_2227	none	STRG.862.2,Trinity_GG_17849_c0_g1_i2,blat.proc3825164.chain_1053	3	STRG.862.3	1
scaffold_13	retained_intron	4803	5026	+	asmbl_10448,asmbl_10449,asmbl_10450,asmbl_10451,asmbl_10455	none	STRG.15424.1,STRG.15424.2,STRG.15424.3,Trinity_GG_25787_c0_g1_i1,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,Trinity_GG_25787_c0_g1_i8,blat.proc3825172.chain_134,blat.proc3825172.chain_135,blat.proc3825172.chain_137,blat.proc3825172.chain_138,blat.proc3825172.chain_141	13	Trinity_GG_25787_c0_g1_i4,blat.proc3825172.chain_139	2
scaffold_3	spliced_intron	13423924	13424030	-	asmbl_39262,asmbl_39265	none	STRG.3693.3,blat.proc3825148.chain_3585	2	STRG.3693.1,blat.proc3825148.chain_3584	2
scaffold_11	retained_intron	9829435	9831678	+	asmbl_5906	none	STRG.14008.1,Trinity_GG_25038_c0_g1_i4,Trinity_GG_25038_c0_g1_i6,blat.proc3825170.chain_2557,blat.proc3825170.chain_2560,blat.proc3825170.chain_2561	6	STRG.14008.2,blat.proc3825170.chain_2556	2
scaffold_11	alt_acceptor	9699803	9699804	-	asmbl_6956	none	blat.proc3825154.chain_2535	1	STRG.13992.2	1
scaffold_7	alt_acceptor	10710445	10710446	+	asmbl_50141	none	STRG.9249.1,blat.proc3825168.chain_1733	2	STRG.9249.2	1
scaffold_27	skipped_exon	9331939	9334621	-	asmbl_37130,asmbl_37133	none	STRG.29184.1,blat.proc3825162.chain_2361,blat.proc3825162.chain_2363	3	STRG.29184.2	1
scaffold_25	alt_acceptor	7318063	7318064	-	asmbl_34393	none	Trinity_GG_15441_c0_g1_i3,blat.proc3825162.chain_910	2	STRG.27577.1	1
scaffold_1	starts_in_intron	12183740	12183740	-	asmbl_689	none	blat.proc3825148.chain_756	1	STRG.840.1	1
scaffold_21	alternate_exon	823657	833404	+	asmbl_28310	none	STRG.23777.1,blat.proc3825176.chain_912	2	STRG.23777.3	1
scaffold_1	retained_intron	20352061	20352267	+	asmbl_2620	none	blat.proc3825164.chain_1585,blat.proc3825164.chain_1587,blat.proc3825164.chain_1588	3	STRG.1396.1,STRG.1396.6,STRG.1396.8,blat.proc3825164.chain_1584	4
scaffold_7	starts_in_intron	8197554	8197554	+	asmbl_49967	none	Trinity_GG_22323_c0_g1_i2,blat.proc3825168.chain_1546	2	STRG.9057.1,Trinity_GG_22323_c0_g1_i4,blat.proc3825168.chain_1545,blat.proc3825168.chain_1547,blat.proc3825168.chain_1548	5
scaffold_12	spliced_intron	5636130	5636448	-	asmbl_8518	none	Trinity_GG_8225_c0_g1_i1,blat.proc3825154.chain_3253	2	STRG.14715.1,blat.proc3825154.chain_3252	2
scaffold_5	spliced_intron	14568812	14568989	-	asmbl_44599,asmbl_44601	none	STRG.6658.1,STRG.6658.2,blat.proc3825150.chain_2785	3	blat.proc3825150.chain_2783,blat.proc3825150.chain_2784	2
scaffold_2	ends_in_intron	6901009	6901009	+	asmbl_24507	none	Trinity_GG_18453_c0_g2_i1,blat.proc3825164.chain_2161	2	STRG.2036.1,STRG.2036.2,STRG.2036.3,blat.proc3825164.chain_2155,blat.proc3825164.chain_2158,blat.proc3825164.chain_2160	6
scaffold_8	skipped_exon	12920184	12920588	-	asmbl_52257	none	STRG.10480.4	1	STRG.10480.2,STRG.10480.3,STRG.10480.5,STRG.10480.6,STRG.10480.7,blat.proc3825152.chain_2736,blat.proc3825152.chain_2737,blat.proc3825152.chain_2738	8
scaffold_6	alternate_exon	1763458	1763623	+	asmbl_46743	none	STRG.7226.2	1	STRG.7226.1,blat.proc3825166.chain_3349	2
scaffold_22	starts_in_intron	8290167	8290167	-	asmbl_29476	none	blat.proc3825160.chain_2332	1	STRG.25187.1,blat.proc3825160.chain_2333	2
scaffold_17	spliced_intron	12090439	12090468	+	asmbl_19257	none	STRG.20737.2	1	STRG.20737.3	1
scaffold_19	ends_in_intron	1665645	1665645	-	asmbl_22039	none	Trinity_GG_12228_c1_g1_i1,blat.proc3825158.chain_2770	2	STRG.21926.1,STRG.21926.2,blat.proc3825158.chain_2768,blat.proc3825158.chain_2769	4
scaffold_17	alternate_exon	7849365	7849473	+	asmbl_18925	none	STRG.20411.3	1	STRG.20411.2	1
scaffold_3	ends_in_intron	3270419	3270419	-	asmbl_38763,asmbl_38766,asmbl_38767	none	Trinity_GG_1668_c0_g1_i5,blat.proc3825148.chain_2949,blat.proc3825148.chain_2951,blat.proc3825148.chain_2952	4	STRG.3073.1,STRG.3073.3,blat.proc3825148.chain_2950,blat.proc3825148.chain_2954	4
scaffold_26	alt_donor	2966167	2966168	-	asmbl_35460,asmbl_35462	none	STRG.27989.2,STRG.27989.3,blat.proc3825162.chain_1299	3	STRG.27989.1,STRG.27989.4,STRG.27989.5,Trinity_GG_15696_c1_g1_i1,blat.proc3825162.chain_1300,blat.proc3825162.chain_1301,blat.proc3825162.chain_1302	7
scaffold_5	retained_intron	10170936	10171022	+	asmbl_45666	none	blat.proc3825166.chain_2513	1	STRG.6320.1,blat.proc3825166.chain_2512	2
scaffold_19	spliced_intron	12437236	12437460	+	asmbl_21799,asmbl_21803	none	STRG.22571.1,blat.proc3825174.chain_3594,blat.proc3825174.chain_3598	3	blat.proc3825174.chain_3596,blat.proc3825174.chain_3597	2
scaffold_17	ends_in_intron	9856645	9856645	-	asmbl_18211	none	STRG.20605.3,Trinity_GG_11592_c1_g1_i1,blat.proc3825158.chain_1634	3	STRG.20605.1,STRG.20605.2,Trinity_GG_11592_c0_g1_i3,blat.proc3825158.chain_1632	4
scaffold_4	starts_in_intron	12340785	12340785	-	asmbl_42898	none	blat.proc3825150.chain_1057	1	STRG.4868.1,STRG.4868.2,blat.proc3825150.chain_1054	3
scaffold_6	retained_intron	17671975	17672065	+	asmbl_47772,asmbl_47774,asmbl_47777	none	STRG.8462.3,Trinity_GG_21933_c0_g1_i6,blat.proc3825168.chain_865,blat.proc3825168.chain_866,blat.proc3825168.chain_868	5	STRG.8462.1,blat.proc3825168.chain_870	2
scaffold_19	alternate_exon	7579100	7584123	+	asmbl_21471	none	STRG.22236.2,blat.proc3825174.chain_3233,blat.proc3825174.chain_3236	3	blat.proc3825174.chain_3240	1
scaffold_22	ends_in_intron	9946229	9946229	+	asmbl_30330	none	STRG.25344.1	1	STRG.25344.2	1
scaffold_17	retained_exon	2355383	2358219	+	asmbl_18637	none	STRG.20030.1,blat.proc3825174.chain_907	2	STRG.20030.6	1
scaffold_9	alt_donor	1705077	1705078	-	asmbl_54838	none	STRG.10868.1	1	STRG.10868.4	1
scaffold_10	starts_in_intron	11506320	11506320	+	asmbl_3468	none	Trinity_GG_24350_c0_g1_i4,blat.proc3825170.chain_1365	2	STRG.12804.1,blat.proc3825170.chain_1363,blat.proc3825170.chain_1364	3
scaffold_20	starts_in_intron	10411746	10411746	+	asmbl_26965	none	Trinity_GG_30347_c0_g1_i1,blat.proc3825176.chain_742	2	STRG.23581.2	1
scaffold_14	retained_intron	8278439	8279308	+	asmbl_12213,asmbl_12214	none	STRG.17251.1,STRG.17251.4,blat.proc3825172.chain_2028,blat.proc3825172.chain_2029	4	STRG.17251.3	1
scaffold_19	skipped_exon	3682622	3683432	+	asmbl_21332	none	STRG.22058.2	1	STRG.22058.1,STRG.22058.3	2
scaffold_17	alt_donor	4289170	4289171	-	asmbl_17846,asmbl_17847	none	STRG.20187.1,blat.proc3825158.chain_1188,blat.proc3825158.chain_1189	3	blat.proc3825158.chain_1190	1
scaffold_4	retained_intron	6247748	6247873	+	asmbl_41380,asmbl_41382,asmbl_41383	none	STRG.4494.1,STRG.4494.3,blat.proc3825166.chain_943,blat.proc3825166.chain_944	4	STRG.4494.2,blat.proc3825166.chain_945	2
scaffold_11	alt_donor	9136353	9136354	-	asmbl_6916	none	blat.proc3825154.chain_2461	1	STRG.13953.3	1
scaffold_1	alternate_exon	12110966	12111686	+	asmbl_2177	none	STRG.826.1,blat.proc3825164.chain_952	2	STRG.826.2,Trinity_GG_17804_c0_g1_i1,blat.proc3825164.chain_951,blat.proc3825164.chain_953,blat.proc3825164.chain_954	5
scaffold_26	alternate_exon	1321803	1321985	-	asmbl_35400	none	STRG.27913.2	1	STRG.27913.1,STRG.27913.3	2
scaffold_27	alternate_exon	8934047	8934213	-	asmbl_37121	none	STRG.29138.1	1	STRG.29138.2	1
scaffold_5	retained_intron	6708613	6708819	-	asmbl_44132	none	STRG.6077.1,blat.proc3825150.chain_2231	2	STRG.6077.2,Trinity_GG_3388_c0_g1_i1,Trinity_GG_3388_c0_g1_i2,blat.proc3825150.chain_2230,blat.proc3825150.chain_2232	5
scaffold_12	alt_donor	7173476	7173477	+	asmbl_7723	none	blat.proc3825170.chain_3304	1	STRG.14794.1,STRG.14794.2,blat.proc3825170.chain_3303,blat.proc3825170.chain_3305	4
scaffold_14	starts_in_intron	8224573	8224573	+	asmbl_12210	none	STRG.17238.2,Trinity_GG_26813_c0_g1_i1,blat.proc3825172.chain_2033	3	STRG.17238.1	1
scaffold_12	alt_donor	11585409	11585410	-	asmbl_8817	none	STRG.15082.2,blat.proc3825154.chain_3557	2	STRG.15082.1	1
scaffold_1	ends_in_intron	7174415	7174415	+	asmbl_1886	none	blat.proc3825164.chain_615	1	STRG.511.1,blat.proc3825164.chain_617	2
scaffold_6	skipped_exon	18210334	18211757	-	asmbl_49231	none	STRG.8496.2	1	STRG.8496.1	1
scaffold_10	skipped_exon	4130696	4132212	-	asmbl_4260,asmbl_4262	none	STRG.12250.1,STRG.12250.3,blat.proc3825154.chain_830	3	STRG.12250.2,blat.proc3825154.chain_829	2
scaffold_9	retained_intron	17610765	17610884	-	asmbl_55659,asmbl_55661,asmbl_55666	none	STRG.11851.2,STRG.11851.3,STRG.11851.4,Trinity_GG_6530_c0_g2_i1,blat.proc3825154.chain_298	5	STRG.11851.1,blat.proc3825154.chain_294,blat.proc3825154.chain_295,blat.proc3825154.chain_296	4
scaffold_25	alt_donor	666103	666104	+	asmbl_33349	none	STRG.27122.1	1	STRG.27122.2	1
scaffold_13	alternate_exon	8894343	8895620	-	asmbl_9997	none	STRG.16155.2	1	STRG.16155.3,Trinity_GG_9057_c0_g1_i1,blat.proc3825156.chain_1023	3
scaffold_4	alt_acceptor	17524250	17524251	-	asmbl_43281	none	STRG.5338.1,blat.proc3825150.chain_1523	2	STRG.5338.2	1
scaffold_4	starts_in_intron	2740902	2740902	-	asmbl_42403	none	blat.proc3825150.chain_403	1	STRG.4238.1,blat.proc3825150.chain_404	2
scaffold_5	skipped_exon	5737985	5739761	+	asmbl_45362	none	STRG.5992.3,blat.proc3825166.chain_2133	2	STRG.5992.4,STRG.5992.5,STRG.5992.6,blat.proc3825166.chain_2131,blat.proc3825166.chain_2135	5
scaffold_17	ends_in_intron	536195	536195	+	asmbl_18548	none	blat.proc3825174.chain_785	1	STRG.19902.1,STRG.19902.2,STRG.19902.3,blat.proc3825174.chain_784,blat.proc3825174.chain_786,blat.proc3825174.chain_787,blat.proc3825174.chain_788,blat.proc3825174.chain_789	8
scaffold_7	starts_in_intron	286069	286069	+	asmbl_49552	none	Trinity_GG_22049_c0_g1_i1	1	STRG.8603.1,STRG.8603.2,Trinity_GG_22049_c0_g1_i3	3
scaffold_13	retained_exon	11380238	11380872	-	asmbl_10084	none	STRG.16301.1,blat.proc3825156.chain_1174	2	STRG.16301.2,blat.proc3825156.chain_1172	2
scaffold_3	skipped_exon	2182686	2183829	-	asmbl_38732	none	STRG.3017.1,blat.proc3825148.chain_2898,blat.proc3825178.chain_3397	3	blat.proc3825148.chain_2899,blat.proc3825178.chain_3398	2
scaffold_1	spliced_intron	7290185	7290684	+	asmbl_1898	none	STRG.520.2	1	STRG.520.3,Trinity_GG_17630_c0_g1_i1,Trinity_GG_17630_c0_g1_i2,blat.proc3825164.chain_641,blat.proc3825164.chain_642	5
scaffold_11	alternate_exon	194620	194671	+	asmbl_5274	none	STRG.13252.2,Trinity_GG_24600_c0_g1_i2,blat.proc3825170.chain_1806	3	STRG.13252.1,blat.proc3825170.chain_1804,blat.proc3825170.chain_1805	3
scaffold_1	skipped_exon	11175075	11175728	+	asmbl_2084	none	blat.proc3825164.chain_913	1	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_909,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_915	9
scaffold_8	spliced_intron	9651612	9651635	+	asmbl_53096,asmbl_53097,asmbl_53098	none	blat.proc3825168.chain_2808,blat.proc3825168.chain_2809,blat.proc3825168.chain_2810	3	STRG.10219.1,STRG.10219.2,STRG.10219.3,STRG.10219.5	4
scaffold_11	alternate_exon	576738	576787	+	asmbl_5292	none	STRG.13273.2	1	STRG.13273.1	1
scaffold_10	spliced_intron	3732047	3732294	+	asmbl_3065,asmbl_3066	none	STRG.12202.1,STRG.12202.2,blat.proc3825170.chain_914,blat.proc3825170.chain_915	4	blat.proc3825170.chain_913	1
scaffold_17	ends_in_intron	5689579	5689579	-	asmbl_17946	none	Trinity_GG_11393_c0_g1_i1,blat.proc3825158.chain_1314	2	STRG.20271.1,blat.proc3825158.chain_1315	2
scaffold_10	spliced_intron	7672393	7672816	+	asmbl_3293	none	STRG.12556.4	1	STRG.12556.2	1
scaffold_15	alt_donor	15409801	15409802	+	asmbl_15767,asmbl_15768,asmbl_15772	none	STRG.18930.10,STRG.18930.3,STRG.18930.6,blat.proc3825172.chain_3586,blat.proc3825172.chain_3589	5	STRG.18930.5,STRG.18930.7,blat.proc3825172.chain_3587	3
scaffold_23	retained_intron	6634496	6634635	+	asmbl_31636	none	blat.proc3825176.chain_2895	1	STRG.26012.1,STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897,blat.proc3825176.chain_2898	6
scaffold_7	alternate_exon	1401848	1402106	-	asmbl_50721	none	blat.proc3825152.chain_1117	1	STRG.8652.1,blat.proc3825152.chain_1118,blat.proc3825152.chain_1124	3
scaffold_5	alt_donor	10534504	10534505	-	asmbl_44360	none	STRG.6342.2,blat.proc3825150.chain_2542	2	STRG.6342.3	1
scaffold_9	alternate_exon	4206166	4207808	+	asmbl_53941	none	STRG.11024.3,Trinity_GG_23408_c0_g1_i1,blat.proc3825168.chain_3483	3	STRG.11024.1,blat.proc3825168.chain_3487	2
scaffold_24	spliced_intron	6223967	6224182	-	asmbl_32946,asmbl_32947,asmbl_32948,asmbl_32949,asmbl_32950	none	STRG.26685.1,STRG.26685.2,STRG.26685.3,STRG.26685.4,blat.proc3825160.chain_3732,blat.proc3825160.chain_3737	6	STRG.26685.5,STRG.26685.6,Trinity_GG_14882_c0_g1_i11,blat.proc3825160.chain_3731,blat.proc3825160.chain_3735	5
scaffold_5	spliced_intron	6708613	6708819	-	asmbl_44130,asmbl_44131	none	STRG.6077.2,Trinity_GG_3388_c0_g1_i1,Trinity_GG_3388_c0_g1_i2,blat.proc3825150.chain_2230,blat.proc3825150.chain_2232	5	STRG.6077.1,blat.proc3825150.chain_2231	2
scaffold_2	alternate_exon	7323533	7324281	+	asmbl_24564	none	STRG.2062.2	1	STRG.2062.3,Trinity_GG_18498_c0_g1_i1,blat.proc3825164.chain_2279	3
scaffold_26	alternate_exon	5479265	5479362	+	asmbl_34994,asmbl_34995	none	STRG.28252.1,STRG.28252.2	2	STRG.28252.3,STRG.28252.4	2
scaffold_6	retained_exon	3030026	3030054	+	asmbl_46793	none	STRG.7311.1,blat.proc3825166.chain_3506	2	STRG.7311.2,blat.proc3825166.chain_3507	2
scaffold_5	alt_acceptor	14205735	14205736	-	asmbl_44594	none	STRG.6632.1	1	STRG.6632.2	1
scaffold_12	ends_in_intron	16402251	16402251	+	asmbl_8173	none	Trinity_GG_25733_c0_g1_i9,blat.proc3825172.chain_42	2	STRG.15402.4,STRG.15402.5,blat.proc3825172.chain_46	3
scaffold_23	retained_exon	2208940	2209242	-	asmbl_30716,asmbl_30717	none	STRG.25698.3,STRG.25698.6	2	STRG.25698.1	1
scaffold_21	retained_intron	5536873	5536964	-	asmbl_27672	none	Trinity_GG_13445_c0_g1_i9,blat.proc3825160.chain_1274	2	STRG.24086.1,STRG.24086.2,blat.proc3825160.chain_1271,blat.proc3825160.chain_1275,blat.proc3825160.chain_1277	5
scaffold_4	retained_intron	5228399	5230621	-	asmbl_42572,asmbl_42576	none	STRG.4416.1,STRG.4416.3,Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_651	4	STRG.4416.5,blat.proc3825150.chain_649	2
scaffold_14	alt_acceptor	1070397	1070398	+	asmbl_11794	none	STRG.16766.4	1	STRG.16766.1,STRG.16766.2,STRG.16766.5,Trinity_GG_26535_c0_g1_i7,blat.proc3825172.chain_1534,blat.proc3825172.chain_1536,blat.proc3825172.chain_1539	7
scaffold_20	alt_donor	253909	253910	-	asmbl_25476	none	STRG.22719.2	1	STRG.22719.3,STRG.22719.4	2
scaffold_13	retained_intron	16460036	16460350	-	asmbl_10303	none	STRG.16703.2,blat.proc3825156.chain_1486	2	STRG.16703.1,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1489	3
scaffold_24	spliced_intron	8711438	8711587	-	asmbl_33089	none	STRG.26877.1,blat.proc3825162.chain_152	2	STRG.26877.2	1
scaffold_16	alt_donor	5805818	5805819	+	asmbl_16227	none	STRG.19326.1,Trinity_GG_27849_c0_g1_i1,blat.proc3825174.chain_148	3	STRG.19326.3,Trinity_GG_27849_c0_g1_i4,blat.proc3825174.chain_150	3
scaffold_4	spliced_intron	6949321	6949391	+	asmbl_41432,asmbl_41433	none	STRG.4536.1,STRG.4536.3,Trinity_GG_19782_c0_g1_i1,blat.proc3825166.chain_911	4	STRG.4536.2,Trinity_GG_19782_c0_g1_i2,Trinity_GG_19782_c0_g1_i4,blat.proc3825166.chain_912,blat.proc3825166.chain_913	5
scaffold_5	skipped_exon	3591643	3592703	-	asmbl_43922	none	STRG.5831.3,blat.proc3825150.chain_2044	2	STRG.5831.5	1
scaffold_20	alt_donor	8154329	8154330	-	asmbl_25968	none	STRG.23363.3,blat.proc3825160.chain_489	2	STRG.23363.2,blat.proc3825160.chain_490	2
scaffold_4	retained_exon	3341413	3341484	+	asmbl_41179	none	STRG.4263.1,Trinity_GG_19693_c0_g1_i2,blat.proc3825166.chain_733	3	STRG.4263.3	1
scaffold_17	alt_donor	10054305	10054306	-	asmbl_18230	none	blat.proc3825158.chain_1671	1	STRG.20621.1,STRG.20621.2,blat.proc3825158.chain_1672	3
scaffold_1517	alt_donor	1491	1492	-	asmbl_15961	none	STRG.30614.1,blat.proc3825162.chain_3674	2	STRG.30614.2	1
scaffold_15	retained_exon	2566028	2566120	-	asmbl_14021,asmbl_14023,asmbl_14024,asmbl_14025	none	STRG.18046.2,STRG.18046.3,blat.proc3825156.chain_2864,blat.proc3825156.chain_2865,blat.proc3825156.chain_2866	5	STRG.18046.1,blat.proc3825156.chain_2867	2
scaffold_2	spliced_intron	13754726	13754863	-	asmbl_23524,asmbl_23525	none	STRG.2373.1,blat.proc3825148.chain_2330,blat.proc3825148.chain_2331	3	blat.proc3825148.chain_2332	1
scaffold_22	ends_in_intron	7415749	7415749	-	asmbl_29397	none	blat.proc3825160.chain_2234	1	STRG.25079.1,STRG.25079.2	2
scaffold_16	retained_intron	205536	205755	+	asmbl_16004,asmbl_16006	none	STRG.19008.1,Trinity_GG_27729_c0_g1_i1,Trinity_GG_27729_c0_g1_i3,blat.proc3825172.chain_3660,blat.proc3825172.chain_3661	5	Trinity_GG_27729_c0_g1_i2,blat.proc3825172.chain_3659	2
scaffold_13	spliced_intron	4457825	4458799	+	asmbl_10797	none	STRG.15770.3,blat.proc3825172.chain_511	2	STRG.15770.2,Trinity_GG_25976_c0_g1_i2,Trinity_GG_25976_c0_g2_i2,blat.proc3825172.chain_507,blat.proc3825172.chain_508	5
scaffold_5	starts_in_intron	9725434	9725434	+	asmbl_45640	none	Trinity_GG_20740_c0_g1_i2,blat.proc3825166.chain_2492	2	STRG.6285.1,STRG.6285.2,blat.proc3825166.chain_2490,blat.proc3825166.chain_2491	4
scaffold_3	skipped_exon	14479533	14479788	+	asmbl_40527	none	STRG.3789.2,blat.proc3825166.chain_289	2	STRG.3789.1,blat.proc3825166.chain_286	2
scaffold_23	retained_intron	1992483	1992563	+	asmbl_31368	none	STRG.25666.2	1	STRG.25666.1,blat.proc3825176.chain_2563	2
scaffold_9	alt_acceptor	10242517	10242518	+	asmbl_54279	none	STRG.11371.2	1	STRG.11371.1,blat.proc3825170.chain_224,blat.proc3825170.chain_230	3
scaffold_1	starts_in_intron	4572053	4572053	-	asmbl_203	none	blat.proc3825148.chain_151	1	STRG.285.1,STRG.285.5,blat.proc3825148.chain_155,blat.proc3825148.chain_157,blat.proc3825148.chain_159,blat.proc3825148.chain_160	6
scaffold_23	retained_intron	4167441	4167665	+	asmbl_31488	none	Trinity_GG_31563_c0_g1_i4,blat.proc3825176.chain_2767,blat.proc3825176.chain_2769	3	STRG.25833.1,STRG.25833.2,blat.proc3825176.chain_2766	3
scaffold_14	alt_donor	9272678	9272679	-	asmbl_13367	none	blat.proc3825156.chain_2203	1	STRG.17338.5	1
scaffold_4	alt_acceptor	7267214	7267215	+	asmbl_41480	none	STRG.4561.7,Trinity_GG_19860_c0_g1_i4,blat.proc3825166.chain_1048	3	STRG.4561.2,Trinity_GG_19860_c0_g1_i1,blat.proc3825166.chain_1050	3
scaffold_5	ends_in_intron	2549648	2549648	+	asmbl_45176	none	blat.proc3825166.chain_1997	1	STRG.5780.1,blat.proc3825166.chain_1996	2
scaffold_14	starts_in_intron	2355549	2355549	+	asmbl_11864	none	Trinity_GG_26543_c2_g1_i1,blat.proc3825172.chain_1556	2	STRG.16848.1,blat.proc3825172.chain_1555	2
scaffold_16	starts_in_intron	9144670	9144670	+	asmbl_16464	none	STRG.19514.2	1	STRG.19514.1,blat.proc3825174.chain_434,blat.proc3825174.chain_435,blat.proc3825174.chain_436,blat.proc3825174.chain_437,blat.proc3825174.chain_438	6
scaffold_27	retained_exon	9989337	9989454	+	asmbl_36555	none	STRG.29230.1,Trinity_GG_33511_c0_g1_i1,blat.proc3825178.chain_2425	3	STRG.29230.2	1
scaffold_16	skipped_exon	1252597	1254752	-	asmbl_16940	none	STRG.19087.2,blat.proc3825158.chain_224	2	STRG.19087.1,blat.proc3825158.chain_222	2
scaffold_24	alt_acceptor	2515065	2515066	+	asmbl_32103,asmbl_32104	none	STRG.26469.1,STRG.26469.2,blat.proc3825176.chain_3422	3	STRG.26469.4,blat.proc3825176.chain_3420	2
scaffold_16	spliced_intron	7910151	7910238	+	asmbl_16360	none	STRG.19445.1,Trinity_GG_27913_c0_g1_i1,blat.proc3825174.chain_282	3	Trinity_GG_27913_c0_g1_i2,blat.proc3825174.chain_281,blat.proc3825174.chain_283	3
scaffold_7	alt_acceptor	18394768	18394769	-	asmbl_51467,asmbl_51468,asmbl_51471,asmbl_51473,asmbl_51480	none	STRG.9670.1,STRG.9670.3,STRG.9670.6,STRG.9670.7,blat.proc3825152.chain_2016,blat.proc3825152.chain_2020	6	STRG.9670.2,STRG.9670.4,STRG.9670.5,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2015,blat.proc3825152.chain_2018	9
scaffold_16	alternate_exon	14542466	14546073	-	asmbl_17459	none	blat.proc3825158.chain_900,blat.proc3825158.chain_901	2	STRG.19850.2	1
scaffold_12	retained_exon	10606019	10606058	+	asmbl_7946	none	STRG.15036.2,blat.proc3825170.chain_3580	2	STRG.15036.1,STRG.15036.3,STRG.15036.4,blat.proc3825170.chain_3576,blat.proc3825170.chain_3579	5
scaffold_9	skipped_exon	15384227	15384899	+	asmbl_54559,asmbl_54560,asmbl_54564,asmbl_54565	none	STRG.11739.2,STRG.11739.4,blat.proc3825170.chain_498,blat.proc3825170.chain_499,blat.proc3825170.chain_500	5	STRG.11739.1,STRG.11739.3,blat.proc3825170.chain_501,blat.proc3825170.chain_503	4
scaffold_13	alt_donor	13972028	13972029	+	asmbl_11414,asmbl_11415,asmbl_11416	none	blat.proc3825172.chain_1171,blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	3	STRG.16448.2	1
scaffold_21	alt_acceptor	10098175	10098176	+	asmbl_28856	none	STRG.24472.1	1	STRG.24472.2	1
scaffold_2	alt_donor	2907199	2907200	-	asmbl_22945,asmbl_22946,asmbl_22947,asmbl_22948	none	STRG.1731.1,STRG.1731.2,blat.proc3825148.chain_1611,blat.proc3825148.chain_1612,blat.proc3825148.chain_1613,blat.proc3825148.chain_1614	6	blat.proc3825148.chain_1615	1
scaffold_15	retained_intron	15409993	15410185	+	asmbl_15771	none	STRG.18930.4,blat.proc3825172.chain_3591	2	STRG.18930.5,STRG.18930.9,blat.proc3825172.chain_3587	3
scaffold_10	spliced_intron	9042003	9042107	+	asmbl_3358,asmbl_3360	none	STRG.12653.1,blat.proc3825170.chain_1272,blat.proc3825170.chain_1273	3	Trinity_GG_24291_c0_g1_i2,blat.proc3825170.chain_1271	2
scaffold_16	retained_exon	14546156	14546279	-	asmbl_17461	none	STRG.19850.2	1	STRG.19850.1	1
scaffold_9	spliced_intron	15396303	15396380	+	asmbl_54566,asmbl_54567,asmbl_54568,asmbl_54571	none	STRG.11741.1,STRG.11741.2,STRG.11741.3,Trinity_GG_23876_c0_g1_i2,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i7,Trinity_GG_23876_c0_g1_i8,blat.proc3825170.chain_552,blat.proc3825170.chain_553,blat.proc3825170.chain_555,blat.proc3825170.chain_556	11	Trinity_GG_23876_c0_g1_i5,blat.proc3825170.chain_557	2
scaffold_11	spliced_intron	7924769	7925337	+	asmbl_5696,asmbl_5700	none	STRG.13804.5,STRG.13804.6,Trinity_GG_24903_c0_g1_i2,blat.proc3825170.chain_2323	4	STRG.13804.2,STRG.13804.3,Trinity_GG_24903_c0_g1_i4,blat.proc3825170.chain_2322	4
scaffold_24	starts_in_intron	7101327	7101327	+	asmbl_32366	none	Trinity_GG_32109_c0_g1_i1,blat.proc3825176.chain_3716	2	STRG.26761.1,STRG.26761.2	2
scaffold_27	alternate_exon	3404336	3405340	+	asmbl_36198	none	STRG.28815.1,Trinity_GG_33242_c0_g1_i1,blat.proc3825178.chain_1960	3	STRG.28815.2	1
scaffold_23	retained_exon	5578436	5578543	+	asmbl_31582,asmbl_31583,asmbl_31585	none	STRG.25933.4,blat.proc3825176.chain_2834,blat.proc3825176.chain_2835	3	STRG.25933.1,STRG.25933.3,STRG.25933.5,blat.proc3825176.chain_2838,blat.proc3825176.chain_2839,blat.proc3825176.chain_2841	6
scaffold_19	alt_donor	7884752	7884753	-	asmbl_22264	none	STRG.22253.1,blat.proc3825158.chain_3039	2	STRG.22253.2	1
scaffold_23	spliced_intron	10910316	10910432	-	asmbl_31169,asmbl_31171	none	STRG.26293.1,STRG.26293.3	2	STRG.26293.2	1
scaffold_21	alt_acceptor	8283333	8283334	-	asmbl_27913	none	STRG.24367.1,blat.proc3825160.chain_1532	2	STRG.24367.2,blat.proc3825160.chain_1531	2
scaffold_4	retained_intron	6282645	6283128	-	asmbl_42669,asmbl_42672	none	Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,blat.proc3825150.chain_777,blat.proc3825150.chain_780	4	STRG.4498.1,STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i1,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,blat.proc3825150.chain_773,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_779	10
scaffold_28	starts_in_intron	7306292	7306292	-	asmbl_38393	none	STRG.29803.1	1	STRG.29803.3	1
scaffold_15	retained_exon	3368556	3368688	-	asmbl_14093	none	STRG.18109.2	1	STRG.18109.1	1
scaffold_4	alt_acceptor	13807112	13807113	+	asmbl_41824	none	STRG.5000.1,blat.proc3825166.chain_1428	2	STRG.5000.2,blat.proc3825166.chain_1429	2
scaffold_1	retained_exon	12464320	12464403	-	asmbl_718	none	STRG.867.2	1	STRG.867.3,STRG.867.5	2
scaffold_14	retained_intron	218317	218775	-	asmbl_12805,asmbl_12806,asmbl_12808	none	STRG.16718.2,STRG.16718.3,blat.proc3825156.chain_1511,blat.proc3825156.chain_1513,blat.proc3825156.chain_1514	5	STRG.16718.1,STRG.16718.4,blat.proc3825156.chain_1512	3
scaffold_24	spliced_intron	6834417	6834757	+	asmbl_32346,asmbl_32347,asmbl_32348	none	STRG.26736.1,STRG.26736.2,STRG.26736.4,blat.proc3825176.chain_3729,blat.proc3825176.chain_3734	5	blat.proc3825176.chain_3732	1
scaffold_19	starts_in_intron	5641130	5641130	-	asmbl_22181	none	blat.proc3825158.chain_2945	1	blat.proc3825158.chain_2946,blat.proc3825158.chain_2947	2
scaffold_1	spliced_intron	5207312	5207851	+	asmbl_1715	none	blat.proc3825164.chain_468	1	blat.proc3825164.chain_464,blat.proc3825164.chain_465,blat.proc3825164.chain_471	3
scaffold_14	spliced_intron	15565904	15565930	+	asmbl_12619,asmbl_12625	none	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	3	STRG.17796.1,STRG.17796.2	2
scaffold_6	spliced_intron	5198065	5198348	+	asmbl_46916,asmbl_46917,asmbl_46920,asmbl_46921,asmbl_46923,asmbl_46924,asmbl_46926	none	STRG.7496.1,STRG.7496.2,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3547,blat.proc3825166.chain_3548,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3554	10	STRG.7496.5,STRG.7496.6,Trinity_GG_21344_c0_g1_i6,blat.proc3825166.chain_3555	4
scaffold_18	retained_exon	9789245	9789346	+	asmbl_20893	none	STRG.21586.1	1	STRG.21586.2,blat.proc3825174.chain_2556	2
scaffold_2	retained_intron	16288201	16288293	+	asmbl_25113	none	blat.proc3825164.chain_2850	1	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2851,blat.proc3825164.chain_2852	4
scaffold_21	starts_in_intron	472403	472403	+	asmbl_28266	none	Trinity_GG_30441_c0_g1_i5,blat.proc3825176.chain_918	2	STRG.23742.1,blat.proc3825176.chain_916,blat.proc3825176.chain_917	3
scaffold_3	starts_in_intron	8220321	8220321	-	asmbl_39026	none	STRG.3400.1,blat.proc3825148.chain_3247	2	STRG.3400.2	1
scaffold_6	alternate_exon	5266625	5268470	+	asmbl_46935	none	STRG.7498.1,Trinity_GG_21420_c0_g1_i4,blat.proc3825166.chain_3698	3	STRG.7498.2,blat.proc3825166.chain_3697	2
scaffold_16	retained_intron	14527856	14527939	-	asmbl_17456	none	STRG.19833.2	1	STRG.19833.1,blat.proc3825158.chain_871	2
scaffold_7	ends_in_intron	2742005	2742005	+	asmbl_49666	none	STRG.8704.2	1	STRG.8704.1,blat.proc3825168.chain_1145	2
scaffold_18	spliced_intron	13805940	13806190	+	asmbl_21036,asmbl_21038	none	STRG.21822.1,Trinity_GG_29370_c0_g1_i1,Trinity_GG_29370_c0_g1_i3,blat.proc3825174.chain_2835,blat.proc3825174.chain_2837	5	blat.proc3825174.chain_2838,blat.proc3825174.chain_2839	2
scaffold_2	skipped_exon	10393641	10394971	+	asmbl_24703	none	STRG.2209.1	1	STRG.2209.2	1
scaffold_17	starts_in_intron	12199347	12199347	+	asmbl_19280	none	blat.proc3825174.chain_1664	1	STRG.20759.1,STRG.20759.2,blat.proc3825174.chain_1662	3
scaffold_17	retained_intron	1360485	1360559	-	asmbl_17703	none	blat.proc3825158.chain_1023	1	STRG.19976.1,blat.proc3825158.chain_1024	2
scaffold_19	ends_in_intron	3668358	3668358	-	asmbl_22120,asmbl_22122	none	Trinity_GG_12309_c0_g1_i4,blat.proc3825158.chain_2895,blat.proc3825158.chain_2898	3	STRG.22046.1,STRG.22046.2,Trinity_GG_12309_c0_g1_i1,Trinity_GG_12309_c0_g1_i3,Trinity_GG_12309_c0_g1_i5,Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2893,blat.proc3825158.chain_2894,blat.proc3825158.chain_2897,blat.proc3825158.chain_2899	10
scaffold_16	retained_intron	433622	433712	-	asmbl_16869,asmbl_16873,asmbl_16874	none	blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_200	3	STRG.19041.2,blat.proc3825158.chain_201,blat.proc3825158.chain_202,blat.proc3825158.chain_204	4
scaffold_7	alt_donor	3954991	3954992	-	asmbl_50830,asmbl_50832,asmbl_50837,asmbl_50838,asmbl_50839	none	STRG.8794.2,blat.proc3825152.chain_1226,blat.proc3825152.chain_1232,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235,blat.proc3825152.chain_1236	6	STRG.8794.1,blat.proc3825152.chain_1227,blat.proc3825152.chain_1228,blat.proc3825152.chain_1230,blat.proc3825152.chain_1231	5
scaffold_321	alt_acceptor	2237	2238	-	asmbl_40957	none	STRG.30277.2,Trinity_GG_16988_c0_g1_i2,blat.proc3825162.chain_3406	3	STRG.30277.1,Trinity_GG_16988_c0_g1_i3,blat.proc3825162.chain_3408	3
scaffold_26	ends_in_intron	8994789	8994789	+	asmbl_35193	none	Trinity_GG_33057_c0_g1_i2,blat.proc3825178.chain_1567	2	STRG.28464.1,STRG.28464.2,blat.proc3825178.chain_1568	3
scaffold_2	retained_intron	7884473	7884576	-	asmbl_23292	none	Trinity_GG_1156_c0_g1_i2,blat.proc3825148.chain_2105	2	STRG.2084.1,Trinity_GG_1156_c0_g1_i1,blat.proc3825148.chain_2106	3
scaffold_19	alt_donor	3682622	3682623	+	asmbl_21332,asmbl_21333	none	STRG.22058.1,STRG.22058.2	2	STRG.22058.3	1
scaffold_25	alt_donor	7324214	7324215	-	asmbl_34396	none	STRG.27581.1	1	STRG.27581.2,STRG.27581.4,blat.proc3825178.chain_653	3
scaffold_4	alt_acceptor	4928335	4928336	+	asmbl_41321	none	blat.proc3825166.chain_870	1	STRG.4388.1,STRG.4388.2,blat.proc3825166.chain_869	3
scaffold_10	spliced_intron	13280730	13280885	+	asmbl_3590	none	STRG.12923.1	1	Trinity_GG_24437_c0_g1_i1,Trinity_GG_24437_c0_g1_i2,blat.proc3825170.chain_1536,blat.proc3825170.chain_1537	4
scaffold_1	alt_acceptor	14223359	14223360	+	asmbl_2357	none	STRG.1013.1,blat.proc3825164.chain_1150	2	STRG.1013.2,blat.proc3825164.chain_1149	2
scaffold_7	spliced_intron	4391769	4391853	+	asmbl_49734,asmbl_49736	none	Trinity_GG_22151_c0_g1_i1,blat.proc3825168.chain_1271	2	Trinity_GG_22151_c0_g1_i3,blat.proc3825168.chain_1270	2
scaffold_17	spliced_intron	8951374	8951464	+	asmbl_19048	none	STRG.20514.1,blat.proc3825174.chain_1376	2	blat.proc3825174.chain_1375	1
scaffold_2	retained_intron	7924289	7924370	-	asmbl_23298,asmbl_23299	none	blat.proc3825148.chain_2078,blat.proc3825148.chain_2079	2	STRG.2089.1,blat.proc3825148.chain_2075,blat.proc3825148.chain_2077	3
scaffold_22	retained_intron	9399585	9399781	+	asmbl_30307	none	STRG.25284.1	1	STRG.25284.3	1
scaffold_13	alt_acceptor	381535	381536	-	asmbl_9322,asmbl_9324,asmbl_9326	none	STRG.15437.3,STRG.15437.4,blat.proc3825156.chain_261,blat.proc3825156.chain_262	4	STRG.15437.1,STRG.15437.2,blat.proc3825156.chain_263	3
scaffold_15	spliced_intron	4117643	4117871	-	asmbl_14123	none	STRG.18155.2,blat.proc3825156.chain_2939	2	STRG.18155.1,STRG.18155.3,Trinity_GG_10180_c0_g1_i1,blat.proc3825156.chain_2938	4
scaffold_1	skipped_exon	20134956	20135381	-	asmbl_1171	none	STRG.1386.2	1	STRG.1386.5,blat.proc3825148.chain_1398	2
scaffold_28	spliced_intron	7421777	7421872	-	asmbl_38399	none	STRG.29817.1,blat.proc3825162.chain_2992	2	blat.proc3825162.chain_2991	1
scaffold_26	starts_in_intron	3361738	3361738	+	asmbl_34774	none	Trinity_GG_32754_c1_g1_i3,blat.proc3825178.chain_1042	2	STRG.28022.2,blat.proc3825178.chain_1041,blat.proc3825178.chain_1043	3
scaffold_17	spliced_intron	7054908	7055141	-	asmbl_18029	none	STRG.20371.1,blat.proc3825158.chain_1357	2	blat.proc3825158.chain_1356	1
scaffold_22	starts_in_intron	7206818	7206818	-	asmbl_29382	none	blat.proc3825160.chain_2192	1	blat.proc3825160.chain_2191	1
scaffold_21	alternate_exon	4256439	4257124	-	asmbl_27571	none	STRG.24003.2	1	STRG.24003.1,blat.proc3825160.chain_1127	2
scaffold_20	alt_acceptor	8208346	8208347	-	asmbl_25975	none	blat.proc3825160.chain_514	1	STRG.23371.1	1
scaffold_40	retained_intron	26688	26808	+	asmbl_43664	none	STRG.30039.1,Trinity_GG_33944_c0_g1_i1,blat.proc3825178.chain_3173	3	STRG.30039.2	1
scaffold_10	ends_in_intron	12895561	12895561	-	asmbl_4841	none	blat.proc3825154.chain_1476	1	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1473,blat.proc3825154.chain_1475	4
scaffold_22	alt_donor	10682750	10682751	-	asmbl_29617,asmbl_29618	none	STRG.25415.3,blat.proc3825160.chain_2610	2	STRG.25415.1,STRG.25415.2	2
scaffold_27	spliced_intron	3872262	3872498	+	asmbl_36228	none	blat.proc3825178.chain_2040	1	Trinity_GG_33287_c0_g1_i14,blat.proc3825178.chain_2050	2
scaffold_18	retained_intron	12603092	12603275	-	asmbl_20158	none	STRG.21720.1,blat.proc3825158.chain_2616	2	STRG.21720.2,blat.proc3825158.chain_2615	2
scaffold_1	alt_acceptor	12792318	12792319	-	asmbl_765	none	STRG.901.3	1	STRG.901.1,blat.proc3825148.chain_883,blat.proc3825148.chain_884	3
scaffold_14	ends_in_intron	13899086	13899086	+	asmbl_12509,asmbl_12510	none	blat.proc3825172.chain_2390,blat.proc3825172.chain_2392	2	STRG.17673.2,blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	3
scaffold_6	ends_in_intron	2488417	2488417	+	asmbl_46753,asmbl_46754,asmbl_46755	none	STRG.7248.6,blat.proc3825166.chain_3502	2	STRG.7248.1,STRG.7248.4,STRG.7248.5	3
scaffold_22	alt_acceptor	7246509	7246510	-	asmbl_29385,asmbl_29386	none	STRG.25063.1,STRG.25063.2	2	STRG.25063.3	1
scaffold_22	alternate_exon	8196111	8196198	+	asmbl_30270	none	STRG.25176.1	1	STRG.25176.2	1
scaffold_23	retained_intron	362282	362408	-	asmbl_30591,asmbl_30592,asmbl_30594,asmbl_30598,asmbl_30600	none	STRG.25564.1,STRG.25564.2,STRG.25564.3,Trinity_GG_14303_c0_g1_i3,blat.proc3825160.chain_2720,blat.proc3825160.chain_2723,blat.proc3825160.chain_2727	7	blat.proc3825160.chain_2722	1
scaffold_5	alt_acceptor	9081427	9081428	+	asmbl_45599,asmbl_45602,asmbl_45603,asmbl_45604	none	STRG.6247.1,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	5	STRG.6247.2	1
scaffold_23	ends_in_intron	271684	271684	-	asmbl_30578	none	blat.proc3825160.chain_2688	1	STRG.25550.1,blat.proc3825160.chain_2687,blat.proc3825160.chain_2689,blat.proc3825160.chain_2690,blat.proc3825160.chain_2691	5
scaffold_28	starts_in_intron	3245316	3245316	+	asmbl_37463	none	Trinity_GG_33656_c0_g2_i1,blat.proc3825178.chain_2662	2	STRG.29544.1,STRG.29544.2	2
scaffold_12	retained_intron	7275468	7275640	-	asmbl_8565	none	Trinity_GG_8260_c0_g1_i5,blat.proc3825154.chain_3306	2	STRG.14801.1,STRG.14801.2,Trinity_GG_8260_c0_g1_i1,Trinity_GG_8260_c0_g1_i2,Trinity_GG_8260_c0_g1_i3,blat.proc3825154.chain_3307,blat.proc3825154.chain_3308,blat.proc3825154.chain_3309	8
scaffold_8	alt_donor	13162188	13162189	-	asmbl_52280	none	STRG.10489.2,blat.proc3825152.chain_2708	2	STRG.10489.1,blat.proc3825152.chain_2707	2
scaffold_15	retained_intron	4232612	4232777	+	asmbl_15130	none	Trinity_GG_27280_c0_g1_i7,blat.proc3825172.chain_2844	2	STRG.18172.1,STRG.18172.2,blat.proc3825172.chain_2836,blat.proc3825172.chain_2837,blat.proc3825172.chain_2838,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842,blat.proc3825172.chain_2843	9
scaffold_2	retained_intron	17932892	17932980	-	asmbl_23760	none	STRG.2682.1,blat.proc3825148.chain_2618	2	STRG.2682.2	1
scaffold_11	retained_intron	1985477	1985515	+	asmbl_5351	none	blat.proc3825154.chain_1937	1	STRG.13361.1	1
scaffold_1	starts_in_intron	16484564	16484564	-	asmbl_992	none	blat.proc3825148.chain_1103	1	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1098,blat.proc3825148.chain_1101,blat.proc3825148.chain_1102,blat.proc3825148.chain_1104	7
scaffold_10	starts_in_intron	8900004	8900004	-	asmbl_4634	none	blat.proc3825154.chain_1168	1	STRG.12638.1,STRG.12638.2	2
scaffold_1	alt_donor	14355967	14355968	-	asmbl_900,asmbl_902	none	blat.proc3825148.chain_1037,blat.proc3825148.chain_1040	2	blat.proc3825148.chain_1036	1
scaffold_18	spliced_intron	13649242	13649267	+	asmbl_21031	none	STRG.21798.2	1	blat.proc3825174.chain_2823	1
scaffold_26	spliced_intron	903117	903347	+	asmbl_34710	none	STRG.27895.1,blat.proc3825178.chain_907	2	Trinity_GG_32665_c0_g1_i1,Trinity_GG_32710_c0_g1_i1,blat.proc3825178.chain_906	3
scaffold_4	alt_donor	18758302	18758303	-	asmbl_43388	none	STRG.5465.3	1	STRG.5465.1	1
scaffold_1	alt_donor	20340823	20340824	+	asmbl_2617,asmbl_2619	none	STRG.1396.1,STRG.1396.3,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	4	STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593	5
scaffold_3	spliced_intron	9518813	9518999	+	asmbl_40227,asmbl_40228,asmbl_40229	none	STRG.3436.1,STRG.3436.2,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3677,blat.proc3825164.chain_3678	5	Trinity_GG_19245_c0_g1_i2,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i7,blat.proc3825164.chain_3674,blat.proc3825164.chain_3675,blat.proc3825164.chain_3676	6
scaffold_11	ends_in_intron	15102185	15102185	-	asmbl_7183	none	blat.proc3825154.chain_2822	1	STRG.14275.1,blat.proc3825154.chain_2823	2
scaffold_13	retained_intron	6949079	6950695	-	asmbl_9818,asmbl_9819	none	STRG.15984.1,STRG.15984.6,Trinity_GG_8951_c0_g1_i5	3	STRG.15984.2,STRG.15984.4	2
scaffold_8	alt_donor	11851423	11851424	+	asmbl_53290	none	blat.proc3825168.chain_3024	1	blat.proc3825168.chain_3015	1
scaffold_28	starts_in_intron	5580590	5580590	+	asmbl_37596	none	Trinity_GG_33772_c0_g1_i3,blat.proc3825178.chain_2875	2	STRG.29692.1,STRG.29692.2,Trinity_GG_33772_c0_g1_i2,Trinity_GG_33772_c0_g1_i4,Trinity_GG_33772_c0_g1_i5,blat.proc3825178.chain_2876,blat.proc3825178.chain_2878,blat.proc3825178.chain_2879	8
scaffold_16	starts_in_intron	5977471	5977471	+	asmbl_16261	none	Trinity_GG_27891_c1_g1_i3,blat.proc3825174.chain_236	2	STRG.19337.1,blat.proc3825174.chain_234	2
scaffold_17	skipped_exon	12198250	12200487	+	asmbl_19278	none	STRG.20759.3,blat.proc3825174.chain_1661	2	STRG.20759.1,blat.proc3825174.chain_1662	2
scaffold_26	retained_intron	3563207	3563305	+	asmbl_34790	none	Trinity_GG_32778_c0_g1_i5,blat.proc3825178.chain_1076	2	STRG.28036.1,STRG.28036.2,STRG.28036.4,STRG.28036.5,blat.proc3825178.chain_1077	5
scaffold_10	starts_in_intron	16531454	16531454	+	asmbl_3723	none	STRG.13128.3	1	STRG.13128.1,blat.proc3825170.chain_1651,blat.proc3825170.chain_1652,blat.proc3825170.chain_1653	4
scaffold_16	alt_acceptor	14679102	14679103	+	asmbl_16705	none	blat.proc3825174.chain_754	1	STRG.19870.1,STRG.19870.2,blat.proc3825174.chain_753	3
scaffold_4	spliced_intron	13072234	13072389	-	asmbl_42965	none	STRG.4956.1,blat.proc3825150.chain_1126	2	blat.proc3825150.chain_1125	1
scaffold_1	retained_exon	3270374	3270496	-	asmbl_144	none	STRG.204.3	1	STRG.204.1,blat.proc3825148.chain_203,blat.proc3825148.chain_204	3
scaffold_3	alt_acceptor	7220598	7220599	-	asmbl_38958	none	STRG.3325.2,blat.proc3825148.chain_3195	2	STRG.3325.1,blat.proc3825148.chain_3196	2
scaffold_4	alt_donor	10954890	10954891	+	asmbl_41689	none	blat.proc3825166.chain_1241	1	STRG.4821.1,STRG.4821.2,blat.proc3825166.chain_1243,blat.proc3825166.chain_1244	4
scaffold_6	spliced_intron	5265077	5265171	+	asmbl_46936	none	STRG.7498.2,blat.proc3825166.chain_3697	2	Trinity_GG_21420_c0_g1_i6,blat.proc3825166.chain_3699	2
scaffold_5	alt_donor	10804362	10804363	+	asmbl_45692,asmbl_45695	none	STRG.6357.1,blat.proc3825166.chain_2570	2	STRG.6357.2,blat.proc3825166.chain_2568	2
scaffold_22	alternate_exon	9900293	9900360	-	asmbl_29570	none	STRG.25334.1	1	blat.proc3825160.chain_2472	1
scaffold_14	retained_intron	3590570	3591023	+	asmbl_11956	none	STRG.16945.2,Trinity_GG_26643_c1_g1_i1,blat.proc3825172.chain_1734	3	STRG.16945.1	1
scaffold_9	starts_in_intron	8401282	8401282	-	asmbl_55128	none	STRG.11262.2,Trinity_GG_6231_c0_g1_i1,blat.proc3825152.chain_3489	3	STRG.11262.1,Trinity_GG_6231_c0_g1_i2,blat.proc3825152.chain_3488	3
scaffold_15	retained_exon	4566557	4566617	+	asmbl_15159	none	STRG.18186.2,Trinity_GG_27289_c0_g1_i2,blat.proc3825172.chain_2865	3	STRG.18186.1,Trinity_GG_27289_c0_g1_i1,Trinity_GG_27289_c0_g1_i3,blat.proc3825172.chain_2867,blat.proc3825172.chain_2869	5
scaffold_12	alt_donor	134630	134631	+	asmbl_7436,asmbl_7437,asmbl_7439	none	STRG.14431.1,STRG.14431.3,blat.proc3825170.chain_2985	3	STRG.14431.2,blat.proc3825170.chain_2984	2
scaffold_17	alt_acceptor	10123553	10123554	+	asmbl_19180,asmbl_19181	none	STRG.20628.1,STRG.20628.2	2	STRG.20628.3	1
scaffold_13	alternate_exon	5187932	5188021	-	asmbl_9678	none	STRG.15819.2,blat.proc3825156.chain_687	2	STRG.15819.1,blat.proc3825156.chain_688	2
scaffold_11	retained_intron	14528202	14528402	+	asmbl_6088	none	STRG.14251.2	1	STRG.14251.1,blat.proc3825170.chain_2781	2
scaffold_27	retained_intron	9917345	9917430	+	asmbl_36540	none	Trinity_GG_33521_c1_g1_i6,blat.proc3825178.chain_2446	2	blat.proc3825178.chain_2444	1
scaffold_20	starts_in_intron	3909656	3909656	+	asmbl_26548	none	blat.proc3825176.chain_227	1	blat.proc3825176.chain_228,blat.proc3825176.chain_230	2
scaffold_7	spliced_intron	13196688	13197490	-	asmbl_51299	none	blat.proc3825152.chain_1787	1	Trinity_GG_5301_c0_g1_i11,blat.proc3825152.chain_1782,blat.proc3825152.chain_1784,blat.proc3825152.chain_1789	4
scaffold_5	starts_in_intron	13235522	13235522	+	asmbl_45865	none	blat.proc3825166.chain_2744	1	STRG.6565.1,STRG.6565.2,STRG.6565.3,blat.proc3825166.chain_2741,blat.proc3825166.chain_2743	5
scaffold_15	retained_intron	9638324	9639423	-	asmbl_14389	none	Trinity_GG_10347_c2_g1_i14,blat.proc3825156.chain_3254	2	blat.proc3825156.chain_3249	1
scaffold_23	starts_in_intron	272523	272523	-	asmbl_30577	none	blat.proc3825160.chain_2690	1	STRG.25550.1,blat.proc3825160.chain_2688,blat.proc3825160.chain_2689,blat.proc3825160.chain_2691	4
scaffold_6	starts_in_intron	12006847	12006847	+	asmbl_47369	none	Trinity_GG_21672_c0_g1_i4,blat.proc3825168.chain_411	2	STRG.7971.1	1
scaffold_23	alt_acceptor	7907780	7907781	+	asmbl_31738	none	STRG.26096.2,blat.proc3825176.chain_3044	2	STRG.26096.1,blat.proc3825176.chain_3045,blat.proc3825176.chain_3046	3
scaffold_20	alt_acceptor	6281050	6281051	+	asmbl_26656	none	STRG.23227.2	1	STRG.23227.1	1
scaffold_285	retained_intron	1629	1871	+	asmbl_38622	none	STRG.30262.2,blat.proc3825178.chain_3356	2	blat.proc3825178.chain_3361	1
scaffold_6	ends_in_intron	10837404	10837404	-	asmbl_48717	none	Trinity_GG_4475_c0_g1_i3,blat.proc3825152.chain_283	2	STRG.7899.1,Trinity_GG_4475_c0_g1_i1,blat.proc3825152.chain_284	3
scaffold_6	retained_intron	4519219	4519479	-	asmbl_48329	none	Trinity_GG_4180_c0_g1_i1,blat.proc3825150.chain_3570	2	STRG.7431.1,blat.proc3825150.chain_3571,blat.proc3825150.chain_3572	3
scaffold_3	retained_intron	13898905	13899019	+	asmbl_40468	none	blat.proc3825166.chain_231	1	STRG.3736.1,blat.proc3825166.chain_230,blat.proc3825166.chain_232	3
scaffold_28	starts_in_intron	5253665	5253665	-	asmbl_38275	none	blat.proc3825162.chain_2791	1	STRG.29678.3,blat.proc3825162.chain_2792	2
scaffold_11	skipped_exon	8397912	8399332	+	asmbl_5764,asmbl_5766	none	STRG.13857.1,blat.proc3825170.chain_2390,blat.proc3825170.chain_2392	3	STRG.13857.3,blat.proc3825170.chain_2394	2
scaffold_12	alt_donor	6423301	6423302	-	asmbl_8535	none	STRG.14754.3,blat.proc3825154.chain_3272	2	STRG.14754.1,STRG.14754.2,blat.proc3825154.chain_3270,blat.proc3825154.chain_3271	4
scaffold_17	alternate_exon	7848313	7849895	+	asmbl_18923	none	STRG.20411.2	1	STRG.20411.3	1
scaffold_11	retained_intron	13033062	13033309	-	asmbl_7116	none	blat.proc3825154.chain_2755	1	STRG.14179.1,STRG.14179.2,STRG.14179.3,Trinity_GG_7948_c0_g1_i1,blat.proc3825154.chain_2754,blat.proc3825154.chain_2756,blat.proc3825154.chain_2757,blat.proc3825154.chain_2758	8
scaffold_21	alt_donor	1054574	1054575	-	asmbl_27374,asmbl_27379	none	STRG.23787.1,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922	3	STRG.23787.2,STRG.23787.3,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	4
scaffold_3	alternate_exon	4898960	4902028	-	asmbl_38822	none	STRG.3187.1,blat.proc3825148.chain_3019	2	STRG.3187.2	1
scaffold_25	starts_in_intron	6303948	6303948	+	asmbl_33611,asmbl_33612	none	Trinity_GG_32442_c0_g1_i14,Trinity_GG_32442_c0_g1_i3,blat.proc3825178.chain_553,blat.proc3825178.chain_554	4	STRG.27515.1,STRG.27515.2,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_557,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	8
scaffold_28	retained_exon	1434807	1434860	-	asmbl_37990,asmbl_37991	none	STRG.29342.2,STRG.29342.3,blat.proc3825162.chain_2527	3	STRG.29342.1,blat.proc3825162.chain_2528	2
scaffold_25	alternate_exon	7207492	7211713	-	asmbl_34387	none	STRG.27578.1	1	STRG.27578.2	1
scaffold_17	spliced_intron	7046365	7047019	+	asmbl_18890	none	STRG.20370.3,blat.proc3825174.chain_1225,blat.proc3825174.chain_1227	3	STRG.20370.2,Trinity_GG_28477_c0_g2_i1	2
scaffold_6	retained_intron	10898864	10899075	+	asmbl_47303	none	STRG.7907.2,Trinity_GG_21655_c0_g1_i5,blat.proc3825168.chain_380	3	STRG.7907.1,STRG.7907.3,Trinity_GG_21655_c0_g1_i1,blat.proc3825168.chain_379,blat.proc3825168.chain_381,blat.proc3825168.chain_382	6
scaffold_14	starts_in_intron	178396	178396	-	asmbl_12788	none	blat.proc3825156.chain_1508	1	STRG.16708.1,STRG.16708.3,blat.proc3825156.chain_1509	3
scaffold_85	alt_acceptor	1320	1321	-	asmbl_53706	none	blat.proc3825162.chain_3290,blat.proc3825174.chain_491	2	STRG.30130.1,STRG.30130.2,Trinity_GG_28028_c0_g1_i2,blat.proc3825162.chain_3289,blat.proc3825174.chain_490	5
scaffold_9	spliced_intron	11795862	11796216	-	asmbl_55303,asmbl_55304,asmbl_55309	none	STRG.11496.3,STRG.11496.4,blat.proc3825152.chain_3686	3	Trinity_GG_6326_c1_g1_i1,blat.proc3825152.chain_3687	2
scaffold_2957	ends_in_intron	560	560	-	asmbl_38655	none	Trinity_GG_7522_c0_g1_i2,blat.proc3825154.chain_2004,blat.proc3825164.chain_41	3	STRG.30808.1,blat.proc3825164.chain_42	2
scaffold_10	spliced_intron	4058608	4058815	-	asmbl_4252,asmbl_4256	none	STRG.12246.2,STRG.12246.3,blat.proc3825154.chain_824	3	STRG.12246.6,STRG.12246.7,blat.proc3825154.chain_823	3
scaffold_24	alt_acceptor	2786679	2786680	-	asmbl_32801	none	STRG.26487.2,Trinity_GG_14816_c0_g1_i3,blat.proc3825160.chain_3618	3	STRG.26487.1,blat.proc3825160.chain_3619	2
scaffold_26	alt_donor	3428071	3428072	-	asmbl_35491	none	STRG.28021.2,blat.proc3825162.chain_1260	2	STRG.28021.1,blat.proc3825162.chain_1259	2
scaffold_22	alternate_exon	10701912	10702028	+	asmbl_30363	none	STRG.25410.2,Trinity_GG_31356_c0_g1_i1,blat.proc3825176.chain_2439	3	STRG.25410.1,blat.proc3825176.chain_2440	2
scaffold_20	spliced_intron	5927643	5928282	-	asmbl_25796	none	STRG.23198.1,blat.proc3825160.chain_284	2	STRG.23198.2,Trinity_GG_12942_c0_g1_i3,Trinity_GG_12942_c0_g1_i4,blat.proc3825160.chain_282,blat.proc3825160.chain_283,blat.proc3825160.chain_285	6
scaffold_8	ends_in_intron	9921796	9921796	-	asmbl_52073	none	blat.proc3825152.chain_2453	1	STRG.10244.1,STRG.10244.2	2
scaffold_16	starts_in_intron	1479137	1479137	+	asmbl_16079	none	Trinity_GG_27775_c0_g1_i1,blat.proc3825172.chain_3743	2	STRG.19090.2	1
scaffold_11	alt_donor	13683113	13683114	+	asmbl_6072	none	STRG.14225.2	1	STRG.14225.1,blat.proc3825170.chain_2767	2
scaffold_3	alt_donor	4882494	4882495	-	asmbl_38821	none	STRG.3181.2	1	STRG.3181.1,blat.proc3825148.chain_2959	2
scaffold_6	spliced_intron	13575827	13577850	-	asmbl_48916	none	STRG.8098.3	1	STRG.8098.2,Trinity_GG_4614_c1_g1_i1	2
scaffold_9	alternate_exon	12113586	12114833	+	asmbl_54409,asmbl_54410,asmbl_54411,asmbl_54412,asmbl_54414	none	STRG.11537.1,STRG.11537.2,blat.proc3825170.chain_366,blat.proc3825170.chain_367,blat.proc3825170.chain_368,blat.proc3825170.chain_369	6	STRG.11537.3	1
scaffold_12	retained_intron	9506497	9506614	+	asmbl_7866	none	blat.proc3825170.chain_3433	1	STRG.14931.1,blat.proc3825170.chain_3432	2
scaffold_7	retained_intron	18615578	18615841	-	asmbl_51487,asmbl_51488,asmbl_51489,asmbl_51490	none	STRG.9681.1,STRG.9681.2,STRG.9681.4,STRG.9681.5	4	STRG.9681.3,blat.proc3825152.chain_2027,blat.proc3825152.chain_2028,blat.proc3825152.chain_2029	4
scaffold_15	ends_in_intron	15158596	15158596	+	asmbl_15717,asmbl_15718	none	blat.proc3825172.chain_3436,blat.proc3825172.chain_3438	2	STRG.18906.5	1
scaffold_24	starts_in_intron	997880	997880	-	asmbl_32711	none	Trinity_GG_14719_c0_g1_i1	1	STRG.26373.1,STRG.26373.2,Trinity_GG_14719_c0_g1_i2,blat.proc3825160.chain_3459	4
scaffold_11	spliced_intron	11639424	11639532	+	asmbl_5980,asmbl_5982,asmbl_5983,asmbl_5984,asmbl_5986,asmbl_5987,asmbl_5988	none	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2634,blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2639,blat.proc3825170.chain_2640	8	blat.proc3825170.chain_2638	1
scaffold_23	retained_intron	4449754	4449915	-	asmbl_30868,asmbl_30869	none	STRG.25862.2,Trinity_GG_14447_c0_g1_i4,blat.proc3825160.chain_3003	3	STRG.25862.4,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3004	3
scaffold_1	starts_in_intron	3254981	3254981	+	asmbl_1581	none	STRG.205.2,blat.proc3825164.chain_319	2	STRG.205.1,blat.proc3825164.chain_320,blat.proc3825164.chain_322	3
scaffold_8	starts_in_intron	17493958	17493958	+	asmbl_53488	none	blat.proc3825168.chain_3155	1	STRG.10682.1,STRG.10682.2,STRG.10682.3,STRG.10682.4,Trinity_GG_23212_c0_g2_i1,blat.proc3825168.chain_3150,blat.proc3825168.chain_3151,blat.proc3825168.chain_3152,blat.proc3825168.chain_3153,blat.proc3825168.chain_3156	10
scaffold_9	alt_donor	570764	570765	+	asmbl_53774	none	STRG.10788.2	1	STRG.10788.1,STRG.10788.3	2
scaffold_12	starts_in_intron	3963795	3963795	+	asmbl_7579	none	blat.proc3825170.chain_3158	1	STRG.14590.1,blat.proc3825170.chain_3159	2
scaffold_13	spliced_intron	8683729	8683824	+	asmbl_11138	none	STRG.16135.2,Trinity_GG_26178_c0_g1_i1	2	STRG.16135.1,Trinity_GG_26178_c0_g1_i2,blat.proc3825172.chain_903	3
scaffold_28	alt_acceptor	3742821	3742822	-	asmbl_38161,asmbl_38162,asmbl_38165,asmbl_38166	none	STRG.29587.1,STRG.29587.2,blat.proc3825162.chain_2734,blat.proc3825162.chain_2739	4	STRG.29587.3,STRG.29587.4,blat.proc3825162.chain_2735	3
scaffold_10	ends_in_intron	3793933	3793933	-	asmbl_4230	none	Trinity_GG_6819_c0_g1_i1,blat.proc3825154.chain_779	2	STRG.12212.1,STRG.12212.3,blat.proc3825154.chain_782	3
scaffold_14	spliced_intron	8589819	8590023	+	asmbl_12254	none	STRG.17293.1,blat.proc3825172.chain_2009	2	STRG.17293.2,blat.proc3825172.chain_2008	2
scaffold_531	alternate_exon	1763	1835	-	asmbl_46543	none	STRG.30367.2	1	STRG.30367.1	1
scaffold_7	starts_in_intron	3954301	3954301	-	asmbl_50831	none	blat.proc3825152.chain_1234	1	STRG.8794.1,STRG.8794.2,blat.proc3825152.chain_1228,blat.proc3825152.chain_1229,blat.proc3825152.chain_1230,blat.proc3825152.chain_1232,blat.proc3825152.chain_1235	7
scaffold_23	retained_intron	4312110	4313057	+	asmbl_31497	none	blat.proc3825176.chain_2776	1	blat.proc3825176.chain_2773	1
scaffold_26	retained_intron	1322177	1322196	-	asmbl_35402	none	blat.proc3825162.chain_1237	1	STRG.27913.1	1
scaffold_8	starts_in_intron	5856782	5856782	+	asmbl_52913	none	Trinity_GG_22886_c1_g1_i1,blat.proc3825168.chain_2576	2	STRG.10001.1,STRG.10001.2,STRG.10001.3,STRG.10001.4,Trinity_GG_22886_c0_g1_i1,Trinity_GG_22886_c0_g1_i2,Trinity_GG_22886_c0_g1_i3,Trinity_GG_22886_c0_g1_i4,Trinity_GG_22886_c0_g1_i5,blat.proc3825168.chain_2571,blat.proc3825168.chain_2572,blat.proc3825168.chain_2573,blat.proc3825168.chain_2574,blat.proc3825168.chain_2575	14
scaffold_27	starts_in_intron	1947593	1947593	+	asmbl_36044	none	Trinity_GG_33148_c1_g1_i3,blat.proc3825178.chain_1747	2	STRG.28676.1,blat.proc3825178.chain_1748	2
scaffold_19	alt_acceptor	3189545	3189546	-	asmbl_22093,asmbl_22094	none	STRG.22011.4,blat.proc3825158.chain_2845	2	STRG.22011.1,STRG.22011.3,blat.proc3825158.chain_2843,blat.proc3825158.chain_2844	4
scaffold_25	starts_in_intron	5782272	5782272	+	asmbl_33583	none	blat.proc3825178.chain_587	1	STRG.27472.1,STRG.27472.2,STRG.27472.3,blat.proc3825178.chain_583	4
scaffold_7	retained_intron	13204588	13204713	+	asmbl_50315	none	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1974	2	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1973,blat.proc3825168.chain_1975	4
scaffold_26	alt_acceptor	1322067	1322068	-	asmbl_35399	none	blat.proc3825162.chain_1239	1	STRG.27913.2,STRG.27913.3	2
scaffold_12	ends_in_intron	11977225	11977225	+	asmbl_7968	none	blat.proc3825170.chain_3556	1	STRG.15109.1,blat.proc3825170.chain_3555	2
scaffold_20	ends_in_intron	7475142	7475142	-	asmbl_25906	none	Trinity_GG_13038_c0_g1_i4,blat.proc3825160.chain_464	2	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_461,blat.proc3825160.chain_462,blat.proc3825160.chain_465,blat.proc3825160.chain_466,blat.proc3825160.chain_467	7
scaffold_9	alt_donor	12112957	12112958	+	asmbl_54411,asmbl_54413	none	STRG.11537.3,blat.proc3825170.chain_369	2	blat.proc3825170.chain_368	1
scaffold_22	retained_exon	7802612	7802713	-	asmbl_29426	none	STRG.25134.1,blat.proc3825160.chain_2302	2	blat.proc3825160.chain_2301	1
scaffold_4	retained_intron	19141911	19141983	+	asmbl_42126	none	blat.proc3825166.chain_1786	1	STRG.5502.1,blat.proc3825166.chain_1785	2
scaffold_24	alternate_exon	10484870	10484958	+	asmbl_32574	none	Trinity_GG_32229_c1_g1_i4,blat.proc3825178.chain_198	2	STRG.27019.1,STRG.27019.2,Trinity_GG_32229_c1_g1_i2,Trinity_GG_32229_c1_g1_i3,Trinity_GG_32229_c1_g1_i8,blat.proc3825178.chain_199,blat.proc3825178.chain_201,blat.proc3825178.chain_203	8
scaffold_1	skipped_exon	3678408	3680406	+	asmbl_1629	none	STRG.242.3	1	STRG.242.1,STRG.242.2,blat.proc3825164.chain_366,blat.proc3825164.chain_367,blat.proc3825164.chain_368	5
scaffold_25	alt_acceptor	800995	800996	-	asmbl_34001,asmbl_34002,asmbl_34004	none	STRG.27136.1,STRG.27136.3,STRG.27136.4,blat.proc3825162.chain_511	4	blat.proc3825162.chain_509	1
scaffold_26	spliced_intron	9044430	9044639	+	asmbl_35200,asmbl_35204	none	STRG.28471.1,STRG.28471.2,Trinity_GG_33066_c0_g1_i3,blat.proc3825178.chain_1595	4	Trinity_GG_33066_c0_g1_i2,blat.proc3825178.chain_1594	2
scaffold_7	alt_donor	13575743	13575744	+	asmbl_50363	none	STRG.9460.2,Trinity_GG_22572_c0_g1_i2,blat.proc3825168.chain_1991	3	STRG.9460.1,Trinity_GG_22572_c0_g1_i1,blat.proc3825168.chain_1990	3
scaffold_11	alternate_exon	4334218	4334365	-	asmbl_6596,asmbl_6598,asmbl_6600	none	STRG.13525.1,STRG.13525.2,blat.proc3825154.chain_2133,blat.proc3825154.chain_2135	4	blat.proc3825154.chain_2136,blat.proc3825154.chain_2137	2
scaffold_1	skipped_exon	11911574	11912158	+	asmbl_2165	none	Trinity_GG_17818_c0_g1_i1,blat.proc3825164.chain_979	2	Trinity_GG_17818_c0_g1_i2,blat.proc3825164.chain_980	2
scaffold_18	retained_intron	2779711	2779799	-	asmbl_19741	none	STRG.21139.2,blat.proc3825158.chain_2031	2	STRG.21139.1,blat.proc3825158.chain_2032	2
scaffold_28	starts_in_intron	5398168	5398168	-	asmbl_38291	none	blat.proc3825162.chain_2882	1	STRG.29689.1,Trinity_GG_16654_c0_g1_i4,blat.proc3825162.chain_2881	3
scaffold_1	spliced_intron	20347167	20348278	+	asmbl_2621	none	STRG.1396.5	1	STRG.1396.2,STRG.1396.3,Trinity_GG_18153_c0_g1_i4,blat.proc3825164.chain_1584,blat.proc3825164.chain_1586	5
scaffold_6	alternate_exon	18688854	18688926	+	asmbl_47843	none	STRG.8537.2	1	STRG.8537.1,Trinity_GG_22011_c0_g1_i1,blat.proc3825168.chain_1009	3
scaffold_19	starts_in_intron	12430966	12430966	+	asmbl_21800	none	Trinity_GG_29795_c2_g1_i1,blat.proc3825174.chain_3599	2	STRG.22571.1,blat.proc3825174.chain_3594,blat.proc3825174.chain_3596,blat.proc3825174.chain_3597,blat.proc3825174.chain_3598	5
scaffold_2135	starts_in_intron	1171	1171	+	asmbl_29046	none	Trinity_GG_34269_c0_g1_i3,blat.proc3825178.chain_3659	2	STRG.30714.1,blat.proc3825160.chain_1688	2
scaffold_1	alt_acceptor	5748836	5748837	+	asmbl_1786	none	STRG.378.3,blat.proc3825164.chain_513	2	STRG.378.1,STRG.378.2,blat.proc3825164.chain_516	3
scaffold_2	alt_acceptor	9862344	9862345	-	asmbl_23395	none	STRG.2188.1,blat.proc3825148.chain_2216	2	STRG.2188.3	1
scaffold_22	spliced_intron	26600	26679	+	asmbl_29798,asmbl_29799	none	STRG.24662.1,Trinity_GG_30926_c0_g1_i2,Trinity_GG_30926_c0_g1_i4,blat.proc3825176.chain_1755,blat.proc3825176.chain_1756	5	STRG.24662.2,Trinity_GG_30926_c0_g1_i1,blat.proc3825176.chain_1754	3
scaffold_21	alternate_exon	5254066	5254124	-	asmbl_27629	none	STRG.24058.2	1	STRG.24058.1,blat.proc3825160.chain_1206	2
scaffold_9	alt_donor	2400440	2400441	-	asmbl_54869	none	STRG.10884.2	1	STRG.10884.1	1
scaffold_28	retained_exon	4558738	4558973	-	asmbl_38214	none	STRG.29633.1	1	STRG.29633.2,blat.proc3825162.chain_2812	2
scaffold_3	alt_donor	18937808	18937809	+	asmbl_40750	none	STRG.4067.4	1	STRG.4067.1,STRG.4067.2,STRG.4067.3	3
scaffold_7	alt_acceptor	8827377	8827378	-	asmbl_51040	none	STRG.9121.2	1	STRG.9121.1,blat.proc3825152.chain_1493	2
scaffold_21	alt_acceptor	3973263	3973264	-	asmbl_27557	none	STRG.23981.1,blat.proc3825160.chain_1121	2	STRG.23981.2	1
scaffold_10	retained_intron	10324675	10324702	-	asmbl_4724	none	STRG.12724.1	1	blat.proc3825154.chain_1293	1
scaffold_10	retained_intron	5535601	5535697	-	asmbl_4370	none	Trinity_GG_6906_c0_g1_i2,blat.proc3825154.chain_928	2	blat.proc3825154.chain_929	1
scaffold_12	starts_in_intron	16439770	16439770	+	asmbl_8188	none	STRG.15407.3	1	STRG.15407.1,STRG.15407.2,blat.proc3825172.chain_120	3
scaffold_5	retained_exon	10145887	10145990	-	asmbl_44315	none	STRG.6314.1,blat.proc3825150.chain_2507,blat.proc3825150.chain_2508	3	STRG.6314.2	1
scaffold_19	skipped_exon	9096219	9098178	+	asmbl_21570	none	STRG.22353.1,blat.proc3825174.chain_3338	2	STRG.22353.2	1
scaffold_8	alt_acceptor	3219225	3219226	+	asmbl_52747	none	STRG.9833.4,Trinity_GG_22786_c1_g1_i2,blat.proc3825168.chain_2377	3	STRG.9833.2	1
scaffold_18	retained_exon	824500	824550	+	asmbl_20329	none	blat.proc3825174.chain_1871	1	STRG.21008.1,STRG.21008.3,blat.proc3825174.chain_1872	3
scaffold_18	spliced_intron	1895347	1896928	-	asmbl_19660	none	blat.proc3825158.chain_2011,blat.proc3825158.chain_2017	2	STRG.21081.10,STRG.21081.3,STRG.21081.8,STRG.21081.9,blat.proc3825158.chain_2010,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2018	10
scaffold_14	retained_intron	1070202	1070398	+	asmbl_11789,asmbl_11793,asmbl_11795,asmbl_11796,asmbl_11798	none	STRG.16766.3,Trinity_GG_26535_c0_g1_i1,blat.proc3825172.chain_1533,blat.proc3825172.chain_1535,blat.proc3825172.chain_1537,blat.proc3825172.chain_1538	6	STRG.16766.4	1
scaffold_6	alt_donor	13167933	13167934	-	asmbl_48887,asmbl_48888	none	blat.proc3825152.chain_470,blat.proc3825152.chain_471	2	STRG.8074.1,blat.proc3825152.chain_472,blat.proc3825152.chain_478	3
scaffold_2	spliced_intron	14190516	14191409	-	asmbl_23564,asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23569,asmbl_23570	none	STRG.2416.1,STRG.2416.2,STRG.2416.3,Trinity_GG_1338_c0_g1_i8,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2416	7	Trinity_GG_1338_c0_g1_i3,blat.proc3825148.chain_2412,blat.proc3825148.chain_2415	3
scaffold_14	skipped_exon	8215090	8216517	-	asmbl_13251,asmbl_13255,asmbl_13256	none	STRG.17234.1,blat.proc3825156.chain_2056,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059	4	STRG.17234.2,blat.proc3825156.chain_2055,blat.proc3825156.chain_2060	3
scaffold_27	spliced_intron	512494	512580	-	asmbl_36696,asmbl_36698	none	STRG.28572.2,STRG.28572.3	2	STRG.28572.1,blat.proc3825162.chain_1809	2
scaffold_9	alt_acceptor	6396897	6396898	-	asmbl_55053	none	STRG.11174.1,blat.proc3825152.chain_3362	2	STRG.11174.2	1
scaffold_4	retained_intron	5651946	5652054	-	asmbl_42619,asmbl_42623,asmbl_42624,asmbl_42628	none	STRG.4472.3,blat.proc3825150.chain_658,blat.proc3825150.chain_663,blat.proc3825150.chain_664	4	STRG.4472.1,STRG.4472.2,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_662,blat.proc3825150.chain_665,blat.proc3825150.chain_666,blat.proc3825150.chain_667,blat.proc3825150.chain_668	10
scaffold_6	spliced_intron	14379745	14379856	+	asmbl_47601	none	blat.proc3825168.chain_690	1	STRG.8196.1,Trinity_GG_21822_c0_g1_i2,blat.proc3825168.chain_689	3
scaffold_24	starts_in_intron	8126902	8126902	+	asmbl_32414	none	Trinity_GG_32156_c0_g1_i2,blat.proc3825178.chain_56	2	blat.proc3825178.chain_54,blat.proc3825178.chain_55	2
scaffold_10	retained_intron	13471231	13471345	-	asmbl_4884,asmbl_4888	none	STRG.12943.1,Trinity_GG_7233_c0_g2_i3,blat.proc3825154.chain_1533,blat.proc3825154.chain_1535	4	STRG.12943.2,STRG.12943.3,STRG.12943.4,blat.proc3825154.chain_1532,blat.proc3825154.chain_1534	5
scaffold_25	starts_in_intron	4876323	4876323	+	asmbl_33540	none	STRG.27423.3,Trinity_GG_32416_c0_g2_i1,blat.proc3825178.chain_499	3	STRG.27423.1,STRG.27423.2,Trinity_GG_32416_c0_g2_i3,blat.proc3825178.chain_501	4
scaffold_6	starts_in_intron	11501448	11501448	+	asmbl_47338	none	Trinity_GG_21639_c0_g3_i2,blat.proc3825168.chain_339	2	STRG.7947.1,Trinity_GG_21639_c0_g3_i1,blat.proc3825168.chain_338,blat.proc3825168.chain_340	4
scaffold_5	spliced_intron	16519221	16519444	-	asmbl_44749,asmbl_44752	none	STRG.6842.2,STRG.6842.4,blat.proc3825150.chain_3015	3	Trinity_GG_3836_c0_g2_i1,blat.proc3825150.chain_3018	2
scaffold_24	retained_intron	6297525	6297691	+	asmbl_32301	none	STRG.26687.3,Trinity_GG_32069_c0_g1_i3,blat.proc3825176.chain_3642	3	STRG.26687.2,Trinity_GG_32069_c0_g1_i2,blat.proc3825176.chain_3643	3
scaffold_6	spliced_intron	13964868	13965021	+	asmbl_47554,asmbl_47555	none	STRG.8150.1,STRG.8150.2,blat.proc3825168.chain_625	3	blat.proc3825168.chain_626	1
scaffold_9	retained_intron	16563697	16563787	-	asmbl_55580	none	STRG.11806.6	1	STRG.11806.1,STRG.11806.2,STRG.11806.3,STRG.11806.4,STRG.11806.5,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_273,blat.proc3825154.chain_274	12
scaffold_28	retained_intron	5735192	5735278	-	asmbl_38319	none	Trinity_GG_16644_c0_g1_i2,blat.proc3825162.chain_2868	2	STRG.29709.1,Trinity_GG_16644_c0_g1_i1,blat.proc3825162.chain_2869	3
scaffold_16	retained_exon	1779585	1779628	+	asmbl_16087	none	STRG.19102.1,blat.proc3825174.chain_22	2	STRG.19102.3,blat.proc3825174.chain_21	2
scaffold_24	ends_in_intron	7172773	7172773	-	asmbl_33017,asmbl_33018	none	blat.proc3825162.chain_74,blat.proc3825162.chain_76	2	STRG.26767.1,STRG.26767.2	2
scaffold_5	alt_acceptor	6927578	6927579	+	asmbl_45461	none	STRG.6105.1,blat.proc3825166.chain_2330	2	STRG.6105.2	1
scaffold_7	retained_intron	1034813	1034848	+	asmbl_49575	none	Trinity_GG_22050_c0_g1_i1	1	STRG.8621.1	1
scaffold_27	starts_in_intron	4763649	4763649	-	asmbl_36966	none	blat.proc3825162.chain_2095	1	STRG.28915.1,STRG.28915.2,blat.proc3825162.chain_2094	3
scaffold_11	alt_donor	5139607	5139608	+	asmbl_5545	none	STRG.13601.2,Trinity_GG_24752_c0_g1_i1,blat.proc3825170.chain_2071	3	STRG.13601.1,Trinity_GG_24752_c0_g1_i2,blat.proc3825170.chain_2070	3
scaffold_14	starts_in_intron	9191148	9191148	+	asmbl_12273	none	STRG.17321.2,blat.proc3825172.chain_2084	2	STRG.17321.1,blat.proc3825172.chain_2085	2
scaffold_27	skipped_exon	2814303	2815090	+	asmbl_36118,asmbl_36119,asmbl_36122	none	STRG.28763.1,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1925	5	STRG.28763.2,Trinity_GG_33230_c1_g1_i2,blat.proc3825178.chain_1927	3
scaffold_4	starts_in_intron	10956234	10956234	+	asmbl_41691	none	blat.proc3825166.chain_1242	1	STRG.4821.1,STRG.4821.2,blat.proc3825166.chain_1241,blat.proc3825166.chain_1243,blat.proc3825166.chain_1244	5
scaffold_13	spliced_intron	8353056	8353594	+	asmbl_11125,asmbl_11132	none	STRG.16130.1,STRG.16130.2,blat.proc3825172.chain_915	3	blat.proc3825172.chain_917	1
scaffold_23	retained_intron	5864511	5864677	+	asmbl_31607	none	Trinity_GG_31616_c0_g1_i3,blat.proc3825176.chain_2868	2	STRG.25972.1,blat.proc3825176.chain_2869	2
scaffold_3	starts_in_intron	16344959	16344959	-	asmbl_39498	none	blat.proc3825150.chain_117	1	STRG.3910.1,blat.proc3825150.chain_114,blat.proc3825150.chain_115	3
scaffold_12	retained_exon	9667999	9668104	+	asmbl_7867,asmbl_7869	none	STRG.14944.2,Trinity_GG_25536_c0_g1_i1,Trinity_GG_25536_c0_g1_i3,blat.proc3825170.chain_3434,blat.proc3825170.chain_3436	5	STRG.14944.1	1
scaffold_17	skipped_exon	13087139	13087807	+	asmbl_19317	none	STRG.20805.1,blat.proc3825174.chain_1695	2	STRG.20805.2,blat.proc3825174.chain_1694,blat.proc3825174.chain_1696	3
scaffold_11	alt_acceptor	6591193	6591194	-	asmbl_6724,asmbl_6725	none	STRG.13705.1,blat.proc3825154.chain_2268,blat.proc3825154.chain_2269	3	STRG.13705.2	1
scaffold_24	retained_intron	6445291	6445510	+	asmbl_32309	none	Trinity_GG_32056_c0_g1_i14,blat.proc3825176.chain_3611,blat.proc3825176.chain_3616	3	blat.proc3825176.chain_3620	1
scaffold_6	retained_intron	11482302	11482747	+	asmbl_47327	none	STRG.7943.2,blat.proc3825168.chain_309	2	STRG.7943.4	1
scaffold_2	spliced_intron	15266613	15266717	+	asmbl_25002,asmbl_25006	none	STRG.2485.3,blat.proc3825164.chain_2606	2	STRG.2485.1,STRG.2485.2,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608	9
scaffold_2	starts_in_intron	6675525	6675525	-	asmbl_23219	none	STRG.2027.2,Trinity_GG_1126_c0_g1_i3,blat.proc3825148.chain_2029	3	STRG.2027.1,STRG.2027.3,Trinity_GG_1126_c0_g1_i2,Trinity_GG_1126_c0_g1_i5,blat.proc3825148.chain_2027,blat.proc3825148.chain_2028	6
scaffold_17	alternate_exon	13171915	13173795	-	asmbl_18355	none	STRG.20809.1,blat.proc3825158.chain_1812	2	Trinity_GG_11692_c0_g1_i1,blat.proc3825158.chain_1811	2
scaffold_17	starts_in_intron	7851888	7851888	-	asmbl_18061	none	blat.proc3825158.chain_1455	1	STRG.20412.1,blat.proc3825158.chain_1454	2
scaffold_23	alt_acceptor	1606078	1606079	+	asmbl_31347	none	blat.proc3825176.chain_2615	1	STRG.25640.1,blat.proc3825176.chain_2613,blat.proc3825176.chain_2614	3
scaffold_6	retained_intron	11668222	11669586	+	asmbl_47356	none	Trinity_GG_21670_c0_g1_i1,blat.proc3825168.chain_406	2	STRG.7960.1,Trinity_GG_21670_c0_g1_i2,blat.proc3825168.chain_405	3
scaffold_1	spliced_intron	11662174	11662307	+	asmbl_2124	none	STRG.777.1	1	blat.proc3825164.chain_815	1
scaffold_24	alternate_exon	3437213	3437485	-	asmbl_32833	none	STRG.26548.4	1	STRG.26548.3,blat.proc3825160.chain_3622	2
scaffold_8	starts_in_intron	4750316	4750316	-	asmbl_51792	none	Trinity_GG_5538_c0_g1_i3,blat.proc3825152.chain_2189	2	STRG.9932.1,Trinity_GG_5538_c0_g1_i1,Trinity_GG_5538_c0_g1_i2,blat.proc3825152.chain_2187,blat.proc3825152.chain_2188	5
scaffold_19	retained_exon	12392290	12392819	-	asmbl_22478,asmbl_22479,asmbl_22481,asmbl_22482	none	STRG.22570.1,STRG.22570.2,blat.proc3825158.chain_3326,blat.proc3825158.chain_3328,blat.proc3825158.chain_3329,blat.proc3825158.chain_3330	6	STRG.22570.3,blat.proc3825158.chain_3327	2
scaffold_9	ends_in_intron	13303441	13303441	-	asmbl_55427,asmbl_55428	none	blat.proc3825154.chain_70,blat.proc3825154.chain_72	2	STRG.11631.1	1
scaffold_21	alt_acceptor	10499252	10499253	-	asmbl_28052,asmbl_28054	none	STRG.24523.1,STRG.24523.2,blat.proc3825160.chain_1734	3	STRG.24523.3	1
scaffold_25	spliced_intron	4811129	4811361	+	asmbl_33530,asmbl_33531,asmbl_33533,asmbl_33534	none	STRG.27415.1,STRG.27415.2,Trinity_GG_32429_c0_g1_i2,Trinity_GG_32429_c0_g1_i4,Trinity_GG_32429_c0_g1_i5,blat.proc3825178.chain_523,blat.proc3825178.chain_525,blat.proc3825178.chain_526,blat.proc3825178.chain_527	9	Trinity_GG_32429_c0_g1_i1,blat.proc3825178.chain_524	2
scaffold_10	spliced_intron	2675286	2675371	+	asmbl_2994	none	STRG.12083.4	1	STRG.12083.1,STRG.12083.2,STRG.12083.3,blat.proc3825170.chain_832	4
scaffold_8	alt_donor	9401258	9401259	+	asmbl_53077	none	STRG.10204.2,Trinity_GG_22984_c0_g1_i2,blat.proc3825168.chain_2757	3	STRG.10204.1,Trinity_GG_22984_c0_g1_i1,blat.proc3825168.chain_2758	3
scaffold_17	alternate_exon	788052	788272	+	asmbl_18576	none	STRG.19934.2	1	STRG.19934.1	1
scaffold_17	skipped_exon	8611499	8614310	+	asmbl_19006,asmbl_19007	none	STRG.20473.1,blat.proc3825174.chain_1336	2	STRG.20473.3,STRG.20473.4,STRG.20473.5,blat.proc3825174.chain_1334,blat.proc3825174.chain_1335,blat.proc3825174.chain_1337,blat.proc3825174.chain_1338,blat.proc3825174.chain_1339	8
scaffold_17	starts_in_intron	11037575	11037575	-	asmbl_18261	none	blat.proc3825158.chain_1652	1	STRG.20664.4,STRG.20664.5,STRG.20664.6,STRG.20664.7,blat.proc3825158.chain_1650,blat.proc3825158.chain_1651,blat.proc3825158.chain_1653	7
scaffold_14	alt_acceptor	6771278	6771279	-	asmbl_13158,asmbl_13159	none	STRG.17120.2,blat.proc3825156.chain_1933	2	STRG.17120.1,blat.proc3825156.chain_1932,blat.proc3825156.chain_1934	3
scaffold_28	ends_in_intron	7495808	7495808	+	asmbl_37687	none	blat.proc3825178.chain_3004	1	STRG.29829.1,STRG.29829.2,blat.proc3825178.chain_3002,blat.proc3825178.chain_3003	4
scaffold_3	alt_donor	12943170	12943171	-	asmbl_39240,asmbl_39243	none	STRG.3672.1,STRG.3672.3,Trinity_GG_2010_c0_g1_i1,blat.proc3825148.chain_3544	4	STRG.3672.2,Trinity_GG_2010_c0_g1_i2,blat.proc3825148.chain_3545	3
scaffold_18	spliced_intron	6425925	6426952	+	asmbl_20675	none	STRG.21370.1,Trinity_GG_29108_c0_g1_i2,blat.proc3825174.chain_2391	3	STRG.21370.2,Trinity_GG_29108_c0_g1_i1,blat.proc3825174.chain_2390	3
scaffold_17	starts_in_intron	12059966	12059966	-	asmbl_18311	none	blat.proc3825158.chain_1758	1	STRG.20732.1,Trinity_GG_11662_c0_g1_i2,blat.proc3825158.chain_1757	3
scaffold_2	starts_in_intron	33073	33073	+	asmbl_24068	none	Trinity_GG_18174_c0_g1_i9	1	STRG.1496.1,STRG.1496.3,STRG.1496.4,STRG.1496.5,blat.proc3825164.chain_1639,blat.proc3825164.chain_1645	6
scaffold_1	alternate_exon	6818050	6818618	-	asmbl_378	none	STRG.472.1	1	blat.proc3825148.chain_461	1
scaffold_3	alternate_exon	10277685	10279075	+	asmbl_40248,asmbl_40251	none	STRG.3467.2,Trinity_GG_19271_c1_g1_i1,Trinity_GG_1998_c0_g1_i1,blat.proc3825148.chain_3527,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733,blat.proc3825164.chain_3737	7	STRG.3467.3,Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3727,blat.proc3825164.chain_3730,blat.proc3825164.chain_3732,blat.proc3825164.chain_3736	6
scaffold_25	retained_intron	979268	979402	+	asmbl_33360	none	Trinity_GG_32255_c2_g1_i1,blat.proc3825178.chain_252	2	blat.proc3825178.chain_251	1
scaffold_1	spliced_intron	16923881	16923994	-	asmbl_1021	none	STRG.1196.3	1	STRG.1196.2	1
scaffold_14	starts_in_intron	11566671	11566671	+	asmbl_12391	none	Trinity_GG_26926_c0_g1_i2,blat.proc3825172.chain_2220	2	STRG.17493.1,blat.proc3825172.chain_2219	2
scaffold_13	spliced_intron	88373	88517	+	asmbl_10458,asmbl_10459	none	STRG.15429.1,STRG.15429.2,blat.proc3825172.chain_142	3	blat.proc3825172.chain_143	1
scaffold_17	starts_in_intron	8808960	8808960	-	asmbl_18119	none	blat.proc3825158.chain_1442	1	STRG.20490.1,STRG.20490.2,blat.proc3825158.chain_1440,blat.proc3825158.chain_1441	4
scaffold_22	alternate_exon	4345833	4345964	+	asmbl_29981	none	STRG.24852.3,blat.proc3825176.chain_1949	2	STRG.24852.1,blat.proc3825176.chain_1948	2
scaffold_20	alternate_exon	5944508	5944806	-	asmbl_25799	none	STRG.23202.1,blat.proc3825160.chain_220	2	blat.proc3825160.chain_221	1
scaffold_9	ends_in_intron	878977	878977	-	asmbl_54813	none	Trinity_GG_6013_c0_g1_i1,blat.proc3825152.chain_3082	2	Trinity_GG_6013_c0_g2_i2,blat.proc3825152.chain_3083	2
scaffold_18	retained_intron	1886374	1887352	-	asmbl_19659	none	STRG.21081.6	1	STRG.21081.3,STRG.21081.7,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2014	5
scaffold_22	starts_in_intron	4210040	4210040	-	asmbl_29207	none	blat.proc3825160.chain_2026	1	Trinity_GG_13887_c0_g1_i2,blat.proc3825160.chain_2025	2
scaffold_28	alt_donor	2933043	2933044	-	asmbl_38111	none	STRG.29489.1	1	STRG.29489.2	1
scaffold_14	spliced_intron	8007646	8007816	+	asmbl_12187,asmbl_12189	none	STRG.17217.3,Trinity_GG_26787_c0_g1_i2,blat.proc3825172.chain_1984	3	Trinity_GG_26787_c0_g1_i6,blat.proc3825172.chain_1985	2
scaffold_5	spliced_intron	10195272	10195388	-	asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44324,asmbl_44326	none	STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531	6	STRG.6323.1,blat.proc3825150.chain_2532,blat.proc3825150.chain_2533	3
scaffold_21	alt_donor	7461604	7461605	-	asmbl_27820	none	STRG.24277.1	1	STRG.24277.2,blat.proc3825160.chain_1356	2
scaffold_10	spliced_intron	2787464	2787760	-	asmbl_4131	none	STRG.12105.1,Trinity_GG_6692_c0_g1_i1,Trinity_GG_6692_c0_g1_i6,blat.proc3825154.chain_585,blat.proc3825154.chain_586	5	Trinity_GG_6692_c0_g1_i3,blat.proc3825154.chain_580,blat.proc3825154.chain_581,blat.proc3825154.chain_582,blat.proc3825154.chain_583	5
scaffold_6	retained_intron	16104047	16104276	-	asmbl_49104	none	Trinity_GG_4723_c0_g1_i2	1	blat.proc3825152.chain_725	1
scaffold_1325	spliced_intron	2091	2231	+	asmbl_11712	none	STRG.30586.1	1	STRG.30586.2,STRG.30586.3	2
scaffold_4	retained_intron	19753353	19753666	+	asmbl_42162	none	STRG.5564.2,Trinity_GG_20352_c0_g1_i1,blat.proc3825166.chain_1826	3	STRG.5564.1,STRG.5564.3,Trinity_GG_20352_c0_g1_i3,Trinity_GG_20352_c0_g1_i4,blat.proc3825166.chain_1824,blat.proc3825166.chain_1825	6
scaffold_21	alternate_exon	7727561	7734029	+	asmbl_28764	none	STRG.24316.3,Trinity_GG_30787_c0_g1_i1,blat.proc3825176.chain_1476,blat.proc3825176.chain_1536	4	STRG.24316.2	1
scaffold_5	spliced_intron	5972142	5972548	+	asmbl_45385	none	blat.proc3825166.chain_2242	1	STRG.6011.1	1
scaffold_16	skipped_exon	8639809	8640658	+	asmbl_16429	none	STRG.19492.1,Trinity_GG_27966_c0_g1_i3,blat.proc3825174.chain_366	3	STRG.19492.2,STRG.19492.3,blat.proc3825174.chain_368	3
scaffold_20	alternate_exon	425595	425818	+	asmbl_26351	none	STRG.22745.1	1	STRG.22745.5,blat.proc3825174.chain_3744	2
scaffold_4	spliced_intron	6672886	6673441	-	asmbl_42694,asmbl_42695	none	STRG.4524.1,STRG.4524.3,blat.proc3825150.chain_802,blat.proc3825150.chain_804	4	STRG.4524.2,Trinity_GG_2560_c0_g1_i1,blat.proc3825150.chain_803	3
scaffold_10	starts_in_intron	11911645	11911645	-	asmbl_4797,asmbl_4800	none	blat.proc3825154.chain_1376,blat.proc3825154.chain_1378	2	STRG.12827.1,STRG.12827.2,blat.proc3825154.chain_1375	3
scaffold_6	retained_intron	9909894	9910383	+	asmbl_47250	none	STRG.7832.3,Trinity_GG_21599_c1_g1_i1,blat.proc3825168.chain_259	3	STRG.7832.1	1
scaffold_13	retained_intron	6396106	6396423	+	asmbl_10923,asmbl_10926,asmbl_10928	none	STRG.15929.1,STRG.15929.2,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_654,blat.proc3825172.chain_655	6	STRG.15929.4,Trinity_GG_26055_c0_g1_i1,blat.proc3825172.chain_652	3
scaffold_17	spliced_intron	9531820	9532391	+	asmbl_19102,asmbl_19103,asmbl_19107	none	STRG.20578.1,STRG.20578.2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1403	6	blat.proc3825174.chain_1398,blat.proc3825174.chain_1401	2
scaffold_10	starts_in_intron	14827174	14827174	+	asmbl_3669	none	blat.proc3825170.chain_1574	1	STRG.13026.1,STRG.13026.2,STRG.13026.3,blat.proc3825170.chain_1575	4
scaffold_2	starts_in_intron	15649437	15649437	-	asmbl_23644	none	blat.proc3825148.chain_2483	1	STRG.2518.1,STRG.2518.2,blat.proc3825148.chain_2484	3
scaffold_6	retained_intron	16614134	16614236	+	asmbl_47714	none	blat.proc3825168.chain_797	1	STRG.8389.1,STRG.8389.2,blat.proc3825168.chain_796,blat.proc3825168.chain_798,blat.proc3825168.chain_799	5
scaffold_3	alternate_exon	12034962	12039184	-	asmbl_39199,asmbl_39200	none	STRG.3626.1,STRG.3626.2,blat.proc3825148.chain_3499,blat.proc3825148.chain_3500	4	STRG.3626.3,Trinity_GG_1980_c0_g1_i2,blat.proc3825148.chain_3501	3
scaffold_10	alternate_exon	1176265	1179302	+	asmbl_2914	none	STRG.12009.1,Trinity_GG_23997_c2_g1_i1,Trinity_GG_23997_c3_g1_i1,Trinity_GG_23997_c4_g1_i1,blat.proc3825170.chain_768,blat.proc3825170.chain_773,blat.proc3825170.chain_774,blat.proc3825170.chain_775	8	blat.proc3825170.chain_769	1
scaffold_16	alt_donor	5412587	5412588	+	asmbl_16216	none	STRG.19292.2	1	STRG.19292.1,Trinity_GG_27872_c0_g1_i1,blat.proc3825174.chain_189	3
scaffold_9	alt_acceptor	6405824	6405825	+	asmbl_54091,asmbl_54092,asmbl_54095	none	STRG.11175.2,Trinity_GG_23514_c0_g1_i1,Trinity_GG_23514_c0_g1_i3,blat.proc3825168.chain_3671,blat.proc3825168.chain_3672,blat.proc3825168.chain_3673	6	STRG.11175.1,STRG.11175.3	2
scaffold_22	retained_intron	9537969	9539952	-	asmbl_29544	none	STRG.25286.1,Trinity_GG_14118_c2_g1_i1,Trinity_GG_14118_c3_g1_i1,Trinity_GG_14118_c4_g1_i1,Trinity_GG_14118_c5_g1_i1,blat.proc3825160.chain_2397	6	blat.proc3825160.chain_2393,blat.proc3825160.chain_2394	2
scaffold_6	spliced_intron	7173897	7174059	+	asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47057,asmbl_47058,asmbl_47059	none	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84,blat.proc3825168.chain_85	7	blat.proc3825168.chain_82	1
scaffold_13	alternate_exon	4458512	4458560	+	asmbl_10798	none	Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_512	2	STRG.15770.3,blat.proc3825172.chain_511	2
scaffold_9	alternate_exon	15540143	15540249	+	asmbl_54577	none	STRG.11744.1	1	blat.proc3825170.chain_561	1
scaffold_2	alt_acceptor	9889747	9889748	-	asmbl_23401	none	blat.proc3825148.chain_2165	1	STRG.2192.1,blat.proc3825148.chain_2166,blat.proc3825148.chain_2167	3
scaffold_9	retained_intron	9706825	9707760	+	asmbl_54229	none	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_142	3	Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_146	2
scaffold_16	alternate_exon	7027760	7027799	+	asmbl_16315	none	STRG.19381.2	1	STRG.19381.1	1
scaffold_24	retained_intron	9934311	9934385	+	asmbl_32538	none	blat.proc3825178.chain_99	1	STRG.26966.1,blat.proc3825178.chain_100	2
scaffold_5	retained_intron	18255418	18255824	+	asmbl_46231	none	blat.proc3825166.chain_3195	1	STRG.6961.1,Trinity_GG_21150_c0_g1_i1,Trinity_GG_21150_c0_g1_i4,blat.proc3825166.chain_3197,blat.proc3825166.chain_3198	5
scaffold_27	alt_donor	2694849	2694850	-	asmbl_36846	none	STRG.28746.2	1	STRG.28746.1,blat.proc3825162.chain_2000	2
scaffold_17	alternate_exon	9006970	9007683	+	asmbl_19055,asmbl_19058	none	STRG.20525.1,blat.proc3825174.chain_1320,blat.proc3825174.chain_1322	3	STRG.20525.2,STRG.20525.3,blat.proc3825174.chain_1321	3
scaffold_12	retained_intron	7392698	7392862	-	asmbl_8578	none	blat.proc3825154.chain_3364	1	STRG.14823.1,blat.proc3825154.chain_3363	2
scaffold_12	spliced_intron	3330743	3331370	+	asmbl_7546,asmbl_7549,asmbl_7550	none	STRG.14555.1,STRG.14555.3,STRG.14555.5,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i3,blat.proc3825170.chain_3112	6	Trinity_GG_25356_c0_g1_i4,blat.proc3825170.chain_3111	2
scaffold_5	alt_donor	19031662	19031663	-	asmbl_44886	none	STRG.7022.5	1	STRG.7022.2,STRG.7022.4,Trinity_GG_3910_c0_g1_i11,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133,blat.proc3825150.chain_3135	6
scaffold_2	retained_intron	14276152	14276257	+	asmbl_24898,asmbl_24900,asmbl_24904,asmbl_24905	none	STRG.2428.3,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596	4	STRG.2428.1,blat.proc3825164.chain_2591,blat.proc3825164.chain_2597	3
scaffold_5	alt_acceptor	5846299	5846300	-	asmbl_44062	none	STRG.5999.2	1	STRG.5999.1	1
scaffold_7	alt_acceptor	1162675	1162676	+	asmbl_49577	none	STRG.8630.1,blat.proc3825168.chain_1133	2	STRG.8630.2	1
scaffold_9	alt_acceptor	10974996	10974997	+	asmbl_54320	none	STRG.11407.1,Trinity_GG_23674_c0_g1_i2,blat.proc3825170.chain_245	3	blat.proc3825170.chain_244	1
scaffold_9	alt_donor	9990710	9990711	-	asmbl_55250	none	STRG.11363.1,blat.proc3825152.chain_3538	2	STRG.11363.2,blat.proc3825152.chain_3536	2
scaffold_1	alt_donor	19006302	19006303	+	asmbl_2573,asmbl_2574	none	STRG.1324.2,STRG.1324.3	2	STRG.1324.1	1
scaffold_2	ends_in_intron	4580019	4580019	+	asmbl_24360	none	blat.proc3825164.chain_1979	1	STRG.1886.1,STRG.1886.2,STRG.1886.3,blat.proc3825164.chain_1977,blat.proc3825164.chain_1980	5
scaffold_13	retained_intron	2274573	2274820	-	asmbl_9437,asmbl_9438,asmbl_9445,asmbl_9448,asmbl_9449	none	STRG.15548.3,STRG.15548.4,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395	5	STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_399	3
scaffold_1	skipped_exon	14200941	14202390	+	asmbl_2344,asmbl_2348	none	STRG.1008.1,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1192	5	Trinity_GG_17929_c0_g1_i5,blat.proc3825164.chain_1191	2
scaffold_16	alt_donor	14663229	14663230	-	asmbl_17491	none	STRG.19865.2	1	STRG.19865.1,blat.proc3825158.chain_908	2
scaffold_1	alt_donor	5989931	5989932	+	asmbl_1812	none	STRG.394.1,blat.proc3825164.chain_547	2	STRG.394.2	1
scaffold_10	alt_donor	11833311	11833312	+	asmbl_3497	none	STRG.12819.1,blat.proc3825170.chain_1433	2	STRG.12819.2	1
scaffold_1	alternate_exon	8633041	8633664	-	asmbl_465	none	STRG.571.3	1	STRG.571.1,blat.proc3825148.chain_545	2
scaffold_5	starts_in_intron	1504393	1504393	-	asmbl_43854	none	blat.proc3825166.chain_1958	1	STRG.5708.1,STRG.5708.2,blat.proc3825150.chain_1861,blat.proc3825166.chain_1948	4
scaffold_8	alternate_exon	6851279	6851309	-	asmbl_51893	none	STRG.10046.1,Trinity_GG_5599_c0_g1_i1,blat.proc3825152.chain_2303	3	STRG.10046.2	1
scaffold_9	retained_intron	9644933	9645015	+	asmbl_54214	none	STRG.11334.2	1	STRG.11334.1,Trinity_GG_23627_c0_g1_i1,blat.proc3825170.chain_114	3
scaffold_27	spliced_intron	7449983	7450375	+	asmbl_36453	none	blat.proc3825178.chain_2319	1	STRG.29104.1,Trinity_GG_33436_c1_g1_i2,blat.proc3825178.chain_2318	3
scaffold_8	ends_in_intron	9401449	9401449	+	asmbl_53078	none	blat.proc3825168.chain_2759	1	STRG.10204.1,STRG.10204.2,Trinity_GG_22984_c0_g1_i1,Trinity_GG_22984_c0_g1_i2,blat.proc3825168.chain_2757,blat.proc3825168.chain_2758	6
scaffold_13	starts_in_intron	1220016	1220016	+	asmbl_10543	none	Trinity_GG_25849_c0_g1_i2,blat.proc3825172.chain_280	2	STRG.15493.1,blat.proc3825172.chain_281,blat.proc3825172.chain_282	3
scaffold_8	alt_acceptor	7809947	7809948	+	asmbl_53001	none	STRG.10101.2	1	STRG.10101.1,blat.proc3825168.chain_2674	2
scaffold_18	retained_intron	10447970	10448099	+	asmbl_20924	none	STRG.21646.1,Trinity_GG_29237_c0_g1_i2	2	Trinity_GG_29237_c0_g1_i1,blat.proc3825174.chain_2623	2
scaffold_4	spliced_intron	19604777	19604824	-	asmbl_43470	none	STRG.5550.2	1	STRG.5550.1	1
scaffold_6	alt_donor	7171943	7171944	+	asmbl_47056,asmbl_47057	none	blat.proc3825168.chain_83,blat.proc3825168.chain_84	2	STRG.7628.1,STRG.7628.2,STRG.7628.4	3
scaffold_4	starts_in_intron	1972393	1972393	+	asmbl_41150	none	Trinity_GG_19631_c0_g1_i4	1	STRG.4211.1,STRG.4211.2,Trinity_GG_19631_c0_g1_i1,Trinity_GG_19631_c0_g1_i3,blat.proc3825166.chain_619,blat.proc3825166.chain_620,blat.proc3825166.chain_621	7
scaffold_26	spliced_intron	4679112	4679225	-	asmbl_35583	none	STRG.28192.1	1	STRG.28192.2	1
scaffold_2	retained_intron	4578467	4578717	+	asmbl_24358	none	STRG.1886.1,Trinity_GG_18341_c1_g1_i3,blat.proc3825164.chain_1978	3	STRG.1886.3	1
scaffold_1	starts_in_intron	5964343	5964343	+	asmbl_1810	none	Trinity_GG_17575_c0_g1_i1,blat.proc3825164.chain_543	2	STRG.400.1,STRG.400.2,STRG.400.3,blat.proc3825164.chain_540	4
scaffold_6	alt_acceptor	6921772	6921773	-	asmbl_48470	none	STRG.7597.3,blat.proc3825152.chain_6	2	STRG.7597.1,STRG.7597.2,blat.proc3825152.chain_5	3
scaffold_25	alt_acceptor	7927786	7927787	+	asmbl_33694,asmbl_33695	none	STRG.27621.1,STRG.27621.3,Trinity_GG_32493_c0_g1_i1,Trinity_GG_32493_c0_g1_i2,blat.proc3825178.chain_643,blat.proc3825178.chain_644	6	STRG.27621.2	1
scaffold_13	ends_in_intron	5710134	5710134	-	asmbl_9712	none	blat.proc3825156.chain_730	1	STRG.15881.1,STRG.15881.2,STRG.15881.3,blat.proc3825156.chain_726,blat.proc3825156.chain_731,blat.proc3825156.chain_732	6
scaffold_7	retained_intron	11851032	11851796	+	asmbl_50192	none	STRG.9305.2,Trinity_GG_22470_c0_g1_i1,blat.proc3825168.chain_1813,blat.proc3825168.chain_1814	4	STRG.9305.1,blat.proc3825168.chain_1812	2
scaffold_4	alt_donor	4827214	4827215	+	asmbl_41307	none	STRG.4374.1,Trinity_GG_19746_c0_g1_i1,blat.proc3825166.chain_834	3	STRG.4374.2	1
scaffold_2	retained_exon	6761484	6761550	-	asmbl_23230,asmbl_23231,asmbl_23232	none	STRG.2029.1,STRG.2029.2,STRG.2029.3,blat.proc3825148.chain_2011,blat.proc3825148.chain_2012,blat.proc3825148.chain_2013	6	STRG.2029.4	1
scaffold_13	spliced_intron	2270688	2270802	-	asmbl_9437,asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9	STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_400	9
scaffold_3	starts_in_intron	10825184	10825184	-	asmbl_39114	none	Trinity_GG_1901_c0_g1_i2,blat.proc3825148.chain_3392	2	STRG.3517.1	1
scaffold_11	retained_intron	10981902	10982289	-	asmbl_7008	none	STRG.14062.1,Trinity_GG_7857_c0_g1_i1,blat.proc3825154.chain_2608	3	STRG.14062.3	1
scaffold_6	skipped_exon	2925434	2927522	-	asmbl_48197	none	STRG.7297.4	1	STRG.7297.1,STRG.7297.2,blat.proc3825150.chain_3331,blat.proc3825150.chain_3332	4
scaffold_18	starts_in_intron	4444971	4444971	+	asmbl_20521	none	blat.proc3825174.chain_2152	1	STRG.21236.1,STRG.21236.2,blat.proc3825174.chain_2151,blat.proc3825174.chain_2153	4
scaffold_18	retained_exon	8866099	8866113	-	asmbl_20030,asmbl_20031,asmbl_20033	none	blat.proc3825158.chain_2358,blat.proc3825158.chain_2360,blat.proc3825158.chain_2361	3	STRG.21549.2,blat.proc3825158.chain_2354,blat.proc3825158.chain_2355,blat.proc3825158.chain_2359,blat.proc3825158.chain_2362	5
scaffold_16	alt_acceptor	433622	433623	-	asmbl_16871,asmbl_16876,asmbl_16880	none	STRG.19041.1,blat.proc3825158.chain_196,blat.proc3825158.chain_203	3	blat.proc3825158.chain_200	1
scaffold_7	retained_intron	18392948	18393030	-	asmbl_51478	none	Trinity_GG_5439_c0_g1_i9,blat.proc3825152.chain_2019	2	STRG.9670.7,Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2017,blat.proc3825152.chain_2021	5
scaffold_16	retained_intron	8875480	8875517	-	asmbl_17260	none	STRG.19506.1,blat.proc3825158.chain_640	2	STRG.19506.2	1
scaffold_3	alt_donor	15745413	15745414	-	asmbl_39439,asmbl_39442	none	STRG.3851.3,blat.proc3825148.chain_3706	2	STRG.3851.1,STRG.3851.2,blat.proc3825148.chain_3707	3
scaffold_15	skipped_exon	15188079	15189128	+	asmbl_15728,asmbl_15732,asmbl_15736,asmbl_15739,asmbl_15741,asmbl_15742	none	STRG.18910.1,blat.proc3825172.chain_3520,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3529,blat.proc3825172.chain_3532,blat.proc3825172.chain_3535	7	STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3536	5
scaffold_23	alt_donor	6912267	6912268	-	asmbl_30991	none	STRG.26021.1,blat.proc3825160.chain_3178	2	STRG.26021.2,STRG.26021.3,blat.proc3825160.chain_3180	3
scaffold_16	alternate_exon	4066673	4073315	+	asmbl_16165,asmbl_16168	none	STRG.19224.1,Trinity_GG_27836_c0_g1_i4,blat.proc3825174.chain_115,blat.proc3825174.chain_117	4	STRG.19224.2,blat.proc3825174.chain_116	2
scaffold_9	skipped_exon	15221769	15223286	-	asmbl_55511	none	STRG.11725.1,blat.proc3825154.chain_191	2	STRG.11725.2,STRG.11725.3,blat.proc3825154.chain_190	3
scaffold_1	retained_intron	14411093	14411191	-	asmbl_914	none	blat.proc3825148.chain_1061	1	STRG.1039.1,blat.proc3825148.chain_1062	2
scaffold_3	spliced_intron	6049629	6049714	-	asmbl_38879,asmbl_38880,asmbl_38882,asmbl_38883,asmbl_38889	none	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.6,Trinity_GG_1752_c0_g1_i1,blat.proc3825148.chain_3087,blat.proc3825148.chain_3088	7	STRG.3259.7	1
scaffold_1611	retained_intron	1827	1982	+	asmbl_17601	none	Trinity_GG_34236_c0_g1_i2	1	STRG.30634.1,blat.proc3825178.chain_3620	2
scaffold_11	spliced_intron	8192814	8192980	-	asmbl_6851	none	STRG.13829.1,Trinity_GG_7742_c0_g1_i3,blat.proc3825154.chain_2395	3	Trinity_GG_7742_c0_g1_i2,blat.proc3825154.chain_2393	2
scaffold_8	spliced_intron	14130033	14130103	+	asmbl_53359	none	STRG.10518.1,blat.proc3825168.chain_3066	2	STRG.10518.2	1
scaffold_5	starts_in_intron	19028610	19028610	-	asmbl_44894	none	blat.proc3825150.chain_3130	1	STRG.7022.1,STRG.7022.2,STRG.7022.3,STRG.7022.4,STRG.7022.5,blat.proc3825150.chain_3131,blat.proc3825150.chain_3132,blat.proc3825150.chain_3133,blat.proc3825150.chain_3134	9
scaffold_4	retained_intron	7090983	7091175	+	asmbl_41459	none	STRG.4547.1	1	STRG.4547.2,STRG.4547.4	2
scaffold_7	alt_acceptor	12346576	12346577	+	asmbl_50245	none	STRG.9328.1,blat.proc3825168.chain_1858	2	STRG.9328.2	1
scaffold_7	alt_donor	17313640	17313641	+	asmbl_50478,asmbl_50480	none	STRG.9607.1,STRG.9607.2,blat.proc3825168.chain_2128	3	STRG.9607.3	1
scaffold_13	starts_in_intron	7189711	7189711	-	asmbl_9857	none	STRG.16015.1,blat.proc3825156.chain_922	2	STRG.16015.2,blat.proc3825156.chain_921	2
scaffold_7	spliced_intron	12363591	12363962	-	asmbl_51198,asmbl_51200	none	STRG.9334.1,Trinity_GG_5256_c0_g1_i2,Trinity_GG_5256_c0_g1_i3,blat.proc3825152.chain_1708,blat.proc3825152.chain_1709	5	STRG.9334.2,blat.proc3825152.chain_1706,blat.proc3825152.chain_1710	3
scaffold_27	starts_in_intron	6932126	6932126	+	asmbl_36422	none	blat.proc3825178.chain_2265	1	STRG.29058.1,blat.proc3825178.chain_2266	2
scaffold_26	starts_in_intron	3942198	3942198	-	asmbl_35513	none	STRG.28082.3	1	STRG.28082.2,blat.proc3825162.chain_1375	2
scaffold_7	alternate_exon	11246482	11246638	+	asmbl_50163	none	STRG.9274.3,Trinity_GG_22459_c0_g1_i2,blat.proc3825168.chain_1778	3	STRG.9274.1,STRG.9274.2,blat.proc3825168.chain_1777	3
scaffold_6	retained_intron	19111383	19111555	+	asmbl_47876	none	STRG.8584.2,Trinity_GG_22000_c0_g1_i2,blat.proc3825168.chain_989	3	STRG.8584.1,STRG.8584.3,Trinity_GG_22000_c0_g1_i3,blat.proc3825168.chain_988	4
scaffold_13	skipped_exon	15100579	15102303	+	asmbl_11485	none	STRG.16559.1,blat.proc3825172.chain_1352	2	blat.proc3825172.chain_1351	1
scaffold_2	alt_acceptor	3708372	3708373	+	asmbl_24304	none	STRG.1800.3	1	STRG.1800.1	1
scaffold_20	retained_intron	8002938	8003022	-	asmbl_25950	none	STRG.23349.1,Trinity_GG_13017_c0_g1_i2,blat.proc3825160.chain_428	3	STRG.23349.2	1
scaffold_18	retained_intron	7631535	7631646	-	asmbl_19961,asmbl_19965	none	STRG.21463.1,blat.proc3825158.chain_2394,blat.proc3825158.chain_2397	3	STRG.21463.3	1
scaffold_22	retained_intron	11544135	11544174	+	asmbl_30407,asmbl_30408	none	STRG.25505.2,STRG.25505.3	2	blat.proc3825176.chain_2435	1
scaffold_5	alt_acceptor	981743	981744	-	asmbl_43803	none	STRG.5647.2	1	STRG.5647.1,blat.proc3825150.chain_1873	2
scaffold_6	alt_donor	8010926	8010927	-	asmbl_48524	none	STRG.7680.1,blat.proc3825152.chain_21	2	STRG.7680.2,blat.proc3825152.chain_20	2
scaffold_8	spliced_intron	5554249	5554404	-	asmbl_51836,asmbl_51837	none	STRG.9976.1,blat.proc3825152.chain_2232,blat.proc3825152.chain_2235	3	blat.proc3825152.chain_2233,blat.proc3825152.chain_2236	2
scaffold_20	spliced_intron	10468860	10469189	-	asmbl_26102,asmbl_26103	none	STRG.23584.1,blat.proc3825160.chain_639,blat.proc3825160.chain_640	3	STRG.23584.2,blat.proc3825160.chain_637	2
scaffold_26	skipped_exon	9843220	9843548	+	asmbl_35282,asmbl_35286,asmbl_35287	none	STRG.28546.1,blat.proc3825178.chain_1577,blat.proc3825178.chain_1579	3	STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1575,blat.proc3825178.chain_1576,blat.proc3825178.chain_1578,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	10
scaffold_12	alternate_exon	16316174	16316314	-	asmbl_9118,asmbl_9121	none	STRG.15386.1,blat.proc3825156.chain_241	2	blat.proc3825156.chain_240	1
scaffold_17	retained_intron	14627703	14627832	-	asmbl_18436,asmbl_18438	none	STRG.20931.4,blat.proc3825158.chain_1899	2	STRG.20931.1,blat.proc3825158.chain_1902	2
scaffold_1	alternate_exon	20133630	20134894	-	asmbl_1172	none	STRG.1386.1,Trinity_GG_758_c0_g1_i1	2	STRG.1386.7	1
scaffold_11	alternate_exon	4673294	4690785	-	asmbl_6610,asmbl_6611	none	STRG.13564.2,STRG.13564.4,blat.proc3825154.chain_2144,blat.proc3825154.chain_2147,blat.proc3825154.chain_2157	5	Trinity_GG_7606_c0_g2_i2,blat.proc3825154.chain_2156	2
scaffold_8	spliced_intron	8901322	8902097	-	asmbl_51981	none	STRG.10146.1,blat.proc3825152.chain_2432	2	STRG.10146.2,blat.proc3825152.chain_2431	2
scaffold_14	ends_in_intron	2299083	2299083	+	asmbl_11855	none	STRG.16845.3,blat.proc3825172.chain_1547	2	STRG.16845.1,STRG.16845.2	2
scaffold_17	starts_in_intron	9530310	9530310	+	asmbl_19105	none	STRG.20578.3,blat.proc3825174.chain_1397	2	STRG.20578.1,STRG.20578.2,Trinity_GG_28562_c0_g1_i2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,Trinity_GG_28562_c0_g1_i8,blat.proc3825174.chain_1395,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1399,blat.proc3825174.chain_1400,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	13
scaffold_9	skipped_exon	644688	645850	+	asmbl_53782	none	STRG.10793.3	1	STRG.10793.1,STRG.10793.2,STRG.10793.4,blat.proc3825168.chain_3345	4
scaffold_8	starts_in_intron	6371561	6371561	-	asmbl_51883	none	blat.proc3825152.chain_2301	1	STRG.10040.1,blat.proc3825152.chain_2302	2
scaffold_4	alternate_exon	13723243	13723421	-	asmbl_43002	none	blat.proc3825150.chain_1108	1	STRG.4994.2,blat.proc3825150.chain_1110	2
scaffold_5	retained_exon	993797	993872	+	asmbl_45107,asmbl_45108	none	STRG.5651.2,blat.proc3825166.chain_1830,blat.proc3825166.chain_1831	3	STRG.5651.1	1
scaffold_23	spliced_intron	6291131	6291893	-	asmbl_30968,asmbl_30971,asmbl_30973,asmbl_30974	none	STRG.25975.1,STRG.25975.3,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192	7	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190,blat.proc3825160.chain_3193	9
scaffold_26	alt_donor	665243	665244	-	asmbl_35387	none	STRG.27861.2	1	STRG.27861.1	1
scaffold_1	alt_acceptor	13925533	13925534	-	asmbl_860	none	STRG.1000.3,blat.proc3825148.chain_1010	2	STRG.1000.1,STRG.1000.2	2
scaffold_15	alt_acceptor	5628136	5628137	-	asmbl_14229	none	STRG.18252.2	1	STRG.18252.1,Trinity_GG_10271_c0_g1_i1,Trinity_GG_10271_c0_g1_i2,blat.proc3825156.chain_3100,blat.proc3825156.chain_3101	5
scaffold_10	spliced_intron	3065795	3065893	-	asmbl_4156,asmbl_4160	none	STRG.12130.3,blat.proc3825154.chain_665,blat.proc3825154.chain_667	3	STRG.12130.2,blat.proc3825154.chain_662,blat.proc3825154.chain_663,blat.proc3825154.chain_666	4
scaffold_6	ends_in_intron	8521001	8521001	+	asmbl_47142	none	blat.proc3825168.chain_161	1	STRG.7733.1,blat.proc3825168.chain_160,blat.proc3825168.chain_162	3
scaffold_3	starts_in_intron	5154849	5154849	-	asmbl_38838	none	blat.proc3825148.chain_3083	1	STRG.3215.1	1
scaffold_13	alternate_exon	8801991	8809210	-	asmbl_9984	none	blat.proc3825156.chain_1067	1	STRG.16153.5,blat.proc3825156.chain_1068	2
scaffold_17	starts_in_intron	1290010	1290010	-	asmbl_17681	none	Trinity_GG_11179_c0_g1_i6,blat.proc3825158.chain_971	2	STRG.19964.1,STRG.19964.2,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_972,blat.proc3825158.chain_973,blat.proc3825158.chain_975,blat.proc3825158.chain_976	8
scaffold_22	alt_acceptor	728475	728476	+	asmbl_29884	none	STRG.24725.1,Trinity_GG_30978_c0_g1_i1,blat.proc3825176.chain_1844	3	STRG.24725.2	1
scaffold_24	skipped_exon	5939637	5940483	+	asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32263,asmbl_32267,asmbl_32268,asmbl_32271,asmbl_32272,asmbl_32273,asmbl_32274,asmbl_32275,asmbl_32276	none	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3669,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	14	blat.proc3825176.chain_3666	1
scaffold_8	spliced_intron	16397415	16398401	-	asmbl_52392	none	blat.proc3825152.chain_2851	1	STRG.10626.1,STRG.10626.2,blat.proc3825152.chain_2845,blat.proc3825152.chain_2848,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	6
scaffold_21	retained_intron	706527	706986	-	asmbl_27354,asmbl_27355	none	STRG.23759.2,blat.proc3825160.chain_794	2	STRG.23759.1,blat.proc3825160.chain_796	2
scaffold_18	alt_acceptor	6810968	6810969	+	asmbl_20682,asmbl_20684	none	STRG.21392.1,STRG.21392.4	2	STRG.21392.2	1
scaffold_2	alt_acceptor	18341917	18341918	+	asmbl_25224	none	STRG.2715.2	1	STRG.2715.3	1
scaffold_15	starts_in_intron	15447870	15447870	+	asmbl_15789	none	Trinity_GG_27706_c0_g1_i7,blat.proc3825172.chain_3622	2	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i4,Trinity_GG_27706_c0_g1_i5,blat.proc3825172.chain_3619,blat.proc3825172.chain_3620,blat.proc3825172.chain_3624,blat.proc3825172.chain_3626	9
scaffold_26	retained_intron	5646059	5646185	-	asmbl_35608,asmbl_35609,asmbl_35610	none	STRG.28272.1,STRG.28272.2,STRG.28272.3,Trinity_GG_15826_c2_g1_i1,blat.proc3825162.chain_1516	5	blat.proc3825162.chain_1514	1
scaffold_4	alternate_exon	16804027	16804247	-	asmbl_43217	none	blat.proc3825150.chain_1430	1	Trinity_GG_2936_c0_g1_i1,blat.proc3825150.chain_1429	2
scaffold_22	retained_exon	224571	224609	-	asmbl_29075,asmbl_29076,asmbl_29081,asmbl_29082	none	STRG.24683.1,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1905,blat.proc3825160.chain_1908	5	STRG.24683.5	1
scaffold_2	retained_intron	16403504	16403585	+	asmbl_25138	none	blat.proc3825164.chain_2870	1	STRG.2582.1,blat.proc3825164.chain_2872	2
scaffold_2	alt_acceptor	7042365	7042366	+	asmbl_24522,asmbl_24524	none	STRG.2044.1,Trinity_GG_18468_c0_g1_i1,blat.proc3825164.chain_2194	3	Trinity_GG_18468_c0_g1_i2,Trinity_GG_18468_c0_g1_i3,Trinity_GG_18468_c0_g1_i5,blat.proc3825164.chain_2192,blat.proc3825164.chain_2193,blat.proc3825164.chain_2195	6
scaffold_24	starts_in_intron	7173691	7173691	-	asmbl_33018	none	blat.proc3825162.chain_76	1	STRG.26767.1,STRG.26767.2,blat.proc3825162.chain_74	3
scaffold_9	spliced_intron	6400017	6400100	+	asmbl_54092,asmbl_54093	none	STRG.11175.1,Trinity_GG_23514_c0_g1_i1,blat.proc3825168.chain_3672	3	STRG.11175.2,STRG.11175.3,Trinity_GG_23514_c0_g1_i3,blat.proc3825168.chain_3671	4
scaffold_8	alt_acceptor	16386864	16386865	+	asmbl_53450,asmbl_53455,asmbl_53456	none	STRG.10620.3,STRG.10620.4,Trinity_GG_23226_c0_g1_i3,blat.proc3825168.chain_3195	4	STRG.10620.1,STRG.10620.2,Trinity_GG_23226_c0_g1_i2,Trinity_GG_23226_c0_g1_i4,Trinity_GG_23226_c0_g1_i6,blat.proc3825168.chain_3193,blat.proc3825168.chain_3196,blat.proc3825168.chain_3197	8
scaffold_2	spliced_intron	15267438	15267758	+	asmbl_24999,asmbl_25000	none	blat.proc3825164.chain_2603,blat.proc3825164.chain_2604	2	Trinity_GG_18659_c3_g1_i1,blat.proc3825164.chain_2624	2
scaffold_16	alt_acceptor	4046856	4046857	-	asmbl_17043	none	STRG.19219.1	1	STRG.19219.2	1
scaffold_6	alt_donor	4538371	4538372	-	asmbl_48336	none	STRG.7434.1,Trinity_GG_4189_c1_g2_i1	2	STRG.7434.3	1
scaffold_5	skipped_exon	10170961	10171274	+	asmbl_45665	none	blat.proc3825166.chain_2511	1	STRG.6320.1,blat.proc3825166.chain_2512	2
scaffold_15	retained_intron	12000050	12000403	-	asmbl_14550,asmbl_14551,asmbl_14552	none	STRG.18639.2,STRG.18639.4,blat.proc3825156.chain_3533	3	STRG.18639.1,STRG.18639.3,Trinity_GG_10485_c0_g1_i2,Trinity_GG_10485_c0_g1_i3,Trinity_GG_10485_c0_g1_i4,blat.proc3825156.chain_3531,blat.proc3825156.chain_3532,blat.proc3825156.chain_3534	8
scaffold_1	alt_acceptor	13882915	13882916	-	asmbl_852,asmbl_853,asmbl_855,asmbl_857	none	STRG.996.1,STRG.996.2,STRG.996.3,blat.proc3825148.chain_1004,blat.proc3825148.chain_1005,blat.proc3825148.chain_1006	6	STRG.996.4,blat.proc3825148.chain_1003	2
scaffold_1	spliced_intron	9515894	9516390	-	asmbl_538	none	STRG.637.4,Trinity_GG_338_c0_g1_i2,blat.proc3825148.chain_629	3	STRG.637.2,blat.proc3825148.chain_627	2
scaffold_9	alt_acceptor	17851391	17851392	+	asmbl_54654	none	Trinity_GG_23881_c0_g1_i10,blat.proc3825170.chain_573	2	STRG.11873.2,Trinity_GG_23881_c0_g1_i5,blat.proc3825170.chain_570	3
scaffold_5	spliced_intron	14731114	14731222	-	asmbl_44614,asmbl_44617	none	STRG.6676.1,blat.proc3825150.chain_2844,blat.proc3825150.chain_2845	3	Trinity_GG_3740_c0_g1_i4,blat.proc3825150.chain_2847	2
scaffold_8	spliced_intron	12626109	12626425	-	asmbl_52212,asmbl_52213	none	STRG.10437.1,blat.proc3825152.chain_2673,blat.proc3825152.chain_2674	3	blat.proc3825152.chain_2675,blat.proc3825152.chain_2676	2
scaffold_6	alternate_exon	14513104	14513154	-	asmbl_49013	none	STRG.8219.2	1	STRG.8219.1,blat.proc3825152.chain_633	2
scaffold_8	retained_intron	4859675	4859836	-	asmbl_51814	none	blat.proc3825152.chain_2241	1	STRG.9948.1,Trinity_GG_5566_c0_g1_i2,blat.proc3825152.chain_2240	3
scaffold_18	retained_intron	2050891	2050940	-	asmbl_19691	none	Trinity_GG_11827_c1_g1_i2,blat.proc3825158.chain_2075	2	STRG.21094.2	1
scaffold_3	ends_in_intron	14776352	14776352	-	asmbl_39422	none	Trinity_GG_2123_c0_g1_i1,blat.proc3825150.chain_34	2	STRG.3822.1,STRG.3822.2,Trinity_GG_2123_c0_g1_i4,blat.proc3825150.chain_33,blat.proc3825150.chain_35,blat.proc3825150.chain_36	6
scaffold_4	alt_donor	13412113	13412114	-	asmbl_42996	none	STRG.4970.2	1	STRG.4970.1,blat.proc3825150.chain_1106	2
scaffold_18	spliced_intron	3213856	3213934	+	asmbl_20449	none	STRG.21160.1,blat.proc3825174.chain_2091	2	Trinity_GG_28951_c0_g1_i1,blat.proc3825174.chain_2092	2
scaffold_11	retained_intron	8716691	8716938	-	asmbl_6870	none	blat.proc3825154.chain_2439,blat.proc3825154.chain_2441	2	STRG.13902.1,blat.proc3825154.chain_2437	2
scaffold_1	retained_intron	12953678	12953756	-	asmbl_784,asmbl_785	none	STRG.923.1,STRG.923.2,blat.proc3825148.chain_897,blat.proc3825148.chain_899	4	STRG.923.3,blat.proc3825148.chain_898	2
scaffold_10	ends_in_intron	11878669	11878669	-	asmbl_4795	none	Trinity_GG_7166_c1_g1_i1,blat.proc3825154.chain_1414	2	STRG.12826.1,STRG.12826.2,blat.proc3825154.chain_1412	3
scaffold_9	retained_intron	17743454	17743546	+	asmbl_54644	none	Trinity_GG_23880_c0_g1_i6,blat.proc3825170.chain_569	2	STRG.11863.1,STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_563,blat.proc3825170.chain_564,blat.proc3825170.chain_565,blat.proc3825170.chain_566,blat.proc3825170.chain_567	8
scaffold_70	alt_donor	8092	8093	-	asmbl_51599	none	blat.proc3825178.chain_3226	1	STRG.30108.1,STRG.30108.2,Trinity_GG_16893_c0_g1_i1,blat.proc3825162.chain_3271,blat.proc3825162.chain_3272	5
scaffold_10	ends_in_intron	208313	208313	-	asmbl_3922	none	Trinity_GG_6621_c0_g1_i1,blat.proc3825154.chain_433	2	STRG.11913.1,STRG.11913.2,blat.proc3825154.chain_430,blat.proc3825154.chain_431,blat.proc3825154.chain_432	5
scaffold_1	alt_donor	12327527	12327528	+	asmbl_2198	none	STRG.846.3	1	STRG.846.1,blat.proc3825164.chain_1017	2
scaffold_21	retained_intron	10965131	10965246	+	asmbl_28901	none	Trinity_GG_30885_c0_g1_i2,blat.proc3825176.chain_1685	2	STRG.24574.1,STRG.24574.3,Trinity_GG_30885_c0_g1_i3,Trinity_GG_30885_c0_g1_i4,blat.proc3825176.chain_1687,blat.proc3825176.chain_1688	6
scaffold_14	retained_exon	15584767	15585898	+	asmbl_12632	none	STRG.17811.1	1	STRG.17811.7	1
scaffold_21	alt_donor	8231065	8231066	-	asmbl_27904	none	STRG.24361.1,blat.proc3825160.chain_1526	2	STRG.24361.2	1
scaffold_23	spliced_intron	3573591	3574929	+	asmbl_31442	none	STRG.25778.1,blat.proc3825176.chain_2650	2	blat.proc3825176.chain_2649,blat.proc3825176.chain_2652	2
scaffold_4	alternate_exon	5579500	5579556	-	asmbl_42612	none	STRG.4456.2,blat.proc3825150.chain_705	2	STRG.4456.1,blat.proc3825150.chain_706	2
scaffold_2	spliced_intron	16414057	16414370	-	asmbl_23688,asmbl_23690,asmbl_23691,asmbl_23693	none	STRG.2587.1,blat.proc3825148.chain_2556,blat.proc3825148.chain_2558,blat.proc3825148.chain_2559,blat.proc3825148.chain_2560	5	STRG.2587.3,blat.proc3825148.chain_2557	2
scaffold_7	retained_intron	129533	129658	-	asmbl_50664	none	STRG.8595.2	1	STRG.8595.5	1
scaffold_18	spliced_intron	5988273	5988742	+	asmbl_20641,asmbl_20642	none	blat.proc3825174.chain_2288,blat.proc3825174.chain_2289,blat.proc3825174.chain_2290,blat.proc3825174.chain_2293	4	blat.proc3825174.chain_2286,blat.proc3825174.chain_2291,blat.proc3825174.chain_2292	3
scaffold_11	alt_donor	4745153	4745154	-	asmbl_6623	none	STRG.13567.1,blat.proc3825154.chain_2165	2	STRG.13567.2,blat.proc3825154.chain_2162,blat.proc3825154.chain_2163,blat.proc3825154.chain_2166,blat.proc3825154.chain_2167	5
scaffold_3	alt_acceptor	7722269	7722270	-	asmbl_38985	none	STRG.3364.2,blat.proc3825148.chain_3171	2	STRG.3364.1	1
scaffold_4	retained_intron	19128360	19128385	+	asmbl_42124	none	STRG.5496.1	1	STRG.5496.2,blat.proc3825166.chain_1777	2
scaffold_21	alt_acceptor	4593910	4593911	+	asmbl_28527	none	STRG.24013.3,blat.proc3825176.chain_1210	2	STRG.24013.2	1
scaffold_1	alt_acceptor	849971	849972	+	asmbl_1419	none	STRG.42.1,Trinity_GG_17343_c0_g1_i2,blat.proc3825164.chain_125	3	STRG.42.5,Trinity_GG_17343_c0_g1_i1,blat.proc3825164.chain_126	3
scaffold_20	alt_acceptor	11574013	11574014	-	asmbl_26161	none	STRG.23664.4	1	STRG.23664.1,STRG.23664.2,STRG.23664.3,blat.proc3825160.chain_730,blat.proc3825160.chain_731	5
scaffold_2	ends_in_intron	690794	690794	+	asmbl_24098	none	blat.proc3825164.chain_1690	1	STRG.1547.2	1
scaffold_11	alt_donor	8601307	8601308	+	asmbl_5809	none	Trinity_GG_24974_c0_g1_i3,blat.proc3825170.chain_2448	2	STRG.13876.3	1
scaffold_3	alternate_exon	3248163	3264843	+	asmbl_39939	none	STRG.3072.2	1	STRG.3072.3,Trinity_GG_19083_c1_g1_i21,blat.proc3825164.chain_3392	3
scaffold_18	alt_acceptor	12935437	12935438	+	asmbl_20982	none	STRG.21740.3	1	STRG.21740.1,STRG.21740.2	2
scaffold_28	retained_intron	226675	226779	-	asmbl_37902	none	STRG.29247.3	1	STRG.29247.1,STRG.29247.2	2
scaffold_2	retained_exon	3632499	3632648	+	asmbl_24291,asmbl_24294	none	STRG.1787.1,blat.proc3825164.chain_1919	2	STRG.1787.2	1
scaffold_2727	retained_intron	835	963	-	asmbl_37237	none	STRG.30784.2	1	STRG.30784.1	1
scaffold_17	starts_in_intron	8837337	8837337	-	asmbl_18125	none	STRG.20492.1	1	blat.proc3825158.chain_1524	1
scaffold_10	spliced_intron	714718	715006	-	asmbl_3987,asmbl_3988,asmbl_3989,asmbl_3992	none	STRG.11957.1,STRG.11957.3,STRG.11957.4,STRG.11957.5	4	STRG.11957.2,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541,blat.proc3825154.chain_545	4
scaffold_27	retained_exon	1986906	1986978	+	asmbl_36059,asmbl_36061	none	STRG.28684.1,Trinity_GG_33184_c1_g1_i2	2	STRG.28684.2	1
scaffold_8	spliced_intron	11848560	11849714	+	asmbl_53278,asmbl_53282,asmbl_53284	none	STRG.10390.3,blat.proc3825168.chain_3016,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022	4	STRG.10390.2,STRG.10390.4,STRG.10390.5,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	5
scaffold_15	skipped_exon	13812383	13814430	-	asmbl_14673	none	STRG.18816.1,Trinity_GG_10543_c0_g1_i1,Trinity_GG_10543_c0_g1_i2,blat.proc3825156.chain_3624,blat.proc3825156.chain_3625	5	STRG.18816.2	1
scaffold_21	spliced_intron	5537513	5537636	-	asmbl_27675,asmbl_27676	none	STRG.24086.1,blat.proc3825160.chain_1275	2	STRG.24086.2,blat.proc3825160.chain_1271,blat.proc3825160.chain_1277	3
scaffold_5	alternate_exon	13115549	13115643	-	asmbl_44518	none	STRG.6549.2,blat.proc3825150.chain_2726	2	STRG.6549.1,blat.proc3825150.chain_2727	2
scaffold_6	alt_acceptor	10182611	10182612	-	asmbl_48673	none	STRG.7858.2,Trinity_GG_4441_c0_g1_i2	2	STRG.7858.1,Trinity_GG_4441_c0_g1_i3,Trinity_GG_4441_c0_g1_i4,blat.proc3825152.chain_233,blat.proc3825152.chain_234,blat.proc3825152.chain_235	6
scaffold_2	alternate_exon	889047	889459	+	asmbl_24134	none	STRG.1565.5	1	blat.proc3825164.chain_1714	1
scaffold_11	spliced_intron	17084164	17084320	-	asmbl_7248,asmbl_7251,asmbl_7252	none	STRG.14373.2,STRG.14373.3,blat.proc3825154.chain_2882	3	STRG.14373.1,STRG.14373.4,Trinity_GG_8018_c0_g1_i2,blat.proc3825154.chain_2883,blat.proc3825154.chain_2884,blat.proc3825154.chain_2885,blat.proc3825154.chain_2886	7
scaffold_20	alternate_exon	9946420	9948617	+	asmbl_26912	none	STRG.23538.1,blat.proc3825176.chain_704	2	STRG.23538.2,blat.proc3825176.chain_705	2
scaffold_12	alt_acceptor	14174309	14174310	+	asmbl_8068	none	blat.proc3825172.chain_2	1	STRG.15252.3,blat.proc3825172.chain_4	2
scaffold_18	retained_intron	7867750	7867862	+	asmbl_20798,asmbl_20803,asmbl_20806,asmbl_20807	none	STRG.21488.4,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i11,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2453	7	STRG.21488.1,STRG.21488.2,Trinity_GG_29146_c0_g1_i18,blat.proc3825174.chain_2452,blat.proc3825174.chain_2456,blat.proc3825174.chain_2458,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	8
scaffold_23	spliced_intron	2647054	2647286	+	asmbl_31416	none	STRG.25734.1,blat.proc3825176.chain_2708	2	blat.proc3825176.chain_2707	1
scaffold_10	starts_in_intron	14693864	14693864	+	asmbl_3650	none	Trinity_GG_24450_c0_g1_i1,blat.proc3825170.chain_1570	2	STRG.13014.1,STRG.13014.2,STRG.13014.3,blat.proc3825170.chain_1571	4
scaffold_1	spliced_intron	5746244	5746355	-	asmbl_299	none	STRG.375.1,blat.proc3825148.chain_348	2	blat.proc3825148.chain_349	1
scaffold_20	spliced_intron	631243	631334	-	asmbl_25501	none	STRG.22765.3,blat.proc3825158.chain_3609	2	blat.proc3825158.chain_3611	1
scaffold_6	retained_intron	10724279	10724368	+	asmbl_47289	none	STRG.7892.3,blat.proc3825168.chain_335	2	STRG.7892.1,STRG.7892.2,blat.proc3825168.chain_333,blat.proc3825168.chain_334	4
scaffold_17	alt_acceptor	5726616	5726617	-	asmbl_17955	none	STRG.20273.3	1	STRG.20273.1,blat.proc3825158.chain_1321	2
scaffold_1	ends_in_intron	1620351	1620351	+	asmbl_1502	none	blat.proc3825164.chain_168	1	STRG.113.1,Trinity_GG_17360_c0_g1_i2,Trinity_GG_17360_c0_g1_i5,blat.proc3825164.chain_165,blat.proc3825164.chain_167	5
scaffold_1	alt_acceptor	7290420	7290421	+	asmbl_1897	none	STRG.520.1,Trinity_GG_17630_c0_g1_i5,blat.proc3825164.chain_639	3	STRG.520.2	1
scaffold_28	starts_in_intron	5230887	5230887	-	asmbl_38264	none	STRG.29674.2	1	STRG.29674.1,blat.proc3825162.chain_2843,blat.proc3825162.chain_2846	3
scaffold_15	ends_in_intron	5725	5725	-	asmbl_13904	none	Trinity_GG_10034_c1_g1_i1,blat.proc3825156.chain_2673	2	STRG.17862.1,blat.proc3825156.chain_2672	2
scaffold_25	starts_in_intron	6325464	6325464	-	asmbl_34359,asmbl_34360	none	blat.proc3825162.chain_938,blat.proc3825162.chain_940	2	STRG.27519.1,STRG.27519.2,Trinity_GG_15459_c0_g2_i1,blat.proc3825162.chain_939,blat.proc3825162.chain_941,blat.proc3825162.chain_942,blat.proc3825162.chain_943,blat.proc3825162.chain_944	8
scaffold_7	starts_in_intron	732489	732489	-	asmbl_50699	none	STRG.8609.2	1	STRG.8609.1,STRG.8609.3,Trinity_GG_4925_c0_g1_i5,blat.proc3825152.chain_1077,blat.proc3825152.chain_1079	5
scaffold_14	alt_acceptor	7508157	7508158	-	asmbl_13215,asmbl_13217,asmbl_13218	none	STRG.17196.1,blat.proc3825156.chain_1996,blat.proc3825156.chain_1998,blat.proc3825156.chain_1999	4	STRG.17196.3,blat.proc3825156.chain_2000	2
scaffold_16	starts_in_intron	4911421	4911421	-	asmbl_17082,asmbl_17084	none	STRG.19268.3,Trinity_GG_10809_c0_g1_i2,blat.proc3825158.chain_385	3	STRG.19268.1,STRG.19268.2,Trinity_GG_10809_c0_g1_i3,blat.proc3825158.chain_384	4
scaffold_13	alternate_exon	7718308	7720799	-	asmbl_9903	none	STRG.16058.1,Trinity_GG_8995_c0_g1_i3,blat.proc3825156.chain_886,blat.proc3825156.chain_890	4	blat.proc3825156.chain_891	1
scaffold_3	ends_in_intron	3249140	3249140	+	asmbl_39947	none	blat.proc3825164.chain_3380	1	STRG.3072.2,STRG.3072.4,STRG.3072.5,blat.proc3825164.chain_3395	4
scaffold_5	starts_in_intron	15522054	15522054	-	asmbl_44688	none	blat.proc3825150.chain_2946	1	STRG.6745.2,blat.proc3825150.chain_2943	2
scaffold_8	skipped_exon	10027223	10028131	-	asmbl_52089	none	STRG.10258.3	1	STRG.10258.1,STRG.10258.2,blat.proc3825152.chain_2533	3
scaffold_19	retained_intron	8805742	8805900	+	asmbl_21558	none	STRG.22329.3	1	STRG.22329.4	1
scaffold_3	retained_intron	6218352	6218491	-	asmbl_38924	none	STRG.3267.3,Trinity_GG_1744_c0_g2_i1,blat.proc3825148.chain_3067	3	STRG.3267.2	1
scaffold_26	alt_donor	2942392	2942393	-	asmbl_35453	none	STRG.27981.1	1	STRG.27981.2,STRG.27981.3	2
scaffold_12	alt_acceptor	4352582	4352583	+	asmbl_7607	none	STRG.14613.2	1	STRG.14613.1,blat.proc3825170.chain_3131,blat.proc3825170.chain_3132	3
scaffold_6	ends_in_intron	2934543	2934543	-	asmbl_48202	none	STRG.7301.2	1	STRG.7301.1,blat.proc3825150.chain_3322	2
scaffold_1	retained_intron	20341539	20341565	+	asmbl_2615	none	blat.proc3825164.chain_1589,blat.proc3825164.chain_1590	2	STRG.1396.4	1
scaffold_19	retained_exon	1667862	1667885	-	asmbl_22040	none	blat.proc3825158.chain_2768	1	STRG.21926.1,STRG.21926.2,blat.proc3825158.chain_2769	3
scaffold_14	alternate_exon	2301464	2301505	+	asmbl_11857	none	STRG.16845.2	1	STRG.16845.1	1
scaffold_17	spliced_intron	9428864	9428984	+	asmbl_19081	none	STRG.20564.1,blat.proc3825174.chain_1428	2	Trinity_GG_28576_c0_g1_i1,blat.proc3825174.chain_1427	2
scaffold_19	retained_intron	1504585	1504605	+	asmbl_21242,asmbl_21243,asmbl_21244,asmbl_21245	none	STRG.21912.1,STRG.21912.2,STRG.21912.3,STRG.21912.5,blat.proc3825174.chain_2941	5	STRG.21912.4	1
scaffold_15	retained_exon	14511002	14511039	+	asmbl_15685,asmbl_15686	none	STRG.18865.2,STRG.18865.3,blat.proc3825172.chain_3487,blat.proc3825172.chain_3488	4	STRG.18865.1,blat.proc3825172.chain_3489	2
scaffold_22	alt_donor	10682802	10682803	-	asmbl_29615	none	STRG.25415.2	1	STRG.25415.1,STRG.25415.3,blat.proc3825160.chain_2610	3
scaffold_13	retained_exon	518488	519848	+	asmbl_10486	none	STRG.15449.2,blat.proc3825172.chain_182	2	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3
scaffold_21	starts_in_intron	6953843	6953843	-	asmbl_27760	none	blat.proc3825160.chain_1292	1	STRG.24224.1,blat.proc3825160.chain_1293	2
scaffold_16	skipped_exon	14544204	14546155	-	asmbl_17461	none	STRG.19850.2	1	STRG.19850.1	1
scaffold_13	retained_exon	394757	394777	-	asmbl_9342,asmbl_9344,asmbl_9347,asmbl_9352,asmbl_9353,asmbl_9354	none	STRG.15444.1,STRG.15444.3,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_352,blat.proc3825156.chain_355,blat.proc3825156.chain_364	9	STRG.15444.2,STRG.15444.4,STRG.15444.5,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i5,blat.proc3825156.chain_351,blat.proc3825156.chain_354,blat.proc3825156.chain_360,blat.proc3825156.chain_362	11
scaffold_5	retained_exon	15706085	15706211	+	asmbl_46009,asmbl_46012	none	STRG.6765.1,blat.proc3825166.chain_2903,blat.proc3825166.chain_2904	3	STRG.6765.2	1
scaffold_15	alt_donor	15870629	15870630	+	asmbl_15834	none	STRG.18969.2,blat.proc3825172.chain_3546	2	STRG.18969.1,STRG.18969.3	2
scaffold_19	retained_intron	5594710	5594731	+	asmbl_21383	none	STRG.22121.1,Trinity_GG_29530_c0_g1_i1	2	blat.proc3825174.chain_3134	1
scaffold_25	skipped_exon	9119292	9120105	+	asmbl_33783	none	STRG.27725.3	1	STRG.27725.5,STRG.27725.6	2
scaffold_10	spliced_intron	1980607	1981557	-	asmbl_4090	none	STRG.12051.2,blat.proc3825154.chain_617	2	STRG.12051.1,blat.proc3825154.chain_616	2
scaffold_26	alt_acceptor	9847189	9847190	+	asmbl_35278,asmbl_35279,asmbl_35282,asmbl_35283,asmbl_35284,asmbl_35285,asmbl_35286,asmbl_35287,asmbl_35288,asmbl_35289	none	STRG.28546.1,STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1575,blat.proc3825178.chain_1576,blat.proc3825178.chain_1577,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	12	blat.proc3825178.chain_1574	1
scaffold_9	starts_in_intron	12068418	12068418	-	asmbl_55346	none	Trinity_GG_6348_c1_g1_i1,blat.proc3825152.chain_3730	2	STRG.11529.3	1
scaffold_14	starts_in_intron	1374293	1374293	-	asmbl_12877	none	blat.proc3825156.chain_1622	1	STRG.16791.1,STRG.16791.2,blat.proc3825156.chain_1624	3
scaffold_14	alt_acceptor	9071433	9071434	+	asmbl_12270	none	STRG.17319.2,blat.proc3825172.chain_2080	2	STRG.17319.1,blat.proc3825172.chain_2081	2
scaffold_7	starts_in_intron	818690	818690	+	asmbl_49563	none	Trinity_GG_22056_c0_g1_i8,blat.proc3825168.chain_1131	2	STRG.8623.1,STRG.8623.2,blat.proc3825168.chain_1125,blat.proc3825168.chain_1127,blat.proc3825168.chain_1129,blat.proc3825168.chain_1130	6
scaffold_14	retained_exon	7495630	7496652	+	asmbl_12166	none	STRG.17193.2,Trinity_GG_26725_c1_g1_i2,blat.proc3825172.chain_1878,blat.proc3825172.chain_1882	4	STRG.17193.3	1
scaffold_10	starts_in_intron	7828102	7828102	-	asmbl_4563	none	Trinity_GG_6983_c0_g1_i1,blat.proc3825154.chain_1085	2	STRG.12573.1,blat.proc3825154.chain_1084	2
scaffold_8	alternate_exon	4850935	4851055	-	asmbl_51808,asmbl_51809	none	STRG.9950.1,blat.proc3825152.chain_2223,blat.proc3825152.chain_2224,blat.proc3825152.chain_2225	4	STRG.9950.2,blat.proc3825152.chain_2226	2
scaffold_20	retained_intron	5922620	5922744	-	asmbl_25788,asmbl_25789	none	STRG.23199.1,STRG.23199.2,Trinity_GG_12939_c0_g1_i1,blat.proc3825160.chain_271	4	STRG.23199.3,STRG.23199.4,blat.proc3825160.chain_272	3
scaffold_1	ends_in_intron	1617139	1617139	+	asmbl_1501,asmbl_1503	none	STRG.113.4,Trinity_GG_17360_c0_g1_i4,blat.proc3825164.chain_163	3	STRG.113.1,Trinity_GG_17360_c0_g1_i2,Trinity_GG_17360_c0_g1_i5,blat.proc3825164.chain_165,blat.proc3825164.chain_167	5
scaffold_9	alt_acceptor	16712611	16712612	-	asmbl_55617	none	STRG.11817.1,Trinity_GG_6533_c0_g1_i1,blat.proc3825154.chain_301	3	STRG.11817.2	1
scaffold_23	spliced_intron	9517036	9517096	-	asmbl_31102	none	blat.proc3825160.chain_3315	1	Trinity_GG_14629_c2_g1_i2,blat.proc3825160.chain_3314	2
scaffold_6	ends_in_intron	5192714	5192714	+	asmbl_46929	none	STRG.7496.3	1	STRG.7496.1,STRG.7496.2,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i16,Trinity_GG_21344_c0_g1_i2,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3553,blat.proc3825166.chain_3554,blat.proc3825166.chain_3556	12
scaffold_7	starts_in_intron	18011240	18011240	-	asmbl_51447	none	blat.proc3825152.chain_1947	1	STRG.9643.1,blat.proc3825152.chain_1946	2
scaffold_7	starts_in_intron	8077899	8077899	-	asmbl_50983	none	blat.proc3825152.chain_1445	1	STRG.9048.1,STRG.9048.2,blat.proc3825152.chain_1444	3
scaffold_9	starts_in_intron	9704823	9704823	+	asmbl_54227,asmbl_54237,asmbl_54239	none	STRG.11349.6,blat.proc3825170.chain_140,blat.proc3825170.chain_145	3	STRG.11349.1,STRG.11349.2,STRG.11349.3,STRG.11349.4,blat.proc3825170.chain_139,blat.proc3825170.chain_143,blat.proc3825170.chain_144	7
scaffold_1	retained_intron	8990419	8991134	-	asmbl_508	none	STRG.598.1,blat.proc3825148.chain_595	2	blat.proc3825148.chain_594	1
scaffold_27	alt_acceptor	3099925	3099926	-	asmbl_36897	none	STRG.28794.1,blat.proc3825162.chain_2037	2	STRG.28794.2,blat.proc3825162.chain_2036	2
scaffold_22	starts_in_intron	11402149	11402149	+	asmbl_30377	none	Trinity_GG_31374_c2_g1_i1,blat.proc3825176.chain_2469	2	STRG.25474.1,STRG.25474.2	2
scaffold_25	ends_in_intron	5625819	5625819	-	asmbl_34272	none	Trinity_GG_15402_c0_g1_i1,blat.proc3825162.chain_831	2	STRG.27464.1,STRG.27464.2,blat.proc3825162.chain_828,blat.proc3825162.chain_829,blat.proc3825162.chain_830	5
scaffold_4	starts_in_intron	5231401	5231401	-	asmbl_42572,asmbl_42575	none	blat.proc3825150.chain_650,blat.proc3825150.chain_651	2	STRG.4416.2,blat.proc3825150.chain_648	2
scaffold_24	starts_in_intron	9937565	9937565	-	asmbl_33151	none	blat.proc3825162.chain_323	1	STRG.26967.7	1
scaffold_22	alternate_exon	685120	685157	+	asmbl_29878	none	Trinity_GG_30975_c0_g1_i1,blat.proc3825176.chain_1840	2	STRG.24720.2,Trinity_GG_30975_c0_g1_i2,blat.proc3825176.chain_1839	3
scaffold_23	starts_in_intron	10938817	10938817	-	asmbl_31177,asmbl_31178	none	Trinity_GG_14694_c0_g1_i1	1	STRG.26299.2	1
scaffold_12	alt_acceptor	13063856	13063857	-	asmbl_8913	none	STRG.15193.1,Trinity_GG_8492_c0_g1_i1,blat.proc3825154.chain_3705	3	STRG.15193.2	1
scaffold_14	starts_in_intron	5909785	5909785	-	asmbl_13099	none	STRG.17055.1	1	Trinity_GG_9544_c0_g1_i2,blat.proc3825156.chain_1834,blat.proc3825156.chain_1835	3
scaffold_14	starts_in_intron	1100690	1100690	+	asmbl_11803,asmbl_11804	none	Trinity_GG_26510_c0_g1_i2,Trinity_GG_26510_c0_g1_i6,blat.proc3825172.chain_1475,blat.proc3825172.chain_1479	4	STRG.16769.1,STRG.16769.2,STRG.16769.3,blat.proc3825172.chain_1477,blat.proc3825172.chain_1478,blat.proc3825172.chain_1480	6
scaffold_2	alt_acceptor	20423908	20423909	+	asmbl_25329	none	STRG.2881.2	1	STRG.2881.1,blat.proc3825164.chain_3113	2
scaffold_10	starts_in_intron	3788673	3788673	+	asmbl_3071	none	Trinity_GG_24099_c1_g2_i1	1	STRG.12211.2	1
scaffold_7	ends_in_intron	13506637	13506637	+	asmbl_50352	none	blat.proc3825168.chain_1934	1	STRG.9459.1,blat.proc3825168.chain_1933	2
scaffold_3	starts_in_intron	5008722	5008722	+	asmbl_40055	none	Trinity_GG_19135_c0_g1_i9,blat.proc3825164.chain_3492	2	STRG.3206.1,STRG.3206.2,blat.proc3825164.chain_3488	3
scaffold_23	alt_acceptor	7046494	7046495	-	asmbl_31015	none	blat.proc3825160.chain_3128	1	STRG.26031.1,blat.proc3825160.chain_3127	2
scaffold_10	spliced_intron	13544278	13544650	-	asmbl_4904,asmbl_4907	none	STRG.12954.1,blat.proc3825154.chain_1574,blat.proc3825154.chain_1576	3	Trinity_GG_7251_c0_g1_i1,Trinity_GG_7251_c0_g2_i2,blat.proc3825154.chain_1573,blat.proc3825154.chain_1575	4
scaffold_16	skipped_exon	672773	673471	+	asmbl_16034	none	STRG.19045.5,Trinity_GG_27750_c0_g1_i4,blat.proc3825172.chain_3700	3	STRG.19045.2,STRG.19045.3,Trinity_GG_27750_c0_g1_i5,blat.proc3825172.chain_3698,blat.proc3825172.chain_3701	5
scaffold_10	skipped_exon	926155	927706	-	asmbl_4012	none	STRG.11968.2	1	STRG.11968.1,Trinity_GG_6668_c0_g1_i1,Trinity_GG_6668_c0_g1_i2,blat.proc3825154.chain_538,blat.proc3825154.chain_540	5
scaffold_2	spliced_intron	8055011	8055080	-	asmbl_23302,asmbl_23303,asmbl_23304,asmbl_23305,asmbl_23306	none	STRG.2094.1,STRG.2094.2,STRG.2094.3,STRG.2094.4,blat.proc3825148.chain_2117,blat.proc3825148.chain_2118,blat.proc3825148.chain_2119,blat.proc3825148.chain_2121	8	blat.proc3825148.chain_2120	1
scaffold_18	alt_donor	13802531	13802532	+	asmbl_21036	none	STRG.21822.1,Trinity_GG_29370_c2_g1_i2,blat.proc3825174.chain_2844	3	blat.proc3825174.chain_2845	1
scaffold_12	alt_donor	15263554	15263555	-	asmbl_9065	none	STRG.15338.2	1	STRG.15338.1,Trinity_GG_8603_c0_g1_i1,blat.proc3825156.chain_178,blat.proc3825156.chain_180	4
scaffold_1	retained_intron	1042580	1042741	+	asmbl_1452	none	STRG.62.1,Trinity_GG_17322_c0_g1_i1,blat.proc3825164.chain_90	3	STRG.62.4	1
scaffold_2	starts_in_intron	10139265	10139265	+	asmbl_24696	none	STRG.2200.4,Trinity_GG_18562_c0_g1_i2,blat.proc3825164.chain_2405	3	STRG.2200.1,STRG.2200.2,STRG.2200.3,blat.proc3825164.chain_2404,blat.proc3825164.chain_2406,blat.proc3825164.chain_2407	6
scaffold_10	retained_intron	2787464	2787760	-	asmbl_4133,asmbl_4134,asmbl_4136	none	Trinity_GG_6692_c0_g1_i3,blat.proc3825154.chain_580,blat.proc3825154.chain_581,blat.proc3825154.chain_582,blat.proc3825154.chain_583	5	STRG.12105.1,Trinity_GG_6692_c0_g1_i1,Trinity_GG_6692_c0_g1_i6,blat.proc3825154.chain_585,blat.proc3825154.chain_586	5
scaffold_17	alt_acceptor	5726282	5726283	-	asmbl_17953	none	STRG.20273.1,blat.proc3825158.chain_1321	2	STRG.20273.3	1
scaffold_2	spliced_intron	2324086	2324113	-	asmbl_22890	none	STRG.1681.2	1	STRG.1681.1	1
scaffold_1	alt_acceptor	19006591	19006592	+	asmbl_2574	none	STRG.1324.3	1	STRG.1324.1	1
scaffold_16	retained_intron	6137953	6138100	-	asmbl_17144	none	STRG.19348.2,blat.proc3825158.chain_515	2	STRG.19348.1,blat.proc3825158.chain_514	2
scaffold_22	retained_intron	11393079	11393144	-	asmbl_29673	none	Trinity_GG_14242_c0_g1_i1	1	blat.proc3825160.chain_2670	1
scaffold_22	alternate_exon	1006301	1006835	+	asmbl_29911	none	STRG.24754.3,Trinity_GG_30985_c0_g1_i9,blat.proc3825176.chain_1860	3	STRG.24754.1,Trinity_GG_30985_c0_g1_i3,blat.proc3825176.chain_1857	3
scaffold_28	retained_intron	7438245	7438344	+	asmbl_37679	none	STRG.29823.2,blat.proc3825178.chain_2940	2	STRG.29823.1,blat.proc3825178.chain_2939	2
scaffold_1	alternate_exon	7282641	7283527	-	asmbl_424	none	STRG.519.1,blat.proc3825148.chain_447	2	STRG.519.3,blat.proc3825148.chain_448	2
scaffold_21	retained_intron	2947813	2947912	-	asmbl_27492	none	STRG.23917.2,blat.proc3825160.chain_984	2	STRG.23917.3,blat.proc3825160.chain_988	2
scaffold_12	retained_exon	9668732	9668837	+	asmbl_7871	none	STRG.14944.1	1	STRG.14944.2,Trinity_GG_25536_c0_g1_i3,blat.proc3825170.chain_3434	3
scaffold_12	ends_in_intron	16176087	16176087	+	asmbl_8147	none	STRG.15373.2,blat.proc3825172.chain_90	2	STRG.15373.1,STRG.15373.3,Trinity_GG_25755_c0_g1_i1,Trinity_GG_25755_c0_g1_i3,blat.proc3825172.chain_87,blat.proc3825172.chain_89	6
scaffold_3	starts_in_intron	6064289	6064289	-	asmbl_38898	none	Trinity_GG_1775_c3_g1_i1,blat.proc3825148.chain_3135	2	STRG.3258.1,STRG.3258.2,blat.proc3825148.chain_3126,blat.proc3825148.chain_3127,blat.proc3825148.chain_3128,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131	7
scaffold_2	alt_acceptor	15650761	15650762	-	asmbl_23646	none	STRG.2518.2	1	STRG.2518.1,blat.proc3825148.chain_2484	2
scaffold_9	spliced_intron	16559310	16560403	-	asmbl_55583	none	STRG.11806.5	1	STRG.11806.3,STRG.11806.4,STRG.11806.6,Trinity_GG_6524_c0_g2_i1,Trinity_GG_6524_c0_g2_i2,Trinity_GG_6524_c2_g1_i1,blat.proc3825154.chain_275,blat.proc3825154.chain_276,blat.proc3825154.chain_278	9
scaffold_23	alternate_exon	2634715	2634920	+	asmbl_31412	none	STRG.25731.5,Trinity_GG_31521_c0_g1_i6,blat.proc3825176.chain_2693	3	STRG.25731.3	1
scaffold_11	alternate_exon	13382579	13382607	+	asmbl_6052,asmbl_6054	none	STRG.14203.2,blat.proc3825170.chain_2760,blat.proc3825170.chain_2761	3	STRG.14203.1,STRG.14203.3	2
scaffold_17	alt_acceptor	11959250	11959251	-	asmbl_18303,asmbl_18304	none	STRG.20722.2,STRG.20722.3,blat.proc3825158.chain_1749,blat.proc3825158.chain_1752	4	STRG.20722.5	1
scaffold_12	starts_in_intron	9987427	9987427	-	asmbl_8708	none	STRG.14972.1,blat.proc3825154.chain_3441	2	STRG.14972.3,blat.proc3825154.chain_3439	2
scaffold_4	starts_in_intron	12687283	12687283	+	asmbl_41734	none	Trinity_GG_20039_c0_g1_i1,blat.proc3825166.chain_1315	2	STRG.4909.1	1
scaffold_22	starts_in_intron	205091	205091	+	asmbl_29815,asmbl_29817	none	STRG.24674.2,Trinity_GG_30943_c0_g1_i1,Trinity_GG_30943_c0_g1_i3,blat.proc3825176.chain_1779,blat.proc3825176.chain_1780	5	STRG.24674.1,blat.proc3825176.chain_1781	2
scaffold_4	ends_in_intron	14650104	14650104	-	asmbl_43065	none	Trinity_GG_2818_c0_g1_i2,blat.proc3825150.chain_1235	2	STRG.5090.1,STRG.5090.2,STRG.5090.3,blat.proc3825150.chain_1236,blat.proc3825150.chain_1237,blat.proc3825150.chain_1238	6
scaffold_3	alternate_exon	3248163	3251992	+	asmbl_39946	none	STRG.3072.4	1	STRG.3072.3,Trinity_GG_19083_c1_g1_i21,blat.proc3825164.chain_3392	3
scaffold_8	ends_in_intron	12911302	12911302	-	asmbl_52253,asmbl_52257	none	STRG.10480.4,Trinity_GG_5838_c2_g1_i1,blat.proc3825152.chain_2735	3	STRG.10480.2,STRG.10480.3	2
scaffold_10	retained_exon	976258	976768	-	asmbl_4019,asmbl_4020	none	STRG.11979.1,STRG.11979.2,Trinity_GG_6637_c0_g1_i3,Trinity_GG_6637_c0_g1_i5	4	Trinity_GG_6637_c0_g1_i6	1
scaffold_1	alt_donor	5199329	5199330	-	asmbl_242	none	STRG.326.2	1	STRG.326.1,blat.proc3825148.chain_306	2
scaffold_15	alternate_exon	7184177	7184303	-	asmbl_14276	none	STRG.18310.3,blat.proc3825156.chain_3042	2	STRG.18310.1,STRG.18310.2,blat.proc3825156.chain_3040,blat.proc3825156.chain_3043	4
scaffold_3	spliced_intron	5774893	5775417	-	asmbl_38860,asmbl_38862,asmbl_38865	none	STRG.3244.1,STRG.3244.3,blat.proc3825148.chain_3041	3	STRG.3244.2,STRG.3244.4,Trinity_GG_1733_c0_g1_i4,blat.proc3825148.chain_3038,blat.proc3825148.chain_3039	5
scaffold_28	spliced_intron	5390808	5391483	+	asmbl_37585,asmbl_37587	none	STRG.29687.3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866	3	STRG.29687.4,Trinity_GG_33768_c0_g1_i8,blat.proc3825178.chain_2867	3
scaffold_20	starts_in_intron	865794	865794	+	asmbl_26394	none	blat.proc3825176.chain_30	1	STRG.22799.1,blat.proc3825176.chain_29	2
scaffold_21	alternate_exon	1174350	1175433	-	asmbl_27387	none	STRG.23795.2,Trinity_GG_13264_c0_g1_i3,blat.proc3825160.chain_929	3	STRG.23795.4,blat.proc3825160.chain_928	2
scaffold_14	starts_in_intron	6891095	6891095	+	asmbl_12109	none	Trinity_GG_26740_c0_g1_i1	1	STRG.17129.1	1
scaffold_6	skipped_exon	19115800	19116613	-	asmbl_49301	none	STRG.8585.3,Trinity_GG_4894_c0_g1_i1,blat.proc3825152.chain_1022	3	STRG.8585.1,Trinity_GG_4894_c0_g1_i2,blat.proc3825152.chain_1021	3
scaffold_22	alt_acceptor	17111	17112	+	asmbl_29791	none	STRG.24657.1,Trinity_GG_30920_c0_g1_i1,blat.proc3825176.chain_1745	3	STRG.24657.2	1
scaffold_22	starts_in_intron	4378001	4378001	+	asmbl_30001	none	Trinity_GG_31052_c0_g1_i2,blat.proc3825176.chain_1968	2	STRG.24859.1,Trinity_GG_31052_c0_g1_i1,blat.proc3825176.chain_1969	3
scaffold_1	starts_in_intron	12689100	12689100	-	asmbl_746	none	Trinity_GG_464_c0_g1_i6,blat.proc3825148.chain_878	2	STRG.893.1,STRG.893.2,STRG.893.3,STRG.893.4,Trinity_GG_464_c0_g1_i2,blat.proc3825148.chain_876,blat.proc3825148.chain_877	7
scaffold_21	retained_intron	10120864	10120890	+	asmbl_28859	none	Trinity_GG_30844_c0_g1_i1,Trinity_GG_30844_c0_g1_i2,blat.proc3825176.chain_1623	3	STRG.24478.1	1
scaffold_9	alt_acceptor	1232182	1232183	+	asmbl_53804	none	STRG.10825.2	1	STRG.10825.1	1
scaffold_14	starts_in_intron	5910181	5910181	-	asmbl_13100	none	Trinity_GG_9544_c0_g1_i2,blat.proc3825156.chain_1834	2	blat.proc3825156.chain_1835	1
scaffold_9	alternate_exon	16554170	16554478	-	asmbl_55578	none	STRG.11790.1,blat.proc3825154.chain_253	2	blat.proc3825154.chain_252	1
scaffold_14	skipped_exon	7432572	7433301	+	asmbl_12157,asmbl_12159	none	STRG.17180.1,STRG.17180.3,blat.proc3825172.chain_1872	3	STRG.17180.2,blat.proc3825172.chain_1873	2
scaffold_8	retained_exon	6162464	6162714	-	asmbl_51869	none	blat.proc3825152.chain_2276	1	STRG.10030.1,STRG.10030.3,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275	7
scaffold_18	alt_donor	7199463	7199464	+	asmbl_20717	none	STRG.21425.3	1	STRG.21425.1,Trinity_GG_29093_c0_g1_i2,blat.proc3825174.chain_2364	3
scaffold_13	alt_acceptor	3476938	3476939	-	asmbl_9542	none	STRG.15658.2	1	STRG.15658.1,blat.proc3825156.chain_523	2
scaffold_21	starts_in_intron	11261089	11261089	-	asmbl_28110	none	Trinity_GG_13755_c0_g1_i1,blat.proc3825160.chain_1805	2	STRG.24600.1,Trinity_GG_13755_c0_g1_i3,Trinity_GG_13755_c0_g1_i4,Trinity_GG_13755_c0_g1_i5,blat.proc3825160.chain_1802,blat.proc3825160.chain_1803,blat.proc3825160.chain_1804	7
scaffold_7	alt_donor	8318941	8318942	-	asmbl_50999,asmbl_51006	none	STRG.9070.4,blat.proc3825152.chain_1369	2	blat.proc3825152.chain_1371	1
scaffold_5	retained_intron	8791720	8791899	+	asmbl_45577	none	blat.proc3825166.chain_2448	1	STRG.6219.1,Trinity_GG_20718_c0_g1_i5,blat.proc3825166.chain_2446,blat.proc3825166.chain_2447	4
scaffold_3	ends_in_intron	6077915	6077915	-	asmbl_38897	none	Trinity_GG_1775_c0_g1_i5,blat.proc3825148.chain_3129	2	STRG.3258.2,STRG.3258.3,blat.proc3825148.chain_3126,blat.proc3825148.chain_3128	4
scaffold_16	ends_in_intron	11433283	11433283	-	asmbl_17351	none	blat.proc3825158.chain_748	1	STRG.19672.1,blat.proc3825158.chain_749	2
scaffold_1	spliced_intron	11626819	11626939	-	asmbl_646,asmbl_647,asmbl_648,asmbl_650	none	STRG.769.1,Trinity_GG_386_c0_g1_i1,Trinity_GG_386_c0_g1_i7,blat.proc3825148.chain_719,blat.proc3825148.chain_721,blat.proc3825148.chain_722	6	blat.proc3825148.chain_723	1
scaffold_8	retained_intron	16397415	16398401	-	asmbl_52386,asmbl_52388,asmbl_52394,asmbl_52395	none	STRG.10626.1,STRG.10626.2,blat.proc3825152.chain_2845,blat.proc3825152.chain_2848,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	6	blat.proc3825152.chain_2851	1
scaffold_4	starts_in_intron	4551354	4551354	+	asmbl_41289	none	Trinity_GG_19722_c3_g1_i1,blat.proc3825166.chain_783	2	STRG.4367.1,STRG.4367.2,blat.proc3825166.chain_779	3
scaffold_16	retained_intron	6195725	6195800	+	asmbl_16297	none	blat.proc3825174.chain_257	1	STRG.19370.1,STRG.19370.2,blat.proc3825174.chain_258,blat.proc3825174.chain_260,blat.proc3825174.chain_261	5
scaffold_7	starts_in_intron	1518097	1518097	+	asmbl_49615	none	Trinity_GG_22028_c0_g1_i1,blat.proc3825168.chain_1050	2	STRG.8646.1,STRG.8646.2,Trinity_GG_22028_c0_g1_i2,blat.proc3825168.chain_1051,blat.proc3825168.chain_1052	5
scaffold_12	spliced_intron	7643813	7644059	+	asmbl_7774	none	STRG.14844.1,Trinity_GG_25509_c0_g1_i2,blat.proc3825170.chain_3378	3	Trinity_GG_25509_c0_g1_i1,blat.proc3825170.chain_3377	2
scaffold_3	alt_donor	10275118	10275119	+	asmbl_40250,asmbl_40256	none	blat.proc3825164.chain_3728,blat.proc3825164.chain_3736	2	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3
scaffold_228	skipped_exon	4088	5334	-	asmbl_30563	none	STRG.30244.2,blat.proc3825162.chain_3373	2	STRG.30244.1,blat.proc3825162.chain_3375	2
scaffold_27	spliced_intron	7277981	7278212	+	asmbl_36446	none	STRG.29091.2	1	STRG.29091.1,Trinity_GG_33354_c0_g1_i1,blat.proc3825178.chain_2188	3
scaffold_6	retained_exon	3041413	3041909	-	asmbl_48218	none	STRG.7310.2,blat.proc3825150.chain_3455	2	STRG.7310.1,blat.proc3825150.chain_3457	2
scaffold_11	retained_intron	14794936	14794956	+	asmbl_6101	none	Trinity_GG_25165_c0_g1_i2	1	STRG.14260.1	1
scaffold_19	spliced_intron	2780819	2780920	+	asmbl_21276,asmbl_21280,asmbl_21282	none	STRG.21962.1,STRG.21962.5,blat.proc3825174.chain_2998	3	STRG.21962.3,STRG.21962.4,Trinity_GG_29459_c0_g1_i7,blat.proc3825174.chain_3000	4
scaffold_1	alternate_exon	18486789	18488232	-	asmbl_1116	none	STRG.1298.4	1	STRG.1298.5	1
scaffold_6	starts_in_intron	14471332	14471332	-	asmbl_49008	none	STRG.8209.1,blat.proc3825152.chain_581	2	STRG.8209.2,STRG.8209.3,Trinity_GG_4640_c0_g1_i2,blat.proc3825152.chain_582	4
scaffold_6	alt_acceptor	5056398	5056399	-	asmbl_48391	none	STRG.7486.5	1	STRG.7486.1,STRG.7486.2,STRG.7486.3,blat.proc3825150.chain_3643,blat.proc3825150.chain_3645	5
scaffold_12	alt_acceptor	7275936	7275937	-	asmbl_8564	none	STRG.14801.1,Trinity_GG_8260_c0_g1_i1,blat.proc3825154.chain_3308	3	STRG.14801.2,Trinity_GG_8260_c0_g1_i2,blat.proc3825154.chain_3307	3
scaffold_2	spliced_intron	11199609	11200469	-	asmbl_23446	none	STRG.2253.1,blat.proc3825148.chain_2249	2	blat.proc3825148.chain_2247,blat.proc3825148.chain_2248	2
scaffold_9	spliced_intron	7823073	7823170	-	asmbl_55111	none	STRG.11225.1,blat.proc3825152.chain_3460	2	blat.proc3825152.chain_3461	1
scaffold_19	alt_donor	7964948	7964949	-	asmbl_22269	none	STRG.22260.1	1	STRG.22260.2,blat.proc3825158.chain_3045	2
scaffold_22	starts_in_intron	4287128	4287128	-	asmbl_29238	none	STRG.24854.2,blat.proc3825160.chain_2085	2	STRG.24854.1,STRG.24854.3,blat.proc3825160.chain_2083,blat.proc3825160.chain_2084,blat.proc3825160.chain_2087	5
scaffold_3	alt_donor	1551310	1551311	-	asmbl_38720,asmbl_38722	none	STRG.2986.3,blat.proc3825148.chain_2852	2	STRG.2986.1,STRG.2986.2,blat.proc3825148.chain_2849	3
scaffold_11	alt_donor	3552623	3552624	+	asmbl_5452	none	blat.proc3825170.chain_2027	1	STRG.13482.1,blat.proc3825170.chain_2029	2
scaffold_1	starts_in_intron	5738303	5738303	+	asmbl_1779,asmbl_1780,asmbl_1782	none	blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_529	3	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_530	4
scaffold_1	starts_in_intron	9208495	9208495	+	asmbl_1963	none	blat.proc3825164.chain_717	1	STRG.615.1,blat.proc3825164.chain_716	2
scaffold_26	retained_intron	4135749	4135855	-	asmbl_35532	none	blat.proc3825162.chain_1394	1	STRG.28116.1,STRG.28116.2,STRG.28116.3,STRG.28116.4,blat.proc3825162.chain_1393,blat.proc3825162.chain_1395	6
scaffold_26	alternate_exon	5843335	5843451	+	asmbl_35043	none	STRG.28286.1,Trinity_GG_32891_c0_g1_i1,blat.proc3825178.chain_1285	3	Trinity_GG_32891_c1_g1_i1	1
scaffold_9	starts_in_intron	2802193	2802193	+	asmbl_53869	none	blat.proc3825168.chain_3434	1	STRG.10918.1,STRG.10918.2,STRG.10918.4,STRG.10918.5,STRG.10918.6,STRG.10918.7,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3428,blat.proc3825168.chain_3430,blat.proc3825168.chain_3431	10
scaffold_4	retained_intron	5231186	5231400	-	asmbl_42572,asmbl_42575	none	Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_650,blat.proc3825150.chain_651	3	STRG.4416.3,STRG.4416.4,STRG.4416.5,blat.proc3825150.chain_649	4
scaffold_10	starts_in_intron	6411938	6411938	-	asmbl_4454	none	blat.proc3825154.chain_1022	1	STRG.12469.1,blat.proc3825154.chain_1025	2
scaffold_24	alternate_exon	6726585	6727650	-	asmbl_32971	none	blat.proc3825162.chain_96	1	STRG.26723.2,blat.proc3825162.chain_99	2
scaffold_20	spliced_intron	11142153	11142251	+	asmbl_27014	none	STRG.23640.3,Trinity_GG_30351_c0_g1_i5,blat.proc3825176.chain_748	3	STRG.23640.1,STRG.23640.2,Trinity_GG_30351_c0_g1_i3,Trinity_GG_30351_c0_g1_i4,blat.proc3825176.chain_750,blat.proc3825176.chain_752	6
scaffold_10	alt_acceptor	2678304	2678305	+	asmbl_2991,asmbl_2994	none	STRG.12083.3,STRG.12083.4,blat.proc3825170.chain_832	3	STRG.12083.1,STRG.12083.2	2
scaffold_28	retained_intron	5024052	5024125	+	asmbl_37566	none	STRG.29654.4,Trinity_GG_33717_c2_g1_i2,blat.proc3825178.chain_2769	3	STRG.29654.1,STRG.29654.2,blat.proc3825178.chain_2770	3
scaffold_9	ends_in_intron	9705924	9705924	+	asmbl_54227,asmbl_54228	none	STRG.11349.4,Trinity_GG_23640_c1_g1_i4,blat.proc3825170.chain_141,blat.proc3825170.chain_145	4	STRG.11349.1,STRG.11349.2,STRG.11349.3,STRG.11349.6,Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_139,blat.proc3825170.chain_140,blat.proc3825170.chain_143,blat.proc3825170.chain_144,blat.proc3825170.chain_146	10
scaffold_15	retained_intron	2467971	2467990	-	asmbl_14012	none	Trinity_GG_10137_c0_g1_i1	1	STRG.18028.1	1
scaffold_6	retained_intron	2699075	2699232	-	asmbl_48150	none	STRG.7265.2	1	STRG.7265.1,blat.proc3825150.chain_3386	2
scaffold_6	retained_intron	17883201	17883316	-	asmbl_49212	none	Trinity_GG_4813_c0_g1_i6,blat.proc3825152.chain_877	2	STRG.8481.1,STRG.8481.3,blat.proc3825152.chain_879,blat.proc3825152.chain_880	4
scaffold_9	alt_acceptor	3411471	3411472	-	asmbl_54901,asmbl_54902,asmbl_54904	none	STRG.10955.3,blat.proc3825152.chain_3203,blat.proc3825152.chain_3205	3	STRG.10955.1,blat.proc3825152.chain_3206	2
scaffold_1	starts_in_intron	863451	863451	+	asmbl_1433	none	Trinity_GG_17351_c0_g1_i3,blat.proc3825164.chain_139	2	STRG.38.1,STRG.38.2,Trinity_GG_17351_c0_g1_i2,Trinity_GG_17351_c0_g1_i4,blat.proc3825164.chain_138,blat.proc3825164.chain_140	6
scaffold_1	retained_intron	12407161	12407709	+	asmbl_2210	none	Trinity_GG_17800_c0_g1_i5,blat.proc3825164.chain_945	2	STRG.856.1,STRG.856.2,Trinity_GG_17800_c0_g1_i1,Trinity_GG_17800_c0_g1_i2,Trinity_GG_17800_c0_g1_i3,blat.proc3825164.chain_943,blat.proc3825164.chain_944,blat.proc3825164.chain_946	8
scaffold_4	retained_exon	5034529	5034615	-	asmbl_42552,asmbl_42553	none	STRG.4399.1,STRG.4399.3	2	STRG.4399.2	1
scaffold_26	spliced_intron	6703606	6703786	-	asmbl_35696,asmbl_35698,asmbl_35700,asmbl_35701	none	STRG.28371.1,STRG.28371.2,STRG.28371.3,blat.proc3825162.chain_1602,blat.proc3825162.chain_1604	5	blat.proc3825162.chain_1601,blat.proc3825162.chain_1605	2
scaffold_4	retained_exon	10856850	10856930	+	asmbl_41674	none	STRG.4807.2,blat.proc3825166.chain_1275	2	STRG.4807.1	1
scaffold_4	starts_in_intron	13184834	13184834	-	asmbl_42981	none	STRG.4962.2,blat.proc3825150.chain_1154	2	STRG.4962.1,STRG.4962.3,blat.proc3825150.chain_1153,blat.proc3825150.chain_1156	4
scaffold_13	alternate_exon	5458055	5458344	+	asmbl_10850	none	STRG.15841.2,blat.proc3825172.chain_519	2	STRG.15841.1,blat.proc3825172.chain_518	2
scaffold_28	retained_intron	221848	222198	-	asmbl_37901,asmbl_37902	none	STRG.29247.1,STRG.29247.3	2	STRG.29247.2	1
scaffold_26	retained_intron	4593627	4593805	-	asmbl_35569,asmbl_35572	none	Trinity_GG_15782_c0_g1_i1,blat.proc3825162.chain_1435,blat.proc3825162.chain_1437	3	STRG.28182.2	1
scaffold_19	retained_intron	10303465	10303671	+	asmbl_21646,asmbl_21647	none	STRG.22416.2,blat.proc3825174.chain_3425	2	STRG.22416.1,blat.proc3825174.chain_3424	2
scaffold_8	alternate_exon	9281834	9281867	+	asmbl_53067	none	STRG.10187.2,blat.proc3825168.chain_2743	2	STRG.10187.1,blat.proc3825168.chain_2742	2
scaffold_20	ends_in_intron	9621044	9621044	-	asmbl_26047	none	blat.proc3825160.chain_580	1	STRG.23500.1,blat.proc3825160.chain_579	2
scaffold_17	starts_in_intron	544720	544720	+	asmbl_18552	none	blat.proc3825174.chain_795	1	STRG.19908.1,Trinity_GG_28212_c0_g1_i1,blat.proc3825174.chain_794	3
scaffold_13	skipped_exon	11379416	11382289	-	asmbl_10086,asmbl_10090	none	STRG.16301.3,blat.proc3825156.chain_1170,blat.proc3825156.chain_1173	3	STRG.16301.1,STRG.16301.2,blat.proc3825156.chain_1172,blat.proc3825156.chain_1174	4
scaffold_9	alternate_exon	11829494	11831597	-	asmbl_55319	none	STRG.11499.2	1	blat.proc3825152.chain_3676	1
scaffold_2	spliced_intron	7240470	7240767	+	asmbl_24552,asmbl_24553,asmbl_24555,asmbl_24556,asmbl_24557	none	STRG.2055.1,blat.proc3825164.chain_2167,blat.proc3825164.chain_2170,blat.proc3825164.chain_2171,blat.proc3825164.chain_2172,blat.proc3825164.chain_2173	6	blat.proc3825164.chain_2169	1
scaffold_3	alt_acceptor	5253763	5253764	+	asmbl_40065	none	STRG.3214.1,Trinity_GG_19128_c1_g1_i1,blat.proc3825164.chain_3476	3	STRG.3214.2	1
scaffold_12	starts_in_intron	14226408	14226408	+	asmbl_8073	none	blat.proc3825172.chain_13	1	STRG.15261.2,blat.proc3825172.chain_14	2
scaffold_26	alternate_exon	9839382	9842107	-	asmbl_35793	none	STRG.28545.1,Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	3	Trinity_GG_15923_c0_g1_i4,blat.proc3825162.chain_1673	2
scaffold_18	alternate_exon	199705	204473	+	asmbl_20276	none	STRG.20974.3	1	Trinity_GG_28858_c0_g1_i1,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1919,blat.proc3825174.chain_1923	4
scaffold_23	starts_in_intron	6676390	6676390	+	asmbl_31643	none	Trinity_GG_31657_c0_g1_i1,blat.proc3825176.chain_2945	2	STRG.25994.1,blat.proc3825176.chain_2944	2
scaffold_12	alt_donor	3633547	3633548	+	asmbl_7564	none	STRG.14577.2	1	STRG.14577.1,blat.proc3825170.chain_3116	2
scaffold_13	starts_in_intron	7005635	7005635	-	asmbl_9833	none	blat.proc3825156.chain_812	1	STRG.15987.1	1
scaffold_22	retained_exon	4239310	4240364	-	asmbl_29212,asmbl_29219	none	STRG.24845.1,blat.proc3825160.chain_2067,blat.proc3825160.chain_2068	3	STRG.24845.2,Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065	3
scaffold_17	starts_in_intron	8219209	8219209	+	asmbl_18949	none	Trinity_GG_28483_c0_g3_i1,blat.proc3825174.chain_1250	2	STRG.20449.1,blat.proc3825174.chain_1248	2
scaffold_25	starts_in_intron	3296436	3296436	-	asmbl_34118,asmbl_34123,asmbl_34124,asmbl_34126	none	STRG.27284.3,STRG.27284.6,STRG.27284.7,STRG.27284.8	4	STRG.27284.2	1
scaffold_13	alt_donor	388060	388061	-	asmbl_9328	none	STRG.15438.2,blat.proc3825156.chain_284	2	STRG.15438.1,blat.proc3825156.chain_287	2
scaffold_4	alternate_exon	16873885	16874556	-	asmbl_43228	none	STRG.5273.2	1	STRG.5273.3,STRG.5273.4	2
scaffold_21	alt_acceptor	3820506	3820507	-	asmbl_27544	none	STRG.23971.1,blat.proc3825160.chain_1105	2	STRG.23971.2	1
scaffold_4	spliced_intron	4121588	4121687	-	asmbl_42498,asmbl_42500	none	STRG.4329.2,blat.proc3825150.chain_594	2	STRG.4329.3,Trinity_GG_2440_c0_g1_i3,blat.proc3825150.chain_595	3
scaffold_22	retained_intron	900648	900742	+	asmbl_29898	none	Trinity_GG_30991_c0_g1_i3,blat.proc3825176.chain_1872	2	Trinity_GG_30991_c0_g1_i2,blat.proc3825176.chain_1870	2
scaffold_24	retained_exon	10131904	10132036	+	asmbl_32544	none	STRG.26980.2	1	STRG.26980.1,Trinity_GG_32205_c1_g1_i1,blat.proc3825178.chain_131	3
scaffold_26	ends_in_intron	1889118	1889118	-	asmbl_35420	none	blat.proc3825162.chain_1242	1	STRG.27936.1,blat.proc3825162.chain_1240,blat.proc3825162.chain_1241	3
scaffold_3	alt_donor	6645151	6645152	+	asmbl_40100	none	STRG.3287.2	1	STRG.3287.1,blat.proc3825164.chain_3535	2
scaffold_12	retained_intron	16338941	16339103	+	asmbl_8163	none	blat.proc3825172.chain_103	1	STRG.15393.2,blat.proc3825172.chain_104	2
scaffold_1	alt_donor	7441511	7441512	-	asmbl_438	none	STRG.525.1,blat.proc3825148.chain_500	2	STRG.525.2	1
scaffold_27	spliced_intron	638419	638515	-	asmbl_36710,asmbl_36712	none	STRG.28585.1,Trinity_GG_16002_c1_g1_i6,blat.proc3825162.chain_1843	3	Trinity_GG_16002_c1_g1_i3,blat.proc3825162.chain_1844	2
scaffold_22	ends_in_intron	6841411	6841411	+	asmbl_30127	none	blat.proc3825176.chain_2116	1	STRG.25002.1,blat.proc3825176.chain_2117	2
scaffold_16	ends_in_intron	3690794	3690794	-	asmbl_16994	none	Trinity_GG_10764_c0_g1_i1,blat.proc3825158.chain_298	2	STRG.19174.1,blat.proc3825158.chain_297	2
scaffold_1	starts_in_intron	6128954	6128954	-	asmbl_318	none	STRG.415.1,blat.proc3825148.chain_393	2	STRG.415.2,blat.proc3825148.chain_394	2
scaffold_4	alt_acceptor	16133581	16133582	-	asmbl_43140	none	STRG.5184.2,blat.proc3825150.chain_1342	2	STRG.5184.3	1
scaffold_7	starts_in_intron	8195225	8195225	+	asmbl_49966	none	Trinity_GG_22323_c0_g1_i4,blat.proc3825168.chain_1545	2	STRG.9057.1,STRG.9057.2,blat.proc3825168.chain_1547,blat.proc3825168.chain_1549	4
scaffold_12	spliced_intron	16247233	16247319	+	asmbl_8155,asmbl_8158	none	STRG.15380.1,Trinity_GG_25754_c0_g1_i2,blat.proc3825172.chain_85	3	STRG.15380.3,Trinity_GG_25754_c0_g1_i1,blat.proc3825172.chain_84	3
scaffold_25	retained_exon	2639354	2639653	+	asmbl_33394	none	STRG.27232.1,blat.proc3825178.chain_350	2	blat.proc3825178.chain_351	1
scaffold_22	starts_in_intron	958108	958108	+	asmbl_29906	none	Trinity_GG_31006_c0_g1_i3,blat.proc3825176.chain_1892	2	STRG.24741.1,Trinity_GG_31006_c0_g1_i1,blat.proc3825176.chain_1893	3
scaffold_12	starts_in_intron	2416311	2416311	+	asmbl_7491	none	blat.proc3825170.chain_3034	1	STRG.14499.1,blat.proc3825170.chain_3035	2
scaffold_20	skipped_exon	10384363	10384667	+	asmbl_26954,asmbl_26961	none	STRG.23583.1,STRG.23583.2,Trinity_GG_30302_c0_g1_i1,blat.proc3825176.chain_670	4	STRG.23583.4	1
scaffold_14	retained_intron	3152638	3152817	+	asmbl_11922	none	blat.proc3825172.chain_1603	1	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i11,Trinity_GG_26576_c0_g1_i12,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1601,blat.proc3825172.chain_1602,blat.proc3825172.chain_1604,blat.proc3825172.chain_1605,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	19
scaffold_18	starts_in_intron	8375393	8375393	-	asmbl_20000,asmbl_20001	none	STRG.21509.1,STRG.21509.3	2	STRG.21509.2	1
scaffold_1325	alt_donor	1604	1605	+	asmbl_11712,asmbl_11714	none	STRG.30586.1,STRG.30586.2	2	STRG.30586.3	1
scaffold_26	alternate_exon	3622911	3623023	+	asmbl_34802	none	STRG.28042.3	1	STRG.28042.2,blat.proc3825178.chain_1087	2
scaffold_24	starts_in_intron	6724785	6724785	-	asmbl_32968	none	blat.proc3825162.chain_97	1	STRG.26723.1,STRG.26723.2,blat.proc3825162.chain_100,blat.proc3825162.chain_98,blat.proc3825162.chain_99	5
scaffold_10	spliced_intron	17090940	17090995	-	asmbl_5031	none	STRG.13160.2	1	STRG.13160.1	1
scaffold_3	spliced_intron	18733461	18733619	+	asmbl_40742	none	STRG.4057.1,blat.proc3825166.chain_543	2	blat.proc3825166.chain_542	1
scaffold_14	retained_exon	12220215	12220349	-	asmbl_13557	none	STRG.17553.1	1	STRG.17553.2,blat.proc3825156.chain_2378	2
scaffold_1	skipped_exon	5963866	5964377	+	asmbl_1806	none	STRG.400.3	1	STRG.400.1,STRG.400.2,blat.proc3825164.chain_540	3
scaffold_19	spliced_intron	8870718	8870824	-	asmbl_22315	none	STRG.22342.1,blat.proc3825158.chain_3143	2	blat.proc3825158.chain_3144	1
scaffold_8	spliced_intron	12692846	12692968	+	asmbl_53325,asmbl_53326,asmbl_53328,asmbl_53329,asmbl_53330	none	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008	5	blat.proc3825168.chain_3009	1
scaffold_18	spliced_intron	1899809	1900625	-	asmbl_19653,asmbl_19655,asmbl_19656,asmbl_19658,asmbl_19659,asmbl_19660,asmbl_19661,asmbl_19663,asmbl_19665	none	STRG.21081.10,STRG.21081.3,STRG.21081.6,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	10	STRG.21081.7,STRG.21081.9,blat.proc3825158.chain_2010	3
scaffold_8	ends_in_intron	8971396	8971396	-	asmbl_51985	none	Trinity_GG_5668_c0_g1_i2,blat.proc3825152.chain_2423	2	STRG.10148.1,blat.proc3825152.chain_2424,blat.proc3825152.chain_2425	3
scaffold_3	spliced_intron	13327306	13327386	-	asmbl_39247,asmbl_39249	none	STRG.3680.1,STRG.3680.2,Trinity_GG_2014_c0_g1_i2,blat.proc3825148.chain_3553	4	Trinity_GG_2014_c0_g1_i1,blat.proc3825148.chain_3554	2
scaffold_9	starts_in_intron	1931608	1931608	-	asmbl_54854	none	blat.proc3825152.chain_3129	1	STRG.10873.1,blat.proc3825152.chain_3130	2
scaffold_19	alt_donor	726656	726657	+	asmbl_21205	none	STRG.21857.1	1	STRG.21857.2,STRG.21857.3,STRG.21857.4	3
scaffold_1	retained_intron	1250261	1250375	-	asmbl_58	none	STRG.76.2,Trinity_GG_6_c1_g1_i2,blat.proc3825148.chain_15	3	STRG.76.1,Trinity_GG_6_c1_g1_i1,blat.proc3825148.chain_16	3
scaffold_6	alt_acceptor	17835558	17835559	-	asmbl_49204	none	STRG.8473.1,blat.proc3825152.chain_856	2	STRG.8473.2	1
scaffold_14	retained_exon	659132	659204	-	asmbl_12838	none	STRG.16743.1,Trinity_GG_9335_c0_g1_i3,blat.proc3825156.chain_1496	3	Trinity_GG_9335_c0_g1_i1,blat.proc3825156.chain_1497	2
scaffold_14	starts_in_intron	2301168	2301168	+	asmbl_11859	none	Trinity_GG_26539_c3_g1_i1,blat.proc3825172.chain_1546	2	STRG.16845.2	1
scaffold_2	alt_acceptor	481943	481944	-	asmbl_22806	none	STRG.1532.2	1	STRG.1532.1,STRG.1532.3,blat.proc3825148.chain_1467	3
scaffold_17	alternate_exon	2713429	2713496	+	asmbl_18690	none	STRG.20070.1	1	STRG.20070.2	1
scaffold_15	alt_acceptor	11167142	11167143	+	asmbl_15484	none	STRG.18593.1	1	STRG.18593.2	1
scaffold_28	retained_intron	6926010	6926670	-	asmbl_38364	none	STRG.29766.1,Trinity_GG_16699_c0_g1_i2,blat.proc3825162.chain_2953	3	STRG.29766.2,blat.proc3825162.chain_2952	2
scaffold_8	ends_in_intron	14389221	14389221	-	asmbl_52309	none	Trinity_GG_5795_c0_g1_i6,blat.proc3825152.chain_2657	2	STRG.10525.1,STRG.10525.2,blat.proc3825152.chain_2656,blat.proc3825152.chain_2658,blat.proc3825152.chain_2659,blat.proc3825152.chain_2661	6
scaffold_2	retained_intron	7218817	7218918	+	asmbl_24540	none	STRG.2054.6,Trinity_GG_18495_c0_g1_i12,blat.proc3825164.chain_2269	3	STRG.2054.1,STRG.2054.5,Trinity_GG_18495_c0_g1_i13,Trinity_GG_18495_c0_g1_i2,Trinity_GG_18495_c0_g1_i4,blat.proc3825164.chain_2266,blat.proc3825164.chain_2267,blat.proc3825164.chain_2270,blat.proc3825164.chain_2274	9
scaffold_18	starts_in_intron	2831979	2831979	+	asmbl_20423	none	Trinity_GG_28933_c2_g1_i1,blat.proc3825174.chain_2059	2	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2052,blat.proc3825174.chain_2056	5
scaffold_14	starts_in_intron	6584855	6584855	+	asmbl_12090	none	blat.proc3825172.chain_1776	1	STRG.17108.1,STRG.17108.2,blat.proc3825172.chain_1777,blat.proc3825172.chain_1780	4
scaffold_28	starts_in_intron	7498275	7498275	+	asmbl_37684	none	Trinity_GG_33840_c3_g1_i1,blat.proc3825178.chain_3006	2	STRG.29829.1,STRG.29829.2,blat.proc3825178.chain_3002,blat.proc3825178.chain_3003	4
scaffold_21	skipped_exon	7937048	7937954	-	asmbl_27872	none	blat.proc3825160.chain_1469	1	STRG.24331.1,blat.proc3825160.chain_1472,blat.proc3825160.chain_1473	3
scaffold_18	spliced_intron	632566	632852	+	asmbl_20312	none	STRG.21004.1,blat.proc3825174.chain_1853	2	STRG.21004.2,blat.proc3825174.chain_1852	2
scaffold_7	retained_intron	16823575	16823876	-	asmbl_51413,asmbl_51415	none	STRG.9596.1,blat.proc3825152.chain_1902,blat.proc3825152.chain_1903	3	STRG.9596.2,blat.proc3825152.chain_1904	2
scaffold_16	spliced_intron	809175	809692	-	asmbl_16908,asmbl_16910,asmbl_16911	none	STRG.19064.1,blat.proc3825158.chain_130,blat.proc3825158.chain_131,blat.proc3825158.chain_132	4	STRG.19064.2,STRG.19064.3,blat.proc3825158.chain_128,blat.proc3825158.chain_129	4
scaffold_11	ends_in_intron	13256751	13256751	+	asmbl_6043	none	blat.proc3825170.chain_2731	1	STRG.14199.1,STRG.14199.2,blat.proc3825170.chain_2732	3
scaffold_17	alt_donor	9621583	9621584	-	asmbl_18187	none	STRG.20582.2,Trinity_GG_11575_c0_g1_i1,blat.proc3825158.chain_1605	3	STRG.20582.1,Trinity_GG_11575_c0_g1_i2,blat.proc3825158.chain_1606	3
scaffold_13	alt_donor	12243818	12243819	-	asmbl_10123	none	STRG.16353.1,blat.proc3825156.chain_1216	2	STRG.16353.2,STRG.16353.3,blat.proc3825156.chain_1217,blat.proc3825156.chain_1218	4
scaffold_12	spliced_intron	6947276	6947768	-	asmbl_8549,asmbl_8551	none	STRG.14768.1,blat.proc3825154.chain_3277,blat.proc3825154.chain_3278	3	STRG.14768.2,blat.proc3825154.chain_3276	2
scaffold_13	starts_in_intron	11633015	11633015	-	asmbl_10102	none	blat.proc3825156.chain_1166	1	STRG.16310.1,blat.proc3825156.chain_1165	2
scaffold_6	alt_donor	13000119	13000120	-	asmbl_48856,asmbl_48857,asmbl_48858,asmbl_48859,asmbl_48865	none	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,blat.proc3825152.chain_488,blat.proc3825152.chain_492,blat.proc3825152.chain_495	7	STRG.8068.5,blat.proc3825152.chain_491	2
scaffold_27	alt_acceptor	4153107	4153108	-	asmbl_36945	none	STRG.28874.1,blat.proc3825162.chain_2118	2	STRG.28874.2	1
scaffold_1	alternate_exon	20988980	20989023	+	asmbl_2671	none	blat.proc3825164.chain_1566	1	STRG.1435.3,Trinity_GG_18143_c0_g1_i2,blat.proc3825164.chain_1567	3
scaffold_9	alt_acceptor	3913095	3913096	-	asmbl_54952,asmbl_54953	none	STRG.11010.2,STRG.11010.3	2	STRG.11010.1,Trinity_GG_6105_c0_g1_i1,Trinity_GG_6105_c0_g1_i2,blat.proc3825152.chain_3262,blat.proc3825152.chain_3263	5
scaffold_13	ends_in_intron	16184250	16184250	-	asmbl_10276	none	Trinity_GG_9289_c0_g1_i3,blat.proc3825156.chain_1423	2	STRG.16664.1,STRG.16664.2,blat.proc3825156.chain_1422,blat.proc3825156.chain_1425	4
scaffold_8	alt_donor	17747507	17747508	-	asmbl_52489	none	STRG.10690.2	1	STRG.10690.1	1
scaffold_13	alt_donor	520272	520273	+	asmbl_10484,asmbl_10485,asmbl_10486,asmbl_10487,asmbl_10489,asmbl_10490	none	STRG.15449.1,STRG.15449.2,STRG.15449.3,STRG.15449.5,Trinity_GG_25810_c0_g1_i15,Trinity_GG_25810_c0_g1_i5,blat.proc3825172.chain_179,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_185,blat.proc3825172.chain_188	12	STRG.15449.4,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_184,blat.proc3825172.chain_186	4
scaffold_3	starts_in_intron	13990433	13990433	+	asmbl_40481	none	Trinity_GG_19386_c0_g1_i3,blat.proc3825166.chain_188	2	STRG.3744.1,STRG.3744.2,STRG.3744.4,STRG.3744.5,Trinity_GG_19386_c0_g1_i2,blat.proc3825166.chain_189,blat.proc3825166.chain_190,blat.proc3825166.chain_191	8
scaffold_2	retained_intron	16404516	16404596	+	asmbl_25136	none	STRG.2582.2,Trinity_GG_18776_c0_g1_i1,blat.proc3825164.chain_2871	3	STRG.2582.1,blat.proc3825164.chain_2870,blat.proc3825164.chain_2872	3
scaffold_18	ends_in_intron	13654243	13654243	-	asmbl_20183	none	blat.proc3825158.chain_2604	1	STRG.21800.1,STRG.21800.2,blat.proc3825158.chain_2602,blat.proc3825158.chain_2603	4
scaffold_15	alt_acceptor	1422577	1422578	-	asmbl_13950	none	STRG.17953.1,blat.proc3825156.chain_2745	2	STRG.17953.2	1
scaffold_1	retained_exon	16096473	16096565	-	asmbl_975	none	blat.proc3825148.chain_1118	1	STRG.1129.1,STRG.1129.2,STRG.1129.3,STRG.1129.4,blat.proc3825148.chain_1117,blat.proc3825148.chain_1120	6
scaffold_4	starts_in_intron	6303583	6303583	+	asmbl_41393	none	Trinity_GG_19783_c0_g2_i1	1	STRG.4503.1,STRG.4503.2,Trinity_GG_19783_c0_g1_i1,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_919,blat.proc3825166.chain_920,blat.proc3825166.chain_921,blat.proc3825166.chain_922	10
scaffold_16	spliced_intron	4597484	4597636	-	asmbl_17063	none	STRG.19244.1,blat.proc3825158.chain_399	2	blat.proc3825158.chain_400	1
scaffold_369	retained_intron	1752	1811	+	asmbl_41052	none	STRG.30301.1	1	STRG.30301.2	1
scaffold_2	alt_acceptor	888310	888311	+	asmbl_24132,asmbl_24133,asmbl_24134	none	STRG.1565.2,STRG.1565.3,STRG.1565.5	3	STRG.1565.1,Trinity_GG_18210_c0_g1_i1,blat.proc3825164.chain_1711	3
scaffold_1	retained_exon	15281137	15281282	+	asmbl_2439	none	STRG.1094.2	1	STRG.1094.1	1
scaffold_7	alt_acceptor	11873315	11873316	-	asmbl_51174	none	STRG.9306.1	1	STRG.9306.2,Trinity_GG_5251_c0_g1_i3,blat.proc3825152.chain_1679	3
scaffold_28	retained_intron	7421777	7421872	-	asmbl_38400	none	blat.proc3825162.chain_2991	1	STRG.29817.1,blat.proc3825162.chain_2992	2
scaffold_13	spliced_intron	220491	221239	+	asmbl_10461	none	STRG.15430.1,blat.proc3825172.chain_174	2	blat.proc3825172.chain_173,blat.proc3825172.chain_175	2
scaffold_8	alt_acceptor	2690449	2690450	+	asmbl_52735,asmbl_52736	none	STRG.9810.1,STRG.9810.2	2	STRG.9810.3	1
scaffold_1	alternate_exon	19006746	19007065	+	asmbl_2573	none	STRG.1324.2	1	STRG.1324.3	1
scaffold_12	alt_donor	10018786	10018787	-	asmbl_8717	none	blat.proc3825154.chain_3475	1	STRG.14977.1,blat.proc3825154.chain_3474	2
scaffold_18	retained_intron	9804343	9804380	-	asmbl_20090,asmbl_20092	none	STRG.21590.1,STRG.21590.2,Trinity_GG_12073_c0_g1_i1,Trinity_GG_12073_c0_g1_i2,blat.proc3825158.chain_2507,blat.proc3825158.chain_2508	6	STRG.21590.3	1
scaffold_11	alt_donor	13254373	13254374	-	asmbl_7122,asmbl_7123	none	STRG.14198.2,STRG.14198.3,blat.proc3825154.chain_2767,blat.proc3825154.chain_2771	4	blat.proc3825154.chain_2770	1
scaffold_16	alt_donor	1878641	1878642	+	asmbl_16104	none	STRG.19108.1	1	STRG.19108.2	1
scaffold_11	starts_in_intron	10976661	10976661	-	asmbl_7006	none	blat.proc3825154.chain_2623	1	STRG.14063.1,STRG.14063.2,blat.proc3825154.chain_2622,blat.proc3825154.chain_2624	4
scaffold_1	spliced_intron	4927829	4928203	-	asmbl_228	none	STRG.307.1,Trinity_GG_156_c0_g1_i1	2	Trinity_GG_156_c0_g1_i2	1
scaffold_14	alt_donor	2850245	2850246	+	asmbl_11888	none	STRG.16882.1,Trinity_GG_26591_c0_g1_i1,blat.proc3825172.chain_1646	3	STRG.16882.2	1
scaffold_14	spliced_intron	7495217	7495629	+	asmbl_12166	none	STRG.17193.2,Trinity_GG_26725_c1_g1_i2,blat.proc3825172.chain_1882	3	STRG.17193.1,blat.proc3825172.chain_1881	2
scaffold_6	retained_intron	573670	573950	+	asmbl_46665	none	STRG.7115.1,Trinity_GG_21206_c0_g1_i1,blat.proc3825166.chain_3279	3	Trinity_GG_21206_c0_g1_i3,blat.proc3825166.chain_3278	2
scaffold_12	alt_acceptor	5042712	5042713	-	asmbl_8473,asmbl_8476	none	STRG.14681.1,blat.proc3825154.chain_3105,blat.proc3825154.chain_3106	3	STRG.14681.2	1
scaffold_8	starts_in_intron	1844516	1844516	+	asmbl_52713	none	blat.proc3825168.chain_2316	1	blat.proc3825168.chain_2317	1
scaffold_10	alt_acceptor	6526312	6526313	-	asmbl_4475	none	STRG.12478.1,blat.proc3825154.chain_1017	2	STRG.12478.2	1
scaffold_16	retained_intron	154458	154650	-	asmbl_16841	none	Trinity_GG_10685_c0_g1_i4	1	STRG.19010.1,Trinity_GG_10685_c0_g1_i8	2
scaffold_24	alternate_exon	4454239	4455335	+	asmbl_32200	none	STRG.26606.2,blat.proc3825176.chain_3500	2	STRG.26606.1	1
scaffold_9	retained_intron	5468453	5468592	+	asmbl_54045	none	STRG.11124.1,blat.proc3825168.chain_3637	2	STRG.11124.2,Trinity_GG_23505_c0_g1_i2,blat.proc3825168.chain_3638	3
scaffold_20	retained_exon	3036835	3036908	+	asmbl_26515	none	STRG.23039.1,blat.proc3825176.chain_209	2	STRG.23039.3,Trinity_GG_30010_c0_g1_i1,blat.proc3825176.chain_208	3
scaffold_10	ends_in_intron	16532185	16532185	+	asmbl_3720,asmbl_3724	none	blat.proc3825162.chain_3356,blat.proc3825170.chain_1652	2	STRG.13128.1,STRG.13128.3,blat.proc3825170.chain_1651,blat.proc3825170.chain_1653	4
scaffold_4	starts_in_intron	4124299	4124299	-	asmbl_42503	none	blat.proc3825150.chain_566	1	STRG.4324.1,STRG.4324.2,blat.proc3825150.chain_564,blat.proc3825150.chain_565	4
scaffold_25	starts_in_intron	638055	638055	-	asmbl_33993	none	blat.proc3825162.chain_463	1	STRG.27114.3	1
scaffold_18	spliced_intron	8865903	8866098	-	asmbl_20030,asmbl_20031,asmbl_20033	none	blat.proc3825158.chain_2358,blat.proc3825158.chain_2360,blat.proc3825158.chain_2361	3	STRG.21549.1,Trinity_GG_11998_c1_g1_i1,blat.proc3825158.chain_2364	3
scaffold_8	spliced_intron	4859675	4859836	-	asmbl_51812	none	STRG.9948.1,Trinity_GG_5566_c0_g1_i2,blat.proc3825152.chain_2240	3	blat.proc3825152.chain_2241	1
scaffold_7	spliced_intron	15232602	15232777	+	asmbl_50415	none	STRG.9539.2	1	STRG.9539.1,blat.proc3825168.chain_2053,blat.proc3825168.chain_2054	3
scaffold_28	spliced_intron	5238035	5238122	-	asmbl_38268,asmbl_38270,asmbl_38273	none	STRG.29676.2,Trinity_GG_16598_c0_g1_i6,blat.proc3825162.chain_2781,blat.proc3825162.chain_2787,blat.proc3825162.chain_2788	5	STRG.29676.1,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785	3
scaffold_14	spliced_intron	11139409	11139486	-	asmbl_13449	none	STRG.17450.2,blat.proc3825156.chain_2251	2	blat.proc3825156.chain_2250	1
scaffold_10	spliced_intron	13282361	13283807	-	asmbl_4865	none	STRG.12922.2	1	STRG.12922.1,STRG.12922.4,Trinity_GG_7237_c3_g1_i1,Trinity_GG_7237_c4_g1_i1,blat.proc3825154.chain_1550,blat.proc3825154.chain_1553,blat.proc3825154.chain_1554	7
scaffold_12	alternate_exon	13403504	13403998	-	asmbl_8948	none	blat.proc3825156.chain_12	1	STRG.15219.3,blat.proc3825156.chain_10	2
scaffold_23	alt_donor	3237217	3237218	+	asmbl_31428,asmbl_31430	none	STRG.25761.1,STRG.25761.2,blat.proc3825176.chain_2713	3	STRG.25761.3,blat.proc3825176.chain_2714	2
scaffold_21	alt_donor	7816522	7816523	-	asmbl_27859	none	STRG.24318.2	1	STRG.24318.1,blat.proc3825160.chain_1359	2
scaffold_2	alt_donor	3708060	3708061	+	asmbl_24304	none	STRG.1800.3	1	STRG.1800.1	1
scaffold_11	retained_intron	4759832	4760026	-	asmbl_6630	none	Trinity_GG_7573_c0_g2_i1,blat.proc3825154.chain_2099	2	STRG.13575.1,blat.proc3825154.chain_2095,blat.proc3825154.chain_2096,blat.proc3825154.chain_2097	4
scaffold_15	starts_in_intron	5658699	5658699	+	asmbl_15218	none	blat.proc3825172.chain_2901	1	STRG.18258.1,blat.proc3825172.chain_2902	2
scaffold_13	ends_in_intron	2291586	2291586	+	asmbl_10589	none	blat.proc3825172.chain_248	1	STRG.15546.1	1
scaffold_8	ends_in_intron	12854837	12854837	+	asmbl_53345	none	blat.proc3825168.chain_3042	1	STRG.10470.1,blat.proc3825168.chain_3043	2
scaffold_21	alternate_exon	9836863	9836975	-	asmbl_27970	none	STRG.24440.3	1	STRG.24440.1	1
scaffold_1	alt_acceptor	17524067	17524068	-	asmbl_1035	none	STRG.1211.2	1	STRG.1212.1,Trinity_GG_632_c0_g1_i1,blat.proc3825148.chain_1200	3
scaffold_10	spliced_intron	4715798	4715921	-	asmbl_4307	none	STRG.12295.1,blat.proc3825154.chain_858	2	STRG.12295.3	1
scaffold_1	ends_in_intron	11454250	11454250	-	asmbl_620	none	Trinity_GG_362_c0_g1_i5,blat.proc3825148.chain_670	2	STRG.759.1,STRG.759.2,blat.proc3825148.chain_673,blat.proc3825148.chain_674	4
scaffold_2	alt_acceptor	7881629	7881630	+	asmbl_24581,asmbl_24583,asmbl_24586,asmbl_24587	none	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i20,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291,blat.proc3825164.chain_2292,blat.proc3825164.chain_2293	9	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2
scaffold_9	alt_acceptor	2487129	2487130	+	asmbl_53837	none	STRG.10891.1,blat.proc3825168.chain_3392	2	STRG.10891.2	1
scaffold_27	starts_in_intron	6196501	6196501	+	asmbl_36383,asmbl_36386	none	Trinity_GG_33374_c0_g1_i2,blat.proc3825178.chain_2228,blat.proc3825178.chain_2229	3	STRG.29014.1,STRG.29014.3,STRG.29014.4	3
scaffold_25	retained_intron	3737855	3737965	-	asmbl_34153	none	blat.proc3825162.chain_680	1	STRG.27326.1,blat.proc3825162.chain_681	2
scaffold_14	ends_in_intron	7353504	7353504	-	asmbl_13197	none	blat.proc3825156.chain_1897	1	STRG.17178.1	1
scaffold_8	alt_donor	10041128	10041129	-	asmbl_52091	none	STRG.10261.3,blat.proc3825152.chain_2485	2	STRG.10261.2,blat.proc3825152.chain_2484	2
scaffold_5	retained_intron	9704095	9704702	-	asmbl_44296,asmbl_44298	none	STRG.6293.3,Trinity_GG_3551_c0_g1_i17,blat.proc3825150.chain_2501	3	blat.proc3825150.chain_2502,blat.proc3825150.chain_2503	2
scaffold_21	skipped_exon	8971393	8974150	-	asmbl_27945,asmbl_27948	none	STRG.24409.2,blat.proc3825160.chain_1567,blat.proc3825160.chain_1568	3	STRG.24409.1,STRG.24409.3,blat.proc3825160.chain_1566,blat.proc3825160.chain_1569	4
scaffold_10	retained_intron	12840971	12841059	-	asmbl_4831	none	blat.proc3825154.chain_1485	1	STRG.12879.1,blat.proc3825154.chain_1484	2
scaffold_11	skipped_exon	11930763	11931395	-	asmbl_7042	none	STRG.14177.2	1	STRG.14177.3,STRG.14177.4	2
scaffold_5	alt_acceptor	189975	189976	+	asmbl_45087	none	STRG.5587.1	1	STRG.5587.3,STRG.5587.4,STRG.5587.5	3
scaffold_20	skipped_exon	425819	428277	+	asmbl_26351	none	STRG.22745.1	1	STRG.22745.2	1
scaffold_14	alt_acceptor	12632053	12632054	-	asmbl_13587,asmbl_13588	none	STRG.17582.5,blat.proc3825156.chain_2420	2	STRG.17582.1,STRG.17582.3,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	7
scaffold_19	alt_donor	12007695	12007696	-	asmbl_22442	none	STRG.22522.1	1	Trinity_GG_12527_c0_g1_i2,Trinity_GG_12527_c0_g1_i4,blat.proc3825158.chain_3280,blat.proc3825158.chain_3281	4
scaffold_21	alternate_exon	258141	258187	-	asmbl_27291	none	blat.proc3825160.chain_807	1	STRG.23725.2,STRG.23725.5,STRG.23725.6,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_811,blat.proc3825160.chain_812,blat.proc3825160.chain_813	14
scaffold_13	starts_in_intron	8796621	8796621	-	asmbl_9974	none	Trinity_GG_9079_c0_g1_i1,blat.proc3825156.chain_1056	2	Trinity_GG_9079_c0_g1_i3,blat.proc3825156.chain_1058	2
scaffold_7	starts_in_intron	8216701	8216701	-	asmbl_50985	none	blat.proc3825152.chain_1447	1	STRG.9056.1,blat.proc3825152.chain_1446	2
scaffold_19	alt_donor	856362	856363	+	asmbl_21217,asmbl_21218,asmbl_21219	none	STRG.21878.2,Trinity_GG_29375_c1_g1_i1,blat.proc3825174.chain_2853,blat.proc3825174.chain_2854,blat.proc3825174.chain_2855	5	STRG.21878.1	1
scaffold_1	alt_acceptor	12334913	12334914	-	asmbl_706	none	STRG.849.2,blat.proc3825148.chain_831	2	blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839	3
scaffold_2	alternate_exon	889047	889458	+	asmbl_24131	none	blat.proc3825164.chain_1715	1	blat.proc3825164.chain_1714	1
scaffold_1	alt_acceptor	22370558	22370559	+	asmbl_2688,asmbl_2689,asmbl_2690	none	STRG.1491.1,STRG.1491.3,STRG.1491.5	3	STRG.1491.2,STRG.1491.4	2
scaffold_1	retained_exon	10949746	10950201	+	asmbl_2038,asmbl_2041	none	STRG.715.3,blat.proc3825164.chain_863,blat.proc3825164.chain_864	3	STRG.715.1,blat.proc3825164.chain_858	2
scaffold_1	ends_in_intron	7791280	7791280	+	asmbl_1922	none	blat.proc3825164.chain_691	1	STRG.538.1,blat.proc3825164.chain_688,blat.proc3825164.chain_689	3
scaffold_2	spliced_intron	897724	898862	+	asmbl_24147,asmbl_24149,asmbl_24151	none	STRG.1569.1,Trinity_GG_18211_c0_g1_i3,Trinity_GG_18211_c0_g1_i4,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721,blat.proc3825164.chain_1722	6	STRG.1569.2,STRG.1569.3,Trinity_GG_18211_c0_g1_i5,blat.proc3825164.chain_1718	4
scaffold_6	skipped_exon	13249787	13250829	-	asmbl_48902	none	STRG.8085.2	1	STRG.8085.1	1
scaffold_14	retained_intron	10717597	10717700	+	asmbl_12344	none	Trinity_GG_26881_c0_g1_i1,blat.proc3825172.chain_2152	2	STRG.17426.1,STRG.17426.2,Trinity_GG_26881_c0_g1_i2,blat.proc3825172.chain_2153	4
scaffold_13	starts_in_intron	11152746	11152746	-	asmbl_10069	none	blat.proc3825156.chain_1097	1	STRG.16279.1,blat.proc3825156.chain_1096	2
scaffold_10	retained_exon	1425721	1425808	+	asmbl_2939	none	blat.proc3825170.chain_761	1	STRG.12016.1,STRG.12016.4,STRG.12016.5,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_760,blat.proc3825170.chain_763	6
scaffold_3	alternate_exon	6183003	6183322	-	asmbl_38909	none	STRG.3266.3,blat.proc3825148.chain_3118	2	STRG.3266.1,STRG.3266.2,STRG.3266.4,blat.proc3825148.chain_3119,blat.proc3825148.chain_3120,blat.proc3825148.chain_3122,blat.proc3825148.chain_3124,blat.proc3825148.chain_3125	8
scaffold_17	spliced_intron	8731691	8732397	+	asmbl_19021	none	STRG.20488.2,blat.proc3825174.chain_1292	2	STRG.20488.1,blat.proc3825174.chain_1293	2
scaffold_5	spliced_intron	9085892	9085964	+	asmbl_45599,asmbl_45600,asmbl_45602,asmbl_45605,asmbl_45606,asmbl_45607	none	STRG.6247.1,STRG.6247.2,Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2474,blat.proc3825166.chain_2476,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2480	8	blat.proc3825166.chain_2475,blat.proc3825166.chain_2481	2
scaffold_3	alt_acceptor	8211839	8211840	-	asmbl_39023	none	STRG.3399.2,blat.proc3825148.chain_3243	2	STRG.3399.1	1
scaffold_24	alt_acceptor	9116745	9116746	+	asmbl_32510	none	blat.proc3825178.chain_173	1	STRG.26942.1,blat.proc3825178.chain_172,blat.proc3825178.chain_175,blat.proc3825178.chain_177,blat.proc3825178.chain_178	5
scaffold_6	ends_in_intron	3225941	3225941	+	asmbl_46816	none	STRG.7331.3,blat.proc3825166.chain_3453	2	STRG.7331.2,blat.proc3825166.chain_3449,blat.proc3825166.chain_3450	3
scaffold_4	starts_in_intron	13762817	13762817	-	asmbl_43006	none	blat.proc3825150.chain_1142	1	STRG.4997.3	1
scaffold_28	alt_acceptor	2595118	2595119	-	asmbl_38064	none	STRG.29435.3,blat.proc3825162.chain_2633	2	STRG.29435.1,STRG.29435.2,blat.proc3825162.chain_2632	3
scaffold_1	ends_in_intron	20741983	20741983	-	asmbl_1204	none	Trinity_GG_769_c2_g1_i1,blat.proc3825148.chain_1417	2	STRG.1420.1,blat.proc3825148.chain_1411,blat.proc3825148.chain_1413,blat.proc3825148.chain_1414	4
scaffold_25	retained_intron	7905436	7905495	-	asmbl_34416	none	STRG.27617.1	1	blat.proc3825162.chain_919	1
scaffold_4	spliced_intron	1441879	1442446	-	asmbl_42377	none	STRG.4179.2	1	STRG.4179.1,Trinity_GG_2335_c0_g2_i1,blat.proc3825150.chain_419	3
scaffold_18	spliced_intron	1382455	1382684	-	asmbl_19613	none	STRG.21024.1,blat.proc3825158.chain_1981	2	STRG.21024.2,blat.proc3825158.chain_1982	2
scaffold_14	alt_donor	2389021	2389022	-	asmbl_12948	none	STRG.16855.3	1	STRG.16855.1,STRG.16855.2	2
scaffold_8	spliced_intron	5857393	5857551	+	asmbl_52909,asmbl_52910,asmbl_52911	none	STRG.10001.1,STRG.10001.3,STRG.10001.4,Trinity_GG_22886_c0_g1_i1,Trinity_GG_22886_c0_g1_i2,Trinity_GG_22886_c0_g1_i4,Trinity_GG_22886_c0_g1_i5,blat.proc3825168.chain_2571,blat.proc3825168.chain_2573,blat.proc3825168.chain_2574,blat.proc3825168.chain_2575	11	STRG.10001.2,Trinity_GG_22886_c0_g1_i3,blat.proc3825168.chain_2572	3
scaffold_26	alt_acceptor	6319317	6319318	-	asmbl_35673	none	STRG.28328.2	1	STRG.28328.1,STRG.28328.3,blat.proc3825162.chain_1491,blat.proc3825162.chain_1492	4
scaffold_18	ends_in_intron	1617505	1617505	+	asmbl_20369	none	blat.proc3825174.chain_1981	1	STRG.21051.1,blat.proc3825174.chain_1977,blat.proc3825174.chain_1980	3
scaffold_17	skipped_exon	3607	4095	+	asmbl_18533	none	STRG.19887.1,Trinity_GG_28200_c0_g1_i2,blat.proc3825174.chain_774	3	STRG.19887.2,Trinity_GG_28200_c0_g1_i1,blat.proc3825174.chain_773	3
scaffold_2	retained_exon	13445854	13446506	-	asmbl_23516,asmbl_23517	none	STRG.2363.1,blat.proc3825148.chain_2360,blat.proc3825148.chain_2363	3	blat.proc3825148.chain_2364	1
scaffold_12	skipped_exon	7422321	7422854	-	asmbl_8584	none	STRG.14825.2,blat.proc3825154.chain_3338	2	STRG.14825.3,blat.proc3825154.chain_3337	2
scaffold_6	alt_acceptor	11482859	11482860	+	asmbl_47330,asmbl_47332	none	STRG.7943.3,blat.proc3825168.chain_310	2	STRG.7943.1,STRG.7943.2,STRG.7943.4,blat.proc3825168.chain_309,blat.proc3825168.chain_312,blat.proc3825168.chain_314	6
scaffold_5	retained_exon	5738079	5738209	+	asmbl_45366	none	blat.proc3825166.chain_2135	1	STRG.5992.3,blat.proc3825166.chain_2133	2
scaffold_28	spliced_intron	6926010	6926670	-	asmbl_38365	none	STRG.29766.2,blat.proc3825162.chain_2952	2	STRG.29766.1,Trinity_GG_16699_c0_g1_i2,blat.proc3825162.chain_2953	3
scaffold_3	alternate_exon	5928686	5929748	-	asmbl_38873	none	blat.proc3825148.chain_3098	1	blat.proc3825148.chain_3099	1
scaffold_8	retained_intron	11278090	11278313	-	asmbl_52144	none	Trinity_GG_5759_c0_g1_i4,blat.proc3825152.chain_2595	2	STRG.10347.1,STRG.10347.2,STRG.10347.3,blat.proc3825152.chain_2593,blat.proc3825152.chain_2594,blat.proc3825152.chain_2596	6
scaffold_23	retained_intron	10990900	10990994	-	asmbl_31188	none	blat.proc3825160.chain_3397	1	STRG.26306.2	1
scaffold_15	ends_in_intron	15176008	15176008	+	asmbl_15738	none	blat.proc3825172.chain_3533	1	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3519,blat.proc3825172.chain_3520,blat.proc3825172.chain_3521,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3525,blat.proc3825172.chain_3528,blat.proc3825172.chain_3529,blat.proc3825172.chain_3530,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535,blat.proc3825172.chain_3536	16
scaffold_21	starts_in_intron	2246852	2246852	-	asmbl_27442	none	Trinity_GG_13301_c0_g1_i1,blat.proc3825160.chain_1000	2	STRG.23842.1,blat.proc3825160.chain_999	2
scaffold_7	retained_intron	11987431	11987607	-	asmbl_51180	none	STRG.9304.1,blat.proc3825152.chain_1642	2	STRG.9304.2,blat.proc3825152.chain_1643	2
scaffold_3	alternate_exon	17455367	17455412	+	asmbl_40681	none	STRG.3978.1	1	STRG.3978.5	1
scaffold_17	alt_donor	7969525	7969526	-	asmbl_18067,asmbl_18068	none	STRG.20416.2,STRG.20416.3	2	STRG.20416.1,blat.proc3825158.chain_1467	2
scaffold_6	alternate_exon	15103886	15105286	-	asmbl_49054	none	STRG.8276.2	1	STRG.8276.1,blat.proc3825152.chain_695	2
scaffold_6	alt_donor	15944850	15944851	+	asmbl_47680,asmbl_47681	none	STRG.8324.2,STRG.8324.3	2	STRG.8324.4,blat.proc3825152.chain_740	2
scaffold_8	alternate_exon	23208	23294	-	asmbl_51685	none	STRG.9705.2	1	STRG.9705.1,blat.proc3825152.chain_2048,blat.proc3825152.chain_2050	3
scaffold_2	spliced_intron	7876359	7876445	+	asmbl_24582,asmbl_24586,asmbl_24587,asmbl_24588	none	STRG.2082.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i14,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2287,blat.proc3825164.chain_2289,blat.proc3825164.chain_2290,blat.proc3825164.chain_2292	9	Trinity_GG_18501_c0_g1_i18,blat.proc3825164.chain_2294	2
scaffold_23	retained_exon	5578418	5578543	+	asmbl_31577,asmbl_31584	none	STRG.25933.2,blat.proc3825176.chain_2837,blat.proc3825176.chain_2840	3	STRG.25933.1,STRG.25933.3,STRG.25933.5,blat.proc3825176.chain_2838,blat.proc3825176.chain_2839,blat.proc3825176.chain_2841	6
scaffold_22	alt_acceptor	7671307	7671308	-	asmbl_29418	none	STRG.25113.1,blat.proc3825160.chain_2201	2	STRG.25113.2	1
scaffold_13	skipped_exon	1361221	1361994	-	asmbl_9403	none	STRG.15507.2	1	STRG.15507.1,blat.proc3825156.chain_345	2
scaffold_6	alternate_exon	12990049	12998579	-	asmbl_48856,asmbl_48857,asmbl_48858,asmbl_48859	none	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,Trinity_GG_4595_c0_g1_i2,blat.proc3825152.chain_489,blat.proc3825152.chain_490,blat.proc3825152.chain_492,blat.proc3825152.chain_495	9	STRG.8068.5,blat.proc3825152.chain_491,blat.proc3825152.chain_496	3
scaffold_10	starts_in_intron	11869560	11869560	-	asmbl_4791	none	STRG.12823.1,blat.proc3825154.chain_1432	2	STRG.12823.3	1
scaffold_4	spliced_intron	16480998	16481293	-	asmbl_43176	none	STRG.5225.3,blat.proc3825150.chain_1403	2	STRG.5225.2,blat.proc3825150.chain_1406	2
scaffold_2	alt_acceptor	11474984	11474985	-	asmbl_23454	none	STRG.2267.3,Trinity_GG_1239_c0_g1_i3,blat.proc3825148.chain_2245	3	STRG.2267.1,STRG.2267.2,Trinity_GG_1239_c0_g1_i1,Trinity_GG_1239_c0_g1_i2,blat.proc3825148.chain_2244,blat.proc3825148.chain_2246	6
scaffold_18	starts_in_intron	2823322	2823322	+	asmbl_20427	none	STRG.21142.3,blat.proc3825174.chain_2049	2	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2047,blat.proc3825174.chain_2052,blat.proc3825174.chain_2056	5
scaffold_4	spliced_intron	19141911	19141983	+	asmbl_42125	none	STRG.5502.1,blat.proc3825166.chain_1785	2	blat.proc3825166.chain_1786	1
scaffold_27	starts_in_intron	390986	390986	-	asmbl_36687	none	blat.proc3825162.chain_1811	1	STRG.28565.1,blat.proc3825162.chain_1812	2
scaffold_15	spliced_intron	14663329	14663440	+	asmbl_15695	none	STRG.18882.1	1	Trinity_GG_27665_c0_g1_i2,blat.proc3825172.chain_3505	2
scaffold_26	alternate_exon	5861387	5862690	+	asmbl_35049	none	STRG.28294.1,blat.proc3825178.chain_1390	2	STRG.28294.2	1
scaffold_28	retained_intron	9225948	9226024	-	asmbl_38497,asmbl_38498	none	STRG.29966.1,Trinity_GG_16810_c0_g1_i1,Trinity_GG_16810_c0_g1_i2,blat.proc3825162.chain_3141,blat.proc3825162.chain_3142	5	STRG.29966.2	1
scaffold_2	retained_intron	14190516	14191409	-	asmbl_23565,asmbl_23571	none	Trinity_GG_1338_c0_g1_i3,blat.proc3825148.chain_2412,blat.proc3825148.chain_2415	3	STRG.2416.1,STRG.2416.2,STRG.2416.3,Trinity_GG_1338_c0_g1_i8,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2416	7
scaffold_4	retained_intron	4433714	4433862	+	asmbl_41267	none	STRG.4342.1,blat.proc3825166.chain_791	2	STRG.4342.4	1
scaffold_5	alt_donor	16285430	16285431	+	asmbl_46077,asmbl_46078	none	Trinity_GG_21030_c0_g1_i3,Trinity_GG_21030_c0_g1_i6,blat.proc3825166.chain_2983,blat.proc3825166.chain_2984	4	STRG.6827.2,Trinity_GG_21030_c0_g1_i5,blat.proc3825166.chain_2982	3
scaffold_17	alt_acceptor	13959232	13959233	+	asmbl_19369	none	STRG.20882.2,blat.proc3825174.chain_1775	2	STRG.20882.1,blat.proc3825174.chain_1771,blat.proc3825174.chain_1773,blat.proc3825174.chain_1774	4
scaffold_11	retained_intron	8074409	8074589	-	asmbl_6834	none	blat.proc3825154.chain_2336	1	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335	3
scaffold_3	alt_donor	12906245	12906246	-	asmbl_39236	none	STRG.3674.2,blat.proc3825148.chain_3546	2	STRG.3674.1,blat.proc3825148.chain_3547	2
scaffold_3	alt_acceptor	6041931	6041932	-	asmbl_38879,asmbl_38881,asmbl_38882	none	STRG.3259.1,STRG.3259.6,STRG.3259.7	3	STRG.3259.3,STRG.3259.4	2
scaffold_2	spliced_intron	14193481	14193569	-	asmbl_23570	none	blat.proc3825148.chain_2414	1	STRG.2416.1,STRG.2416.2,STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2415	5
scaffold_27	retained_intron	5049880	5050708	-	asmbl_36981,asmbl_36983	none	STRG.28938.1,STRG.28938.5,Trinity_GG_16227_c0_g1_i2,blat.proc3825162.chain_2175	4	STRG.28938.4	1
scaffold_3	starts_in_intron	2967520	2967520	-	asmbl_38749	none	blat.proc3825148.chain_2916	1	STRG.3052.1,STRG.3052.2,blat.proc3825148.chain_2918	3
scaffold_18	alt_acceptor	13470788	13470789	+	asmbl_21024	none	blat.proc3825174.chain_2820	1	Trinity_GG_29359_c1_g1_i3,blat.proc3825174.chain_2818,blat.proc3825174.chain_2819	3
scaffold_13	retained_intron	738856	739027	+	asmbl_10513	none	STRG.15461.2,blat.proc3825172.chain_191	2	STRG.15461.1,blat.proc3825172.chain_193	2
scaffold_5	alt_acceptor	9579547	9579548	-	asmbl_44290	none	blat.proc3825150.chain_2476	1	STRG.6278.1	1
scaffold_4	spliced_intron	4104440	4104704	+	asmbl_41232	none	STRG.4316.2	1	STRG.4316.1,Trinity_GG_19673_c0_g1_i6,blat.proc3825166.chain_696,blat.proc3825166.chain_697	4
scaffold_11	ends_in_intron	8398056	8398056	+	asmbl_5765	none	blat.proc3825170.chain_2389	1	STRG.13857.1,STRG.13857.2,STRG.13857.3,blat.proc3825170.chain_2390,blat.proc3825170.chain_2391,blat.proc3825170.chain_2392,blat.proc3825170.chain_2393,blat.proc3825170.chain_2394	8
scaffold_14	alt_donor	15565676	15565677	+	asmbl_12621	none	blat.proc3825172.chain_2534	1	STRG.17796.1,STRG.17796.2,STRG.17796.3,blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	6
scaffold_17	spliced_intron	6975317	6976246	-	asmbl_18015,asmbl_18016	none	STRG.20360.1,blat.proc3825158.chain_1411,blat.proc3825158.chain_1413	3	STRG.20360.2,blat.proc3825158.chain_1412	2
scaffold_14	alt_acceptor	7259000	7259001	-	asmbl_13182	none	STRG.17163.1	1	STRG.17163.2	1
scaffold_5	ends_in_intron	47914	47914	-	asmbl_43751	none	Trinity_GG_3140_c0_g1_i2,blat.proc3825150.chain_1798	2	STRG.5569.1,blat.proc3825150.chain_1799	2
scaffold_13	skipped_exon	517905	520155	+	asmbl_10485	none	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3	STRG.15449.2,STRG.15449.4,STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_184	9
scaffold_6	alt_donor	11655	11656	-	asmbl_48013	none	blat.proc3825150.chain_3174	1	STRG.7057.1	1
scaffold_19	ends_in_intron	10067967	10067967	+	asmbl_21614	none	STRG.22393.2,blat.proc3825174.chain_3294	2	STRG.22393.1,STRG.22393.3,blat.proc3825174.chain_3292,blat.proc3825174.chain_3293,blat.proc3825174.chain_3296	5
scaffold_15	skipped_exon	14633432	14633944	-	asmbl_14733	none	STRG.18877.2,blat.proc3825156.chain_3749	2	STRG.18877.1,blat.proc3825156.chain_3750	2
scaffold_23	alt_donor	362463	362464	-	asmbl_30590,asmbl_30597	none	STRG.25564.4,Trinity_GG_14303_c0_g1_i4,blat.proc3825160.chain_2721,blat.proc3825160.chain_2726	4	blat.proc3825160.chain_2722	1
scaffold_20	starts_in_intron	440915	440915	+	asmbl_26358	none	Trinity_GG_29871_c0_g1_i2,blat.proc3825174.chain_3734	2	STRG.22744.1,blat.proc3825174.chain_3733	2
scaffold_13	starts_in_intron	8805932	8805932	-	asmbl_9979,asmbl_9982	none	STRG.16153.4,Trinity_GG_9086_c0_g1_i7,blat.proc3825156.chain_1069	3	blat.proc3825156.chain_1065,blat.proc3825156.chain_1066,blat.proc3825156.chain_1067,blat.proc3825156.chain_1070	4
scaffold_11	spliced_intron	9020369	9020489	-	asmbl_6902,asmbl_6905,asmbl_6906,asmbl_6907	none	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406,blat.proc3825154.chain_2407	5	blat.proc3825154.chain_2408	1
scaffold_9	alt_acceptor	11812455	11812456	-	asmbl_55313	none	STRG.11497.2,blat.proc3825152.chain_3704	2	STRG.11497.1,blat.proc3825152.chain_3703	2
scaffold_4	alternate_exon	7657675	7659040	-	asmbl_42729	none	STRG.4597.2,blat.proc3825150.chain_835	2	STRG.4597.1	1
scaffold_15	alternate_exon	9986735	9988642	+	asmbl_15437	none	STRG.18511.1,Trinity_GG_27463_c1_g1_i2,blat.proc3825172.chain_3174	3	STRG.18511.2,Trinity_GG_27463_c1_g1_i1,blat.proc3825172.chain_3173	3
scaffold_13	spliced_intron	2270204	2270425	-	asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	8	STRG.15548.3,STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_400	10
scaffold_3	spliced_intron	14763888	14764213	-	asmbl_39417,asmbl_39418,asmbl_39420	none	STRG.3820.2,STRG.3820.3,Trinity_GG_2082_c0_g1_i1,blat.proc3825148.chain_3686	4	STRG.3820.4,Trinity_GG_2082_c0_g1_i2,Trinity_GG_2082_c0_g1_i3,blat.proc3825148.chain_3684,blat.proc3825148.chain_3685	5
scaffold_4	alt_donor	8410576	8410577	+	asmbl_41559,asmbl_41560	none	STRG.4671.2,Trinity_GG_19884_c0_g1_i2,blat.proc3825166.chain_1088	3	STRG.4671.1,Trinity_GG_19884_c0_g1_i3,blat.proc3825166.chain_1087	3
scaffold_27	spliced_intron	3130050	3130150	+	asmbl_36188,asmbl_36190,asmbl_36191	none	STRG.28805.3,Trinity_GG_33197_c0_g1_i3,blat.proc3825178.chain_1837,blat.proc3825178.chain_1839	4	Trinity_GG_33197_c0_g1_i2,blat.proc3825178.chain_1838	2
scaffold_3	alternate_exon	18108424	18111408	-	asmbl_39589	none	STRG.4023.1,blat.proc3825150.chain_171	2	STRG.4023.2	1
scaffold_12	retained_exon	10605626	10605683	+	asmbl_7945	none	STRG.15036.1,blat.proc3825170.chain_3579	2	STRG.15036.2,STRG.15036.3,blat.proc3825170.chain_3576,blat.proc3825170.chain_3580	4
scaffold_5	alt_donor	5047311	5047312	+	asmbl_45329	none	STRG.5958.3,blat.proc3825166.chain_2123	2	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126,blat.proc3825166.chain_2129	5
scaffold_9	alternate_exon	571265	571526	+	asmbl_53771	none	STRG.10788.1,Trinity_GG_23309_c2_g1_i1	2	STRG.10788.2	1
scaffold_23	starts_in_intron	3594621	3594621	+	asmbl_31448	none	Trinity_GG_31536_c3_g1_i1,blat.proc3825176.chain_2727	2	STRG.25780.1,blat.proc3825176.chain_2722	2
scaffold_5	retained_exon	15683095	15683232	+	asmbl_46004,asmbl_46007	none	STRG.6761.1,blat.proc3825166.chain_2859,blat.proc3825166.chain_2862	3	blat.proc3825166.chain_2861	1
scaffold_23	starts_in_intron	3438690	3438690	+	asmbl_31437	none	blat.proc3825176.chain_2672	1	STRG.25762.1,blat.proc3825176.chain_2673,blat.proc3825176.chain_2674	3
scaffold_18	ends_in_intron	7794442	7794442	-	asmbl_19980	none	Trinity_GG_12016_c0_g1_i3,blat.proc3825158.chain_2389	2	STRG.21484.1,STRG.21484.2,Trinity_GG_12016_c0_g1_i1,Trinity_GG_12016_c0_g1_i2,blat.proc3825158.chain_2388,blat.proc3825158.chain_2390	6
scaffold_5	skipped_exon	9083030	9083968	+	asmbl_45602,asmbl_45604	none	blat.proc3825166.chain_2474,blat.proc3825166.chain_2481	2	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2476,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479	6
scaffold_18	skipped_exon	9168049	9170424	+	asmbl_20878,asmbl_20881	none	STRG.21559.2,STRG.21559.3,Trinity_GG_29198_c0_g1_i2,blat.proc3825174.chain_2557	4	STRG.21559.1,Trinity_GG_29198_c0_g1_i3,blat.proc3825174.chain_2559	3
scaffold_2	alt_acceptor	14449211	14449212	-	asmbl_23602	none	blat.proc3825148.chain_2351	1	STRG.2451.1,blat.proc3825148.chain_2352	2
scaffold_22	starts_in_intron	3040427	3040427	+	asmbl_29951	none	blat.proc3825176.chain_1849	1	STRG.24790.1,blat.proc3825176.chain_1851	2
scaffold_11	ends_in_intron	15633316	15633316	+	asmbl_6117	none	blat.proc3825170.chain_2833	1	STRG.14299.1,STRG.14299.2,blat.proc3825170.chain_2834,blat.proc3825170.chain_2835	4
scaffold_28	spliced_intron	5249878	5250166	-	asmbl_38276	none	STRG.29678.1,blat.proc3825162.chain_2789	2	STRG.29678.2,blat.proc3825162.chain_2790	2
scaffold_19	spliced_intron	3668736	3668829	-	asmbl_22116,asmbl_22117,asmbl_22118,asmbl_22119	none	STRG.22046.1,STRG.22046.2,Trinity_GG_12309_c0_g1_i1,Trinity_GG_12309_c0_g1_i3,Trinity_GG_12309_c0_g1_i5,Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2893,blat.proc3825158.chain_2894,blat.proc3825158.chain_2897,blat.proc3825158.chain_2899	10	Trinity_GG_12309_c0_g1_i4,blat.proc3825158.chain_2895,blat.proc3825158.chain_2898	3
scaffold_19	retained_intron	10791584	10791697	+	asmbl_21655	none	STRG.22420.1,Trinity_GG_29691_c0_g1_i1,blat.proc3825174.chain_3401	3	STRG.22420.2	1
scaffold_1	alt_acceptor	19045251	19045252	+	asmbl_2581	none	STRG.1335.5	1	STRG.1335.1,STRG.1335.7,Trinity_GG_18101_c0_g1_i2	3
scaffold_6	ends_in_intron	5441471	5441471	+	asmbl_46952	none	Trinity_GG_21417_c0_g1_i2,blat.proc3825166.chain_3693	2	STRG.7512.1,STRG.7512.2,Trinity_GG_21417_c0_g1_i1,Trinity_GG_21417_c0_g1_i3,blat.proc3825166.chain_3692,blat.proc3825166.chain_3694	6
scaffold_23	alt_donor	6988879	6988880	-	asmbl_30996,asmbl_30997	none	STRG.26022.1,STRG.26022.2,blat.proc3825160.chain_3166,blat.proc3825160.chain_3167	4	blat.proc3825160.chain_3168	1
scaffold_20	spliced_intron	5923146	5923230	-	asmbl_25788,asmbl_25790,asmbl_25791	none	STRG.23199.2,STRG.23199.3,STRG.23199.4,blat.proc3825160.chain_276,blat.proc3825160.chain_278,blat.proc3825160.chain_281	6	STRG.23199.1,blat.proc3825160.chain_279,blat.proc3825160.chain_280	3
scaffold_1	retained_intron	9515894	9516390	-	asmbl_540	none	STRG.637.2,blat.proc3825148.chain_627	2	STRG.637.4,Trinity_GG_338_c0_g1_i2,blat.proc3825148.chain_629	3
scaffold_15	spliced_intron	10768425	10768689	+	asmbl_15462,asmbl_15463,asmbl_15464,asmbl_15465	none	STRG.18562.4,blat.proc3825172.chain_3210,blat.proc3825172.chain_3211,blat.proc3825172.chain_3212,blat.proc3825172.chain_3213	5	blat.proc3825172.chain_3216	1
scaffold_15	retained_exon	12039326	12039514	+	asmbl_15518,asmbl_15519	none	STRG.18663.1,blat.proc3825172.chain_3250	2	STRG.18663.2	1
scaffold_20	alt_acceptor	2365715	2365716	+	asmbl_26482	none	STRG.22969.1	1	STRG.22969.2	1
scaffold_11	retained_intron	1983288	1983379	-	asmbl_6465	none	blat.proc3825154.chain_1941	1	STRG.13360.1,STRG.13360.2,blat.proc3825154.chain_1942,blat.proc3825154.chain_1944	4
scaffold_28	starts_in_intron	8133431	8133431	+	asmbl_37726	none	Trinity_GG_33857_c0_g1_i2,blat.proc3825178.chain_3038	2	STRG.29878.1,blat.proc3825178.chain_3039	2
scaffold_27	alt_acceptor	2881621	2881622	+	asmbl_36143,asmbl_36144,asmbl_36145,asmbl_36146	none	STRG.28771.2,STRG.28771.3,blat.proc3825178.chain_1938,blat.proc3825178.chain_1939,blat.proc3825178.chain_1940,blat.proc3825178.chain_1943	6	STRG.28771.1,blat.proc3825178.chain_1941	2
scaffold_1	alternate_exon	12930302	12930378	+	asmbl_2280	none	STRG.928.1	1	STRG.928.2,Trinity_GG_17884_c0_g1_i2,blat.proc3825164.chain_1102	3
scaffold_7	retained_intron	2589217	2589309	+	asmbl_49659	none	STRG.8700.1	1	blat.proc3825168.chain_1142	1
scaffold_7	ends_in_intron	10283278	10283278	+	asmbl_50104	none	blat.proc3825168.chain_1711	1	STRG.9205.1,Trinity_GG_22418_c0_g2_i2,blat.proc3825168.chain_1708,blat.proc3825168.chain_1710	4
scaffold_13	retained_intron	2270956	2271084	-	asmbl_9438,asmbl_9441,asmbl_9442,asmbl_9443	none	STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_400	9	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_397,blat.proc3825156.chain_398,blat.proc3825156.chain_399	11
scaffold_14	retained_intron	11759003	11759212	-	asmbl_13528,asmbl_13529	none	STRG.17520.1,STRG.17520.3,blat.proc3825156.chain_2319,blat.proc3825156.chain_2320	4	STRG.17520.2,blat.proc3825156.chain_2321	2
scaffold_3	spliced_intron	4275917	4276088	+	asmbl_39990	none	STRG.3125.1,blat.proc3825164.chain_3362	2	STRG.3125.2,blat.proc3825164.chain_3363	2
scaffold_20	alt_acceptor	7104772	7104773	-	asmbl_25877	none	STRG.23282.3,Trinity_GG_12993_c0_g2_i1,blat.proc3825160.chain_374,blat.proc3825160.chain_377	4	STRG.23282.2,blat.proc3825160.chain_375	2
scaffold_20	alternate_exon	9946243	9946346	+	asmbl_26913	none	STRG.23538.2,blat.proc3825176.chain_705	2	STRG.23538.1,blat.proc3825176.chain_704	2
scaffold_17	ends_in_intron	13467478	13467478	-	asmbl_18369	none	STRG.20824.2,blat.proc3825158.chain_1771	2	STRG.20824.1,blat.proc3825158.chain_1770	2
scaffold_5	alt_donor	19354735	19354736	-	asmbl_44903	none	Trinity_GG_3924_c1_g1_i2,blat.proc3825150.chain_3159	2	STRG.7034.2,Trinity_GG_3924_c1_g1_i1,blat.proc3825150.chain_3158	3
scaffold_4	starts_in_intron	10593363	10593363	-	asmbl_42859	none	Trinity_GG_2623_c0_g1_i4	1	STRG.4804.1	1
scaffold_7	skipped_exon	17610958	17612226	+	asmbl_50487	none	STRG.9612.2	1	STRG.9612.1,blat.proc3825168.chain_2069	2
scaffold_22	alt_acceptor	9340091	9340092	-	asmbl_29538	none	STRG.25279.2	1	STRG.25279.3	1
scaffold_3	alternate_exon	6231219	6231252	-	asmbl_38931	none	STRG.3267.5	1	STRG.3267.1,STRG.3267.2,STRG.3267.4,blat.proc3825148.chain_3065	4
scaffold_18	starts_in_intron	3876802	3876802	+	asmbl_20489	none	Trinity_GG_28980_c1_g1_i4,blat.proc3825174.chain_2142	2	STRG.21200.1,blat.proc3825174.chain_2141	2
scaffold_5	alt_acceptor	13301483	13301484	+	asmbl_45876	none	STRG.6578.1	1	STRG.6578.2	1
scaffold_566	retained_intron	3943	4024	+	asmbl_46582	none	blat.proc3825172.chain_736	1	blat.proc3825172.chain_735	1
scaffold_14	alt_acceptor	11639565	11639566	+	asmbl_12397	none	STRG.17500.1	1	STRG.17500.2	1
scaffold_4	retained_intron	10872269	10872362	-	asmbl_42864	none	blat.proc3825150.chain_987	1	STRG.4808.1,blat.proc3825150.chain_986,blat.proc3825150.chain_988,blat.proc3825150.chain_989	4
scaffold_23	retained_exon	9119518	9119574	-	asmbl_31092	none	STRG.26159.1,blat.proc3825160.chain_3237	2	blat.proc3825160.chain_3236	1
scaffold_26	ends_in_intron	1860581	1860581	-	asmbl_35415	none	blat.proc3825162.chain_1232	1	STRG.27934.1,STRG.27934.2	2
scaffold_13	spliced_intron	8235692	8236213	-	asmbl_9958,asmbl_9960,asmbl_9961	none	STRG.16116.1,blat.proc3825156.chain_1036,blat.proc3825156.chain_1037,blat.proc3825156.chain_1038	4	blat.proc3825156.chain_1035	1
scaffold_4	spliced_intron	10447539	10447632	-	asmbl_42848,asmbl_42849,asmbl_42850,asmbl_42851,asmbl_42852,asmbl_42854	none	STRG.4796.1,STRG.4796.2,blat.proc3825150.chain_912,blat.proc3825150.chain_913,blat.proc3825150.chain_914,blat.proc3825150.chain_915,blat.proc3825150.chain_916	7	blat.proc3825150.chain_917	1
scaffold_7	starts_in_intron	15267762	15267762	+	asmbl_50433	none	blat.proc3825168.chain_2125	1	STRG.9546.1,STRG.9546.2,STRG.9546.3,blat.proc3825168.chain_2120,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123	6
scaffold_26	alt_donor	4455561	4455562	+	asmbl_34905	none	STRG.28164.1,blat.proc3825178.chain_1244	2	STRG.28164.2,STRG.28164.3,blat.proc3825178.chain_1245	3
scaffold_12	alt_donor	13167440	13167441	-	asmbl_8928	none	STRG.15204.1	1	STRG.15204.2	1
scaffold_18	alt_donor	7554244	7554245	-	asmbl_19955,asmbl_19958	none	STRG.21458.1,STRG.21458.2,blat.proc3825158.chain_2374	3	STRG.21458.3	1
scaffold_27	alternate_exon	8934864	8936061	-	asmbl_37121	none	STRG.29138.1	1	STRG.29138.2	1
scaffold_16	spliced_intron	8875480	8875517	-	asmbl_17261	none	STRG.19506.2	1	STRG.19506.1,blat.proc3825158.chain_640	2
scaffold_13	starts_in_intron	12095537	12095537	+	asmbl_11330	none	blat.proc3825172.chain_1147	1	STRG.16346.1,blat.proc3825172.chain_1148	2
scaffold_5	ends_in_intron	17250191	17250191	+	asmbl_46156	none	Trinity_GG_21081_c0_g1_i2,blat.proc3825166.chain_3067	2	STRG.6899.1,Trinity_GG_21081_c0_g1_i1,blat.proc3825166.chain_3066	3
scaffold_20	spliced_intron	7858103	7858245	-	asmbl_25931,asmbl_25932,asmbl_25933	none	STRG.23336.1,STRG.23336.2,STRG.23336.3,blat.proc3825160.chain_416,blat.proc3825160.chain_417	5	STRG.23336.4,blat.proc3825160.chain_415	2
scaffold_28	retained_exon	538460	538587	-	asmbl_37909,asmbl_37910,asmbl_37911	none	STRG.29277.1,STRG.29277.2,blat.proc3825162.chain_2442,blat.proc3825162.chain_2443	4	STRG.29277.3	1
scaffold_4	retained_exon	3230322	3230370	-	asmbl_42417	none	STRG.4248.2	1	STRG.4248.1,blat.proc3825150.chain_458	2
scaffold_18	starts_in_intron	5909451	5909451	+	asmbl_20618	none	Trinity_GG_29070_c0_g1_i3,blat.proc3825174.chain_2323	2	STRG.21344.1,Trinity_GG_29070_c0_g1_i1,blat.proc3825174.chain_2324	3
scaffold_13	retained_intron	6949079	6949233	-	asmbl_9818,asmbl_9819	none	STRG.15984.1,STRG.15984.6,Trinity_GG_8951_c0_g1_i5	3	STRG.15984.3	1
scaffold_11	alternate_exon	9724432	9724606	+	asmbl_5891	none	STRG.13987.2,Trinity_GG_25005_c0_g1_i1,blat.proc3825170.chain_2506	3	STRG.13987.1,blat.proc3825170.chain_2507	2
scaffold_3	starts_in_intron	14312211	14312211	-	asmbl_39354	none	blat.proc3825148.chain_3676	1	STRG.3771.1,STRG.3771.2,STRG.3771.3,Trinity_GG_2080_c0_g1_i2,blat.proc3825148.chain_3677,blat.proc3825148.chain_3678	6
scaffold_23	alt_acceptor	8204485	8204486	+	asmbl_31768	none	STRG.26129.2	1	STRG.26129.1,blat.proc3825176.chain_3002,blat.proc3825176.chain_3003,blat.proc3825176.chain_3004	4
scaffold_16	alt_acceptor	8591307	8591308	+	asmbl_16420,asmbl_16421,asmbl_16422	none	STRG.19490.1,STRG.19490.7,blat.proc3825174.chain_375	3	STRG.19490.2,STRG.19490.3,STRG.19490.8,blat.proc3825174.chain_371,blat.proc3825174.chain_372,blat.proc3825174.chain_373	6
scaffold_17	retained_intron	12187281	12187379	+	asmbl_19274	none	STRG.20753.2,blat.proc3825174.chain_1619	2	STRG.20753.3,blat.proc3825174.chain_1620	2
scaffold_23	alternate_exon	4100534	4104950	-	asmbl_30833	none	STRG.25826.2	1	STRG.25826.3,blat.proc3825160.chain_3030,blat.proc3825160.chain_3032	3
scaffold_3	starts_in_intron	11774394	11774394	-	asmbl_39187	none	Trinity_GG_1967_c0_g1_i2,blat.proc3825148.chain_3482	2	STRG.3609.1,STRG.3609.2,blat.proc3825148.chain_3483	3
scaffold_17	alternate_exon	4001327	4002747	+	asmbl_18754,asmbl_18759	none	STRG.20160.3,blat.proc3825174.chain_1032	2	STRG.20160.1,STRG.20160.2,STRG.20160.4,blat.proc3825174.chain_1031,blat.proc3825174.chain_1033,blat.proc3825174.chain_1034,blat.proc3825174.chain_1035	7
scaffold_17	alt_donor	9485542	9485543	+	asmbl_19091,asmbl_19096	none	STRG.20572.2,blat.proc3825174.chain_1444,blat.proc3825174.chain_1450	3	STRG.20572.1,STRG.20572.3,blat.proc3825174.chain_1445,blat.proc3825174.chain_1446,blat.proc3825174.chain_1449	5
scaffold_24	skipped_exon	6726453	6728217	-	asmbl_32966	none	STRG.26723.2,blat.proc3825162.chain_99	2	STRG.26723.1,blat.proc3825162.chain_100,blat.proc3825162.chain_95,blat.proc3825162.chain_98	4
scaffold_18	alt_acceptor	7947579	7947580	-	asmbl_19993	none	STRG.21494.1	1	STRG.21494.2,STRG.21494.3,STRG.21494.4,blat.proc3825158.chain_2402,blat.proc3825158.chain_2403,blat.proc3825158.chain_2404	6
scaffold_12	retained_intron	7499766	7499934	-	asmbl_8588	none	STRG.14829.1,blat.proc3825154.chain_3326	2	STRG.14829.3,blat.proc3825154.chain_3327	2
scaffold_7	spliced_intron	8508720	8510079	+	asmbl_50000	none	STRG.9078.3,blat.proc3825168.chain_1607	2	STRG.9078.2,blat.proc3825168.chain_1605,blat.proc3825168.chain_1609	3
scaffold_28	alt_acceptor	6515478	6515479	-	asmbl_38350	none	blat.proc3825162.chain_2874	1	STRG.29749.2	1
scaffold_15	starts_in_intron	8166671	8166671	+	asmbl_15321	none	Trinity_GG_27363_c0_g1_i1,blat.proc3825172.chain_2998	2	STRG.18391.1,STRG.18391.2,blat.proc3825172.chain_2999,blat.proc3825172.chain_3002	4
scaffold_11	alt_donor	1824791	1824792	-	asmbl_6450	none	STRG.13344.1	1	STRG.13344.2	1
scaffold_15	starts_in_intron	7185685	7185685	-	asmbl_14281	none	blat.proc3825156.chain_3032	1	STRG.18309.1,blat.proc3825156.chain_3033,blat.proc3825156.chain_3034	3
scaffold_28	spliced_intron	2199808	2199837	+	asmbl_37350	none	STRG.29391.3	1	STRG.29391.1,STRG.29391.2,blat.proc3825178.chain_2548,blat.proc3825178.chain_2549,blat.proc3825178.chain_2550	5
scaffold_16	starts_in_intron	10972162	10972162	-	asmbl_17321	none	blat.proc3825158.chain_662	1	STRG.19645.1,STRG.19645.2,blat.proc3825158.chain_660,blat.proc3825158.chain_661,blat.proc3825158.chain_663	5
scaffold_16	alt_donor	4692298	4692299	-	asmbl_17069	none	STRG.19252.2	1	STRG.19252.1,blat.proc3825158.chain_427	2
scaffold_9	spliced_intron	14039157	14039465	+	asmbl_54517	none	STRG.11665.3,Trinity_GG_23791_c0_g1_i4,blat.proc3825170.chain_423	3	Trinity_GG_23791_c0_g1_i1,blat.proc3825170.chain_425	2
scaffold_12	alt_acceptor	13396705	13396706	-	asmbl_8943,asmbl_8948	none	STRG.15219.3,blat.proc3825156.chain_10,blat.proc3825156.chain_12	3	STRG.15219.5	1
scaffold_5	ends_in_intron	14126276	14126276	-	asmbl_44591	none	blat.proc3825150.chain_2773	1	STRG.6623.1	1
scaffold_5	alt_donor	17226444	17226445	+	asmbl_46153	none	STRG.6896.2	1	STRG.6896.1,blat.proc3825166.chain_3076,blat.proc3825166.chain_3077	3
scaffold_5	ends_in_intron	8070839	8070839	+	asmbl_45522	none	STRG.6170.3,blat.proc3825166.chain_2346	2	STRG.6170.1,STRG.6170.2,blat.proc3825166.chain_2347	3
scaffold_23	ends_in_intron	7514026	7514026	-	asmbl_31036	none	blat.proc3825160.chain_3242	1	STRG.26071.1,STRG.26071.2,STRG.26071.3,blat.proc3825160.chain_3240,blat.proc3825160.chain_3241	5
scaffold_21	retained_exon	256485	256741	-	asmbl_27283,asmbl_27284,asmbl_27288,asmbl_27295,asmbl_27296	none	STRG.23725.1,STRG.23725.2,STRG.23725.6,blat.proc3825160.chain_804,blat.proc3825160.chain_806	5	STRG.23725.5,blat.proc3825160.chain_811,blat.proc3825160.chain_812	3
scaffold_4	spliced_intron	4095323	4095811	+	asmbl_41217,asmbl_41221	none	STRG.4315.4,blat.proc3825166.chain_703	2	STRG.4315.2,blat.proc3825166.chain_705,blat.proc3825166.chain_709	3
scaffold_3	ends_in_intron	14258722	14258722	+	asmbl_40503	none	STRG.3766.3,blat.proc3825166.chain_256	2	STRG.3766.1,STRG.3766.2,blat.proc3825166.chain_252,blat.proc3825166.chain_254	4
scaffold_1	alt_donor	13927208	13927209	-	asmbl_861,asmbl_862	none	STRG.1000.1,STRG.1000.2	2	STRG.1000.3,blat.proc3825148.chain_1010	2
scaffold_18	ends_in_intron	5802762	5802762	+	asmbl_20608	none	STRG.21326.1,Trinity_GG_29056_c0_g1_i2,blat.proc3825174.chain_2277	3	STRG.21326.2	1
scaffold_1	starts_in_intron	14202254	14202254	+	asmbl_2346	none	Trinity_GG_17929_c0_g1_i9,blat.proc3825164.chain_1193	2	STRG.1008.1,STRG.1008.2,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i5,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1190,blat.proc3825164.chain_1191,blat.proc3825164.chain_1192	9
scaffold_14	alt_acceptor	399237	399238	+	asmbl_11747,asmbl_11748,asmbl_11750	none	STRG.16734.1,STRG.16734.2,STRG.16734.4,Trinity_GG_26526_c0_g1_i23,blat.proc3825172.chain_1504	5	STRG.16734.3,Trinity_GG_26526_c0_g1_i10,Trinity_GG_26526_c0_g1_i18,blat.proc3825172.chain_1507,blat.proc3825172.chain_1514	5
scaffold_21	alternate_exon	8528489	8530889	+	asmbl_28817	none	blat.proc3825176.chain_1459,blat.proc3825176.chain_1460	2	blat.proc3825176.chain_1467	1
scaffold_5	alternate_exon	4773758	4773944	-	asmbl_44011	none	STRG.5941.1	1	STRG.5941.2,blat.proc3825150.chain_2142	2
scaffold_7	spliced_intron	13015452	13015641	-	asmbl_51278	none	STRG.9415.1	1	Trinity_GG_5313_c0_g2_i1,blat.proc3825152.chain_1811	2
scaffold_19	alt_acceptor	1498487	1498488	+	asmbl_21242,asmbl_21245,asmbl_21246	none	STRG.21912.2,STRG.21912.3,STRG.21912.4,blat.proc3825174.chain_2936	4	STRG.21912.1,STRG.21912.5	2
scaffold_21	starts_in_intron	4749182	4749182	+	asmbl_28533	none	Trinity_GG_30636_c0_g1_i1,blat.proc3825176.chain_1254	2	STRG.24028.1,blat.proc3825176.chain_1253	2
scaffold_464	retained_intron	3524	3609	+	asmbl_43727	none	STRG.30345.3,blat.proc3825178.chain_3424	2	STRG.30345.1,blat.proc3825178.chain_3423	2
scaffold_11	skipped_exon	3497358	3498240	+	asmbl_5438	none	blat.proc3825170.chain_2034	1	blat.proc3825170.chain_2033	1
scaffold_23	starts_in_intron	2994855	2994855	-	asmbl_30769,asmbl_30772	none	STRG.25748.3,blat.proc3825160.chain_2952	2	STRG.25748.1,STRG.25748.4,blat.proc3825160.chain_2955	3
scaffold_25	starts_in_intron	4522150	4522150	-	asmbl_34202	none	STRG.27387.2,blat.proc3825162.chain_759	2	STRG.27387.1,blat.proc3825162.chain_760,blat.proc3825162.chain_761	3
scaffold_27	starts_in_intron	927877	927877	-	asmbl_36716	none	blat.proc3825162.chain_1792	1	STRG.28587.1,STRG.28587.2,Trinity_GG_15981_c0_g1_i3,Trinity_GG_15981_c0_g1_i5,blat.proc3825162.chain_1790,blat.proc3825162.chain_1791	6
scaffold_13	alt_donor	16190411	16190412	-	asmbl_10279	none	STRG.16666.2	1	STRG.16666.1,Trinity_GG_9290_c0_g1_i1,blat.proc3825156.chain_1426	3
scaffold_13	alt_acceptor	2072260	2072261	+	asmbl_10580	none	STRG.15540.2	1	STRG.15540.1,STRG.15540.3,blat.proc3825172.chain_305	3
scaffold_1	alternate_exon	2748147	2748315	-	asmbl_129	none	STRG.176.4,Trinity_GG_110_c0_g1_i6	2	STRG.176.1,STRG.176.3,blat.proc3825148.chain_183	3
scaffold_11	retained_intron	6395847	6395959	-	asmbl_6707,asmbl_6710	none	STRG.13697.1,STRG.13697.3,Trinity_GG_7653_c0_g1_i2,blat.proc3825154.chain_2241	4	STRG.13697.2,STRG.13697.4,Trinity_GG_7653_c0_g1_i3,blat.proc3825154.chain_2242	4
scaffold_26	alt_donor	3789751	3789752	+	asmbl_34832	none	STRG.28067.3	1	STRG.28067.1,STRG.28067.2	2
scaffold_506	alt_donor	2365	2366	+	asmbl_46501,asmbl_46503,asmbl_46505	none	STRG.30354.1,STRG.30354.2,blat.proc3825178.chain_3451,blat.proc3825178.chain_3453	4	blat.proc3825178.chain_3450,blat.proc3825178.chain_3454	2
scaffold_1	alt_acceptor	10858472	10858473	+	asmbl_2031	none	STRG.711.1,blat.proc3825164.chain_850	2	STRG.711.3	1
scaffold_2	alternate_exon	923764	924731	+	asmbl_24157,asmbl_24159	none	STRG.1570.4,blat.proc3825164.chain_1629	2	STRG.1570.5	1
scaffold_7	retained_intron	4936495	4936637	+	asmbl_49776	none	blat.proc3825168.chain_1352	1	STRG.8852.1,STRG.8852.2,STRG.8852.3,STRG.8852.4,STRG.8852.5,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1350	11
scaffold_23	alt_acceptor	9956318	9956319	-	asmbl_31114,asmbl_31117	none	STRG.26203.1,blat.proc3825160.chain_3297,blat.proc3825160.chain_3298	3	STRG.26203.2,STRG.26203.3	2
scaffold_15	retained_intron	15434376	15435512	-	asmbl_14782,asmbl_14783	none	STRG.18932.1,STRG.18932.3,Trinity_GG_10599_c0_g1_i5,Trinity_GG_10599_c0_g1_i6,blat.proc3825156.chain_3730,blat.proc3825156.chain_3732	6	STRG.18932.2,blat.proc3825156.chain_3731,blat.proc3825156.chain_3733	3
scaffold_8	alt_donor	10058979	10058980	-	asmbl_52095	none	STRG.10265.1,blat.proc3825152.chain_2447	2	STRG.10265.2,blat.proc3825152.chain_2448	2
scaffold_5	skipped_exon	16018055	16018649	-	asmbl_44741	none	blat.proc3825150.chain_2865	1	STRG.6788.1,blat.proc3825150.chain_2866	2
scaffold_14	retained_intron	7495217	7495625	+	asmbl_12168	none	STRG.17193.1,blat.proc3825172.chain_1881	2	STRG.17193.4	1
scaffold_4	alt_donor	4425804	4425805	-	asmbl_42514	none	STRG.4343.3	1	STRG.4343.1,STRG.4343.2,blat.proc3825150.chain_580,blat.proc3825150.chain_581	4
scaffold_23	alt_acceptor	10990921	10990922	-	asmbl_31185	none	STRG.26306.1,blat.proc3825160.chain_3398	2	STRG.26306.2	1
scaffold_11	alt_donor	8192908	8192909	-	asmbl_6850	none	STRG.13829.2,Trinity_GG_7742_c0_g1_i1,blat.proc3825154.chain_2394	3	STRG.13829.1,Trinity_GG_7742_c0_g1_i3,blat.proc3825154.chain_2395	3
scaffold_10	alt_donor	716681	716682	-	asmbl_3989	none	STRG.11957.4	1	STRG.11957.1,blat.proc3825154.chain_545	2
scaffold_9	retained_intron	2808854	2809003	-	asmbl_54884,asmbl_54885	none	STRG.10923.1,STRG.10923.3,Trinity_GG_6059_c0_g2_i3,blat.proc3825152.chain_3168	4	blat.proc3825152.chain_3167	1
scaffold_12	starts_in_intron	11691711	11691711	-	asmbl_8823	none	Trinity_GG_8432_c0_g1_i1	1	STRG.15092.1,blat.proc3825154.chain_3613	2
scaffold_10	ends_in_intron	4051311	4051311	+	asmbl_3102	none	Trinity_GG_24107_c0_g1_i3,blat.proc3825170.chain_955	2	STRG.12245.1,STRG.12245.2,Trinity_GG_24107_c0_g1_i1,Trinity_GG_24107_c0_g1_i2,blat.proc3825170.chain_953,blat.proc3825170.chain_954	6
scaffold_3	alt_donor	18937824	18937825	+	asmbl_40749,asmbl_40751	none	STRG.4067.1,STRG.4067.3	2	STRG.4067.2,STRG.4067.4	2
scaffold_13	spliced_intron	6686158	6686374	+	asmbl_10961	none	STRG.15961.1,Trinity_GG_26071_c0_g1_i1,blat.proc3825172.chain_694	3	blat.proc3825172.chain_695	1
scaffold_23	spliced_intron	4312110	4313057	+	asmbl_31495	none	blat.proc3825176.chain_2773	1	blat.proc3825176.chain_2776	1
scaffold_7	spliced_intron	13552407	13554063	-	asmbl_51311	none	STRG.9465.1,blat.proc3825152.chain_1802	2	blat.proc3825152.chain_1803,blat.proc3825152.chain_1804	2
scaffold_11	alt_donor	6714891	6714892	-	asmbl_6738,asmbl_6739	none	STRG.13716.4,Trinity_GG_7683_c0_g1_i2,blat.proc3825154.chain_2288	3	STRG.13716.1,STRG.13716.2,STRG.13716.5,STRG.13716.6,blat.proc3825154.chain_2286,blat.proc3825154.chain_2287	6
scaffold_23	alt_donor	7279761	7279762	-	asmbl_31026	none	STRG.26052.3	1	STRG.26052.2,blat.proc3825160.chain_3145	2
scaffold_19	alternate_exon	6832142	6832168	-	asmbl_22231	none	STRG.22199.1	1	STRG.22199.2	1
scaffold_8	ends_in_intron	8273000	8273000	-	asmbl_51951	none	Trinity_GG_5646_c0_g1_i4,blat.proc3825152.chain_2382	2	STRG.10106.1,STRG.10106.2,blat.proc3825152.chain_2381,blat.proc3825152.chain_2383	4
scaffold_23	retained_exon	7235231	7235352	+	asmbl_31682,asmbl_31683	none	STRG.26051.1,STRG.26051.2	2	STRG.26051.3	1
scaffold_8	retained_intron	4851222	4851393	+	asmbl_52859	none	blat.proc3825168.chain_2528	1	STRG.9951.1,blat.proc3825168.chain_2523	2
scaffold_27	ends_in_intron	3425159	3425159	+	asmbl_36203	none	STRG.28827.1	1	STRG.28827.2,blat.proc3825178.chain_1992	2
scaffold_6	alt_donor	13229094	13229095	+	asmbl_47504,asmbl_47506,asmbl_47508	none	STRG.8084.4,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_575	4	STRG.8084.1,blat.proc3825168.chain_573,blat.proc3825168.chain_574,blat.proc3825168.chain_576	4
scaffold_27	alt_donor	2629512	2629513	-	asmbl_36835	none	STRG.28738.2,blat.proc3825162.chain_1992	2	STRG.28738.3,blat.proc3825162.chain_1991	2
scaffold_8	ends_in_intron	4827274	4827274	-	asmbl_51803	none	Trinity_GG_5528_c2_g1_i1,blat.proc3825152.chain_2171	2	STRG.9947.1,STRG.9947.2,blat.proc3825152.chain_2166,blat.proc3825152.chain_2167	4
scaffold_25	retained_intron	8726199	8726312	+	asmbl_33762	none	blat.proc3825178.chain_772	1	STRG.27700.1,blat.proc3825178.chain_773	2
scaffold_11	retained_intron	9185416	9185879	-	asmbl_6920	none	Trinity_GG_7784_c0_g2_i1,blat.proc3825154.chain_2474	2	STRG.13963.2,Trinity_GG_7784_c0_g1_i1,blat.proc3825154.chain_2473	3
scaffold_17	starts_in_intron	14647374	14647374	-	asmbl_18443	none	Trinity_GG_11743_c0_g1_i2	1	STRG.20937.1,blat.proc3825158.chain_1903	2
scaffold_12	retained_intron	1383649	1383801	+	asmbl_7472	none	blat.proc3825170.chain_2968	1	STRG.14465.1,blat.proc3825170.chain_2967	2
scaffold_15	alt_donor	6064822	6064823	+	asmbl_15234	none	STRG.18270.2	1	STRG.18270.1,blat.proc3825172.chain_2956,blat.proc3825172.chain_2957	3
scaffold_19	retained_exon	857705	858188	+	asmbl_21218	none	STRG.21878.2,blat.proc3825174.chain_2853	2	STRG.21878.1,Trinity_GG_29375_c1_g1_i1,blat.proc3825174.chain_2855	3
scaffold_13	alt_acceptor	7081814	7081815	-	asmbl_9846	none	STRG.16003.1	1	STRG.16003.2,Trinity_GG_9004_c0_g1_i2,blat.proc3825156.chain_916	3
scaffold_6	alt_acceptor	3521002	3521003	+	asmbl_46847	none	STRG.7362.2	1	STRG.7362.1	1
scaffold_16	alt_donor	6096685	6096686	-	asmbl_17139,asmbl_17141	none	STRG.19342.2,blat.proc3825158.chain_501	2	STRG.19342.1,blat.proc3825158.chain_498,blat.proc3825158.chain_499,blat.proc3825158.chain_500,blat.proc3825158.chain_502	5
scaffold_6	spliced_intron	16876680	16876794	-	asmbl_49170	none	STRG.8405.2,blat.proc3825152.chain_872	2	STRG.8405.1,blat.proc3825152.chain_873	2
scaffold_8	alt_donor	18071080	18071081	+	asmbl_53521	none	STRG.10706.1,blat.proc3825168.chain_3219	2	STRG.10706.2	1
scaffold_17	alternate_exon	12369938	12370560	-	asmbl_18324	none	STRG.20776.4,Trinity_GG_11637_c1_g2_i1	2	STRG.20776.2	1
scaffold_24	alt_acceptor	6798947	6798948	-	asmbl_32980,asmbl_32981	none	STRG.26730.2,STRG.26730.3	2	STRG.26730.1,blat.proc3825162.chain_89,blat.proc3825162.chain_91,blat.proc3825162.chain_93	4
scaffold_24	retained_intron	1452902	1452990	+	asmbl_32078	none	STRG.26401.2,Trinity_GG_31891_c1_g1_i2,blat.proc3825176.chain_3350	3	STRG.26401.1	1
scaffold_13	spliced_intron	534534	534705	-	asmbl_9358,asmbl_9360,asmbl_9361,asmbl_9362,asmbl_9363	none	STRG.15447.1,STRG.15447.2,STRG.15447.3,Trinity_GG_8674_c0_g1_i1,Trinity_GG_8674_c0_g1_i2,Trinity_GG_8674_c0_g1_i6,blat.proc3825156.chain_326,blat.proc3825156.chain_327,blat.proc3825156.chain_328	9	Trinity_GG_8674_c0_g1_i3,blat.proc3825156.chain_325	2
scaffold_10	skipped_exon	2675455	2675702	+	asmbl_2992,asmbl_2993	none	STRG.12083.1,STRG.12083.2	2	STRG.12083.3,STRG.12083.4,blat.proc3825170.chain_832	3
scaffold_11	retained_intron	3486134	3486289	+	asmbl_5434	none	Trinity_GG_24723_c1_g1_i2,blat.proc3825170.chain_2024,blat.proc3825170.chain_2025	3	STRG.13477.1	1
scaffold_10	alt_acceptor	4035041	4035042	+	asmbl_3099	none	STRG.12244.1,blat.proc3825170.chain_963	2	STRG.12244.2	1
scaffold_5	retained_exon	4689531	4689818	-	asmbl_43992,asmbl_43994,asmbl_43995	none	blat.proc3825150.chain_2075,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084	3	STRG.5929.1,STRG.5929.4,blat.proc3825150.chain_2078,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2082,blat.proc3825150.chain_2085	7
scaffold_11	alt_acceptor	9832320	9832321	+	asmbl_5908	none	STRG.14008.4,Trinity_GG_25038_c0_g1_i10,blat.proc3825170.chain_2563	3	STRG.14008.1,STRG.14008.2,blat.proc3825170.chain_2556,blat.proc3825170.chain_2557,blat.proc3825170.chain_2565	5
scaffold_12	retained_exon	9687438	9687595	-	asmbl_8691,asmbl_8693	none	STRG.14946.1,STRG.14946.3,blat.proc3825154.chain_3467	3	STRG.14946.2,STRG.14946.4,Trinity_GG_8342_c0_g1_i3,blat.proc3825154.chain_3465	4
scaffold_9	alt_donor	6743445	6743446	-	asmbl_55072,asmbl_55075	none	STRG.11188.1,blat.proc3825152.chain_3414,blat.proc3825152.chain_3417	3	STRG.11188.2	1
scaffold_10	alternate_exon	3793933	3794011	-	asmbl_4232	none	blat.proc3825154.chain_783	1	STRG.12212.1,STRG.12212.3,blat.proc3825154.chain_782	3
scaffold_10	retained_intron	8347047	8347182	+	asmbl_3315	none	STRG.12601.1,blat.proc3825170.chain_1156	2	STRG.12601.2	1
scaffold_92	spliced_intron	7919	8075	+	asmbl_55828	none	STRG.30133.1,blat.proc3825178.chain_3256	2	STRG.30133.2	1
scaffold_19	spliced_intron	13224244	13224327	-	asmbl_22609,asmbl_22610,asmbl_22615,asmbl_22619,asmbl_22620,asmbl_22622	none	STRG.22653.1,STRG.22653.2,Trinity_GG_12588_c1_g1_i13,Trinity_GG_12588_c1_g1_i4,blat.proc3825158.chain_3428,blat.proc3825158.chain_3429,blat.proc3825158.chain_3430,blat.proc3825158.chain_3432,blat.proc3825158.chain_3434,blat.proc3825158.chain_3435	10	blat.proc3825158.chain_3433,blat.proc3825158.chain_3436	2
scaffold_8	alternate_exon	4851118	4851282	-	asmbl_51810	none	blat.proc3825152.chain_2226	1	STRG.9950.1,blat.proc3825152.chain_2223,blat.proc3825152.chain_2224,blat.proc3825152.chain_2225	4
scaffold_5	ends_in_intron	1249493	1249493	-	asmbl_43848	none	blat.proc3825150.chain_1929	1	STRG.5688.1,blat.proc3825150.chain_1932,blat.proc3825150.chain_1933	3
scaffold_20	retained_exon	651139	651339	-	asmbl_25506	none	STRG.22768.1,blat.proc3825158.chain_3613	2	STRG.22768.2	1
scaffold_20	ends_in_intron	11684066	11684066	+	asmbl_27088	none	Trinity_GG_30424_c1_g1_i1,blat.proc3825176.chain_888	2	STRG.23681.1,blat.proc3825176.chain_886	2
scaffold_21	starts_in_intron	8518132	8518132	-	asmbl_27927	none	STRG.24377.1,blat.proc3825160.chain_1557	2	STRG.24377.2,STRG.24377.3,blat.proc3825160.chain_1556,blat.proc3825160.chain_1559	4
scaffold_19	spliced_intron	13173213	13173287	+	asmbl_21865	none	STRG.22641.1,blat.proc3825174.chain_3605	2	blat.proc3825174.chain_3603,blat.proc3825174.chain_3604	2
scaffold_13	alt_donor	16183500	16183501	-	asmbl_10274,asmbl_10277	none	STRG.16664.1,blat.proc3825156.chain_1422,blat.proc3825156.chain_1424	3	STRG.16664.2,blat.proc3825156.chain_1425	2
scaffold_9	starts_in_intron	6966215	6966215	+	asmbl_54115	none	Trinity_GG_23541_c1_g1_i1,blat.proc3825168.chain_3717	2	STRG.11210.1,Trinity_GG_23541_c1_g1_i2,blat.proc3825168.chain_3718	3
scaffold_7	starts_in_intron	12541399	12541399	-	asmbl_51240,asmbl_51244	none	STRG.9363.3,blat.proc3825152.chain_1716	2	STRG.9363.1,STRG.9363.4,STRG.9363.5,blat.proc3825152.chain_1713,blat.proc3825152.chain_1717	5
scaffold_2	retained_intron	7894830	7894910	+	asmbl_24590,asmbl_24592,asmbl_24593,asmbl_24596	none	STRG.2085.2,STRG.2085.3,Trinity_GG_18472_c0_g1_i8,blat.proc3825164.chain_2202,blat.proc3825164.chain_2203,blat.proc3825164.chain_2205,blat.proc3825164.chain_2207,blat.proc3825164.chain_2210	8	STRG.2085.1,blat.proc3825164.chain_2201,blat.proc3825164.chain_2206,blat.proc3825164.chain_2208,blat.proc3825164.chain_2211	5
scaffold_8	retained_exon	13256459	13256547	+	asmbl_53351	none	STRG.10515.2,blat.proc3825168.chain_2953	2	STRG.10515.1,blat.proc3825168.chain_2952	2
scaffold_7	skipped_exon	1235897	1236590	+	asmbl_49603,asmbl_49604,asmbl_49607	none	STRG.8637.4,STRG.8637.7,Trinity_GG_22033_c0_g1_i5	3	STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072,blat.proc3825168.chain_1074,blat.proc3825168.chain_1079	9
scaffold_7	ends_in_intron	4513574	4513574	+	asmbl_49740	none	blat.proc3825168.chain_1276	1	STRG.8828.1,Trinity_GG_22152_c0_g2_i1,blat.proc3825168.chain_1274,blat.proc3825168.chain_1275	4
scaffold_20	spliced_intron	1469911	1470058	-	asmbl_25573,asmbl_25576,asmbl_25577	none	STRG.22868.3,blat.proc3825158.chain_3736,blat.proc3825158.chain_3737	3	STRG.22868.1,Trinity_GG_12770_c1_g1_i7,blat.proc3825158.chain_3738,blat.proc3825158.chain_3740	4
scaffold_6	spliced_intron	14900185	14900520	+	asmbl_47647	none	STRG.8266.3,blat.proc3825168.chain_753	2	STRG.8266.1,Trinity_GG_21865_c0_g1_i3,blat.proc3825168.chain_751	3
scaffold_5	skipped_exon	11630266	11631086	-	asmbl_44418	none	blat.proc3825150.chain_2643	1	blat.proc3825150.chain_2641,blat.proc3825150.chain_2642	2
scaffold_22	alternate_exon	6124092	6127862	+	asmbl_30096	none	STRG.24968.4,Trinity_GG_31147_c1_g1_i7,blat.proc3825176.chain_2125	3	STRG.24968.7	1
scaffold_2	alt_acceptor	15488567	15488568	+	asmbl_25052,asmbl_25054,asmbl_25055	none	STRG.2506.1,STRG.2506.3,blat.proc3825164.chain_2792,blat.proc3825164.chain_2793	4	STRG.2506.2,STRG.2506.4,blat.proc3825164.chain_2791,blat.proc3825164.chain_2794	4
scaffold_3	alternate_exon	14921916	14922134	-	asmbl_39432	none	STRG.3834.2,blat.proc3825148.chain_3702	2	STRG.3834.1,blat.proc3825148.chain_3701	2
scaffold_1	spliced_intron	14354987	14355171	-	asmbl_902	none	blat.proc3825148.chain_1040	1	Trinity_GG_547_c0_g1_i3,blat.proc3825148.chain_1036,blat.proc3825148.chain_1037,blat.proc3825148.chain_1038,blat.proc3825148.chain_1039	5
scaffold_6	ends_in_intron	12994820	12994820	-	asmbl_48865	none	blat.proc3825152.chain_488	1	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,blat.proc3825152.chain_492,blat.proc3825152.chain_495	6
scaffold_11	starts_in_intron	14505076	14505076	+	asmbl_6083	none	Trinity_GG_25161_c1_g1_i3,blat.proc3825170.chain_2777	2	STRG.14245.2	1
scaffold_9	skipped_exon	644461	645690	+	asmbl_53784	none	STRG.10793.4	1	STRG.10793.1,STRG.10793.2,STRG.10793.3,blat.proc3825168.chain_3345	4
scaffold_6	alt_acceptor	11450	11451	-	asmbl_48013	none	blat.proc3825150.chain_3174	1	STRG.7057.1	1
scaffold_23	alt_acceptor	1189765	1189766	+	asmbl_31317	none	blat.proc3825176.chain_2591	1	STRG.25599.1,blat.proc3825176.chain_2589,blat.proc3825176.chain_2590	3
scaffold_3	starts_in_intron	17345200	17345200	+	asmbl_40670	none	STRG.3963.2	1	STRG.3963.1,blat.proc3825166.chain_470	2
scaffold_15	retained_intron	1712462	1712546	+	asmbl_15035,asmbl_15036,asmbl_15037	none	blat.proc3825172.chain_2710,blat.proc3825172.chain_2712,blat.proc3825172.chain_2714	3	STRG.17986.1,STRG.17986.2,STRG.17986.3,blat.proc3825172.chain_2711,blat.proc3825172.chain_2715	5
scaffold_12	starts_in_intron	14048640	14048640	-	asmbl_8966	none	blat.proc3825156.chain_22	1	STRG.15235.1	1
scaffold_18	alt_acceptor	7866184	7866185	-	asmbl_19982,asmbl_19984	none	STRG.21486.1,blat.proc3825158.chain_2406	2	STRG.21486.2,blat.proc3825158.chain_2405	2
scaffold_8	alt_donor	11851488	11851489	+	asmbl_53291	none	blat.proc3825168.chain_3015	1	blat.proc3825168.chain_3024	1
scaffold_4	spliced_intron	14647836	14648056	-	asmbl_43063,asmbl_43066	none	STRG.5090.1,blat.proc3825150.chain_1236,blat.proc3825150.chain_1237	3	STRG.5090.2,STRG.5090.3,Trinity_GG_2818_c0_g1_i4,blat.proc3825150.chain_1238,blat.proc3825150.chain_1239	5
scaffold_17	retained_intron	5074760	5074970	+	asmbl_18809	none	Trinity_GG_28387_c0_g1_i1	1	STRG.20233.1	1
scaffold_17	alternate_exon	13072802	13072903	-	asmbl_18346	none	STRG.20802.1,blat.proc3825158.chain_1806	2	blat.proc3825158.chain_1807	1
scaffold_2	alt_donor	4624737	4624738	+	asmbl_24374	none	STRG.1884.1	1	blat.proc3825164.chain_2018	1
scaffold_13	retained_exon	1380204	1380337	-	asmbl_9404,asmbl_9405	none	STRG.15508.2,blat.proc3825156.chain_340,blat.proc3825156.chain_342	3	blat.proc3825156.chain_341,blat.proc3825156.chain_343	2
scaffold_8	alternate_exon	851006	851203	+	asmbl_52670	none	STRG.9743.3,blat.proc3825168.chain_2253	2	STRG.9743.1	1
scaffold_1	alternate_exon	5738303	5738504	+	asmbl_1781	none	blat.proc3825164.chain_528	1	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_530	4
scaffold_9	ends_in_intron	9870462	9870462	-	asmbl_55241	none	STRG.11356.4,Trinity_GG_6280_c2_g1_i1,blat.proc3825152.chain_3588	3	Trinity_GG_6280_c0_g1_i1,blat.proc3825152.chain_3583	2
scaffold_20	starts_in_intron	11949857	11949857	-	asmbl_26206	none	STRG.23700.2	1	blat.proc3825160.chain_679,blat.proc3825160.chain_681,blat.proc3825160.chain_682	3
scaffold_1	alternate_exon	20348519	20348972	+	asmbl_2624	none	STRG.1396.6	1	STRG.1396.1,blat.proc3825164.chain_1584	2
scaffold_7	retained_exon	12083026	12083095	+	asmbl_50221	none	STRG.9316.4	1	STRG.9316.3	1
scaffold_28	retained_exon	6546833	6547549	-	asmbl_38354,asmbl_38355	none	STRG.29753.1,STRG.29753.2	2	STRG.29753.3	1
scaffold_3	retained_intron	17849572	17849654	-	asmbl_39576	none	STRG.4005.1,blat.proc3825150.chain_190	2	STRG.4005.2	1
scaffold_12	alt_donor	10169655	10169656	+	asmbl_7905	none	STRG.14988.2	1	STRG.14988.1	1
scaffold_5	skipped_exon	12658224	12660537	+	asmbl_45812	none	STRG.6505.1	1	STRG.6505.2,blat.proc3825166.chain_2636,blat.proc3825166.chain_2637,blat.proc3825166.chain_2639	4
scaffold_1	starts_in_intron	1563905	1563905	+	asmbl_1493,asmbl_1494	none	STRG.101.3,blat.proc3825164.chain_212	2	STRG.101.1,STRG.101.2,blat.proc3825164.chain_211	3
scaffold_1	retained_intron	6496620	6496782	-	asmbl_362	none	STRG.449.1,blat.proc3825148.chain_351	2	blat.proc3825148.chain_353	1
scaffold_3	starts_in_intron	14833802	14833802	+	asmbl_40556,asmbl_40558	none	Trinity_GG_19457_c0_g1_i3,Trinity_GG_19457_c0_g1_i4,blat.proc3825166.chain_317	3	STRG.3832.1,Trinity_GG_19457_c0_g1_i1,blat.proc3825166.chain_316	3
scaffold_1	spliced_intron	19006360	19006412	+	asmbl_2575	none	STRG.1324.1	1	STRG.1324.4	1
scaffold_15	spliced_intron	5453657	5453810	-	asmbl_14208,asmbl_14209,asmbl_14213	none	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3106	5	Trinity_GG_10273_c0_g1_i6,blat.proc3825156.chain_3105,blat.proc3825156.chain_3107	3
scaffold_9	alternate_exon	14818824	14820315	-	asmbl_55498,asmbl_55502,asmbl_55504	none	STRG.11702.1,STRG.11702.3,blat.proc3825154.chain_160,blat.proc3825154.chain_161	4	STRG.11702.6	1
scaffold_9	alt_acceptor	9470289	9470290	-	asmbl_55181,asmbl_55183,asmbl_55185	none	STRG.11310.2,STRG.11310.3,blat.proc3825152.chain_3570	3	STRG.11310.1,blat.proc3825152.chain_3566,blat.proc3825152.chain_3567,blat.proc3825152.chain_3571	4
scaffold_10	skipped_exon	4158723	4159782	-	asmbl_4268	none	STRG.12253.1,blat.proc3825154.chain_809	2	STRG.12253.2,STRG.12253.3,blat.proc3825154.chain_811	3
scaffold_15	retained_intron	15434376	15435496	-	asmbl_14782,asmbl_14783	none	STRG.18932.1,STRG.18932.3,Trinity_GG_10599_c0_g1_i5,Trinity_GG_10599_c0_g1_i6,blat.proc3825156.chain_3730,blat.proc3825156.chain_3732	6	blat.proc3825156.chain_3728	1
scaffold_7	retained_intron	9312366	9312531	+	asmbl_50076	none	Trinity_GG_22395_c0_g1_i2,blat.proc3825168.chain_1670	2	STRG.9144.1,Trinity_GG_22395_c0_g1_i3,Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669,blat.proc3825168.chain_1671	5
scaffold_7	alternate_exon	18398045	18398153	+	asmbl_50520,asmbl_50521	none	STRG.9669.1,STRG.9669.2,blat.proc3825168.chain_2179,blat.proc3825168.chain_2181	4	STRG.9669.3,blat.proc3825168.chain_2182	2
scaffold_7	alternate_exon	8612646	8613291	+	asmbl_50029	none	STRG.9097.1,blat.proc3825168.chain_1613	2	STRG.9097.2,blat.proc3825168.chain_1615	2
scaffold_9	alt_acceptor	4198692	4198693	+	asmbl_53939	none	STRG.11022.2	1	STRG.11022.1,blat.proc3825168.chain_3532,blat.proc3825168.chain_3533	3
scaffold_22	alt_acceptor	10985986	10985987	-	asmbl_29636	none	STRG.25437.3	1	STRG.25437.1,blat.proc3825160.chain_2618,blat.proc3825160.chain_2619	3
scaffold_3	alternate_exon	6036642	6050043	-	asmbl_38881,asmbl_38882,asmbl_38883	none	STRG.3259.4,STRG.3259.6,STRG.3259.7	3	STRG.3259.5,Trinity_GG_1777_c0_g2_i1,blat.proc3825148.chain_3160	3
scaffold_3	alt_donor	15786823	15786824	-	asmbl_39449	none	STRG.3859.1	1	STRG.3859.2,STRG.3859.3	2
scaffold_13	alt_acceptor	1238488	1238489	+	asmbl_10548	none	STRG.15494.7	1	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_311,blat.proc3825172.chain_312	10
scaffold_1	retained_intron	9516100	9516390	-	asmbl_540,asmbl_541	none	STRG.637.2,blat.proc3825148.chain_627,blat.proc3825148.chain_628	3	STRG.637.1,STRG.637.3,blat.proc3825148.chain_630	3
scaffold_18	alt_donor	5905543	5905544	-	asmbl_19879	none	STRG.21337.3	1	STRG.21337.2,STRG.21337.4	2
scaffold_12	alt_acceptor	26477	26478	-	asmbl_8263	none	STRG.14411.3	1	STRG.14411.1,STRG.14411.2,blat.proc3825154.chain_2930,blat.proc3825154.chain_2931	4
scaffold_19	spliced_intron	8753361	8753752	+	asmbl_21547	none	STRG.22336.1,blat.proc3825174.chain_3312	2	blat.proc3825174.chain_3314	1
scaffold_8	alternate_exon	16142411	16142609	-	asmbl_52364	none	STRG.10604.4,blat.proc3825152.chain_2833	2	blat.proc3825152.chain_2829,blat.proc3825152.chain_2831	2
scaffold_6	retained_exon	3808346	3808417	+	asmbl_46861,asmbl_46863	none	STRG.7383.2,STRG.7383.4	2	STRG.7383.5,Trinity_GG_21370_c0_g1_i6,blat.proc3825166.chain_3602	3
scaffold_23	retained_intron	2305426	2306387	+	asmbl_31386	none	Trinity_GG_31502_c0_g1_i6,blat.proc3825176.chain_2664	2	STRG.25708.2,Trinity_GG_31502_c0_g1_i5,blat.proc3825176.chain_2662	3
scaffold_15	spliced_intron	2565306	2565577	-	asmbl_14021,asmbl_14022,asmbl_14024	none	STRG.18046.1,STRG.18046.3,blat.proc3825156.chain_2865,blat.proc3825156.chain_2866,blat.proc3825156.chain_2867	5	STRG.18046.2,blat.proc3825156.chain_2864	2
scaffold_4	alternate_exon	654012	654139	-	asmbl_42335	none	STRG.4137.2,Trinity_GG_2303_c0_g1_i3,blat.proc3825150.chain_369	3	STRG.4137.1,Trinity_GG_2303_c0_g1_i2,blat.proc3825150.chain_367	3
scaffold_10	retained_intron	3928652	3928827	-	asmbl_4242	none	STRG.12235.3	1	STRG.12235.2,STRG.12235.5,blat.proc3825154.chain_800	3
scaffold_12	alt_acceptor	7626418	7626419	-	asmbl_8611	none	blat.proc3825154.chain_3291	1	STRG.14843.2	1
scaffold_18	alt_donor	13654373	13654374	-	asmbl_20181	none	STRG.21800.2	1	STRG.21800.1,blat.proc3825158.chain_2602,blat.proc3825158.chain_2603	3
scaffold_28	spliced_intron	8276719	8276800	+	asmbl_37738	none	STRG.29892.1	1	Trinity_GG_33867_c0_g1_i2,blat.proc3825178.chain_3057	2
scaffold_5	ends_in_intron	5729910	5729910	+	asmbl_45359	none	blat.proc3825166.chain_2119	1	STRG.5990.1,STRG.5990.2,blat.proc3825166.chain_2117,blat.proc3825166.chain_2118	4
scaffold_8	spliced_intron	115861	115888	+	asmbl_52648	none	STRG.9713.1	1	STRG.9713.2	1
scaffold_16	spliced_intron	145688	145807	+	asmbl_16002	none	STRG.19001.1,blat.proc3825172.chain_3658	2	STRG.19001.2	1
scaffold_7	alt_acceptor	4915840	4915841	+	asmbl_49760	none	STRG.8836.4	1	STRG.8836.2,STRG.8836.3	2
scaffold_21	skipped_exon	256225	257555	-	asmbl_27289	none	STRG.23725.4	1	STRG.23725.2,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_811,blat.proc3825160.chain_812	12
scaffold_14	retained_intron	7298351	7298744	+	asmbl_12148,asmbl_12151	none	STRG.17169.3,blat.proc3825172.chain_1941,blat.proc3825172.chain_1942	3	STRG.17169.1,STRG.17169.2,blat.proc3825172.chain_1939,blat.proc3825172.chain_1940	4
scaffold_6	alternate_exon	12999206	12999351	-	asmbl_48863,asmbl_48868	none	STRG.8068.5,blat.proc3825152.chain_491	2	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,blat.proc3825152.chain_488,blat.proc3825152.chain_492,blat.proc3825152.chain_495	7
scaffold_8	alt_acceptor	18575241	18575242	-	asmbl_52556,asmbl_52557	none	STRG.10754.1,STRG.10754.2,Trinity_GG_5945_c0_g1_i1,Trinity_GG_5945_c0_g1_i4,blat.proc3825152.chain_2963,blat.proc3825152.chain_2964,blat.proc3825152.chain_2965	7	STRG.10754.3	1
scaffold_8	alt_donor	12693248	12693249	+	asmbl_53327,asmbl_53328,asmbl_53329	none	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3009	3	blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3011	4
scaffold_12	spliced_intron	7275468	7275640	-	asmbl_8563,asmbl_8564,asmbl_8566	none	STRG.14801.1,STRG.14801.2,Trinity_GG_8260_c0_g1_i1,Trinity_GG_8260_c0_g1_i2,Trinity_GG_8260_c0_g1_i3,blat.proc3825154.chain_3307,blat.proc3825154.chain_3308,blat.proc3825154.chain_3309	8	Trinity_GG_8260_c0_g1_i5,blat.proc3825154.chain_3306	2
scaffold_2	retained_intron	9262531	9262914	-	asmbl_23371,asmbl_23373	none	STRG.2169.1,STRG.2169.3,blat.proc3825148.chain_2191	3	STRG.2169.2,blat.proc3825148.chain_2192	2
scaffold_19	retained_intron	9488173	9488268	-	asmbl_22335	none	blat.proc3825158.chain_3167	1	STRG.22382.1,blat.proc3825158.chain_3168	2
scaffold_10	starts_in_intron	3876604	3876604	+	asmbl_3085	none	Trinity_GG_24101_c0_g1_i1,blat.proc3825170.chain_947	2	STRG.12227.1,Trinity_GG_24101_c0_g1_i2,blat.proc3825170.chain_946	3
scaffold_12	alternate_exon	9757853	9757898	+	asmbl_7874	none	STRG.14948.2	1	STRG.14948.1,blat.proc3825170.chain_3484	2
scaffold_12	spliced_intron	12802383	12802469	+	asmbl_8022,asmbl_8023,asmbl_8024	none	STRG.15177.1,blat.proc3825170.chain_3619,blat.proc3825170.chain_3620,blat.proc3825170.chain_3621	4	STRG.15177.2,Trinity_GG_25638_c0_g2_i1,blat.proc3825170.chain_3623	3
scaffold_25	retained_intron	9431822	9432003	+	asmbl_33814	none	Trinity_GG_32597_c1_g1_i2,blat.proc3825178.chain_799	2	STRG.27757.3	1
scaffold_6	starts_in_intron	18011119	18011119	-	asmbl_49219	none	blat.proc3825152.chain_939	1	STRG.8488.1,blat.proc3825152.chain_937	2
scaffold_5	alt_donor	10170936	10170937	+	asmbl_45663	none	STRG.6320.1,blat.proc3825166.chain_2512	2	blat.proc3825166.chain_2511	1
scaffold_18	retained_intron	4708153	4708225	+	asmbl_20547	none	Trinity_GG_29016_c0_g1_i1,blat.proc3825174.chain_2203	2	STRG.21262.1,blat.proc3825174.chain_2204	2
scaffold_18	spliced_intron	7481614	7482977	-	asmbl_19937	none	Trinity_GG_11995_c0_g1_i2	1	STRG.21443.1,Trinity_GG_11995_c0_g1_i1,blat.proc3825158.chain_2347	3
scaffold_23	alt_acceptor	4449754	4449755	-	asmbl_30865,asmbl_30866,asmbl_30870	none	STRG.25862.1,STRG.25862.4,STRG.25862.5,Trinity_GG_14447_c0_g1_i2,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3004,blat.proc3825160.chain_3005	7	STRG.25862.3,Trinity_GG_14447_c0_g1_i1,blat.proc3825160.chain_3002	3
scaffold_9	spliced_intron	6903131	6903325	-	asmbl_55087,asmbl_55088,asmbl_55092	none	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3391,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	5	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3389,blat.proc3825152.chain_3390,blat.proc3825152.chain_3394	4
scaffold_9	alt_donor	3374716	3374717	+	asmbl_53893	none	blat.proc3825168.chain_3418	1	blat.proc3825168.chain_3419	1
scaffold_16	alternate_exon	947738	947795	-	asmbl_16920	none	Trinity_GG_10710_c0_g1_i1,blat.proc3825158.chain_232	2	STRG.19070.1,Trinity_GG_10710_c0_g1_i2,blat.proc3825158.chain_233	3
scaffold_19	alt_acceptor	12398790	12398791	-	asmbl_22478,asmbl_22480,asmbl_22482	none	STRG.22570.2,STRG.22570.3,blat.proc3825158.chain_3327,blat.proc3825158.chain_3328,blat.proc3825158.chain_3329	5	STRG.22570.1,blat.proc3825158.chain_3326,blat.proc3825158.chain_3330	3
scaffold_17	alt_acceptor	14633464	14633465	+	asmbl_19420	none	blat.proc3825174.chain_1755	1	STRG.20943.1,STRG.20943.3	2
scaffold_5	retained_intron	8751102	8751176	+	asmbl_45571	none	blat.proc3825166.chain_2415	1	STRG.6213.1,blat.proc3825166.chain_2414	2
scaffold_18	alt_acceptor	9790608	9790609	+	asmbl_20894	none	STRG.21586.2	1	STRG.21586.1,STRG.21586.3,blat.proc3825174.chain_2555,blat.proc3825174.chain_2556	4
scaffold_10	alternate_exon	8328789	8329037	-	asmbl_4584	none	blat.proc3825154.chain_1182	1	blat.proc3825154.chain_1192	1
scaffold_5	starts_in_intron	4704974	4704974	-	asmbl_43998	none	blat.proc3825150.chain_2128	1	STRG.5926.1,blat.proc3825150.chain_2130	2
scaffold_13	skipped_exon	6290886	6293319	+	asmbl_10918,asmbl_10921	none	STRG.15925.2,blat.proc3825172.chain_658,blat.proc3825172.chain_659	3	STRG.15925.1,blat.proc3825172.chain_660,blat.proc3825172.chain_661	3
scaffold_15	skipped_exon	15409801	15410185	+	asmbl_15768	none	STRG.18930.3,blat.proc3825172.chain_3586	2	STRG.18930.1,STRG.18930.2,STRG.18930.9,blat.proc3825172.chain_3588,blat.proc3825172.chain_3590	5
scaffold_7	alt_acceptor	13866125	13866126	-	asmbl_51318	none	STRG.9480.1,blat.proc3825152.chain_1822	2	STRG.9480.4,STRG.9480.5	2
scaffold_11	retained_intron	8073049	8073152	-	asmbl_6833	none	Trinity_GG_7709_c1_g1_i4,blat.proc3825154.chain_2337	2	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335,blat.proc3825154.chain_2336	4
scaffold_13	alternate_exon	8355420	8355997	+	asmbl_11130	none	blat.proc3825172.chain_919	1	STRG.16130.4	1
scaffold_20	alternate_exon	6983461	6983569	-	asmbl_25860	none	STRG.23261.3	1	STRG.23261.1	1
scaffold_20	retained_exon	12074890	12076778	-	asmbl_26214,asmbl_26216,asmbl_26217,asmbl_26218	none	STRG.23706.1,blat.proc3825160.chain_685,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_688	5	STRG.23706.2	1
scaffold_17	starts_in_intron	654851	654851	-	asmbl_17639	none	blat.proc3825158.chain_967	1	STRG.19915.1,Trinity_GG_11177_c0_g1_i2,blat.proc3825158.chain_964,blat.proc3825158.chain_965	4
scaffold_21	alt_acceptor	3824343	3824344	-	asmbl_27546,asmbl_27551,asmbl_27552	none	STRG.23974.2,STRG.23974.3,blat.proc3825160.chain_1116,blat.proc3825160.chain_1119	4	STRG.23974.1,blat.proc3825160.chain_1115,blat.proc3825160.chain_1117	3
scaffold_11	skipped_exon	13097080	13097573	+	asmbl_6032,asmbl_6035	none	blat.proc3825170.chain_2746,blat.proc3825170.chain_2748	2	STRG.14188.2,blat.proc3825170.chain_2747,blat.proc3825170.chain_2749	3
scaffold_28	alternate_exon	3848837	3849925	-	asmbl_38181	none	STRG.29584.2	1	STRG.29584.1	1
scaffold_13	starts_in_intron	16437910	16437910	+	asmbl_11580	none	Trinity_GG_26477_c0_g1_i3,blat.proc3825172.chain_1428	2	STRG.16696.1,STRG.16696.2,Trinity_GG_26477_c0_g1_i1,Trinity_GG_26477_c0_g1_i5,blat.proc3825172.chain_1424,blat.proc3825172.chain_1426,blat.proc3825172.chain_1427	7
scaffold_14	spliced_intron	15464262	15464367	+	asmbl_12595	none	STRG.17779.1,Trinity_GG_27075_c1_g1_i1,blat.proc3825172.chain_2484	3	Trinity_GG_27075_c1_g1_i2,blat.proc3825172.chain_2485	2
scaffold_4	ends_in_intron	19549406	19549406	-	asmbl_43452	none	Trinity_GG_3106_c0_g1_i2	1	STRG.5539.1,blat.proc3825150.chain_1717	2
scaffold_20	alternate_exon	11672272	11672642	-	asmbl_26175	none	blat.proc3825160.chain_747	1	STRG.23670.2,blat.proc3825160.chain_751	2
scaffold_5	starts_in_intron	6578953	6578953	-	asmbl_44100	none	blat.proc3825150.chain_2176	1	STRG.6057.2,blat.proc3825150.chain_2180	2
scaffold_20	starts_in_intron	2052513	2052513	+	asmbl_26460	none	Trinity_GG_29935_c0_g1_i2	1	STRG.22939.2	1
scaffold_4	spliced_intron	4113314	4113401	-	asmbl_42480,asmbl_42481,asmbl_42485,asmbl_42486,asmbl_42487,asmbl_42488	none	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_477,blat.proc3825150.chain_479,blat.proc3825150.chain_480,blat.proc3825150.chain_481,blat.proc3825150.chain_482	8	blat.proc3825150.chain_478	1
scaffold_23	retained_intron	2164596	2164823	-	asmbl_30702	none	blat.proc3825160.chain_2856	1	STRG.25690.1,STRG.25690.2	2
scaffold_1	skipped_exon	12463351	12464743	-	asmbl_719,asmbl_722	none	STRG.867.3,STRG.867.5	2	STRG.867.1,STRG.867.2	2
scaffold_8	alternate_exon	6809265	6809345	-	asmbl_51890	none	blat.proc3825152.chain_2306	1	STRG.10044.2,blat.proc3825152.chain_2307	2
scaffold_21	spliced_intron	8278548	8278631	+	asmbl_28805	none	STRG.24368.2	1	STRG.24368.4	1
scaffold_16	spliced_intron	433622	434014	-	asmbl_16871,asmbl_16876,asmbl_16880	none	STRG.19041.1,blat.proc3825158.chain_196,blat.proc3825158.chain_203	3	blat.proc3825158.chain_198,blat.proc3825158.chain_199	2
scaffold_6	ends_in_intron	2520584	2520584	-	asmbl_48135	none	Trinity_GG_4042_c0_g2_i1,blat.proc3825150.chain_3348	2	STRG.7254.2	1
scaffold_4	spliced_intron	12571017	12571399	-	asmbl_42931	none	STRG.4898.2,blat.proc3825150.chain_1086	2	blat.proc3825150.chain_1085	1
scaffold_2	starts_in_intron	14545453	14545453	+	asmbl_24950	none	Trinity_GG_18675_c3_g1_i1,blat.proc3825164.chain_2668	2	STRG.2464.1,STRG.2464.2,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	10
scaffold_20	starts_in_intron	7099784	7099784	-	asmbl_25873	none	blat.proc3825160.chain_345	1	STRG.23273.1	1
scaffold_16	ends_in_intron	6232200	6232200	-	asmbl_17156	none	blat.proc3825158.chain_513	1	STRG.19360.2	1
scaffold_22	alt_acceptor	11544173	11544174	+	asmbl_30405	none	STRG.25505.1	1	STRG.25505.3	1
scaffold_15	retained_intron	9730272	9730382	-	asmbl_14407	none	blat.proc3825156.chain_3290	1	STRG.18492.1,STRG.18492.2,STRG.18492.3,STRG.18492.4,Trinity_GG_10360_c0_g1_i2,blat.proc3825156.chain_3289,blat.proc3825156.chain_3291	7
scaffold_2	alt_acceptor	13052789	13052790	+	asmbl_24807	none	STRG.2330.1,blat.proc3825164.chain_2479	2	STRG.2330.3,blat.proc3825164.chain_2480	2
scaffold_27	alternate_exon	5782860	5782992	-	asmbl_37017	none	STRG.28980.1	1	STRG.28980.2	1
scaffold_8	spliced_intron	4299829	4300052	+	asmbl_52829	none	STRG.9911.1,blat.proc3825168.chain_2501	2	blat.proc3825168.chain_2502	1
scaffold_15	starts_in_intron	4515422	4515422	+	asmbl_15155	none	STRG.18182.1	1	blat.proc3825172.chain_2784	1
scaffold_26	retained_intron	5043449	5043773	+	asmbl_34946	none	blat.proc3825176.chain_2466,blat.proc3825178.chain_1172	2	STRG.28240.1,blat.proc3825176.chain_2465,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1169,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180	12
scaffold_10	alt_acceptor	8907702	8907703	+	asmbl_3338	none	STRG.12636.2	1	STRG.12636.1,blat.proc3825170.chain_1225,blat.proc3825170.chain_1226	3
scaffold_9	starts_in_intron	2801806	2801806	+	asmbl_53868	none	STRG.10918.7	1	STRG.10918.1,STRG.10918.2,STRG.10918.4,STRG.10918.5,STRG.10918.6,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3428,blat.proc3825168.chain_3430,blat.proc3825168.chain_3431	9
scaffold_10	starts_in_intron	8330101	8330101	-	asmbl_4582	none	blat.proc3825154.chain_1188	1	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1182,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190,blat.proc3825154.chain_1192	6
scaffold_2	alt_donor	17972993	17972994	+	asmbl_25212	none	STRG.2689.2	1	STRG.2689.1,blat.proc3825164.chain_2961,blat.proc3825164.chain_2962,blat.proc3825164.chain_2963,blat.proc3825164.chain_2964	5
scaffold_15	alternate_exon	12436773	12438839	+	asmbl_15573	none	STRG.18701.1	1	blat.proc3825172.chain_3339	1
scaffold_23	alternate_exon	8811466	8811646	+	asmbl_31782	none	STRG.26148.1,blat.proc3825176.chain_3122	2	STRG.26148.3	1
scaffold_9	spliced_intron	14817657	14818073	-	asmbl_55498	none	STRG.11702.1,blat.proc3825154.chain_160	2	STRG.11702.3,Trinity_GG_6457_c0_g1_i1,blat.proc3825154.chain_161,blat.proc3825154.chain_164	4
scaffold_20	alternate_exon	11483460	11484147	+	asmbl_27057	none	STRG.23653.4	1	STRG.23653.2,STRG.23653.3,Trinity_GG_30405_c0_g1_i2,Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_846,blat.proc3825176.chain_847	6
scaffold_5	spliced_intron	15305751	15305837	+	asmbl_45985,asmbl_45986	none	STRG.6721.1,Trinity_GG_20976_c0_g1_i1,Trinity_GG_20976_c0_g1_i2,blat.proc3825166.chain_2889,blat.proc3825166.chain_2890	5	STRG.6721.2	1
scaffold_17	spliced_intron	5710589	5710711	-	asmbl_17950	none	STRG.20274.1	1	STRG.20274.2,STRG.20274.3,blat.proc3825158.chain_1286,blat.proc3825158.chain_1287,blat.proc3825158.chain_1288	5
scaffold_6	alternate_exon	13918869	13919194	-	asmbl_48954,asmbl_48955,asmbl_48958,asmbl_48960	none	STRG.8139.1,STRG.8139.2,STRG.8139.4,blat.proc3825152.chain_568,blat.proc3825152.chain_569,blat.proc3825152.chain_570	6	STRG.8139.3,Trinity_GG_4635_c1_g1_i2,blat.proc3825152.chain_571	3
scaffold_5	starts_in_intron	11652187	11652187	-	asmbl_44421	none	blat.proc3825150.chain_2634	1	STRG.6438.1,blat.proc3825150.chain_2635	2
scaffold_25	starts_in_intron	3086736	3086736	-	asmbl_34086,asmbl_34091	none	STRG.27251.1,STRG.27251.4	2	STRG.27251.2,STRG.27251.3,STRG.27251.5,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555,blat.proc3825162.chain_559	7
scaffold_4	retained_intron	19539841	19539875	-	asmbl_43448	none	STRG.5541.2,Trinity_GG_3107_c0_g1_i2,blat.proc3825150.chain_1719	3	blat.proc3825150.chain_1720	1
scaffold_14	spliced_intron	13223477	13223628	+	asmbl_12462,asmbl_12464,asmbl_12467,asmbl_12468,asmbl_12469	none	STRG.17622.1,STRG.17622.2,STRG.17622.3,STRG.17622.4,blat.proc3825172.chain_2329,blat.proc3825172.chain_2330,blat.proc3825172.chain_2335	7	blat.proc3825172.chain_2332	1
scaffold_14	alt_donor	15468155	15468156	+	asmbl_12597	none	STRG.17780.2	1	STRG.17780.4	1
scaffold_25	retained_intron	5827765	5828229	-	asmbl_34295	none	blat.proc3825162.chain_874	1	blat.proc3825162.chain_876	1
scaffold_5	skipped_exon	10381045	10381466	-	asmbl_44354	none	blat.proc3825150.chain_2517	1	STRG.6339.1,STRG.6339.2,blat.proc3825150.chain_2516,blat.proc3825150.chain_2518	4
scaffold_10	spliced_intron	8917449	8918183	+	asmbl_3342	none	STRG.12642.2,blat.proc3825170.chain_1194	2	STRG.12642.1,blat.proc3825170.chain_1197	2
scaffold_24	starts_in_intron	9064331	9064331	+	asmbl_32486	none	Trinity_GG_32210_c0_g1_i2,blat.proc3825178.chain_138	2	STRG.26933.1,STRG.26933.2,STRG.26933.3,blat.proc3825178.chain_139	4
scaffold_14	alt_donor	1111237	1111238	+	asmbl_11806	none	STRG.16770.2,blat.proc3825172.chain_1531	2	STRG.16770.3	1
scaffold_6	alternate_exon	15793520	15796187	+	asmbl_47672	none	STRG.8319.1,Trinity_GG_21860_c0_g1_i7,blat.proc3825168.chain_745	3	STRG.8319.2	1
scaffold_28	ends_in_intron	148035	148035	-	asmbl_37897	none	blat.proc3825162.chain_2410	1	STRG.29244.1,blat.proc3825162.chain_2411	2
scaffold_1	skipped_exon	3285767	3287424	+	asmbl_1591	none	STRG.209.1,blat.proc3825164.chain_327	2	STRG.209.2,blat.proc3825164.chain_326	2
scaffold_7	alt_donor	18785087	18785088	+	asmbl_50532,asmbl_50534,asmbl_50535	none	STRG.9696.1,STRG.9696.3,STRG.9696.4	3	STRG.9696.2	1
scaffold_2	retained_exon	9817364	9817425	-	asmbl_23391	none	STRG.2196.2,blat.proc3825148.chain_2227	2	STRG.2196.1,blat.proc3825148.chain_2228	2
scaffold_3	starts_in_intron	14318763	14318763	-	asmbl_39359	none	blat.proc3825148.chain_3615	1	STRG.3772.1,STRG.3772.2,blat.proc3825148.chain_3613,blat.proc3825148.chain_3614	4
scaffold_5	spliced_intron	9853379	9853480	-	asmbl_44306	none	STRG.6308.1	1	STRG.6308.2,Trinity_GG_3547_c0_g1_i1,blat.proc3825150.chain_2492	3
scaffold_9	spliced_intron	9643517	9643587	+	asmbl_54211	none	STRG.11338.1,blat.proc3825170.chain_118	2	blat.proc3825170.chain_119	1
scaffold_28	retained_intron	7528910	7529100	+	asmbl_37691	none	blat.proc3825178.chain_2986	1	STRG.29834.1,blat.proc3825178.chain_2987,blat.proc3825178.chain_2990	3
scaffold_6	skipped_exon	14195603	14197732	+	asmbl_47592	none	STRG.8185.2,blat.proc3825168.chain_613	2	STRG.8185.1,blat.proc3825168.chain_610,blat.proc3825168.chain_612	3
scaffold_3	spliced_intron	19029164	19029934	-	asmbl_39636,asmbl_39639	none	blat.proc3825150.chain_275,blat.proc3825150.chain_276	2	blat.proc3825150.chain_277	1
scaffold_2	alt_acceptor	6752520	6752521	-	asmbl_23227	none	STRG.2026.1,Trinity_GG_1117_c0_g1_i1,blat.proc3825148.chain_2006,blat.proc3825148.chain_2008	4	STRG.2026.2,blat.proc3825148.chain_2009	2
scaffold_4	alt_acceptor	5278644	5278645	-	asmbl_42588,asmbl_42590,asmbl_42591	none	STRG.4425.2,STRG.4425.3,blat.proc3825150.chain_680,blat.proc3825150.chain_681	4	STRG.4425.1	1
scaffold_8	skipped_exon	15335576	15336244	+	asmbl_53399	none	STRG.10559.1,blat.proc3825168.chain_3090	2	STRG.10559.2,blat.proc3825168.chain_3089	2
scaffold_20	spliced_intron	10114940	10115029	-	asmbl_26083,asmbl_26084	none	STRG.23563.2,STRG.23563.3	2	STRG.23563.1,blat.proc3825160.chain_647,blat.proc3825160.chain_648	3
scaffold_28	retained_intron	5755662	5756003	+	asmbl_37604	none	Trinity_GG_33774_c0_g2_i1,blat.proc3825178.chain_2883	2	STRG.29716.2,Trinity_GG_33774_c0_g1_i2,blat.proc3825178.chain_2882	3
scaffold_28	spliced_intron	5611496	5611679	-	asmbl_38301,asmbl_38302	none	STRG.29697.1,STRG.29697.6,Trinity_GG_16664_c0_g1_i9,blat.proc3825162.chain_2897,blat.proc3825162.chain_2899	5	STRG.29697.2,STRG.29697.3,STRG.29697.4,STRG.29697.5,Trinity_GG_16664_c0_g1_i1,Trinity_GG_16664_c0_g1_i6,Trinity_GG_16664_c0_g1_i8,blat.proc3825162.chain_2898,blat.proc3825162.chain_2900,blat.proc3825162.chain_2901,blat.proc3825162.chain_2902	11
scaffold_8	retained_intron	764211	764246	+	asmbl_52667	none	STRG.9733.1,Trinity_GG_22716_c1_g1_i1,blat.proc3825168.chain_2262	3	STRG.9733.2	1
scaffold_16	alt_acceptor	768070	768071	-	asmbl_16906	none	STRG.19054.1	1	STRG.19054.2	1
scaffold_28	alt_acceptor	3329565	3329566	+	asmbl_37477	none	blat.proc3825178.chain_2631	1	STRG.29555.1	1
scaffold_14	alt_donor	1592536	1592537	-	asmbl_12895,asmbl_12901	none	STRG.16799.1,Trinity_GG_16450_c0_g1_i2,blat.proc3825156.chain_1564	3	STRG.16799.2,STRG.16799.3,STRG.16799.4,Trinity_GG_16450_c0_g1_i1,blat.proc3825156.chain_1566	5
scaffold_2	spliced_intron	5716839	5716996	+	asmbl_24434,asmbl_24436	none	STRG.1961.1,STRG.1961.2,blat.proc3825164.chain_2084	3	STRG.1961.3,Trinity_GG_18408_c0_g2_i1,blat.proc3825164.chain_2085	3
scaffold_7	retained_intron	4046121	4046335	-	asmbl_50847	none	STRG.8803.2,Trinity_GG_5023_c0_g1_i1,blat.proc3825152.chain_1273	3	STRG.8803.3,blat.proc3825152.chain_1276	2
scaffold_5	starts_in_intron	18179594	18179594	+	asmbl_46210,asmbl_46211	none	Trinity_GG_21146_c1_g1_i2,Trinity_GG_21146_c1_g1_i3,blat.proc3825166.chain_3179,blat.proc3825166.chain_3181	4	STRG.6956.1,STRG.6956.2,STRG.6956.3,Trinity_GG_21146_c1_g1_i4,blat.proc3825166.chain_3180	5
scaffold_11	alt_donor	2101440	2101441	-	asmbl_6473,asmbl_6474	none	STRG.13379.1,STRG.13379.3,blat.proc3825154.chain_1948,blat.proc3825154.chain_1950	4	STRG.13379.2,blat.proc3825154.chain_1949	2
scaffold_6	retained_intron	9585597	9585676	+	asmbl_47232	none	Trinity_GG_21611_c0_g1_i1,blat.proc3825168.chain_285	2	STRG.7810.1,blat.proc3825168.chain_286	2
scaffold_17	alt_acceptor	4745013	4745014	+	asmbl_18793	none	STRG.20209.1,Trinity_GG_28353_c0_g1_i1,blat.proc3825174.chain_1026	3	STRG.20209.2	1
scaffold_1	ends_in_intron	12502047	12502047	-	asmbl_727	none	Trinity_GG_407_c0_g1_i3,blat.proc3825148.chain_761	2	STRG.865.1,blat.proc3825148.chain_763	2
scaffold_6	ends_in_intron	8849445	8849445	-	asmbl_48593	none	blat.proc3825152.chain_137	1	STRG.7762.1,STRG.7762.2,blat.proc3825152.chain_136,blat.proc3825152.chain_138	4
scaffold_21	alt_acceptor	5545637	5545638	+	asmbl_28576	none	STRG.24088.1,blat.proc3825176.chain_1304	2	blat.proc3825176.chain_1305	1
scaffold_9	alternate_exon	13891465	13891500	-	asmbl_55451	none	STRG.11653.2,blat.proc3825154.chain_113	2	STRG.11653.1,STRG.11653.3	2
scaffold_3	spliced_intron	5951042	5951658	-	asmbl_38878,asmbl_38883	none	STRG.3259.4,STRG.3259.5,blat.proc3825148.chain_3162	3	STRG.3259.2,blat.proc3825148.chain_3163	2
scaffold_6	spliced_intron	4538209	4538372	-	asmbl_48336	none	STRG.7434.1,Trinity_GG_4189_c1_g2_i1	2	STRG.7434.4,STRG.7434.5,Trinity_GG_4189_c1_g2_i2	3
scaffold_9	alt_donor	12454087	12454088	+	asmbl_54435	none	STRG.11562.2,blat.proc3825170.chain_391	2	STRG.11562.1,blat.proc3825170.chain_392	2
scaffold_4	retained_intron	6286227	6286678	-	asmbl_42670	none	Trinity_GG_2543_c0_g1_i1,blat.proc3825150.chain_779	2	STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i7,blat.proc3825150.chain_774,blat.proc3825150.chain_780	6
scaffold_10	starts_in_intron	7283927	7283927	-	asmbl_4541	none	STRG.12546.3,blat.proc3825154.chain_1128	2	STRG.12546.1,blat.proc3825154.chain_1129,blat.proc3825154.chain_1130	3
scaffold_6	alternate_exon	3051355	3051874	+	asmbl_46798,asmbl_46802,asmbl_46803	none	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4	blat.proc3825166.chain_3527	1
scaffold_17	ends_in_intron	9007683	9007683	+	asmbl_19057	none	blat.proc3825174.chain_1323	1	STRG.20525.2,STRG.20525.3,blat.proc3825174.chain_1321	3
scaffold_27	retained_exon	627096	627258	-	asmbl_36702	none	STRG.28583.1,blat.proc3825162.chain_1827	2	STRG.28583.3,blat.proc3825162.chain_1825	2
scaffold_8	retained_intron	11952271	11952696	+	asmbl_53296,asmbl_53297	none	Trinity_GG_23095_c0_g1_i5,blat.proc3825168.chain_2958	2	STRG.10399.1	1
scaffold_17	ends_in_intron	9567722	9567722	+	asmbl_19113	none	STRG.20575.2,Trinity_GG_28570_c0_g1_i4,blat.proc3825174.chain_1412	3	STRG.20575.1,Trinity_GG_28570_c0_g1_i1,Trinity_GG_28570_c0_g1_i2,Trinity_GG_28570_c0_g1_i3,blat.proc3825174.chain_1411,blat.proc3825174.chain_1413,blat.proc3825174.chain_1414	7
scaffold_1	ends_in_intron	16101169	16101169	+	asmbl_2464	none	blat.proc3825164.chain_1281	1	STRG.1132.1,Trinity_GG_17976_c0_g1_i3,blat.proc3825164.chain_1280	3
scaffold_2	alt_acceptor	7881105	7881106	+	asmbl_24581,asmbl_24586	none	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291	5	Trinity_GG_18501_c0_g1_i16,blat.proc3825164.chain_2292	2
scaffold_2	ends_in_intron	1493340	1493340	+	asmbl_24210	none	STRG.1622.3	1	STRG.1622.1,STRG.1622.2	2
scaffold_19	alt_acceptor	6791164	6791165	+	asmbl_21445	none	STRG.22197.1,blat.proc3825174.chain_3177	2	STRG.22197.2,blat.proc3825174.chain_3178	2
scaffold_20	skipped_exon	6468162	6468442	-	asmbl_25839	none	STRG.23233.2	1	STRG.23233.1,blat.proc3825160.chain_331	2
scaffold_12	skipped_exon	9797605	9799301	+	asmbl_7879	none	STRG.14950.2	1	STRG.14950.1,blat.proc3825170.chain_3438	2
scaffold_14	alt_acceptor	3157075	3157076	+	asmbl_11911,asmbl_11913,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11921,asmbl_11922,asmbl_11923,asmbl_11924	none	STRG.16908.1,Trinity_GG_26576_c0_g1_i11,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1605,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1609,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	17	STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i12,blat.proc3825172.chain_1601	4
scaffold_5	skipped_exon	134623	136009	+	asmbl_45072	none	STRG.5577.1	1	STRG.5577.2	1
scaffold_20	starts_in_intron	1582268	1582268	+	asmbl_26434	none	blat.proc3825176.chain_21	1	STRG.22883.1	1
scaffold_2	retained_intron	943318	943692	+	asmbl_24164	none	Trinity_GG_18238_c3_g1_i2,blat.proc3825164.chain_1781	2	Trinity_GG_18238_c3_g1_i1,blat.proc3825164.chain_1780	2
scaffold_9	starts_in_intron	12470672	12470672	+	asmbl_54440	none	blat.proc3825170.chain_386	1	blat.proc3825170.chain_384,blat.proc3825170.chain_385	2
scaffold_28	retained_exon	3732310	3732446	-	asmbl_38161,asmbl_38162,asmbl_38163,asmbl_38164,asmbl_38165,asmbl_38169,asmbl_38170	none	STRG.29587.1,STRG.29587.2,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2737,blat.proc3825162.chain_2738	8	blat.proc3825162.chain_2739	1
scaffold_2	alternate_exon	18917442	18917622	-	asmbl_23834,asmbl_23835,asmbl_23836	none	STRG.2767.1,STRG.2767.2,Trinity_GG_1525_c0_g1_i2,Trinity_GG_1525_c0_g1_i3,Trinity_GG_1525_c0_g1_i4,blat.proc3825148.chain_2712,blat.proc3825148.chain_2713,blat.proc3825148.chain_2715	8	Trinity_GG_1525_c0_g1_i1,blat.proc3825148.chain_2714	2
scaffold_9	alt_donor	15387511	15387512	+	asmbl_54558,asmbl_54559,asmbl_54562,asmbl_54564	none	STRG.11739.1,STRG.11739.2,blat.proc3825170.chain_498,blat.proc3825170.chain_500,blat.proc3825170.chain_502,blat.proc3825170.chain_503	6	STRG.11739.3,STRG.11739.4,blat.proc3825170.chain_499,blat.proc3825170.chain_501	4
scaffold_8	retained_exon	11297315	11297361	+	asmbl_53216,asmbl_53217	none	STRG.10343.2,Trinity_GG_23079_c0_g1_i2,blat.proc3825168.chain_2924	3	STRG.10343.1,STRG.10343.3,Trinity_GG_23079_c0_g1_i3,blat.proc3825168.chain_2926	4
scaffold_13	spliced_intron	7192850	7192955	-	asmbl_9865	none	STRG.16016.5	1	STRG.16016.4,Trinity_GG_9030_c0_g1_i1,blat.proc3825156.chain_959	3
scaffold_6	retained_exon	16888019	16888129	-	asmbl_49174	none	STRG.8411.2,Trinity_GG_4777_c0_g1_i2,blat.proc3825152.chain_819	3	STRG.8411.1,STRG.8411.3,Trinity_GG_4777_c0_g1_i3,Trinity_GG_4777_c0_g1_i4,blat.proc3825152.chain_820,blat.proc3825152.chain_822	6
scaffold_6	alt_acceptor	15944964	15944965	+	asmbl_47680	none	STRG.8324.3	1	blat.proc3825152.chain_740	1
scaffold_3	alt_donor	13419404	13419405	-	asmbl_39265	none	STRG.3693.3	1	STRG.3693.4	1
scaffold_1	starts_in_intron	2782963	2782963	-	asmbl_132	none	blat.proc3825148.chain_167	1	STRG.178.1,STRG.178.2,blat.proc3825148.chain_168,blat.proc3825148.chain_169	4
scaffold_6	starts_in_intron	3285617	3285617	-	asmbl_48238	none	blat.proc3825150.chain_3415	1	STRG.7334.1,STRG.7334.2,STRG.7334.3,blat.proc3825150.chain_3416	4
scaffold_9	starts_in_intron	9533485	9533485	-	asmbl_55190	none	STRG.11314.2	1	STRG.11314.1,blat.proc3825152.chain_3548,blat.proc3825152.chain_3549,blat.proc3825152.chain_3550	4
scaffold_20	retained_intron	11078627	11078744	-	asmbl_26133,asmbl_26135	none	blat.proc3825160.chain_591,blat.proc3825160.chain_593	2	STRG.23624.2,blat.proc3825160.chain_595	2
scaffold_5	alternate_exon	15703769	15704198	+	asmbl_46011	none	STRG.6765.3	1	STRG.6765.1,blat.proc3825166.chain_2903,blat.proc3825166.chain_2904	3
scaffold_27	ends_in_intron	3999602	3999602	+	asmbl_36247	none	blat.proc3825178.chain_2035	1	STRG.28871.1,STRG.28871.2,STRG.28871.3,Trinity_GG_33286_c0_g1_i7,blat.proc3825178.chain_2033,blat.proc3825178.chain_2036,blat.proc3825178.chain_2038	7
scaffold_11	alt_donor	4330931	4330932	-	asmbl_6598,asmbl_6599,asmbl_6600	none	STRG.13525.2,blat.proc3825154.chain_2135,blat.proc3825154.chain_2136	3	STRG.13525.1,blat.proc3825154.chain_2132,blat.proc3825154.chain_2133,blat.proc3825154.chain_2137	4
scaffold_1	alt_donor	11763018	11763019	+	asmbl_2147	none	STRG.802.2	1	STRG.802.1,STRG.802.3,blat.proc3825164.chain_982,blat.proc3825164.chain_983	4
scaffold_4	alt_acceptor	19587578	19587579	-	asmbl_43454	none	STRG.5543.1,blat.proc3825150.chain_1743	2	STRG.5543.2,blat.proc3825150.chain_1740	2
scaffold_17	alt_acceptor	10014850	10014851	+	asmbl_19152	none	STRG.20616.2,Trinity_GG_28603_c0_g1_i3	2	STRG.20616.1,Trinity_GG_28603_c0_g1_i1	2
scaffold_15	spliced_intron	11402043	11402524	-	asmbl_14495	none	STRG.18606.3,blat.proc3825156.chain_3366	2	STRG.18606.2,blat.proc3825156.chain_3365	2
scaffold_7	retained_exon	4047198	4047231	-	asmbl_50848	none	STRG.8803.3,blat.proc3825152.chain_1276	2	STRG.8803.1	1
scaffold_27	skipped_exon	1983237	1983877	-	asmbl_36801	none	STRG.28683.2,blat.proc3825162.chain_1935	2	STRG.28683.1,blat.proc3825162.chain_1934	2
scaffold_9	spliced_intron	13297182	13297316	-	asmbl_55422	none	STRG.11628.2	1	STRG.11628.4	1
scaffold_5	alternate_exon	18698535	18699310	-	asmbl_44853	none	STRG.6997.3,Trinity_GG_3896_c1_g1_i2,blat.proc3825150.chain_3104	3	blat.proc3825150.chain_3102	1
scaffold_19	alt_acceptor	13372921	13372922	+	asmbl_21876	none	STRG.22657.3	1	STRG.22657.1,STRG.22657.2,Trinity_GG_29796_c0_g1_i2,blat.proc3825174.chain_3600	4
scaffold_12	alt_donor	4951644	4951645	-	asmbl_8468	none	STRG.14666.2,blat.proc3825154.chain_3102	2	STRG.14666.1,blat.proc3825154.chain_3103,blat.proc3825154.chain_3104	3
scaffold_18	starts_in_intron	8911880	8911880	-	asmbl_20048,asmbl_20049	none	STRG.21558.2,STRG.21558.5	2	STRG.21558.1,STRG.21558.3,STRG.21558.4,STRG.21558.6,STRG.21558.7,STRG.21558.8,STRG.21558.9,Trinity_GG_12043_c0_g1_i4,blat.proc3825158.chain_2447,blat.proc3825158.chain_2448,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451,blat.proc3825158.chain_2453	13
scaffold_1	skipped_exon	6752679	6753323	+	asmbl_1852	none	STRG.465.3,blat.proc3825164.chain_604	2	STRG.465.1,STRG.465.2,blat.proc3825164.chain_605,blat.proc3825164.chain_606	4
scaffold_18	spliced_intron	8399580	8400469	+	asmbl_20831	none	STRG.21513.1,blat.proc3825174.chain_2580	2	STRG.21513.4,blat.proc3825174.chain_2583	2
scaffold_28	ends_in_intron	2808748	2808748	-	asmbl_38093	none	blat.proc3825162.chain_2599	1	STRG.29471.1,STRG.29471.2,blat.proc3825162.chain_2598,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	5
scaffold_13	spliced_intron	7266430	7266595	-	asmbl_9867,asmbl_9868,asmbl_9870	none	STRG.16029.1,blat.proc3825156.chain_940,blat.proc3825156.chain_941,blat.proc3825156.chain_943	4	blat.proc3825156.chain_939	1
scaffold_27	alt_acceptor	6782467	6782468	-	asmbl_37079,asmbl_37082	none	STRG.29050.3,STRG.29050.4,blat.proc3825162.chain_2278,blat.proc3825162.chain_2280	4	STRG.29050.1,STRG.29050.2,blat.proc3825162.chain_2276,blat.proc3825162.chain_2277,blat.proc3825162.chain_2279	5
scaffold_13	alt_donor	2480216	2480217	-	asmbl_9462	none	STRG.15554.2,blat.proc3825156.chain_445	2	STRG.15554.1,blat.proc3825156.chain_443	2
scaffold_19	starts_in_intron	8111533	8111533	-	asmbl_22273	none	blat.proc3825158.chain_3012	1	STRG.22264.1,blat.proc3825158.chain_3013	2
scaffold_1	alternate_exon	12168863	12168950	+	asmbl_2186	none	STRG.838.2	1	blat.proc3825164.chain_1006,blat.proc3825164.chain_1008	2
scaffold_9	alt_acceptor	12785469	12785470	-	asmbl_55408	none	STRG.11598.1,blat.proc3825154.chain_67	2	blat.proc3825154.chain_66	1
scaffold_12	alternate_exon	4103040	4103282	+	asmbl_7583	none	STRG.14597.3	1	STRG.14597.1	1
scaffold_3	alt_donor	4304754	4304755	-	asmbl_38800	none	STRG.3131.2	1	STRG.3131.1	1
scaffold_15	retained_intron	6961759	6962168	+	asmbl_15267	none	Trinity_GG_27305_c0_g1_i2,blat.proc3825172.chain_2907	2	STRG.18305.1,blat.proc3825172.chain_2906	2
scaffold_12	skipped_exon	1056407	1057445	+	asmbl_7457	none	STRG.14447.2	1	STRG.14447.1,STRG.14447.3,STRG.14447.4,blat.proc3825170.chain_2948	4
scaffold_14	starts_in_intron	15831399	15831399	-	asmbl_13755	none	blat.proc3825156.chain_2636	1	STRG.17828.1	1
scaffold_6	starts_in_intron	17383462	17383462	+	asmbl_47748	none	Trinity_GG_21955_c0_g1_i1,blat.proc3825168.chain_906	2	STRG.8444.1,STRG.8444.2,Trinity_GG_21955_c0_g1_i4,blat.proc3825168.chain_907	4
scaffold_2	ends_in_intron	19299273	19299273	-	asmbl_23863	none	Trinity_GG_1511_c0_g1_i1,blat.proc3825148.chain_2689	2	STRG.2798.1,STRG.2798.2,blat.proc3825148.chain_2685,blat.proc3825148.chain_2686,blat.proc3825148.chain_2690	5
scaffold_11	starts_in_intron	13649131	13649131	-	asmbl_7150	none	blat.proc3825154.chain_2704	1	STRG.14222.1,STRG.14222.2,blat.proc3825154.chain_2705,blat.proc3825154.chain_2706	4
scaffold_28	starts_in_intron	5586106	5586106	-	asmbl_38295	none	Trinity_GG_16662_c0_g1_i1,blat.proc3825162.chain_2892	2	STRG.29695.1,Trinity_GG_16662_c0_g1_i2,blat.proc3825162.chain_2891	3
scaffold_14	alt_acceptor	7234262	7234263	-	asmbl_13179	none	STRG.17154.1,STRG.17154.2,blat.proc3825156.chain_1949	3	STRG.17154.3,blat.proc3825156.chain_1950	2
scaffold_25	retained_intron	9337552	9337746	+	asmbl_33810	none	blat.proc3825178.chain_880	1	STRG.27762.1,blat.proc3825178.chain_878,blat.proc3825178.chain_879,blat.proc3825178.chain_881	4
scaffold_4	alternate_exon	5188786	5191231	-	asmbl_42562	none	STRG.4410.1,blat.proc3825150.chain_643	2	STRG.4410.2,blat.proc3825150.chain_641	2
scaffold_22	retained_exon	11476107	11476251	-	asmbl_29681	none	STRG.25494.1	1	STRG.25494.2	1
scaffold_5	retained_intron	14732294	14732395	-	asmbl_44616	none	Trinity_GG_3740_c0_g1_i1,blat.proc3825150.chain_2846	2	STRG.6676.1,blat.proc3825150.chain_2844,blat.proc3825150.chain_2845	3
scaffold_27	ends_in_intron	6268557	6268557	-	asmbl_37052	none	Trinity_GG_21323_c0_g1_i1	1	STRG.29018.1,STRG.29018.2,blat.proc3825162.chain_2245	3
scaffold_11	alt_donor	10268776	10268777	-	asmbl_6990,asmbl_6991	none	STRG.14036.2,blat.proc3825154.chain_2562,blat.proc3825154.chain_2564	3	STRG.14036.1,STRG.14036.3,blat.proc3825154.chain_2563,blat.proc3825154.chain_2565	4
scaffold_9	ends_in_intron	9605092	9605092	-	asmbl_55214	none	Trinity_GG_6285_c1_g1_i1,blat.proc3825152.chain_3600	2	STRG.11328.2	1
scaffold_5	alt_donor	14569230	14569231	-	asmbl_44599	none	STRG.6658.1,blat.proc3825150.chain_2785	2	STRG.6658.2	1
scaffold_23	alt_acceptor	10988338	10988339	-	asmbl_31186	none	Trinity_GG_14683_c0_g1_i5,blat.proc3825160.chain_3396	2	STRG.26306.1,STRG.26306.2,blat.proc3825160.chain_3397,blat.proc3825160.chain_3398	4
scaffold_5	ends_in_intron	10848614	10848614	+	asmbl_45700	none	STRG.6368.2,blat.proc3825166.chain_2524	2	STRG.6368.1,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	3
scaffold_20	alt_donor	11573166	11573167	-	asmbl_26159	none	STRG.23664.1,blat.proc3825160.chain_730	2	STRG.23664.2,STRG.23664.3,STRG.23664.4,blat.proc3825160.chain_731	4
scaffold_7	alt_acceptor	1233914	1233915	+	asmbl_49603	none	STRG.8637.4	1	STRG.8637.1,STRG.8637.2,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1074,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	12
scaffold_21	starts_in_intron	7914476	7914476	-	asmbl_27867	none	STRG.24325.2,blat.proc3825160.chain_1387	2	STRG.24325.1,blat.proc3825160.chain_1385	2
scaffold_12	alt_donor	14195837	14195838	-	asmbl_9001	none	STRG.15254.2	1	STRG.15254.1,blat.proc3825154.chain_3748	2
scaffold_3	alt_acceptor	6040381	6040382	-	asmbl_38881	none	STRG.3259.7	1	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.6	4
scaffold_12	ends_in_intron	14291526	14291526	-	asmbl_9007	none	Trinity_GG_8552_c3_g1_i1,blat.proc3825156.chain_71	2	STRG.15271.2	1
scaffold_5	alternate_exon	3534115	3534201	-	asmbl_43918	none	STRG.5827.2	1	STRG.5827.1,Trinity_GG_3282_c0_g1_i1,blat.proc3825150.chain_2032	3
scaffold_7	alternate_exon	8162448	8171086	+	asmbl_49960	none	STRG.9049.1,blat.proc3825168.chain_1534	2	STRG.9049.3,Trinity_GG_22317_c0_g2_i2,blat.proc3825168.chain_1533	3
scaffold_6	alt_acceptor	3326408	3326409	+	asmbl_46832	none	STRG.7340.1,blat.proc3825166.chain_3445	2	STRG.7340.2,STRG.7340.3,blat.proc3825166.chain_3446	3
scaffold_27	spliced_intron	2548208	2548242	+	asmbl_36094	none	blat.proc3825178.chain_1887	1	STRG.28732.1,STRG.28732.3,blat.proc3825178.chain_1886	3
scaffold_26	alternate_exon	9311532	9312441	+	asmbl_35224	none	STRG.28487.1	1	STRG.28487.3,blat.proc3825178.chain_1611	2
scaffold_5	ends_in_intron	1504193	1504193	-	asmbl_43854	none	blat.proc3825166.chain_1958	1	STRG.5708.1,blat.proc3825150.chain_1861,blat.proc3825166.chain_1948	3
scaffold_13	retained_intron	278905	279237	+	asmbl_10471	none	Trinity_GG_25812_c0_g1_i2,blat.proc3825172.chain_199	2	STRG.15434.1,STRG.15434.2,STRG.15434.3,STRG.15434.4,blat.proc3825172.chain_196,blat.proc3825172.chain_197,blat.proc3825172.chain_198	7
scaffold_10	spliced_intron	16475794	16476026	-	asmbl_5006	none	STRG.13119.1	1	STRG.13119.2,Trinity_GG_7353_c0_g1_i2,blat.proc3825154.chain_1717	3
scaffold_18	retained_intron	2394186	2394398	-	asmbl_19723	none	STRG.21118.2,Trinity_GG_11836_c0_g1_i1,blat.proc3825158.chain_2094,blat.proc3825158.chain_2095	4	Trinity_GG_11836_c0_g1_i4,blat.proc3825158.chain_2096	2
scaffold_6	alt_acceptor	17382266	17382267	+	asmbl_47749	none	STRG.8444.2	1	STRG.8444.1,Trinity_GG_21955_c0_g1_i4,blat.proc3825168.chain_907	3
scaffold_19	retained_intron	8805742	8805841	+	asmbl_21558	none	STRG.22329.3	1	STRG.22329.1,blat.proc3825174.chain_3335	2
scaffold_12	alt_donor	10539621	10539622	+	asmbl_7929	none	STRG.15023.1,Trinity_GG_25618_c0_g1_i2,blat.proc3825170.chain_3586	3	STRG.15023.2,Trinity_GG_25618_c0_g1_i1,blat.proc3825170.chain_3587	3
scaffold_21	alternate_exon	705871	706526	-	asmbl_27350	none	STRG.23759.1,Trinity_GG_13202_c0_g2_i1,blat.proc3825160.chain_796,blat.proc3825160.chain_799	4	Trinity_GG_13202_c0_g1_i4,blat.proc3825160.chain_797	2
scaffold_2	starts_in_intron	4124823	4124823	-	asmbl_23051	none	Trinity_GG_1007_c0_g1_i1,blat.proc3825148.chain_1791	2	STRG.1854.1,Trinity_GG_1007_c0_g1_i2,blat.proc3825148.chain_1790	3
scaffold_15	spliced_intron	4231266	4231387	+	asmbl_15127	none	Trinity_GG_27280_c0_g1_i5,blat.proc3825172.chain_2839	2	blat.proc3825172.chain_2836	1
scaffold_10	retained_intron	3063468	3063729	-	asmbl_4153	none	STRG.12127.1,Trinity_GG_6721_c0_g1_i2,blat.proc3825154.chain_626	3	STRG.12127.2,blat.proc3825154.chain_627	2
scaffold_7	starts_in_intron	7186847	7186847	+	asmbl_49900	none	STRG.8975.4,Trinity_GG_22284_c0_g1_i2,blat.proc3825168.chain_1481	3	STRG.8975.1,STRG.8975.2,STRG.8975.3,blat.proc3825168.chain_1480,blat.proc3825168.chain_1482	5
scaffold_4	alt_acceptor	13417536	13417537	+	asmbl_41788,asmbl_41789,asmbl_41793	none	STRG.4977.1,STRG.4977.3,blat.proc3825166.chain_1336,blat.proc3825166.chain_1337	4	STRG.4977.2,blat.proc3825166.chain_1334,blat.proc3825166.chain_1335	3
scaffold_5	alt_acceptor	13023168	13023169	+	asmbl_45838	none	STRG.6532.1,blat.proc3825166.chain_2716	2	STRG.6532.3	1
scaffold_19	retained_intron	8124919	8125012	-	asmbl_22277	none	blat.proc3825158.chain_3078	1	STRG.22265.1,blat.proc3825158.chain_3077	2
scaffold_3	spliced_intron	17338585	17338883	-	asmbl_39541	none	STRG.3962.1,blat.proc3825150.chain_71	2	Trinity_GG_2142_c0_g1_i3,blat.proc3825150.chain_72	2
scaffold_19	starts_in_intron	9386923	9386923	+	asmbl_21581	none	blat.proc3825174.chain_3353	1	STRG.22363.1,blat.proc3825174.chain_3355	2
scaffold_5	ends_in_intron	6564635	6564635	+	asmbl_45438	none	Trinity_GG_20591_c0_g1_i3	1	STRG.6054.1,blat.proc3825166.chain_2217	2
scaffold_2	alt_acceptor	9322557	9322558	-	asmbl_23385	none	Trinity_GG_1187_c1_g1_i2,blat.proc3825148.chain_2158,blat.proc3825148.chain_2161	3	STRG.2178.2,STRG.2178.4,blat.proc3825148.chain_2159	3
scaffold_16	ends_in_intron	12345024	12345024	+	asmbl_16637	none	blat.proc3825174.chain_659	1	STRG.19745.1,blat.proc3825174.chain_658	2
scaffold_12	skipped_exon	10604821	10606018	+	asmbl_7946	none	STRG.15036.2,blat.proc3825170.chain_3580	2	STRG.15036.1,STRG.15036.4,blat.proc3825170.chain_3579	3
scaffold_5	spliced_intron	4948983	4949120	+	asmbl_45320	none	STRG.5954.4	1	STRG.5954.2,STRG.5954.3	2
scaffold_17	alt_donor	9088921	9088922	-	asmbl_18150,asmbl_18152	none	STRG.20538.3,blat.proc3825158.chain_1560	2	STRG.20538.4	1
scaffold_1	alt_acceptor	7290683	7290684	+	asmbl_1898	none	STRG.520.2	1	STRG.520.1,Trinity_GG_17630_c0_g1_i5,blat.proc3825164.chain_639	3
scaffold_23	ends_in_intron	7064399	7064399	+	asmbl_31671	none	blat.proc3825176.chain_2974	1	STRG.26040.1,blat.proc3825176.chain_2973	2
scaffold_2	alt_acceptor	2993171	2993172	+	asmbl_24266	none	STRG.1739.1,blat.proc3825164.chain_1904	2	STRG.1739.2	1
scaffold_10	alt_acceptor	10503091	10503092	-	asmbl_4743	none	STRG.12737.2	1	STRG.12737.1,blat.proc3825154.chain_1355	2
scaffold_3	skipped_exon	9843938	9845789	-	asmbl_39070	none	STRG.3462.2,blat.proc3825148.chain_3337	2	STRG.3462.1,blat.proc3825148.chain_3339	2
scaffold_8	retained_exon	17973918	17974029	-	asmbl_52498	none	STRG.10702.2	1	STRG.10702.1,Trinity_GG_5951_c0_g1_i1,blat.proc3825152.chain_2975	3
scaffold_13	starts_in_intron	522485	522485	+	asmbl_10491	none	Trinity_GG_25810_c0_g1_i10,blat.proc3825172.chain_187	2	STRG.15449.1,STRG.15449.2,STRG.15449.3,STRG.15449.4,STRG.15449.5,Trinity_GG_25810_c0_g1_i5,blat.proc3825172.chain_179,blat.proc3825172.chain_180,blat.proc3825172.chain_181,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_188	12
scaffold_2	retained_intron	950718	951959	+	asmbl_24169	none	Trinity_GG_18238_c0_g1_i8	1	STRG.1574.4	1
scaffold_11	skipped_exon	6251734	6253377	+	asmbl_5621	none	STRG.13692.1,blat.proc3825170.chain_2239	2	STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237	3
scaffold_9	ends_in_intron	5756481	5756481	-	asmbl_55031	none	Trinity_GG_6190_c0_g1_i6,blat.proc3825152.chain_3398	2	STRG.11147.2	1
scaffold_26	ends_in_intron	5043943	5043943	+	asmbl_34946	none	blat.proc3825176.chain_2466	1	STRG.28240.1,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1169,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180	10
scaffold_28	spliced_intron	5638196	5638636	-	asmbl_38306,asmbl_38307,asmbl_38311,asmbl_38313	none	STRG.29706.1,STRG.29706.2,STRG.29706.4,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854,blat.proc3825162.chain_2855,blat.proc3825162.chain_2858	7	STRG.29706.3,blat.proc3825162.chain_2859	2
scaffold_12	alt_acceptor	5512515	5512516	+	asmbl_7660,asmbl_7661	none	STRG.14707.3,blat.proc3825170.chain_3235	2	STRG.14707.1,STRG.14707.2,blat.proc3825170.chain_3234	3
scaffold_11	skipped_exon	8102683	8103519	+	asmbl_5733	none	STRG.13823.4	1	STRG.13823.1,STRG.13823.2,STRG.13823.3,blat.proc3825170.chain_2349,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	6
scaffold_18	retained_intron	1899809	1900625	-	asmbl_19657,asmbl_19662,asmbl_19664	none	STRG.21081.7,STRG.21081.9,blat.proc3825158.chain_2010	3	STRG.21081.10,STRG.21081.3,STRG.21081.6,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	10
scaffold_12	alt_donor	14882077	14882078	+	asmbl_8093,asmbl_8094	none	STRG.15273.1,STRG.15273.3,blat.proc3825170.chain_3713	3	STRG.15273.2	1
scaffold_3	spliced_intron	10628351	10628697	+	asmbl_40286,asmbl_40287,asmbl_40289	none	STRG.3513.2,STRG.3513.4,blat.proc3825164.chain_3683,blat.proc3825164.chain_3687	4	blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3688	3
scaffold_14	alt_donor	15346295	15346296	-	asmbl_13711	none	STRG.17765.1,Trinity_GG_9998_c0_g1_i4,blat.proc3825156.chain_2605	3	blat.proc3825156.chain_2607	1
scaffold_7	alternate_exon	11151143	11151188	+	asmbl_50156	none	STRG.9261.1,Trinity_GG_22446_c0_g1_i1,blat.proc3825168.chain_1756	3	STRG.9261.2,STRG.9261.3,Trinity_GG_22446_c0_g1_i2,blat.proc3825168.chain_1757	4
scaffold_16	alt_donor	14552847	14552848	+	asmbl_16685,asmbl_16686,asmbl_16690	none	STRG.19851.1,STRG.19851.2,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i3,blat.proc3825174.chain_729,blat.proc3825174.chain_730	6	Trinity_GG_28180_c0_g1_i4,blat.proc3825174.chain_733	2
scaffold_7	alt_acceptor	2490759	2490760	+	asmbl_49650	none	blat.proc3825168.chain_1196	1	Trinity_GG_22100_c0_g1_i3,blat.proc3825168.chain_1192,blat.proc3825168.chain_1193,blat.proc3825168.chain_1194,blat.proc3825168.chain_1195	5
scaffold_4	skipped_exon	16433810	16434730	-	asmbl_43170	none	STRG.5219.1	1	STRG.5219.2,STRG.5219.3	2
scaffold_21	alt_acceptor	3015597	3015598	+	asmbl_28435	none	blat.proc3825176.chain_1103	1	STRG.23928.1,STRG.23928.2,blat.proc3825176.chain_1102,blat.proc3825176.chain_1104,blat.proc3825176.chain_1105,blat.proc3825176.chain_1106	6
scaffold_13	spliced_intron	14015268	14015390	-	asmbl_10167	none	blat.proc3825156.chain_1324,blat.proc3825156.chain_1326	2	blat.proc3825156.chain_1323	1
scaffold_25	alt_donor	6095935	6095936	-	asmbl_34326	none	STRG.27501.1,Trinity_GG_15426_c0_g1_i1,Trinity_GG_15426_c0_g1_i2,blat.proc3825162.chain_886,blat.proc3825162.chain_887	5	Trinity_GG_15426_c0_g1_i4,blat.proc3825162.chain_888	2
scaffold_6	retained_exon	13250309	13250661	-	asmbl_48901	none	STRG.8085.1	1	STRG.8085.2	1
scaffold_1	ends_in_intron	2790048	2790048	+	asmbl_1555	none	Trinity_GG_17407_c3_g1_i1,blat.proc3825164.chain_240	2	STRG.181.1,STRG.181.2,blat.proc3825164.chain_236,blat.proc3825164.chain_237	4
scaffold_25	spliced_intron	4458047	4458215	+	asmbl_33504	none	STRG.27378.1,blat.proc3825178.chain_456	2	Trinity_GG_32391_c2_g1_i2,blat.proc3825178.chain_455	2
scaffold_1611	spliced_intron	1827	1982	+	asmbl_17600	none	STRG.30634.1,blat.proc3825178.chain_3620	2	Trinity_GG_34236_c0_g1_i2	1
scaffold_28	retained_intron	2404241	2404447	+	asmbl_37363,asmbl_37365,asmbl_37366	none	STRG.29414.1,STRG.29414.3,STRG.29414.4,blat.proc3825178.chain_2579,blat.proc3825178.chain_2581,blat.proc3825178.chain_2582	6	STRG.29414.2,blat.proc3825178.chain_2580	2
scaffold_2	starts_in_intron	7216136	7216136	+	asmbl_24539,asmbl_24547	none	STRG.2054.5,Trinity_GG_18495_c0_g1_i4,Trinity_GG_18495_c0_g1_i9,blat.proc3825164.chain_2265,blat.proc3825164.chain_2266	5	STRG.2054.1,STRG.2054.2,STRG.2054.4,Trinity_GG_18495_c0_g1_i3,Trinity_GG_18495_c0_g1_i7,blat.proc3825164.chain_2268,blat.proc3825164.chain_2271,blat.proc3825164.chain_2274	8
scaffold_13	skipped_exon	11585750	11588600	+	asmbl_11292,asmbl_11295,asmbl_11296,asmbl_11297	none	STRG.16316.1,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035	4	STRG.16316.3,STRG.16316.4,blat.proc3825172.chain_1028,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030,blat.proc3825172.chain_1036	6
scaffold_5	starts_in_intron	7109171	7109171	-	asmbl_44164	none	blat.proc3825150.chain_2312,blat.proc3825150.chain_2313	2	STRG.6124.1	1
scaffold_19	starts_in_intron	12480120	12480120	-	asmbl_22489	none	STRG.22587.3	1	STRG.22587.1	1
scaffold_1	skipped_exon	18485288	18486788	-	asmbl_1107,asmbl_1116	none	STRG.1298.2,STRG.1298.4,blat.proc3825148.chain_1322	3	blat.proc3825148.chain_1320,blat.proc3825148.chain_1321	2
scaffold_10	retained_intron	8905016	8905140	-	asmbl_4643	none	STRG.12635.2	1	STRG.12635.1,STRG.12635.3,blat.proc3825154.chain_1178	3
scaffold_7	alternate_exon	11231755	11231779	+	asmbl_50162	none	STRG.9269.1	1	STRG.9269.2,blat.proc3825168.chain_1763	2
scaffold_28	alt_donor	3318284	3318285	+	asmbl_37472	none	STRG.29548.2,blat.proc3825178.chain_2656	2	STRG.29548.1,blat.proc3825178.chain_2655	2
scaffold_8	alternate_exon	8172899	8173019	+	asmbl_53006	none	STRG.10103.3	1	STRG.10103.1,STRG.10103.2	2
scaffold_8	starts_in_intron	17281215	17281215	-	asmbl_52440	none	Trinity_GG_5894_c1_g1_i1,blat.proc3825152.chain_2860	2	STRG.10651.1,blat.proc3825152.chain_2857,blat.proc3825152.chain_2858,blat.proc3825152.chain_2859	4
scaffold_3	retained_intron	13463114	13463211	+	asmbl_40442	none	blat.proc3825166.chain_150	1	STRG.3697.1,blat.proc3825166.chain_149,blat.proc3825166.chain_151	3
scaffold_11	retained_intron	6251734	6253377	+	asmbl_5618	none	STRG.13692.3,Trinity_GG_24860_c0_g1_i1,Trinity_GG_24860_c1_g1_i1,blat.proc3825170.chain_2240	4	STRG.13692.1,blat.proc3825170.chain_2239	2
scaffold_13	spliced_intron	2271926	2272065	-	asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9446,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_396,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9	STRG.15548.3,STRG.15548.4,Trinity_GG_8695_c0_g1_i10,blat.proc3825156.chain_394	4
scaffold_10	ends_in_intron	13511653	13511653	-	asmbl_4895	none	blat.proc3825154.chain_1541	1	STRG.12948.1,STRG.12948.2,blat.proc3825154.chain_1540,blat.proc3825154.chain_1542	4
scaffold_13	retained_intron	7501582	7501940	-	asmbl_9891,asmbl_9893,asmbl_9894	none	blat.proc3825156.chain_900,blat.proc3825156.chain_901,blat.proc3825156.chain_905	3	STRG.16047.1,STRG.16047.2,STRG.16047.3,STRG.16047.4,blat.proc3825156.chain_899,blat.proc3825156.chain_902,blat.proc3825156.chain_903,blat.proc3825156.chain_904,blat.proc3825156.chain_906,blat.proc3825156.chain_908,blat.proc3825156.chain_909	11
scaffold_1	starts_in_intron	12452907	12452907	+	asmbl_2225,asmbl_2226	none	blat.proc3825164.chain_1033,blat.proc3825164.chain_1034	2	STRG.860.1,blat.proc3825164.chain_1032	2
scaffold_8	retained_exon	2851268	2851381	-	asmbl_51717	none	STRG.9813.1,blat.proc3825152.chain_2092	2	STRG.9813.2,blat.proc3825152.chain_2093	2
scaffold_21	alt_donor	1300281	1300282	-	asmbl_27404,asmbl_27409	none	STRG.23810.3,STRG.23810.5,Trinity_GG_13281_c0_g1_i3,blat.proc3825160.chain_951	4	STRG.23810.1,STRG.23810.4,Trinity_GG_13281_c0_g1_i1,Trinity_GG_13281_c0_g1_i2,blat.proc3825160.chain_949,blat.proc3825160.chain_950	6
scaffold_28	alt_donor	819643	819644	-	asmbl_37943	none	STRG.29295.2	1	STRG.29295.1,blat.proc3825162.chain_2457	2
scaffold_23	alt_acceptor	7402821	7402822	+	asmbl_31694	none	STRG.26061.1	1	STRG.26061.2,STRG.26061.3	2
scaffold_17	alternate_exon	1304827	1304956	+	asmbl_18600	none	STRG.19968.1,blat.proc3825174.chain_858	2	STRG.19968.2	1
scaffold_446	retained_exon	5601	5738	+	asmbl_43716	none	STRG.30330.1,blat.proc3825178.chain_3420	2	STRG.30330.2,blat.proc3825178.chain_3421	2
scaffold_4	starts_in_intron	16664657	16664657	+	asmbl_41992	none	Trinity_GG_20222_c0_g1_i2,blat.proc3825166.chain_1603	2	STRG.5252.2,Trinity_GG_20222_c0_g1_i3,blat.proc3825166.chain_1601,blat.proc3825166.chain_1602,blat.proc3825166.chain_1604	5
scaffold_10	alternate_exon	9070391	9070521	-	asmbl_4674	none	STRG.12658.1	1	STRG.12658.2,STRG.12658.3,blat.proc3825154.chain_1159,blat.proc3825154.chain_1160	4
scaffold_9	starts_in_intron	17791145	17791145	-	asmbl_55683	none	blat.proc3825154.chain_357	1	STRG.11865.1,STRG.11865.2,Trinity_GG_6570_c0_g1_i2,Trinity_GG_6570_c0_g1_i3,blat.proc3825154.chain_356,blat.proc3825154.chain_358	6
scaffold_18	retained_intron	2835065	2835573	+	asmbl_20426	none	Trinity_GG_28933_c0_g1_i5,blat.proc3825174.chain_2054	2	STRG.21142.5,blat.proc3825174.chain_2048	2
scaffold_10	starts_in_intron	762784	762784	-	asmbl_4005	none	blat.proc3825154.chain_532	1	STRG.11960.1,STRG.11960.2,Trinity_GG_6663_c0_g1_i1,Trinity_GG_6663_c0_g1_i2,blat.proc3825154.chain_530,blat.proc3825154.chain_531	6
scaffold_25	starts_in_intron	6304783	6304783	+	asmbl_33610	none	Trinity_GG_32442_c4_g1_i1,blat.proc3825178.chain_566	2	STRG.27515.1,STRG.27515.2,Trinity_GG_32442_c0_g1_i14,blat.proc3825178.chain_553,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_557,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	10
scaffold_9	alt_acceptor	11876500	11876501	+	asmbl_54388	none	Trinity_GG_23736_c0_g1_i2,blat.proc3825170.chain_329	2	STRG.11509.1	1
scaffold_24	spliced_intron	8750513	8750667	-	asmbl_33103	none	STRG.26893.2,blat.proc3825162.chain_242	2	STRG.26893.1,blat.proc3825162.chain_243,blat.proc3825162.chain_244,blat.proc3825162.chain_245	4
scaffold_19	skipped_exon	6407454	6408818	-	asmbl_22216	none	blat.proc3825158.chain_3003	1	STRG.22169.3,blat.proc3825158.chain_3005	2
scaffold_1	alternate_exon	3605673	3605719	+	asmbl_1611	none	STRG.227.1,blat.proc3825164.chain_309	2	STRG.227.2	1
scaffold_4	skipped_exon	16370271	16372613	-	asmbl_43163	none	STRG.5206.2	1	STRG.5206.1,blat.proc3825150.chain_1360	2
scaffold_13	ends_in_intron	7451258	7451258	+	asmbl_11053	none	blat.proc3825172.chain_744	1	STRG.16039.1,blat.proc3825172.chain_745,blat.proc3825172.chain_747	3
scaffold_11	retained_intron	4756929	4757259	+	asmbl_5519	none	Trinity_GG_24781_c1_g1_i1,blat.proc3825170.chain_2119	2	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2116,blat.proc3825170.chain_2117,blat.proc3825170.chain_2118	5
scaffold_3	ends_in_intron	7287147	7287147	-	asmbl_38960	none	STRG.3330.4,Trinity_GG_1803_c0_g1_i4,blat.proc3825148.chain_3213	3	STRG.3330.1,STRG.3330.2,STRG.3330.3,blat.proc3825148.chain_3215,blat.proc3825148.chain_3216,blat.proc3825148.chain_3217	6
scaffold_3	spliced_intron	2269178	2269345	+	asmbl_39905	none	STRG.3032.1,blat.proc3825164.chain_3223	2	STRG.3032.2,blat.proc3825164.chain_3222	2
scaffold_5	retained_intron	11990962	11991389	-	asmbl_44436	none	blat.proc3825150.chain_2616	1	STRG.6453.1,STRG.6453.2,STRG.6453.4,STRG.6453.5,STRG.6453.9,blat.proc3825150.chain_2612,blat.proc3825150.chain_2614,blat.proc3825150.chain_2615	8
scaffold_15	spliced_intron	6780650	6780734	-	asmbl_14251	none	STRG.18292.1,blat.proc3825156.chain_3126	2	STRG.18292.2	1
scaffold_22	retained_exon	9718220	9719198	+	asmbl_30316	none	STRG.25308.2	1	STRG.25308.1,blat.proc3825176.chain_2309	2
scaffold_3	spliced_intron	1487982	1488142	+	asmbl_39857	none	STRG.2973.2	1	STRG.2973.1,Trinity_GG_18953_c0_g1_i3,blat.proc3825164.chain_3143	3
scaffold_4	alt_donor	13763506	13763507	-	asmbl_43004	none	STRG.4997.1,blat.proc3825150.chain_1143	2	blat.proc3825150.chain_1141	1
scaffold_2	ends_in_intron	4924791	4924791	-	asmbl_23117	none	Trinity_GG_1071_c0_g1_i3,blat.proc3825148.chain_1914	2	STRG.1913.1,blat.proc3825148.chain_1912,blat.proc3825148.chain_1913	3
scaffold_11	alt_acceptor	788020	788021	+	asmbl_5299	none	STRG.13279.2,blat.proc3825170.chain_1838	2	STRG.13279.1,blat.proc3825170.chain_1839	2
scaffold_13	spliced_intron	6396903	6397183	+	asmbl_10923,asmbl_10925,asmbl_10926,asmbl_10930	none	STRG.15929.2,STRG.15929.3,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_654,blat.proc3825172.chain_655	8	Trinity_GG_26055_c0_g1_i2,blat.proc3825172.chain_653	2
scaffold_20	retained_exon	10249290	10249425	-	asmbl_26095	none	STRG.23572.1,blat.proc3825160.chain_660,blat.proc3825160.chain_663	3	STRG.23572.2,blat.proc3825160.chain_664	2
scaffold_4	ends_in_intron	4094392	4094392	+	asmbl_41222	none	blat.proc3825166.chain_701	1	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,STRG.4315.5,Trinity_GG_19675_c0_g1_i17,blat.proc3825166.chain_704,blat.proc3825166.chain_707,blat.proc3825166.chain_708,blat.proc3825166.chain_711	10
scaffold_14	alternate_exon	13583158	13583207	-	asmbl_13644	none	STRG.17639.2,blat.proc3825156.chain_2488	2	STRG.17639.1,blat.proc3825156.chain_2487	2
scaffold_10	alternate_exon	9554352	9554426	+	asmbl_3402	none	Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1287	2	STRG.12711.2,STRG.12711.3	2
scaffold_26	retained_intron	2264373	2264869	+	asmbl_34741	none	STRG.27957.1,blat.proc3825178.chain_1004	2	STRG.27957.2,blat.proc3825178.chain_1005	2
scaffold_26	retained_intron	9772322	9772792	+	asmbl_35256,asmbl_35258,asmbl_35262,asmbl_35265	none	STRG.28516.3,STRG.28516.4,STRG.28516.5,Trinity_GG_33086_c0_g1_i6,blat.proc3825178.chain_1637,blat.proc3825178.chain_1639	6	STRG.28516.1,STRG.28516.7,blat.proc3825178.chain_1636,blat.proc3825178.chain_1641	4
scaffold_11	skipped_exon	5125046	5125362	-	asmbl_6656	none	STRG.13605.3	1	STRG.13605.1,STRG.13605.2,blat.proc3825154.chain_2107,blat.proc3825154.chain_2108	4
scaffold_23	retained_exon	5618925	5619884	-	asmbl_30926	none	STRG.25937.2,blat.proc3825160.chain_3059	2	STRG.25937.4,Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057	3
scaffold_23	skipped_exon	7631700	7633531	-	asmbl_31040,asmbl_31043	none	STRG.26076.2,STRG.26076.3,blat.proc3825160.chain_3258	3	STRG.26076.1,blat.proc3825160.chain_3259	2
scaffold_16	ends_in_intron	3869586	3869586	-	asmbl_17012	none	Trinity_GG_10785_c0_g1_i3,blat.proc3825158.chain_334	2	STRG.19196.2,blat.proc3825158.chain_333	2
scaffold_11	alternate_exon	17070591	17070708	-	asmbl_7240,asmbl_7241	none	STRG.14371.1,STRG.14371.2,blat.proc3825154.chain_2803,blat.proc3825154.chain_2806	4	STRG.14371.3,blat.proc3825154.chain_2805	2
scaffold_10	retained_intron	7684017	7685179	+	asmbl_3296	none	STRG.12557.4,blat.proc3825170.chain_1164,blat.proc3825170.chain_1168	3	STRG.12557.2,STRG.12557.5,blat.proc3825170.chain_1166,blat.proc3825170.chain_1167,blat.proc3825170.chain_1170	5
scaffold_17	alt_donor	3143575	3143576	-	asmbl_17804,asmbl_17806	none	STRG.20099.1,STRG.20099.3,Trinity_GG_11251_c0_g1_i1,blat.proc3825158.chain_1092	4	STRG.20099.2	1
scaffold_24	spliced_intron	8737517	8737605	-	asmbl_33097,asmbl_33099,asmbl_33100	none	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_184	4	blat.proc3825162.chain_183	1
scaffold_1	retained_intron	12334369	12335043	-	asmbl_701,asmbl_702,asmbl_703,asmbl_704	none	Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_837	2	blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839	3
scaffold_6	starts_in_intron	16291436	16291436	-	asmbl_49111	none	blat.proc3825152.chain_793	1	STRG.8352.1,blat.proc3825152.chain_790,blat.proc3825152.chain_791	3
scaffold_10	alt_acceptor	6413092	6413093	-	asmbl_4453	none	blat.proc3825154.chain_1025	1	STRG.12469.1	1
scaffold_26	retained_intron	10097149	10097600	-	asmbl_35808,asmbl_35812	none	Trinity_GG_15947_c0_g1_i3,blat.proc3825162.chain_1716,blat.proc3825162.chain_1718	3	STRG.28531.1,blat.proc3825162.chain_1717	2
scaffold_15	spliced_intron	7254010	7254095	-	asmbl_14287	none	STRG.18323.1,blat.proc3825156.chain_3049	2	Trinity_GG_10241_c0_g1_i2	1
scaffold_825	alt_donor	3657	3658	+	asmbl_53685	none	STRG.30482.2	1	STRG.30482.1	1
scaffold_9	alt_donor	14820043	14820044	-	asmbl_55494,asmbl_55498,asmbl_55501,asmbl_55502,asmbl_55504	none	STRG.11702.1,STRG.11702.3,STRG.11702.7,STRG.11702.8,Trinity_GG_6457_c0_g1_i2,blat.proc3825154.chain_158,blat.proc3825154.chain_160,blat.proc3825154.chain_161	8	blat.proc3825154.chain_162	1
scaffold_9	retained_intron	6920728	6921103	-	asmbl_55100	none	STRG.11207.1,blat.proc3825152.chain_3453	2	STRG.11207.2,blat.proc3825152.chain_3454,blat.proc3825152.chain_3455	3
scaffold_18	ends_in_intron	3792283	3792283	-	asmbl_19773,asmbl_19774	none	Trinity_GG_11882_c0_g1_i2,Trinity_GG_11882_c0_g1_i8,blat.proc3825158.chain_2172,blat.proc3825158.chain_2175	4	STRG.21197.1,STRG.21197.3,blat.proc3825158.chain_2176,blat.proc3825158.chain_2177,blat.proc3825158.chain_2178,blat.proc3825158.chain_2179	6
scaffold_15	alternate_exon	6883099	6883630	-	asmbl_14261	none	Trinity_GG_10293_c0_g1_i4,blat.proc3825156.chain_3155	2	STRG.18301.1,STRG.18301.3,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153	7
scaffold_12	retained_exon	14104510	14104564	-	asmbl_8981,asmbl_8982	none	Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_88,blat.proc3825156.chain_97	3	STRG.15241.1,Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i4,blat.proc3825156.chain_87,blat.proc3825156.chain_91,blat.proc3825156.chain_92,blat.proc3825156.chain_93,blat.proc3825156.chain_94	8
scaffold_60	ends_in_intron	21662	21662	-	asmbl_49456	none	Trinity_GG_16880_c1_g1_i1,blat.proc3825162.chain_3254	2	blat.proc3825162.chain_3255	1
scaffold_2	alternate_exon	8855524	8855720	+	asmbl_24645	none	STRG.2137.2,Trinity_GG_18519_c0_g1_i2,blat.proc3825164.chain_2323	3	STRG.2137.3	1
scaffold_20	starts_in_intron	1716148	1716148	-	asmbl_25609	none	STRG.22914.1,blat.proc3825160.chain_3	2	blat.proc3825160.chain_4	1
scaffold_8	starts_in_intron	8538348	8538348	-	asmbl_51956	none	blat.proc3825152.chain_2341	1	STRG.10109.1,blat.proc3825152.chain_2342	2
scaffold_9	retained_intron	11794319	11794485	-	asmbl_55303,asmbl_55308	none	STRG.11496.3,blat.proc3825152.chain_3685	2	STRG.11496.1,blat.proc3825152.chain_3684,blat.proc3825152.chain_3686	3
scaffold_3026	retained_intron	358	614	+	asmbl_40912	none	STRG.30816.2,blat.proc3825178.chain_3715	2	STRG.30816.1	1
scaffold_10	starts_in_intron	8778692	8778692	+	asmbl_3332	none	Trinity_GG_24275_c0_g1_i2,blat.proc3825170.chain_1235	2	STRG.12630.1,blat.proc3825170.chain_1234	2
scaffold_15	alternate_exon	15345685	15346020	+	asmbl_15753	none	STRG.18919.2	1	STRG.18919.4,blat.proc3825172.chain_3554	2
scaffold_28	starts_in_intron	2302467	2302467	-	asmbl_38038	none	blat.proc3825162.chain_2571	1	STRG.29403.1,STRG.29403.2	2
scaffold_4	starts_in_intron	19216387	19216387	+	asmbl_42128	none	Trinity_GG_20332_c0_g1_i3,blat.proc3825166.chain_1790	2	STRG.5507.1,blat.proc3825166.chain_1791	2
scaffold_10	spliced_intron	8331786	8332060	-	asmbl_4577,asmbl_4579,asmbl_4580	none	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1187,blat.proc3825154.chain_1189,blat.proc3825154.chain_1192	5	blat.proc3825154.chain_1190	1
scaffold_4	alt_acceptor	17162492	17162493	+	asmbl_42044	none	STRG.5318.1	1	STRG.5318.2	1
scaffold_70	alternate_exon	7836	7841	-	asmbl_51596	none	Trinity_GG_16893_c0_g1_i1,blat.proc3825162.chain_3271,blat.proc3825162.chain_3272	3	STRG.30108.1,STRG.30108.2,blat.proc3825178.chain_3226	3
scaffold_19	spliced_intron	11481997	11482175	-	asmbl_22403,asmbl_22404,asmbl_22409,asmbl_22414	none	STRG.22486.1,STRG.22486.2,STRG.22486.3,blat.proc3825158.chain_3243,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	7	Trinity_GG_12512_c0_g1_i12,blat.proc3825158.chain_3242	2
scaffold_2	spliced_intron	16288201	16288293	+	asmbl_25108,asmbl_25109,asmbl_25112,asmbl_25114	none	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2851,blat.proc3825164.chain_2852	4	blat.proc3825164.chain_2850	1
scaffold_13	spliced_intron	11601123	11601382	+	asmbl_11287,asmbl_11289,asmbl_11291,asmbl_11292,asmbl_11294,asmbl_11295	none	STRG.16316.1,STRG.16316.3,STRG.16316.7,blat.proc3825172.chain_1029,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	6	blat.proc3825172.chain_1028,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1033,blat.proc3825172.chain_1034	5
scaffold_1	spliced_intron	5748921	5749003	+	asmbl_1785,asmbl_1786,asmbl_1787	none	STRG.378.1,STRG.378.2,STRG.378.3,blat.proc3825164.chain_513,blat.proc3825164.chain_516	5	blat.proc3825164.chain_514	1
scaffold_2	alternate_exon	16079640	16079698	-	asmbl_23664	none	STRG.2557.3	1	STRG.2557.1,STRG.2557.2,blat.proc3825148.chain_2488	3
scaffold_11	retained_exon	6504884	6505023	+	asmbl_5629	none	STRG.13690.1,Trinity_GG_24853_c0_g1_i2,blat.proc3825170.chain_2228	3	STRG.13690.2	1
scaffold_14	retained_intron	1067639	1067750	+	asmbl_11788,asmbl_11791,asmbl_11793,asmbl_11794,asmbl_11798	none	STRG.16766.1,STRG.16766.3,STRG.16766.4,STRG.16766.5,blat.proc3825172.chain_1536,blat.proc3825172.chain_1537	6	STRG.16766.2,blat.proc3825172.chain_1533,blat.proc3825172.chain_1535,blat.proc3825172.chain_1539	4
scaffold_2	spliced_intron	9790090	9790374	+	asmbl_24685,asmbl_24689,asmbl_24690	none	STRG.2185.1,blat.proc3825164.chain_2361,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	4	Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2364	2
scaffold_7	alternate_exon	10551753	10551816	+	asmbl_50132	none	STRG.9232.1	1	STRG.9232.2,Trinity_GG_22414_c0_g1_i1,blat.proc3825168.chain_1701	3
scaffold_24	retained_intron	7721535	7721612	-	asmbl_33052	none	blat.proc3825162.chain_196	1	STRG.26818.1,blat.proc3825162.chain_195	2
scaffold_28	spliced_intron	2724505	2724705	+	asmbl_37406,asmbl_37407,asmbl_37408	none	STRG.29459.1,STRG.29459.2,STRG.29459.3	3	blat.proc3825178.chain_2681,blat.proc3825178.chain_2684	2
scaffold_2	retained_intron	888918	889046	+	asmbl_24128,asmbl_24132,asmbl_24133,asmbl_24135	none	STRG.1565.1,STRG.1565.2,STRG.1565.3,STRG.1565.4,Trinity_GG_18210_c1_g1_i3,blat.proc3825164.chain_1713	6	STRG.1565.5,blat.proc3825164.chain_1715	2
scaffold_5	alt_acceptor	7400859	7400860	+	asmbl_45497	none	STRG.6136.1,Trinity_GG_20664_c1_g1_i1,blat.proc3825166.chain_2353	3	STRG.6136.2,blat.proc3825166.chain_2354	2
scaffold_7	alt_donor	9784421	9784422	-	asmbl_51067	none	STRG.9172.2	1	STRG.9172.1,blat.proc3825152.chain_1517,blat.proc3825152.chain_1518	3
scaffold_8	retained_intron	11760968	11761396	-	asmbl_52164	none	STRG.10380.1,blat.proc3825152.chain_2603	2	STRG.10380.3	1
scaffold_8	alt_acceptor	11303795	11303796	+	asmbl_53221	none	STRG.10340.1,blat.proc3825168.chain_2889	2	STRG.10340.2,blat.proc3825168.chain_2888	2
scaffold_15	starts_in_intron	12605276	12605276	+	asmbl_15585	none	blat.proc3825172.chain_3358	1	STRG.18714.1,STRG.18714.2,blat.proc3825172.chain_3357,blat.proc3825172.chain_3359	4
scaffold_19	ends_in_intron	12425527	12425527	+	asmbl_21798	none	blat.proc3825174.chain_3593	1	STRG.22571.1	1
scaffold_22	alt_acceptor	4583195	4583196	+	asmbl_30033	none	STRG.24891.2	1	STRG.24891.1,blat.proc3825176.chain_1996	2
scaffold_22	ends_in_intron	21224	21224	+	asmbl_29795	none	blat.proc3825176.chain_1758	1	blat.proc3825176.chain_1759	1
scaffold_5	spliced_intron	15766384	15766471	+	asmbl_46014,asmbl_46019	none	STRG.6771.1,blat.proc3825166.chain_2917,blat.proc3825166.chain_2922	3	blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2918,blat.proc3825166.chain_2920,blat.proc3825166.chain_2921,blat.proc3825166.chain_2923	6
scaffold_6	skipped_exon	11482302	11482860	+	asmbl_47330,asmbl_47332	none	STRG.7943.3,blat.proc3825168.chain_310	2	STRG.7943.4	1
scaffold_8	starts_in_intron	10862577	10862577	-	asmbl_52124	none	Trinity_GG_5758_c1_g1_i1,blat.proc3825152.chain_2590	2	STRG.10312.1,STRG.10312.2,STRG.10312.3,blat.proc3825152.chain_2589	4
scaffold_2	spliced_intron	4839101	4839436	-	asmbl_23103	none	STRG.1905.1	1	Trinity_GG_1073_c0_g1_i5,blat.proc3825148.chain_1918,blat.proc3825148.chain_1922	3
scaffold_26	alternate_exon	9610402	9611762	+	asmbl_35249	none	STRG.28513.3	1	STRG.28513.2,Trinity_GG_33085_c0_g1_i1,blat.proc3825178.chain_1632	3
scaffold_1	alternate_exon	20007380	20007995	+	asmbl_2602	none	STRG.1368.1,Trinity_GG_18075_c0_g1_i2,blat.proc3825164.chain_1433	3	STRG.1368.2	1
scaffold_11	ends_in_intron	8078067	8078067	-	asmbl_6829,asmbl_6830,asmbl_6831,asmbl_6832	none	Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i2,Trinity_GG_7709_c0_g1_i6,Trinity_GG_7709_c0_g1_i8,blat.proc3825154.chain_2328,blat.proc3825154.chain_2329,blat.proc3825154.chain_2333,blat.proc3825154.chain_2334	8	STRG.13815.1,STRG.13815.2,STRG.13815.3,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i5,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2326,blat.proc3825154.chain_2330,blat.proc3825154.chain_2331,blat.proc3825154.chain_2332	13
scaffold_6	starts_in_intron	13224150	13224150	+	asmbl_47501	none	Trinity_GG_21752_c0_g2_i1,blat.proc3825168.chain_579	2	STRG.8084.1,STRG.8084.2,blat.proc3825168.chain_571,blat.proc3825168.chain_575,blat.proc3825168.chain_576	5
scaffold_9	retained_intron	9656350	9656875	+	asmbl_54221,asmbl_54222	none	blat.proc3825170.chain_160,blat.proc3825170.chain_163	2	STRG.11344.1,blat.proc3825170.chain_155,blat.proc3825170.chain_158	3
scaffold_18	alt_acceptor	7185331	7185332	+	asmbl_20712	none	STRG.21422.1,Trinity_GG_29133_c0_g1_i1,blat.proc3825174.chain_2426	3	STRG.21422.2,STRG.21422.3	2
scaffold_21	ends_in_intron	5449675	5449675	+	asmbl_28570	none	STRG.24079.2,blat.proc3825176.chain_1320	2	STRG.24079.1,STRG.24079.3,Trinity_GG_30672_c0_g1_i1,Trinity_GG_30672_c0_g2_i4,blat.proc3825176.chain_1317,blat.proc3825176.chain_1319	6
scaffold_9	spliced_intron	11836844	11837012	-	asmbl_55323	none	STRG.11501.1,blat.proc3825152.chain_3671	2	STRG.11501.2,STRG.11501.3,blat.proc3825152.chain_3669,blat.proc3825152.chain_3672	4
scaffold_23	alternate_exon	7684372	7685757	+	asmbl_31712	none	STRG.26090.1,Trinity_GG_31727_c0_g1_i4,Trinity_GG_31727_c2_g1_i1,blat.proc3825176.chain_3056,blat.proc3825176.chain_3059	5	STRG.26090.4	1
scaffold_8	skipped_exon	10238810	10239921	+	asmbl_53161	none	STRG.10282.2,blat.proc3825168.chain_2733	2	STRG.10282.1,blat.proc3825168.chain_2729,blat.proc3825168.chain_2731	3
scaffold_8	alt_acceptor	7392370	7392371	+	asmbl_52984	none	STRG.10064.1,blat.proc3825168.chain_2630	2	STRG.10064.2	1
scaffold_7	alt_acceptor	7440468	7440469	+	asmbl_49922	none	STRG.8996.2	1	STRG.8996.1,blat.proc3825168.chain_1462	2
scaffold_3	ends_in_intron	1759590	1759590	+	asmbl_39876	none	STRG.2993.2	1	STRG.2993.1,blat.proc3825164.chain_3236,blat.proc3825164.chain_3237,blat.proc3825164.chain_3238,blat.proc3825164.chain_3239,blat.proc3825164.chain_3240	6
scaffold_1	retained_intron	14521611	14522141	-	asmbl_928,asmbl_931,asmbl_932	none	STRG.1050.2,STRG.1050.3,Trinity_GG_552_c0_g1_i2,blat.proc3825148.chain_1053,blat.proc3825148.chain_1054	5	STRG.1050.1,STRG.1050.4,blat.proc3825148.chain_1051,blat.proc3825148.chain_1052	4
scaffold_25	retained_intron	6324770	6324860	-	asmbl_34361,asmbl_34362	none	blat.proc3825162.chain_939,blat.proc3825162.chain_941	2	STRG.27519.1,STRG.27519.2,blat.proc3825162.chain_938,blat.proc3825162.chain_940,blat.proc3825162.chain_942,blat.proc3825162.chain_943	6
scaffold_10	ends_in_intron	1425809	1425809	+	asmbl_2933	none	Trinity_GG_23995_c0_g1_i3,blat.proc3825170.chain_764	2	STRG.12016.1,STRG.12016.4,STRG.12016.5,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_760,blat.proc3825170.chain_763	6
scaffold_20	alt_donor	2844419	2844420	-	asmbl_25676,asmbl_25677	none	STRG.23019.1,STRG.23019.4,blat.proc3825160.chain_41,blat.proc3825160.chain_42	4	blat.proc3825160.chain_43	1
scaffold_5	skipped_exon	15416648	15419286	-	asmbl_44665	none	STRG.6728.2,blat.proc3825150.chain_2878	2	STRG.6728.1,STRG.6728.3,blat.proc3825150.chain_2880	3
scaffold_16	alt_donor	8502381	8502382	+	asmbl_16396	none	STRG.19478.2	1	STRG.19478.1	1
scaffold_6	retained_exon	3042228	3042317	-	asmbl_48219	none	STRG.7310.3,blat.proc3825150.chain_3456	2	STRG.7310.2,blat.proc3825150.chain_3455	2
scaffold_27	alt_donor	3093280	3093281	-	asmbl_36889,asmbl_36892,asmbl_36894	none	STRG.28796.2,STRG.28796.4,blat.proc3825162.chain_2066,blat.proc3825162.chain_2068	4	STRG.28796.5,blat.proc3825162.chain_2065	2
scaffold_24	alt_acceptor	9088042	9088043	+	asmbl_32499,asmbl_32500,asmbl_32502,asmbl_32504,asmbl_32505	none	STRG.26951.1,STRG.26951.3,STRG.26951.4,blat.proc3825178.chain_158,blat.proc3825178.chain_160,blat.proc3825178.chain_161,blat.proc3825178.chain_162	7	STRG.26951.2	1
scaffold_11	alt_donor	1983756	1983757	-	asmbl_6462	none	STRG.13360.2,Trinity_GG_7490_c0_g1_i5,blat.proc3825154.chain_1942,blat.proc3825154.chain_1943	4	STRG.13360.1,blat.proc3825154.chain_1941	2
scaffold_9	spliced_intron	5473472	5473745	+	asmbl_54046	none	STRG.11125.1,Trinity_GG_23479_c0_g1_i1,blat.proc3825168.chain_3597	3	blat.proc3825168.chain_3598	1
scaffold_5	starts_in_intron	15643204	15643204	-	asmbl_44716	none	STRG.6756.1	1	STRG.6756.2	1
scaffold_21	spliced_intron	7825384	7825604	-	asmbl_27860,asmbl_27862	none	STRG.24322.1,blat.proc3825160.chain_1418,blat.proc3825160.chain_1420	3	blat.proc3825160.chain_1419	1
scaffold_18	retained_intron	9628583	9628642	-	asmbl_20063,asmbl_20068,asmbl_20069	none	STRG.21576.1,STRG.21576.2,STRG.21576.4	3	blat.proc3825158.chain_2477,blat.proc3825158.chain_2480,blat.proc3825158.chain_2481	3
scaffold_4	retained_intron	4414707	4415344	+	asmbl_41256,asmbl_41257,asmbl_41261	none	blat.proc3825166.chain_847,blat.proc3825166.chain_854,blat.proc3825166.chain_855	3	STRG.4349.2,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_852	7
scaffold_9	retained_exon	4898459	4898797	+	asmbl_53968	none	STRG.11064.2	1	blat.proc3825168.chain_3562	1
scaffold_1	retained_intron	8733924	8734054	-	asmbl_483	none	blat.proc3825148.chain_569	1	STRG.576.1,blat.proc3825148.chain_568,blat.proc3825148.chain_570,blat.proc3825148.chain_571	4
scaffold_2	spliced_intron	9120966	9121051	+	asmbl_24664,asmbl_24666	none	STRG.2156.1,STRG.2156.2,Trinity_GG_18540_c0_g1_i2,blat.proc3825164.chain_2360	4	Trinity_GG_18540_c0_g1_i1,blat.proc3825164.chain_2359	2
scaffold_21	alternate_exon	416090	416134	-	asmbl_27319	none	STRG.23735.2,Trinity_GG_13224_c0_g1_i1,blat.proc3825160.chain_847	3	STRG.23735.1,Trinity_GG_13224_c0_g1_i2,blat.proc3825160.chain_846	3
scaffold_2	alt_acceptor	3517724	3517725	-	asmbl_22984	none	STRG.1786.2	1	STRG.1786.1	1
scaffold_22	alternate_exon	6528141	6529301	+	asmbl_30119	none	STRG.24998.1,blat.proc3825176.chain_2110	2	STRG.24998.2	1
scaffold_22	spliced_intron	10286469	10286546	-	asmbl_29598	none	STRG.25377.1	1	Trinity_GG_14171_c0_g1_i2,blat.proc3825160.chain_2481	2
scaffold_9	spliced_intron	6717195	6717297	-	asmbl_55068,asmbl_55069	none	STRG.11187.1,STRG.11187.3	2	STRG.11187.2	1
scaffold_25	alternate_exon	8707290	8710378	+	asmbl_33756,asmbl_33759	none	STRG.27702.3,blat.proc3825178.chain_762	2	blat.proc3825178.chain_769	1
scaffold_9	ends_in_intron	2400243	2400243	-	asmbl_54870	none	blat.proc3825152.chain_3098	1	STRG.10884.1,STRG.10884.2	2
scaffold_19	retained_intron	11481673	11481887	-	asmbl_22405	none	Trinity_GG_12512_c0_g1_i12,blat.proc3825158.chain_3242	2	STRG.22486.1,STRG.22486.2,STRG.22486.3,blat.proc3825158.chain_3243,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	7
scaffold_21	retained_intron	6616948	6617116	+	asmbl_28673	none	STRG.24188.2,Trinity_GG_30735_c1_g1_i1,blat.proc3825176.chain_1439	3	STRG.24188.1,blat.proc3825176.chain_1438	2
scaffold_10	skipped_exon	9003426	9004232	+	asmbl_3353	none	STRG.12646.4	1	STRG.12646.1,STRG.12646.2,blat.proc3825170.chain_1215,blat.proc3825170.chain_1216	4
scaffold_16	alt_acceptor	673453	673454	+	asmbl_16035,asmbl_16036	none	STRG.19045.1,STRG.19045.2,Trinity_GG_27750_c0_g1_i2,blat.proc3825172.chain_3697,blat.proc3825172.chain_3701	5	STRG.19045.3,STRG.19045.4,STRG.19045.5,Trinity_GG_27750_c0_g1_i3,Trinity_GG_27750_c0_g1_i4,Trinity_GG_27750_c0_g1_i5,blat.proc3825172.chain_3698,blat.proc3825172.chain_3699,blat.proc3825172.chain_3700	9
scaffold_5	alternate_exon	18759305	18759420	+	asmbl_46281	none	STRG.7009.1,Trinity_GG_21159_c0_g1_i1,blat.proc3825166.chain_3213	3	STRG.7009.2	1
scaffold_23	spliced_intron	4315991	4316097	+	asmbl_31498,asmbl_31499,asmbl_31502	none	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2780	4	blat.proc3825176.chain_2777,blat.proc3825176.chain_2778	2
scaffold_15	alt_acceptor	8789453	8789454	+	asmbl_15351	none	STRG.18422.1,blat.proc3825172.chain_3069	2	STRG.18422.2	1
scaffold_17	retained_intron	5711677	5712050	-	asmbl_17951	none	STRG.20274.2	1	STRG.20274.1,STRG.20274.3,blat.proc3825158.chain_1286,blat.proc3825158.chain_1287,blat.proc3825158.chain_1288	5
scaffold_3	retained_intron	4304074	4304185	+	asmbl_40008	none	STRG.3130.1	1	STRG.3130.2	1
scaffold_7	alternate_exon	4500524	4500580	-	asmbl_50866	none	blat.proc3825152.chain_1301	1	STRG.8821.1,STRG.8821.2,Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1302,blat.proc3825152.chain_1303,blat.proc3825152.chain_1304	6
scaffold_4	retained_intron	4121525	4121687	-	asmbl_42497,asmbl_42499	none	STRG.4329.3,Trinity_GG_2440_c0_g1_i3,blat.proc3825150.chain_595	3	STRG.4329.1,blat.proc3825150.chain_593	2
scaffold_24	alt_donor	10668143	10668144	+	asmbl_32584	none	STRG.27026.1,blat.proc3825178.chain_226	2	STRG.27026.2,blat.proc3825178.chain_225	2
scaffold_5	retained_exon	992825	992900	+	asmbl_45109	none	STRG.5651.1	1	STRG.5651.2,blat.proc3825166.chain_1830,blat.proc3825166.chain_1831	3
scaffold_24	alternate_exon	8697293	8697387	+	asmbl_32433	none	STRG.26878.1,blat.proc3825178.chain_72	2	STRG.26878.2	1
scaffold_27	alternate_exon	6181563	6195177	+	asmbl_36379	none	STRG.29014.3	1	Trinity_GG_33374_c0_g1_i2,blat.proc3825178.chain_2228	2
scaffold_2	starts_in_intron	14204019	14204019	-	asmbl_23578	none	blat.proc3825148.chain_2408	1	STRG.2414.3	1
scaffold_15	skipped_exon	12039034	12039793	+	asmbl_15520	none	STRG.18663.2	1	STRG.18663.1,blat.proc3825172.chain_3250	2
scaffold_27	alt_donor	6250325	6250326	+	asmbl_36392	none	STRG.29015.2	1	STRG.29015.1,blat.proc3825178.chain_2226	2
scaffold_24	spliced_intron	1064378	1064849	+	asmbl_32064	none	STRG.26380.3,Trinity_GG_31903_c0_g1_i3,blat.proc3825176.chain_3367	3	STRG.26380.1,Trinity_GG_31903_c0_g1_i1,Trinity_GG_31903_c0_g1_i2,blat.proc3825176.chain_3366,blat.proc3825176.chain_3368	5
scaffold_23	alternate_exon	332224	332756	-	asmbl_30584,asmbl_30586	none	STRG.25551.1,STRG.25551.2,blat.proc3825160.chain_2698	3	STRG.25551.3,blat.proc3825160.chain_2699	2
scaffold_7	ends_in_intron	13212664	13212664	+	asmbl_50321,asmbl_50322	none	STRG.9429.1,STRG.9429.2,blat.proc3825168.chain_1944,blat.proc3825168.chain_1947	4	STRG.9429.3,STRG.9429.4,blat.proc3825168.chain_1945,blat.proc3825168.chain_1946	4
scaffold_5	starts_in_intron	6658338	6658338	+	asmbl_45442	none	blat.proc3825166.chain_2245	1	STRG.6072.1,Trinity_GG_20605_c0_g1_i1,blat.proc3825166.chain_2246	3
scaffold_15	spliced_intron	15416820	15416897	-	asmbl_14776,asmbl_14778	none	blat.proc3825158.chain_52,blat.proc3825158.chain_54	2	blat.proc3825158.chain_53	1
scaffold_6	retained_intron	8172324	8172399	-	asmbl_48535,asmbl_48536,asmbl_48537	none	Trinity_GG_4351_c0_g1_i4,blat.proc3825152.chain_88,blat.proc3825152.chain_90	3	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_87,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93	7
scaffold_28	starts_in_intron	9419393	9419393	-	asmbl_38513	none	blat.proc3825162.chain_3154	1	STRG.29973.1,blat.proc3825162.chain_3153	2
scaffold_20	alt_acceptor	1754227	1754228	+	asmbl_26452	none	STRG.22921.3	1	STRG.22921.2,Trinity_GG_29951_c0_g1_i3,blat.proc3825176.chain_125	3
scaffold_20	starts_in_intron	1624178	1624178	-	asmbl_25593	none	blat.proc3825160.chain_10	1	STRG.22899.1,STRG.22899.2	2
scaffold_14	retained_intron	7215130	7215744	+	asmbl_12136,asmbl_12137	none	blat.proc3825172.chain_1869,blat.proc3825172.chain_1871	2	STRG.17156.1,Trinity_GG_26721_c0_g1_i3,blat.proc3825172.chain_1868,blat.proc3825172.chain_1870	4
scaffold_21	spliced_intron	255543	255961	-	asmbl_27282,asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27286,asmbl_27288,asmbl_27289,asmbl_27294,asmbl_27295,asmbl_27296,asmbl_27297	none	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.4,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806,blat.proc3825160.chain_809,blat.proc3825160.chain_811,blat.proc3825160.chain_812	13	blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	3
scaffold_8	alternate_exon	9868559	9868994	+	asmbl_53125	none	blat.proc3825168.chain_2815	1	STRG.10233.6,blat.proc3825168.chain_2816,blat.proc3825168.chain_2819,blat.proc3825168.chain_2821	4
scaffold_5	starts_in_intron	3854317	3854317	+	asmbl_45248	none	blat.proc3825166.chain_2089	1	STRG.5851.1,blat.proc3825166.chain_2088	2
scaffold_4	starts_in_intron	14106852	14106852	+	asmbl_41842,asmbl_41847	none	STRG.5030.3,STRG.5030.4,blat.proc3825166.chain_1415	3	STRG.5030.1,STRG.5030.2	2
scaffold_9	alt_donor	6281844	6281845	+	asmbl_54083	none	STRG.11170.2,Trinity_GG_23509_c0_g1_i1,blat.proc3825168.chain_3664	3	STRG.11170.1,Trinity_GG_23509_c0_g1_i2,blat.proc3825168.chain_3663	3
scaffold_10	alt_acceptor	14826322	14826323	+	asmbl_3667	none	STRG.13026.1	1	STRG.13026.2,STRG.13026.3,blat.proc3825170.chain_1575	3
scaffold_1	alternate_exon	2402933	2403605	-	asmbl_120	none	STRG.155.2,Trinity_GG_85_c0_g1_i1,blat.proc3825148.chain_130	3	STRG.155.1,blat.proc3825148.chain_129	2
scaffold_21	alternate_exon	830866	833404	+	asmbl_28312	none	blat.proc3825176.chain_909	1	STRG.23777.3	1
scaffold_8	retained_exon	2438698	2438809	-	asmbl_51710	none	STRG.9794.2,blat.proc3825152.chain_2056	2	STRG.9794.3,blat.proc3825152.chain_2057	2
scaffold_8	alt_donor	15152781	15152782	+	asmbl_53385	none	STRG.10545.1,blat.proc3825168.chain_3082	2	STRG.10545.2,blat.proc3825168.chain_3081	2
scaffold_21	spliced_intron	706527	706986	-	asmbl_27350	none	STRG.23759.1,blat.proc3825160.chain_796	2	STRG.23759.2,blat.proc3825160.chain_794	2
scaffold_7	alt_acceptor	41513	41514	+	asmbl_49533,asmbl_49535	none	STRG.8587.1,STRG.8587.2	2	STRG.8587.3	1
scaffold_15	retained_intron	15355053	15355143	+	asmbl_15756,asmbl_15757,asmbl_15759	none	STRG.18922.1,Trinity_GG_27686_c0_g1_i4,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3564,blat.proc3825172.chain_3565	6	STRG.18922.2,blat.proc3825172.chain_3562,blat.proc3825172.chain_3566	3
scaffold_5	retained_intron	11016319	11016635	-	asmbl_44396	none	STRG.6388.2,blat.proc3825150.chain_2593	2	STRG.6388.3	1
scaffold_12	alt_acceptor	4983845	4983846	+	asmbl_7628	none	blat.proc3825170.chain_3135	1	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3136,blat.proc3825170.chain_3139,blat.proc3825170.chain_3140,blat.proc3825170.chain_3141	6
scaffold_25	starts_in_intron	4537567	4537567	-	asmbl_34206,asmbl_34207,asmbl_34208	none	STRG.27391.2,Trinity_GG_15331_c0_g1_i2,Trinity_GG_15331_c0_g1_i4,blat.proc3825162.chain_714,blat.proc3825162.chain_715	5	STRG.27391.1,Trinity_GG_15331_c0_g1_i3,blat.proc3825162.chain_713	3
scaffold_27	spliced_intron	381928	382157	-	asmbl_36680	none	STRG.28567.4,blat.proc3825162.chain_1736	2	STRG.28567.2,blat.proc3825162.chain_1732	2
scaffold_15	ends_in_intron	3152594	3152594	-	asmbl_14082	none	blat.proc3825156.chain_2852	1	STRG.18101.1,Trinity_GG_10139_c0_g1_i3,blat.proc3825156.chain_2850	3
scaffold_2	alt_acceptor	16285411	16285412	+	asmbl_25109	none	STRG.2562.2,blat.proc3825164.chain_2841	2	STRG.2562.1,blat.proc3825164.chain_2842,blat.proc3825164.chain_2843	3
scaffold_16	skipped_exon	2336883	2337733	-	asmbl_16963	none	STRG.19129.1	1	STRG.19129.2,Trinity_GG_10745_c0_g1_i1,blat.proc3825158.chain_274	3
scaffold_12	ends_in_intron	12455156	12455156	-	asmbl_8885	none	Trinity_GG_8477_c0_g1_i3,blat.proc3825154.chain_3676	2	STRG.15152.1,blat.proc3825154.chain_3674,blat.proc3825154.chain_3675	3
scaffold_19	alt_donor	7426107	7426108	+	asmbl_21453	none	STRG.22223.1,blat.proc3825174.chain_3216	2	STRG.22223.2	1
scaffold_11	retained_intron	4745326	4745491	-	asmbl_6625	none	blat.proc3825154.chain_2164	1	STRG.13567.1,STRG.13567.2,blat.proc3825154.chain_2162,blat.proc3825154.chain_2163,blat.proc3825154.chain_2165,blat.proc3825154.chain_2166,blat.proc3825154.chain_2167	7
scaffold_2	retained_intron	14623203	14623311	+	asmbl_24964	none	blat.proc3825164.chain_2725	1	STRG.2458.1,blat.proc3825164.chain_2726	2
scaffold_340	retained_intron	809	1149	+	asmbl_41013,asmbl_41015	none	STRG.30295.2,Trinity_GG_34083_c0_g1_i3,blat.proc3825178.chain_3392	3	STRG.30295.3,STRG.30295.4,STRG.30295.5	3
scaffold_7	starts_in_intron	4178820	4178820	+	asmbl_49727	none	blat.proc3825168.chain_1253	1	STRG.8817.1,STRG.8817.2,STRG.8817.3,blat.proc3825168.chain_1254,blat.proc3825168.chain_1255	5
scaffold_1	alternate_exon	15887890	15888046	-	asmbl_965	none	STRG.1118.2	1	STRG.1118.1,STRG.1118.3,blat.proc3825148.chain_1135,blat.proc3825148.chain_1136	4
scaffold_7	alt_acceptor	13806985	13806986	+	asmbl_50375,asmbl_50377	none	STRG.9488.1,STRG.9488.2	2	STRG.9488.4	1
scaffold_13	ends_in_intron	6296064	6296064	+	asmbl_10921	none	blat.proc3825172.chain_659	1	STRG.15925.1,STRG.15925.2,STRG.15925.3,blat.proc3825172.chain_658,blat.proc3825172.chain_660,blat.proc3825172.chain_661,blat.proc3825172.chain_662	7
scaffold_3	spliced_intron	10849045	10849122	+	asmbl_40307	none	STRG.3520.1,Trinity_GG_19297_c0_g1_i2,blat.proc3825166.chain_32	3	STRG.3520.2,Trinity_GG_19297_c0_g1_i1,blat.proc3825166.chain_33	3
scaffold_5	retained_intron	6847775	6848001	+	asmbl_45452	none	blat.proc3825166.chain_2225	1	STRG.6094.1,blat.proc3825166.chain_2227	2
scaffold_20	ends_in_intron	9447575	9447575	-	asmbl_26036	none	blat.proc3825160.chain_572	1	STRG.23485.2,blat.proc3825160.chain_571	2
scaffold_15	skipped_exon	2565681	2566519	-	asmbl_14022	none	STRG.18046.1,blat.proc3825156.chain_2867	2	STRG.18046.2,STRG.18046.3,blat.proc3825156.chain_2864,blat.proc3825156.chain_2865,blat.proc3825156.chain_2866	5
scaffold_8	retained_intron	11810649	11810780	+	asmbl_53269	none	blat.proc3825168.chain_2986	1	STRG.10386.1,blat.proc3825168.chain_2984,blat.proc3825168.chain_2987	3
scaffold_39	ends_in_intron	32575	32575	-	asmbl_41072	none	STRG.30041.2	1	STRG.30041.1	1
scaffold_20	ends_in_intron	10514431	10514431	-	asmbl_26108	none	Trinity_GG_13142_c0_g1_i1,blat.proc3825160.chain_649	2	STRG.23593.1,STRG.23593.2,blat.proc3825160.chain_651,blat.proc3825160.chain_652	4
scaffold_15	retained_exon	12009315	12009379	-	asmbl_14555	none	STRG.18664.3,blat.proc3825156.chain_3539,blat.proc3825156.chain_3541	3	STRG.18664.1,blat.proc3825156.chain_3538,blat.proc3825156.chain_3542	3
scaffold_15	ends_in_intron	1506722	1506722	+	asmbl_15015	none	blat.proc3825172.chain_2674	1	STRG.17964.1	1
scaffold_3	skipped_exon	10274721	10275590	+	asmbl_40248,asmbl_40251	none	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3	STRG.3467.1,STRG.3467.3,blat.proc3825164.chain_3727,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734	5
scaffold_16	alt_donor	12022874	12022875	-	asmbl_17384	none	STRG.19729.3	1	STRG.19729.1,STRG.19729.2,blat.proc3825158.chain_787,blat.proc3825158.chain_788	4
scaffold_14	spliced_intron	12823398	12823517	-	asmbl_13614,asmbl_13615,asmbl_13616,asmbl_13617,asmbl_13618,asmbl_13619	none	STRG.17598.1,STRG.17598.2,STRG.17598.3,STRG.17598.4,STRG.17598.5,blat.proc3825156.chain_2458,blat.proc3825156.chain_2460,blat.proc3825156.chain_2461,blat.proc3825156.chain_2464	9	Trinity_GG_9905_c0_g1_i8,blat.proc3825156.chain_2463	2
scaffold_5	starts_in_intron	15898841	15898841	+	asmbl_46032	none	Trinity_GG_20960_c0_g1_i2	1	STRG.6778.1,STRG.6778.2,STRG.6778.3,STRG.6778.4,blat.proc3825166.chain_2866,blat.proc3825166.chain_2867	6
scaffold_5	retained_intron	16091466	16091548	+	asmbl_46047	none	blat.proc3825166.chain_2937	1	STRG.6797.1,blat.proc3825166.chain_2939	2
scaffold_11	alternate_exon	8898170	8898983	-	asmbl_6883	none	STRG.13911.2	1	blat.proc3825154.chain_2427	1
scaffold_8	starts_in_intron	6119754	6119754	+	asmbl_52945	none	STRG.10015.3	1	STRG.10015.1,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	3
scaffold_27	alt_donor	2554056	2554057	-	asmbl_36828	none	STRG.28734.1,blat.proc3825162.chain_1985	2	STRG.28734.2,blat.proc3825162.chain_1984	2
scaffold_24	spliced_intron	1945924	1946155	-	asmbl_32756	none	STRG.26421.4	1	STRG.26421.3	1
scaffold_1	starts_in_intron	14350273	14350273	-	asmbl_895	none	blat.proc3825148.chain_1027	1	STRG.1033.1,STRG.1033.2,blat.proc3825148.chain_1023,blat.proc3825148.chain_1024,blat.proc3825148.chain_1025,blat.proc3825148.chain_1026	6
scaffold_26	retained_intron	9315311	9315414	+	asmbl_35217	none	blat.proc3825178.chain_1616	1	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1612,blat.proc3825178.chain_1618	6
scaffold_2	alt_acceptor	9262350	9262351	-	asmbl_23373	none	STRG.2169.3	1	STRG.2169.1,STRG.2169.2,blat.proc3825148.chain_2191,blat.proc3825148.chain_2192	4
scaffold_22	skipped_exon	4577207	4577915	+	asmbl_30030	none	STRG.24887.1	1	STRG.24887.2,STRG.24887.3,blat.proc3825176.chain_2004,blat.proc3825176.chain_2005	4
scaffold_11	alt_acceptor	4730690	4730691	+	asmbl_5506	none	blat.proc3825170.chain_2097	1	STRG.13559.1,blat.proc3825170.chain_2096	2
scaffold_16	starts_in_intron	303700	303700	-	asmbl_16848	none	blat.proc3825158.chain_136	1	STRG.19021.1,STRG.19021.2	2
scaffold_2	retained_exon	888816	888917	+	asmbl_24130	none	blat.proc3825164.chain_1714	1	blat.proc3825164.chain_1712	1
scaffold_10	alternate_exon	211500	211625	-	asmbl_3921,asmbl_3923	none	STRG.11913.2,blat.proc3825154.chain_430,blat.proc3825154.chain_431	3	STRG.11913.1,Trinity_GG_6621_c0_g1_i1,blat.proc3825154.chain_433	3
scaffold_20	retained_intron	11672168	11672271	-	asmbl_26172	none	STRG.23670.1,blat.proc3825160.chain_748	2	blat.proc3825160.chain_749	1
scaffold_11	starts_in_intron	11340285	11340285	+	asmbl_5971,asmbl_5972	none	STRG.14083.2,Trinity_GG_25087_c0_g1_i2,blat.proc3825170.chain_2648	3	STRG.14083.1,blat.proc3825170.chain_2647	2
scaffold_3	starts_in_intron	16937006	16937006	-	asmbl_39524	none	blat.proc3825150.chain_61	1	STRG.3938.1,blat.proc3825150.chain_60	2
scaffold_11	retained_intron	9829790	9830568	+	asmbl_5906,asmbl_5907	none	STRG.14008.1,STRG.14008.3,Trinity_GG_25038_c0_g1_i6,blat.proc3825170.chain_2560	4	STRG.14008.4,blat.proc3825170.chain_2565	2
scaffold_23	alt_acceptor	5578416	5578417	+	asmbl_31577,asmbl_31584	none	STRG.25933.2,blat.proc3825176.chain_2837,blat.proc3825176.chain_2840	3	STRG.25933.4,blat.proc3825176.chain_2834,blat.proc3825176.chain_2835	3
scaffold_9	alt_acceptor	3413981	3413982	-	asmbl_54901,asmbl_54904	none	STRG.10955.3,blat.proc3825152.chain_3203	2	STRG.10955.1,blat.proc3825152.chain_3205	2
scaffold_28	alternate_exon	2198363	2198412	+	asmbl_37342	none	STRG.29390.2,Trinity_GG_33584_c0_g1_i2,blat.proc3825178.chain_2543	3	STRG.29390.3	1
scaffold_8	retained_intron	2655012	2655188	-	asmbl_51712	none	STRG.9802.2,blat.proc3825152.chain_2054	2	STRG.9802.1,blat.proc3825152.chain_2055	2
scaffold_22	alternate_exon	6217104	6223386	-	asmbl_29324,asmbl_29326	none	STRG.24984.1,STRG.24984.3	2	STRG.24984.2	1
scaffold_18	alt_donor	7641331	7641332	-	asmbl_19960,asmbl_19961,asmbl_19962	none	STRG.21463.1,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2392,blat.proc3825158.chain_2396,blat.proc3825158.chain_2397	5	STRG.21463.2,STRG.21463.3,STRG.21463.4,blat.proc3825158.chain_2393,blat.proc3825158.chain_2394	5
scaffold_1	spliced_intron	17724961	17725166	+	asmbl_2528,asmbl_2529,asmbl_2531	none	STRG.1244.1,STRG.1244.2,Trinity_GG_18025_c0_g1_i2,Trinity_GG_18025_c0_g1_i3,blat.proc3825164.chain_1364,blat.proc3825164.chain_1366	6	Trinity_GG_18025_c0_g1_i1,blat.proc3825164.chain_1365	2
scaffold_19	spliced_intron	12491982	12492152	+	asmbl_21813	none	STRG.22590.5	1	STRG.22590.2,blat.proc3825174.chain_3623,blat.proc3825174.chain_3628	3
scaffold_22	alt_donor	693343	693344	+	asmbl_29882,asmbl_29883	none	STRG.24719.2,STRG.24719.3	2	STRG.24719.1,Trinity_GG_30979_c0_g1_i1,blat.proc3825176.chain_1847	3
scaffold_25	spliced_intron	185266	185787	-	asmbl_33955	none	STRG.27051.1,Trinity_GG_15147_c0_g1_i2,blat.proc3825162.chain_412	3	Trinity_GG_15147_c0_g1_i1,blat.proc3825162.chain_411	2
scaffold_19	alt_acceptor	12136982	12136983	+	asmbl_21757	none	STRG.22544.3	1	STRG.22544.1,STRG.22544.2,Trinity_GG_29790_c1_g1_i1,Trinity_GG_29790_c1_g1_i2,Trinity_GG_29790_c1_g1_i5,blat.proc3825174.chain_3580,blat.proc3825174.chain_3581,blat.proc3825174.chain_3582	8
scaffold_21	spliced_intron	10309452	10309508	-	asmbl_28034	none	STRG.24499.3	1	STRG.24499.1,Trinity_GG_13695_c0_g1_i1	2
scaffold_1	starts_in_intron	19942733	19942733	-	asmbl_1160	none	blat.proc3825148.chain_1371	1	STRG.1366.1,blat.proc3825148.chain_1372	2
scaffold_5	retained_exon	17194625	17194725	+	asmbl_46142	none	STRG.6891.2	1	STRG.6891.1	1
scaffold_16	alt_acceptor	125613	125614	+	asmbl_16001	none	STRG.19007.4	1	STRG.19007.1,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3683	3
scaffold_21	alt_acceptor	6489370	6489371	+	asmbl_28650	none	STRG.24171.2,blat.proc3825176.chain_1384	2	STRG.24171.1,STRG.24171.3,blat.proc3825176.chain_1385	3
scaffold_1	alternate_exon	14196407	14196629	-	asmbl_866,asmbl_871,asmbl_872	none	STRG.1005.1,blat.proc3825148.chain_968,blat.proc3825148.chain_969,blat.proc3825148.chain_971	4	blat.proc3825148.chain_970	1
scaffold_27	spliced_intron	2903102	2903179	-	asmbl_36869	none	STRG.28776.2	1	STRG.28776.3,blat.proc3825162.chain_1965	2
scaffold_25	ends_in_intron	1899701	1899701	-	asmbl_34052	none	Trinity_GG_15255_c0_g1_i3,blat.proc3825162.chain_602	2	STRG.27200.2,blat.proc3825162.chain_601	2
scaffold_19	alt_acceptor	8213525	8213526	-	asmbl_22280	none	STRG.22270.3,blat.proc3825158.chain_3081	2	STRG.22270.1,STRG.22270.2,blat.proc3825158.chain_3080,blat.proc3825158.chain_3082	4
scaffold_17	starts_in_intron	10073451	10073451	+	asmbl_19173	none	blat.proc3825174.chain_1513	1	STRG.20631.1,STRG.20631.2,Trinity_GG_28612_c0_g1_i2,Trinity_GG_28612_c0_g1_i4,blat.proc3825174.chain_1514,blat.proc3825174.chain_1515	6
scaffold_26	retained_exon	1995448	1995532	+	asmbl_34729	none	STRG.27942.1	1	STRG.27942.2	1
scaffold_2	ends_in_intron	7928086	7928086	-	asmbl_23294	none	STRG.2089.2,Trinity_GG_1146_c0_g1_i4,blat.proc3825148.chain_2080	3	STRG.2089.1,blat.proc3825148.chain_2075,blat.proc3825148.chain_2077,blat.proc3825148.chain_2078	4
scaffold_14	spliced_intron	13223723	13223984	+	asmbl_12462,asmbl_12464,asmbl_12469	none	STRG.17622.1,STRG.17622.2,STRG.17622.4,blat.proc3825172.chain_2329,blat.proc3825172.chain_2330	5	STRG.17622.3,blat.proc3825172.chain_2332,blat.proc3825172.chain_2335	3
scaffold_16	skipped_exon	8584387	8585369	+	asmbl_16417,asmbl_16421,asmbl_16423,asmbl_16424	none	STRG.19490.5,STRG.19490.7,blat.proc3825174.chain_372,blat.proc3825174.chain_374	4	STRG.19490.1,STRG.19490.2,STRG.19490.3,STRG.19490.4,STRG.19490.6,Trinity_GG_27967_c0_g1_i7,blat.proc3825174.chain_373,blat.proc3825174.chain_375,blat.proc3825174.chain_376,blat.proc3825174.chain_377	10
scaffold_23	spliced_intron	4167441	4167665	+	asmbl_31489,asmbl_31490	none	STRG.25833.1,STRG.25833.2,blat.proc3825176.chain_2766	3	Trinity_GG_31563_c0_g1_i4,blat.proc3825176.chain_2767,blat.proc3825176.chain_2769	3
scaffold_2	spliced_intron	18610276	18610515	-	asmbl_23801	none	STRG.2736.3,Trinity_GG_1475_c0_g1_i1,blat.proc3825148.chain_2626	3	STRG.2736.1,Trinity_GG_1475_c0_g1_i2,blat.proc3825148.chain_2625	3
scaffold_23	retained_exon	3436954	3437001	+	asmbl_31435	none	STRG.25762.1,blat.proc3825176.chain_2674	2	blat.proc3825176.chain_2673	1
scaffold_4	retained_intron	14679949	14680368	-	asmbl_43076	none	blat.proc3825150.chain_1225,blat.proc3825150.chain_1228	2	STRG.5102.1	1
scaffold_11	spliced_intron	17336336	17336476	+	asmbl_6211	none	STRG.14393.1,Trinity_GG_25249_c0_g1_i2,blat.proc3825170.chain_2937,blat.proc3825170.chain_2939	4	STRG.14393.2,blat.proc3825170.chain_2938	2
scaffold_1	retained_intron	1994334	1994743	+	asmbl_1528	none	blat.proc3825164.chain_262	1	STRG.128.1,Trinity_GG_17420_c0_g1_i2,blat.proc3825164.chain_261,blat.proc3825164.chain_263	4
scaffold_28	alt_acceptor	3167285	3167286	+	asmbl_37452	none	STRG.29529.3	1	STRG.29529.2	1
scaffold_18	retained_intron	7867463	7867646	+	asmbl_20798,asmbl_20806,asmbl_20807	none	STRG.21488.4,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i11,blat.proc3825174.chain_2453	5	STRG.21488.1,STRG.21488.2,STRG.21488.3,STRG.21488.5,Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i16,Trinity_GG_29146_c0_g1_i18,Trinity_GG_29146_c0_g1_i3,blat.proc3825174.chain_2450,blat.proc3825174.chain_2451,blat.proc3825174.chain_2452,blat.proc3825174.chain_2455,blat.proc3825174.chain_2456,blat.proc3825174.chain_2458,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	16
scaffold_8	retained_exon	9373718	9373903	-	asmbl_52025,asmbl_52026,asmbl_52028,asmbl_52032	none	STRG.10202.3,STRG.10202.4,STRG.10202.5,blat.proc3825152.chain_2461,blat.proc3825152.chain_2464	5	STRG.10202.6,blat.proc3825152.chain_2463	2
scaffold_17	alt_acceptor	8808712	8808713	-	asmbl_18118	none	STRG.20490.2,blat.proc3825158.chain_1441	2	STRG.20490.1,blat.proc3825158.chain_1440	2
scaffold_15	starts_in_intron	14041716	14041716	+	asmbl_15668	none	Trinity_GG_27646_c0_g1_i2,blat.proc3825172.chain_3476	2	STRG.18840.1,blat.proc3825172.chain_3474,blat.proc3825172.chain_3475	3
scaffold_3	retained_exon	18154875	18154934	-	asmbl_39596	none	STRG.4025.2,blat.proc3825150.chain_205	2	STRG.4025.1,blat.proc3825150.chain_206	2
scaffold_11	alt_donor	13092994	13092995	+	asmbl_6032	none	Trinity_GG_25144_c0_g1_i1,Trinity_GG_25144_c1_g1_i1,blat.proc3825170.chain_2745,blat.proc3825170.chain_2752	4	STRG.14188.2,blat.proc3825170.chain_2746,blat.proc3825170.chain_2747	3
scaffold_5	alt_acceptor	1064211	1064212	-	asmbl_43812	none	STRG.5657.2,Trinity_GG_3203_c0_g1_i2,blat.proc3825150.chain_1900	3	STRG.5657.1,Trinity_GG_3203_c0_g1_i4,blat.proc3825150.chain_1899	3
scaffold_15	spliced_intron	15188738	15189128	+	asmbl_15725,asmbl_15735,asmbl_15740	none	STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3536	5	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	6
scaffold_6	alt_donor	2758883	2758884	+	asmbl_46772	none	STRG.7272.5	1	STRG.7272.1	1
scaffold_17	retained_intron	1602805	1602948	+	asmbl_18618	none	blat.proc3825174.chain_883	1	STRG.19999.1,blat.proc3825174.chain_884	2
scaffold_9	alt_donor	9657448	9657449	+	asmbl_54221	none	blat.proc3825170.chain_160	1	STRG.11344.2	1
scaffold_2	spliced_intron	18771819	18771850	+	asmbl_25249	none	STRG.2756.2	1	STRG.2756.1	1
scaffold_2	starts_in_intron	20319390	20319390	+	asmbl_25326	none	blat.proc3825164.chain_3106	1	STRG.2877.4,STRG.2877.5,blat.proc3825164.chain_3104,blat.proc3825164.chain_3105	4
scaffold_7	starts_in_intron	10686716	10686716	+	asmbl_50139	none	blat.proc3825168.chain_1727	1	STRG.9242.1,blat.proc3825168.chain_1726	2
scaffold_14	retained_exon	15584767	15584808	+	asmbl_12629,asmbl_12630,asmbl_12632	none	STRG.17811.1,STRG.17811.2,STRG.17811.6	3	STRG.17811.3,STRG.17811.5,STRG.17811.7,blat.proc3825172.chain_2554,blat.proc3825172.chain_2556	5
scaffold_1	retained_intron	12335370	12335520	-	asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_705,asmbl_710	none	Trinity_GG_444_c0_g1_i30,blat.proc3825148.chain_826,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_832,blat.proc3825148.chain_834,blat.proc3825148.chain_836	7	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_831,blat.proc3825148.chain_833,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	12
scaffold_9	starts_in_intron	5473012	5473012	+	asmbl_54047	none	blat.proc3825168.chain_3598	1	STRG.11125.1,Trinity_GG_23479_c0_g1_i1,blat.proc3825168.chain_3597	3
scaffold_3	spliced_intron	17457148	17457253	+	asmbl_40679,asmbl_40681,asmbl_40682,asmbl_40683	none	STRG.3978.1,STRG.3978.2,STRG.3978.3,STRG.3978.5,Trinity_GG_19520_c0_g1_i2,blat.proc3825166.chain_436	6	STRG.3978.4,Trinity_GG_19520_c0_g1_i1,blat.proc3825166.chain_435	3
scaffold_3	alternate_exon	16147849	16148143	-	asmbl_39486	none	STRG.3902.3,blat.proc3825150.chain_81	2	STRG.3902.2,blat.proc3825150.chain_82	2
scaffold_7	starts_in_intron	13532450	13532450	+	asmbl_50357	none	Trinity_GG_22569_c0_g1_i2,blat.proc3825168.chain_1986	2	STRG.9457.1,blat.proc3825168.chain_1985	2
scaffold_1	alt_donor	5955192	5955193	+	asmbl_1800,asmbl_1802	none	STRG.396.2,STRG.396.3	2	STRG.396.1,blat.proc3825164.chain_552	2
scaffold_13	alternate_exon	2659112	2659140	-	asmbl_9476	none	blat.proc3825156.chain_384	1	STRG.15572.1,blat.proc3825156.chain_385,blat.proc3825156.chain_386	3
scaffold_13	spliced_intron	14174926	14175211	+	asmbl_11432,asmbl_11434	none	STRG.16460.2,STRG.16460.5,Trinity_GG_26388_c0_g1_i7,blat.proc3825172.chain_1269	4	STRG.16460.4,Trinity_GG_26388_c0_g1_i1,Trinity_GG_26388_c0_g1_i6,Trinity_GG_26388_c0_g1_i8,blat.proc3825172.chain_1265,blat.proc3825172.chain_1267,blat.proc3825172.chain_1268	7
scaffold_4	spliced_intron	14679968	14680368	-	asmbl_43075	none	STRG.5102.2,blat.proc3825150.chain_1226	2	blat.proc3825150.chain_1225,blat.proc3825150.chain_1228	2
scaffold_17	alt_donor	8318266	8318267	+	asmbl_18964,asmbl_18965,asmbl_18967,asmbl_18968,asmbl_18969	none	STRG.20456.1,STRG.20456.3,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1201,blat.proc3825174.chain_1202	7	STRG.20456.2,blat.proc3825174.chain_1200,blat.proc3825174.chain_1206	3
scaffold_11	alt_acceptor	11937192	11937193	-	asmbl_7042,asmbl_7044	none	STRG.14177.2,STRG.14177.4	2	STRG.14177.3	1
scaffold_7	ends_in_intron	4498238	4498238	-	asmbl_50866,asmbl_50867	none	blat.proc3825152.chain_1301,blat.proc3825152.chain_1302	2	STRG.8821.1,STRG.8821.2,Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1303,blat.proc3825152.chain_1304	5
scaffold_28	alternate_exon	1159759	1159862	-	asmbl_37978	none	STRG.29323.1	1	STRG.29323.2,blat.proc3825162.chain_2511	2
scaffold_7	alt_acceptor	17339140	17339141	-	asmbl_51424	none	STRG.9613.4	1	STRG.9613.1	1
scaffold_22	spliced_intron	744120	744573	-	asmbl_29126,asmbl_29127	none	STRG.24730.1,blat.proc3825160.chain_1923,blat.proc3825160.chain_1926	3	blat.proc3825160.chain_1924	1
scaffold_4	spliced_intron	4416472	4417089	+	asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41254,asmbl_41255,asmbl_41258,asmbl_41259	none	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,blat.proc3825166.chain_842,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_851,blat.proc3825166.chain_852	11	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_847,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	5
scaffold_16	alt_acceptor	14677220	14677221	+	asmbl_16706	none	STRG.19870.1	1	STRG.19870.2,blat.proc3825174.chain_753,blat.proc3825174.chain_754	3
scaffold_15	ends_in_intron	12597314	12597314	-	asmbl_14587	none	Trinity_GG_10507_c0_g1_i6,blat.proc3825156.chain_3576	2	STRG.18712.1,blat.proc3825156.chain_3573,blat.proc3825156.chain_3574,blat.proc3825156.chain_3575,blat.proc3825156.chain_3577	5
scaffold_14	starts_in_intron	9276558	9276558	-	asmbl_13360,asmbl_13361	none	STRG.17338.3,STRG.17338.5,blat.proc3825156.chain_2208	3	STRG.17338.1,STRG.17338.2,STRG.17338.4,blat.proc3825156.chain_2200,blat.proc3825156.chain_2202,blat.proc3825156.chain_2203,blat.proc3825156.chain_2204	7
scaffold_10	retained_exon	9361726	9363040	+	asmbl_3372,asmbl_3373	none	STRG.12676.1,blat.proc3825170.chain_1252	2	blat.proc3825170.chain_1250	1
scaffold_5	alternate_exon	4755266	4755296	+	asmbl_45296	none	Trinity_GG_20552_c0_g1_i1	1	STRG.5935.1,blat.proc3825166.chain_2142,blat.proc3825166.chain_2143	3
scaffold_5	retained_intron	11630546	11631086	-	asmbl_44415,asmbl_44416,asmbl_44419	none	blat.proc3825150.chain_2638,blat.proc3825150.chain_2639,blat.proc3825150.chain_2640	3	blat.proc3825150.chain_2641,blat.proc3825150.chain_2642	2
scaffold_27	alternate_exon	2820671	2821233	+	asmbl_36122,asmbl_36123	none	STRG.28763.3,blat.proc3825178.chain_1925	2	STRG.28763.1,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1924	5
scaffold_25	starts_in_intron	803059	803059	-	asmbl_34000,asmbl_34002,asmbl_34004	none	STRG.27136.1,STRG.27136.4,STRG.27136.5	3	STRG.27136.3	1
scaffold_21	spliced_intron	3112080	3112167	-	asmbl_27506,asmbl_27508,asmbl_27509	none	STRG.23940.1,blat.proc3825160.chain_1062,blat.proc3825160.chain_1063,blat.proc3825160.chain_1064	4	blat.proc3825160.chain_1061	1
scaffold_2	alt_donor	2907051	2907052	-	asmbl_22949	none	blat.proc3825148.chain_1615	1	STRG.1731.1,STRG.1731.2,blat.proc3825148.chain_1611,blat.proc3825148.chain_1612,blat.proc3825148.chain_1613,blat.proc3825148.chain_1614	6
scaffold_21	alternate_exon	5516228	5519377	-	asmbl_27663	none	STRG.24083.1,Trinity_GG_13443_c0_g1_i1,blat.proc3825160.chain_1260	3	blat.proc3825160.chain_1261	1
scaffold_17	spliced_intron	14633346	14633405	+	asmbl_19416	none	STRG.20943.3	1	STRG.20943.2	1
scaffold_17	skipped_exon	8605578	8605835	-	asmbl_18104	none	STRG.20472.2,Trinity_GG_11505_c1_g1_i1,blat.proc3825158.chain_1494	3	STRG.20472.1,Trinity_GG_11505_c1_g2_i1,blat.proc3825158.chain_1495	3
scaffold_12	starts_in_intron	4724237	4724237	-	asmbl_8435	none	STRG.14649.4	1	STRG.14649.2	1
scaffold_22	alt_donor	7439755	7439756	+	asmbl_30183	none	STRG.25085.1,blat.proc3825176.chain_2204	2	STRG.25085.2	1
scaffold_3	spliced_intron	14774473	14774932	-	asmbl_39423	none	STRG.3822.1,blat.proc3825150.chain_35	2	STRG.3822.2,blat.proc3825150.chain_33	2
scaffold_2	spliced_intron	2076731	2076946	+	asmbl_24236	none	blat.proc3825164.chain_1806	1	STRG.1662.1,STRG.1662.2,Trinity_GG_18249_c0_g1_i1,Trinity_GG_18249_c0_g1_i2,Trinity_GG_18249_c0_g1_i3,blat.proc3825164.chain_1803,blat.proc3825164.chain_1804,blat.proc3825164.chain_1805	8
scaffold_28	retained_intron	3523207	3523344	-	asmbl_38153	none	STRG.29571.2,blat.proc3825162.chain_2723	2	STRG.29571.1	1
scaffold_8	retained_intron	14569488	14569706	+	asmbl_53378	none	blat.proc3825168.chain_3107	1	STRG.10543.1,STRG.10543.3,blat.proc3825168.chain_3106	3
scaffold_9	alternate_exon	16564559	16565837	-	asmbl_55588	none	Trinity_GG_6524_c0_g1_i4,blat.proc3825154.chain_269	2	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_271,blat.proc3825154.chain_274	6
scaffold_13	skipped_exon	15511199	15512431	+	asmbl_11513	none	STRG.16593.2	1	STRG.16593.1,Trinity_GG_26459_c0_g1_i1,blat.proc3825172.chain_1398,blat.proc3825172.chain_1400	4
scaffold_13	spliced_intron	3736104	3736197	+	asmbl_10730,asmbl_10731,asmbl_10732,asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737,asmbl_10738	none	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_445,blat.proc3825172.chain_446,blat.proc3825172.chain_448,blat.proc3825172.chain_449	13	Trinity_GG_25941_c0_g1_i11,blat.proc3825172.chain_442	2
scaffold_18	alternate_exon	1602540	1602778	+	asmbl_20365	none	STRG.21042.2,blat.proc3825174.chain_1982,blat.proc3825174.chain_1983	3	STRG.21042.1,blat.proc3825174.chain_1984	2
scaffold_8	ends_in_intron	12951444	12951444	-	asmbl_52259	none	Trinity_GG_5818_c0_g1_i1,blat.proc3825152.chain_2702	2	STRG.10475.1,blat.proc3825152.chain_2701	2
scaffold_25	retained_intron	337611	337824	+	asmbl_33324	none	STRG.27077.3	1	STRG.27077.1	1
scaffold_12	starts_in_intron	11022725	11022725	-	asmbl_8776	none	blat.proc3825154.chain_3489	1	STRG.15057.1,blat.proc3825154.chain_3490	2
scaffold_14	starts_in_intron	4681345	4681345	-	asmbl_13061	none	STRG.17006.1,blat.proc3825156.chain_1833	2	STRG.17006.2,blat.proc3825156.chain_1832	2
scaffold_3	ends_in_intron	18123127	18123127	+	asmbl_40726	none	blat.proc3825166.chain_517	1	STRG.4024.1	1
scaffold_2	starts_in_intron	10723311	10723311	+	asmbl_24730	none	STRG.2242.2	1	STRG.2242.1,blat.proc3825164.chain_2368,blat.proc3825164.chain_2369	3
scaffold_23	spliced_intron	7982619	7982719	+	asmbl_31746	none	STRG.26109.1	1	blat.proc3825176.chain_3062	1
scaffold_1	alt_acceptor	9327740	9327741	+	asmbl_1985	none	STRG.634.1	1	STRG.634.2	1
scaffold_10	skipped_exon	13284018	13285767	-	asmbl_4864,asmbl_4865,asmbl_4871	none	STRG.12922.2,STRG.12922.4,blat.proc3825154.chain_1546,blat.proc3825154.chain_1547	4	blat.proc3825154.chain_1545	1
scaffold_6	spliced_intron	18691242	18691696	+	asmbl_47841,asmbl_47843	none	STRG.8537.1,STRG.8537.2,Trinity_GG_22011_c0_g1_i1,blat.proc3825168.chain_1009	4	Trinity_GG_22011_c0_g2_i1,blat.proc3825168.chain_1010	2
scaffold_13	retained_exon	6396424	6396467	+	asmbl_10925,asmbl_10929	none	STRG.15929.4,Trinity_GG_26055_c0_g1_i1,blat.proc3825172.chain_652	3	STRG.15929.3,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	4
scaffold_4	alt_donor	16609578	16609579	-	asmbl_43201	none	STRG.5239.1,blat.proc3825150.chain_1422	2	STRG.5239.2	1
scaffold_25	spliced_intron	101644	101716	+	asmbl_33314	none	STRG.27044.1,Trinity_GG_32253_c0_g1_i2,blat.proc3825178.chain_244	3	blat.proc3825178.chain_245	1
scaffold_9	spliced_intron	11054396	11054475	+	asmbl_54331	none	STRG.11418.2,blat.proc3825170.chain_265	2	STRG.11418.1,blat.proc3825170.chain_266	2
scaffold_11	starts_in_intron	2062645	2062645	+	asmbl_5355	none	Trinity_GG_24663_c0_g1_i3,blat.proc3825170.chain_1923	2	STRG.13366.1,STRG.13366.2,STRG.13366.3,STRG.13366.4,blat.proc3825170.chain_1922,blat.proc3825170.chain_1924	6
scaffold_6	starts_in_intron	12440949	12440949	-	asmbl_48808	none	blat.proc3825152.chain_381	1	STRG.8000.1,blat.proc3825152.chain_380	2
scaffold_24	alt_acceptor	9073114	9073115	+	asmbl_32489,asmbl_32497	none	STRG.26950.2,Trinity_GG_32214_c0_g1_i6,blat.proc3825178.chain_151	3	STRG.26950.1,Trinity_GG_32214_c0_g1_i3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_148,blat.proc3825178.chain_149,blat.proc3825178.chain_150	7
scaffold_18	spliced_intron	2394215	2394398	-	asmbl_19725	none	STRG.21118.1	1	STRG.21118.2,Trinity_GG_11836_c0_g1_i1,blat.proc3825158.chain_2094,blat.proc3825158.chain_2095	4
scaffold_2	starts_in_intron	14746017	14746017	+	asmbl_24978,asmbl_24979	none	Trinity_GG_18661_c0_g1_i2,Trinity_GG_18661_c0_g1_i8,blat.proc3825164.chain_2629,blat.proc3825164.chain_2631	4	STRG.2475.1,STRG.2475.2,blat.proc3825164.chain_2627,blat.proc3825164.chain_2630	4
scaffold_15	retained_intron	12421366	12422732	+	asmbl_15561	none	blat.proc3825172.chain_3323	1	STRG.18696.2	1
scaffold_6	alt_donor	13918424	13918425	-	asmbl_48957	none	Trinity_GG_4635_c1_g1_i2,blat.proc3825152.chain_571	2	STRG.8139.3	1
scaffold_20	alt_donor	2844722	2844723	-	asmbl_25676	none	STRG.23019.4,blat.proc3825160.chain_42	2	STRG.23019.1,blat.proc3825160.chain_41,blat.proc3825160.chain_43	3
scaffold_1	alt_acceptor	5685354	5685355	+	asmbl_1748	none	STRG.368.2	1	STRG.368.1,blat.proc3825164.chain_493,blat.proc3825164.chain_494	3
scaffold_20	alternate_exon	6974887	6975819	+	asmbl_26689	none	STRG.23262.1	1	STRG.23262.3	1
scaffold_9	spliced_intron	6902292	6902430	-	asmbl_55087,asmbl_55088,asmbl_55090	none	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3389,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	5	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3394	4
scaffold_1	retained_intron	5735334	5735977	+	asmbl_1771	none	blat.proc3825164.chain_510	1	STRG.389.1,STRG.389.2,blat.proc3825164.chain_505,blat.proc3825164.chain_506,blat.proc3825164.chain_508,blat.proc3825164.chain_509	6
scaffold_1	alternate_exon	11801246	11801419	-	asmbl_670	none	STRG.796.1	1	blat.proc3825148.chain_791	1
scaffold_6	alt_acceptor	3214941	3214942	-	asmbl_48230,asmbl_48232	none	STRG.7327.2,blat.proc3825150.chain_3410,blat.proc3825150.chain_3411	3	STRG.7327.1,STRG.7327.3,blat.proc3825150.chain_3412	3
scaffold_27	skipped_exon	932171	933022	-	asmbl_36721	none	STRG.28588.4	1	STRG.28588.1,STRG.28588.2,STRG.28588.3,blat.proc3825162.chain_1833,blat.proc3825162.chain_1834,blat.proc3825162.chain_1835,blat.proc3825162.chain_1836	7
scaffold_13	alt_acceptor	7219583	7219584	+	asmbl_11019,asmbl_11022,asmbl_11024,asmbl_11026	none	STRG.16019.1,blat.proc3825172.chain_810,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_815	5	blat.proc3825172.chain_809,blat.proc3825172.chain_811	2
scaffold_25	spliced_intron	979268	979402	+	asmbl_33361	none	blat.proc3825178.chain_251	1	Trinity_GG_32255_c2_g1_i1,blat.proc3825178.chain_252	2
scaffold_28	spliced_intron	5735192	5735278	-	asmbl_38318	none	STRG.29709.1,Trinity_GG_16644_c0_g1_i1,blat.proc3825162.chain_2869	3	Trinity_GG_16644_c0_g1_i2,blat.proc3825162.chain_2868	2
scaffold_2	retained_intron	7240470	7240767	+	asmbl_24554	none	blat.proc3825164.chain_2169	1	STRG.2055.1,blat.proc3825164.chain_2167,blat.proc3825164.chain_2170,blat.proc3825164.chain_2171,blat.proc3825164.chain_2172,blat.proc3825164.chain_2173	6
scaffold_13	alt_donor	6396468	6396469	+	asmbl_10923	none	STRG.15929.2,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_655	3	STRG.15929.3,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	4
scaffold_11	starts_in_intron	27411	27411	+	asmbl_5251	none	blat.proc3825170.chain_1788	1	STRG.13228.1,blat.proc3825170.chain_1789	2
scaffold_6	alternate_exon	1746258	1746304	+	asmbl_46740	none	STRG.7231.3	1	STRG.7231.4,STRG.7231.5,blat.proc3825166.chain_3352	3
scaffold_22	spliced_intron	752536	752836	+	asmbl_29887	none	STRG.24734.1,Trinity_GG_30996_c0_g1_i1,blat.proc3825176.chain_1879	3	Trinity_GG_30996_c0_g1_i3,blat.proc3825176.chain_1878	2
scaffold_7	alternate_exon	3965525	3965719	+	asmbl_49707	none	STRG.8798.2,blat.proc3825168.chain_1263	2	STRG.8798.1,blat.proc3825168.chain_1264	2
scaffold_27	alternate_exon	3124554	3127318	+	asmbl_36189,asmbl_36190	none	Trinity_GG_33197_c0_g1_i2,Trinity_GG_33197_c0_g1_i3,blat.proc3825178.chain_1838,blat.proc3825178.chain_1839	4	STRG.28805.3,blat.proc3825178.chain_1837	2
scaffold_14	skipped_exon	9071662	9071971	+	asmbl_12270	none	STRG.17319.2	1	STRG.17319.1,blat.proc3825172.chain_2081	2
scaffold_21	retained_exon	8278485	8278505	+	asmbl_28806	none	STRG.24368.3	1	blat.proc3825176.chain_1550	1
scaffold_12	retained_intron	14123813	14123946	-	asmbl_8991	none	Trinity_GG_8555_c0_g1_i1,Trinity_GG_8555_c0_g1_i3,blat.proc3825156.chain_77	3	STRG.15244.1,STRG.15244.2,STRG.15244.3,blat.proc3825156.chain_75	4
scaffold_19	spliced_intron	13010263	13010705	-	asmbl_22579,asmbl_22581,asmbl_22583	none	STRG.22624.1,STRG.22624.2,blat.proc3825158.chain_3455,blat.proc3825158.chain_3456,blat.proc3825158.chain_3457	5	Trinity_GG_12599_c0_g1_i4,blat.proc3825158.chain_3454	2
scaffold_10	alternate_exon	17176999	17178657	+	asmbl_3747	none	STRG.13167.1	1	STRG.13167.2	1
scaffold_16	ends_in_intron	2170121	2170121	+	asmbl_16115	none	blat.proc3825172.chain_3726	1	STRG.19116.1,STRG.19116.2,blat.proc3825172.chain_3723,blat.proc3825172.chain_3725,blat.proc3825172.chain_3727	5
scaffold_6	spliced_intron	15760487	15760603	-	asmbl_49081,asmbl_49082,asmbl_49084,asmbl_49085,asmbl_49086	none	STRG.8318.1,STRG.8318.2,STRG.8318.3,blat.proc3825152.chain_757,blat.proc3825152.chain_758,blat.proc3825152.chain_759	6	Trinity_GG_4745_c0_g1_i4,blat.proc3825152.chain_760	2
scaffold_26	retained_exon	5983388	5983402	+	asmbl_35064,asmbl_35065	none	blat.proc3825178.chain_1429,blat.proc3825178.chain_1431	2	STRG.28312.1,Trinity_GG_32976_c0_g1_i4,blat.proc3825178.chain_1430,blat.proc3825178.chain_1433	4
scaffold_24	alt_acceptor	162865	162866	-	asmbl_32699	none	STRG.26320.2,Trinity_GG_14715_c0_g1_i3,blat.proc3825160.chain_3447	3	STRG.26320.1	1
scaffold_9	ends_in_intron	5019095	5019095	+	asmbl_53979	none	STRG.11074.1,Trinity_GG_23480_c0_g1_i1,blat.proc3825168.chain_3601	3	STRG.11074.2,Trinity_GG_23480_c0_g1_i2,Trinity_GG_23480_c0_g1_i3,blat.proc3825168.chain_3599,blat.proc3825168.chain_3600	5
scaffold_7	alternate_exon	10549304	10549353	-	asmbl_51134	none	STRG.9231.3	1	STRG.9231.1,blat.proc3825152.chain_1586	2
scaffold_21	retained_intron	4944460	4944587	+	asmbl_28541	none	blat.proc3825176.chain_1191	1	STRG.24044.1,blat.proc3825176.chain_1190,blat.proc3825176.chain_1192	3
scaffold_5	spliced_intron	11992233	11993057	-	asmbl_44427,asmbl_44429,asmbl_44430,asmbl_44431,asmbl_44433	none	STRG.6453.4,STRG.6453.5,STRG.6453.8,STRG.6453.9,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	6	STRG.6453.2,blat.proc3825150.chain_2615	2
scaffold_11	alternate_exon	9721926	9722100	+	asmbl_5892	none	STRG.13987.1,blat.proc3825170.chain_2507	2	STRG.13987.2,Trinity_GG_25005_c0_g1_i1,blat.proc3825170.chain_2506	3
scaffold_26	alt_donor	9089202	9089203	-	asmbl_35768	none	STRG.28474.1,blat.proc3825162.chain_1694	2	STRG.28474.2,blat.proc3825162.chain_1693	2
scaffold_17	spliced_intron	1291368	1292422	-	asmbl_17683	none	blat.proc3825158.chain_972	1	STRG.19964.6,blat.proc3825158.chain_970	2
scaffold_21	alternate_exon	1758526	1758796	-	asmbl_27421	none	STRG.23823.1,blat.proc3825160.chain_961	2	blat.proc3825160.chain_962	1
scaffold_17	spliced_intron	9531029	9531393	+	asmbl_19102	none	STRG.20578.1,Trinity_GG_28562_c0_g1_i8,blat.proc3825174.chain_1400	3	STRG.20578.3,blat.proc3825174.chain_1397,blat.proc3825174.chain_1399	3
scaffold_1	alt_donor	13929526	13929527	-	asmbl_865	none	STRG.1001.1	1	STRG.1001.2	1
scaffold_19	skipped_exon	6255614	6257998	+	asmbl_21405	none	blat.proc3825174.chain_3101	1	STRG.22161.1,blat.proc3825174.chain_3102	2
scaffold_3	skipped_exon	13986406	13987046	-	asmbl_39318	none	STRG.3742.2,blat.proc3825148.chain_3650	2	STRG.3742.1,blat.proc3825148.chain_3649	2
scaffold_23	ends_in_intron	1198655	1198655	+	asmbl_31315	none	blat.proc3825176.chain_2592	1	STRG.25599.1,blat.proc3825176.chain_2589,blat.proc3825176.chain_2591	3
scaffold_28	starts_in_intron	7229229	7229229	+	asmbl_37640	none	blat.proc3825178.chain_2934	1	STRG.29787.1,blat.proc3825178.chain_2935	2
scaffold_17	ends_in_intron	7090530	7090530	-	asmbl_18041	none	Trinity_GG_11420_c0_g1_i1,blat.proc3825158.chain_1350	2	STRG.20375.1,Trinity_GG_11420_c0_g1_i2,blat.proc3825158.chain_1351	3
scaffold_2	alt_donor	14434184	14434185	+	asmbl_24932	none	STRG.2450.2,blat.proc3825164.chain_2699	2	STRG.2450.1	1
scaffold_17	retained_exon	4005321	4005465	+	asmbl_18761	none	STRG.20163.2,blat.proc3825174.chain_1054	2	STRG.20163.1	1
scaffold_22	retained_intron	7882885	7884431	-	asmbl_29429,asmbl_29431	none	STRG.25144.1,blat.proc3825160.chain_2298	2	blat.proc3825160.chain_2297	1
scaffold_22	skipped_exon	7120943	7123351	+	asmbl_30156,asmbl_30159	none	STRG.25047.2,Trinity_GG_31177_c0_g1_i3,blat.proc3825176.chain_2180,blat.proc3825176.chain_2181	4	STRG.25047.1,Trinity_GG_31177_c0_g1_i6,blat.proc3825176.chain_2177,blat.proc3825176.chain_2179	4
scaffold_22	alternate_exon	4343452	4344994	+	asmbl_29980	none	STRG.24852.1,blat.proc3825176.chain_1948	2	STRG.24852.3,blat.proc3825176.chain_1949	2
scaffold_1	ends_in_intron	5740773	5740773	+	asmbl_1777,asmbl_1778,asmbl_1782	none	blat.proc3825164.chain_524,blat.proc3825164.chain_529,blat.proc3825164.chain_530	3	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528	5
scaffold_18	starts_in_intron	815245	815245	+	asmbl_20324	none	blat.proc3825174.chain_1945	1	STRG.21006.1,STRG.21006.2,blat.proc3825174.chain_1947,blat.proc3825174.chain_1948,blat.proc3825174.chain_1950	5
scaffold_10	alt_donor	15481387	15481388	-	asmbl_4985	none	STRG.13068.1,blat.proc3825154.chain_1630	2	STRG.13068.2	1
scaffold_10	alt_acceptor	12819855	12819856	+	asmbl_3548	none	STRG.12867.2	1	STRG.12867.1,blat.proc3825170.chain_1475,blat.proc3825170.chain_1476	3
scaffold_6	spliced_intron	5021998	5022641	-	asmbl_48386	none	STRG.7480.2	1	STRG.7480.1,Trinity_GG_4207_c0_g1_i2,Trinity_GG_4207_c0_g1_i5,blat.proc3825150.chain_3612,blat.proc3825150.chain_3613	5
scaffold_11	alternate_exon	2299115	2299182	-	asmbl_6493	none	STRG.13394.2,blat.proc3825154.chain_1960	2	STRG.13394.1,blat.proc3825154.chain_1961	2
scaffold_23	alt_acceptor	7513089	7513090	-	asmbl_31035	none	STRG.26071.1	1	STRG.26071.2,blat.proc3825160.chain_3241	2
scaffold_11	starts_in_intron	1016197	1016197	-	asmbl_6405	none	blat.proc3825154.chain_1858	1	STRG.13302.1,STRG.13302.2,blat.proc3825154.chain_1856,blat.proc3825154.chain_1857	4
scaffold_14	alt_donor	14248493	14248494	+	asmbl_12530	none	STRG.17690.2	1	STRG.17690.1	1
scaffold_14	alternate_exon	15609159	15609442	-	asmbl_13734	none	STRG.17803.3	1	STRG.17803.1,blat.proc3825156.chain_2616	2
scaffold_3180	alt_acceptor	367	368	-	asmbl_40943	none	blat.proc3825176.chain_3319	1	blat.proc3825178.chain_3726	1
scaffold_1	spliced_intron	43037	43442	-	asmbl_2,asmbl_3,asmbl_8	none	STRG.11.1,STRG.11.3,blat.proc3825148.chain_63,blat.proc3825148.chain_64	4	STRG.11.2,Trinity_GG_34_c0_g2_i1,blat.proc3825148.chain_65	3
scaffold_11	spliced_intron	8399407	8399497	+	asmbl_5761,asmbl_5762,asmbl_5763,asmbl_5764	none	STRG.13857.1,STRG.13857.2,STRG.13857.3,Trinity_GG_24940_c0_g1_i11,blat.proc3825170.chain_2390,blat.proc3825170.chain_2391,blat.proc3825170.chain_2394,blat.proc3825170.chain_2395,blat.proc3825170.chain_2397	9	blat.proc3825170.chain_2392,blat.proc3825170.chain_2393,blat.proc3825170.chain_2396	3
scaffold_11	alternate_exon	2450051	2464581	-	asmbl_6501,asmbl_6503	none	STRG.13398.1,STRG.13398.2,Trinity_GG_7448_c3_g1_i1,blat.proc3825154.chain_1877,blat.proc3825154.chain_1880	5	STRG.13398.3,blat.proc3825154.chain_1878	2
scaffold_25	alt_acceptor	9540568	9540569	+	asmbl_33828	none	STRG.27767.2	1	STRG.27767.1,Trinity_GG_32610_c0_g1_i1	2
scaffold_21	spliced_intron	5153424	5153601	-	asmbl_27618	none	STRG.24049.2	1	STRG.24049.1,blat.proc3825160.chain_1188	2
scaffold_19	alt_donor	13155026	13155027	-	asmbl_22604,asmbl_22606	none	STRG.22639.2,blat.proc3825158.chain_3470,blat.proc3825158.chain_3471	3	STRG.22639.1,blat.proc3825158.chain_3472	2
scaffold_22	retained_exon	4232260	4232328	-	asmbl_29212,asmbl_29214,asmbl_29223,asmbl_29225,asmbl_29226	none	STRG.24845.1,STRG.24845.2,blat.proc3825160.chain_2069,blat.proc3825160.chain_2071,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078	6	STRG.24845.3,blat.proc3825160.chain_2070,blat.proc3825160.chain_2075,blat.proc3825160.chain_2079	4
scaffold_2	retained_exon	9862236	9862343	-	asmbl_23395	none	STRG.2188.1,blat.proc3825148.chain_2216	2	STRG.2188.2	1
scaffold_6	ends_in_intron	16292030	16292030	-	asmbl_49112,asmbl_49115	none	STRG.8352.2,Trinity_GG_4762_c0_g2_i1,blat.proc3825152.chain_792	3	STRG.8352.1,blat.proc3825152.chain_790,blat.proc3825152.chain_791	3
scaffold_16	alternate_exon	1251961	1254816	-	asmbl_16939,asmbl_16940	none	STRG.19087.1,STRG.19087.2,blat.proc3825158.chain_222,blat.proc3825158.chain_224	4	STRG.19087.3	1
scaffold_16	starts_in_intron	3866715	3866715	-	asmbl_17010	none	blat.proc3825158.chain_336	1	STRG.19196.1,STRG.19196.2,STRG.19196.3,blat.proc3825158.chain_332,blat.proc3825158.chain_333	5
scaffold_10	starts_in_intron	7279224	7279224	-	asmbl_4538,asmbl_4539	none	blat.proc3825154.chain_1098,blat.proc3825154.chain_1100	2	STRG.12543.1	1
scaffold_20	ends_in_intron	9149786	9149786	+	asmbl_26837	none	blat.proc3825176.chain_624	1	STRG.23461.1,blat.proc3825176.chain_625	2
scaffold_21	alternate_exon	3157162	3157666	+	asmbl_28465	none	STRG.23959.6	1	STRG.23959.1,STRG.23959.2,STRG.23959.3,STRG.23959.4,STRG.23959.5,blat.proc3825176.chain_1132,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	12
scaffold_15	retained_intron	4231266	4231387	+	asmbl_15135	none	blat.proc3825172.chain_2836	1	Trinity_GG_27280_c0_g1_i5,blat.proc3825172.chain_2839	2
scaffold_14	starts_in_intron	14063528	14063528	-	asmbl_13672	none	blat.proc3825156.chain_2518	1	STRG.17675.1,blat.proc3825156.chain_2519	2
scaffold_5	alt_acceptor	19029102	19029103	-	asmbl_44885	none	STRG.7022.4	1	STRG.7022.1,STRG.7022.2,STRG.7022.5,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133	5
scaffold_7	ends_in_intron	8510800	8510800	+	asmbl_50005,asmbl_50006	none	blat.proc3825168.chain_1605,blat.proc3825168.chain_1609	2	STRG.9078.1,STRG.9078.2,STRG.9078.3,blat.proc3825168.chain_1604,blat.proc3825168.chain_1607	5
scaffold_26	alternate_exon	9514061	9514148	+	asmbl_35238	none	STRG.28502.1,blat.proc3825178.chain_1624	2	STRG.28502.2	1
scaffold_10	starts_in_intron	17352752	17352752	+	asmbl_3767	none	STRG.13186.2,blat.proc3825170.chain_1715	2	STRG.13186.1,blat.proc3825170.chain_1716	2
scaffold_13	starts_in_intron	11271700	11271700	-	asmbl_10077	none	STRG.16288.2	1	STRG.16288.1,blat.proc3825156.chain_1099	2
scaffold_20	starts_in_intron	816186	816186	+	asmbl_26381	none	blat.proc3825174.chain_3724	1	STRG.22794.1,blat.proc3825174.chain_3725	2
scaffold_23	alternate_exon	5620237	5620444	-	asmbl_30930	none	STRG.25937.4	1	STRG.25937.1	1
scaffold_20	alt_acceptor	631183	631184	-	asmbl_25503	none	STRG.22765.1,blat.proc3825158.chain_3610	2	STRG.22765.3,blat.proc3825158.chain_3609	2
scaffold_5	alt_donor	13801669	13801670	-	asmbl_44563	none	blat.proc3825150.chain_2811	1	STRG.6602.1,STRG.6602.3,blat.proc3825150.chain_2813,blat.proc3825150.chain_2814,blat.proc3825150.chain_2815	5
scaffold_21	alt_donor	33428	33429	-	asmbl_27268	none	STRG.23713.1,blat.proc3825160.chain_820	2	STRG.23713.2,blat.proc3825160.chain_819	2
scaffold_6	alt_acceptor	2536167	2536168	+	asmbl_46763	none	STRG.7255.2	1	STRG.7255.1	1
scaffold_78	alt_acceptor	17360	17361	+	asmbl_51659	none	STRG.30126.2	1	STRG.30126.1,Trinity_GG_33987_c0_g1_i2	2
scaffold_23	spliced_intron	5861645	5861736	-	asmbl_30951,asmbl_30952	none	STRG.25971.1,Trinity_GG_14540_c0_g1_i2,Trinity_GG_14540_c0_g1_i3,blat.proc3825160.chain_3150,blat.proc3825160.chain_3151	5	Trinity_GG_14540_c0_g1_i5,blat.proc3825160.chain_3152	2
scaffold_10	retained_intron	12895228	12895356	-	asmbl_4838	none	blat.proc3825154.chain_1473	1	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1475	3
scaffold_6	alt_acceptor	13193048	13193049	+	asmbl_47485	none	blat.proc3825168.chain_559	1	STRG.8078.1,blat.proc3825168.chain_560	2
scaffold_22	alternate_exon	2393813	2393884	+	asmbl_29940	none	blat.proc3825176.chain_1826	1	STRG.24781.1,blat.proc3825176.chain_1827,blat.proc3825176.chain_1828	3
scaffold_5	alt_donor	10170961	10170962	+	asmbl_45665	none	blat.proc3825166.chain_2511	1	STRG.6320.1,blat.proc3825166.chain_2512	2
scaffold_2	alt_donor	5200440	5200441	+	asmbl_24396	none	STRG.1940.1,Trinity_GG_18384_c0_g1_i3,blat.proc3825164.chain_2048	3	STRG.1940.2	1
scaffold_23	starts_in_intron	7022278	7022278	+	asmbl_31665	none	Trinity_GG_31670_c0_g1_i2,blat.proc3825176.chain_2961	2	STRG.26029.1	1
scaffold_14	alternate_exon	12630087	12634625	-	asmbl_13582	none	blat.proc3825156.chain_2419	1	STRG.17582.2,blat.proc3825156.chain_2421	2
scaffold_52	alt_acceptor	14408	14409	+	asmbl_46531,asmbl_46534	none	STRG.30061.3,blat.proc3825178.chain_3185,blat.proc3825178.chain_3188	3	STRG.30061.1,STRG.30061.2,blat.proc3825178.chain_3186,blat.proc3825178.chain_3187	4
scaffold_15	alternate_exon	6194912	6195046	+	asmbl_15248,asmbl_15249	none	STRG.18283.4,STRG.18283.5	2	STRG.18283.1,STRG.18283.2	2
scaffold_23	starts_in_intron	2587001	2587001	-	asmbl_30746	none	Trinity_GG_14322_c1_g1_i5	1	STRG.25725.2,blat.proc3825160.chain_2777	2
scaffold_5	retained_exon	13660978	13661026	-	asmbl_44546,asmbl_44550	none	STRG.6585.1,blat.proc3825150.chain_2672,blat.proc3825150.chain_2674	3	STRG.6585.2,blat.proc3825150.chain_2670	2
scaffold_8	retained_intron	3101869	3101985	-	asmbl_51731	none	blat.proc3825152.chain_2113	1	STRG.9828.1,STRG.9828.2,blat.proc3825152.chain_2114,blat.proc3825152.chain_2115	4
scaffold_12	alt_acceptor	13392294	13392295	-	asmbl_8940,asmbl_8942,asmbl_8943,asmbl_8945	none	STRG.15219.3,STRG.15219.4,STRG.15219.5,blat.proc3825156.chain_4,blat.proc3825156.chain_5,blat.proc3825156.chain_6,blat.proc3825156.chain_8	7	STRG.15219.2	1
scaffold_10	retained_intron	6074390	6075518	-	asmbl_4425,asmbl_4426	none	blat.proc3825154.chain_1026,blat.proc3825154.chain_1027	2	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033	7
scaffold_8	spliced_intron	12194719	12195488	-	asmbl_52186	none	STRG.10405.1,blat.proc3825152.chain_2626	2	Trinity_GG_5777_c1_g1_i1,blat.proc3825152.chain_2625,blat.proc3825152.chain_2627	3
scaffold_19	alt_acceptor	6212920	6212921	+	asmbl_21398,asmbl_21402	none	STRG.22153.3,blat.proc3825174.chain_3104,blat.proc3825174.chain_3105	3	STRG.22153.1,STRG.22153.2,blat.proc3825174.chain_3106,blat.proc3825174.chain_3107	4
scaffold_1	retained_intron	1608805	1609003	+	asmbl_1497,asmbl_1498,asmbl_1501	none	Trinity_GG_17360_c0_g1_i3,Trinity_GG_17360_c0_g1_i4,Trinity_GG_17360_c0_g1_i5,blat.proc3825164.chain_163,blat.proc3825164.chain_164,blat.proc3825164.chain_165	6	Trinity_GG_17360_c0_g1_i2,blat.proc3825164.chain_167	2
scaffold_14	ends_in_intron	6291505	6291505	+	asmbl_12065	none	Trinity_GG_26712_c0_g1_i3,blat.proc3825172.chain_1845	2	STRG.17083.1,Trinity_GG_26712_c0_g1_i1,Trinity_GG_26712_c0_g1_i5,blat.proc3825172.chain_1842,blat.proc3825172.chain_1843,blat.proc3825172.chain_1844	6
scaffold_9	spliced_intron	9853059	9854248	+	asmbl_54264	none	STRG.11357.1,blat.proc3825170.chain_207	2	blat.proc3825170.chain_206	1
scaffold_6	skipped_exon	14116701	14117085	+	asmbl_47582	none	STRG.8177.1	1	STRG.8177.2	1
scaffold_10	spliced_intron	8896299	8896584	-	asmbl_4621,asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4626,asmbl_4628,asmbl_4631,asmbl_4632,asmbl_4633	none	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	11	blat.proc3825154.chain_1267,blat.proc3825154.chain_1271	2
scaffold_12	retained_intron	4549036	4549126	-	asmbl_8400	none	STRG.14628.2	1	STRG.14628.1,blat.proc3825154.chain_3091	2
scaffold_15	alt_donor	8637626	8637627	+	asmbl_15346	none	STRG.18414.2,Trinity_GG_27377_c0_g1_i1,blat.proc3825172.chain_3018	3	STRG.18414.1,Trinity_GG_27377_c0_g1_i2,blat.proc3825172.chain_3017	3
scaffold_9	alt_acceptor	9470273	9470274	-	asmbl_55179,asmbl_55180,asmbl_55182,asmbl_55184	none	STRG.11310.1,blat.proc3825152.chain_3566,blat.proc3825152.chain_3567,blat.proc3825152.chain_3571	4	STRG.11310.2,STRG.11310.3,blat.proc3825152.chain_3570	3
scaffold_2	spliced_intron	9191502	9191609	-	asmbl_23359,asmbl_23360,asmbl_23362,asmbl_23363,asmbl_23366	none	STRG.2171.1,STRG.2171.2,blat.proc3825148.chain_2197,blat.proc3825148.chain_2198,blat.proc3825148.chain_2199,blat.proc3825148.chain_2201,blat.proc3825148.chain_2202	7	blat.proc3825148.chain_2200,blat.proc3825148.chain_2203	2
scaffold_2	alternate_exon	6203175	6208982	-	asmbl_23184,asmbl_23187	none	STRG.1987.1,blat.proc3825148.chain_1932,blat.proc3825148.chain_1933	3	STRG.1987.2,Trinity_GG_1080_c3_g1_i1,blat.proc3825148.chain_1936	3
scaffold_28	retained_intron	2265643	2266048	-	asmbl_38029	none	blat.proc3825162.chain_2576	1	STRG.29401.1,STRG.29401.2,STRG.29401.3,blat.proc3825162.chain_2575,blat.proc3825162.chain_2577,blat.proc3825162.chain_2578,blat.proc3825162.chain_2579	7
scaffold_12	alt_donor	15426912	15426913	-	asmbl_9079	none	STRG.15346.2,blat.proc3825156.chain_196	2	STRG.15346.1,blat.proc3825156.chain_194	2
scaffold_10	ends_in_intron	6733403	6733403	-	asmbl_4497	none	STRG.12501.2,blat.proc3825154.chain_1089	2	STRG.12501.1	1
scaffold_4	retained_intron	13365831	13366046	-	asmbl_42990	none	STRG.4965.1,Trinity_GG_2736_c0_g1_i2,blat.proc3825150.chain_1102	3	STRG.4965.2,blat.proc3825150.chain_1103	2
scaffold_20	retained_exon	3253020	3253159	-	asmbl_25689	none	STRG.23047.1,blat.proc3825160.chain_129	2	STRG.23047.2,blat.proc3825160.chain_130	2
scaffold_15	retained_intron	15908373	15908721	-	asmbl_14810	none	blat.proc3825158.chain_61	1	STRG.18975.1,STRG.18975.2,blat.proc3825158.chain_63,blat.proc3825158.chain_64,blat.proc3825158.chain_65,blat.proc3825158.chain_66,blat.proc3825158.chain_67	7
scaffold_16	alt_donor	3829185	3829186	-	asmbl_17005	none	STRG.19188.2	1	STRG.19188.1	1
scaffold_7	retained_intron	1235897	1236590	+	asmbl_49602	none	STRG.8637.2	1	STRG.8637.4,STRG.8637.7,Trinity_GG_22033_c0_g1_i5	3
scaffold_23	retained_intron	248951	249926	-	asmbl_30572	none	STRG.25548.1,blat.proc3825160.chain_2704	2	STRG.25548.3,blat.proc3825160.chain_2705	2
scaffold_5	alt_donor	4687108	4687109	-	asmbl_43983,asmbl_43985,asmbl_43986,asmbl_43989,asmbl_43992,asmbl_43993,asmbl_43994,asmbl_43995	none	STRG.5929.1,STRG.5929.4,Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2075,blat.proc3825150.chain_2077,blat.proc3825150.chain_2078,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084,blat.proc3825150.chain_2085	11	blat.proc3825150.chain_2082	1
scaffold_3	alt_acceptor	16796998	16796999	-	asmbl_39516	none	STRG.3937.3	1	STRG.3937.1,blat.proc3825150.chain_66	2
scaffold_21	alt_acceptor	2594134	2594135	+	asmbl_28405	none	STRG.23891.2	1	STRG.23891.1,blat.proc3825176.chain_1099	2
scaffold_6	alternate_exon	9712063	9712545	-	asmbl_48634	none	STRG.7819.3,blat.proc3825152.chain_190	2	STRG.7819.1	1
scaffold_6	retained_intron	796568	796819	-	asmbl_48067,asmbl_48070	none	STRG.7142.2,STRG.7142.3,blat.proc3825150.chain_3254	3	STRG.7142.1,blat.proc3825150.chain_3253	2
scaffold_15	alternate_exon	14665078	14665608	+	asmbl_15696	none	STRG.18882.2,Trinity_GG_27665_c0_g1_i4,blat.proc3825172.chain_3504	3	STRG.18882.1,Trinity_GG_27665_c1_g1_i1,blat.proc3825172.chain_3507	3
scaffold_4	spliced_intron	16912206	16912492	+	asmbl_42009	none	STRG.5280.2	1	STRG.5280.4	1
scaffold_16	alternate_exon	7824795	7824847	+	asmbl_16357	none	STRG.19426.2,blat.proc3825174.chain_306	2	STRG.19426.1	1
scaffold_9	alternate_exon	12336347	12336631	-	asmbl_55373	none	STRG.11557.2	1	STRG.11557.1	1
scaffold_13	starts_in_intron	659559	659559	+	asmbl_10499	none	Trinity_GG_25801_c0_g1_i1,blat.proc3825172.chain_162	2	STRG.15452.1,STRG.15452.2,blat.proc3825172.chain_163	3
scaffold_23	retained_intron	7982612	7982719	+	asmbl_31747	none	blat.proc3825176.chain_3062	1	STRG.26109.2,blat.proc3825176.chain_3063	2
scaffold_25	alt_acceptor	3185586	3185587	-	asmbl_34110,asmbl_34111	none	STRG.27258.1,STRG.27258.3,blat.proc3825162.chain_576,blat.proc3825162.chain_577	4	STRG.27258.2,blat.proc3825162.chain_578	2
scaffold_5	skipped_exon	9692649	9693303	+	asmbl_45632	none	STRG.6292.2	1	STRG.6292.1,blat.proc3825166.chain_2489	2
scaffold_21	starts_in_intron	11262524	11262524	-	asmbl_28108	none	blat.proc3825160.chain_1803	1	STRG.24600.1,Trinity_GG_13755_c0_g1_i4,Trinity_GG_13755_c0_g1_i5,blat.proc3825160.chain_1802,blat.proc3825160.chain_1804	5
scaffold_10	alternate_exon	4342418	4342510	-	asmbl_4288	none	STRG.12277.2,blat.proc3825154.chain_838	2	STRG.12277.1	1
scaffold_24	skipped_exon	10130846	10133800	+	asmbl_32543	none	STRG.26980.1,Trinity_GG_32205_c1_g1_i1,blat.proc3825178.chain_131	3	STRG.26980.2	1
scaffold_18	retained_exon	3916539	3916635	-	asmbl_19784	none	STRG.21203.2	1	STRG.21203.5	1
scaffold_25	alternate_exon	882177	888290	-	asmbl_34011	none	STRG.27142.1,blat.proc3825162.chain_505	2	STRG.27142.2,blat.proc3825162.chain_506	2
scaffold_8	retained_intron	17498151	17498237	+	asmbl_53487,asmbl_53490	none	blat.proc3825168.chain_3151,blat.proc3825168.chain_3152	2	STRG.10682.1,STRG.10682.3,STRG.10682.5,blat.proc3825168.chain_3150,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	6
scaffold_7	spliced_intron	13889999	13890106	+	asmbl_50381	none	STRG.9487.1,Trinity_GG_22588_c0_g1_i1,blat.proc3825168.chain_2017	3	STRG.9487.2	1
scaffold_14	alt_donor	5598524	5598525	+	asmbl_12028,asmbl_12029	none	blat.proc3825172.chain_1828	1	STRG.17042.1,STRG.17042.2,blat.proc3825172.chain_1824,blat.proc3825172.chain_1830	4
scaffold_6	starts_in_intron	13982270	13982270	-	asmbl_48975	none	blat.proc3825152.chain_616	1	STRG.8159.1,blat.proc3825152.chain_612,blat.proc3825152.chain_614,blat.proc3825152.chain_615	4
scaffold_5	spliced_intron	14569065	14569231	-	asmbl_44599	none	STRG.6658.1,blat.proc3825150.chain_2785	2	blat.proc3825150.chain_2783,blat.proc3825150.chain_2784	2
scaffold_7	retained_intron	4931699	4933374	+	asmbl_49766,asmbl_49767	none	STRG.8852.4,blat.proc3825168.chain_1349,blat.proc3825168.chain_1350	3	STRG.8852.2,blat.proc3825168.chain_1347	2
scaffold_3	alt_acceptor	1448231	1448232	+	asmbl_39848	none	blat.proc3825164.chain_3190	1	STRG.2964.1,blat.proc3825164.chain_3191	2
scaffold_1	retained_exon	4239039	4239168	+	asmbl_1647	none	STRG.256.1,blat.proc3825164.chain_404	2	STRG.256.3,STRG.256.5,blat.proc3825164.chain_401	3
scaffold_20	spliced_intron	7910387	7910642	-	asmbl_25945	none	STRG.23344.2,blat.proc3825160.chain_469	2	STRG.23344.1,Trinity_GG_13039_c0_g1_i2,blat.proc3825160.chain_470	3
scaffold_14	retained_intron	6596360	6596436	+	asmbl_12092	none	Trinity_GG_26716_c0_g1_i2,blat.proc3825172.chain_1860	2	Trinity_GG_26716_c0_g1_i1,blat.proc3825172.chain_1859	2
scaffold_28	retained_intron	2724505	2724705	+	asmbl_37409,asmbl_37411	none	blat.proc3825178.chain_2681,blat.proc3825178.chain_2684	2	STRG.29459.1,STRG.29459.2,STRG.29459.3	3
scaffold_11	alternate_exon	3716520	3716562	-	asmbl_6566	none	STRG.13494.2,blat.proc3825154.chain_2058	2	STRG.13494.1,Trinity_GG_7555_c0_g2_i4	2
scaffold_20	alt_acceptor	9540928	9540929	-	asmbl_26041	none	STRG.23490.1,Trinity_GG_13070_c0_g1_i1,blat.proc3825160.chain_523	3	STRG.23490.2,Trinity_GG_13070_c0_g1_i2,blat.proc3825160.chain_524	3
scaffold_4	alternate_exon	6701398	6704323	+	asmbl_41424	none	STRG.4531.3	1	blat.proc3825166.chain_910	1
scaffold_18	alt_acceptor	12400332	12400333	-	asmbl_20143,asmbl_20146	none	STRG.21709.2,STRG.21709.3	2	blat.proc3825158.chain_2583	1
scaffold_5	alternate_exon	1179787	1179952	-	asmbl_43830	none	STRG.5668.2	1	STRG.5668.1,blat.proc3825150.chain_1938	2
scaffold_3	starts_in_intron	17781744	17781744	+	asmbl_40693,asmbl_40695	none	Trinity_GG_19551_c0_g1_i3,blat.proc3825166.chain_488,blat.proc3825166.chain_489	3	STRG.3995.1,STRG.3995.2,Trinity_GG_19551_c0_g1_i1,blat.proc3825166.chain_487	4
scaffold_22	alternate_exon	476494	479749	+	asmbl_29852	none	STRG.24692.1,Trinity_GG_30962_c0_g1_i2,blat.proc3825176.chain_1814	3	Trinity_GG_30962_c0_g1_i1,blat.proc3825176.chain_1813	2
scaffold_21	starts_in_intron	5518118	5518118	-	asmbl_27664	none	blat.proc3825160.chain_1266	1	STRG.24083.1,STRG.24083.3	2
scaffold_7	alt_acceptor	7615903	7615904	-	asmbl_50952,asmbl_50953	none	STRG.9014.2,STRG.9014.4	2	STRG.9014.1,STRG.9014.3,Trinity_GG_5063_c0_g1_i1,Trinity_GG_5063_c0_g1_i2,blat.proc3825152.chain_1351,blat.proc3825152.chain_1352	6
scaffold_8	retained_intron	14432596	14432761	+	asmbl_53372	none	blat.proc3825168.chain_3099	1	STRG.10530.1,blat.proc3825168.chain_3100	2
scaffold_24	spliced_intron	30069	30109	+	asmbl_32001	none	STRG.26314.1	1	STRG.26314.2	1
scaffold_25	retained_exon	5828682	5829053	-	asmbl_34287,asmbl_34288,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294	none	STRG.27479.1,STRG.27479.4,Trinity_GG_15422_c0_g1_i7,blat.proc3825162.chain_875,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_879,blat.proc3825162.chain_880	8	STRG.27479.2,STRG.27479.3	2
scaffold_18	alt_donor	12400382	12400383	-	asmbl_20142	none	blat.proc3825158.chain_2583	1	STRG.21709.2	1
scaffold_3	alt_donor	13424029	13424030	-	asmbl_39262,asmbl_39265	none	STRG.3693.3,blat.proc3825148.chain_3585	2	STRG.3693.4,blat.proc3825148.chain_3590	2
scaffold_5	alt_acceptor	1548524	1548525	-	asmbl_43861	none	STRG.5712.1	1	STRG.5712.2	1
scaffold_24	retained_exon	5384277	5384350	+	asmbl_32213	none	STRG.26629.1,blat.proc3825176.chain_3503	2	STRG.26629.2,blat.proc3825176.chain_3504	2
scaffold_4	alt_donor	18998198	18998199	+	asmbl_42120	none	STRG.5478.1,blat.proc3825166.chain_1782	2	STRG.5478.2,blat.proc3825166.chain_1781	2
scaffold_13	retained_intron	3529047	3529149	+	asmbl_10704	none	blat.proc3825172.chain_364	1	STRG.15676.1,STRG.15676.2,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_363	5
scaffold_6	starts_in_intron	3379137	3379137	-	asmbl_48255	none	STRG.7348.4	1	STRG.7348.5	1
scaffold_5	alternate_exon	18517267	18517343	-	asmbl_44842	none	STRG.6982.3,blat.proc3825150.chain_3061	2	STRG.6982.2,blat.proc3825150.chain_3063	2
scaffold_20	retained_intron	10861471	10862078	+	asmbl_26996,asmbl_26998	none	STRG.23612.1,Trinity_GG_30381_c0_g1_i3,Trinity_GG_30381_c0_g1_i4,blat.proc3825176.chain_805,blat.proc3825176.chain_807	5	STRG.23612.2,blat.proc3825176.chain_806	2
scaffold_13	retained_exon	7907698	7907775	+	asmbl_11080	none	STRG.16066.2,Trinity_GG_26143_c0_g1_i1,blat.proc3825172.chain_838	3	STRG.16066.1	1
scaffold_4	starts_in_intron	5647931	5647931	-	asmbl_42630	none	blat.proc3825150.chain_672	1	STRG.4472.1,blat.proc3825150.chain_669,blat.proc3825150.chain_670,blat.proc3825150.chain_671,blat.proc3825150.chain_673	5
scaffold_9	alt_donor	9688613	9688614	-	asmbl_55239	none	STRG.11346.3	1	STRG.11346.1,STRG.11346.2,blat.proc3825152.chain_3613,blat.proc3825152.chain_3614	4
scaffold_2	alt_donor	7880738	7880739	+	asmbl_24588	none	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291,blat.proc3825164.chain_2292	7
scaffold_11	retained_intron	8079637	8079771	+	asmbl_5713,asmbl_5714,asmbl_5715	none	STRG.13816.1,Trinity_GG_24895_c0_g1_i2,Trinity_GG_24895_c0_g1_i3,Trinity_GG_24895_c0_g1_i5,blat.proc3825170.chain_2309,blat.proc3825170.chain_2310,blat.proc3825170.chain_2311	7	Trinity_GG_24895_c0_g1_i1,blat.proc3825170.chain_2312	2
scaffold_15	starts_in_intron	1988557	1988557	+	asmbl_15048	none	blat.proc3825172.chain_2708	1	STRG.17988.1,STRG.17988.2,blat.proc3825172.chain_2706,blat.proc3825172.chain_2709	4
scaffold_17	starts_in_intron	11035759	11035759	-	asmbl_18265	none	STRG.20664.2	1	STRG.20664.3,STRG.20664.4,blat.proc3825158.chain_1638,blat.proc3825158.chain_1639	4
scaffold_6	spliced_intron	19076966	19077208	+	asmbl_47868,asmbl_47871,asmbl_47873	none	STRG.8575.1,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i6,Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_948,blat.proc3825168.chain_951,blat.proc3825168.chain_952	7	STRG.8575.3,Trinity_GG_21983_c2_g1_i1,blat.proc3825168.chain_954	3
scaffold_15	retained_intron	9730449	9730698	-	asmbl_14407	none	blat.proc3825156.chain_3290	1	STRG.18492.1,STRG.18492.2,STRG.18492.3,STRG.18492.4,Trinity_GG_10360_c0_g1_i2,blat.proc3825156.chain_3289,blat.proc3825156.chain_3291	7
scaffold_26	alternate_exon	3943947	3944524	-	asmbl_35515	none	STRG.28082.1	1	STRG.28082.3,blat.proc3825162.chain_1376	2
scaffold_15	retained_intron	15502183	15502253	+	asmbl_15803,asmbl_15804	none	STRG.18943.2,blat.proc3825172.chain_3603	2	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602	7
scaffold_6	retained_exon	2881249	2881305	-	asmbl_48181	none	STRG.7287.1,blat.proc3825150.chain_3405	2	STRG.7287.2,blat.proc3825150.chain_3407	2
scaffold_15	spliced_intron	4493112	4493215	+	asmbl_15140,asmbl_15142,asmbl_15143,asmbl_15145,asmbl_15146,asmbl_15148	none	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2858	8	blat.proc3825172.chain_2857	1
scaffold_27	retained_intron	4004657	4005068	+	asmbl_36244,asmbl_36249,asmbl_36250,asmbl_36252	none	STRG.28871.2,STRG.28871.6,Trinity_GG_33286_c0_g1_i7,blat.proc3825178.chain_2036,blat.proc3825178.chain_2038	5	STRG.28871.1,STRG.28871.3,STRG.28871.4,STRG.28871.5,blat.proc3825178.chain_2033,blat.proc3825178.chain_2037	6
scaffold_16	starts_in_intron	8094550	8094550	+	asmbl_16382	none	STRG.19453.2	1	STRG.19453.1,Trinity_GG_27939_c0_g1_i1,Trinity_GG_27939_c0_g1_i2,Trinity_GG_27939_c0_g1_i3,blat.proc3825174.chain_320,blat.proc3825174.chain_321,blat.proc3825174.chain_322	7
scaffold_23	ends_in_intron	6021249	6021249	-	asmbl_30965	none	Trinity_GG_14518_c0_g1_i1,blat.proc3825160.chain_3111	2	STRG.25968.1,blat.proc3825160.chain_3110	2
scaffold_21	alt_acceptor	3167832	3167833	+	asmbl_28457,asmbl_28468,asmbl_28470,asmbl_28471,asmbl_28472	none	STRG.23959.3,STRG.23959.4,STRG.23959.5,blat.proc3825176.chain_1132,blat.proc3825176.chain_1141	5	STRG.23959.1,STRG.23959.2,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1142	7
scaffold_9	starts_in_intron	9568360	9568360	-	asmbl_55199	none	blat.proc3825152.chain_3555	1	STRG.11318.1,blat.proc3825152.chain_3554	2
scaffold_14	alt_acceptor	15565929	15565930	+	asmbl_12619,asmbl_12625	none	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	3	STRG.17796.3,blat.proc3825172.chain_2534	2
scaffold_15	retained_intron	15409801	15410182	+	asmbl_15771	none	STRG.18930.4,blat.proc3825172.chain_3591	2	STRG.18930.10	1
scaffold_13	retained_intron	537327	537809	-	asmbl_9358,asmbl_9359,asmbl_9361,asmbl_9362	none	STRG.15447.1,STRG.15447.3,Trinity_GG_8674_c0_g1_i2,Trinity_GG_8674_c0_g1_i3,Trinity_GG_8674_c0_g1_i6,blat.proc3825156.chain_325,blat.proc3825156.chain_326,blat.proc3825156.chain_328	8	STRG.15447.2,Trinity_GG_8674_c0_g1_i1,blat.proc3825156.chain_327	3
scaffold_23	spliced_intron	5732593	5732880	+	asmbl_31593	none	STRG.25943.1,Trinity_GG_31589_c0_g1_i2,blat.proc3825176.chain_2811	3	STRG.25943.2,Trinity_GG_31589_c0_g1_i1,Trinity_GG_31589_c0_g1_i3,blat.proc3825176.chain_2812,blat.proc3825176.chain_2813	5
scaffold_17	alternate_exon	9571879	9571920	+	asmbl_19119	none	Trinity_GG_28588_c0_g1_i1,blat.proc3825174.chain_1455	2	STRG.20579.1,STRG.20579.2,blat.proc3825174.chain_1453,blat.proc3825174.chain_1454	4
scaffold_21	starts_in_intron	3973400	3973400	-	asmbl_27559	none	blat.proc3825160.chain_1122	1	STRG.23981.1,STRG.23981.2,blat.proc3825160.chain_1121	3
scaffold_16	alternate_exon	7115654	7115689	-	asmbl_17165	none	blat.proc3825158.chain_524	1	STRG.19389.2	1
scaffold_28	retained_intron	5014513	5014595	+	asmbl_37558,asmbl_37562	none	Trinity_GG_33747_c0_g1_i1,blat.proc3825178.chain_2829,blat.proc3825178.chain_2830	3	STRG.29651.1,STRG.29651.2,Trinity_GG_33747_c0_g1_i4,Trinity_GG_33747_c0_g2_i4,blat.proc3825178.chain_2828,blat.proc3825178.chain_2832,blat.proc3825178.chain_2833,blat.proc3825178.chain_2834	8
scaffold_20	spliced_intron	11695106	11695323	-	asmbl_26190	none	blat.proc3825160.chain_771	1	blat.proc3825160.chain_770	1
scaffold_13	retained_exon	8909678	8909835	+	asmbl_11156	none	STRG.16165.2,Trinity_GG_26201_c0_g1_i6,blat.proc3825172.chain_959	3	STRG.16165.1,blat.proc3825172.chain_955	2
scaffold_24	spliced_intron	1064662	1064849	+	asmbl_32065	none	STRG.26380.5	1	STRG.26380.1,Trinity_GG_31903_c0_g1_i1,Trinity_GG_31903_c0_g1_i2,blat.proc3825176.chain_3366,blat.proc3825176.chain_3368	5
scaffold_20	spliced_intron	1671485	1671524	+	asmbl_26443	none	STRG.22909.2	1	STRG.22909.1,Trinity_GG_29939_c0_g1_i1	2
scaffold_12	alt_acceptor	14132052	14132053	+	asmbl_8054	none	STRG.15242.2	1	STRG.15242.1,STRG.15242.3,blat.proc3825170.chain_3741	3
scaffold_18	ends_in_intron	2050878	2050878	-	asmbl_19691	none	Trinity_GG_11827_c1_g1_i2	1	STRG.21094.1,Trinity_GG_11827_c1_g1_i1,blat.proc3825158.chain_2074	3
scaffold_3	spliced_intron	10756104	10756206	+	asmbl_40295	none	STRG.3509.1,blat.proc3825166.chain_30	2	STRG.3509.2,blat.proc3825166.chain_29	2
scaffold_1	spliced_intron	12334369	12334829	-	asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_714,asmbl_715,asmbl_716	none	STRG.849.1,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	8	STRG.849.2,Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_831,blat.proc3825148.chain_837	4
scaffold_14	alternate_exon	13212834	13213071	+	asmbl_12458,asmbl_12461	none	STRG.17621.2,STRG.17621.3	2	STRG.17621.1	1
scaffold_3	alt_acceptor	14017039	14017040	+	asmbl_40493	none	STRG.3747.2,Trinity_GG_19407_c0_g1_i1,blat.proc3825166.chain_235	3	STRG.3747.1,Trinity_GG_19407_c0_g1_i2,blat.proc3825166.chain_234	3
scaffold_25	ends_in_intron	9051577	9051577	+	asmbl_33773	none	blat.proc3825178.chain_816	1	STRG.27716.1,blat.proc3825178.chain_817	2
scaffold_8	alternate_exon	3603907	3604458	+	asmbl_52782	none	STRG.9857.3,blat.proc3825168.chain_2402	2	STRG.9857.1,blat.proc3825168.chain_2404	2
scaffold_8	alternate_exon	17302728	17302777	-	asmbl_52445	none	STRG.10653.3,blat.proc3825152.chain_2901	2	STRG.10653.1,STRG.10653.2,blat.proc3825152.chain_2898,blat.proc3825152.chain_2900,blat.proc3825152.chain_2902	5
scaffold_15	starts_in_intron	4963610	4963610	+	asmbl_15179	none	Trinity_GG_27299_c0_g1_i8,blat.proc3825172.chain_2892	2	STRG.18207.1,STRG.18207.2,STRG.18207.3,STRG.18207.4,Trinity_GG_27299_c0_g1_i9,blat.proc3825172.chain_2889,blat.proc3825172.chain_2890,blat.proc3825172.chain_2893,blat.proc3825172.chain_2895	9
scaffold_13	retained_intron	6628218	6628496	-	asmbl_9812	none	Trinity_GG_8986_c0_g1_i3,blat.proc3825156.chain_868	2	STRG.15960.1,Trinity_GG_8986_c0_g1_i1,blat.proc3825156.chain_869	3
scaffold_24	spliced_intron	3655845	3656569	+	asmbl_32150	none	STRG.26550.3,Trinity_GG_31970_c0_g1_i5,blat.proc3825176.chain_3470	3	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3
scaffold_15	spliced_intron	15414405	15414510	+	asmbl_15777,asmbl_15779,asmbl_15781,asmbl_15782,asmbl_15783,asmbl_15784	none	STRG.18953.1,STRG.18953.4,STRG.18953.7,blat.proc3825172.chain_3607,blat.proc3825172.chain_3608,blat.proc3825172.chain_3610,blat.proc3825172.chain_3612	7	STRG.18953.2,STRG.18953.3,STRG.18953.5,STRG.18953.6,Trinity_GG_27701_c0_g1_i3,blat.proc3825172.chain_3611,blat.proc3825172.chain_3613	7
scaffold_1	spliced_intron	20341716	20341796	+	asmbl_2616	none	STRG.1396.4	1	blat.proc3825164.chain_1589	1
scaffold_32	alt_donor	37579	37580	+	asmbl_40950	none	STRG.30020.2	1	blat.proc3825168.chain_1062	1
scaffold_22	starts_in_intron	1654037	1654037	+	asmbl_29924	none	Trinity_GG_30984_c0_g1_i1,blat.proc3825176.chain_1854	2	STRG.24751.1,Trinity_GG_30984_c0_g1_i2,blat.proc3825176.chain_1855	3
scaffold_21	alt_donor	8173425	8173426	+	asmbl_28792	none	STRG.24353.1,blat.proc3825176.chain_1511	2	STRG.24353.2,blat.proc3825176.chain_1510	2
scaffold_11	ends_in_intron	2833893	2833893	+	asmbl_5380	none	blat.proc3825170.chain_1950	1	STRG.13415.1,blat.proc3825170.chain_1951,blat.proc3825170.chain_1952	3
scaffold_13	alt_donor	10435521	10435522	+	asmbl_11238,asmbl_11239	none	STRG.16250.1,STRG.16250.2,blat.proc3825172.chain_976,blat.proc3825172.chain_977	4	STRG.16250.3,STRG.16250.4,blat.proc3825172.chain_975	3
scaffold_18	retained_intron	9787711	9788236	-	asmbl_20084,asmbl_20085	none	Trinity_GG_12062_c0_g1_i2,blat.proc3825158.chain_2495,blat.proc3825158.chain_2496	3	STRG.21584.2	1
scaffold_15	alt_donor	4984029	4984030	-	asmbl_14179,asmbl_14182	none	STRG.18211.1,STRG.18211.3,blat.proc3825156.chain_3072	3	blat.proc3825156.chain_3070	1
scaffold_1	retained_intron	18033269	18033608	-	asmbl_1080	none	Trinity_GG_616_c0_g1_i1,blat.proc3825148.chain_1179	2	STRG.1269.1,Trinity_GG_616_c0_g1_i2,blat.proc3825148.chain_1180	3
scaffold_10	retained_intron	13471706	13472424	-	asmbl_4884,asmbl_4885	none	STRG.12943.1,STRG.12943.4,Trinity_GG_7233_c0_g1_i1,Trinity_GG_7233_c0_g2_i3,blat.proc3825154.chain_1531,blat.proc3825154.chain_1535	6	STRG.12943.2,blat.proc3825154.chain_1532,blat.proc3825154.chain_1533	3
scaffold_12	starts_in_intron	14160025	14160025	+	asmbl_8059	none	Trinity_GG_25707_c0_g1_i2,blat.proc3825170.chain_3745	2	STRG.15243.1,blat.proc3825170.chain_3744	2
scaffold_19	alt_acceptor	8805899	8805900	+	asmbl_21557	none	STRG.22329.4	1	STRG.22329.1,STRG.22329.2,blat.proc3825174.chain_3335	3
scaffold_8	spliced_intron	14134155	14134355	-	asmbl_52296,asmbl_52297	none	STRG.10519.1,STRG.10519.2	2	STRG.10519.3,blat.proc3825152.chain_2761	2
scaffold_7	retained_exon	1388753	1388863	-	asmbl_50718,asmbl_50722	none	STRG.8652.1,blat.proc3825152.chain_1118,blat.proc3825152.chain_1124	3	blat.proc3825152.chain_1117	1
scaffold_27	alt_acceptor	6258776	6258777	+	asmbl_36396,asmbl_36398	none	STRG.29016.3,blat.proc3825178.chain_2191	2	STRG.29016.2,blat.proc3825178.chain_2193,blat.proc3825178.chain_2194	3
scaffold_27	spliced_intron	4938413	4938601	+	asmbl_36325,asmbl_36326,asmbl_36328,asmbl_36329	none	STRG.28932.1,STRG.28932.2,STRG.28932.4,blat.proc3825178.chain_2145,blat.proc3825178.chain_2147	5	STRG.28932.3,blat.proc3825178.chain_2146	2
scaffold_13	skipped_exon	14561036	14563619	-	asmbl_10195	none	STRG.16504.4,blat.proc3825156.chain_1272	2	STRG.16504.3,STRG.16504.5,blat.proc3825156.chain_1270	3
scaffold_26	spliced_intron	3791532	3791799	+	asmbl_34838	none	STRG.28068.3	1	blat.proc3825178.chain_1145,blat.proc3825178.chain_1153	2
scaffold_17	retained_intron	9453670	9453880	+	asmbl_19082,asmbl_19088	none	STRG.20569.2,Trinity_GG_28584_c0_g1_i5,Trinity_GG_28584_c0_g1_i7,blat.proc3825174.chain_1437,blat.proc3825174.chain_1440	5	STRG.20569.3,STRG.20569.4,Trinity_GG_28584_c0_g1_i1,blat.proc3825174.chain_1441	4
scaffold_20	alternate_exon	2646296	2646407	-	asmbl_25663	none	STRG.23011.2	1	STRG.23011.1	1
scaffold_15	alt_acceptor	1508658	1508659	+	asmbl_15014	none	STRG.17964.2,Trinity_GG_27185_c0_g1_i4,blat.proc3825172.chain_2673	3	STRG.17964.1	1
scaffold_22	spliced_intron	6131523	6131689	+	asmbl_30096,asmbl_30099,asmbl_30104	none	STRG.24968.4,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120,blat.proc3825176.chain_2124	5	STRG.24968.7,Trinity_GG_31147_c0_g1_i4,blat.proc3825176.chain_2123	3
scaffold_23	spliced_intron	4449748	4450584	-	asmbl_30867	none	STRG.25862.3,Trinity_GG_14447_c0_g1_i1,blat.proc3825160.chain_3002	3	STRG.25862.2,Trinity_GG_14447_c0_g1_i4,blat.proc3825160.chain_3003	3
scaffold_17	alt_acceptor	20537	20538	+	asmbl_18535	none	STRG.19895.1,blat.proc3825174.chain_779	2	STRG.19895.2	1
scaffold_18	retained_intron	11328359	11328484	+	asmbl_20939	none	Trinity_GG_29277_c0_g1_i9,blat.proc3825174.chain_2690	2	STRG.21676.1,STRG.21676.2,blat.proc3825174.chain_2683,blat.proc3825174.chain_2691	4
scaffold_2	ends_in_intron	15673300	15673300	-	asmbl_23651	none	blat.proc3825148.chain_2494	1	STRG.2523.1,blat.proc3825148.chain_2493	2
scaffold_3	alt_acceptor	10934629	10934630	-	asmbl_39121,asmbl_39122	none	STRG.3545.1,STRG.3545.2,blat.proc3825148.chain_3370,blat.proc3825148.chain_3371	4	STRG.3545.3,STRG.3545.4	2
scaffold_18	spliced_intron	4077684	4077771	+	asmbl_20491,asmbl_20492,asmbl_20493,asmbl_20494	none	STRG.21208.1,blat.proc3825174.chain_2124	2	Trinity_GG_28969_c0_g1_i2,blat.proc3825174.chain_2125	2
scaffold_8	retained_intron	18161229	18161474	-	asmbl_52514	none	Trinity_GG_5967_c0_g1_i3,blat.proc3825152.chain_2998	2	STRG.10730.1,Trinity_GG_5967_c0_g1_i4,Trinity_GG_5967_c0_g1_i5,blat.proc3825152.chain_2997,blat.proc3825152.chain_2999,blat.proc3825152.chain_3000,blat.proc3825152.chain_3001	7
scaffold_7	spliced_intron	6042675	6042946	-	asmbl_50909	none	STRG.8910.5,blat.proc3825152.chain_1349	2	STRG.8910.1,Trinity_GG_5061_c0_g1_i13,Trinity_GG_5061_c0_g1_i3,Trinity_GG_5061_c0_g1_i4,blat.proc3825152.chain_1346,blat.proc3825152.chain_1347,blat.proc3825152.chain_1348	7
scaffold_13	spliced_intron	10609363	10610784	-	asmbl_10060	none	STRG.16267.2,blat.proc3825156.chain_1155	2	STRG.16267.1,Trinity_GG_9131_c0_g1_i4,blat.proc3825156.chain_1154,blat.proc3825156.chain_1156,blat.proc3825156.chain_1157	5
scaffold_1	alt_acceptor	5990020	5990021	+	asmbl_1812	none	STRG.394.1,blat.proc3825164.chain_547	2	STRG.394.2	1
scaffold_646	retained_intron	4980	5090	-	asmbl_49492,asmbl_49494	none	STRG.30417.2,STRG.30417.3,blat.proc3825162.chain_3525,blat.proc3825162.chain_3526	4	STRG.30417.1,blat.proc3825162.chain_3527	2
scaffold_8	starts_in_intron	17665609	17665609	-	asmbl_52478	none	Trinity_GG_5935_c0_g1_i2,blat.proc3825152.chain_2945	2	STRG.10680.1,STRG.10680.2,blat.proc3825152.chain_2946	3
scaffold_28	alt_donor	3735229	3735230	-	asmbl_38169,asmbl_38171	none	STRG.29587.3,blat.proc3825162.chain_2736	2	STRG.29587.1,STRG.29587.2,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2739	6
scaffold_11	spliced_intron	1304892	1305131	-	asmbl_6427	none	STRG.13321.1,blat.proc3825154.chain_1906	2	Trinity_GG_7464_c1_g1_i1,blat.proc3825154.chain_1905	2
scaffold_17	spliced_intron	14097321	14097576	-	asmbl_18407,asmbl_18408	none	STRG.20898.1,blat.proc3825158.chain_1841,blat.proc3825158.chain_1842	3	blat.proc3825158.chain_1843	1
scaffold_16	alt_acceptor	10746576	10746577	+	asmbl_16553,asmbl_16554	none	STRG.19627.2,STRG.19627.3,Trinity_GG_28064_c0_g1_i1,blat.proc3825174.chain_552	4	STRG.19627.1,Trinity_GG_28064_c0_g1_i2,blat.proc3825174.chain_551	3
scaffold_4	skipped_exon	16871896	16873535	-	asmbl_43225,asmbl_43227	none	STRG.5273.1,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	3	STRG.5273.2	1
scaffold_20	starts_in_intron	9816985	9816985	+	asmbl_26904	none	Trinity_GG_30317_c0_g1_i2,blat.proc3825176.chain_699	2	STRG.23526.1,blat.proc3825176.chain_700	2
scaffold_15	alt_acceptor	12392267	12392268	-	asmbl_14572	none	STRG.18695.3,blat.proc3825156.chain_3518	2	STRG.18695.2,STRG.18695.4	2
scaffold_1	retained_intron	20338943	20340702	+	asmbl_2615,asmbl_2616,asmbl_2617,asmbl_2619	none	STRG.1396.1,STRG.1396.3,STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	9	STRG.1396.2,blat.proc3825164.chain_1596	2
scaffold_26	retained_exon	6704291	6704368	-	asmbl_35696,asmbl_35698,asmbl_35700	none	STRG.28371.1,STRG.28371.2,blat.proc3825162.chain_1602,blat.proc3825162.chain_1604	4	STRG.28371.3	1
scaffold_6	ends_in_intron	7172718	7172718	+	asmbl_47051	none	blat.proc3825168.chain_87	1	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84	6
scaffold_7	alt_donor	16823434	16823435	-	asmbl_51415,asmbl_51416	none	blat.proc3825152.chain_1902,blat.proc3825152.chain_1904	2	STRG.9596.1,STRG.9596.2,blat.proc3825152.chain_1903	3
scaffold_7	retained_intron	12414914	12415002	-	asmbl_51218	none	blat.proc3825152.chain_1704	1	STRG.9346.1,blat.proc3825152.chain_1701,blat.proc3825152.chain_1703,blat.proc3825152.chain_1705	4
scaffold_16	starts_in_intron	8088788	8088788	-	asmbl_17228	none	blat.proc3825158.chain_572	1	STRG.19454.1,blat.proc3825158.chain_573,blat.proc3825158.chain_574	3
scaffold_10	alt_donor	2762614	2762615	-	asmbl_4124,asmbl_4127	none	STRG.12095.3,blat.proc3825154.chain_647,blat.proc3825154.chain_648	3	STRG.12095.1,STRG.12095.2,blat.proc3825154.chain_649	3
scaffold_19	alt_acceptor	6372366	6372367	-	asmbl_22205	none	STRG.22156.2	1	STRG.22156.1,blat.proc3825158.chain_2981,blat.proc3825158.chain_2982	3
scaffold_8	starts_in_intron	4240411	4240411	-	asmbl_51771	none	blat.proc3825152.chain_2104	1	STRG.9906.1,blat.proc3825152.chain_2101,blat.proc3825152.chain_2102	3
scaffold_11	alternate_exon	3496853	3497052	+	asmbl_5441	none	blat.proc3825170.chain_2033	1	blat.proc3825170.chain_2034	1
scaffold_5	spliced_intron	18561018	18561149	+	asmbl_46267,asmbl_46268,asmbl_46269,asmbl_46271,asmbl_46272,asmbl_46273	none	STRG.6987.1,STRG.6987.3,STRG.6987.4,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i4,Trinity_GG_21132_c0_g1_i7,Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3153,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	13	Trinity_GG_21132_c0_g1_i13,blat.proc3825166.chain_3156	2
scaffold_24	alt_acceptor	8554068	8554069	-	asmbl_33086	none	STRG.26869.1,blat.proc3825162.chain_237	2	STRG.26869.2,blat.proc3825162.chain_236	2
scaffold_5	spliced_intron	1250555	1251453	-	asmbl_43846,asmbl_43848	none	STRG.5688.1,blat.proc3825150.chain_1929,blat.proc3825150.chain_1933	3	Trinity_GG_3222_c0_g1_i5,Trinity_GG_3222_c0_g1_i6,blat.proc3825150.chain_1928,blat.proc3825150.chain_1930	4
scaffold_15	retained_exon	15323083	15323205	+	asmbl_15748	none	STRG.18917.1	1	STRG.18917.2,Trinity_GG_27684_c0_g1_i1,blat.proc3825172.chain_3557	3
scaffold_18	alternate_exon	9167323	9168048	+	asmbl_20878,asmbl_20881	none	STRG.21559.2,STRG.21559.3,Trinity_GG_29198_c0_g1_i2,blat.proc3825174.chain_2557	4	Trinity_GG_29198_c0_g1_i1,blat.proc3825174.chain_2558	2
scaffold_27	alternate_exon	625614	626798	-	asmbl_36703	none	STRG.28583.3,blat.proc3825162.chain_1825	2	Trinity_GG_15996_c0_g1_i1,blat.proc3825162.chain_1828	2
scaffold_20	skipped_exon	9968528	9969979	+	asmbl_26916	none	STRG.23545.1,Trinity_GG_30309_c0_g1_i2,blat.proc3825176.chain_682	3	STRG.23545.2,blat.proc3825176.chain_681	2
scaffold_17	retained_intron	8319306	8319398	+	asmbl_18970	none	Trinity_GG_28466_c0_g1_i8,blat.proc3825174.chain_1204	2	STRG.20456.1,STRG.20456.2,STRG.20456.3,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1202,blat.proc3825174.chain_1203,blat.proc3825174.chain_1205,blat.proc3825174.chain_1206	12
scaffold_13	alternate_exon	7108380	7108463	+	asmbl_11011	none	STRG.16010.3,Trinity_GG_26113_c0_g1_i10,blat.proc3825172.chain_781	3	STRG.16010.1,STRG.16010.2,blat.proc3825172.chain_778	3
scaffold_17	retained_intron	7047119	7049246	+	asmbl_18888	none	STRG.20370.2,Trinity_GG_28477_c0_g2_i1,Trinity_GG_28477_c1_g1_i1,blat.proc3825174.chain_1230	4	STRG.20370.3,blat.proc3825174.chain_1225,blat.proc3825174.chain_1227	3
scaffold_10	starts_in_intron	926545	926545	-	asmbl_4011	none	Trinity_GG_6668_c0_g1_i3,blat.proc3825154.chain_539	2	STRG.11968.1,Trinity_GG_6668_c0_g1_i1,Trinity_GG_6668_c0_g1_i2,blat.proc3825154.chain_538,blat.proc3825154.chain_540	5
scaffold_5	skipped_exon	2166397	2167500	-	asmbl_43874	none	STRG.5754.1,blat.proc3825150.chain_1989	2	STRG.5754.2,STRG.5754.3	2
scaffold_24	retained_exon	33735	33864	-	asmbl_32686	none	Trinity_GG_14706_c0_g1_i1,blat.proc3825160.chain_3434	2	STRG.26314.5	1
scaffold_21	starts_in_intron	3126244	3126244	-	asmbl_27515	none	STRG.23943.2,blat.proc3825160.chain_1058	2	STRG.23943.3,STRG.23943.4,Trinity_GG_13335_c0_g1_i1,blat.proc3825160.chain_1056,blat.proc3825160.chain_1057,blat.proc3825160.chain_1060	6
scaffold_21	ends_in_intron	395223	395223	-	asmbl_27308	none	Trinity_GG_13226_c0_g1_i5,blat.proc3825160.chain_850	2	STRG.23733.1,STRG.23733.2,Trinity_GG_13226_c0_g1_i1,Trinity_GG_13226_c0_g1_i4,Trinity_GG_13226_c0_g1_i6,blat.proc3825160.chain_849,blat.proc3825160.chain_851,blat.proc3825160.chain_853	8
scaffold_16	retained_exon	7238756	7238917	-	asmbl_17173,asmbl_17175,asmbl_17176,asmbl_17177	none	STRG.19399.1,STRG.19399.2,STRG.19399.3,STRG.19399.4	4	STRG.19399.5,blat.proc3825158.chain_476	2
scaffold_14	starts_in_intron	7521951	7521951	+	asmbl_12173	none	Trinity_GG_26767_c0_g1_i1,blat.proc3825172.chain_1954	2	STRG.17198.1,Trinity_GG_26767_c0_g1_i2,blat.proc3825172.chain_1953	3
scaffold_25	ends_in_intron	5561170	5561170	-	asmbl_34263	none	blat.proc3825162.chain_824	1	STRG.27457.1,STRG.27457.2	2
scaffold_4	starts_in_intron	665779	665779	-	asmbl_42342	none	STRG.4141.2	1	STRG.4141.1,blat.proc3825150.chain_297,blat.proc3825150.chain_298,blat.proc3825150.chain_299	4
scaffold_1	alt_donor	14282795	14282796	-	asmbl_884	none	STRG.1026.2,Trinity_GG_517_c0_g1_i2,blat.proc3825148.chain_979	3	STRG.1026.1,Trinity_GG_517_c0_g1_i1,blat.proc3825148.chain_978	3
scaffold_4	retained_intron	17471150	17471253	-	asmbl_43268	none	STRG.5333.1,Trinity_GG_2942_c0_g1_i2,blat.proc3825150.chain_1439	3	STRG.5333.2,Trinity_GG_2942_c0_g1_i1,blat.proc3825150.chain_1438	3
scaffold_13	retained_exon	15636036	15636176	+	asmbl_11521	none	STRG.16607.3	1	STRG.16607.2	1
scaffold_4	skipped_exon	19443462	19444949	+	asmbl_42148	none	STRG.5532.2	1	STRG.5532.1	1
scaffold_11	retained_intron	13593399	13593726	-	asmbl_7147	none	STRG.14216.1,Trinity_GG_7952_c0_g1_i2,blat.proc3825154.chain_2764	3	blat.proc3825154.chain_2763,blat.proc3825154.chain_2765	2
scaffold_3	starts_in_intron	8211932	8211932	-	asmbl_39024	none	blat.proc3825148.chain_3244	1	STRG.3399.1,STRG.3399.2,blat.proc3825148.chain_3243	3
scaffold_5	spliced_intron	16321133	16321283	+	asmbl_46082	none	STRG.6829.1,blat.proc3825166.chain_3010	2	blat.proc3825166.chain_3012	1
scaffold_3	alt_acceptor	14393543	14393544	+	asmbl_40516	none	STRG.3783.1,Trinity_GG_19433_c0_g1_i1,blat.proc3825166.chain_278	3	STRG.3783.2	1
scaffold_16	starts_in_intron	10107194	10107194	+	asmbl_16519	none	Trinity_GG_28026_c1_g1_i2,blat.proc3825174.chain_482	2	STRG.19593.1,STRG.19593.2,blat.proc3825174.chain_483	3
scaffold_13	retained_intron	7647173	7647583	-	asmbl_9900	none	STRG.16050.1,Trinity_GG_9025_c0_g1_i1,blat.proc3825156.chain_951	3	blat.proc3825156.chain_950	1
scaffold_21	retained_exon	7937551	7937647	-	asmbl_27869	none	STRG.24331.1,blat.proc3825160.chain_1472,blat.proc3825160.chain_1473	3	blat.proc3825160.chain_1469	1
scaffold_19	alt_donor	12207952	12207953	+	asmbl_21762	none	STRG.22551.1,Trinity_GG_29759_c0_g1_i1,blat.proc3825174.chain_3521	3	STRG.22551.3,Trinity_GG_29759_c0_g1_i5,blat.proc3825174.chain_3520	3
scaffold_4	alt_acceptor	14111230	14111231	+	asmbl_41842,asmbl_41843,asmbl_41844,asmbl_41850	none	STRG.5030.1,STRG.5030.2,STRG.5030.3,blat.proc3825166.chain_1415,blat.proc3825166.chain_1416,blat.proc3825166.chain_1418	6	STRG.5030.4,blat.proc3825166.chain_1417	2
scaffold_22	ends_in_intron	505539	505539	-	asmbl_29094,asmbl_29099,asmbl_29100,asmbl_29101	none	STRG.24702.5,Trinity_GG_13790_c0_g1_i15,Trinity_GG_13790_c0_g1_i5,Trinity_GG_13790_c0_g1_i8,Trinity_GG_13790_c0_g1_i9,blat.proc3825160.chain_1860,blat.proc3825160.chain_1861,blat.proc3825160.chain_1863,blat.proc3825160.chain_1866	9	STRG.24702.1,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i4,blat.proc3825160.chain_1865,blat.proc3825160.chain_1867,blat.proc3825160.chain_1869	7
scaffold_2	alt_donor	6211330	6211331	-	asmbl_23183,asmbl_23184	none	STRG.1987.1,STRG.1987.2,blat.proc3825148.chain_1932	3	blat.proc3825148.chain_1933	1
scaffold_12	alt_acceptor	16728958	16728959	-	asmbl_9143	none	STRG.15418.1,Trinity_GG_8621_c0_g1_i1,blat.proc3825156.chain_220	3	STRG.15418.2,Trinity_GG_8621_c0_g1_i5,blat.proc3825156.chain_221	3
scaffold_149	retained_intron	1774	1875	+	asmbl_13898,asmbl_13899	none	STRG.30192.1,STRG.30192.2,Trinity_GG_34029_c0_g1_i1,blat.proc3825178.chain_3305,blat.proc3825178.chain_3306	5	Trinity_GG_34029_c0_g1_i2,blat.proc3825178.chain_3307	2
scaffold_17	alt_acceptor	940074	940075	+	asmbl_18578	none	STRG.19937.2,blat.proc3825174.chain_818	2	STRG.19937.1,STRG.19937.3,blat.proc3825174.chain_819	3
scaffold_3	alt_donor	589531	589532	+	asmbl_39812	none	STRG.2894.1	1	STRG.2894.2,blat.proc3825164.chain_3141	2
scaffold_6	retained_intron	7937253	7937838	-	asmbl_48510,asmbl_48513,asmbl_48514	none	STRG.7676.1,blat.proc3825152.chain_71,blat.proc3825152.chain_72,blat.proc3825152.chain_73	4	STRG.7676.4	1
scaffold_3	retained_intron	5129399	5129745	-	asmbl_38832	none	STRG.3207.1,blat.proc3825148.chain_3035	2	STRG.3207.2,blat.proc3825148.chain_3036	2
scaffold_18	alternate_exon	7507807	7507887	-	asmbl_19945	none	STRG.21452.1	1	STRG.21452.2	1
scaffold_9	retained_intron	13304979	13305210	-	asmbl_55427	none	STRG.11631.3,Trinity_GG_6406_c0_g1_i1,blat.proc3825154.chain_70,blat.proc3825154.chain_71	4	STRG.11631.1,STRG.11631.2,Trinity_GG_6406_c0_g1_i2,blat.proc3825154.chain_72	4
scaffold_14	alt_acceptor	10406889	10406890	+	asmbl_12316	none	STRG.17392.1	1	STRG.17392.2	1
scaffold_13	spliced_intron	5804903	5805414	+	asmbl_10898,asmbl_10899	none	STRG.15896.1,STRG.15896.2	2	blat.proc3825172.chain_706	1
scaffold_6	alt_acceptor	9077366	9077367	+	asmbl_47199	none	STRG.7787.2,blat.proc3825168.chain_273	2	STRG.7787.1,blat.proc3825168.chain_274	2
scaffold_6	alt_donor	13176498	13176499	+	asmbl_47480	none	STRG.8075.3,blat.proc3825168.chain_555	2	STRG.8075.1,STRG.8075.2,blat.proc3825168.chain_556,blat.proc3825168.chain_557	4
scaffold_14	ends_in_intron	15397744	15397744	-	asmbl_13724	none	Trinity_GG_9986_c0_g1_i4,blat.proc3825156.chain_2592	2	STRG.17772.1,STRG.17772.2,blat.proc3825156.chain_2590,blat.proc3825156.chain_2591	4
scaffold_1	retained_exon	20135212	20135301	-	asmbl_1170	none	STRG.1386.5	1	STRG.1386.2,STRG.1386.6	2
scaffold_3	alt_acceptor	3085016	3085017	+	asmbl_39933	none	STRG.3055.1	1	STRG.3055.2	1
scaffold_20	starts_in_intron	4292046	4292046	+	asmbl_26573	none	Trinity_GG_30052_c0_g1_i2,blat.proc3825176.chain_270	2	STRG.23112.1,Trinity_GG_30052_c0_g1_i1,blat.proc3825176.chain_271	3
scaffold_6	alternate_exon	2850935	2851116	-	asmbl_48172	none	STRG.7283.1,blat.proc3825150.chain_3329	2	STRG.7283.2	1
scaffold_1	alt_acceptor	3680405	3680406	+	asmbl_1626,asmbl_1629	none	STRG.242.2,STRG.242.3,blat.proc3825164.chain_367	3	STRG.242.1,blat.proc3825164.chain_370,blat.proc3825164.chain_372	3
scaffold_25	alt_donor	2956328	2956329	-	asmbl_34076	none	blat.proc3825162.chain_581	1	STRG.27245.1,blat.proc3825162.chain_582	2
scaffold_20	retained_intron	10069728	10069888	-	asmbl_26079	none	Trinity_GG_13135_c0_g1_i2,blat.proc3825160.chain_632	2	STRG.23549.1,STRG.23549.2,blat.proc3825160.chain_633,blat.proc3825160.chain_634	4
scaffold_10	spliced_intron	9555114	9555373	+	asmbl_3397,asmbl_3399,asmbl_3402,asmbl_3403,asmbl_3404	none	STRG.12711.1,STRG.12711.2,STRG.12711.3,Trinity_GG_24296_c0_g1_i14,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1284,blat.proc3825170.chain_1286,blat.proc3825170.chain_1287	8	blat.proc3825170.chain_1279	1
scaffold_14	starts_in_intron	11944917	11944917	+	asmbl_12410	none	Trinity_GG_26949_c0_g1_i2,blat.proc3825172.chain_2264	2	STRG.17536.1,Trinity_GG_26949_c0_g1_i1,blat.proc3825172.chain_2263	3
scaffold_11	starts_in_intron	13034545	13034545	-	asmbl_7112	none	blat.proc3825154.chain_2754	1	STRG.14179.1,STRG.14179.2,STRG.14179.3,blat.proc3825154.chain_2755,blat.proc3825154.chain_2756,blat.proc3825154.chain_2757,blat.proc3825154.chain_2758	7
scaffold_16	retained_intron	14663726	14663814	+	asmbl_16703	none	STRG.19866.1,Trinity_GG_28189_c1_g1_i1,blat.proc3825174.chain_751	3	STRG.19866.2,Trinity_GG_28189_c1_g1_i2,blat.proc3825174.chain_752	3
scaffold_2	retained_intron	14503777	14503884	+	asmbl_24940	none	blat.proc3825164.chain_2712	1	STRG.2454.1,blat.proc3825164.chain_2711	2
scaffold_16	alternate_exon	7702319	7702578	-	asmbl_17192	none	STRG.19419.2	1	STRG.19419.1,blat.proc3825158.chain_547,blat.proc3825158.chain_548	3
scaffold_4	spliced_intron	19591639	19591710	-	asmbl_43459	none	blat.proc3825150.chain_1745	1	STRG.5548.1	1
scaffold_3	alt_donor	11455046	11455047	-	asmbl_39165,asmbl_39166	none	STRG.3580.2,blat.proc3825148.chain_3376,blat.proc3825148.chain_3377	3	blat.proc3825148.chain_3378	1
scaffold_1	alt_acceptor	4273766	4273767	+	asmbl_1660	none	STRG.261.3	1	STRG.261.1,STRG.261.2,STRG.261.4,blat.proc3825164.chain_398	4
scaffold_3	alt_acceptor	17696183	17696184	+	asmbl_40689	none	STRG.3991.2,blat.proc3825166.chain_441	2	STRG.3991.1	1
scaffold_23	retained_intron	2151002	2151100	-	asmbl_30697	none	STRG.25684.3,blat.proc3825160.chain_2853	2	STRG.25684.1,STRG.25684.2,blat.proc3825160.chain_2852	3
scaffold_26	retained_exon	5894474	5894601	-	asmbl_35638,asmbl_35639,asmbl_35644	none	STRG.28301.1,STRG.28301.2,blat.proc3825162.chain_1468,blat.proc3825162.chain_1472,blat.proc3825162.chain_1473	5	STRG.28301.3	1
scaffold_6	starts_in_intron	7172496	7172496	+	asmbl_47051,asmbl_47058	none	STRG.7628.5,Trinity_GG_21499_c3_g1_i1,blat.proc3825168.chain_87	3	STRG.7628.1,STRG.7628.2,STRG.7628.4,blat.proc3825168.chain_83,blat.proc3825168.chain_84	5
scaffold_10	ends_in_intron	11596566	11596566	+	asmbl_3482	none	blat.proc3825170.chain_1407	1	STRG.12815.1,STRG.12815.3	2
scaffold_23	alternate_exon	2991546	2992187	-	asmbl_30769,asmbl_30770,asmbl_30771	none	STRG.25748.1,blat.proc3825160.chain_2952,blat.proc3825160.chain_2955	3	STRG.25748.3	1
scaffold_19	starts_in_intron	98200	98200	+	asmbl_21174	none	Trinity_GG_29381_c0_g1_i2,blat.proc3825174.chain_2865	2	STRG.21825.1,blat.proc3825174.chain_2866	2
scaffold_14	starts_in_intron	11447326	11447326	+	asmbl_12377	none	blat.proc3825172.chain_2202	1	STRG.17481.1,blat.proc3825172.chain_2203	2
scaffold_7	retained_intron	5927823	5928006	+	asmbl_49831	none	Trinity_GG_22209_c0_g1_i2,blat.proc3825168.chain_1374	2	STRG.8902.4,blat.proc3825168.chain_1372	2
scaffold_17	alt_acceptor	8355206	8355207	+	asmbl_18987	none	STRG.20457.3,Trinity_GG_28517_c0_g1_i3,blat.proc3825174.chain_1299	3	STRG.20457.1,Trinity_GG_28517_c0_g1_i1,blat.proc3825174.chain_1300	3
scaffold_11	alt_acceptor	11931048	11931049	-	asmbl_7043	none	STRG.14177.3	1	STRG.14177.4	1
scaffold_19	spliced_intron	12242887	12242971	+	asmbl_21767,asmbl_21769	none	STRG.22556.1,blat.proc3825174.chain_3499,blat.proc3825174.chain_3501	3	Trinity_GG_29749_c0_g1_i3,blat.proc3825174.chain_3500	2
scaffold_13	alt_acceptor	396250	396251	-	asmbl_9334,asmbl_9335,asmbl_9337,asmbl_9338,asmbl_9339,asmbl_9345,asmbl_9349,asmbl_9351,asmbl_9352,asmbl_9354	none	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.5,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i3,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_351,blat.proc3825156.chain_354,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_369,blat.proc3825156.chain_370,blat.proc3825156.chain_371	19	STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_364,blat.proc3825156.chain_366	13
scaffold_13	ends_in_intron	14563575	14563575	-	asmbl_10201	none	Trinity_GG_9195_c1_g1_i6,blat.proc3825156.chain_1267	2	STRG.16504.1,STRG.16504.3,STRG.16504.4,STRG.16504.5,blat.proc3825156.chain_1270,blat.proc3825156.chain_1271,blat.proc3825156.chain_1272	7
scaffold_7	alt_acceptor	15247396	15247397	+	asmbl_50420	none	STRG.9540.3,blat.proc3825168.chain_2112	2	STRG.9540.1,STRG.9540.2,blat.proc3825168.chain_2110,blat.proc3825168.chain_2111	4
scaffold_10	starts_in_intron	352808	352808	-	asmbl_3943	none	STRG.11921.1,blat.proc3825154.chain_440	2	STRG.11921.2,blat.proc3825154.chain_438	2
scaffold_9	alt_acceptor	1232208	1232209	+	asmbl_53805	none	STRG.10825.1	1	STRG.10825.2	1
scaffold_5	retained_exon	15703769	15703895	+	asmbl_46010	none	STRG.6765.2	1	STRG.6765.1,blat.proc3825166.chain_2903,blat.proc3825166.chain_2904	3
scaffold_24	starts_in_intron	6075845	6075845	+	asmbl_32284	none	Trinity_GG_32057_c0_g1_i1,blat.proc3825176.chain_3621	2	STRG.26664.1,STRG.26664.2,STRG.26664.3,blat.proc3825176.chain_3622,blat.proc3825176.chain_3623,blat.proc3825176.chain_3624	6
scaffold_19	retained_intron	2785763	2785796	-	asmbl_22066	none	STRG.21965.1,Trinity_GG_12253_c0_g1_i1	2	STRG.21965.2	1
scaffold_2	alternate_exon	3373448	3373615	+	asmbl_24279	none	STRG.1773.2,blat.proc3825164.chain_1895	2	STRG.1773.1,blat.proc3825164.chain_1894	2
scaffold_21	alt_donor	1286083	1286084	-	asmbl_27402	none	STRG.23804.1,Trinity_GG_13269_c0_g1_i1,blat.proc3825160.chain_937	3	STRG.23804.2	1
scaffold_4	retained_exon	16340870	16340994	-	asmbl_43158	none	STRG.5202.1	1	STRG.5202.2	1
scaffold_13	alternate_exon	406893	407045	-	asmbl_9352	none	STRG.15444.1	1	STRG.15444.2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360	7
scaffold_8	alternate_exon	11272628	11272686	+	asmbl_53209	none	STRG.10346.1,Trinity_GG_23069_c0_g1_i1,blat.proc3825168.chain_2911	3	STRG.10346.3,Trinity_GG_23069_c0_g1_i2,blat.proc3825168.chain_2914	3
scaffold_16	alt_acceptor	9572186	9572187	+	asmbl_16497	none	STRG.19557.1	1	Trinity_GG_28028_c0_g1_i1	1
scaffold_14	retained_intron	4116419	4116564	+	asmbl_11971,asmbl_11973	none	STRG.16963.2,STRG.16963.3,Trinity_GG_26646_c0_g1_i1,Trinity_GG_26646_c0_g1_i5,blat.proc3825172.chain_1739,blat.proc3825172.chain_1740	6	STRG.16963.1,Trinity_GG_26646_c0_g1_i3,blat.proc3825172.chain_1741	3
scaffold_12	alt_acceptor	7430810	7430811	+	asmbl_7756,asmbl_7757	none	STRG.14827.1,Trinity_GG_25502_c0_g1_i1,Trinity_GG_25502_c0_g1_i2,blat.proc3825170.chain_3366,blat.proc3825170.chain_3367	5	STRG.14827.2	1
scaffold_13	starts_in_intron	9180457	9180457	-	asmbl_10008	none	blat.proc3825156.chain_1083	1	STRG.16177.1,STRG.16177.2,blat.proc3825156.chain_1084,blat.proc3825156.chain_1086	4
scaffold_9	alt_acceptor	11597409	11597410	-	asmbl_55300	none	STRG.11477.2,blat.proc3825152.chain_3629	2	STRG.11477.1,blat.proc3825152.chain_3628	2
scaffold_7	spliced_intron	12364305	12364430	-	asmbl_51198,asmbl_51200,asmbl_51202,asmbl_51203	none	STRG.9334.1,Trinity_GG_5256_c0_g1_i2,Trinity_GG_5256_c0_g1_i3,blat.proc3825152.chain_1706,blat.proc3825152.chain_1708,blat.proc3825152.chain_1709,blat.proc3825152.chain_1710	7	STRG.9334.2,blat.proc3825152.chain_1707	2
scaffold_2	retained_intron	15271520	15271659	+	asmbl_25015,asmbl_25017	none	blat.proc3825164.chain_2621,blat.proc3825164.chain_2622	2	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619	7
scaffold_13	spliced_intron	2272879	2273221	-	asmbl_9437,asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9	STRG.15548.4,blat.proc3825156.chain_396	2
scaffold_11	retained_intron	3300926	3300997	-	asmbl_6548	none	blat.proc3825154.chain_2007	1	STRG.13460.1,blat.proc3825154.chain_2008	2
scaffold_14	spliced_intron	6553331	6553641	-	asmbl_13140	none	STRG.17104.2	1	STRG.17104.1	1
scaffold_6	skipped_exon	19115049	19115680	-	asmbl_49302,asmbl_49303	none	STRG.8585.4,STRG.8585.5,Trinity_GG_4894_c0_g1_i4	3	STRG.8585.1,STRG.8585.3,Trinity_GG_4894_c0_g1_i1,Trinity_GG_4894_c0_g1_i2,Trinity_GG_4894_c0_g1_i5,blat.proc3825152.chain_1021,blat.proc3825152.chain_1022	7
scaffold_16	spliced_intron	2172434	2173338	+	asmbl_16116	none	blat.proc3825172.chain_3727	1	STRG.19116.1,Trinity_GG_27764_c0_g1_i6,blat.proc3825172.chain_3723,blat.proc3825172.chain_3724	4
scaffold_27	alt_acceptor	4239947	4239948	+	asmbl_36264	none	STRG.28882.2	1	STRG.28882.1,blat.proc3825178.chain_2056	2
scaffold_15	alternate_exon	10880031	10881691	-	asmbl_14460	none	STRG.18571.1,blat.proc3825156.chain_3423	2	STRG.18571.2,Trinity_GG_10429_c1_g1_i1,blat.proc3825156.chain_3424	3
scaffold_8	spliced_intron	16503765	16503928	-	asmbl_52411,asmbl_52414,asmbl_52415,asmbl_52417,asmbl_52418,asmbl_52422	none	STRG.10629.1,STRG.10629.2,blat.proc3825152.chain_2929,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	7	STRG.10629.3,Trinity_GG_5934_c0_g1_i12,Trinity_GG_5934_c0_g1_i21,Trinity_GG_5934_c0_g1_i6,blat.proc3825152.chain_2928,blat.proc3825152.chain_2930,blat.proc3825152.chain_2935,blat.proc3825152.chain_2938	8
scaffold_18	spliced_intron	1886374	1887352	-	asmbl_19655,asmbl_19656,asmbl_19663,asmbl_19664,asmbl_19665	none	STRG.21081.3,STRG.21081.7,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2014	5	STRG.21081.6	1
scaffold_1	starts_in_intron	7269090	7269090	-	asmbl_420	none	blat.proc3825148.chain_506	1	blat.proc3825148.chain_504,blat.proc3825148.chain_507	2
scaffold_17	skipped_exon	8220293	8221539	+	asmbl_18947,asmbl_18952,asmbl_18957,asmbl_18958	none	STRG.20449.1,STRG.20449.2,blat.proc3825174.chain_1239,blat.proc3825174.chain_1242,blat.proc3825174.chain_1248	5	blat.proc3825174.chain_1244,blat.proc3825174.chain_1245	2
scaffold_5	skipped_exon	19029108	19031503	-	asmbl_44884,asmbl_44886	none	STRG.7022.2,STRG.7022.5,blat.proc3825150.chain_3131	3	blat.proc3825150.chain_3133	1
scaffold_17	alternate_exon	1290516	1290765	-	asmbl_17686	none	STRG.19964.3	1	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_972,blat.proc3825158.chain_973,blat.proc3825158.chain_975,blat.proc3825158.chain_976	7
scaffold_19	skipped_exon	12237766	12238160	+	asmbl_21769	none	blat.proc3825174.chain_3499	1	STRG.22556.1,blat.proc3825174.chain_3501	2
scaffold_2	alt_acceptor	17454216	17454217	+	asmbl_25165	none	STRG.2630.1	1	blat.proc3825164.chain_2923	1
scaffold_11	alt_acceptor	8078026	8078027	-	asmbl_6825,asmbl_6827,asmbl_6835	none	STRG.13815.1,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2330,blat.proc3825154.chain_2332	7	STRG.13815.2,STRG.13815.3,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i5,blat.proc3825154.chain_2326,blat.proc3825154.chain_2331	6
scaffold_19	spliced_intron	8232992	8233161	+	asmbl_21502	none	STRG.22282.1,Trinity_GG_29610_c0_g1_i1,blat.proc3825174.chain_3266	3	blat.proc3825174.chain_3265	1
scaffold_9	alt_acceptor	7712183	7712184	-	asmbl_55109	none	STRG.11222.2,Trinity_GG_6212_c0_g1_i3,blat.proc3825152.chain_3458	3	STRG.11222.1,Trinity_GG_6212_c0_g1_i1,blat.proc3825152.chain_3457	3
scaffold_16	starts_in_intron	13217490	13217490	+	asmbl_16658	none	blat.proc3825174.chain_692	1	STRG.19781.1,blat.proc3825174.chain_694,blat.proc3825174.chain_695	3
scaffold_12	spliced_intron	12836971	12837042	-	asmbl_8893	none	STRG.15179.2	1	STRG.15179.1	1
scaffold_23	alternate_exon	7279357	7281830	-	asmbl_31022	none	STRG.26052.1,blat.proc3825160.chain_3144	2	STRG.26052.4,Trinity_GG_14537_c0_g1_i7	2
scaffold_6	starts_in_intron	13948389	13948389	+	asmbl_47553	none	Trinity_GG_21800_c0_g1_i1,blat.proc3825168.chain_654	2	STRG.8147.1,Trinity_GG_21800_c0_g1_i2,blat.proc3825168.chain_655	3
scaffold_28	spliced_intron	9415572	9415730	-	asmbl_38508	none	STRG.29972.1,blat.proc3825162.chain_3155	2	blat.proc3825162.chain_3156	1
scaffold_8	spliced_intron	9465823	9465961	-	asmbl_52035,asmbl_52036,asmbl_52037,asmbl_52039	none	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5	Trinity_GG_5708_c0_g1_i2,blat.proc3825152.chain_2502	2
scaffold_1	alt_acceptor	10410197	10410198	-	asmbl_580,asmbl_582	none	STRG.676.2,blat.proc3825148.chain_693	2	STRG.676.1,blat.proc3825148.chain_694,blat.proc3825148.chain_695	3
scaffold_16	alt_acceptor	291513	291514	+	asmbl_16018	none	blat.proc3825172.chain_3691	1	STRG.19019.1,STRG.19019.2,STRG.19019.3,Trinity_GG_27744_c0_g1_i11,Trinity_GG_27744_c0_g1_i2,blat.proc3825172.chain_3687,blat.proc3825172.chain_3689,blat.proc3825172.chain_3690	8
scaffold_2	alt_donor	8278580	8278581	+	asmbl_24622	none	STRG.2109.2,blat.proc3825164.chain_2285	2	STRG.2109.1,blat.proc3825164.chain_2286	2
scaffold_5	ends_in_intron	4722330	4722330	-	asmbl_44002	none	Trinity_GG_3308_c0_g1_i2,blat.proc3825150.chain_2066	2	STRG.5928.1,blat.proc3825150.chain_2065	2
scaffold_11	spliced_intron	16651862	16652153	+	asmbl_6168	none	STRG.14364.1,blat.proc3825170.chain_2892	2	blat.proc3825170.chain_2890	1
scaffold_5	alt_donor	10582547	10582548	-	asmbl_44370	none	STRG.6345.2	1	STRG.6345.1,blat.proc3825150.chain_2552	2
scaffold_7	retained_exon	1236297	1236502	+	asmbl_49606	none	STRG.8637.5	1	STRG.8637.4,STRG.8637.7,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	5
scaffold_7	alt_acceptor	5183354	5183355	-	asmbl_50874	none	STRG.8855.2,blat.proc3825152.chain_1306	2	STRG.8855.3	1
scaffold_27	retained_exon	145842	145925	-	asmbl_36644	none	Trinity_GG_15968_c0_g1_i2,blat.proc3825162.chain_1769	2	STRG.28551.2	1
scaffold_18	alternate_exon	7241578	7241881	+	asmbl_20728	none	STRG.21430.3,Trinity_GG_29105_c1_g1_i1,blat.proc3825174.chain_2382	3	STRG.21430.2,blat.proc3825174.chain_2381	2
scaffold_25	spliced_intron	4871626	4872194	-	asmbl_34230,asmbl_34235	none	STRG.27422.1,Trinity_GG_15377_c0_g1_i2,blat.proc3825162.chain_778	3	STRG.27422.2,blat.proc3825162.chain_777	2
scaffold_15	alt_donor	11142115	11142116	-	asmbl_14484,asmbl_14485,asmbl_14486,asmbl_14488	none	blat.proc3825156.chain_3382,blat.proc3825156.chain_3383,blat.proc3825156.chain_3384,blat.proc3825156.chain_3386	4	blat.proc3825156.chain_3380	1
scaffold_15	starts_in_intron	5455408	5455408	-	asmbl_14210	none	blat.proc3825156.chain_3107	1	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	6
scaffold_6	starts_in_intron	15764659	15764659	-	asmbl_49081,asmbl_49085	none	STRG.8318.3,blat.proc3825152.chain_759	2	STRG.8318.1,STRG.8318.2,blat.proc3825152.chain_757,blat.proc3825152.chain_758	4
scaffold_21	starts_in_intron	5519497	5519497	-	asmbl_27665	none	blat.proc3825160.chain_1264	1	STRG.24083.1,blat.proc3825160.chain_1261	2
scaffold_10	alternate_exon	10283206	10284583	-	asmbl_4712,asmbl_4716	none	STRG.12719.3,Trinity_GG_7121_c0_g1_i1,blat.proc3825154.chain_1346,blat.proc3825154.chain_1348	4	STRG.12719.2,blat.proc3825154.chain_1345	2
scaffold_5	spliced_intron	11630266	11630428	-	asmbl_44416,asmbl_44420	none	blat.proc3825150.chain_2640,blat.proc3825150.chain_2641	2	blat.proc3825150.chain_2638,blat.proc3825150.chain_2639	2
scaffold_6	alt_acceptor	2902164	2902165	+	asmbl_46782	none	STRG.7291.2	1	STRG.7291.1,STRG.7291.3,STRG.7291.4,blat.proc3825166.chain_3491,blat.proc3825166.chain_3492	5
scaffold_5	retained_exon	3591749	3591793	-	asmbl_43926	none	STRG.5831.5	1	STRG.5831.2,STRG.5831.3,STRG.5831.4,blat.proc3825150.chain_2044,blat.proc3825150.chain_2046	5
scaffold_10	alternate_exon	17008735	17008868	+	asmbl_3738,asmbl_3739	none	STRG.13161.2,STRG.13161.3	2	STRG.13161.1,Trinity_GG_24546_c0_g1_i1,Trinity_GG_24546_c0_g1_i2,blat.proc3825170.chain_1721,blat.proc3825170.chain_1722	5
scaffold_1	alternate_exon	6859849	6859901	-	asmbl_391	none	STRG.485.3,blat.proc3825148.chain_485	2	STRG.485.1,blat.proc3825148.chain_484	2
scaffold_19	retained_intron	1106060	1106189	-	asmbl_22028,asmbl_22032	none	STRG.21903.3,Trinity_GG_12207_c0_g1_i3,blat.proc3825158.chain_2732	3	STRG.21903.1,STRG.21903.2,STRG.21903.4,Trinity_GG_12207_c0_g1_i2,blat.proc3825158.chain_2733	5
scaffold_19	starts_in_intron	3492598	3492598	+	asmbl_21319	none	blat.proc3825174.chain_3055	1	STRG.22030.1,blat.proc3825174.chain_3056	2
scaffold_3	retained_intron	13703667	13704187	+	asmbl_40451	none	blat.proc3825166.chain_220,blat.proc3825166.chain_223	2	STRG.3717.1,STRG.3717.2,STRG.3717.3,STRG.3717.4,Trinity_GG_19399_c0_g1_i2,blat.proc3825166.chain_217,blat.proc3825166.chain_218,blat.proc3825166.chain_219,blat.proc3825166.chain_222	9
scaffold_4	alt_donor	16609395	16609396	-	asmbl_43202	none	STRG.5239.2	1	STRG.5239.1,blat.proc3825150.chain_1422	2
scaffold_12	spliced_intron	1383649	1383801	+	asmbl_7471	none	STRG.14465.1,blat.proc3825170.chain_2967	2	blat.proc3825170.chain_2968	1
scaffold_5	starts_in_intron	4629174	4629174	-	asmbl_43964	none	blat.proc3825150.chain_2106	1	STRG.5917.1,blat.proc3825150.chain_2105	2
scaffold_1	spliced_intron	14357027	14357107	+	asmbl_2387,asmbl_2388	none	STRG.1036.1,STRG.1036.2,blat.proc3825164.chain_1182,blat.proc3825164.chain_1184	4	blat.proc3825164.chain_1183	1
scaffold_10	alternate_exon	15423151	15423390	+	asmbl_3682	none	blat.proc3825170.chain_1660	1	STRG.13060.1	1
scaffold_2	retained_intron	15274237	15274329	+	asmbl_25009,asmbl_25012	none	Trinity_GG_18659_c1_g1_i2,blat.proc3825164.chain_2613,blat.proc3825164.chain_2616	3	STRG.2486.1,blat.proc3825164.chain_2611,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7
scaffold_10	spliced_intron	3062983	3063389	-	asmbl_4154	none	STRG.12127.2,blat.proc3825154.chain_627	2	STRG.12127.1,Trinity_GG_6721_c0_g1_i2,blat.proc3825154.chain_626	3
scaffold_5	retained_exon	12728581	12728691	-	asmbl_44478	none	STRG.6508.2	1	STRG.6508.3	1
scaffold_21	spliced_intron	7420548	7420652	-	asmbl_27807,asmbl_27808,asmbl_27809,asmbl_27810	none	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1445,blat.proc3825160.chain_1446	5	blat.proc3825160.chain_1448	1
scaffold_23	alt_acceptor	7231389	7231390	+	asmbl_31682,asmbl_31684	none	STRG.26051.2,STRG.26051.3	2	STRG.26051.1	1
scaffold_11	retained_intron	4760580	4761026	-	asmbl_6631,asmbl_6632	none	Trinity_GG_7573_c0_g1_i3,blat.proc3825154.chain_2095,blat.proc3825154.chain_2098	3	STRG.13575.1,blat.proc3825154.chain_2096,blat.proc3825154.chain_2097	3
scaffold_15	alt_donor	15339466	15339467	+	asmbl_15750	none	STRG.18918.1,Trinity_GG_27683_c0_g1_i1,blat.proc3825172.chain_3556	3	STRG.18918.2,Trinity_GG_27683_c0_g1_i2,blat.proc3825172.chain_3555	3
scaffold_13	retained_intron	13972082	13972131	+	asmbl_11413	none	Trinity_GG_26313_c1_g1_i1,blat.proc3825172.chain_1174	2	STRG.16448.2	1
scaffold_9	alt_donor	15392624	15392625	+	asmbl_54574	none	Trinity_GG_23876_c0_g1_i4,blat.proc3825170.chain_554	2	STRG.11741.1,Trinity_GG_23876_c0_g1_i3,Trinity_GG_23876_c0_g1_i5,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i7,blat.proc3825170.chain_551,blat.proc3825170.chain_552,blat.proc3825170.chain_553,blat.proc3825170.chain_557	9
scaffold_7	alt_acceptor	12422439	12422440	+	asmbl_50262	none	STRG.9347.3	1	STRG.9347.1,STRG.9347.2,blat.proc3825168.chain_1863,blat.proc3825168.chain_1864	4
scaffold_6	spliced_intron	7174170	7174368	+	asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47057,asmbl_47058,asmbl_47059	none	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84,blat.proc3825168.chain_85	7	blat.proc3825168.chain_82	1
scaffold_10	alt_acceptor	6705951	6705952	-	asmbl_4495	none	blat.proc3825154.chain_1094	1	STRG.12500.1,blat.proc3825154.chain_1093	2
scaffold_1	ends_in_intron	14184233	14184233	+	asmbl_2337	none	blat.proc3825164.chain_1174	1	STRG.1002.1,blat.proc3825164.chain_1173,blat.proc3825164.chain_1175	3
scaffold_9	alt_acceptor	6745769	6745770	-	asmbl_55076	none	STRG.11188.2	1	STRG.11188.1,STRG.11188.3,blat.proc3825152.chain_3414,blat.proc3825152.chain_3416,blat.proc3825152.chain_3417	5
scaffold_20	alt_donor	2844459	2844460	-	asmbl_25678	none	blat.proc3825160.chain_43	1	STRG.23019.1,STRG.23019.4,blat.proc3825160.chain_41,blat.proc3825160.chain_42	4
scaffold_28	alt_donor	33306	33307	+	asmbl_37249,asmbl_37250	none	STRG.29236.1,blat.proc3825178.chain_2455,blat.proc3825178.chain_2456	3	STRG.29236.2,blat.proc3825178.chain_2454	2
scaffold_6	alt_acceptor	6920853	6920854	-	asmbl_48473	none	STRG.7597.1	1	STRG.7597.2,STRG.7597.3,blat.proc3825152.chain_5,blat.proc3825152.chain_6	4
scaffold_3	skipped_exon	1758083	1758974	+	asmbl_39873	none	blat.proc3825164.chain_3239	1	STRG.2993.1,blat.proc3825164.chain_3236,blat.proc3825164.chain_3237,blat.proc3825164.chain_3238,blat.proc3825164.chain_3240	5
scaffold_15	retained_intron	15906139	15906230	-	asmbl_14808	none	Trinity_GG_10636_c0_g1_i3,blat.proc3825158.chain_62	2	STRG.18975.1,STRG.18975.2,blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_64,blat.proc3825158.chain_65,blat.proc3825158.chain_66,blat.proc3825158.chain_67	8
scaffold_11	starts_in_intron	5073112	5073112	-	asmbl_6648	none	blat.proc3825154.chain_2179	1	STRG.13593.1,blat.proc3825154.chain_2180	2
scaffold_24	spliced_intron	8737299	8737413	-	asmbl_33097,asmbl_33099,asmbl_33100,asmbl_33101	none	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_183,blat.proc3825162.chain_184	5	Trinity_GG_15007_c0_g1_i6,blat.proc3825162.chain_185	2
scaffold_3	alternate_exon	11324963	11326594	-	asmbl_39148	none	STRG.3562.1,Trinity_GG_1936_c0_g1_i2,blat.proc3825148.chain_3437	3	STRG.3562.2,Trinity_GG_1936_c0_g1_i3,blat.proc3825148.chain_3439	3
scaffold_19	ends_in_intron	13380072	13380072	-	asmbl_22648	none	Trinity_GG_12624_c0_g1_i1,blat.proc3825158.chain_3506	2	STRG.22668.1,blat.proc3825158.chain_3505	2
scaffold_27	alt_donor	9099524	9099525	+	asmbl_36506	none	blat.proc3825178.chain_2365	1	blat.proc3825178.chain_2363	1
scaffold_9	ends_in_intron	6878591	6878591	+	asmbl_54108	none	Trinity_GG_23560_c1_g1_i1,blat.proc3825168.chain_3745	2	STRG.11200.1,blat.proc3825168.chain_3743	2
scaffold_18	ends_in_intron	240091	240091	-	asmbl_19571	none	Trinity_GG_11757_c0_g1_i4	1	STRG.20979.1,STRG.20979.2,blat.proc3825158.chain_1923,blat.proc3825158.chain_1925	4
scaffold_2	alternate_exon	20313282	20313307	+	asmbl_25322	none	STRG.2877.4	1	STRG.2877.1,Trinity_GG_18936_c0_g1_i2,blat.proc3825164.chain_3115	3
scaffold_2	alt_acceptor	168570	168571	+	asmbl_24082	none	STRG.1522.2	1	STRG.1522.1,blat.proc3825164.chain_1668,blat.proc3825164.chain_1669,blat.proc3825164.chain_1671	4
scaffold_8	skipped_exon	9696519	9698018	+	asmbl_53099	none	STRG.10217.1,blat.proc3825168.chain_2768	2	STRG.10217.2,STRG.10217.3,blat.proc3825168.chain_2769	3
scaffold_6	alternate_exon	14137962	14139851	+	asmbl_47583	none	STRG.8176.1,blat.proc3825168.chain_667	2	STRG.8176.2	1
scaffold_11	skipped_exon	4859568	4861210	+	asmbl_5531	none	STRG.13583.1	1	STRG.13583.2,Trinity_GG_24778_c1_g1_i1,blat.proc3825170.chain_2110	3
scaffold_12	spliced_intron	10341771	10341927	-	asmbl_8744	none	STRG.15008.1,blat.proc3825154.chain_3523	2	STRG.15008.2,blat.proc3825154.chain_3524	2
scaffold_8	skipped_exon	13256225	13256725	+	asmbl_53350	none	STRG.10515.1,blat.proc3825168.chain_2952	2	STRG.10515.2,blat.proc3825168.chain_2953	2
scaffold_8	spliced_intron	13133136	13133848	-	asmbl_52267	none	blat.proc3825152.chain_2749	1	STRG.10488.2,blat.proc3825152.chain_2750,blat.proc3825152.chain_2751	3
scaffold_1	alternate_exon	20757070	20757999	+	asmbl_2651	none	STRG.1422.1,blat.proc3825164.chain_1498	2	STRG.1422.2,blat.proc3825164.chain_1495,blat.proc3825164.chain_1496	3
scaffold_12	spliced_intron	11324172	11324264	+	asmbl_7959	none	STRG.15068.1,Trinity_GG_25617_c0_g1_i2,blat.proc3825170.chain_3585	3	STRG.15068.2,Trinity_GG_25617_c0_g1_i1,blat.proc3825170.chain_3584	3
scaffold_21	alternate_exon	1756164	1757862	-	asmbl_27423	none	blat.proc3825160.chain_962	1	STRG.23823.3	1
scaffold_20	ends_in_intron	3905924	3905924	-	asmbl_25710	none	Trinity_GG_12887_c0_g1_i2	1	STRG.23085.1	1
scaffold_5	retained_intron	11630266	11630428	-	asmbl_44415,asmbl_44419	none	blat.proc3825150.chain_2638,blat.proc3825150.chain_2639	2	blat.proc3825150.chain_2640,blat.proc3825150.chain_2641	2
scaffold_11	retained_intron	4756244	4756446	+	asmbl_5521	none	blat.proc3825170.chain_2117	1	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2116	3
scaffold_26	alt_acceptor	7544983	7544984	+	asmbl_35124	none	Trinity_GG_33002_c0_g1_i1,blat.proc3825178.chain_1474	2	STRG.28388.1	1
scaffold_17	alt_acceptor	4693419	4693420	+	asmbl_18791	none	STRG.20208.2	1	STRG.20208.1	1
scaffold_15	alternate_exon	8591366	8591484	+	asmbl_15336	none	STRG.18405.1,blat.proc3825172.chain_3062	2	STRG.18405.2	1
scaffold_17	alt_acceptor	7832634	7832635	-	asmbl_18059	none	STRG.20409.2,blat.proc3825158.chain_1447	2	STRG.20409.1,blat.proc3825158.chain_1446	2
scaffold_14	retained_intron	3244204	3244521	+	asmbl_11928,asmbl_11931	none	STRG.16923.2,Trinity_GG_26577_c0_g1_i1,blat.proc3825172.chain_1620,blat.proc3825172.chain_1621	4	STRG.16923.1,blat.proc3825172.chain_1617,blat.proc3825172.chain_1622	3
scaffold_8	alternate_exon	14404876	14404915	-	asmbl_52314	none	STRG.10529.2	1	STRG.10529.1,blat.proc3825152.chain_2648,blat.proc3825152.chain_2649	3
scaffold_3	alt_donor	11455066	11455067	-	asmbl_39167	none	blat.proc3825148.chain_3378	1	STRG.3580.2,blat.proc3825148.chain_3376,blat.proc3825148.chain_3377	3
scaffold_13	retained_intron	8022246	8022334	-	asmbl_9933	none	STRG.16086.1,blat.proc3825156.chain_881	2	STRG.16086.2,blat.proc3825156.chain_880	2
scaffold_9	alt_donor	12009125	12009126	+	asmbl_54403	none	STRG.11526.1,Trinity_GG_23760_c0_g1_i1,blat.proc3825170.chain_358	3	STRG.11526.2,Trinity_GG_23760_c3_g1_i1,blat.proc3825170.chain_361	3
scaffold_24	alt_acceptor	5940482	5940483	+	asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32263,asmbl_32267,asmbl_32268,asmbl_32271,asmbl_32272,asmbl_32273,asmbl_32274,asmbl_32275,asmbl_32276	none	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3669,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	14	Trinity_GG_32084_c0_g1_i2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3665,blat.proc3825176.chain_3670,blat.proc3825176.chain_3672,blat.proc3825176.chain_3680	6
scaffold_21	alternate_exon	6393408	6401453	+	asmbl_28632	none	STRG.24166.1,blat.proc3825176.chain_1282	2	STRG.24166.2,Trinity_GG_30650_c4_g1_i1,blat.proc3825176.chain_1285	3
scaffold_17	retained_intron	14097321	14097576	-	asmbl_18409	none	blat.proc3825158.chain_1843	1	STRG.20898.1,blat.proc3825158.chain_1841,blat.proc3825158.chain_1842	3
scaffold_25	retained_intron	6253628	6253853	+	asmbl_33603,asmbl_33604,asmbl_33605	none	Trinity_GG_32481_c0_g1_i2,Trinity_GG_32481_c0_g1_i5,blat.proc3825178.chain_623,blat.proc3825178.chain_624,blat.proc3825178.chain_625,blat.proc3825178.chain_627	6	STRG.27510.1,blat.proc3825178.chain_626	2
scaffold_8	starts_in_intron	11851757	11851757	+	asmbl_53289	none	blat.proc3825168.chain_3013	1	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3015,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	9
scaffold_21	starts_in_intron	3173702	3173702	+	asmbl_28473	none	blat.proc3825176.chain_1143	1	STRG.23959.1,STRG.23959.2,STRG.23959.3,STRG.23959.4,STRG.23959.5,STRG.23959.7,blat.proc3825176.chain_1132,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1136,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	14
scaffold_14	ends_in_intron	1374732	1374732	-	asmbl_12878	none	blat.proc3825156.chain_1625	1	STRG.16791.1,STRG.16791.2,blat.proc3825156.chain_1624	3
scaffold_8	starts_in_intron	17954199	17954199	-	asmbl_52495	none	blat.proc3825152.chain_2961	1	STRG.10705.1,blat.proc3825152.chain_2960	2
scaffold_11	alt_acceptor	17070081	17070082	-	asmbl_7240,asmbl_7242	none	STRG.14371.1,STRG.14371.3,blat.proc3825154.chain_2803,blat.proc3825154.chain_2805	4	STRG.14371.2,blat.proc3825154.chain_2806	2
scaffold_2	spliced_intron	8055440	8055585	-	asmbl_23303	none	STRG.2094.2,blat.proc3825148.chain_2119	2	STRG.2094.4,blat.proc3825148.chain_2118	2
scaffold_5	alt_acceptor	12829480	12829481	-	asmbl_44487,asmbl_44488	none	STRG.6515.1,STRG.6515.2,blat.proc3825150.chain_2692,blat.proc3825150.chain_2693	4	STRG.6515.3	1
scaffold_4	ends_in_intron	16718494	16718494	-	asmbl_43207	none	STRG.5250.3	1	STRG.5250.2,blat.proc3825150.chain_1375	2
scaffold_12	spliced_intron	5039289	5039416	-	asmbl_8473,asmbl_8474	none	STRG.14681.1,STRG.14681.2,blat.proc3825154.chain_3105	3	blat.proc3825154.chain_3106	1
scaffold_2	spliced_intron	15805763	15805856	-	asmbl_23660	none	STRG.2529.1	1	Trinity_GG_1390_c0_g1_i2,blat.proc3825148.chain_2492	2
scaffold_19	spliced_intron	3309537	3309592	-	asmbl_22100	none	STRG.22021.2	1	STRG.22021.1,Trinity_GG_12290_c0_g1_i1,blat.proc3825158.chain_2861	3
scaffold_11	alternate_exon	6249974	6258655	+	asmbl_5621,asmbl_5625	none	STRG.13692.1,STRG.13692.2,blat.proc3825170.chain_2239	3	STRG.13692.5	1
scaffold_19	starts_in_intron	6446390	6446390	+	asmbl_21415	none	blat.proc3825174.chain_3175	1	STRG.22170.1	1
scaffold_1	retained_intron	11173731	11174990	+	asmbl_2079,asmbl_2084,asmbl_2086	none	STRG.747.1,blat.proc3825164.chain_909,blat.proc3825164.chain_913,blat.proc3825164.chain_915	4	STRG.747.3,blat.proc3825164.chain_914	2
scaffold_17	retained_intron	14325639	14325766	-	asmbl_18423	none	blat.proc3825158.chain_1884	1	STRG.20906.1,blat.proc3825158.chain_1885	2
scaffold_16	alt_acceptor	4096599	4096600	+	asmbl_16175	none	blat.proc3825174.chain_61	1	STRG.19226.1,STRG.19226.2	2
scaffold_3	retained_intron	10628351	10628697	+	asmbl_40280,asmbl_40281,asmbl_40288	none	blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3688	3	STRG.3513.2,STRG.3513.4,blat.proc3825164.chain_3683,blat.proc3825164.chain_3687	4
scaffold_7	ends_in_intron	16139262	16139262	-	asmbl_51404	none	blat.proc3825152.chain_1924	1	STRG.9577.1,blat.proc3825152.chain_1925	2
scaffold_5	retained_intron	19371162	19371247	-	asmbl_44906	none	STRG.7039.2,Trinity_GG_3919_c0_g1_i3,blat.proc3825150.chain_3149	3	STRG.7039.1,STRG.7039.3,Trinity_GG_3919_c0_g1_i1,blat.proc3825150.chain_3148	4
scaffold_19	alt_acceptor	11472687	11472688	-	asmbl_22396	none	STRG.22481.1,blat.proc3825158.chain_3258	2	STRG.22481.2,STRG.22481.4,blat.proc3825158.chain_3256,blat.proc3825158.chain_3257	4
scaffold_4	spliced_intron	4113774	4113870	-	asmbl_42487	none	blat.proc3825150.chain_479	1	blat.proc3825150.chain_480	1
scaffold_24	spliced_intron	9952112	9952301	-	asmbl_33154,asmbl_33157,asmbl_33158	none	STRG.26968.1,Trinity_GG_15063_c0_g1_i3,blat.proc3825162.chain_274,blat.proc3825162.chain_275	4	STRG.26968.2,STRG.26968.6,STRG.26968.8,Trinity_GG_15063_c0_g1_i6,blat.proc3825162.chain_269,blat.proc3825162.chain_273	6
scaffold_10	alt_acceptor	9465714	9465715	+	asmbl_3383	none	STRG.12689.2	1	STRG.12689.1,blat.proc3825170.chain_1237	2
scaffold_27	alternate_exon	2880372	2881195	+	asmbl_36146	none	blat.proc3825178.chain_1938	1	blat.proc3825178.chain_1942	1
scaffold_12	spliced_intron	7422596	7422854	-	asmbl_8585	none	STRG.14825.3,blat.proc3825154.chain_3337	2	STRG.14825.1,blat.proc3825154.chain_3339,blat.proc3825154.chain_3340,blat.proc3825154.chain_3341	4
scaffold_5	alternate_exon	2601797	2608996	+	asmbl_45188	none	STRG.5788.1,blat.proc3825166.chain_2012	2	STRG.5788.2,Trinity_GG_20472_c1_g1_i1,blat.proc3825166.chain_2015	3
scaffold_7	starts_in_intron	13813383	13813383	+	asmbl_50379	none	Trinity_GG_22587_c0_g1_i1	1	STRG.9488.5	1
scaffold_10	starts_in_intron	14550692	14550692	-	asmbl_4948	none	blat.proc3825154.chain_1620	1	STRG.13004.1,blat.proc3825154.chain_1619	2
scaffold_3	alt_donor	19886382	19886383	-	asmbl_39671,asmbl_39674	none	STRG.4100.1,STRG.4100.4,Trinity_GG_2243_c1_g1_i1,blat.proc3825150.chain_246	4	blat.proc3825150.chain_249	1
scaffold_8	skipped_exon	11718423	11719070	-	asmbl_52158	none	STRG.10370.1,blat.proc3825152.chain_2601	2	STRG.10370.2	1
scaffold_19	alt_acceptor	1612526	1612527	+	asmbl_21248,asmbl_21250	none	STRG.21916.1,Trinity_GG_29432_c0_g1_i3,blat.proc3825174.chain_2957,blat.proc3825174.chain_2959	4	STRG.21916.2,blat.proc3825174.chain_2958	2
scaffold_20	alternate_exon	3259996	3260134	+	asmbl_26528	none	STRG.23056.3	1	STRG.23056.1,blat.proc3825176.chain_218	2
scaffold_16	starts_in_intron	13018032	13018032	-	asmbl_17399	none	STRG.19763.1,blat.proc3825158.chain_754	2	STRG.19763.2	1
scaffold_19	starts_in_intron	11460862	11460862	-	asmbl_22388,asmbl_22389	none	blat.proc3825158.chain_3199,blat.proc3825158.chain_3200	2	STRG.22479.1,blat.proc3825158.chain_3198,blat.proc3825158.chain_3201	3
scaffold_22	alt_acceptor	498065	498066	+	asmbl_29859	none	STRG.24697.3	1	STRG.24697.1	1
scaffold_1	spliced_intron	854652	854820	+	asmbl_1428	none	STRG.43.1	1	STRG.43.2,STRG.43.3,STRG.43.4,Trinity_GG_17353_c0_g1_i1,Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142,blat.proc3825164.chain_147	7
scaffold_7	retained_exon	15599004	15599072	+	asmbl_50452	none	blat.proc3825168.chain_2060	1	blat.proc3825168.chain_2058,blat.proc3825168.chain_2059	2
scaffold_6	alt_acceptor	9077391	9077392	+	asmbl_47200	none	STRG.7787.1,blat.proc3825168.chain_274	2	STRG.7787.2,blat.proc3825168.chain_273	2
scaffold_19	starts_in_intron	678654	678654	+	asmbl_21201	none	Trinity_GG_29401_c0_g1_i4,blat.proc3825174.chain_2898	2	STRG.21850.1,blat.proc3825174.chain_2897,blat.proc3825174.chain_2900	3
scaffold_4	alt_acceptor	11075490	11075491	+	asmbl_41699	none	STRG.4828.2,Trinity_GG_20019_c0_g1_i2,blat.proc3825166.chain_1287	3	STRG.4828.1,Trinity_GG_20019_c0_g1_i1,blat.proc3825166.chain_1286	3
scaffold_7	alternate_exon	6187912	6188065	+	asmbl_49845,asmbl_49846	none	STRG.8912.1,blat.proc3825168.chain_1408,blat.proc3825168.chain_1409,blat.proc3825168.chain_1410	4	STRG.8912.2,Trinity_GG_22230_c0_g1_i1,Trinity_GG_22230_c0_g1_i2,Trinity_GG_22230_c0_g1_i3	4
scaffold_3	ends_in_intron	17341466	17341466	+	asmbl_40668	none	blat.proc3825166.chain_469	1	STRG.3963.1,blat.proc3825166.chain_470	2
scaffold_13	alternate_exon	9341673	9341850	+	asmbl_11197	none	STRG.16202.2	1	STRG.16202.1,Trinity_GG_26202_c0_g1_i1,blat.proc3825172.chain_962	3
scaffold_15	spliced_intron	389347	389455	+	asmbl_14968,asmbl_14969,asmbl_14971	none	STRG.17895.1,STRG.17895.2,blat.proc3825172.chain_2619,blat.proc3825172.chain_2622,blat.proc3825172.chain_2623,blat.proc3825172.chain_2625	6	blat.proc3825172.chain_2620,blat.proc3825172.chain_2621	2
scaffold_9	alt_acceptor	4198648	4198649	+	asmbl_53938	none	blat.proc3825168.chain_3532	1	STRG.11022.1,STRG.11022.2,blat.proc3825168.chain_3533	3
scaffold_11	starts_in_intron	16530687	16530687	+	asmbl_6159	none	blat.proc3825170.chain_2858	1	STRG.14343.1,STRG.14343.2,blat.proc3825170.chain_2857	3
scaffold_5	spliced_intron	10132156	10132315	+	asmbl_45656	none	STRG.6309.1,Trinity_GG_20746_c0_g1_i2,blat.proc3825166.chain_2507	3	Trinity_GG_20746_c0_g1_i1,blat.proc3825166.chain_2506	2
scaffold_5	skipped_exon	17224836	17226346	+	asmbl_46151	none	blat.proc3825166.chain_3077	1	STRG.6896.1,blat.proc3825166.chain_3076	2
scaffold_15	alt_acceptor	15242085	15242086	-	asmbl_14763	none	STRG.18908.1,Trinity_GG_10627_c0_g1_i2,blat.proc3825158.chain_35	3	STRG.18908.2	1
scaffold_21	alt_acceptor	9866314	9866315	-	asmbl_27976	none	STRG.24445.2	1	STRG.24445.3	1
scaffold_16	alt_acceptor	673470	673471	+	asmbl_16032,asmbl_16033,asmbl_16034	none	STRG.19045.3,STRG.19045.4,STRG.19045.5,Trinity_GG_27750_c0_g1_i3,Trinity_GG_27750_c0_g1_i4,Trinity_GG_27750_c0_g1_i5,blat.proc3825172.chain_3698,blat.proc3825172.chain_3699,blat.proc3825172.chain_3700	9	STRG.19045.1,STRG.19045.2,Trinity_GG_27750_c0_g1_i2,blat.proc3825172.chain_3697,blat.proc3825172.chain_3701	5
scaffold_9	skipped_exon	11542871	11543302	+	asmbl_54356	none	Trinity_GG_23714_c0_g1_i1,blat.proc3825170.chain_295	2	STRG.11471.1,STRG.11471.2,STRG.11471.3,Trinity_GG_23714_c0_g1_i2,blat.proc3825170.chain_296	5
scaffold_25	ends_in_intron	4578082	4578082	+	asmbl_33522,asmbl_33523	none	Trinity_GG_32430_c0_g1_i1,Trinity_GG_32430_c0_g1_i6,blat.proc3825178.chain_529,blat.proc3825178.chain_532	4	STRG.27395.1,STRG.27395.2,STRG.27395.3,Trinity_GG_32430_c0_g1_i4,Trinity_GG_32430_c0_g1_i5,Trinity_GG_32430_c0_g1_i9,blat.proc3825178.chain_528,blat.proc3825178.chain_531,blat.proc3825178.chain_533	9
scaffold_6	skipped_exon	17847263	17848256	+	asmbl_47791	none	STRG.8474.1	1	blat.proc3825168.chain_931	1
scaffold_18	retained_intron	8913428	8913585	-	asmbl_20042,asmbl_20044,asmbl_20045,asmbl_20050,asmbl_20053	none	STRG.21558.3,STRG.21558.4,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2447,blat.proc3825158.chain_2451,blat.proc3825158.chain_2453	7	STRG.21558.6,STRG.21558.7,blat.proc3825158.chain_2449	3
scaffold_1	retained_exon	6830890	6831526	-	asmbl_384	none	STRG.474.1,blat.proc3825148.chain_465	2	STRG.474.3	1
scaffold_18	alternate_exon	8883251	8883319	-	asmbl_20040	none	STRG.21551.2	1	STRG.21551.1,STRG.21551.3,blat.proc3825158.chain_2468,blat.proc3825158.chain_2471	4
scaffold_27	spliced_intron	1551570	1551779	+	asmbl_36020,asmbl_36023,asmbl_36025	none	STRG.28642.1,STRG.28642.2,STRG.28642.3,Trinity_GG_33147_c0_g1_i4,blat.proc3825178.chain_1740,blat.proc3825178.chain_1742	6	blat.proc3825178.chain_1744	1
scaffold_15	alt_acceptor	9483596	9483597	-	asmbl_14380	none	STRG.18464.2,Trinity_GG_10381_c0_g1_i1,blat.proc3825156.chain_3348	3	STRG.18464.1	1
scaffold_6	alt_acceptor	3521042	3521043	+	asmbl_46848	none	STRG.7362.1	1	STRG.7362.2	1
scaffold_18	ends_in_intron	2833208	2833208	+	asmbl_20423	none	blat.proc3825174.chain_2057	1	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2052,blat.proc3825174.chain_2056	5
scaffold_20	spliced_intron	7857888	7858063	-	asmbl_25931,asmbl_25932,asmbl_25933	none	STRG.23336.1,STRG.23336.2,STRG.23336.3,blat.proc3825160.chain_416,blat.proc3825160.chain_417	5	STRG.23336.4,blat.proc3825160.chain_415	2
scaffold_6	alternate_exon	2844585	2844641	-	asmbl_48170	none	blat.proc3825150.chain_3370	1	STRG.7282.2,STRG.7282.3,blat.proc3825150.chain_3368	3
scaffold_8	alt_acceptor	9155634	9155635	-	asmbl_52014	none	STRG.10176.1,blat.proc3825152.chain_2440	2	Trinity_GG_5678_c0_g1_i2,blat.proc3825152.chain_2441	2
scaffold_1	alternate_exon	18742037	18742061	-	asmbl_1126	none	STRG.1306.1	1	STRG.1306.2	1
scaffold_19	retained_intron	12107159	12107555	-	asmbl_22458	none	STRG.22539.3,blat.proc3825158.chain_3193	2	STRG.22539.4	1
scaffold_2	alt_acceptor	4900238	4900239	-	asmbl_23113	none	STRG.1910.2	1	STRG.1910.1,blat.proc3825148.chain_1896	2
scaffold_11	starts_in_intron	8431404	8431404	+	asmbl_5771,asmbl_5773	none	STRG.13861.3,Trinity_GG_24892_c0_g2_i2,Trinity_GG_24892_c0_g2_i4,blat.proc3825170.chain_2302,blat.proc3825170.chain_2303	5	STRG.13861.1,Trinity_GG_24892_c0_g2_i1,blat.proc3825170.chain_2305	3
scaffold_17	retained_exon	2357645	2358219	+	asmbl_18637,asmbl_18643	none	STRG.20030.1,blat.proc3825174.chain_907,blat.proc3825174.chain_909	3	STRG.20030.4,STRG.20030.6	2
scaffold_5	starts_in_intron	10970931	10970931	+	asmbl_45715	none	Trinity_GG_20790_c1_g1_i4,blat.proc3825166.chain_2591	2	STRG.6375.1,STRG.6375.2,blat.proc3825166.chain_2592,blat.proc3825166.chain_2593,blat.proc3825166.chain_2594	5
scaffold_14	ends_in_intron	1591725	1591725	-	asmbl_12901,asmbl_12902	none	Trinity_GG_16450_c0_g1_i1,Trinity_GG_16450_c0_g1_i2	2	STRG.16799.1,STRG.16799.2,STRG.16799.3,STRG.16799.4,blat.proc3825156.chain_1564,blat.proc3825156.chain_1565,blat.proc3825156.chain_1566	7
scaffold_14	alternate_exon	2373119	2379388	-	asmbl_12941	none	STRG.16854.2,Trinity_GG_9462_c2_g1_i1,blat.proc3825156.chain_1718	3	STRG.16854.10	1
scaffold_1	spliced_intron	3493880	3494497	-	asmbl_146,asmbl_147,asmbl_148,asmbl_150,asmbl_151,asmbl_152	none	STRG.221.1,STRG.221.2,STRG.221.4,blat.proc3825148.chain_213,blat.proc3825148.chain_215,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_218,blat.proc3825148.chain_220	9	STRG.221.3,blat.proc3825148.chain_214,blat.proc3825148.chain_219,blat.proc3825148.chain_221	4
scaffold_12	starts_in_intron	15050703	15050703	+	asmbl_8109	none	blat.proc3825172.chain_30	1	STRG.15307.1,blat.proc3825172.chain_29	2
scaffold_28	alternate_exon	7776183	7776231	-	asmbl_38414	none	STRG.29851.1,blat.proc3825162.chain_3008	2	STRG.29851.2,blat.proc3825162.chain_3007	2
scaffold_4	ends_in_intron	6940347	6940347	+	asmbl_41437	none	blat.proc3825166.chain_916	1	STRG.4536.1,blat.proc3825166.chain_914,blat.proc3825166.chain_915	3
scaffold_25	starts_in_intron	7803781	7803781	-	asmbl_34407	none	blat.proc3825162.chain_946	1	STRG.27602.1,blat.proc3825162.chain_948	2
scaffold_2	alt_donor	2995488	2995489	-	asmbl_22953	none	STRG.1746.3	1	STRG.1746.1,STRG.1746.2	2
scaffold_7	spliced_intron	7493241	7494424	-	asmbl_50942	none	STRG.9005.2	1	STRG.9005.1,blat.proc3825152.chain_1413	2
scaffold_18	spliced_intron	281385	282108	+	asmbl_20288	none	STRG.20984.1,blat.proc3825174.chain_1903	2	STRG.20984.3,Trinity_GG_28852_c1_g1_i1,blat.proc3825174.chain_1904	3
scaffold_11	spliced_intron	12071585	12071767	-	asmbl_7073	none	STRG.14130.2,Trinity_GG_7851_c1_g1_i2	2	Trinity_GG_7851_c1_g1_i3,blat.proc3825154.chain_2576	2
scaffold_12	skipped_exon	7617899	7618496	-	asmbl_8603,asmbl_8604,asmbl_8606,asmbl_8608	none	STRG.14840.1,STRG.14840.4,STRG.14840.5,blat.proc3825154.chain_3358,blat.proc3825154.chain_3359	5	STRG.14840.2,STRG.14840.3,STRG.14840.6	3
scaffold_24	ends_in_intron	5331189	5331189	-	asmbl_32901	none	blat.proc3825162.chain_12	1	STRG.26625.1,blat.proc3825162.chain_14,blat.proc3825162.chain_15	3
scaffold_19	spliced_intron	8872484	8872914	-	asmbl_22315	none	STRG.22342.1,blat.proc3825158.chain_3145	2	blat.proc3825158.chain_3146	1
scaffold_23	ends_in_intron	7714633	7714633	+	asmbl_31727,asmbl_31729	none	STRG.26088.1,STRG.26088.2,blat.proc3825176.chain_3036	3	blat.proc3825176.chain_3037	1
scaffold_20	alt_acceptor	11538020	11538021	+	asmbl_27073	none	STRG.23659.1	1	STRG.23659.2	1
scaffold_13	alt_acceptor	2357503	2357504	+	asmbl_10595,asmbl_10604,asmbl_10605	none	STRG.15564.11,STRG.15564.2,STRG.15564.5	3	STRG.15564.12	1
scaffold_17	alt_donor	13610630	13610631	+	asmbl_19339	none	STRG.20835.2	1	STRG.20835.1	1
scaffold_10	alt_acceptor	1621529	1621530	+	asmbl_2949	none	STRG.12026.1,Trinity_GG_23966_c0_g1_i3,Trinity_GG_23966_c0_g1_i7,Trinity_GG_23966_c0_g1_i8,blat.proc3825170.chain_714,blat.proc3825170.chain_715,blat.proc3825170.chain_717	7	STRG.12026.2,STRG.12026.3,STRG.12026.4,STRG.12026.5,STRG.12026.6,Trinity_GG_23966_c0_g1_i4,Trinity_GG_23966_c0_g1_i9,blat.proc3825170.chain_713,blat.proc3825170.chain_716	9
scaffold_12	retained_exon	10003911	10004093	-	asmbl_8713,asmbl_8715	none	STRG.14976.2,STRG.14976.3,blat.proc3825154.chain_3480	3	STRG.14976.1	1
scaffold_16	starts_in_intron	434672	434672	-	asmbl_16877	none	blat.proc3825158.chain_204	1	STRG.19041.1,STRG.19041.2,STRG.19041.3,blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_201,blat.proc3825158.chain_202,blat.proc3825158.chain_203	8
scaffold_20	spliced_intron	11682548	11683305	-	asmbl_26183	none	STRG.23680.2,blat.proc3825160.chain_764	2	STRG.23680.1	1
scaffold_5	alt_acceptor	5045217	5045218	+	asmbl_45329	none	STRG.5958.3	1	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126,blat.proc3825166.chain_2127	5
scaffold_8	alternate_exon	16503929	16512893	-	asmbl_52415	none	blat.proc3825152.chain_2932	1	STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2934,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	5
scaffold_11	starts_in_intron	8078944	8078944	-	asmbl_6831	none	blat.proc3825154.chain_2329	1	STRG.13815.1,STRG.13815.2,STRG.13815.3,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i8,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2326,blat.proc3825154.chain_2328,blat.proc3825154.chain_2330,blat.proc3825154.chain_2332,blat.proc3825154.chain_2333	15
scaffold_1	spliced_intron	5739516	5739656	+	asmbl_1775,asmbl_1776,asmbl_1777,asmbl_1778,asmbl_1779,asmbl_1781,asmbl_1782	none	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_525,blat.proc3825164.chain_528,blat.proc3825164.chain_529,blat.proc3825164.chain_530	7	blat.proc3825164.chain_526	1
scaffold_20	starts_in_intron	11592978	11592978	-	asmbl_26163	none	Trinity_GG_13164_c0_g3_i1,blat.proc3825160.chain_704	2	STRG.23678.1,STRG.23678.2	2
scaffold_10	starts_in_intron	13460887	13460887	+	asmbl_3605	none	blat.proc3825170.chain_1472	1	STRG.12937.1,blat.proc3825170.chain_1473	2
scaffold_12	skipped_exon	4558127	4560176	-	asmbl_8402	none	blat.proc3825154.chain_3109	1	STRG.14631.1,blat.proc3825154.chain_3107	2
scaffold_11	retained_intron	6254831	6256304	+	asmbl_5619	none	STRG.13692.4,Trinity_GG_24860_c0_g1_i7,blat.proc3825170.chain_2238,blat.proc3825170.chain_2241	4	STRG.13692.1,STRG.13692.2,blat.proc3825170.chain_2239,blat.proc3825170.chain_2242	4
scaffold_28	retained_exon	539546	539623	-	asmbl_37909	none	STRG.29277.1,blat.proc3825162.chain_2442	2	STRG.29277.2,STRG.29277.3,blat.proc3825162.chain_2443	3
scaffold_4	starts_in_intron	6575027	6575027	+	asmbl_41412	none	Trinity_GG_19812_c0_g1_i3,blat.proc3825166.chain_968	2	STRG.4515.1,blat.proc3825166.chain_966,blat.proc3825166.chain_967	3
scaffold_1	ends_in_intron	3167959	3167959	+	asmbl_1576	none	blat.proc3825164.chain_234	1	STRG.201.1,blat.proc3825164.chain_235	2
scaffold_8	ends_in_intron	11256495	11256495	+	asmbl_53207	none	STRG.10335.2,Trinity_GG_23066_c0_g1_i2,blat.proc3825168.chain_2907	3	STRG.10335.1,Trinity_GG_23066_c0_g1_i1,blat.proc3825168.chain_2908	3
scaffold_17	starts_in_intron	11958820	11958820	-	asmbl_18305	none	STRG.20722.4,blat.proc3825158.chain_1750	2	STRG.20722.1,STRG.20722.2,STRG.20722.3,STRG.20722.5,blat.proc3825158.chain_1749,blat.proc3825158.chain_1751,blat.proc3825158.chain_1752	7
scaffold_15	starts_in_intron	13253382	13253382	+	asmbl_15621	none	blat.proc3825172.chain_3416	1	STRG.18766.1,blat.proc3825172.chain_3415	2
scaffold_5	retained_intron	11991739	11993287	-	asmbl_44435	none	blat.proc3825150.chain_2615	1	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3
scaffold_9	skipped_exon	9614148	9615590	-	asmbl_55219	none	STRG.11330.2	1	STRG.11330.3,blat.proc3825152.chain_3606	2
scaffold_9	ends_in_intron	15495990	15495990	-	asmbl_55534	none	STRG.11747.4,blat.proc3825154.chain_216	2	STRG.11747.1,STRG.11747.3,blat.proc3825154.chain_215,blat.proc3825154.chain_218	4
scaffold_14	alternate_exon	14147748	14148583	+	asmbl_12526	none	STRG.17687.4	1	STRG.17687.1	1
scaffold_20	ends_in_intron	10468973	10468973	-	asmbl_26104	none	blat.proc3825160.chain_641	1	STRG.23584.1,blat.proc3825160.chain_639,blat.proc3825160.chain_640	3
scaffold_18	starts_in_intron	7661698	7661698	+	asmbl_20769,asmbl_20770	none	Trinity_GG_29183_c0_g1_i11,Trinity_GG_29183_c0_g1_i7	2	STRG.21471.1,STRG.21471.2,STRG.21471.3,STRG.21471.4,STRG.21471.5,STRG.21471.6	6
scaffold_6	starts_in_intron	16292594	16292594	-	asmbl_49112	none	blat.proc3825152.chain_792	1	STRG.8352.1,STRG.8352.2,blat.proc3825152.chain_790,blat.proc3825152.chain_791	4
scaffold_11	retained_intron	1982041	1982111	-	asmbl_6460,asmbl_6461	none	STRG.13359.1,STRG.13359.2,blat.proc3825154.chain_1934	3	STRG.13359.3,blat.proc3825154.chain_1935	2
scaffold_13	spliced_intron	3529047	3529149	+	asmbl_10701,asmbl_10702,asmbl_10703,asmbl_10705	none	STRG.15676.1,STRG.15676.2,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_363	5	blat.proc3825172.chain_364	1
scaffold_2	alternate_exon	17465286	17465335	+	asmbl_25171	none	blat.proc3825164.chain_2886	1	STRG.2632.1,blat.proc3825164.chain_2885	2
scaffold_1	spliced_intron	4864390	4864489	-	asmbl_218	none	STRG.292.2,blat.proc3825148.chain_256	2	STRG.292.1,blat.proc3825148.chain_258	2
scaffold_7	retained_exon	8302921	8302957	+	asmbl_49985	none	blat.proc3825168.chain_1572	1	STRG.9064.1,blat.proc3825168.chain_1571	2
scaffold_18	retained_intron	7943320	7944087	-	asmbl_19986	none	Trinity_GG_12022_c0_g1_i2,blat.proc3825158.chain_2408	2	STRG.21493.2	1
scaffold_13	starts_in_intron	4378429	4378429	+	asmbl_10784	none	Trinity_GG_25973_c0_g1_i3,blat.proc3825172.chain_501	2	STRG.15764.1,STRG.15764.2,STRG.15764.3,STRG.15764.4,STRG.15764.5	5
scaffold_26	skipped_exon	4141796	4142563	+	asmbl_34873	none	STRG.28122.4	1	STRG.28122.1,STRG.28122.2,STRG.28122.3	3
scaffold_11	spliced_intron	10981902	10982289	-	asmbl_7010	none	STRG.14062.3	1	STRG.14062.1,Trinity_GG_7857_c0_g1_i1,blat.proc3825154.chain_2608	3
scaffold_15	spliced_intron	12000050	12000366	-	asmbl_14546	none	STRG.18639.6,Trinity_GG_10485_c0_g1_i6,blat.proc3825156.chain_3529	3	STRG.18639.2,STRG.18639.4,blat.proc3825156.chain_3533	3
scaffold_9	spliced_intron	571057	571248	+	asmbl_53772	none	STRG.10788.3	1	STRG.10788.4	1
scaffold_13	spliced_intron	398875	400049	-	asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9352,asmbl_9354	none	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24	Trinity_GG_8688_c0_g2_i1,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_367,blat.proc3825156.chain_368,blat.proc3825156.chain_369,blat.proc3825156.chain_370	7
scaffold_5	retained_intron	4948983	4949120	+	asmbl_45318,asmbl_45319	none	STRG.5954.2,STRG.5954.3	2	STRG.5954.4	1
scaffold_19	spliced_intron	2348182	2348361	+	asmbl_21262	none	STRG.21948.2,blat.proc3825174.chain_2973	2	STRG.21948.1,blat.proc3825174.chain_2974	2
scaffold_20	retained_exon	11672272	11672377	-	asmbl_26171,asmbl_26176	none	STRG.23670.3,blat.proc3825160.chain_749,blat.proc3825160.chain_750	3	STRG.23670.2,blat.proc3825160.chain_751	2
scaffold_11	spliced_intron	17095575	17095790	+	asmbl_6194	none	STRG.14376.3,blat.proc3825170.chain_2933	2	STRG.14376.1,STRG.14376.2,blat.proc3825170.chain_2934	3
scaffold_17	retained_intron	9029724	9030391	-	asmbl_18138	none	Trinity_GG_11556_c0_g1_i5,blat.proc3825158.chain_1574	2	STRG.20532.1,STRG.20532.2,STRG.20532.4,STRG.20532.5,blat.proc3825158.chain_1576	5
scaffold_8	spliced_intron	11848560	11850658	+	asmbl_53280,asmbl_53281,asmbl_53283	none	blat.proc3825168.chain_3019,blat.proc3825168.chain_3023,blat.proc3825168.chain_3025,blat.proc3825168.chain_3027	4	STRG.10390.2,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	3
scaffold_10	starts_in_intron	11489768	11489768	+	asmbl_3463	none	Trinity_GG_24377_c0_g1_i2,blat.proc3825170.chain_1412	2	STRG.12802.1	1
scaffold_18	alt_acceptor	7875869	7875870	+	asmbl_20810,asmbl_20811,asmbl_20812,asmbl_20815	none	STRG.21491.1,STRG.21491.3,STRG.21491.4,STRG.21491.5,blat.proc3825174.chain_2468,blat.proc3825174.chain_2470,blat.proc3825174.chain_2472	7	STRG.21491.2,blat.proc3825174.chain_2469,blat.proc3825174.chain_2471	3
scaffold_21	starts_in_intron	11272908	11272908	-	asmbl_28117	none	blat.proc3825160.chain_1826	1	STRG.24607.1,STRG.24607.2,STRG.24607.4,blat.proc3825160.chain_1823,blat.proc3825160.chain_1827,blat.proc3825160.chain_1829	6
scaffold_5	alt_acceptor	5045423	5045424	+	asmbl_45327	none	STRG.5958.2,blat.proc3825166.chain_2127,blat.proc3825166.chain_2129	3	STRG.5958.1,STRG.5958.3,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126	4
scaffold_27	ends_in_intron	145657	145657	-	asmbl_36643	none	STRG.28551.3,Trinity_GG_15968_c0_g1_i5,blat.proc3825162.chain_1771	3	Trinity_GG_15968_c0_g1_i2,blat.proc3825162.chain_1769	2
scaffold_2	skipped_exon	3347885	3348812	-	asmbl_22973	none	STRG.1776.2	1	STRG.1776.1	1
scaffold_3	spliced_intron	14177620	14177901	-	asmbl_39324	none	STRG.3752.2,blat.proc3825148.chain_3634	2	STRG.3752.1,Trinity_GG_2054_c0_g1_i2,blat.proc3825148.chain_3635	3
scaffold_18	starts_in_intron	7682359	7682359	+	asmbl_20774,asmbl_20780	none	Trinity_GG_29179_c0_g1_i14,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2515,blat.proc3825174.chain_2516	4	STRG.21474.1,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	5
scaffold_14	retained_intron	3161368	3162176	+	asmbl_11915,asmbl_11916,asmbl_11922,asmbl_11923,asmbl_11924	none	Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	7	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i4,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	7
scaffold_12	alt_acceptor	6420482	6420483	+	asmbl_7680,asmbl_7681,asmbl_7682,asmbl_7683,asmbl_7684	none	STRG.14753.1,STRG.14753.2,STRG.14753.3,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274,blat.proc3825170.chain_3275	6	blat.proc3825170.chain_3272	1
scaffold_9	alt_donor	66933	66934	+	asmbl_53747	none	STRG.10765.1	1	STRG.10765.2,blat.proc3825168.chain_3292	2
scaffold_17	alternate_exon	5070791	5070822	+	asmbl_18806	none	STRG.20234.3	1	STRG.20234.1,STRG.20234.2,STRG.20234.4,STRG.20234.5,Trinity_GG_28366_c0_g1_i1,Trinity_GG_28366_c0_g1_i2,blat.proc3825174.chain_1045,blat.proc3825174.chain_1046	8
scaffold_11	alt_acceptor	8399331	8399332	+	asmbl_5764,asmbl_5766	none	STRG.13857.1,blat.proc3825170.chain_2390,blat.proc3825170.chain_2392	3	STRG.13857.2,Trinity_GG_24940_c0_g1_i11,blat.proc3825170.chain_2391,blat.proc3825170.chain_2393,blat.proc3825170.chain_2397	5
scaffold_15	alternate_exon	15857503	15857571	+	asmbl_15827	none	blat.proc3825172.chain_3572	1	STRG.18973.3,Trinity_GG_27688_c0_g1_i12,blat.proc3825172.chain_3569	3
scaffold_2	alt_acceptor	6510561	6510562	-	asmbl_23209,asmbl_23210	none	STRG.2013.2,blat.proc3825148.chain_2017	2	STRG.2013.1,STRG.2013.3,blat.proc3825148.chain_2016	3
scaffold_12	alternate_exon	9230630	9230828	-	asmbl_8660	none	STRG.14924.2	1	STRG.14924.1,blat.proc3825154.chain_3389	2
scaffold_8	starts_in_intron	11065575	11065575	-	asmbl_52127	none	STRG.10322.1,Trinity_GG_5751_c1_g1_i1,blat.proc3825152.chain_2575	3	STRG.10322.2,blat.proc3825152.chain_2574	2
scaffold_24	ends_in_intron	6825516	6825516	+	asmbl_32351	none	blat.proc3825176.chain_3735	1	STRG.26736.1,STRG.26736.2,STRG.26736.3,STRG.26736.4	4
scaffold_13	alternate_exon	11599669	11599898	+	asmbl_11285,asmbl_11286,asmbl_11290	none	STRG.16316.4,STRG.16316.5,STRG.16316.6	3	STRG.16316.1,STRG.16316.3,blat.proc3825172.chain_1028,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034	6
scaffold_10	spliced_intron	2668615	2668805	+	asmbl_2986,asmbl_2988	none	STRG.12087.1,STRG.12087.2,blat.proc3825170.chain_843	3	blat.proc3825170.chain_844	1
scaffold_6	retained_exon	12520880	12521077	-	asmbl_48814	none	STRG.8011.1,blat.proc3825152.chain_397	2	STRG.8011.3	1
scaffold_24	retained_intron	6310450	6310978	+	asmbl_32303	none	blat.proc3825176.chain_3579	1	STRG.26696.1,STRG.26696.2,blat.proc3825176.chain_3580,blat.proc3825176.chain_3581	4
scaffold_10	retained_intron	761892	761975	-	asmbl_4006	none	Trinity_GG_6663_c0_g1_i2,blat.proc3825154.chain_530	2	STRG.11960.1,STRG.11960.2,Trinity_GG_6663_c0_g1_i1,Trinity_GG_6663_c0_g1_i3,blat.proc3825154.chain_531,blat.proc3825154.chain_532	6
scaffold_9	skipped_exon	7748473	7750937	+	asmbl_54132	none	blat.proc3825170.chain_30	1	STRG.11223.1,Trinity_GG_23582_c1_g1_i3,blat.proc3825170.chain_28,blat.proc3825170.chain_29,blat.proc3825170.chain_31	5
scaffold_10	alt_acceptor	759695	759696	-	asmbl_4002	none	STRG.11959.1,blat.proc3825154.chain_529	2	STRG.11959.2	1
scaffold_22	skipped_exon	685999	686536	+	asmbl_29877	none	STRG.24720.2,Trinity_GG_30975_c0_g1_i2,blat.proc3825176.chain_1839	3	STRG.24720.1,Trinity_GG_30975_c0_g1_i1,blat.proc3825176.chain_1840	3
scaffold_17	alt_acceptor	2561590	2561591	-	asmbl_17766	none	STRG.20056.1	1	STRG.20056.2	1
scaffold_20	spliced_intron	10986544	10986914	+	asmbl_27004	none	STRG.23622.1,Trinity_GG_30383_c0_g1_i2,blat.proc3825176.chain_809	3	Trinity_GG_30383_c0_g1_i1,blat.proc3825176.chain_810	2
scaffold_20	alt_donor	10057056	10057057	-	asmbl_26076	none	STRG.23552.1,blat.proc3825160.chain_624	2	STRG.23552.2,blat.proc3825160.chain_625	2
scaffold_11	spliced_intron	11785562	11785678	+	asmbl_5999	none	STRG.14099.1	1	STRG.14099.3	1
scaffold_7	starts_in_intron	5234726	5234726	+	asmbl_49797	none	STRG.8866.2,Trinity_GG_22206_c1_g1_i1,blat.proc3825168.chain_1367	3	STRG.8866.1,blat.proc3825168.chain_1364,blat.proc3825168.chain_1366	3
scaffold_25	spliced_intron	5827048	5827724	-	asmbl_34289,asmbl_34292	none	STRG.27479.3,blat.proc3825162.chain_878	2	blat.proc3825162.chain_874,blat.proc3825162.chain_881	2
scaffold_9	alternate_exon	12115250	12115358	+	asmbl_54408	none	STRG.11537.4,Trinity_GG_23763_c0_g1_i1,blat.proc3825170.chain_365	3	STRG.11537.3	1
scaffold_16	retained_exon	13948691	13948919	-	asmbl_17418	none	STRG.19792.1,blat.proc3825158.chain_831	2	STRG.19792.2	1
scaffold_16	starts_in_intron	10085966	10085966	+	asmbl_16515	none	Trinity_GG_28061_c0_g1_i2,blat.proc3825174.chain_544	2	Trinity_GG_28061_c0_g1_i3,Trinity_GG_28061_c0_g1_i4,blat.proc3825174.chain_542,blat.proc3825174.chain_543	4
scaffold_24	spliced_intron	8749383	8749460	-	asmbl_33105	none	STRG.26892.1	1	blat.proc3825162.chain_242,blat.proc3825162.chain_243,blat.proc3825162.chain_244,blat.proc3825162.chain_245	4
scaffold_2	skipped_exon	3898325	3899364	+	asmbl_24321	none	blat.proc3825164.chain_2001	1	STRG.1826.2,blat.proc3825164.chain_2000	2
scaffold_9	retained_intron	11877608	11877697	+	asmbl_54390	none	STRG.11511.1,blat.proc3825170.chain_334	2	STRG.11511.2	1
scaffold_4	retained_intron	17964335	17964393	-	asmbl_43336	none	STRG.5397.1	1	blat.proc3825150.chain_1549	1
scaffold_14	alt_acceptor	15517155	15517156	-	asmbl_13729	none	STRG.17792.3	1	STRG.17792.2	1
scaffold_27	alternate_exon	1778936	1778987	-	asmbl_36787	none	STRG.28666.1,blat.proc3825162.chain_1924	2	STRG.28666.2,blat.proc3825162.chain_1925	2
scaffold_9	starts_in_intron	15495851	15495851	-	asmbl_55532	none	STRG.11747.2	1	STRG.11747.1,blat.proc3825154.chain_215	2
scaffold_19	starts_in_intron	11485159	11485159	-	asmbl_22407,asmbl_22408	none	Trinity_GG_12512_c0_g1_i13,Trinity_GG_12512_c0_g1_i4,blat.proc3825158.chain_3239,blat.proc3825158.chain_3240	4	STRG.22486.1,STRG.22486.2,blat.proc3825158.chain_3241,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3248	6
scaffold_11	spliced_intron	17376092	17376187	+	asmbl_6220,asmbl_6223,asmbl_6224,asmbl_6225	none	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2881,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	5	Trinity_GG_25216_c0_g1_i4,blat.proc3825170.chain_2880	2
scaffold_6	alternate_exon	3054520	3055243	+	asmbl_46801,asmbl_46805	none	STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3522	3	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4
scaffold_19	starts_in_intron	684589	684589	-	asmbl_21994	none	blat.proc3825158.chain_2699	1	STRG.21851.1,Trinity_GG_12189_c2_g1_i3,blat.proc3825158.chain_2697,blat.proc3825158.chain_2698	4
scaffold_19	alt_donor	10224647	10224648	+	asmbl_21631	none	blat.proc3825174.chain_3298	1	STRG.22402.1,STRG.22402.2,STRG.22402.3,blat.proc3825174.chain_3299	4
scaffold_17	retained_intron	8303687	8303849	-	asmbl_18086	none	STRG.20446.2	1	STRG.20446.1,blat.proc3825158.chain_1502,blat.proc3825158.chain_1503	3
scaffold_12	alt_acceptor	3803784	3803785	+	asmbl_7573	none	STRG.14588.3,blat.proc3825170.chain_3154	2	STRG.14588.2	1
scaffold_20	retained_intron	4562562	4562796	+	asmbl_26596	none	Trinity_GG_30047_c0_g1_i1,blat.proc3825176.chain_265	2	STRG.23135.1,Trinity_GG_30047_c0_g1_i2,blat.proc3825176.chain_264	3
scaffold_28	ends_in_intron	2908095	2908095	-	asmbl_38105	none	Trinity_GG_16493_c0_g1_i3	1	STRG.29486.1,STRG.29486.2	2
scaffold_8	starts_in_intron	9819403	9819403	+	asmbl_53110	none	STRG.10229.4	1	STRG.10229.2,blat.proc3825168.chain_2785	2
scaffold_27	starts_in_intron	129165	129165	-	asmbl_36636,asmbl_36640	none	Trinity_GG_15985_c0_g1_i6,Trinity_GG_15985_c0_g1_i8,blat.proc3825162.chain_1802,blat.proc3825162.chain_1803	4	STRG.28543.2,STRG.28543.3,Trinity_GG_15985_c0_g1_i5,blat.proc3825162.chain_1801	4
scaffold_8	retained_intron	16501765	16501850	-	asmbl_52410,asmbl_52414	none	Trinity_GG_5934_c0_g1_i14,blat.proc3825152.chain_2927,blat.proc3825152.chain_2933	3	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2928,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939,blat.proc3825152.chain_2941	13
scaffold_28	retained_intron	4440911	4440975	-	asmbl_38208	none	STRG.29625.1,blat.proc3825162.chain_2822	2	STRG.29625.2	1
scaffold_4	starts_in_intron	17500730	17500730	-	asmbl_43280	none	Trinity_GG_2970_c0_g1_i3	1	STRG.5337.1,STRG.5337.2,blat.proc3825150.chain_1492,blat.proc3825150.chain_1494	4
scaffold_15	alternate_exon	3398055	3398342	-	asmbl_14099,asmbl_14100	none	STRG.18121.3,STRG.18121.4	2	STRG.18121.1,blat.proc3825156.chain_2975,blat.proc3825156.chain_2976	3
scaffold_3	spliced_intron	14259583	14259877	+	asmbl_40504	none	STRG.3766.2,blat.proc3825166.chain_254	2	STRG.3766.1,Trinity_GG_19418_c0_g1_i1,blat.proc3825166.chain_252,blat.proc3825166.chain_253	4
scaffold_23	alternate_exon	2414458	2415278	+	asmbl_31403	none	STRG.25716.1,Trinity_GG_31508_c0_g1_i1,blat.proc3825176.chain_2676	3	STRG.25716.4,blat.proc3825176.chain_2677	2
scaffold_21	alternate_exon	1758526	1759301	-	asmbl_27419	none	STRG.23823.2,Trinity_GG_13284_c3_g1_i1,blat.proc3825160.chain_966	3	blat.proc3825160.chain_962	1
scaffold_8	spliced_intron	9112241	9112368	-	asmbl_52000,asmbl_52001	none	STRG.10169.1,STRG.10169.2,blat.proc3825152.chain_2372	3	blat.proc3825152.chain_2371	1
scaffold_7	alt_acceptor	12053882	12053883	+	asmbl_50205,asmbl_50209	none	STRG.9309.1,STRG.9309.2,blat.proc3825168.chain_1831	3	Trinity_GG_22477_c0_g1_i4,blat.proc3825168.chain_1830	2
scaffold_14	retained_intron	405268	405492	+	asmbl_11747,asmbl_11751	none	STRG.16734.1,STRG.16734.6,Trinity_GG_26526_c0_g1_i5,Trinity_GG_26526_c0_g1_i6,blat.proc3825172.chain_1510,blat.proc3825172.chain_1513	6	STRG.16734.5,blat.proc3825172.chain_1515,blat.proc3825172.chain_1516	3
scaffold_26	alternate_exon	4818080	4818399	+	asmbl_34927	none	STRG.28202.1,blat.proc3825178.chain_1220	2	STRG.28202.2,blat.proc3825178.chain_1221	2
scaffold_11	alt_acceptor	15631601	15631602	+	asmbl_6116,asmbl_6117,asmbl_6119	none	STRG.14299.1,STRG.14299.2,blat.proc3825170.chain_2833,blat.proc3825170.chain_2834	4	blat.proc3825170.chain_2835	1
scaffold_4	retained_intron	4104938	4105082	+	asmbl_41230	none	STRG.4316.1	1	STRG.4316.2	1
scaffold_17	alt_donor	6959837	6959838	-	asmbl_18010	none	STRG.20355.1,blat.proc3825158.chain_1399	2	STRG.20355.2,blat.proc3825158.chain_1400	2
scaffold_22	alternate_exon	6951181	6951217	+	asmbl_30142	none	STRG.25014.1,blat.proc3825176.chain_2139	2	STRG.25014.2,blat.proc3825176.chain_2140	2
scaffold_2	spliced_intron	17708369	17708455	-	asmbl_23738,asmbl_23741	none	STRG.2662.1,STRG.2662.2,blat.proc3825148.chain_2601	3	STRG.2662.3,blat.proc3825148.chain_2600	2
scaffold_14	starts_in_intron	8222206	8222206	+	asmbl_12208	none	Trinity_GG_26813_c1_g2_i1,blat.proc3825172.chain_2035	2	STRG.17237.1,blat.proc3825172.chain_2036	2
scaffold_4	starts_in_intron	13117028	13117028	-	asmbl_42975	none	blat.proc3825150.chain_1132	1	STRG.4949.1,blat.proc3825150.chain_1133	2
scaffold_11	starts_in_intron	11794138	11794138	-	asmbl_7032	none	blat.proc3825154.chain_2645	1	STRG.14109.1,blat.proc3825154.chain_2644	2
scaffold_28	retained_intron	9808981	9809004	+	asmbl_37810	none	STRG.30007.1,Trinity_GG_33922_c0_g1_i1,blat.proc3825178.chain_3143	3	STRG.30007.2	1
scaffold_23	alt_acceptor	806140	806141	-	asmbl_30610	none	STRG.25583.3	1	STRG.25583.1,STRG.25583.2,blat.proc3825160.chain_2754	3
scaffold_23	spliced_intron	10977777	10977923	+	asmbl_31898,asmbl_31900,asmbl_31901,asmbl_31902,asmbl_31904,asmbl_31905	none	STRG.26307.1,STRG.26307.2,blat.proc3825176.chain_3177,blat.proc3825176.chain_3178,blat.proc3825176.chain_3181,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	7	STRG.26307.4,Trinity_GG_31796_c0_g1_i6,blat.proc3825176.chain_3179,blat.proc3825176.chain_3182	4
scaffold_12	alt_acceptor	13063870	13063871	-	asmbl_8914	none	STRG.15193.2	1	STRG.15193.1,Trinity_GG_8492_c0_g1_i1,blat.proc3825154.chain_3705	3
scaffold_20	starts_in_intron	1435734	1435734	-	asmbl_25563	none	Trinity_GG_12730_c0_g1_i4,blat.proc3825158.chain_3663	2	STRG.22863.1,STRG.22863.2	2
scaffold_6	starts_in_intron	13355931	13355931	-	asmbl_48910	none	blat.proc3825152.chain_510	1	STRG.8094.1,STRG.8094.2,blat.proc3825152.chain_508,blat.proc3825152.chain_509	4
scaffold_8	ends_in_intron	16546095	16546095	-	asmbl_52426,asmbl_52427	none	STRG.10633.2,Trinity_GG_5917_c0_g1_i1,blat.proc3825152.chain_2895,blat.proc3825152.chain_2896	4	STRG.10633.1,blat.proc3825152.chain_2897	2
scaffold_2	starts_in_intron	7936545	7936545	+	asmbl_24598,asmbl_24602,asmbl_24603,asmbl_24604	none	Trinity_GG_18487_c0_g1_i2,Trinity_GG_18487_c0_g1_i6,Trinity_GG_18487_c0_g1_i7,Trinity_GG_18487_c0_g1_i9,blat.proc3825164.chain_2245,blat.proc3825164.chain_2246,blat.proc3825164.chain_2247,blat.proc3825164.chain_2250	8	STRG.2090.1,Trinity_GG_18487_c0_g2_i1,blat.proc3825164.chain_2251	3
scaffold_19	retained_intron	678886	678974	+	asmbl_21201	none	Trinity_GG_29401_c0_g1_i4,blat.proc3825174.chain_2898	2	blat.proc3825174.chain_2897	1
scaffold_5	alternate_exon	7978658	7978754	-	asmbl_44194	none	STRG.6171.2	1	STRG.6171.1,blat.proc3825150.chain_2284	2
scaffold_17	spliced_intron	3035297	3035419	-	asmbl_17794	none	blat.proc3825158.chain_1098	1	STRG.20095.1,Trinity_GG_11256_c0_g1_i1,blat.proc3825158.chain_1099	3
scaffold_10	starts_in_intron	13546868	13546868	-	asmbl_4907	none	blat.proc3825154.chain_1576	1	STRG.12954.1,blat.proc3825154.chain_1574	2
scaffold_17	spliced_intron	6976792	6976967	-	asmbl_18014,asmbl_18015	none	STRG.20360.1,STRG.20360.2,blat.proc3825158.chain_1412,blat.proc3825158.chain_1413	4	blat.proc3825158.chain_1411	1
scaffold_7	spliced_intron	5235519	5236725	+	asmbl_49798,asmbl_49803	none	STRG.8866.1,blat.proc3825168.chain_1365,blat.proc3825168.chain_1366	3	STRG.8866.2,blat.proc3825168.chain_1363	2
scaffold_6	starts_in_intron	17492876	17492876	+	asmbl_47758	none	blat.proc3825168.chain_857	1	STRG.8447.1,Trinity_GG_21929_c0_g1_i1,blat.proc3825168.chain_858	3
scaffold_18	spliced_intron	11297253	11297345	-	asmbl_20130	none	STRG.21674.1,blat.proc3825158.chain_2568	2	STRG.21674.2,Trinity_GG_12116_c0_g1_i4,blat.proc3825158.chain_2566,blat.proc3825158.chain_2567	4
scaffold_25	skipped_exon	3630560	3632886	+	asmbl_33438	none	STRG.27312.3,blat.proc3825178.chain_431	2	STRG.27312.1,STRG.27312.2,blat.proc3825178.chain_426,blat.proc3825178.chain_427,blat.proc3825178.chain_429,blat.proc3825178.chain_432	6
scaffold_26	starts_in_intron	5891047	5891047	+	asmbl_35054	none	STRG.28300.3	1	STRG.28300.1,blat.proc3825178.chain_1387,blat.proc3825178.chain_1388	3
scaffold_14	spliced_intron	3159934	3160025	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11922	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	14	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	4
scaffold_2	alt_donor	14193797	14193798	-	asmbl_23568	none	STRG.2416.3	1	STRG.2416.2,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	4
scaffold_8	spliced_intron	9872480	9872652	-	asmbl_52059	none	STRG.10234.2	1	blat.proc3825152.chain_2491	1
scaffold_14	retained_intron	6582351	6582780	+	asmbl_12088	none	STRG.17108.1,blat.proc3825172.chain_1780	2	STRG.17108.2,blat.proc3825172.chain_1777	2
scaffold_2	spliced_intron	10719654	10719730	+	asmbl_24724	none	STRG.2241.1,Trinity_GG_18572_c0_g1_i5,blat.proc3825164.chain_2426	3	STRG.2241.2,Trinity_GG_18572_c0_g1_i1,blat.proc3825164.chain_2427	3
scaffold_20	spliced_intron	10452937	10453051	-	asmbl_26099	none	STRG.23588.1,Trinity_GG_13117_c0_g1_i1,blat.proc3825160.chain_598	3	Trinity_GG_13117_c0_g1_i2,blat.proc3825160.chain_599	2
scaffold_10	alt_acceptor	9427896	9427897	-	asmbl_4694	none	STRG.12685.1,blat.proc3825154.chain_1303	2	STRG.12685.2	1
scaffold_5	spliced_intron	11434446	11434524	-	asmbl_44407	none	STRG.6406.1,blat.proc3825150.chain_2568	2	blat.proc3825150.chain_2567	1
scaffold_2	alt_acceptor	4787952	4787953	+	asmbl_24381	none	STRG.1899.3,blat.proc3825164.chain_2022	2	STRG.1899.2	1
scaffold_2	spliced_intron	15273247	15273404	+	asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2621	5	blat.proc3825164.chain_2619	1
scaffold_14	retained_intron	10479149	10479549	+	asmbl_12321	none	STRG.17398.2,blat.proc3825172.chain_2141	2	STRG.17398.1,blat.proc3825172.chain_2142	2
scaffold_13	alternate_exon	8803187	8803283	-	asmbl_9987	none	blat.proc3825156.chain_1066	1	STRG.16153.4,Trinity_GG_9086_c0_g1_i7,blat.proc3825156.chain_1065,blat.proc3825156.chain_1067,blat.proc3825156.chain_1069,blat.proc3825156.chain_1070	6
scaffold_22	spliced_intron	6127007	6127298	+	asmbl_30096,asmbl_30097,asmbl_30102,asmbl_30107	none	STRG.24968.1,STRG.24968.4,Trinity_GG_31147_c1_g1_i1,Trinity_GG_31147_c1_g1_i7,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2125,blat.proc3825176.chain_2128,blat.proc3825176.chain_2130,blat.proc3825176.chain_2132	9	blat.proc3825176.chain_2129	1
scaffold_4	alt_donor	5279441	5279442	-	asmbl_42589,asmbl_42590,asmbl_42591	none	STRG.4425.1,STRG.4425.3,blat.proc3825150.chain_681	3	STRG.4425.2,blat.proc3825150.chain_680	2
scaffold_10	ends_in_intron	1418852	1418852	+	asmbl_2927	none	STRG.12012.1,blat.proc3825170.chain_754	2	STRG.12012.2	1
scaffold_25	retained_exon	9119662	9119772	+	asmbl_33782	none	STRG.27725.5	1	STRG.27725.3,STRG.27725.4,STRG.27725.6	3
scaffold_2	retained_intron	19884108	19884202	-	asmbl_23876	none	blat.proc3825148.chain_2776	1	STRG.2835.1,blat.proc3825148.chain_2777	2
scaffold_21	retained_intron	7008589	7008751	-	asmbl_27773	none	blat.proc3825160.chain_1390	1	STRG.24233.1,STRG.24233.2,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393,blat.proc3825160.chain_1394,blat.proc3825160.chain_1395	6
scaffold_22	alt_donor	6927246	6927247	-	asmbl_29346	none	STRG.25011.1,blat.proc3825160.chain_2101	2	STRG.25011.2,blat.proc3825160.chain_2100	2
scaffold_27	skipped_exon	9989075	9989784	+	asmbl_36556	none	STRG.29230.2	1	STRG.29230.1,Trinity_GG_33511_c0_g1_i1,blat.proc3825178.chain_2425	3
scaffold_17	starts_in_intron	6181644	6181644	-	asmbl_17971	none	STRG.20293.2	1	STRG.20293.1,STRG.20293.3	2
scaffold_12	retained_exon	2928444	2928560	-	asmbl_8333	none	STRG.14526.3	1	STRG.14526.1	1
scaffold_27	alt_donor	9995071	9995072	+	asmbl_36558	none	STRG.29231.2,blat.proc3825178.chain_2433	2	STRG.29231.1	1
scaffold_18	alt_acceptor	3915401	3915402	-	asmbl_19787	none	STRG.21203.1	1	STRG.21203.2,STRG.21203.3,STRG.21203.4,STRG.21203.5,blat.proc3825158.chain_2160	5
scaffold_24	spliced_intron	8950507	8950872	-	asmbl_33127	none	STRG.26916.1,blat.proc3825162.chain_300	2	Trinity_GG_15077_c0_g1_i2,blat.proc3825162.chain_301	2
scaffold_9	alt_acceptor	11130889	11130890	+	asmbl_54336	none	STRG.11428.2	1	STRG.11428.1,Trinity_GG_23692_c0_g1_i1,blat.proc3825170.chain_264	3
scaffold_10	starts_in_intron	13281440	13281440	-	asmbl_4867	none	blat.proc3825154.chain_1549	1	STRG.12922.1,STRG.12922.2,STRG.12922.3,STRG.12922.4,blat.proc3825154.chain_1550	5
scaffold_19	retained_intron	12482434	12483861	-	asmbl_22499	none	Trinity_GG_12581_c0_g1_i1,Trinity_GG_12581_c0_g1_i2,blat.proc3825158.chain_3385,blat.proc3825158.chain_3386	4	STRG.22588.1,blat.proc3825158.chain_3387	2
scaffold_6	alternate_exon	12635171	12635236	+	asmbl_47424,asmbl_47428	none	STRG.8022.3,Trinity_GG_21679_c0_g1_i3,blat.proc3825168.chain_424	3	STRG.8022.1,STRG.8022.2,blat.proc3825168.chain_423	3
scaffold_3	alternate_exon	8162940	8167060	-	asmbl_39022	none	blat.proc3825148.chain_3270	1	Trinity_GG_1828_c12_g1_i1,Trinity_GG_1828_c3_g1_i4,blat.proc3825148.chain_3275,blat.proc3825148.chain_3277,blat.proc3825148.chain_3286	5
scaffold_6	alternate_exon	14177226	14177355	-	asmbl_48991	none	STRG.8181.2,blat.proc3825152.chain_565	2	STRG.8181.1,blat.proc3825152.chain_562	2
scaffold_20	spliced_intron	11078653	11078744	-	asmbl_26130,asmbl_26134	none	STRG.23624.1,blat.proc3825160.chain_592,blat.proc3825160.chain_594	3	blat.proc3825160.chain_591,blat.proc3825160.chain_593	2
scaffold_5	alt_acceptor	18702452	18702453	-	asmbl_44862	none	STRG.6996.2	1	STRG.6996.1,blat.proc3825150.chain_3114	2
scaffold_14	starts_in_intron	16128051	16128051	-	asmbl_13774	none	blat.proc3825156.chain_2654	1	STRG.17857.1,blat.proc3825152.chain_1177,blat.proc3825156.chain_2653	3
scaffold_6	starts_in_intron	18756424	18756424	-	asmbl_49280	none	Trinity_GG_4873_c0_g1_i2,blat.proc3825152.chain_983	2	STRG.8547.1,Trinity_GG_4873_c0_g1_i3,blat.proc3825152.chain_984	3
scaffold_2	ends_in_intron	655158	655158	-	asmbl_22814	none	Trinity_GG_800_c0_g1_i1,blat.proc3825148.chain_1457	2	STRG.1540.1,blat.proc3825148.chain_1458	2
scaffold_19	alt_acceptor	8630	8631	+	asmbl_21167	none	STRG.21816.3	1	STRG.21816.1	1
scaffold_4	alt_acceptor	1980875	1980876	+	asmbl_41154	none	STRG.4215.3	1	STRG.4215.1,blat.proc3825166.chain_615	2
scaffold_9	alternate_exon	573488	574505	+	asmbl_53774	none	STRG.10788.2	1	STRG.10788.1,STRG.10788.3,Trinity_GG_23309_c2_g1_i1	3
scaffold_14	alternate_exon	8216075	8217384	-	asmbl_13252,asmbl_13254	none	STRG.17234.2,blat.proc3825156.chain_2055,blat.proc3825156.chain_2060	3	STRG.17234.4	1
scaffold_18	alt_donor	13802567	13802568	+	asmbl_21039	none	blat.proc3825174.chain_2845	1	STRG.21822.1,Trinity_GG_29370_c2_g1_i2,blat.proc3825174.chain_2844	3
scaffold_13	starts_in_intron	3593920	3593920	+	asmbl_10718	none	Trinity_GG_25923_c0_g1_i4,blat.proc3825172.chain_419	2	STRG.15673.1,STRG.15673.2,Trinity_GG_25923_c0_g1_i1,Trinity_GG_25923_c0_g1_i3,blat.proc3825172.chain_420,blat.proc3825172.chain_421	6
scaffold_2	skipped_exon	6761551	6762100	-	asmbl_23230	none	STRG.2029.3,blat.proc3825148.chain_2013	2	STRG.2029.1,STRG.2029.2,STRG.2029.4,blat.proc3825148.chain_2011,blat.proc3825148.chain_2012	5
scaffold_2	alt_donor	19359384	19359385	+	asmbl_25280	none	STRG.2802.2	1	STRG.2802.1,blat.proc3825164.chain_3043	2
scaffold_18	spliced_intron	6425016	6425279	+	asmbl_20674,asmbl_20675	none	STRG.21370.1,STRG.21370.2,blat.proc3825174.chain_2383,blat.proc3825174.chain_2384,blat.proc3825174.chain_2386	5	Trinity_GG_29106_c0_g1_i4,blat.proc3825174.chain_2385	2
scaffold_4	spliced_intron	12691056	12691283	-	asmbl_42951,asmbl_42952	none	STRG.4910.1,STRG.4910.3,blat.proc3825150.chain_1018,blat.proc3825150.chain_1019	4	STRG.4910.4,blat.proc3825150.chain_1021	2
scaffold_20	retained_exon	11086157	11086249	-	asmbl_26138	none	Trinity_GG_13173_c0_g1_i2,blat.proc3825160.chain_725	2	STRG.23625.2,Trinity_GG_13173_c0_g1_i3,blat.proc3825160.chain_727	3
scaffold_24	skipped_exon	5383776	5385309	+	asmbl_32212	none	STRG.26629.2,blat.proc3825176.chain_3504	2	STRG.26629.1,blat.proc3825176.chain_3503	2
scaffold_17	alt_acceptor	12365094	12365095	+	asmbl_19285	none	STRG.20775.1,blat.proc3825174.chain_1657	2	STRG.20775.3	1
scaffold_14	retained_intron	13897375	13897829	+	asmbl_12515,asmbl_12516	none	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2	STRG.17673.1,blat.proc3825172.chain_2392	2
scaffold_13	alt_acceptor	392795	392796	-	asmbl_9351	none	STRG.15444.5	1	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	25
scaffold_28	alt_acceptor	5851963	5851964	+	asmbl_37608	none	STRG.29721.1	1	STRG.29721.2,Trinity_GG_33776_c0_g1_i1,blat.proc3825178.chain_2885	3
scaffold_28	starts_in_intron	2905500	2905500	+	asmbl_37420	none	Trinity_GG_33667_c0_g1_i2,blat.proc3825178.chain_2692	2	STRG.29485.1,blat.proc3825178.chain_2691	2
scaffold_1	alt_acceptor	5619383	5619384	+	asmbl_1733	none	STRG.355.1	1	STRG.355.2,STRG.355.3	2
scaffold_19	alt_acceptor	6372371	6372372	-	asmbl_22203,asmbl_22204	none	STRG.22156.1,blat.proc3825158.chain_2981,blat.proc3825158.chain_2982	3	STRG.22156.2	1
scaffold_20	starts_in_intron	7186603	7186603	-	asmbl_25885	none	blat.proc3825160.chain_384	1	STRG.23287.1,blat.proc3825160.chain_383	2
scaffold_9	spliced_intron	17851854	17852001	+	asmbl_54656,asmbl_54658	none	STRG.11873.1,Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_572	3	STRG.11873.3,Trinity_GG_23881_c0_g1_i10,blat.proc3825170.chain_573	3
scaffold_10	spliced_intron	16475945	16476026	-	asmbl_5007	none	STRG.13119.4	1	STRG.13119.2,Trinity_GG_7353_c0_g1_i2,blat.proc3825154.chain_1717	3
scaffold_21	spliced_intron	8529725	8529850	+	asmbl_28816,asmbl_28821,asmbl_28822	none	STRG.24391.1,blat.proc3825176.chain_1461,blat.proc3825176.chain_1462,blat.proc3825176.chain_1464,blat.proc3825176.chain_1465	5	blat.proc3825176.chain_1459,blat.proc3825176.chain_1460	2
scaffold_17	alternate_exon	12384936	12387891	-	asmbl_18329	none	STRG.20776.3	1	STRG.20776.5,Trinity_GG_11637_c4_g1_i1,blat.proc3825158.chain_1711,blat.proc3825158.chain_1715	4
scaffold_8	spliced_intron	12124410	12124600	-	asmbl_52183	none	STRG.10404.1,blat.proc3825152.chain_2614	2	STRG.10404.2,blat.proc3825152.chain_2613	2
scaffold_16	alt_acceptor	5515687	5515688	-	asmbl_17126	none	STRG.19311.2	1	STRG.19311.1,Trinity_GG_10823_c0_g1_i1,blat.proc3825158.chain_404	3
scaffold_8	ends_in_intron	5713461	5713461	+	asmbl_52899	none	blat.proc3825168.chain_2555	1	STRG.9992.1	1
scaffold_25	alt_acceptor	4453710	4453711	-	asmbl_34190	none	STRG.27376.2	1	STRG.27376.3	1
scaffold_6	alt_acceptor	12500076	12500077	+	asmbl_47412	none	STRG.8009.1,blat.proc3825168.chain_495	2	blat.proc3825168.chain_494	1
scaffold_6	alt_acceptor	12992093	12992094	-	asmbl_48859	none	STRG.8068.3	1	STRG.8068.1,blat.proc3825152.chain_492	2
scaffold_27	starts_in_intron	626436	626436	-	asmbl_36700	none	blat.proc3825162.chain_1829	1	STRG.28583.1,STRG.28583.2,STRG.28583.3,STRG.28583.4,blat.proc3825162.chain_1824,blat.proc3825162.chain_1825,blat.proc3825162.chain_1827	7
scaffold_3	alt_acceptor	13989078	13989079	+	asmbl_40477,asmbl_40483	none	STRG.3744.3,STRG.3744.5,blat.proc3825166.chain_189	3	STRG.3744.1,STRG.3744.4,blat.proc3825166.chain_191	3
scaffold_5	alternate_exon	4719072	4719217	+	asmbl_45293	none	STRG.5927.2	1	STRG.5927.1,blat.proc3825166.chain_2154	2
scaffold_13	retained_intron	2270481	2270608	-	asmbl_9438,asmbl_9442	none	STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i3,blat.proc3825156.chain_394,blat.proc3825156.chain_400	5	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_390,blat.proc3825156.chain_391,blat.proc3825156.chain_392,blat.proc3825156.chain_393,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	13
scaffold_23	retained_intron	8104276	8104414	+	asmbl_31760	none	STRG.26124.3	1	STRG.26124.1,STRG.26124.2	2
scaffold_2	retained_intron	17838616	17838702	-	asmbl_23757	none	blat.proc3825148.chain_2523	1	STRG.2679.1,blat.proc3825148.chain_2520	2
scaffold_27	alt_donor	628537	628538	-	asmbl_36701	none	STRG.28583.2,blat.proc3825162.chain_1824	2	STRG.28583.1,STRG.28583.3,STRG.28583.4,Trinity_GG_15996_c0_g1_i1,blat.proc3825162.chain_1825,blat.proc3825162.chain_1827,blat.proc3825162.chain_1828	7
scaffold_14	starts_in_intron	584321	584321	+	asmbl_11770	none	Trinity_GG_26527_c1_g1_i1,blat.proc3825172.chain_1520	2	STRG.16740.3	1
scaffold_4	alt_donor	3238368	3238369	-	asmbl_42424	none	STRG.4249.4	1	STRG.4249.1,STRG.4249.3	2
scaffold_24	retained_intron	8747124	8747465	+	asmbl_32440	none	STRG.26888.2,Trinity_GG_32167_c0_g2_i1,blat.proc3825178.chain_76	3	STRG.26888.3	1
scaffold_6	alternate_exon	2489895	2489924	+	asmbl_46758,asmbl_46759	none	STRG.7248.1,STRG.7248.5	2	STRG.7248.4,Trinity_GG_21329_c1_g1_i1,blat.proc3825166.chain_3500	3
scaffold_1	alt_acceptor	3255272	3255273	+	asmbl_1583,asmbl_1584	none	blat.proc3825164.chain_320,blat.proc3825164.chain_322	2	STRG.205.1,Trinity_GG_17459_c0_g1_i4,blat.proc3825164.chain_321	3
scaffold_17	alt_acceptor	9567779	9567780	+	asmbl_19112,asmbl_19115	none	STRG.20575.1,Trinity_GG_28570_c0_g1_i1,Trinity_GG_28570_c0_g1_i3,blat.proc3825174.chain_1411,blat.proc3825174.chain_1413	5	Trinity_GG_28570_c0_g1_i2,blat.proc3825174.chain_1414	2
scaffold_21	skipped_exon	690867	692284	+	asmbl_28285	none	STRG.23756.4	1	STRG.23756.3,Trinity_GG_30469_c0_g1_i1	2
scaffold_5	retained_intron	15539705	15539796	-	asmbl_44695	none	STRG.6744.2	1	STRG.6744.1	1
scaffold_15	alt_donor	12106680	12106681	+	asmbl_15538,asmbl_15539	none	STRG.18668.1,STRG.18668.2	2	blat.proc3825172.chain_3296	1
scaffold_10	skipped_exon	7250455	7252650	-	asmbl_4531,asmbl_4535	none	STRG.12538.1,blat.proc3825154.chain_1074,blat.proc3825154.chain_1075,blat.proc3825154.chain_1076	4	STRG.12538.2,blat.proc3825154.chain_1072,blat.proc3825154.chain_1073	3
scaffold_6	alternate_exon	1761823	1762184	+	asmbl_46742	none	STRG.7226.1,blat.proc3825166.chain_3349	2	STRG.7226.2	1
scaffold_5	skipped_exon	11913476	11914441	+	asmbl_45772	none	STRG.6447.1,blat.proc3825166.chain_2650	2	STRG.6447.2,blat.proc3825166.chain_2651	2
scaffold_16	alternate_exon	7701920	7702280	-	asmbl_17189,asmbl_17191	none	STRG.19419.1,blat.proc3825158.chain_547,blat.proc3825158.chain_548	3	STRG.19419.2	1
scaffold_14	ends_in_intron	4237191	4237191	-	asmbl_13042	none	STRG.16981.2,Trinity_GG_9496_c0_g1_i1,blat.proc3825156.chain_1767	3	STRG.16981.1,Trinity_GG_9496_c0_g1_i2,blat.proc3825156.chain_1766	3
scaffold_21	skipped_exon	8278443	8278631	+	asmbl_28803	none	blat.proc3825176.chain_1550	1	STRG.24368.1,STRG.24368.2,STRG.24368.3	3
scaffold_3	retained_intron	8165751	8166312	-	asmbl_39014	none	Trinity_GG_1828_c10_g1_i1,blat.proc3825148.chain_3284	2	STRG.3440.1,blat.proc3825148.chain_3270	2
scaffold_24	starts_in_intron	1956924	1956924	-	asmbl_32762	none	blat.proc3825160.chain_3491	1	STRG.26424.1,blat.proc3825160.chain_3492	2
scaffold_5	retained_intron	8748542	8748659	+	asmbl_45566,asmbl_45567,asmbl_45569	none	STRG.6210.1,Trinity_GG_20640_c0_g1_i3,Trinity_GG_20640_c0_g1_i5,blat.proc3825166.chain_2310,blat.proc3825166.chain_2311,blat.proc3825166.chain_2312	6	STRG.6210.2,Trinity_GG_20640_c0_g1_i4,blat.proc3825166.chain_2308,blat.proc3825166.chain_2309	4
scaffold_26	ends_in_intron	2962554	2962554	-	asmbl_35461	none	STRG.27989.5	1	STRG.27989.1,STRG.27989.3,STRG.27989.4,blat.proc3825162.chain_1299,blat.proc3825162.chain_1301,blat.proc3825162.chain_1303	6
scaffold_1	alternate_exon	20452066	20452127	+	asmbl_2631	none	STRG.1393.1,Trinity_GG_18126_c0_g1_i3,blat.proc3825164.chain_1539	3	STRG.1393.2	1
scaffold_15	ends_in_intron	388380	388380	+	asmbl_14970	none	blat.proc3825172.chain_2624	1	STRG.17895.1,STRG.17895.2,blat.proc3825172.chain_2619,blat.proc3825172.chain_2622,blat.proc3825172.chain_2623,blat.proc3825172.chain_2625	6
scaffold_2	alt_acceptor	13902715	13902716	-	asmbl_23537,asmbl_23539,asmbl_23540,asmbl_23541	none	STRG.2384.1,STRG.2384.2,blat.proc3825148.chain_2389,blat.proc3825148.chain_2391,blat.proc3825148.chain_2392	5	blat.proc3825148.chain_2390	1
scaffold_19	skipped_exon	12392010	12393051	-	asmbl_22480	none	STRG.22570.3,blat.proc3825158.chain_3327	2	STRG.22570.1,STRG.22570.2,blat.proc3825158.chain_3326,blat.proc3825158.chain_3328,blat.proc3825158.chain_3329,blat.proc3825158.chain_3330	6
scaffold_10	alternate_exon	1164168	1164348	+	asmbl_2911	none	STRG.12004.2,blat.proc3825170.chain_746	2	STRG.12004.1,STRG.12004.3,blat.proc3825170.chain_743,blat.proc3825170.chain_745	4
scaffold_19	ends_in_intron	8224491	8224491	-	asmbl_22288	none	blat.proc3825158.chain_3087	1	STRG.22273.1,blat.proc3825158.chain_3088	2
scaffold_23	spliced_intron	6688346	6688422	+	asmbl_31649	none	STRG.26003.2	1	blat.proc3825176.chain_2933,blat.proc3825176.chain_2935	2
scaffold_28	retained_intron	5390808	5391042	+	asmbl_37584	none	STRG.29687.4,Trinity_GG_33768_c0_g1_i8,blat.proc3825178.chain_2867	3	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,blat.proc3825178.chain_2869,blat.proc3825178.chain_2870	5
scaffold_15	ends_in_intron	4961363	4961363	+	asmbl_15185	none	blat.proc3825172.chain_2894	1	STRG.18207.1,STRG.18207.2,STRG.18207.3,blat.proc3825172.chain_2889,blat.proc3825172.chain_2890	5
scaffold_21	spliced_intron	5279754	5280675	-	asmbl_27644	none	STRG.24066.1,blat.proc3825160.chain_1166	2	STRG.24066.2,STRG.24066.5,Trinity_GG_13405_c0_g1_i4,blat.proc3825160.chain_1168	4
scaffold_6	spliced_intron	12991556	12992335	-	asmbl_48856	none	STRG.8068.1,blat.proc3825152.chain_492	2	STRG.8068.2,blat.proc3825152.chain_495	2
scaffold_27	spliced_intron	6258393	6258607	+	asmbl_36397	none	blat.proc3825178.chain_2193	1	STRG.29016.1,blat.proc3825178.chain_2190	2
scaffold_4	retained_intron	5832068	5832537	+	asmbl_41373,asmbl_41374	none	STRG.4475.1,STRG.4475.3	2	STRG.4475.2	1
scaffold_1	alt_acceptor	3681276	3681277	+	asmbl_1629	none	STRG.242.3	1	blat.proc3825164.chain_371	1
scaffold_23	spliced_intron	7279427	7279762	-	asmbl_31022	none	STRG.26052.1,blat.proc3825160.chain_3144	2	STRG.26052.2,blat.proc3825160.chain_3145	2
scaffold_25	skipped_exon	5156185	5156941	-	asmbl_34249	none	STRG.27443.3	1	STRG.27443.1,STRG.27443.2,blat.proc3825162.chain_805,blat.proc3825162.chain_806,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809,blat.proc3825162.chain_810	8
scaffold_7	starts_in_intron	13174264	13174264	-	asmbl_51291,asmbl_51292	none	blat.proc3825152.chain_1758,blat.proc3825152.chain_1759	2	STRG.9426.1	1
scaffold_27	ends_in_intron	7193944	7193944	-	asmbl_37095	none	STRG.29085.3,blat.proc3825162.chain_2225	2	STRG.29085.1,STRG.29085.2,blat.proc3825162.chain_2223,blat.proc3825162.chain_2224	4
scaffold_2	alternate_exon	6906166	6908216	+	asmbl_24514	none	STRG.2036.2	1	STRG.2036.3	1
scaffold_4	starts_in_intron	12340485	12340485	-	asmbl_42897	none	blat.proc3825150.chain_1055	1	STRG.4868.1,STRG.4868.2,Trinity_GG_2715_c0_g1_i3,blat.proc3825150.chain_1054,blat.proc3825150.chain_1057	5
scaffold_15	starts_in_intron	15501785	15501785	+	asmbl_15803,asmbl_15804	none	STRG.18943.2,blat.proc3825172.chain_3603	2	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602	7
scaffold_4	retained_intron	3237335	3238369	-	asmbl_42422	none	Trinity_GG_2372_c0_g1_i5,Trinity_GG_2372_c0_g1_i7,blat.proc3825150.chain_492,blat.proc3825150.chain_494	4	STRG.4249.4	1
scaffold_5	retained_intron	10314754	10314836	+	asmbl_45676,asmbl_45677	none	Trinity_GG_20769_c0_g1_i1,Trinity_GG_20769_c0_g1_i2,blat.proc3825166.chain_2551,blat.proc3825166.chain_2552	4	STRG.6331.1,blat.proc3825166.chain_2553	2
scaffold_6	retained_intron	9365865	9366049	-	asmbl_48622	none	blat.proc3825152.chain_142	1	STRG.7806.1,blat.proc3825152.chain_143	2
scaffold_17	retained_exon	12170856	12170949	+	asmbl_19269	none	STRG.20748.2,Trinity_GG_28669_c0_g1_i1,blat.proc3825174.chain_1594	3	STRG.20748.1,blat.proc3825174.chain_1595	2
scaffold_7	retained_exon	17611628	17611792	+	asmbl_50485	none	STRG.9612.1,blat.proc3825168.chain_2069	2	STRG.9612.2	1
scaffold_18	retained_intron	8425824	8425992	-	asmbl_20009	none	STRG.21519.1,Trinity_GG_12027_c0_g1_i1,blat.proc3825158.chain_2414	3	STRG.21519.2,Trinity_GG_12027_c0_g1_i2,blat.proc3825158.chain_2415	3
scaffold_11	ends_in_intron	9018059	9018059	-	asmbl_6906	none	blat.proc3825154.chain_2407	1	STRG.13940.1,blat.proc3825154.chain_2408,blat.proc3825154.chain_2410	3
scaffold_22	retained_intron	1008363	1008659	+	asmbl_29914,asmbl_29916	none	STRG.24754.4,blat.proc3825176.chain_1859	2	STRG.24754.2,blat.proc3825176.chain_1856,blat.proc3825176.chain_1858,blat.proc3825176.chain_1861	4
scaffold_19	alt_acceptor	10858078	10858079	-	asmbl_22365	none	STRG.22432.2,blat.proc3825158.chain_3108	2	STRG.22432.1	1
scaffold_13	alt_acceptor	734150	734151	+	asmbl_10507,asmbl_10508	none	STRG.15459.2,STRG.15459.3	2	STRG.15459.1,blat.proc3825172.chain_122	2
scaffold_7	starts_in_intron	15558463	15558463	-	asmbl_51381	none	STRG.9556.2	1	STRG.9556.1	1
scaffold_24	skipped_exon	5290101	5290660	-	asmbl_32886	none	STRG.26616.2	1	STRG.26616.1,blat.proc3825160.chain_3750	2
scaffold_1	alt_donor	11728188	11728189	+	asmbl_2138	none	STRG.788.2,Trinity_GG_17809_c0_g1_i2,blat.proc3825164.chain_963	3	STRG.788.1,Trinity_GG_17809_c0_g1_i1,blat.proc3825164.chain_964	3
scaffold_18	alt_acceptor	8912486	8912487	-	asmbl_20051	none	STRG.21558.1	1	STRG.21558.6,STRG.21558.7,blat.proc3825158.chain_2449	3
scaffold_1	spliced_intron	5729304	5729775	+	asmbl_1765	none	blat.proc3825164.chain_502	1	STRG.387.1,STRG.387.2,blat.proc3825164.chain_503,blat.proc3825164.chain_504	4
scaffold_21	alt_acceptor	8570421	8570422	+	asmbl_28826	none	STRG.24382.1,Trinity_GG_30811_c0_g1_i1,blat.proc3825176.chain_1574	3	STRG.24382.2	1
scaffold_9	retained_intron	11843908	11844161	-	asmbl_55333	none	blat.proc3825152.chain_3659	1	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	8
scaffold_13	alt_donor	16161668	16161669	-	asmbl_10268	none	STRG.16658.2,blat.proc3825156.chain_1469	2	STRG.16658.1,blat.proc3825156.chain_1468	2
scaffold_13	spliced_intron	7717856	7718018	-	asmbl_9904,asmbl_9906	none	STRG.16058.2,blat.proc3825156.chain_888,blat.proc3825156.chain_891	3	blat.proc3825156.chain_889	1
scaffold_2	spliced_intron	15272997	15273081	+	asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25018,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	6	blat.proc3825164.chain_2618	1
scaffold_10	spliced_intron	4715798	4715969	-	asmbl_4309	none	STRG.12295.2	1	STRG.12295.3	1
scaffold_6	starts_in_intron	13246163	13246163	-	asmbl_48900	none	blat.proc3825152.chain_500	1	STRG.8085.1,STRG.8085.2,blat.proc3825152.chain_501	3
scaffold_18	alt_donor	12400434	12400435	-	asmbl_20143	none	STRG.21709.2	1	blat.proc3825158.chain_2583	1
scaffold_2	retained_intron	13403024	13403216	+	asmbl_24850	none	STRG.2365.1,Trinity_GG_18638_c1_g1_i4,blat.proc3825164.chain_2550	3	Trinity_GG_18638_c1_g1_i2,blat.proc3825164.chain_2551	2
scaffold_8	spliced_intron	12193942	12194153	-	asmbl_52186	none	STRG.10405.1,blat.proc3825152.chain_2626	2	blat.proc3825152.chain_2625	1
scaffold_14	retained_intron	13900780	13900986	+	asmbl_12516	none	blat.proc3825172.chain_2396	1	STRG.17673.2,blat.proc3825172.chain_2394	2
scaffold_1295	ends_in_intron	1174	1174	+	asmbl_9292	none	Trinity_GG_34205_c0_g1_i3,blat.proc3825178.chain_3578	2	STRG.30584.1,blat.proc3825178.chain_3579,blat.proc3825178.chain_3580	3
scaffold_10	starts_in_intron	8329800	8329800	-	asmbl_4578,asmbl_4581	none	blat.proc3825154.chain_1186,blat.proc3825154.chain_1191,blat.proc3825154.chain_1193	3	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1182,blat.proc3825154.chain_1188,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190,blat.proc3825154.chain_1192	7
scaffold_7	alternate_exon	1233415	1233709	+	asmbl_49590	none	Trinity_GG_22033_c0_g1_i1,blat.proc3825168.chain_1074	2	blat.proc3825168.chain_1068	1
scaffold_17	alt_donor	6806043	6806044	-	asmbl_17986,asmbl_17987	none	STRG.20334.1,STRG.20334.2	2	STRG.20334.3	1
scaffold_14	retained_intron	12824418	12824716	-	asmbl_13618	none	blat.proc3825156.chain_2461	1	STRG.17598.5,Trinity_GG_9905_c0_g1_i1,blat.proc3825156.chain_2462	3
scaffold_27	spliced_intron	2881786	2881921	+	asmbl_36142,asmbl_36143,asmbl_36144,asmbl_36146	none	STRG.28771.1,STRG.28771.2,STRG.28771.3,blat.proc3825178.chain_1938,blat.proc3825178.chain_1940,blat.proc3825178.chain_1941,blat.proc3825178.chain_1943	7	blat.proc3825178.chain_1942	1
scaffold_17	skipped_exon	1665159	1667659	+	asmbl_18621	none	STRG.20000.2,blat.proc3825174.chain_889	2	STRG.20000.1,blat.proc3825174.chain_887,blat.proc3825174.chain_888	3
scaffold_3	starts_in_intron	13682771	13682771	-	asmbl_39286	none	blat.proc3825148.chain_3598	1	STRG.3710.1	1
scaffold_20	alternate_exon	11480895	11481277	+	asmbl_27055	none	Trinity_GG_30405_c0_g2_i1,blat.proc3825176.chain_848	2	STRG.23653.3,Trinity_GG_30405_c0_g1_i1,Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_845,blat.proc3825176.chain_847	5
scaffold_20	alt_donor	9825846	9825847	-	asmbl_26055,asmbl_26056,asmbl_26058	none	STRG.23529.1,STRG.23529.2,blat.proc3825160.chain_614,blat.proc3825160.chain_615,blat.proc3825160.chain_616	5	blat.proc3825160.chain_613	1
scaffold_13	skipped_exon	15672345	15672546	+	asmbl_11528	none	STRG.16612.6	1	STRG.16612.3,STRG.16612.4	2
scaffold_27	retained_exon	3020770	3020793	+	asmbl_36171	none	blat.proc3825178.chain_1872	1	STRG.28790.1,STRG.28790.2,blat.proc3825178.chain_1868,blat.proc3825178.chain_1873	4
scaffold_9	alternate_exon	16557013	16563814	-	asmbl_55586,asmbl_55591	none	blat.proc3825154.chain_266,blat.proc3825154.chain_270,blat.proc3825154.chain_274	3	Trinity_GG_6524_c0_g1_i13,Trinity_GG_6524_c0_g1_i4,blat.proc3825154.chain_265,blat.proc3825154.chain_269	4
scaffold_7	spliced_intron	15595021	15595253	+	asmbl_50448	none	STRG.9560.3	1	STRG.9560.1,blat.proc3825168.chain_2061	2
scaffold_14	alt_acceptor	399370	399371	+	asmbl_11753,asmbl_11754,asmbl_11755	none	STRG.16734.3,Trinity_GG_26526_c0_g1_i10,Trinity_GG_26526_c0_g1_i18,blat.proc3825172.chain_1507,blat.proc3825172.chain_1514	5	STRG.16734.1,STRG.16734.2,STRG.16734.4,Trinity_GG_26526_c0_g1_i23,blat.proc3825172.chain_1504	5
scaffold_3	retained_intron	13423924	13424030	-	asmbl_39259	none	STRG.3693.1,blat.proc3825148.chain_3584	2	STRG.3693.3,blat.proc3825148.chain_3585	2
scaffold_15	retained_intron	15856548	15857174	+	asmbl_15826,asmbl_15827	none	blat.proc3825172.chain_3572,blat.proc3825172.chain_3573	2	STRG.18973.1,STRG.18973.2,STRG.18973.3,STRG.18973.5,Trinity_GG_27688_c0_g1_i10,Trinity_GG_27688_c0_g1_i12,Trinity_GG_27688_c0_g1_i5,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3569,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3576,blat.proc3825172.chain_3578	13
scaffold_4	skipped_exon	5228399	5231130	-	asmbl_42574,asmbl_42577	none	STRG.4416.2,STRG.4416.4,blat.proc3825150.chain_648	3	STRG.4416.5,blat.proc3825150.chain_649	2
scaffold_10	retained_intron	6466373	6466479	-	asmbl_4464,asmbl_4465	none	blat.proc3825154.chain_1049,blat.proc3825154.chain_1050	2	blat.proc3825154.chain_1051,blat.proc3825154.chain_1052,blat.proc3825154.chain_1053,blat.proc3825154.chain_1054	4
scaffold_11	retained_exon	8896441	8896553	-	asmbl_6884	none	STRG.13911.1	1	STRG.13911.2	1
scaffold_20	starts_in_intron	8352055	8352055	-	asmbl_25988	none	Trinity_GG_13067_c0_g1_i1	1	STRG.23385.1	1
scaffold_1	alt_donor	11096247	11096248	+	asmbl_2058	none	STRG.726.2	1	Trinity_GG_17769_c0_g1_i4	1
scaffold_4	starts_in_intron	9558088	9558088	+	asmbl_41616	none	Trinity_GG_19956_c0_g1_i2,blat.proc3825166.chain_1194	2	STRG.4736.1,blat.proc3825166.chain_1195	2
scaffold_20	alternate_exon	1569691	1569729	+	asmbl_26427	none	STRG.22885.1,blat.proc3825176.chain_15	2	STRG.22885.2	1
scaffold_9	retained_intron	17658989	17659123	-	asmbl_55669,asmbl_55670	none	STRG.11848.1,STRG.11848.2,Trinity_GG_6559_c0_g1_i3,Trinity_GG_6559_c0_g1_i4,blat.proc3825154.chain_337,blat.proc3825154.chain_339	6	STRG.11848.3,Trinity_GG_6559_c0_g1_i1,blat.proc3825154.chain_338	3
scaffold_18	alt_acceptor	12608869	12608870	-	asmbl_20160	none	STRG.21724.1	1	STRG.21724.2,blat.proc3825158.chain_2614	2
scaffold_8	spliced_intron	8969632	8969801	-	asmbl_51983	none	STRG.10148.1,blat.proc3825152.chain_2425	2	blat.proc3825152.chain_2424	1
scaffold_7	ends_in_intron	12390374	12390374	-	asmbl_51211	none	blat.proc3825152.chain_1656	1	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1661	5
scaffold_17	ends_in_intron	7062136	7062136	-	asmbl_18033	none	Trinity_GG_11463_c0_g1_i1	1	blat.proc3825158.chain_1427	1
scaffold_15	retained_exon	15857503	15857571	+	asmbl_15821,asmbl_15822,asmbl_15823,asmbl_15829	none	STRG.18973.2,STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575	9	STRG.18973.3,Trinity_GG_27688_c0_g1_i12,blat.proc3825172.chain_3569	3
scaffold_28	spliced_intron	232029	232185	+	asmbl_37255,asmbl_37256,asmbl_37257,asmbl_37259	none	STRG.29253.1,blat.proc3825178.chain_2480,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483,blat.proc3825178.chain_2485	5	blat.proc3825178.chain_2481	1
scaffold_19	alt_acceptor	7501378	7501379	+	asmbl_21461	none	STRG.22226.2	1	STRG.22226.1,blat.proc3825174.chain_3217	2
scaffold_17	starts_in_intron	8808409	8808409	-	asmbl_18116	none	blat.proc3825158.chain_1439	1	STRG.20490.1,STRG.20490.2,blat.proc3825158.chain_1440,blat.proc3825158.chain_1441,blat.proc3825158.chain_1442	5
scaffold_6	spliced_intron	13871377	13871524	+	asmbl_47543	none	STRG.8133.2,blat.proc3825152.chain_603,blat.proc3825168.chain_640	3	Trinity_GG_21790_c0_g1_i2,Trinity_GG_4651_c0_g1_i3,blat.proc3825152.chain_604,blat.proc3825168.chain_641	4
scaffold_4	retained_intron	16481131	16481263	-	asmbl_43178	none	STRG.5225.2,blat.proc3825150.chain_1406	2	blat.proc3825150.chain_1405	1
scaffold_15	spliced_intron	12000050	12000403	-	asmbl_14547,asmbl_14548,asmbl_14549	none	STRG.18639.1,STRG.18639.3,Trinity_GG_10485_c0_g1_i2,Trinity_GG_10485_c0_g1_i3,Trinity_GG_10485_c0_g1_i4,blat.proc3825156.chain_3531,blat.proc3825156.chain_3532,blat.proc3825156.chain_3534	8	STRG.18639.2,STRG.18639.4,blat.proc3825156.chain_3533	3
scaffold_10	retained_intron	3794012	3794169	-	asmbl_4230	none	Trinity_GG_6819_c0_g1_i1,blat.proc3825154.chain_779	2	blat.proc3825154.chain_783	1
scaffold_18	ends_in_intron	1712826	1712826	-	asmbl_19639	none	Trinity_GG_11769_c0_g1_i3,blat.proc3825158.chain_1943	2	STRG.21062.1,blat.proc3825158.chain_1942	2
scaffold_17	retained_intron	10838527	10838830	-	asmbl_18250	none	blat.proc3825158.chain_1685	1	blat.proc3825158.chain_1686	1
scaffold_1	spliced_intron	12916451	12916553	+	asmbl_2272,asmbl_2275	none	STRG.922.1,blat.proc3825164.chain_1118,blat.proc3825164.chain_1119	3	STRG.922.2,blat.proc3825164.chain_1116	2
scaffold_2174	retained_intron	1221	1252	-	asmbl_29059	none	STRG.30718.2	1	STRG.30718.1	1
scaffold_8	retained_intron	6019010	6019279	+	asmbl_52920	none	Trinity_GG_22906_c2_g1_i2,Trinity_GG_22906_c2_g1_i3,blat.proc3825168.chain_2620,blat.proc3825168.chain_2621	4	STRG.10013.1,blat.proc3825168.chain_2622	2
scaffold_20	retained_intron	1754144	1754287	+	asmbl_26451	none	STRG.22921.1,blat.proc3825176.chain_122	2	STRG.22921.2,Trinity_GG_29951_c0_g1_i3,blat.proc3825176.chain_125	3
scaffold_1	ends_in_intron	1216066	1216066	-	asmbl_49	none	Trinity_GG_36_c0_g2_i2,blat.proc3825148.chain_72	2	STRG.65.1,STRG.65.2,STRG.65.3,Trinity_GG_36_c0_g2_i1,blat.proc3825148.chain_71	5
scaffold_1	alternate_exon	6817921	6817995	-	asmbl_379	none	blat.proc3825148.chain_461	1	STRG.472.1	1
scaffold_10	retained_intron	13000440	13000630	-	asmbl_4846	none	blat.proc3825154.chain_1512	1	STRG.12908.1,Trinity_GG_7223_c1_g1_i2,blat.proc3825154.chain_1510	3
scaffold_3	starts_in_intron	7217303	7217303	-	asmbl_38955,asmbl_38957	none	STRG.3326.2,Trinity_GG_1790_c0_g3_i1,blat.proc3825148.chain_3188	3	STRG.3326.1,blat.proc3825148.chain_3185	2
scaffold_25	ends_in_intron	3275074	3275074	+	asmbl_33414	none	blat.proc3825178.chain_382	1	STRG.27272.1,blat.proc3825178.chain_383	2
scaffold_4	retained_exon	15295934	15296017	+	asmbl_41942	none	STRG.5125.2	1	STRG.5125.1,blat.proc3825166.chain_1527,blat.proc3825166.chain_1528	3
scaffold_21	alternate_exon	1756164	1758796	-	asmbl_27421	none	STRG.23823.1,blat.proc3825160.chain_961	2	STRG.23823.3	1
scaffold_12	spliced_intron	9071332	9071490	+	asmbl_7851	none	STRG.14915.1,Trinity_GG_25570_c0_g1_i2,blat.proc3825170.chain_3504	3	Trinity_GG_25570_c0_g1_i4,blat.proc3825170.chain_3505	2
scaffold_5	retained_intron	10171095	10171274	+	asmbl_45666	none	blat.proc3825166.chain_2513	1	STRG.6320.1,blat.proc3825166.chain_2512	2
scaffold_15	skipped_exon	4133120	4133882	-	asmbl_14130	none	STRG.18161.2	1	STRG.18161.1,blat.proc3825156.chain_2965	2
scaffold_4	spliced_intron	6286227	6286678	-	asmbl_42666,asmbl_42669,asmbl_42673	none	STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i7,blat.proc3825150.chain_774,blat.proc3825150.chain_780	6	Trinity_GG_2543_c0_g1_i1,blat.proc3825150.chain_779	2
scaffold_22	retained_exon	9720834	9721808	+	asmbl_30313	none	STRG.25308.1,blat.proc3825176.chain_2309	2	STRG.25308.2	1
scaffold_5	alternate_exon	7027808	7027834	+	asmbl_45474	none	STRG.6116.2	1	STRG.6116.1	1
scaffold_15	spliced_intron	1500945	1501282	-	asmbl_13954	none	blat.proc3825156.chain_2803	1	blat.proc3825156.chain_2801	1
scaffold_5	alternate_exon	7444107	7444214	-	asmbl_44183	none	STRG.6148.1	1	STRG.6148.2	1
scaffold_25	alt_acceptor	6311971	6311972	-	asmbl_34350	none	STRG.27516.1	1	STRG.27516.2,blat.proc3825162.chain_906	2
scaffold_2	ends_in_intron	14746298	14746298	+	asmbl_24979	none	Trinity_GG_18661_c0_g1_i2,blat.proc3825164.chain_2631	2	STRG.2475.1,STRG.2475.2,Trinity_GG_18661_c0_g1_i8,blat.proc3825164.chain_2627,blat.proc3825164.chain_2629,blat.proc3825164.chain_2630	6
scaffold_7	alt_acceptor	83570	83571	-	asmbl_50661	none	STRG.8589.1	1	STRG.8589.2	1
scaffold_1	alternate_exon	20133630	20134955	-	asmbl_1171	none	STRG.1386.2,Trinity_GG_758_c0_g1_i1	2	STRG.1386.7	1
scaffold_15	alt_acceptor	15355114	15355115	+	asmbl_15758,asmbl_15760,asmbl_15762	none	STRG.18922.3,Trinity_GG_27686_c0_g1_i7,blat.proc3825172.chain_3561,blat.proc3825172.chain_3563	4	STRG.18922.2,blat.proc3825172.chain_3562,blat.proc3825172.chain_3566	3
scaffold_5	alternate_exon	13097577	13097598	+	asmbl_45852	none	STRG.6545.1	1	STRG.6545.2	1
scaffold_14	alternate_exon	11649410	11649799	-	asmbl_13509	none	STRG.17507.1,blat.proc3825156.chain_2338	2	blat.proc3825156.chain_2337	1
scaffold_13	starts_in_intron	14561182	14561182	-	asmbl_10196	none	STRG.16504.2,blat.proc3825156.chain_1268	2	STRG.16504.1,STRG.16504.3,STRG.16504.4,STRG.16504.5,blat.proc3825156.chain_1269,blat.proc3825156.chain_1270,blat.proc3825156.chain_1271,blat.proc3825156.chain_1272	8
scaffold_28	alt_donor	4202701	4202702	+	asmbl_37520,asmbl_37525,asmbl_37526	none	STRG.29616.1,STRG.29616.2,Trinity_GG_33739_c0_g1_i8,blat.proc3825178.chain_2811	4	STRG.29616.3	1
scaffold_24	ends_in_intron	10480734	10480734	+	asmbl_32568	none	blat.proc3825178.chain_206	1	STRG.27018.4	1
scaffold_26	alt_donor	1322135	1322136	-	asmbl_35402	none	blat.proc3825162.chain_1237	1	STRG.27913.3	1
scaffold_7	retained_intron	15232602	15232777	+	asmbl_50416,asmbl_50417	none	STRG.9539.1,blat.proc3825168.chain_2053,blat.proc3825168.chain_2054	3	STRG.9539.2	1
scaffold_18	ends_in_intron	13455178	13455178	+	asmbl_21019	none	STRG.21787.3	1	blat.proc3825174.chain_2751	1
scaffold_5	retained_intron	9704095	9704464	-	asmbl_44296,asmbl_44298	none	STRG.6293.3,Trinity_GG_3551_c0_g1_i17,blat.proc3825150.chain_2501	3	STRG.6293.4,blat.proc3825150.chain_2497,blat.proc3825150.chain_2505	3
scaffold_5	retained_exon	236514	237070	-	asmbl_43762	none	STRG.5593.2	1	STRG.5593.3,blat.proc3825150.chain_1832	2
scaffold_21	skipped_exon	5774264	5776476	-	asmbl_27697	none	STRG.24114.3	1	STRG.24114.2,blat.proc3825160.chain_1203	2
scaffold_4	retained_intron	8427334	8427438	-	asmbl_42772,asmbl_42775	none	STRG.4673.1,Trinity_GG_2573_c0_g1_i2,blat.proc3825150.chain_828,blat.proc3825150.chain_829	4	STRG.4673.2,blat.proc3825150.chain_830	2
scaffold_7	alternate_exon	17731667	17735486	+	asmbl_50492,asmbl_50494	none	STRG.9619.1,blat.proc3825168.chain_2072,blat.proc3825168.chain_2074	3	STRG.9619.2	1
scaffold_4	alt_donor	12788899	12788900	+	asmbl_41752,asmbl_41753	none	STRG.4935.1,blat.proc3825166.chain_1369	2	STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365	3
scaffold_19	alternate_exon	13191473	13215098	-	asmbl_22610,asmbl_22619,asmbl_22620,asmbl_22621,asmbl_22622,asmbl_22623	none	STRG.22653.1,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3436	7	Trinity_GG_12588_c1_g1_i13,blat.proc3825158.chain_3429	2
scaffold_28	starts_in_intron	5008628	5008628	+	asmbl_37560,asmbl_37561	none	blat.proc3825178.chain_2833,blat.proc3825178.chain_2834	2	STRG.29651.1,Trinity_GG_33747_c1_g1_i1,blat.proc3825178.chain_2836	3
scaffold_9	spliced_intron	12272920	12273070	-	asmbl_55365	none	STRG.11551.1,blat.proc3825154.chain_19	2	blat.proc3825154.chain_20	1
scaffold_2	spliced_intron	14557091	14557286	+	asmbl_24948,asmbl_24949,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24960,asmbl_24961	none	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2658,blat.proc3825164.chain_2661,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11	blat.proc3825164.chain_2657	1
scaffold_21	retained_intron	5153424	5153601	-	asmbl_27617	none	STRG.24049.1,blat.proc3825160.chain_1188	2	STRG.24049.2	1
scaffold_6	alt_donor	10147730	10147731	-	asmbl_48663	none	STRG.7847.1,blat.proc3825152.chain_192	2	blat.proc3825152.chain_193	1
scaffold_14	spliced_intron	10410634	10411783	-	asmbl_13422	none	STRG.17395.2	1	STRG.17395.1,Trinity_GG_9752_c0_g1_i1,Trinity_GG_9752_c0_g1_i2,blat.proc3825156.chain_2217	4
scaffold_28	retained_intron	5011999	5012133	+	asmbl_37557	none	Trinity_GG_33747_c0_g2_i4,blat.proc3825178.chain_2832	2	STRG.29651.1,blat.proc3825178.chain_2833,blat.proc3825178.chain_2834	3
scaffold_12	alt_donor	134635	134636	+	asmbl_7435,asmbl_7438	none	STRG.14431.2,blat.proc3825170.chain_2984	2	STRG.14431.1,STRG.14431.3,blat.proc3825170.chain_2985	3
scaffold_27	alt_acceptor	6907785	6907786	+	asmbl_36417	none	STRG.29055.2	1	STRG.29055.1,blat.proc3825178.chain_2261	2
scaffold_9	retained_exon	15384544	15384598	+	asmbl_54558,asmbl_54561	none	STRG.11739.1,blat.proc3825170.chain_501,blat.proc3825170.chain_503	3	STRG.11739.2,STRG.11739.4,blat.proc3825170.chain_498,blat.proc3825170.chain_499,blat.proc3825170.chain_500	5
scaffold_10	alternate_exon	9543894	9552656	+	asmbl_3397,asmbl_3404	none	STRG.12711.2,STRG.12711.3	2	Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1287	2
scaffold_17	spliced_intron	3142038	3142233	-	asmbl_17801	none	STRG.20097.1,blat.proc3825158.chain_1116	2	STRG.20097.2,Trinity_GG_11267_c0_g1_i3	2
scaffold_19	retained_intron	12102324	12102615	-	asmbl_22453	none	STRG.22535.1,blat.proc3825158.chain_3219	2	STRG.22535.2,blat.proc3825158.chain_3218	2
scaffold_17	retained_intron	2533988	2534159	-	asmbl_17759	none	blat.proc3825158.chain_1071	1	STRG.20049.1,STRG.20049.2,blat.proc3825158.chain_1072,blat.proc3825158.chain_1073,blat.proc3825158.chain_1074	5
scaffold_11	spliced_intron	14532679	14533569	+	asmbl_6089	none	STRG.14252.3,Trinity_GG_25124_c0_g1_i3,blat.proc3825170.chain_2707	3	STRG.14252.1,Trinity_GG_25124_c0_g1_i4,blat.proc3825170.chain_2708,blat.proc3825170.chain_2709	4
scaffold_15	retained_intron	8829496	8829673	+	asmbl_15358,asmbl_15359	none	Trinity_GG_27426_c0_g1_i1,blat.proc3825172.chain_3102,blat.proc3825172.chain_3104	3	STRG.18428.1,blat.proc3825172.chain_3103	2
scaffold_15	alternate_exon	12064304	12064531	+	asmbl_15524	none	STRG.18652.1,blat.proc3825172.chain_3281	2	STRG.18652.2,blat.proc3825172.chain_3280	2
scaffold_15	alternate_exon	15345685	15345817	+	asmbl_15754	none	STRG.18919.1	1	STRG.18919.4,blat.proc3825172.chain_3554	2
scaffold_14	starts_in_intron	1592359	1592359	-	asmbl_12898	none	blat.proc3825156.chain_1565	1	STRG.16799.1,STRG.16799.2,STRG.16799.3,STRG.16799.4,Trinity_GG_16450_c0_g1_i1,Trinity_GG_16450_c0_g1_i2,blat.proc3825156.chain_1564,blat.proc3825156.chain_1566	8
scaffold_11	ends_in_intron	11942447	11942447	-	asmbl_7052	none	blat.proc3825154.chain_2596	1	STRG.14177.4	1
scaffold_11	alt_acceptor	2203649	2203650	-	asmbl_6484	none	STRG.13383.2	1	STRG.13383.1,STRG.13383.3,STRG.13383.4	3
scaffold_10	spliced_intron	13002218	13002487	+	asmbl_3571	none	STRG.12909.1,blat.proc3825170.chain_1524	2	STRG.12909.3,blat.proc3825170.chain_1526	2
scaffold_6	alt_donor	14934105	14934106	-	asmbl_49042	none	STRG.8268.1,blat.proc3825152.chain_645	2	STRG.8268.2	1
scaffold_10	alt_donor	7120640	7120641	-	asmbl_4529	none	STRG.12530.2	1	STRG.12530.1,blat.proc3825154.chain_1120	2
scaffold_5	alternate_exon	4690185	4690234	-	asmbl_43990	none	blat.proc3825150.chain_2079	1	blat.proc3825150.chain_2075,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084	3
scaffold_2	retained_exon	6761643	6761771	-	asmbl_23232	none	STRG.2029.2,blat.proc3825148.chain_2012	2	STRG.2029.3,blat.proc3825148.chain_2013	2
scaffold_11	alt_acceptor	6608394	6608395	-	asmbl_6728	none	STRG.13704.1,blat.proc3825154.chain_2262	2	STRG.13704.2	1
scaffold_21	alternate_exon	254754	256224	-	asmbl_27282,asmbl_27286	none	STRG.23725.5,blat.proc3825160.chain_809,blat.proc3825160.chain_811,blat.proc3825160.chain_812	4	Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_813	2
scaffold_10	starts_in_intron	3759631	3759631	-	asmbl_4219,asmbl_4220	none	STRG.12208.1,STRG.12208.3	2	STRG.12208.4	1
scaffold_1	alt_acceptor	18028742	18028743	-	asmbl_1077	none	STRG.1268.4	1	STRG.1268.5,STRG.1268.7	2
scaffold_16	alt_acceptor	5962492	5962493	+	asmbl_16249	none	STRG.19328.1	1	STRG.19328.2	1
scaffold_8	retained_exon	13144679	13144729	-	asmbl_52276,asmbl_52277	none	blat.proc3825152.chain_2725,blat.proc3825152.chain_2726	2	blat.proc3825152.chain_2724,blat.proc3825152.chain_2727	2
scaffold_23	alt_donor	4311119	4311120	+	asmbl_31496,asmbl_31498,asmbl_31499,asmbl_31501	none	STRG.25852.1,Trinity_GG_31566_c0_g1_i9,blat.proc3825176.chain_2772,blat.proc3825176.chain_2777,blat.proc3825176.chain_2779	5	blat.proc3825176.chain_2773	1
scaffold_1	retained_intron	6299428	6299553	-	asmbl_349	none	STRG.427.3,blat.proc3825148.chain_325	2	STRG.427.1,STRG.427.2,blat.proc3825148.chain_327,blat.proc3825148.chain_330,blat.proc3825148.chain_331	5
scaffold_17	alternate_exon	2274777	2276490	-	asmbl_17741	none	STRG.20020.1,Trinity_GG_11232_c1_g1_i1,blat.proc3825158.chain_1063,blat.proc3825158.chain_1064	4	STRG.20020.2,blat.proc3825158.chain_1062	2
scaffold_17	alt_acceptor	6801718	6801719	+	asmbl_18875	none	STRG.20333.4	1	STRG.20333.1,STRG.20333.2,STRG.20333.3,blat.proc3825174.chain_1165,blat.proc3825174.chain_1166,blat.proc3825174.chain_1167	6
scaffold_14	retained_intron	2375443	2375890	-	asmbl_12936,asmbl_12940	none	STRG.16854.1,Trinity_GG_9462_c0_g1_i7	2	STRG.16854.2,STRG.16854.3,STRG.16854.4,STRG.16854.6	4
scaffold_16	alt_donor	4638519	4638520	+	asmbl_16192	none	STRG.19250.2	1	STRG.19250.1,blat.proc3825174.chain_52	2
scaffold_1	starts_in_intron	12934170	12934170	-	asmbl_781	none	Trinity_GG_473_c0_g1_i2,blat.proc3825148.chain_891	2	STRG.929.1,STRG.929.2,Trinity_GG_473_c0_g1_i1,blat.proc3825148.chain_892	4
scaffold_4	spliced_intron	5653074	5653166	-	asmbl_42616,asmbl_42618,asmbl_42619,asmbl_42620,asmbl_42621,asmbl_42623,asmbl_42624,asmbl_42625	none	STRG.4472.1,STRG.4472.2,STRG.4472.3,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_658,blat.proc3825150.chain_659,blat.proc3825150.chain_662,blat.proc3825150.chain_663,blat.proc3825150.chain_666	11	blat.proc3825150.chain_657	1
scaffold_10	skipped_exon	6052141	6054671	+	asmbl_3229	none	STRG.12435.2,blat.proc3825170.chain_1071	2	STRG.12435.1,STRG.12435.3,STRG.12435.4,blat.proc3825170.chain_1067,blat.proc3825170.chain_1069	5
scaffold_16	retained_intron	2386305	2386382	-	asmbl_16964	none	STRG.19133.1,blat.proc3825158.chain_271	2	STRG.19133.2	1
scaffold_12	spliced_intron	1973797	1973924	-	asmbl_8311	none	STRG.14485.1	1	Trinity_GG_8074_c0_g1_i1,blat.proc3825154.chain_2976	2
scaffold_3	starts_in_intron	6218757	6218757	-	asmbl_38924	none	STRG.3267.3,blat.proc3825148.chain_3067	2	STRG.3267.1,STRG.3267.2	2
scaffold_11	alt_acceptor	5125246	5125247	-	asmbl_6654	none	STRG.13605.1,blat.proc3825154.chain_2108	2	STRG.13605.2,blat.proc3825154.chain_2107	2
scaffold_4	spliced_intron	9353119	9353325	-	asmbl_42810	none	blat.proc3825150.chain_947	1	STRG.4735.1,blat.proc3825150.chain_946,blat.proc3825150.chain_949,blat.proc3825150.chain_950	4
scaffold_8	retained_intron	9466234	9466322	-	asmbl_52038,asmbl_52040	none	Trinity_GG_5708_c0_g1_i2,blat.proc3825152.chain_2502	2	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5
scaffold_23	alternate_exon	4097681	4099714	-	asmbl_30833	none	STRG.25826.2	1	blat.proc3825160.chain_3029	1
scaffold_15	retained_intron	12008633	12009314	-	asmbl_14554,asmbl_14556	none	STRG.18664.2,Trinity_GG_10486_c1_g1_i10,blat.proc3825156.chain_3537,blat.proc3825156.chain_3540	4	STRG.18664.3,blat.proc3825156.chain_3539,blat.proc3825156.chain_3541	3
scaffold_1	starts_in_intron	15880536	15880536	+	asmbl_2452	none	Trinity_GG_17990_c0_g1_i1,blat.proc3825164.chain_1297	2	STRG.1114.1,blat.proc3825164.chain_1298	2
scaffold_27	starts_in_intron	623468	623468	+	asmbl_35958	none	Trinity_GG_33106_c1_g1_i1,blat.proc3825178.chain_1679	2	STRG.28581.1,STRG.28581.2,blat.proc3825178.chain_1678	3
scaffold_25	spliced_intron	5828116	5828229	-	asmbl_34297	none	blat.proc3825162.chain_881	1	blat.proc3825162.chain_874	1
scaffold_18	spliced_intron	4724166	4724270	-	asmbl_19821	none	STRG.21264.1,blat.proc3825158.chain_2140	2	Trinity_GG_11858_c0_g1_i3,blat.proc3825158.chain_2139	2
scaffold_13	spliced_intron	3570908	3571205	+	asmbl_10712,asmbl_10715	none	STRG.15671.1,blat.proc3825172.chain_380,blat.proc3825172.chain_383	3	STRG.15671.2,STRG.15671.3,Trinity_GG_25901_c0_g1_i4,blat.proc3825172.chain_381,blat.proc3825172.chain_382	5
scaffold_1	spliced_intron	1533624	1533762	+	asmbl_1485	none	STRG.95.1,Trinity_GG_17389_c0_g1_i2,blat.proc3825164.chain_206	3	Trinity_GG_17389_c0_g1_i1,blat.proc3825164.chain_205	2
scaffold_11	spliced_intron	257277	257296	+	asmbl_5284	none	STRG.13260.1	1	Trinity_GG_24610_c0_g1_i1,blat.proc3825170.chain_1830	2
scaffold_7	alternate_exon	1511335	1511384	+	asmbl_49612	none	STRG.8645.2	1	STRG.8645.1,Trinity_GG_22057_c0_g1_i1,blat.proc3825168.chain_1132	3
scaffold_17	ends_in_intron	5137127	5137127	-	asmbl_17924	none	STRG.20247.4	1	STRG.20247.1,STRG.20247.2,STRG.20247.3,blat.proc3825158.chain_1307,blat.proc3825158.chain_1308,blat.proc3825158.chain_1309,blat.proc3825158.chain_1310	7
scaffold_26	spliced_intron	5891547	5891797	+	asmbl_35052	none	STRG.28300.1,blat.proc3825178.chain_1388	2	STRG.28300.3,blat.proc3825178.chain_1387	2
scaffold_3	starts_in_intron	17945793	17945793	-	asmbl_39580	none	STRG.4013.1	1	blat.proc3825150.chain_149	1
scaffold_14	ends_in_intron	8306436	8306436	+	asmbl_12220	none	blat.proc3825172.chain_2010	1	STRG.17257.1,STRG.17257.2,blat.proc3825172.chain_2012	3
scaffold_18	spliced_intron	1904443	1905350	-	asmbl_19654,asmbl_19659,asmbl_19660,asmbl_19661,asmbl_19663,asmbl_19665	none	STRG.21081.6,STRG.21081.8,Trinity_GG_11794_c0_g2_i1,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2017	6	STRG.21081.10,STRG.21081.3,Trinity_GG_11794_c1_g1_i1,blat.proc3825158.chain_2021	4
scaffold_4	spliced_intron	4113453	4113870	-	asmbl_42480,asmbl_42481,asmbl_42485,asmbl_42486	none	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_477,blat.proc3825150.chain_481,blat.proc3825150.chain_482	6	blat.proc3825150.chain_480	1
scaffold_7	ends_in_intron	12053810	12053810	+	asmbl_50208	none	blat.proc3825168.chain_1829	1	STRG.9309.1,STRG.9309.2,Trinity_GG_22477_c0_g1_i4,blat.proc3825168.chain_1828,blat.proc3825168.chain_1830,blat.proc3825168.chain_1831	6
scaffold_23	alt_acceptor	1120015	1120016	+	asmbl_31304	none	STRG.25591.2,blat.proc3825176.chain_2552	2	STRG.25591.1,blat.proc3825176.chain_2551	2
scaffold_5	retained_intron	5972142	5972548	+	asmbl_45383	none	STRG.6011.1	1	blat.proc3825166.chain_2242	1
scaffold_3	retained_intron	17364750	17364900	-	asmbl_39550,asmbl_39556	none	blat.proc3825150.chain_175,blat.proc3825150.chain_183	2	blat.proc3825150.chain_179	1
scaffold_1	spliced_intron	18327108	18327318	+	asmbl_2550	none	STRG.1287.1,blat.proc3825164.chain_1405	2	blat.proc3825164.chain_1404	1
scaffold_1	ends_in_intron	4569709	4569709	-	asmbl_211	none	blat.proc3825148.chain_160	1	STRG.285.1,STRG.285.2,STRG.285.3,STRG.285.4,blat.proc3825148.chain_152,blat.proc3825148.chain_153,blat.proc3825148.chain_158,blat.proc3825148.chain_159	8
scaffold_28	ends_in_intron	2932647	2932647	-	asmbl_38110	none	Trinity_GG_16543_c2_g1_i1,blat.proc3825162.chain_2676	2	STRG.29489.2	1
scaffold_28	starts_in_intron	9117341	9117341	-	asmbl_38492	none	blat.proc3825162.chain_3136	1	STRG.29963.1,STRG.29963.3,blat.proc3825162.chain_3135,blat.proc3825162.chain_3137	4
scaffold_16	alt_acceptor	3995791	3995792	+	asmbl_16160	none	STRG.19208.2,blat.proc3825174.chain_98	2	STRG.19208.1,STRG.19208.3,blat.proc3825174.chain_100,blat.proc3825174.chain_99	4
scaffold_6	spliced_intron	4519219	4519479	-	asmbl_48328	none	STRG.7431.1,blat.proc3825150.chain_3571,blat.proc3825150.chain_3572	3	Trinity_GG_4180_c0_g1_i1,blat.proc3825150.chain_3570	2
scaffold_13	starts_in_intron	6817151	6817151	+	asmbl_10981	none	Trinity_GG_26080_c0_g1_i1,blat.proc3825172.chain_717	2	STRG.15971.1,blat.proc3825172.chain_716	2
scaffold_23	starts_in_intron	4101265	4101265	-	asmbl_30830	none	blat.proc3825160.chain_3030	1	STRG.25826.1	1
scaffold_19	spliced_intron	3559309	3561160	+	asmbl_21331	none	STRG.22045.1	1	STRG.22045.2,Trinity_GG_29503_c0_g1_i5,Trinity_GG_29503_c1_g1_i1,Trinity_GG_29503_c2_g1_i1,blat.proc3825174.chain_3074,blat.proc3825174.chain_3075,blat.proc3825174.chain_3079,blat.proc3825174.chain_3080	8
scaffold_13	alt_acceptor	4655375	4655376	+	asmbl_10821,asmbl_10822	none	STRG.15801.1,STRG.15801.2	2	STRG.15801.3,blat.proc3825172.chain_553,blat.proc3825172.chain_554	3
scaffold_12	retained_exon	9668732	9669967	+	asmbl_7871	none	STRG.14944.1	1	Trinity_GG_25536_c0_g1_i1,blat.proc3825170.chain_3436	2
scaffold_5	retained_intron	13316098	13316220	-	asmbl_44540	none	blat.proc3825150.chain_2764	1	blat.proc3825150.chain_2766	1
scaffold_16	spliced_intron	810169	810259	-	asmbl_16908,asmbl_16912	none	STRG.19064.1,STRG.19064.3,blat.proc3825158.chain_130	3	blat.proc3825158.chain_129,blat.proc3825158.chain_131,blat.proc3825158.chain_132	3
scaffold_1	alt_acceptor	19841731	19841732	+	asmbl_2600	none	STRG.1363.3,blat.proc3825164.chain_1482	2	STRG.1363.1,STRG.1363.2,blat.proc3825164.chain_1483	3
scaffold_27	ends_in_intron	3869959	3869959	+	asmbl_36225	none	STRG.28861.2,blat.proc3825178.chain_2046	2	blat.proc3825178.chain_2044	1
scaffold_11	spliced_intron	175992	176605	+	asmbl_5263,asmbl_5268,asmbl_5269	none	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	4	blat.proc3825170.chain_1809,blat.proc3825170.chain_1811	2
scaffold_10	retained_exon	4049896	4050689	+	asmbl_3101,asmbl_3102	none	STRG.12245.1,Trinity_GG_24107_c0_g1_i2,Trinity_GG_24107_c0_g1_i3,blat.proc3825170.chain_954,blat.proc3825170.chain_955	5	STRG.12245.2	1
scaffold_6	starts_in_intron	16594089	16594089	-	asmbl_49142	none	blat.proc3825152.chain_771	1	STRG.8385.1,STRG.8385.2,STRG.8385.3,blat.proc3825152.chain_770,blat.proc3825152.chain_772	5
scaffold_18	retained_intron	2149299	2149645	-	asmbl_19708,asmbl_19709	none	STRG.21114.1,STRG.21114.2,Trinity_GG_11834_c0_g1_i1,blat.proc3825158.chain_2087,blat.proc3825158.chain_2088	5	STRG.21114.3	1
scaffold_4	skipped_exon	7154144	7154943	+	asmbl_41466,asmbl_41467,asmbl_41469,asmbl_41471	none	STRG.4559.3,STRG.4559.4,STRG.4559.5,blat.proc3825166.chain_1028	4	STRG.4559.1,STRG.4559.2,blat.proc3825166.chain_1027	3
scaffold_26	ends_in_intron	9594392	9594392	-	asmbl_35788	none	Trinity_GG_15929_c0_g1_i1,blat.proc3825162.chain_1686	2	STRG.28509.1,Trinity_GG_15929_c0_g1_i3,blat.proc3825162.chain_1685	3
scaffold_2	spliced_intron	7242608	7242683	+	asmbl_24552,asmbl_24554,asmbl_24556,asmbl_24557	none	STRG.2055.1,blat.proc3825164.chain_2169,blat.proc3825164.chain_2171,blat.proc3825164.chain_2172,blat.proc3825164.chain_2173	5	blat.proc3825164.chain_2170	1
scaffold_18	alt_donor	7631668	7631669	-	asmbl_19959,asmbl_19960,asmbl_19962,asmbl_19967	none	STRG.21463.2,STRG.21463.4,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2391,blat.proc3825158.chain_2392,blat.proc3825158.chain_2393,blat.proc3825158.chain_2396	7	STRG.21463.3	1
scaffold_18	alt_donor	7554249	7554250	-	asmbl_19957	none	STRG.21458.3	1	STRG.21458.1,STRG.21458.2,blat.proc3825158.chain_2374	3
scaffold_25	alt_donor	7338595	7338596	+	asmbl_33666	none	STRG.27588.1,Trinity_GG_32501_c0_g1_i3,Trinity_GG_32501_c0_g1_i6,blat.proc3825178.chain_657,blat.proc3825178.chain_659	5	STRG.27588.2,STRG.27588.3,STRG.27588.4,blat.proc3825178.chain_656	4
scaffold_27	starts_in_intron	3013208	3013208	+	asmbl_36168	none	Trinity_GG_33210_c0_g2_i1,blat.proc3825178.chain_1876	2	STRG.28790.1	1
scaffold_2	retained_exon	15266470	15266612	+	asmbl_25002,asmbl_25006	none	STRG.2485.3,blat.proc3825164.chain_2606	2	blat.proc3825164.chain_2609	1
scaffold_9	alternate_exon	3663744	3663797	+	asmbl_53907	none	STRG.10971.1,Trinity_GG_23413_c0_g1_i4,blat.proc3825168.chain_3495	3	STRG.10971.4	1
scaffold_11	skipped_exon	6591255	6592422	-	asmbl_6726	none	STRG.13705.2	1	STRG.13705.1,blat.proc3825154.chain_2268,blat.proc3825154.chain_2269	3
scaffold_17	spliced_intron	8845886	8846064	+	asmbl_19023	none	STRG.20495.1,blat.proc3825174.chain_1353	2	STRG.20495.2,STRG.20495.3,Trinity_GG_28543_c0_g1_i6,blat.proc3825174.chain_1351,blat.proc3825174.chain_1355	5
scaffold_12	retained_exon	15679641	15679763	-	asmbl_9092,asmbl_9094,asmbl_9095	none	STRG.15358.1,STRG.15358.2,STRG.15358.3,blat.proc3825156.chain_212	4	STRG.15358.4,blat.proc3825156.chain_213	2
scaffold_23	retained_exon	1850702	1850809	+	asmbl_31361	none	STRG.25669.2,blat.proc3825176.chain_2626	2	STRG.25669.1	1
scaffold_12	alt_acceptor	13396701	13396702	-	asmbl_8945	none	STRG.15219.5	1	STRG.15219.3,blat.proc3825156.chain_10,blat.proc3825156.chain_12	3
scaffold_7	alt_acceptor	11412933	11412934	+	asmbl_50175	none	blat.proc3825168.chain_1793	1	STRG.9288.2	1
scaffold_2	ends_in_intron	3912279	3912279	-	asmbl_23022	none	blat.proc3825148.chain_1818	1	STRG.1830.1	1
scaffold_20	alt_donor	1624295	1624296	-	asmbl_25596	none	STRG.22899.1	1	STRG.22899.2,STRG.22899.3	2
scaffold_12	starts_in_intron	14268503	14268503	+	asmbl_8083	none	Trinity_GG_25686_c0_g1_i3,blat.proc3825170.chain_3705	2	STRG.15263.1,blat.proc3825170.chain_3703	2
scaffold_8	spliced_intron	9466234	9466322	-	asmbl_52035,asmbl_52036,asmbl_52037,asmbl_52039	none	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5	Trinity_GG_5708_c0_g1_i2,blat.proc3825152.chain_2502	2
scaffold_25	alt_acceptor	5158234	5158235	-	asmbl_34244,asmbl_34250	none	STRG.27443.1,blat.proc3825162.chain_807,blat.proc3825162.chain_808	3	STRG.27443.2,STRG.27443.3,blat.proc3825162.chain_809	3
scaffold_8	alt_donor	10027588	10027589	-	asmbl_52088	none	STRG.10258.1,blat.proc3825152.chain_2533	2	STRG.10258.2	1
scaffold_4	spliced_intron	6283224	6283378	-	asmbl_42666,asmbl_42667,asmbl_42669,asmbl_42671,asmbl_42672	none	STRG.4498.1,STRG.4498.2,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778,blat.proc3825150.chain_780	12	blat.proc3825150.chain_773	1
scaffold_16	alt_donor	14663271	14663272	-	asmbl_17489	none	STRG.19865.1,blat.proc3825158.chain_908	2	STRG.19865.2	1
scaffold_10	alt_acceptor	6526309	6526310	-	asmbl_4476	none	STRG.12478.2	1	STRG.12478.1,blat.proc3825154.chain_1017	2
scaffold_28	alternate_exon	5014755	5015660	+	asmbl_37559	none	Trinity_GG_33747_c0_g1_i3,blat.proc3825178.chain_2831	2	Trinity_GG_33747_c0_g2_i4,blat.proc3825178.chain_2832,blat.proc3825178.chain_2833,blat.proc3825178.chain_2834	4
scaffold_8	spliced_intron	6029233	6029335	+	asmbl_52926,asmbl_52927,asmbl_52929,asmbl_52930,asmbl_52931	none	blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2613,blat.proc3825168.chain_2614,blat.proc3825168.chain_2615	5	blat.proc3825168.chain_2609	1
scaffold_25	alt_donor	10043783	10043784	-	asmbl_34537	none	STRG.27803.1	1	STRG.27803.2	1
scaffold_6	starts_in_intron	8954757	8954757	+	asmbl_47189	none	blat.proc3825168.chain_201	1	STRG.7778.1,STRG.7778.2,blat.proc3825168.chain_198	3
scaffold_16	starts_in_intron	3780800	3780800	+	asmbl_16153	none	blat.proc3825174.chain_93	1	STRG.19187.1,blat.proc3825174.chain_92,blat.proc3825174.chain_94	3
scaffold_4	alt_donor	14590903	14590904	-	asmbl_43052	none	STRG.5077.3	1	STRG.5077.1,STRG.5077.2,blat.proc3825150.chain_1241	3
scaffold_8	ends_in_intron	4348348	4348348	+	asmbl_52840	none	Trinity_GG_22808_c0_g1_i1,blat.proc3825168.chain_2425	2	STRG.9918.1,STRG.9918.2,Trinity_GG_22808_c0_g1_i4	3
scaffold_10	ends_in_intron	3353346	3353346	-	asmbl_4195	none	Trinity_GG_6758_c0_g1_i1,blat.proc3825154.chain_687	2	STRG.12167.1,blat.proc3825154.chain_689	2
scaffold_17	alt_acceptor	13959161	13959162	+	asmbl_19368,asmbl_19371,asmbl_19372	none	STRG.20882.1,blat.proc3825174.chain_1771,blat.proc3825174.chain_1773,blat.proc3825174.chain_1774	4	STRG.20882.2,blat.proc3825174.chain_1775	2
scaffold_23	ends_in_intron	3512131	3512131	-	asmbl_30804	none	Trinity_GG_14435_c0_g1_i6,blat.proc3825160.chain_2977	2	STRG.25774.1,STRG.25774.2,blat.proc3825160.chain_2975,blat.proc3825160.chain_2976,blat.proc3825160.chain_2978,blat.proc3825160.chain_2979	6
scaffold_5	alternate_exon	16262204	16262295	+	asmbl_46070	none	STRG.6813.2,Trinity_GG_21022_c0_g1_i1,blat.proc3825166.chain_2972	3	STRG.6813.1,Trinity_GG_21022_c0_g1_i2,blat.proc3825166.chain_2973	3
scaffold_17	skipped_exon	9029724	9030964	-	asmbl_18141	none	STRG.20532.6	1	STRG.20532.1,STRG.20532.2,STRG.20532.4,STRG.20532.5,blat.proc3825158.chain_1576	5
scaffold_18	starts_in_intron	154923	154923	+	asmbl_20262	none	blat.proc3825174.chain_1880	1	STRG.20968.1,Trinity_GG_28838_c0_g1_i1,blat.proc3825174.chain_1879	3
scaffold_20	spliced_intron	7185087	7185348	-	asmbl_25885,asmbl_25886	none	STRG.23287.1,blat.proc3825160.chain_384	2	Trinity_GG_12999_c0_g1_i1,blat.proc3825160.chain_385	2
scaffold_11	spliced_intron	5501775	5501898	-	asmbl_6667	none	blat.proc3825154.chain_2130	1	STRG.13620.2,blat.proc3825154.chain_2127,blat.proc3825154.chain_2129	3
scaffold_9	spliced_intron	11837109	11837256	-	asmbl_55321,asmbl_55323	none	STRG.11501.1,STRG.11501.2,blat.proc3825152.chain_3671,blat.proc3825152.chain_3672	4	STRG.11501.3,blat.proc3825152.chain_3669	2
scaffold_2	alt_acceptor	8874377	8874378	+	asmbl_24653,asmbl_24654	none	STRG.2139.2,STRG.2139.3,blat.proc3825164.chain_2328,blat.proc3825164.chain_2331	4	STRG.2139.4	1
scaffold_12	alt_acceptor	11324729	11324730	+	asmbl_7959,asmbl_7960	none	STRG.15068.1,STRG.15068.2,Trinity_GG_25617_c0_g1_i1,Trinity_GG_25617_c0_g1_i2,blat.proc3825170.chain_3584,blat.proc3825170.chain_3585	6	STRG.15068.3	1
scaffold_22	alt_donor	10040347	10040348	-	asmbl_29576	none	STRG.25355.1,blat.proc3825160.chain_2459	2	blat.proc3825160.chain_2460	1
scaffold_15	alt_acceptor	1265032	1265033	+	asmbl_15000	none	STRG.17942.1	1	blat.proc3825172.chain_2635,blat.proc3825172.chain_2636	2
scaffold_19	retained_intron	11483966	11484174	-	asmbl_22412	none	blat.proc3825158.chain_3241	1	STRG.22486.1,STRG.22486.2,Trinity_GG_12512_c0_g1_i13,Trinity_GG_12512_c0_g1_i4,blat.proc3825158.chain_3239,blat.proc3825158.chain_3240,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3248	9
scaffold_13	starts_in_intron	3611366	3611366	-	asmbl_9558	none	blat.proc3825156.chain_565	1	STRG.15680.2,blat.proc3825156.chain_564,blat.proc3825156.chain_566	3
scaffold_28	starts_in_intron	5612215	5612215	-	asmbl_38298	none	STRG.29697.4,blat.proc3825162.chain_2898	2	STRG.29697.1,STRG.29697.2,STRG.29697.3,STRG.29697.6,Trinity_GG_16664_c0_g1_i8,Trinity_GG_16664_c0_g1_i9,blat.proc3825162.chain_2897,blat.proc3825162.chain_2899,blat.proc3825162.chain_2901,blat.proc3825162.chain_2902	10
scaffold_1	alternate_exon	20342580	20345835	+	asmbl_2625	none	blat.proc3825164.chain_1591	1	STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593	5
scaffold_24	retained_intron	10782528	10782651	-	asmbl_33219	none	blat.proc3825162.chain_367	1	STRG.27043.1,blat.proc3825162.chain_368,blat.proc3825162.chain_369,blat.proc3825162.chain_370	4
scaffold_3	spliced_intron	17362106	17362259	-	asmbl_39547,asmbl_39548,asmbl_39549,asmbl_39550,asmbl_39554	none	STRG.3971.1,STRG.3971.2,STRG.3971.4,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_178,blat.proc3825150.chain_181,blat.proc3825150.chain_185	8	STRG.3971.3,blat.proc3825150.chain_177,blat.proc3825150.chain_179,blat.proc3825150.chain_180,blat.proc3825150.chain_182,blat.proc3825150.chain_183,blat.proc3825150.chain_184	7
scaffold_22	alternate_exon	8189260	8192811	-	asmbl_29455	none	STRG.25169.1,blat.proc3825160.chain_2321	2	STRG.25169.2	1
scaffold_8	spliced_intron	11277835	11278003	-	asmbl_52145,asmbl_52146,asmbl_52147,asmbl_52148	none	STRG.10347.1,STRG.10347.2,STRG.10347.3,blat.proc3825152.chain_2593,blat.proc3825152.chain_2594,blat.proc3825152.chain_2596	6	Trinity_GG_5759_c0_g1_i4,blat.proc3825152.chain_2595	2
scaffold_14	alt_donor	2389115	2389116	-	asmbl_12949	none	STRG.16855.1	1	STRG.16855.2,STRG.16855.3	2
scaffold_15	retained_intron	12434240	12434471	+	asmbl_15571	none	blat.proc3825172.chain_3344	1	STRG.18701.1,Trinity_GG_27574_c0_g1_i7,blat.proc3825172.chain_3337,blat.proc3825172.chain_3338,blat.proc3825172.chain_3339,blat.proc3825172.chain_3340,blat.proc3825172.chain_3341,blat.proc3825172.chain_3342,blat.proc3825172.chain_3343	9
scaffold_1	alt_acceptor	12109032	12109033	+	asmbl_2176	none	STRG.826.2,blat.proc3825164.chain_954	2	Trinity_GG_17804_c0_g1_i1,blat.proc3825164.chain_951,blat.proc3825164.chain_953	3
scaffold_11	starts_in_intron	15836219	15836219	+	asmbl_6139	none	blat.proc3825170.chain_2799	1	STRG.14321.1,STRG.14321.2,STRG.14321.3,blat.proc3825170.chain_2797,blat.proc3825170.chain_2798,blat.proc3825170.chain_2800	6
scaffold_14	alternate_exon	14764603	14764630	+	asmbl_12560	none	STRG.17739.1,Trinity_GG_27026_c0_g1_i1,blat.proc3825172.chain_2404	3	STRG.17739.2,Trinity_GG_27026_c0_g1_i2,blat.proc3825172.chain_2403	3
scaffold_340	spliced_intron	2802	2919	+	asmbl_41014	none	STRG.30295.1	1	STRG.30295.4,Trinity_GG_34083_c0_g1_i8,blat.proc3825178.chain_3395	3
scaffold_17	retained_intron	10048773	10050204	+	asmbl_19160	none	STRG.20618.3,Trinity_GG_28608_c0_g1_i3,Trinity_GG_28608_c1_g1_i1,blat.proc3825174.chain_1498,blat.proc3825174.chain_1501	5	STRG.20618.1,STRG.20618.2,blat.proc3825174.chain_1497	3
scaffold_26	spliced_intron	9774294	9774402	+	asmbl_35264	none	STRG.28516.6	1	STRG.28516.4,STRG.28516.5,Trinity_GG_33091_c0_g1_i3,blat.proc3825178.chain_1653	4
scaffold_4	alt_acceptor	9978172	9978173	+	asmbl_41632	none	STRG.4757.2	1	STRG.4757.1	1
scaffold_4	alt_donor	1332449	1332450	-	asmbl_42366,asmbl_42368,asmbl_42369,asmbl_42370	none	STRG.4173.2,STRG.4173.4,blat.proc3825150.chain_392,blat.proc3825150.chain_393,blat.proc3825150.chain_394,blat.proc3825150.chain_395	6	STRG.4173.3	1
scaffold_18	starts_in_intron	372253	372253	-	asmbl_19581	none	blat.proc3825158.chain_1985	1	STRG.20990.1,blat.proc3825158.chain_1986,blat.proc3825158.chain_1989,blat.proc3825158.chain_1990	4
scaffold_3	spliced_intron	17145299	17145473	+	asmbl_40654,asmbl_40658	none	STRG.3958.3,blat.proc3825166.chain_458	2	STRG.3958.2,STRG.3958.4,Trinity_GG_19534_c0_g2_i1	3
scaffold_9	alt_donor	17743878	17743879	+	asmbl_54641,asmbl_54645	none	STRG.11863.3,blat.proc3825170.chain_565	2	STRG.11863.1,STRG.11863.2,Trinity_GG_23880_c0_g1_i6,blat.proc3825170.chain_563,blat.proc3825170.chain_564,blat.proc3825170.chain_566,blat.proc3825170.chain_567,blat.proc3825170.chain_569	8
scaffold_8	retained_exon	10586224	10586334	-	asmbl_52112	none	STRG.10293.2	1	STRG.10293.1,blat.proc3825152.chain_2488	2
scaffold_10	alt_acceptor	11969822	11969823	+	asmbl_3508,asmbl_3509,asmbl_3510,asmbl_3515,asmbl_3516	none	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.6,Trinity_GG_24389_c0_g1_i5,blat.proc3825170.chain_1447	6	STRG.12838.5	1
scaffold_23	alt_donor	2415279	2415280	+	asmbl_31405,asmbl_31406	none	STRG.25716.2,STRG.25716.3	2	STRG.25716.4,blat.proc3825176.chain_2677	2
scaffold_15	skipped_exon	8796077	8796511	-	asmbl_14354,asmbl_14355	none	STRG.18424.3,blat.proc3825156.chain_3311	2	STRG.18424.1,STRG.18424.2,blat.proc3825156.chain_3313,blat.proc3825156.chain_3314	4
scaffold_5	starts_in_intron	18264478	18264478	+	asmbl_46243,asmbl_46244	none	blat.proc3825166.chain_3185,blat.proc3825166.chain_3186	2	STRG.6968.1,STRG.6968.2,STRG.6968.5,blat.proc3825166.chain_3184,blat.proc3825166.chain_3187,blat.proc3825166.chain_3188,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	8
scaffold_12	alt_donor	2272525	2272526	-	asmbl_8320	none	STRG.14491.1,blat.proc3825154.chain_2987	2	STRG.14491.2	1
scaffold_9	spliced_intron	6903754	6903877	-	asmbl_55087,asmbl_55090	none	STRG.11203.1,blat.proc3825152.chain_3389,blat.proc3825152.chain_3393	3	STRG.11203.2,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3392	4
scaffold_1	retained_intron	5705379	5705535	+	asmbl_1755,asmbl_1757	none	blat.proc3825164.chain_497,blat.proc3825164.chain_498	2	STRG.372.1,blat.proc3825164.chain_496,blat.proc3825164.chain_500	3
scaffold_1	alt_donor	9254163	9254164	+	asmbl_1969	none	STRG.619.4,Trinity_GG_17679_c0_g1_i4,blat.proc3825164.chain_723	3	STRG.619.3,Trinity_GG_17679_c0_g1_i3,blat.proc3825164.chain_721	3
scaffold_2	retained_intron	891608	892306	+	asmbl_24136,asmbl_24137	none	STRG.1566.1,STRG.1566.3,Trinity_GG_18212_c0_g1_i1,Trinity_GG_18212_c0_g1_i2,blat.proc3825164.chain_1723,blat.proc3825164.chain_1724,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730	8	STRG.1566.2,STRG.1566.4,STRG.1566.5,blat.proc3825164.chain_1726,blat.proc3825164.chain_1731	5
scaffold_20	alt_acceptor	12074725	12074726	-	asmbl_26214,asmbl_26216,asmbl_26217,asmbl_26218	none	STRG.23706.1,blat.proc3825160.chain_685,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_688	5	STRG.23706.2	1
scaffold_23	spliced_intron	2038927	2039048	+	asmbl_31373,asmbl_31374	none	STRG.25686.1,blat.proc3825176.chain_2601,blat.proc3825176.chain_2602	3	blat.proc3825176.chain_2603	1
scaffold_8	spliced_intron	17839229	17839334	+	asmbl_53514	none	STRG.10692.1,Trinity_GG_23208_c0_g1_i3,blat.proc3825168.chain_3144	3	Trinity_GG_23208_c0_g1_i1,blat.proc3825168.chain_3143	2
scaffold_17	starts_in_intron	8845714	8845714	+	asmbl_19028	none	STRG.20495.3	1	STRG.20495.1,STRG.20495.2,blat.proc3825174.chain_1351,blat.proc3825174.chain_1353	4
scaffold_14	spliced_intron	12824418	12824705	-	asmbl_13614,asmbl_13615,asmbl_13616	none	STRG.17598.1,STRG.17598.2,STRG.17598.4,blat.proc3825156.chain_2458,blat.proc3825156.chain_2464	5	blat.proc3825156.chain_2461	1
scaffold_22	spliced_intron	647867	648211	+	asmbl_29875	none	STRG.24715.1,Trinity_GG_30976_c0_g1_i3,blat.proc3825176.chain_1841	3	STRG.24715.2,Trinity_GG_30976_c0_g1_i1,blat.proc3825176.chain_1842	3
scaffold_17	starts_in_intron	8062371	8062371	+	asmbl_18934	none	Trinity_GG_28496_c2_g1_i1,blat.proc3825174.chain_1272	2	STRG.20430.1,blat.proc3825174.chain_1270	2
scaffold_7	alt_donor	8296344	8296345	-	asmbl_50996	none	STRG.9066.2,blat.proc3825152.chain_1452	2	STRG.9066.1,STRG.9066.4,blat.proc3825152.chain_1454,blat.proc3825152.chain_1457	4
scaffold_10	starts_in_intron	5488642	5488642	+	asmbl_3173	none	STRG.12380.2,blat.proc3825170.chain_981	2	STRG.12380.1,blat.proc3825170.chain_980	2
scaffold_5	alt_acceptor	10539191	10539192	-	asmbl_44363,asmbl_44364,asmbl_44367	none	STRG.6340.1,Trinity_GG_3563_c0_g1_i4,Trinity_GG_3563_c0_g1_i7,blat.proc3825150.chain_2535,blat.proc3825150.chain_2537	5	STRG.6340.3,STRG.6340.4,blat.proc3825150.chain_2538	3
scaffold_13	alt_acceptor	909745	909746	-	asmbl_9376,asmbl_9380,asmbl_9381,asmbl_9382	none	STRG.15470.1,STRG.15470.3,STRG.15470.5,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271,blat.proc3825156.chain_272	8	STRG.15470.4,STRG.15470.6	2
scaffold_26	alternate_exon	5160405	5160433	+	asmbl_34968	none	STRG.28222.2,Trinity_GG_32897_c0_g1_i2,blat.proc3825178.chain_1293	3	STRG.28222.1,Trinity_GG_32897_c0_g1_i1,blat.proc3825178.chain_1292	3
scaffold_19	starts_in_intron	13284499	13284499	-	asmbl_22638	none	Trinity_GG_12623_c0_g1_i3,blat.proc3825158.chain_3504	2	STRG.22650.1,blat.proc3825158.chain_3503	2
scaffold_6	spliced_intron	7185172	7185279	-	asmbl_48480	none	STRG.7624.2,blat.proc3825150.chain_3701	2	STRG.7624.1,blat.proc3825150.chain_3700	2
scaffold_5	retained_exon	4683536	4683961	-	asmbl_43989,asmbl_43992,asmbl_43993	none	blat.proc3825150.chain_2075,blat.proc3825150.chain_2078,blat.proc3825150.chain_2081	3	STRG.5929.4,blat.proc3825150.chain_2080,blat.proc3825150.chain_2084	3
scaffold_27	retained_exon	1729172	1729204	-	asmbl_36783	none	STRG.28661.1,blat.proc3825162.chain_1915	2	STRG.28661.2,blat.proc3825162.chain_1916	2
scaffold_16	retained_intron	7216868	7217206	-	asmbl_17169,asmbl_17173,asmbl_17176	none	STRG.19399.1,STRG.19399.2,Trinity_GG_10855_c0_g1_i8,blat.proc3825158.chain_478	4	STRG.19399.3	1
scaffold_22	spliced_intron	214832	215205	+	asmbl_29819,asmbl_29821,asmbl_29822,asmbl_29823	none	STRG.24676.1,STRG.24676.2,STRG.24676.3,blat.proc3825176.chain_1807,blat.proc3825176.chain_1808	5	Trinity_GG_30960_c0_g1_i4,blat.proc3825176.chain_1806	2
scaffold_10	retained_intron	11093689	11093875	+	asmbl_3447	none	STRG.12775.1,Trinity_GG_24352_c0_g1_i2,blat.proc3825170.chain_1369	3	STRG.12775.2,Trinity_GG_24352_c0_g1_i1,blat.proc3825170.chain_1368	3
scaffold_11	alternate_exon	8381442	8381741	+	asmbl_5756	none	STRG.13855.2,blat.proc3825170.chain_2357	2	STRG.13855.1,blat.proc3825170.chain_2358	2
scaffold_6	alt_acceptor	8643315	8643316	+	asmbl_47170,asmbl_47171,asmbl_47172	none	STRG.7754.2,STRG.7754.3,blat.proc3825168.chain_189	3	STRG.7754.1,blat.proc3825168.chain_190	2
scaffold_21	starts_in_intron	10983471	10983471	+	asmbl_28911	none	blat.proc3825176.chain_1665	1	STRG.24578.1,blat.proc3825176.chain_1667	2
scaffold_9	alt_acceptor	7796516	7796517	+	asmbl_54138,asmbl_54139,asmbl_54140	none	blat.proc3825170.chain_70,blat.proc3825170.chain_71,blat.proc3825170.chain_72	3	blat.proc3825170.chain_74	1
scaffold_9	retained_exon	17659940	17659977	-	asmbl_55668,asmbl_55670	none	STRG.11848.2,STRG.11848.3,Trinity_GG_6559_c0_g1_i1,Trinity_GG_6559_c0_g1_i4,blat.proc3825154.chain_338,blat.proc3825154.chain_339	6	STRG.11848.1,Trinity_GG_6559_c0_g1_i3,blat.proc3825154.chain_337	3
scaffold_22	retained_exon	215206	215343	+	asmbl_29821,asmbl_29822,asmbl_29823	none	STRG.24676.1,STRG.24676.2,blat.proc3825176.chain_1807,blat.proc3825176.chain_1808	4	STRG.24676.5	1
scaffold_2	retained_intron	15267438	15267758	+	asmbl_24998	none	Trinity_GG_18659_c3_g1_i1,blat.proc3825164.chain_2624	2	blat.proc3825164.chain_2603,blat.proc3825164.chain_2604	2
scaffold_11	retained_intron	8085021	8085159	-	asmbl_6837	none	Trinity_GG_7739_c0_g1_i1,blat.proc3825154.chain_2387	2	STRG.13817.1,Trinity_GG_7739_c0_g1_i2,blat.proc3825154.chain_2388	3
scaffold_17	starts_in_intron	9984272	9984272	+	asmbl_19141	none	blat.proc3825174.chain_1493	1	blat.proc3825174.chain_1488,blat.proc3825174.chain_1489	2
scaffold_11	starts_in_intron	172395	172395	+	asmbl_5259	none	STRG.13244.3	1	STRG.13244.1,STRG.13244.2,blat.proc3825170.chain_1818,blat.proc3825170.chain_1820	4
scaffold_4	retained_intron	17805603	17806025	+	asmbl_42074	none	blat.proc3825166.chain_1695	1	blat.proc3825166.chain_1696	1
scaffold_12	skipped_exon	3329233	3331370	+	asmbl_7551	none	STRG.14555.4	1	STRG.14555.1,STRG.14555.2,STRG.14555.3,STRG.14555.5,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i2,Trinity_GG_25356_c0_g1_i3,blat.proc3825170.chain_3110,blat.proc3825170.chain_3112	9
scaffold_2	retained_intron	12645103	12645138	-	asmbl_23469	none	STRG.2317.2	1	STRG.2317.1	1
scaffold_13	alt_acceptor	3748422	3748423	+	asmbl_10741	none	Trinity_GG_25936_c0_g1_i1,blat.proc3825172.chain_434	2	STRG.15702.1,STRG.15702.2,Trinity_GG_25936_c0_g1_i4,blat.proc3825172.chain_435	4
scaffold_6	retained_intron	15944871	15944986	+	asmbl_47679,asmbl_47682	none	STRG.8324.1,STRG.8324.4	2	blat.proc3825152.chain_740	1
scaffold_26	alt_acceptor	222715	222716	-	asmbl_35381	none	STRG.27847.2	1	STRG.27847.1,Trinity_GG_15625_c0_g1_i1,blat.proc3825162.chain_1196	3
scaffold_15	alt_acceptor	9665939	9665940	-	asmbl_14393,asmbl_14395	none	STRG.18477.1,STRG.18477.3,blat.proc3825156.chain_3351	3	STRG.18477.2	1
scaffold_19	spliced_intron	11460464	11460646	-	asmbl_22387,asmbl_22389	none	STRG.22479.1,blat.proc3825158.chain_3198,blat.proc3825158.chain_3200	3	blat.proc3825158.chain_3199,blat.proc3825158.chain_3201	2
scaffold_3	alt_acceptor	16072619	16072620	+	asmbl_40604,asmbl_40605	none	STRG.3889.1,STRG.3889.2,blat.proc3825166.chain_374,blat.proc3825166.chain_376	4	STRG.3889.3	1
scaffold_13	starts_in_intron	665283	665283	-	asmbl_9367	none	Trinity_GG_8668_c0_g1_i5,blat.proc3825156.chain_315	2	STRG.15453.1,STRG.15453.2,Trinity_GG_8668_c0_g1_i3,Trinity_GG_8668_c0_g1_i4,blat.proc3825156.chain_312,blat.proc3825156.chain_313	6
scaffold_13	alt_donor	2277260	2277261	-	asmbl_9439	none	STRG.15548.1,blat.proc3825156.chain_398	2	STRG.15548.5	1
scaffold_8	starts_in_intron	11830363	11830363	+	asmbl_53271	none	Trinity_GG_23113_c0_g1_i1,blat.proc3825168.chain_2981	2	STRG.10387.2,blat.proc3825168.chain_2982	2
scaffold_11	spliced_intron	2061239	2061594	+	asmbl_5356	none	STRG.13366.1	1	STRG.13366.2,STRG.13366.3,blat.proc3825170.chain_1922,blat.proc3825170.chain_1924	4
scaffold_27	retained_intron	390464	390593	-	asmbl_36687	none	blat.proc3825162.chain_1811	1	STRG.28565.2	1
scaffold_8	alt_acceptor	16043939	16043940	-	asmbl_52354	none	STRG.10590.2,blat.proc3825152.chain_2825	2	STRG.10590.1,blat.proc3825152.chain_2824	2
scaffold_13	alt_acceptor	366417	366418	-	asmbl_9318	none	STRG.15442.4	1	STRG.15442.1,Trinity_GG_8663_c0_g1_i6,blat.proc3825156.chain_295	3
scaffold_6	alt_donor	13918577	13918578	-	asmbl_48959	none	STRG.8139.3	1	Trinity_GG_4635_c1_g1_i2,blat.proc3825152.chain_571	2
scaffold_7	retained_intron	8296258	8296345	-	asmbl_50998	none	Trinity_GG_5116_c0_g1_i4,blat.proc3825152.chain_1455	2	STRG.9066.2,STRG.9066.3,blat.proc3825152.chain_1452,blat.proc3825152.chain_1453	4
scaffold_20	skipped_exon	11085396	11086156	-	asmbl_26138	none	Trinity_GG_13173_c0_g1_i2,blat.proc3825160.chain_725	2	STRG.23625.1,Trinity_GG_13173_c0_g1_i1,blat.proc3825160.chain_726	3
scaffold_3	starts_in_intron	3730094	3730094	+	asmbl_39965	none	Trinity_GG_19056_c1_g1_i1,blat.proc3825164.chain_3326	2	STRG.3098.1	1
scaffold_24	spliced_intron	7175760	7176154	-	asmbl_33016	none	STRG.26767.2	1	STRG.26767.1	1
scaffold_9	retained_exon	645343	645735	+	asmbl_53783	none	STRG.10793.2	1	STRG.10793.3	1
scaffold_24	alt_donor	3444772	3444773	-	asmbl_32831,asmbl_32833	none	STRG.26548.4,blat.proc3825160.chain_3622	2	STRG.26548.3	1
scaffold_20	retained_exon	2403443	2403500	+	asmbl_26487	none	STRG.22972.2,blat.proc3825176.chain_156	2	STRG.22972.1,blat.proc3825176.chain_157	2
scaffold_26	skipped_exon	5744770	5745955	+	asmbl_35032,asmbl_35033,asmbl_35035	none	STRG.28271.1,Trinity_GG_32933_c0_g1_i2,blat.proc3825178.chain_1357,blat.proc3825178.chain_1358	4	STRG.28271.2,blat.proc3825178.chain_1356	2
scaffold_3	alt_acceptor	19805436	19805437	+	asmbl_40772,asmbl_40773,asmbl_40774,asmbl_40776	none	STRG.4097.1,STRG.4097.2,STRG.4097.3,blat.proc3825166.chain_568,blat.proc3825166.chain_569	5	STRG.4097.4	1
scaffold_4	ends_in_intron	13108460	13108460	-	asmbl_42970	none	Trinity_GG_2762_c0_g1_i2,blat.proc3825150.chain_1146	2	STRG.4954.1,blat.proc3825150.chain_1145	2
scaffold_3	starts_in_intron	14184321	14184321	-	asmbl_39328,asmbl_39329	none	Trinity_GG_2073_c0_g1_i3,Trinity_GG_2073_c0_g1_i7	2	STRG.3761.1,STRG.3761.2,STRG.3761.3,STRG.3761.4,STRG.3761.5,blat.proc3825148.chain_3664,blat.proc3825148.chain_3666,blat.proc3825148.chain_3668	8
scaffold_12	skipped_exon	9667623	9668731	+	asmbl_7871	none	STRG.14944.1	1	STRG.14944.2,Trinity_GG_25536_c0_g1_i1,Trinity_GG_25536_c0_g1_i3,blat.proc3825170.chain_3434,blat.proc3825170.chain_3436	5
scaffold_23	retained_intron	1682272	1682293	+	asmbl_31351	none	Trinity_GG_31475_c0_g1_i1	1	STRG.25650.2	1
scaffold_5	spliced_intron	9085338	9085435	+	asmbl_45599,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6	blat.proc3825166.chain_2474,blat.proc3825166.chain_2476	2
scaffold_22	retained_intron	8241615	8241803	-	asmbl_29466,asmbl_29468	none	STRG.25182.1,STRG.25182.3,blat.proc3825160.chain_2328	3	STRG.25182.2,blat.proc3825160.chain_2327	2
scaffold_18	retained_intron	5988273	5988742	+	asmbl_20638,asmbl_20646	none	blat.proc3825174.chain_2286,blat.proc3825174.chain_2291,blat.proc3825174.chain_2292	3	blat.proc3825174.chain_2288,blat.proc3825174.chain_2289,blat.proc3825174.chain_2290,blat.proc3825174.chain_2293	4
scaffold_4	spliced_intron	16311395	16311679	-	asmbl_43150,asmbl_43151	none	STRG.5199.1,blat.proc3825150.chain_1332,blat.proc3825150.chain_1333	3	blat.proc3825150.chain_1334	1
scaffold_4	skipped_exon	7032456	7034797	+	asmbl_41448	none	STRG.4540.1	1	STRG.4540.2	1
scaffold_14	retained_intron	2600144	2600258	-	asmbl_12965	none	STRG.16868.1,Trinity_GG_9451_c0_g1_i1,blat.proc3825156.chain_1685	3	STRG.16868.2	1
scaffold_13	alt_donor	6396106	6396107	+	asmbl_10924,asmbl_10930	none	STRG.15929.3,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	4	STRG.15929.2,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_655	3
scaffold_8	ends_in_intron	9587234	9587234	+	asmbl_53088,asmbl_53089	none	blat.proc3825168.chain_2773,blat.proc3825168.chain_2776	2	STRG.10216.3,blat.proc3825168.chain_2772,blat.proc3825168.chain_2775	3
scaffold_5	alt_donor	11631085	11631086	-	asmbl_44418	none	blat.proc3825150.chain_2643	1	blat.proc3825150.chain_2640	1
scaffold_2	starts_in_intron	19773282	19773282	+	asmbl_25289	none	blat.proc3825164.chain_3071	1	STRG.2827.1,STRG.2827.2,blat.proc3825164.chain_3072,blat.proc3825164.chain_3073,blat.proc3825164.chain_3074	5
scaffold_26	alt_acceptor	3268091	3268092	+	asmbl_34770	none	STRG.28011.3	1	STRG.28011.2,blat.proc3825178.chain_985,blat.proc3825178.chain_986	3
scaffold_12	skipped_exon	8915537	8916290	+	asmbl_7839	none	STRG.14900.2	1	STRG.14900.1,blat.proc3825170.chain_3475	2
scaffold_4	alt_acceptor	4690554	4690555	+	asmbl_41296,asmbl_41301,asmbl_41302	none	STRG.4379.1,blat.proc3825166.chain_818,blat.proc3825166.chain_820	3	blat.proc3825166.chain_813,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_819	4
scaffold_58	starts_in_intron	4970	4970	+	asmbl_46605	none	Trinity_GG_33962_c0_g1_i1,blat.proc3825178.chain_3207	2	STRG.30078.1	1
scaffold_17	ends_in_intron	12371056	12371056	-	asmbl_18330	none	blat.proc3825158.chain_1713	1	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4,blat.proc3825158.chain_1711	5
scaffold_8	spliced_intron	18108227	18108429	+	asmbl_53532	none	STRG.10716.1,Trinity_GG_23260_c0_g1_i1,blat.proc3825168.chain_3251	3	STRG.10716.2,Trinity_GG_23260_c0_g1_i3,blat.proc3825168.chain_3249	3
scaffold_14	starts_in_intron	11093271	11093271	+	asmbl_12362	none	Trinity_GG_26905_c0_g1_i1,blat.proc3825172.chain_2191	2	STRG.17442.1,blat.proc3825172.chain_2190	2
scaffold_27	alt_acceptor	3019973	3019974	+	asmbl_36162	none	STRG.28790.1	1	STRG.28790.2	1
scaffold_21	spliced_intron	5110609	5110692	-	asmbl_27605	none	STRG.24048.1,blat.proc3825160.chain_1177	2	blat.proc3825160.chain_1178	1
scaffold_14	spliced_intron	11764873	11765001	-	asmbl_13531	none	STRG.17521.1,blat.proc3825156.chain_2324	2	blat.proc3825156.chain_2323	1
scaffold_5	starts_in_intron	10382487	10382487	-	asmbl_44353,asmbl_44356	none	blat.proc3825150.chain_2516,blat.proc3825150.chain_2518	2	STRG.6339.1,STRG.6339.2	2
scaffold_1	starts_in_intron	12775584	12775584	+	asmbl_2255	none	STRG.898.1,blat.proc3825164.chain_1087	2	blat.proc3825164.chain_1086	1
scaffold_14	alternate_exon	10716647	10716697	+	asmbl_12343,asmbl_12344	none	STRG.17426.1,Trinity_GG_26881_c0_g1_i1,Trinity_GG_26881_c0_g1_i2,blat.proc3825172.chain_2152,blat.proc3825172.chain_2153	5	STRG.17426.2	1
scaffold_4	spliced_intron	3383834	3384084	+	asmbl_41189,asmbl_41192,asmbl_41193,asmbl_41194	none	STRG.4276.1,STRG.4276.3,blat.proc3825166.chain_745,blat.proc3825166.chain_746,blat.proc3825166.chain_749	5	blat.proc3825166.chain_747	1
scaffold_5	alt_acceptor	16206376	16206377	+	asmbl_46062	none	STRG.6809.2	1	STRG.6809.1,blat.proc3825166.chain_2951,blat.proc3825166.chain_2953,blat.proc3825166.chain_2954	4
scaffold_21	retained_intron	233295	233468	-	asmbl_27280	none	blat.proc3825160.chain_838	1	STRG.23731.1,blat.proc3825160.chain_839	2
scaffold_5	alt_acceptor	5738077	5738078	+	asmbl_45361,asmbl_45366,asmbl_45367	none	STRG.5992.1,STRG.5992.4,blat.proc3825166.chain_2131,blat.proc3825166.chain_2135	4	STRG.5992.2,STRG.5992.5,STRG.5992.6,blat.proc3825166.chain_2134	4
scaffold_11	retained_intron	8790350	8790437	-	asmbl_6875	none	STRG.13904.3	1	STRG.13904.2	1
scaffold_16	retained_intron	125457	125614	+	asmbl_15998,asmbl_15999	none	Trinity_GG_27742_c0_g1_i1,Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3682,blat.proc3825172.chain_3684	4	STRG.19007.4	1
scaffold_26	alt_acceptor	7588367	7588368	+	asmbl_35132	none	STRG.28394.2	1	STRG.28394.1	1
scaffold_21	spliced_intron	2441436	2441601	+	asmbl_28390	none	STRG.23868.1	1	Trinity_GG_30491_c0_g1_i2,blat.proc3825176.chain_1003	2
scaffold_6	spliced_intron	13167852	13167934	-	asmbl_48887,asmbl_48888	none	blat.proc3825152.chain_470,blat.proc3825152.chain_471	2	STRG.8074.2,blat.proc3825152.chain_476,blat.proc3825152.chain_477	3
scaffold_2	alt_donor	17923147	17923148	+	asmbl_25202	none	STRG.2680.1,blat.proc3825164.chain_2954	2	STRG.2680.2,blat.proc3825164.chain_2955	2
scaffold_4	alt_acceptor	5106676	5106677	-	asmbl_42557	none	STRG.4407.2	1	STRG.4407.1,blat.proc3825150.chain_626	2
scaffold_23	alternate_exon	4899126	4899315	+	asmbl_31534	none	Trinity_GG_31591_c0_g1_i2,blat.proc3825176.chain_2819	2	STRG.25884.1,STRG.25884.4,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817	6
scaffold_7	alternate_exon	4045044	4045550	-	asmbl_50850	none	STRG.8803.1	1	STRG.8803.3,blat.proc3825152.chain_1276	2
scaffold_18	starts_in_intron	3791553	3791553	-	asmbl_19775	none	blat.proc3825158.chain_2171	1	STRG.21197.1,STRG.21197.2,STRG.21197.3,blat.proc3825158.chain_2173,blat.proc3825158.chain_2176,blat.proc3825158.chain_2177,blat.proc3825158.chain_2178,blat.proc3825158.chain_2179	8
scaffold_18	alt_acceptor	7868806	7868807	+	asmbl_20798,asmbl_20799,asmbl_20800,asmbl_20801,asmbl_20806,asmbl_20808	none	STRG.21488.1,STRG.21488.2,STRG.21488.3,STRG.21488.4,STRG.21488.5,STRG.21488.6,blat.proc3825174.chain_2452,blat.proc3825174.chain_2454,blat.proc3825174.chain_2456,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	11	STRG.21488.7,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2457	4
scaffold_15	starts_in_intron	4141527	4141527	-	asmbl_14133	none	blat.proc3825156.chain_3004	1	STRG.18159.1,blat.proc3825156.chain_3005,blat.proc3825156.chain_3006	3
scaffold_7	starts_in_intron	12278832	12278832	+	asmbl_50240	none	Trinity_GG_22453_c0_g1_i2,blat.proc3825168.chain_1765	2	STRG.9323.1,blat.proc3825168.chain_1767	2
scaffold_6	spliced_intron	7173679	7173782	+	asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47057,asmbl_47058	none	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84	6	blat.proc3825168.chain_85	1
scaffold_28	retained_intron	7234548	7235090	+	asmbl_37642	none	STRG.29785.2,Trinity_GG_33804_c1_g1_i1,blat.proc3825178.chain_2931,blat.proc3825178.chain_2933	4	STRG.29785.1,blat.proc3825178.chain_2930	2
scaffold_13	alt_donor	3733773	3733774	+	asmbl_10734	none	STRG.15695.1,blat.proc3825172.chain_441	2	STRG.15695.2,blat.proc3825172.chain_447	2
scaffold_23	retained_intron	5339139	5340317	-	asmbl_30907,asmbl_30910,asmbl_30911,asmbl_30912	none	STRG.25911.2,Trinity_GG_14511_c0_g1_i7,blat.proc3825160.chain_3097,blat.proc3825160.chain_3098,blat.proc3825160.chain_3102	5	STRG.25911.1,blat.proc3825160.chain_3100,blat.proc3825160.chain_3101	3
scaffold_1	spliced_intron	15888475	15889037	+	asmbl_2457	none	STRG.1119.3	1	STRG.1119.2,blat.proc3825164.chain_1260	2
scaffold_14	retained_intron	11139409	11139486	-	asmbl_13450	none	blat.proc3825156.chain_2250	1	STRG.17450.2,blat.proc3825156.chain_2251	2
scaffold_13	alt_acceptor	3528450	3528451	+	asmbl_10705	none	STRG.15676.2	1	STRG.15676.1,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_363,blat.proc3825172.chain_364	5
scaffold_2	alt_donor	893116	893117	+	asmbl_24136,asmbl_24137,asmbl_24138,asmbl_24139,asmbl_24143,asmbl_24144,asmbl_24145	none	STRG.1566.1,STRG.1566.2,STRG.1566.3,STRG.1566.4,STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725,blat.proc3825164.chain_1726,blat.proc3825164.chain_1727,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730,blat.proc3825164.chain_1731	12	Trinity_GG_18212_c0_g2_i7,blat.proc3825164.chain_1728	2
scaffold_19	starts_in_intron	10223282	10223282	+	asmbl_21629	none	Trinity_GG_29631_c1_g1_i1,blat.proc3825174.chain_3300	2	STRG.22402.1,STRG.22402.2,STRG.22402.3,blat.proc3825174.chain_3297,blat.proc3825174.chain_3298,blat.proc3825174.chain_3299	6
scaffold_6	alternate_exon	12632330	12632548	+	asmbl_47423	none	STRG.8022.2,blat.proc3825168.chain_423	2	STRG.8022.1	1
scaffold_4	spliced_intron	10588124	10588890	-	asmbl_42856	none	STRG.4797.1,Trinity_GG_2638_c0_g1_i2,blat.proc3825150.chain_933	3	Trinity_GG_2638_c0_g1_i1,blat.proc3825150.chain_932	2
scaffold_4	spliced_intron	9344094	9344316	-	asmbl_42807,asmbl_42810	none	STRG.4735.1,blat.proc3825150.chain_947,blat.proc3825150.chain_949	3	blat.proc3825150.chain_946	1
scaffold_11	retained_exon	8478214	8478294	+	asmbl_5784	none	STRG.13864.2,Trinity_GG_24888_c0_g1_i4,blat.proc3825170.chain_2292	3	STRG.13864.1,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2291	3
scaffold_1	ends_in_intron	4386759	4386759	-	asmbl_187	none	Trinity_GG_92_c0_g1_i4,blat.proc3825148.chain_146	2	STRG.269.1,blat.proc3825148.chain_147	2
scaffold_19	skipped_exon	13262428	13262871	-	asmbl_22633	none	STRG.22647.2	1	STRG.22647.1,blat.proc3825158.chain_3491,blat.proc3825158.chain_3493	3
scaffold_13	spliced_intron	5701364	5701646	-	asmbl_9708,asmbl_9709	none	STRG.15881.1,blat.proc3825156.chain_726,blat.proc3825156.chain_733	3	STRG.15881.2,blat.proc3825156.chain_728,blat.proc3825156.chain_729	3
scaffold_2	starts_in_intron	1328919	1328919	+	asmbl_24188	none	STRG.1604.4,blat.proc3825164.chain_1785	2	STRG.1604.3,blat.proc3825164.chain_1784	2
scaffold_27	alt_acceptor	3000380	3000381	+	asmbl_36150,asmbl_36151,asmbl_36156,asmbl_36158,asmbl_36159	none	STRG.28786.1,STRG.28786.2,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	7	STRG.28786.3,STRG.28786.4	2
scaffold_6	retained_intron	12053399	12053576	-	asmbl_48783	none	Trinity_GG_4489_c0_g1_i1,blat.proc3825152.chain_302	2	STRG.7980.1,blat.proc3825152.chain_303	2
scaffold_3	spliced_intron	10274721	10275024	+	asmbl_40247,asmbl_40253,asmbl_40257	none	STRG.3467.1,STRG.3467.3,blat.proc3825164.chain_3727,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734	5	blat.proc3825164.chain_3728,blat.proc3825164.chain_3736	2
scaffold_3	retained_intron	17364750	17365193	-	asmbl_39550,asmbl_39556	none	blat.proc3825150.chain_175,blat.proc3825150.chain_183	2	STRG.3971.1,STRG.3971.4,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_181,blat.proc3825150.chain_182	6
scaffold_2	starts_in_intron	14549219	14549219	+	asmbl_24948,asmbl_24949	none	STRG.2464.3,blat.proc3825164.chain_2661	2	STRG.2464.1,STRG.2464.2,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	10
scaffold_2	retained_exon	7881156	7881454	+	asmbl_24587	none	Trinity_GG_18501_c0_g1_i16,blat.proc3825164.chain_2292	2	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2
scaffold_2	retained_intron	11199609	11200469	-	asmbl_23447	none	blat.proc3825148.chain_2247,blat.proc3825148.chain_2248	2	STRG.2253.1,blat.proc3825148.chain_2249	2
scaffold_1	spliced_intron	13130586	13130726	-	asmbl_796,asmbl_799	none	STRG.955.1,blat.proc3825148.chain_914,blat.proc3825148.chain_915	3	blat.proc3825148.chain_913	1
scaffold_28	alt_acceptor	7875617	7875618	-	asmbl_38430	none	blat.proc3825162.chain_3028	1	STRG.29870.1,blat.proc3825162.chain_3026,blat.proc3825162.chain_3029,blat.proc3825162.chain_3030	4
scaffold_5	retained_intron	2673418	2674638	-	asmbl_43892,asmbl_43893,asmbl_43897	none	STRG.5796.3,STRG.5796.5,STRG.5796.6,blat.proc3825150.chain_1946,blat.proc3825150.chain_1947	5	STRG.5796.2,blat.proc3825150.chain_1944,blat.proc3825150.chain_1949	3
scaffold_8	alt_donor	18251497	18251498	-	asmbl_52528	none	Trinity_GG_5973_c0_g1_i7,blat.proc3825152.chain_3014	2	STRG.10728.1,STRG.10728.2,STRG.10728.3,STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3015,blat.proc3825152.chain_3016,blat.proc3825152.chain_3017,blat.proc3825152.chain_3018,blat.proc3825152.chain_3019	12
scaffold_20	retained_exon	9629034	9629565	+	asmbl_26871	none	STRG.23501.2	1	STRG.23501.4	1
scaffold_20	spliced_intron	5910780	5911000	+	asmbl_26648	none	blat.proc3825176.chain_393	1	Trinity_GG_30120_c1_g1_i2,blat.proc3825176.chain_391,blat.proc3825176.chain_392,blat.proc3825176.chain_394	4
scaffold_24	skipped_exon	4318761	4319489	+	asmbl_32188	none	STRG.26600.3	1	STRG.26600.1,STRG.26600.2	2
scaffold_20	retained_exon	1616678	1616761	-	asmbl_25590	none	STRG.22893.3	1	STRG.22893.2,STRG.22893.4	2
scaffold_25	spliced_intron	5696565	5696676	-	asmbl_34275,asmbl_34278	none	STRG.27468.1,blat.proc3825162.chain_855,blat.proc3825162.chain_857	3	blat.proc3825162.chain_858	1
scaffold_1	alt_donor	18339123	18339124	+	asmbl_2555	none	STRG.1292.2	1	STRG.1292.1,blat.proc3825164.chain_1359	2
scaffold_21	retained_intron	3117600	3118025	-	asmbl_27510	none	STRG.23938.1,Trinity_GG_13300_c0_g1_i3,blat.proc3825160.chain_997	3	blat.proc3825160.chain_995	1
scaffold_25	spliced_intron	7803694	7803782	-	asmbl_34406	none	STRG.27602.1,blat.proc3825162.chain_948	2	blat.proc3825162.chain_947	1
scaffold_9	alt_acceptor	5019230	5019231	+	asmbl_53980	none	Trinity_GG_23480_c0_g1_i3,blat.proc3825168.chain_3600	2	STRG.11074.2,Trinity_GG_23480_c0_g1_i2,blat.proc3825168.chain_3599	3
scaffold_2	retained_intron	8875113	8876256	+	asmbl_24653,asmbl_24654,asmbl_24655	none	STRG.2139.1,STRG.2139.2,STRG.2139.3,blat.proc3825164.chain_2330	4	STRG.2139.4,blat.proc3825164.chain_2329	2
scaffold_3	skipped_exon	5750863	5753366	+	asmbl_40075	none	STRG.3240.1,Trinity_GG_19095_c0_g1_i4,blat.proc3825164.chain_3412	3	STRG.3240.3	1
scaffold_6	starts_in_intron	5929329	5929329	+	asmbl_46986	none	STRG.7543.2	1	STRG.7543.1,blat.proc3825166.chain_3725,blat.proc3825166.chain_3726	3
scaffold_6	alt_acceptor	7267969	7267970	-	asmbl_48487	none	STRG.7632.1,blat.proc3825152.chain_32	2	blat.proc3825152.chain_31	1
scaffold_16	alternate_exon	4073720	4073833	+	asmbl_16166,asmbl_16167	none	STRG.19224.2,blat.proc3825174.chain_116	2	STRG.19224.1,Trinity_GG_27836_c0_g1_i4,blat.proc3825174.chain_115,blat.proc3825174.chain_117	4
scaffold_25	retained_intron	801994	802101	-	asmbl_34000	none	STRG.27136.5,Trinity_GG_15207_c1_g1_i2,blat.proc3825162.chain_512	3	STRG.27136.1,STRG.27136.3,STRG.27136.4	3
scaffold_3	alternate_exon	9844427	9844650	-	asmbl_39072	none	blat.proc3825148.chain_3336	1	STRG.3462.2,blat.proc3825148.chain_3337	2
scaffold_26	retained_exon	4142408	4142441	+	asmbl_34874	none	STRG.28122.3	1	STRG.28122.2,STRG.28122.4	2
scaffold_21	skipped_exon	256225	257073	-	asmbl_27282,asmbl_27286	none	STRG.23725.5,blat.proc3825160.chain_811,blat.proc3825160.chain_812	3	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806	9
scaffold_13	retained_exon	4602224	4602268	-	asmbl_9647	none	Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665	2	Trinity_GG_8874_c0_g1_i6,blat.proc3825156.chain_666,blat.proc3825156.chain_673	3
scaffold_12	alt_acceptor	8325304	8325305	+	asmbl_7817	none	STRG.14866.2	1	STRG.14866.1,blat.proc3825170.chain_3447	2
scaffold_5	skipped_exon	4683007	4684210	-	asmbl_43985,asmbl_43994	none	STRG.5929.4,blat.proc3825150.chain_2080,blat.proc3825150.chain_2084	3	STRG.5929.1,blat.proc3825150.chain_2075,blat.proc3825150.chain_2078,blat.proc3825150.chain_2081,blat.proc3825150.chain_2083,blat.proc3825150.chain_2085	6
scaffold_14	alt_donor	12824715	12824716	-	asmbl_13613,asmbl_13619	none	STRG.17598.5,Trinity_GG_9905_c0_g1_i1,blat.proc3825156.chain_2462	3	STRG.17598.1,STRG.17598.2,STRG.17598.4,blat.proc3825156.chain_2458,blat.proc3825156.chain_2464	5
scaffold_14	retained_exon	11221099	11221501	-	asmbl_13457	none	blat.proc3825156.chain_2268	1	STRG.17457.1,blat.proc3825156.chain_2269	2
scaffold_9	alt_acceptor	7712199	7712200	-	asmbl_55110	none	STRG.11222.1,Trinity_GG_6212_c0_g1_i1,blat.proc3825152.chain_3457	3	STRG.11222.2,Trinity_GG_6212_c0_g1_i3,blat.proc3825152.chain_3458	3
scaffold_4	alt_donor	8622021	8622022	-	asmbl_42780	none	STRG.4680.1,blat.proc3825150.chain_900,blat.proc3825150.chain_901	3	STRG.4680.2	1
scaffold_15	ends_in_intron	2444098	2444098	-	asmbl_14009	none	Trinity_GG_10068_c0_g2_i1	1	STRG.18024.1	1
scaffold_13	spliced_intron	7507453	7507966	-	asmbl_9885,asmbl_9891	none	STRG.16047.1,blat.proc3825156.chain_899,blat.proc3825156.chain_905	3	STRG.16047.3,blat.proc3825156.chain_903	2
scaffold_4	alt_acceptor	12786735	12786736	+	asmbl_41754	none	STRG.4935.3	1	STRG.4935.1,STRG.4935.2,blat.proc3825166.chain_1365,blat.proc3825166.chain_1369	4
scaffold_15	spliced_intron	12537084	12537192	-	asmbl_14581	none	STRG.18709.3,blat.proc3825156.chain_3556	2	blat.proc3825156.chain_3557	1
scaffold_14	spliced_intron	2886580	2886644	-	asmbl_12979,asmbl_12982	none	STRG.16887.3,blat.proc3825156.chain_1633	2	STRG.16887.1,STRG.16887.2,STRG.16887.4,blat.proc3825156.chain_1635	4
scaffold_2	ends_in_intron	13093488	13093488	+	asmbl_24819	none	blat.proc3825164.chain_2529	1	STRG.2335.1,blat.proc3825164.chain_2528	2
scaffold_12	retained_exon	3329360	3330305	+	asmbl_7547	none	STRG.14555.2,Trinity_GG_25356_c0_g1_i2,blat.proc3825170.chain_3110	3	STRG.14555.4	1
scaffold_10	retained_intron	10801165	10801378	+	asmbl_3439	none	STRG.12766.2	1	STRG.12766.1,blat.proc3825170.chain_1372,blat.proc3825170.chain_1373,blat.proc3825170.chain_1374	4
scaffold_27	starts_in_intron	5063067	5063067	-	asmbl_36985,asmbl_36987	none	STRG.28937.1,blat.proc3825162.chain_2160	2	STRG.28937.2,Trinity_GG_16216_c0_g1_i1,blat.proc3825162.chain_2162	3
scaffold_6	ends_in_intron	17882835	17882835	-	asmbl_49212	none	Trinity_GG_4813_c0_g1_i6,blat.proc3825152.chain_877	2	STRG.8481.1,STRG.8481.3,blat.proc3825152.chain_879,blat.proc3825152.chain_880	4
scaffold_23	starts_in_intron	4091309	4091309	+	asmbl_31480	none	Trinity_GG_31556_c2_g1_i1,blat.proc3825176.chain_2757	2	STRG.25819.1,STRG.25819.2,Trinity_GG_31556_c0_g1_i1,blat.proc3825176.chain_2754,blat.proc3825176.chain_2755	5
scaffold_14	alt_acceptor	405641	405642	+	asmbl_11748,asmbl_11750,asmbl_11753	none	STRG.16734.2,STRG.16734.3,STRG.16734.4,blat.proc3825172.chain_1502,blat.proc3825172.chain_1508	5	STRG.16734.5,blat.proc3825172.chain_1515,blat.proc3825172.chain_1516	3
scaffold_6	spliced_intron	7937253	7937838	-	asmbl_48515	none	STRG.7676.4	1	STRG.7676.1,blat.proc3825152.chain_71,blat.proc3825152.chain_72,blat.proc3825152.chain_73	4
scaffold_13	ends_in_intron	2335206	2335206	+	asmbl_10608,asmbl_10610,asmbl_10611	none	STRG.15564.6,STRG.15564.7,blat.proc3825172.chain_230	3	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,blat.proc3825172.chain_222,blat.proc3825172.chain_224	6
scaffold_9	spliced_intron	11842492	11842644	-	asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55329,asmbl_55330,asmbl_55331	none	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3664	7	blat.proc3825152.chain_3663	1
scaffold_14	skipped_exon	658583	660368	-	asmbl_12840	none	Trinity_GG_9335_c0_g1_i1,blat.proc3825156.chain_1497	2	STRG.16743.1,Trinity_GG_9335_c0_g1_i3,blat.proc3825156.chain_1496	3
scaffold_16	spliced_intron	430142	430213	-	asmbl_16869,asmbl_16870,asmbl_16871,asmbl_16872,asmbl_16873,asmbl_16874,asmbl_16877,asmbl_16879,asmbl_16880	none	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_196,blat.proc3825158.chain_197,blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_200,blat.proc3825158.chain_202,blat.proc3825158.chain_204	9	blat.proc3825158.chain_201,blat.proc3825158.chain_203,blat.proc3825158.chain_205	3
scaffold_27	starts_in_intron	4350630	4350630	+	asmbl_36273	none	blat.proc3825178.chain_2070	1	STRG.28892.1,blat.proc3825178.chain_2071	2
scaffold_13	spliced_intron	8951830	8951935	-	asmbl_10002,asmbl_10003	none	STRG.16166.1,STRG.16166.2,blat.proc3825156.chain_1078,blat.proc3825156.chain_1079	4	blat.proc3825156.chain_1077	1
scaffold_17	retained_intron	8875826	8875983	+	asmbl_19037	none	STRG.20506.2,blat.proc3825174.chain_1363	2	STRG.20506.1,blat.proc3825174.chain_1365	2
scaffold_14	retained_exon	15584128	15585898	+	asmbl_12628,asmbl_12632,asmbl_12634	none	STRG.17811.1,STRG.17811.3,blat.proc3825172.chain_2554,blat.proc3825172.chain_2556	4	STRG.17811.5,STRG.17811.6	2
scaffold_17	alt_acceptor	4005563	4005564	+	asmbl_18762	none	STRG.20163.1	1	blat.proc3825174.chain_1055	1
scaffold_17	alt_donor	12090114	12090115	+	asmbl_19257	none	STRG.20737.2	1	STRG.20737.3	1
scaffold_18	alternate_exon	10928727	10928956	-	asmbl_20119	none	STRG.21658.1,blat.proc3825158.chain_2513	2	STRG.21658.3	1
scaffold_1	alt_acceptor	5685351	5685352	+	asmbl_1747,asmbl_1749	none	STRG.368.1,blat.proc3825164.chain_493,blat.proc3825164.chain_494	3	STRG.368.2	1
scaffold_15	alt_acceptor	3021714	3021715	+	asmbl_15093	none	STRG.18090.2,blat.proc3825172.chain_2765	2	STRG.18090.1,blat.proc3825172.chain_2764	2
scaffold_15	alt_acceptor	6087179	6087180	+	asmbl_15236	none	STRG.18272.2	1	STRG.18272.1,blat.proc3825172.chain_2950	2
scaffold_9	starts_in_intron	13035359	13035359	-	asmbl_55414	none	blat.proc3825154.chain_65	1	STRG.11610.1	1
scaffold_9	retained_intron	11028497	11028576	-	asmbl_55269	none	STRG.11415.2	1	STRG.11415.1	1
scaffold_22	retained_exon	10681598	10681709	-	asmbl_29617	none	blat.proc3825160.chain_2610	1	STRG.25415.1,STRG.25415.2,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608	4
scaffold_19	alt_acceptor	6376932	6376933	-	asmbl_22207	none	blat.proc3825158.chain_2997	1	STRG.22160.1,blat.proc3825158.chain_2998	2
scaffold_28	starts_in_intron	2268295	2268295	-	asmbl_38024,asmbl_38030	none	blat.proc3825162.chain_2575,blat.proc3825162.chain_2579	2	STRG.29401.1,STRG.29401.3,blat.proc3825162.chain_2577,blat.proc3825162.chain_2578,blat.proc3825162.chain_2580	5
scaffold_13	starts_in_intron	11624379	11624379	-	asmbl_10099	none	blat.proc3825156.chain_1129	1	STRG.16309.1,blat.proc3825156.chain_1130	2
scaffold_5	alt_donor	13087127	13087128	-	asmbl_44510	none	STRG.6544.1,blat.proc3825150.chain_2717	2	STRG.6544.2,blat.proc3825150.chain_2716	2
scaffold_6	retained_intron	13710244	13710366	-	asmbl_48940	none	blat.proc3825152.chain_461	1	STRG.8119.1,blat.proc3825152.chain_462	2
scaffold_5	alt_acceptor	6052753	6052754	+	asmbl_45395	none	STRG.6025.1,blat.proc3825166.chain_2253	2	blat.proc3825166.chain_2254	1
scaffold_2	alt_acceptor	13902712	13902713	-	asmbl_23538	none	blat.proc3825148.chain_2390	1	STRG.2384.1,STRG.2384.2,blat.proc3825148.chain_2389,blat.proc3825148.chain_2391,blat.proc3825148.chain_2392	5
scaffold_2	spliced_intron	14278868	14278991	+	asmbl_24905	none	blat.proc3825164.chain_2594	1	blat.proc3825164.chain_2592,blat.proc3825164.chain_2595	2
scaffold_5	retained_exon	14263019	14263099	+	asmbl_45914,asmbl_45916,asmbl_45917,asmbl_45920,asmbl_45921	none	STRG.6638.1,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2792	6	STRG.6638.2,blat.proc3825166.chain_2785	2
scaffold_19	retained_intron	8526	8631	+	asmbl_21168	none	STRG.21816.2	1	STRG.21816.3	1
scaffold_24	alt_acceptor	9071970	9071971	+	asmbl_32489	none	Trinity_GG_32214_c0_g1_i1,blat.proc3825178.chain_152	2	STRG.26950.1,STRG.26950.2,Trinity_GG_32214_c0_g1_i3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_148,blat.proc3825178.chain_149,blat.proc3825178.chain_150	8
scaffold_10	alternate_exon	948495	949197	+	asmbl_2891,asmbl_2892	none	STRG.11975.1,Trinity_GG_23961_c0_g1_i1,Trinity_GG_23961_c0_g1_i3,blat.proc3825170.chain_705,blat.proc3825170.chain_706	5	Trinity_GG_23961_c0_g1_i4,blat.proc3825170.chain_708	2
scaffold_16	ends_in_intron	8589913	8589913	+	asmbl_16414,asmbl_16423	none	blat.proc3825174.chain_374,blat.proc3825174.chain_376	2	STRG.19490.1,STRG.19490.2,STRG.19490.3,STRG.19490.7,blat.proc3825174.chain_372,blat.proc3825174.chain_373,blat.proc3825174.chain_375	7
scaffold_10	retained_intron	378915	379004	-	asmbl_3945,asmbl_3949,asmbl_3950	none	STRG.11922.2,Trinity_GG_6631_c0_g1_i1,Trinity_GG_6631_c0_g1_i5,blat.proc3825154.chain_456,blat.proc3825154.chain_460	5	STRG.11922.1,STRG.11922.3,blat.proc3825154.chain_461	3
scaffold_8	spliced_intron	11852296	11852549	+	asmbl_53277,asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53288,asmbl_53289,asmbl_53290,asmbl_53291,asmbl_53292,asmbl_53293	none	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3013,blat.proc3825168.chain_3015,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	10	Trinity_GG_23130_c0_g1_i6,blat.proc3825168.chain_3014	2
scaffold_15	retained_exon	345701	345796	+	asmbl_14960	none	STRG.17885.2	1	STRG.17885.1,blat.proc3825172.chain_2607	2
scaffold_5	retained_intron	5039918	5039996	-	asmbl_44025	none	Trinity_GG_3352_c0_g1_i2,blat.proc3825150.chain_2160	2	STRG.5957.1,Trinity_GG_3352_c0_g1_i1,blat.proc3825150.chain_2159	3
scaffold_15	spliced_intron	4117643	4117724	-	asmbl_14127	none	STRG.18155.4	1	STRG.18155.1,STRG.18155.3,Trinity_GG_10180_c0_g1_i1,blat.proc3825156.chain_2938	4
scaffold_9	retained_intron	4160412	4160541	-	asmbl_54959	none	blat.proc3825152.chain_3279	1	STRG.11019.1,STRG.11019.2,blat.proc3825152.chain_3281	3
scaffold_10	skipped_exon	5174275	5176857	+	asmbl_3147,asmbl_3148,asmbl_3154	none	STRG.12343.1,STRG.12343.3,blat.proc3825170.chain_988,blat.proc3825170.chain_990	4	STRG.12343.2,blat.proc3825170.chain_991	2
scaffold_5	spliced_intron	939477	939513	-	asmbl_43793	none	STRG.5640.3	1	STRG.5640.1,Trinity_GG_3129_c0_g1_i1	2
scaffold_14	spliced_intron	1094343	1094586	+	asmbl_11802	none	STRG.16769.1,blat.proc3825172.chain_1478	2	STRG.16769.3,blat.proc3825172.chain_1477	2
scaffold_17	spliced_intron	2685101	2685190	+	asmbl_18679,asmbl_18680,asmbl_18682,asmbl_18683,asmbl_18684	none	STRG.20069.1,STRG.20069.2,STRG.20069.3,blat.proc3825174.chain_848,blat.proc3825174.chain_849,blat.proc3825174.chain_851,blat.proc3825174.chain_852	7	Trinity_GG_28247_c0_g1_i6,blat.proc3825174.chain_850	2
scaffold_12	alternate_exon	4752949	4753842	+	asmbl_7618	none	STRG.14653.2,Trinity_GG_25361_c0_g1_i1,blat.proc3825170.chain_3125,blat.proc3825170.chain_3128	4	STRG.14653.1,blat.proc3825170.chain_3129	2
scaffold_5	alternate_exon	1178703	1178770	-	asmbl_43832	none	blat.proc3825150.chain_1938	1	STRG.5668.1,STRG.5668.2	2
scaffold_2	skipped_exon	14738582	14741472	+	asmbl_24974,asmbl_24980	none	STRG.2475.1,blat.proc3825164.chain_2627,blat.proc3825164.chain_2630	3	STRG.2475.2,blat.proc3825164.chain_2626,blat.proc3825164.chain_2632	3
scaffold_8	alt_acceptor	8882441	8882442	-	asmbl_51976	none	STRG.10140.1,blat.proc3825152.chain_2397	2	blat.proc3825152.chain_2396	1
scaffold_28	alt_donor	2267626	2267627	-	asmbl_38025	none	STRG.29401.3,blat.proc3825162.chain_2577	2	STRG.29401.1,STRG.29401.2,blat.proc3825162.chain_2575,blat.proc3825162.chain_2578,blat.proc3825162.chain_2579	5
scaffold_27	spliced_intron	927062	927428	-	asmbl_36715,asmbl_36716	none	STRG.28587.1,Trinity_GG_15981_c0_g1_i1,Trinity_GG_15981_c0_g1_i5,blat.proc3825162.chain_1791,blat.proc3825162.chain_1792	5	STRG.28587.2,Trinity_GG_15981_c0_g1_i3,blat.proc3825162.chain_1790	3
scaffold_12	skipped_exon	2721443	2722927	+	asmbl_7517	none	Trinity_GG_25344_c0_g1_i4,blat.proc3825170.chain_3075	2	Trinity_GG_25344_c0_g1_i5,blat.proc3825170.chain_3078	2
scaffold_11	spliced_intron	4744838	4745154	-	asmbl_6623	none	STRG.13567.1,blat.proc3825154.chain_2165	2	blat.proc3825154.chain_2164	1
scaffold_8	alternate_exon	16385527	16385960	+	asmbl_53453,asmbl_53456	none	STRG.10620.4,Trinity_GG_23226_c0_g1_i6,blat.proc3825168.chain_3193	3	STRG.10620.3	1
scaffold_9	retained_exon	16708929	16708985	-	asmbl_55617,asmbl_55618	none	STRG.11817.1,STRG.11817.2,blat.proc3825154.chain_303	3	blat.proc3825154.chain_302	1
scaffold_6	alt_donor	12479552	12479553	+	asmbl_47400,asmbl_47403	none	STRG.8006.4,blat.proc3825168.chain_472	2	STRG.8006.2,STRG.8006.3,blat.proc3825168.chain_474,blat.proc3825168.chain_475	4
scaffold_13	retained_intron	2652464	2652553	-	asmbl_9470	none	blat.proc3825156.chain_376	1	STRG.15580.1,Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_377,blat.proc3825156.chain_378,blat.proc3825156.chain_379,blat.proc3825156.chain_380	6
scaffold_21	alt_acceptor	1798761	1798762	+	asmbl_28365,asmbl_28366,asmbl_28367	none	STRG.23826.1,blat.proc3825176.chain_1000,blat.proc3825176.chain_997,blat.proc3825176.chain_999	4	STRG.23826.2,blat.proc3825176.chain_998	2
scaffold_9	spliced_intron	9648651	9648733	+	asmbl_54216	none	STRG.11340.1,blat.proc3825170.chain_134	2	STRG.11340.2	1
scaffold_3	alt_acceptor	13703498	13703499	+	asmbl_40448,asmbl_40450	none	STRG.3717.1,STRG.3717.4,Trinity_GG_19399_c0_g1_i2,blat.proc3825166.chain_217,blat.proc3825166.chain_222	5	STRG.3717.2,blat.proc3825166.chain_218	2
scaffold_11	starts_in_intron	8099212	8099212	+	asmbl_5725,asmbl_5727	none	STRG.13822.4,Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342	3	STRG.13822.1,STRG.13822.2,STRG.13822.3,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	11
scaffold_11	starts_in_intron	5503028	5503028	-	asmbl_6664	none	STRG.13620.2,blat.proc3825154.chain_2127	2	STRG.13620.1,blat.proc3825154.chain_2128,blat.proc3825154.chain_2129	3
scaffold_26	ends_in_intron	3622825	3622825	+	asmbl_34804	none	STRG.28042.1,blat.proc3825178.chain_1086	2	STRG.28042.2,blat.proc3825178.chain_1087	2
scaffold_9	alt_acceptor	7816388	7816389	+	asmbl_54143	none	STRG.11228.2	1	STRG.11228.1,blat.proc3825170.chain_16	2
scaffold_13	ends_in_intron	386304	386304	-	asmbl_9333	none	Trinity_GG_8662_c0_g1_i6	1	STRG.15438.1,STRG.15438.2,Trinity_GG_8662_c0_g1_i1,blat.proc3825156.chain_284,blat.proc3825156.chain_287,blat.proc3825156.chain_288	6
scaffold_25	spliced_intron	6303553	6303774	+	asmbl_33607,asmbl_33609,asmbl_33614,asmbl_33617	none	STRG.27515.1,STRG.27515.2,blat.proc3825178.chain_556,blat.proc3825178.chain_557,blat.proc3825178.chain_558	5	blat.proc3825178.chain_555,blat.proc3825178.chain_559,blat.proc3825178.chain_560	3
scaffold_24	starts_in_intron	1304114	1304114	-	asmbl_32726	none	blat.proc3825160.chain_3419	1	STRG.26388.1	1
scaffold_16	alt_donor	9144615	9144616	+	asmbl_16459,asmbl_16460,asmbl_16461	none	STRG.19514.1,blat.proc3825174.chain_435,blat.proc3825174.chain_436,blat.proc3825174.chain_438	4	blat.proc3825174.chain_434,blat.proc3825174.chain_437	2
scaffold_23	spliced_intron	7005689	7006309	-	asmbl_31004,asmbl_31006	none	STRG.26025.3,STRG.26025.4	2	Trinity_GG_14528_c0_g1_i2,blat.proc3825160.chain_3122	2
scaffold_6	alt_acceptor	19075762	19075763	+	asmbl_47873	none	Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_952	2	STRG.8575.2,Trinity_GG_21983_c0_g1_i4,blat.proc3825168.chain_950	3
scaffold_22	retained_intron	4189098	4189298	+	asmbl_29969,asmbl_29970	none	STRG.24832.1,blat.proc3825176.chain_1926	2	STRG.24832.2,blat.proc3825176.chain_1925	2
scaffold_4	spliced_intron	4433714	4433862	+	asmbl_41270	none	STRG.4342.4	1	STRG.4342.1,blat.proc3825166.chain_791	2
scaffold_2	ends_in_intron	1762054	1762054	-	asmbl_22868	none	Trinity_GG_887_c1_g2_i2,blat.proc3825148.chain_1594	2	STRG.1647.1,blat.proc3825148.chain_1593	2
scaffold_2	starts_in_intron	9492068	9492068	+	asmbl_24683	none	Trinity_GG_18507_c0_g1_i2,blat.proc3825164.chain_2302	2	STRG.2176.1,Trinity_GG_18507_c0_g1_i1,blat.proc3825164.chain_2303	3
scaffold_17	retained_intron	1128141	1128819	+	asmbl_18590,asmbl_18591	none	STRG.19963.2,STRG.19963.3,Trinity_GG_28239_c0_g1_i7,blat.proc3825174.chain_837	4	STRG.19963.1,blat.proc3825174.chain_835	2
scaffold_12	alt_acceptor	4721064	4721065	-	asmbl_8431,asmbl_8432,asmbl_8436	none	STRG.14649.2,STRG.14649.3,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	5	STRG.14649.4	1
scaffold_10	spliced_intron	634820	635077	-	asmbl_3973,asmbl_3974,asmbl_3975,asmbl_3977	none	STRG.11945.1,STRG.11945.2,STRG.11945.4,Trinity_GG_6642_c0_g1_i1,blat.proc3825154.chain_483,blat.proc3825154.chain_484,blat.proc3825154.chain_485	7	STRG.11945.3,Trinity_GG_6642_c0_g1_i2,blat.proc3825154.chain_482	3
scaffold_14	starts_in_intron	6939092	6939092	+	asmbl_12122	none	blat.proc3825172.chain_1915	1	STRG.17137.1,blat.proc3825172.chain_1916,blat.proc3825172.chain_1917,blat.proc3825172.chain_1918	4
scaffold_13	retained_intron	530723	531277	-	asmbl_9356	none	STRG.15450.1,Trinity_GG_8669_c0_g1_i1,blat.proc3825156.chain_317	3	STRG.15450.2	1
scaffold_4	retained_intron	14648429	14648648	-	asmbl_43061,asmbl_43066	none	STRG.5090.3,blat.proc3825150.chain_1236	2	STRG.5090.1,STRG.5090.2,blat.proc3825150.chain_1237,blat.proc3825150.chain_1238	4
scaffold_21	retained_intron	5598203	5598331	-	asmbl_27681	none	Trinity_GG_13440_c0_g1_i2,blat.proc3825160.chain_1256	2	STRG.24095.1,STRG.24095.2,blat.proc3825160.chain_1255,blat.proc3825160.chain_1257	4
scaffold_16	alt_donor	125457	125458	+	asmbl_15997,asmbl_16000	none	STRG.19007.2,STRG.19007.3,Trinity_GG_27742_c0_g1_i2,blat.proc3825172.chain_3685	4	Trinity_GG_27742_c0_g1_i1,blat.proc3825172.chain_3682	2
scaffold_11	retained_intron	3140143	3140263	-	asmbl_6532	none	Trinity_GG_7536_c1_g1_i2,blat.proc3825154.chain_2028	2	Trinity_GG_7536_c1_g1_i1,blat.proc3825154.chain_2027	2
scaffold_1	ends_in_intron	13884427	13884427	-	asmbl_858	none	blat.proc3825148.chain_1007	1	STRG.996.1,STRG.996.3,blat.proc3825148.chain_1003,blat.proc3825148.chain_1004	4
scaffold_27	spliced_intron	3104389	3104460	+	asmbl_36183	none	STRG.28797.1,blat.proc3825178.chain_1954	2	blat.proc3825178.chain_1953	1
scaffold_19	starts_in_intron	12356638	12356638	+	asmbl_21794	none	Trinity_GG_29794_c1_g1_i1,blat.proc3825174.chain_3591	2	STRG.22567.2	1
scaffold_6	alt_acceptor	14196362	14196363	+	asmbl_47590	none	STRG.8185.1,Trinity_GG_21766_c0_g1_i4,blat.proc3825168.chain_610,blat.proc3825168.chain_611	4	STRG.8185.2,blat.proc3825168.chain_613	2
scaffold_6	alternate_exon	16606100	16606264	+	asmbl_47705	none	STRG.8386.3	1	STRG.8386.1	1
scaffold_28	alt_donor	5638066	5638067	-	asmbl_38311,asmbl_38312	none	STRG.29706.4,blat.proc3825162.chain_2856	2	STRG.29706.1,STRG.29706.2,STRG.29706.3,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854,blat.proc3825162.chain_2855,blat.proc3825162.chain_2858,blat.proc3825162.chain_2859	8
scaffold_9	retained_exon	17496036	17496107	-	asmbl_55653	none	STRG.11841.2,Trinity_GG_6561_c0_g1_i1,blat.proc3825154.chain_343	3	STRG.11841.1,Trinity_GG_6561_c0_g1_i2,blat.proc3825154.chain_344	3
scaffold_16	alternate_exon	8027986	8028273	-	asmbl_17214	none	Trinity_GG_10921_c0_g2_i1,blat.proc3825158.chain_596	2	blat.proc3825158.chain_594	1
scaffold_23	spliced_intron	10938169	10938227	-	asmbl_31179	none	blat.proc3825160.chain_3413,blat.proc3825160.chain_3414	2	Trinity_GG_14694_c0_g1_i2,Trinity_GG_14694_c0_g1_i3,Trinity_GG_14694_c0_g1_i4	3
scaffold_28	alt_acceptor	754642	754643	-	asmbl_37932,asmbl_37933,asmbl_37936	none	STRG.29291.2,STRG.29291.3,STRG.29291.4,blat.proc3825162.chain_2381,blat.proc3825162.chain_2382	5	STRG.29291.1,blat.proc3825162.chain_2383,blat.proc3825162.chain_2384	3
scaffold_15	alternate_exon	9741714	9741756	-	asmbl_14408	none	STRG.18492.3	1	STRG.18492.1,blat.proc3825156.chain_3291	2
scaffold_4	starts_in_intron	13824403	13824403	-	asmbl_43010	none	blat.proc3825150.chain_1169	1	STRG.5009.1,STRG.5009.2,STRG.5009.3,blat.proc3825150.chain_1167,blat.proc3825150.chain_1168	5
scaffold_11	spliced_intron	13035297	13036295	-	asmbl_7113,asmbl_7116	none	STRG.14179.1,blat.proc3825154.chain_2755,blat.proc3825154.chain_2757	3	STRG.14179.2,blat.proc3825154.chain_2758	2
scaffold_27	alt_acceptor	314737	314738	-	asmbl_36661	none	STRG.28557.3	1	blat.proc3825162.chain_1728	1
scaffold_20	starts_in_intron	11174076	11174076	-	asmbl_26147	none	blat.proc3825160.chain_715	1	STRG.23632.1,blat.proc3825160.chain_714	2
scaffold_16	starts_in_intron	8042759	8042759	+	asmbl_16373	none	Trinity_GG_27912_c0_g1_i6,blat.proc3825174.chain_274	2	STRG.19448.1,STRG.19448.2,Trinity_GG_27912_c0_g1_i2,Trinity_GG_27912_c0_g1_i5,blat.proc3825174.chain_275,blat.proc3825174.chain_276,blat.proc3825174.chain_277,blat.proc3825174.chain_278	8
scaffold_14	retained_exon	7565593	7565729	-	asmbl_13226	none	STRG.17202.2	1	STRG.17202.1,blat.proc3825156.chain_2010	2
scaffold_4	retained_exon	19443661	19444835	+	asmbl_42147	none	STRG.5532.1	1	STRG.5532.2	1
scaffold_13	alternate_exon	710767	710857	+	asmbl_10501	none	STRG.15456.1,blat.proc3825172.chain_165	2	STRG.15456.2,blat.proc3825172.chain_164	2
scaffold_25	starts_in_intron	992715	992715	+	asmbl_33366	none	Trinity_GG_32291_c0_g1_i1,blat.proc3825178.chain_304	2	STRG.27159.1,STRG.27159.2,blat.proc3825178.chain_303	3
scaffold_15	starts_in_intron	4153478	4153478	-	asmbl_14137	none	Trinity_GG_10219_c0_g1_i5,blat.proc3825156.chain_3012	2	STRG.18162.1,Trinity_GG_10219_c0_g1_i2,Trinity_GG_10219_c0_g1_i3,Trinity_GG_10219_c0_g1_i4,blat.proc3825156.chain_3009,blat.proc3825156.chain_3010,blat.proc3825156.chain_3011	7
scaffold_12	alternate_exon	12387533	12387904	+	asmbl_7996	none	STRG.15149.2,blat.proc3825170.chain_3636	2	STRG.15149.1,STRG.15149.3,blat.proc3825170.chain_3637	3
scaffold_22	alternate_exon	6033608	6033666	+	asmbl_30088	none	STRG.24956.1,Trinity_GG_31120_c0_g1_i2,blat.proc3825176.chain_2079	3	STRG.24956.2,Trinity_GG_31120_c0_g1_i3,blat.proc3825176.chain_2081	3
scaffold_11	alt_donor	17086457	17086458	-	asmbl_7250,asmbl_7252	none	STRG.14373.3,blat.proc3825154.chain_2885	2	STRG.14373.4	1
scaffold_5	ends_in_intron	7315585	7315585	+	asmbl_45485	none	blat.proc3825166.chain_2343	1	STRG.6126.1,STRG.6126.2,blat.proc3825166.chain_2342	3
scaffold_23	ends_in_intron	10402821	10402821	+	asmbl_31858	none	blat.proc3825176.chain_3243	1	STRG.26250.1,STRG.26250.2,blat.proc3825176.chain_3244	3
scaffold_11	starts_in_intron	2496690	2496690	-	asmbl_6509	none	blat.proc3825154.chain_2021	1	STRG.13400.1,blat.proc3825154.chain_2020	2
scaffold_7	ends_in_intron	705444	705444	-	asmbl_50688	none	STRG.8607.2,Trinity_GG_4922_c0_g1_i3,blat.proc3825152.chain_1071	3	blat.proc3825152.chain_1070,blat.proc3825152.chain_1073	2
scaffold_1	alt_donor	7814234	7814235	+	asmbl_1924	none	STRG.539.3	1	STRG.539.2	1
scaffold_14	skipped_exon	10017369	10019893	-	asmbl_13405	none	STRG.17375.2,blat.proc3825156.chain_2152	2	STRG.17375.3,STRG.17375.4,blat.proc3825156.chain_2151,blat.proc3825156.chain_2153	4
scaffold_21	alternate_exon	5518851	5519125	-	asmbl_27667	none	blat.proc3825160.chain_1261	1	STRG.24083.3	1
scaffold_15	retained_intron	1504460	1504632	-	asmbl_13956	none	Trinity_GG_10091_c0_g1_i1,Trinity_GG_10091_c0_g1_i4,blat.proc3825156.chain_2767,blat.proc3825156.chain_2768	4	blat.proc3825156.chain_2769	1
scaffold_13	spliced_intron	4602805	4604926	-	asmbl_9647,asmbl_9648,asmbl_9650,asmbl_9652	none	STRG.15796.1,Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665,blat.proc3825156.chain_666,blat.proc3825156.chain_670	5	STRG.15796.3,Trinity_GG_8874_c0_g1_i1,blat.proc3825156.chain_667	3
scaffold_16	alt_donor	6144543	6144544	+	asmbl_16282	none	STRG.19354.4	1	STRG.19354.2,blat.proc3825174.chain_141,blat.proc3825174.chain_143,blat.proc3825174.chain_144,blat.proc3825174.chain_145	5
scaffold_15	ends_in_intron	9724003	9724003	+	asmbl_15407	none	blat.proc3825172.chain_3073	1	STRG.18486.1,STRG.18486.2,STRG.18486.3,blat.proc3825172.chain_3072	4
scaffold_1	alternate_exon	3504917	3504981	-	asmbl_147,asmbl_149	none	STRG.221.1,blat.proc3825148.chain_213,blat.proc3825148.chain_214	3	STRG.221.2,STRG.221.4	2
scaffold_6	spliced_intron	12999743	13000120	-	asmbl_48864	none	blat.proc3825152.chain_496	1	STRG.8068.5,STRG.8068.6,blat.proc3825152.chain_491,blat.proc3825152.chain_493	4
scaffold_1	starts_in_intron	4568459	4568459	-	asmbl_205	none	blat.proc3825148.chain_156	1	STRG.285.1,STRG.285.2,STRG.285.3,STRG.285.4,blat.proc3825148.chain_153	5
scaffold_6	alternate_exon	3806975	3809878	+	asmbl_46861,asmbl_46862,asmbl_46863	none	STRG.7383.2,STRG.7383.4,STRG.7383.5,Trinity_GG_21367_c0_g1_i1,blat.proc3825166.chain_3599	5	Trinity_GG_21370_c0_g1_i12,blat.proc3825166.chain_3609	2
scaffold_19	spliced_intron	12574951	12575421	-	asmbl_22518,asmbl_22520	none	STRG.22584.1,STRG.22584.2,blat.proc3825158.chain_3373	3	blat.proc3825158.chain_3374	1
scaffold_4	alternate_exon	8990668	8990778	-	asmbl_42800	none	STRG.4718.4	1	STRG.4718.1,STRG.4718.3,blat.proc3825150.chain_817	3
scaffold_5	alternate_exon	19029500	19029999	-	asmbl_44889	none	STRG.7022.1	1	STRG.7022.2,STRG.7022.4,STRG.7022.5,blat.proc3825150.chain_3131	4
scaffold_9	spliced_intron	9706825	9707000	+	asmbl_54237,asmbl_54238	none	STRG.11349.6,blat.proc3825170.chain_139	2	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_142	3
scaffold_26	alternate_exon	5983324	5983402	+	asmbl_35066	none	STRG.28312.2	1	STRG.28312.1,Trinity_GG_32976_c0_g1_i4,blat.proc3825178.chain_1430,blat.proc3825178.chain_1433	4
scaffold_17	retained_intron	8044838	8044930	-	asmbl_18071,asmbl_18072	none	STRG.20425.1,Trinity_GG_11504_c0_g1_i3,blat.proc3825158.chain_1489,blat.proc3825158.chain_1490	4	STRG.20425.2,blat.proc3825158.chain_1491	2
scaffold_13	starts_in_intron	1325007	1325007	+	asmbl_10560	none	Trinity_GG_25853_c0_g1_i2,blat.proc3825172.chain_290	2	STRG.15504.2,blat.proc3825172.chain_289	2
scaffold_14	ends_in_intron	329664	329664	-	asmbl_12822,asmbl_12823	none	Trinity_GG_9360_c0_g1_i1,Trinity_GG_9360_c0_g1_i4,blat.proc3825156.chain_1546,blat.proc3825156.chain_1547	4	STRG.16724.1,STRG.16724.2,STRG.16724.3,Trinity_GG_9360_c0_g1_i2,Trinity_GG_9360_c0_g1_i3,blat.proc3825156.chain_1548,blat.proc3825156.chain_1549	7
scaffold_21	spliced_intron	8008219	8008376	+	asmbl_28778	none	STRG.24337.1	1	Trinity_GG_30800_c1_g1_i5,Trinity_GG_30800_c1_g1_i6,blat.proc3825176.chain_1556,blat.proc3825176.chain_1558	4
scaffold_16	alt_acceptor	9562808	9562809	+	asmbl_16495	none	blat.proc3825174.chain_466	1	STRG.19555.1,blat.proc3825174.chain_464	2
scaffold_13	alt_donor	14174276	14174277	+	asmbl_11433	none	STRG.16460.4	1	STRG.16460.2,STRG.16460.5,Trinity_GG_26388_c0_g1_i2,Trinity_GG_26388_c0_g1_i7,blat.proc3825172.chain_1269,blat.proc3825172.chain_1270	6
scaffold_12	alt_acceptor	16315433	16315434	-	asmbl_9117	none	STRG.15386.2,Trinity_GG_8634_c1_g1_i2,blat.proc3825156.chain_242	3	STRG.15386.1	1
scaffold_28	alternate_exon	5232621	5239911	-	asmbl_38267,asmbl_38268,asmbl_38272	none	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	5	Trinity_GG_16598_c0_g1_i3,blat.proc3825162.chain_2784	2
scaffold_11	spliced_intron	1286686	1286928	-	asmbl_6420	none	STRG.13318.1,blat.proc3825154.chain_1869,blat.proc3825154.chain_1870	3	blat.proc3825154.chain_1868	1
scaffold_1	alt_donor	20347140	20347141	+	asmbl_2619	none	STRG.1396.1	1	STRG.1396.5	1
scaffold_23	spliced_intron	4314274	4314425	+	asmbl_31495,asmbl_31497,asmbl_31499,asmbl_31501,asmbl_31502	none	STRG.25852.1,Trinity_GG_31566_c0_g2_i1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2777,blat.proc3825176.chain_2781	6	Trinity_GG_31566_c0_g1_i9,blat.proc3825176.chain_2779	2
scaffold_8	alt_donor	18108227	18108228	+	asmbl_53532	none	STRG.10716.1,Trinity_GG_23260_c0_g1_i1,blat.proc3825168.chain_3251	3	STRG.10716.3,Trinity_GG_23260_c0_g1_i2,blat.proc3825168.chain_3250	3
scaffold_20	alt_donor	7208974	7208975	+	asmbl_26709,asmbl_26711	none	STRG.23290.2,Trinity_GG_30160_c0_g1_i1,blat.proc3825176.chain_454	3	STRG.23290.1,blat.proc3825176.chain_453	2
scaffold_3	starts_in_intron	19844193	19844193	-	asmbl_39667	none	STRG.4099.3	1	STRG.4099.2,blat.proc3825150.chain_240	2
scaffold_4	retained_intron	6286227	6286323	-	asmbl_42670	none	Trinity_GG_2543_c0_g1_i1,blat.proc3825150.chain_779	2	STRG.4498.1,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778	7
scaffold_28	alt_acceptor	3863123	3863124	-	asmbl_38183	none	STRG.29581.2	1	STRG.29581.1	1
scaffold_2	starts_in_intron	862738	862738	+	asmbl_24112	none	STRG.1562.4,blat.proc3825164.chain_1699,blat.proc3825164.chain_1701	3	STRG.1562.1,STRG.1562.2,blat.proc3825164.chain_1700,blat.proc3825164.chain_1703	4
scaffold_1	retained_exon	18524286	18524340	-	asmbl_1121	none	STRG.1303.2,blat.proc3825148.chain_1255	2	STRG.1303.1,blat.proc3825148.chain_1254	2
scaffold_4	alt_donor	5231399	5231400	-	asmbl_42573,asmbl_42576,asmbl_42577	none	STRG.4416.3,STRG.4416.4,STRG.4416.5,blat.proc3825150.chain_649	4	STRG.4416.2,blat.proc3825150.chain_648	2
scaffold_15	alt_donor	9879879	9879880	+	asmbl_15432	none	STRG.18504.1,blat.proc3825172.chain_3136	2	STRG.18504.2	1
scaffold_28	starts_in_intron	4583005	4583005	-	asmbl_38218	none	STRG.29636.1,blat.proc3825162.chain_2824	2	STRG.29636.2	1
scaffold_5	alternate_exon	5041185	5042890	+	asmbl_45325	none	STRG.5958.4	1	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2127,blat.proc3825166.chain_2128	5
scaffold_14	spliced_intron	7506677	7507029	-	asmbl_13215,asmbl_13216,asmbl_13218,asmbl_13219,asmbl_13220	none	STRG.17196.1,STRG.17196.3,STRG.17196.4,blat.proc3825156.chain_1996,blat.proc3825156.chain_1997,blat.proc3825156.chain_1999,blat.proc3825156.chain_2000	7	STRG.17196.2,blat.proc3825156.chain_1998	2
scaffold_3	retained_intron	11654136	11654326	+	asmbl_40369,asmbl_40370,asmbl_40371,asmbl_40375	none	STRG.3605.1,STRG.3605.2,STRG.3605.5,Trinity_GG_19349_c0_g1_i4,Trinity_GG_19349_c0_g1_i6,Trinity_GG_19349_c0_g1_i7,Trinity_GG_19349_c0_g1_i8,blat.proc3825166.chain_121,blat.proc3825166.chain_123,blat.proc3825166.chain_124,blat.proc3825166.chain_125	11	STRG.3605.3,STRG.3605.4,Trinity_GG_19349_c0_g1_i3,blat.proc3825166.chain_119	4
scaffold_10	alt_donor	4159781	4159782	-	asmbl_4268	none	STRG.12253.1,blat.proc3825154.chain_809	2	blat.proc3825154.chain_810	1
scaffold_3	starts_in_intron	3244021	3244021	+	asmbl_39946	none	STRG.3072.4	1	STRG.3072.2,STRG.3072.3	2
scaffold_26	retained_intron	9316596	9316754	+	asmbl_35215,asmbl_35216,asmbl_35222	none	STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1618	3	STRG.28487.1,STRG.28487.2,blat.proc3825178.chain_1612,blat.proc3825178.chain_1614,blat.proc3825178.chain_1615,blat.proc3825178.chain_1616	6
scaffold_16	ends_in_intron	442038	442038	-	asmbl_16883	none	blat.proc3825158.chain_212	1	STRG.19042.3,blat.proc3825158.chain_209,blat.proc3825158.chain_210	3
scaffold_19	alt_acceptor	12492159	12492160	+	asmbl_21809,asmbl_21811	none	STRG.22590.3,blat.proc3825174.chain_3624	2	STRG.22590.1,STRG.22590.4,STRG.22590.5,blat.proc3825174.chain_3625,blat.proc3825174.chain_3626	5
scaffold_10	starts_in_intron	8557517	8557517	-	asmbl_4603	none	blat.proc3825154.chain_1222	1	STRG.12611.1,blat.proc3825154.chain_1221,blat.proc3825154.chain_1223	3
scaffold_13	spliced_intron	3568630	3568756	+	asmbl_10711,asmbl_10712	none	STRG.15671.1,STRG.15671.2,blat.proc3825172.chain_380,blat.proc3825172.chain_382	4	blat.proc3825172.chain_384	1
scaffold_13	alt_acceptor	15672545	15672546	+	asmbl_11525,asmbl_11526,asmbl_11527,asmbl_11528,asmbl_11529	none	STRG.16612.1,STRG.16612.2,STRG.16612.3,STRG.16612.4,STRG.16612.6	5	STRG.16612.5	1
scaffold_28	alt_donor	8153975	8153976	+	asmbl_37728	none	STRG.29884.1	1	STRG.29884.2	1
scaffold_12	alt_acceptor	10583777	10583778	+	asmbl_7939	none	STRG.15029.1	1	STRG.15029.2	1
scaffold_14	alt_donor	8399335	8399336	-	asmbl_13301,asmbl_13302	none	STRG.17279.2,STRG.17279.3,blat.proc3825156.chain_2084,blat.proc3825156.chain_2087	4	STRG.17279.1,blat.proc3825156.chain_2088	2
scaffold_26	alternate_exon	9609151	9609701	+	asmbl_35250	none	blat.proc3825178.chain_1634	1	STRG.28513.3	1
scaffold_11	alternate_exon	5656799	5659475	+	asmbl_5575	none	STRG.13631.1,Trinity_GG_24810_c0_g1_i1,blat.proc3825170.chain_2161	3	STRG.13631.2	1
scaffold_6	starts_in_intron	2908436	2908436	+	asmbl_46789,asmbl_46790	none	STRG.7298.2,blat.proc3825166.chain_3530	2	Trinity_GG_21339_c0_g1_i1,Trinity_GG_21339_c0_g1_i9,blat.proc3825166.chain_3531	3
scaffold_25	ends_in_intron	3763362	3763362	+	asmbl_33465	none	blat.proc3825178.chain_433,blat.proc3825178.chain_434	2	STRG.27332.1,blat.proc3825178.chain_435	2
scaffold_9	alt_donor	9990766	9990767	-	asmbl_55248	none	STRG.11363.2,blat.proc3825152.chain_3536	2	STRG.11363.1,blat.proc3825152.chain_3538	2
scaffold_20	ends_in_intron	4386121	4386121	+	asmbl_26587	none	blat.proc3825176.chain_300	1	STRG.23125.1,STRG.23125.2,blat.proc3825176.chain_298,blat.proc3825176.chain_299	4
scaffold_9	skipped_exon	9722574	9723219	+	asmbl_54244	none	blat.proc3825170.chain_150	1	STRG.11350.1,blat.proc3825170.chain_151	2
scaffold_9	retained_intron	16664696	16665148	-	asmbl_55610	none	blat.proc3825154.chain_187	1	STRG.11805.1,blat.proc3825154.chain_186	2
scaffold_12	alt_donor	5566635	5566636	-	asmbl_8505	none	STRG.14712.1,blat.proc3825154.chain_3199	2	STRG.14712.2,blat.proc3825154.chain_3200	2
scaffold_13	retained_exon	8805849	8805902	-	asmbl_9983,asmbl_9984,asmbl_9985	none	blat.proc3825156.chain_1065,blat.proc3825156.chain_1067,blat.proc3825156.chain_1070	3	blat.proc3825156.chain_1072	1
scaffold_3	alternate_exon	799227	802365	-	asmbl_38677	none	STRG.2908.1,blat.proc3825148.chain_2794	2	STRG.2908.3	1
scaffold_23	skipped_exon	7938919	7940270	-	asmbl_31066	none	STRG.26099.2	1	STRG.26099.3,Trinity_GG_14574_c2_g1_i1,blat.proc3825160.chain_3215,blat.proc3825160.chain_3216,blat.proc3825160.chain_3217	5
scaffold_18	starts_in_intron	11556965	11556965	+	asmbl_20947	none	blat.proc3825174.chain_2711	1	STRG.21683.1,blat.proc3825174.chain_2710	2
scaffold_26	spliced_intron	6350865	6351295	-	asmbl_35682	none	STRG.28335.5	1	STRG.28335.4,blat.proc3825162.chain_1569	2
scaffold_5	starts_in_intron	3533188	3533188	-	asmbl_43917	none	blat.proc3825150.chain_2031	1	STRG.5827.1,STRG.5827.2,Trinity_GG_3282_c0_g1_i1,blat.proc3825150.chain_2032	4
scaffold_15	retained_intron	12748286	12748489	+	asmbl_15603	none	blat.proc3825172.chain_3380	1	STRG.18732.1,STRG.18732.2,blat.proc3825172.chain_3377,blat.proc3825172.chain_3378,blat.proc3825172.chain_3379	5
scaffold_2	starts_in_intron	18536013	18536013	-	asmbl_23790	none	Trinity_GG_1464_c0_g1_i2,blat.proc3825148.chain_2611	2	STRG.2724.1,Trinity_GG_1464_c0_g1_i1,blat.proc3825148.chain_2612	3
scaffold_5	alt_acceptor	1082474	1082475	-	asmbl_43816	none	STRG.5659.1,Trinity_GG_3195_c0_g1_i3,blat.proc3825150.chain_1885	3	STRG.5659.2	1
scaffold_27	alternate_exon	1779721	1779870	-	asmbl_36788	none	STRG.28666.2,blat.proc3825162.chain_1925	2	STRG.28666.1,blat.proc3825162.chain_1924	2
scaffold_4	retained_intron	11986664	11986803	-	asmbl_42887	none	STRG.4849.1,Trinity_GG_2680_c0_g1_i1,blat.proc3825150.chain_1001	3	Trinity_GG_2680_c0_g1_i2,blat.proc3825150.chain_1002	2
scaffold_22	starts_in_intron	10005445	10005445	+	asmbl_30335	none	Trinity_GG_31336_c0_g1_i1,blat.proc3825176.chain_2410	2	STRG.25343.1,blat.proc3825176.chain_2411	2
scaffold_3	alternate_exon	11975635	11978457	+	asmbl_40383	none	STRG.3620.2,Trinity_GG_19308_c0_g1_i1,Trinity_GG_19308_c2_g1_i1,blat.proc3825166.chain_50,blat.proc3825166.chain_53	5	Trinity_GG_19308_c0_g1_i3,blat.proc3825166.chain_48	2
scaffold_11	retained_intron	38298	38788	+	asmbl_5255	none	STRG.13238.3	1	blat.proc3825170.chain_1799	1
scaffold_10	alt_acceptor	5812208	5812209	+	asmbl_3203,asmbl_3204	none	STRG.12403.1,STRG.12403.2,blat.proc3825170.chain_1095,blat.proc3825170.chain_1097	4	STRG.12403.3,blat.proc3825170.chain_1096	2
scaffold_6	spliced_intron	9365865	9366049	-	asmbl_48621	none	STRG.7806.1,blat.proc3825152.chain_143	2	blat.proc3825152.chain_142	1
scaffold_11	alternate_exon	8248351	8248937	-	asmbl_6853	none	Trinity_GG_7744_c0_g1_i1,blat.proc3825154.chain_2397	2	STRG.13833.1	1
scaffold_7	alt_donor	15267685	15267686	+	asmbl_50427,asmbl_50431	none	STRG.9546.1,blat.proc3825168.chain_2120	2	STRG.9546.2,STRG.9546.3,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123	4
scaffold_7	spliced_intron	8507767	8508686	+	asmbl_50000,asmbl_50006	none	STRG.9078.3,blat.proc3825168.chain_1607,blat.proc3825168.chain_1609	3	STRG.9078.2,blat.proc3825168.chain_1605	2
scaffold_28	retained_exon	3839986	3840025	+	asmbl_37493	none	STRG.29579.2,blat.proc3825178.chain_2780	2	STRG.29579.1,blat.proc3825178.chain_2778	2
scaffold_21	starts_in_intron	11274609	11274609	-	asmbl_28115,asmbl_28118	none	STRG.24607.4,blat.proc3825160.chain_1823	2	STRG.24607.1,STRG.24607.2,blat.proc3825160.chain_1824,blat.proc3825160.chain_1825,blat.proc3825160.chain_1827	5
scaffold_5	alt_donor	10582610	10582611	-	asmbl_44369	none	STRG.6345.1,blat.proc3825150.chain_2552	2	STRG.6345.2	1
scaffold_17	spliced_intron	14729874	14729921	+	asmbl_19424	none	STRG.20946.2	1	STRG.20946.1,Trinity_GG_28815_c0_g1_i1,blat.proc3825174.chain_1839	3
scaffold_21	alt_acceptor	1053775	1053776	-	asmbl_27374,asmbl_27380	none	STRG.23787.2,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922	3	STRG.23787.1,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	3
scaffold_15	spliced_intron	11301555	11302007	+	asmbl_15491,asmbl_15494	none	STRG.18603.1,blat.proc3825172.chain_3162,blat.proc3825172.chain_3163	3	blat.proc3825172.chain_3166	1
scaffold_15	alt_donor	12742614	12742615	+	asmbl_15600	none	STRG.18732.2,blat.proc3825172.chain_3379	2	STRG.18732.1,blat.proc3825172.chain_3378	2
scaffold_15	spliced_intron	15409801	15410182	+	asmbl_15772	none	STRG.18930.10	1	STRG.18930.4,blat.proc3825172.chain_3591	2
scaffold_21	alternate_exon	3125162	3125225	-	asmbl_27519	none	STRG.23943.1	1	STRG.23943.2,STRG.23943.3,STRG.23943.4,Trinity_GG_13335_c0_g1_i1,blat.proc3825160.chain_1056,blat.proc3825160.chain_1057,blat.proc3825160.chain_1058,blat.proc3825160.chain_1060	8
scaffold_1	alt_acceptor	19359455	19359456	+	asmbl_2591	none	STRG.1351.2	1	STRG.1351.1,Trinity_GG_18099_c0_g1_i1,blat.proc3825164.chain_1470	3
scaffold_3	alt_donor	12906304	12906305	-	asmbl_39237	none	STRG.3674.1,blat.proc3825148.chain_3547	2	STRG.3674.2,blat.proc3825148.chain_3546	2
scaffold_17	alt_acceptor	4723111	4723112	-	asmbl_17887	none	STRG.20207.1	1	STRG.20207.2	1
scaffold_4	alt_acceptor	14436354	14436355	+	asmbl_41872	none	STRG.5059.1,blat.proc3825166.chain_1472	2	STRG.5059.2	1
scaffold_10	ends_in_intron	9062375	9062375	-	asmbl_4663	none	Trinity_GG_7041_c0_g1_i7,blat.proc3825154.chain_1201	2	STRG.12655.1,STRG.12655.2,blat.proc3825154.chain_1198,blat.proc3825154.chain_1202	4
scaffold_7	retained_exon	13960459	13960664	+	asmbl_50390	none	STRG.9495.1,Trinity_GG_22592_c0_g1_i1,blat.proc3825168.chain_2025,blat.proc3825168.chain_2028	4	blat.proc3825168.chain_2027	1
scaffold_24	spliced_intron	6833657	6834175	+	asmbl_32347,asmbl_32348	none	STRG.26736.1,STRG.26736.4,blat.proc3825176.chain_3729	3	Trinity_GG_32116_c2_g1_i1,blat.proc3825176.chain_3730,blat.proc3825176.chain_3736	3
scaffold_7	retained_exon	9665700	9665745	+	asmbl_50087	none	STRG.9154.2	1	STRG.9154.1,blat.proc3825168.chain_1680	2
scaffold_4	starts_in_intron	8628576	8628576	+	asmbl_41569	none	Trinity_GG_19921_c0_g1_i1,blat.proc3825166.chain_1138	2	STRG.4682.1,STRG.4682.2,blat.proc3825166.chain_1139,blat.proc3825166.chain_1140	4
scaffold_1	alternate_exon	20009772	20009906	+	asmbl_2603	none	STRG.1368.2	1	STRG.1368.1,Trinity_GG_18075_c0_g1_i2,blat.proc3825164.chain_1433	3
scaffold_15	spliced_intron	13041931	13042295	+	asmbl_15614	none	STRG.18741.1,Trinity_GG_27606_c0_g2_i2,blat.proc3825172.chain_3406	3	Trinity_GG_27606_c0_g2_i3,blat.proc3825172.chain_3407,blat.proc3825172.chain_3409	3
scaffold_5	retained_intron	4696426	4696467	+	asmbl_45287	none	STRG.5925.1	1	STRG.5925.2	1
scaffold_14	spliced_intron	2573325	2573401	+	asmbl_11879	none	STRG.16865.1,Trinity_GG_26589_c0_g1_i1,blat.proc3825172.chain_1641	3	Trinity_GG_26589_c0_g1_i2,Trinity_GG_26589_c0_g1_i3,blat.proc3825172.chain_1642,blat.proc3825172.chain_1643	4
scaffold_13	ends_in_intron	1798528	1798528	-	asmbl_9430	none	blat.proc3825156.chain_434	1	STRG.15527.1	1
scaffold_20	alternate_exon	10695919	10696154	+	asmbl_26984	none	STRG.23601.2,blat.proc3825176.chain_792	2	STRG.23601.1,STRG.23601.3,blat.proc3825176.chain_791	3
scaffold_14	alt_acceptor	15517183	15517184	-	asmbl_13730	none	STRG.17792.2	1	STRG.17792.3	1
scaffold_18	retained_intron	1904443	1905350	-	asmbl_19653,asmbl_19656	none	STRG.21081.10,STRG.21081.3,Trinity_GG_11794_c1_g1_i1,blat.proc3825158.chain_2021	4	STRG.21081.6,STRG.21081.8,Trinity_GG_11794_c0_g2_i1,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2017	6
scaffold_5	alt_donor	10541420	10541421	+	asmbl_45683	none	STRG.6343.1	1	STRG.6343.2,Trinity_GG_20774_c0_g1_i1,blat.proc3825166.chain_2558	3
scaffold_18	retained_exon	3915822	3916386	-	asmbl_19785	none	STRG.21203.5	1	blat.proc3825158.chain_2160	1
scaffold_17	retained_intron	13962267	13962296	-	asmbl_18391,asmbl_18392,asmbl_18393	none	STRG.20883.3,Trinity_GG_11686_c1_g1_i1,blat.proc3825158.chain_1799,blat.proc3825158.chain_1800	4	STRG.20883.1,STRG.20883.2	2
scaffold_13	starts_in_intron	14180131	14180131	-	asmbl_10173	none	blat.proc3825156.chain_1254	1	STRG.16459.1,STRG.16459.2,blat.proc3825156.chain_1255,blat.proc3825156.chain_1256	4
scaffold_12	alternate_exon	7507621	7509240	-	asmbl_8591	none	Trinity_GG_8280_c1_g1_i1,blat.proc3825154.chain_3353	2	STRG.14832.2	1
scaffold_6	spliced_intron	3218305	3218462	-	asmbl_48232,asmbl_48233	none	STRG.7327.1,blat.proc3825150.chain_3410	2	STRG.7327.2,STRG.7327.3,blat.proc3825150.chain_3411,blat.proc3825150.chain_3412	4
scaffold_8	alt_donor	6809263	6809264	-	asmbl_51889,asmbl_51890	none	STRG.10044.1,blat.proc3825152.chain_2305,blat.proc3825152.chain_2306	3	STRG.10044.3	1
scaffold_15	ends_in_intron	4235225	4235225	+	asmbl_15137	none	blat.proc3825172.chain_2825	1	STRG.18168.1,blat.proc3825172.chain_2824	2
scaffold_11	alt_acceptor	9285059	9285060	+	asmbl_5885	none	STRG.13971.1	1	STRG.13971.2,Trinity_GG_25028_c0_g1_i1,Trinity_GG_25028_c0_g1_i2,blat.proc3825170.chain_2543,blat.proc3825170.chain_2544	5
scaffold_4	starts_in_intron	6350189	6350189	+	asmbl_41405	none	Trinity_GG_19807_c0_g1_i1,blat.proc3825166.chain_952	2	STRG.4505.1,Trinity_GG_19807_c0_g1_i3,blat.proc3825166.chain_953	3
scaffold_2	ends_in_intron	5200909	5200909	+	asmbl_24397	none	blat.proc3825164.chain_2047	1	STRG.1940.1,STRG.1940.2,STRG.1940.3,Trinity_GG_18384_c0_g1_i3,blat.proc3825164.chain_2048	5
scaffold_13	starts_in_intron	15038095	15038095	-	asmbl_10224	none	blat.proc3825156.chain_1378	1	STRG.16553.2,blat.proc3825156.chain_1379	2
scaffold_13	ends_in_intron	6046656	6046656	-	asmbl_9764	none	Trinity_GG_8939_c0_g2_i1,blat.proc3825156.chain_785	2	STRG.15915.2,STRG.15915.4,blat.proc3825156.chain_780,blat.proc3825156.chain_784	4
scaffold_1	alternate_exon	975598	975631	-	asmbl_38,asmbl_42	none	STRG.58.1,blat.proc3825148.chain_78,blat.proc3825148.chain_79	3	STRG.58.2,blat.proc3825148.chain_81	2
scaffold_23	alternate_exon	6859840	6860549	-	asmbl_30985	none	Trinity_GG_14570_c0_g1_i10,blat.proc3825160.chain_3200	2	STRG.26018.3	1
scaffold_2	starts_in_intron	4570439	4570439	+	asmbl_24356	none	Trinity_GG_18350_c0_g1_i1,blat.proc3825164.chain_1996	2	STRG.1882.1,blat.proc3825164.chain_1995	2
scaffold_17	alternate_exon	8622437	8622815	+	asmbl_19004	none	STRG.20473.4,blat.proc3825174.chain_1335,blat.proc3825174.chain_1339	3	STRG.20473.5,blat.proc3825174.chain_1334	2
scaffold_6	spliced_intron	5002265	5002285	+	asmbl_46904	none	STRG.7473.1	1	Trinity_GG_21391_c0_g1_i1	1
scaffold_9	spliced_intron	12436520	12436852	+	asmbl_54432	none	blat.proc3825170.chain_342	1	STRG.11558.1,Trinity_GG_23748_c0_g1_i1,blat.proc3825170.chain_343	3
scaffold_3	alt_donor	10276182	10276183	+	asmbl_40248,asmbl_40251	none	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3	blat.proc3825164.chain_3735	1
scaffold_27	starts_in_intron	5785987	5785987	-	asmbl_37020	none	blat.proc3825162.chain_2193	1	STRG.28981.1,blat.proc3825162.chain_2191	2
scaffold_11	alt_donor	12905445	12905446	-	asmbl_7105	none	blat.proc3825154.chain_2732	1	STRG.14175.1,STRG.14175.2	2
scaffold_13	retained_intron	7717856	7718018	-	asmbl_9905	none	blat.proc3825156.chain_889	1	STRG.16058.2,blat.proc3825156.chain_888,blat.proc3825156.chain_891	3
scaffold_11	alt_donor	7049051	7049052	+	asmbl_5644,asmbl_5645,asmbl_5647,asmbl_5648,asmbl_5650	none	STRG.13733.1,STRG.13733.4,STRG.13733.5,Trinity_GG_24878_c0_g1_i2,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i6,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2271,blat.proc3825170.chain_2272,blat.proc3825170.chain_2273	11	Trinity_GG_24878_c0_g1_i3,blat.proc3825170.chain_2274	2
scaffold_11	alt_donor	6109928	6109929	-	asmbl_6696	none	Trinity_GG_7620_c0_g1_i2,blat.proc3825154.chain_2187	2	STRG.13675.2,Trinity_GG_7620_c0_g1_i1,blat.proc3825154.chain_2188	3
scaffold_23	alternate_exon	4313092	4313156	-	asmbl_30857	none	blat.proc3825160.chain_3041	1	blat.proc3825160.chain_3042	1
scaffold_18	alternate_exon	1967427	1967465	-	asmbl_19675	none	STRG.21086.2,blat.proc3825158.chain_2041	2	STRG.21086.1,blat.proc3825158.chain_2042	2
scaffold_25	alt_acceptor	7905410	7905411	-	asmbl_34415	none	blat.proc3825162.chain_920	1	blat.proc3825162.chain_919	1
scaffold_10	retained_intron	8917449	8918183	+	asmbl_3341	none	STRG.12642.1,blat.proc3825170.chain_1197	2	STRG.12642.2,blat.proc3825170.chain_1194	2
scaffold_23	skipped_exon	4099715	4101045	-	asmbl_30832	none	STRG.25826.1	1	STRG.25826.2,blat.proc3825160.chain_3031	2
scaffold_17	retained_intron	14874491	14874578	+	asmbl_19431	none	STRG.20953.1	1	blat.proc3825174.chain_1841	1
scaffold_4	retained_intron	5230743	5231130	-	asmbl_42572,asmbl_42575	none	STRG.4416.1,Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_650,blat.proc3825150.chain_651	4	STRG.4416.3,STRG.4416.5,blat.proc3825150.chain_649	3
scaffold_11	alt_donor	3024724	3024725	+	asmbl_5397	none	STRG.13434.3	1	STRG.13434.1,STRG.13434.2,blat.proc3825170.chain_1879,blat.proc3825170.chain_1880	4
scaffold_19	retained_intron	12972587	12972817	-	asmbl_22574	none	STRG.22618.3,Trinity_GG_12569_c0_g1_i5,blat.proc3825158.chain_3361	3	STRG.22618.1,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3363	5
scaffold_1	alternate_exon	18339047	18339122	+	asmbl_2555	none	STRG.1292.2	1	STRG.1292.3,STRG.1292.4,blat.proc3825164.chain_1358	3
scaffold_7	spliced_intron	6042028	6042598	-	asmbl_50910	none	STRG.8910.3,blat.proc3825152.chain_1341	2	STRG.8910.1,STRG.8910.2,STRG.8910.4,STRG.8910.5,Trinity_GG_5061_c0_g1_i13,Trinity_GG_5061_c0_g1_i3,Trinity_GG_5061_c0_g1_i4,blat.proc3825152.chain_1342,blat.proc3825152.chain_1344,blat.proc3825152.chain_1346,blat.proc3825152.chain_1347,blat.proc3825152.chain_1348,blat.proc3825152.chain_1349	13
scaffold_5	alt_acceptor	18174150	18174151	+	asmbl_46207	none	STRG.6956.2	1	STRG.6956.1,blat.proc3825166.chain_3177	2
scaffold_8	alt_donor	9126259	9126260	-	asmbl_52007,asmbl_52008,asmbl_52012	none	STRG.10172.1,STRG.10172.3,blat.proc3825152.chain_2389	3	STRG.10172.2,STRG.10172.4,blat.proc3825152.chain_2387	3
scaffold_5	retained_intron	8070415	8070604	+	asmbl_45522,asmbl_45524	none	STRG.6170.2,STRG.6170.3,Trinity_GG_20662_c0_g1_i2,blat.proc3825166.chain_2346	4	STRG.6170.1,blat.proc3825166.chain_2347	2
scaffold_1	skipped_exon	14320593	14321243	+	asmbl_2379,asmbl_2381	none	STRG.1027.1,blat.proc3825164.chain_1222,blat.proc3825164.chain_1223	3	blat.proc3825164.chain_1225	1
scaffold_6	spliced_intron	13988163	13988265	-	asmbl_48974	none	blat.proc3825152.chain_615	1	STRG.8159.1,blat.proc3825152.chain_614	2
scaffold_6	spliced_intron	18077604	18078336	+	asmbl_47813	none	STRG.8492.2	1	STRG.8492.1,Trinity_GG_21993_c0_g1_i3,Trinity_GG_21993_c1_g1_i1,blat.proc3825168.chain_972,blat.proc3825168.chain_976	5
scaffold_2	spliced_intron	16413485	16413596	-	asmbl_23688,asmbl_23689,asmbl_23691,asmbl_23692	none	STRG.2587.1,STRG.2587.2,blat.proc3825148.chain_2556,blat.proc3825148.chain_2557,blat.proc3825148.chain_2559	5	blat.proc3825148.chain_2558	1
scaffold_506	retained_intron	2749	3028	+	asmbl_46502	none	blat.proc3825178.chain_3450	1	STRG.30354.2,blat.proc3825178.chain_3451	2
scaffold_14	alternate_exon	11077372	11077406	-	asmbl_13444	none	STRG.17446.3,blat.proc3825156.chain_2240	2	STRG.17446.2	1
scaffold_6	ends_in_intron	1748048	1748048	+	asmbl_46735,asmbl_46738,asmbl_46740,asmbl_46741	none	STRG.7231.2,STRG.7231.3,STRG.7231.5,blat.proc3825166.chain_3353,blat.proc3825166.chain_3354	5	STRG.7231.1,STRG.7231.4,blat.proc3825166.chain_3352	3
scaffold_5	spliced_intron	12842021	12842175	+	asmbl_45825,asmbl_45827,asmbl_45828,asmbl_45829	none	STRG.6517.1,STRG.6517.4,Trinity_GG_20807_c0_g1_i1,Trinity_GG_20807_c0_g1_i2,blat.proc3825166.chain_2619,blat.proc3825166.chain_2620,blat.proc3825166.chain_2621	7	STRG.6517.2,STRG.6517.3,Trinity_GG_20807_c0_g1_i3,blat.proc3825166.chain_2622	4
scaffold_28	retained_intron	2810466	2811309	-	asmbl_38086,asmbl_38089,asmbl_38090,asmbl_38091	none	STRG.29471.2,STRG.29471.4,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	4	STRG.29471.3,blat.proc3825162.chain_2598	2
scaffold_20	spliced_intron	1092927	1093085	+	asmbl_26406	none	STRG.22816.1	1	Trinity_GG_29908_c0_g1_i2	1
scaffold_4	alt_donor	18291778	18291779	+	asmbl_42092	none	STRG.5428.1,blat.proc3825166.chain_1743	2	STRG.5428.2,STRG.5428.4,STRG.5428.5,blat.proc3825166.chain_1744,blat.proc3825166.chain_1745	5
scaffold_10	starts_in_intron	12049987	12049987	+	asmbl_3524	none	STRG.12840.2	1	STRG.12840.1,Trinity_GG_24387_c0_g1_i1,Trinity_GG_24387_c0_g1_i2,Trinity_GG_24388_c1_g1_i1,blat.proc3825170.chain_1440,blat.proc3825170.chain_1441,blat.proc3825170.chain_1443	7
scaffold_2	alternate_exon	2878742	2880762	-	asmbl_22938,asmbl_22940,asmbl_22941	none	blat.proc3825148.chain_1667,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672	3	blat.proc3825148.chain_1666	1
scaffold_24	retained_exon	9592748	9593059	-	asmbl_33137	none	STRG.26947.1,blat.proc3825162.chain_297	2	STRG.26947.2	1
scaffold_20	spliced_intron	4262299	4262354	-	asmbl_25730	none	STRG.23110.1	1	STRG.23110.2	1
scaffold_2	alt_acceptor	20209547	20209548	+	asmbl_25307	none	STRG.2859.2	1	STRG.2859.1,blat.proc3825164.chain_3093	2
scaffold_2	spliced_intron	3764034	3764093	-	asmbl_22998	none	blat.proc3825148.chain_1734	1	STRG.1808.1	1
scaffold_5	ends_in_intron	18263021	18263021	+	asmbl_46237,asmbl_46241	none	STRG.6968.4,Trinity_GG_21147_c0_g1_i1,blat.proc3825166.chain_3183	3	STRG.6968.2,blat.proc3825166.chain_3188,blat.proc3825166.chain_3191	3
scaffold_1	starts_in_intron	12978891	12978891	+	asmbl_2293	none	blat.proc3825164.chain_1041	1	STRG.935.1,Trinity_GG_17845_c0_g1_i6,blat.proc3825164.chain_1042,blat.proc3825164.chain_1043,blat.proc3825164.chain_1044,blat.proc3825164.chain_1047	6
scaffold_21	retained_intron	7327012	7327159	-	asmbl_27797	none	blat.proc3825160.chain_1403	1	STRG.24258.1,blat.proc3825160.chain_1406	2
scaffold_20	spliced_intron	8338716	8338886	-	asmbl_25979,asmbl_25985,asmbl_25986	none	STRG.23378.2,STRG.23378.3,blat.proc3825160.chain_507,blat.proc3825160.chain_512	4	STRG.23378.1,blat.proc3825160.chain_506,blat.proc3825160.chain_508,blat.proc3825160.chain_509,blat.proc3825160.chain_510	5
scaffold_20	alt_donor	253914	253915	-	asmbl_25478	none	STRG.22719.3	1	STRG.22719.2,STRG.22719.4	2
scaffold_20	retained_intron	10249426	10249538	-	asmbl_26098	none	blat.proc3825160.chain_662	1	STRG.23572.1,blat.proc3825160.chain_660,blat.proc3825160.chain_663	3
scaffold_27	starts_in_intron	3090975	3090975	-	asmbl_36888	none	blat.proc3825162.chain_2067	1	STRG.28796.1,STRG.28796.2,STRG.28796.3,STRG.28796.4,STRG.28796.5,STRG.28796.6,blat.proc3825162.chain_2064,blat.proc3825162.chain_2065,blat.proc3825162.chain_2068,blat.proc3825162.chain_2069	10
scaffold_6	alt_donor	4536417	4536418	-	asmbl_48336	none	STRG.7434.1,blat.proc3825150.chain_3583	2	STRG.7434.5	1
scaffold_3	alternate_exon	3244021	3249029	+	asmbl_39946	none	STRG.3072.4	1	STRG.3072.6,Trinity_GG_19083_c2_g1_i1,blat.proc3825164.chain_3396	3
scaffold_13	starts_in_intron	2872352	2872352	-	asmbl_9488	none	blat.proc3825156.chain_474	1	STRG.15590.1,blat.proc3825156.chain_472,blat.proc3825156.chain_473,blat.proc3825156.chain_475	4
scaffold_16	alt_acceptor	14489319	14489320	+	asmbl_16681	none	STRG.19826.1	1	STRG.19826.2,blat.proc3825174.chain_747	2
scaffold_5	starts_in_intron	10381149	10381149	-	asmbl_44355	none	blat.proc3825150.chain_2519	1	STRG.6339.1,STRG.6339.2,blat.proc3825150.chain_2516,blat.proc3825150.chain_2517,blat.proc3825150.chain_2518	5
scaffold_6	retained_intron	797115	797273	-	asmbl_48070	none	STRG.7142.3	1	STRG.7142.1,STRG.7142.2,blat.proc3825150.chain_3254	3
scaffold_27	retained_intron	2881786	2881921	+	asmbl_36147	none	blat.proc3825178.chain_1942	1	STRG.28771.1,STRG.28771.2,STRG.28771.3,blat.proc3825178.chain_1938,blat.proc3825178.chain_1940,blat.proc3825178.chain_1941,blat.proc3825178.chain_1943	7
scaffold_2	alt_donor	1258320	1258321	-	asmbl_22839	none	STRG.1587.1	1	blat.proc3825164.chain_1742	1
scaffold_13	alt_acceptor	2354608	2354609	+	asmbl_10594	none	STRG.15564.12	1	STRG.15564.11,STRG.15564.2,STRG.15564.5	3
scaffold_25	skipped_exon	5428517	5429201	+	asmbl_33565	none	blat.proc3825178.chain_458	1	STRG.27454.1,blat.proc3825178.chain_459	2
scaffold_1	starts_in_intron	3654578	3654578	-	asmbl_169	none	blat.proc3825148.chain_209	1	STRG.237.1,blat.proc3825148.chain_208	2
scaffold_18	starts_in_intron	1900795	1900795	-	asmbl_19657,asmbl_19662,asmbl_19664	none	STRG.21081.7,STRG.21081.9,blat.proc3825158.chain_2010	3	STRG.21081.10,STRG.21081.3,STRG.21081.6,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	10
scaffold_2	spliced_intron	1302136	1302291	+	asmbl_24177	none	STRG.1609.3,Trinity_GG_18242_c0_g1_i2,blat.proc3825164.chain_1790	3	STRG.1609.2,Trinity_GG_18242_c0_g1_i1,blat.proc3825164.chain_1789	3
scaffold_10	ends_in_intron	8985122	8985122	-	asmbl_4653	none	Trinity_GG_7076_c0_g1_i2,blat.proc3825154.chain_1282	2	STRG.12651.1,blat.proc3825154.chain_1280	2
scaffold_2	starts_in_intron	15482813	15482813	+	asmbl_25050	none	blat.proc3825164.chain_2786	1	STRG.2498.1,blat.proc3825164.chain_2785	2
scaffold_10	retained_exon	987263	987376	-	asmbl_4024,asmbl_4026	none	STRG.11983.1,STRG.11983.2,blat.proc3825154.chain_497	3	STRG.11983.3	1
scaffold_20	ends_in_intron	11677782	11677782	-	asmbl_26181,asmbl_26182	none	blat.proc3825160.chain_758,blat.proc3825160.chain_761	2	STRG.23672.1,STRG.23672.2,STRG.23672.3,blat.proc3825160.chain_757,blat.proc3825160.chain_759,blat.proc3825160.chain_760	6
scaffold_17	retained_intron	2685101	2685190	+	asmbl_18681	none	Trinity_GG_28247_c0_g1_i6,blat.proc3825174.chain_850	2	STRG.20069.1,STRG.20069.2,STRG.20069.3,blat.proc3825174.chain_848,blat.proc3825174.chain_849,blat.proc3825174.chain_851,blat.proc3825174.chain_852	7
scaffold_3	retained_intron	19884864	19885175	-	asmbl_39670,asmbl_39673	none	Trinity_GG_2243_c1_g1_i6,blat.proc3825150.chain_247,blat.proc3825150.chain_249	3	STRG.4100.1,Trinity_GG_2243_c1_g1_i1,Trinity_GG_2243_c1_g1_i7,blat.proc3825150.chain_244,blat.proc3825150.chain_246	5
scaffold_11	alt_acceptor	6712073	6712074	-	asmbl_6735,asmbl_6738,asmbl_6740	none	STRG.13716.1,STRG.13716.4,blat.proc3825154.chain_2286,blat.proc3825154.chain_2287	4	STRG.13716.2	1
scaffold_8	alt_donor	18420298	18420299	-	asmbl_52540	none	STRG.10740.1,Trinity_GG_5972_c0_g1_i1,blat.proc3825152.chain_3009	3	STRG.10740.2,Trinity_GG_5972_c0_g1_i3,blat.proc3825152.chain_3008	3
scaffold_14	alt_donor	10473803	10473804	+	asmbl_12318	none	STRG.17397.2	1	STRG.17397.1	1
scaffold_25	skipped_exon	2689826	2691172	+	asmbl_33402,asmbl_33404	none	STRG.27234.2,blat.proc3825178.chain_309	2	STRG.27234.1	1
scaffold_8	retained_intron	5216070	5216193	-	asmbl_51827	none	STRG.9968.2,Trinity_GG_5523_c0_g1_i1,blat.proc3825152.chain_2158	3	STRG.9968.1,Trinity_GG_5523_c0_g1_i2,blat.proc3825152.chain_2159	3
scaffold_9	skipped_exon	8395341	8395973	+	asmbl_54171	none	blat.proc3825170.chain_62	1	STRG.11261.4	1
scaffold_21	spliced_intron	1171743	1171837	-	asmbl_27383,asmbl_27385	none	STRG.23798.1,STRG.23798.2,blat.proc3825160.chain_936	3	blat.proc3825160.chain_935	1
scaffold_13	spliced_intron	4459323	4459424	+	asmbl_10793,asmbl_10794,asmbl_10796,asmbl_10797,asmbl_10799	none	STRG.15770.1,STRG.15770.2,STRG.15770.3,STRG.15770.4,blat.proc3825172.chain_509,blat.proc3825172.chain_510,blat.proc3825172.chain_511	7	Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_512	2
scaffold_22	retained_intron	4225894	4226332	-	asmbl_29212,asmbl_29222,asmbl_29223,asmbl_29225,asmbl_29227	none	STRG.24845.1,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2078	6	STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2074,blat.proc3825160.chain_2076,blat.proc3825160.chain_2079	5
scaffold_28	alt_donor	2117264	2117265	+	asmbl_37326	none	STRG.29369.2	1	STRG.29369.1,blat.proc3825178.chain_2573	2
scaffold_10	skipped_exon	6674039	6675082	-	asmbl_4487	none	blat.proc3825154.chain_1063	1	blat.proc3825154.chain_1064	1
scaffold_9	retained_intron	13640033	13640444	+	asmbl_54510	none	STRG.11651.1,Trinity_GG_23805_c0_g1_i3,Trinity_GG_23805_c1_g1_i2,blat.proc3825170.chain_444,blat.proc3825170.chain_447	5	STRG.11651.2,blat.proc3825170.chain_445	2
scaffold_13	ends_in_intron	1216045	1216045	+	asmbl_10541	none	STRG.15491.1	1	STRG.15491.2,Trinity_GG_25836_c0_g1_i1,blat.proc3825172.chain_262	3
scaffold_3	alternate_exon	18159942	18159988	-	asmbl_39596,asmbl_39597,asmbl_39598	none	STRG.4025.1,STRG.4025.2,STRG.4025.3,blat.proc3825150.chain_205,blat.proc3825150.chain_206	5	STRG.4025.4	1
scaffold_1	alternate_exon	20757070	20757415	+	asmbl_2654	none	blat.proc3825164.chain_1497	1	STRG.1422.2,blat.proc3825164.chain_1495,blat.proc3825164.chain_1496	3
scaffold_25	alt_acceptor	5567282	5567283	-	asmbl_34261	none	STRG.27457.1,Trinity_GG_15395_c0_g1_i2,blat.proc3825162.chain_820	3	STRG.27457.2,Trinity_GG_15395_c0_g1_i1,blat.proc3825162.chain_819	3
scaffold_5	alternate_exon	5737143	5738649	+	asmbl_45361,asmbl_45363	none	STRG.5992.4,STRG.5992.6,blat.proc3825166.chain_2131	3	STRG.5992.7,Trinity_GG_20545_c0_g1_i4,blat.proc3825166.chain_2132	3
scaffold_12	alternate_exon	7587423	7591171	-	asmbl_8599	none	STRG.14839.1,blat.proc3825154.chain_3348	2	Trinity_GG_8279_c0_g1_i1,blat.proc3825154.chain_3350	2
scaffold_1	ends_in_intron	7292088	7292088	-	asmbl_427	none	blat.proc3825148.chain_437	1	STRG.521.1,blat.proc3825148.chain_438	2
scaffold_17	spliced_intron	2719992	2720105	+	asmbl_18694	none	STRG.20072.1	1	STRG.20072.2,STRG.20072.3,Trinity_GG_28282_c0_g1_i2,blat.proc3825174.chain_904	4
scaffold_16	retained_intron	8042887	8043037	+	asmbl_16369,asmbl_16372,asmbl_16373	none	STRG.19448.1,Trinity_GG_27912_c0_g1_i2,Trinity_GG_27912_c0_g1_i5,Trinity_GG_27912_c0_g1_i6,blat.proc3825174.chain_274,blat.proc3825174.chain_276,blat.proc3825174.chain_277	7	STRG.19448.2,blat.proc3825174.chain_275,blat.proc3825174.chain_278	3
scaffold_11	skipped_exon	9149571	9150033	+	asmbl_5874	none	STRG.13954.1,blat.proc3825170.chain_2540	2	STRG.13954.2,blat.proc3825170.chain_2542	2
scaffold_16	retained_intron	11941207	11941371	+	asmbl_16614	none	STRG.19715.1	1	STRG.19715.2	1
scaffold_18	skipped_exon	8399580	8401325	+	asmbl_20834,asmbl_20836,asmbl_20837,asmbl_20839	none	STRG.21513.2,STRG.21513.3,STRG.21513.5,blat.proc3825174.chain_2581	4	STRG.21513.1,blat.proc3825174.chain_2580	2
scaffold_20	spliced_intron	5928434	5928707	-	asmbl_25795,asmbl_25796	none	STRG.23198.1,STRG.23198.2,blat.proc3825160.chain_284,blat.proc3825160.chain_285	4	Trinity_GG_12942_c0_g1_i3,Trinity_GG_12942_c0_g1_i4,blat.proc3825160.chain_282,blat.proc3825160.chain_283	4
scaffold_24	alt_acceptor	1338819	1338820	+	asmbl_32073	none	STRG.26392.2	1	STRG.26392.1	1
scaffold_11	ends_in_intron	17086153	17086153	-	asmbl_7245	none	Trinity_GG_8018_c0_g2_i1	1	STRG.14373.1,STRG.14373.3,STRG.14373.4,blat.proc3825154.chain_2882,blat.proc3825154.chain_2885,blat.proc3825154.chain_2886	6
scaffold_1	spliced_intron	8651374	8651512	-	asmbl_475	none	STRG.569.2,blat.proc3825148.chain_588	2	STRG.569.1,Trinity_GG_322_c1_g1_i3,blat.proc3825148.chain_589	3
scaffold_18	ends_in_intron	5905590	5905590	-	asmbl_19878	none	blat.proc3825158.chain_2262	1	STRG.21337.1	1
scaffold_14	spliced_intron	583074	583722	+	asmbl_11769	none	Trinity_GG_26527_c0_g1_i1,blat.proc3825172.chain_1519	2	STRG.16740.1,STRG.16740.4,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	4
scaffold_7	ends_in_intron	13812606	13812606	+	asmbl_50375	none	blat.proc3825168.chain_2016	1	STRG.9488.5	1
scaffold_10	retained_exon	1492349	1492523	-	asmbl_4063	none	STRG.12025.1,blat.proc3825154.chain_513	2	STRG.12025.2,STRG.12025.3,blat.proc3825154.chain_512	3
scaffold_10	alt_acceptor	8905456	8905457	-	asmbl_4641,asmbl_4643	none	STRG.12635.1,STRG.12635.2,blat.proc3825154.chain_1178	3	STRG.12635.3	1
scaffold_21	ends_in_intron	7425387	7425387	-	asmbl_27812	none	blat.proc3825160.chain_1447	1	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1445,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	6
scaffold_11	starts_in_intron	15790693	15790693	+	asmbl_6129	none	blat.proc3825170.chain_2842	1	STRG.14319.1,blat.proc3825170.chain_2843	2
scaffold_8	spliced_intron	6036917	6037004	+	asmbl_52932	none	STRG.10010.1,Trinity_GG_22892_c0_g1_i1,blat.proc3825168.chain_2586	3	Trinity_GG_22892_c0_g1_i3,Trinity_GG_22892_c0_g1_i4,blat.proc3825168.chain_2585,blat.proc3825168.chain_2587	4
scaffold_18	retained_exon	5905585	5905664	-	asmbl_19876,asmbl_19877	none	STRG.21337.2,STRG.21337.4	2	STRG.21337.1	1
scaffold_17	skipped_exon	6821270	6824128	-	asmbl_17993	none	blat.proc3825158.chain_1392	1	blat.proc3825158.chain_1393	1
scaffold_16	starts_in_intron	10085618	10085618	+	asmbl_16514	none	Trinity_GG_28061_c0_g1_i4,blat.proc3825174.chain_543	2	Trinity_GG_28061_c0_g1_i3,blat.proc3825174.chain_542	2
scaffold_27	ends_in_intron	1090805	1090805	+	asmbl_35988	none	blat.proc3825178.chain_1736	1	STRG.28606.1,STRG.28606.2,STRG.28606.3,blat.proc3825178.chain_1734,blat.proc3825178.chain_1735	5
scaffold_6	ends_in_intron	18048042	18048042	-	asmbl_49225,asmbl_49226	none	STRG.8487.3,STRG.8487.4,blat.proc3825152.chain_918	3	STRG.8487.2,blat.proc3825152.chain_919	2
scaffold_5	retained_exon	19029500	19029511	-	asmbl_44892	none	blat.proc3825150.chain_3133	1	STRG.7022.2,STRG.7022.4,STRG.7022.5,blat.proc3825150.chain_3131	4
scaffold_6	starts_in_intron	14014817	14014817	-	asmbl_48979	none	blat.proc3825152.chain_589	1	STRG.8156.1,blat.proc3825152.chain_588	2
scaffold_3	starts_in_intron	16348986	16348986	-	asmbl_39496,asmbl_39497,asmbl_39501	none	STRG.3910.3,blat.proc3825150.chain_115	2	STRG.3910.1,blat.proc3825150.chain_114	2
scaffold_7	alt_acceptor	9857451	9857452	-	asmbl_51092,asmbl_51094,asmbl_51095	none	STRG.9189.1,blat.proc3825152.chain_1466,blat.proc3825152.chain_1468,blat.proc3825152.chain_1469	4	STRG.9189.2,blat.proc3825152.chain_1467	2
scaffold_14	retained_intron	7216942	7217143	+	asmbl_12134	none	Trinity_GG_26721_c0_g1_i3,blat.proc3825172.chain_1868	2	STRG.17156.1,blat.proc3825172.chain_1869,blat.proc3825172.chain_1870,blat.proc3825172.chain_1871	4
scaffold_16	alt_donor	5447757	5447758	-	asmbl_17103,asmbl_17104	none	STRG.19301.1,STRG.19301.2,Trinity_GG_10851_c1_g1_i1,blat.proc3825158.chain_458	4	STRG.19301.3	1
scaffold_3	alternate_exon	1556183	1556313	-	asmbl_38720	none	blat.proc3825148.chain_2852	1	STRG.2986.2	1
scaffold_1	ends_in_intron	6253989	6253989	-	asmbl_332	none	STRG.421.2	1	STRG.421.1,Trinity_GG_222_c0_g1_i1,Trinity_GG_222_c0_g1_i4,blat.proc3825148.chain_383	4
scaffold_21	alt_donor	3162003	3162004	+	asmbl_28465,asmbl_28468,asmbl_28469,asmbl_28471,asmbl_28472	none	STRG.23959.4,STRG.23959.5,STRG.23959.6,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	5	STRG.23959.1,STRG.23959.2,STRG.23959.3,blat.proc3825176.chain_1132,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139	8
scaffold_10	alt_acceptor	10098146	10098147	-	asmbl_4707	none	STRG.12714.1,Trinity_GG_7109_c0_g1_i1,blat.proc3825154.chain_1324	3	Trinity_GG_7109_c0_g1_i2,blat.proc3825154.chain_1323	2
scaffold_26	alternate_exon	3335159	3335267	-	asmbl_35480	none	STRG.28012.1,blat.proc3825162.chain_1265	2	STRG.28012.2	1
scaffold_11	alternate_exon	1952254	1952313	+	asmbl_5348	none	blat.proc3825170.chain_1903	1	STRG.13354.1,blat.proc3825170.chain_1904	2
scaffold_25	starts_in_intron	8273316	8273316	-	asmbl_34429	none	Trinity_GG_15511_c0_g1_i1,blat.proc3825162.chain_1034	2	STRG.27661.1,blat.proc3825162.chain_1035	2
scaffold_28	alternate_exon	2438155	2438393	-	asmbl_38060	none	STRG.29420.2,blat.proc3825162.chain_2565	2	STRG.29420.1,blat.proc3825162.chain_2566	2
scaffold_15	retained_intron	2603301	2603322	+	asmbl_15070,asmbl_15071	none	STRG.18041.1,STRG.18041.2,Trinity_GG_27216_c0_g1_i1,blat.proc3825172.chain_2731	4	STRG.18041.3	1
scaffold_10	starts_in_intron	13472520	13472520	-	asmbl_4884,asmbl_4885	none	STRG.12943.1,STRG.12943.4,blat.proc3825154.chain_1531	3	STRG.12943.3	1
scaffold_17	spliced_intron	14546213	14546347	+	asmbl_19414	none	STRG.20928.2	1	STRG.20928.1,Trinity_GG_28807_c0_g1_i2,Trinity_GG_28807_c0_g1_i3	3
scaffold_22	alternate_exon	9896666	9899700	-	asmbl_29569	none	STRG.25333.1,blat.proc3825160.chain_2472	2	STRG.25334.1	1
scaffold_5	spliced_intron	5608890	5608962	+	asmbl_45352,asmbl_45353	none	STRG.5985.2,blat.proc3825166.chain_2202	2	blat.proc3825166.chain_2204	1
scaffold_5	retained_exon	10183252	10183263	-	asmbl_44318	none	blat.proc3825150.chain_2510	1	STRG.6318.1	1
scaffold_22	alternate_exon	11704071	11704230	+	asmbl_30416	none	STRG.25519.2	1	STRG.25519.1,Trinity_GG_31397_c0_g1_i1,blat.proc3825176.chain_2505	3
scaffold_6	retained_intron	15760487	15760603	-	asmbl_49083	none	Trinity_GG_4745_c0_g1_i4,blat.proc3825152.chain_760	2	STRG.8318.1,STRG.8318.2,STRG.8318.3,blat.proc3825152.chain_757,blat.proc3825152.chain_758,blat.proc3825152.chain_759	6
scaffold_3	alternate_exon	10304147	10306996	+	asmbl_40261	none	STRG.3476.2,Trinity_GG_19250_c0_g1_i1,Trinity_GG_19250_c1_g1_i2,Trinity_GG_19250_c3_g1_i1,blat.proc3825164.chain_3697,blat.proc3825164.chain_3699,blat.proc3825164.chain_3704	7	Trinity_GG_19250_c1_g1_i3,blat.proc3825164.chain_3698	2
scaffold_10	ends_in_intron	2664065	2664065	-	asmbl_4116	none	STRG.12081.2,blat.proc3825154.chain_638	2	STRG.12081.1,blat.proc3825154.chain_637	2
scaffold_3	starts_in_intron	11522754	11522754	+	asmbl_40357,asmbl_40358	none	Trinity_GG_19338_c0_g1_i1,Trinity_GG_19338_c0_g1_i2,blat.proc3825166.chain_101,blat.proc3825166.chain_98	4	STRG.3583.1,STRG.3583.2,blat.proc3825166.chain_100,blat.proc3825166.chain_99	4
scaffold_27	alternate_exon	2870589	2874138	+	asmbl_36137	none	STRG.28770.1,Trinity_GG_33207_c0_g1_i1,blat.proc3825178.chain_1861,blat.proc3825178.chain_1947	4	STRG.28770.3,blat.proc3825178.chain_1950	2
scaffold_13	alt_acceptor	4602251	4602252	-	asmbl_9650	none	STRG.15796.1	1	Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665	2
scaffold_27	alt_acceptor	6258606	6258607	+	asmbl_36394,asmbl_36397	none	STRG.29016.2,blat.proc3825178.chain_2193,blat.proc3825178.chain_2194	3	STRG.29016.3,blat.proc3825178.chain_2191	2
scaffold_6	alt_donor	3253841	3253842	+	asmbl_46823	none	STRG.7328.2,Trinity_GG_21294_c0_g1_i2	2	STRG.7328.1,Trinity_GG_21294_c0_g1_i1	2
scaffold_17	alt_donor	9825948	9825949	-	asmbl_18197,asmbl_18200,asmbl_18203	none	STRG.20598.2,STRG.20598.4,blat.proc3825158.chain_1556,blat.proc3825158.chain_1558	4	STRG.20598.1,STRG.20598.3,STRG.20598.5,blat.proc3825158.chain_1555,blat.proc3825158.chain_1557	5
scaffold_6	spliced_intron	17671975	17672065	+	asmbl_47776	none	STRG.8462.1,blat.proc3825168.chain_870	2	STRG.8462.3,Trinity_GG_21933_c0_g1_i6,blat.proc3825168.chain_865,blat.proc3825168.chain_866,blat.proc3825168.chain_868	5
scaffold_20	spliced_intron	5923668	5924973	-	asmbl_25790,asmbl_25792,asmbl_25793	none	STRG.23199.3,blat.proc3825160.chain_278,blat.proc3825160.chain_279,blat.proc3825160.chain_280	4	STRG.23199.1,STRG.23199.2,Trinity_GG_12941_c0_g1_i5,blat.proc3825160.chain_277,blat.proc3825160.chain_281	5
scaffold_4	retained_exon	247166	247322	+	asmbl_41093	none	STRG.4120.1	1	STRG.4120.2	1
scaffold_25	spliced_intron	1440431	1440581	+	asmbl_33377	none	STRG.27180.3	1	STRG.27180.1,STRG.27180.2,Trinity_GG_32306_c0_g1_i1,blat.proc3825178.chain_326,blat.proc3825178.chain_327	5
scaffold_21	starts_in_intron	460366	460366	-	asmbl_27326	none	blat.proc3825160.chain_871	1	blat.proc3825160.chain_870	1
scaffold_16	alt_acceptor	9360620	9360621	-	asmbl_17280	none	STRG.19532.1,Trinity_GG_10975_c0_g1_i1,blat.proc3825158.chain_677	3	STRG.19532.2	1
scaffold_14	spliced_intron	2128876	2129082	-	asmbl_12919	none	STRG.16836.1,blat.proc3825156.chain_1673	2	blat.proc3825156.chain_1672	1
scaffold_5	spliced_intron	4754616	4754915	+	asmbl_45294	none	STRG.5935.1,blat.proc3825166.chain_2143	2	blat.proc3825166.chain_2142	1
scaffold_8	alt_donor	9947049	9947050	-	asmbl_52082	none	STRG.10246.1,blat.proc3825152.chain_2516	2	STRG.10246.3,Trinity_GG_5714_c0_g1_i1,blat.proc3825152.chain_2514	3
scaffold_18	spliced_intron	4605161	4605249	-	asmbl_19810	none	STRG.21247.1,blat.proc3825158.chain_2202	2	blat.proc3825158.chain_2201	1
scaffold_14	retained_intron	1715156	1715260	-	asmbl_12914	none	blat.proc3825156.chain_1644	1	STRG.16805.1,Trinity_GG_9425_c0_g1_i1,blat.proc3825156.chain_1645	3
scaffold_11	starts_in_intron	3560584	3560584	-	asmbl_6551,asmbl_6552	none	STRG.13483.2,blat.proc3825154.chain_2066	2	STRG.13483.1,blat.proc3825154.chain_2068	2
scaffold_11	alt_donor	11640396	11640397	+	asmbl_5982	none	STRG.14090.2	1	blat.proc3825170.chain_2634	1
scaffold_8	retained_intron	4350354	4350381	+	asmbl_52839	none	STRG.9918.1,Trinity_GG_22808_c0_g1_i3,Trinity_GG_22808_c0_g1_i4	3	STRG.9918.2	1
scaffold_4	spliced_intron	4121525	4121687	-	asmbl_42496	none	STRG.4329.1,blat.proc3825150.chain_593	2	STRG.4329.3,Trinity_GG_2440_c0_g1_i3,blat.proc3825150.chain_595	3
scaffold_6	alt_acceptor	8516583	8516584	-	asmbl_48562	none	STRG.7724.1,blat.proc3825152.chain_61	2	STRG.7724.2	1
scaffold_13	alt_acceptor	3734630	3734631	+	asmbl_10730,asmbl_10731	none	Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,blat.proc3825172.chain_445,blat.proc3825172.chain_446	4	STRG.15695.1,STRG.15695.2,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_448	5
scaffold_9	alternate_exon	10847163	10847376	-	asmbl_55260	none	STRG.11394.1,blat.proc3825152.chain_3531	2	STRG.11394.2	1
scaffold_20	ends_in_intron	11744125	11744125	-	asmbl_26192	none	STRG.23685.2,Trinity_GG_13193_c0_g1_i2,blat.proc3825160.chain_781	3	STRG.23685.1,blat.proc3825160.chain_780,blat.proc3825160.chain_782	3
scaffold_9	ends_in_intron	3382438	3382438	-	asmbl_54899	none	Trinity_GG_6072_c0_g1_i3,blat.proc3825152.chain_3197	2	STRG.10947.2,Trinity_GG_6072_c0_g1_i2	2
scaffold_5	alt_donor	8539883	8539884	-	asmbl_44212,asmbl_44217	none	STRG.6198.3,STRG.6198.4,blat.proc3825150.chain_2421	3	STRG.6198.1,STRG.6198.5,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419	4
scaffold_23	alt_donor	2220327	2220328	-	asmbl_30714,asmbl_30716	none	STRG.25698.1,STRG.25698.3	2	STRG.25698.2,STRG.25698.5,STRG.25698.6	3
scaffold_10	retained_exon	975308	975362	-	asmbl_4018,asmbl_4020,asmbl_4022,asmbl_4023	none	STRG.11979.1,Trinity_GG_6637_c0_g1_i5,Trinity_GG_6637_c0_g1_i6,Trinity_GG_6637_c0_g1_i7,Trinity_GG_6637_c0_g1_i9,blat.proc3825154.chain_471	6	STRG.11979.2,Trinity_GG_6637_c0_g1_i3	2
scaffold_25	retained_intron	9292426	9292453	+	asmbl_33805	none	Trinity_GG_32639_c1_g1_i1,blat.proc3825178.chain_871	2	STRG.27744.1	1
scaffold_2	starts_in_intron	17489364	17489364	-	asmbl_23733	none	Trinity_GG_1449_c0_g1_i3,blat.proc3825148.chain_2593	2	STRG.2639.1,blat.proc3825148.chain_2592	2
scaffold_14	starts_in_intron	3591216	3591216	+	asmbl_11958	none	Trinity_GG_26643_c0_g1_i4,blat.proc3825172.chain_1733	2	STRG.16945.1,STRG.16945.2,Trinity_GG_26643_c0_g1_i1,Trinity_GG_26643_c0_g1_i3,blat.proc3825172.chain_1731	5
scaffold_4	starts_in_intron	9995980	9995980	+	asmbl_41637,asmbl_41640	none	STRG.4766.4,Trinity_GG_19950_c0_g1_i1,blat.proc3825166.chain_1186,blat.proc3825166.chain_1187	4	STRG.4766.1,STRG.4766.2,blat.proc3825166.chain_1185,blat.proc3825166.chain_1188	4
scaffold_27	starts_in_intron	3961074	3961074	+	asmbl_36238	none	blat.proc3825178.chain_2030	1	STRG.28862.1,blat.proc3825178.chain_2029	2
scaffold_27	alt_acceptor	627259	627260	-	asmbl_36702	none	STRG.28583.1,blat.proc3825162.chain_1827	2	STRG.28583.2,STRG.28583.4,Trinity_GG_15996_c0_g1_i1,blat.proc3825162.chain_1824,blat.proc3825162.chain_1828	5
scaffold_14	retained_intron	10479149	10479292	+	asmbl_12321,asmbl_12325	none	STRG.17398.2,STRG.17398.3,blat.proc3825172.chain_2141	3	blat.proc3825172.chain_2144	1
scaffold_22	alt_donor	5818158	5818159	-	asmbl_29287	none	STRG.24930.2	1	STRG.24930.1	1
scaffold_22	alt_acceptor	10896682	10896683	-	asmbl_29629,asmbl_29630	none	STRG.25430.2,STRG.25430.3,blat.proc3825160.chain_2594	3	STRG.25430.1,blat.proc3825160.chain_2595	2
scaffold_5	alt_donor	16521210	16521211	-	asmbl_44749,asmbl_44750	none	STRG.6842.1,STRG.6842.2,blat.proc3825150.chain_3015,blat.proc3825150.chain_3017	4	STRG.6842.4	1
scaffold_2	alt_acceptor	5440710	5440711	+	asmbl_24423	none	STRG.1953.3	1	STRG.1953.2,blat.proc3825164.chain_2074	2
scaffold_25	retained_exon	4334269	4334343	-	asmbl_34181	none	STRG.27361.2,blat.proc3825162.chain_722	2	STRG.27361.1,blat.proc3825162.chain_721	2
scaffold_19	spliced_intron	1038554	1038594	+	asmbl_21229	none	STRG.21896.2	1	Trinity_GG_29383_c0_g1_i1,blat.proc3825174.chain_2868	2
scaffold_11	spliced_intron	857013	857158	+	asmbl_5307,asmbl_5309,asmbl_5310	none	STRG.13285.1,STRG.13285.2,blat.proc3825170.chain_1860,blat.proc3825170.chain_1861,blat.proc3825170.chain_1863	5	blat.proc3825170.chain_1862	1
scaffold_5	starts_in_intron	15418413	15418413	-	asmbl_44669	none	Trinity_GG_3756_c0_g1_i1,blat.proc3825150.chain_2879	2	STRG.6728.1,STRG.6728.3,blat.proc3825150.chain_2880	3
scaffold_6	alternate_exon	13918579	13918810	-	asmbl_48959	none	STRG.8139.3	1	STRG.8139.1,STRG.8139.2,STRG.8139.4,blat.proc3825152.chain_568,blat.proc3825152.chain_569,blat.proc3825152.chain_570	6
scaffold_20	starts_in_intron	10114786	10114786	-	asmbl_26082	none	blat.proc3825160.chain_645	1	STRG.23563.1,STRG.23563.2,STRG.23563.3,blat.proc3825160.chain_647,blat.proc3825160.chain_648	5
scaffold_20	alt_donor	11380307	11380308	+	asmbl_27039	none	STRG.23648.4	1	STRG.23648.1,STRG.23648.2,STRG.23648.3,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i1,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_757,blat.proc3825176.chain_759	9
scaffold_24	retained_exon	4280562	4281195	+	asmbl_32177	none	STRG.26586.1,blat.proc3825176.chain_3529	2	STRG.26586.3	1
scaffold_27	alternate_exon	2997566	2997749	+	asmbl_36156	none	STRG.28786.5	1	STRG.28786.1,STRG.28786.2,STRG.28786.3,blat.proc3825178.chain_1904,blat.proc3825178.chain_1905,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	7
scaffold_2	retained_intron	6763081	6764405	+	asmbl_24491,asmbl_24494,asmbl_24496,asmbl_24498	none	Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i8,Trinity_GG_18452_c0_g1_i9,blat.proc3825164.chain_2146,blat.proc3825164.chain_2147,blat.proc3825164.chain_2150,blat.proc3825164.chain_2152	8	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i2,Trinity_GG_18452_c0_g1_i3,blat.proc3825164.chain_2148,blat.proc3825164.chain_2149,blat.proc3825164.chain_2151	7
scaffold_16	alternate_exon	4064783	4064929	-	asmbl_17045	none	STRG.19223.1,blat.proc3825158.chain_352	2	STRG.19223.2	1
scaffold_2	spliced_intron	7240923	7241276	+	asmbl_24552,asmbl_24554,asmbl_24555,asmbl_24556,asmbl_24557	none	STRG.2055.1,blat.proc3825164.chain_2169,blat.proc3825164.chain_2170,blat.proc3825164.chain_2171,blat.proc3825164.chain_2172,blat.proc3825164.chain_2173	6	blat.proc3825164.chain_2167	1
scaffold_22	spliced_intron	3782822	3783053	-	asmbl_29183	none	blat.proc3825160.chain_1992	1	blat.proc3825160.chain_1993	1
scaffold_9	alternate_exon	1650902	1650972	-	asmbl_54822	none	STRG.10852.2,blat.proc3825152.chain_3094	2	STRG.10852.1,blat.proc3825152.chain_3093	2
scaffold_22	alt_donor	484303	484304	+	asmbl_29854	none	STRG.24694.1,Trinity_GG_30924_c0_g1_i3,blat.proc3825176.chain_1751	3	blat.proc3825176.chain_1752	1
scaffold_19	retained_intron	12242887	12242971	+	asmbl_21768	none	Trinity_GG_29749_c0_g1_i3,blat.proc3825174.chain_3500	2	STRG.22556.1,blat.proc3825174.chain_3499,blat.proc3825174.chain_3501	3
scaffold_9	spliced_intron	6284420	6284513	+	asmbl_54084	none	STRG.11167.1,blat.proc3825168.chain_3713	2	blat.proc3825168.chain_3712	1
scaffold_8	skipped_exon	16504097	16507019	-	asmbl_52415	none	blat.proc3825152.chain_2932	1	STRG.10629.1,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	8
scaffold_16	alt_donor	14627049	14627050	+	asmbl_16694	none	Trinity_GG_28182_c0_g1_i1,blat.proc3825174.chain_736	2	STRG.19857.1,STRG.19857.2,Trinity_GG_28182_c0_g1_i2,blat.proc3825174.chain_735	4
scaffold_27	retained_intron	4186686	4186765	+	asmbl_36260	none	blat.proc3825178.chain_2031	1	STRG.28877.1,blat.proc3825178.chain_2032	2
scaffold_11	spliced_intron	14587104	14588383	+	asmbl_6095	none	STRG.14259.1,blat.proc3825170.chain_2703	2	STRG.14259.3,blat.proc3825170.chain_2701	2
scaffold_15	skipped_exon	15320751	15323082	+	asmbl_15748	none	STRG.18917.1	1	STRG.18917.2,Trinity_GG_27684_c0_g1_i1,blat.proc3825172.chain_3557	3
scaffold_15	alt_donor	1504631	1504632	-	asmbl_13959	none	blat.proc3825156.chain_2769	1	STRG.17963.1,STRG.17963.2,blat.proc3825156.chain_2765,blat.proc3825156.chain_2766	4
scaffold_14	starts_in_intron	6592369	6592369	+	asmbl_12086	none	STRG.17108.3	1	STRG.17108.1,STRG.17108.2,blat.proc3825172.chain_1776,blat.proc3825172.chain_1777,blat.proc3825172.chain_1780	5
scaffold_14	spliced_intron	2940933	2941376	-	asmbl_12994,asmbl_12995	none	STRG.16899.1,blat.proc3825156.chain_1740,blat.proc3825156.chain_1741	3	STRG.16899.2,Trinity_GG_9476_c0_g1_i1,blat.proc3825156.chain_1739	3
scaffold_20	alternate_exon	10696690	10696822	+	asmbl_26985	none	STRG.23601.3,blat.proc3825176.chain_791	2	STRG.23601.1,STRG.23601.2,blat.proc3825176.chain_792	3
scaffold_6	alternate_exon	8933800	8937210	+	asmbl_47182	none	STRG.7773.3	1	STRG.7773.4,Trinity_GG_21571_c2_g1_i1,blat.proc3825168.chain_205	3
scaffold_19	spliced_intron	13155142	13155525	-	asmbl_22608	none	blat.proc3825158.chain_3473	1	STRG.22639.2,STRG.22639.3,blat.proc3825158.chain_3470,blat.proc3825158.chain_3471	4
scaffold_20	starts_in_intron	7877726	7877726	+	asmbl_26733	none	STRG.23337.2,blat.proc3825176.chain_487	2	STRG.23337.1,blat.proc3825176.chain_486	2
scaffold_15	retained_intron	2718469	2718646	-	asmbl_14034	none	STRG.18060.2,Trinity_GG_10124_c0_g1_i1,blat.proc3825156.chain_2830	3	STRG.18060.1,blat.proc3825156.chain_2831	2
scaffold_3	starts_in_intron	6244833	6244833	-	asmbl_38941	none	blat.proc3825148.chain_3142	1	STRG.3271.1,STRG.3271.2,STRG.3271.4,STRG.3271.5,STRG.3271.6,blat.proc3825148.chain_3136,blat.proc3825148.chain_3138,blat.proc3825148.chain_3139,blat.proc3825148.chain_3140,blat.proc3825148.chain_3141,blat.proc3825148.chain_3143	11
scaffold_16	alt_acceptor	768067	768068	-	asmbl_16905	none	STRG.19054.2	1	STRG.19054.1	1
scaffold_10	spliced_intron	976769	976863	-	asmbl_4019,asmbl_4020	none	STRG.11979.1,STRG.11979.2,Trinity_GG_6637_c0_g1_i3,Trinity_GG_6637_c0_g1_i5	4	Trinity_GG_6637_c0_g1_i9	1
scaffold_24	retained_intron	7167433	7167861	+	asmbl_32373,asmbl_32374	none	STRG.26766.1,Trinity_GG_32118_c0_g1_i2,Trinity_GG_32118_c0_g1_i4,blat.proc3825176.chain_3741,blat.proc3825176.chain_3742,blat.proc3825176.chain_3743,blat.proc3825176.chain_3744	7	STRG.26766.2	1
scaffold_70	retained_intron	11417	11841	+	asmbl_51592	none	blat.proc3825178.chain_3231	1	STRG.30112.1,blat.proc3825178.chain_3230,blat.proc3825178.chain_3232	3
scaffold_9	retained_intron	10063361	10063447	+	asmbl_54275,asmbl_54276	none	STRG.11367.2,Trinity_GG_23622_c0_g1_i1,Trinity_GG_23622_c0_g1_i3,blat.proc3825170.chain_105,blat.proc3825170.chain_107	5	STRG.11367.1,Trinity_GG_23622_c0_g1_i2,blat.proc3825170.chain_106	3
scaffold_9	spliced_intron	9688546	9688647	-	asmbl_55234,asmbl_55235	none	STRG.11346.1,STRG.11346.2,blat.proc3825152.chain_3613,blat.proc3825152.chain_3614	4	blat.proc3825152.chain_3615,blat.proc3825152.chain_3616	2
scaffold_23	starts_in_intron	1514641	1514641	-	asmbl_30656	none	blat.proc3825160.chain_2807	1	STRG.25633.1,blat.proc3825160.chain_2808,blat.proc3825160.chain_2809	3
scaffold_13	ends_in_intron	6430825	6430825	+	asmbl_10936	none	STRG.15942.2,blat.proc3825172.chain_673	2	STRG.15942.1	1
scaffold_21	ends_in_intron	3768753	3768753	-	asmbl_27535,asmbl_27536	none	STRG.23970.2,Trinity_GG_13359_c0_g1_i4,blat.proc3825160.chain_1094	3	STRG.23970.1	1
scaffold_1	retained_intron	6297508	6297670	-	asmbl_350	none	blat.proc3825148.chain_328	1	STRG.427.1,STRG.427.2,STRG.427.3,blat.proc3825148.chain_325,blat.proc3825148.chain_327,blat.proc3825148.chain_330,blat.proc3825148.chain_331	7
scaffold_10	starts_in_intron	770899	770899	+	asmbl_2868,asmbl_2873,asmbl_2874,asmbl_2875,asmbl_2876	none	Trinity_GG_23932_c1_g1_i1,blat.proc3825170.chain_655,blat.proc3825170.chain_656,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	6	STRG.11971.1,STRG.11971.6,blat.proc3825170.chain_654	3
scaffold_3	alternate_exon	11522067	11522155	+	asmbl_40356	none	STRG.3583.2,blat.proc3825166.chain_99	2	STRG.3583.1,blat.proc3825166.chain_100	2
scaffold_15	alt_donor	397329	397330	+	asmbl_14975	none	STRG.17897.2	1	STRG.17897.1,blat.proc3825172.chain_2638	2
scaffold_5	alt_donor	10183670	10183671	-	asmbl_44319	none	STRG.6318.1	1	blat.proc3825150.chain_2510	1
scaffold_14	alternate_exon	3379942	3380141	+	asmbl_11938	none	STRG.16922.1,blat.proc3825172.chain_1680	2	STRG.16922.2	1
scaffold_9	retained_intron	15394570	15395108	+	asmbl_54567	none	STRG.11741.2,Trinity_GG_23876_c0_g1_i8,blat.proc3825170.chain_556	3	STRG.11741.1,STRG.11741.3,Trinity_GG_23876_c0_g1_i2,Trinity_GG_23876_c0_g1_i5,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i7,blat.proc3825170.chain_552,blat.proc3825170.chain_553,blat.proc3825170.chain_555,blat.proc3825170.chain_557	10
scaffold_14	starts_in_intron	15258478	15258478	+	asmbl_12585	none	Trinity_GG_27070_c1_g1_i2,blat.proc3825172.chain_2475	2	STRG.17757.2,STRG.17757.3,blat.proc3825172.chain_2476	3
scaffold_21	alt_acceptor	10098213	10098214	+	asmbl_28858	none	STRG.24472.2	1	STRG.24472.1	1
scaffold_26	skipped_exon	9829475	9830981	+	asmbl_35275	none	blat.proc3825178.chain_1550	1	STRG.28521.1,blat.proc3825178.chain_1551	2
scaffold_17	alt_acceptor	9034620	9034621	-	asmbl_18140,asmbl_18144	none	STRG.20532.3,STRG.20532.4	2	STRG.20532.1,STRG.20532.5,STRG.20532.6	3
scaffold_25	alt_acceptor	3820485	3820486	-	asmbl_34157,asmbl_34159	none	STRG.27339.1,Trinity_GG_15320_c0_g1_i2,Trinity_GG_15320_c0_g1_i3,blat.proc3825162.chain_699,blat.proc3825162.chain_701	5	STRG.27339.2	1
scaffold_16	starts_in_intron	290519	290519	+	asmbl_16015	none	STRG.19019.3	1	STRG.19019.1,STRG.19019.2,blat.proc3825172.chain_3688,blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	5
scaffold_2	alt_acceptor	888192	888193	+	asmbl_24128	none	STRG.1565.1,Trinity_GG_18210_c0_g1_i1,blat.proc3825164.chain_1711	3	STRG.1565.2,STRG.1565.3,STRG.1565.5	3
scaffold_8	spliced_intron	9586999	9587093	+	asmbl_53085,asmbl_53087,asmbl_53088	none	STRG.10216.3,blat.proc3825168.chain_2772,blat.proc3825168.chain_2775,blat.proc3825168.chain_2776	4	blat.proc3825168.chain_2773	1
scaffold_13	alternate_exon	8215688	8216117	-	asmbl_9954	none	STRG.16114.2,Trinity_GG_9055_c1_g1_i1,blat.proc3825156.chain_1019,blat.proc3825156.chain_1020	4	STRG.16114.1	1
scaffold_26	starts_in_intron	5893721	5893721	-	asmbl_35642	none	blat.proc3825162.chain_1470	1	STRG.28301.1,STRG.28301.2,STRG.28301.3,blat.proc3825162.chain_1469,blat.proc3825162.chain_1472,blat.proc3825162.chain_1473	6
scaffold_23	retained_intron	6854401	6855600	-	asmbl_30984	none	STRG.26018.1	1	STRG.26018.2,STRG.26018.3	2
scaffold_11	alt_donor	8790436	8790437	-	asmbl_6876	none	STRG.13904.2	1	STRG.13904.1	1
scaffold_14	retained_intron	150868	151276	-	asmbl_12777	none	STRG.16711.4,blat.proc3825156.chain_1519	2	STRG.16711.2,STRG.16711.3,STRG.16711.5,STRG.16711.6,blat.proc3825156.chain_1518,blat.proc3825156.chain_1520,blat.proc3825156.chain_1521	7
scaffold_1555	skipped_exon	101	1310	-	asmbl_15975	none	STRG.30628.1	1	STRG.30628.2	1
scaffold_6	starts_in_intron	3054520	3054520	+	asmbl_46806	none	blat.proc3825166.chain_3521	1	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4
scaffold_22	spliced_intron	4416451	4416579	-	asmbl_29263	none	STRG.24869.1,blat.proc3825160.chain_2021	2	blat.proc3825160.chain_2020	1
scaffold_1	retained_intron	22324113	22324192	-	asmbl_1236	none	Trinity_GG_799_c0_g1_i1,blat.proc3825148.chain_1456	2	STRG.1484.1,Trinity_GG_799_c0_g1_i2,blat.proc3825148.chain_1455	3
scaffold_14	alternate_exon	7584445	7584514	-	asmbl_13229	none	STRG.17210.1	1	STRG.17210.2	1
scaffold_11	starts_in_intron	9724780	9724780	+	asmbl_5895	none	Trinity_GG_25005_c0_g1_i4,blat.proc3825170.chain_2508	2	STRG.13987.1,STRG.13987.2,Trinity_GG_25005_c0_g1_i1,blat.proc3825170.chain_2506,blat.proc3825170.chain_2507	5
scaffold_22	alt_acceptor	9124157	9124158	-	asmbl_29515	none	STRG.25245.1	1	STRG.25245.2,STRG.25245.3	2
scaffold_23	alt_acceptor	7001863	7001864	-	asmbl_31005	none	STRG.26025.2,Trinity_GG_14562_c0_g1_i2,blat.proc3825160.chain_3183	3	STRG.26025.1,STRG.26025.3,STRG.26025.4,blat.proc3825160.chain_3182	4
scaffold_14	retained_intron	14545904	14546225	-	asmbl_13691	none	STRG.17722.1,Trinity_GG_9966_c1_g1_i1,blat.proc3825156.chain_2561	3	Trinity_GG_9966_c2_g1_i1,blat.proc3825156.chain_2562	2
scaffold_5	alt_acceptor	11993128	11993129	-	asmbl_44432	none	STRG.6453.2	1	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3
scaffold_1	alt_acceptor	8606091	8606092	-	asmbl_456	none	STRG.565.2	1	STRG.565.1,Trinity_GG_289_c0_g1_i1,blat.proc3825148.chain_525	3
scaffold_12	starts_in_intron	16727959	16727959	-	asmbl_9144	none	Trinity_GG_8621_c0_g1_i2,blat.proc3825156.chain_219	2	STRG.15418.1,STRG.15418.2,Trinity_GG_8621_c0_g1_i1,Trinity_GG_8621_c0_g1_i5,blat.proc3825156.chain_220,blat.proc3825156.chain_221	6
scaffold_21	ends_in_intron	705871	705871	-	asmbl_27355	none	STRG.23759.2,Trinity_GG_13202_c0_g2_i1,blat.proc3825160.chain_799	3	Trinity_GG_13202_c0_g1_i4,blat.proc3825160.chain_797	2
scaffold_26	alt_acceptor	3561624	3561625	+	asmbl_34793	none	STRG.28036.3	1	STRG.28036.1,STRG.28036.2,STRG.28036.4	3
scaffold_18	ends_in_intron	6240169	6240169	-	asmbl_19890	none	Trinity_GG_11970_c2_g1_i3,blat.proc3825158.chain_2306	2	STRG.21355.2	1
scaffold_20	retained_intron	11744401	11744588	-	asmbl_26192	none	STRG.23685.2,Trinity_GG_13193_c0_g1_i2,blat.proc3825160.chain_781	3	STRG.23685.1,blat.proc3825160.chain_780	2
scaffold_4	alt_donor	19028625	19028626	-	asmbl_43398	none	STRG.5484.2,blat.proc3825150.chain_1670	2	STRG.5484.1,blat.proc3825150.chain_1669	2
scaffold_2	ends_in_intron	1820985	1820985	-	asmbl_22873	none	Trinity_GG_884_c0_g1_i1,blat.proc3825148.chain_1588	2	STRG.1639.1	1
scaffold_9	alternate_exon	15539494	15539600	+	asmbl_54576	none	blat.proc3825170.chain_561	1	STRG.11744.1	1
scaffold_19	alt_donor	858189	858190	+	asmbl_21218	none	STRG.21878.2,blat.proc3825174.chain_2853	2	blat.proc3825174.chain_2854	1
scaffold_1	alt_donor	921972	921973	+	asmbl_1439,asmbl_1440	none	STRG.49.1,STRG.49.2,Trinity_GG_17320_c0_g1_i4,Trinity_GG_17320_c0_g1_i7,blat.proc3825164.chain_84,blat.proc3825164.chain_85	6	STRG.49.3,Trinity_GG_17320_c0_g1_i6,blat.proc3825164.chain_83	3
scaffold_1	alternate_exon	2739988	2746610	-	asmbl_125	none	STRG.176.1,blat.proc3825148.chain_183	2	STRG.176.4,Trinity_GG_110_c0_g1_i6	2
scaffold_21	retained_exon	5774666	5774824	-	asmbl_27692	none	STRG.24114.2,blat.proc3825160.chain_1203	2	STRG.24114.3	1
scaffold_7	spliced_intron	18392948	18393030	-	asmbl_51467,asmbl_51477	none	STRG.9670.7,Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2017,blat.proc3825152.chain_2021	5	Trinity_GG_5439_c0_g1_i9,blat.proc3825152.chain_2019	2
scaffold_1	alternate_exon	5997451	5998931	-	asmbl_314	none	blat.proc3825148.chain_403	1	STRG.404.3,blat.proc3825148.chain_400,blat.proc3825148.chain_402	3
scaffold_26	alternate_exon	4818229	4818399	+	asmbl_34929	none	blat.proc3825178.chain_1222	1	STRG.28202.2,blat.proc3825178.chain_1221	2
scaffold_23	skipped_exon	8066122	8068406	-	asmbl_31073	none	STRG.26120.1,blat.proc3825160.chain_3286	2	STRG.26120.2,blat.proc3825160.chain_3285	2
scaffold_17	spliced_intron	1128141	1128819	+	asmbl_18593	none	STRG.19963.1,blat.proc3825174.chain_835	2	STRG.19963.2,STRG.19963.3,Trinity_GG_28239_c0_g1_i7,blat.proc3825174.chain_837	4
scaffold_8	retained_exon	11849715	11849732	+	asmbl_53278,asmbl_53284	none	STRG.10390.3,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022	3	blat.proc3825168.chain_3019,blat.proc3825168.chain_3023,blat.proc3825168.chain_3027	3
scaffold_4	retained_intron	4451696	4451771	+	asmbl_41276,asmbl_41278	none	STRG.4355.2,blat.proc3825166.chain_830	2	STRG.4355.1	1
scaffold_2	starts_in_intron	2884983	2884983	-	asmbl_22937	none	blat.proc3825148.chain_1666	1	STRG.1736.1,STRG.1736.2,STRG.1736.3,blat.proc3825148.chain_1667,blat.proc3825148.chain_1668,blat.proc3825148.chain_1669,blat.proc3825148.chain_1670,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672,blat.proc3825148.chain_1673,blat.proc3825148.chain_1674	11
scaffold_15	alt_acceptor	10766506	10766507	+	asmbl_15465	none	blat.proc3825172.chain_3213	1	blat.proc3825172.chain_3210,blat.proc3825172.chain_3212,blat.proc3825172.chain_3216	3
scaffold_13	starts_in_intron	8911777	8911777	+	asmbl_11158,asmbl_11159	none	STRG.16165.3,STRG.16165.4,blat.proc3825172.chain_957	3	STRG.16165.1,STRG.16165.2,Trinity_GG_26201_c0_g1_i6,blat.proc3825172.chain_955,blat.proc3825172.chain_959	5
scaffold_6	starts_in_intron	12638617	12638617	+	asmbl_47426	none	Trinity_GG_21679_c0_g1_i2,blat.proc3825168.chain_425	2	STRG.8022.2,Trinity_GG_21679_c0_g1_i3,blat.proc3825168.chain_423,blat.proc3825168.chain_424	4
scaffold_2	alternate_exon	20127723	20127811	-	asmbl_23882	none	STRG.2840.1	1	blat.proc3825164.chain_3026	1
scaffold_9	alt_acceptor	5399983	5399984	+	asmbl_54038	none	STRG.11117.1	1	STRG.11117.2,blat.proc3825168.chain_3627	2
scaffold_17	alt_acceptor	13083983	13083984	+	asmbl_19313	none	blat.proc3825174.chain_1722	1	STRG.20804.1,blat.proc3825174.chain_1718,blat.proc3825174.chain_1721,blat.proc3825174.chain_1725,blat.proc3825174.chain_1726,blat.proc3825174.chain_1727	6
scaffold_5	retained_intron	15766781	15766917	+	asmbl_46016,asmbl_46017	none	blat.proc3825166.chain_2915,blat.proc3825166.chain_2916	2	STRG.6771.1,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2920,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	7
scaffold_18	ends_in_intron	2831546	2831546	+	asmbl_20429,asmbl_20430	none	blat.proc3825174.chain_2047,blat.proc3825174.chain_2055	2	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2052,blat.proc3825174.chain_2056	5
scaffold_1	retained_intron	14182552	14182705	+	asmbl_2336	none	blat.proc3825164.chain_1173	1	STRG.1002.1,blat.proc3825164.chain_1174,blat.proc3825164.chain_1175	3
scaffold_2258	skipped_exon	158	811	-	asmbl_30559	none	STRG.30733.1	1	STRG.30733.2	1
scaffold_26	alternate_exon	9040818	9040880	-	asmbl_35760	none	STRG.28469.2	1	STRG.28469.1,blat.proc3825162.chain_1676	2
scaffold_9	retained_intron	13319452	13319594	-	asmbl_55438	none	STRG.11634.2,blat.proc3825154.chain_17	2	STRG.11634.3,blat.proc3825154.chain_18	2
scaffold_13	retained_intron	534534	534705	-	asmbl_9359	none	Trinity_GG_8674_c0_g1_i3,blat.proc3825156.chain_325	2	STRG.15447.1,STRG.15447.2,STRG.15447.3,Trinity_GG_8674_c0_g1_i1,Trinity_GG_8674_c0_g1_i2,Trinity_GG_8674_c0_g1_i6,blat.proc3825156.chain_326,blat.proc3825156.chain_327,blat.proc3825156.chain_328	9
scaffold_14	alternate_exon	409088	410084	-	asmbl_12830	none	Trinity_GG_9366_c0_g1_i2,blat.proc3825156.chain_1555	2	STRG.16735.1	1
scaffold_6	alt_donor	5937933	5937934	-	asmbl_48439	none	STRG.7548.1	1	STRG.7548.2	1
scaffold_21	starts_in_intron	7812671	7812671	-	asmbl_27852	none	STRG.24317.1,blat.proc3825160.chain_1429	2	blat.proc3825160.chain_1426	1
scaffold_1	alt_acceptor	6496620	6496621	-	asmbl_363	none	STRG.449.2	1	STRG.449.1,blat.proc3825148.chain_351	2
scaffold_13	starts_in_intron	5516001	5516001	+	asmbl_10861	none	blat.proc3825172.chain_575	1	STRG.15848.1,blat.proc3825172.chain_576	2
scaffold_19	starts_in_intron	678381	678381	+	asmbl_21200	none	Trinity_GG_29401_c0_g1_i2,blat.proc3825174.chain_2899	2	STRG.21850.1,blat.proc3825174.chain_2900	2
scaffold_25	alt_acceptor	337594	337595	+	asmbl_33324	none	STRG.27077.3	1	STRG.27077.2	1
scaffold_19	alt_acceptor	7501375	7501376	+	asmbl_21460	none	STRG.22226.1,blat.proc3825174.chain_3217	2	STRG.22226.2	1
scaffold_6	retained_intron	13944744	13944958	+	asmbl_47550,asmbl_47551	none	STRG.8147.1,STRG.8147.2,Trinity_GG_21800_c1_g1_i1,blat.proc3825168.chain_657	4	STRG.8147.3	1
scaffold_18	alt_acceptor	647076	647077	+	asmbl_20314,asmbl_20315,asmbl_20316	none	STRG.21005.1,Trinity_GG_28827_c0_g1_i2,Trinity_GG_28827_c0_g1_i5,Trinity_GG_28827_c0_g1_i6,blat.proc3825174.chain_1855,blat.proc3825174.chain_1856,blat.proc3825174.chain_1858	7	STRG.21005.2	1
scaffold_23	retained_exon	7662287	7662625	+	asmbl_31706	none	blat.proc3825176.chain_2988	1	blat.proc3825176.chain_2990	1
scaffold_20	retained_intron	10384550	10384667	+	asmbl_26958	none	blat.proc3825176.chain_672	1	STRG.23583.4,blat.proc3825176.chain_668	2
scaffold_28	alt_donor	833082	833083	-	asmbl_37945	none	STRG.29296.2	1	STRG.29296.1,blat.proc3825162.chain_2380	2
scaffold_19	retained_exon	10222384	10222450	+	asmbl_21628	none	STRG.22402.2,blat.proc3825174.chain_3297	2	STRG.22402.1,blat.proc3825174.chain_3299	2
scaffold_21	alternate_exon	8129600	8129917	-	asmbl_27893	none	blat.proc3825160.chain_1510	1	STRG.24349.5,blat.proc3825160.chain_1508,blat.proc3825160.chain_1509,blat.proc3825160.chain_1512	4
scaffold_25	alt_acceptor	434699	434700	+	asmbl_33333	none	Trinity_GG_32275_c0_g1_i2,blat.proc3825178.chain_281	2	STRG.27088.1,blat.proc3825178.chain_280	2
scaffold_4	retained_exon	19679973	19680110	+	asmbl_42156,asmbl_42157	none	STRG.5559.1,STRG.5559.2,Trinity_GG_20342_c0_g1_i3,blat.proc3825166.chain_1807	4	STRG.5559.3,Trinity_GG_20342_c0_g1_i2,blat.proc3825166.chain_1806	3
scaffold_12	retained_exon	1056071	1056406	+	asmbl_7457	none	STRG.14447.2	1	STRG.14447.1,STRG.14447.4,blat.proc3825170.chain_2948	3
scaffold_18	spliced_intron	7662113	7662196	+	asmbl_20764,asmbl_20765,asmbl_20767,asmbl_20769	none	STRG.21471.1,STRG.21471.4,STRG.21471.6,Trinity_GG_29183_c0_g1_i11	4	STRG.21471.2,STRG.21471.5,Trinity_GG_29183_c0_g1_i7	3
scaffold_21	retained_intron	3112080	3112167	-	asmbl_27507	none	blat.proc3825160.chain_1061	1	STRG.23940.1,blat.proc3825160.chain_1062,blat.proc3825160.chain_1063,blat.proc3825160.chain_1064	4
scaffold_13	alt_acceptor	381828	381829	-	asmbl_9322	none	STRG.15437.4,blat.proc3825156.chain_262	2	STRG.15437.1,STRG.15437.3,blat.proc3825156.chain_263	3
scaffold_3	starts_in_intron	3268965	3268965	-	asmbl_38760	none	STRG.3073.2,blat.proc3825148.chain_2953	2	STRG.3073.1,STRG.3073.3,blat.proc3825148.chain_2950,blat.proc3825148.chain_2954	4
scaffold_1	ends_in_intron	7272145	7272145	-	asmbl_418	none	Trinity_GG_281_c0_g1_i5,blat.proc3825148.chain_505	2	blat.proc3825148.chain_507	1
scaffold_19	spliced_intron	12819130	12819507	-	asmbl_22548,asmbl_22549,asmbl_22553,asmbl_22554	none	STRG.22609.1,Trinity_GG_12585_c0_g1_i7,blat.proc3825158.chain_3409,blat.proc3825158.chain_3410,blat.proc3825158.chain_3414	5	STRG.22609.2,Trinity_GG_12585_c0_g1_i15,blat.proc3825158.chain_3408,blat.proc3825158.chain_3411,blat.proc3825158.chain_3413,blat.proc3825158.chain_3415	6
scaffold_3	retained_intron	14587006	14587312	-	asmbl_39404	none	STRG.3803.2,blat.proc3825148.chain_3683	2	STRG.3803.1,Trinity_GG_2081_c0_g1_i2,blat.proc3825148.chain_3681	3
scaffold_19	starts_in_intron	6374138	6374138	-	asmbl_22204,asmbl_22205	none	STRG.22156.2,blat.proc3825158.chain_2982	2	STRG.22156.1,blat.proc3825158.chain_2981	2
scaffold_8	ends_in_intron	12050694	12050694	-	asmbl_52181	none	Trinity_GG_5769_c0_g1_i2,blat.proc3825152.chain_2612	2	STRG.10398.1,blat.proc3825152.chain_2611	2
scaffold_26	spliced_intron	9316247	9316445	+	asmbl_35214,asmbl_35215,asmbl_35217,asmbl_35218,asmbl_35222,asmbl_35224	none	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1612,blat.proc3825178.chain_1614,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	7	blat.proc3825178.chain_1611,blat.proc3825178.chain_1615	2
scaffold_13	retained_intron	6761797	6761991	+	asmbl_10969,asmbl_10972	none	STRG.15967.2,Trinity_GG_26054_c0_g1_i2,blat.proc3825172.chain_650,blat.proc3825172.chain_651	4	STRG.15967.1,blat.proc3825172.chain_649	2
scaffold_24	alt_acceptor	3656568	3656569	+	asmbl_32150	none	STRG.26550.3,Trinity_GG_31970_c0_g1_i5,blat.proc3825176.chain_3470	3	STRG.26550.1,STRG.26550.2,STRG.26550.5,STRG.26550.6,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463,blat.proc3825176.chain_3465,blat.proc3825176.chain_3466,blat.proc3825176.chain_3467,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469	11
scaffold_643	alt_acceptor	1606	1607	-	asmbl_49488	none	STRG.30415.3	1	STRG.30415.1	1
scaffold_21	starts_in_intron	394310	394310	-	asmbl_27307	none	Trinity_GG_13226_c0_g1_i2,blat.proc3825160.chain_852	2	STRG.23733.1,STRG.23733.2,Trinity_GG_13226_c0_g1_i1,Trinity_GG_13226_c0_g1_i4,Trinity_GG_13226_c0_g1_i6,blat.proc3825160.chain_849,blat.proc3825160.chain_851,blat.proc3825160.chain_853	8
scaffold_28	alternate_exon	4240533	4241892	+	asmbl_37529	none	STRG.29613.2	1	STRG.29613.1	1
scaffold_15	starts_in_intron	15179203	15179203	+	asmbl_15730,asmbl_15742	none	blat.proc3825172.chain_3523,blat.proc3825172.chain_3532	2	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3519,blat.proc3825172.chain_3520,blat.proc3825172.chain_3521,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3525,blat.proc3825172.chain_3528,blat.proc3825172.chain_3529,blat.proc3825172.chain_3530,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535,blat.proc3825172.chain_3536	16
scaffold_22	alt_acceptor	2963790	2963791	-	asmbl_29158	none	STRG.24785.1,blat.proc3825160.chain_1971	2	STRG.24785.2	1
scaffold_13	retained_intron	3092016	3092119	-	asmbl_9515	none	STRG.15615.1	1	STRG.15615.2	1
scaffold_7	alt_donor	6043338	6043339	-	asmbl_50912	none	STRG.8910.4,blat.proc3825152.chain_1342	2	STRG.8910.2,STRG.8910.3,STRG.8910.5,Trinity_GG_5061_c0_g1_i9,blat.proc3825152.chain_1341,blat.proc3825152.chain_1343,blat.proc3825152.chain_1344,blat.proc3825152.chain_1349	8
scaffold_8	ends_in_intron	4185834	4185834	+	asmbl_52818	none	blat.proc3825168.chain_2470	1	STRG.9897.1,blat.proc3825168.chain_2471,blat.proc3825168.chain_2472,blat.proc3825168.chain_2473	4
scaffold_7	retained_exon	1236137	1236502	+	asmbl_49605	none	STRG.8637.6	1	STRG.8637.4,STRG.8637.7,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	5
scaffold_13	alt_donor	4508841	4508842	+	asmbl_10805	none	STRG.15778.1,blat.proc3825172.chain_502	2	STRG.15778.2,blat.proc3825172.chain_503	2
scaffold_5	spliced_intron	10197865	10198044	-	asmbl_44326	none	STRG.6323.3	1	STRG.6323.1,STRG.6323.2,blat.proc3825150.chain_2527,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2533	7
scaffold_27	retained_exon	2814732	2814833	+	asmbl_36117	none	STRG.28763.2,Trinity_GG_33230_c1_g1_i2,blat.proc3825178.chain_1927	3	STRG.28763.1,STRG.28763.3,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1925	6
scaffold_300	retained_intron	2945	3159	+	asmbl_40906	none	blat.proc3825178.chain_3366	1	STRG.30272.1,STRG.30272.2,STRG.30272.3,blat.proc3825178.chain_3363,blat.proc3825178.chain_3364,blat.proc3825178.chain_3365	6
scaffold_14	alternate_exon	14106449	14106847	-	asmbl_13679	none	STRG.17678.3	1	STRG.17678.1	1
scaffold_15	spliced_intron	6080096	6080203	-	asmbl_14239	none	STRG.18271.1,blat.proc3825156.chain_3121	2	blat.proc3825156.chain_3120	1
scaffold_6	alternate_exon	9131158	9134832	+	asmbl_47213,asmbl_47219,asmbl_47220,asmbl_47221,asmbl_47222	none	STRG.7790.1,STRG.7790.2,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_219	5	STRG.7790.5	1
scaffold_15	retained_intron	2564009	2564591	+	asmbl_15068	none	STRG.18045.4	1	STRG.18045.3,Trinity_GG_27217_c0_g1_i9	2
scaffold_25	alt_acceptor	3084202	3084203	-	asmbl_34091	none	STRG.27251.1	1	STRG.27251.2,STRG.27251.3,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555	5
scaffold_10	alt_donor	11970189	11970190	+	asmbl_3518	none	STRG.12838.5	1	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.6	4
scaffold_2	alternate_exon	10910031	10912009	-	asmbl_23440	none	STRG.2247.1,blat.proc3825148.chain_2289	2	STRG.2247.2,blat.proc3825148.chain_2290	2
scaffold_3	starts_in_intron	10946666	10946666	-	asmbl_39126	none	blat.proc3825148.chain_3420	1	STRG.3547.1,blat.proc3825148.chain_3417,blat.proc3825148.chain_3419	3
scaffold_10	alternate_exon	6018576	6018719	-	asmbl_4419	none	blat.proc3825154.chain_1007	1	blat.proc3825154.chain_1005	1
scaffold_10	retained_intron	11908965	11909113	+	asmbl_3502,asmbl_3503,asmbl_3505	none	STRG.12828.2,Trinity_GG_24345_c0_g1_i3,Trinity_GG_24345_c0_g1_i4,blat.proc3825170.chain_1353,blat.proc3825170.chain_1354	5	STRG.12828.1,Trinity_GG_24345_c0_g1_i2,blat.proc3825170.chain_1352,blat.proc3825170.chain_1355	4
scaffold_1	spliced_intron	6576083	6576214	-	asmbl_372,asmbl_374	none	STRG.450.2,blat.proc3825148.chain_425,blat.proc3825148.chain_426	3	STRG.450.1,blat.proc3825148.chain_427	2
scaffold_1	alternate_exon	12169056	12173944	+	asmbl_2184,asmbl_2187	none	blat.proc3825164.chain_1006,blat.proc3825164.chain_1008,blat.proc3825164.chain_1009,blat.proc3825164.chain_1010	4	STRG.837.1	1
scaffold_6	retained_intron	15761296	15762180	-	asmbl_49081	none	STRG.8318.3,Trinity_GG_4745_c1_g1_i2,blat.proc3825152.chain_761	3	STRG.8318.1,STRG.8318.2,blat.proc3825152.chain_757,blat.proc3825152.chain_758,blat.proc3825152.chain_759	5
scaffold_2	alternate_exon	946440	946477	+	asmbl_24162,asmbl_24163,asmbl_24167	none	STRG.1574.1,STRG.1574.2,STRG.1574.3	3	STRG.1574.4	1
scaffold_3	spliced_intron	13179330	13179422	+	asmbl_40433,asmbl_40434,asmbl_40436,asmbl_40437	none	STRG.3682.1,blat.proc3825166.chain_163,blat.proc3825166.chain_165,blat.proc3825166.chain_166	4	Trinity_GG_19370_c0_g2_i1,blat.proc3825166.chain_167	2
scaffold_7	ends_in_intron	4076387	4076387	-	asmbl_50854	none	blat.proc3825152.chain_1189	1	STRG.8807.1,blat.proc3825152.chain_1191	2
scaffold_14	alt_donor	5598455	5598456	+	asmbl_12030,asmbl_12031,asmbl_12032	none	STRG.17042.1,STRG.17042.2,blat.proc3825172.chain_1824,blat.proc3825172.chain_1830	4	blat.proc3825172.chain_1828	1
scaffold_24	alt_donor	6297543	6297544	+	asmbl_32300	none	STRG.26687.1,Trinity_GG_32069_c0_g1_i1,blat.proc3825176.chain_3641	3	STRG.26687.2,Trinity_GG_32069_c0_g1_i2,blat.proc3825176.chain_3643	3
scaffold_16	retained_intron	430142	430213	-	asmbl_16875,asmbl_16876,asmbl_16878	none	blat.proc3825158.chain_201,blat.proc3825158.chain_203,blat.proc3825158.chain_205	3	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_196,blat.proc3825158.chain_197,blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_200,blat.proc3825158.chain_202,blat.proc3825158.chain_204	9
scaffold_4	retained_intron	5651885	5652054	-	asmbl_42619,asmbl_42623,asmbl_42624,asmbl_42628	none	STRG.4472.3,blat.proc3825150.chain_658,blat.proc3825150.chain_659,blat.proc3825150.chain_663,blat.proc3825150.chain_664	5	Trinity_GG_2475_c0_g1_i10,blat.proc3825150.chain_657,blat.proc3825150.chain_661	3
scaffold_11	retained_intron	5525403	5525484	+	asmbl_5567	none	blat.proc3825170.chain_2162	1	STRG.13624.1,blat.proc3825170.chain_2163	2
scaffold_5	alt_donor	5064055	5064056	-	asmbl_44027	none	STRG.5964.2,Trinity_GG_3315_c0_g1_i1,blat.proc3825150.chain_2089	3	STRG.5964.1,Trinity_GG_3315_c0_g1_i4,blat.proc3825150.chain_2090	3
scaffold_4	ends_in_intron	12791693	12791693	+	asmbl_41755	none	blat.proc3825166.chain_1367	1	STRG.4935.1,STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365,blat.proc3825166.chain_1369	5
scaffold_7	retained_intron	11851482	11851796	+	asmbl_50192	none	STRG.9305.2,Trinity_GG_22470_c0_g1_i1,blat.proc3825168.chain_1814	3	STRG.9305.3,blat.proc3825168.chain_1811	2
scaffold_25	alt_acceptor	3585914	3585915	+	asmbl_33431	none	STRG.27302.1,blat.proc3825178.chain_403	2	STRG.27302.2	1
scaffold_7	retained_exon	15569134	15569204	-	asmbl_51385	none	blat.proc3825152.chain_1852	1	STRG.9555.1,blat.proc3825152.chain_1851	2
scaffold_4	retained_intron	4112991	4113116	-	asmbl_42484,asmbl_42485	none	blat.proc3825150.chain_478,blat.proc3825150.chain_481	2	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_482	4
scaffold_6	ends_in_intron	7171808	7171808	+	asmbl_47050,asmbl_47054	none	STRG.7628.3,blat.proc3825168.chain_81	2	STRG.7628.1,STRG.7628.2,STRG.7628.4	3
scaffold_8	alt_donor	10041090	10041091	-	asmbl_52093	none	STRG.10261.2,blat.proc3825152.chain_2484	2	STRG.10261.3,blat.proc3825152.chain_2485	2
scaffold_13	skipped_exon	5736319	5737303	-	asmbl_9718	none	STRG.15882.1,blat.proc3825156.chain_763	2	blat.proc3825156.chain_762	1
scaffold_17	skipped_exon	9004638	9006457	+	asmbl_19056,asmbl_19058	none	STRG.20525.3,blat.proc3825174.chain_1322	2	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4
scaffold_13	alt_acceptor	6426970	6426971	+	asmbl_10936	none	STRG.15942.2	1	STRG.15942.1	1
scaffold_12	alt_acceptor	15677546	15677547	-	asmbl_9095	none	STRG.15358.2	1	STRG.15358.1,STRG.15358.3,STRG.15358.4,blat.proc3825156.chain_212,blat.proc3825156.chain_213	5
scaffold_2	retained_intron	17234631	17234740	-	asmbl_23717	none	STRG.2621.1,Trinity_GG_1439_c1_g1_i1,blat.proc3825148.chain_2578	3	STRG.2621.2	1
scaffold_1	retained_intron	5743594	5743804	+	asmbl_1783	none	STRG.374.2,Trinity_GG_17562_c0_g1_i1,blat.proc3825164.chain_511	3	STRG.374.1,Trinity_GG_17562_c0_g1_i2,blat.proc3825164.chain_512	3
scaffold_5	retained_intron	10529716	10530671	+	asmbl_45678,asmbl_45679	none	STRG.6341.1,Trinity_GG_20761_c0_g1_i1,Trinity_GG_20761_c0_g1_i2,blat.proc3825166.chain_2538,blat.proc3825166.chain_2539	5	STRG.6341.2	1
scaffold_5	retained_intron	10382183	10382274	-	asmbl_44353,asmbl_44356	none	blat.proc3825150.chain_2516,blat.proc3825150.chain_2518	2	STRG.6339.1,STRG.6339.2	2
scaffold_14	alt_acceptor	15116257	15116258	+	asmbl_12562	none	Trinity_GG_27062_c0_g1_i4,blat.proc3825172.chain_2453	2	blat.proc3825172.chain_2454	1
scaffold_15	skipped_exon	15450190	15450391	+	asmbl_15788	none	Trinity_GG_27706_c0_g1_i6,blat.proc3825172.chain_3625	2	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i3,blat.proc3825172.chain_3619,blat.proc3825172.chain_3621,blat.proc3825172.chain_3624	7
scaffold_1	retained_intron	13130586	13130726	-	asmbl_798	none	blat.proc3825148.chain_913	1	STRG.955.1,blat.proc3825148.chain_914,blat.proc3825148.chain_915	3
scaffold_1	ends_in_intron	6955897	6955897	+	asmbl_1863	none	blat.proc3825164.chain_628	1	STRG.494.1,blat.proc3825164.chain_627	2
scaffold_10	alternate_exon	16531477	16532185	+	asmbl_3720	none	blat.proc3825170.chain_1652	1	STRG.13128.2,blat.proc3825170.chain_1654	2
scaffold_18	ends_in_intron	371702	371702	-	asmbl_19578	none	Trinity_GG_11786_c4_g1_i1,blat.proc3825158.chain_1995	2	STRG.20990.1,blat.proc3825158.chain_1985,blat.proc3825158.chain_1986,blat.proc3825158.chain_1989,blat.proc3825158.chain_1990	5
scaffold_27	starts_in_intron	3058845	3058845	+	asmbl_36179	none	blat.proc3825178.chain_1820	1	STRG.28792.1,STRG.28792.2,blat.proc3825178.chain_1821,blat.proc3825178.chain_1823	4
scaffold_12	spliced_intron	4204687	4204911	+	asmbl_7587	none	STRG.14600.2,Trinity_GG_25384_c0_g1_i1,blat.proc3825170.chain_3173	3	STRG.14600.1,Trinity_GG_25384_c0_g1_i2,blat.proc3825170.chain_3172	3
scaffold_9	ends_in_intron	17782636	17782636	-	asmbl_55678	none	blat.proc3825154.chain_352	1	STRG.11858.1	1
scaffold_17	alternate_exon	1289779	1292490	-	asmbl_17683	none	blat.proc3825158.chain_972	1	STRG.19964.3	1
scaffold_6	ends_in_intron	7305263	7305263	+	asmbl_47067	none	blat.proc3825168.chain_64	1	STRG.7639.1	1
scaffold_16	retained_intron	433622	434014	-	asmbl_16869,asmbl_16873	none	blat.proc3825158.chain_198,blat.proc3825158.chain_199	2	STRG.19041.1,blat.proc3825158.chain_196,blat.proc3825158.chain_203	3
scaffold_3	alt_acceptor	11980542	11980543	+	asmbl_40383,asmbl_40384	none	STRG.3620.1,STRG.3620.2,Trinity_GG_19308_c0_g1_i1,Trinity_GG_19308_c0_g1_i2,Trinity_GG_19308_c0_g2_i1,blat.proc3825166.chain_49,blat.proc3825166.chain_50,blat.proc3825166.chain_51	8	STRG.3620.3	1
scaffold_26	alternate_exon	1321803	1324625	-	asmbl_35400	none	STRG.27913.2	1	STRG.27913.4	1
scaffold_2	alt_donor	19373630	19373631	-	asmbl_23866	none	STRG.2806.2,blat.proc3825148.chain_2745	2	STRG.2806.1,blat.proc3825148.chain_2746	2
scaffold_16	starts_in_intron	5947052	5947052	+	asmbl_16238	none	STRG.19329.2,Trinity_GG_27858_c0_g1_i2,blat.proc3825174.chain_164	3	STRG.19329.1,blat.proc3825174.chain_166	2
scaffold_5	retained_exon	2166760	2166924	-	asmbl_43875	none	STRG.5754.3	1	STRG.5754.1,blat.proc3825150.chain_1989	2
scaffold_27	alternate_exon	1971563	1972274	-	asmbl_36796	none	STRG.28678.1,blat.proc3825162.chain_1936	2	STRG.28678.3	1
scaffold_22	starts_in_intron	10944311	10944311	-	asmbl_29633	none	blat.proc3825160.chain_2598	1	blat.proc3825160.chain_2597,blat.proc3825160.chain_2600	2
scaffold_21	retained_exon	5774120	5774824	-	asmbl_27692	none	STRG.24114.2,blat.proc3825160.chain_1203	2	STRG.24114.1,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200	4
scaffold_17	retained_exon	8600002	8600091	+	asmbl_19000	none	STRG.20471.1,blat.proc3825174.chain_1332	2	STRG.20471.2	1
scaffold_18	retained_intron	11472870	11472947	+	asmbl_20944	none	STRG.21681.2,Trinity_GG_29284_c0_g1_i2,blat.proc3825174.chain_2703	3	STRG.21681.1,blat.proc3825174.chain_2702	2
scaffold_6	alt_acceptor	15112355	15112356	+	asmbl_47656	none	STRG.8277.3	1	STRG.8277.1,STRG.8277.2,blat.proc3825168.chain_760	3
scaffold_1	alternate_exon	8753713	8754389	-	asmbl_489	none	STRG.579.1,blat.proc3825148.chain_599	2	STRG.579.3,blat.proc3825148.chain_597	2
scaffold_7	starts_in_intron	12412436	12412436	+	asmbl_50259	none	Trinity_GG_22499_c0_g1_i1,blat.proc3825168.chain_1869	2	STRG.9345.1,Trinity_GG_22499_c0_g1_i2,blat.proc3825168.chain_1868	3
scaffold_12	ends_in_intron	1066535	1066535	-	asmbl_8289	none	Trinity_GG_8066_c0_g1_i2,blat.proc3825154.chain_2967	2	STRG.14451.1,STRG.14451.2,blat.proc3825154.chain_2966,blat.proc3825154.chain_2968	4
scaffold_24	alternate_exon	9121140	9121546	+	asmbl_32516	none	STRG.26939.1,Trinity_GG_32182_c0_g1_i4,blat.proc3825178.chain_95	3	blat.proc3825178.chain_96	1
scaffold_27	alt_donor	159056	159057	-	asmbl_36650	none	STRG.28549.1,blat.proc3825162.chain_1774	2	STRG.28549.2,STRG.28549.3	2
scaffold_17	retained_intron	8158916	8159004	+	asmbl_18939	none	blat.proc3825174.chain_1263	1	STRG.20433.1,STRG.20433.2,blat.proc3825174.chain_1265	3
scaffold_14	retained_intron	11388081	11388304	-	asmbl_13479,asmbl_13481	none	STRG.17477.4,blat.proc3825156.chain_2291	2	STRG.17477.1,STRG.17477.2,STRG.17477.3,blat.proc3825156.chain_2292,blat.proc3825156.chain_2295	5
scaffold_5	alt_donor	10534510	10534511	-	asmbl_44362	none	STRG.6342.3	1	STRG.6342.2,blat.proc3825150.chain_2542	2
scaffold_6	alternate_exon	2844734	2847274	-	asmbl_48169,asmbl_48171	none	STRG.7282.2,STRG.7282.3,blat.proc3825150.chain_3368	3	blat.proc3825150.chain_3370	1
scaffold_5	retained_intron	6010030	6010122	+	asmbl_45391	none	STRG.6018.2	1	STRG.6018.1,Trinity_GG_20607_c0_g1_i2,blat.proc3825166.chain_2248	3
scaffold_14	spliced_intron	3161864	3162176	+	asmbl_11917	none	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2	Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	7
scaffold_4	alternate_exon	5191195	5191231	-	asmbl_42562	none	STRG.4410.1,blat.proc3825150.chain_643	2	STRG.4410.3,STRG.4410.4,blat.proc3825150.chain_644	3
scaffold_6	alternate_exon	6922132	6922224	-	asmbl_48471,asmbl_48473	none	STRG.7597.1,blat.proc3825152.chain_5	2	STRG.7597.2,STRG.7597.3,blat.proc3825152.chain_6	3
scaffold_24	alt_donor	3391878	3391879	-	asmbl_32824	none	STRG.26536.1	1	STRG.26536.2	1
scaffold_8	spliced_intron	18248240	18248543	-	asmbl_52525,asmbl_52526,asmbl_52527	none	STRG.10728.2,STRG.10728.3,blat.proc3825152.chain_3011,blat.proc3825152.chain_3016,blat.proc3825152.chain_3018,blat.proc3825152.chain_3019	6	blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3015,blat.proc3825152.chain_3017	4
scaffold_7	alt_acceptor	13554821	13554822	-	asmbl_51311,asmbl_51313	none	STRG.9465.1,blat.proc3825152.chain_1802,blat.proc3825152.chain_1804	3	blat.proc3825152.chain_1803	1
scaffold_23	starts_in_intron	10938371	10938371	-	asmbl_31176	none	Trinity_GG_14694_c0_g1_i3	1	STRG.26299.1,STRG.26299.2	2
scaffold_8	spliced_intron	18089675	18090313	+	asmbl_53524	none	STRG.10711.2,blat.proc3825168.chain_3140	2	STRG.10711.1,blat.proc3825168.chain_3139	2
scaffold_24	alt_donor	2513660	2513661	+	asmbl_32101,asmbl_32102,asmbl_32103	none	STRG.26469.2,STRG.26469.3,STRG.26469.4,blat.proc3825176.chain_3420,blat.proc3825176.chain_3421,blat.proc3825176.chain_3422	6	STRG.26469.1	1
scaffold_1	retained_intron	849802	849972	+	asmbl_1420,asmbl_1421	none	STRG.42.5,Trinity_GG_17343_c0_g1_i1,Trinity_GG_17343_c0_g1_i4,blat.proc3825164.chain_126,blat.proc3825164.chain_128	5	STRG.42.2,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_127	3
scaffold_15	spliced_intron	15857347	15857984	+	asmbl_15820	none	STRG.18973.3,Trinity_GG_27688_c0_g1_i12,blat.proc3825172.chain_3569	3	Trinity_GG_27688_c0_g1_i10,blat.proc3825172.chain_3573,blat.proc3825172.chain_3578	3
scaffold_5	starts_in_intron	6564689	6564689	+	asmbl_45434,asmbl_45439	none	STRG.6054.2,Trinity_GG_20591_c0_g2_i1,blat.proc3825166.chain_2219	3	STRG.6054.1,blat.proc3825166.chain_2217	2
scaffold_16	retained_exon	7228891	7228941	-	asmbl_17173,asmbl_17177	none	STRG.19399.2,STRG.19399.3	2	STRG.19399.1	1
scaffold_13	spliced_intron	7719414	7719504	-	asmbl_9903,asmbl_9904	none	STRG.16058.1,STRG.16058.2,Trinity_GG_8995_c0_g1_i3,blat.proc3825156.chain_886	4	blat.proc3825156.chain_885	1
scaffold_3	alternate_exon	8252347	8253369	+	asmbl_40207	none	STRG.3402.2	1	Trinity_GG_19231_c0_g1_i1,blat.proc3825164.chain_3650	2
scaffold_18	starts_in_intron	11211127	11211127	+	asmbl_20937	none	Trinity_GG_29282_c0_g1_i3	1	STRG.21672.1,blat.proc3825174.chain_2698	2
scaffold_17	retained_exon	1289779	1289821	-	asmbl_17685	none	STRG.19964.2	1	STRG.19964.3	1
scaffold_3	alt_acceptor	935722	935723	-	asmbl_38684	none	blat.proc3825148.chain_2837	1	STRG.2916.1	1
scaffold_12	spliced_intron	3400110	3400288	+	asmbl_7560	none	blat.proc3825170.chain_3114	1	blat.proc3825170.chain_3115	1
scaffold_9	alt_donor	6274001	6274002	+	asmbl_54079	none	STRG.11169.1,blat.proc3825168.chain_3669	2	blat.proc3825168.chain_3668	1
scaffold_21	alt_acceptor	1171939	1171940	-	asmbl_27385	none	STRG.23798.2	1	STRG.23798.1,blat.proc3825160.chain_936	2
scaffold_2074	alt_donor	935	936	-	asmbl_27253	none	STRG.30702.1,Trinity_GG_17228_c0_g1_i2,blat.proc3825162.chain_3725	3	STRG.30702.2,Trinity_GG_17228_c0_g1_i1,blat.proc3825162.chain_3724	3
scaffold_16	retained_intron	744436	744656	-	asmbl_16900,asmbl_16901	none	blat.proc3825158.chain_187,blat.proc3825158.chain_188	2	STRG.19055.1,blat.proc3825158.chain_184,blat.proc3825158.chain_185	3
scaffold_23	starts_in_intron	2028253	2028253	-	asmbl_30686	none	blat.proc3825160.chain_2838	1	STRG.25675.1,blat.proc3825160.chain_2837,blat.proc3825160.chain_2839	3
scaffold_22	retained_intron	594271	594371	+	asmbl_29868	none	Trinity_GG_30938_c0_g1_i3,blat.proc3825176.chain_1773	2	STRG.24712.1,Trinity_GG_30938_c0_g1_i1,Trinity_GG_30938_c0_g1_i4,blat.proc3825176.chain_1771,blat.proc3825176.chain_1772	5
scaffold_14	skipped_exon	14147599	14148817	+	asmbl_12525	none	STRG.17687.1	1	STRG.17687.2,STRG.17687.3,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	4
scaffold_8	alt_acceptor	8651671	8651672	+	asmbl_53023	none	STRG.10131.1	1	STRG.10131.2	1
scaffold_3	starts_in_intron	16444283	16444283	+	asmbl_40621	none	Trinity_GG_19509_c0_g1_i2,blat.proc3825166.chain_405	2	STRG.3922.1,STRG.3922.2,STRG.3922.3,blat.proc3825166.chain_403	4
scaffold_13	alt_donor	4342947	4342948	+	asmbl_10782	none	STRG.15762.1,blat.proc3825172.chain_472	2	STRG.15762.2	1
scaffold_13	spliced_intron	738856	739000	+	asmbl_10516	none	STRG.15461.3	1	STRG.15461.2,blat.proc3825172.chain_191	2
scaffold_13	alternate_exon	11379298	11380113	-	asmbl_10080	none	STRG.16301.8,Trinity_GG_9138_c0_g1_i4,blat.proc3825156.chain_1171	3	STRG.16301.7,Trinity_GG_9138_c0_g2_i1,blat.proc3825156.chain_1175	3
scaffold_21	ends_in_intron	6711283	6711283	+	asmbl_28690	none	blat.proc3825176.chain_1426	1	STRG.24196.1,Trinity_GG_30731_c0_g1_i1,blat.proc3825176.chain_1425	3
scaffold_14	retained_exon	9272349	9272558	-	asmbl_13367	none	blat.proc3825156.chain_2203,blat.proc3825156.chain_2207	2	STRG.17338.5	1
scaffold_4	starts_in_intron	6600389	6600389	+	asmbl_41418	none	STRG.4521.2	1	STRG.4521.1,blat.proc3825166.chain_971,blat.proc3825166.chain_972,blat.proc3825166.chain_973	4
scaffold_7	alt_donor	18394861	18394862	-	asmbl_51472,asmbl_51474,asmbl_51475	none	STRG.9670.5,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,blat.proc3825152.chain_2012,blat.proc3825152.chain_2015	5	STRG.9670.1,STRG.9670.2,STRG.9670.3,STRG.9670.4,STRG.9670.6,STRG.9670.7,blat.proc3825152.chain_2013,blat.proc3825152.chain_2016,blat.proc3825152.chain_2018,blat.proc3825152.chain_2020	10
scaffold_13	alternate_exon	8805849	8805932	-	asmbl_9979,asmbl_9982	none	STRG.16153.4,Trinity_GG_9086_c0_g1_i7,blat.proc3825156.chain_1069	3	blat.proc3825156.chain_1072	1
scaffold_14	starts_in_intron	15398128	15398128	-	asmbl_13724	none	blat.proc3825156.chain_2592	1	STRG.17772.1,STRG.17772.2,blat.proc3825156.chain_2590,blat.proc3825156.chain_2591	4
scaffold_2	retained_intron	6766206	6766429	+	asmbl_24492	none	Trinity_GG_18452_c0_g1_i6,blat.proc3825164.chain_2153	2	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	9
scaffold_14	ends_in_intron	3366043	3366043	-	asmbl_13006	none	Trinity_GG_9484_c0_g1_i1,blat.proc3825156.chain_1749	2	STRG.16916.1,blat.proc3825156.chain_1750	2
scaffold_18	alt_acceptor	632654	632655	+	asmbl_20313	none	STRG.21004.3	1	STRG.21004.1,blat.proc3825174.chain_1853	2
scaffold_1	alt_donor	19006360	19006361	+	asmbl_2575	none	STRG.1324.1	1	STRG.1324.2,STRG.1324.3	2
scaffold_1	alternate_exon	19006746	19007215	+	asmbl_2572	none	STRG.1324.4	1	STRG.1324.3	1
scaffold_2	spliced_intron	16860835	16861118	+	asmbl_25146,asmbl_25147	none	STRG.2602.1,STRG.2602.2,blat.proc3825164.chain_2898,blat.proc3825164.chain_2902	4	blat.proc3825164.chain_2900	1
scaffold_7	alt_donor	6624505	6624506	+	asmbl_49869	none	STRG.8935.4	1	STRG.8935.3	1
scaffold_25	alt_acceptor	1553784	1553785	-	asmbl_34041	none	STRG.27185.2	1	STRG.27185.1	1
scaffold_5	retained_intron	19444958	19445069	-	asmbl_44914	none	STRG.7047.1,Trinity_GG_3921_c0_g1_i1,blat.proc3825150.chain_3152	3	STRG.7047.2,Trinity_GG_3921_c0_g1_i2,blat.proc3825150.chain_3153	3
scaffold_6	alt_donor	6999952	6999953	+	asmbl_47037	none	STRG.7612.2,blat.proc3825168.chain_10	2	STRG.7612.1,STRG.7612.3	2
scaffold_21	retained_intron	8920825	8921417	+	asmbl_28837,asmbl_28838	none	STRG.24410.2,Trinity_GG_30826_c0_g1_i1,blat.proc3825176.chain_1591,blat.proc3825176.chain_1592	4	STRG.24410.1	1
scaffold_1	spliced_intron	1565206	1565368	+	asmbl_1491,asmbl_1492,asmbl_1494	none	STRG.101.1,STRG.101.2,blat.proc3825164.chain_211,blat.proc3825164.chain_212	4	STRG.101.3	1
scaffold_11	alternate_exon	3551581	3552817	+	asmbl_5452	none	blat.proc3825170.chain_2027	1	blat.proc3825170.chain_2028	1
scaffold_6	ends_in_intron	299825	299825	+	asmbl_46652	none	blat.proc3825166.chain_3321	1	STRG.7091.1,STRG.7091.2,STRG.7091.3,STRG.7091.4	4
scaffold_28	retained_intron	2651234	2651332	+	asmbl_37395	none	STRG.29457.1	1	STRG.29457.2,blat.proc3825178.chain_2671	2
scaffold_11	retained_exon	2099402	2099454	-	asmbl_6473,asmbl_6475	none	STRG.13379.1,blat.proc3825154.chain_1949,blat.proc3825154.chain_1950	3	STRG.13379.2,STRG.13379.3,blat.proc3825154.chain_1948	3
scaffold_5	alt_donor	911761	911762	-	asmbl_43787	none	STRG.5635.1	1	blat.proc3825150.chain_1773	1
scaffold_22	alternate_exon	11420777	11420865	+	asmbl_30383	none	STRG.25488.1,Trinity_GG_31372_c0_g1_i2,blat.proc3825176.chain_2462	3	STRG.25488.2,Trinity_GG_31372_c0_g1_i1,blat.proc3825176.chain_2463	3
scaffold_23	alt_donor	1540961	1540962	-	asmbl_30658	none	STRG.25632.3,blat.proc3825160.chain_2803	2	STRG.25632.1,STRG.25632.2,blat.proc3825160.chain_2801,blat.proc3825160.chain_2802	4
scaffold_18	alt_donor	4074018	4074019	+	asmbl_20493,asmbl_20494	none	STRG.21207.1,STRG.21207.4	2	STRG.21207.2,STRG.21207.3	2
scaffold_5	alt_acceptor	13245879	13245880	+	asmbl_45870	none	STRG.6568.3	1	STRG.6568.1,STRG.6568.2,blat.proc3825166.chain_2749,blat.proc3825166.chain_2750,blat.proc3825166.chain_2751	5
scaffold_5	starts_in_intron	3495063	3495063	+	asmbl_45218	none	blat.proc3825166.chain_2067	1	STRG.5823.1,blat.proc3825166.chain_2066	2
scaffold_1	alternate_exon	4270230	4273056	+	asmbl_1658,asmbl_1659,asmbl_1660	none	STRG.261.1,STRG.261.2,STRG.261.3,blat.proc3825164.chain_398	4	STRG.261.4	1
scaffold_3	alt_acceptor	17109945	17109946	+	asmbl_40647	none	STRG.3952.2	1	STRG.3952.1	1
scaffold_17	alt_donor	9956670	9956671	+	asmbl_19136	none	STRG.20610.2,blat.proc3825174.chain_1465	2	STRG.20610.1,blat.proc3825174.chain_1464	2
scaffold_4	alternate_exon	8621858	8621985	-	asmbl_42782	none	blat.proc3825150.chain_899	1	STRG.4680.1,blat.proc3825150.chain_900,blat.proc3825150.chain_901	3
scaffold_19	alt_acceptor	13134673	13134674	-	asmbl_22603	none	blat.proc3825158.chain_3463	1	STRG.22634.1	1
scaffold_16	alt_acceptor	4148827	4148828	+	asmbl_16177,asmbl_16180	none	STRG.19230.1,STRG.19230.3,Trinity_GG_27835_c0_g1_i1,blat.proc3825174.chain_113	4	STRG.19230.2	1
scaffold_10	ends_in_intron	8319261	8319261	-	asmbl_4575	none	Trinity_GG_7035_c1_g1_i1	1	STRG.12589.1,STRG.12589.2	2
scaffold_13	starts_in_intron	14155159	14155159	+	asmbl_11423,asmbl_11425	none	Trinity_GG_26389_c3_g1_i1,blat.proc3825172.chain_1280	2	STRG.16461.1,Trinity_GG_26389_c0_g1_i1,blat.proc3825172.chain_1273	3
scaffold_6	retained_intron	12911385	12911667	+	asmbl_47446	none	STRG.8051.1,Trinity_GG_21717_c0_g1_i1,Trinity_GG_21717_c0_g1_i2,blat.proc3825168.chain_502,blat.proc3825168.chain_503	5	STRG.8051.2,blat.proc3825168.chain_504	2
scaffold_14	spliced_intron	6427617	6427975	-	asmbl_13128	none	STRG.17091.1,blat.proc3825156.chain_1900	2	blat.proc3825156.chain_1899	1
scaffold_13	alternate_exon	1325058	1325410	+	asmbl_10558	none	STRG.15504.2,blat.proc3825172.chain_289	2	STRG.15504.1,blat.proc3825172.chain_291	2
scaffold_7	alt_donor	14730150	14730151	+	asmbl_50399	none	STRG.9506.1,Trinity_GG_22593_c0_g1_i1,blat.proc3825168.chain_2030	3	STRG.9506.2	1
scaffold_20	starts_in_intron	6975539	6975539	+	asmbl_26690	none	blat.proc3825176.chain_445	1	STRG.23262.1	1
scaffold_17	ends_in_intron	11507879	11507879	+	asmbl_19229	none	blat.proc3825174.chain_1587	1	STRG.20699.1,blat.proc3825174.chain_1585	2
scaffold_4	spliced_intron	4102190	4102272	+	asmbl_41230,asmbl_41232	none	STRG.4316.1,STRG.4316.2	2	blat.proc3825166.chain_696	1
scaffold_13	retained_exon	15363483	15363547	+	asmbl_11494	none	STRG.16579.1,Trinity_GG_26428_c0_g1_i3	2	STRG.16579.2,Trinity_GG_26428_c0_g1_i2	2
scaffold_5	alt_acceptor	17297936	17297937	+	asmbl_46159	none	STRG.6909.1,blat.proc3825166.chain_3087	2	STRG.6909.2,STRG.6909.3,blat.proc3825166.chain_3086	3
scaffold_1	starts_in_intron	1216792	1216792	-	asmbl_49,asmbl_50	none	STRG.65.2,blat.proc3825148.chain_72	2	STRG.65.1,STRG.65.3,Trinity_GG_36_c0_g2_i1,blat.proc3825148.chain_70,blat.proc3825148.chain_71	5
scaffold_5	alt_acceptor	16283073	16283074	+	asmbl_46077	none	Trinity_GG_21030_c0_g1_i3,blat.proc3825166.chain_2983	2	STRG.6827.2,Trinity_GG_21030_c0_g1_i5,Trinity_GG_21030_c0_g1_i6,blat.proc3825166.chain_2982,blat.proc3825166.chain_2984	5
scaffold_17	alt_acceptor	2553422	2553423	-	asmbl_17764	none	blat.proc3825158.chain_1014	1	STRG.20051.1,blat.proc3825158.chain_1015	2
scaffold_12	ends_in_intron	9002007	9002007	-	asmbl_8639	none	blat.proc3825154.chain_3405	1	STRG.14908.1,blat.proc3825154.chain_3404	2
scaffold_7	starts_in_intron	6634470	6634470	-	asmbl_50922	none	blat.proc3825152.chain_1378	1	STRG.8937.1,blat.proc3825152.chain_1377	2
scaffold_6	retained_intron	2481572	2481735	-	asmbl_48128,asmbl_48132	none	STRG.7245.4,STRG.7245.5,blat.proc3825150.chain_3361	3	STRG.7245.3	1
scaffold_1	retained_intron	12335190	12335281	-	asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_705	none	Trinity_GG_444_c0_g1_i30,blat.proc3825148.chain_826,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_834,blat.proc3825148.chain_836	6	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_831,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	13
scaffold_5	spliced_intron	16320680	16320777	+	asmbl_46082	none	STRG.6829.1,blat.proc3825166.chain_3010	2	blat.proc3825166.chain_3012	1
scaffold_20	starts_in_intron	7870041	7870041	-	asmbl_25939	none	blat.proc3825160.chain_405	1	STRG.23335.1,blat.proc3825160.chain_406	2
scaffold_1	alt_donor	20135348	20135349	-	asmbl_1170,asmbl_1173,asmbl_1174,asmbl_1175	none	STRG.1386.5,STRG.1386.6,STRG.1386.7,blat.proc3825148.chain_1398	4	STRG.1386.1,STRG.1386.2	2
scaffold_22	alt_donor	11641498	11641499	-	asmbl_29687,asmbl_29689	none	STRG.25513.2,STRG.25513.4,Trinity_GG_14246_c0_g1_i1,blat.proc3825160.chain_2631	4	STRG.25513.1	1
scaffold_7	alternate_exon	12261960	12262124	+	asmbl_50224	none	STRG.9322.2,Trinity_GG_22482_c0_g1_i4,blat.proc3825168.chain_1838	3	STRG.9322.1,Trinity_GG_22482_c0_g1_i3,blat.proc3825168.chain_1837	3
scaffold_19	spliced_intron	13236971	13237060	-	asmbl_22609,asmbl_22610,asmbl_22613	none	STRG.22653.1,STRG.22653.2,STRG.22653.3,blat.proc3825158.chain_3423,blat.proc3825158.chain_3425,blat.proc3825158.chain_3427	6	STRG.22653.4,blat.proc3825158.chain_3426	2
scaffold_1	starts_in_intron	14199851	14199851	+	asmbl_2341	none	Trinity_GG_17929_c2_g1_i1,blat.proc3825164.chain_1197	2	STRG.1008.1,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i4,Trinity_GG_17929_c0_g1_i5,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1189,blat.proc3825164.chain_1191,blat.proc3825164.chain_1192	9
scaffold_5	alt_acceptor	6927581	6927582	+	asmbl_45462	none	STRG.6105.2	1	STRG.6105.1,blat.proc3825166.chain_2330	2
scaffold_8	alternate_exon	3049099	3049240	+	asmbl_52741	none	STRG.9821.2,Trinity_GG_22769_c0_g1_i1	2	STRG.9821.1,blat.proc3825168.chain_2351	2
scaffold_19	alt_acceptor	11780639	11780640	+	asmbl_21721	none	blat.proc3825174.chain_3539	1	STRG.22505.1,blat.proc3825174.chain_3538	2
scaffold_10	alternate_exon	10779826	10779925	+	asmbl_3435	none	STRG.12765.3	1	STRG.12765.1,STRG.12765.2	2
scaffold_14	spliced_intron	11792025	11792322	-	asmbl_13536	none	STRG.17533.2,blat.proc3825156.chain_2355	2	STRG.17533.1,Trinity_GG_9837_c1_g1_i1,blat.proc3825156.chain_2356	3
scaffold_2	spliced_intron	956971	957115	-	asmbl_22826,asmbl_22827	none	STRG.1572.1,STRG.1572.2,blat.proc3825148.chain_1533	3	Trinity_GG_850_c0_g1_i2,blat.proc3825148.chain_1534	2
scaffold_12	starts_in_intron	16438557	16438557	+	asmbl_8186,asmbl_8187	none	Trinity_GG_25777_c0_g1_i1,blat.proc3825172.chain_119,blat.proc3825172.chain_120	3	STRG.15407.2	1
scaffold_4	starts_in_intron	3229893	3229893	-	asmbl_42418	none	blat.proc3825150.chain_457	1	STRG.4248.1,STRG.4248.2,blat.proc3825150.chain_458	3
scaffold_5	starts_in_intron	12482579	12482579	+	asmbl_45800	none	Trinity_GG_20845_c0_g1_i1,blat.proc3825166.chain_2685	2	STRG.6485.1	1
scaffold_11	alt_donor	11627320	11627321	+	asmbl_5977	none	STRG.14087.1,Trinity_GG_25077_c0_g1_i1,blat.proc3825170.chain_2628	3	STRG.14087.2	1
scaffold_9	alternate_exon	11829494	11831821	-	asmbl_55320	none	STRG.11499.1	1	blat.proc3825152.chain_3676	1
scaffold_20	alt_acceptor	2448306	2448307	+	asmbl_26493	none	STRG.22984.1,blat.proc3825176.chain_160	2	STRG.22984.2	1
scaffold_10	alt_acceptor	925771	925772	-	asmbl_4012	none	STRG.11968.2	1	STRG.11968.1,Trinity_GG_6668_c0_g1_i2,blat.proc3825154.chain_538	3
scaffold_28	spliced_intron	4267785	4268006	+	asmbl_37532	none	STRG.29620.1,Trinity_GG_33733_c0_g1_i1,blat.proc3825178.chain_2802	3	STRG.29620.2,blat.proc3825178.chain_2801	2
scaffold_23	alternate_exon	5081542	5084569	-	asmbl_30881	none	STRG.25891.2,blat.proc3825160.chain_3069	2	blat.proc3825160.chain_3067	1
scaffold_1	alt_acceptor	20135278	20135279	-	asmbl_1175	none	blat.proc3825148.chain_1398	1	STRG.1386.5,STRG.1386.7	2
scaffold_14	alternate_exon	2476905	2477732	-	asmbl_12961	none	STRG.16860.1,Trinity_GG_9445_c0_g1_i2,Trinity_GG_9457_c0_g1_i3,blat.proc3825156.chain_1678,blat.proc3825156.chain_1697	5	STRG.16860.2	1
scaffold_1	skipped_exon	6830779	6831856	-	asmbl_386	none	STRG.474.3	1	STRG.474.1,STRG.474.2,blat.proc3825148.chain_463,blat.proc3825148.chain_465	4
scaffold_28	alt_acceptor	2190089	2190090	-	asmbl_38019	none	STRG.29384.2,blat.proc3825162.chain_2559	2	STRG.29384.1	1
scaffold_3	alt_donor	8253407	8253408	+	asmbl_40206	none	STRG.3402.1,Trinity_GG_19231_c0_g1_i2,blat.proc3825164.chain_3649	3	STRG.3402.2	1
scaffold_2	starts_in_intron	861113	861113	+	asmbl_24113	none	STRG.1562.2,blat.proc3825164.chain_1700	2	STRG.1562.1	1
scaffold_9	retained_intron	6904964	6905103	-	asmbl_55096	none	Trinity_GG_6207_c0_g1_i4,blat.proc3825152.chain_3444	2	STRG.11202.1,Trinity_GG_6207_c0_g1_i1,blat.proc3825152.chain_3443	3
scaffold_7	retained_intron	1235897	1236296	+	asmbl_49602	none	STRG.8637.2	1	STRG.8637.5	1
scaffold_1	alt_acceptor	1555624	1555625	+	asmbl_1489	none	STRG.93.1	1	STRG.93.2	1
scaffold_6	retained_intron	6708324	6709026	-	asmbl_48461	none	blat.proc3825150.chain_3744	1	STRG.7584.1	1
scaffold_8	skipped_exon	9128357	9129084	-	asmbl_52008	none	STRG.10172.1	1	STRG.10172.2,STRG.10172.3,STRG.10172.4,blat.proc3825152.chain_2387,blat.proc3825152.chain_2389	5
scaffold_21	starts_in_intron	8190004	8190004	+	asmbl_28799	none	STRG.24355.2	1	STRG.24355.1	1
scaffold_10	starts_in_intron	8983075	8983075	-	asmbl_4649	none	blat.proc3825154.chain_1281	1	STRG.12651.1,blat.proc3825154.chain_1280	2
scaffold_9	alternate_exon	16574500	16574528	-	asmbl_55594	none	STRG.11808.2	1	STRG.11808.1,Trinity_GG_6517_c0_g1_i1,Trinity_GG_6517_c0_g1_i2,blat.proc3825154.chain_254,blat.proc3825154.chain_255	5
scaffold_5	alt_acceptor	11079223	11079224	+	asmbl_45728,asmbl_45729	none	STRG.6399.2,blat.proc3825166.chain_2599,blat.proc3825166.chain_2602	3	STRG.6399.1,STRG.6399.3,blat.proc3825166.chain_2600,blat.proc3825166.chain_2601	4
scaffold_15	retained_exon	12421558	12422504	+	asmbl_15558	none	STRG.18696.1,blat.proc3825172.chain_3325	2	STRG.18696.2	1
scaffold_2	retained_intron	5375992	5376203	-	asmbl_23144	none	STRG.1946.3,blat.proc3825148.chain_1904	2	blat.proc3825148.chain_1906	1
scaffold_26	spliced_intron	9083581	9083738	-	asmbl_35763,asmbl_35764	none	STRG.28473.2,STRG.28473.4,blat.proc3825162.chain_1681	3	STRG.28473.1,blat.proc3825162.chain_1682	2
scaffold_6	alt_acceptor	4125980	4125981	-	asmbl_48285,asmbl_48286	none	STRG.7388.1,STRG.7388.2	2	STRG.7388.3	1
scaffold_27	alt_donor	382156	382157	-	asmbl_36680	none	STRG.28567.4,Trinity_GG_15949_c1_g1_i4,blat.proc3825162.chain_1734,blat.proc3825162.chain_1736	4	STRG.28567.3,STRG.28567.5,blat.proc3825162.chain_1733,blat.proc3825162.chain_1735	4
scaffold_18	alt_acceptor	7631535	7631536	-	asmbl_19959,asmbl_19960,asmbl_19966	none	STRG.21463.2,STRG.21463.3,blat.proc3825158.chain_2391,blat.proc3825158.chain_2392,blat.proc3825158.chain_2393	5	STRG.21463.4,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2396	3
scaffold_6	ends_in_intron	7292156	7292156	+	asmbl_47064	none	blat.proc3825168.chain_58	1	STRG.7638.1	1
scaffold_8	ends_in_intron	17764069	17764069	+	asmbl_53499	none	Trinity_GG_23246_c0_g1_i5,blat.proc3825168.chain_3232	2	STRG.10691.1,STRG.10691.2,Trinity_GG_23246_c0_g1_i2,blat.proc3825168.chain_3233	4
scaffold_17	starts_in_intron	11348030	11348030	-	asmbl_18281	none	blat.proc3825158.chain_1717	1	blat.proc3825158.chain_1716	1
scaffold_3	retained_intron	17455934	17455991	+	asmbl_40679,asmbl_40680,asmbl_40682,asmbl_40684	none	STRG.3978.2,STRG.3978.3,STRG.3978.4,Trinity_GG_19520_c0_g1_i1,Trinity_GG_19520_c0_g1_i2,blat.proc3825166.chain_435,blat.proc3825166.chain_436	7	STRG.3978.5	1
scaffold_4	starts_in_intron	14959214	14959214	+	asmbl_41912	none	blat.proc3825166.chain_1533	1	STRG.5106.1,STRG.5106.2,blat.proc3825166.chain_1531,blat.proc3825166.chain_1532,blat.proc3825166.chain_1535	5
scaffold_26	alternate_exon	422390	422673	+	asmbl_34680,asmbl_34683	none	STRG.27868.1,blat.proc3825178.chain_942,blat.proc3825178.chain_943	3	STRG.27868.2,blat.proc3825178.chain_941	2
scaffold_3	alt_donor	16347336	16347337	-	asmbl_39496,asmbl_39497	none	STRG.3910.3	1	STRG.3910.1,blat.proc3825150.chain_114,blat.proc3825150.chain_115	3
scaffold_19	retained_exon	6408819	6408830	-	asmbl_22216	none	blat.proc3825158.chain_3003	1	STRG.22169.1,blat.proc3825158.chain_3002	2
scaffold_8	spliced_intron	12625677	12626028	-	asmbl_52212,asmbl_52213	none	STRG.10437.1,blat.proc3825152.chain_2673,blat.proc3825152.chain_2674	3	blat.proc3825152.chain_2675,blat.proc3825152.chain_2676	2
scaffold_19	ends_in_intron	2781238	2781238	+	asmbl_21279	none	Trinity_GG_29459_c0_g1_i7,blat.proc3825174.chain_3000	2	STRG.21962.1,STRG.21962.2,STRG.21962.3,STRG.21962.4,STRG.21962.5,blat.proc3825174.chain_2998	6
scaffold_15	spliced_intron	4469772	4470220	-	asmbl_14144	none	STRG.18174.1,Trinity_GG_10224_c0_g1_i2,blat.proc3825156.chain_3019	3	Trinity_GG_10224_c0_g1_i1,blat.proc3825156.chain_3020	2
scaffold_26	ends_in_intron	3672255	3672255	+	asmbl_34813	none	blat.proc3825178.chain_1109	1	STRG.28048.1,blat.proc3825178.chain_1106,blat.proc3825178.chain_1108,blat.proc3825178.chain_1110,blat.proc3825178.chain_1111,blat.proc3825178.chain_1112	6
scaffold_19	starts_in_intron	7579100	7579100	+	asmbl_21471,asmbl_21480	none	STRG.22236.2,STRG.22236.3,blat.proc3825174.chain_3233	3	STRG.22236.1	1
scaffold_22	alt_acceptor	6956327	6956328	-	asmbl_29353	none	STRG.25024.1	1	STRG.25024.2,STRG.25024.3	2
scaffold_10	spliced_intron	7276486	7276839	+	asmbl_3269,asmbl_3270,asmbl_3275	none	STRG.12540.1,STRG.12540.2,blat.proc3825170.chain_1145,blat.proc3825170.chain_1147,blat.proc3825170.chain_1150	5	STRG.12540.3,STRG.12540.4,blat.proc3825170.chain_1149	3
scaffold_23	spliced_intron	6290063	6290359	-	asmbl_30968,asmbl_30971,asmbl_30972,asmbl_30973,asmbl_30974	none	STRG.25975.1,STRG.25975.3,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192,blat.proc3825160.chain_3193	9	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190	7
scaffold_25	alt_donor	6438158	6438159	+	asmbl_33628	none	STRG.27528.2,blat.proc3825178.chain_615	2	STRG.27528.1,blat.proc3825178.chain_616	2
scaffold_13	alt_acceptor	11979303	11979304	-	asmbl_10117	none	blat.proc3825156.chain_1205	1	STRG.16331.1	1
scaffold_5	alternate_exon	10299770	10299866	-	asmbl_44337,asmbl_44340,asmbl_44342	none	STRG.6332.1,STRG.6332.2,blat.proc3825150.chain_2557,blat.proc3825150.chain_2558	4	Trinity_GG_3573_c3_g1_i1	1
scaffold_3	retained_exon	13664588	13664678	-	asmbl_39280	none	STRG.3708.1	1	STRG.3708.2	1
scaffold_1555	retained_exon	333	478	-	asmbl_15974	none	STRG.30628.2	1	STRG.30628.1	1
scaffold_6	skipped_exon	4319469	4320281	+	asmbl_46880	none	STRG.7409.2,blat.proc3825166.chain_3614	2	STRG.7409.3	1
scaffold_10	alt_donor	7110307	7110308	+	asmbl_3261	none	STRG.12531.2,blat.proc3825170.chain_1136	2	STRG.12531.1,blat.proc3825170.chain_1139	2
scaffold_25	alternate_exon	7344529	7344644	+	asmbl_33674	none	STRG.27589.4	1	STRG.27589.1,STRG.27589.2,STRG.27589.3,Trinity_GG_32527_c1_g1_i1,blat.proc3825178.chain_699	5
scaffold_8	retained_exon	12810505	12810554	-	asmbl_52234	none	STRG.10466.2,blat.proc3825152.chain_2687	2	STRG.10466.1,blat.proc3825152.chain_2685	2
scaffold_10	alternate_exon	11915395	11915471	-	asmbl_4798	none	STRG.12827.2	1	STRG.12827.1,blat.proc3825154.chain_1375	2
scaffold_11	starts_in_intron	8725752	8725752	+	asmbl_5829	none	STRG.13892.5,Trinity_GG_24977_c2_g1_i1,blat.proc3825170.chain_2464	3	STRG.13892.2	1
scaffold_5	alt_acceptor	6290163	6290164	+	asmbl_45419,asmbl_45420	none	STRG.6040.1,STRG.6040.2	2	Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	2
scaffold_6	alt_donor	11664	11665	-	asmbl_48014	none	STRG.7057.1	1	blat.proc3825150.chain_3174	1
scaffold_9	alt_acceptor	15384542	15384543	+	asmbl_54558,asmbl_54561	none	STRG.11739.1,blat.proc3825170.chain_501,blat.proc3825170.chain_503	3	STRG.11739.3	1
scaffold_23	alt_donor	10233509	10233510	+	asmbl_31845	none	STRG.26235.1,blat.proc3825176.chain_3220,blat.proc3825176.chain_3222	3	STRG.26235.2,blat.proc3825176.chain_3221	2
scaffold_21	retained_exon	257435	257452	-	asmbl_27283	none	STRG.23725.6	1	STRG.23725.2,STRG.23725.5,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_811,blat.proc3825160.chain_812,blat.proc3825160.chain_813	13
scaffold_24	alt_acceptor	10169655	10169656	+	asmbl_32545	none	STRG.26979.1,blat.proc3825178.chain_79	2	STRG.26979.2	1
scaffold_11	alt_donor	2061239	2061240	+	asmbl_5356	none	STRG.13366.1	1	STRG.13366.4,blat.proc3825170.chain_1926	2
scaffold_19	retained_intron	3560904	3561075	+	asmbl_21326,asmbl_21327	none	STRG.22045.2,Trinity_GG_29503_c0_g1_i5,Trinity_GG_29503_c2_g1_i1,blat.proc3825174.chain_3074,blat.proc3825174.chain_3075,blat.proc3825174.chain_3080	6	STRG.22045.3,STRG.22045.4	2
scaffold_8	skipped_exon	14569798	14572335	+	asmbl_53380	none	STRG.10543.1,blat.proc3825168.chain_3106	2	STRG.10543.2,STRG.10543.3	2
scaffold_9	retained_exon	15384505	15384598	+	asmbl_54563	none	STRG.11739.3	1	STRG.11739.2,STRG.11739.4,blat.proc3825170.chain_498,blat.proc3825170.chain_499,blat.proc3825170.chain_500	5
scaffold_1	alt_donor	13825398	13825399	-	asmbl_848	none	STRG.990.3,blat.proc3825148.chain_998	2	STRG.990.2,blat.proc3825148.chain_999	2
scaffold_6	skipped_exon	17645566	17647422	-	asmbl_49195	none	STRG.8458.2	1	STRG.8458.1	1
scaffold_18	alt_donor	6906405	6906406	+	asmbl_20691	none	STRG.21395.2	1	STRG.21395.1,Trinity_GG_29118_c0_g1_i2,blat.proc3825174.chain_2405	3
scaffold_6	ends_in_intron	18659947	18659947	+	asmbl_47837	none	blat.proc3825168.chain_1036	1	STRG.8548.1,blat.proc3825168.chain_1034,blat.proc3825168.chain_1035,blat.proc3825168.chain_1037	4
scaffold_20	retained_intron	1489870	1489939	+	asmbl_26417	none	STRG.22869.1	1	STRG.22869.2,STRG.22869.3,STRG.22869.4,STRG.22869.6	4
scaffold_12	retained_exon	13030878	13030948	-	asmbl_8903,asmbl_8904	none	STRG.15189.1,STRG.15189.2	2	STRG.15189.3,blat.proc3825154.chain_3688,blat.proc3825154.chain_3690	3
scaffold_12	alt_acceptor	7421173	7421174	-	asmbl_8583,asmbl_8584,asmbl_8585	none	STRG.14825.1,STRG.14825.2,STRG.14825.3,blat.proc3825154.chain_3339,blat.proc3825154.chain_3341	5	blat.proc3825154.chain_3340	1
scaffold_26	starts_in_intron	888291	888291	+	asmbl_34704	none	Trinity_GG_32682_c0_g2_i2	1	STRG.27893.2	1
scaffold_1	starts_in_intron	5185177	5185177	-	asmbl_238	none	Trinity_GG_166_c0_g1_i1,blat.proc3825148.chain_284	2	STRG.324.1,STRG.324.2,Trinity_GG_166_c0_g1_i2,Trinity_GG_166_c0_g1_i3,blat.proc3825148.chain_285,blat.proc3825148.chain_286	6
scaffold_20	spliced_intron	4262257	4262277	-	asmbl_25732	none	STRG.23110.2	1	STRG.23110.1	1
scaffold_1	alt_acceptor	11177129	11177130	+	asmbl_2078,asmbl_2079,asmbl_2080,asmbl_2081,asmbl_2082,asmbl_2084,asmbl_2088	none	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_906,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915	10	blat.proc3825164.chain_908	1
scaffold_7	alt_donor	18338056	18338057	+	asmbl_50519	none	STRG.9661.1,blat.proc3825168.chain_2177	2	STRG.9661.2,blat.proc3825168.chain_2178	2
scaffold_12	alternate_exon	10526969	10527046	-	asmbl_8758	none	STRG.15018.1,Trinity_GG_8388_c0_g1_i2,blat.proc3825154.chain_3541	3	STRG.15018.2,blat.proc3825154.chain_3540	2
scaffold_22	retained_intron	3782822	3783053	-	asmbl_29184	none	blat.proc3825160.chain_1993	1	blat.proc3825160.chain_1992	1
scaffold_19	retained_intron	5197616	5197930	+	asmbl_21362	none	STRG.22091.2,blat.proc3825174.chain_3057	2	STRG.22091.1,blat.proc3825174.chain_3058	2
scaffold_8	retained_exon	16385816	16385960	+	asmbl_53448,asmbl_53449,asmbl_53450	none	STRG.10620.1,STRG.10620.2,Trinity_GG_23226_c0_g1_i2,Trinity_GG_23226_c0_g1_i3,Trinity_GG_23226_c0_g1_i4,blat.proc3825168.chain_3195,blat.proc3825168.chain_3196,blat.proc3825168.chain_3197	8	STRG.10620.3	1
scaffold_5	alternate_exon	18263892	18265467	+	asmbl_46239	none	blat.proc3825166.chain_3187	1	STRG.6968.4	1
scaffold_1	retained_intron	13537305	13537508	-	asmbl_825	none	blat.proc3825148.chain_932	1	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_931,blat.proc3825148.chain_933	6
scaffold_3	alt_acceptor	8211785	8211786	-	asmbl_39025	none	STRG.3399.1	1	STRG.3399.2,blat.proc3825148.chain_3243	2
scaffold_20	alternate_exon	4180770	4180902	+	asmbl_26561	none	STRG.23107.1,blat.proc3825176.chain_269	2	STRG.23107.2,Trinity_GG_30051_c0_g1_i1	2
scaffold_18	alt_acceptor	1648349	1648350	-	asmbl_19630	none	STRG.21046.2,blat.proc3825158.chain_1912	2	STRG.21046.1,blat.proc3825158.chain_1913	2
scaffold_25	alt_acceptor	9047055	9047056	-	asmbl_34475	none	STRG.27715.2,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106	3	STRG.27715.1	1
scaffold_23	retained_intron	811002	811092	-	asmbl_30607	none	Trinity_GG_14309_c0_g1_i5,blat.proc3825160.chain_2755	2	Trinity_GG_14309_c0_g1_i7,blat.proc3825160.chain_2756	2
scaffold_27	ends_in_intron	1959058	1959058	+	asmbl_36055	none	blat.proc3825178.chain_1773	1	STRG.28677.1,STRG.28677.2,blat.proc3825178.chain_1771,blat.proc3825178.chain_1772,blat.proc3825178.chain_1775	5
scaffold_18	retained_exon	10187820	10187828	-	asmbl_20100	none	blat.proc3825158.chain_2524	1	STRG.21618.3	1
scaffold_7	alt_acceptor	4933373	4933374	+	asmbl_49772,asmbl_49773,asmbl_49774,asmbl_49775,asmbl_49776,asmbl_49778,asmbl_49779	none	STRG.8852.1,STRG.8852.2,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1351,blat.proc3825168.chain_1352	9	STRG.8852.3	1
scaffold_23	starts_in_intron	5345347	5345347	+	asmbl_31568	none	Trinity_GG_31620_c0_g1_i2,blat.proc3825176.chain_2875	2	STRG.25922.1,Trinity_GG_31620_c0_g1_i1,blat.proc3825176.chain_2874	3
scaffold_19	alt_acceptor	8840	8841	+	asmbl_21166	none	STRG.21816.1	1	STRG.21816.3	1
scaffold_13	starts_in_intron	13231844	13231844	+	asmbl_11373	none	blat.proc3825172.chain_1199	1	STRG.16396.1,blat.proc3825172.chain_1200	2
scaffold_7	spliced_intron	11144044	11145072	+	asmbl_50151,asmbl_50152,asmbl_50154	none	STRG.9262.1,blat.proc3825168.chain_1787,blat.proc3825168.chain_1788,blat.proc3825168.chain_1789,blat.proc3825168.chain_1791	5	STRG.9262.2,blat.proc3825168.chain_1784,blat.proc3825168.chain_1785	3
scaffold_24	spliced_intron	7786686	7786927	-	asmbl_33062	none	blat.proc3825162.chain_212	1	blat.proc3825162.chain_213	1
scaffold_15	alternate_exon	15443363	15443729	+	asmbl_15793	none	STRG.18935.1,blat.proc3825172.chain_3624	2	Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3619,blat.proc3825172.chain_3626	4
scaffold_27	ends_in_intron	6983031	6983031	-	asmbl_37086	none	Trinity_GG_16298_c1_g1_i1,blat.proc3825162.chain_2288	2	STRG.29066.1	1
scaffold_6	alt_acceptor	12500043	12500044	+	asmbl_47417	none	blat.proc3825168.chain_494	1	STRG.8009.1,blat.proc3825168.chain_495	2
scaffold_14	ends_in_intron	15584415	15584415	+	asmbl_12635	none	STRG.17811.4	1	STRG.17811.1,STRG.17811.2,STRG.17811.3,STRG.17811.7,blat.proc3825172.chain_2554,blat.proc3825172.chain_2556	6
scaffold_16	retained_intron	4655336	4655551	+	asmbl_16195	none	Trinity_GG_27846_c1_g1_i1,blat.proc3825174.chain_140	2	STRG.19251.1,STRG.19251.2,blat.proc3825174.chain_136,blat.proc3825174.chain_138	4
scaffold_19	alt_acceptor	13162244	13162245	+	asmbl_21861	none	blat.proc3825174.chain_3673	1	STRG.22640.1,STRG.22640.2,blat.proc3825174.chain_3672	3
scaffold_18	alt_acceptor	7868871	7868872	+	asmbl_20803,asmbl_20805,asmbl_20807	none	STRG.21488.7,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2457	4	STRG.21488.1,STRG.21488.2,STRG.21488.3,STRG.21488.4,STRG.21488.5,STRG.21488.6,blat.proc3825174.chain_2452,blat.proc3825174.chain_2454,blat.proc3825174.chain_2456,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	11
scaffold_14	spliced_intron	12824418	12824716	-	asmbl_13613,asmbl_13619	none	STRG.17598.5,Trinity_GG_9905_c0_g1_i1,blat.proc3825156.chain_2462	3	blat.proc3825156.chain_2461	1
scaffold_3	alternate_exon	11979984	11980140	+	asmbl_40386	none	Trinity_GG_19308_c0_g1_i3,blat.proc3825166.chain_48	2	STRG.3620.1,STRG.3620.2,Trinity_GG_19308_c0_g1_i1,Trinity_GG_19308_c0_g1_i2,blat.proc3825166.chain_49,blat.proc3825166.chain_50	6
scaffold_3	ends_in_intron	10302499	10302499	+	asmbl_40266	none	blat.proc3825164.chain_3701	1	STRG.3476.1,STRG.3476.2,Trinity_GG_19250_c1_g1_i1,Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700,blat.proc3825164.chain_3702	6
scaffold_12	alt_donor	135054	135055	+	asmbl_7435,asmbl_7436	none	blat.proc3825170.chain_2984,blat.proc3825170.chain_2985	2	STRG.14431.2,STRG.14431.3	2
scaffold_1	retained_intron	12794976	12795080	-	asmbl_768	none	blat.proc3825148.chain_861	1	STRG.903.1,blat.proc3825148.chain_860	2
scaffold_2	retained_intron	14193694	14193809	-	asmbl_23566,asmbl_23567,asmbl_23571	none	STRG.2416.1,STRG.2416.2,blat.proc3825148.chain_2415	3	blat.proc3825148.chain_2413,blat.proc3825148.chain_2414	2
scaffold_14	alt_acceptor	7966009	7966010	-	asmbl_13233	none	STRG.17212.2,Trinity_GG_9661_c1_g1_i2,blat.proc3825156.chain_2038	3	STRG.17212.1,Trinity_GG_9661_c1_g1_i1,blat.proc3825156.chain_2039	3
scaffold_8	alt_donor	9656080	9656081	+	asmbl_53092,asmbl_53093,asmbl_53098	none	STRG.10219.1,STRG.10219.3,blat.proc3825168.chain_2810	3	STRG.10219.2,STRG.10219.5,blat.proc3825168.chain_2808,blat.proc3825168.chain_2809	4
scaffold_3	starts_in_intron	6077494	6077494	-	asmbl_38900	none	blat.proc3825148.chain_3127	1	STRG.3258.2,STRG.3258.3,blat.proc3825148.chain_3126,blat.proc3825148.chain_3128	4
scaffold_14	ends_in_intron	12760575	12760575	-	asmbl_13600,asmbl_13601	none	STRG.17591.4,STRG.17591.5	2	STRG.17591.1	1
scaffold_25	retained_intron	1437723	1437825	+	asmbl_33373	none	Trinity_GG_32303_c0_g1_i1,blat.proc3825178.chain_321	2	Trinity_GG_32303_c0_g1_i2,blat.proc3825178.chain_322	2
scaffold_1	alternate_exon	3614090	3614568	-	asmbl_166	none	STRG.228.2,blat.proc3825148.chain_228	2	STRG.228.3,blat.proc3825148.chain_226	2
scaffold_1	ends_in_intron	14182153	14182153	+	asmbl_2338	none	STRG.1002.2	1	STRG.1002.1,blat.proc3825164.chain_1173,blat.proc3825164.chain_1174,blat.proc3825164.chain_1175	4
scaffold_16	spliced_intron	8294415	8294498	+	asmbl_16387	none	STRG.19465.2,blat.proc3825174.chain_385	2	STRG.19465.1,blat.proc3825174.chain_384	2
scaffold_2	starts_in_intron	14643641	14643641	+	asmbl_24967	none	STRG.2460.3	1	STRG.2460.1,STRG.2460.2	2
scaffold_6	spliced_intron	10393410	10393501	+	asmbl_47282	none	STRG.7883.1,blat.proc3825168.chain_331	2	blat.proc3825168.chain_330	1
scaffold_12	alternate_exon	2662438	2663777	+	asmbl_7504,asmbl_7505	none	STRG.14507.1,STRG.14507.3,Trinity_GG_25345_c0_g1_i8,Trinity_GG_25345_c1_g1_i1,blat.proc3825170.chain_3085,blat.proc3825170.chain_3087,blat.proc3825170.chain_3088,blat.proc3825170.chain_3090	8	blat.proc3825170.chain_3089	1
scaffold_18	alt_acceptor	8382800	8382801	+	asmbl_20828	none	STRG.21510.1,blat.proc3825174.chain_2571	2	STRG.21510.2	1
scaffold_17	alternate_exon	787989	791548	+	asmbl_18575	none	blat.proc3825174.chain_823	1	STRG.19934.3	1
scaffold_4	spliced_intron	8746094	8746165	+	asmbl_41575	none	blat.proc3825166.chain_1122	1	STRG.4690.1	1
scaffold_8	starts_in_intron	14251308	14251308	+	asmbl_53366	none	blat.proc3825168.chain_3075	1	STRG.10524.1	1
scaffold_14	starts_in_intron	364508	364508	-	asmbl_12827	none	blat.proc3825156.chain_1530	1	STRG.16729.1,blat.proc3825156.chain_1531	2
scaffold_7	alt_acceptor	1229828	1229829	+	asmbl_49605,asmbl_49607	none	STRG.8637.6,Trinity_GG_22033_c0_g1_i5	2	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.7,Trinity_GG_22033_c0_g1_i16,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076,blat.proc3825168.chain_1080	9
scaffold_12	spliced_intron	4783952	4784097	-	asmbl_8448,asmbl_8450,asmbl_8452,asmbl_8453	none	STRG.14660.1,STRG.14660.2,STRG.14660.4,blat.proc3825154.chain_3145,blat.proc3825154.chain_3147,blat.proc3825154.chain_3148,blat.proc3825154.chain_3152	7	STRG.14660.3,blat.proc3825154.chain_3150,blat.proc3825154.chain_3151,blat.proc3825154.chain_3153	4
scaffold_8	ends_in_intron	6309061	6309061	+	asmbl_52961	none	blat.proc3825168.chain_2625	1	STRG.10033.1,blat.proc3825168.chain_2626,blat.proc3825168.chain_2629	3
scaffold_1	alt_acceptor	10950930	10950931	+	asmbl_2035,asmbl_2038	none	STRG.715.1,STRG.715.3,blat.proc3825164.chain_858,blat.proc3825164.chain_864	4	blat.proc3825164.chain_859,blat.proc3825164.chain_863	2
scaffold_27	alternate_exon	973582	975119	+	asmbl_35974	none	Trinity_GG_33133_c0_g1_i3,blat.proc3825178.chain_1718	2	Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	2
scaffold_3	alt_donor	3272018	3272019	-	asmbl_38761,asmbl_38767	none	STRG.3073.1,blat.proc3825148.chain_2952,blat.proc3825148.chain_2954	3	STRG.3073.3,blat.proc3825148.chain_2950,blat.proc3825148.chain_2951	3
scaffold_22	spliced_intron	10004898	10005099	+	asmbl_30336	none	blat.proc3825176.chain_2411	1	STRG.25343.1	1
scaffold_19	spliced_intron	5463673	5463985	+	asmbl_21373,asmbl_21377	none	STRG.22117.1,blat.proc3825174.chain_3157,blat.proc3825174.chain_3160	3	STRG.22117.4	1
scaffold_18	alt_acceptor	6810988	6810989	+	asmbl_20683	none	STRG.21392.2	1	STRG.21392.1,STRG.21392.4	2
scaffold_12	alternate_exon	7413884	7413913	-	asmbl_8581	none	STRG.14824.3,blat.proc3825154.chain_3314	2	STRG.14824.1,blat.proc3825154.chain_3313	2
scaffold_5	skipped_exon	17036765	17037141	+	asmbl_46133	none	STRG.6881.2,Trinity_GG_21063_c0_g1_i2,blat.proc3825166.chain_3041	3	STRG.6881.1,Trinity_GG_21063_c0_g1_i1,blat.proc3825166.chain_3040	3
scaffold_17	retained_intron	9531820	9532877	+	asmbl_19108,asmbl_19109	none	blat.proc3825174.chain_1398,blat.proc3825174.chain_1401	2	STRG.20578.3,Trinity_GG_28562_c0_g1_i2,blat.proc3825174.chain_1395	3
scaffold_1	ends_in_intron	970707	970707	-	asmbl_42	none	blat.proc3825148.chain_79	1	STRG.58.1,STRG.58.2,Trinity_GG_40_c0_g1_i1,blat.proc3825148.chain_78,blat.proc3825148.chain_80,blat.proc3825148.chain_81	6
scaffold_14	alt_acceptor	11760908	11760909	-	asmbl_13528	none	STRG.17520.3,blat.proc3825156.chain_2319	2	STRG.17520.1,STRG.17520.2,blat.proc3825156.chain_2320,blat.proc3825156.chain_2321	4
scaffold_21	starts_in_intron	1282493	1282493	-	asmbl_27398	none	blat.proc3825160.chain_957	1	STRG.23803.1,Trinity_GG_13283_c1_g1_i4,blat.proc3825160.chain_956	3
scaffold_14	ends_in_intron	1327291	1327291	+	asmbl_11819	none	STRG.16784.2,Trinity_GG_26558_c2_g1_i1,blat.proc3825172.chain_1578	3	STRG.16784.1,blat.proc3825172.chain_1576	2
scaffold_6	alt_acceptor	7172553	7172554	+	asmbl_47056,asmbl_47057	none	blat.proc3825168.chain_83,blat.proc3825168.chain_84	2	STRG.7628.1,STRG.7628.2,STRG.7628.4	3
scaffold_3	ends_in_intron	14588165	14588165	-	asmbl_39405	none	Trinity_GG_2081_c0_g1_i1,blat.proc3825148.chain_3682	2	STRG.3803.1,STRG.3803.2,Trinity_GG_2081_c0_g1_i2,blat.proc3825148.chain_3681,blat.proc3825148.chain_3683	5
scaffold_11	spliced_intron	1983670	1983757	-	asmbl_6462	none	STRG.13360.2,blat.proc3825154.chain_1942	2	blat.proc3825154.chain_1944	1
scaffold_2	retained_exon	6761639	6761771	-	asmbl_23231,asmbl_23233	none	STRG.2029.1,STRG.2029.4,blat.proc3825148.chain_2011	3	STRG.2029.3,blat.proc3825148.chain_2013	2
scaffold_10	alternate_exon	3790922	3792613	-	asmbl_4229,asmbl_4231	none	STRG.12212.1,STRG.12212.3,blat.proc3825154.chain_782	3	blat.proc3825154.chain_783	1
scaffold_25	alt_donor	1296815	1296816	+	asmbl_33371	none	blat.proc3825162.chain_540	1	STRG.27172.1	1
scaffold_5	retained_intron	11434446	11434524	-	asmbl_44408	none	blat.proc3825150.chain_2567	1	STRG.6406.1,blat.proc3825150.chain_2568	2
scaffold_4	alt_acceptor	8081251	8081252	+	asmbl_41536	none	STRG.4627.1,blat.proc3825166.chain_1102	2	STRG.4627.2	1
scaffold_2	alternate_exon	13446017	13446506	-	asmbl_23520	none	blat.proc3825148.chain_2362	1	blat.proc3825148.chain_2364	1
scaffold_18	starts_in_intron	12401088	12401088	-	asmbl_20142	none	blat.proc3825158.chain_2584	1	STRG.21709.1,STRG.21709.2,STRG.21709.3,STRG.21709.4	4
scaffold_2	ends_in_intron	15865135	15865135	+	asmbl_25081	none	blat.proc3825164.chain_2832	1	STRG.2535.1,blat.proc3825164.chain_2830	2
scaffold_19	alt_acceptor	11466827	11466828	-	asmbl_22391	none	STRG.22477.1,blat.proc3825158.chain_3230	2	STRG.22477.2	1
scaffold_18	retained_exon	3918127	3918460	-	asmbl_19783	none	STRG.21203.4	1	STRG.21203.2	1
scaffold_26	ends_in_intron	5868509	5868509	-	asmbl_35631	none	blat.proc3825162.chain_1524	1	STRG.28290.1,blat.proc3825162.chain_1523	2
scaffold_21	spliced_intron	5183291	5183495	+	asmbl_28557	none	STRG.24055.1,Trinity_GG_30635_c0_g1_i1,blat.proc3825176.chain_1252	3	Trinity_GG_30635_c0_g1_i2,blat.proc3825176.chain_1251	2
scaffold_23	ends_in_intron	2996160	2996160	-	asmbl_30768	none	Trinity_GG_14424_c1_g1_i1,blat.proc3825160.chain_2956	2	STRG.25748.1,STRG.25748.4,STRG.25748.5	3
scaffold_6	alt_donor	10483621	10483622	-	asmbl_48704	none	STRG.7885.2,blat.proc3825152.chain_275	2	STRG.7885.1,blat.proc3825152.chain_276	2
scaffold_17	spliced_intron	8871672	8871801	-	asmbl_18130,asmbl_18131	none	STRG.20504.1,STRG.20504.2,blat.proc3825158.chain_1541	3	STRG.20504.3,blat.proc3825158.chain_1540	2
scaffold_8	retained_intron	18084290	18084429	-	asmbl_52503,asmbl_52506,asmbl_52508	none	STRG.10710.2,STRG.10710.3,STRG.10710.4,Trinity_GG_5955_c0_g1_i3,blat.proc3825152.chain_2981	5	STRG.10710.1,STRG.10710.5,Trinity_GG_5955_c0_g1_i2,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2979,blat.proc3825152.chain_2982	6
scaffold_12	alternate_exon	4213632	4214485	+	asmbl_7592,asmbl_7593	none	STRG.14601.2,STRG.14601.3	2	STRG.14601.4,blat.proc3825170.chain_3168	2
scaffold_18	alt_donor	6809685	6809686	+	asmbl_20684	none	STRG.21392.1	1	STRG.21392.2,STRG.21392.4	2
scaffold_7	retained_intron	7534643	7534673	-	asmbl_50948	none	Trinity_GG_5092_c0_g1_i1	1	STRG.9007.1	1
scaffold_27	spliced_intron	315477	315621	-	asmbl_36661,asmbl_36663	none	STRG.28557.3,STRG.28557.4	2	STRG.28557.1,STRG.28557.2,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725,blat.proc3825162.chain_1728	5
scaffold_25	spliced_intron	6311974	6313061	-	asmbl_34349	none	STRG.27516.2,blat.proc3825162.chain_906	2	Trinity_GG_15440_c0_g1_i1,blat.proc3825162.chain_907	2
scaffold_26	spliced_intron	5945002	5945154	-	asmbl_35652	none	STRG.28306.2,Trinity_GG_15823_c1_g1_i1,blat.proc3825162.chain_1511	3	STRG.28306.1,Trinity_GG_15823_c1_g1_i2,blat.proc3825162.chain_1510	3
scaffold_4	retained_intron	4413750	4414043	+	asmbl_41244	none	STRG.4349.2,Trinity_GG_19749_c0_g1_i11,blat.proc3825166.chain_840,blat.proc3825166.chain_846	4	STRG.4349.1,STRG.4349.4,blat.proc3825166.chain_841,blat.proc3825166.chain_851	4
scaffold_12	retained_intron	6943372	6943864	-	asmbl_8546,asmbl_8548	none	STRG.14763.2,Trinity_GG_8221_c0_g1_i4,Trinity_GG_8241_c0_g1_i3,blat.proc3825154.chain_3245	4	STRG.14763.1,blat.proc3825154.chain_3246	2
scaffold_12	alt_acceptor	6420181	6420182	+	asmbl_7680,asmbl_7681,asmbl_7684	none	STRG.14753.1,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274,blat.proc3825170.chain_3275	4	STRG.14753.2,STRG.14753.3	2
scaffold_15	ends_in_intron	6104095	6104095	-	asmbl_14246	none	Trinity_GG_10288_c0_g1_i2,blat.proc3825156.chain_3142	2	STRG.18273.1,blat.proc3825156.chain_3140,blat.proc3825156.chain_3141	3
scaffold_15	alt_donor	12000402	12000403	-	asmbl_14547,asmbl_14548	none	STRG.18639.1,STRG.18639.3,Trinity_GG_10485_c0_g1_i2,Trinity_GG_10485_c0_g1_i3,blat.proc3825156.chain_3531,blat.proc3825156.chain_3534	6	STRG.18639.6,Trinity_GG_10485_c0_g1_i6,blat.proc3825156.chain_3529	3
scaffold_16	starts_in_intron	290542	290542	+	asmbl_16016	none	Trinity_GG_27744_c0_g1_i2,blat.proc3825172.chain_3687	2	STRG.19019.1,STRG.19019.2,blat.proc3825172.chain_3688,blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	5
scaffold_3	ends_in_intron	11299196	11299196	+	asmbl_40341	none	Trinity_GG_19335_c0_g1_i1,blat.proc3825166.chain_91	2	STRG.3556.2,blat.proc3825166.chain_92	2
scaffold_11	alt_acceptor	334293	334294	+	asmbl_5285	none	STRG.13269.2,blat.proc3825170.chain_1834	2	STRG.13269.1,STRG.13269.3,blat.proc3825170.chain_1831	3
scaffold_17	alt_acceptor	9832728	9832729	-	asmbl_18197,asmbl_18198,asmbl_18202,asmbl_18203	none	STRG.20598.1,STRG.20598.4,blat.proc3825158.chain_1555,blat.proc3825158.chain_1556,blat.proc3825158.chain_1557,blat.proc3825158.chain_1558	6	STRG.20598.2,STRG.20598.3,STRG.20598.5	3
scaffold_8	alt_acceptor	4186034	4186035	+	asmbl_52817	none	STRG.9897.1,blat.proc3825168.chain_2471	2	blat.proc3825168.chain_2473	1
scaffold_6	ends_in_intron	13973146	13973146	+	asmbl_47559	none	Trinity_GG_21793_c0_g1_i2,blat.proc3825168.chain_644	2	STRG.8149.1,Trinity_GG_21793_c0_g1_i3,blat.proc3825168.chain_645,blat.proc3825168.chain_646	4
scaffold_7	retained_intron	13205784	13205988	+	asmbl_50316,asmbl_50317	none	STRG.9432.2,blat.proc3825168.chain_1975	2	STRG.9432.1,blat.proc3825168.chain_1973	2
scaffold_9	retained_intron	17851504	17851736	+	asmbl_54653,asmbl_54654,asmbl_54658	none	STRG.11873.1,STRG.11873.3,Trinity_GG_23881_c0_g1_i10,blat.proc3825170.chain_573	4	Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_572	2
scaffold_19	starts_in_intron	12332887	12332887	+	asmbl_21785	none	Trinity_GG_29751_c0_g1_i5,blat.proc3825174.chain_3505	2	STRG.22560.1,Trinity_GG_29751_c0_g1_i2,blat.proc3825174.chain_3506	3
scaffold_5	ends_in_intron	1631839	1631839	+	asmbl_45135	none	STRG.5721.2,blat.proc3825166.chain_1962	2	STRG.5721.1	1
scaffold_7	alternate_exon	13867076	13867290	-	asmbl_51321,asmbl_51322	none	STRG.9480.4,STRG.9480.5	2	STRG.9480.1,blat.proc3825152.chain_1822	2
scaffold_13	alt_donor	13972082	13972083	+	asmbl_11417	none	STRG.16448.2	1	blat.proc3825172.chain_1171,blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	3
scaffold_1	starts_in_intron	5996659	5996659	-	asmbl_312	none	blat.proc3825148.chain_398	1	STRG.404.1,STRG.404.2,STRG.404.3,blat.proc3825148.chain_397,blat.proc3825148.chain_399,blat.proc3825148.chain_400,blat.proc3825148.chain_402,blat.proc3825148.chain_403	8
scaffold_18	alt_donor	6609209	6609210	-	asmbl_19906	none	STRG.21375.2	1	STRG.21375.1	1
scaffold_16	skipped_exon	9625301	9625822	-	asmbl_17288	none	STRG.19566.2,blat.proc3825158.chain_701	2	STRG.19566.1,blat.proc3825158.chain_702	2
scaffold_9	alternate_exon	6438873	6438969	-	asmbl_55063	none	blat.proc3825152.chain_3332	1	STRG.11181.1,STRG.11181.3,blat.proc3825152.chain_3331,blat.proc3825152.chain_3333	4
scaffold_1	retained_exon	18763419	18763491	+	asmbl_2570	none	STRG.1311.3	1	STRG.1311.1,STRG.1311.2	2
scaffold_16	skipped_exon	10105062	10105306	+	asmbl_16518,asmbl_16520	none	STRG.19593.1,blat.proc3825174.chain_481	2	STRG.19593.2,blat.proc3825174.chain_480	2
scaffold_12	skipped_exon	8824736	8825679	+	asmbl_7828	none	Trinity_GG_25551_c0_g1_i5,blat.proc3825170.chain_3463	2	STRG.14893.1,Trinity_GG_25551_c0_g1_i1,Trinity_GG_25551_c0_g1_i2,Trinity_GG_25551_c0_g1_i6,blat.proc3825170.chain_3464,blat.proc3825170.chain_3465,blat.proc3825170.chain_3467	7
scaffold_7	retained_intron	11145104	11146469	+	asmbl_50150,asmbl_50151,asmbl_50153,asmbl_50154,asmbl_50155	none	STRG.9262.2,blat.proc3825168.chain_1784,blat.proc3825168.chain_1785,blat.proc3825168.chain_1786,blat.proc3825168.chain_1788,blat.proc3825168.chain_1790,blat.proc3825168.chain_1791	7	STRG.9262.1,blat.proc3825168.chain_1787,blat.proc3825168.chain_1789	3
scaffold_26	spliced_intron	902566	902678	+	asmbl_34710	none	STRG.27895.1,blat.proc3825178.chain_907	2	Trinity_GG_32665_c0_g1_i1,blat.proc3825178.chain_906	2
scaffold_25	spliced_intron	8705024	8705177	+	asmbl_33758,asmbl_33759	none	STRG.27702.3,blat.proc3825178.chain_771	2	Trinity_GG_32580_c0_g1_i11,Trinity_GG_32580_c0_g1_i5,blat.proc3825178.chain_763,blat.proc3825178.chain_764	4
scaffold_20	alt_acceptor	5551048	5551049	-	asmbl_25767,asmbl_25769,asmbl_25771	none	STRG.23182.1,STRG.23182.2,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_217	5	STRG.23182.3,STRG.23182.4,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216	5
scaffold_14	starts_in_intron	7451892	7451892	-	asmbl_13202	none	STRG.17187.3,Trinity_GG_9626_c1_g1_i1,blat.proc3825156.chain_1984	3	STRG.17187.1,STRG.17187.2,blat.proc3825156.chain_1982,blat.proc3825156.chain_1983	4
scaffold_1	starts_in_intron	5206873	5206873	+	asmbl_1713,asmbl_1714,asmbl_1715,asmbl_1716,asmbl_1717,asmbl_1718	none	blat.proc3825164.chain_464,blat.proc3825164.chain_465,blat.proc3825164.chain_468,blat.proc3825164.chain_470,blat.proc3825164.chain_471,blat.proc3825164.chain_474	6	STRG.329.1,STRG.329.3,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_476	5
scaffold_7	retained_intron	12363591	12363962	-	asmbl_51199,asmbl_51202,asmbl_51203	none	STRG.9334.2,blat.proc3825152.chain_1706,blat.proc3825152.chain_1710	3	STRG.9334.1,Trinity_GG_5256_c0_g1_i2,Trinity_GG_5256_c0_g1_i3,blat.proc3825152.chain_1708,blat.proc3825152.chain_1709	5
scaffold_17	alt_donor	1732595	1732596	-	asmbl_17732	none	STRG.20008.1,blat.proc3825158.chain_1001	2	STRG.20008.2,blat.proc3825158.chain_1002	2
scaffold_8	alt_acceptor	3062772	3062773	-	asmbl_51727	none	STRG.9824.1	1	STRG.9824.2	1
scaffold_16	alternate_exon	6118560	6118617	+	asmbl_16271	none	STRG.19343.2	1	STRG.19343.1,blat.proc3825174.chain_239,blat.proc3825174.chain_242,blat.proc3825174.chain_244	4
scaffold_18	starts_in_intron	366793	366793	+	asmbl_20300	none	Trinity_GG_28853_c0_g1_i1,blat.proc3825174.chain_1906	2	STRG.20988.1,blat.proc3825174.chain_1905	2
scaffold_17	alt_acceptor	2566629	2566630	+	asmbl_18663,asmbl_18666	none	STRG.20057.2,STRG.20057.3,blat.proc3825174.chain_934	3	STRG.20057.1,blat.proc3825174.chain_935	2
scaffold_8	retained_exon	11572891	11572942	+	asmbl_53238	none	STRG.10354.1,blat.proc3825168.chain_2946	2	STRG.10354.2,Trinity_GG_23090_c0_g1_i2,blat.proc3825168.chain_2945	3
scaffold_1	alternate_exon	20342580	20357183	+	asmbl_2619	none	STRG.1396.1,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	3	STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593	5
scaffold_13	ends_in_intron	5921848	5921848	-	asmbl_9751	none	Trinity_GG_8926_c0_g1_i1,blat.proc3825156.chain_752	2	STRG.15907.1,STRG.15907.2,Trinity_GG_8926_c0_g1_i2,Trinity_GG_8926_c0_g1_i3,blat.proc3825156.chain_751,blat.proc3825156.chain_753	6
scaffold_6	starts_in_intron	4311221	4311221	+	asmbl_46876	none	Trinity_GG_21378_c0_g1_i2,blat.proc3825166.chain_3631	2	STRG.7406.1,Trinity_GG_21378_c0_g1_i1,blat.proc3825166.chain_3630	3
scaffold_6	starts_in_intron	15537027	15537027	-	asmbl_49076	none	blat.proc3825152.chain_654	1	STRG.8309.1,blat.proc3825152.chain_655	2
scaffold_6	ends_in_intron	4991542	4991542	+	asmbl_46901	none	STRG.7472.2,blat.proc3825166.chain_3596	2	STRG.7472.1,STRG.7472.3,blat.proc3825166.chain_3595	3
scaffold_3	alt_acceptor	14393553	14393554	+	asmbl_40517	none	STRG.3783.2	1	STRG.3783.1,Trinity_GG_19433_c0_g1_i1,blat.proc3825166.chain_278	3
scaffold_13	retained_exon	6293320	6293472	+	asmbl_10918,asmbl_10921	none	STRG.15925.2,blat.proc3825172.chain_658,blat.proc3825172.chain_659	3	STRG.15925.1,blat.proc3825172.chain_660,blat.proc3825172.chain_661	3
scaffold_12	alt_donor	14043881	14043882	-	asmbl_8961,asmbl_8964	none	STRG.15234.2,blat.proc3825156.chain_37	2	STRG.15234.1,blat.proc3825156.chain_39	2
scaffold_26	spliced_intron	3811137	3811207	-	asmbl_35506	none	STRG.28081.1,blat.proc3825162.chain_1362	2	STRG.28081.2,blat.proc3825162.chain_1361	2
scaffold_11	alt_acceptor	9151130	9151131	+	asmbl_5875	none	STRG.13954.3	1	STRG.13954.1,STRG.13954.2,blat.proc3825170.chain_2540,blat.proc3825170.chain_2541,blat.proc3825170.chain_2542	5
scaffold_5	retained_exon	15017060	15017204	+	asmbl_45973	none	STRG.6692.1,Trinity_GG_20952_c0_g1_i1	2	STRG.6692.2,Trinity_GG_20952_c0_g1_i2	2
scaffold_2	alt_acceptor	9241516	9241517	-	asmbl_23369	none	STRG.2167.1,blat.proc3825148.chain_2208	2	STRG.2167.2	1
scaffold_4	alt_acceptor	14626635	14626636	+	asmbl_41902	none	STRG.5088.2	1	STRG.5088.1,blat.proc3825166.chain_1506	2
scaffold_5	starts_in_intron	4683744	4683744	-	asmbl_43984	none	STRG.5929.2,blat.proc3825150.chain_2076	2	STRG.5929.1,STRG.5929.4,blat.proc3825150.chain_2075,blat.proc3825150.chain_2078,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084,blat.proc3825150.chain_2085	9
scaffold_12	ends_in_intron	10605027	10605027	+	asmbl_7949	none	blat.proc3825170.chain_3577	1	STRG.15036.1,STRG.15036.2,STRG.15036.3,STRG.15036.4,blat.proc3825170.chain_3576,blat.proc3825170.chain_3579,blat.proc3825170.chain_3580	7
scaffold_5	spliced_intron	14261932	14262394	+	asmbl_45919,asmbl_45921,asmbl_45923	none	STRG.6638.4,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	3	STRG.6638.3,Trinity_GG_20907_c0_g1_i8,blat.proc3825166.chain_2783,blat.proc3825166.chain_2787	4
scaffold_18	alt_donor	2050958	2050959	-	asmbl_19690,asmbl_19693	none	STRG.21094.1,STRG.21094.3,Trinity_GG_11827_c1_g1_i1,blat.proc3825158.chain_2074	4	STRG.21094.2	1
scaffold_25	starts_in_intron	9503855	9503855	-	asmbl_34504,asmbl_34505	none	blat.proc3825162.chain_1075,blat.proc3825162.chain_1076	2	STRG.27764.1,blat.proc3825162.chain_1078	2
scaffold_25	alternate_exon	2955038	2955567	-	asmbl_34075	none	STRG.27245.1,Trinity_GG_15236_c0_g1_i1,blat.proc3825162.chain_565,blat.proc3825162.chain_582	4	blat.proc3825162.chain_581	1
scaffold_8	spliced_intron	4083068	4083191	+	asmbl_52809,asmbl_52810,asmbl_52811,asmbl_52813	none	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2479,blat.proc3825168.chain_2480,blat.proc3825168.chain_2481	5	blat.proc3825168.chain_2482	1
scaffold_1	retained_exon	11055237	11055338	-	asmbl_603,asmbl_606	none	STRG.723.1,STRG.723.2,blat.proc3825148.chain_696,blat.proc3825148.chain_697	4	STRG.723.3	1
scaffold_11	retained_intron	8050351	8050449	+	asmbl_5710	none	STRG.13812.1,Trinity_GG_24922_c0_g2_i2,blat.proc3825170.chain_2360	3	STRG.13812.2,Trinity_GG_24922_c0_g1_i1,blat.proc3825170.chain_2359	3
scaffold_4	alt_donor	18291793	18291794	+	asmbl_42093	none	STRG.5428.4,blat.proc3825166.chain_1744	2	STRG.5428.1,STRG.5428.2,STRG.5428.5,blat.proc3825166.chain_1743,blat.proc3825166.chain_1745	5
scaffold_1	retained_intron	14354987	14355171	-	asmbl_898,asmbl_899,asmbl_900,asmbl_901	none	Trinity_GG_547_c0_g1_i3,blat.proc3825148.chain_1036,blat.proc3825148.chain_1037,blat.proc3825148.chain_1038,blat.proc3825148.chain_1039	5	blat.proc3825148.chain_1040	1
scaffold_8	starts_in_intron	13153229	13153229	-	asmbl_52275,asmbl_52276	none	blat.proc3825152.chain_2724,blat.proc3825152.chain_2725	2	blat.proc3825152.chain_2726,blat.proc3825152.chain_2727	2
scaffold_17	spliced_intron	8875826	8875983	+	asmbl_19038	none	STRG.20506.1,blat.proc3825174.chain_1365	2	STRG.20506.2,blat.proc3825174.chain_1363	2
scaffold_8	alt_acceptor	3615919	3615920	+	asmbl_52789,asmbl_52790	none	STRG.9863.3,STRG.9863.4	2	STRG.9863.2,blat.proc3825168.chain_2408	2
scaffold_17	retained_exon	791861	791911	+	asmbl_18574,asmbl_18576	none	STRG.19934.1,STRG.19934.2	2	blat.proc3825174.chain_823	1
scaffold_16	alt_donor	12022851	12022852	-	asmbl_17382,asmbl_17383	none	STRG.19729.1,STRG.19729.2,blat.proc3825158.chain_787,blat.proc3825158.chain_788	4	STRG.19729.3	1
scaffold_12	alt_acceptor	10205978	10205979	+	asmbl_7916	none	STRG.14997.2	1	STRG.14997.1,blat.proc3825170.chain_3565	2
scaffold_6	retained_intron	8174054	8174789	-	asmbl_48540,asmbl_48543	none	Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_92,blat.proc3825152.chain_95	3	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_91,blat.proc3825152.chain_93	6
scaffold_12	retained_intron	5039289	5039416	-	asmbl_8476	none	blat.proc3825154.chain_3106	1	STRG.14681.1,STRG.14681.2,blat.proc3825154.chain_3105	3
scaffold_5	alternate_exon	19274911	19275221	+	asmbl_46313	none	STRG.7028.2,Trinity_GG_21182_c0_g1_i3,blat.proc3825166.chain_3242	3	STRG.7028.1,Trinity_GG_21182_c0_g1_i4,blat.proc3825166.chain_3243	3
scaffold_2	spliced_intron	18771893	18771973	+	asmbl_25249	none	STRG.2756.2	1	STRG.2756.1	1
scaffold_18	alt_acceptor	1895347	1895348	-	asmbl_19659,asmbl_19664	none	STRG.21081.6,STRG.21081.7	2	STRG.21081.10,STRG.21081.8,STRG.21081.9,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016	5
scaffold_2	alt_donor	18610514	18610515	-	asmbl_23801	none	STRG.2736.3,Trinity_GG_1475_c0_g1_i1,blat.proc3825148.chain_2626	3	STRG.2736.2	1
scaffold_16	spliced_intron	8646214	8646704	+	asmbl_16435,asmbl_16438,asmbl_16442	none	STRG.19493.1,blat.proc3825174.chain_411,blat.proc3825174.chain_415,blat.proc3825174.chain_416	4	STRG.19493.2,Trinity_GG_27990_c0_g1_i7,blat.proc3825174.chain_413,blat.proc3825174.chain_414	4
scaffold_6	alternate_exon	8578670	8581115	+	asmbl_47150,asmbl_47152	none	STRG.7738.3,blat.proc3825168.chain_179	2	STRG.7738.4	1
scaffold_13	retained_intron	2321236	2321329	+	asmbl_10609	none	blat.proc3825172.chain_232	1	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.6,STRG.15564.7	6
scaffold_1	alternate_exon	8753178	8753403	-	asmbl_494	none	STRG.579.3,blat.proc3825148.chain_597	2	STRG.579.1,STRG.579.2,blat.proc3825148.chain_599,blat.proc3825148.chain_602	4
scaffold_25	alternate_exon	7340858	7343655	+	asmbl_33671,asmbl_33672,asmbl_33673	none	STRG.27589.1,STRG.27589.2,STRG.27589.3,Trinity_GG_32527_c1_g1_i1,blat.proc3825178.chain_699	5	STRG.27589.4	1
scaffold_322	alt_acceptor	6574	6575	-	asmbl_40972	none	STRG.30281.2	1	STRG.30281.1	1
scaffold_3	starts_in_intron	1762638	1762638	+	asmbl_39877	none	blat.proc3825164.chain_3241	1	STRG.2993.1,blat.proc3825164.chain_3236,blat.proc3825164.chain_3237,blat.proc3825164.chain_3238,blat.proc3825164.chain_3239,blat.proc3825164.chain_3240	6
scaffold_9	alternate_exon	16739206	16739491	-	asmbl_55621	none	STRG.11819.2,Trinity_GG_6538_c0_g1_i1,blat.proc3825154.chain_307	3	STRG.11819.1	1
scaffold_17	alt_acceptor	2432698	2432699	+	asmbl_18652	none	STRG.20033.1,Trinity_GG_28268_c0_g1_i2,blat.proc3825174.chain_880	3	STRG.20033.2,Trinity_GG_28268_c0_g1_i1,blat.proc3825174.chain_879	3
scaffold_18	spliced_intron	6009520	6009771	+	asmbl_20654,asmbl_20656	none	STRG.21369.1,blat.proc3825174.chain_2355,blat.proc3825174.chain_2359	3	blat.proc3825174.chain_2357	1
scaffold_13	starts_in_intron	7270199	7270199	-	asmbl_9870	none	blat.proc3825156.chain_943	1	STRG.16029.1,blat.proc3825156.chain_939,blat.proc3825156.chain_940,blat.proc3825156.chain_941	4
scaffold_21	retained_intron	8129161	8131427	-	asmbl_27890	none	STRG.24349.1,Trinity_GG_13590_c0_g1_i7,Trinity_GG_13590_c2_g1_i1,Trinity_GG_13590_c4_g1_i1,blat.proc3825160.chain_1513,blat.proc3825160.chain_1515,blat.proc3825160.chain_1517	7	STRG.24349.5,blat.proc3825160.chain_1508,blat.proc3825160.chain_1509,blat.proc3825160.chain_1512	4
scaffold_8	spliced_intron	7508319	7508462	+	asmbl_52991	none	STRG.10076.1,blat.proc3825168.chain_2644	2	STRG.10076.2,Trinity_GG_22920_c0_g1_i1,blat.proc3825168.chain_2643	3
scaffold_5	alt_acceptor	9711982	9711983	+	asmbl_45634	none	STRG.6283.2,blat.proc3825166.chain_2495	2	STRG.6283.1	1
scaffold_5	alt_donor	10600049	10600050	-	asmbl_44371	none	STRG.6346.3,blat.proc3825150.chain_2546	2	STRG.6346.1,STRG.6346.2,blat.proc3825150.chain_2547,blat.proc3825150.chain_2548	4
scaffold_3	starts_in_intron	7593333	7593333	+	asmbl_40171	none	blat.proc3825164.chain_3625	1	STRG.3351.1,Trinity_GG_19221_c0_g1_i1,blat.proc3825164.chain_3626,blat.proc3825164.chain_3629,blat.proc3825164.chain_3630	5
scaffold_20	starts_in_intron	11595334	11595334	-	asmbl_26164	none	blat.proc3825160.chain_705	1	STRG.23678.1,STRG.23678.2	2
scaffold_10	skipped_exon	9360859	9363246	+	asmbl_3374	none	blat.proc3825170.chain_1250	1	STRG.12676.1,blat.proc3825170.chain_1252	2
scaffold_10	alternate_exon	770740	770850	+	asmbl_2872	none	STRG.11971.6	1	STRG.11971.1,blat.proc3825170.chain_654	2
scaffold_19	retained_intron	9534078	9534340	+	asmbl_21608	none	STRG.22388.2,blat.proc3825174.chain_3376	2	STRG.22388.1,blat.proc3825174.chain_3377	2
scaffold_14	ends_in_intron	15470705	15470705	+	asmbl_12601	none	blat.proc3825172.chain_2422	1	STRG.17781.1,blat.proc3825172.chain_2424,blat.proc3825172.chain_2425	3
scaffold_14	retained_exon	7495943	7496652	+	asmbl_12168	none	STRG.17193.1,blat.proc3825172.chain_1881	2	STRG.17193.3	1
scaffold_15	skipped_exon	3368374	3368889	-	asmbl_14092	none	STRG.18109.1	1	STRG.18109.2	1
scaffold_2	spliced_intron	950492	950626	+	asmbl_24166	none	STRG.1574.4	1	Trinity_GG_18238_c0_g1_i8	1
scaffold_26	alternate_exon	5559506	5559642	+	asmbl_35026,asmbl_35027	none	STRG.28266.2,blat.proc3825178.chain_1302	2	STRG.28266.1	1
scaffold_6	alt_acceptor	12991556	12991557	-	asmbl_48856	none	STRG.8068.1,blat.proc3825152.chain_492	2	STRG.8068.3	1
scaffold_16	retained_intron	10441689	10441848	+	asmbl_16531	none	Trinity_GG_28034_c0_g1_i3,blat.proc3825174.chain_499	2	STRG.19615.2	1
scaffold_21	retained_intron	5279754	5280675	-	asmbl_27638,asmbl_27639,asmbl_27646	none	STRG.24066.2,STRG.24066.5,Trinity_GG_13405_c0_g1_i4,blat.proc3825160.chain_1168	4	STRG.24066.1,blat.proc3825160.chain_1166	2
scaffold_14	spliced_intron	7463163	7463252	-	asmbl_13207	none	STRG.17189.3	1	STRG.17189.1	1
scaffold_24	alternate_exon	4376932	4380061	+	asmbl_32199	none	STRG.26598.2	1	blat.proc3825176.chain_3482	1
scaffold_3	starts_in_intron	15867112	15867112	+	asmbl_40586	none	Trinity_GG_19493_c0_g1_i3,blat.proc3825166.chain_378	2	STRG.3866.1,blat.proc3825166.chain_377	2
scaffold_16	spliced_intron	11303194	11303588	+	asmbl_16574	none	STRG.19659.2,Trinity_GG_28093_c1_g1_i3,blat.proc3825174.chain_599	3	STRG.19659.1,Trinity_GG_28093_c1_g1_i1,blat.proc3825174.chain_597,blat.proc3825174.chain_598	4
scaffold_6	retained_intron	17799090	17799282	-	asmbl_49201	none	blat.proc3825152.chain_849	1	STRG.8463.2,STRG.8463.3,blat.proc3825152.chain_851	3
scaffold_20	alt_donor	10384347	10384348	+	asmbl_26955	none	Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_671	2	STRG.23583.1,STRG.23583.2,STRG.23583.3,STRG.23583.4,Trinity_GG_30302_c0_g1_i1,blat.proc3825176.chain_670	6
scaffold_6	retained_intron	8643223	8643316	+	asmbl_47169	none	blat.proc3825168.chain_188	1	STRG.7754.2,STRG.7754.3,blat.proc3825168.chain_189	3
scaffold_19	alt_acceptor	678973	678974	+	asmbl_21202	none	blat.proc3825174.chain_2897	1	STRG.21850.1,blat.proc3825174.chain_2900	2
scaffold_13	alternate_exon	15039367	15040290	-	asmbl_10222	none	STRG.16553.1,blat.proc3825156.chain_1380	2	blat.proc3825156.chain_1378	1
scaffold_13	spliced_intron	5949932	5950148	-	asmbl_9756,asmbl_9758,asmbl_9759,asmbl_9760	none	STRG.15911.1,STRG.15911.2,STRG.15911.3,STRG.15911.4,blat.proc3825156.chain_755	5	STRG.15911.5,blat.proc3825156.chain_756	2
scaffold_9	alternate_exon	12630570	12631106	+	asmbl_54452	none	blat.proc3825170.chain_403	1	STRG.11586.1,STRG.11586.2,blat.proc3825170.chain_404,blat.proc3825170.chain_406	4
scaffold_12	alt_acceptor	7301393	7301394	-	asmbl_8571	none	STRG.14808.3	1	STRG.14808.1,STRG.14808.2,blat.proc3825154.chain_3319,blat.proc3825154.chain_3320	4
scaffold_20	ends_in_intron	6620090	6620090	+	asmbl_26667	none	blat.proc3825176.chain_345	1	STRG.23238.1,blat.proc3825176.chain_343	2
scaffold_1	retained_intron	1041790	1043520	+	asmbl_1452	none	STRG.62.1,Trinity_GG_17322_c0_g1_i1,Trinity_GG_17322_c1_g1_i1,blat.proc3825164.chain_90,blat.proc3825164.chain_93	5	STRG.62.2,blat.proc3825164.chain_92	2
scaffold_17	alternate_exon	2535061	2535563	-	asmbl_17761	none	blat.proc3825158.chain_1076	1	STRG.20049.1,STRG.20049.2,blat.proc3825158.chain_1071,blat.proc3825158.chain_1072,blat.proc3825158.chain_1073	5
scaffold_9	ends_in_intron	11821268	11821268	-	asmbl_55316	none	STRG.11502.5	1	STRG.11502.1	1
scaffold_4	retained_exon	7151965	7151997	+	asmbl_41465,asmbl_41466,asmbl_41469	none	STRG.4559.4,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	3	STRG.4559.1,STRG.4559.2,STRG.4559.3,STRG.4559.5	4
scaffold_12	starts_in_intron	7972314	7972314	+	asmbl_7805,asmbl_7806	none	Trinity_GG_25527_c2_g1_i1,blat.proc3825170.chain_3419	2	STRG.14862.1,blat.proc3825170.chain_3413,blat.proc3825170.chain_3417	3
scaffold_5	alternate_exon	5042497	5042890	+	asmbl_45326	none	Trinity_GG_20544_c2_g1_i1,blat.proc3825166.chain_2126,blat.proc3825166.chain_2130	3	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2127,blat.proc3825166.chain_2128	5
scaffold_26	alt_donor	7953085	7953086	-	asmbl_35726	none	STRG.28413.2,blat.proc3825162.chain_1623	2	STRG.28413.1,blat.proc3825162.chain_1622	2
scaffold_15	skipped_exon	6882902	6884459	-	asmbl_14263,asmbl_14264,asmbl_14267,asmbl_14268,asmbl_14269	none	STRG.18301.1,STRG.18301.3,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153	7	STRG.18301.2,STRG.18301.4,Trinity_GG_10293_c0_g1_i10,blat.proc3825156.chain_3154,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	6
scaffold_25	starts_in_intron	3905863	3905863	+	asmbl_33471	none	Trinity_GG_32380_c0_g1_i2,blat.proc3825178.chain_439	2	STRG.27337.1	1
scaffold_355	alt_donor	6453	6454	+	asmbl_41037	none	STRG.30299.1	1	STRG.30299.2	1
scaffold_3	alternate_exon	13701291	13702910	+	asmbl_40448	none	STRG.3717.4,Trinity_GG_19399_c0_g1_i2,Trinity_GG_19399_c1_g1_i1,blat.proc3825166.chain_217,blat.proc3825166.chain_224	5	STRG.3717.2,blat.proc3825166.chain_218	2
scaffold_15	spliced_intron	15434376	15435496	-	asmbl_14785	none	blat.proc3825156.chain_3728	1	STRG.18932.1,STRG.18932.3,Trinity_GG_10599_c0_g1_i5,Trinity_GG_10599_c0_g1_i6,blat.proc3825156.chain_3730,blat.proc3825156.chain_3732	6
scaffold_10	ends_in_intron	14620907	14620907	-	asmbl_4951	none	STRG.13007.2	1	STRG.13007.1,blat.proc3825154.chain_1559	2
scaffold_13	spliced_intron	7935604	7935878	-	asmbl_9913,asmbl_9915,asmbl_9916,asmbl_9917	none	STRG.16070.1,blat.proc3825156.chain_875,blat.proc3825156.chain_876,blat.proc3825156.chain_877,blat.proc3825156.chain_878	5	STRG.16070.2,STRG.16070.3,STRG.16070.4,blat.proc3825156.chain_874	4
scaffold_20	retained_intron	11547068	11547149	-	asmbl_26156	none	Trinity_GG_13177_c0_g1_i3,blat.proc3825160.chain_735	2	STRG.23661.1,blat.proc3825160.chain_737	2
scaffold_12	alt_acceptor	10617660	10617661	-	asmbl_8766,asmbl_8767	none	STRG.15045.1,STRG.15045.2,blat.proc3825154.chain_3499	3	STRG.15045.3	1
scaffold_25	retained_intron	996826	996894	-	asmbl_34018	none	blat.proc3825162.chain_519	1	STRG.27160.1,blat.proc3825162.chain_520,blat.proc3825162.chain_521	3
scaffold_1	starts_in_intron	2743153	2743153	-	asmbl_124	none	STRG.176.2,blat.proc3825148.chain_182	2	STRG.176.1,STRG.176.3,blat.proc3825148.chain_183,blat.proc3825148.chain_184	4
scaffold_13	starts_in_intron	2274429	2274429	-	asmbl_9446	none	blat.proc3825156.chain_396	1	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.4,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	10
scaffold_21	alt_acceptor	4600237	4600238	+	asmbl_28528	none	STRG.24013.2	1	STRG.24013.3,blat.proc3825176.chain_1210	2
scaffold_1466	starts_in_intron	1671	1671	+	asmbl_13891	none	blat.proc3825178.chain_3606	1	STRG.30606.1,blat.proc3825178.chain_3605	2
scaffold_20	alternate_exon	4232139	4232646	+	asmbl_26568	none	STRG.23109.3,blat.proc3825176.chain_284	2	STRG.23109.1,Trinity_GG_30057_c1_g1_i1,blat.proc3825176.chain_283	3
scaffold_21	spliced_intron	3189776	3190483	+	asmbl_28477,asmbl_28478	none	STRG.23947.1,blat.proc3825176.chain_1093	2	blat.proc3825176.chain_1092	1
scaffold_23	alternate_exon	10975950	10976361	+	asmbl_31903	none	STRG.26307.4	1	STRG.26307.2	1
scaffold_12	ends_in_intron	13515774	13515774	-	asmbl_8951	none	Trinity_GG_8535_c1_g1_i1,blat.proc3825156.chain_25	2	STRG.15218.1,blat.proc3825156.chain_24	2
scaffold_20	retained_intron	10787428	10787609	+	asmbl_26992,asmbl_26993,asmbl_26995	none	STRG.23606.1,STRG.23606.2,Trinity_GG_30378_c0_g1_i4,blat.proc3825176.chain_798,blat.proc3825176.chain_799	5	STRG.23606.3,blat.proc3825176.chain_797	2
scaffold_15	retained_exon	4133428	4133547	-	asmbl_14128	none	STRG.18161.1,blat.proc3825156.chain_2965	2	STRG.18161.2	1
scaffold_5	skipped_exon	186256	187984	+	asmbl_45087	none	STRG.5587.1	1	STRG.5587.2,STRG.5587.3,STRG.5587.4,STRG.5587.5	4
scaffold_18	alt_acceptor	12935863	12935864	+	asmbl_20981	none	STRG.21740.1	1	STRG.21740.4,blat.proc3825158.chain_2618	2
scaffold_17	alt_acceptor	9006435	9006436	+	asmbl_19054,asmbl_19055	none	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4	STRG.20525.3,blat.proc3825174.chain_1322	2
scaffold_15	spliced_intron	4131199	4131226	+	asmbl_15126	none	STRG.18160.3	1	STRG.18160.2,blat.proc3825172.chain_2815	2
scaffold_8	alternate_exon	17810891	17811050	+	asmbl_53507	none	STRG.10693.3,Trinity_GG_23223_c0_g1_i1,blat.proc3825168.chain_3179	3	STRG.10693.1,STRG.10693.2,STRG.10693.4,Trinity_GG_23223_c0_g1_i5,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3180,blat.proc3825168.chain_3183,blat.proc3825168.chain_3184	8
scaffold_13	spliced_intron	7002522	7002602	-	asmbl_9831	none	STRG.15988.1,blat.proc3825156.chain_829	2	STRG.15988.2	1
scaffold_15	alt_acceptor	8789450	8789451	+	asmbl_15352	none	STRG.18422.2	1	STRG.18422.1,blat.proc3825172.chain_3069	2
scaffold_2	retained_intron	7827117	7827319	-	asmbl_23282	none	STRG.2078.3,Trinity_GG_1152_c0_g1_i4,blat.proc3825148.chain_2096	3	STRG.2078.1,Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i3,blat.proc3825148.chain_2094,blat.proc3825148.chain_2095	5
scaffold_27	alt_acceptor	5927478	5927479	-	asmbl_37045	none	blat.proc3825162.chain_2239	1	STRG.29001.1	1
scaffold_26	starts_in_intron	7774483	7774483	+	asmbl_35148	none	STRG.28406.5,blat.proc3825178.chain_1506	2	Trinity_GG_33026_c0_g1_i2,blat.proc3825178.chain_1510	2
scaffold_5	retained_intron	10304680	10304767	-	asmbl_44344	none	blat.proc3825150.chain_2555	1	STRG.6333.1,blat.proc3825150.chain_2553,blat.proc3825150.chain_2554,blat.proc3825150.chain_2556	4
scaffold_2	spliced_intron	8299359	8300642	+	asmbl_24626,asmbl_24627,asmbl_24630	none	STRG.2114.1,STRG.2114.2,blat.proc3825164.chain_2307,blat.proc3825164.chain_2310,blat.proc3825164.chain_2311	5	STRG.2114.3,blat.proc3825164.chain_2306	2
scaffold_4	retained_exon	14982193	14982314	+	asmbl_41918	none	STRG.5107.2	1	STRG.5107.3,blat.proc3825166.chain_1523	2
scaffold_15	skipped_exon	15321640	15324392	+	asmbl_15747	none	STRG.18917.2,Trinity_GG_27684_c0_g1_i1,blat.proc3825172.chain_3557	3	STRG.18917.1	1
scaffold_6	alt_donor	12554877	12554878	-	asmbl_48826,asmbl_48830	none	STRG.8017.2,blat.proc3825152.chain_427	2	STRG.8017.1,blat.proc3825152.chain_423	2
scaffold_19	skipped_exon	8760674	8762277	-	asmbl_22311	none	STRG.22337.1,blat.proc3825158.chain_3139	2	STRG.22337.2,blat.proc3825158.chain_3140	2
scaffold_17	retained_exon	9005703	9005778	+	asmbl_19054,asmbl_19055	none	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4	STRG.20525.3,blat.proc3825174.chain_1322	2
scaffold_7	spliced_intron	12437710	12437791	+	asmbl_50264,asmbl_50265	none	STRG.9343.1,STRG.9343.2,blat.proc3825168.chain_1883	3	blat.proc3825168.chain_1882	1
scaffold_11	spliced_intron	170652	171007	+	asmbl_5261	none	STRG.13244.1	1	STRG.13244.2	1
scaffold_2	retained_exon	18720575	18720635	+	asmbl_25238	none	STRG.2752.1	1	STRG.2752.2	1
scaffold_9	alternate_exon	16574383	16574478	-	asmbl_55592,asmbl_55593	none	STRG.11808.1,Trinity_GG_6517_c0_g1_i1,Trinity_GG_6517_c0_g1_i2,blat.proc3825154.chain_254,blat.proc3825154.chain_255	5	STRG.11808.2	1
scaffold_7	alt_donor	3336964	3336965	-	asmbl_50787	none	STRG.8738.2,blat.proc3825152.chain_1207	2	STRG.8738.3,blat.proc3825152.chain_1205	2
scaffold_11	retained_intron	8072873	8072982	-	asmbl_6833	none	Trinity_GG_7709_c1_g1_i4,blat.proc3825154.chain_2337	2	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335,blat.proc3825154.chain_2336	4
scaffold_28	skipped_exon	3068473	3069082	+	asmbl_37432	none	STRG.29516.1,blat.proc3825178.chain_2699	2	STRG.29516.2	1
scaffold_18	retained_intron	2082391	2082658	+	asmbl_20401,asmbl_20404	none	STRG.21110.3,blat.proc3825174.chain_2026,blat.proc3825174.chain_2027	3	STRG.21110.1,STRG.21110.2,Trinity_GG_28919_c0_g1_i3,blat.proc3825174.chain_2028,blat.proc3825174.chain_2029	5
scaffold_5	retained_intron	9085103	9085212	+	asmbl_45602,asmbl_45606	none	blat.proc3825166.chain_2474,blat.proc3825166.chain_2476	2	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6
scaffold_4	alt_donor	5228661	5228662	-	asmbl_42575	none	blat.proc3825150.chain_650	1	STRG.4416.2,STRG.4416.4,blat.proc3825150.chain_648	3
scaffold_11	ends_in_intron	11340687	11340687	+	asmbl_5971	none	Trinity_GG_25087_c0_g1_i2,blat.proc3825170.chain_2648	2	STRG.14083.1,STRG.14083.2,blat.proc3825170.chain_2647	3
scaffold_16	starts_in_intron	744372	744372	-	asmbl_16899	none	blat.proc3825158.chain_186	1	STRG.19055.1,blat.proc3825158.chain_184,blat.proc3825158.chain_185,blat.proc3825158.chain_187,blat.proc3825158.chain_188,blat.proc3825158.chain_189	6
scaffold_8	spliced_intron	3615643	3615886	+	asmbl_52784	none	STRG.9863.2,blat.proc3825168.chain_2408	2	STRG.9863.1,blat.proc3825168.chain_2410	2
scaffold_19	spliced_intron	13161925	13162003	+	asmbl_21858,asmbl_21859,asmbl_21861	none	STRG.22640.1,STRG.22640.2,blat.proc3825174.chain_3673	3	blat.proc3825174.chain_3672	1
scaffold_3	alternate_exon	6063494	6063739	-	asmbl_38894,asmbl_38895,asmbl_38900	none	STRG.3258.1,STRG.3258.2,blat.proc3825148.chain_3126,blat.proc3825148.chain_3127,blat.proc3825148.chain_3128,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131	7	STRG.3258.3,blat.proc3825148.chain_3134	2
scaffold_5	alternate_exon	16203094	16203676	-	asmbl_44748	none	STRG.6805.1	1	Trinity_GG_3826_c1_g1_i1,blat.proc3825150.chain_3002	2
scaffold_16	spliced_intron	14556348	14556439	-	asmbl_17465	none	STRG.19838.1	1	Trinity_GG_11121_c0_g1_i2,blat.proc3825158.chain_873	2
scaffold_2	retained_intron	7782690	7783100	+	asmbl_24570	none	STRG.2075.4,Trinity_GG_18484_c0_g1_i1,blat.proc3825164.chain_2230,blat.proc3825164.chain_2237	4	STRG.2075.2,STRG.2075.3,STRG.2075.5,blat.proc3825164.chain_2227,blat.proc3825164.chain_2229	5
scaffold_4	retained_intron	8746094	8746165	+	asmbl_41574	none	STRG.4690.1	1	blat.proc3825166.chain_1122	1
scaffold_15	retained_intron	10768425	10768689	+	asmbl_15466	none	blat.proc3825172.chain_3216	1	STRG.18562.4,blat.proc3825172.chain_3210,blat.proc3825172.chain_3211,blat.proc3825172.chain_3212,blat.proc3825172.chain_3213	5
scaffold_8	skipped_exon	13132405	13133848	-	asmbl_52265	none	STRG.10488.1,blat.proc3825152.chain_2748	2	blat.proc3825152.chain_2749	1
scaffold_16	retained_intron	151929	152211	-	asmbl_16840	none	Trinity_GG_10685_c0_g1_i3,blat.proc3825158.chain_148	2	STRG.19010.1,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i7,Trinity_GG_10685_c0_g1_i8,blat.proc3825158.chain_147	5
scaffold_18	alt_donor	1894702	1894703	-	asmbl_19656,asmbl_19663,asmbl_19664	none	STRG.21081.3,STRG.21081.7,STRG.21081.8	3	STRG.21081.1,STRG.21081.10,STRG.21081.6,STRG.21081.9,blat.proc3825158.chain_2010,blat.proc3825158.chain_2011,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018,blat.proc3825158.chain_2019	13
scaffold_14	ends_in_intron	12148261	12148261	+	asmbl_12417	none	blat.proc3825172.chain_2279	1	STRG.17548.1,blat.proc3825172.chain_2280	2
scaffold_25	alt_acceptor	8442380	8442381	-	asmbl_34443	none	STRG.27676.1,blat.proc3825162.chain_989	2	STRG.27676.2	1
scaffold_4	retained_exon	5221540	5221661	-	asmbl_42570	none	STRG.4415.2,blat.proc3825150.chain_635	2	STRG.4415.1,Trinity_GG_2463_c0_g1_i2,blat.proc3825150.chain_634	3
scaffold_17	retained_intron	7965060	7965092	-	asmbl_18066,asmbl_18067	none	STRG.20416.1,STRG.20416.2,blat.proc3825158.chain_1467	3	STRG.20416.3	1
scaffold_1	alternate_exon	13882717	13883302	-	asmbl_853	none	STRG.996.2,blat.proc3825148.chain_1005	2	blat.proc3825148.chain_1007	1
scaffold_13	alt_donor	9338232	9338233	-	asmbl_10024	none	STRG.16201.2,blat.proc3825156.chain_1011	2	STRG.16201.1,STRG.16201.3,blat.proc3825156.chain_1010	3
scaffold_3	retained_exon	18154875	18156395	-	asmbl_39596	none	STRG.4025.2,blat.proc3825150.chain_205	2	STRG.4025.3,STRG.4025.4	2
scaffold_11	alt_donor	6109992	6109993	-	asmbl_6695	none	STRG.13675.2,Trinity_GG_7620_c0_g1_i1,blat.proc3825154.chain_2188	3	Trinity_GG_7620_c0_g1_i2,blat.proc3825154.chain_2187	2
scaffold_7	retained_exon	7184876	7184992	+	asmbl_49901,asmbl_49903	none	STRG.8975.1,STRG.8975.3,blat.proc3825168.chain_1482	3	STRG.8975.2,blat.proc3825168.chain_1480	2
scaffold_20	retained_intron	9628124	9630290	+	asmbl_26869	none	STRG.23501.1,Trinity_GG_30232_c0_g1_i1,blat.proc3825176.chain_566,blat.proc3825176.chain_567	4	STRG.23501.4	1
scaffold_26	alternate_exon	3980703	3981103	-	asmbl_35522	none	STRG.28088.2,Trinity_GG_15750_c1_g1_i1,blat.proc3825162.chain_1388	3	STRG.28088.1,blat.proc3825162.chain_1387	2
scaffold_5	retained_intron	4949952	4950472	+	asmbl_45318	none	STRG.5954.3,Trinity_GG_20574_c1_g1_i1,blat.proc3825166.chain_2184	3	STRG.5954.1,STRG.5954.2,STRG.5954.4,Trinity_GG_20574_c0_g1_i1,blat.proc3825166.chain_2183	5
scaffold_15	retained_intron	15409801	15409903	+	asmbl_15766,asmbl_15771,asmbl_15773	none	STRG.18930.4,STRG.18930.5,STRG.18930.7,blat.proc3825172.chain_3587,blat.proc3825172.chain_3591	5	STRG.18930.1,STRG.18930.2,STRG.18930.9,blat.proc3825172.chain_3588,blat.proc3825172.chain_3590	5
scaffold_17	skipped_exon	9972037	9974021	+	asmbl_19143	none	STRG.20615.3	1	STRG.20615.2,blat.proc3825174.chain_1489	2
scaffold_14	starts_in_intron	329909	329909	-	asmbl_12823,asmbl_12825	none	STRG.16724.3,Trinity_GG_9360_c0_g1_i1,blat.proc3825156.chain_1547	3	STRG.16724.1,STRG.16724.2,Trinity_GG_9360_c0_g1_i2,Trinity_GG_9360_c0_g1_i3,Trinity_GG_9360_c0_g1_i4,blat.proc3825156.chain_1546,blat.proc3825156.chain_1548,blat.proc3825156.chain_1549	8
scaffold_6	skipped_exon	16604802	16607492	+	asmbl_47710	none	STRG.8386.2	1	STRG.8386.1	1
scaffold_7	spliced_intron	12277542	12278368	+	asmbl_50238,asmbl_50241	none	STRG.9323.1,blat.proc3825168.chain_1766,blat.proc3825168.chain_1767	3	Trinity_GG_22453_c1_g1_i1,blat.proc3825168.chain_1768	2
scaffold_1	spliced_intron	8645118	8645235	-	asmbl_466,asmbl_468,asmbl_469,asmbl_471	none	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_584,blat.proc3825148.chain_585	5	blat.proc3825148.chain_581,blat.proc3825148.chain_586	2
scaffold_15	retained_exon	5742772	5742851	-	asmbl_14230,asmbl_14231,asmbl_14232	none	STRG.18261.1,STRG.18261.3,STRG.18261.4	3	STRG.18261.2	1
scaffold_14	spliced_intron	1111237	1111348	+	asmbl_11806	none	STRG.16770.2,blat.proc3825172.chain_1531	2	STRG.16770.1,blat.proc3825172.chain_1532	2
scaffold_5	ends_in_intron	19373771	19373771	-	asmbl_44907,asmbl_44909	none	STRG.7039.4,STRG.7039.5,blat.proc3825150.chain_3150	3	STRG.7039.1,Trinity_GG_3919_c0_g1_i1,blat.proc3825150.chain_3148	3
scaffold_10	retained_intron	11603598	11603890	+	asmbl_3478	none	STRG.12815.5,Trinity_GG_24381_c0_g2_i1,blat.proc3825170.chain_1430	3	STRG.12815.1,STRG.12815.2,STRG.12815.3,STRG.12815.4,blat.proc3825170.chain_1423,blat.proc3825170.chain_1424,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1428,blat.proc3825170.chain_1429	10
scaffold_8	spliced_intron	4851222	4851393	+	asmbl_52858	none	STRG.9951.1,blat.proc3825168.chain_2523	2	blat.proc3825168.chain_2528	1
scaffold_22	spliced_intron	6991765	6991914	+	asmbl_30146	none	blat.proc3825176.chain_2084	1	STRG.25025.2,Trinity_GG_31123_c0_g1_i4,blat.proc3825176.chain_2085,blat.proc3825176.chain_2086	4
scaffold_5	starts_in_intron	15703465	15703465	+	asmbl_46012	none	blat.proc3825166.chain_2904	1	STRG.6765.1,STRG.6765.2,STRG.6765.3,blat.proc3825166.chain_2903	4
scaffold_26	alt_acceptor	4819718	4819719	+	asmbl_34927,asmbl_34929,asmbl_34930,asmbl_34931	none	STRG.28202.1,STRG.28202.2,blat.proc3825178.chain_1220,blat.proc3825178.chain_1221,blat.proc3825178.chain_1222	5	blat.proc3825178.chain_1219	1
scaffold_4	retained_intron	14086400	14086753	+	asmbl_41837,asmbl_41839	none	STRG.5028.2,Trinity_GG_20098_c0_g1_i2,Trinity_GG_20098_c0_g1_i3,blat.proc3825166.chain_1409,blat.proc3825166.chain_1410	5	STRG.5028.1,Trinity_GG_20098_c0_g1_i1,blat.proc3825166.chain_1411	3
scaffold_1	alternate_exon	11069506	11069541	+	asmbl_2056	none	STRG.725.3,Trinity_GG_17736_c0_g1_i3,blat.proc3825164.chain_813	3	STRG.725.1,STRG.725.2,Trinity_GG_17736_c0_g1_i2,blat.proc3825164.chain_812	4
scaffold_4	starts_in_intron	4095213	4095213	+	asmbl_41227,asmbl_41229	none	blat.proc3825166.chain_705,blat.proc3825166.chain_709	2	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,blat.proc3825166.chain_703,blat.proc3825166.chain_704,blat.proc3825166.chain_707	7
scaffold_13	spliced_intron	10226230	10226249	-	asmbl_10053	none	STRG.16258.3	1	STRG.16258.1,STRG.16258.2,STRG.16258.4	3
scaffold_3	skipped_exon	14331851	14332118	+	asmbl_40508	none	blat.proc3825166.chain_248	1	STRG.3779.1,blat.proc3825166.chain_247,blat.proc3825166.chain_249	3
scaffold_5	retained_intron	10854006	10854093	+	asmbl_45704	none	blat.proc3825166.chain_2521	1	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	4
scaffold_6	retained_intron	16876680	16876794	-	asmbl_49171	none	STRG.8405.1,blat.proc3825152.chain_873	2	STRG.8405.2,blat.proc3825152.chain_872	2
scaffold_27	alt_acceptor	3145198	3145199	+	asmbl_36192	none	STRG.28806.2,blat.proc3825178.chain_1958	2	STRG.28806.1,blat.proc3825178.chain_1959	2
scaffold_18	alternate_exon	13436618	13438672	+	asmbl_21016	none	STRG.21786.1,Trinity_GG_29340_c0_g2_i1,blat.proc3825174.chain_2792	3	STRG.21786.2,Trinity_GG_29340_c2_g1_i1,blat.proc3825174.chain_2793	3
scaffold_13	alternate_exon	8215287	8215334	-	asmbl_9955	none	STRG.16114.1	1	STRG.16114.2,blat.proc3825156.chain_1019	2
scaffold_18	alt_donor	9682740	9682741	-	asmbl_20078,asmbl_20079	none	STRG.21580.2,STRG.21580.3,blat.proc3825158.chain_2490	3	STRG.21580.1	1
scaffold_26	alternate_exon	9608494	9608596	+	asmbl_35245	none	Trinity_GG_33085_c0_g1_i1,blat.proc3825178.chain_1632	2	STRG.28513.3	1
scaffold_1	alt_donor	18028926	18028927	-	asmbl_1077	none	STRG.1268.4	1	STRG.1268.7	1
scaffold_13	skipped_exon	393369	393774	-	asmbl_9345	none	Trinity_GG_8688_c0_g1_i24,blat.proc3825156.chain_351	2	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.5,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24
scaffold_13	retained_exon	5805415	5805510	+	asmbl_10898,asmbl_10899	none	STRG.15896.1,STRG.15896.2	2	blat.proc3825172.chain_711	1
scaffold_16	alt_donor	14627056	14627057	+	asmbl_16693,asmbl_16695	none	STRG.19857.1,STRG.19857.2,Trinity_GG_28182_c0_g1_i2,blat.proc3825174.chain_735	4	Trinity_GG_28182_c0_g1_i1,blat.proc3825174.chain_736	2
scaffold_13	alt_acceptor	14899040	14899041	-	asmbl_10217	none	STRG.16536.1,blat.proc3825156.chain_1359	2	STRG.16536.2	1
scaffold_8	starts_in_intron	9949634	9949634	-	asmbl_52083	none	blat.proc3825152.chain_2529	1	STRG.10249.1,blat.proc3825152.chain_2528	2
scaffold_3	spliced_intron	15781656	15781744	-	asmbl_39449,asmbl_39450,asmbl_39451	none	STRG.3859.1,STRG.3859.2,STRG.3859.3,blat.proc3825148.chain_3733	4	blat.proc3825148.chain_3732	1
scaffold_6	ends_in_intron	8586077	8586077	+	asmbl_47160	none	blat.proc3825168.chain_172	1	STRG.7739.1,STRG.7739.2,Trinity_GG_21555_c0_g1_i9,blat.proc3825168.chain_170,blat.proc3825168.chain_173	5
scaffold_7	retained_intron	11412972	11413205	+	asmbl_50175	none	blat.proc3825168.chain_1793	1	STRG.9288.1,Trinity_GG_22465_c0_g1_i2,blat.proc3825168.chain_1792	3
scaffold_1	alt_acceptor	12864081	12864082	+	asmbl_2261	none	STRG.914.1,blat.proc3825164.chain_1051	2	STRG.914.2	1
scaffold_167	retained_intron	11120	11315	-	asmbl_17618	none	STRG.30210.1,Trinity_GG_16951_c0_g1_i1,Trinity_GG_16951_c0_g1_i2,Trinity_GG_16951_c0_g1_i6,Trinity_GG_16951_c0_g1_i8,blat.proc3825162.chain_3351,blat.proc3825162.chain_3352,blat.proc3825162.chain_3353,blat.proc3825162.chain_3355	9	STRG.30210.2,blat.proc3825162.chain_3354	2
scaffold_1	retained_exon	13884593	13884633	-	asmbl_852	none	STRG.996.1,blat.proc3825148.chain_1004	2	STRG.996.2,STRG.996.4,blat.proc3825148.chain_1005	3
scaffold_18	retained_intron	7662268	7663046	+	asmbl_20763,asmbl_20765,asmbl_20766,asmbl_20767,asmbl_20768,asmbl_20769,asmbl_20770	none	STRG.21471.1,STRG.21471.2,STRG.21471.3,STRG.21471.5,STRG.21471.6,Trinity_GG_29183_c0_g1_i11,Trinity_GG_29183_c0_g1_i7	7	STRG.21471.4	1
scaffold_28	retained_intron	4255778	4255887	-	asmbl_38203	none	blat.proc3825162.chain_2796	1	STRG.29622.1,blat.proc3825162.chain_2794,blat.proc3825162.chain_2795	3
scaffold_13	spliced_intron	272420	275404	+	asmbl_10465	none	STRG.15434.1,blat.proc3825172.chain_198	2	STRG.15434.2,blat.proc3825172.chain_195,blat.proc3825172.chain_197	3
scaffold_4	alt_donor	4434004	4434005	+	asmbl_41269	none	STRG.4342.3	1	STRG.4342.2,STRG.4342.4,blat.proc3825166.chain_792	3
scaffold_15	retained_intron	1797670	1797717	-	asmbl_13975	none	blat.proc3825156.chain_2748	1	STRG.17982.1	1
scaffold_1	starts_in_intron	11596707	11596707	-	asmbl_641	none	blat.proc3825148.chain_738	1	STRG.766.1,blat.proc3825148.chain_739	2
scaffold_15	skipped_exon	2797848	2798457	+	asmbl_15081	none	blat.proc3825172.chain_2742	1	blat.proc3825172.chain_2741	1
scaffold_4	alt_acceptor	8182973	8182974	-	asmbl_42757	none	STRG.4638.2,blat.proc3825150.chain_863	2	STRG.4638.1,blat.proc3825150.chain_862	2
scaffold_2	starts_in_intron	892931	892931	+	asmbl_24142	none	Trinity_GG_18212_c0_g2_i7,blat.proc3825164.chain_1728	2	STRG.1566.4,blat.proc3825164.chain_1727	2
scaffold_8	alt_donor	750944	750945	+	asmbl_52666	none	STRG.9728.1,blat.proc3825168.chain_2201	2	STRG.9728.2,blat.proc3825168.chain_2200	2
scaffold_22	spliced_intron	326720	327593	+	asmbl_29846	none	STRG.24687.1,Trinity_GG_30961_c0_g1_i2,blat.proc3825176.chain_1811	3	Trinity_GG_30961_c0_g1_i1,blat.proc3825176.chain_1812	2
scaffold_26	spliced_intron	5746449	5746583	+	asmbl_35031,asmbl_35032,asmbl_35034,asmbl_35035	none	STRG.28271.1,STRG.28271.2,blat.proc3825178.chain_1356,blat.proc3825178.chain_1357	4	Trinity_GG_32933_c0_g1_i2,blat.proc3825178.chain_1358	2
scaffold_10	retained_intron	5823736	5824113	+	asmbl_3209	none	STRG.12406.1,blat.proc3825170.chain_1102	2	STRG.12406.2,Trinity_GG_24196_c0_g1_i4,blat.proc3825170.chain_1100	3
scaffold_7	alt_acceptor	12840579	12840580	-	asmbl_51270	none	STRG.9401.4,blat.proc3825152.chain_1744	2	STRG.9401.2,STRG.9401.3,Trinity_GG_5277_c0_g1_i1,blat.proc3825152.chain_1745,blat.proc3825152.chain_1746	5
scaffold_4	ends_in_intron	6350719	6350719	+	asmbl_41405	none	Trinity_GG_19807_c0_g1_i1,blat.proc3825166.chain_952	2	STRG.4505.1,Trinity_GG_19807_c0_g1_i3,blat.proc3825166.chain_953	3
scaffold_6	ends_in_intron	5196041	5196041	+	asmbl_46922	none	STRG.7496.4	1	STRG.7496.1,STRG.7496.2,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i16,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3554,blat.proc3825166.chain_3556	10
scaffold_16	alt_acceptor	3995824	3995825	+	asmbl_16162	none	STRG.19208.3,blat.proc3825174.chain_100	2	STRG.19208.1,STRG.19208.2,blat.proc3825174.chain_98,blat.proc3825174.chain_99	4
scaffold_21	alt_acceptor	5548770	5548771	+	asmbl_28576,asmbl_28577,asmbl_28579	none	STRG.24088.1,STRG.24088.2,blat.proc3825176.chain_1303,blat.proc3825176.chain_1304,blat.proc3825176.chain_1305	5	blat.proc3825176.chain_1302	1
scaffold_18	spliced_intron	7868121	7868317	+	asmbl_20799,asmbl_20800,asmbl_20801,asmbl_20803,asmbl_20806,asmbl_20807,asmbl_20808	none	STRG.21488.1,STRG.21488.2,STRG.21488.3,STRG.21488.5,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2452,blat.proc3825174.chain_2456,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	12	STRG.21488.4,Trinity_GG_29146_c0_g1_i11,blat.proc3825174.chain_2453,blat.proc3825174.chain_2454	4
scaffold_24	alt_acceptor	420729	420730	+	asmbl_32011	none	STRG.26330.2	1	STRG.26330.1,blat.proc3825176.chain_3297	2
scaffold_15	alt_acceptor	15189127	15189128	+	asmbl_15739	none	blat.proc3825172.chain_3535	1	blat.proc3825172.chain_3530	1
scaffold_1	retained_intron	9897278	9897370	-	asmbl_563	none	blat.proc3825148.chain_620	1	STRG.664.1,STRG.664.2,blat.proc3825148.chain_621	3
scaffold_11	alt_donor	17382933	17382934	-	asmbl_7269	none	STRG.14397.2	1	STRG.14397.1,blat.proc3825154.chain_2894,blat.proc3825154.chain_2896	3
scaffold_1	alt_donor	13129358	13129359	-	asmbl_799	none	blat.proc3825148.chain_915	1	STRG.955.1,blat.proc3825148.chain_913,blat.proc3825148.chain_914	3
scaffold_1	starts_in_intron	11001156	11001156	+	asmbl_2050	none	Trinity_GG_17739_c0_g1_i1,blat.proc3825164.chain_817	2	STRG.721.1,blat.proc3825164.chain_818	2
scaffold_23	alt_donor	8206067	8206068	+	asmbl_31767,asmbl_31768	none	STRG.26129.2,blat.proc3825176.chain_3003	2	STRG.26129.1,blat.proc3825176.chain_3002,blat.proc3825176.chain_3004	3
scaffold_10	spliced_intron	1425809	1425931	+	asmbl_2939	none	blat.proc3825170.chain_761	1	STRG.12016.2,STRG.12016.3,Trinity_GG_23995_c0_g1_i4,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_759,blat.proc3825170.chain_762,blat.proc3825170.chain_765	7
scaffold_3	alternate_exon	18930302	18938017	+	asmbl_40749,asmbl_40750,asmbl_40751,asmbl_40752	none	STRG.4067.1,STRG.4067.2,STRG.4067.3,STRG.4067.4	4	STRG.4067.5,Trinity_GG_19584_c1_g1_i1,blat.proc3825166.chain_546	3
scaffold_7	alternate_exon	1389256	1402106	-	asmbl_50721	none	blat.proc3825152.chain_1117	1	STRG.8652.2,blat.proc3825152.chain_1119,blat.proc3825152.chain_1123	3
scaffold_5	starts_in_intron	10308810	10308810	+	asmbl_45674	none	blat.proc3825166.chain_2545	1	STRG.6330.1,blat.proc3825166.chain_2543,blat.proc3825166.chain_2544	3
scaffold_21	starts_in_intron	710012	710012	-	asmbl_27355,asmbl_27356	none	STRG.23759.2,Trinity_GG_13202_c0_g1_i2,blat.proc3825160.chain_798	3	STRG.23759.1,Trinity_GG_13202_c0_g1_i5,Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793,blat.proc3825160.chain_794,blat.proc3825160.chain_795,blat.proc3825160.chain_796	7
scaffold_10	retained_intron	6757359	6757457	-	asmbl_4501	none	blat.proc3825154.chain_1107	1	STRG.12506.1,blat.proc3825154.chain_1106	2
scaffold_1	retained_intron	15303957	15304040	+	asmbl_2441	none	Trinity_GG_17981_c0_g1_i1,blat.proc3825164.chain_1287	2	STRG.1099.1,Trinity_GG_17981_c0_g1_i2,blat.proc3825164.chain_1286	3
scaffold_18	retained_intron	370096	370294	-	asmbl_19583	none	blat.proc3825158.chain_1989	1	STRG.20990.1,blat.proc3825158.chain_1985,blat.proc3825158.chain_1986,blat.proc3825158.chain_1988,blat.proc3825158.chain_1990	5
scaffold_25	alt_acceptor	4888621	4888622	+	asmbl_33544	none	STRG.27420.1,Trinity_GG_32424_c0_g1_i2,blat.proc3825178.chain_518	3	STRG.27420.2,Trinity_GG_32424_c0_g1_i1,blat.proc3825178.chain_517	3
scaffold_21	retained_intron	494987	495125	-	asmbl_27330	none	Trinity_GG_13235_c0_g1_i5,blat.proc3825160.chain_880	2	STRG.23744.1,Trinity_GG_13235_c0_g1_i2,Trinity_GG_13235_c0_g1_i6,blat.proc3825160.chain_879,blat.proc3825160.chain_882	5
scaffold_25	retained_intron	7903393	7903604	+	asmbl_33689	none	STRG.27614.1,Trinity_GG_32536_c0_g1_i1,blat.proc3825178.chain_710	3	STRG.27614.2,blat.proc3825178.chain_711	2
scaffold_11	alternate_exon	13651391	13651573	-	asmbl_7152	none	STRG.14222.1,blat.proc3825154.chain_2707	2	STRG.14222.2,blat.proc3825154.chain_2706	2
scaffold_7	retained_intron	5183050	5183286	-	asmbl_50874	none	STRG.8855.2,blat.proc3825152.chain_1306	2	STRG.8855.1,blat.proc3825152.chain_1305	2
scaffold_11	spliced_intron	13541271	13541378	+	asmbl_6060	none	STRG.14211.1,Trinity_GG_25145_c0_g1_i2,blat.proc3825170.chain_2755	3	STRG.14211.2,Trinity_GG_25145_c0_g1_i1,blat.proc3825170.chain_2754	3
scaffold_12	retained_intron	15204227	15204314	+	asmbl_8112	none	STRG.15328.1,blat.proc3825172.chain_33	2	STRG.15328.2,blat.proc3825172.chain_32	2
scaffold_25	alt_donor	337573	337574	+	asmbl_33324,asmbl_33326	none	STRG.27077.1,STRG.27077.3	2	STRG.27077.2	1
scaffold_4	starts_in_intron	12793123	12793123	+	asmbl_41757	none	blat.proc3825166.chain_1368	1	STRG.4935.1,STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365,blat.proc3825166.chain_1366,blat.proc3825166.chain_1369	6
scaffold_4	alt_acceptor	19591656	19591657	-	asmbl_43460	none	blat.proc3825150.chain_1746	1	blat.proc3825150.chain_1745	1
scaffold_25	alt_acceptor	6058590	6058591	-	asmbl_34314	none	STRG.27486.1	1	STRG.27486.2	1
scaffold_17	ends_in_intron	12364938	12364938	+	asmbl_19284	none	STRG.20775.2,blat.proc3825174.chain_1656	2	STRG.20775.1,STRG.20775.3,blat.proc3825174.chain_1657	3
scaffold_4	starts_in_intron	5032925	5032925	-	asmbl_42550	none	blat.proc3825150.chain_631	1	STRG.4399.1,STRG.4399.2,STRG.4399.3	3
scaffold_1	skipped_exon	11618948	11621286	-	asmbl_644	none	STRG.770.2,blat.proc3825148.chain_660	2	STRG.770.1,blat.proc3825148.chain_659	2
scaffold_14	retained_intron	405059	405204	+	asmbl_11747	none	STRG.16734.1,Trinity_GG_26526_c0_g1_i5,blat.proc3825172.chain_1510	3	STRG.16734.2,STRG.16734.5,STRG.16734.6,Trinity_GG_26526_c0_g1_i6,blat.proc3825172.chain_1502,blat.proc3825172.chain_1513,blat.proc3825172.chain_1516	7
scaffold_3	spliced_intron	19407196	19407473	-	asmbl_39647,asmbl_39648,asmbl_39652	none	STRG.4086.1,STRG.4086.3,STRG.4086.4,blat.proc3825150.chain_250,blat.proc3825150.chain_253	5	blat.proc3825150.chain_251	1
scaffold_26	retained_intron	9844185	9844437	+	asmbl_35278,asmbl_35279,asmbl_35282,asmbl_35283,asmbl_35284,asmbl_35286,asmbl_35287,asmbl_35288,asmbl_35290	none	STRG.28546.1,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1575,blat.proc3825178.chain_1577,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	11	STRG.28546.2,blat.proc3825178.chain_1576	2
scaffold_14	alt_donor	7286019	7286020	+	asmbl_12146	none	STRG.17167.1,blat.proc3825172.chain_1865	2	STRG.17167.2,blat.proc3825172.chain_1864	2
scaffold_28	retained_intron	7421600	7421706	-	asmbl_38400	none	blat.proc3825162.chain_2991	1	STRG.29817.1,blat.proc3825162.chain_2992	2
scaffold_3	starts_in_intron	17241987	17241987	+	asmbl_40661	none	Trinity_GG_19527_c0_g1_i1	1	STRG.3953.1	1
scaffold_28	retained_exon	3389756	3389854	+	asmbl_37481	none	STRG.29559.2	1	STRG.29559.1,STRG.29559.3	2
scaffold_17	alt_donor	8421766	8421767	+	asmbl_18990	none	STRG.20462.2,Trinity_GG_28520_c0_g1_i1,blat.proc3825174.chain_1306	3	STRG.20462.1,Trinity_GG_28520_c0_g1_i2,blat.proc3825174.chain_1305	3
scaffold_8	ends_in_intron	14570141	14570141	+	asmbl_53378	none	Trinity_GG_23185_c3_g1_i1,blat.proc3825168.chain_3109	2	STRG.10543.1,STRG.10543.2,STRG.10543.3,blat.proc3825168.chain_3106	4
scaffold_25	alternate_exon	6525826	6525866	-	asmbl_34366	none	blat.proc3825162.chain_926	1	blat.proc3825162.chain_927	1
scaffold_4	starts_in_intron	19600771	19600771	-	asmbl_43464	none	Trinity_GG_3118_c0_g1_i1,blat.proc3825150.chain_1738	2	STRG.5546.2	1
scaffold_10	alternate_exon	2717967	2718192	+	asmbl_2999	none	STRG.12090.1,blat.proc3825170.chain_795	2	blat.proc3825170.chain_796	1
scaffold_6	starts_in_intron	8581211	8581211	+	asmbl_47155,asmbl_47156	none	STRG.7738.4,blat.proc3825168.chain_176	2	STRG.7738.2,STRG.7738.3,blat.proc3825168.chain_179,blat.proc3825168.chain_181	4
scaffold_9	alt_donor	2400474	2400475	-	asmbl_54868	none	STRG.10884.1	1	STRG.10884.2	1
scaffold_10	alternate_exon	12966537	12966831	+	asmbl_3568	none	STRG.12892.3,Trinity_GG_24410_c2_g1_i1,blat.proc3825170.chain_1488	3	STRG.12892.2,blat.proc3825170.chain_1486	2
scaffold_25	alt_acceptor	5158232	5158233	-	asmbl_34249	none	STRG.27443.3	1	STRG.27443.1,STRG.27443.2,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809	5
scaffold_4	retained_intron	4691873	4692128	+	asmbl_41299,asmbl_41302	none	blat.proc3825166.chain_817,blat.proc3825166.chain_820	2	STRG.4379.1,blat.proc3825166.chain_813,blat.proc3825166.chain_814,blat.proc3825166.chain_816,blat.proc3825166.chain_818,blat.proc3825166.chain_819	6
scaffold_18	retained_intron	8399580	8401325	+	asmbl_20835,asmbl_20838	none	STRG.21513.4,blat.proc3825174.chain_2583	2	STRG.21513.2,STRG.21513.3,STRG.21513.5,blat.proc3825174.chain_2581	4
scaffold_11	alternate_exon	4673294	4676947	-	asmbl_6616	none	blat.proc3825154.chain_2158	1	Trinity_GG_7606_c0_g2_i2,blat.proc3825154.chain_2156	2
scaffold_26	spliced_intron	3563207	3563305	+	asmbl_34789,asmbl_34791,asmbl_34792,asmbl_34794	none	STRG.28036.1,STRG.28036.2,STRG.28036.4,STRG.28036.5,blat.proc3825178.chain_1077	5	Trinity_GG_32778_c0_g1_i5,blat.proc3825178.chain_1076	2
scaffold_10	spliced_intron	3129132	3129956	-	asmbl_4168	none	STRG.12138.3	1	STRG.12138.2,Trinity_GG_6767_c0_g1_i1,Trinity_GG_6767_c0_g1_i4,blat.proc3825154.chain_699,blat.proc3825154.chain_700	5
scaffold_6	alt_acceptor	12621325	12621326	-	asmbl_48832	none	STRG.8019.1,Trinity_GG_4555_c0_g1_i3,blat.proc3825152.chain_408	3	Trinity_GG_4555_c0_g1_i2,blat.proc3825152.chain_410	2
scaffold_5	alt_acceptor	7409209	7409210	-	asmbl_44175,asmbl_44176	none	STRG.6142.1,STRG.6142.2	2	STRG.6142.3	1
scaffold_23	alt_donor	10198162	10198163	-	asmbl_31138	none	blat.proc3825160.chain_3339	1	STRG.26231.1,STRG.26231.2,STRG.26231.3,blat.proc3825160.chain_3340	4
scaffold_5	alt_acceptor	3638608	3638609	+	asmbl_45234	none	STRG.5839.2,blat.proc3825166.chain_2058	2	STRG.5839.1,blat.proc3825166.chain_2057	2
scaffold_13	starts_in_intron	6046580	6046580	-	asmbl_9767	none	STRG.15915.3,blat.proc3825156.chain_779	2	STRG.15915.1,STRG.15915.2,STRG.15915.4,STRG.15915.5,blat.proc3825156.chain_778,blat.proc3825156.chain_780,blat.proc3825156.chain_782,blat.proc3825156.chain_784	8
scaffold_21	alternate_exon	2484569	2484617	-	asmbl_27465	none	STRG.23873.3	1	STRG.23873.2	1
scaffold_16	alt_donor	7218801	7218802	-	asmbl_17173,asmbl_17176	none	STRG.19399.1,STRG.19399.2	2	STRG.19399.3	1
scaffold_5	alternate_exon	6566767	6567768	+	asmbl_45432	none	STRG.6054.3,Trinity_GG_20591_c1_g1_i1,blat.proc3825166.chain_2220	3	blat.proc3825166.chain_2218	1
scaffold_5	skipped_exon	2532328	2533149	-	asmbl_43890	none	STRG.5778.2	1	STRG.5778.1,blat.proc3825150.chain_1992	2
scaffold_8	retained_intron	8180856	8181693	+	asmbl_53008	none	blat.proc3825168.chain_2699	1	STRG.10103.1,STRG.10103.2,STRG.10103.3,STRG.10103.4,blat.proc3825168.chain_2696	5
scaffold_22	ends_in_intron	10773214	10773214	-	asmbl_29626	none	Trinity_GG_14227_c0_g1_i3	1	STRG.25418.1	1
scaffold_23	retained_intron	3510274	3510858	-	asmbl_30801	none	STRG.25774.2,Trinity_GG_14435_c0_g1_i1,blat.proc3825160.chain_2973,blat.proc3825160.chain_2978	4	STRG.25774.1,blat.proc3825160.chain_2975,blat.proc3825160.chain_2979	3
scaffold_4	starts_in_intron	16646628	16646628	+	asmbl_41988	none	Trinity_GG_20229_c0_g1_i3	1	STRG.5243.1,STRG.5243.2	2
scaffold_8	spliced_intron	6160729	6160833	-	asmbl_51861,asmbl_51862,asmbl_51867,asmbl_51868,asmbl_51869	none	STRG.10030.1,STRG.10030.3,blat.proc3825152.chain_2271,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	7	STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2272	3
scaffold_23	retained_intron	8812037	8812206	+	asmbl_31784	none	blat.proc3825176.chain_3123	1	STRG.26148.3	1
scaffold_16	ends_in_intron	8095610	8095610	+	asmbl_16381	none	Trinity_GG_27939_c0_g1_i2,blat.proc3825174.chain_322	2	STRG.19453.1,STRG.19453.2,Trinity_GG_27939_c0_g1_i1,Trinity_GG_27939_c0_g1_i3,blat.proc3825174.chain_320,blat.proc3825174.chain_321	6
scaffold_14	retained_exon	14147748	14147811	+	asmbl_12528	none	STRG.17687.3	1	STRG.17687.1	1
scaffold_27	starts_in_intron	316725	316725	-	asmbl_36657,asmbl_36662	none	STRG.28557.1,STRG.28557.2	2	STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725	4
scaffold_1	alternate_exon	8761959	8762005	-	asmbl_499	none	STRG.580.2	1	STRG.580.1,blat.proc3825148.chain_557	2
scaffold_8	skipped_exon	14212489	14213428	-	asmbl_52303	none	STRG.10521.1	1	STRG.10521.2,blat.proc3825152.chain_2755	2
scaffold_20	spliced_intron	11948483	11948717	-	asmbl_26207,asmbl_26209	none	blat.proc3825160.chain_679,blat.proc3825160.chain_682	2	STRG.23700.3,blat.proc3825160.chain_680	2
scaffold_7	alt_acceptor	1513418	1513419	+	asmbl_49611	none	STRG.8645.1,Trinity_GG_22057_c0_g1_i1,blat.proc3825168.chain_1132	3	STRG.8645.2	1
scaffold_21	ends_in_intron	10332710	10332710	-	asmbl_28038	none	blat.proc3825160.chain_1709	1	STRG.24501.3	1
scaffold_27	starts_in_intron	2786027	2786027	+	asmbl_36108	none	blat.proc3825178.chain_1827	1	STRG.28759.1,blat.proc3825178.chain_1829,blat.proc3825178.chain_1830	3
scaffold_10	starts_in_intron	11595983	11595983	+	asmbl_3482	none	Trinity_GG_24375_c0_g1_i1,blat.proc3825170.chain_1407	2	STRG.12815.1,STRG.12815.3	2
scaffold_14	alt_donor	921286	921287	+	asmbl_11780,asmbl_11782	none	STRG.16761.1,STRG.16761.2,blat.proc3825172.chain_1522	3	STRG.16761.3	1
scaffold_19	alt_acceptor	12232503	12232504	+	asmbl_21766	none	STRG.22547.1	1	STRG.22547.2,Trinity_GG_29789_c0_g1_i1,blat.proc3825174.chain_3578	3
scaffold_4	retained_intron	6300842	6302966	+	asmbl_41394,asmbl_41395	none	blat.proc3825166.chain_919,blat.proc3825166.chain_921	2	STRG.4503.1,STRG.4503.2,Trinity_GG_19783_c0_g1_i1,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_920,blat.proc3825166.chain_922	8
scaffold_23	starts_in_intron	4229523	4229523	-	asmbl_30847,asmbl_30850,asmbl_30853	none	STRG.25839.1,STRG.25839.5,blat.proc3825160.chain_2987,blat.proc3825160.chain_2989	4	STRG.25839.2	1
scaffold_9	starts_in_intron	17607580	17607580	-	asmbl_55663	none	blat.proc3825154.chain_292	1	STRG.11851.1,STRG.11851.2,blat.proc3825154.chain_293,blat.proc3825154.chain_294,blat.proc3825154.chain_295,blat.proc3825154.chain_296,blat.proc3825154.chain_297	7
scaffold_6	alternate_exon	17644974	17645565	-	asmbl_49195	none	STRG.8458.2	1	STRG.8458.3,Trinity_GG_4817_c0_g1_i1,blat.proc3825152.chain_885	3
scaffold_8	alternate_exon	14536961	14537063	+	asmbl_53375	none	STRG.10535.1,blat.proc3825168.chain_3049	2	STRG.10535.2	1
scaffold_12	alternate_exon	16315084	16315382	-	asmbl_9118	none	STRG.15386.1	1	blat.proc3825156.chain_239,blat.proc3825156.chain_240,blat.proc3825156.chain_241	3
scaffold_23	spliced_intron	6854401	6855600	-	asmbl_30982,asmbl_30983	none	STRG.26018.2,STRG.26018.3	2	STRG.26018.1	1
scaffold_11	starts_in_intron	11070186	11070186	-	asmbl_7016	none	blat.proc3825154.chain_2627	1	STRG.14073.1,blat.proc3825154.chain_2628	2
scaffold_1	starts_in_intron	3271082	3271082	-	asmbl_141,asmbl_142,asmbl_143	none	STRG.204.4,blat.proc3825148.chain_202,blat.proc3825148.chain_204	3	STRG.204.1,STRG.204.2,STRG.204.3,blat.proc3825148.chain_203	4
scaffold_7	spliced_intron	4934589	4935841	+	asmbl_49767,asmbl_49772,asmbl_49773,asmbl_49774,asmbl_49775,asmbl_49776,asmbl_49777,asmbl_49778,asmbl_49779	none	STRG.8852.1,STRG.8852.2,STRG.8852.3,STRG.8852.4,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1351,blat.proc3825168.chain_1352	11	STRG.8852.5,blat.proc3825168.chain_1350	2
scaffold_26	ends_in_intron	5893741	5893741	-	asmbl_35644	none	blat.proc3825162.chain_1468	1	STRG.28301.1,STRG.28301.2,STRG.28301.3,blat.proc3825162.chain_1469,blat.proc3825162.chain_1472,blat.proc3825162.chain_1473	6
scaffold_10	retained_intron	4058608	4058757	-	asmbl_4251,asmbl_4253	none	STRG.12246.6,STRG.12246.7,blat.proc3825154.chain_823	3	STRG.12246.1,STRG.12246.4,blat.proc3825154.chain_820,blat.proc3825154.chain_822	4
scaffold_9	alternate_exon	6920093	6920278	-	asmbl_55102	none	blat.proc3825152.chain_3452	1	blat.proc3825152.chain_3450	1
scaffold_13	retained_intron	3371276	3371709	+	asmbl_10686	none	Trinity_GG_25884_c0_g1_i2,blat.proc3825172.chain_347	2	STRG.15652.1,blat.proc3825172.chain_348	2
scaffold_17	spliced_intron	10240432	10240572	-	asmbl_18237	none	STRG.20642.2,Trinity_GG_11616_c0_g1_i2,blat.proc3825158.chain_1674	3	STRG.20642.1,Trinity_GG_11616_c0_g1_i1,blat.proc3825158.chain_1673	3
scaffold_13	starts_in_intron	11271339	11271339	-	asmbl_10075	none	blat.proc3825156.chain_1100	1	STRG.16288.1,STRG.16288.2,blat.proc3825156.chain_1099	3
scaffold_23	alternate_exon	7279357	7281828	-	asmbl_31024	none	blat.proc3825160.chain_3145	1	STRG.26052.4,Trinity_GG_14537_c0_g1_i7	2
scaffold_12	ends_in_intron	8557645	8557645	+	asmbl_7823	none	blat.proc3825170.chain_3460	1	STRG.14879.1,Trinity_GG_25550_c0_g1_i1,blat.proc3825170.chain_3459,blat.proc3825170.chain_3461	4
scaffold_15	spliced_intron	14650043	14650231	+	asmbl_15691	none	STRG.18879.1,Trinity_GG_27664_c0_g1_i3	2	Trinity_GG_27664_c0_g1_i1	1
scaffold_26	retained_intron	2261353	2261420	+	asmbl_34740	none	STRG.27956.1	1	STRG.27956.2	1
scaffold_8	retained_exon	11270088	11270215	-	asmbl_52141	none	STRG.10337.1,blat.proc3825152.chain_2577	2	STRG.10337.2,blat.proc3825152.chain_2579	2
scaffold_11	spliced_intron	9829435	9831678	+	asmbl_5909	none	STRG.14008.2,blat.proc3825170.chain_2556	2	STRG.14008.1,Trinity_GG_25038_c0_g1_i4,Trinity_GG_25038_c0_g1_i6,blat.proc3825170.chain_2557,blat.proc3825170.chain_2560,blat.proc3825170.chain_2561	6
scaffold_1	starts_in_intron	1992732	1992732	+	asmbl_1525	none	Trinity_GG_17420_c2_g1_i1,blat.proc3825164.chain_265	2	STRG.128.1,blat.proc3825164.chain_261,blat.proc3825164.chain_262	3
scaffold_16	spliced_intron	4062380	4062655	-	asmbl_17045,asmbl_17046,asmbl_17048	none	STRG.19223.1,STRG.19223.2,blat.proc3825158.chain_352,blat.proc3825158.chain_354	4	Trinity_GG_10794_c0_g1_i1,blat.proc3825158.chain_353	2
scaffold_14	retained_exon	14386295	14386355	+	asmbl_12545	none	STRG.17700.2	1	STRG.17700.1	1
scaffold_3	alternate_exon	6184449	6196909	-	asmbl_38908,asmbl_38910	none	STRG.3266.1,STRG.3266.2,blat.proc3825148.chain_3119,blat.proc3825148.chain_3125	4	STRG.3266.3,blat.proc3825148.chain_3118	2
scaffold_6	retained_intron	187725	187786	+	asmbl_46638	none	STRG.7087.1	1	blat.proc3825166.chain_3308	1
scaffold_11	starts_in_intron	8139567	8139567	-	asmbl_6843	none	Trinity_GG_7712_c3_g1_i1,blat.proc3825154.chain_2345	2	Trinity_GG_7712_c2_g1_i1,blat.proc3825154.chain_2344	2
scaffold_21	alt_donor	994309	994310	-	asmbl_27368	none	STRG.23784.1,Trinity_GG_13254_c0_g1_i2,Trinity_GG_13254_c0_g1_i3,blat.proc3825160.chain_913,blat.proc3825160.chain_914	5	STRG.23784.2	1
scaffold_26	starts_in_intron	6704209	6704209	-	asmbl_35699	none	blat.proc3825162.chain_1605	1	STRG.28371.1,STRG.28371.2,STRG.28371.3,blat.proc3825162.chain_1601,blat.proc3825162.chain_1602,blat.proc3825162.chain_1604	6
scaffold_1	alternate_exon	14076352	14082563	+	asmbl_2331	none	STRG.1003.2,Trinity_GG_17903_c1_g1_i1,blat.proc3825164.chain_1140	3	STRG.1003.1,Trinity_GG_17903_c0_g1_i3,Trinity_GG_17903_c0_g1_i4,blat.proc3825164.chain_1138,blat.proc3825164.chain_1139	5
scaffold_14	alt_acceptor	561020	561021	+	asmbl_11759	none	STRG.16738.1,Trinity_GG_26523_c0_g1_i3,Trinity_GG_26523_c1_g1_i1,blat.proc3825172.chain_1496,blat.proc3825172.chain_1498	5	STRG.16738.2	1
scaffold_5	retained_intron	5061929	5062040	+	asmbl_45338,asmbl_45339,asmbl_45341	none	STRG.5963.1,STRG.5963.4,Trinity_GG_20579_c0_g1_i2,Trinity_GG_20579_c0_g1_i3,blat.proc3825166.chain_2190,blat.proc3825166.chain_2191	6	STRG.5963.2,STRG.5963.3,blat.proc3825166.chain_2192	3
scaffold_8	skipped_exon	16385407	16386865	+	asmbl_53455	none	STRG.10620.3	1	STRG.10620.1,STRG.10620.2,Trinity_GG_23226_c0_g1_i2,Trinity_GG_23226_c0_g1_i3,Trinity_GG_23226_c0_g1_i4,blat.proc3825168.chain_3195,blat.proc3825168.chain_3196,blat.proc3825168.chain_3197	8
scaffold_8	alternate_exon	17813120	17818769	+	asmbl_53505	none	STRG.10693.2,Trinity_GG_23223_c0_g1_i5,blat.proc3825168.chain_3183	3	STRG.10693.3,Trinity_GG_23223_c0_g1_i1,blat.proc3825168.chain_3179	3
scaffold_16	alt_donor	7115697	7115698	-	asmbl_17163	none	STRG.19389.2	1	STRG.19389.3	1
scaffold_13	starts_in_intron	11946236	11946236	-	asmbl_10112	none	STRG.16330.3	1	STRG.16330.1,STRG.16330.2,Trinity_GG_9149_c0_g1_i3,blat.proc3825156.chain_1197,blat.proc3825156.chain_1198	5
scaffold_6	retained_exon	12900357	12900510	+	asmbl_47442,asmbl_47444	none	STRG.8048.1,STRG.8048.3,blat.proc3825168.chain_459	3	STRG.8048.2	1
scaffold_3	alternate_exon	7715273	7715582	-	asmbl_38976	none	STRG.3368.1,Trinity_GG_1797_c2_g1_i1,blat.proc3825148.chain_3206	3	blat.proc3825148.chain_3197,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3200,blat.proc3825148.chain_3201,blat.proc3825148.chain_3202,blat.proc3825148.chain_3203,blat.proc3825148.chain_3204	8
scaffold_17	alternate_exon	12199347	12199478	+	asmbl_19280	none	blat.proc3825174.chain_1664	1	STRG.20759.3,blat.proc3825174.chain_1661	2
scaffold_3	starts_in_intron	3252361	3252361	+	asmbl_39944	none	blat.proc3825164.chain_3387	1	STRG.3072.2,STRG.3072.6	2
scaffold_21	alternate_exon	5155690	5155735	-	asmbl_27620	none	STRG.24050.2	1	STRG.24050.1,Trinity_GG_13420_c0_g1_i1,blat.proc3825160.chain_1196	3
scaffold_1	retained_intron	18487756	18487955	-	asmbl_1110	none	Trinity_GG_709_c0_g1_i3,blat.proc3825148.chain_1317	2	STRG.1298.2,STRG.1298.3,STRG.1298.4,STRG.1298.6,STRG.1298.7,STRG.1298.8,blat.proc3825148.chain_1318,blat.proc3825148.chain_1319,blat.proc3825148.chain_1320,blat.proc3825148.chain_1321,blat.proc3825148.chain_1322	11
scaffold_5	alt_donor	9072759	9072760	+	asmbl_45598	none	blat.proc3825166.chain_2463	1	STRG.6245.2,blat.proc3825166.chain_2461	2
scaffold_6	spliced_intron	7516477	7517141	-	asmbl_48500,asmbl_48502	none	STRG.7655.4,blat.proc3825152.chain_11	2	STRG.7655.2,Trinity_GG_4298_c0_g2_i1,blat.proc3825152.chain_16	3
scaffold_14	starts_in_intron	13907807	13907807	+	asmbl_12518	none	Trinity_GG_27021_c0_g1_i3,blat.proc3825172.chain_2388	2	STRG.17671.2,blat.proc3825172.chain_2386,blat.proc3825172.chain_2389	3
scaffold_23	spliced_intron	2163935	2164106	-	asmbl_30700	none	STRG.25690.1	1	STRG.25690.2	1
scaffold_6	spliced_intron	13229094	13229383	+	asmbl_47504,asmbl_47506,asmbl_47508	none	STRG.8084.4,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_575	4	STRG.8084.2,STRG.8084.3,STRG.8084.5,STRG.8084.8,Trinity_GG_21752_c0_g1_i9,blat.proc3825168.chain_570,blat.proc3825168.chain_578	7
scaffold_4	retained_intron	19674267	19674337	-	asmbl_43485	none	STRG.5558.2	1	STRG.5558.1	1
scaffold_5	ends_in_intron	4855144	4855144	-	asmbl_44019	none	blat.proc3825150.chain_2146	1	STRG.5945.1,STRG.5945.2,blat.proc3825150.chain_2144,blat.proc3825150.chain_2147	4
scaffold_18	alternate_exon	9788920	9788962	+	asmbl_20892	none	blat.proc3825174.chain_2556	1	STRG.21586.3,blat.proc3825174.chain_2555	2
scaffold_25	spliced_intron	978574	978714	+	asmbl_33359	none	blat.proc3825178.chain_248	1	Trinity_GG_32255_c0_g1_i1,blat.proc3825178.chain_247	2
scaffold_20	retained_intron	5923146	5923230	-	asmbl_25789,asmbl_25792,asmbl_25793	none	STRG.23199.1,blat.proc3825160.chain_279,blat.proc3825160.chain_280	3	STRG.23199.2,STRG.23199.3,STRG.23199.4,blat.proc3825160.chain_276,blat.proc3825160.chain_278,blat.proc3825160.chain_281	6
scaffold_21	retained_intron	7367393	7367476	-	asmbl_27802,asmbl_27803	none	blat.proc3825160.chain_1407,blat.proc3825160.chain_1408	2	STRG.24259.1,blat.proc3825160.chain_1410	2
scaffold_24	spliced_intron	1078652	1078823	+	asmbl_32067	none	STRG.26383.3,blat.proc3825176.chain_3365	2	STRG.26383.2,blat.proc3825176.chain_3363	2
scaffold_16	alt_acceptor	6095204	6095205	-	asmbl_17137,asmbl_17141	none	STRG.19342.2,blat.proc3825158.chain_498	2	STRG.19342.1,blat.proc3825158.chain_499,blat.proc3825158.chain_500,blat.proc3825158.chain_501,blat.proc3825158.chain_502	5
scaffold_13	alternate_exon	16152094	16152105	-	asmbl_10267	none	blat.proc3825156.chain_1430	1	STRG.16663.2	1
scaffold_23	retained_exon	2207677	2207889	-	asmbl_30713	none	STRG.25698.5	1	STRG.25698.3,STRG.25698.6	2
scaffold_8	spliced_intron	16502745	16503358	-	asmbl_52405,asmbl_52419,asmbl_52420	none	STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	5	Trinity_GG_5934_c0_g1_i21,blat.proc3825152.chain_2928,blat.proc3825152.chain_2938	3
scaffold_8	alternate_exon	4080958	4080998	+	asmbl_52812	none	blat.proc3825168.chain_2484	1	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2480,blat.proc3825168.chain_2481	4
scaffold_4	alt_donor	4433714	4433715	+	asmbl_41270	none	STRG.4342.4	1	STRG.4342.2,STRG.4342.3,blat.proc3825166.chain_792	3
scaffold_20	skipped_exon	12074836	12076942	-	asmbl_26219	none	STRG.23706.2	1	STRG.23706.1,blat.proc3825160.chain_685,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_688	5
scaffold_23	spliced_intron	4449320	4449423	-	asmbl_30866,asmbl_30869	none	STRG.25862.1,STRG.25862.2,Trinity_GG_14447_c0_g1_i2,blat.proc3825160.chain_3005	4	STRG.25862.3,STRG.25862.4,STRG.25862.5,Trinity_GG_14447_c0_g1_i1,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3002,blat.proc3825160.chain_3004	7
scaffold_16	alt_acceptor	4149780	4149781	+	asmbl_16179,asmbl_16180	none	STRG.19230.2,STRG.19230.3	2	STRG.19230.1,Trinity_GG_27835_c0_g1_i1,blat.proc3825174.chain_113	3
scaffold_27	starts_in_intron	7398500	7398500	-	asmbl_37104	none	blat.proc3825162.chain_2323	1	STRG.29095.2	1
scaffold_15	alt_donor	2563217	2563218	+	asmbl_15063,asmbl_15066	none	STRG.18045.1,STRG.18045.3	2	STRG.18045.2	1
scaffold_5	retained_intron	18574353	18574611	+	asmbl_46276	none	blat.proc3825166.chain_3217	1	STRG.6990.1,Trinity_GG_21161_c0_g1_i3,blat.proc3825166.chain_3215	3
scaffold_18	alternate_exon	8593261	8593474	+	asmbl_20846	none	STRG.21525.1,blat.proc3825174.chain_2586	2	STRG.21525.2	1
scaffold_13	starts_in_intron	5538783	5538783	+	asmbl_10869	none	blat.proc3825172.chain_595	1	STRG.15858.1	1
scaffold_3	starts_in_intron	6167531	6167531	-	asmbl_38905	none	Trinity_GG_1748_c1_g1_i5,blat.proc3825148.chain_3077	2	STRG.3284.1,STRG.3284.2,STRG.3284.3,blat.proc3825148.chain_3074,blat.proc3825148.chain_3075,blat.proc3825148.chain_3076	6
scaffold_21	alt_acceptor	9925390	9925391	-	asmbl_27989,asmbl_27992,asmbl_27993	none	STRG.24461.1,STRG.24461.3,STRG.24461.5,blat.proc3825160.chain_1641	4	STRG.24461.4	1
scaffold_5	alt_donor	11992074	11992075	-	asmbl_44427,asmbl_44433	none	STRG.6453.4,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	3	STRG.6453.8,STRG.6453.9	2
scaffold_18	alt_acceptor	4442806	4442807	+	asmbl_20520	none	STRG.21236.2,blat.proc3825174.chain_2153	2	STRG.21236.1,blat.proc3825174.chain_2151	2
scaffold_13	skipped_exon	5919688	5920404	-	asmbl_9749	none	STRG.15907.2,Trinity_GG_8926_c0_g1_i3,blat.proc3825156.chain_751	3	STRG.15907.1,Trinity_GG_8926_c0_g1_i2,blat.proc3825156.chain_753	3
scaffold_8	alt_donor	18089675	18089676	+	asmbl_53524	none	STRG.10711.2,blat.proc3825168.chain_3140	2	blat.proc3825168.chain_3141	1
scaffold_20	spliced_intron	10660786	10661477	+	asmbl_26976	none	STRG.23599.2,Trinity_GG_30362_c0_g1_i1,blat.proc3825176.chain_774	3	STRG.23599.1,Trinity_GG_30362_c0_g1_i3,blat.proc3825176.chain_773	3
scaffold_1	starts_in_intron	3630081	3630081	+	asmbl_1619	none	Trinity_GG_17478_c0_g1_i1,blat.proc3825164.chain_347	2	STRG.230.1,blat.proc3825164.chain_346	2
scaffold_17	alternate_exon	682848	683184	-	asmbl_17645	none	blat.proc3825158.chain_962	1	STRG.19921.1,blat.proc3825158.chain_959	2
scaffold_15	ends_in_intron	5457293	5457293	-	asmbl_14212	none	Trinity_GG_10273_c0_g1_i3,blat.proc3825156.chain_3108	2	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	5
scaffold_4	spliced_intron	19605273	19605368	-	asmbl_43471	none	STRG.5550.4	1	STRG.5550.3	1
scaffold_7	alternate_exon	11152460	11152604	+	asmbl_50157	none	STRG.9261.3,Trinity_GG_22446_c0_g1_i2,blat.proc3825168.chain_1757	3	STRG.9261.1,Trinity_GG_22446_c0_g1_i1,blat.proc3825168.chain_1756	3
scaffold_7	alternate_exon	4047399	4047530	-	asmbl_50850	none	STRG.8803.1	1	STRG.8803.2	1
scaffold_19	alt_donor	8731800	8731801	-	asmbl_22305	none	STRG.22321.1,blat.proc3825158.chain_3015	2	STRG.22321.2,blat.proc3825158.chain_3016	2
scaffold_1150	alt_donor	1342	1343	+	asmbl_7414	none	STRG.30556.2	1	STRG.30556.1,blat.proc3825178.chain_3564	2
scaffold_26	starts_in_intron	4324740	4324740	-	asmbl_35549	none	blat.proc3825162.chain_1350	1	STRG.28149.1,STRG.28149.2,STRG.28149.3,STRG.28149.4,STRG.28149.5	5
scaffold_1	retained_intron	12683507	12683640	+	asmbl_2247	none	blat.proc3825164.chain_1037	1	STRG.892.2	1
scaffold_25	starts_in_intron	8179623	8179623	-	asmbl_34425	none	blat.proc3825162.chain_1018	1	STRG.27654.1,blat.proc3825162.chain_1017	2
scaffold_28	spliced_intron	303659	303696	+	asmbl_37274,asmbl_37276	none	STRG.29264.1,blat.proc3825178.chain_2506,blat.proc3825178.chain_2509	3	Trinity_GG_33561_c0_g1_i3,blat.proc3825178.chain_2507,blat.proc3825178.chain_2508	3
scaffold_18	starts_in_intron	8914228	8914228	-	asmbl_20042,asmbl_20047	none	STRG.21558.7,STRG.21558.9	2	STRG.21558.1,STRG.21558.3,STRG.21558.4,STRG.21558.6,blat.proc3825158.chain_2447,blat.proc3825158.chain_2449	6
scaffold_3	retained_intron	10628322	10628697	+	asmbl_40280,asmbl_40281,asmbl_40288	none	blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3688	3	STRG.3513.5,STRG.3513.6,blat.proc3825164.chain_3689	3
scaffold_10	alt_acceptor	6075361	6075362	-	asmbl_4432	none	blat.proc3825154.chain_1034	1	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033	7
scaffold_10	ends_in_intron	336945	336945	-	asmbl_3936,asmbl_3937	none	STRG.11918.4,Trinity_GG_6626_c0_g1_i4,blat.proc3825154.chain_441	3	STRG.11918.1,STRG.11918.2,STRG.11918.3,blat.proc3825154.chain_442,blat.proc3825154.chain_443,blat.proc3825154.chain_444	6
scaffold_3	ends_in_intron	14326512	14326512	-	asmbl_39361	none	blat.proc3825148.chain_3630	1	STRG.3773.1,blat.proc3825148.chain_3628	2
scaffold_26	starts_in_intron	9799876	9799876	+	asmbl_35271	none	Trinity_GG_33088_c0_g1_i1,blat.proc3825178.chain_1644	2	STRG.28517.1,Trinity_GG_33088_c0_g1_i2,blat.proc3825178.chain_1645	3
scaffold_5	ends_in_intron	1250447	1250447	-	asmbl_43844	none	Trinity_GG_3222_c0_g1_i5,Trinity_GG_3222_c0_g1_i6,blat.proc3825150.chain_1928,blat.proc3825150.chain_1930	4	STRG.5688.1,blat.proc3825150.chain_1929,blat.proc3825150.chain_1933	3
scaffold_4	alt_acceptor	12535358	12535359	-	asmbl_42920	none	STRG.4889.1	1	STRG.4889.2,blat.proc3825150.chain_1076	2
scaffold_8	spliced_intron	4287919	4288179	+	asmbl_52828	none	STRG.9909.2	1	STRG.9909.1,Trinity_GG_22831_c0_g2_i1,blat.proc3825168.chain_2462,blat.proc3825168.chain_2463	4
scaffold_7	alt_acceptor	3955229	3955230	-	asmbl_50839	none	blat.proc3825152.chain_1236	1	STRG.8794.1,STRG.8794.2,blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1228,blat.proc3825152.chain_1230,blat.proc3825152.chain_1231,blat.proc3825152.chain_1232,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235	10
scaffold_13	alternate_exon	5192199	5192225	-	asmbl_9680	none	STRG.15820.2	1	STRG.15820.1,blat.proc3825156.chain_683	2
scaffold_2	starts_in_intron	4580991	4580991	+	asmbl_24364	none	Trinity_GG_18341_c0_g1_i2,blat.proc3825164.chain_1973	2	STRG.1886.1,STRG.1886.2,STRG.1886.3,blat.proc3825164.chain_1972	4
scaffold_1	starts_in_intron	12776905	12776905	+	asmbl_2254	none	Trinity_GG_17874_c0_g1_i2,blat.proc3825164.chain_1088	2	STRG.898.1,blat.proc3825164.chain_1086,blat.proc3825164.chain_1087	3
scaffold_15	starts_in_intron	11557183	11557183	-	asmbl_14521	none	STRG.18614.1	1	STRG.18614.2,blat.proc3825156.chain_3486	2
scaffold_7	alt_acceptor	13960866	13960867	+	asmbl_50390,asmbl_50392	none	STRG.9495.1,STRG.9495.2,Trinity_GG_22592_c0_g1_i1,blat.proc3825168.chain_2025	4	blat.proc3825168.chain_2027	1
scaffold_19	retained_intron	13173213	13173287	+	asmbl_21867,asmbl_21868	none	blat.proc3825174.chain_3603,blat.proc3825174.chain_3604	2	STRG.22641.1,blat.proc3825174.chain_3605	2
scaffold_14	retained_intron	8755233	8755448	-	asmbl_13344,asmbl_13346	none	STRG.17312.1,STRG.17312.2	2	blat.proc3825156.chain_2094	1
scaffold_5	alternate_exon	9072334	9072465	+	asmbl_45595	none	STRG.6245.1,blat.proc3825166.chain_2462	2	STRG.6245.2,blat.proc3825166.chain_2461,blat.proc3825166.chain_2463	3
scaffold_8	alternate_exon	15684989	15685979	-	asmbl_52337	none	STRG.10571.2,Trinity_GG_5873_c0_g1_i2,blat.proc3825152.chain_2800	3	STRG.10571.1,Trinity_GG_5873_c0_g1_i1,blat.proc3825152.chain_2799	3
scaffold_5	ends_in_intron	4517325	4517325	+	asmbl_45269	none	blat.proc3825166.chain_2101	1	STRG.5904.1,blat.proc3825166.chain_2102	2
scaffold_16	alt_acceptor	315143	315144	-	asmbl_16851,asmbl_16852,asmbl_16853	none	STRG.19022.2,STRG.19022.3,STRG.19022.4,blat.proc3825158.chain_155	4	STRG.19022.1,blat.proc3825158.chain_156	2
scaffold_13	spliced_intron	14716696	14716771	+	asmbl_11469	none	STRG.16522.1	1	blat.proc3825172.chain_1295	1
scaffold_2	retained_intron	13330650	13331324	+	asmbl_24833,asmbl_24834	none	STRG.2344.1,STRG.2344.5,blat.proc3825164.chain_2555	3	STRG.2344.2,STRG.2344.3,blat.proc3825164.chain_2553,blat.proc3825164.chain_2554	4
scaffold_5	retained_intron	10853174	10853266	+	asmbl_45703	none	blat.proc3825166.chain_2523	1	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	4
scaffold_1	starts_in_intron	16731916	16731916	+	asmbl_2503	none	blat.proc3825164.chain_1255	1	STRG.1176.1,blat.proc3825164.chain_1253	2
scaffold_10	spliced_intron	8330959	8331706	-	asmbl_4577,asmbl_4579,asmbl_4580,asmbl_4583	none	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1187,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190,blat.proc3825154.chain_1192	6	blat.proc3825154.chain_1182	1
scaffold_28	retained_intron	5391084	5391169	+	asmbl_37584,asmbl_37589	none	STRG.29687.4,Trinity_GG_33768_c0_g1_i8,blat.proc3825178.chain_2867,blat.proc3825178.chain_2870	4	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,blat.proc3825178.chain_2869	4
scaffold_6	alt_donor	12552116	12552117	-	asmbl_48826,asmbl_48828	none	STRG.8017.2,blat.proc3825152.chain_421	2	STRG.8017.3,blat.proc3825152.chain_423	2
scaffold_15	spliced_intron	5144744	5144821	+	asmbl_15191,asmbl_15193	none	STRG.18222.1,blat.proc3825172.chain_2886,blat.proc3825172.chain_2887	3	blat.proc3825172.chain_2885	1
scaffold_2	alt_donor	14228597	14228598	-	asmbl_23587	none	STRG.2420.1	1	blat.proc3825148.chain_2409	1
scaffold_11	alt_donor	6714867	6714868	-	asmbl_6736,asmbl_6740,asmbl_6741	none	STRG.13716.5,STRG.13716.6,blat.proc3825154.chain_2286	3	STRG.13716.1,STRG.13716.2,STRG.13716.4,Trinity_GG_7683_c0_g1_i2,blat.proc3825154.chain_2287,blat.proc3825154.chain_2288	6
scaffold_21	alternate_exon	7497236	7497277	-	asmbl_27828	none	STRG.24281.2	1	STRG.24281.1,blat.proc3825160.chain_1415	2
scaffold_7	spliced_intron	13205012	13205170	+	asmbl_50314,asmbl_50316,asmbl_50317,asmbl_50318	none	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1972,blat.proc3825168.chain_1973,blat.proc3825168.chain_1975	5	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1974	2
scaffold_17	alternate_exon	5998745	5998987	+	asmbl_18835	none	STRG.20285.1,blat.proc3825174.chain_1139	2	STRG.20285.2,STRG.20285.5	2
scaffold_2	retained_intron	5200440	5200571	+	asmbl_24397,asmbl_24401	none	STRG.1940.2,Trinity_GG_18384_c0_g1_i2,blat.proc3825164.chain_2047	3	STRG.1940.3	1
scaffold_15	spliced_intron	12008633	12009314	-	asmbl_14555	none	STRG.18664.3,blat.proc3825156.chain_3539,blat.proc3825156.chain_3541	3	STRG.18664.2,Trinity_GG_10486_c1_g1_i10,blat.proc3825156.chain_3537,blat.proc3825156.chain_3540	4
scaffold_19	retained_intron	11483479	11483614	-	asmbl_22404	none	STRG.22486.1,blat.proc3825158.chain_3250	2	STRG.22486.2,blat.proc3825158.chain_3247	2
scaffold_8	skipped_exon	12693269	12693431	+	asmbl_53325,asmbl_53326,asmbl_53330,asmbl_53331	none	blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3011	4	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3009	3
scaffold_12	starts_in_intron	9231951	9231951	-	asmbl_8661,asmbl_8665	none	STRG.14939.2,STRG.14939.4	2	STRG.14939.1,STRG.14939.3,blat.proc3825154.chain_3447,blat.proc3825154.chain_3450	4
scaffold_26	alt_donor	10097599	10097600	-	asmbl_35807	none	STRG.28531.1,blat.proc3825162.chain_1717	2	STRG.28531.2	1
scaffold_8	spliced_intron	13132405	13133848	-	asmbl_52265	none	STRG.10488.1,blat.proc3825152.chain_2748	2	STRG.10488.2,blat.proc3825152.chain_2750,blat.proc3825152.chain_2751	3
scaffold_6	spliced_intron	10916682	10916800	+	asmbl_47310,asmbl_47311	none	STRG.7909.3,blat.proc3825168.chain_386,blat.proc3825168.chain_389	3	Trinity_GG_21658_c0_g1_i3,blat.proc3825168.chain_390	2
scaffold_18	alt_acceptor	178202	178203	+	asmbl_20267,asmbl_20268	none	STRG.20973.1,STRG.20973.2,Trinity_GG_28849_c0_g1_i6,blat.proc3825174.chain_1896,blat.proc3825174.chain_1898	5	STRG.20973.3,Trinity_GG_28849_c0_g1_i5,blat.proc3825174.chain_1897,blat.proc3825174.chain_1899	4
scaffold_16	alt_acceptor	789895	789896	+	asmbl_16048,asmbl_16049	none	STRG.19056.1,blat.proc3825172.chain_3646,blat.proc3825172.chain_3647	3	STRG.19056.2,blat.proc3825172.chain_3648	2
scaffold_19	spliced_intron	13007510	13007898	+	asmbl_21836,asmbl_21837,asmbl_21841	none	STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i10,Trinity_GG_29821_c0_g1_i11,blat.proc3825174.chain_3645,blat.proc3825174.chain_3646,blat.proc3825174.chain_3650	7	Trinity_GG_29821_c0_g1_i3,blat.proc3825174.chain_3648	2
scaffold_26	alt_donor	10119722	10119723	-	asmbl_35814,asmbl_35817,asmbl_35818,asmbl_35820,asmbl_35821,asmbl_35822	none	STRG.28530.1,STRG.28530.2,STRG.28530.3,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i8,blat.proc3825162.chain_1709,blat.proc3825162.chain_1712,blat.proc3825162.chain_1714,blat.proc3825162.chain_1715	11	Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710	2
scaffold_14	ends_in_intron	15346007	15346007	-	asmbl_13713,asmbl_13716	none	Trinity_GG_9998_c0_g1_i3,blat.proc3825156.chain_2606,blat.proc3825156.chain_2608	3	STRG.17765.1,STRG.17765.3,Trinity_GG_9998_c0_g1_i4,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2605,blat.proc3825156.chain_2607,blat.proc3825156.chain_2610	7
scaffold_16	alt_acceptor	7546999	7547000	+	asmbl_16350	none	STRG.19407.2	1	STRG.19407.1,blat.proc3825174.chain_292	2
scaffold_27	alt_acceptor	9863290	9863291	+	asmbl_36531	none	STRG.29209.1,blat.proc3825178.chain_2421	2	STRG.29209.2,blat.proc3825178.chain_2420	2
scaffold_18	starts_in_intron	2318006	2318006	-	asmbl_19721	none	blat.proc3825158.chain_2110	1	STRG.21119.2	1
scaffold_5	retained_intron	12258749	12258866	-	asmbl_44442	none	STRG.6459.2,blat.proc3825150.chain_2630	2	STRG.6459.1,blat.proc3825150.chain_2631	2
scaffold_5	spliced_intron	8748542	8748659	+	asmbl_45565,asmbl_45568	none	STRG.6210.2,Trinity_GG_20640_c0_g1_i4,blat.proc3825166.chain_2308,blat.proc3825166.chain_2309	4	STRG.6210.1,Trinity_GG_20640_c0_g1_i3,Trinity_GG_20640_c0_g1_i5,blat.proc3825166.chain_2310,blat.proc3825166.chain_2311,blat.proc3825166.chain_2312	6
scaffold_27	retained_exon	5017042	5017098	+	asmbl_36335,asmbl_36336	none	STRG.28933.1,STRG.28933.2,blat.proc3825178.chain_2137,blat.proc3825178.chain_2139	4	STRG.28933.3,Trinity_GG_33329_c0_g1_i3,blat.proc3825178.chain_2138	3
scaffold_13	retained_intron	534811	534931	-	asmbl_9361	none	Trinity_GG_8674_c0_g1_i6,blat.proc3825156.chain_328	2	STRG.15447.1,Trinity_GG_8674_c0_g1_i1,Trinity_GG_8674_c0_g1_i2,blat.proc3825156.chain_326,blat.proc3825156.chain_327	5
scaffold_8	starts_in_intron	17282549	17282549	-	asmbl_52437	none	Trinity_GG_5894_c4_g1_i1,blat.proc3825152.chain_2863	2	STRG.10651.1,blat.proc3825152.chain_2857,blat.proc3825152.chain_2859	3
scaffold_7	ends_in_intron	6910864	6910864	-	asmbl_50937	none	blat.proc3825152.chain_1412	1	STRG.8958.1,blat.proc3825152.chain_1410	2
scaffold_20	retained_exon	631162	631242	-	asmbl_25501	none	STRG.22765.3,blat.proc3825158.chain_3609	2	STRG.22765.2,blat.proc3825158.chain_3608	2
scaffold_19	spliced_intron	13011394	13011749	-	asmbl_22581,asmbl_22583	none	STRG.22624.1,blat.proc3825158.chain_3455,blat.proc3825158.chain_3456	3	STRG.22624.2,blat.proc3825158.chain_3457	2
scaffold_13	alternate_exon	1234811	1234983	+	asmbl_10556	none	STRG.15494.4	1	STRG.15494.1,STRG.15494.2,blat.proc3825172.chain_311	3
scaffold_16	starts_in_intron	14685920	14685920	-	asmbl_17493	none	Trinity_GG_11107_c0_g1_i3,blat.proc3825158.chain_854,blat.proc3825158.chain_855	3	STRG.19871.1,Trinity_GG_11107_c0_g1_i2,blat.proc3825158.chain_856	3
scaffold_10	ends_in_intron	3714552	3714552	+	asmbl_3062	none	blat.proc3825170.chain_906	1	STRG.12198.1,STRG.12198.2,blat.proc3825170.chain_905	3
scaffold_2	starts_in_intron	17456339	17456339	+	asmbl_25168	none	blat.proc3825164.chain_2878	1	STRG.2631.1,STRG.2631.2,blat.proc3825164.chain_2879	3
scaffold_5	alt_acceptor	9085032	9085033	+	asmbl_45599,asmbl_45603,asmbl_45604,asmbl_45605	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	5	blat.proc3825166.chain_2477	1
scaffold_19	alt_donor	12689072	12689073	-	asmbl_22528	none	STRG.22592.2,blat.proc3825158.chain_3368	2	STRG.22592.1,blat.proc3825158.chain_3366,blat.proc3825158.chain_3367,blat.proc3825158.chain_3369	4
scaffold_7	alt_donor	15053525	15053526	-	asmbl_51359	none	STRG.9524.2	1	blat.proc3825152.chain_1875	1
scaffold_18	alt_donor	2820946	2820947	+	asmbl_20430	none	blat.proc3825174.chain_2047	1	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2052,blat.proc3825174.chain_2056	4
scaffold_6	retained_intron	13657677	13658201	-	asmbl_48927	none	STRG.8106.1,blat.proc3825152.chain_524	2	STRG.8106.3,blat.proc3825152.chain_526	2
scaffold_9	retained_intron	17851315	17852001	+	asmbl_54653	none	STRG.11873.3	1	STRG.11873.2,Trinity_GG_23881_c0_g1_i5,blat.proc3825170.chain_570	3
scaffold_14	spliced_intron	11676922	11677256	-	asmbl_13520	none	STRG.17513.2,blat.proc3825156.chain_2347	2	STRG.17513.3,blat.proc3825156.chain_2348	2
scaffold_24	starts_in_intron	1953150	1953150	-	asmbl_32761	none	blat.proc3825160.chain_3546	1	STRG.26428.1,blat.proc3825160.chain_3545,blat.proc3825160.chain_3547	3
scaffold_8	spliced_intron	11851123	11851344	+	asmbl_53277,asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53288,asmbl_53292,asmbl_53293	none	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3016,blat.proc3825168.chain_3018,blat.proc3825168.chain_3019,blat.proc3825168.chain_3020,blat.proc3825168.chain_3021,blat.proc3825168.chain_3022,blat.proc3825168.chain_3023,blat.proc3825168.chain_3025,blat.proc3825168.chain_3027	13	blat.proc3825168.chain_3015,blat.proc3825168.chain_3024	2
scaffold_3	alt_donor	8091814	8091815	+	asmbl_40195	none	STRG.3388.2,Trinity_GG_19234_c0_g1_i1,blat.proc3825164.chain_3654	3	STRG.3388.1	1
scaffold_18	spliced_intron	11329326	11329551	+	asmbl_20939,asmbl_20940,asmbl_20942,asmbl_20943	none	STRG.21676.1,STRG.21676.2,blat.proc3825174.chain_2683,blat.proc3825174.chain_2686,blat.proc3825174.chain_2691	5	Trinity_GG_29277_c0_g1_i3,blat.proc3825174.chain_2685	2
scaffold_21	starts_in_intron	1046336	1046336	+	asmbl_28321	none	blat.proc3825176.chain_992	1	STRG.23786.1,STRG.23786.2,blat.proc3825176.chain_990,blat.proc3825176.chain_991,blat.proc3825176.chain_993	5
scaffold_8	alt_donor	4847434	4847435	-	asmbl_51809,asmbl_51811	none	STRG.9950.2,blat.proc3825152.chain_2224	2	STRG.9950.1,blat.proc3825152.chain_2223,blat.proc3825152.chain_2225,blat.proc3825152.chain_2226	4
scaffold_5	spliced_intron	16206282	16206597	+	asmbl_46059,asmbl_46061	none	STRG.6809.1,blat.proc3825166.chain_2951,blat.proc3825166.chain_2953,blat.proc3825166.chain_2954	4	blat.proc3825166.chain_2952	1
scaffold_4	retained_intron	4416472	4417029	+	asmbl_41250,asmbl_41256,asmbl_41257,asmbl_41261	none	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_847,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	5	Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_850	2
scaffold_3	alt_acceptor	10628899	10628900	+	asmbl_40280	none	blat.proc3825164.chain_3688	1	STRG.3513.2,STRG.3513.5,blat.proc3825164.chain_3683,blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687	6
scaffold_14	spliced_intron	9475503	9475665	+	asmbl_12286	none	STRG.17340.2	1	STRG.17340.1,STRG.17340.3,Trinity_GG_26857_c0_g1_i1,Trinity_GG_26857_c0_g1_i2,blat.proc3825172.chain_2107,blat.proc3825172.chain_2108	6
scaffold_21	alt_donor	2484567	2484568	-	asmbl_27465	none	STRG.23873.3	1	STRG.23873.1,STRG.23873.4,Trinity_GG_13318_c0_g1_i2,blat.proc3825160.chain_1023	4
scaffold_25	spliced_intron	6253172	6253303	+	asmbl_33604,asmbl_33605,asmbl_33606	none	STRG.27510.1,blat.proc3825178.chain_623,blat.proc3825178.chain_625,blat.proc3825178.chain_626	4	Trinity_GG_32481_c0_g1_i2,blat.proc3825178.chain_624	2
scaffold_12	spliced_intron	7172399	7172720	+	asmbl_7721,asmbl_7723	none	STRG.14794.2,blat.proc3825170.chain_3304,blat.proc3825170.chain_3305	3	blat.proc3825170.chain_3303	1
scaffold_14	retained_intron	13897375	13897832	+	asmbl_12515,asmbl_12516	none	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2	STRG.17673.4	1
scaffold_2	alt_acceptor	4501841	4501842	-	asmbl_23077	none	STRG.1880.1,blat.proc3825148.chain_1835	2	STRG.1880.2	1
scaffold_11	alternate_exon	6252374	6252705	+	asmbl_5623	none	blat.proc3825170.chain_2242	1	STRG.13692.1,blat.proc3825170.chain_2239	2
scaffold_12	spliced_intron	12291136	12292234	-	asmbl_8859	none	STRG.15130.1	1	STRG.15130.2,STRG.15130.4,Trinity_GG_8430_c0_g1_i4,Trinity_GG_8430_c1_g1_i1,blat.proc3825154.chain_3608,blat.proc3825154.chain_3609	6
scaffold_7	starts_in_intron	8621452	8621452	+	asmbl_50032	none	blat.proc3825168.chain_1614	1	STRG.9097.1,STRG.9097.2,blat.proc3825168.chain_1613,blat.proc3825168.chain_1615,blat.proc3825168.chain_1616	5
scaffold_13	retained_intron	7002522	7002602	-	asmbl_9832	none	STRG.15988.2	1	STRG.15988.1,blat.proc3825156.chain_829	2
scaffold_1	spliced_intron	18784825	18784961	-	asmbl_1132	none	STRG.1313.2,blat.proc3825148.chain_1309	2	STRG.1313.1,blat.proc3825148.chain_1310	2
scaffold_26	retained_intron	3811137	3811207	-	asmbl_35507	none	STRG.28081.2,blat.proc3825162.chain_1361	2	STRG.28081.1,blat.proc3825162.chain_1362	2
scaffold_16	spliced_intron	318642	318842	+	asmbl_16025	none	STRG.19023.2,blat.proc3825172.chain_3680	2	blat.proc3825172.chain_3679	1
scaffold_28	alt_acceptor	8414930	8414931	+	asmbl_37747	none	STRG.29918.2	1	STRG.29918.1,Trinity_GG_33871_c0_g1_i1,Trinity_GG_33871_c0_g1_i2,blat.proc3825178.chain_3062,blat.proc3825178.chain_3063	5
scaffold_1	starts_in_intron	11055650	11055650	-	asmbl_604	none	blat.proc3825148.chain_698	1	STRG.723.1,STRG.723.2,blat.proc3825148.chain_696,blat.proc3825148.chain_697	4
scaffold_25	starts_in_intron	3682715	3682715	+	asmbl_33450	none	blat.proc3825178.chain_389	1	STRG.27314.1,blat.proc3825178.chain_390	2
scaffold_1	retained_intron	12689792	12689998	-	asmbl_744	none	STRG.893.3,Trinity_GG_464_c0_g1_i1,Trinity_GG_464_c0_g1_i2,blat.proc3825148.chain_877,blat.proc3825148.chain_879	5	STRG.893.1,STRG.893.2,STRG.893.4,blat.proc3825148.chain_876	4
scaffold_9	alternate_exon	4206117	4206311	+	asmbl_53945	none	blat.proc3825168.chain_3486	1	STRG.11024.2	1
scaffold_14	alternate_exon	15398198	15398228	-	asmbl_13723	none	STRG.17772.2,blat.proc3825156.chain_2591	2	STRG.17772.1,blat.proc3825156.chain_2590	2
scaffold_11	alt_donor	11594060	11594061	+	asmbl_5975	none	STRG.14089.1,Trinity_GG_25088_c0_g1_i2,blat.proc3825170.chain_2650	3	Trinity_GG_25088_c0_g1_i1,blat.proc3825170.chain_2651	2
scaffold_20	alt_donor	8760706	8760707	-	asmbl_26011	none	STRG.23421.2	1	STRG.23421.1,blat.proc3825160.chain_529	2
scaffold_11	alt_acceptor	6997532	6997533	-	asmbl_6751	none	STRG.13719.2	1	STRG.13719.1	1
scaffold_4	alt_acceptor	7991092	7991093	+	asmbl_41523	none	STRG.4618.2,blat.proc3825166.chain_1079	2	STRG.4618.3	1
scaffold_1	alternate_exon	11708942	11709103	+	asmbl_2135	none	STRG.785.1,Trinity_GG_17797_c0_g1_i2,blat.proc3825164.chain_936	3	blat.proc3825164.chain_938	1
scaffold_1	alt_donor	14429194	14429195	+	asmbl_2393,asmbl_2394,asmbl_2397	none	STRG.1046.3,blat.proc3825164.chain_1218,blat.proc3825164.chain_1219,blat.proc3825164.chain_1220	4	STRG.1046.1,STRG.1046.2	2
scaffold_8	spliced_intron	18089772	18090313	+	asmbl_53526	none	blat.proc3825168.chain_3141	1	STRG.10711.1,blat.proc3825168.chain_3139	2
scaffold_4	alt_acceptor	12341914	12341915	-	asmbl_42901,asmbl_42902	none	STRG.4868.1,blat.proc3825150.chain_1056	2	STRG.4868.2,blat.proc3825150.chain_1054	2
scaffold_3	retained_exon	6188092	6189526	-	asmbl_38914	none	blat.proc3825148.chain_3124	1	STRG.3266.1,blat.proc3825148.chain_3119,blat.proc3825148.chain_3121	3
scaffold_5	ends_in_intron	18262268	18262268	+	asmbl_46242	none	STRG.6968.3	1	STRG.6968.1,STRG.6968.2,STRG.6968.4,blat.proc3825166.chain_3184,blat.proc3825166.chain_3187,blat.proc3825166.chain_3188,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	8
scaffold_5	alternate_exon	2609515	2609898	+	asmbl_45187	none	STRG.5788.2,Trinity_GG_20472_c1_g1_i1,blat.proc3825166.chain_2015	3	STRG.5788.1,blat.proc3825166.chain_2012,blat.proc3825166.chain_2013	3
scaffold_2	alt_acceptor	686442	686443	+	asmbl_24094	none	STRG.1546.1,blat.proc3825164.chain_1677	2	STRG.1546.2	1
scaffold_17	alt_acceptor	5997626	5997627	+	asmbl_18835,asmbl_18837	none	STRG.20285.1,STRG.20285.2	2	STRG.20285.4,STRG.20285.5,blat.proc3825174.chain_1141	3
scaffold_21	spliced_intron	532678	533027	-	asmbl_27333	none	STRG.23746.1,Trinity_GG_13229_c0_g1_i1,blat.proc3825160.chain_859	3	Trinity_GG_13229_c0_g1_i2,Trinity_GG_13229_c0_g1_i3,blat.proc3825160.chain_860,blat.proc3825160.chain_861	4
scaffold_17	alt_acceptor	9567810	9567811	+	asmbl_19116	none	Trinity_GG_28570_c0_g1_i2,blat.proc3825174.chain_1414	2	STRG.20575.1,Trinity_GG_28570_c0_g1_i1,Trinity_GG_28570_c0_g1_i3,blat.proc3825174.chain_1411,blat.proc3825174.chain_1413	5
scaffold_23	skipped_exon	4099715	4100533	-	asmbl_30833	none	STRG.25826.2	1	blat.proc3825160.chain_3031	1
scaffold_14	ends_in_intron	7230477	7230477	+	asmbl_12138	none	blat.proc3825172.chain_1937	1	STRG.17155.1	1
scaffold_2	alternate_exon	923611	923651	+	asmbl_24158	none	STRG.1570.5	1	STRG.1570.1,STRG.1570.3,STRG.1570.4,STRG.1570.6,blat.proc3825164.chain_1625,blat.proc3825164.chain_1629,blat.proc3825164.chain_1630,blat.proc3825164.chain_1631,blat.proc3825164.chain_1632	9
scaffold_7	spliced_intron	17685023	17685192	+	asmbl_50490	none	STRG.9618.1,blat.proc3825168.chain_2077	2	Trinity_GG_22620_c0_g1_i2,blat.proc3825168.chain_2076	2
scaffold_8	spliced_intron	18573669	18573909	-	asmbl_52556,asmbl_52558	none	STRG.10754.2,STRG.10754.3,Trinity_GG_5945_c0_g1_i1,blat.proc3825152.chain_2963	4	STRG.10754.1,Trinity_GG_5945_c0_g1_i4,blat.proc3825152.chain_2965	3
scaffold_27	alternate_exon	5682001	5682120	+	asmbl_36361,asmbl_36362	none	STRG.28977.2,blat.proc3825178.chain_2112	2	STRG.28977.1,STRG.28977.3,STRG.28977.4,blat.proc3825178.chain_2111,blat.proc3825178.chain_2114,blat.proc3825178.chain_2115	6
scaffold_11	alt_acceptor	2855085	2855086	+	asmbl_5388	none	STRG.13418.1,Trinity_GG_24636_c0_g1_i3,blat.proc3825170.chain_1875	3	STRG.13418.2	1
scaffold_13	alt_acceptor	663494	663495	-	asmbl_9364,asmbl_9367	none	STRG.15453.2,Trinity_GG_8668_c0_g1_i4,Trinity_GG_8668_c0_g1_i5,blat.proc3825156.chain_312,blat.proc3825156.chain_315	5	STRG.15453.1,Trinity_GG_8668_c0_g1_i3,blat.proc3825156.chain_313	3
scaffold_25	skipped_exon	7832264	7832954	-	asmbl_34409	none	STRG.27606.2	1	STRG.27606.1	1
scaffold_25	alt_donor	6026112	6026113	-	asmbl_34303	none	STRG.27505.1	1	STRG.27505.2	1
scaffold_6	spliced_intron	16876680	16877084	-	asmbl_49169	none	STRG.8405.3,blat.proc3825152.chain_871	2	STRG.8405.1,blat.proc3825152.chain_873	2
scaffold_2	skipped_exon	923893	926762	+	asmbl_24155,asmbl_24156	none	STRG.1570.1,blat.proc3825164.chain_1625,blat.proc3825164.chain_1632	3	STRG.1570.3,STRG.1570.6,blat.proc3825164.chain_1630,blat.proc3825164.chain_1631	4
scaffold_14	spliced_intron	6582351	6582780	+	asmbl_12087	none	STRG.17108.2,blat.proc3825172.chain_1777	2	STRG.17108.1,blat.proc3825172.chain_1780	2
scaffold_2	ends_in_intron	2543537	2543537	-	asmbl_22904	none	blat.proc3825148.chain_1647	1	STRG.1700.1,STRG.1700.2,STRG.1700.3,blat.proc3825148.chain_1645,blat.proc3825148.chain_1646	5
scaffold_4	alternate_exon	249397	249449	+	asmbl_41093	none	STRG.4120.1	1	Trinity_GG_19610_c0_g1_i1,blat.proc3825166.chain_586	2
scaffold_23	spliced_intron	8812037	8812206	+	asmbl_31785	none	STRG.26148.3	1	blat.proc3825176.chain_3123	1
scaffold_18	alternate_exon	9169964	9170005	+	asmbl_20880	none	Trinity_GG_29198_c0_g1_i1,blat.proc3825174.chain_2558	2	STRG.21559.2,STRG.21559.3,Trinity_GG_29198_c0_g1_i2,blat.proc3825174.chain_2557	4
scaffold_1	alt_donor	13885292	13885293	+	asmbl_2321,asmbl_2322	none	STRG.997.1,STRG.997.3,blat.proc3825164.chain_1165,blat.proc3825164.chain_1168	4	STRG.997.2,STRG.997.4,blat.proc3825164.chain_1166,blat.proc3825164.chain_1167,blat.proc3825164.chain_1169	5
scaffold_23	alt_donor	1140103	1140104	-	asmbl_30627,asmbl_30629,asmbl_30630,asmbl_30632	none	STRG.25596.1,STRG.25596.2,blat.proc3825160.chain_2731,blat.proc3825160.chain_2732,blat.proc3825160.chain_2733	5	blat.proc3825160.chain_2734	1
scaffold_26	spliced_intron	7774100	7774213	+	asmbl_35146	none	blat.proc3825178.chain_1507	1	Trinity_GG_33026_c0_g1_i5,blat.proc3825178.chain_1508	2
scaffold_2	spliced_intron	20429623	20429784	-	asmbl_23903	none	STRG.2882.1,blat.proc3825148.chain_2782	2	blat.proc3825148.chain_2783	1
scaffold_12	alt_acceptor	16182541	16182542	-	asmbl_9104,asmbl_9105	none	STRG.15375.1,STRG.15375.3,Trinity_GG_8604_c0_g1_i1,blat.proc3825156.chain_185	4	STRG.15375.2,Trinity_GG_8604_c0_g1_i2,blat.proc3825156.chain_186	3
scaffold_16	skipped_exon	1777457	1777810	+	asmbl_16088	none	STRG.19102.3,Trinity_GG_27779_c0_g1_i1,blat.proc3825174.chain_4	3	STRG.19102.1,STRG.19102.2,Trinity_GG_27779_c0_g1_i2,Trinity_GG_27779_c0_g1_i3,blat.proc3825174.chain_2,blat.proc3825174.chain_3	6
scaffold_13	spliced_intron	3733773	3733964	+	asmbl_10734	none	STRG.15695.1,blat.proc3825172.chain_441	2	blat.proc3825172.chain_443,blat.proc3825172.chain_448	2
scaffold_8	retained_intron	14130033	14130103	+	asmbl_53360	none	STRG.10518.2	1	STRG.10518.1,blat.proc3825168.chain_3066	2
scaffold_4	spliced_intron	6188631	6188800	-	asmbl_42660	none	STRG.4491.3,Trinity_GG_2477_c0_g1_i3,blat.proc3825150.chain_678	3	STRG.4491.2,blat.proc3825150.chain_679	2
scaffold_2	retained_intron	10655085	10655168	+	asmbl_24714	none	STRG.2225.2	1	STRG.2225.1,blat.proc3825164.chain_2399,blat.proc3825164.chain_2400	3
scaffold_2	retained_intron	9191502	9191609	-	asmbl_23364,asmbl_23365	none	blat.proc3825148.chain_2200,blat.proc3825148.chain_2203	2	STRG.2171.1,STRG.2171.2,blat.proc3825148.chain_2197,blat.proc3825148.chain_2198,blat.proc3825148.chain_2199,blat.proc3825148.chain_2201,blat.proc3825148.chain_2202	7
scaffold_3	alternate_exon	13698546	13700564	+	asmbl_40452,asmbl_40454	none	STRG.3717.2,blat.proc3825166.chain_218	2	STRG.3717.4,Trinity_GG_19399_c0_g1_i2,Trinity_GG_19399_c1_g1_i1,blat.proc3825166.chain_217,blat.proc3825166.chain_224	5
scaffold_13	spliced_intron	7934786	7934861	-	asmbl_9913,asmbl_9914,asmbl_9915,asmbl_9916,asmbl_9919	none	STRG.16070.1,STRG.16070.2,STRG.16070.4,blat.proc3825156.chain_874,blat.proc3825156.chain_875,blat.proc3825156.chain_876,blat.proc3825156.chain_877	7	STRG.16070.3,blat.proc3825156.chain_878	2
scaffold_28	retained_intron	5234854	5235055	-	asmbl_38269	none	Trinity_GG_16598_c0_g1_i7,blat.proc3825162.chain_2779	2	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2780,blat.proc3825162.chain_2781,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2786,blat.proc3825162.chain_2787	8
scaffold_7	retained_intron	10536228	10536307	-	asmbl_51128	none	STRG.9229.2,blat.proc3825152.chain_1578	2	STRG.9229.1	1
scaffold_10	alt_donor	3065892	3065893	-	asmbl_4160	none	blat.proc3825154.chain_667	1	STRG.12130.1,blat.proc3825154.chain_664	2
scaffold_9	alt_donor	16384756	16384757	+	asmbl_54594	none	STRG.11792.1,blat.proc3825170.chain_587	2	STRG.11792.2,blat.proc3825170.chain_588	2
scaffold_6	ends_in_intron	10750475	10750475	+	asmbl_47294	none	blat.proc3825168.chain_366	1	blat.proc3825168.chain_364	1
scaffold_7	starts_in_intron	11918832	11918832	-	asmbl_51178	none	STRG.9299.1	1	STRG.9299.2,Trinity_GG_5242_c0_g1_i3,blat.proc3825152.chain_1651	3
scaffold_1	starts_in_intron	8752713	8752713	-	asmbl_496	none	blat.proc3825148.chain_598	1	STRG.579.1,STRG.579.2,STRG.579.3,blat.proc3825148.chain_597,blat.proc3825148.chain_599,blat.proc3825148.chain_602	6
scaffold_2	spliced_intron	11668002	11668168	+	asmbl_24766	none	STRG.2276.1,blat.proc3825164.chain_2461	2	blat.proc3825164.chain_2463	1
scaffold_5	ends_in_intron	6014059	6014059	-	asmbl_44079	none	Trinity_GG_3358_c1_g1_i4,blat.proc3825150.chain_2170	2	STRG.6019.1,STRG.6019.3,blat.proc3825150.chain_2168	3
scaffold_7	alt_acceptor	8659761	8659762	-	asmbl_51024,asmbl_51025	none	STRG.9099.1,blat.proc3825152.chain_1496,blat.proc3825152.chain_1499	3	STRG.9099.2	1
scaffold_12	starts_in_intron	1410665	1410665	+	asmbl_7474	none	blat.proc3825170.chain_3018	1	STRG.14468.1,blat.proc3825170.chain_3019	2
scaffold_2	alt_acceptor	960791	960792	-	asmbl_22829	none	STRG.1578.1,Trinity_GG_839_c0_g1_i1,blat.proc3825148.chain_1520	3	STRG.1578.2	1
scaffold_300	spliced_intron	1280	1585	+	asmbl_40903	none	STRG.30272.1,blat.proc3825178.chain_3365	2	STRG.30272.3,blat.proc3825178.chain_3363	2
scaffold_20	spliced_intron	9628124	9629033	+	asmbl_26871	none	STRG.23501.2	1	STRG.23501.1,STRG.23501.3,Trinity_GG_30232_c0_g1_i1,blat.proc3825176.chain_566,blat.proc3825176.chain_567	5
scaffold_20	spliced_intron	1469616	1470058	-	asmbl_25571,asmbl_25572	none	STRG.22868.2,STRG.22868.4,blat.proc3825158.chain_3739	3	STRG.22868.1,Trinity_GG_12770_c1_g1_i7,blat.proc3825158.chain_3740	3
scaffold_10	alternate_exon	5548180	5548255	+	asmbl_3186	none	STRG.12375.2,blat.proc3825170.chain_1022	2	STRG.12375.1,blat.proc3825170.chain_1021	2
scaffold_19	alt_acceptor	10240087	10240088	-	asmbl_22348	none	STRG.22406.2	1	STRG.22406.1,blat.proc3825158.chain_3121	2
scaffold_9	retained_intron	8948604	8948646	-	asmbl_55154	none	Trinity_GG_6243_c0_g1_i2,blat.proc3825152.chain_3509	2	STRG.11282.1	1
scaffold_9	alt_acceptor	8585600	8585601	+	asmbl_54176	none	STRG.11268.3	1	STRG.11268.1	1
scaffold_9	retained_intron	14818996	14819580	-	asmbl_55500,asmbl_55501	none	STRG.11702.8,blat.proc3825154.chain_162	2	STRG.11702.3,STRG.11702.7,Trinity_GG_6457_c0_g1_i2,blat.proc3825154.chain_158	4
scaffold_2	retained_exon	19025541	19025614	-	asmbl_23846	none	blat.proc3825148.chain_2737	1	blat.proc3825148.chain_2738	1
scaffold_8	spliced_intron	11272951	11273303	+	asmbl_53210	none	STRG.10346.3,Trinity_GG_23069_c0_g1_i2,blat.proc3825168.chain_2914	3	STRG.10346.2	1
scaffold_22	starts_in_intron	4565229	4565229	+	asmbl_30021	none	blat.proc3825176.chain_1979	1	STRG.24886.1,blat.proc3825176.chain_1978	2
scaffold_1	retained_intron	20347140	20348362	+	asmbl_2617,asmbl_2618,asmbl_2623	none	STRG.1396.2,STRG.1396.3,Trinity_GG_18153_c0_g1_i4,blat.proc3825164.chain_1584,blat.proc3825164.chain_1586	5	STRG.1396.1	1
scaffold_22	starts_in_intron	8298917	8298917	+	asmbl_30273	none	STRG.25185.1	1	blat.proc3825176.chain_2311	1
scaffold_17	starts_in_intron	9699280	9699280	+	asmbl_19125	none	blat.proc3825174.chain_1462	1	STRG.20588.1,Trinity_GG_28593_c0_g1_i3,blat.proc3825174.chain_1460	3
scaffold_13	starts_in_intron	8802563	8802563	-	asmbl_9978	none	Trinity_GG_9086_c0_g1_i3,blat.proc3825156.chain_1071	2	STRG.16153.4,blat.proc3825156.chain_1065,blat.proc3825156.chain_1067,blat.proc3825156.chain_1070,blat.proc3825156.chain_1072	5
scaffold_17	alt_donor	9994463	9994464	+	asmbl_19149	none	blat.proc3825174.chain_1474	1	STRG.20614.1,STRG.20614.2,blat.proc3825174.chain_1475	3
scaffold_10	retained_intron	5862111	5862269	-	asmbl_4396,asmbl_4400	none	STRG.12409.3,Trinity_GG_6938_c1_g1_i1,blat.proc3825154.chain_986	3	STRG.12409.2,Trinity_GG_6938_c1_g1_i3,blat.proc3825154.chain_987	3
scaffold_13	retained_intron	11598971	11599668	+	asmbl_11284	none	Trinity_GG_26236_c0_g2_i1,blat.proc3825172.chain_1037	2	STRG.16316.4,STRG.16316.5,STRG.16316.6,blat.proc3825172.chain_1029,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	6
scaffold_13	alt_acceptor	3526625	3526626	+	asmbl_10703	none	blat.proc3825172.chain_363	1	STRG.15676.1,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_364	4
scaffold_16	spliced_intron	14553404	14553521	+	asmbl_16685,asmbl_16686,asmbl_16689,asmbl_16690,asmbl_16691	none	STRG.19851.1,STRG.19851.2,STRG.19851.3,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i3,Trinity_GG_28180_c0_g1_i4,blat.proc3825174.chain_729,blat.proc3825174.chain_730,blat.proc3825174.chain_733	9	Trinity_GG_28180_c0_g1_i1,blat.proc3825174.chain_731	2
scaffold_15	alt_donor	165784	165785	+	asmbl_14948	none	STRG.17873.1	1	STRG.17873.2	1
scaffold_19	alt_acceptor	13264477	13264478	-	asmbl_22631,asmbl_22632	none	STRG.22647.1,Trinity_GG_12616_c0_g1_i4,blat.proc3825158.chain_3492	3	STRG.22647.2,blat.proc3825158.chain_3491	2
scaffold_27	starts_in_intron	134285	134285	-	asmbl_36639	none	STRG.28543.4,blat.proc3825162.chain_1805	2	STRG.28543.2,STRG.28543.3,STRG.28543.5,Trinity_GG_15985_c0_g1_i5,blat.proc3825162.chain_1801,blat.proc3825162.chain_1804	6
scaffold_13	ends_in_intron	5507049	5507049	+	asmbl_10856,asmbl_10858	none	STRG.15845.1,STRG.15845.3,Trinity_GG_25977_c0_g1_i1,blat.proc3825172.chain_514,blat.proc3825172.chain_515	5	STRG.15845.4,Trinity_GG_25977_c0_g1_i3,blat.proc3825172.chain_513	3
scaffold_10	retained_intron	4715798	4715969	-	asmbl_4308	none	STRG.12295.3	1	STRG.12295.2	1
scaffold_3	alt_acceptor	7722252	7722253	-	asmbl_38986	none	STRG.3364.1	1	STRG.3364.2,blat.proc3825148.chain_3171	2
scaffold_4	starts_in_intron	10857119	10857119	+	asmbl_41677	none	STRG.4807.4	1	STRG.4807.1,STRG.4807.2,STRG.4807.3,blat.proc3825166.chain_1275	4
scaffold_24	starts_in_intron	6090518	6090518	-	asmbl_32928	none	blat.proc3825162.chain_50	1	blat.proc3825162.chain_51,blat.proc3825162.chain_53	2
scaffold_17	alternate_exon	12383155	12383231	-	asmbl_18326	none	blat.proc3825158.chain_1711	1	STRG.20776.1,STRG.20776.2,STRG.20776.3,STRG.20776.4	4
scaffold_1	starts_in_intron	7603738	7603738	+	asmbl_1907	none	blat.proc3825164.chain_680	1	STRG.530.1,blat.proc3825164.chain_681	2
scaffold_11	retained_intron	1305168	1305286	-	asmbl_6428	none	Trinity_GG_7464_c1_g1_i1,blat.proc3825154.chain_1905	2	STRG.13321.1,blat.proc3825154.chain_1906	2
scaffold_2	alt_donor	888427	888428	+	asmbl_24132,asmbl_24133	none	STRG.1565.2,STRG.1565.3	2	STRG.1565.1,STRG.1565.5,blat.proc3825164.chain_1711	3
scaffold_39	alt_donor	34167	34168	-	asmbl_41072	none	STRG.30041.2	1	STRG.30041.1,STRG.30041.3,blat.proc3825162.chain_3204	3
scaffold_5	alt_donor	13887174	13887175	-	asmbl_44578	none	STRG.6617.2,blat.proc3825150.chain_2770	2	STRG.6617.3,blat.proc3825150.chain_2771	2
scaffold_19	retained_exon	3683036	3683128	+	asmbl_21333,asmbl_21334	none	STRG.22058.1,STRG.22058.3	2	STRG.22058.2	1
scaffold_21	alt_donor	8173382	8173383	+	asmbl_28791	none	STRG.24353.2,blat.proc3825176.chain_1510	2	STRG.24353.1,blat.proc3825176.chain_1511	2
scaffold_1	starts_in_intron	5221681	5221681	-	asmbl_248,asmbl_250	none	STRG.330.2,STRG.330.3,blat.proc3825148.chain_240	3	STRG.330.1,blat.proc3825148.chain_239	2
scaffold_15	ends_in_intron	3693427	3693427	-	asmbl_14111	none	Trinity_GG_10206_c0_g2_i1,blat.proc3825156.chain_2989	2	STRG.18149.2,STRG.18149.3	2
scaffold_17	ends_in_intron	9455310	9455310	+	asmbl_19082,asmbl_19083,asmbl_19084	none	STRG.20569.2,STRG.20569.3,blat.proc3825174.chain_1438,blat.proc3825174.chain_1440,blat.proc3825174.chain_1442	5	STRG.20569.1,STRG.20569.4,Trinity_GG_28584_c0_g1_i1,Trinity_GG_28584_c0_g1_i2,Trinity_GG_28584_c0_g1_i4,Trinity_GG_28584_c0_g1_i7,blat.proc3825174.chain_1437,blat.proc3825174.chain_1439,blat.proc3825174.chain_1441,blat.proc3825174.chain_1443	10
scaffold_5	spliced_intron	4949952	4950472	+	asmbl_45317,asmbl_45319,asmbl_45320	none	STRG.5954.1,STRG.5954.2,STRG.5954.4,Trinity_GG_20574_c0_g1_i1,blat.proc3825166.chain_2183	5	STRG.5954.3,Trinity_GG_20574_c1_g1_i1,blat.proc3825166.chain_2184	3
scaffold_5	retained_intron	13316127	13316220	-	asmbl_44540	none	blat.proc3825150.chain_2764	1	STRG.6579.1,blat.proc3825150.chain_2763	2
scaffold_1	starts_in_intron	922705	922705	+	asmbl_1443	none	Trinity_GG_17320_c0_g1_i5,blat.proc3825164.chain_82	2	STRG.49.1,STRG.49.2,STRG.49.3,Trinity_GG_17320_c0_g1_i4,Trinity_GG_17320_c0_g1_i6,Trinity_GG_17320_c0_g1_i7,blat.proc3825164.chain_83,blat.proc3825164.chain_84,blat.proc3825164.chain_85	9
scaffold_17	alternate_exon	683578	683916	-	asmbl_17642	none	STRG.19921.1,blat.proc3825158.chain_959	2	STRG.19921.2,blat.proc3825158.chain_962	2
scaffold_18	alternate_exon	2050078	2050796	-	asmbl_19690	none	STRG.21094.1,Trinity_GG_11827_c0_g1_i1,Trinity_GG_11827_c0_g1_i2,Trinity_GG_11827_c1_g1_i1,blat.proc3825158.chain_2072,blat.proc3825158.chain_2073,blat.proc3825158.chain_2074	7	STRG.21094.2,STRG.21094.3	2
scaffold_4	spliced_intron	15679041	15679145	-	asmbl_43111,asmbl_43113,asmbl_43114	none	STRG.5151.1,blat.proc3825150.chain_1295,blat.proc3825150.chain_1296,blat.proc3825150.chain_1298	4	STRG.5151.2,blat.proc3825150.chain_1297	2
scaffold_22	retained_intron	323190	323437	+	asmbl_29840	none	STRG.24686.2	1	STRG.24686.3,blat.proc3825176.chain_1816	2
scaffold_14	starts_in_intron	12332830	12332830	+	asmbl_12422	none	blat.proc3825172.chain_2269	1	STRG.17561.1,Trinity_GG_26953_c0_g1_i2,blat.proc3825172.chain_2270	3
scaffold_27	spliced_intron	313987	314458	-	asmbl_36659	none	blat.proc3825162.chain_1725	1	STRG.28557.2,Trinity_GG_15948_c0_g1_i7	2
scaffold_8	skipped_exon	4870929	4871742	+	asmbl_52868,asmbl_52870,asmbl_52871	none	STRG.9952.1,STRG.9952.3,blat.proc3825168.chain_2514,blat.proc3825168.chain_2516,blat.proc3825168.chain_2518	5	STRG.9952.2,blat.proc3825168.chain_2517,blat.proc3825168.chain_2519	3
scaffold_14	alt_donor	1592551	1592552	-	asmbl_12899,asmbl_12900	none	STRG.16799.3,STRG.16799.4	2	STRG.16799.1,STRG.16799.2,Trinity_GG_16450_c0_g1_i1,Trinity_GG_16450_c0_g1_i2,blat.proc3825156.chain_1564,blat.proc3825156.chain_1566	6
scaffold_12	skipped_exon	14224107	14226458	+	asmbl_8072	none	STRG.15261.2	1	blat.proc3825172.chain_14	1
scaffold_4	spliced_intron	10872269	10872362	-	asmbl_42861,asmbl_42862,asmbl_42863	none	STRG.4808.1,blat.proc3825150.chain_986,blat.proc3825150.chain_988,blat.proc3825150.chain_989	4	blat.proc3825150.chain_987	1
scaffold_28	spliced_intron	6926103	6926670	-	asmbl_38366	none	STRG.29766.3	1	STRG.29766.1,Trinity_GG_16699_c0_g1_i2,blat.proc3825162.chain_2953	3
scaffold_1	alt_acceptor	20134876	20134877	-	asmbl_1173	none	STRG.1386.6	1	STRG.1386.1,STRG.1386.2,STRG.1386.5	3
scaffold_24	alt_acceptor	6449087	6449088	+	asmbl_32310,asmbl_32317	none	STRG.26699.2,blat.proc3825176.chain_3613,blat.proc3825176.chain_3615	3	STRG.26699.1,blat.proc3825176.chain_3611,blat.proc3825176.chain_3614,blat.proc3825176.chain_3618,blat.proc3825176.chain_3620	5
scaffold_6	spliced_intron	1345974	1346244	-	asmbl_48097,asmbl_48100	none	STRG.7183.2,STRG.7183.3,blat.proc3825150.chain_3280	3	STRG.7183.1,Trinity_GG_4002_c0_g1_i2,blat.proc3825150.chain_3278,blat.proc3825150.chain_3279	4
scaffold_18	spliced_intron	7662032	7662196	+	asmbl_20766	none	STRG.21471.3	1	STRG.21471.2,Trinity_GG_29183_c0_g1_i7	2
scaffold_6	alt_donor	19076966	19076967	+	asmbl_47868,asmbl_47871,asmbl_47873	none	STRG.8575.1,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i6,Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_948,blat.proc3825168.chain_951,blat.proc3825168.chain_952	7	STRG.8575.2,Trinity_GG_21983_c0_g1_i4,Trinity_GG_21983_c0_g1_i5,blat.proc3825168.chain_949,blat.proc3825168.chain_950	5
scaffold_28	ends_in_intron	7531827	7531827	+	asmbl_37692	none	blat.proc3825178.chain_2987	1	STRG.29834.1,blat.proc3825178.chain_2986,blat.proc3825178.chain_2990	3
scaffold_12	retained_intron	4984361	4984577	+	asmbl_7630	none	blat.proc3825170.chain_3139	1	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3141	5
scaffold_4	alt_acceptor	4426557	4426558	-	asmbl_42515	none	STRG.4343.2	1	STRG.4343.1,STRG.4343.3,blat.proc3825150.chain_580,blat.proc3825150.chain_581,blat.proc3825150.chain_582	5
scaffold_19	spliced_intron	10821455	10821556	+	asmbl_21660,asmbl_21661	none	STRG.22421.1,STRG.22421.2,Trinity_GG_29712_c0_g1_i1,blat.proc3825174.chain_3431,blat.proc3825174.chain_3432	5	blat.proc3825174.chain_3434	1
scaffold_21	ends_in_intron	6370105	6370105	+	asmbl_28629	none	Trinity_GG_30646_c0_g1_i1,blat.proc3825176.chain_1270	2	STRG.24158.1,Trinity_GG_30646_c0_g1_i2,blat.proc3825176.chain_1269	3
scaffold_12	retained_intron	16403693	16403810	+	asmbl_8168	none	STRG.15402.1,Trinity_GG_25733_c0_g1_i1,blat.proc3825172.chain_43	3	STRG.15402.4,STRG.15402.5,STRG.15402.6,blat.proc3825172.chain_46	4
scaffold_2	alt_acceptor	13385055	13385056	-	asmbl_23508	none	STRG.2355.2	1	STRG.2355.1,Trinity_GG_1304_c0_g1_i1,blat.proc3825148.chain_2336	3
scaffold_3	starts_in_intron	6649277	6649277	+	asmbl_40101	none	blat.proc3825164.chain_3534	1	STRG.3287.1,STRG.3287.2,blat.proc3825164.chain_3535	3
scaffold_17	ends_in_intron	1289734	1289734	-	asmbl_17681	none	Trinity_GG_11179_c0_g1_i6,blat.proc3825158.chain_971	2	STRG.19964.1,STRG.19964.2,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_972,blat.proc3825158.chain_973,blat.proc3825158.chain_975,blat.proc3825158.chain_976	8
scaffold_5	retained_intron	5047311	5047832	+	asmbl_45325	none	STRG.5958.4,Trinity_GG_20544_c0_g1_i5,Trinity_GG_20544_c0_g1_i7,blat.proc3825166.chain_2122,blat.proc3825166.chain_2124	5	STRG.5958.3,blat.proc3825166.chain_2123	2
scaffold_17	alt_donor	8318412	8318413	+	asmbl_18966,asmbl_18971	none	STRG.20456.2,blat.proc3825174.chain_1200,blat.proc3825174.chain_1206	3	STRG.20456.1,STRG.20456.3,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1201,blat.proc3825174.chain_1202	7
scaffold_20	starts_in_intron	862853	862853	+	asmbl_26392	none	Trinity_GG_29842_c0_g1_i2	1	STRG.22798.3	1
scaffold_13	spliced_intron	7965217	7965352	-	asmbl_9923	none	STRG.16075.1,blat.proc3825156.chain_949	2	STRG.16075.2	1
scaffold_15	alt_donor	14633890	14633891	-	asmbl_14732	none	STRG.18877.1,blat.proc3825156.chain_3750	2	STRG.18877.2,blat.proc3825156.chain_3749	2
scaffold_19	alt_acceptor	728426	728427	+	asmbl_21205,asmbl_21206	none	STRG.21857.1,STRG.21857.2	2	STRG.21857.3,STRG.21857.4,blat.proc3825174.chain_2906	3
scaffold_1	alt_donor	1417292	1417293	+	asmbl_1482	none	STRG.84.2,Trinity_GG_17391_c0_g1_i1,blat.proc3825164.chain_208	3	STRG.84.1,Trinity_GG_17391_c0_g1_i2,blat.proc3825164.chain_209	3
scaffold_13	alt_acceptor	6426693	6426694	+	asmbl_10937	none	STRG.15942.1	1	STRG.15942.2	1
scaffold_26	starts_in_intron	3669680	3669680	+	asmbl_34811	none	blat.proc3825178.chain_1112	1	STRG.28048.1,blat.proc3825178.chain_1108,blat.proc3825178.chain_1109,blat.proc3825178.chain_1110,blat.proc3825178.chain_1111	5
scaffold_21	alternate_exon	5774120	5775179	-	asmbl_27696	none	blat.proc3825160.chain_1201	1	STRG.24114.1,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200	4
scaffold_14	starts_in_intron	7498805	7498805	+	asmbl_12171	none	blat.proc3825172.chain_1879	1	STRG.17193.1,STRG.17193.2,STRG.17193.3,STRG.17193.4,blat.proc3825172.chain_1878	5
scaffold_26	alternate_exon	5035098	5035808	+	asmbl_34953	none	blat.proc3825178.chain_1165	1	STRG.28240.5,blat.proc3825178.chain_1176,blat.proc3825178.chain_1178	3
scaffold_13	alt_acceptor	1238502	1238503	+	asmbl_10546,asmbl_10547,asmbl_10550,asmbl_10551,asmbl_10553,asmbl_10556	none	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_311,blat.proc3825172.chain_312	10	STRG.15494.7	1
scaffold_25	spliced_intron	7220043	7220502	-	asmbl_34389	none	STRG.27575.1,blat.proc3825162.chain_972,blat.proc3825162.chain_973	3	blat.proc3825162.chain_971	1
scaffold_3	alt_acceptor	19814268	19814269	+	asmbl_40772,asmbl_40773,asmbl_40778,asmbl_40780	none	STRG.4097.1,STRG.4097.3,blat.proc3825166.chain_567,blat.proc3825166.chain_568,blat.proc3825166.chain_570	5	STRG.4097.2,STRG.4097.4,blat.proc3825166.chain_565,blat.proc3825166.chain_566,blat.proc3825166.chain_569	5
scaffold_19	spliced_intron	12107338	12107555	-	asmbl_22457	none	STRG.22539.5,blat.proc3825158.chain_3192	2	STRG.22539.2,STRG.22539.3,blat.proc3825158.chain_3188	3
scaffold_3	retained_intron	13988803	13989050	+	asmbl_40475	none	STRG.3744.2,Trinity_GG_19386_c0_g1_i2,blat.proc3825166.chain_190	3	STRG.3744.1,STRG.3744.4,blat.proc3825166.chain_191	3
scaffold_28	retained_intron	6515478	6515563	-	asmbl_38348,asmbl_38349	none	STRG.29749.1,STRG.29749.3	2	blat.proc3825162.chain_2874	1
scaffold_20	skipped_exon	7196433	7197471	+	asmbl_26707	none	STRG.23289.1	1	STRG.23289.2,blat.proc3825176.chain_409,blat.proc3825176.chain_410	3
scaffold_18	starts_in_intron	3697142	3697142	+	asmbl_20472	none	Trinity_GG_28966_c0_g1_i1,blat.proc3825174.chain_2116	2	STRG.21183.1	1
scaffold_28	alt_donor	7843840	7843841	-	asmbl_38422	none	STRG.29855.1,blat.proc3825162.chain_3039	2	STRG.29855.2,blat.proc3825162.chain_3038	2
scaffold_2	alt_donor	16292142	16292143	+	asmbl_25116	none	STRG.2564.1,blat.proc3825164.chain_2764	2	STRG.2564.2,blat.proc3825164.chain_2763	2
scaffold_13	spliced_intron	8022246	8022334	-	asmbl_9934,asmbl_9935	none	STRG.16086.2,blat.proc3825156.chain_880	2	STRG.16086.1,blat.proc3825156.chain_881	2
scaffold_4	alt_acceptor	14590801	14590802	-	asmbl_43052,asmbl_43053	none	STRG.5077.2,STRG.5077.3	2	STRG.5077.1,blat.proc3825150.chain_1241	2
scaffold_14	ends_in_intron	584112	584112	+	asmbl_11767,asmbl_11769,asmbl_11771,asmbl_11773	none	STRG.16740.1,STRG.16740.2,STRG.16740.4,Trinity_GG_26527_c0_g1_i1,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517,blat.proc3825172.chain_1519	7	STRG.16740.3	1
scaffold_21	retained_intron	5170097	5170194	-	asmbl_27623,asmbl_27624	none	blat.proc3825160.chain_1237,blat.proc3825160.chain_1238	2	STRG.24060.1,blat.proc3825160.chain_1239,blat.proc3825160.chain_1240,blat.proc3825160.chain_1241,blat.proc3825160.chain_1242	5
scaffold_6	starts_in_intron	9135494	9135494	+	asmbl_47215	none	blat.proc3825168.chain_218	1	STRG.7790.1,STRG.7790.2,STRG.7790.3,STRG.7790.4,STRG.7790.5,blat.proc3825168.chain_210,blat.proc3825168.chain_211,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_217,blat.proc3825168.chain_219	12
scaffold_2	alternate_exon	4331736	4332174	-	asmbl_23068	none	STRG.1863.1,blat.proc3825148.chain_1794	2	STRG.1863.2,blat.proc3825148.chain_1793	2
scaffold_27	skipped_exon	973032	974847	+	asmbl_35967	none	STRG.28595.4	1	STRG.28595.1,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i3,blat.proc3825178.chain_1718,blat.proc3825178.chain_1720	5
scaffold_10	starts_in_intron	10570839	10570839	+	asmbl_3425	none	Trinity_GG_24284_c0_g1_i6	1	STRG.12751.1	1
scaffold_15	starts_in_intron	10647179	10647179	-	asmbl_14444	none	Trinity_GG_10428_c0_g1_i9	1	STRG.18558.1,STRG.18558.2,STRG.18558.3,blat.proc3825156.chain_3414,blat.proc3825156.chain_3420	5
scaffold_12	spliced_intron	2721443	2721926	+	asmbl_7519	none	Trinity_GG_25344_c0_g1_i5	1	Trinity_GG_25344_c0_g2_i1,blat.proc3825170.chain_3080	2
scaffold_28	spliced_intron	2622616	2622713	+	asmbl_37387	none	STRG.29442.1,blat.proc3825178.chain_2541	2	blat.proc3825178.chain_2542	1
scaffold_9	alt_donor	1704984	1704985	-	asmbl_54837	none	STRG.10868.4	1	STRG.10868.1	1
scaffold_17	alternate_exon	11340008	11340107	-	asmbl_18278	none	STRG.20687.2	1	STRG.20687.1,blat.proc3825158.chain_1615,blat.proc3825158.chain_1616	3
scaffold_22	spliced_intron	6166014	6166161	-	asmbl_29319	none	STRG.24971.1,blat.proc3825160.chain_2117	2	Trinity_GG_13927_c0_g1_i1,blat.proc3825160.chain_2118	2
scaffold_2	spliced_intron	4836305	4836534	-	asmbl_23101,asmbl_23102,asmbl_23103	none	STRG.1905.1,blat.proc3825148.chain_1918,blat.proc3825148.chain_1922	3	blat.proc3825148.chain_1919	1
scaffold_1	starts_in_intron	20132399	20132399	+	asmbl_2607,asmbl_2609	none	Trinity_GG_18065_c0_g1_i5,blat.proc3825164.chain_1418,blat.proc3825164.chain_1420	3	STRG.1380.1,Trinity_GG_18065_c0_g1_i1,blat.proc3825164.chain_1417	3
scaffold_3	retained_intron	7927018	7927366	+	asmbl_40186	none	STRG.3380.2	1	STRG.3380.3	1
scaffold_18	retained_intron	7867916	7867988	+	asmbl_20798,asmbl_20799,asmbl_20802,asmbl_20803,asmbl_20806,asmbl_20807,asmbl_20808	none	STRG.21488.1,STRG.21488.4,STRG.21488.5,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i11,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2450,blat.proc3825174.chain_2451,blat.proc3825174.chain_2453,blat.proc3825174.chain_2456,blat.proc3825174.chain_2460	13	STRG.21488.2,STRG.21488.3,Trinity_GG_29146_c0_g1_i18,Trinity_GG_29146_c0_g1_i3,blat.proc3825174.chain_2452,blat.proc3825174.chain_2455,blat.proc3825174.chain_2458,blat.proc3825174.chain_2459	8
scaffold_16	skipped_exon	12022195	12022852	-	asmbl_17382	none	STRG.19729.1,blat.proc3825158.chain_787	2	STRG.19729.2,blat.proc3825158.chain_788	2
scaffold_5	alternate_exon	5607731	5608151	+	asmbl_45351	none	STRG.5985.1,blat.proc3825166.chain_2203	2	blat.proc3825166.chain_2202	1
scaffold_11	alternate_exon	7096152	7096185	+	asmbl_5660	none	STRG.13735.2,Trinity_GG_24873_c0_g1_i1,blat.proc3825170.chain_2263	3	STRG.13735.1,Trinity_GG_24873_c0_g1_i2,blat.proc3825170.chain_2262	3
scaffold_12	retained_intron	2987278	2987365	-	asmbl_8340	none	STRG.14535.2,Trinity_GG_8109_c1_g1_i1	2	STRG.14535.1	1
scaffold_6	spliced_intron	3056262	3056806	+	asmbl_46798,asmbl_46800,asmbl_46801,asmbl_46803,asmbl_46805,asmbl_46806	none	STRG.7319.1,STRG.7319.2,STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3520,blat.proc3825166.chain_3521,blat.proc3825166.chain_3522,blat.proc3825166.chain_3523,blat.proc3825166.chain_3524	9	blat.proc3825166.chain_3519	1
scaffold_14	alt_donor	15565742	15565743	+	asmbl_12622	none	STRG.17796.2	1	blat.proc3825172.chain_2534	1
scaffold_22	alt_acceptor	4357673	4357674	+	asmbl_29984	none	STRG.24857.2,blat.proc3825176.chain_1962	2	STRG.24857.1,blat.proc3825176.chain_1963,blat.proc3825176.chain_1964	3
scaffold_19	starts_in_intron	12486819	12486819	-	asmbl_22503	none	blat.proc3825158.chain_3346	1	STRG.22589.1,blat.proc3825158.chain_3347	2
scaffold_13	starts_in_intron	6852413	6852413	+	asmbl_10988	none	blat.proc3825172.chain_631	1	STRG.15976.1,blat.proc3825172.chain_630,blat.proc3825172.chain_632	3
scaffold_12	alt_acceptor	7351731	7351732	+	asmbl_7749	none	STRG.14815.1,blat.proc3825170.chain_3353	2	STRG.14815.2	1
scaffold_11	alt_acceptor	16613199	16613200	-	asmbl_7230	none	STRG.14347.2,blat.proc3825154.chain_2796	2	STRG.14347.1,blat.proc3825154.chain_2797	2
scaffold_11	retained_intron	17095575	17095790	+	asmbl_6193,asmbl_6195	none	STRG.14376.1,STRG.14376.2,blat.proc3825170.chain_2934	3	STRG.14376.3,blat.proc3825170.chain_2933	2
scaffold_18	ends_in_intron	5991314	5991314	+	asmbl_20647	none	blat.proc3825174.chain_2285	1	blat.proc3825174.chain_2286,blat.proc3825174.chain_2288,blat.proc3825174.chain_2289,blat.proc3825174.chain_2290,blat.proc3825174.chain_2291,blat.proc3825174.chain_2292,blat.proc3825174.chain_2293	7
scaffold_21	alternate_exon	7725836	7726193	+	asmbl_28767	none	STRG.24316.2	1	STRG.24316.3,blat.proc3825176.chain_1476	2
scaffold_4	alternate_exon	8088057	8090175	-	asmbl_42746	none	STRG.4625.1	1	STRG.4625.2,Trinity_GG_2590_c0_g1_i1,blat.proc3825150.chain_855	3
scaffold_8	retained_exon	4873092	4873125	+	asmbl_52870,asmbl_52872	none	STRG.9952.1,blat.proc3825168.chain_2516,blat.proc3825168.chain_2517	3	STRG.9952.2,STRG.9952.3,blat.proc3825168.chain_2518,blat.proc3825168.chain_2519	4
scaffold_21	starts_in_intron	983734	983734	+	asmbl_28317	none	blat.proc3825176.chain_914	1	STRG.23783.1	1
scaffold_6	alt_donor	16888616	16888617	-	asmbl_49174,asmbl_49175	none	STRG.8411.1,STRG.8411.2,Trinity_GG_4777_c0_g1_i2,Trinity_GG_4777_c0_g1_i4,blat.proc3825152.chain_819,blat.proc3825152.chain_820	6	STRG.8411.3,Trinity_GG_4777_c0_g1_i3,blat.proc3825152.chain_822	3
scaffold_8	skipped_exon	1339847	1341081	+	asmbl_52690	none	STRG.9765.1	1	blat.proc3825168.chain_2213	1
scaffold_9	starts_in_intron	17839583	17839583	-	asmbl_55690	none	blat.proc3825154.chain_364	1	STRG.11870.1,blat.proc3825154.chain_363	2
scaffold_15	alt_acceptor	16268616	16268617	-	asmbl_14825	none	blat.proc3825158.chain_78	1	STRG.18982.1,Trinity_GG_10644_c0_g1_i1,blat.proc3825158.chain_77	3
scaffold_23	starts_in_intron	7685833	7685833	+	asmbl_31713	none	STRG.26090.6	1	STRG.26090.2,STRG.26090.3,STRG.26090.4,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3053	7
scaffold_17	alt_acceptor	14546346	14546347	+	asmbl_19414	none	STRG.20928.2	1	STRG.20928.3	1
scaffold_13	spliced_intron	5208212	5208649	+	asmbl_10830	none	STRG.15826.1,Trinity_GG_26004_c0_g1_i1,blat.proc3825172.chain_551	3	Trinity_GG_26004_c0_g1_i2,blat.proc3825172.chain_552	2
scaffold_3	alternate_exon	3252532	3264843	+	asmbl_39939	none	STRG.3072.2	1	STRG.3072.4,STRG.3072.5	2
scaffold_17	starts_in_intron	677331	677331	+	asmbl_18555	none	Trinity_GG_28219_c0_g1_i4,blat.proc3825174.chain_803	2	STRG.19920.2,blat.proc3825174.chain_804,blat.proc3825174.chain_805	3
scaffold_7	retained_intron	12386811	12386895	-	asmbl_51205,asmbl_51208	none	blat.proc3825152.chain_1654,blat.proc3825152.chain_1658	2	blat.proc3825152.chain_1655,blat.proc3825152.chain_1657,blat.proc3825152.chain_1660,blat.proc3825152.chain_1661	4
scaffold_20	alt_donor	11380300	11380301	+	asmbl_27034,asmbl_27036,asmbl_27038	none	STRG.23648.1,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i1,blat.proc3825176.chain_757	5	STRG.23648.2,STRG.23648.3,STRG.23648.4,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_759	5
scaffold_11	retained_exon	4672820	4673002	-	asmbl_6609,asmbl_6615	none	STRG.13564.1,STRG.13564.5,blat.proc3825154.chain_2155	3	STRG.13564.2,STRG.13564.3,STRG.13564.4,blat.proc3825154.chain_2157,blat.proc3825154.chain_2158,blat.proc3825154.chain_2159	6
scaffold_27	retained_intron	3000638	3000932	+	asmbl_36160	none	blat.proc3825178.chain_1901	1	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	9
scaffold_17	spliced_intron	1304202	1304506	-	asmbl_17693,asmbl_17694,asmbl_17697,asmbl_17699,asmbl_17700	none	STRG.19975.1,STRG.19975.2,blat.proc3825158.chain_1029,blat.proc3825158.chain_1031,blat.proc3825158.chain_1032,blat.proc3825158.chain_1034,blat.proc3825158.chain_1035	7	blat.proc3825158.chain_1030	1
scaffold_7	retained_exon	4501324	4501379	-	asmbl_50864,asmbl_50865	none	STRG.8821.1,Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1303	3	STRG.8821.2,blat.proc3825152.chain_1302,blat.proc3825152.chain_1304	3
scaffold_1	alternate_exon	7097499	7097609	-	asmbl_410	none	blat.proc3825148.chain_493	1	STRG.503.1,blat.proc3825148.chain_492	2
scaffold_26	skipped_exon	1994935	1997416	+	asmbl_34728	none	STRG.27942.2	1	STRG.27942.1,blat.proc3825178.chain_995	2
scaffold_25	retained_exon	7342471	7343226	+	asmbl_33672	none	STRG.27589.2	1	STRG.27589.3	1
scaffold_5	retained_intron	15305751	15305837	+	asmbl_45987	none	STRG.6721.2	1	STRG.6721.1,Trinity_GG_20976_c0_g1_i1,Trinity_GG_20976_c0_g1_i2,blat.proc3825166.chain_2889,blat.proc3825166.chain_2890	5
scaffold_5	spliced_intron	10534403	10534505	-	asmbl_44360	none	STRG.6342.2,blat.proc3825150.chain_2542	2	blat.proc3825150.chain_2540	1
scaffold_21	alt_acceptor	4126164	4126165	+	asmbl_28512	none	STRG.23988.1	1	STRG.23988.2	1
scaffold_21	starts_in_intron	3191279	3191279	+	asmbl_28479	none	blat.proc3825176.chain_1094	1	STRG.23947.1,blat.proc3825176.chain_1092,blat.proc3825176.chain_1093	3
scaffold_2	starts_in_intron	10685782	10685782	+	asmbl_24719	none	STRG.2236.2,Trinity_GG_18569_c0_g1_i3,blat.proc3825164.chain_2421	3	STRG.2236.1,Trinity_GG_18569_c0_g1_i1,blat.proc3825164.chain_2420	3
scaffold_18	spliced_intron	8436469	8436543	-	asmbl_20011	none	STRG.21523.1,Trinity_GG_12033_c0_g1_i2,blat.proc3825158.chain_2423	3	STRG.21523.2,STRG.21523.3,blat.proc3825158.chain_2422	3
scaffold_5	starts_in_intron	10539326	10539326	-	asmbl_44366	none	blat.proc3825150.chain_2536	1	STRG.6340.1,STRG.6340.3,STRG.6340.4,Trinity_GG_3563_c0_g1_i4,Trinity_GG_3563_c0_g1_i7,blat.proc3825150.chain_2535,blat.proc3825150.chain_2537,blat.proc3825150.chain_2538	8
scaffold_17	retained_intron	3990087	3990195	-	asmbl_17836,asmbl_17838	none	STRG.20158.2,STRG.20158.4	2	STRG.20158.3,blat.proc3825158.chain_1211	2
scaffold_28	alternate_exon	2267628	2267846	-	asmbl_38029	none	blat.proc3825162.chain_2576	1	STRG.29401.1,STRG.29401.2,blat.proc3825162.chain_2575,blat.proc3825162.chain_2578,blat.proc3825162.chain_2579	5
scaffold_3	alt_acceptor	16072137	16072138	+	asmbl_40605	none	STRG.3889.2,blat.proc3825166.chain_376	2	STRG.3889.1,STRG.3889.3,blat.proc3825166.chain_374,blat.proc3825166.chain_375	4
scaffold_14	retained_exon	9071742	9071781	+	asmbl_12271	none	STRG.17319.1,blat.proc3825172.chain_2081	2	STRG.17319.2	1
scaffold_10	starts_in_intron	1292008	1292008	+	asmbl_2922	none	STRG.12028.3,Trinity_GG_23971_c0_g2_i1,blat.proc3825170.chain_724	3	STRG.12028.1,STRG.12028.2,blat.proc3825170.chain_725	3
scaffold_1	starts_in_intron	14833339	14833339	+	asmbl_2413	none	blat.proc3825164.chain_1241	1	STRG.1066.1,blat.proc3825164.chain_1242	2
scaffold_5	starts_in_intron	5893540	5893540	+	asmbl_45381	none	Trinity_GG_20598_c0_g1_i2,blat.proc3825166.chain_2235	2	STRG.6004.1,blat.proc3825166.chain_2236	2
scaffold_9	spliced_intron	12073542	12074636	-	asmbl_55351	none	STRG.11530.3,Trinity_GG_6349_c0_g1_i1,blat.proc3825152.chain_3733	3	STRG.11530.1,Trinity_GG_6349_c0_g1_i9,blat.proc3825152.chain_3738	3
scaffold_1	skipped_exon	6015395	6016010	+	asmbl_1820	none	blat.proc3825164.chain_567	1	STRG.408.1,blat.proc3825164.chain_565,blat.proc3825164.chain_566	3
scaffold_9	retained_exon	5296371	5296474	+	asmbl_54030	none	blat.proc3825168.chain_3571	1	STRG.11112.1,STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6
scaffold_10	retained_exon	6018625	6018961	-	asmbl_4416	none	STRG.12434.1,blat.proc3825154.chain_1008	2	blat.proc3825154.chain_1006	1
scaffold_8	alt_donor	5757276	5757277	+	asmbl_52905	none	STRG.9994.2	1	STRG.9994.1,Trinity_GG_22874_c0_g1_i1,blat.proc3825168.chain_2559	3
scaffold_23	retained_intron	7982619	7982719	+	asmbl_31747	none	blat.proc3825176.chain_3062	1	STRG.26109.1	1
scaffold_13	starts_in_intron	6609545	6609545	+	asmbl_10949	none	Trinity_GG_26063_c0_g2_i1,blat.proc3825172.chain_678	2	STRG.15951.2,STRG.15951.4,blat.proc3825172.chain_676	3
scaffold_10	retained_exon	13286680	13286774	-	asmbl_4871	none	blat.proc3825154.chain_1547	1	STRG.12922.2,STRG.12922.4,blat.proc3825154.chain_1545,blat.proc3825154.chain_1546	4
scaffold_19	skipped_exon	7703094	7703985	+	asmbl_21492	none	STRG.22255.3	1	STRG.22255.1,STRG.22255.2,Trinity_GG_29606_c0_g2_i1,blat.proc3825174.chain_3256,blat.proc3825174.chain_3257,blat.proc3825174.chain_3258	6
scaffold_14	alternate_exon	2299145	2299297	+	asmbl_11858	none	STRG.16845.1	1	STRG.16845.2	1
scaffold_7	alt_acceptor	129533	129534	-	asmbl_50665	none	STRG.8595.7	1	STRG.8595.2	1
scaffold_23	retained_exon	5863162	5863232	-	asmbl_30951	none	STRG.25971.1,Trinity_GG_14540_c0_g1_i3,blat.proc3825160.chain_3150	3	Trinity_GG_14540_c0_g1_i2,blat.proc3825160.chain_3151	2
scaffold_18	spliced_intron	7686561	7686884	+	asmbl_20777,asmbl_20778,asmbl_20780,asmbl_20786	none	STRG.21474.1,STRG.21474.4,Trinity_GG_29179_c0_g1_i11,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2510,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515	7	STRG.21474.3,STRG.21474.5,Trinity_GG_29179_c0_g1_i14,blat.proc3825174.chain_2511,blat.proc3825174.chain_2512,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518	7
scaffold_12	starts_in_intron	12288343	12288343	-	asmbl_8857	none	blat.proc3825154.chain_3607	1	STRG.15130.1,STRG.15130.2,STRG.15130.5	3
scaffold_23	spliced_intron	5182962	5183052	-	asmbl_30896	none	STRG.25899.2	1	STRG.25899.1,blat.proc3825160.chain_3053	2
scaffold_13	starts_in_intron	7370841	7370841	+	asmbl_11044	none	Trinity_GG_26104_c0_g1_i6,blat.proc3825172.chain_759	2	STRG.16037.1,Trinity_GG_26104_c0_g1_i3,blat.proc3825172.chain_758	3
scaffold_21	alt_donor	8231021	8231022	-	asmbl_27905	none	STRG.24361.2	1	STRG.24361.1,blat.proc3825160.chain_1526	2
scaffold_13	alt_acceptor	8026569	8026570	-	asmbl_9935	none	STRG.16086.2	1	STRG.16086.1,blat.proc3825156.chain_880,blat.proc3825156.chain_881	3
scaffold_16	retained_exon	125551	125642	+	asmbl_15996	none	STRG.19007.1,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3683	3	STRG.19007.2,STRG.19007.3,Trinity_GG_27742_c0_g1_i2,blat.proc3825172.chain_3685	4
scaffold_12	starts_in_intron	7962673	7962673	+	asmbl_7799	none	Trinity_GG_25497_c0_g1_i2,blat.proc3825170.chain_3357	2	STRG.14861.1,STRG.14861.2,blat.proc3825170.chain_3356,blat.proc3825170.chain_3358	4
scaffold_15	alt_donor	15435495	15435496	-	asmbl_14785	none	blat.proc3825156.chain_3728	1	STRG.18932.2,blat.proc3825156.chain_3731,blat.proc3825156.chain_3733	3
scaffold_10	ends_in_intron	5494843	5494843	-	asmbl_4366,asmbl_4367	none	blat.proc3825154.chain_926,blat.proc3825154.chain_927	2	STRG.12384.1,blat.proc3825154.chain_925	2
scaffold_1	ends_in_intron	5963894	5963894	+	asmbl_1808	none	blat.proc3825164.chain_542	1	STRG.400.1,STRG.400.2,STRG.400.3,blat.proc3825164.chain_540	4
scaffold_26	skipped_exon	2960900	2963885	-	asmbl_35462,asmbl_35463	none	STRG.27989.2,blat.proc3825162.chain_1300	2	STRG.27989.1,STRG.27989.3,STRG.27989.4,blat.proc3825162.chain_1299,blat.proc3825162.chain_1301,blat.proc3825162.chain_1303	6
scaffold_7	starts_in_intron	7787827	7787827	-	asmbl_50973	none	STRG.9029.1	1	blat.proc3825152.chain_1435	1
scaffold_8	starts_in_intron	4219049	4219049	+	asmbl_52823	none	Trinity_GG_22829_c0_g1_i1,blat.proc3825168.chain_2460	2	STRG.9898.1,blat.proc3825168.chain_2459	2
scaffold_21	alternate_exon	4106775	4106937	+	asmbl_28506,asmbl_28509	none	STRG.23987.1,STRG.23987.2,blat.proc3825176.chain_1207	3	STRG.23987.3,blat.proc3825176.chain_1205	2
scaffold_13	alt_acceptor	5025	5026	+	asmbl_10452	none	Trinity_GG_25787_c0_g1_i4,blat.proc3825172.chain_139	2	Trinity_GG_25787_c0_g1_i5,blat.proc3825172.chain_136	2
scaffold_23	retained_intron	5851943	5852135	+	asmbl_31601	none	STRG.25957.1,Trinity_GG_31586_c1_g1_i1,blat.proc3825176.chain_2807	3	STRG.25957.2,Trinity_GG_31586_c1_g1_i2,blat.proc3825176.chain_2808	3
scaffold_12	retained_intron	15048311	15048677	+	asmbl_8107	none	blat.proc3825170.chain_3702	1	STRG.15308.1,Trinity_GG_25685_c0_g1_i1,blat.proc3825170.chain_3701	3
scaffold_14	retained_exon	7295261	7295362	+	asmbl_12147,asmbl_12148,asmbl_12150	none	STRG.17169.1,blat.proc3825172.chain_1939,blat.proc3825172.chain_1941	3	STRG.17169.2,blat.proc3825172.chain_1940	2
scaffold_21	spliced_intron	6818680	6818878	+	asmbl_28702,asmbl_28704	none	STRG.24217.2,blat.proc3825176.chain_1369,blat.proc3825176.chain_1371	3	STRG.24217.1,Trinity_GG_30700_c0_g1_i3,blat.proc3825176.chain_1368,blat.proc3825176.chain_1370,blat.proc3825176.chain_1372	5
scaffold_15	starts_in_intron	15166465	15166465	+	asmbl_15724	none	blat.proc3825172.chain_3485	1	STRG.18905.1,STRG.18905.2,blat.proc3825172.chain_3484	3
scaffold_17	alt_donor	14633346	14633347	+	asmbl_19416	none	STRG.20943.3	1	STRG.20943.1,blat.proc3825174.chain_1755	2
scaffold_4	alt_acceptor	665698	665699	-	asmbl_42341	none	blat.proc3825150.chain_298	1	STRG.4141.1,blat.proc3825150.chain_297,blat.proc3825150.chain_299	3
scaffold_10	alt_acceptor	6072213	6072214	-	asmbl_4422,asmbl_4425,asmbl_4426,asmbl_4427,asmbl_4429,asmbl_4431,asmbl_4432	none	STRG.12445.1,STRG.12445.2,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033,blat.proc3825154.chain_1034	8	STRG.12445.3,blat.proc3825154.chain_1028	2
scaffold_15	alt_acceptor	9725628	9725629	+	asmbl_15403	none	STRG.18486.1,blat.proc3825172.chain_3072	2	STRG.18486.3	1
scaffold_12	ends_in_intron	5144179	5144179	-	asmbl_8490	none	Trinity_GG_8205_c0_g1_i3	1	STRG.14687.1,STRG.14687.2,blat.proc3825154.chain_3221,blat.proc3825154.chain_3224	4
scaffold_13	starts_in_intron	9325245	9325245	-	asmbl_10018	none	blat.proc3825156.chain_1012	1	STRG.16199.1,STRG.16199.4,blat.proc3825156.chain_1013	3
scaffold_20	retained_intron	1754144	1754228	+	asmbl_26451	none	STRG.22921.1,blat.proc3825176.chain_122	2	STRG.22921.3	1
scaffold_6	retained_intron	1497143	1498676	+	asmbl_46708	none	STRG.7191.1,Trinity_GG_21281_c0_g1_i2,Trinity_GG_21281_c1_g1_i1,blat.proc3825166.chain_3404,blat.proc3825166.chain_3405	5	STRG.7191.2,blat.proc3825166.chain_3406	2
scaffold_11	retained_intron	3767045	3767446	-	asmbl_6578	none	Trinity_GG_7568_c0_g1_i3,Trinity_GG_7568_c0_g1_i8	2	STRG.13508.1,STRG.13508.2,STRG.13508.3,STRG.13508.4,Trinity_GG_7568_c0_g1_i9,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	7
scaffold_10	skipped_exon	16821281	16823004	+	asmbl_3727	none	STRG.13127.2	1	STRG.13127.1	1
scaffold_11	retained_exon	4675629	4675850	-	asmbl_6609,asmbl_6616	none	STRG.13564.1,blat.proc3825154.chain_2155,blat.proc3825154.chain_2158	3	STRG.13564.2,STRG.13564.4,STRG.13564.5,blat.proc3825154.chain_2157	4
scaffold_8	starts_in_intron	11269824	11269824	-	asmbl_52143	none	Trinity_GG_5752_c0_g1_i1	1	STRG.10337.1,STRG.10337.2,STRG.10337.3,blat.proc3825152.chain_2577,blat.proc3825152.chain_2579	5
scaffold_12	ends_in_intron	9519563	9519563	-	asmbl_8676	none	blat.proc3825154.chain_3391	1	STRG.14929.1,blat.proc3825154.chain_3392	2
scaffold_28	ends_in_intron	2808721	2808721	-	asmbl_38091,asmbl_38092	none	STRG.29471.3,STRG.29471.4	2	STRG.29471.1,STRG.29471.2,blat.proc3825162.chain_2598,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	5
scaffold_26	alt_acceptor	1322077	1322078	-	asmbl_35402	none	blat.proc3825162.chain_1237	1	STRG.27913.3	1
scaffold_10	spliced_intron	13282361	13283064	-	asmbl_4866	none	STRG.12922.3	1	STRG.12922.1,STRG.12922.4,Trinity_GG_7237_c3_g1_i1,Trinity_GG_7237_c4_g1_i1,blat.proc3825154.chain_1550,blat.proc3825154.chain_1553,blat.proc3825154.chain_1554	7
scaffold_12	alternate_exon	2661590	2663777	+	asmbl_7504,asmbl_7505	none	STRG.14507.1,STRG.14507.3,Trinity_GG_25345_c0_g1_i8,Trinity_GG_25345_c1_g1_i1,blat.proc3825170.chain_3085,blat.proc3825170.chain_3087,blat.proc3825170.chain_3088,blat.proc3825170.chain_3090	8	blat.proc3825170.chain_3083	1
scaffold_5	retained_intron	10195272	10195388	-	asmbl_44320,asmbl_44325	none	STRG.6323.1,blat.proc3825150.chain_2532,blat.proc3825150.chain_2533	3	STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531	6
scaffold_28	alt_acceptor	4458496	4458497	+	asmbl_37534	none	STRG.29628.2,Trinity_GG_33736_c0_g1_i1,blat.proc3825178.chain_2805	3	STRG.29628.1	1
scaffold_8	retained_intron	4873126	4873930	+	asmbl_52867,asmbl_52868	none	STRG.9952.4,Trinity_GG_22853_c0_g1_i4,blat.proc3825168.chain_2514,blat.proc3825168.chain_2515	4	STRG.9952.1,blat.proc3825168.chain_2516,blat.proc3825168.chain_2517	3
scaffold_27	alt_acceptor	1961756	1961757	+	asmbl_36048,asmbl_36054	none	STRG.28677.1,blat.proc3825178.chain_1772,blat.proc3825178.chain_1775	3	STRG.28677.2,blat.proc3825178.chain_1771	2
scaffold_5	spliced_intron	5838814	5839033	-	asmbl_44058	none	STRG.5997.1,blat.proc3825150.chain_2206,blat.proc3825150.chain_2210	3	Trinity_GG_3378_c0_g1_i2,blat.proc3825150.chain_2209	2
scaffold_3	starts_in_intron	15925970	15925970	-	asmbl_39456	none	blat.proc3825148.chain_3695	1	STRG.3873.1,blat.proc3825148.chain_3694,blat.proc3825148.chain_3697	3
scaffold_15	starts_in_intron	14633806	14633806	-	asmbl_14735	none	blat.proc3825156.chain_3747	1	STRG.18877.1,blat.proc3825156.chain_3750	2
scaffold_23	skipped_exon	3447214	3449029	-	asmbl_30794	none	STRG.25764.1	1	STRG.25764.2,Trinity_GG_14434_c0_g1_i3	2
scaffold_5	retained_exon	15547270	15547539	-	asmbl_44699	none	STRG.6747.3	1	STRG.6747.1,STRG.6747.2,blat.proc3825150.chain_2941	3
scaffold_3	retained_exon	15785044	15785221	-	asmbl_39451	none	STRG.3859.2	1	STRG.3859.3	1
scaffold_3	ends_in_intron	14661566	14661566	+	asmbl_40540	none	STRG.3809.1	1	STRG.3809.2	1
scaffold_14	alt_acceptor	2464108	2464109	-	asmbl_12954	none	STRG.16856.3,blat.proc3825156.chain_1689	2	STRG.16856.1,STRG.16856.2,blat.proc3825156.chain_1687	3
scaffold_12	alt_donor	11335363	11335364	-	asmbl_8799	none	STRG.15074.1	1	STRG.15074.2	1
scaffold_5	ends_in_intron	13790024	13790024	-	asmbl_44558	none	Trinity_GG_3706_c0_g1_i1,blat.proc3825150.chain_2788	2	STRG.6591.2,blat.proc3825150.chain_2787	2
scaffold_2	skipped_exon	3632150	3633040	+	asmbl_24292	none	STRG.1787.2	1	STRG.1787.1,blat.proc3825164.chain_1919	2
scaffold_4	alt_donor	7090140	7090141	+	asmbl_41460	none	STRG.4547.3,blat.proc3825166.chain_1040	2	STRG.4547.2,STRG.4547.4,blat.proc3825166.chain_1039	3
scaffold_21	retained_exon	6638698	6638970	+	asmbl_28682	none	STRG.24190.1,blat.proc3825176.chain_1441	2	STRG.24190.2	1
scaffold_8	retained_exon	6809252	6809297	-	asmbl_51891	none	STRG.10044.3	1	STRG.10044.2,blat.proc3825152.chain_2307	2
scaffold_21	spliced_intron	7502207	7502569	-	asmbl_27830,asmbl_27831,asmbl_27833	none	STRG.24282.2,STRG.24282.3,blat.proc3825160.chain_1442	3	STRG.24282.1,STRG.24282.4,blat.proc3825160.chain_1441	3
scaffold_22	retained_intron	3532808	3532917	-	asmbl_29176	none	Trinity_GG_13860_c0_g1_i1	1	STRG.24801.1	1
scaffold_5	alt_acceptor	18719465	18719466	-	asmbl_44871	none	STRG.7001.1,blat.proc3825150.chain_3065	2	Trinity_GG_3866_c0_g1_i3,blat.proc3825150.chain_3066	2
scaffold_20	alt_acceptor	6746910	6746911	+	asmbl_26674	none	STRG.23251.1,blat.proc3825176.chain_420	2	STRG.23251.2	1
scaffold_12	starts_in_intron	976627	976627	-	asmbl_8284	none	blat.proc3825154.chain_2957	1	STRG.14442.1,STRG.14442.2,STRG.14442.3,STRG.14442.4,blat.proc3825154.chain_2955,blat.proc3825154.chain_2956,blat.proc3825154.chain_2958	7
scaffold_2	retained_intron	15267793	15267920	+	asmbl_24999	none	blat.proc3825164.chain_2603	1	blat.proc3825164.chain_2604	1
scaffold_15	alternate_exon	15443363	15443733	+	asmbl_15795	none	STRG.18935.2	1	Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3619,blat.proc3825172.chain_3626	4
scaffold_1	alt_acceptor	20134895	20134896	-	asmbl_1172	none	STRG.1386.1	1	STRG.1386.2,STRG.1386.5,STRG.1386.6	3
scaffold_8	alt_donor	10027593	10027594	-	asmbl_52090	none	STRG.10258.2	1	STRG.10258.1,blat.proc3825152.chain_2533	2
scaffold_11	ends_in_intron	3415260	3415260	+	asmbl_5430	none	STRG.13475.2	1	STRG.13475.1,blat.proc3825170.chain_2020	2
scaffold_10	alt_acceptor	8903911	8903912	-	asmbl_4638	none	STRG.12634.2,blat.proc3825154.chain_1248	2	STRG.12634.3,blat.proc3825154.chain_1247,blat.proc3825178.chain_3390	3
scaffold_19	alt_acceptor	8478147	8478148	-	asmbl_22301	none	STRG.22315.1,blat.proc3825158.chain_3033	2	STRG.22315.2,blat.proc3825158.chain_3032	2
scaffold_7	retained_exon	11412935	11413022	+	asmbl_50172	none	STRG.9288.3,Trinity_GG_22465_c0_g1_i4,blat.proc3825168.chain_1794,blat.proc3825168.chain_1795	4	STRG.9288.2	1
scaffold_26	ends_in_intron	1890499	1890499	-	asmbl_35421	none	blat.proc3825162.chain_1243	1	STRG.27936.1,blat.proc3825162.chain_1241,blat.proc3825162.chain_1242	3
scaffold_24	alt_donor	879811	879812	+	asmbl_32054	none	STRG.26371.3	1	STRG.26371.2	1
scaffold_4	alt_acceptor	14024304	14024305	-	asmbl_43029	none	STRG.5022.1,blat.proc3825150.chain_1158	2	STRG.5022.2	1
scaffold_27	spliced_intron	358421	358649	-	asmbl_36677	none	STRG.28564.1,Trinity_GG_15982_c0_g1_i2,blat.proc3825162.chain_1796	3	Trinity_GG_15982_c0_g1_i1,blat.proc3825162.chain_1795	2
scaffold_19	alt_acceptor	6791080	6791081	+	asmbl_21444	none	STRG.22197.2,blat.proc3825174.chain_3178	2	STRG.22197.1,blat.proc3825174.chain_3177	2
scaffold_11	spliced_intron	8716691	8716938	-	asmbl_6869	none	STRG.13902.1,blat.proc3825154.chain_2437	2	blat.proc3825154.chain_2439,blat.proc3825154.chain_2441	2
scaffold_1	alt_acceptor	20687704	20687705	-	asmbl_1188	none	blat.proc3825148.chain_1342	1	STRG.1410.1	1
scaffold_17	starts_in_intron	11327932	11327932	+	asmbl_19216	none	Trinity_GG_28652_c0_g1_i1,blat.proc3825174.chain_1572	2	STRG.20684.1,blat.proc3825174.chain_1571	2
scaffold_14	spliced_intron	1127545	1127620	+	asmbl_11809	none	STRG.16776.1,Trinity_GG_26533_c0_g1_i2,blat.proc3825172.chain_1529	3	STRG.16776.2,Trinity_GG_26533_c0_g1_i1,blat.proc3825172.chain_1530	3
scaffold_8	alt_donor	750956	750957	+	asmbl_52665	none	STRG.9728.2,blat.proc3825168.chain_2200	2	STRG.9728.1,blat.proc3825168.chain_2201	2
scaffold_5	retained_intron	18404543	18404691	+	asmbl_46261	none	blat.proc3825166.chain_3126	1	STRG.6977.1,blat.proc3825166.chain_3128	2
scaffold_17	alt_acceptor	14370809	14370810	+	asmbl_19398	none	STRG.20913.2	1	STRG.20913.1,Trinity_GG_28795_c0_g1_i2,blat.proc3825174.chain_1799	3
scaffold_12	alternate_exon	11210024	11210057	-	asmbl_8790	none	STRG.15065.1	1	STRG.15065.2	1
scaffold_7	spliced_intron	4544752	4545008	+	asmbl_49744,asmbl_49745,asmbl_49746	none	STRG.8829.1,blat.proc3825168.chain_1298,blat.proc3825168.chain_1299,blat.proc3825168.chain_1301	4	blat.proc3825168.chain_1300	1
scaffold_11	starts_in_intron	8719065	8719065	-	asmbl_6871	none	blat.proc3825154.chain_2436	1	STRG.13902.1,blat.proc3825154.chain_2437,blat.proc3825154.chain_2439	3
scaffold_25	starts_in_intron	5828451	5828451	-	asmbl_34295,asmbl_34296	none	blat.proc3825162.chain_874,blat.proc3825162.chain_877	2	STRG.27479.1,STRG.27479.2,STRG.27479.3,STRG.27479.4,Trinity_GG_15422_c0_g1_i7,blat.proc3825162.chain_875,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_879,blat.proc3825162.chain_880,blat.proc3825162.chain_881	11
scaffold_17	retained_exon	2355383	2355972	+	asmbl_18640	none	STRG.20030.2	1	blat.proc3825174.chain_909	1
scaffold_14	starts_in_intron	12328896	12328896	-	asmbl_13563	none	blat.proc3825156.chain_2392	1	STRG.17560.1,STRG.17560.2,blat.proc3825156.chain_2395	3
scaffold_2	ends_in_intron	13897323	13897323	-	asmbl_23540	none	blat.proc3825148.chain_2391	1	STRG.2384.1,STRG.2384.2,blat.proc3825148.chain_2389,blat.proc3825148.chain_2392	4
scaffold_27	retained_intron	128244	128281	-	asmbl_36637	none	STRG.28543.3	1	STRG.28543.2,Trinity_GG_15985_c0_g1_i5,Trinity_GG_15985_c0_g1_i6,blat.proc3825162.chain_1801,blat.proc3825162.chain_1802	5
scaffold_17	retained_intron	11034956	11035084	-	asmbl_18264	none	blat.proc3825158.chain_1638	1	STRG.20664.1,STRG.20664.2,STRG.20664.3,STRG.20664.4,blat.proc3825158.chain_1639	5
scaffold_10	retained_intron	9546459	9546855	+	asmbl_3400	none	Trinity_GG_24296_c1_g1_i1,blat.proc3825170.chain_1288	2	STRG.12711.4	1
scaffold_15	ends_in_intron	12040697	12040697	+	asmbl_15518	none	blat.proc3825172.chain_3250	1	STRG.18663.1,STRG.18663.2	2
scaffold_26	alt_donor	9033647	9033648	+	asmbl_35199	none	STRG.28470.2,Trinity_GG_33065_c0_g1_i1,blat.proc3825178.chain_1592	3	STRG.28470.1,Trinity_GG_33065_c0_g1_i3,blat.proc3825178.chain_1591	3
scaffold_23	alt_acceptor	360402	360403	-	asmbl_30600	none	STRG.25564.2	1	STRG.25564.1,STRG.25564.3,STRG.25564.4,Trinity_GG_14303_c0_g1_i3,Trinity_GG_14303_c0_g1_i4,Trinity_GG_14303_c0_g1_i9,blat.proc3825160.chain_2720,blat.proc3825160.chain_2721,blat.proc3825160.chain_2722,blat.proc3825160.chain_2723,blat.proc3825160.chain_2724,blat.proc3825160.chain_2725,blat.proc3825160.chain_2726,blat.proc3825160.chain_2727,blat.proc3825160.chain_2728	15
scaffold_6	alt_donor	4713262	4713263	+	asmbl_46897	none	STRG.7460.1,Trinity_GG_21386_c0_g1_i2,blat.proc3825166.chain_3644	3	STRG.7460.2,STRG.7460.4,Trinity_GG_21386_c0_g1_i1,Trinity_GG_21386_c0_g1_i3,blat.proc3825166.chain_3643,blat.proc3825166.chain_3645	6
scaffold_9	alt_acceptor	11209	11210	-	asmbl_54793	none	STRG.10758.2	1	STRG.10758.1,Trinity_GG_5989_c0_g1_i1,blat.proc3825152.chain_3051	3
scaffold_28	spliced_intron	58885	58965	-	asmbl_37881,asmbl_37885,asmbl_37886,asmbl_37887	none	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2400,blat.proc3825162.chain_2401,blat.proc3825162.chain_2402	5	Trinity_GG_16368_c0_g1_i4,blat.proc3825162.chain_2398	2
scaffold_1	spliced_intron	13890935	13891127	+	asmbl_2320,asmbl_2322,asmbl_2326,asmbl_2327	none	STRG.997.2,STRG.997.3,STRG.997.4,blat.proc3825164.chain_1165,blat.proc3825164.chain_1167,blat.proc3825164.chain_1170	6	STRG.997.1,blat.proc3825164.chain_1168,blat.proc3825164.chain_1169	3
scaffold_2	retained_intron	14559023	14559185	+	asmbl_24949	none	blat.proc3825164.chain_2651	1	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11
scaffold_21	alt_donor	1286220	1286221	-	asmbl_27403	none	STRG.23804.2	1	STRG.23804.1,Trinity_GG_13269_c0_g1_i1,blat.proc3825160.chain_937	3
scaffold_4	alt_acceptor	16912491	16912492	+	asmbl_42008,asmbl_42009	none	STRG.5280.1,STRG.5280.2	2	STRG.5280.3	1
scaffold_23	retained_intron	10938115	10938227	-	asmbl_31176	none	Trinity_GG_14694_c0_g1_i2,Trinity_GG_14694_c0_g1_i3,Trinity_GG_14694_c0_g1_i4	3	STRG.26299.3	1
scaffold_20	alternate_exon	6652518	6655138	-	asmbl_25846	none	blat.proc3825160.chain_348,blat.proc3825160.chain_352	2	Trinity_GG_12978_c1_g1_i2,blat.proc3825160.chain_353	2
scaffold_20	ends_in_intron	9784247	9784247	+	asmbl_26899	none	blat.proc3825176.chain_650	1	STRG.23522.1,blat.proc3825176.chain_651	2
scaffold_1	retained_intron	7814234	7814497	+	asmbl_1923	none	STRG.539.1,blat.proc3825164.chain_705	2	STRG.539.3	1
scaffold_3	retained_intron	11526115	11526216	+	asmbl_40360	none	Trinity_GG_19328_c1_g1_i1,blat.proc3825166.chain_83	2	STRG.3584.1,Trinity_GG_19328_c1_g1_i2,blat.proc3825166.chain_82	3
scaffold_17	ends_in_intron	10041671	10041671	-	asmbl_18227	none	blat.proc3825158.chain_1661	1	STRG.20617.1,blat.proc3825158.chain_1660	2
scaffold_21	starts_in_intron	9867235	9867235	-	asmbl_27978	none	STRG.24445.1	1	STRG.24445.2	1
scaffold_8	starts_in_intron	16040174	16040174	-	asmbl_52350	none	blat.proc3825152.chain_2821	1	STRG.10585.1,STRG.10585.2,STRG.10585.3,blat.proc3825152.chain_2822,blat.proc3825152.chain_2823	5
scaffold_27	alt_donor	2814408	2814409	+	asmbl_36123	none	STRG.28763.3	1	STRG.28763.1,STRG.28763.2,STRG.28763.4,Trinity_GG_33230_c1_g1_i2,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1925,blat.proc3825178.chain_1927	8
scaffold_8	retained_exon	16503359	16503451	-	asmbl_52405,asmbl_52419,asmbl_52420	none	STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	5	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,Trinity_GG_5934_c0_g1_i12,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2935,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	13
scaffold_14	starts_in_intron	15256225	15256225	+	asmbl_12584	none	STRG.17757.3	1	STRG.17757.2	1
scaffold_2	retained_exon	14014162	14014256	-	asmbl_23556	none	STRG.2395.1,Trinity_GG_1332_c0_g1_i1,blat.proc3825148.chain_2398	3	STRG.2395.2,Trinity_GG_1332_c0_g1_i2,blat.proc3825148.chain_2399	3
scaffold_7	spliced_intron	4545173	4545914	+	asmbl_49744,asmbl_49745,asmbl_49746	none	STRG.8829.1,blat.proc3825168.chain_1298,blat.proc3825168.chain_1299,blat.proc3825168.chain_1301	4	blat.proc3825168.chain_1300	1
scaffold_20	retained_intron	5180977	5181010	+	asmbl_26609	none	STRG.23156.2	1	STRG.23156.1	1
scaffold_8	spliced_intron	10059073	10059152	-	asmbl_52095,asmbl_52096	none	STRG.10265.1,STRG.10265.2,blat.proc3825152.chain_2447,blat.proc3825152.chain_2448	4	Trinity_GG_5681_c0_g1_i1,blat.proc3825152.chain_2446	2
scaffold_2	retained_exon	2987706	2987819	+	asmbl_24264	none	STRG.1735.1,Trinity_GG_18303_c1_g1_i1,blat.proc3825164.chain_1908	3	STRG.1735.2,Trinity_GG_18303_c1_g1_i2,blat.proc3825164.chain_1909	3
scaffold_22	starts_in_intron	7892205	7892205	-	asmbl_29435	none	blat.proc3825160.chain_2307	1	STRG.25146.1,STRG.25146.2,blat.proc3825160.chain_2306,blat.proc3825160.chain_2308	4
scaffold_11	alt_acceptor	15631291	15631292	+	asmbl_6116,asmbl_6117,asmbl_6118	none	STRG.14299.1,blat.proc3825170.chain_2833,blat.proc3825170.chain_2834,blat.proc3825170.chain_2835	4	STRG.14299.2	1
scaffold_22	alt_acceptor	1013479	1013480	-	asmbl_29140	none	STRG.24755.1,blat.proc3825160.chain_1945	2	STRG.24755.2,blat.proc3825160.chain_1946	2
scaffold_5	alternate_exon	8135816	8136318	+	asmbl_45535	none	STRG.6190.3,blat.proc3825166.chain_2397	2	STRG.6190.1,STRG.6190.2,blat.proc3825166.chain_2396,blat.proc3825166.chain_2398	4
scaffold_4	alternate_exon	19604625	19604856	-	asmbl_43469,asmbl_43470	none	STRG.5550.1,STRG.5550.2	2	STRG.5550.4	1
scaffold_16	alt_donor	5447747	5447748	-	asmbl_17105	none	STRG.19301.3	1	STRG.19301.1,STRG.19301.2,Trinity_GG_10851_c1_g1_i1,blat.proc3825158.chain_458	4
scaffold_15	alt_acceptor	8165667	8165668	+	asmbl_15320	none	STRG.18391.1,blat.proc3825172.chain_3002	2	STRG.18391.2	1
scaffold_8	starts_in_intron	14389490	14389490	-	asmbl_52307,asmbl_52309	none	Trinity_GG_5795_c0_g1_i6,blat.proc3825152.chain_2656,blat.proc3825152.chain_2657	3	STRG.10525.1,STRG.10525.2,blat.proc3825152.chain_2658,blat.proc3825152.chain_2659,blat.proc3825152.chain_2661	5
scaffold_1	spliced_intron	12333296	12334265	-	asmbl_708,asmbl_709,asmbl_714,asmbl_715,asmbl_716	none	STRG.849.1,blat.proc3825148.chain_825,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	6	STRG.849.2,STRG.849.3,Trinity_GG_444_c0_g1_i7,blat.proc3825148.chain_830,blat.proc3825148.chain_831	5
scaffold_19	alternate_exon	3683357	3683525	+	asmbl_21336	none	STRG.22058.5	1	STRG.22058.1,STRG.22058.3	2
scaffold_8	alt_donor	5856524	5856525	+	asmbl_52910,asmbl_52912	none	STRG.10001.4,Trinity_GG_22886_c0_g1_i3,Trinity_GG_22886_c0_g1_i5,blat.proc3825168.chain_2572,blat.proc3825168.chain_2574	5	STRG.10001.1,STRG.10001.2,STRG.10001.3,Trinity_GG_22886_c0_g1_i1,Trinity_GG_22886_c0_g1_i2,Trinity_GG_22886_c0_g1_i4,blat.proc3825168.chain_2571,blat.proc3825168.chain_2573,blat.proc3825168.chain_2575	9
scaffold_22	alt_acceptor	6874718	6874719	+	asmbl_30133	none	STRG.25004.1,blat.proc3825176.chain_2137	2	STRG.25004.2,blat.proc3825176.chain_2135	2
scaffold_10	starts_in_intron	13629587	13629587	-	asmbl_4919	none	blat.proc3825154.chain_1606	1	STRG.12963.1,blat.proc3825154.chain_1603	2
scaffold_20	retained_exon	11567538	11567899	+	asmbl_27075	none	STRG.23663.2,Trinity_GG_30414_c0_g1_i1,blat.proc3825176.chain_870	3	STRG.23663.1,blat.proc3825176.chain_868,blat.proc3825176.chain_869	3
scaffold_11	alternate_exon	3092415	3092496	+	asmbl_5401	none	STRG.13431.3	1	STRG.13431.1	1
scaffold_26	alt_donor	968977	968978	-	asmbl_35395	none	STRG.27894.1,blat.proc3825162.chain_1220	2	STRG.27894.2	1
scaffold_1	spliced_intron	15303957	15304040	+	asmbl_2440	none	STRG.1099.1,Trinity_GG_17981_c0_g1_i2,blat.proc3825164.chain_1286	3	Trinity_GG_17981_c0_g1_i1,blat.proc3825164.chain_1287	2
scaffold_21	alternate_exon	10503622	10503792	-	asmbl_28054	none	STRG.24523.1	1	STRG.24523.2,STRG.24523.3,blat.proc3825160.chain_1747	3
scaffold_23	alternate_exon	4158575	4158622	+	asmbl_31487	none	STRG.25830.2,Trinity_GG_31557_c0_g1_i1,blat.proc3825176.chain_2758	3	STRG.25830.1,Trinity_GG_31557_c0_g1_i2,blat.proc3825176.chain_2759	3
scaffold_1	alternate_exon	9962780	9963923	-	asmbl_570	none	STRG.663.1,blat.proc3825148.chain_663	2	STRG.663.2,blat.proc3825148.chain_664	2
scaffold_10	alt_donor	3928120	3928121	-	asmbl_4239,asmbl_4240,asmbl_4241,asmbl_4245	none	STRG.12235.1,STRG.12235.2,STRG.12235.4,blat.proc3825154.chain_797,blat.proc3825154.chain_798,blat.proc3825154.chain_800,blat.proc3825154.chain_802	7	STRG.12235.3,blat.proc3825154.chain_801	2
scaffold_500	spliced_intron	4922	5037	+	asmbl_46498	none	blat.proc3825178.chain_3447	1	blat.proc3825178.chain_3442	1
scaffold_9	alt_acceptor	3414002	3414003	-	asmbl_54902,asmbl_54905	none	STRG.10955.1,blat.proc3825152.chain_3205	2	STRG.10955.3,blat.proc3825152.chain_3203	2
scaffold_15	alt_acceptor	6957099	6957100	-	asmbl_14272	none	STRG.18300.2,blat.proc3825156.chain_3147	2	STRG.18300.3	1
scaffold_20	spliced_intron	253640	254205	-	asmbl_25477	none	STRG.22719.4	1	STRG.22719.1	1
scaffold_26	ends_in_intron	8587539	8587539	-	asmbl_35737	none	STRG.28448.3,blat.proc3825162.chain_1627	2	STRG.28448.1,Trinity_GG_15890_c0_g1_i1,blat.proc3825162.chain_1628	3
scaffold_15	alt_acceptor	12000429	12000430	-	asmbl_14546,asmbl_14547,asmbl_14552	none	STRG.18639.2,STRG.18639.3,STRG.18639.6,Trinity_GG_10485_c0_g1_i3,Trinity_GG_10485_c0_g1_i6,blat.proc3825156.chain_3529,blat.proc3825156.chain_3531	7	STRG.18639.1,STRG.18639.4,Trinity_GG_10485_c0_g1_i2,blat.proc3825156.chain_3534	4
scaffold_321	starts_in_intron	4898	4898	-	asmbl_40957	none	STRG.30277.2	1	STRG.30277.1,Trinity_GG_16988_c0_g1_i3,blat.proc3825162.chain_3408	3
scaffold_20	retained_intron	5923668	5924973	-	asmbl_25788,asmbl_25789	none	STRG.23199.1,STRG.23199.2,Trinity_GG_12941_c0_g1_i5,blat.proc3825160.chain_277,blat.proc3825160.chain_281	5	STRG.23199.3,blat.proc3825160.chain_278,blat.proc3825160.chain_279,blat.proc3825160.chain_280	4
scaffold_21	skipped_exon	5773985	5776476	-	asmbl_27691,asmbl_27694,asmbl_27695	none	STRG.24114.1,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200	4	STRG.24114.2,STRG.24114.3,blat.proc3825160.chain_1203	3
scaffold_8	starts_in_intron	16651161	16651161	+	asmbl_53462	none	Trinity_GG_23238_c1_g1_i1,Trinity_GG_23238_c1_g1_i2,blat.proc3825168.chain_3216,blat.proc3825168.chain_3218	4	STRG.10637.1,blat.proc3825168.chain_3217	2
scaffold_13	retained_intron	4077097	4077213	+	asmbl_10755	none	STRG.15729.2,Trinity_GG_25948_c0_g1_i1,blat.proc3825172.chain_456	3	STRG.15729.1	1
scaffold_22	alternate_exon	11421458	11421491	+	asmbl_30384	none	STRG.25488.2,Trinity_GG_31372_c0_g1_i1,blat.proc3825176.chain_2463	3	STRG.25488.1,Trinity_GG_31372_c0_g1_i2,blat.proc3825176.chain_2462	3
scaffold_1	spliced_intron	5739762	5739896	+	asmbl_1775,asmbl_1776,asmbl_1777,asmbl_1778,asmbl_1779,asmbl_1780,asmbl_1781,asmbl_1782	none	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528,blat.proc3825164.chain_529,blat.proc3825164.chain_530	8	Trinity_GG_17568_c1_g1_i1,blat.proc3825164.chain_532	2
scaffold_21	spliced_intron	10848260	10848466	-	asmbl_28078	none	STRG.24556.2,blat.proc3825160.chain_1785	2	STRG.24556.1,blat.proc3825160.chain_1786	2
scaffold_4	alt_acceptor	4426554	4426555	-	asmbl_42512,asmbl_42513,asmbl_42514	none	STRG.4343.1,STRG.4343.3,blat.proc3825150.chain_580,blat.proc3825150.chain_581,blat.proc3825150.chain_582	5	STRG.4343.2	1
scaffold_21	alt_donor	8182157	8182158	+	asmbl_28795	none	STRG.24352.2	1	STRG.24352.1,blat.proc3825176.chain_1546	2
scaffold_1	ends_in_intron	18524215	18524215	-	asmbl_1123	none	blat.proc3825148.chain_1256	1	STRG.1303.2,blat.proc3825148.chain_1255	2
scaffold_25	retained_exon	9940568	9940619	-	asmbl_34531	none	STRG.27806.1	1	STRG.27806.2	1
scaffold_10	skipped_exon	2658614	2659095	-	asmbl_4112	none	STRG.12078.1,Trinity_GG_6726_c0_g1_i2,blat.proc3825154.chain_632	3	STRG.12078.2	1
scaffold_27	starts_in_intron	2048862	2048862	+	asmbl_36064	none	blat.proc3825178.chain_1810	1	STRG.28688.1,blat.proc3825178.chain_1809,blat.proc3825178.chain_1811	3
scaffold_13	alternate_exon	11586208	11586913	+	asmbl_11284,asmbl_11285	none	STRG.16316.6,blat.proc3825172.chain_1031	2	STRG.16316.1,STRG.16316.5,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035	5
scaffold_17	alternate_exon	787105	787228	+	asmbl_18574	none	STRG.19934.1	1	STRG.19934.2,blat.proc3825174.chain_823	2
scaffold_11	ends_in_intron	15834158	15834158	+	asmbl_6137	none	Trinity_GG_25173_c0_g1_i4	1	STRG.14321.1,STRG.14321.2,blat.proc3825170.chain_2797,blat.proc3825170.chain_2798,blat.proc3825170.chain_2800	5
scaffold_4	ends_in_intron	8081170	8081170	+	asmbl_41535	none	blat.proc3825166.chain_1101	1	STRG.4627.1,STRG.4627.2,blat.proc3825166.chain_1102	3
scaffold_6	starts_in_intron	5196334	5196334	+	asmbl_46918,asmbl_46923,asmbl_46924,asmbl_46925	none	STRG.7496.5,STRG.7496.6,blat.proc3825166.chain_3547,blat.proc3825166.chain_3548	4	STRG.7496.1,STRG.7496.2,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i16,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3554,blat.proc3825166.chain_3556	10
scaffold_10	retained_intron	2777398	2777531	+	asmbl_3014	none	STRG.12098.2,blat.proc3825170.chain_851	2	STRG.12098.1,blat.proc3825170.chain_852	2
scaffold_25	spliced_intron	3186833	3186999	-	asmbl_34111,asmbl_34112	none	STRG.27258.1,blat.proc3825162.chain_577,blat.proc3825162.chain_578	3	STRG.27258.2,STRG.27258.3,blat.proc3825162.chain_576	3
scaffold_19	alt_donor	10303465	10303466	+	asmbl_21645	none	STRG.22416.1,blat.proc3825174.chain_3424	2	STRG.22416.4,Trinity_GG_29710_c0_g1_i3,blat.proc3825174.chain_3426	3
scaffold_16	alt_acceptor	409427	409428	-	asmbl_16864,asmbl_16865	none	STRG.19031.1,blat.proc3825158.chain_163,blat.proc3825158.chain_164	3	blat.proc3825158.chain_165	1
scaffold_8	alt_acceptor	9374182	9374183	-	asmbl_52026	none	STRG.10202.5	1	STRG.10202.3,STRG.10202.4,STRG.10202.6,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463,blat.proc3825152.chain_2464	6
scaffold_7	ends_in_intron	8209966	8209966	+	asmbl_49970	none	blat.proc3825168.chain_1539	1	STRG.9055.1,blat.proc3825168.chain_1537	2
scaffold_20	starts_in_intron	4356030	4356030	+	asmbl_26577	none	blat.proc3825176.chain_287	1	STRG.23115.1,STRG.23115.2,blat.proc3825176.chain_288	3
scaffold_12	alt_donor	9930704	9930705	+	asmbl_7894	none	STRG.14964.1,blat.proc3825170.chain_3445	2	STRG.14964.2,blat.proc3825170.chain_3446	2
scaffold_12	starts_in_intron	10575695	10575695	+	asmbl_7937	none	blat.proc3825170.chain_3592	1	STRG.15028.1,blat.proc3825170.chain_3594	2
scaffold_28	spliced_intron	5391084	5391169	+	asmbl_37583,asmbl_37588	none	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,blat.proc3825178.chain_2869	4	STRG.29687.4,Trinity_GG_33768_c0_g1_i8,blat.proc3825178.chain_2867,blat.proc3825178.chain_2870	4
scaffold_12	alternate_exon	12303797	12303940	-	asmbl_8867	none	STRG.15132.2	1	STRG.15132.1	1
scaffold_22	alt_donor	5934298	5934299	+	asmbl_30072	none	STRG.24944.1	1	STRG.24944.2	1
scaffold_15	retained_exon	2990689	2990754	-	asmbl_14068	none	STRG.18083.2,blat.proc3825156.chain_2907	2	STRG.18083.1,blat.proc3825156.chain_2909	2
scaffold_1	retained_intron	18749948	18749977	-	asmbl_1129	none	STRG.1309.3,Trinity_GG_674_c0_g1_i3,blat.proc3825148.chain_1260	3	STRG.1309.1	1
scaffold_12	spliced_intron	14173452	14174310	+	asmbl_8068	none	blat.proc3825172.chain_2	1	STRG.15252.1,STRG.15252.2,STRG.15252.3,Trinity_GG_25713_c0_g1_i9,blat.proc3825172.chain_3,blat.proc3825172.chain_5,blat.proc3825172.chain_6	7
scaffold_9	retained_exon	16564428	16565837	-	asmbl_55580,asmbl_55581,asmbl_55582,asmbl_55583	none	STRG.11806.3,STRG.11806.4,STRG.11806.5,STRG.11806.6,Trinity_GG_6524_c0_g1_i10,blat.proc3825154.chain_268	6	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_271,blat.proc3825154.chain_274	6
scaffold_1	retained_exon	12978049	12978105	+	asmbl_2287,asmbl_2292	none	STRG.935.1,blat.proc3825164.chain_1042,blat.proc3825164.chain_1047	3	blat.proc3825164.chain_1044	1
scaffold_18	alt_donor	7521970	7521971	+	asmbl_20745	none	STRG.21453.1,Trinity_GG_29154_c0_g1_i1,blat.proc3825174.chain_2475	3	STRG.21453.2,Trinity_GG_29154_c0_g1_i2,blat.proc3825174.chain_2476	3
scaffold_2	ends_in_intron	10880331	10880331	+	asmbl_24740	none	Trinity_GG_18581_c0_g1_i3,blat.proc3825164.chain_2439	2	STRG.2245.1,STRG.2245.2,Trinity_GG_18581_c0_g1_i4,Trinity_GG_18581_c0_g1_i6,blat.proc3825164.chain_2437,blat.proc3825164.chain_2438,blat.proc3825164.chain_2441	7
scaffold_7	ends_in_intron	12269958	12269958	+	asmbl_50236	none	Trinity_GG_22467_c1_g1_i1,blat.proc3825168.chain_1807	2	STRG.9326.3,STRG.9326.4,Trinity_GG_22467_c0_g1_i1,Trinity_GG_22467_c0_g1_i3,Trinity_GG_22467_c0_g1_i4,Trinity_GG_22467_c0_g1_i5,blat.proc3825168.chain_1798,blat.proc3825168.chain_1801,blat.proc3825168.chain_1802	9
scaffold_19	retained_exon	12956212	12956267	-	asmbl_22564,asmbl_22565,asmbl_22566,asmbl_22568	none	STRG.22612.1,Trinity_GG_12582_c0_g1_i4,Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3403,blat.proc3825158.chain_3404	7	Trinity_GG_12582_c0_g1_i2,blat.proc3825158.chain_3401	2
scaffold_15	skipped_exon	1962523	1963918	+	asmbl_15040,asmbl_15041	none	STRG.17992.1,STRG.17992.2	2	STRG.17992.3	1
scaffold_3	ends_in_intron	14432362	14432362	-	asmbl_39374	none	Trinity_GG_2047_c0_g1_i7,blat.proc3825148.chain_3611	2	STRG.3785.1,STRG.3785.2,Trinity_GG_2047_c0_g1_i2,Trinity_GG_2047_c0_g1_i6,blat.proc3825148.chain_3609,blat.proc3825148.chain_3610	6
scaffold_14	spliced_intron	2122954	2123146	-	asmbl_12919,asmbl_12922	none	STRG.16836.1,blat.proc3825156.chain_1672,blat.proc3825156.chain_1673	3	Trinity_GG_9442_c1_g1_i1,blat.proc3825156.chain_1675	2
scaffold_27	retained_intron	4961885	4961915	+	asmbl_36333	none	Trinity_GG_33328_c0_g1_i1	1	STRG.28931.1	1
scaffold_16	alt_donor	8589758	8589759	+	asmbl_16416,asmbl_16420,asmbl_16424	none	STRG.19490.1,STRG.19490.3,blat.proc3825174.chain_372,blat.proc3825174.chain_373	4	STRG.19490.2,STRG.19490.7,blat.proc3825174.chain_375	3
scaffold_25	retained_intron	3725793	3725904	+	asmbl_33459	none	STRG.27323.3	1	STRG.27323.1,STRG.27323.2,blat.proc3825178.chain_408,blat.proc3825178.chain_409	4
scaffold_21	retained_intron	1300424	1301225	-	asmbl_27404,asmbl_27405,asmbl_27407	none	STRG.23810.1,STRG.23810.3,Trinity_GG_13281_c0_g1_i2,Trinity_GG_13281_c0_g1_i3,blat.proc3825160.chain_949,blat.proc3825160.chain_951	6	STRG.23810.4,STRG.23810.5,Trinity_GG_13281_c0_g1_i1,blat.proc3825160.chain_950	4
scaffold_3	spliced_intron	13648767	13648874	-	asmbl_39275	none	STRG.3709.2,Trinity_GG_2039_c0_g1_i1,blat.proc3825148.chain_3600	3	STRG.3709.1,Trinity_GG_2039_c0_g1_i2,blat.proc3825148.chain_3601	3
scaffold_16	spliced_intron	11394881	11395273	-	asmbl_17341	none	STRG.19673.3	1	STRG.19673.1,STRG.19673.4,STRG.19673.6,Trinity_GG_11017_c3_g1_i1,blat.proc3825158.chain_729	5
scaffold_11	skipped_exon	4332758	4334217	-	asmbl_6596,asmbl_6598	none	STRG.13525.1,blat.proc3825154.chain_2133,blat.proc3825154.chain_2135	3	STRG.13525.2	1
scaffold_19	alt_donor	827889	827890	-	asmbl_22009,asmbl_22011	none	STRG.21882.5,blat.proc3825158.chain_2702	2	STRG.21882.1,STRG.21882.2,blat.proc3825158.chain_2705	3
scaffold_2	alt_acceptor	9862332	9862333	-	asmbl_23396	none	STRG.2188.3	1	STRG.2188.1,blat.proc3825148.chain_2216	2
scaffold_16	retained_intron	6534625	6536084	+	asmbl_16309	none	STRG.19378.1,Trinity_GG_27918_c0_g1_i1,Trinity_GG_27918_c0_g1_i4,blat.proc3825174.chain_289,blat.proc3825174.chain_291	5	STRG.19378.2,Trinity_GG_27918_c0_g1_i2,blat.proc3825174.chain_290	3
scaffold_7	retained_intron	4047076	4047197	-	asmbl_50849	none	blat.proc3825152.chain_1274	1	STRG.8803.3,blat.proc3825152.chain_1276	2
scaffold_25	retained_intron	3712653	3712743	-	asmbl_34150	none	blat.proc3825162.chain_689	1	STRG.27321.1,blat.proc3825162.chain_688	2
scaffold_8	spliced_intron	9122376	9122775	-	asmbl_52003,asmbl_52004	none	STRG.10168.1,STRG.10168.2,blat.proc3825152.chain_2442,blat.proc3825152.chain_2443	4	Trinity_GG_5679_c1_g1_i1,blat.proc3825152.chain_2444	2
scaffold_43	retained_intron	782	922	-	asmbl_43696	none	STRG.30047.1	1	STRG.30047.7	1
scaffold_7	spliced_intron	6655482	6656656	-	asmbl_50930,asmbl_50931,asmbl_50932	none	STRG.8943.1,blat.proc3825152.chain_1403,blat.proc3825152.chain_1405,blat.proc3825152.chain_1407	4	STRG.8943.2,Trinity_GG_5086_c0_g1_i5,blat.proc3825152.chain_1404	3
scaffold_18	starts_in_intron	13113043	13113043	+	asmbl_20995	none	blat.proc3825174.chain_2741	1	STRG.21750.1,STRG.21750.2,STRG.21750.3,blat.proc3825174.chain_2742,blat.proc3825174.chain_2743	5
scaffold_21	starts_in_intron	3769007	3769007	-	asmbl_27535	none	blat.proc3825160.chain_1094	1	STRG.23970.1,STRG.23970.2	2
scaffold_12	alternate_exon	4723970	4724237	-	asmbl_8435	none	STRG.14649.4	1	STRG.14649.5,blat.proc3825154.chain_3100,blat.proc3825154.chain_3101	3
scaffold_13	retained_intron	12253907	12254148	+	asmbl_11347	none	STRG.16359.2,Trinity_GG_26285_c0_g1_i3,blat.proc3825172.chain_1112	3	STRG.16359.1,STRG.16359.3,STRG.16359.4,Trinity_GG_26285_c0_g1_i1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1113,blat.proc3825172.chain_1114,blat.proc3825172.chain_1115	8
scaffold_5	spliced_intron	9086221	9086396	+	asmbl_45599,asmbl_45602,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	7	Trinity_GG_20732_c0_g1_i3,blat.proc3825166.chain_2478	2
scaffold_9	spliced_intron	8399726	8399808	-	asmbl_55127	none	STRG.11262.1,blat.proc3825152.chain_3490	2	STRG.11262.2	1
scaffold_22	alt_donor	7898489	7898490	-	asmbl_29437	none	STRG.25137.2,blat.proc3825160.chain_2266	2	STRG.25137.1	1
scaffold_6	spliced_intron	8460271	8460406	+	asmbl_47128	none	STRG.7725.3	1	STRG.7725.1,STRG.7725.4,blat.proc3825168.chain_154	3
scaffold_14	retained_intron	1094343	1094586	+	asmbl_11800	none	STRG.16769.3,blat.proc3825172.chain_1477	2	STRG.16769.1,blat.proc3825172.chain_1478	2
scaffold_14	starts_in_intron	4154105	4154105	+	asmbl_11981	none	Trinity_GG_26617_c0_g1_i2	1	STRG.16971.2	1
scaffold_10	alternate_exon	11969824	11972125	+	asmbl_3508,asmbl_3509,asmbl_3510,asmbl_3515	none	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.6,Trinity_GG_24389_c1_g1_i1	5	STRG.12838.4,Trinity_GG_24389_c0_g1_i10,blat.proc3825170.chain_1449	3
scaffold_3	retained_intron	5529821	5529991	-	asmbl_38849	none	blat.proc3825148.chain_3081	1	STRG.3225.1	1
scaffold_4	retained_intron	16480998	16481263	-	asmbl_43178	none	STRG.5225.2,blat.proc3825150.chain_1406	2	STRG.5225.1,blat.proc3825150.chain_1404	2
scaffold_4	alt_acceptor	7991152	7991153	+	asmbl_41526	none	STRG.4618.3	1	STRG.4618.2,blat.proc3825166.chain_1079	2
scaffold_5	spliced_intron	6629852	6630029	-	asmbl_44122,asmbl_44123	none	STRG.6067.2,STRG.6067.3,blat.proc3825150.chain_2255	3	STRG.6067.1,blat.proc3825150.chain_2256	2
scaffold_21	skipped_exon	402180	403833	-	asmbl_27309	none	STRG.23733.2	1	STRG.23733.1,Trinity_GG_13226_c0_g1_i1,blat.proc3825160.chain_853	3
scaffold_24	starts_in_intron	8754273	8754273	-	asmbl_33106	none	blat.proc3825162.chain_244	1	STRG.26893.1,STRG.26893.2,blat.proc3825162.chain_242,blat.proc3825162.chain_243	4
scaffold_14	ends_in_intron	3097272	3097272	+	asmbl_11899	none	blat.proc3825172.chain_1676	1	STRG.16902.1,blat.proc3825172.chain_1674,blat.proc3825172.chain_1675	3
scaffold_17	alt_acceptor	13610743	13610744	+	asmbl_19339	none	STRG.20835.2	1	STRG.20835.1	1
scaffold_19	alt_donor	7586902	7586903	-	asmbl_22247	none	STRG.22238.2	1	STRG.22238.1	1
scaffold_11	skipped_exon	8476825	8478805	+	asmbl_5783	none	STRG.13864.1,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2291	3	STRG.13864.2,Trinity_GG_24888_c0_g1_i4,blat.proc3825170.chain_2292	3
scaffold_24	starts_in_intron	8557706	8557706	+	asmbl_32425	none	blat.proc3825178.chain_60	1	STRG.26871.1,blat.proc3825178.chain_59	2
scaffold_5	alt_acceptor	17216802	17216803	-	asmbl_44796	none	blat.proc3825150.chain_3039	1	STRG.6894.1,STRG.6894.2,blat.proc3825150.chain_3040,blat.proc3825150.chain_3041,blat.proc3825150.chain_3043	5
scaffold_3	spliced_intron	13419144	13419481	-	asmbl_39264	none	STRG.3693.4	1	STRG.3693.1,STRG.3693.2,blat.proc3825148.chain_3583,blat.proc3825148.chain_3584,blat.proc3825148.chain_3585,blat.proc3825148.chain_3590	6
scaffold_3	retained_intron	14186116	14186271	-	asmbl_39332,asmbl_39333,asmbl_39334	none	STRG.3761.1,STRG.3761.4,blat.proc3825148.chain_3664	3	STRG.3761.2,STRG.3761.3,STRG.3761.5,blat.proc3825148.chain_3666	4
scaffold_4	alternate_exon	7147396	7147480	+	asmbl_41471	none	STRG.4559.5	1	STRG.4559.1,STRG.4559.2,STRG.4559.3,STRG.4559.4,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	6
scaffold_26	ends_in_intron	8446853	8446853	+	asmbl_35175	none	blat.proc3825178.chain_1535	1	STRG.28439.1,blat.proc3825178.chain_1534,blat.proc3825178.chain_1536,blat.proc3825178.chain_1537	4
scaffold_2	ends_in_intron	6899754	6899754	+	asmbl_24509	none	Trinity_GG_18453_c4_g1_i1,blat.proc3825164.chain_2165	2	blat.proc3825164.chain_2156,blat.proc3825164.chain_2158	2
scaffold_58	spliced_intron	22910	23017	+	asmbl_46609	none	STRG.30082.2	1	STRG.30082.1,Trinity_GG_33943_c0_g1_i1,Trinity_GG_33963_c0_g1_i1,blat.proc3825178.chain_3172,blat.proc3825178.chain_3208	5
scaffold_18	alternate_exon	1967688	1967732	-	asmbl_19676	none	STRG.21086.1,blat.proc3825158.chain_2042	2	STRG.21086.2,blat.proc3825158.chain_2041	2
scaffold_22	spliced_intron	504668	504905	-	asmbl_29090,asmbl_29092,asmbl_29093,asmbl_29102,asmbl_29103	none	STRG.24702.1,STRG.24702.3,STRG.24702.4,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i2,Trinity_GG_13790_c0_g1_i4,blat.proc3825160.chain_1862,blat.proc3825160.chain_1865,blat.proc3825160.chain_1867,blat.proc3825160.chain_1869	11	STRG.24702.2,Trinity_GG_13790_c0_g1_i11,blat.proc3825160.chain_1868	3
scaffold_20	ends_in_intron	7859108	7859108	-	asmbl_25934	none	blat.proc3825160.chain_414	1	STRG.23336.1,STRG.23336.2,blat.proc3825160.chain_415,blat.proc3825160.chain_416	4
scaffold_20	retained_exon	10113960	10113999	-	asmbl_26081,asmbl_26082,asmbl_26083	none	STRG.23563.1,STRG.23563.2,blat.proc3825160.chain_645,blat.proc3825160.chain_647,blat.proc3825160.chain_648	5	STRG.23563.3	1
scaffold_5	alt_acceptor	16282513	16282514	+	asmbl_46077	none	Trinity_GG_21030_c0_g1_i3,blat.proc3825166.chain_2983	2	STRG.6827.2,Trinity_GG_21030_c0_g1_i5,Trinity_GG_21030_c0_g1_i6,blat.proc3825166.chain_2982,blat.proc3825166.chain_2984	5
scaffold_13	ends_in_intron	904299	904299	-	asmbl_9377	none	Trinity_GG_8651_c0_g1_i10,blat.proc3825156.chain_273	2	STRG.15470.1,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_264,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271,blat.proc3825156.chain_272	11
scaffold_1	alternate_exon	22371837	22372575	+	asmbl_2692	none	STRG.1491.6	1	STRG.1491.1	1
scaffold_17	retained_intron	14349448	14349635	-	asmbl_18426	none	blat.proc3825158.chain_1890	1	STRG.20914.2,blat.proc3825158.chain_1892,blat.proc3825158.chain_1893	3
scaffold_8	ends_in_intron	8747538	8747538	+	asmbl_53034	none	Trinity_GG_22946_c0_g1_i3,blat.proc3825168.chain_2693	2	STRG.10133.1,STRG.10133.2,blat.proc3825168.chain_2691	3
scaffold_11	spliced_intron	15653766	15653915	-	asmbl_7197,asmbl_7198,asmbl_7199,asmbl_7200,asmbl_7202,asmbl_7203	none	STRG.14308.1,STRG.14308.2,blat.proc3825154.chain_2859,blat.proc3825154.chain_2861,blat.proc3825154.chain_2863,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867,blat.proc3825154.chain_2868	8	blat.proc3825154.chain_2860,blat.proc3825154.chain_2865	2
scaffold_2	ends_in_intron	1617003	1617003	-	asmbl_22862	none	Trinity_GG_867_c2_g1_i1,blat.proc3825148.chain_1568	2	STRG.1646.2,blat.proc3825148.chain_1565,blat.proc3825148.chain_1566	3
scaffold_13	alt_acceptor	520372	520373	+	asmbl_10484	none	STRG.15449.5,Trinity_GG_25810_c0_g1_i5,blat.proc3825172.chain_180	3	STRG.15449.1,STRG.15449.2,STRG.15449.3,STRG.15449.4,Trinity_GG_25810_c0_g1_i15,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_179,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_184,blat.proc3825172.chain_185,blat.proc3825172.chain_186,blat.proc3825172.chain_188	13
scaffold_8	skipped_exon	11829975	11830992	+	asmbl_53273	none	STRG.10387.1	1	STRG.10387.2,blat.proc3825168.chain_2982	2
scaffold_7	starts_in_intron	13470708	13470708	+	asmbl_50345	none	Trinity_GG_22567_c0_g1_i1,blat.proc3825168.chain_1978	2	STRG.9449.1,Trinity_GG_22567_c0_g1_i2,blat.proc3825168.chain_1979	3
scaffold_5	spliced_intron	10196467	10198044	-	asmbl_44324	none	blat.proc3825150.chain_2531	1	blat.proc3825150.chain_2530	1
scaffold_5	alt_donor	6324224	6324225	+	asmbl_45423	none	STRG.6044.3	1	STRG.6044.1	1
scaffold_26	retained_intron	3791282	3791394	+	asmbl_34837	none	blat.proc3825178.chain_1153	1	blat.proc3825178.chain_1150	1
scaffold_14	retained_exon	14148983	14149024	+	asmbl_12528	none	STRG.17687.3	1	STRG.17687.2,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	3
scaffold_10	alt_acceptor	4156848	4156849	-	asmbl_4268,asmbl_4269,asmbl_4270	none	STRG.12253.1,STRG.12253.2,blat.proc3825154.chain_809,blat.proc3825154.chain_810,blat.proc3825154.chain_811	5	STRG.12253.3	1
scaffold_6	alternate_exon	2852824	2854552	-	asmbl_48173	none	STRG.7283.2	1	STRG.7283.1,blat.proc3825150.chain_3329	2
scaffold_3	spliced_intron	2264175	2264205	+	asmbl_39904	none	STRG.3025.1	1	Trinity_GG_18996_c0_g1_i1,blat.proc3825164.chain_3213	2
scaffold_23	ends_in_intron	4315523	4315523	+	asmbl_31495,asmbl_31497	none	blat.proc3825176.chain_2781	1	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2777,blat.proc3825176.chain_2778,blat.proc3825176.chain_2780	6
scaffold_87	alt_acceptor	15330	15331	+	asmbl_53728	none	STRG.30146.5	1	STRG.30146.3,STRG.30146.4	2
scaffold_10	alt_acceptor	7667451	7667452	+	asmbl_3288,asmbl_3291	none	STRG.12555.2,blat.proc3825170.chain_1181	2	STRG.12555.1,STRG.12555.3,blat.proc3825170.chain_1182,blat.proc3825170.chain_1183	4
scaffold_10	skipped_exon	12856613	12857353	-	asmbl_4834	none	STRG.12871.1	1	STRG.12871.2	1
scaffold_2	alternate_exon	14131180	14131231	-	asmbl_23561	none	STRG.2408.2	1	STRG.2408.1,blat.proc3825148.chain_2401,blat.proc3825148.chain_2402,blat.proc3825148.chain_2403	4
scaffold_19	spliced_intron	13029049	13029345	-	asmbl_22585,asmbl_22586	none	STRG.22625.1,STRG.22625.3,Trinity_GG_12611_c1_g1_i1,blat.proc3825158.chain_3482	4	Trinity_GG_12611_c1_g1_i2,blat.proc3825158.chain_3483	2
scaffold_6	alt_donor	6869240	6869241	+	asmbl_47015	none	blat.proc3825166.chain_3681	1	STRG.7592.2,blat.proc3825166.chain_3679	2
scaffold_25	starts_in_intron	3749626	3749626	+	asmbl_33463	none	STRG.27328.2	1	STRG.27328.1,blat.proc3825178.chain_421	2
scaffold_2	alt_acceptor	15489616	15489617	+	asmbl_25052,asmbl_25053,asmbl_25056,asmbl_25057	none	STRG.2506.1,STRG.2506.2,STRG.2506.4,blat.proc3825164.chain_2791,blat.proc3825164.chain_2792,blat.proc3825164.chain_2794	6	STRG.2506.3,blat.proc3825164.chain_2793	2
scaffold_5	alternate_exon	15893539	15893593	+	asmbl_46031	none	STRG.6778.4	1	STRG.6778.1	1
scaffold_28	retained_exon	7234724	7234744	+	asmbl_37644	none	blat.proc3825178.chain_2932	1	STRG.29785.1,blat.proc3825178.chain_2930	2
scaffold_20	alternate_exon	8345671	8345701	-	asmbl_25979,asmbl_25983	none	STRG.23378.3,blat.proc3825160.chain_507,blat.proc3825160.chain_508	3	STRG.23378.1,Trinity_GG_13065_c0_g1_i10,blat.proc3825160.chain_509,blat.proc3825160.chain_511,blat.proc3825160.chain_512	5
scaffold_10	retained_intron	715906	716550	-	asmbl_3986,asmbl_3987,asmbl_3990,asmbl_3992	none	STRG.11957.2,STRG.11957.3,STRG.11957.5,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541	5	STRG.11957.1,STRG.11957.4,blat.proc3825154.chain_545	3
scaffold_6	alt_donor	19076979	19076980	+	asmbl_47869,asmbl_47872	none	STRG.8575.2,Trinity_GG_21983_c0_g1_i4,Trinity_GG_21983_c0_g1_i5,blat.proc3825168.chain_949,blat.proc3825168.chain_950	5	STRG.8575.1,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i6,Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_948,blat.proc3825168.chain_951,blat.proc3825168.chain_952	7
scaffold_1	alt_acceptor	10409423	10409424	-	asmbl_578,asmbl_580	none	STRG.676.1,blat.proc3825148.chain_693,blat.proc3825148.chain_695	3	STRG.676.2,blat.proc3825148.chain_694	2
scaffold_19	alt_acceptor	13372901	13372902	+	asmbl_21877	none	STRG.22657.2	1	STRG.22657.1,STRG.22657.3,Trinity_GG_29796_c0_g1_i2,blat.proc3825174.chain_3600	4
scaffold_7	starts_in_intron	4072238	4072238	-	asmbl_50853	none	blat.proc3825152.chain_1190	1	STRG.8807.1,blat.proc3825152.chain_1191	2
scaffold_17	starts_in_intron	8875326	8875326	-	asmbl_18132	none	blat.proc3825158.chain_1545	1	STRG.20505.1	1
scaffold_13	retained_exon	1380178	1380337	-	asmbl_9408	none	STRG.15508.1	1	blat.proc3825156.chain_341,blat.proc3825156.chain_343	2
scaffold_13	starts_in_intron	9214930	9214930	+	asmbl_11175	none	blat.proc3825172.chain_860	1	STRG.16180.1,blat.proc3825172.chain_861	2
scaffold_3	alternate_exon	19825087	19825175	-	asmbl_39659	none	STRG.4096.1,Trinity_GG_2255_c0_g1_i1,Trinity_GG_2255_c0_g1_i3,blat.proc3825150.chain_269,blat.proc3825150.chain_270	5	STRG.4096.2,STRG.4096.3,Trinity_GG_2255_c0_g1_i2,blat.proc3825150.chain_268	4
scaffold_27	retained_intron	3130050	3130150	+	asmbl_36189	none	Trinity_GG_33197_c0_g1_i2,blat.proc3825178.chain_1838	2	STRG.28805.3,Trinity_GG_33197_c0_g1_i3,blat.proc3825178.chain_1837,blat.proc3825178.chain_1839	4
scaffold_28	alternate_exon	2198739	2199054	+	asmbl_37346	none	STRG.29390.3	1	STRG.29390.2,Trinity_GG_33584_c0_g1_i2,blat.proc3825178.chain_2543	3
scaffold_18	skipped_exon	9788963	9790028	+	asmbl_20892,asmbl_20894	none	STRG.21586.2,blat.proc3825174.chain_2556	2	STRG.21586.1	1
scaffold_6	alt_donor	837950	837951	+	asmbl_46677	none	STRG.7145.1,Trinity_GG_21242_c0_g1_i1,blat.proc3825166.chain_3342	3	STRG.7145.2	1
scaffold_2	retained_intron	2542873	2542935	-	asmbl_22900,asmbl_22903	none	STRG.1700.1,blat.proc3825148.chain_1645,blat.proc3825148.chain_1646	3	STRG.1700.2,STRG.1700.3	2
scaffold_28	starts_in_intron	1401369	1401369	+	asmbl_37304	none	blat.proc3825178.chain_2473	1	STRG.29335.1	1
scaffold_23	starts_in_intron	4166183	4166183	+	asmbl_31488,asmbl_31489	none	blat.proc3825176.chain_2766,blat.proc3825176.chain_2767	2	STRG.25833.1	1
scaffold_12	retained_intron	11690593	11690936	-	asmbl_8823	none	Trinity_GG_8432_c0_g1_i1,blat.proc3825154.chain_3614	2	STRG.15092.2,blat.proc3825154.chain_3615	2
scaffold_11	alternate_exon	2299369	2299400	-	asmbl_6492	none	STRG.13394.1,blat.proc3825154.chain_1961	2	STRG.13394.2,blat.proc3825154.chain_1960	2
scaffold_6	retained_intron	8560637	8560723	-	asmbl_48568	none	blat.proc3825152.chain_25	1	STRG.7737.1,STRG.7737.2	2
scaffold_13	starts_in_intron	4608561	4608561	-	asmbl_9641	none	blat.proc3825156.chain_663	1	STRG.15796.1,STRG.15796.4,blat.proc3825156.chain_670,blat.proc3825156.chain_671	4
scaffold_12	retained_exon	1340044	1340157	+	asmbl_7469,asmbl_7470	none	blat.proc3825170.chain_2962,blat.proc3825170.chain_2963	2	STRG.14467.2,blat.proc3825170.chain_2961	2
scaffold_10	retained_intron	1424584	1425202	+	asmbl_2934,asmbl_2935,asmbl_2936,asmbl_2937,asmbl_2938,asmbl_2939	none	STRG.12016.1,STRG.12016.2,STRG.12016.3,STRG.12016.5,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_759,blat.proc3825170.chain_760,blat.proc3825170.chain_761,blat.proc3825170.chain_762	9	STRG.12016.4,Trinity_GG_23995_c0_g1_i3,Trinity_GG_23995_c0_g1_i4,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_763,blat.proc3825170.chain_764,blat.proc3825170.chain_765	7
scaffold_14	starts_in_intron	1339746	1339746	+	asmbl_11822	none	Trinity_GG_26551_c0_g1_i2,blat.proc3825172.chain_1565	2	STRG.16780.1,Trinity_GG_26551_c0_g1_i1,blat.proc3825172.chain_1564	3
scaffold_5	retained_intron	7711197	7711308	-	asmbl_44187,asmbl_44188	none	STRG.6151.1,STRG.6151.2,blat.proc3825150.chain_2358,blat.proc3825150.chain_2359	4	blat.proc3825150.chain_2357	1
scaffold_27	starts_in_intron	4463711	4463711	-	asmbl_36957	none	blat.proc3825162.chain_2137	1	STRG.28901.1,blat.proc3825162.chain_2136	2
scaffold_3	starts_in_intron	7592346	7592346	+	asmbl_40166,asmbl_40168	none	Trinity_GG_19221_c0_g1_i1,Trinity_GG_19221_c0_g1_i3,blat.proc3825164.chain_3626,blat.proc3825164.chain_3627	4	STRG.3351.1,blat.proc3825164.chain_3629,blat.proc3825164.chain_3630	3
scaffold_14	starts_in_intron	5451939	5451939	+	asmbl_12013	none	Trinity_GG_26638_c0_g1_i1,blat.proc3825172.chain_1724	2	STRG.17020.1,Trinity_GG_26638_c0_g2_i2,blat.proc3825172.chain_1725,blat.proc3825172.chain_1726	4
scaffold_2	starts_in_intron	3629625	3629625	+	asmbl_24292,asmbl_24293	none	STRG.1787.2,STRG.1787.3	2	STRG.1787.1,Trinity_GG_18311_c0_g1_i6	2
scaffold_2	spliced_intron	1301947	1302291	+	asmbl_24176	none	STRG.1609.1,Trinity_GG_18242_c0_g1_i6,blat.proc3825164.chain_1788	3	STRG.1609.2,Trinity_GG_18242_c0_g1_i1,blat.proc3825164.chain_1789	3
scaffold_23	skipped_exon	2207980	2209572	-	asmbl_30714	none	STRG.25698.1	1	STRG.25698.2,STRG.25698.3,STRG.25698.5,STRG.25698.6	4
scaffold_24	retained_intron	2065131	2065376	-	asmbl_32771	none	STRG.26435.2,Trinity_GG_14777_c0_g1_i3,blat.proc3825160.chain_3557	3	STRG.26435.1	1
scaffold_11	alt_donor	16529945	16529946	+	asmbl_6160	none	STRG.14343.2	1	STRG.14343.1,blat.proc3825170.chain_2857	2
scaffold_13	starts_in_intron	384910	384910	-	asmbl_9331	none	blat.proc3825156.chain_285	1	STRG.15438.1,STRG.15438.2,blat.proc3825156.chain_284,blat.proc3825156.chain_286,blat.proc3825156.chain_287	5
scaffold_15	skipped_exon	14633432	14634502	-	asmbl_14734	none	STRG.18877.3,blat.proc3825156.chain_3748	2	STRG.18877.1,STRG.18877.2,blat.proc3825156.chain_3749,blat.proc3825156.chain_3750	4
scaffold_25	spliced_intron	5827770	5828229	-	asmbl_34287,asmbl_34288,asmbl_34289,asmbl_34290,asmbl_34292,asmbl_34296	none	STRG.27479.1,STRG.27479.2,STRG.27479.3,STRG.27479.4,blat.proc3825162.chain_877,blat.proc3825162.chain_878	6	blat.proc3825162.chain_874	1
scaffold_10	ends_in_intron	1445645	1445645	-	asmbl_4058	none	blat.proc3825154.chain_569	1	STRG.12017.1,Trinity_GG_6685_c0_g1_i4,blat.proc3825154.chain_568	3
scaffold_12	retained_intron	5636130	5637493	-	asmbl_8517	none	STRG.14715.1,blat.proc3825154.chain_3252	2	STRG.14715.2,blat.proc3825154.chain_3251	2
scaffold_5	alt_donor	18698533	18698534	-	asmbl_44853	none	STRG.6997.3	1	STRG.6997.1,STRG.6997.2	2
scaffold_13	alt_donor	5804903	5804904	+	asmbl_10903	none	blat.proc3825172.chain_711	1	blat.proc3825172.chain_706	1
scaffold_27	alt_donor	2629499	2629500	-	asmbl_36834	none	STRG.28738.3,blat.proc3825162.chain_1991	2	STRG.28738.2,blat.proc3825162.chain_1992	2
scaffold_3	alternate_exon	6031481	6031739	-	asmbl_38884	none	STRG.3259.2,blat.proc3825148.chain_3152	2	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.5,STRG.3259.6,STRG.3259.7	6
scaffold_1	starts_in_intron	11179512	11179512	+	asmbl_2077	none	blat.proc3825164.chain_910	1	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_906,blat.proc3825164.chain_908,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915,blat.proc3825164.chain_916	12
scaffold_6	skipped_exon	12116976	12117548	+	asmbl_47376	none	Trinity_GG_21681_c0_g1_i3,blat.proc3825168.chain_428	2	STRG.7985.3,Trinity_GG_21681_c0_g1_i2,blat.proc3825168.chain_429	3
scaffold_1	skipped_exon	12463351	12464319	-	asmbl_718	none	STRG.867.2	1	STRG.867.1	1
scaffold_17	spliced_intron	8951018	8951264	+	asmbl_19048	none	STRG.20514.1,blat.proc3825174.chain_1376	2	blat.proc3825174.chain_1375	1
scaffold_3	retained_intron	17456078	17456973	+	asmbl_40680,asmbl_40682	none	STRG.3978.3,Trinity_GG_19520_c0_g1_i1,blat.proc3825166.chain_435	3	STRG.3978.1,STRG.3978.2,STRG.3978.4,STRG.3978.5,Trinity_GG_19520_c0_g1_i2,blat.proc3825166.chain_436	6
scaffold_24	retained_intron	10346483	10346648	-	asmbl_33181	none	STRG.26996.2	1	STRG.26996.1	1
scaffold_21	alt_acceptor	11272094	11272095	-	asmbl_28112,asmbl_28113,asmbl_28115,asmbl_28116	none	STRG.24607.1,blat.proc3825160.chain_1823,blat.proc3825160.chain_1824,blat.proc3825160.chain_1825,blat.proc3825160.chain_1827,blat.proc3825160.chain_1829	6	STRG.24607.2	1
scaffold_6	retained_exon	5058279	5058314	-	asmbl_48388,asmbl_48389,asmbl_48395	none	STRG.7486.1,STRG.7486.2,STRG.7486.3,blat.proc3825150.chain_3643,blat.proc3825150.chain_3645	5	STRG.7486.5	1
scaffold_25	retained_intron	4811129	4811361	+	asmbl_33532	none	Trinity_GG_32429_c0_g1_i1,blat.proc3825178.chain_524	2	STRG.27415.1,STRG.27415.2,Trinity_GG_32429_c0_g1_i2,Trinity_GG_32429_c0_g1_i4,Trinity_GG_32429_c0_g1_i5,blat.proc3825178.chain_523,blat.proc3825178.chain_525,blat.proc3825178.chain_526,blat.proc3825178.chain_527	9
scaffold_18	alternate_exon	9788924	9788962	+	asmbl_20894	none	STRG.21586.2	1	STRG.21586.3,blat.proc3825174.chain_2555	2
scaffold_5	alt_acceptor	19146956	19146957	-	asmbl_44897	none	STRG.7027.2	1	STRG.7027.1,blat.proc3825150.chain_3122	2
scaffold_12	retained_intron	15014286	15014615	-	asmbl_9033,asmbl_9036	none	STRG.15302.2,blat.proc3825156.chain_107,blat.proc3825156.chain_110	3	STRG.15302.1,blat.proc3825156.chain_106,blat.proc3825156.chain_109	3
scaffold_13	starts_in_intron	6995713	6995713	+	asmbl_11007	none	Trinity_GG_26094_c0_g1_i1,blat.proc3825172.chain_738	2	STRG.15986.1,blat.proc3825172.chain_737	2
scaffold_20	ends_in_intron	5849237	5849237	-	asmbl_25781	none	blat.proc3825160.chain_204	1	STRG.23186.1,blat.proc3825160.chain_202	2
scaffold_6	alt_acceptor	393449	393450	+	asmbl_46658	none	STRG.7104.2	1	STRG.7104.1,blat.proc3825166.chain_3314	2
scaffold_9	starts_in_intron	9706341	9706341	+	asmbl_54230	none	Trinity_GG_23640_c1_g2_i1,blat.proc3825170.chain_148	2	STRG.11349.2,STRG.11349.3,STRG.11349.6,Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_139,blat.proc3825170.chain_143,blat.proc3825170.chain_146	7
scaffold_7	alt_acceptor	7440465	7440466	+	asmbl_49921	none	STRG.8996.1,blat.proc3825168.chain_1462	2	STRG.8996.2	1
scaffold_3	spliced_intron	7917853	7917880	-	asmbl_39000	none	STRG.3377.4	1	blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	2
scaffold_17	spliced_intron	9088832	9088922	-	asmbl_18150,asmbl_18152	none	STRG.20538.3,blat.proc3825158.chain_1560	2	STRG.20538.1,STRG.20538.2,blat.proc3825158.chain_1561	3
scaffold_15	spliced_intron	4500541	4500727	+	asmbl_15149,asmbl_15152,asmbl_15153	none	STRG.18181.1,blat.proc3825172.chain_2829,blat.proc3825172.chain_2830,blat.proc3825172.chain_2831	4	Trinity_GG_27277_c0_g2_i1,blat.proc3825172.chain_2832	2
scaffold_1	starts_in_intron	9975242	9975242	+	asmbl_1998	none	blat.proc3825164.chain_732	1	STRG.666.1,blat.proc3825164.chain_733	2
scaffold_3	starts_in_intron	10940387	10940387	+	asmbl_40324	none	Trinity_GG_19313_c0_g1_i3,blat.proc3825166.chain_61	2	STRG.3546.1,STRG.3546.2,blat.proc3825166.chain_60,blat.proc3825166.chain_62	4
scaffold_8	retained_exon	9128802	9129248	-	asmbl_52009,asmbl_52011,asmbl_52012	none	STRG.10172.2,blat.proc3825152.chain_2387,blat.proc3825152.chain_2389	3	STRG.10172.3,STRG.10172.4	2
scaffold_15	retained_intron	8620031	8620119	+	asmbl_15342	none	Trinity_GG_27395_c0_g1_i4,blat.proc3825172.chain_3046	2	STRG.18409.1,STRG.18409.2,blat.proc3825172.chain_3042,blat.proc3825172.chain_3043,blat.proc3825172.chain_3044,blat.proc3825172.chain_3045	6
scaffold_27	ends_in_intron	9110151	9110151	+	asmbl_36502	none	Trinity_GG_33464_c1_g1_i1	1	STRG.29163.1,blat.proc3825178.chain_2361,blat.proc3825178.chain_2362,blat.proc3825178.chain_2363,blat.proc3825178.chain_2364,blat.proc3825178.chain_2365	6
scaffold_3	skipped_exon	8999514	9000798	-	asmbl_39051,asmbl_39052	none	STRG.3431.1,STRG.3431.2	2	blat.proc3825148.chain_3317,blat.proc3825148.chain_3319,blat.proc3825148.chain_3320	3
scaffold_15	spliced_intron	15355271	15355426	+	asmbl_15760	none	blat.proc3825172.chain_3563	1	STRG.18922.1,STRG.18922.3,Trinity_GG_27686_c0_g1_i7,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3561,blat.proc3825172.chain_3564,blat.proc3825172.chain_3566	8
scaffold_2	alternate_exon	3373448	3373624	+	asmbl_24280	none	STRG.1773.3	1	STRG.1773.1,blat.proc3825164.chain_1894	2
scaffold_15	alternate_exon	14750802	14750907	-	asmbl_14744	none	STRG.18894.2,blat.proc3825158.chain_11	2	STRG.18894.1,blat.proc3825158.chain_10	2
scaffold_10	alternate_exon	12799156	12799216	-	asmbl_4826	none	STRG.12868.2,blat.proc3825154.chain_1466	2	STRG.12868.3	1
scaffold_23	retained_intron	2032895	2033003	-	asmbl_30689	none	Trinity_GG_14358_c0_g1_i4,blat.proc3825160.chain_2841	2	STRG.25678.1	1
scaffold_19	alt_acceptor	12086648	12086649	-	asmbl_22450	none	blat.proc3825158.chain_3290	1	STRG.22533.1,blat.proc3825158.chain_3291	2
scaffold_4	retained_intron	17907555	17907735	-	asmbl_43326,asmbl_43327	none	STRG.5387.3,blat.proc3825150.chain_1544	2	blat.proc3825150.chain_1543	1
scaffold_24	alt_donor	10089307	10089308	+	asmbl_32539	none	STRG.26971.2	1	blat.proc3825162.chain_331	1
scaffold_8	alternate_exon	6850332	6850409	-	asmbl_51894	none	STRG.10046.2	1	STRG.10046.1,Trinity_GG_5599_c0_g1_i1,blat.proc3825152.chain_2303	3
scaffold_27	ends_in_intron	3023839	3023839	+	asmbl_36170,asmbl_36172	none	blat.proc3825178.chain_1871,blat.proc3825178.chain_1873	2	STRG.28790.1,STRG.28790.2,blat.proc3825178.chain_1868,blat.proc3825178.chain_1872	4
scaffold_2	retained_intron	9322220	9323761	-	asmbl_23384	none	STRG.2178.3,Trinity_GG_1187_c1_g1_i2,blat.proc3825148.chain_2161	3	STRG.2178.4	1
scaffold_14	ends_in_intron	1101089	1101089	+	asmbl_11804	none	Trinity_GG_26510_c0_g1_i6,blat.proc3825172.chain_1479	2	STRG.16769.1,STRG.16769.2,STRG.16769.3,Trinity_GG_26510_c0_g1_i2,blat.proc3825172.chain_1475,blat.proc3825172.chain_1477,blat.proc3825172.chain_1478,blat.proc3825172.chain_1480	8
scaffold_9	starts_in_intron	3410495	3410495	-	asmbl_54903	none	Trinity_GG_6075_c0_g1_i1	1	STRG.10955.1,STRG.10955.3,blat.proc3825152.chain_3203,blat.proc3825152.chain_3205,blat.proc3825152.chain_3206	5
scaffold_6	alt_donor	3254050	3254051	+	asmbl_46822	none	STRG.7328.1,Trinity_GG_21294_c0_g1_i1	2	STRG.7328.2,Trinity_GG_21294_c0_g1_i2	2
scaffold_26	starts_in_intron	2253166	2253166	+	asmbl_34736	none	Trinity_GG_32739_c2_g1_i2,blat.proc3825178.chain_1020	2	STRG.27955.1,STRG.27955.2,blat.proc3825178.chain_1017,blat.proc3825178.chain_1018	4
scaffold_6	alt_acceptor	1751752	1751753	-	asmbl_48113,asmbl_48115,asmbl_48117,asmbl_48118,asmbl_48119,asmbl_48121,asmbl_48122	none	STRG.7232.1,STRG.7232.3,STRG.7232.5,STRG.7232.6,STRG.7232.7,blat.proc3825150.chain_3308,blat.proc3825150.chain_3309,blat.proc3825150.chain_3311,blat.proc3825150.chain_3312,blat.proc3825150.chain_3314,blat.proc3825150.chain_3315	11	STRG.7232.4	1
scaffold_6	starts_in_intron	16293655	16293655	-	asmbl_49114	none	blat.proc3825152.chain_790	1	STRG.8352.1,STRG.8352.2,blat.proc3825152.chain_791	3
scaffold_8	starts_in_intron	16267935	16267935	+	asmbl_53443	none	blat.proc3825168.chain_3171	1	STRG.10616.1,blat.proc3825168.chain_3173	2
scaffold_4	starts_in_intron	294931	294931	-	asmbl_42320	none	blat.proc3825150.chain_352	1	Trinity_GG_2299_c0_g1_i1,Trinity_GG_2299_c0_g1_i2,blat.proc3825150.chain_353,blat.proc3825150.chain_354	4
scaffold_26	alternate_exon	6706964	6713093	-	asmbl_35696	none	STRG.28371.1,blat.proc3825162.chain_1604	2	STRG.28371.3,blat.proc3825162.chain_1602,blat.proc3825162.chain_1603	3
scaffold_3	retained_exon	14495454	14495656	-	asmbl_39379	none	Trinity_GG_2093_c0_g2_i1,blat.proc3825148.chain_3721	2	Trinity_GG_2093_c0_g1_i1,Trinity_GG_2093_c0_g1_i2,blat.proc3825148.chain_3719,blat.proc3825148.chain_3720	4
scaffold_1	skipped_exon	18763492	18766130	+	asmbl_2570	none	STRG.1311.3	1	STRG.1311.2	1
scaffold_23	alt_donor	5870425	5870426	-	asmbl_30955	none	STRG.25974.1,blat.proc3825160.chain_3159	2	STRG.25974.2,blat.proc3825160.chain_3158	2
scaffold_15	starts_in_intron	15447211	15447211	+	asmbl_15790	none	Trinity_GG_27706_c0_g1_i5,blat.proc3825172.chain_3620	2	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3619,blat.proc3825172.chain_3624,blat.proc3825172.chain_3626	7
scaffold_10	starts_in_intron	982985	982985	-	asmbl_4028	none	Trinity_GG_6650_c0_g1_i2,blat.proc3825154.chain_496	2	STRG.11983.1,STRG.11983.2,STRG.11983.3,blat.proc3825154.chain_497	4
scaffold_25	retained_intron	9336651	9337098	+	asmbl_33811	none	blat.proc3825178.chain_881	1	STRG.27762.1,blat.proc3825178.chain_877,blat.proc3825178.chain_878,blat.proc3825178.chain_879,blat.proc3825178.chain_880,blat.proc3825178.chain_882	6
scaffold_19	ends_in_intron	12246932	12246932	-	asmbl_22474	none	blat.proc3825158.chain_3308	1	STRG.22552.1,STRG.22552.2,blat.proc3825158.chain_3307,blat.proc3825158.chain_3309,blat.proc3825158.chain_3310,blat.proc3825158.chain_3311,blat.proc3825158.chain_3312,blat.proc3825158.chain_3313	8
scaffold_13	starts_in_intron	13709375	13709375	-	asmbl_10156	none	blat.proc3825156.chain_1296	1	blat.proc3825156.chain_1297	1
scaffold_12	spliced_intron	4784262	4784513	-	asmbl_8448,asmbl_8450,asmbl_8452,asmbl_8453,asmbl_8455,asmbl_8456,asmbl_8457	none	STRG.14660.1,STRG.14660.2,STRG.14660.4,blat.proc3825154.chain_3145,blat.proc3825154.chain_3147,blat.proc3825154.chain_3148,blat.proc3825154.chain_3150,blat.proc3825154.chain_3151,blat.proc3825154.chain_3152,blat.proc3825154.chain_3153	10	STRG.14660.3,Trinity_GG_8171_c0_g1_i15,blat.proc3825154.chain_3146	3
scaffold_5	ends_in_intron	5057876	5057876	+	asmbl_45337	none	blat.proc3825166.chain_2198	1	STRG.5959.1,STRG.5959.2,STRG.5959.3,STRG.5959.4,blat.proc3825166.chain_2195,blat.proc3825166.chain_2197	6
scaffold_28	skipped_exon	2641399	2643017	+	asmbl_37391,asmbl_37392	none	STRG.29439.1,STRG.29439.2,Trinity_GG_33632_c0_g1_i1,blat.proc3825178.chain_2614,blat.proc3825178.chain_2616	5	STRG.29439.3,Trinity_GG_33632_c0_g1_i3,blat.proc3825178.chain_2615	3
scaffold_2	alt_donor	9140288	9140289	-	asmbl_23354,asmbl_23355	none	STRG.2159.1,STRG.2159.2	2	blat.proc3825148.chain_2180,blat.proc3825148.chain_2181	2
scaffold_13	alternate_exon	9326794	9328370	-	asmbl_10021	none	blat.proc3825156.chain_1013	1	STRG.16199.4	1
scaffold_23	spliced_intron	2151002	2151100	-	asmbl_30696,asmbl_30698	none	STRG.25684.1,STRG.25684.2,blat.proc3825160.chain_2852	3	STRG.25684.3,blat.proc3825160.chain_2853	2
scaffold_5	retained_intron	15528913	15529261	-	asmbl_44692	none	STRG.6741.1,Trinity_GG_3757_c0_g1_i2,blat.proc3825150.chain_2883	3	blat.proc3825150.chain_2884	1
scaffold_6	alt_acceptor	13577498	13577499	-	asmbl_48915	none	STRG.8098.4,Trinity_GG_4614_c1_g1_i1	2	STRG.8098.3	1
scaffold_20	retained_intron	11678784	11679288	-	asmbl_26178,asmbl_26181	none	STRG.23672.2,blat.proc3825160.chain_758,blat.proc3825160.chain_759	3	STRG.23672.3,blat.proc3825160.chain_757	2
scaffold_12	skipped_exon	9235345	9236367	-	asmbl_8664,asmbl_8667,asmbl_8670	none	STRG.14939.1,blat.proc3825154.chain_3450,blat.proc3825154.chain_3454	3	STRG.14939.3,blat.proc3825154.chain_3451	2
scaffold_7	retained_intron	2734406	2734533	+	asmbl_49664	none	blat.proc3825168.chain_1141	1	STRG.8703.1,blat.proc3825168.chain_1139	2
scaffold_13	alt_acceptor	14175939	14175940	+	asmbl_11435	none	Trinity_GG_26388_c0_g1_i2,blat.proc3825172.chain_1270	2	STRG.16460.2,STRG.16460.5,Trinity_GG_26388_c0_g1_i7,Trinity_GG_26388_c0_g1_i9,blat.proc3825172.chain_1264,blat.proc3825172.chain_1269	6
scaffold_4	retained_exon	16434731	16434894	-	asmbl_43170	none	STRG.5219.1	1	STRG.5219.2,STRG.5219.3	2
scaffold_3	alternate_exon	4522199	4523366	+	asmbl_40012	none	STRG.3149.1,blat.proc3825164.chain_3417	2	STRG.3149.2,blat.proc3825164.chain_3418	2
scaffold_10	skipped_exon	1112389	1112874	+	asmbl_2903	none	STRG.11999.2,Trinity_GG_23979_c0_g1_i1,blat.proc3825170.chain_738	3	STRG.11999.1,Trinity_GG_23979_c0_g1_i2,blat.proc3825170.chain_739	3
scaffold_15	alternate_exon	10880209	10880486	-	asmbl_14459	none	STRG.18571.2,Trinity_GG_10429_c1_g1_i1,blat.proc3825156.chain_3424	3	STRG.18571.1,STRG.18571.3,blat.proc3825156.chain_3423	3
scaffold_15	alt_donor	9286805	9286806	+	asmbl_15384	none	STRG.18460.2	1	STRG.18460.1,blat.proc3825172.chain_3076,blat.proc3825172.chain_3077	3
scaffold_11	retained_intron	4744010	4744101	-	asmbl_6626	none	blat.proc3825154.chain_2167	1	STRG.13567.1,STRG.13567.2,blat.proc3825154.chain_2163,blat.proc3825154.chain_2164,blat.proc3825154.chain_2166	5
scaffold_19	ends_in_intron	5636881	5636881	-	asmbl_22179,asmbl_22180	none	blat.proc3825158.chain_2947,blat.proc3825158.chain_2948	2	blat.proc3825158.chain_2946	1
scaffold_10	starts_in_intron	6011259	6011259	+	asmbl_3217	none	blat.proc3825170.chain_1116	1	STRG.12433.1,blat.proc3825170.chain_1115	2
scaffold_7	starts_in_intron	5235112	5235112	+	asmbl_49802,asmbl_49803	none	blat.proc3825168.chain_1363,blat.proc3825168.chain_1365	2	STRG.8866.1,blat.proc3825168.chain_1364,blat.proc3825168.chain_1366	3
scaffold_20	spliced_intron	5553307	5553473	-	asmbl_25770,asmbl_25771,asmbl_25772,asmbl_25773	none	STRG.23182.1,STRG.23182.3,STRG.23182.4,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_216	6	STRG.23182.2,Trinity_GG_12903_c0_g1_i10,blat.proc3825160.chain_211,blat.proc3825160.chain_214,blat.proc3825160.chain_215,blat.proc3825160.chain_217	6
scaffold_2	spliced_intron	6350944	6351030	-	asmbl_23193	none	STRG.2001.1,Trinity_GG_1061_c0_g1_i1,blat.proc3825148.chain_1893	3	Trinity_GG_1061_c0_g1_i2,blat.proc3825148.chain_1894	2
scaffold_13	retained_intron	9535986	9536300	-	asmbl_10031,asmbl_10032	none	STRG.16216.1,STRG.16216.2,blat.proc3825156.chain_1123	3	STRG.16216.3,STRG.16216.5,blat.proc3825156.chain_1124	3
scaffold_12	retained_intron	12285468	12285624	-	asmbl_8853	none	STRG.15127.2	1	STRG.15127.1,blat.proc3825154.chain_3636,blat.proc3825154.chain_3637	3
scaffold_6	alt_acceptor	3287507	3287508	-	asmbl_48235	none	STRG.7334.2	1	STRG.7334.1,STRG.7334.3	2
scaffold_24	alt_donor	879746	879747	+	asmbl_32055	none	STRG.26371.2	1	STRG.26371.3	1
scaffold_9	starts_in_intron	17466679	17466679	-	asmbl_55648	none	blat.proc3825154.chain_347	1	STRG.11840.1,STRG.11840.2,STRG.11840.3,blat.proc3825154.chain_346,blat.proc3825154.chain_348	5
scaffold_22	alt_donor	6502593	6502594	-	asmbl_29333	none	STRG.24986.1,blat.proc3825160.chain_2165	2	STRG.24986.2	1
scaffold_18	ends_in_intron	9648529	9648529	-	asmbl_20072	none	Trinity_GG_12053_c0_g1_i1,blat.proc3825158.chain_2466	2	STRG.21571.1	1
scaffold_18	spliced_intron	5725934	5726148	+	asmbl_20595	none	STRG.21317.1,Trinity_GG_29052_c0_g1_i1,blat.proc3825174.chain_2270	3	Trinity_GG_29052_c0_g1_i2,blat.proc3825174.chain_2269	2
scaffold_20	alternate_exon	5546664	5549102	-	asmbl_25767,asmbl_25768,asmbl_25770,asmbl_25771	none	STRG.23182.1,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216,blat.proc3825160.chain_217	7	STRG.23182.4,blat.proc3825160.chain_219	2
scaffold_5	alternate_exon	4690763	4693877	-	asmbl_43992,asmbl_43994,asmbl_43995	none	blat.proc3825150.chain_2075,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084	3	blat.proc3825150.chain_2079	1
scaffold_15	starts_in_intron	4962169	4962169	+	asmbl_15176,asmbl_15182	none	STRG.18207.4,Trinity_GG_27299_c0_g1_i9,blat.proc3825172.chain_2895	3	STRG.18207.1,STRG.18207.2,STRG.18207.3,blat.proc3825172.chain_2889,blat.proc3825172.chain_2890,blat.proc3825172.chain_2893	6
scaffold_1	starts_in_intron	3614568	3614568	-	asmbl_166	none	blat.proc3825148.chain_228	1	STRG.228.1,blat.proc3825148.chain_227	2
scaffold_12	spliced_intron	12003833	12004558	-	asmbl_8845	none	STRG.15112.1,Trinity_GG_8447_c0_g1_i1,blat.proc3825154.chain_3632	3	STRG.15112.2,STRG.15112.3,blat.proc3825154.chain_3633,blat.proc3825154.chain_3634	4
scaffold_4	spliced_intron	4911794	4911995	+	asmbl_41313,asmbl_41314	none	STRG.4387.1,STRG.4387.2,blat.proc3825166.chain_866	3	Trinity_GG_19752_c0_g1_i3,blat.proc3825166.chain_862,blat.proc3825166.chain_864	3
scaffold_9	alt_acceptor	3632086	3632087	-	asmbl_54916	none	STRG.10966.2	1	STRG.10966.1,blat.proc3825152.chain_3258	2
scaffold_28	starts_in_intron	6558549	6558549	-	asmbl_38362	none	blat.proc3825162.chain_2943	1	STRG.29755.1,STRG.29755.2,blat.proc3825162.chain_2944	3
scaffold_19	retained_exon	8218169	8218290	-	asmbl_22283,asmbl_22284,asmbl_22286	none	STRG.22275.1,STRG.22275.2,blat.proc3825158.chain_3083,blat.proc3825158.chain_3084,blat.proc3825158.chain_3085	5	STRG.22275.3	1
scaffold_25	alt_acceptor	5156150	5156151	-	asmbl_34244,asmbl_34246,asmbl_34247,asmbl_34248,asmbl_34250,asmbl_34251	none	STRG.27443.1,STRG.27443.2,blat.proc3825162.chain_805,blat.proc3825162.chain_806,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809,blat.proc3825162.chain_810	8	STRG.27443.3	1
scaffold_2	starts_in_intron	6464934	6464934	+	asmbl_24469	none	STRG.2011.2,Trinity_GG_18413_c1_g1_i1,blat.proc3825164.chain_2094	3	STRG.2011.1,blat.proc3825164.chain_2091	2
scaffold_2	alt_acceptor	6349292	6349293	-	asmbl_23196	none	STRG.2001.2	1	STRG.2001.1,Trinity_GG_1061_c0_g1_i1,Trinity_GG_1061_c0_g1_i2,blat.proc3825148.chain_1893,blat.proc3825148.chain_1894	5
scaffold_27	spliced_intron	931032	931338	-	asmbl_36720,asmbl_36722	none	STRG.28588.3,blat.proc3825162.chain_1835	2	STRG.28588.1,STRG.28588.2,STRG.28588.4,blat.proc3825162.chain_1833,blat.proc3825162.chain_1834,blat.proc3825162.chain_1836	6
scaffold_4	starts_in_intron	5280252	5280252	-	asmbl_42589,asmbl_42590	none	STRG.4425.1,STRG.4425.3	2	STRG.4425.2,blat.proc3825150.chain_680,blat.proc3825150.chain_681	3
scaffold_25	retained_exon	7832383	7832580	-	asmbl_34410	none	STRG.27606.1	1	STRG.27606.2	1
scaffold_19	alt_acceptor	6238941	6238942	-	asmbl_22200	none	STRG.22164.1	1	blat.proc3825158.chain_2965	1
scaffold_11	starts_in_intron	17070288	17070288	-	asmbl_7244	none	blat.proc3825154.chain_2804	1	STRG.14371.1,STRG.14371.2,STRG.14371.3,blat.proc3825154.chain_2803,blat.proc3825154.chain_2805,blat.proc3825154.chain_2806	6
scaffold_2	alt_donor	16403257	16403258	+	asmbl_25139	none	blat.proc3825164.chain_2873	1	STRG.2582.1,blat.proc3825164.chain_2870,blat.proc3825164.chain_2872	3
scaffold_11	alternate_exon	11316980	11317158	+	asmbl_5965	none	STRG.14080.2,blat.proc3825170.chain_2625	2	STRG.14080.1,blat.proc3825170.chain_2626	2
scaffold_7	starts_in_intron	2317303	2317303	+	asmbl_49635	none	STRG.8674.1,Trinity_GG_22069_c1_g1_i1,blat.proc3825168.chain_1148	3	Trinity_GG_22069_c0_g1_i2	1
scaffold_14	alt_acceptor	11386935	11386936	-	asmbl_13478	none	STRG.17477.3,blat.proc3825156.chain_2295	2	STRG.17477.1,STRG.17477.2,blat.proc3825156.chain_2291,blat.proc3825156.chain_2292	4
scaffold_7	ends_in_intron	8694315	8694315	+	asmbl_50037	none	STRG.9104.1,Trinity_GG_22340_c0_g1_i1,blat.proc3825168.chain_1580	3	Trinity_GG_22340_c0_g1_i2,blat.proc3825168.chain_1579	2
scaffold_18	alternate_exon	1391031	1391632	-	asmbl_19620	none	blat.proc3825158.chain_2006	1	STRG.21025.4,blat.proc3825158.chain_2003	2
scaffold_22	retained_exon	9244217	9244318	+	asmbl_30304	none	STRG.25270.2,blat.proc3825176.chain_2348	2	STRG.25270.1,blat.proc3825176.chain_2349	2
scaffold_27	alternate_exon	974643	975044	+	asmbl_35970	none	Trinity_GG_33133_c0_g1_i12,blat.proc3825178.chain_1712	2	Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	2
scaffold_20	alt_acceptor	5907865	5907866	+	asmbl_26646	none	STRG.23196.1	1	STRG.23196.3	1
scaffold_2	starts_in_intron	17708973	17708973	-	asmbl_23740,asmbl_23741	none	STRG.2662.2,STRG.2662.3	2	STRG.2662.1,blat.proc3825148.chain_2600,blat.proc3825148.chain_2601	3
scaffold_8	retained_intron	3433549	3433602	+	asmbl_52761	none	STRG.9839.1,Trinity_GG_22785_c0_g1_i2,blat.proc3825168.chain_2373,blat.proc3825168.chain_2374	4	STRG.9839.2	1
scaffold_25	ends_in_intron	982959	982959	+	asmbl_33362	none	blat.proc3825178.chain_291	1	STRG.27153.1	1
scaffold_4	spliced_intron	4890208	4890382	-	asmbl_42539	none	STRG.4382.1,blat.proc3825150.chain_617	2	Trinity_GG_2453_c0_g1_i1,blat.proc3825150.chain_616	2
scaffold_5	alternate_exon	11629010	11629028	-	asmbl_44419,asmbl_44420	none	blat.proc3825150.chain_2639,blat.proc3825150.chain_2641	2	blat.proc3825150.chain_2638,blat.proc3825150.chain_2640,blat.proc3825150.chain_2642,blat.proc3825150.chain_2643	4
scaffold_10	ends_in_intron	6597932	6597932	-	asmbl_4479	none	blat.proc3825154.chain_992	1	STRG.12480.1,STRG.12480.2,blat.proc3825154.chain_991	3
scaffold_21	retained_exon	6392213	6392242	+	asmbl_28635,asmbl_28636	none	blat.proc3825176.chain_1279,blat.proc3825176.chain_1280	2	STRG.24166.1,blat.proc3825176.chain_1282	2
scaffold_8	starts_in_intron	2660768	2660768	-	asmbl_51716	none	Trinity_GG_5459_c0_g1_i1	1	STRG.9803.1,blat.proc3825152.chain_2066	2
scaffold_23	alt_acceptor	7702646	7702647	+	asmbl_31725	none	STRG.26086.3	1	STRG.26086.1,STRG.26086.2	2
scaffold_6	starts_in_intron	3054377	3054377	+	asmbl_46800	none	STRG.7319.2	1	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4
scaffold_19	retained_intron	678886	678963	+	asmbl_21201	none	Trinity_GG_29401_c0_g1_i4,blat.proc3825174.chain_2898	2	STRG.21850.1,blat.proc3825174.chain_2900	2
scaffold_20	alt_donor	11287208	11287209	+	asmbl_27024,asmbl_27025	none	STRG.23634.1,Trinity_GG_30350_c0_g1_i2,blat.proc3825176.chain_746,blat.proc3825176.chain_747	4	STRG.23634.2,STRG.23634.3	2
scaffold_14	alt_donor	10479149	10479150	+	asmbl_12322	none	STRG.17398.1,blat.proc3825172.chain_2142	2	STRG.17398.3	1
scaffold_16	retained_intron	4597484	4597636	-	asmbl_17064	none	blat.proc3825158.chain_400	1	STRG.19244.1,blat.proc3825158.chain_399	2
scaffold_14	alt_acceptor	8277344	8277345	+	asmbl_12214	none	STRG.17251.1,blat.proc3825172.chain_2029	2	STRG.17251.4,blat.proc3825172.chain_2028	2
scaffold_2	skipped_exon	12653089	12653786	-	asmbl_23473	none	STRG.2311.2,Trinity_GG_1253_c0_g1_i1,blat.proc3825148.chain_2270	3	STRG.2311.1,Trinity_GG_1253_c0_g1_i2,blat.proc3825148.chain_2269	3
scaffold_5	alt_acceptor	10245343	10245344	-	asmbl_44330	none	STRG.6325.2	1	STRG.6325.1,Trinity_GG_3535_c0_g1_i2,blat.proc3825150.chain_2473	3
scaffold_6	alt_donor	1740498	1740499	+	asmbl_46733	none	blat.proc3825150.chain_3232	1	STRG.7229.1	1
scaffold_4	alt_acceptor	4498819	4498820	-	asmbl_42521	none	STRG.4352.2	1	STRG.4352.1,Trinity_GG_2437_c0_g1_i2,blat.proc3825150.chain_588	3
scaffold_6	retained_exon	12117070	12117099	+	asmbl_47373	none	STRG.7985.3,Trinity_GG_21681_c0_g1_i2,blat.proc3825168.chain_429	3	Trinity_GG_21681_c0_g1_i3,blat.proc3825168.chain_428	2
scaffold_6	ends_in_intron	854257	854257	-	asmbl_48078	none	Trinity_GG_3998_c0_g2_i1	1	STRG.7151.1,STRG.7151.3,STRG.7151.4,blat.proc3825150.chain_3267,blat.proc3825150.chain_3268	5
scaffold_22	alt_donor	2399110	2399111	+	asmbl_29939,asmbl_29941,asmbl_29942	none	STRG.24781.2,blat.proc3825176.chain_1827,blat.proc3825176.chain_1828	3	STRG.24781.1,blat.proc3825176.chain_1825	2
scaffold_21	spliced_intron	7914216	7914320	-	asmbl_27865	none	STRG.24325.4,blat.proc3825160.chain_1386	2	STRG.24325.2,blat.proc3825160.chain_1387	2
scaffold_18	alternate_exon	1512505	1512721	+	asmbl_20359	none	STRG.21044.2	1	STRG.21044.4	1
scaffold_11	alternate_exon	16250540	16250857	+	asmbl_6141	none	STRG.14327.1,Trinity_GG_25170_c1_g1_i1,blat.proc3825170.chain_2793	3	STRG.14327.2,STRG.14327.3	2
scaffold_13	spliced_intron	11581870	11581964	+	asmbl_11280,asmbl_11282,asmbl_11283	none	STRG.16314.1,blat.proc3825172.chain_1012,blat.proc3825172.chain_1013,blat.proc3825172.chain_1014	4	blat.proc3825172.chain_1011	1
scaffold_8	alt_donor	17628749	17628750	-	asmbl_52475	none	STRG.10679.2	1	STRG.10679.1,blat.proc3825152.chain_2947	2
scaffold_11	spliced_intron	4756626	4756833	+	asmbl_5518,asmbl_5520,asmbl_5521	none	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2116,blat.proc3825170.chain_2117	4	blat.proc3825170.chain_2118	1
scaffold_21	alt_acceptor	7491270	7491271	+	asmbl_28741	none	STRG.24280.1,blat.proc3825176.chain_1494	2	blat.proc3825176.chain_1493	1
scaffold_9	spliced_intron	12112505	12113296	+	asmbl_54409	none	STRG.11537.1,blat.proc3825170.chain_366	2	blat.proc3825170.chain_367	1
scaffold_4	spliced_intron	5772794	5774235	-	asmbl_42638	none	STRG.4471.1,Trinity_GG_2508_c0_g1_i1,blat.proc3825150.chain_722	3	STRG.4471.2,blat.proc3825150.chain_721	2
scaffold_11	alt_acceptor	7886945	7886946	+	asmbl_5688,asmbl_5689	none	STRG.13792.1,STRG.13792.2,Trinity_GG_24911_c0_g1_i1,Trinity_GG_24911_c0_g1_i3,blat.proc3825170.chain_2334,blat.proc3825170.chain_2335	6	STRG.13792.3,Trinity_GG_24911_c0_g1_i4,blat.proc3825170.chain_2336	3
scaffold_4	starts_in_intron	12748449	12748449	+	asmbl_41747	none	Trinity_GG_20052_c0_g1_i1,blat.proc3825166.chain_1343	2	STRG.4917.1,blat.proc3825166.chain_1342	2
scaffold_23	ends_in_intron	10888243	10888243	+	asmbl_31883	none	blat.proc3825176.chain_3248	1	STRG.26287.1,STRG.26287.2,blat.proc3825176.chain_3250	3
scaffold_28	alt_donor	4209697	4209698	+	asmbl_37518,asmbl_37519,asmbl_37520	none	STRG.29616.1,STRG.29616.4,STRG.29616.5,blat.proc3825178.chain_2809,blat.proc3825178.chain_2815	5	STRG.29616.6,blat.proc3825178.chain_2813	2
scaffold_15	alt_donor	4787057	4787058	-	asmbl_14160	none	STRG.18195.1	1	STRG.18195.2,blat.proc3825156.chain_3029	2
scaffold_10	ends_in_intron	1445989	1445989	-	asmbl_4059	none	blat.proc3825154.chain_571	1	STRG.12017.1,Trinity_GG_6685_c0_g1_i4,blat.proc3825154.chain_568,blat.proc3825154.chain_569	4
scaffold_28	alternate_exon	8317707	8317967	-	asmbl_38455	none	STRG.29908.3	1	STRG.29908.1,STRG.29908.2,blat.proc3825162.chain_3098	3
scaffold_6	retained_intron	11668496	11669586	+	asmbl_47356	none	Trinity_GG_21670_c0_g1_i1,blat.proc3825168.chain_406	2	STRG.7960.2	1
scaffold_5	ends_in_intron	15675070	15675070	+	asmbl_46003	none	Trinity_GG_20958_c0_g1_i5,blat.proc3825166.chain_2860	2	STRG.6761.1,blat.proc3825166.chain_2861,blat.proc3825166.chain_2862	3
scaffold_7	alt_acceptor	1456141	1456142	-	asmbl_50738	none	STRG.8644.1,blat.proc3825152.chain_1144	2	STRG.8644.2	1
scaffold_27	ends_in_intron	5582272	5582272	+	asmbl_36347	none	blat.proc3825178.chain_2182	1	STRG.28971.1,blat.proc3825178.chain_2180,blat.proc3825178.chain_2181	3
scaffold_7	spliced_intron	4047076	4047197	-	asmbl_50848	none	STRG.8803.3,blat.proc3825152.chain_1276	2	blat.proc3825152.chain_1274	1
scaffold_13	retained_intron	3054628	3054794	-	asmbl_9510,asmbl_9511	none	STRG.15613.1,STRG.15613.3,Trinity_GG_8738_c0_g1_i1,blat.proc3825156.chain_464,blat.proc3825156.chain_465	5	STRG.15613.2	1
scaffold_13	retained_intron	3735854	3736052	+	asmbl_10738	none	blat.proc3825172.chain_449	1	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_445,blat.proc3825172.chain_446,blat.proc3825172.chain_448	12
scaffold_28	spliced_intron	2811349	2811511	-	asmbl_38086,asmbl_38088,asmbl_38092	none	STRG.29471.2,STRG.29471.3,blat.proc3825162.chain_2598	3	STRG.29471.4,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	3
scaffold_13	retained_intron	16460089	16460350	-	asmbl_10303	none	STRG.16703.2,blat.proc3825156.chain_1486	2	STRG.16703.4,blat.proc3825156.chain_1485	2
scaffold_2	skipped_exon	7214724	7216790	+	asmbl_24541	none	STRG.2054.4,Trinity_GG_18495_c0_g1_i3,blat.proc3825164.chain_2271	3	STRG.2054.1,STRG.2054.2,Trinity_GG_18495_c0_g1_i7,blat.proc3825164.chain_2268	4
scaffold_9	spliced_intron	14817894	14818073	-	asmbl_55499	none	STRG.11702.5	1	STRG.11702.2,STRG.11702.3,STRG.11702.4,STRG.11702.6,Trinity_GG_6457_c0_g1_i1,blat.proc3825154.chain_159,blat.proc3825154.chain_161,blat.proc3825154.chain_163,blat.proc3825154.chain_164	9
scaffold_14	ends_in_intron	6397920	6397920	-	asmbl_13124	none	Trinity_GG_9592_c0_g1_i1,blat.proc3825156.chain_1906	2	STRG.17086.1,blat.proc3825156.chain_1905	2
scaffold_17	alt_donor	7969535	7969536	-	asmbl_18066	none	STRG.20416.1,blat.proc3825158.chain_1467	2	STRG.20416.2,STRG.20416.3	2
scaffold_23	alternate_exon	4100078	4100309	-	asmbl_30829	none	STRG.25826.3,blat.proc3825160.chain_3032	2	STRG.25826.1,STRG.25826.2,blat.proc3825160.chain_3030	3
scaffold_25	alt_donor	5158102	5158103	-	asmbl_34244,asmbl_34246,asmbl_34249,asmbl_34250	none	STRG.27443.1,STRG.27443.2,STRG.27443.3,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809	6	blat.proc3825162.chain_806	1
scaffold_4	alt_acceptor	18554641	18554642	-	asmbl_43380,asmbl_43381,asmbl_43382	none	STRG.5460.1,blat.proc3825150.chain_1650,blat.proc3825150.chain_1651,blat.proc3825150.chain_1652	4	STRG.5460.2	1
scaffold_18	spliced_intron	2565486	2565566	-	asmbl_19728	none	STRG.21128.1,blat.proc3825158.chain_2063	2	STRG.21128.2	1
scaffold_19	skipped_exon	12337564	12338070	+	asmbl_21787	none	STRG.22564.2,blat.proc3825174.chain_3512	2	STRG.22564.1,blat.proc3825174.chain_3511,blat.proc3825174.chain_3513	3
scaffold_10	starts_in_intron	7113627	7113627	+	asmbl_3264	none	Trinity_GG_24220_c0_g1_i3,blat.proc3825170.chain_1137	2	STRG.12531.1,STRG.12531.2,STRG.12531.4,blat.proc3825170.chain_1136,blat.proc3825170.chain_1139,blat.proc3825170.chain_1140	6
scaffold_15	starts_in_intron	12041932	12041932	+	asmbl_15517	none	Trinity_GG_27518_c0_g1_i3,blat.proc3825172.chain_3252	2	STRG.18663.1,STRG.18663.2	2
scaffold_5	skipped_exon	16645579	16646640	+	asmbl_46114	none	STRG.6855.1,blat.proc3825166.chain_3029	2	STRG.6855.2,blat.proc3825166.chain_3027	2
scaffold_13	starts_in_intron	3445620	3445620	-	asmbl_9540	none	STRG.15655.2,blat.proc3825156.chain_525	2	STRG.15655.1,blat.proc3825156.chain_526	2
scaffold_1	ends_in_intron	3620743	3620743	+	asmbl_1616,asmbl_1617	none	STRG.229.2,blat.proc3825164.chain_357	2	STRG.229.1,blat.proc3825164.chain_354,blat.proc3825164.chain_355	3
scaffold_7	alternate_exon	17736285	17736348	+	asmbl_50493	none	STRG.9619.2	1	STRG.9619.1,blat.proc3825168.chain_2072,blat.proc3825168.chain_2074	3
scaffold_5	alt_acceptor	8368146	8368147	+	asmbl_45539	none	STRG.6177.2	1	STRG.6177.1,Trinity_GG_20682_c0_g1_i1,blat.proc3825166.chain_2386,blat.proc3825166.chain_2387	4
scaffold_11	alt_acceptor	2839534	2839535	+	asmbl_5385	none	STRG.13428.1,Trinity_GG_24640_c0_g1_i1,blat.proc3825170.chain_1884	3	STRG.13428.2,Trinity_GG_24640_c0_g1_i2,blat.proc3825170.chain_1885	3
scaffold_7	alt_donor	9392970	9392971	+	asmbl_50080	none	STRG.9142.1,Trinity_GG_22390_c0_g1_i1,blat.proc3825168.chain_1662	3	STRG.9142.2,Trinity_GG_22390_c0_g1_i2,blat.proc3825168.chain_1663	3
scaffold_16	retained_intron	7910328	7910505	+	asmbl_16361	none	Trinity_GG_27913_c0_g1_i2,blat.proc3825174.chain_281	2	STRG.19445.1,Trinity_GG_27913_c0_g1_i1,blat.proc3825174.chain_282,blat.proc3825174.chain_283	4
scaffold_23	spliced_intron	10975035	10975280	+	asmbl_31898,asmbl_31900,asmbl_31905,asmbl_31906	none	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5	STRG.26307.2,Trinity_GG_31796_c0_g1_i8,blat.proc3825176.chain_3180	3
scaffold_23	alt_donor	7279355	7279356	-	asmbl_31024,asmbl_31025	none	STRG.26052.2,blat.proc3825160.chain_3145	2	STRG.26052.3	1
scaffold_8	retained_exon	2851101	2851214	-	asmbl_51718	none	STRG.9813.2,blat.proc3825152.chain_2093	2	STRG.9813.1,blat.proc3825152.chain_2092	2
scaffold_2174	spliced_intron	839	882	-	asmbl_29059	none	STRG.30718.2	1	STRG.30718.1	1
scaffold_23	retained_intron	10978895	10979242	+	asmbl_31899,asmbl_31900,asmbl_31901,asmbl_31903,asmbl_31904	none	STRG.26307.2,STRG.26307.4,Trinity_GG_31796_c0_g1_i6,blat.proc3825176.chain_3177,blat.proc3825176.chain_3179,blat.proc3825176.chain_3181	6	STRG.26307.1,blat.proc3825176.chain_3178,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_5	starts_in_intron	7820806	7820806	+	asmbl_45516	none	Trinity_GG_20673_c0_g1_i1,blat.proc3825166.chain_2370	2	STRG.6162.1,blat.proc3825166.chain_2371	2
scaffold_2	retained_intron	892931	893048	+	asmbl_24136,asmbl_24137,asmbl_24138,asmbl_24139,asmbl_24145	none	STRG.1566.1,STRG.1566.2,STRG.1566.3,STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725,blat.proc3825164.chain_1726,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730,blat.proc3825164.chain_1731	10	STRG.1566.4,blat.proc3825164.chain_1727	2
scaffold_16	retained_intron	3563930	3564366	-	asmbl_16984,asmbl_16985	none	STRG.19171.1,blat.proc3825158.chain_300,blat.proc3825158.chain_301	3	STRG.19171.2,blat.proc3825158.chain_302	2
scaffold_23	alt_donor	3053574	3053575	-	asmbl_30783	none	STRG.25753.1,blat.proc3825160.chain_2895	2	STRG.25753.2,blat.proc3825160.chain_2894	2
scaffold_19	starts_in_intron	5459081	5459081	-	asmbl_22163	none	STRG.22108.2	1	STRG.22108.1,blat.proc3825158.chain_2975	2
scaffold_825	alt_acceptor	3691	3692	+	asmbl_53684	none	STRG.30482.1	1	STRG.30482.2	1
scaffold_6	retained_exon	14117086	14117196	+	asmbl_47582	none	STRG.8177.1	1	STRG.8177.2	1
scaffold_2	alt_acceptor	1258206	1258207	-	asmbl_22840	none	blat.proc3825164.chain_1742	1	STRG.1587.1	1
scaffold_20	alt_donor	1489711	1489712	+	asmbl_26418	none	STRG.22869.2	1	STRG.22869.1,STRG.22869.3,STRG.22869.4,STRG.22869.6	4
scaffold_5	alt_acceptor	18824247	18824248	+	asmbl_46294	none	STRG.7012.1,Trinity_GG_21167_c0_g1_i2,blat.proc3825166.chain_3225	3	STRG.7012.2,Trinity_GG_21167_c0_g1_i1,blat.proc3825166.chain_3224	3
scaffold_11	starts_in_intron	5505547	5505547	-	asmbl_6669	none	blat.proc3825154.chain_2190	1	STRG.13621.1,blat.proc3825154.chain_2191	2
scaffold_14	alt_acceptor	1069874	1069875	+	asmbl_11791,asmbl_11792,asmbl_11796,asmbl_11798	none	STRG.16766.1,STRG.16766.2,blat.proc3825172.chain_1535,blat.proc3825172.chain_1537	4	STRG.16766.3,STRG.16766.4,STRG.16766.5,blat.proc3825172.chain_1536,blat.proc3825172.chain_1539	5
scaffold_10	retained_exon	6018625	6018719	-	asmbl_4416	none	STRG.12434.1,blat.proc3825154.chain_1008	2	blat.proc3825154.chain_1005	1
scaffold_17	ends_in_intron	12397971	12397971	-	asmbl_18333	none	Trinity_GG_11636_c0_g1_i4,blat.proc3825158.chain_1701	2	STRG.20766.1,STRG.20766.2	2
scaffold_26	spliced_intron	5874040	5874142	-	asmbl_35632	none	STRG.28291.2,Trinity_GG_15831_c0_g1_i1,blat.proc3825162.chain_1536	3	STRG.28291.1	1
scaffold_19	spliced_intron	2781526	2781716	+	asmbl_21276,asmbl_21277,asmbl_21278,asmbl_21281,asmbl_21282	none	STRG.21962.1,STRG.21962.2,STRG.21962.3,STRG.21962.4,STRG.21962.5	5	blat.proc3825174.chain_2998	1
scaffold_23	spliced_intron	2164190	2164417	-	asmbl_30701	none	STRG.25690.2	1	STRG.25690.1	1
scaffold_20	starts_in_intron	5914673	5914673	-	asmbl_25787	none	blat.proc3825160.chain_274	1	STRG.23197.1,blat.proc3825160.chain_273	2
scaffold_16	skipped_exon	1779104	1781016	+	asmbl_16088	none	STRG.19102.3,blat.proc3825174.chain_21	2	STRG.19102.1,blat.proc3825174.chain_22	2
scaffold_11	retained_exon	14532929	14532976	+	asmbl_6090	none	STRG.14252.2,Trinity_GG_25124_c0_g1_i1,blat.proc3825170.chain_2710	3	STRG.14252.3,Trinity_GG_25124_c0_g1_i3,blat.proc3825170.chain_2707	3
scaffold_13	retained_exon	12460893	12460942	-	asmbl_10136,asmbl_10137	none	STRG.16372.2,STRG.16372.3,blat.proc3825156.chain_1192	3	blat.proc3825156.chain_1193	1
scaffold_7	skipped_exon	5183050	5183703	-	asmbl_50876	none	STRG.8855.3	1	STRG.8855.1,blat.proc3825152.chain_1305	2
scaffold_10	retained_intron	4659	4886	+	asmbl_2840	none	STRG.11903.2,Trinity_GG_23939_c0_g1_i1,blat.proc3825170.chain_675	3	STRG.11903.1,blat.proc3825170.chain_674	2
scaffold_10	retained_intron	774816	774931	+	asmbl_2870,asmbl_2873,asmbl_2875,asmbl_2876	none	blat.proc3825170.chain_654,blat.proc3825170.chain_655,blat.proc3825170.chain_660,blat.proc3825170.chain_661	4	blat.proc3825170.chain_659	1
scaffold_14	starts_in_intron	6938792	6938792	+	asmbl_12121	none	blat.proc3825172.chain_1918	1	STRG.17137.1,blat.proc3825172.chain_1916,blat.proc3825172.chain_1917	3
scaffold_21	ends_in_intron	4945202	4945202	+	asmbl_28542	none	blat.proc3825176.chain_1192	1	STRG.24044.1,blat.proc3825176.chain_1190,blat.proc3825176.chain_1191	3
scaffold_16	spliced_intron	5395173	5395337	+	asmbl_16211,asmbl_16213,asmbl_16214	none	STRG.19288.1,Trinity_GG_27867_c0_g1_i3,blat.proc3825174.chain_180,blat.proc3825174.chain_181,blat.proc3825174.chain_183	5	Trinity_GG_27867_c0_g1_i1,blat.proc3825174.chain_182	2
scaffold_16	starts_in_intron	8589948	8589948	+	asmbl_16412	none	blat.proc3825174.chain_371	1	STRG.19490.1,STRG.19490.2,STRG.19490.3,STRG.19490.7,blat.proc3825174.chain_372,blat.proc3825174.chain_373,blat.proc3825174.chain_375	7
scaffold_13	alt_donor	6949232	6949233	-	asmbl_9823	none	STRG.15984.3	1	STRG.15984.2,STRG.15984.4,STRG.15984.5	3
scaffold_13	alt_acceptor	3246756	3246757	+	asmbl_10669,asmbl_10673	none	STRG.15630.1,blat.proc3825172.chain_406,blat.proc3825172.chain_407	3	STRG.15630.2	1
scaffold_20	retained_exon	9517588	9517614	+	asmbl_26859	none	STRG.23488.2,blat.proc3825176.chain_606	2	STRG.23488.1,blat.proc3825176.chain_607	2
scaffold_167	spliced_intron	11120	11315	-	asmbl_17619	none	STRG.30210.2,blat.proc3825162.chain_3354	2	STRG.30210.1,Trinity_GG_16951_c0_g1_i1,Trinity_GG_16951_c0_g1_i2,Trinity_GG_16951_c0_g1_i6,Trinity_GG_16951_c0_g1_i8,blat.proc3825162.chain_3351,blat.proc3825162.chain_3352,blat.proc3825162.chain_3353,blat.proc3825162.chain_3355	9
scaffold_6	spliced_intron	17524201	17525243	+	asmbl_47764	none	STRG.8455.4,blat.proc3825168.chain_892	2	STRG.8455.1,STRG.8455.2,STRG.8455.3,Trinity_GG_21946_c0_g1_i2,Trinity_GG_21946_c1_g1_i4,blat.proc3825168.chain_894	6
scaffold_12	alt_donor	12397424	12397425	-	asmbl_8881	none	STRG.15147.3	1	STRG.15147.1,STRG.15147.2,blat.proc3825154.chain_3647	3
scaffold_8	alt_acceptor	3615885	3615886	+	asmbl_52784	none	STRG.9863.2,blat.proc3825168.chain_2408	2	STRG.9863.3,STRG.9863.4	2
scaffold_1	starts_in_intron	11825787	11825787	+	asmbl_2159	none	Trinity_GG_17822_c0_g1_i2,blat.proc3825164.chain_988	2	STRG.801.1,STRG.801.2,Trinity_GG_17822_c0_g1_i1,Trinity_GG_17822_c0_g1_i3,blat.proc3825164.chain_986,blat.proc3825164.chain_987	6
scaffold_2	starts_in_intron	4865822	4865822	-	asmbl_23108	none	blat.proc3825148.chain_1888	1	STRG.1908.1,blat.proc3825148.chain_1889	2
scaffold_24	alternate_exon	162722	163275	-	asmbl_32698	none	Trinity_GG_14715_c0_g1_i1,blat.proc3825160.chain_3448	2	STRG.26320.1	1
scaffold_7	alt_donor	18771327	18771328	-	asmbl_51505	none	blat.proc3825152.chain_1978	1	blat.proc3825152.chain_1977	1
scaffold_23	alternate_exon	8811804	8812036	+	asmbl_31785	none	STRG.26148.3	1	STRG.26148.1,STRG.26148.2,blat.proc3825176.chain_3119,blat.proc3825176.chain_3122	4
scaffold_26	alternate_exon	9312201	9312441	+	asmbl_35214,asmbl_35215,asmbl_35217,asmbl_35226	none	STRG.28487.2,blat.proc3825178.chain_1610,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	5	STRG.28487.3,blat.proc3825178.chain_1611	2
scaffold_1	alt_acceptor	2789626	2789627	+	asmbl_1553	none	STRG.181.1,blat.proc3825164.chain_237	2	STRG.181.2,blat.proc3825164.chain_236	2
scaffold_3	starts_in_intron	17142893	17142893	+	asmbl_40653	none	Trinity_GG_19535_c0_g1_i1	1	STRG.3951.2	1
scaffold_22	starts_in_intron	10984539	10984539	-	asmbl_29638	none	blat.proc3825160.chain_2616	1	STRG.25437.1,STRG.25437.3,Trinity_GG_14239_c1_g1_i1,Trinity_GG_14239_c1_g1_i2,Trinity_GG_14239_c1_g1_i3,blat.proc3825160.chain_2613,blat.proc3825160.chain_2614,blat.proc3825160.chain_2615	8
scaffold_6	alt_acceptor	10182614	10182615	-	asmbl_48671	none	Trinity_GG_4441_c0_g1_i2,blat.proc3825152.chain_234	2	STRG.7858.1,STRG.7858.2,Trinity_GG_4441_c0_g1_i3,Trinity_GG_4441_c0_g1_i4,blat.proc3825152.chain_233,blat.proc3825152.chain_235	6
scaffold_3	skipped_exon	16076915	16079016	-	asmbl_39475	none	STRG.3896.4	1	STRG.3896.1,STRG.3896.2,STRG.3896.3,blat.proc3825150.chain_7,blat.proc3825150.chain_8	5
scaffold_12	spliced_intron	7113789	7113837	+	asmbl_7714	none	blat.proc3825170.chain_3296	1	STRG.14780.1,blat.proc3825170.chain_3297,blat.proc3825170.chain_3298	3
scaffold_21	starts_in_intron	3726586	3726586	-	asmbl_27531	none	blat.proc3825160.chain_1090	1	STRG.23962.1,STRG.23962.2,STRG.23962.3,blat.proc3825160.chain_1088,blat.proc3825160.chain_1089,blat.proc3825160.chain_1091	6
scaffold_15	retained_intron	2557700	2557737	-	asmbl_14018	none	STRG.18039.1	1	STRG.18039.2	1
scaffold_9	ends_in_intron	6423353	6423353	-	asmbl_55058	none	Trinity_GG_6195_c1_g2_i1,blat.proc3825152.chain_3421	2	STRG.11177.1,Trinity_GG_6195_c1_g1_i1,blat.proc3825152.chain_3420	3
scaffold_15	spliced_intron	15908373	15908721	-	asmbl_14807,asmbl_14809,asmbl_14811,asmbl_14812,asmbl_14813,asmbl_14814	none	STRG.18975.1,STRG.18975.2,blat.proc3825158.chain_63,blat.proc3825158.chain_64,blat.proc3825158.chain_65,blat.proc3825158.chain_66,blat.proc3825158.chain_67	7	blat.proc3825158.chain_61	1
scaffold_27	spliced_intron	2998365	2998500	+	asmbl_36150,asmbl_36151,asmbl_36152,asmbl_36154,asmbl_36155,asmbl_36156,asmbl_36157,asmbl_36158	none	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1902,blat.proc3825178.chain_1903,blat.proc3825178.chain_1904,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	10	blat.proc3825178.chain_1905	1
scaffold_25	spliced_intron	3631412	3631606	+	asmbl_33436,asmbl_33437	none	STRG.27312.1,STRG.27312.2,blat.proc3825178.chain_426,blat.proc3825178.chain_427,blat.proc3825178.chain_429	5	blat.proc3825178.chain_432	1
scaffold_21	alt_donor	7008750	7008751	-	asmbl_27772,asmbl_27775,asmbl_27776,asmbl_27777,asmbl_27778	none	STRG.24233.1,STRG.24233.2,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393,blat.proc3825160.chain_1394,blat.proc3825160.chain_1395	6	blat.proc3825160.chain_1391	1
scaffold_1	alternate_exon	18339438	18339505	+	asmbl_2556	none	STRG.1292.3	1	STRG.1292.1,STRG.1292.2,STRG.1292.4,blat.proc3825164.chain_1358,blat.proc3825164.chain_1359	5
scaffold_9	alt_acceptor	12493867	12493868	-	asmbl_55384	none	STRG.11571.2	1	STRG.11571.1,blat.proc3825152.chain_3745	2
scaffold_7	retained_intron	9833548	9833658	-	asmbl_51079,asmbl_51080	none	STRG.9181.1,STRG.9181.2,blat.proc3825152.chain_1508,blat.proc3825152.chain_1509	4	STRG.9181.3,blat.proc3825152.chain_1507	2
scaffold_15	alternate_exon	1961214	1962522	+	asmbl_15040,asmbl_15041	none	STRG.17992.1,STRG.17992.2	2	blat.proc3825172.chain_2697	1
scaffold_17	retained_intron	14627370	14627619	-	asmbl_18439	none	blat.proc3825158.chain_1902	1	STRG.20931.1,STRG.20931.4,blat.proc3825158.chain_1899	3
scaffold_10	ends_in_intron	1174502	1174502	+	asmbl_2916,asmbl_2917	none	STRG.12009.3,STRG.12009.4,blat.proc3825170.chain_767	3	STRG.12009.1,STRG.12009.2,blat.proc3825170.chain_768,blat.proc3825170.chain_769,blat.proc3825170.chain_770	5
scaffold_13	alt_acceptor	7192853	7192854	-	asmbl_9858,asmbl_9863,asmbl_9864,asmbl_9866	none	STRG.16016.1,STRG.16016.2,STRG.16016.3,blat.proc3825156.chain_957,blat.proc3825156.chain_958,blat.proc3825156.chain_960,blat.proc3825156.chain_961	7	STRG.16016.5	1
scaffold_18	retained_intron	9787942	9788236	-	asmbl_20084,asmbl_20085	none	Trinity_GG_12062_c0_g1_i2,blat.proc3825158.chain_2495,blat.proc3825158.chain_2496	3	STRG.21584.1	1
scaffold_13	retained_intron	738856	739000	+	asmbl_10513	none	STRG.15461.2,blat.proc3825172.chain_191	2	STRG.15461.3	1
scaffold_19	alt_acceptor	5457769	5457770	-	asmbl_22162,asmbl_22165	none	STRG.22108.1,blat.proc3825158.chain_2974,blat.proc3825158.chain_2975	3	STRG.22108.2	1
scaffold_14	alternate_exon	14386295	14386977	+	asmbl_12543	none	STRG.17700.3,blat.proc3825172.chain_2406	2	STRG.17700.1	1
scaffold_28	alt_acceptor	2810466	2810467	-	asmbl_38087,asmbl_38093	none	STRG.29471.1,blat.proc3825162.chain_2599	2	STRG.29471.2	1
scaffold_6	starts_in_intron	17167321	17167321	+	asmbl_47733	none	STRG.8422.1	1	Trinity_GG_21893_c0_g1_i1,blat.proc3825168.chain_794	2
scaffold_1	starts_in_intron	20711494	20711494	-	asmbl_1192	none	blat.proc3825148.chain_1367	1	STRG.1418.1,blat.proc3825148.chain_1368	2
scaffold_4	alt_donor	19539874	19539875	-	asmbl_43450	none	blat.proc3825150.chain_1720	1	STRG.5541.3	1
scaffold_11	spliced_intron	5821149	5821247	-	asmbl_6679	none	STRG.13648.1,blat.proc3825154.chain_2216	2	blat.proc3825154.chain_2217	1
scaffold_23	retained_exon	2634795	2634920	+	asmbl_31410,asmbl_31413,asmbl_31414	none	STRG.25731.1,STRG.25731.2,STRG.25731.4	3	STRG.25731.3	1
scaffold_5	alt_donor	17001569	17001570	+	asmbl_46124	none	STRG.6880.2,blat.proc3825166.chain_3042	2	STRG.6880.1,blat.proc3825166.chain_3043	2
scaffold_11	retained_intron	11640396	11641269	+	asmbl_5983,asmbl_5984,asmbl_5986,asmbl_5987,asmbl_5988	none	blat.proc3825170.chain_2634,blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2640	5	STRG.14090.1,blat.proc3825170.chain_2633,blat.proc3825170.chain_2639	3
scaffold_2	retained_intron	2995343	2995363	-	asmbl_22950,asmbl_22952	none	STRG.1746.1,STRG.1746.2	2	STRG.1746.3,STRG.1746.4	2
scaffold_28	alt_donor	3541010	3541011	-	asmbl_38156,asmbl_38158	none	STRG.29570.1,STRG.29570.3,blat.proc3825162.chain_2720	3	STRG.29570.2,blat.proc3825162.chain_2721	2
scaffold_27	ends_in_intron	3990445	3990445	+	asmbl_36251	none	blat.proc3825178.chain_2034	1	STRG.28871.1,blat.proc3825178.chain_2033,blat.proc3825178.chain_2035,blat.proc3825178.chain_2038	4
scaffold_12	alternate_exon	7223212	7223582	+	asmbl_7727	none	STRG.14792.2,blat.proc3825170.chain_3256	2	blat.proc3825170.chain_3255	1
scaffold_10	retained_intron	6065331	6066224	+	asmbl_3225,asmbl_3227,asmbl_3229,asmbl_3230	none	STRG.12435.1,STRG.12435.2,STRG.12435.4,STRG.12435.5,blat.proc3825170.chain_1069,blat.proc3825170.chain_1070,blat.proc3825170.chain_1071	7	STRG.12435.3,blat.proc3825170.chain_1067,blat.proc3825170.chain_1068	3
scaffold_6	alt_donor	2480018	2480019	-	asmbl_48127,asmbl_48128	none	STRG.7245.1,STRG.7245.4,blat.proc3825150.chain_3360,blat.proc3825150.chain_3361	4	STRG.7245.3	1
scaffold_23	ends_in_intron	6332566	6332566	+	asmbl_31615	none	blat.proc3825176.chain_2911	1	blat.proc3825176.chain_2912	1
scaffold_21	spliced_intron	9866643	9866822	-	asmbl_27977	none	STRG.24445.3	1	STRG.24445.1	1
scaffold_5	alt_donor	15043267	15043268	-	asmbl_44638	none	STRG.6698.3,blat.proc3825150.chain_2828	2	STRG.6698.2,STRG.6698.6,blat.proc3825150.chain_2829,blat.proc3825150.chain_2831	4
scaffold_22	retained_intron	6128541	6128687	+	asmbl_30098,asmbl_30099,asmbl_30101	none	STRG.24968.6,Trinity_GG_31147_c1_g2_i1,blat.proc3825176.chain_2133	3	STRG.24968.7	1
scaffold_1	alt_donor	9196526	9196527	+	asmbl_1959	none	STRG.610.2,Trinity_GG_17701_c0_g1_i2,blat.proc3825164.chain_757	3	STRG.610.1,STRG.610.3,Trinity_GG_17701_c0_g1_i1,blat.proc3825164.chain_756	4
scaffold_23	alt_donor	4450583	4450584	-	asmbl_30866,asmbl_30867,asmbl_30870	none	STRG.25862.1,STRG.25862.3,STRG.25862.5,Trinity_GG_14447_c0_g1_i1,Trinity_GG_14447_c0_g1_i2,blat.proc3825160.chain_3002,blat.proc3825160.chain_3005	7	STRG.25862.4,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3004	3
scaffold_18	alt_donor	5584877	5584878	-	asmbl_19864	none	STRG.21314.2	1	STRG.21314.1,blat.proc3825158.chain_2270	2
scaffold_1	alternate_exon	19041067	19043376	+	asmbl_2581	none	STRG.1335.5	1	STRG.1335.7	1
scaffold_23	starts_in_intron	6990550	6990550	-	asmbl_30997,asmbl_30998	none	STRG.26022.1,STRG.26022.3,blat.proc3825160.chain_3166	3	STRG.26022.2,blat.proc3825160.chain_3167	2
scaffold_2	retained_exon	3348276	3348362	-	asmbl_22974	none	STRG.1776.1	1	STRG.1776.2	1
scaffold_3	starts_in_intron	17117533	17117533	+	asmbl_40646	none	blat.proc3825166.chain_420	1	STRG.3952.1,STRG.3952.2,STRG.3952.3,blat.proc3825166.chain_421	4
scaffold_2	retained_intron	888427	888576	+	asmbl_24127,asmbl_24129,asmbl_24130,asmbl_24131	none	Trinity_GG_18210_c1_g1_i8,blat.proc3825164.chain_1712,blat.proc3825164.chain_1714,blat.proc3825164.chain_1715,blat.proc3825164.chain_1716	5	STRG.1565.2,STRG.1565.3,STRG.1565.4	3
scaffold_14	alt_acceptor	1070948	1070949	+	asmbl_11788,asmbl_11790,asmbl_11791,asmbl_11792,asmbl_11797	none	STRG.16766.1,STRG.16766.2,STRG.16766.5,Trinity_GG_26535_c0_g1_i7,blat.proc3825172.chain_1534,blat.proc3825172.chain_1536,blat.proc3825172.chain_1539	7	STRG.16766.4	1
scaffold_13	ends_in_intron	12105179	12105179	+	asmbl_11333	none	Trinity_GG_26304_c0_g1_i2,blat.proc3825172.chain_1150	2	STRG.16347.1,Trinity_GG_26304_c0_g1_i1,blat.proc3825172.chain_1152	3
scaffold_4	alt_acceptor	3861736	3861737	+	asmbl_41205	none	STRG.4294.2	1	STRG.4294.1,blat.proc3825166.chain_753	2
scaffold_6	skipped_exon	17885654	17886862	+	asmbl_47798	none	STRG.8482.1,Trinity_GG_21935_c0_g1_i4,blat.proc3825168.chain_875	3	STRG.8482.2,STRG.8482.3,Trinity_GG_21935_c0_g1_i2,Trinity_GG_21935_c0_g1_i3,Trinity_GG_21935_c0_g1_i6,blat.proc3825168.chain_874,blat.proc3825168.chain_876,blat.proc3825168.chain_877	8
scaffold_20	alternate_exon	10382832	10384346	+	asmbl_26955	none	Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_671	2	blat.proc3825176.chain_668	1
scaffold_10	starts_in_intron	13530290	13530290	+	asmbl_3613	none	STRG.12952.2,Trinity_GG_24454_c0_g1_i1,blat.proc3825170.chain_1580	3	STRG.12952.1,blat.proc3825170.chain_1579	2
scaffold_7	starts_in_intron	18762283	18762283	-	asmbl_51500	none	STRG.9686.1,blat.proc3825152.chain_1973	2	STRG.9686.2	1
scaffold_21	retained_intron	2516716	2516804	+	asmbl_28399	none	Trinity_GG_30506_c0_g1_i3,blat.proc3825176.chain_1027	2	STRG.23880.1,blat.proc3825176.chain_1028	2
scaffold_26	starts_in_intron	9947646	9947646	-	asmbl_35803	none	STRG.28526.1	1	STRG.28526.2,STRG.28526.3	2
scaffold_5	retained_exon	10890168	10890244	-	asmbl_44384,asmbl_44385	none	STRG.6367.1,blat.proc3825150.chain_2460,blat.proc3825150.chain_2461	3	STRG.6367.2,blat.proc3825150.chain_2462,blat.proc3825150.chain_2463	3
scaffold_22	alt_donor	6502495	6502496	-	asmbl_29334	none	STRG.24986.2	1	STRG.24986.1,blat.proc3825160.chain_2165	2
scaffold_11	alt_donor	11637423	11637424	+	asmbl_5987	none	blat.proc3825170.chain_2637	1	blat.proc3825170.chain_2635,blat.proc3825170.chain_2640	2
scaffold_16	alt_donor	3978194	3978195	-	asmbl_17024	none	STRG.19215.2	1	STRG.19215.1,STRG.19215.3,blat.proc3825158.chain_345	3
scaffold_10	retained_intron	13787525	13787965	+	asmbl_3624	none	STRG.12979.2	1	STRG.12979.1	1
scaffold_4	starts_in_intron	12790084	12790084	+	asmbl_41755	none	blat.proc3825166.chain_1367	1	STRG.4935.1,STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365,blat.proc3825166.chain_1369	5
scaffold_17	starts_in_intron	4267663	4267663	+	asmbl_18779	none	Trinity_GG_28385_c0_g2_i1,blat.proc3825174.chain_1079	2	STRG.20175.1,blat.proc3825174.chain_1078	2
scaffold_13	retained_intron	8237956	8238073	-	asmbl_9961	none	blat.proc3825156.chain_1037	1	STRG.16116.1,blat.proc3825156.chain_1035,blat.proc3825156.chain_1038	3
scaffold_27	alt_acceptor	1044478	1044479	+	asmbl_35984	none	STRG.28605.1	1	STRG.28605.2	1
scaffold_11	alt_acceptor	10978106	10978107	-	asmbl_7004	none	STRG.14063.1,blat.proc3825154.chain_2624	2	STRG.14063.2,blat.proc3825154.chain_2622	2
scaffold_4	retained_intron	16480998	16481101	-	asmbl_43178	none	STRG.5225.2,blat.proc3825150.chain_1406	2	blat.proc3825150.chain_1405	1
scaffold_11	starts_in_intron	1016373	1016373	-	asmbl_6404	none	blat.proc3825154.chain_1857	1	STRG.13302.1,STRG.13302.2,blat.proc3825154.chain_1856	3
scaffold_6	spliced_intron	1749516	1750052	-	asmbl_48115,asmbl_48116,asmbl_48120	none	STRG.7232.2,STRG.7232.4,STRG.7232.5,blat.proc3825150.chain_3312,blat.proc3825150.chain_3313	5	STRG.7232.1,STRG.7232.3,Trinity_GG_4021_c0_g1_i7,blat.proc3825150.chain_3309,blat.proc3825150.chain_3310,blat.proc3825150.chain_3311,blat.proc3825150.chain_3315	7
scaffold_32	starts_in_intron	9953	9953	-	asmbl_40952	none	blat.proc3825162.chain_3184	1	STRG.30018.1	1
scaffold_19	retained_intron	7669634	7671322	-	asmbl_22250	none	STRG.22247.2,blat.proc3825158.chain_3063	2	STRG.22247.1	1
scaffold_28	retained_intron	5611858	5612155	-	asmbl_38298	none	STRG.29697.4,Trinity_GG_16664_c0_g1_i6,blat.proc3825162.chain_2898	3	STRG.29697.5,Trinity_GG_16664_c0_g1_i1,blat.proc3825162.chain_2900	3
scaffold_27	spliced_intron	1026348	1026649	-	asmbl_36739,asmbl_36740,asmbl_36742	none	STRG.28610.1,STRG.28610.2,STRG.28610.3,blat.proc3825162.chain_1755,blat.proc3825162.chain_1756	5	blat.proc3825162.chain_1754	1
scaffold_26	skipped_exon	4141762	4142373	+	asmbl_34871	none	STRG.28122.1	1	STRG.28122.2	1
scaffold_19	retained_exon	12237937	12237981	+	asmbl_21767	none	STRG.22556.1,blat.proc3825174.chain_3501	2	blat.proc3825174.chain_3499	1
scaffold_25	ends_in_intron	800500	800500	-	asmbl_34005	none	blat.proc3825162.chain_509	1	STRG.27136.1,STRG.27136.3,blat.proc3825162.chain_511	3
scaffold_17	alternate_exon	2354832	2355134	+	asmbl_18644	none	STRG.20030.3	1	STRG.20030.5,STRG.20030.7	2
scaffold_26	ends_in_intron	7905547	7905547	-	asmbl_35723	none	STRG.28415.2	1	STRG.28415.1	1
scaffold_14	alt_acceptor	11573661	11573662	-	asmbl_13498	none	STRG.17499.3,Trinity_GG_9808_c0_g1_i5	2	blat.proc3825156.chain_2302	1
scaffold_18	retained_intron	1896938	1897477	-	asmbl_19656,asmbl_19658,asmbl_19661,asmbl_19662,asmbl_19665	none	STRG.21081.3,blat.proc3825158.chain_2010,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2018	5	STRG.21081.10,STRG.21081.8,STRG.21081.9,blat.proc3825158.chain_2011,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017	7
scaffold_2	ends_in_intron	6906418	6906418	+	asmbl_24516	none	blat.proc3825164.chain_2155	1	STRG.2036.2,Trinity_GG_18453_c0_g1_i2,blat.proc3825164.chain_2157	3
scaffold_19	alt_acceptor	8805840	8805841	+	asmbl_21555	none	STRG.22329.1,blat.proc3825174.chain_3335	2	STRG.22329.2,STRG.22329.4	2
scaffold_28	spliced_intron	7305588	7306228	-	asmbl_38391	none	STRG.29803.2,Trinity_GG_16722_c0_g1_i1,blat.proc3825162.chain_2987	3	STRG.29803.1	1
scaffold_8	ends_in_intron	13137536	13137536	-	asmbl_52270	none	Trinity_GG_5839_c3_g1_i1,blat.proc3825152.chain_2754	2	STRG.10488.1,STRG.10488.2,blat.proc3825152.chain_2748,blat.proc3825152.chain_2749,blat.proc3825152.chain_2750,blat.proc3825152.chain_2751	6
scaffold_10	alt_donor	4159532	4159533	-	asmbl_4270	none	blat.proc3825154.chain_810	1	STRG.12253.1,blat.proc3825154.chain_809	2
scaffold_17	starts_in_intron	6593559	6593559	+	asmbl_18858	none	blat.proc3825174.chain_1096	1	STRG.20311.1	1
scaffold_3	spliced_intron	4282597	4282658	+	asmbl_39994	none	STRG.3123.2	1	STRG.3123.1	1
scaffold_13	alternate_exon	11382290	11382356	-	asmbl_10086,asmbl_10087,asmbl_10088,asmbl_10090	none	STRG.16301.3,STRG.16301.4,blat.proc3825156.chain_1169,blat.proc3825156.chain_1170,blat.proc3825156.chain_1173	5	STRG.16301.5	1
scaffold_4	ends_in_intron	19379313	19379313	+	asmbl_42139	none	blat.proc3825166.chain_1815	1	Trinity_GG_20347_c0_g1_i4,blat.proc3825166.chain_1813	2
scaffold_14	ends_in_intron	14322744	14322744	+	asmbl_12536	none	blat.proc3825172.chain_2305	1	STRG.17692.1,blat.proc3825172.chain_2306	2
scaffold_23	retained_intron	4899125	4899400	+	asmbl_31536	none	STRG.25884.3	1	STRG.25884.1,STRG.25884.4,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817	6
scaffold_16	alt_acceptor	125549	125550	+	asmbl_15996	none	STRG.19007.1,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3683	3	STRG.19007.4	1
scaffold_2	alt_acceptor	20327891	20327892	-	asmbl_23896	none	STRG.2879.2	1	STRG.2879.1,blat.proc3825148.chain_2762	2
scaffold_5	skipped_exon	3591643	3592652	-	asmbl_43923,asmbl_43925	none	STRG.5831.2,STRG.5831.4,blat.proc3825150.chain_2046	3	STRG.5831.5	1
scaffold_8	spliced_intron	18421281	18421426	+	asmbl_53544,asmbl_53545	none	STRG.10741.1,STRG.10741.2,blat.proc3825168.chain_3256,blat.proc3825168.chain_3258	4	blat.proc3825168.chain_3257	1
scaffold_3	retained_intron	4304531	4304555	-	asmbl_38799	none	STRG.3131.1	1	STRG.3131.2	1
scaffold_11	spliced_intron	6251734	6253377	+	asmbl_5621	none	STRG.13692.1,blat.proc3825170.chain_2239	2	STRG.13692.3,Trinity_GG_24860_c0_g1_i1,Trinity_GG_24860_c1_g1_i1,blat.proc3825170.chain_2240	4
scaffold_464	spliced_intron	3524	3609	+	asmbl_43726	none	STRG.30345.1,blat.proc3825178.chain_3423	2	STRG.30345.3,blat.proc3825178.chain_3424	2
scaffold_3	retained_intron	6658616	6658787	+	asmbl_40103,asmbl_40105,asmbl_40106,asmbl_40107,asmbl_40111,asmbl_40112,asmbl_40113,asmbl_40114,asmbl_40116	none	STRG.3295.1,STRG.3295.3,STRG.3295.4,blat.proc3825164.chain_3558,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3564,blat.proc3825164.chain_3565,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	11	STRG.3295.2,blat.proc3825164.chain_3559,blat.proc3825164.chain_3563,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567	5
scaffold_24	alt_donor	5371759	5371760	-	asmbl_32904	none	blat.proc3825162.chain_11	1	STRG.26626.1,blat.proc3825162.chain_10	2
scaffold_2	starts_in_intron	15502025	15502025	+	asmbl_25061	none	blat.proc3825164.chain_2797	1	STRG.2511.1,blat.proc3825164.chain_2799	2
scaffold_10	alt_acceptor	1710326	1710327	-	asmbl_4077	none	STRG.12030.2	1	STRG.12030.1,Trinity_GG_6687_c0_g1_i1	2
scaffold_14	starts_in_intron	4154288	4154288	+	asmbl_11982,asmbl_11983	none	Trinity_GG_26617_c0_g1_i1,Trinity_GG_26617_c0_g1_i3	2	STRG.16971.1,STRG.16971.2,STRG.16971.3,Trinity_GG_26617_c0_g1_i2	4
scaffold_3	alt_acceptor	6656792	6656793	+	asmbl_40112,asmbl_40113	none	STRG.3295.3,blat.proc3825164.chain_3564	2	STRG.3295.1,STRG.3295.2,STRG.3295.4,Trinity_GG_19180_c0_g1_i15,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3562,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	16
scaffold_6	spliced_intron	17798851	17799282	-	asmbl_49198	none	STRG.8463.1,blat.proc3825152.chain_850	2	blat.proc3825152.chain_849	1
scaffold_16	spliced_intron	8101538	8101645	-	asmbl_17232	none	STRG.19455.1,blat.proc3825158.chain_604	2	blat.proc3825158.chain_606	1
scaffold_13	ends_in_intron	364719	364719	-	asmbl_9309	none	Trinity_GG_8663_c0_g1_i2,blat.proc3825156.chain_293	2	STRG.15442.2,Trinity_GG_8663_c0_g1_i17,blat.proc3825156.chain_296	3
scaffold_13	skipped_exon	11585754	11588600	+	asmbl_11286	none	STRG.16316.5	1	STRG.16316.3,STRG.16316.4,blat.proc3825172.chain_1028,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030,blat.proc3825172.chain_1036	6
scaffold_27	starts_in_intron	5793919	5793919	-	asmbl_37027	none	blat.proc3825162.chain_2212	1	STRG.28982.1,STRG.28982.2,blat.proc3825162.chain_2213,blat.proc3825162.chain_2214	4
scaffold_1	alt_acceptor	18042592	18042593	-	asmbl_1085	none	STRG.1270.2	1	STRG.1270.1,blat.proc3825148.chain_1265,blat.proc3825148.chain_1266	3
scaffold_3	starts_in_intron	17115715	17115715	+	asmbl_40644	none	Trinity_GG_19517_c3_g1_i1,blat.proc3825166.chain_428	2	STRG.3952.1,STRG.3952.2	2
scaffold_5	alt_donor	4865673	4865674	+	asmbl_45310	none	STRG.5946.2,blat.proc3825166.chain_2172	2	STRG.5946.1,Trinity_GG_20566_c0_g1_i4,blat.proc3825166.chain_2170	3
scaffold_1	alt_acceptor	21931438	21931439	-	asmbl_1228	none	STRG.1473.1	1	STRG.1473.2	1
scaffold_22	alternate_exon	11477658	11477808	+	asmbl_30395	none	STRG.25495.3,Trinity_GG_31379_c0_g1_i4,blat.proc3825176.chain_2476	3	STRG.25495.1,STRG.25495.2,Trinity_GG_31379_c0_g1_i1,Trinity_GG_31379_c0_g1_i2,Trinity_GG_31379_c0_g1_i3,blat.proc3825176.chain_2477,blat.proc3825176.chain_2478,blat.proc3825176.chain_2479	8
scaffold_12	alt_donor	14045228	14045229	-	asmbl_8962,asmbl_8964	none	STRG.15234.2,blat.proc3825156.chain_39	2	STRG.15234.1,blat.proc3825156.chain_37	2
scaffold_10	alt_acceptor	1173801	1173802	+	asmbl_2917	none	STRG.12009.4	1	STRG.12009.1,STRG.12009.2,STRG.12009.3,blat.proc3825170.chain_767,blat.proc3825170.chain_768,blat.proc3825170.chain_769,blat.proc3825170.chain_770	7
scaffold_4	spliced_intron	4371150	4371554	+	asmbl_41240,asmbl_41242	none	STRG.4338.1,blat.proc3825166.chain_788,blat.proc3825166.chain_789	3	blat.proc3825166.chain_790	1
scaffold_11	alt_donor	7050614	7050615	+	asmbl_5647,asmbl_5648,asmbl_5650,asmbl_5651	none	STRG.13733.1,STRG.13733.2,STRG.13733.5,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2273	7	STRG.13733.3,STRG.13733.4,Trinity_GG_24878_c0_g1_i4,blat.proc3825170.chain_2269	4
scaffold_16	starts_in_intron	12018896	12018896	+	asmbl_16628	none	Trinity_GG_28082_c0_g1_i1,blat.proc3825174.chain_575	2	STRG.19728.1,STRG.19728.3,Trinity_GG_28082_c0_g1_i3,blat.proc3825174.chain_576,blat.proc3825174.chain_577	5
scaffold_21	alternate_exon	5143825	5144043	-	asmbl_27614	none	blat.proc3825160.chain_1236	1	blat.proc3825160.chain_1234	1
scaffold_12	retained_intron	16338959	16339103	+	asmbl_8163	none	blat.proc3825172.chain_103	1	STRG.15393.1,blat.proc3825172.chain_105	2
scaffold_17	spliced_intron	9533790	9533896	+	asmbl_19102,asmbl_19103,asmbl_19104,asmbl_19105,asmbl_19109	none	STRG.20578.1,STRG.20578.2,STRG.20578.3,STRG.20578.4,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1402	8	Trinity_GG_28562_c0_g1_i3,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	3
scaffold_8	spliced_intron	11760968	11761438	-	asmbl_52165	none	STRG.10380.2	1	STRG.10380.1,blat.proc3825152.chain_2603	2
scaffold_3	spliced_intron	12773155	12773414	+	asmbl_40416	none	STRG.3668.2,Trinity_GG_19374_c0_g1_i3,blat.proc3825166.chain_175	3	STRG.3668.1,Trinity_GG_19374_c0_g1_i2,blat.proc3825166.chain_174	3
scaffold_11	ends_in_intron	1162738	1162738	+	asmbl_5327,asmbl_5329,asmbl_5330	none	STRG.13315.1,STRG.13315.3,blat.proc3825170.chain_1783,blat.proc3825170.chain_1784	4	STRG.13315.2,blat.proc3825170.chain_1782	2
scaffold_4	retained_intron	18288544	18288639	+	asmbl_42091	none	STRG.5425.1	1	STRG.5425.2	1
scaffold_27	retained_intron	6258393	6258607	+	asmbl_36393	none	STRG.29016.1,blat.proc3825178.chain_2190	2	blat.proc3825178.chain_2193	1
scaffold_16	alternate_exon	12017770	12017952	+	asmbl_16626	none	STRG.19728.1	1	Trinity_GG_28082_c0_g1_i3,blat.proc3825174.chain_576	2
scaffold_12	spliced_intron	9861352	9861459	+	asmbl_7886	none	STRG.14958.1,blat.proc3825170.chain_3457	2	blat.proc3825170.chain_3458	1
scaffold_27	spliced_intron	2998993	2999967	+	asmbl_36150,asmbl_36151,asmbl_36154,asmbl_36155,asmbl_36156,asmbl_36158	none	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	8	blat.proc3825178.chain_1902,blat.proc3825178.chain_1904	2
scaffold_2	retained_intron	4687220	4687254	-	asmbl_23085,asmbl_23087	none	STRG.1889.1,Trinity_GG_1043_c0_g1_i1,blat.proc3825148.chain_1850	3	STRG.1889.2,STRG.1889.3	2
scaffold_14	alt_acceptor	8707819	8707820	+	asmbl_12266	none	STRG.17309.1	1	STRG.17309.2,blat.proc3825172.chain_2087	2
scaffold_17	retained_exon	8613560	8613604	+	asmbl_19003,asmbl_19004,asmbl_19005	none	STRG.20473.3,STRG.20473.4,STRG.20473.5,blat.proc3825174.chain_1334,blat.proc3825174.chain_1335,blat.proc3825174.chain_1337,blat.proc3825174.chain_1338,blat.proc3825174.chain_1339	8	STRG.20473.1,blat.proc3825174.chain_1336	2
scaffold_24	alt_acceptor	8126951	8126952	+	asmbl_32415	none	blat.proc3825178.chain_54	1	blat.proc3825178.chain_55	1
scaffold_2	ends_in_intron	9190185	9190185	-	asmbl_23366	none	blat.proc3825148.chain_2202	1	STRG.2171.1,blat.proc3825148.chain_2197,blat.proc3825148.chain_2199,blat.proc3825148.chain_2200	4
scaffold_28	ends_in_intron	58461	58461	-	asmbl_37884	none	Trinity_GG_16368_c0_g1_i4,blat.proc3825162.chain_2398	2	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2400,blat.proc3825162.chain_2401,blat.proc3825162.chain_2402	5
scaffold_24	ends_in_intron	6226839	6226839	-	asmbl_32943	none	Trinity_GG_14882_c2_g1_i1,blat.proc3825160.chain_3739	2	STRG.26685.1,STRG.26685.2,STRG.26685.3,STRG.26685.4,STRG.26685.5,STRG.26685.7,STRG.26685.8,Trinity_GG_14882_c0_g1_i8,blat.proc3825160.chain_3732,blat.proc3825160.chain_3733,blat.proc3825160.chain_3734,blat.proc3825160.chain_3735,blat.proc3825160.chain_3737	13
scaffold_14	spliced_intron	3160506	3161274	+	asmbl_11917	none	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605	2
scaffold_18	spliced_intron	6423799	6424289	+	asmbl_20675	none	STRG.21370.1,blat.proc3825158.chain_2297,blat.proc3825174.chain_2386	3	STRG.21370.2,Trinity_GG_29106_c1_g1_i1,blat.proc3825174.chain_2384,blat.proc3825174.chain_2387	4
scaffold_1	spliced_intron	20347140	20348362	+	asmbl_2619	none	STRG.1396.1	1	STRG.1396.2,STRG.1396.3,Trinity_GG_18153_c0_g1_i4,blat.proc3825164.chain_1584,blat.proc3825164.chain_1586	5
scaffold_27	ends_in_intron	5787148	5787148	-	asmbl_37021	none	blat.proc3825162.chain_2192	1	STRG.28981.1,blat.proc3825162.chain_2191	2
scaffold_2	alt_acceptor	13077482	13077483	-	asmbl_23492,asmbl_23494,asmbl_23495	none	STRG.2337.1,blat.proc3825148.chain_2340,blat.proc3825148.chain_2345	3	STRG.2337.2,STRG.2337.3,STRG.2337.4,STRG.2337.5,blat.proc3825148.chain_2341,blat.proc3825148.chain_2342,blat.proc3825148.chain_2343	7
scaffold_13	starts_in_intron	4017936	4017936	+	asmbl_10752	none	Trinity_GG_25950_c0_g1_i2,blat.proc3825172.chain_463	2	blat.proc3825172.chain_461,blat.proc3825172.chain_462	2
scaffold_24	spliced_intron	5945203	5947592	+	asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32262,asmbl_32264,asmbl_32268,asmbl_32269,asmbl_32273,asmbl_32274,asmbl_32275,asmbl_32276	none	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	13	blat.proc3825176.chain_3665,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671	3
scaffold_23	alt_acceptor	1136489	1136490	-	asmbl_30629,asmbl_30632	none	STRG.25596.2,blat.proc3825160.chain_2731	2	STRG.25596.1,blat.proc3825160.chain_2732,blat.proc3825160.chain_2733,blat.proc3825160.chain_2734	4
scaffold_10	skipped_exon	7502183	7505111	+	asmbl_3279	none	blat.proc3825170.chain_1180	1	STRG.12545.1,blat.proc3825170.chain_1179	2
scaffold_7	alt_donor	5917154	5917155	-	asmbl_50901	none	STRG.8897.1,blat.proc3825152.chain_1287	2	blat.proc3825152.chain_1286	1
scaffold_4	retained_exon	7151071	7151103	+	asmbl_41467	none	STRG.4559.3	1	STRG.4559.2,STRG.4559.5,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	4
scaffold_11	alt_acceptor	8485383	8485384	+	asmbl_5791	none	STRG.13868.2,Trinity_GG_24959_c0_g1_i1,Trinity_GG_24959_c0_g1_i2,blat.proc3825170.chain_2426	4	STRG.13868.1	1
scaffold_3	retained_exon	8533143	8533271	+	asmbl_40217	none	STRG.3424.1	1	STRG.3424.2	1
scaffold_18	starts_in_intron	8726003	8726003	+	asmbl_20860	none	Trinity_GG_29235_c0_g1_i3,blat.proc3825174.chain_2621	2	STRG.21537.1,STRG.21537.3,blat.proc3825174.chain_2616,blat.proc3825174.chain_2618,blat.proc3825174.chain_2619,blat.proc3825174.chain_2620	6
scaffold_8	spliced_intron	12625487	12625600	-	asmbl_52212,asmbl_52214	none	STRG.10437.1,blat.proc3825152.chain_2673,blat.proc3825152.chain_2675	3	blat.proc3825152.chain_2674,blat.proc3825152.chain_2676	2
scaffold_13	starts_in_intron	6295308	6295308	+	asmbl_10919	none	STRG.15925.3,blat.proc3825172.chain_662	2	STRG.15925.1,STRG.15925.2,blat.proc3825172.chain_658,blat.proc3825172.chain_659,blat.proc3825172.chain_660,blat.proc3825172.chain_661	6
scaffold_1	alternate_exon	13882717	13883296	-	asmbl_856	none	STRG.996.4	1	blat.proc3825148.chain_1007	1
scaffold_17	starts_in_intron	13960377	13960377	+	asmbl_19370	none	Trinity_GG_28778_c0_g1_i2,blat.proc3825174.chain_1772	2	STRG.20882.1,STRG.20882.2,blat.proc3825174.chain_1771,blat.proc3825174.chain_1773,blat.proc3825174.chain_1774,blat.proc3825174.chain_1775	6
scaffold_22	spliced_intron	7416523	7416632	-	asmbl_29396	none	STRG.25079.2	1	STRG.25079.1,blat.proc3825160.chain_2234,blat.proc3825160.chain_2236	3
scaffold_4	ends_in_intron	177178	177178	-	asmbl_42312	none	Trinity_GG_2287_c0_g2_i1,blat.proc3825150.chain_333	2	STRG.4116.1,Trinity_GG_2287_c0_g1_i1,blat.proc3825150.chain_331	3
scaffold_26	retained_intron	9781574	9781736	+	asmbl_35269	none	Trinity_GG_33037_c0_g1_i1,blat.proc3825178.chain_1532	2	STRG.28520.1,Trinity_GG_33037_c0_g1_i2,blat.proc3825178.chain_1533	3
scaffold_13	alt_donor	12244092	12244093	+	asmbl_11344,asmbl_11345	none	STRG.16354.1,STRG.16354.3	2	STRG.16354.2	1
scaffold_8	spliced_intron	7482090	7482283	-	asmbl_51911,asmbl_51914,asmbl_51915	none	STRG.10078.1,blat.proc3825152.chain_2256,blat.proc3825152.chain_2257,blat.proc3825152.chain_2259	4	Trinity_GG_5574_c0_g2_i1,blat.proc3825152.chain_2260	2
scaffold_10	starts_in_intron	13471773	13471773	-	asmbl_4889	none	blat.proc3825154.chain_1534	1	STRG.12943.2,STRG.12943.3,blat.proc3825154.chain_1532,blat.proc3825154.chain_1533	4
scaffold_24	starts_in_intron	10596884	10596884	-	asmbl_33212	none	blat.proc3825162.chain_360	1	STRG.27020.1,blat.proc3825162.chain_362,blat.proc3825162.chain_363	3
scaffold_4	spliced_intron	19354511	19354584	-	asmbl_43433,asmbl_43435,asmbl_43436,asmbl_43438,asmbl_43440	none	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	6	Trinity_GG_3086_c0_g1_i9,blat.proc3825150.chain_1681	2
scaffold_15	spliced_intron	4497290	4497450	+	asmbl_15149	none	STRG.18181.1,blat.proc3825172.chain_2831	2	blat.proc3825172.chain_2830	1
scaffold_17	spliced_intron	12187281	12187379	+	asmbl_19275	none	STRG.20753.3,blat.proc3825174.chain_1620	2	STRG.20753.2,blat.proc3825174.chain_1619	2
scaffold_11	starts_in_intron	10820150	10820150	+	asmbl_5949	none	Trinity_GG_25057_c0_g1_i3,blat.proc3825170.chain_2594	2	STRG.14055.1,blat.proc3825170.chain_2595,blat.proc3825170.chain_2596	3
scaffold_10	retained_intron	17090940	17090995	-	asmbl_5030	none	STRG.13160.1	1	STRG.13160.2	1
scaffold_6	retained_intron	8171724	8171933	-	asmbl_48545	none	blat.proc3825152.chain_86	1	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_87,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93	6
scaffold_2	spliced_intron	5183182	5183574	-	asmbl_23133	none	blat.proc3825148.chain_1967	1	STRG.1929.1,blat.proc3825148.chain_1965	2
scaffold_17	ends_in_intron	13083819	13083819	+	asmbl_19310	none	blat.proc3825174.chain_1723	1	STRG.20804.1,blat.proc3825174.chain_1718,blat.proc3825174.chain_1721,blat.proc3825174.chain_1722,blat.proc3825174.chain_1725,blat.proc3825174.chain_1726,blat.proc3825174.chain_1727	7
scaffold_13	alternate_exon	8799103	8805239	-	asmbl_9982	none	STRG.16153.4	1	blat.proc3825156.chain_1066	1
scaffold_14	skipped_exon	11676499	11677256	-	asmbl_13518	none	STRG.17513.1,blat.proc3825156.chain_2349	2	STRG.17513.2,blat.proc3825156.chain_2347	2
scaffold_15	alt_acceptor	7895059	7895060	+	asmbl_15308	none	STRG.18365.1	1	STRG.18365.2	1
scaffold_4	alternate_exon	19579209	19579606	-	asmbl_43453,asmbl_43454,asmbl_43455,asmbl_43456	none	STRG.5543.1,STRG.5543.2,blat.proc3825150.chain_1740,blat.proc3825150.chain_1741,blat.proc3825150.chain_1742,blat.proc3825150.chain_1743	6	STRG.5543.4	1
scaffold_2	retained_intron	16288201	16288309	+	asmbl_25113	none	blat.proc3825164.chain_2850	1	blat.proc3825164.chain_2853	1
scaffold_2	alt_acceptor	20310005	20310006	+	asmbl_25319	none	STRG.2876.1,blat.proc3825164.chain_3119	2	STRG.2876.3	1
scaffold_15	starts_in_intron	7434999	7434999	-	asmbl_14300	none	blat.proc3825156.chain_3189	1	STRG.18342.1,blat.proc3825156.chain_3187	2
scaffold_3	retained_intron	17338585	17338883	-	asmbl_39542	none	Trinity_GG_2142_c0_g1_i3,blat.proc3825150.chain_72	2	STRG.3962.1,blat.proc3825150.chain_71	2
scaffold_23	starts_in_intron	9942154	9942154	+	asmbl_31813	none	blat.proc3825176.chain_3169	1	STRG.26193.2,STRG.26193.3,blat.proc3825176.chain_3168	3
scaffold_5	alt_acceptor	15044203	15044204	-	asmbl_44635	none	Trinity_GG_3732_c0_g1_i1,blat.proc3825150.chain_2826	2	STRG.6698.6,Trinity_GG_3732_c0_g1_i2,blat.proc3825150.chain_2825	3
scaffold_5	skipped_exon	15506286	15508000	-	asmbl_44680	none	STRG.6740.1,blat.proc3825150.chain_2930,blat.proc3825150.chain_2932	3	STRG.6740.2,blat.proc3825150.chain_2928,blat.proc3825150.chain_2929,blat.proc3825150.chain_2931	4
scaffold_6	alt_donor	168397	168398	-	asmbl_48026	none	STRG.7079.1	1	STRG.7079.2	1
scaffold_16	alternate_exon	9425415	9426221	+	asmbl_16481	none	STRG.19543.1,Trinity_GG_28010_c0_g1_i1,blat.proc3825174.chain_455	3	STRG.19543.2,blat.proc3825174.chain_456	2
scaffold_15	retained_exon	15450277	15450340	+	asmbl_15786,asmbl_15793,asmbl_15794,asmbl_15795	none	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i3,blat.proc3825172.chain_3619,blat.proc3825172.chain_3621,blat.proc3825172.chain_3624	7	Trinity_GG_27706_c0_g1_i6,blat.proc3825172.chain_3625	2
scaffold_22	starts_in_intron	6122473	6122473	-	asmbl_29308	none	blat.proc3825160.chain_2151	1	STRG.24967.2	1
scaffold_23	retained_exon	4101046	4101228	-	asmbl_30832	none	STRG.25826.1	1	STRG.25826.2,blat.proc3825160.chain_3031	2
scaffold_4	alternate_exon	16315601	16315867	+	asmbl_41962	none	STRG.5200.3,blat.proc3825166.chain_1502	2	STRG.5200.1	1
scaffold_8	retained_intron	18108298	18108429	+	asmbl_53531	none	STRG.10716.2,Trinity_GG_23260_c0_g1_i3,blat.proc3825168.chain_3249	3	STRG.10716.3	1
scaffold_18	starts_in_intron	1921223	1921223	-	asmbl_19668,asmbl_19672	none	STRG.21084.1,Trinity_GG_11825_c1_g1_i1,blat.proc3825158.chain_2065,blat.proc3825158.chain_2066	4	STRG.21084.2	1
scaffold_14	retained_intron	151364	151716	-	asmbl_12777,asmbl_12781,asmbl_12783	none	STRG.16711.4,STRG.16711.5,blat.proc3825156.chain_1519,blat.proc3825156.chain_1520	4	STRG.16711.6,blat.proc3825156.chain_1518	2
scaffold_15	spliced_intron	5453993	5454323	-	asmbl_14208,asmbl_14209,asmbl_14213	none	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3106	5	Trinity_GG_10273_c0_g1_i6,blat.proc3825156.chain_3105,blat.proc3825156.chain_3107	3
scaffold_8	spliced_intron	15345104	15345457	+	asmbl_53403	none	STRG.10562.1,Trinity_GG_23183_c0_g1_i2,blat.proc3825168.chain_3098	3	STRG.10562.2,Trinity_GG_23183_c0_g1_i1,blat.proc3825168.chain_3097	3
scaffold_15	spliced_intron	15857347	15857502	+	asmbl_15821,asmbl_15822,asmbl_15823,asmbl_15827,asmbl_15829	none	STRG.18973.2,STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3572,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575	10	Trinity_GG_27688_c0_g1_i10,blat.proc3825172.chain_3573,blat.proc3825172.chain_3578	3
scaffold_2	starts_in_intron	7815495	7815495	-	asmbl_23278	none	Trinity_GG_1148_c0_g1_i3,blat.proc3825148.chain_2087	2	STRG.2079.1,Trinity_GG_1148_c0_g1_i1,Trinity_GG_1148_c0_g1_i2,blat.proc3825148.chain_2086,blat.proc3825148.chain_2088	5
scaffold_18	ends_in_intron	11467731	11467731	-	asmbl_20136	none	blat.proc3825158.chain_2551	1	STRG.21678.1,blat.proc3825158.chain_2550	2
scaffold_4	retained_intron	12457553	12457685	+	asmbl_41726	none	blat.proc3825166.chain_1280	1	STRG.4880.1,blat.proc3825166.chain_1281	2
scaffold_12	skipped_exon	3008296	3009494	-	asmbl_8346	none	STRG.14541.2	1	STRG.14541.1,blat.proc3825154.chain_3019	2
scaffold_5	spliced_intron	188214	188267	+	asmbl_45089,asmbl_45090	none	STRG.5587.4,STRG.5587.5	2	STRG.5587.1,STRG.5587.2,STRG.5587.3	3
scaffold_21	alternate_exon	257556	257725	-	asmbl_27289	none	STRG.23725.4	1	STRG.23725.1,STRG.23725.3	2
scaffold_2	alt_donor	7408527	7408528	-	asmbl_23252,asmbl_23254,asmbl_23256,asmbl_23259	none	STRG.2065.1,STRG.2065.5,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1983,blat.proc3825148.chain_1984,blat.proc3825148.chain_1985	7	STRG.2065.3,STRG.2065.6,Trinity_GG_1101_c0_g1_i4,blat.proc3825148.chain_1982	4
scaffold_10	alt_acceptor	1710329	1710330	-	asmbl_4076,asmbl_4078	none	STRG.12030.1,Trinity_GG_6687_c0_g1_i1	2	STRG.12030.2	1
scaffold_20	alternate_exon	7267171	7267248	+	asmbl_26718	none	STRG.23297.3,blat.proc3825176.chain_475	2	STRG.23297.1,STRG.23297.2,blat.proc3825176.chain_477	3
scaffold_25	spliced_intron	5157955	5158050	-	asmbl_34251	none	blat.proc3825162.chain_806	1	blat.proc3825162.chain_805	1
scaffold_24	alternate_exon	8896647	8896856	-	asmbl_33118	none	STRG.26912.1	1	blat.proc3825162.chain_278	1
scaffold_24	retained_intron	5951108	5951617	+	asmbl_32261	none	blat.proc3825176.chain_3664	1	STRG.26675.1,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3675,blat.proc3825176.chain_3678,blat.proc3825176.chain_3680	6
scaffold_16	alternate_exon	1249845	1249937	-	asmbl_16942	none	STRG.19087.3	1	STRG.19087.1,STRG.19087.2,STRG.19087.4,blat.proc3825158.chain_222,blat.proc3825158.chain_224,blat.proc3825158.chain_225,blat.proc3825158.chain_226	7
scaffold_13	spliced_intron	738856	739027	+	asmbl_10514	none	STRG.15461.1,blat.proc3825172.chain_193	2	STRG.15461.2,blat.proc3825172.chain_191	2
scaffold_5	spliced_intron	14537738	14537847	+	asmbl_45941	none	STRG.6649.1,blat.proc3825166.chain_2796	2	STRG.6649.2,blat.proc3825166.chain_2797	2
scaffold_15	alt_donor	9600473	9600474	+	asmbl_15395	none	STRG.18475.1,blat.proc3825172.chain_3149	2	STRG.18475.2,blat.proc3825172.chain_3148	2
scaffold_2	retained_intron	8299359	8300642	+	asmbl_24625,asmbl_24629	none	STRG.2114.3,blat.proc3825164.chain_2306	2	STRG.2114.1,STRG.2114.2,blat.proc3825164.chain_2307,blat.proc3825164.chain_2310,blat.proc3825164.chain_2311	5
scaffold_28	retained_exon	7747361	7747553	-	asmbl_38410	none	STRG.29848.2	1	STRG.29848.1,blat.proc3825162.chain_3009	2
scaffold_6	alt_acceptor	17884061	17884062	-	asmbl_49210	none	STRG.8481.1,blat.proc3825152.chain_880	2	STRG.8481.3	1
scaffold_26	retained_intron	3432400	3432532	+	asmbl_34780	none	blat.proc3825178.chain_981	1	STRG.28024.1,blat.proc3825178.chain_980,blat.proc3825178.chain_982	3
scaffold_22	spliced_intron	1013399	1013787	-	asmbl_29141	none	STRG.24755.2,blat.proc3825160.chain_1946	2	Trinity_GG_13836_c0_g1_i3,blat.proc3825160.chain_1947	2
scaffold_8	skipped_exon	2850138	2851267	-	asmbl_51717	none	STRG.9813.1,blat.proc3825152.chain_2092	2	STRG.9813.2,blat.proc3825152.chain_2093	2
scaffold_10	alternate_exon	1706200	1706281	-	asmbl_4075	none	STRG.12033.1	1	STRG.12033.2	1
scaffold_13	alt_acceptor	5948286	5948287	-	asmbl_9756,asmbl_9757,asmbl_9759	none	STRG.15911.1,STRG.15911.3,blat.proc3825156.chain_755,blat.proc3825156.chain_756	4	STRG.15911.2,STRG.15911.4	2
scaffold_28	alternate_exon	5917320	5917411	+	asmbl_37609,asmbl_37610	none	STRG.29720.2,STRG.29720.3,Trinity_GG_33778_c0_g1_i1,Trinity_GG_33778_c0_g1_i3,blat.proc3825178.chain_2888,blat.proc3825178.chain_2889	6	STRG.29720.1	1
scaffold_13	retained_exon	15363483	15364038	+	asmbl_11496	none	Trinity_GG_26428_c0_g1_i1	1	STRG.16579.2,Trinity_GG_26428_c0_g1_i2	2
scaffold_8	alt_acceptor	12717488	12717489	+	asmbl_53340	none	STRG.10448.2,blat.proc3825168.chain_3037	2	STRG.10448.1,blat.proc3825168.chain_3038	2
scaffold_22	alt_donor	8620836	8620837	+	asmbl_30282	none	STRG.25214.1	1	Trinity_GG_31273_c0_g1_i1	1
scaffold_3	alt_acceptor	6248046	6248047	-	asmbl_38932,asmbl_38936	none	STRG.3271.5,blat.proc3825148.chain_3138,blat.proc3825148.chain_3141	3	STRG.3271.2,STRG.3271.6,blat.proc3825148.chain_3137,blat.proc3825148.chain_3139,blat.proc3825148.chain_3143	5
scaffold_11	alternate_exon	15834191	15835484	+	asmbl_6138	none	STRG.14321.3	1	STRG.14321.1,STRG.14321.2,blat.proc3825170.chain_2797,blat.proc3825170.chain_2798,blat.proc3825170.chain_2800	5
scaffold_12	retained_exon	7962714	7962843	+	asmbl_7797,asmbl_7798	none	STRG.14861.1,STRG.14861.2,blat.proc3825170.chain_3356,blat.proc3825170.chain_3358	4	STRG.14861.3,blat.proc3825170.chain_3359	2
scaffold_5	spliced_intron	16018359	16018649	-	asmbl_44740	none	STRG.6788.1,blat.proc3825150.chain_2866	2	STRG.6788.2,Trinity_GG_3751_c0_g1_i4,blat.proc3825150.chain_2868	3
scaffold_10	alt_donor	4128325	4128326	-	asmbl_4260,asmbl_4261	none	STRG.12250.2,STRG.12250.3,blat.proc3825154.chain_829	3	STRG.12250.1,blat.proc3825154.chain_830	2
scaffold_23	skipped_exon	8101894	8102804	+	asmbl_31758	none	STRG.26124.1	1	STRG.26124.2	1
scaffold_25	alternate_exon	9447635	9448171	+	asmbl_33820	none	STRG.27758.2	1	STRG.27758.1,blat.proc3825178.chain_801,blat.proc3825178.chain_804	3
scaffold_15	alt_donor	15130184	15130185	-	asmbl_14756	none	STRG.18901.1,Trinity_GG_10621_c0_g1_i1,blat.proc3825158.chain_23	3	Trinity_GG_10621_c0_g1_i2,blat.proc3825158.chain_24	2
scaffold_23	starts_in_intron	5849909	5849909	-	asmbl_30950	none	STRG.25956.2,blat.proc3825160.chain_3157	2	STRG.25956.1,Trinity_GG_14544_c0_g1_i1,blat.proc3825160.chain_3156	3
scaffold_566	retained_intron	3943	4175	+	asmbl_46582	none	blat.proc3825172.chain_736	1	STRG.30397.1	1
scaffold_6	alternate_exon	17644974	17645169	-	asmbl_49194	none	STRG.8458.1	1	STRG.8458.3,Trinity_GG_4817_c0_g1_i1,blat.proc3825152.chain_885	3
scaffold_26	alt_acceptor	1326526	1326527	-	asmbl_35400,asmbl_35403	none	STRG.27913.2,STRG.27913.4	2	STRG.27913.1,STRG.27913.3	2
scaffold_19	starts_in_intron	9456245	9456245	+	asmbl_21592	none	STRG.22377.3	1	STRG.22377.1,blat.proc3825174.chain_3388	2
scaffold_7	alt_donor	7186396	7186397	+	asmbl_49903	none	STRG.8975.3	1	STRG.8975.1,STRG.8975.2,blat.proc3825168.chain_1480,blat.proc3825168.chain_1482	4
scaffold_5	spliced_intron	4696342	4696551	+	asmbl_45286	none	blat.proc3825166.chain_2150	1	STRG.5925.1	1
scaffold_16	spliced_intron	6138194	6138347	-	asmbl_17143	none	STRG.19348.1,blat.proc3825158.chain_514	2	STRG.19348.2,blat.proc3825158.chain_515	2
scaffold_11	alt_acceptor	11937351	11937352	-	asmbl_7043	none	STRG.14177.3	1	STRG.14177.2,STRG.14177.4	2
scaffold_13	alt_acceptor	2357390	2357391	+	asmbl_10594	none	STRG.15564.12	1	STRG.15564.11,STRG.15564.2,STRG.15564.5	3
scaffold_10	spliced_intron	11971420	11971467	+	asmbl_3509	none	STRG.12838.2	1	STRG.12838.1,STRG.12838.3,STRG.12838.6	3
scaffold_21	spliced_intron	1653679	1654377	+	asmbl_28346,asmbl_28351	none	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058	4	Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1059	3
scaffold_12	ends_in_intron	7097482	7097482	+	asmbl_7711	none	blat.proc3825170.chain_3294	1	STRG.14774.1,blat.proc3825170.chain_3293	2
scaffold_1	retained_exon	4239799	4239871	+	asmbl_1652,asmbl_1653,asmbl_1655	none	STRG.256.3,STRG.256.5,blat.proc3825164.chain_401	3	STRG.256.2,STRG.256.4,blat.proc3825164.chain_403	3
scaffold_5	retained_exon	15044119	15044202	-	asmbl_44632,asmbl_44634,asmbl_44639	none	STRG.6698.2,STRG.6698.4,Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2827	4	STRG.6698.6,Trinity_GG_3732_c0_g1_i2,blat.proc3825150.chain_2825	3
scaffold_2	spliced_intron	8059380	8059478	-	asmbl_23310	none	STRG.2093.3	1	STRG.2093.1,Trinity_GG_1159_c0_g1_i1,blat.proc3825148.chain_2110	3
scaffold_17	retained_intron	14040943	14041125	+	asmbl_19379	none	STRG.20874.1,blat.proc3825174.chain_1785	2	STRG.20874.3	1
scaffold_5	skipped_exon	18327976	18328372	+	asmbl_46251	none	STRG.6965.2	1	STRG.6965.1,blat.proc3825166.chain_3169	2
scaffold_1	alt_acceptor	14522290	14522291	-	asmbl_930,asmbl_932	none	STRG.1050.2,STRG.1050.4,blat.proc3825148.chain_1051	3	STRG.1050.1,STRG.1050.3,blat.proc3825148.chain_1052,blat.proc3825148.chain_1053	4
scaffold_12	starts_in_intron	13403998	13403998	-	asmbl_8946	none	Trinity_GG_8526_c0_g1_i2,blat.proc3825156.chain_11	2	STRG.15219.3,blat.proc3825156.chain_10	2
scaffold_1	alt_donor	15888475	15888476	+	asmbl_2457	none	STRG.1119.3	1	STRG.1119.1,Trinity_GG_17960_c0_g1_i1,Trinity_GG_17960_c0_g1_i2,Trinity_GG_17960_c0_g1_i3,blat.proc3825164.chain_1258,blat.proc3825164.chain_1259,blat.proc3825164.chain_1261	7
scaffold_19	starts_in_intron	9430542	9430542	+	asmbl_21589	none	Trinity_GG_29672_c0_g1_i1,blat.proc3825174.chain_3363	2	STRG.22373.1,blat.proc3825174.chain_3362	2
scaffold_4	alternate_exon	247882	247934	+	asmbl_41091	none	Trinity_GG_19610_c0_g1_i1,blat.proc3825166.chain_586	2	STRG.4120.1	1
scaffold_8	starts_in_intron	17467674	17467674	-	asmbl_52465	none	blat.proc3825152.chain_2915	1	STRG.10668.1,blat.proc3825152.chain_2914	2
scaffold_15	retained_intron	4493112	4493215	+	asmbl_15144	none	blat.proc3825172.chain_2857	1	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2858	8
scaffold_8	starts_in_intron	16229762	16229762	+	asmbl_53436	none	STRG.10614.3	1	STRG.10614.1,STRG.10614.2,Trinity_GG_23224_c0_g1_i2,Trinity_GG_23224_c0_g1_i3,blat.proc3825168.chain_3186,blat.proc3825168.chain_3188	6
scaffold_1	alt_acceptor	3270497	3270498	-	asmbl_145	none	STRG.204.2	1	STRG.204.1,blat.proc3825148.chain_203,blat.proc3825148.chain_204	3
scaffold_25	alt_donor	3238622	3238623	-	asmbl_34116	none	STRG.27265.2	1	STRG.27265.1	1
scaffold_23	starts_in_intron	10977131	10977131	+	asmbl_31901,asmbl_31902	none	blat.proc3825176.chain_3178,blat.proc3825176.chain_3181	2	STRG.26307.1,STRG.26307.2,STRG.26307.4,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	7
scaffold_18	ends_in_intron	7684816	7684816	+	asmbl_20781	none	blat.proc3825174.chain_2520	1	STRG.21474.1,STRG.21474.2,STRG.21474.3,STRG.21474.4,Trinity_GG_29179_c0_g1_i14,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	12
scaffold_13	spliced_intron	2334729	2334832	+	asmbl_10599,asmbl_10605,asmbl_10608	none	STRG.15564.3,STRG.15564.5,blat.proc3825172.chain_224,blat.proc3825172.chain_230	4	STRG.15564.7	1
scaffold_20	starts_in_intron	8016172	8016172	+	asmbl_26740	none	Trinity_GG_30140_c1_g1_i1,blat.proc3825176.chain_422	2	STRG.23356.1,blat.proc3825176.chain_423	2
scaffold_11	starts_in_intron	4745611	4745611	-	asmbl_6624	none	blat.proc3825154.chain_2163	1	STRG.13567.1,STRG.13567.2,blat.proc3825154.chain_2162,blat.proc3825154.chain_2165,blat.proc3825154.chain_2166,blat.proc3825154.chain_2167	6
scaffold_7	skipped_exon	4498642	4501601	-	asmbl_50863	none	STRG.8821.2,blat.proc3825152.chain_1304	2	STRG.8821.1,Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1303	3
scaffold_3	alt_acceptor	5664140	5664141	+	asmbl_40071	none	STRG.3228.3,blat.proc3825164.chain_3483	2	STRG.3228.1,blat.proc3825164.chain_3482	2
scaffold_26	retained_intron	5891547	5891797	+	asmbl_35053,asmbl_35054	none	STRG.28300.3,blat.proc3825178.chain_1387	2	STRG.28300.1,blat.proc3825178.chain_1388	2
scaffold_20	skipped_exon	10384347	10384667	+	asmbl_26955	none	Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_671	2	STRG.23583.4	1
scaffold_16	spliced_intron	13922163	13922274	+	asmbl_16664	none	STRG.19788.1,blat.proc3825174.chain_687	2	Trinity_GG_28155_c0_g1_i2,blat.proc3825174.chain_686	2
scaffold_4	starts_in_intron	6283737	6283737	-	asmbl_42668	none	blat.proc3825150.chain_781	1	STRG.4498.1,STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i1,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778,blat.proc3825150.chain_779,blat.proc3825150.chain_780	15
scaffold_5	retained_intron	3935999	3936105	+	asmbl_45259	none	STRG.5863.1,Trinity_GG_20532_c0_g1_i3,blat.proc3825166.chain_2097	3	blat.proc3825166.chain_2095	1
scaffold_21	alternate_exon	728878	728948	+	asmbl_28293	none	STRG.23764.1	1	STRG.23764.2,STRG.23764.4,STRG.23764.5,Trinity_GG_30474_c0_g1_i2,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_969,blat.proc3825176.chain_971	7
scaffold_25	alternate_exon	9932461	9942299	-	asmbl_34530,asmbl_34531	none	STRG.27806.1,STRG.27806.2,Trinity_GG_15596_c0_g1_i1,blat.proc3825162.chain_1153	4	STRG.27806.3,blat.proc3825162.chain_1154	2
scaffold_27	spliced_intron	2047111	2047352	+	asmbl_36062	none	STRG.28688.1,blat.proc3825178.chain_1809	2	blat.proc3825178.chain_1811	1
scaffold_10	retained_intron	8329038	8329329	-	asmbl_4578	none	blat.proc3825154.chain_1191,blat.proc3825154.chain_1193	2	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1182,blat.proc3825154.chain_1186,blat.proc3825154.chain_1188,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190	7
scaffold_17	retained_exon	6822984	6823016	-	asmbl_17994	none	blat.proc3825158.chain_1393	1	blat.proc3825158.chain_1392	1
scaffold_1	skipped_exon	3496862	3497688	-	asmbl_146,asmbl_150	none	STRG.221.4,blat.proc3825148.chain_215,blat.proc3825148.chain_220	3	STRG.221.1,STRG.221.2,blat.proc3825148.chain_213,blat.proc3825148.chain_214,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_218,blat.proc3825148.chain_219,blat.proc3825148.chain_221	9
scaffold_4	alt_donor	14618985	14618986	+	asmbl_41898	none	STRG.5084.2	1	STRG.5084.1,blat.proc3825166.chain_1511	2
scaffold_9	retained_intron	12476191	12476332	+	asmbl_54438	none	STRG.11565.2,blat.proc3825170.chain_385	2	blat.proc3825170.chain_384,blat.proc3825170.chain_386	2
scaffold_4	ends_in_intron	14664578	14664578	-	asmbl_43070	none	Trinity_GG_2821_c0_g1_i2,blat.proc3825150.chain_1244	2	STRG.5094.1,blat.proc3825150.chain_1243	2
scaffold_3	retained_intron	13423924	13424513	-	asmbl_39259	none	STRG.3693.1,blat.proc3825148.chain_3584	2	STRG.3693.4,blat.proc3825148.chain_3590	2
scaffold_18	alt_donor	7948312	7948313	-	asmbl_19990,asmbl_19993	none	STRG.21494.1,STRG.21494.3,blat.proc3825158.chain_2402	3	STRG.21494.2,blat.proc3825158.chain_2403	2
scaffold_21	retained_intron	11103380	11103507	-	asmbl_28091	none	STRG.24581.1,Trinity_GG_13762_c0_g1_i2,blat.proc3825160.chain_1813,blat.proc3825160.chain_1814	4	STRG.24581.2	1
scaffold_19	alt_acceptor	6213462	6213463	+	asmbl_21400	none	STRG.22153.1,blat.proc3825174.chain_3106	2	STRG.22153.2,STRG.22153.3,blat.proc3825174.chain_3104,blat.proc3825174.chain_3107	4
scaffold_1	spliced_intron	18028833	18029186	-	asmbl_1076	none	STRG.1268.7	1	blat.proc3825164.chain_1345	1
scaffold_1	ends_in_intron	6821594	6821594	-	asmbl_381	none	STRG.473.2,Trinity_GG_259_c2_g1_i1,blat.proc3825148.chain_473	3	STRG.473.1	1
scaffold_3	skipped_exon	11644642	11645915	+	asmbl_40368	none	blat.proc3825166.chain_66	1	STRG.3597.1,blat.proc3825166.chain_65	2
scaffold_14	starts_in_intron	12325709	12325709	-	asmbl_13565	none	blat.proc3825156.chain_2394	1	STRG.17560.1,STRG.17560.2,blat.proc3825156.chain_2392,blat.proc3825156.chain_2393,blat.proc3825156.chain_2395	5
scaffold_11	spliced_intron	9185416	9185879	-	asmbl_6919	none	STRG.13963.2,Trinity_GG_7784_c0_g1_i1,blat.proc3825154.chain_2473	3	Trinity_GG_7784_c0_g2_i1,blat.proc3825154.chain_2474	2
scaffold_2	alt_acceptor	483872	483873	-	asmbl_22806	none	STRG.1532.2	1	STRG.1532.1,STRG.1532.3,blat.proc3825148.chain_1467	3
scaffold_25	alt_acceptor	4588480	4588481	-	asmbl_34214	none	STRG.27396.2	1	STRG.27396.1,STRG.27396.3,blat.proc3825162.chain_725,blat.proc3825162.chain_726	4
scaffold_13	alternate_exon	2311176	2335885	+	asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605	none	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,blat.proc3825172.chain_222,blat.proc3825172.chain_224	6	STRG.15564.9	1
scaffold_12	alt_acceptor	13110263	13110264	-	asmbl_8918	none	STRG.15201.1	1	STRG.15201.2,Trinity_GG_8497_c0_g1_i3,blat.proc3825154.chain_3714	3
scaffold_12	alt_acceptor	976555	976556	-	asmbl_8286	none	STRG.14442.4	1	STRG.14442.1,STRG.14442.2,STRG.14442.3,blat.proc3825154.chain_2955,blat.proc3825154.chain_2956,blat.proc3825154.chain_2958	6
scaffold_16	alt_donor	8025915	8025916	-	asmbl_17216	none	STRG.19442.2	1	STRG.19442.1,blat.proc3825158.chain_595	2
scaffold_19	spliced_intron	6213363	6213463	+	asmbl_21400	none	STRG.22153.1,blat.proc3825174.chain_3106	2	blat.proc3825174.chain_3105	1
scaffold_3	skipped_exon	18494690	18496221	-	asmbl_39627	none	STRG.4047.1,blat.proc3825150.chain_224	2	STRG.4047.2	1
scaffold_15	alt_donor	12422505	12422506	+	asmbl_15563	none	blat.proc3825172.chain_3326	1	STRG.18696.2	1
scaffold_7	alt_acceptor	142032	142033	-	asmbl_50674	none	STRG.8592.2	1	STRG.8592.1,blat.proc3825152.chain_1035	2
scaffold_8	alt_donor	15150634	15150635	-	asmbl_52323	none	STRG.10544.1,blat.proc3825152.chain_2780	2	STRG.10544.2	1
scaffold_12	retained_intron	7643813	7644059	+	asmbl_7775	none	Trinity_GG_25509_c0_g1_i1,blat.proc3825170.chain_3377	2	STRG.14844.1,Trinity_GG_25509_c0_g1_i2,blat.proc3825170.chain_3378	3
scaffold_1	spliced_intron	20687704	20687850	-	asmbl_1188	none	blat.proc3825148.chain_1342	1	STRG.1410.2	1
scaffold_9	ends_in_intron	6436202	6436202	-	asmbl_55061,asmbl_55063	none	blat.proc3825152.chain_3331,blat.proc3825152.chain_3332	2	STRG.11181.1,STRG.11181.2,blat.proc3825152.chain_3333	3
scaffold_16	starts_in_intron	4880020	4880020	-	asmbl_17077	none	blat.proc3825158.chain_415	1	STRG.19264.1	1
scaffold_1	ends_in_intron	7299670	7299670	+	asmbl_1900	none	Trinity_GG_17651_c0_g1_i2,blat.proc3825164.chain_676	2	STRG.522.1	1
scaffold_14	spliced_intron	13901208	13902169	+	asmbl_12512	none	STRG.17673.2	1	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2
scaffold_26	alt_acceptor	3338964	3338965	-	asmbl_35482,asmbl_35484,asmbl_35485	none	STRG.28013.2,STRG.28013.3,blat.proc3825162.chain_1262	3	STRG.28013.1	1
scaffold_3	alt_donor	10628351	10628352	+	asmbl_40286,asmbl_40287,asmbl_40289	none	STRG.3513.2,STRG.3513.4,blat.proc3825164.chain_3683,blat.proc3825164.chain_3687	4	STRG.3513.1,STRG.3513.5,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3684,blat.proc3825164.chain_3689	6
scaffold_8	retained_intron	9466054	9466151	-	asmbl_52038,asmbl_52040	none	Trinity_GG_5708_c0_g1_i2,blat.proc3825152.chain_2502	2	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5
scaffold_6	retained_intron	11499265	11499368	+	asmbl_47337	none	Trinity_GG_21639_c0_g1_i1,blat.proc3825168.chain_337	2	STRG.7947.1,Trinity_GG_21639_c0_g3_i1,blat.proc3825168.chain_340	3
scaffold_20	ends_in_intron	6652518	6652518	-	asmbl_25844,asmbl_25845,asmbl_25846	none	STRG.23241.2,blat.proc3825160.chain_348	2	STRG.23241.1,blat.proc3825160.chain_349	2
scaffold_13	spliced_intron	4458969	4459061	+	asmbl_10793,asmbl_10794,asmbl_10796,asmbl_10797	none	STRG.15770.1,STRG.15770.2,STRG.15770.3,STRG.15770.4,Trinity_GG_25976_c0_g1_i2,blat.proc3825172.chain_508,blat.proc3825172.chain_509,blat.proc3825172.chain_511	8	Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_512	2
scaffold_26	ends_in_intron	1891064	1891064	-	asmbl_35418	none	Trinity_GG_15660_c2_g1_i1,blat.proc3825162.chain_1245	2	STRG.27936.1,blat.proc3825162.chain_1241,blat.proc3825162.chain_1242	3
scaffold_9	alt_acceptor	3913098	3913099	-	asmbl_54950,asmbl_54951	none	STRG.11010.1,Trinity_GG_6105_c0_g1_i1,Trinity_GG_6105_c0_g1_i2,blat.proc3825152.chain_3262,blat.proc3825152.chain_3263	5	STRG.11010.2,STRG.11010.3	2
scaffold_4	starts_in_intron	6349424	6349424	+	asmbl_41406	none	Trinity_GG_2007_c0_g1_i1	1	Trinity_GG_2000_c0_g1_i2,blat.proc3825148.chain_3531,blat.proc3825148.chain_3538	3
scaffold_9	alt_acceptor	6846918	6846919	-	asmbl_55078,asmbl_55080	none	STRG.11196.1,STRG.11196.3,blat.proc3825152.chain_3346,blat.proc3825152.chain_3348	4	STRG.11196.2,blat.proc3825152.chain_3347	2
scaffold_2	starts_in_intron	3631783	3631783	+	asmbl_24294	none	blat.proc3825164.chain_1919	1	STRG.1787.1,STRG.1787.2,STRG.1787.3,Trinity_GG_18311_c0_g1_i6	4
scaffold_25	skipped_exon	3095414	3096909	-	asmbl_34093	none	STRG.27251.3	1	STRG.27251.2,blat.proc3825162.chain_555	2
scaffold_14	starts_in_intron	5587403	5587403	-	asmbl_13084	none	Trinity_GG_9552_c0_g1_i1,blat.proc3825156.chain_1845	2	STRG.17033.1,Trinity_GG_9552_c0_g1_i2,blat.proc3825156.chain_1846	3
scaffold_6	spliced_intron	299110	299335	+	asmbl_46648	none	STRG.7091.2,Trinity_GG_21228_c0_g1_i3,blat.proc3825166.chain_3318	3	STRG.7091.1,STRG.7091.3,Trinity_GG_21228_c0_g1_i2,Trinity_GG_21228_c0_g1_i4,blat.proc3825166.chain_3317,blat.proc3825166.chain_3319	6
scaffold_18	retained_intron	7662113	7662196	+	asmbl_20763,asmbl_20768,asmbl_20770	none	STRG.21471.2,STRG.21471.5,Trinity_GG_29183_c0_g1_i7	3	STRG.21471.1,STRG.21471.4,STRG.21471.6,Trinity_GG_29183_c0_g1_i11	4
scaffold_7	alt_acceptor	8827374	8827375	-	asmbl_51039	none	STRG.9121.1,blat.proc3825152.chain_1493	2	STRG.9121.2	1
scaffold_12	alt_acceptor	14055120	14055121	-	asmbl_8968	none	STRG.15228.1,Trinity_GG_8538_c0_g1_i2,blat.proc3825156.chain_28	3	STRG.15228.2,Trinity_GG_8538_c0_g1_i1,blat.proc3825156.chain_29	3
scaffold_23	spliced_intron	6634496	6634635	+	asmbl_31634,asmbl_31637,asmbl_31638,asmbl_31639,asmbl_31640	none	STRG.26012.1,STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897,blat.proc3825176.chain_2898	6	blat.proc3825176.chain_2895	1
scaffold_23	alt_acceptor	10938115	10938116	-	asmbl_31175,asmbl_31177,asmbl_31178	none	STRG.26299.1,STRG.26299.2,STRG.26299.3	3	blat.proc3825160.chain_3413,blat.proc3825160.chain_3414	2
scaffold_1	alt_acceptor	3680247	3680248	+	asmbl_1625	none	STRG.242.1,blat.proc3825164.chain_370,blat.proc3825164.chain_372	3	STRG.242.2,STRG.242.3,blat.proc3825164.chain_367	3
scaffold_2	skipped_exon	15267438	15267920	+	asmbl_24996,asmbl_24997,asmbl_25002,asmbl_25003,asmbl_25004,asmbl_25005	none	STRG.2485.1,STRG.2485.2,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2606,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	8	blat.proc3825164.chain_2604	1
scaffold_9	retained_intron	15384227	15384543	+	asmbl_54562	none	blat.proc3825170.chain_502	1	STRG.11739.1,blat.proc3825170.chain_501,blat.proc3825170.chain_503	3
scaffold_5	retained_intron	10196467	10198044	-	asmbl_44323	none	blat.proc3825150.chain_2530	1	blat.proc3825150.chain_2531	1
scaffold_23	starts_in_intron	7064187	7064187	+	asmbl_31671	none	Trinity_GG_31680_c0_g2_i1,blat.proc3825176.chain_2974	2	STRG.26040.1,blat.proc3825176.chain_2973	2
scaffold_4	starts_in_intron	6563303	6563303	+	asmbl_41410	none	blat.proc3825166.chain_960	1	STRG.4514.1,blat.proc3825166.chain_959	2
scaffold_21	starts_in_intron	5143797	5143797	-	asmbl_27615	none	blat.proc3825160.chain_1235	1	blat.proc3825160.chain_1234	1
scaffold_26	spliced_intron	5646059	5646185	-	asmbl_35617	none	blat.proc3825162.chain_1514	1	STRG.28272.1,STRG.28272.2,STRG.28272.3,Trinity_GG_15826_c2_g1_i1,blat.proc3825162.chain_1516	5
scaffold_1	skipped_exon	1561810	1563955	+	asmbl_1491	none	STRG.101.1,blat.proc3825164.chain_211	2	STRG.101.2	1
scaffold_13	retained_intron	7719414	7719504	-	asmbl_9907	none	blat.proc3825156.chain_885	1	STRG.16058.1,STRG.16058.2,Trinity_GG_8995_c0_g1_i3,blat.proc3825156.chain_886	4
scaffold_19	retained_exon	3670631	3671048	-	asmbl_22118	none	Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2894	2	STRG.22046.1,Trinity_GG_12309_c0_g1_i1,blat.proc3825158.chain_2893,blat.proc3825158.chain_2898	4
scaffold_13	alternate_exon	14862487	14863132	-	asmbl_10210	none	STRG.16531.2	1	STRG.16531.3,blat.proc3825156.chain_1362,blat.proc3825156.chain_1363	3
scaffold_1	ends_in_intron	5209907	5209907	+	asmbl_1714,asmbl_1718	none	blat.proc3825164.chain_465,blat.proc3825164.chain_474	2	STRG.329.1,STRG.329.2,STRG.329.3,blat.proc3825164.chain_464,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_468,blat.proc3825164.chain_470,blat.proc3825164.chain_471,blat.proc3825164.chain_472,blat.proc3825164.chain_476	11
scaffold_1	skipped_exon	14962555	14965421	+	asmbl_2416	none	STRG.1073.1,blat.proc3825164.chain_1156	2	STRG.1073.2	1
scaffold_28	retained_intron	293837	294231	+	asmbl_37268	none	STRG.29263.3,blat.proc3825178.chain_2492	2	STRG.29263.1,blat.proc3825178.chain_2490	2
scaffold_1	alt_donor	5765927	5765928	+	asmbl_1792	none	STRG.380.1,Trinity_GG_17567_c1_g1_i1,blat.proc3825164.chain_522	3	STRG.380.2,blat.proc3825164.chain_521	2
scaffold_7	ends_in_intron	1468149	1468149	-	asmbl_50739	none	Trinity_GG_4945_c0_g1_i3,blat.proc3825152.chain_1145	2	STRG.8644.1,STRG.8644.2,blat.proc3825152.chain_1144	3
scaffold_27	alt_donor	382926	382927	-	asmbl_36682,asmbl_36683	none	STRG.28567.3,STRG.28567.5,blat.proc3825162.chain_1733,blat.proc3825162.chain_1735	4	STRG.28567.4,Trinity_GG_15949_c1_g1_i4,blat.proc3825162.chain_1734,blat.proc3825162.chain_1736	4
scaffold_4	retained_exon	7267216	7267305	+	asmbl_41483,asmbl_41486	none	STRG.4561.5,STRG.4561.6,Trinity_GG_19860_c0_g1_i3,blat.proc3825166.chain_1049	4	STRG.4561.2,Trinity_GG_19860_c0_g1_i1,blat.proc3825166.chain_1050	3
scaffold_23	alt_acceptor	2590648	2590649	-	asmbl_30743,asmbl_30744	none	STRG.25725.1,STRG.25725.2,blat.proc3825160.chain_2774,blat.proc3825160.chain_2777	4	blat.proc3825160.chain_2779	1
scaffold_24	alt_acceptor	9956864	9956865	-	asmbl_33161	none	STRG.26968.8	1	STRG.26968.1,STRG.26968.2,STRG.26968.6,blat.proc3825162.chain_269,blat.proc3825162.chain_271,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	8
scaffold_6	alt_donor	10483513	10483514	-	asmbl_48703	none	STRG.7885.1,blat.proc3825152.chain_276	2	STRG.7885.2,blat.proc3825152.chain_275	2
scaffold_8	starts_in_intron	16388908	16388908	+	asmbl_53454	none	blat.proc3825168.chain_3194	1	STRG.10620.1,STRG.10620.2,STRG.10620.3,STRG.10620.4,Trinity_GG_23226_c0_g1_i2,Trinity_GG_23226_c0_g1_i3,Trinity_GG_23226_c0_g1_i4,Trinity_GG_23226_c0_g1_i6,blat.proc3825168.chain_3193,blat.proc3825168.chain_3195,blat.proc3825168.chain_3196,blat.proc3825168.chain_3197	12
scaffold_10	alt_acceptor	16475794	16475795	-	asmbl_5006	none	STRG.13119.1	1	STRG.13119.3,STRG.13119.4	2
scaffold_2	skipped_exon	2880763	2882183	-	asmbl_22931,asmbl_22933,asmbl_22938,asmbl_22940,asmbl_22941	none	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1667,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672	5	STRG.1736.3,blat.proc3825148.chain_1668,blat.proc3825148.chain_1670,blat.proc3825148.chain_1673,blat.proc3825148.chain_1674	5
scaffold_1	retained_intron	7370155	7370238	-	asmbl_431,asmbl_433,asmbl_434,asmbl_435	none	STRG.528.1,STRG.528.2,STRG.528.4,STRG.528.5	4	STRG.528.3,blat.proc3825148.chain_515	2
scaffold_10	retained_intron	12679575	12679670	+	asmbl_3537,asmbl_3538	none	STRG.12860.1,STRG.12860.2,Trinity_GG_24411_c0_g1_i2	3	STRG.12860.3,Trinity_GG_24411_c0_g1_i1	2
scaffold_2	alternate_exon	19280343	19280611	-	asmbl_23857	none	STRG.2794.2,blat.proc3825148.chain_2742	2	STRG.2794.1	1
scaffold_3	ends_in_intron	5751619	5751619	+	asmbl_40077,asmbl_40080	none	STRG.3240.2,blat.proc3825164.chain_3414	2	STRG.3240.3	1
scaffold_6	alt_acceptor	8642214	8642215	+	asmbl_47171	none	STRG.7754.2	1	STRG.7754.1,STRG.7754.3,blat.proc3825168.chain_188,blat.proc3825168.chain_189,blat.proc3825168.chain_190	5
scaffold_13	retained_intron	8103489	8103578	+	asmbl_11100	none	blat.proc3825172.chain_847	1	STRG.16088.1,blat.proc3825172.chain_846	2
scaffold_11	ends_in_intron	4744499	4744499	-	asmbl_6627	none	blat.proc3825154.chain_2162	1	STRG.13567.1,STRG.13567.2,blat.proc3825154.chain_2163,blat.proc3825154.chain_2164,blat.proc3825154.chain_2166,blat.proc3825154.chain_2167	6
scaffold_1	starts_in_intron	12500584	12500584	-	asmbl_725	none	STRG.865.2,blat.proc3825148.chain_762	2	STRG.865.1,blat.proc3825148.chain_763	2
scaffold_5	retained_intron	107811	108165	-	asmbl_43753,asmbl_43754	none	STRG.5574.1,Trinity_GG_3150_c0_g1_i2	2	STRG.5574.2	1
scaffold_10	alternate_exon	4542920	4543062	-	asmbl_4298	none	STRG.12283.2,blat.proc3825154.chain_833	2	STRG.12283.1,blat.proc3825154.chain_834	2
scaffold_17	alt_donor	9689021	9689022	+	asmbl_19123	none	STRG.20589.3,Trinity_GG_28575_c0_g1_i2,blat.proc3825174.chain_1424	3	STRG.20589.1,STRG.20589.2,Trinity_GG_28575_c0_g1_i1,Trinity_GG_28575_c0_g1_i3,blat.proc3825174.chain_1425,blat.proc3825174.chain_1426	6
scaffold_10	retained_intron	13304334	13304549	+	asmbl_3594	none	blat.proc3825170.chain_1461	1	STRG.12924.1,blat.proc3825170.chain_1458,blat.proc3825170.chain_1459,blat.proc3825170.chain_1460	4
scaffold_10	starts_in_intron	6911474	6911474	+	asmbl_3254	none	blat.proc3825170.chain_1078	1	STRG.12516.1,STRG.12516.2,blat.proc3825170.chain_1079	3
scaffold_14	spliced_intron	8695572	8695770	-	asmbl_13337,asmbl_13339	none	STRG.17305.1,blat.proc3825156.chain_2143,blat.proc3825156.chain_2145	3	blat.proc3825156.chain_2146	1
scaffold_15	retained_intron	15906877	15906998	-	asmbl_14809,asmbl_14812,asmbl_14814	none	STRG.18975.2,blat.proc3825158.chain_65,blat.proc3825158.chain_67	3	blat.proc3825158.chain_66	1
scaffold_19	spliced_intron	1508758	1509326	+	asmbl_21242,asmbl_21244,asmbl_21245,asmbl_21246	none	STRG.21912.1,STRG.21912.2,STRG.21912.3,STRG.21912.4,blat.proc3825174.chain_2939	5	STRG.21912.5,Trinity_GG_29420_c0_g2_i1,blat.proc3825174.chain_2938	3
scaffold_21	alt_acceptor	679451	679452	-	asmbl_27340	none	STRG.23755.4,blat.proc3825160.chain_886	2	STRG.23755.2,blat.proc3825160.chain_885	2
scaffold_8	alt_acceptor	4824509	4824510	+	asmbl_52852	none	STRG.9946.1,blat.proc3825168.chain_2478	2	STRG.9946.2	1
scaffold_6	alt_acceptor	18920664	18920665	-	asmbl_49289,asmbl_49290	none	STRG.8561.1,STRG.8561.2,blat.proc3825152.chain_1000	3	STRG.8561.3,blat.proc3825152.chain_1001	2
scaffold_15	alt_acceptor	12114568	12114569	+	asmbl_15539	none	STRG.18668.2	1	STRG.18668.1,blat.proc3825172.chain_3296,blat.proc3825172.chain_3297	3
scaffold_19	retained_intron	13224244	13224327	-	asmbl_22621,asmbl_22623	none	blat.proc3825158.chain_3433,blat.proc3825158.chain_3436	2	STRG.22653.1,STRG.22653.2,Trinity_GG_12588_c1_g1_i13,Trinity_GG_12588_c1_g1_i4,blat.proc3825158.chain_3428,blat.proc3825158.chain_3429,blat.proc3825158.chain_3430,blat.proc3825158.chain_3432,blat.proc3825158.chain_3434,blat.proc3825158.chain_3435	10
scaffold_1	alt_acceptor	12450568	12450569	+	asmbl_2219	none	STRG.859.3	1	STRG.859.1,STRG.859.2,Trinity_GG_17840_c0_g1_i2,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1027,blat.proc3825164.chain_1030,blat.proc3825164.chain_1031	7
scaffold_20	alt_acceptor	2403441	2403442	+	asmbl_26487	none	STRG.22972.2,blat.proc3825176.chain_156	2	blat.proc3825176.chain_155	1
scaffold_9	skipped_exon	5655421	5656306	+	asmbl_54056	none	STRG.11134.1,blat.proc3825168.chain_3680	2	STRG.11134.2	1
scaffold_4	alt_acceptor	17419086	17419087	-	asmbl_43262	none	STRG.5328.4	1	STRG.5328.1,STRG.5328.2	2
scaffold_19	alt_donor	856360	856361	+	asmbl_21220	none	STRG.21878.1	1	STRG.21878.2,Trinity_GG_29375_c1_g1_i1,blat.proc3825174.chain_2853,blat.proc3825174.chain_2854,blat.proc3825174.chain_2855	5
scaffold_9	starts_in_intron	15495850	15495850	-	asmbl_55533	none	blat.proc3825154.chain_217	1	STRG.11747.1,STRG.11747.3,blat.proc3825154.chain_215,blat.proc3825154.chain_218	4
scaffold_21	skipped_exon	11312862	11315663	+	asmbl_28923	none	STRG.24606.2	1	STRG.24606.1,blat.proc3825176.chain_1700	2
scaffold_28	skipped_exon	538019	538931	-	asmbl_37912	none	STRG.29277.3	1	STRG.29277.1,STRG.29277.2,blat.proc3825162.chain_2442,blat.proc3825162.chain_2443	4
scaffold_13	retained_exon	11380238	11381855	-	asmbl_10084	none	STRG.16301.1,blat.proc3825156.chain_1174	2	STRG.16301.3,STRG.16301.4,blat.proc3825156.chain_1169,blat.proc3825156.chain_1170,blat.proc3825156.chain_1173	5
scaffold_6	starts_in_intron	13225544	13225544	+	asmbl_47497,asmbl_47499,asmbl_47506,asmbl_47507,asmbl_47510	none	STRG.8084.4,STRG.8084.5,STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_569,blat.proc3825168.chain_577	6	STRG.8084.1,STRG.8084.2,STRG.8084.3,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_573,blat.proc3825168.chain_575,blat.proc3825168.chain_576	8
scaffold_4	retained_intron	7267306	7267957	+	asmbl_41480,asmbl_41485	none	STRG.4561.7,Trinity_GG_19860_c0_g1_i2,Trinity_GG_19860_c0_g1_i4,blat.proc3825166.chain_1047,blat.proc3825166.chain_1048	5	STRG.4561.5,STRG.4561.6,Trinity_GG_19860_c0_g1_i3,blat.proc3825166.chain_1049	4
scaffold_1	starts_in_intron	7772790	7772790	+	asmbl_1916,asmbl_1918	none	blat.proc3825164.chain_695,blat.proc3825164.chain_696	2	blat.proc3825164.chain_694	1
scaffold_15	alt_donor	12742577	12742578	+	asmbl_15599	none	STRG.18732.1,blat.proc3825172.chain_3378	2	STRG.18732.2,blat.proc3825172.chain_3379	2
scaffold_8	skipped_exon	14786	15882	-	asmbl_51679	none	STRG.9703.3,blat.proc3825152.chain_2072,blat.proc3825152.chain_2074	3	STRG.9703.2,blat.proc3825152.chain_2075	2
scaffold_27	alternate_exon	5678632	5678711	+	asmbl_36356,asmbl_36359,asmbl_36362	none	STRG.28977.3,STRG.28977.4,blat.proc3825178.chain_2111,blat.proc3825178.chain_2112,blat.proc3825178.chain_2115	5	STRG.28977.1,STRG.28977.2,blat.proc3825178.chain_2114	3
scaffold_7	starts_in_intron	18151515	18151515	+	asmbl_50513	none	STRG.9652.2	1	STRG.9652.1	1
scaffold_26	spliced_intron	3791186	3791394	+	asmbl_34835,asmbl_34838	none	STRG.28068.3,blat.proc3825178.chain_1145	2	blat.proc3825178.chain_1153	1
scaffold_14	alt_donor	8452119	8452120	-	asmbl_13317	none	Trinity_GG_9713_c0_g1_i1	1	Trinity_GG_9713_c0_g1_i3	1
scaffold_5	starts_in_intron	16939502	16939502	-	asmbl_44788	none	blat.proc3825150.chain_2996	1	STRG.6874.1,blat.proc3825150.chain_2993,blat.proc3825150.chain_2994,blat.proc3825150.chain_2995	4
scaffold_15	ends_in_intron	2563291	2563291	+	asmbl_15064	none	blat.proc3825172.chain_2735	1	STRG.18045.1,STRG.18045.2,STRG.18045.3	3
scaffold_10	retained_intron	7685649	7686027	+	asmbl_3296,asmbl_3297	none	STRG.12557.4,STRG.12557.5,blat.proc3825170.chain_1164,blat.proc3825170.chain_1166,blat.proc3825170.chain_1167,blat.proc3825170.chain_1168	6	STRG.12557.2,blat.proc3825170.chain_1170	2
scaffold_19	ends_in_intron	10852744	10852744	-	asmbl_22363	none	Trinity_GG_12436_c0_g1_i1,blat.proc3825158.chain_3113	2	STRG.22428.1,STRG.22428.2,Trinity_GG_12436_c0_g1_i3,blat.proc3825158.chain_3112	4
scaffold_22	starts_in_intron	8788462	8788462	-	asmbl_29504	none	Trinity_GG_14122_c0_g1_i4	1	STRG.25234.1	1
scaffold_1	alternate_exon	19358844	19359341	+	asmbl_2591	none	STRG.1351.2	1	STRG.1351.1,Trinity_GG_18099_c0_g1_i1,blat.proc3825164.chain_1470	3
scaffold_2	starts_in_intron	6526882	6526882	+	asmbl_24479	none	Trinity_GG_18418_c0_g1_i1,blat.proc3825164.chain_2101	2	STRG.2023.1,Trinity_GG_18418_c0_g1_i2,blat.proc3825164.chain_2100	3
scaffold_14	retained_exon	9272349	9273610	-	asmbl_13360,asmbl_13362,asmbl_13366	none	STRG.17338.1,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204,blat.proc3825156.chain_2207	6	STRG.17338.5	1
scaffold_15	alternate_exon	2563725	2565024	+	asmbl_15066	none	STRG.18045.3	1	STRG.18045.2	1
scaffold_13	spliced_intron	7265980	7266076	-	asmbl_9867,asmbl_9868,asmbl_9870,asmbl_9871	none	STRG.16029.1,blat.proc3825156.chain_939,blat.proc3825156.chain_940,blat.proc3825156.chain_941,blat.proc3825156.chain_943	5	blat.proc3825156.chain_942	1
scaffold_10	starts_in_intron	342751	342751	-	asmbl_3941	none	Trinity_GG_6630_c0_g1_i4,blat.proc3825154.chain_453	2	STRG.11919.1,STRG.11919.2,blat.proc3825154.chain_450,blat.proc3825154.chain_452	4
scaffold_6	alt_acceptor	299071	299072	+	asmbl_46649	none	STRG.7091.3,Trinity_GG_21228_c0_g1_i4,blat.proc3825166.chain_3317	3	STRG.7091.4,Trinity_GG_21228_c0_g1_i1,blat.proc3825166.chain_3316	3
scaffold_14	alt_acceptor	2463944	2463945	-	asmbl_12953,asmbl_12955	none	STRG.16856.1,STRG.16856.2,blat.proc3825156.chain_1687	3	STRG.16856.3,blat.proc3825156.chain_1689	2
scaffold_11	retained_intron	8014909	8015006	-	asmbl_6817	none	blat.proc3825154.chain_2391	1	STRG.13809.1,blat.proc3825154.chain_2392	2
scaffold_13	retained_intron	8112220	8112754	+	asmbl_11103	none	STRG.16091.2,Trinity_GG_26097_c0_g1_i1,blat.proc3825172.chain_742	3	STRG.16091.1,Trinity_GG_26097_c0_g2_i1	2
scaffold_27	retained_intron	2792841	2792968	+	asmbl_36111	none	STRG.28760.2	1	STRG.28760.1,blat.proc3825178.chain_1914,blat.proc3825178.chain_1916	3
scaffold_21	alternate_exon	257646	257779	-	asmbl_27282,asmbl_27287,asmbl_27288	none	STRG.23725.5,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_804,blat.proc3825160.chain_811,blat.proc3825160.chain_813	5	blat.proc3825160.chain_807	1
scaffold_6	alt_acceptor	12972143	12972144	+	asmbl_47459,asmbl_47461,asmbl_47462	none	STRG.8057.1,STRG.8057.3,blat.proc3825168.chain_536,blat.proc3825168.chain_537,blat.proc3825168.chain_539	5	STRG.8057.2,blat.proc3825168.chain_538	2
scaffold_22	alternate_exon	8016869	8017360	+	asmbl_30254	none	STRG.25156.2	1	STRG.25156.1,blat.proc3825176.chain_2288	2
scaffold_19	starts_in_intron	11411084	11411084	+	asmbl_21696	none	Trinity_GG_29742_c0_g1_i2,blat.proc3825174.chain_3478	2	STRG.22476.1,blat.proc3825174.chain_3479	2
scaffold_4	alternate_exon	5188255	5188315	-	asmbl_42564	none	STRG.4410.2,blat.proc3825150.chain_641	2	STRG.4410.1,STRG.4410.3,STRG.4410.4,blat.proc3825150.chain_643,blat.proc3825150.chain_644	5
scaffold_22	starts_in_intron	1005853	1005853	+	asmbl_29916	none	STRG.24754.4	1	STRG.24754.2,STRG.24754.3,Trinity_GG_30985_c0_g1_i9,blat.proc3825176.chain_1858,blat.proc3825176.chain_1859,blat.proc3825176.chain_1860,blat.proc3825176.chain_1861	7
scaffold_9	starts_in_intron	5138032	5138032	-	asmbl_54989	none	STRG.11093.3,blat.proc3825152.chain_3272	2	STRG.11093.1,STRG.11093.2,blat.proc3825152.chain_3270,blat.proc3825152.chain_3271	4
scaffold_2	ends_in_intron	17488467	17488467	-	asmbl_23733	none	Trinity_GG_1449_c0_g1_i3,blat.proc3825148.chain_2593	2	STRG.2639.1,blat.proc3825148.chain_2592	2
scaffold_614	starts_in_intron	4006	4006	+	asmbl_49468	none	blat.proc3825178.chain_3475	1	STRG.30405.1,Trinity_GG_34127_c0_g1_i1,blat.proc3825178.chain_3476,blat.proc3825178.chain_3477	4
scaffold_6	retained_intron	10916944	10917091	+	asmbl_47311	none	blat.proc3825168.chain_389	1	STRG.7909.3,blat.proc3825168.chain_386,blat.proc3825168.chain_387	3
scaffold_26	skipped_exon	5894384	5894720	-	asmbl_35643	none	STRG.28301.3	1	STRG.28301.1,STRG.28301.2,blat.proc3825162.chain_1468,blat.proc3825162.chain_1472,blat.proc3825162.chain_1473	5
scaffold_7	alternate_exon	6652792	6652956	-	asmbl_50928	none	STRG.8936.2,blat.proc3825152.chain_1367	2	STRG.8936.1,blat.proc3825152.chain_1366	2
scaffold_10	alternate_exon	1476639	1476679	+	asmbl_2944	none	STRG.12019.1	1	STRG.12019.2,Trinity_GG_23965_c0_g1_i1,blat.proc3825170.chain_712	3
scaffold_10	ends_in_intron	3285824	3285824	-	asmbl_4184	none	blat.proc3825154.chain_674	1	STRG.12153.1,blat.proc3825154.chain_673	2
scaffold_8	alt_donor	18420486	18420487	-	asmbl_52539	none	STRG.10740.2,Trinity_GG_5972_c0_g1_i3,blat.proc3825152.chain_3008	3	STRG.10740.1,Trinity_GG_5972_c0_g1_i1,blat.proc3825152.chain_3009	3
scaffold_5	alt_acceptor	11643332	11643333	+	asmbl_45755	none	STRG.6426.2,blat.proc3825166.chain_2586	2	STRG.6426.1	1
scaffold_17	spliced_intron	9004119	9005702	+	asmbl_19054,asmbl_19055	none	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4	blat.proc3825174.chain_1323	1
scaffold_17	alt_acceptor	7102086	7102087	+	asmbl_18894	none	STRG.20382.2,blat.proc3825174.chain_1181	2	STRG.20382.1,blat.proc3825174.chain_1182	2
scaffold_6	alternate_exon	5084654	5084835	-	asmbl_48398,asmbl_48400	none	STRG.7485.1,blat.proc3825150.chain_3671,blat.proc3825150.chain_3672	3	STRG.7485.2	1
scaffold_11	alternate_exon	2772483	2772718	+	asmbl_5377	none	STRG.13403.2	1	STRG.13403.1	1
scaffold_26	alternate_exon	9608494	9608765	+	asmbl_35248	none	STRG.28513.2	1	STRG.28513.3	1
scaffold_433	spliced_intron	4666	4794	-	asmbl_43702	none	STRG.30329.1	1	STRG.30329.2	1
scaffold_13	alternate_exon	1519188	1520389	-	asmbl_9414,asmbl_9415	none	STRG.15516.1,STRG.15516.2,STRG.15516.3,Trinity_GG_8698_c0_g1_i5,Trinity_GG_8699_c0_g1_i1,blat.proc3825156.chain_405,blat.proc3825156.chain_406	7	STRG.15516.4	1
scaffold_13	alternate_exon	14561660	14561813	-	asmbl_10202	none	blat.proc3825156.chain_1269	1	STRG.16504.1,STRG.16504.4,blat.proc3825156.chain_1271,blat.proc3825156.chain_1272	4
scaffold_1	spliced_intron	16800305	16801968	+	asmbl_2507	none	STRG.1181.1	1	Trinity_GG_18011_c0_g1_i2,Trinity_GG_18011_c0_g1_i4	2
scaffold_7	alt_donor	8281964	8281965	+	asmbl_49982	none	blat.proc3825168.chain_1489	1	STRG.9062.1,blat.proc3825168.chain_1490,blat.proc3825168.chain_1492	3
scaffold_20	alt_donor	6954679	6954680	-	asmbl_25852,asmbl_25857	none	STRG.23269.5,STRG.23269.6,blat.proc3825160.chain_308	3	STRG.23269.2,STRG.23269.3,blat.proc3825160.chain_306,blat.proc3825160.chain_307	4
scaffold_11	alternate_exon	4751421	4751475	+	asmbl_5516	none	STRG.13573.2	1	blat.proc3825170.chain_2101	1
scaffold_8	alt_donor	11612954	11612955	+	asmbl_53249	none	STRG.10359.1,blat.proc3825168.chain_2944	2	STRG.10359.2	1
scaffold_6	spliced_intron	12990908	12991437	-	asmbl_48856,asmbl_48859	none	STRG.8068.1,STRG.8068.3,blat.proc3825152.chain_492	3	STRG.8068.2,STRG.8068.4,blat.proc3825152.chain_489,blat.proc3825152.chain_495	4
scaffold_21	alternate_exon	403834	404475	-	asmbl_27309	none	STRG.23733.2	1	Trinity_GG_13226_c0_g1_i6,blat.proc3825160.chain_849	2
scaffold_12	skipped_exon	15094938	15097184	-	asmbl_9044	none	STRG.15320.2	1	Trinity_GG_8545_c1_g1_i6,blat.proc3825156.chain_51	2
scaffold_4	alt_acceptor	16139182	16139183	+	asmbl_41959	none	STRG.5185.1,blat.proc3825166.chain_1562	2	STRG.5185.2,blat.proc3825166.chain_1561	2
scaffold_11	starts_in_intron	8050258	8050258	+	asmbl_5711	none	STRG.13812.2,Trinity_GG_24922_c0_g1_i1,blat.proc3825170.chain_2359	3	STRG.13812.1,Trinity_GG_24922_c0_g2_i2,blat.proc3825170.chain_2360	3
scaffold_1	starts_in_intron	16927458	16927458	-	asmbl_1022	none	STRG.1196.2	1	STRG.1196.3,blat.proc3825148.chain_1141	2
scaffold_1	retained_intron	14427728	14428504	-	asmbl_923	none	STRG.1045.4,blat.proc3825148.chain_1050	2	STRG.1045.3,blat.proc3825148.chain_1049	2
scaffold_20	starts_in_intron	7474844	7474844	-	asmbl_25912	none	blat.proc3825160.chain_463	1	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_461,blat.proc3825160.chain_462,blat.proc3825160.chain_465,blat.proc3825160.chain_466,blat.proc3825160.chain_467	7
scaffold_1	alt_donor	1042580	1042581	+	asmbl_1453	none	STRG.62.4,Trinity_GG_17322_c1_g1_i1,blat.proc3825164.chain_93	3	STRG.62.2,blat.proc3825164.chain_92	2
scaffold_4	alt_acceptor	19591639	19591640	-	asmbl_43459	none	blat.proc3825150.chain_1745	1	blat.proc3825150.chain_1746	1
scaffold_22	retained_exon	7122703	7122873	+	asmbl_30155,asmbl_30158	none	STRG.25047.1,Trinity_GG_31177_c0_g1_i6,blat.proc3825176.chain_2177,blat.proc3825176.chain_2179	4	STRG.25047.2,Trinity_GG_31177_c0_g1_i3,blat.proc3825176.chain_2180,blat.proc3825176.chain_2181	4
scaffold_5	ends_in_intron	5865298	5865298	-	asmbl_44065	none	blat.proc3825150.chain_2225	1	STRG.6000.1	1
scaffold_5	starts_in_intron	6190323	6190323	+	asmbl_45412	none	blat.proc3825166.chain_2279	1	STRG.6033.1,STRG.6033.2,Trinity_GG_20625_c0_g1_i2,blat.proc3825166.chain_2276,blat.proc3825166.chain_2278,blat.proc3825166.chain_2280	6
scaffold_3	spliced_intron	7727603	7727817	+	asmbl_40175,asmbl_40178	none	STRG.3360.1,blat.proc3825164.chain_3637	2	blat.proc3825164.chain_3638	1
scaffold_5	alternate_exon	4660378	4660558	-	asmbl_43978	none	STRG.5923.1	1	STRG.5923.2	1
scaffold_9	alt_acceptor	4952566	4952567	-	asmbl_54982	none	STRG.11071.1,blat.proc3825152.chain_3309	2	STRG.11071.3,Trinity_GG_6140_c0_g1_i4	2
scaffold_8	alternate_exon	17813120	17818717	+	asmbl_53510	none	STRG.10693.4	1	STRG.10693.3,Trinity_GG_23223_c0_g1_i1,blat.proc3825168.chain_3179	3
scaffold_5	alt_donor	13887141	13887142	-	asmbl_44579	none	STRG.6617.3,blat.proc3825150.chain_2771	2	STRG.6617.2,blat.proc3825150.chain_2770	2
scaffold_18	alternate_exon	13482480	13482599	-	asmbl_20175	none	STRG.21793.3,blat.proc3825158.chain_2605	2	STRG.21793.1,blat.proc3825158.chain_2606	2
scaffold_21	alternate_exon	9881561	9881611	-	asmbl_27983	none	STRG.24452.1	1	STRG.24452.2	1
scaffold_1	alternate_exon	5996766	6000369	-	asmbl_310	none	STRG.404.2,blat.proc3825148.chain_399	2	blat.proc3825148.chain_402	1
scaffold_19	alt_donor	13192897	13192898	-	asmbl_22610,asmbl_22617,asmbl_22619,asmbl_22620,asmbl_22621,asmbl_22623	none	STRG.22653.1,Trinity_GG_12588_c1_g1_i6,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3431,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3436	8	blat.proc3825158.chain_3434	1
scaffold_13	alt_acceptor	4602269	4602270	-	asmbl_9647	none	Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665	2	STRG.15796.1	1
scaffold_25	spliced_intron	4442011	4442378	+	asmbl_33496,asmbl_33499	none	STRG.27374.3,STRG.27374.4,Trinity_GG_32407_c0_g1_i2,blat.proc3825178.chain_482	4	STRG.27374.1,Trinity_GG_32407_c0_g1_i1,blat.proc3825178.chain_481	3
scaffold_16	starts_in_intron	4041513	4041513	-	asmbl_17042	none	blat.proc3825158.chain_349	1	STRG.19222.1,STRG.19222.2,blat.proc3825158.chain_347,blat.proc3825158.chain_348	4
scaffold_21	retained_intron	5138274	5138792	-	asmbl_27610	none	STRG.24059.2	1	STRG.24059.3	1
scaffold_16	skipped_exon	14544410	14546401	-	asmbl_17462	none	STRG.19850.1	1	STRG.19850.2	1
scaffold_12	spliced_intron	15094938	15096253	-	asmbl_9047	none	Trinity_GG_8545_c1_g1_i6,blat.proc3825156.chain_51	2	STRG.15320.1,Trinity_GG_8545_c1_g1_i2,blat.proc3825156.chain_52	3
scaffold_19	alt_acceptor	8734050	8734051	-	asmbl_22308	none	STRG.22320.2	1	STRG.22320.1,blat.proc3825158.chain_3031	2
scaffold_7	alternate_exon	1441536	1447618	-	asmbl_50729	none	STRG.8648.1,Trinity_GG_4944_c0_g1_i1,blat.proc3825152.chain_1132,blat.proc3825152.chain_1143	4	Trinity_GG_4938_c4_g1_i1,blat.proc3825152.chain_1136	2
scaffold_4	alternate_exon	16719783	16721665	-	asmbl_43208	none	STRG.5250.2,blat.proc3825150.chain_1375,blat.proc3825150.chain_1376	3	STRG.5250.1,blat.proc3825150.chain_1374	2
scaffold_10	alt_donor	1073612	1073613	-	asmbl_4041	none	STRG.11991.2	1	STRG.11991.1	1
scaffold_10	starts_in_intron	16531662	16531662	+	asmbl_3724	none	blat.proc3825162.chain_3356	1	STRG.13128.1,blat.proc3825170.chain_1652,blat.proc3825170.chain_1653	3
scaffold_24	starts_in_intron	6226718	6226718	-	asmbl_32942,asmbl_32944	none	STRG.26685.6,blat.proc3825160.chain_3736	2	STRG.26685.1,STRG.26685.2,STRG.26685.3,STRG.26685.4,STRG.26685.5,STRG.26685.7,STRG.26685.8,Trinity_GG_14882_c0_g1_i8,blat.proc3825160.chain_3732,blat.proc3825160.chain_3733,blat.proc3825160.chain_3734,blat.proc3825160.chain_3735,blat.proc3825160.chain_3737	13
scaffold_1	spliced_intron	11895149	11895360	+	asmbl_2161	none	STRG.806.1,Trinity_GG_17815_c0_g1_i1,blat.proc3825164.chain_976	3	Trinity_GG_17815_c0_g1_i2,blat.proc3825164.chain_975	2
scaffold_9	alt_acceptor	6719849	6719850	-	asmbl_55068,asmbl_55070	none	STRG.11187.1,STRG.11187.2	2	STRG.11187.3	1
scaffold_28	retained_intron	2199318	2199412	+	asmbl_37349	none	STRG.29391.1,blat.proc3825178.chain_2548,blat.proc3825178.chain_2549	3	STRG.29391.2,STRG.29391.3,blat.proc3825178.chain_2550	3
scaffold_4	retained_intron	12628852	12629159	-	asmbl_42939	none	blat.proc3825150.chain_1040	1	STRG.4902.1,STRG.4902.2,blat.proc3825150.chain_1038,blat.proc3825150.chain_1039	4
scaffold_6	retained_intron	13964868	13965021	+	asmbl_47556	none	blat.proc3825168.chain_626	1	STRG.8150.1,STRG.8150.2,blat.proc3825168.chain_625	3
scaffold_18	alt_acceptor	13150111	13150112	-	asmbl_20168	none	STRG.21756.1	1	STRG.21756.3	1
scaffold_24	skipped_exon	3791108	3792178	+	asmbl_32163	none	STRG.26564.2	1	STRG.26564.1,blat.proc3825176.chain_3499	2
scaffold_8	retained_intron	9467898	9467974	-	asmbl_52036	none	blat.proc3825152.chain_2499	1	STRG.10207.1,blat.proc3825152.chain_2500,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5
scaffold_11	spliced_intron	9950767	9950860	-	asmbl_6971	none	STRG.14013.2	1	blat.proc3825154.chain_2519	1
scaffold_13	alt_acceptor	11441530	11441531	-	asmbl_10093	none	STRG.16302.1,blat.proc3825156.chain_1181	2	STRG.16302.2,blat.proc3825156.chain_1180	2
scaffold_11	spliced_intron	1285094	1285198	-	asmbl_6420,asmbl_6421,asmbl_6423	none	STRG.13318.1,STRG.13318.2,blat.proc3825154.chain_1868,blat.proc3825154.chain_1869,blat.proc3825154.chain_1870	5	blat.proc3825154.chain_1871	1
scaffold_9	alt_donor	571217	571218	+	asmbl_53771	none	STRG.10788.1	1	STRG.10788.2,STRG.10788.3	2
scaffold_6	ends_in_intron	2906507	2906507	+	asmbl_46786	none	blat.proc3825166.chain_3536	1	Trinity_GG_21339_c0_g1_i1,Trinity_GG_21339_c0_g1_i9,blat.proc3825166.chain_3531	3
scaffold_4	alt_donor	10982397	10982398	+	asmbl_41695	none	STRG.4819.1,blat.proc3825166.chain_1284	2	STRG.4819.2	1
scaffold_6	retained_intron	12484088	12484230	+	asmbl_47405,asmbl_47407	none	STRG.8007.1,STRG.8007.3,Trinity_GG_21697_c0_g1_i3,blat.proc3825168.chain_462	4	STRG.8007.2,STRG.8007.4,Trinity_GG_21697_c0_g1_i1,Trinity_GG_21697_c0_g1_i2,blat.proc3825168.chain_460,blat.proc3825168.chain_461	6
scaffold_5	starts_in_intron	9334242	9334242	-	asmbl_44274	none	Trinity_GG_3478_c0_g1_i2,blat.proc3825150.chain_2383	2	STRG.6258.1,Trinity_GG_3478_c0_g1_i1,blat.proc3825150.chain_2382	3
scaffold_10	alternate_exon	11198791	11199165	-	asmbl_4773	none	STRG.12786.1,blat.proc3825154.chain_1416	2	STRG.12786.2	1
scaffold_14	starts_in_intron	7295451	7295451	+	asmbl_12151	none	STRG.17169.3	1	STRG.17169.1,STRG.17169.2,blat.proc3825172.chain_1939,blat.proc3825172.chain_1940,blat.proc3825172.chain_1941	5
scaffold_20	alt_donor	9185237	9185238	+	asmbl_26841	none	blat.proc3825160.chain_530,blat.proc3825176.chain_622	2	STRG.23464.1,blat.proc3825176.chain_621	2
scaffold_2	starts_in_intron	6899223	6899223	+	asmbl_24509	none	Trinity_GG_18453_c4_g1_i1,blat.proc3825164.chain_2165	2	blat.proc3825164.chain_2156,blat.proc3825164.chain_2158	2
scaffold_27	retained_intron	4938413	4938601	+	asmbl_36327,asmbl_36330	none	STRG.28932.3,blat.proc3825178.chain_2146	2	STRG.28932.1,STRG.28932.2,STRG.28932.4,blat.proc3825178.chain_2145,blat.proc3825178.chain_2147	5
scaffold_21	spliced_intron	7009648	7009840	-	asmbl_27772,asmbl_27773,asmbl_27774,asmbl_27775	none	STRG.24233.1,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393	5	STRG.24233.2,blat.proc3825160.chain_1394,blat.proc3825160.chain_1395	3
scaffold_26	starts_in_intron	426570	426570	+	asmbl_34681	none	Trinity_GG_32687_c0_g1_i5,blat.proc3825178.chain_940	2	STRG.27868.1,blat.proc3825178.chain_941,blat.proc3825178.chain_942	3
scaffold_9	alt_acceptor	573486	573487	+	asmbl_53774	none	STRG.10788.2	1	Trinity_GG_23309_c0_g1_i4,blat.proc3825168.chain_3341	2
scaffold_22	ends_in_intron	6130989	6130989	+	asmbl_30101	none	STRG.24968.6	1	STRG.24968.4,STRG.24968.7,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120,blat.proc3825176.chain_2124	6
scaffold_10	retained_exon	1175351	1175397	+	asmbl_2915	none	STRG.12009.2,blat.proc3825170.chain_770	2	STRG.12009.1,blat.proc3825170.chain_768	2
scaffold_20	ends_in_intron	11164432	11164432	-	asmbl_26144	none	Trinity_GG_13171_c0_g1_i3,blat.proc3825160.chain_722	2	STRG.23629.1	1
scaffold_14	ends_in_intron	6734307	6734307	-	asmbl_13155	none	blat.proc3825156.chain_1879	1	STRG.17119.1,blat.proc3825156.chain_1880	2
scaffold_3	alt_acceptor	16797210	16797211	-	asmbl_39515	none	STRG.3937.1,blat.proc3825150.chain_66	2	STRG.3937.3	1
scaffold_23	spliced_intron	362282	362408	-	asmbl_30595	none	blat.proc3825160.chain_2722	1	STRG.25564.1,STRG.25564.2,STRG.25564.3,Trinity_GG_14303_c0_g1_i3,blat.proc3825160.chain_2720,blat.proc3825160.chain_2723,blat.proc3825160.chain_2727	7
scaffold_4	retained_exon	12711343	12711354	+	asmbl_41742	none	blat.proc3825166.chain_1323	1	STRG.4912.1,blat.proc3825166.chain_1322	2
scaffold_11	spliced_intron	8050351	8050449	+	asmbl_5711	none	STRG.13812.2,Trinity_GG_24922_c0_g1_i1,blat.proc3825170.chain_2359	3	STRG.13812.1,Trinity_GG_24922_c0_g2_i2,blat.proc3825170.chain_2360	3
scaffold_27	alt_donor	4944498	4944499	+	asmbl_36325,asmbl_36327,asmbl_36328,asmbl_36329	none	STRG.28932.1,STRG.28932.2,STRG.28932.4,blat.proc3825178.chain_2146,blat.proc3825178.chain_2147	5	STRG.28932.3,blat.proc3825178.chain_2145	2
scaffold_12	alt_acceptor	7301370	7301371	-	asmbl_8569	none	STRG.14808.1,blat.proc3825154.chain_3320	2	STRG.14808.2,STRG.14808.3,blat.proc3825154.chain_3319	3
scaffold_13	retained_intron	7965217	7965352	-	asmbl_9924	none	STRG.16075.2	1	STRG.16075.1,blat.proc3825156.chain_949	2
scaffold_12	retained_intron	12288119	12288532	-	asmbl_8855,asmbl_8856	none	STRG.15130.3,STRG.15130.4,Trinity_GG_8430_c0_g1_i1,blat.proc3825154.chain_3606	4	STRG.15130.1,STRG.15130.2,STRG.15130.5	3
scaffold_28	alt_donor	7843903	7843904	-	asmbl_38423	none	STRG.29855.2,blat.proc3825162.chain_3038	2	STRG.29855.1,blat.proc3825162.chain_3039	2
scaffold_11	retained_intron	13541556	13541653	+	asmbl_6061	none	Trinity_GG_25145_c0_g1_i1,blat.proc3825170.chain_2754	2	STRG.14211.1,STRG.14211.2,Trinity_GG_25145_c0_g1_i2,blat.proc3825170.chain_2755	4
scaffold_19	ends_in_intron	3682970	3682970	+	asmbl_21338	none	blat.proc3825174.chain_3088	1	STRG.22058.3	1
scaffold_3	retained_intron	3062725	3062797	+	asmbl_39931	none	STRG.3056.1,blat.proc3825164.chain_3289,blat.proc3825164.chain_3291	3	STRG.3056.2,Trinity_GG_19037_c0_g1_i2,blat.proc3825164.chain_3290	3
scaffold_4	retained_intron	4371150	4371554	+	asmbl_41241	none	blat.proc3825166.chain_790	1	STRG.4338.1,blat.proc3825166.chain_788,blat.proc3825166.chain_789	3
scaffold_11	retained_intron	14532679	14532928	+	asmbl_6091,asmbl_6092	none	STRG.14252.1,Trinity_GG_25124_c0_g1_i4,blat.proc3825170.chain_2708,blat.proc3825170.chain_2709	4	STRG.14252.2,Trinity_GG_25124_c0_g1_i1,blat.proc3825170.chain_2710	3
scaffold_8	alt_donor	11853070	11853071	+	asmbl_53278,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53290,asmbl_53293	none	STRG.10390.3,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	4	STRG.10390.2,blat.proc3825168.chain_3026	2
scaffold_16	alt_acceptor	8650119	8650120	+	asmbl_16437,asmbl_16438	none	STRG.19493.3,blat.proc3825174.chain_415	2	STRG.19493.1,STRG.19493.2,blat.proc3825174.chain_411,blat.proc3825174.chain_414	4
scaffold_19	alt_acceptor	7584732	7584733	+	asmbl_21479	none	blat.proc3825174.chain_3240	1	STRG.22236.1,STRG.22236.2,Trinity_GG_29596_c1_g1_i2,blat.proc3825174.chain_3233,blat.proc3825174.chain_3235,blat.proc3825174.chain_3236,blat.proc3825174.chain_3239	7
scaffold_5	retained_intron	7320452	7320503	+	asmbl_45493	none	Trinity_GG_20663_c0_g2_i1	1	STRG.6129.1,blat.proc3825166.chain_2350	2
scaffold_9	starts_in_intron	13856157	13856157	-	asmbl_55449	none	blat.proc3825154.chain_106	1	STRG.11654.3	1
scaffold_11	alternate_exon	11635942	11636184	+	asmbl_5980,asmbl_5982	none	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2639	3	blat.proc3825170.chain_2635,blat.proc3825170.chain_2637,blat.proc3825170.chain_2640	3
scaffold_9	ends_in_intron	10908685	10908685	+	asmbl_54303	none	Trinity_GG_23620_c0_g1_i2,blat.proc3825170.chain_102	2	STRG.11402.1,blat.proc3825170.chain_101	2
scaffold_9	spliced_intron	3673495	3673823	-	asmbl_54920,asmbl_54921,asmbl_54925,asmbl_54926,asmbl_54927,asmbl_54928	none	STRG.10993.1,STRG.10993.2,STRG.10993.4,STRG.10993.5,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	8	Trinity_GG_6077_c0_g1_i7,Trinity_GG_6077_c2_g1_i1,blat.proc3825152.chain_3214,blat.proc3825152.chain_3223	4
scaffold_19	ends_in_intron	12356464	12356464	+	asmbl_21792	none	STRG.22567.1	1	STRG.22567.2	1
scaffold_25	starts_in_intron	8698368	8698368	-	asmbl_34461	none	STRG.27695.1,blat.proc3825162.chain_1021,blat.proc3825162.chain_1022,blat.proc3825162.chain_1024	4	STRG.27695.2,STRG.27695.3,STRG.27695.4,STRG.27695.5,blat.proc3825162.chain_1020,blat.proc3825162.chain_1023,blat.proc3825162.chain_1025	7
scaffold_23	starts_in_intron	8001011	8001011	+	asmbl_31751	none	Trinity_GG_31737_c0_g1_i1	1	STRG.26113.1,STRG.26113.2	2
scaffold_11	retained_intron	3358702	3358797	+	asmbl_5423	none	blat.proc3825170.chain_2003	1	STRG.13469.1,blat.proc3825170.chain_2004	2
scaffold_12	spliced_intron	16399852	16401627	+	asmbl_8171	none	STRG.15402.2,Trinity_GG_25733_c0_g1_i3,blat.proc3825172.chain_44	3	STRG.15402.1,STRG.15402.3,STRG.15402.5,STRG.15402.6,Trinity_GG_25733_c0_g1_i10,Trinity_GG_25733_c0_g1_i11,Trinity_GG_25733_c0_g1_i13,blat.proc3825172.chain_40,blat.proc3825172.chain_46,blat.proc3825172.chain_47,blat.proc3825172.chain_48	11
scaffold_5	alt_acceptor	15620497	15620498	-	asmbl_44709	none	STRG.6750.2	1	STRG.6750.1,blat.proc3825150.chain_2933,blat.proc3825150.chain_2934	3
scaffold_18	retained_intron	13033293	13033322	+	asmbl_20990	none	Trinity_GG_29335_c0_g1_i1	1	blat.proc3825174.chain_2785	1
scaffold_8	alt_donor	11167529	11167530	-	asmbl_52135	none	STRG.10327.2,blat.proc3825152.chain_2568	2	STRG.10327.1,blat.proc3825152.chain_2567,blat.proc3825152.chain_2569	3
scaffold_6	retained_intron	8582069	8582179	+	asmbl_47152,asmbl_47153	none	STRG.7738.2,STRG.7738.3	2	STRG.7738.4,blat.proc3825168.chain_176	2
scaffold_5	alt_acceptor	13301605	13301606	+	asmbl_45877	none	STRG.6578.2	1	STRG.6578.1	1
scaffold_9	retained_intron	634983	635016	+	asmbl_53776	none	Trinity_GG_23270_c0_g1_i1,Trinity_GG_23270_c0_g1_i2,blat.proc3825168.chain_3276,blat.proc3825168.chain_3277,blat.proc3825168.chain_3279	5	STRG.10791.1	1
scaffold_1	alt_donor	7814114	7814115	+	asmbl_1925	none	STRG.539.2	1	STRG.539.3	1
scaffold_17	retained_intron	13196891	13197082	-	asmbl_18363	none	blat.proc3825158.chain_1826	1	STRG.20817.1,STRG.20817.2,blat.proc3825158.chain_1827,blat.proc3825158.chain_1830,blat.proc3825174.chain_1690	5
scaffold_1	alternate_exon	19698339	19698434	-	asmbl_1153,asmbl_1154	none	STRG.1358.1,blat.proc3825148.chain_1352,blat.proc3825148.chain_1353	3	STRG.1358.2	1
scaffold_13	spliced_intron	3530974	3531292	+	asmbl_10701,asmbl_10703,asmbl_10704,asmbl_10705,asmbl_10706	none	STRG.15676.1,STRG.15676.2,blat.proc3825172.chain_360,blat.proc3825172.chain_362,blat.proc3825172.chain_363,blat.proc3825172.chain_364	6	blat.proc3825172.chain_361	1
scaffold_11	starts_in_intron	12915594	12915594	-	asmbl_7107	none	STRG.14176.1,Trinity_GG_7929_c0_g1_i1,blat.proc3825154.chain_2721	3	STRG.14176.2,STRG.14176.3,blat.proc3825154.chain_2722	3
scaffold_9	starts_in_intron	3702630	3702630	-	asmbl_54931	none	blat.proc3825152.chain_3261	1	STRG.10979.1,blat.proc3825152.chain_3260	2
scaffold_26	retained_exon	9608494	9609701	+	asmbl_35244	none	STRG.28513.1,Trinity_GG_33085_c0_g1_i3,blat.proc3825178.chain_1633	3	STRG.28513.3	1
scaffold_2	spliced_intron	7892477	7892601	+	asmbl_24589,asmbl_24590,asmbl_24591,asmbl_24592,asmbl_24596,asmbl_24597	none	STRG.2085.1,STRG.2085.2,STRG.2085.3,blat.proc3825164.chain_2201,blat.proc3825164.chain_2202,blat.proc3825164.chain_2203,blat.proc3825164.chain_2205,blat.proc3825164.chain_2208,blat.proc3825164.chain_2211	9	Trinity_GG_18472_c0_g1_i3,blat.proc3825164.chain_2209	2
scaffold_17	starts_in_intron	8605391	8605391	-	asmbl_18105	none	blat.proc3825158.chain_1493	1	STRG.20472.1,STRG.20472.2,Trinity_GG_11505_c1_g1_i1,Trinity_GG_11505_c1_g2_i1,blat.proc3825158.chain_1494,blat.proc3825158.chain_1495	6
scaffold_14	alt_acceptor	10641389	10641390	+	asmbl_12337	none	STRG.17418.2	1	STRG.17418.1,blat.proc3825172.chain_2089	2
scaffold_9	retained_exon	6741724	6741829	-	asmbl_55075,asmbl_55076	none	STRG.11188.2,blat.proc3825152.chain_3414	2	STRG.11188.1,blat.proc3825152.chain_3417	2
scaffold_6	spliced_intron	12484297	12484381	+	asmbl_47404,asmbl_47407	none	STRG.8007.2,STRG.8007.3,Trinity_GG_21697_c0_g1_i1,blat.proc3825168.chain_461	4	STRG.8007.1,STRG.8007.4,Trinity_GG_21697_c0_g1_i2,Trinity_GG_21697_c0_g1_i3,blat.proc3825168.chain_460,blat.proc3825168.chain_462	6
scaffold_6	alternate_exon	2863981	2864077	+	asmbl_46776	none	STRG.7284.2	1	STRG.7284.1	1
scaffold_6	alt_acceptor	4600508	4600509	+	asmbl_46890	none	STRG.7441.1,blat.proc3825166.chain_3567	2	STRG.7441.2	1
scaffold_15	spliced_intron	9004560	9004735	-	asmbl_14363	none	STRG.18444.3,blat.proc3825156.chain_3344	2	STRG.18444.1,blat.proc3825156.chain_3343	2
scaffold_12	retained_intron	14989527	14989688	-	asmbl_9027	none	Trinity_GG_8566_c0_g1_i6,blat.proc3825156.chain_115	2	STRG.15298.3,Trinity_GG_8566_c0_g1_i2,blat.proc3825156.chain_116	3
scaffold_14	alt_acceptor	11246769	11246770	-	asmbl_13461,asmbl_13463	none	STRG.17460.1,STRG.17460.4,blat.proc3825156.chain_2266	3	STRG.17460.3,blat.proc3825156.chain_2267	2
scaffold_21	starts_in_intron	10471151	10471151	+	asmbl_28876	none	blat.proc3825176.chain_1659	1	STRG.24515.1,blat.proc3825176.chain_1658,blat.proc3825176.chain_1661	3
scaffold_6	starts_in_intron	13354794	13354794	-	asmbl_48909	none	blat.proc3825152.chain_507	1	STRG.8094.1,STRG.8094.2,blat.proc3825152.chain_508,blat.proc3825152.chain_509,blat.proc3825152.chain_510	5
scaffold_17	retained_intron	2719992	2720105	+	asmbl_18692,asmbl_18693	none	STRG.20072.2,STRG.20072.3,Trinity_GG_28282_c0_g1_i2,blat.proc3825174.chain_904	4	STRG.20072.1	1
scaffold_9	alt_acceptor	4198711	4198712	+	asmbl_53937	none	STRG.11022.1,blat.proc3825168.chain_3533	2	STRG.11022.2,blat.proc3825168.chain_3532	2
scaffold_6	spliced_intron	13944744	13944958	+	asmbl_47552	none	STRG.8147.3	1	STRG.8147.1,STRG.8147.2,Trinity_GG_21800_c1_g1_i1,blat.proc3825168.chain_657	4
scaffold_7	alternate_exon	2707171	2707344	-	asmbl_50769	none	STRG.8697.2	1	STRG.8697.1,blat.proc3825152.chain_1137	2
scaffold_20	retained_intron	9628124	9629033	+	asmbl_26869,asmbl_26870	none	STRG.23501.1,STRG.23501.3,Trinity_GG_30232_c0_g1_i1,blat.proc3825176.chain_566,blat.proc3825176.chain_567	5	STRG.23501.2	1
scaffold_2	alt_donor	19127889	19127890	+	asmbl_25265	none	blat.proc3825164.chain_2970	1	blat.proc3825164.chain_2969	1
scaffold_7	spliced_intron	5183050	5183286	-	asmbl_50875	none	STRG.8855.1,blat.proc3825152.chain_1305	2	STRG.8855.2,blat.proc3825152.chain_1306	2
scaffold_8	alt_acceptor	9872527	9872528	-	asmbl_52058	none	STRG.10234.1,blat.proc3825152.chain_2490	2	STRG.10234.2	1
scaffold_21	starts_in_intron	7937088	7937088	-	asmbl_27870	none	blat.proc3825160.chain_1471	1	STRG.24331.1,blat.proc3825160.chain_1469,blat.proc3825160.chain_1472,blat.proc3825160.chain_1473	4
scaffold_1	alternate_exon	7114834	7114868	-	asmbl_413	none	STRG.508.2	1	STRG.508.1,blat.proc3825148.chain_475	2
scaffold_28	alternate_exon	1565300	1565419	+	asmbl_37307	none	STRG.29340.1,Trinity_GG_33559_c0_g1_i1	2	STRG.29340.2	1
scaffold_2	starts_in_intron	14535103	14535103	+	asmbl_24946	none	STRG.2455.3	1	STRG.2455.1,STRG.2455.2,blat.proc3825164.chain_2722,blat.proc3825164.chain_2723	4
scaffold_12	retained_intron	9505734	9505871	+	asmbl_7862,asmbl_7864	none	STRG.14930.2,Trinity_GG_25533_c0_g1_i1,Trinity_GG_25533_c0_g1_i2,blat.proc3825170.chain_3429,blat.proc3825170.chain_3430	5	STRG.14930.1,Trinity_GG_25533_c0_g1_i3,blat.proc3825170.chain_3428	3
scaffold_13	spliced_intron	8912349	8912432	+	asmbl_11156,asmbl_11157,asmbl_11158	none	STRG.16165.1,STRG.16165.2,STRG.16165.3,Trinity_GG_26201_c0_g1_i6,blat.proc3825172.chain_954,blat.proc3825172.chain_955,blat.proc3825172.chain_957,blat.proc3825172.chain_959	8	STRG.16165.4,Trinity_GG_26201_c0_g1_i1,blat.proc3825172.chain_958	3
scaffold_14	spliced_intron	1070202	1070949	+	asmbl_11788,asmbl_11790,asmbl_11791,asmbl_11792,asmbl_11797	none	STRG.16766.1,STRG.16766.2,STRG.16766.5,Trinity_GG_26535_c0_g1_i7,blat.proc3825172.chain_1534,blat.proc3825172.chain_1536,blat.proc3825172.chain_1539	7	STRG.16766.3,Trinity_GG_26535_c0_g1_i1,blat.proc3825172.chain_1533,blat.proc3825172.chain_1535,blat.proc3825172.chain_1537,blat.proc3825172.chain_1538	6
scaffold_13	retained_intron	3734866	3734962	+	asmbl_10737	none	blat.proc3825172.chain_448	1	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_445,blat.proc3825172.chain_446	11
scaffold_4	starts_in_intron	6191241	6191241	-	asmbl_42661,asmbl_42664	none	STRG.4491.2,blat.proc3825150.chain_677	2	STRG.4491.1,STRG.4491.3,Trinity_GG_2477_c0_g1_i3,blat.proc3825150.chain_678,blat.proc3825150.chain_679	5
scaffold_11	alternate_exon	9700111	9707494	-	asmbl_6952	none	STRG.13992.3,Trinity_GG_7828_c1_g1_i3,blat.proc3825154.chain_2538,blat.proc3825170.chain_2504	4	STRG.13992.5	1
scaffold_15	ends_in_intron	4094900	4094900	+	asmbl_15121	none	Trinity_GG_27272_c0_g2_i3,blat.proc3825172.chain_2820	2	STRG.18154.1,STRG.18154.2,blat.proc3825172.chain_2821,blat.proc3825172.chain_2822	4
scaffold_8	alternate_exon	16081325	16081401	-	asmbl_52360	none	STRG.10591.3,blat.proc3825152.chain_2764	2	STRG.10591.1,STRG.10591.2,blat.proc3825152.chain_2763	3
scaffold_21	alt_donor	3256471	3256472	+	asmbl_28482	none	STRG.23951.1,blat.proc3825176.chain_1084	2	STRG.23951.2,blat.proc3825176.chain_1085	2
scaffold_1	ends_in_intron	14077631	14077631	+	asmbl_2334	none	blat.proc3825164.chain_1137	1	STRG.1003.2,blat.proc3825164.chain_1136	2
scaffold_16	alt_acceptor	5387833	5387834	-	asmbl_17092,asmbl_17094	none	STRG.19287.1,blat.proc3825158.chain_441,blat.proc3825158.chain_442	3	STRG.19287.3	1
scaffold_9	alt_donor	4849312	4849313	+	asmbl_53962	none	STRG.11060.1,blat.proc3825168.chain_3479	2	Trinity_GG_23406_c0_g1_i2,blat.proc3825168.chain_3480	2
scaffold_7	skipped_exon	18392945	18394646	-	asmbl_51480	none	blat.proc3825152.chain_2020	1	STRG.9670.1,STRG.9670.2,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016,blat.proc3825152.chain_2021	13
scaffold_10	alternate_exon	7670983	7671552	+	asmbl_3295	none	STRG.12556.1	1	STRG.12556.2	1
scaffold_3	starts_in_intron	10575893	10575893	+	asmbl_40276	none	STRG.3497.2	1	STRG.3497.1,Trinity_GG_19288_c0_g1_i1,blat.proc3825166.chain_21	3
scaffold_13	starts_in_intron	1238377	1238377	+	asmbl_10545	none	Trinity_GG_25867_c0_g1_i8,blat.proc3825172.chain_309	2	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,STRG.15494.7,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_311,blat.proc3825172.chain_312	11
scaffold_21	alt_donor	2484563	2484564	-	asmbl_27467,asmbl_27468	none	STRG.23873.1,STRG.23873.4,Trinity_GG_13318_c0_g1_i2,blat.proc3825160.chain_1023	4	STRG.23873.3	1
scaffold_2	skipped_exon	15507893	15509287	-	asmbl_23638	none	blat.proc3825148.chain_2501	1	STRG.2513.1	1
scaffold_20	retained_intron	10070223	10070662	-	asmbl_26077	none	STRG.23549.2,blat.proc3825160.chain_633	2	STRG.23549.1,Trinity_GG_13135_c0_g1_i2,blat.proc3825160.chain_632,blat.proc3825160.chain_634	4
scaffold_6	alternate_exon	8548635	8548666	+	asmbl_47146	none	STRG.7732.2,Trinity_GG_21552_c0_g1_i2,blat.proc3825168.chain_164	3	STRG.7732.1,Trinity_GG_21552_c0_g1_i1,blat.proc3825168.chain_165	3
scaffold_17	ends_in_intron	10027336	10027336	+	asmbl_19159	none	Trinity_GG_28611_c1_g1_i1	1	STRG.20619.1,blat.proc3825174.chain_1506	2
scaffold_1	retained_exon	10690545	10690595	-	asmbl_596	none	STRG.698.1,blat.proc3825148.chain_705	2	STRG.698.2,blat.proc3825148.chain_706	2
scaffold_23	skipped_exon	2207890	2209152	-	asmbl_30713	none	STRG.25698.5	1	STRG.25698.3,STRG.25698.6	2
scaffold_17	alt_acceptor	10123223	10123224	+	asmbl_19181	none	STRG.20628.2	1	STRG.20628.1,STRG.20628.3	2
scaffold_26	retained_intron	9773422	9774174	+	asmbl_35256,asmbl_35257,asmbl_35258,asmbl_35259,asmbl_35260,asmbl_35261	none	STRG.28516.4,Trinity_GG_33091_c0_g1_i3,blat.proc3825178.chain_1653	3	STRG.28516.5,STRG.28516.6	2
scaffold_11	alt_donor	7351148	7351149	+	asmbl_5668	none	STRG.13747.2	1	STRG.13747.1,Trinity_GG_24880_c0_g1_i1,blat.proc3825170.chain_2278	3
scaffold_10	retained_intron	13282361	13283807	-	asmbl_4864	none	STRG.12922.1,STRG.12922.4,Trinity_GG_7237_c3_g1_i1,Trinity_GG_7237_c4_g1_i1,blat.proc3825154.chain_1550,blat.proc3825154.chain_1553,blat.proc3825154.chain_1554	7	STRG.12922.2	1
scaffold_1	retained_intron	103635	103805	+	asmbl_1398	none	blat.proc3825164.chain_108	1	STRG.12.1,Trinity_GG_17334_c0_g1_i2,blat.proc3825164.chain_105,blat.proc3825164.chain_106,blat.proc3825164.chain_107,blat.proc3825164.chain_109	6
scaffold_18	alt_acceptor	7875029	7875030	+	asmbl_20810,asmbl_20811,asmbl_20813,asmbl_20814	none	STRG.21491.1,STRG.21491.2,STRG.21491.3,blat.proc3825174.chain_2468,blat.proc3825174.chain_2469,blat.proc3825174.chain_2471,blat.proc3825174.chain_2472	7	STRG.21491.4,STRG.21491.5,blat.proc3825174.chain_2470	3
scaffold_2	starts_in_intron	1068795	1068795	-	asmbl_22835	none	blat.proc3825162.chain_3389	1	STRG.1581.1,blat.proc3825162.chain_3388	2
scaffold_11	retained_intron	257277	257296	+	asmbl_5283	none	Trinity_GG_24610_c0_g1_i1,blat.proc3825170.chain_1830	2	STRG.13260.1	1
scaffold_10	retained_intron	3714042	3714121	+	asmbl_3061,asmbl_3062	none	STRG.12198.1,blat.proc3825170.chain_905,blat.proc3825170.chain_906	3	STRG.12198.2	1
scaffold_16	starts_in_intron	7607841	7607841	-	asmbl_17186	none	blat.proc3825158.chain_531	1	STRG.19416.1,blat.proc3825158.chain_530	2
scaffold_24	starts_in_intron	6783866	6783866	-	asmbl_32976	none	STRG.26733.3	1	STRG.26733.1,STRG.26733.2,STRG.26733.4	3
scaffold_4	alt_acceptor	4453198	4453199	+	asmbl_41275,asmbl_41278	none	STRG.4355.1,blat.proc3825166.chain_830	2	STRG.4355.2	1
scaffold_12	starts_in_intron	4624024	4624024	-	asmbl_8426	none	blat.proc3825154.chain_3157	1	STRG.14647.1,blat.proc3825154.chain_3158	2
scaffold_26	spliced_intron	5954384	5954477	-	asmbl_35654,asmbl_35656	none	STRG.28307.1,STRG.28307.2,blat.proc3825162.chain_1520	3	blat.proc3825162.chain_1519	1
scaffold_5	skipped_exon	2166979	2168141	-	asmbl_43876	none	STRG.5754.2	1	STRG.5754.1,STRG.5754.3,blat.proc3825150.chain_1989	3
scaffold_17	alt_donor	10193985	10193986	-	asmbl_18232	none	STRG.20638.2	1	STRG.20638.1,blat.proc3825158.chain_1670	2
scaffold_23	alternate_exon	2222193	2222393	-	asmbl_30712,asmbl_30714,asmbl_30716	none	STRG.25698.1,STRG.25698.2,STRG.25698.3	3	STRG.25698.6	1
scaffold_17	starts_in_intron	5688704	5688704	-	asmbl_17947	none	blat.proc3825158.chain_1313	1	STRG.20271.1,blat.proc3825158.chain_1315	2
scaffold_7	alt_donor	12346465	12346466	+	asmbl_50245	none	STRG.9328.1,blat.proc3825168.chain_1858	2	STRG.9328.2	1
scaffold_20	alt_acceptor	11099034	11099035	+	asmbl_27010	none	STRG.23628.1,blat.proc3825176.chain_814	2	STRG.23628.2,blat.proc3825176.chain_813	2
scaffold_17	ends_in_intron	1519655	1519655	-	asmbl_17725	none	STRG.19992.2,blat.proc3825158.chain_1069	2	STRG.19992.1,blat.proc3825158.chain_1067	2
scaffold_5	skipped_exon	992901	994296	+	asmbl_45109	none	STRG.5651.1	1	STRG.5651.2,blat.proc3825166.chain_1830,blat.proc3825166.chain_1831	3
scaffold_11	ends_in_intron	2812241	2812241	-	asmbl_6514,asmbl_6515	none	Trinity_GG_17285_c0_g1_i1,blat.proc3825154.chain_2006	2	STRG.13406.1	1
scaffold_1	spliced_intron	11568439	11568517	-	asmbl_632,asmbl_633,asmbl_635,asmbl_637,asmbl_638	none	STRG.767.1,STRG.767.2,blat.proc3825148.chain_743,blat.proc3825148.chain_745,blat.proc3825148.chain_746,blat.proc3825148.chain_747	6	blat.proc3825148.chain_744	1
scaffold_10	skipped_exon	3384603	3386115	+	asmbl_3038	none	STRG.12169.2,Trinity_GG_24055_c0_g1_i1,blat.proc3825170.chain_870	3	STRG.12169.1,Trinity_GG_24055_c0_g1_i2,blat.proc3825170.chain_871	3
scaffold_9	alternate_exon	10847755	10847862	-	asmbl_55261	none	STRG.11394.2	1	STRG.11394.1,blat.proc3825152.chain_3531	2
scaffold_28	starts_in_intron	40593	40593	-	asmbl_37880	none	blat.proc3825162.chain_2389	1	STRG.29234.1,blat.proc3825162.chain_2390	2
scaffold_17	spliced_intron	9592999	9593177	-	asmbl_18181,asmbl_18183	none	STRG.20580.2,Trinity_GG_11573_c0_g1_i1,blat.proc3825158.chain_1601,blat.proc3825158.chain_1603	4	STRG.20580.3,blat.proc3825158.chain_1602	2
scaffold_9	alt_acceptor	2801966	2801967	+	asmbl_53859,asmbl_53860,asmbl_53861,asmbl_53863,asmbl_53867	none	STRG.10918.1,STRG.10918.2,STRG.10918.4,STRG.10918.5,STRG.10918.6,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3430,blat.proc3825168.chain_3431	8	blat.proc3825168.chain_3428	1
scaffold_26	spliced_intron	9773422	9774174	+	asmbl_35264,asmbl_35265	none	STRG.28516.5,STRG.28516.6	2	STRG.28516.4,Trinity_GG_33091_c0_g1_i3,blat.proc3825178.chain_1653	3
scaffold_3	retained_intron	7708801	7708889	-	asmbl_38980,asmbl_38984	none	blat.proc3825148.chain_3200,blat.proc3825148.chain_3204	2	STRG.3368.1,blat.proc3825148.chain_3197,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3201,blat.proc3825148.chain_3202,blat.proc3825148.chain_3203	7
scaffold_18	retained_exon	3917889	3918460	-	asmbl_19786	none	STRG.21203.3	1	STRG.21203.2	1
scaffold_21	spliced_intron	4649422	4649538	-	asmbl_27576	none	STRG.24010.1,blat.proc3825160.chain_1136	2	blat.proc3825160.chain_1137	1
scaffold_21	alternate_exon	8131428	8139076	-	asmbl_27892,asmbl_27895	none	blat.proc3825160.chain_1509,blat.proc3825160.chain_1512	2	blat.proc3825160.chain_1510	1
scaffold_13	retained_intron	16284302	16284439	+	asmbl_11568	none	STRG.16682.1,Trinity_GG_26480_c0_g1_i2,blat.proc3825172.chain_1433	3	STRG.16682.2,blat.proc3825172.chain_1434	2
scaffold_6	alternate_exon	12114680	12116670	+	asmbl_47377	none	STRG.7985.1	1	STRG.7985.3,Trinity_GG_21681_c0_g1_i2,blat.proc3825168.chain_429	3
scaffold_5	retained_intron	6576837	6576949	-	asmbl_44099	none	Trinity_GG_3360_c0_g1_i4,blat.proc3825150.chain_2174	2	STRG.6057.1,STRG.6057.2,blat.proc3825150.chain_2178,blat.proc3825150.chain_2180	4
scaffold_19	skipped_exon	3547741	3548310	-	asmbl_22114	none	STRG.22044.1	1	STRG.22044.2,blat.proc3825158.chain_2851	2
scaffold_11	starts_in_intron	2287963	2287963	+	asmbl_5368	none	blat.proc3825170.chain_1935	1	STRG.13393.1,blat.proc3825170.chain_1936	2
scaffold_11	alt_acceptor	2839517	2839518	+	asmbl_5386	none	STRG.13428.2,Trinity_GG_24640_c0_g1_i2,blat.proc3825170.chain_1885	3	STRG.13428.1,Trinity_GG_24640_c0_g1_i1,blat.proc3825170.chain_1884	3
scaffold_27	alt_donor	341027	341028	-	asmbl_36672,asmbl_36673,asmbl_36674	none	STRG.28561.1,STRG.28561.3,blat.proc3825162.chain_1740,blat.proc3825162.chain_1742,blat.proc3825162.chain_1743	5	STRG.28561.2,blat.proc3825162.chain_1739	2
scaffold_7	starts_in_intron	11121602	11121602	-	asmbl_51151	none	Trinity_GG_5209_c0_g1_i1,blat.proc3825152.chain_1604	2	STRG.9259.1,blat.proc3825152.chain_1605	2
scaffold_10	ends_in_intron	11970244	11970244	+	asmbl_3516	none	blat.proc3825170.chain_1447	1	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.5,STRG.12838.6	5
scaffold_24	retained_intron	7784554	7784674	-	asmbl_33061	none	blat.proc3825162.chain_211	1	blat.proc3825162.chain_212,blat.proc3825162.chain_213	2
scaffold_28	starts_in_intron	3735231	3735231	-	asmbl_38170	none	blat.proc3825162.chain_2738	1	STRG.29587.1,STRG.29587.2,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2739	6
scaffold_1	alternate_exon	20988651	20988977	+	asmbl_2670	none	STRG.1435.3,Trinity_GG_18143_c0_g1_i2,blat.proc3825164.chain_1567	3	blat.proc3825164.chain_1566	1
scaffold_5	retained_intron	11802717	11802845	+	asmbl_45761	none	blat.proc3825166.chain_2657	1	STRG.6437.1,Trinity_GG_20826_c0_g1_i2,blat.proc3825166.chain_2655	3
scaffold_11	alt_acceptor	3767796	3767797	-	asmbl_6577	none	STRG.13508.2	1	STRG.13508.1,STRG.13508.3,STRG.13508.4,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	5
scaffold_19	retained_intron	12972587	12973050	-	asmbl_22574	none	STRG.22618.3,Trinity_GG_12569_c0_g1_i5,blat.proc3825158.chain_3361	3	STRG.22618.2,Trinity_GG_12569_c0_g1_i6,blat.proc3825158.chain_3364	3
scaffold_20	ends_in_intron	9532281	9532281	+	asmbl_26862	none	blat.proc3825176.chain_645	1	STRG.23496.1,STRG.23496.2,blat.proc3825176.chain_642,blat.proc3825176.chain_644	4
scaffold_6	retained_intron	12628524	12628614	-	asmbl_48839	none	blat.proc3825152.chain_414	1	STRG.8021.1,STRG.8021.2,Trinity_GG_4556_c0_g1_i2,blat.proc3825152.chain_411,blat.proc3825152.chain_412,blat.proc3825152.chain_413	6
scaffold_8	retained_exon	18249902	18249987	-	asmbl_52527,asmbl_52529	none	STRG.10728.3,blat.proc3825152.chain_3015,blat.proc3825152.chain_3016	3	STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3018	5
scaffold_12	alt_acceptor	4105335	4105336	+	asmbl_7583	none	STRG.14597.3	1	STRG.14597.1	1
scaffold_16	alt_donor	8502371	8502372	+	asmbl_16397	none	STRG.19478.1	1	STRG.19478.2	1
scaffold_14	retained_intron	13901208	13902169	+	asmbl_12515,asmbl_12516	none	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2	STRG.17673.2	1
scaffold_2	starts_in_intron	7171908	7171908	+	asmbl_24538	none	Trinity_GG_18480_c0_g1_i2,blat.proc3825164.chain_2221	2	STRG.2052.1,Trinity_GG_18480_c0_g1_i1,blat.proc3825164.chain_2222	3
scaffold_11	alt_donor	11936926	11936927	-	asmbl_7043	none	STRG.14177.3	1	STRG.14177.2,STRG.14177.4	2
scaffold_13	retained_exon	7718019	7718107	-	asmbl_9904	none	STRG.16058.2,blat.proc3825156.chain_888	2	STRG.16058.1,blat.proc3825156.chain_890	2
scaffold_9	retained_intron	3413981	3414140	-	asmbl_54900	none	blat.proc3825152.chain_3204,blat.proc3825152.chain_3206	2	STRG.10955.3,blat.proc3825152.chain_3203	2
scaffold_18	spliced_intron	1896938	1897477	-	asmbl_19653,asmbl_19655,asmbl_19657,asmbl_19660,asmbl_19663	none	STRG.21081.10,STRG.21081.8,STRG.21081.9,blat.proc3825158.chain_2011,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017	7	STRG.21081.3,blat.proc3825158.chain_2010,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2018	5
scaffold_9	spliced_intron	4160412	4160541	-	asmbl_54957,asmbl_54958	none	STRG.11019.1,STRG.11019.2,blat.proc3825152.chain_3281	3	blat.proc3825152.chain_3279	1
scaffold_13	skipped_exon	12251472	12253713	+	asmbl_11353	none	STRG.16359.3	1	STRG.16359.1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1115	3
scaffold_27	ends_in_intron	6071616	6071616	+	asmbl_36372	none	blat.proc3825178.chain_2202	1	STRG.29007.1,STRG.29007.2,blat.proc3825178.chain_2203	3
scaffold_3	starts_in_intron	16991367	16991367	-	asmbl_39526	none	Trinity_GG_2139_c0_g1_i2	1	STRG.3942.1	1
scaffold_25	alt_acceptor	7318163	7318164	-	asmbl_34394	none	STRG.27577.1	1	Trinity_GG_15441_c0_g1_i3,blat.proc3825162.chain_910	2
scaffold_9	alternate_exon	78547	78587	+	asmbl_53749	none	STRG.10767.2	1	STRG.10767.1,Trinity_GG_23281_c0_g1_i1,blat.proc3825168.chain_3293	3
scaffold_4	skipped_exon	7151794	7152429	+	asmbl_41468	none	STRG.4559.1	1	STRG.4559.4	1
scaffold_6	spliced_intron	16387153	16387269	+	asmbl_47695	none	STRG.8369.1,Trinity_GG_21904_c0_g1_i1,blat.proc3825168.chain_813	3	Trinity_GG_21904_c0_g1_i2,blat.proc3825168.chain_812	2
scaffold_19	alt_donor	13262264	13262265	-	asmbl_22630,asmbl_22631	none	STRG.22647.1,blat.proc3825158.chain_3491,blat.proc3825158.chain_3493	3	STRG.22647.2	1
scaffold_22	retained_intron	4345965	4346077	+	asmbl_29982	none	STRG.24852.2,blat.proc3825176.chain_1947	2	STRG.24852.3,blat.proc3825176.chain_1949	2
scaffold_340	spliced_intron	4207	4444	+	asmbl_41018	none	STRG.30296.1	1	Trinity_GG_34082_c0_g2_i1	1
scaffold_12	alt_donor	10188526	10188527	-	asmbl_8731,asmbl_8733,asmbl_8734,asmbl_8735,asmbl_8738	none	STRG.14994.1,STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516,blat.proc3825154.chain_3520	7	STRG.14994.2,blat.proc3825154.chain_3517,blat.proc3825154.chain_3518	3
scaffold_10	alt_donor	549435	549436	-	asmbl_3963	none	STRG.11936.3,Trinity_GG_6600_c0_g1_i3,blat.proc3825154.chain_402	3	STRG.11936.1,STRG.11936.2,Trinity_GG_6600_c0_g1_i5,blat.proc3825154.chain_401,blat.proc3825154.chain_403	5
scaffold_22	alt_acceptor	3001962	3001963	-	asmbl_29162	none	STRG.24787.2,blat.proc3825160.chain_1974	2	STRG.24787.1,blat.proc3825160.chain_1973	2
scaffold_3	alt_acceptor	5003810	5003811	+	asmbl_40057	none	STRG.3206.2	1	STRG.3206.1	1
scaffold_25	spliced_intron	9337633	9337746	+	asmbl_33807	none	blat.proc3825178.chain_877,blat.proc3825178.chain_882	2	blat.proc3825178.chain_880	1
scaffold_24	spliced_intron	3328681	3328826	-	asmbl_32815	none	STRG.26530.1,blat.proc3825160.chain_3588	2	blat.proc3825160.chain_3589	1
scaffold_21	skipped_exon	10329322	10330565	-	asmbl_28036	none	STRG.24501.2	1	STRG.24501.3	1
scaffold_22	skipped_exon	4286224	4288162	-	asmbl_29241	none	STRG.24854.3	1	STRG.24854.1,blat.proc3825160.chain_2083,blat.proc3825160.chain_2084	3
scaffold_26	retained_intron	6660908	6661271	+	asmbl_35098	none	Trinity_GG_32983_c0_g1_i5,blat.proc3825178.chain_1444,blat.proc3825178.chain_1447	3	STRG.28376.1,blat.proc3825178.chain_1443,blat.proc3825178.chain_1445	3
scaffold_13	retained_intron	16515276	16515326	+	asmbl_11583	none	STRG.16700.1,Trinity_GG_26476_c0_g1_i1	2	blat.proc3825172.chain_1423	1
scaffold_6	alt_donor	13658200	13658201	-	asmbl_48928	none	STRG.8106.3,blat.proc3825152.chain_526	2	blat.proc3825152.chain_525	1
scaffold_2	alt_donor	3895330	3895331	-	asmbl_23014	none	STRG.1825.2,blat.proc3825148.chain_1760	2	STRG.1825.1,blat.proc3825148.chain_1759	2
scaffold_1	alternate_exon	3680407	3681609	+	asmbl_1629	none	STRG.242.3	1	blat.proc3825164.chain_369	1
scaffold_5	retained_intron	13022943	13023173	+	asmbl_45839	none	STRG.6532.2,blat.proc3825166.chain_2715	2	STRG.6532.3	1
scaffold_18	spliced_intron	2758917	2759003	-	asmbl_19736,asmbl_19738	none	STRG.21136.1,STRG.21136.2,blat.proc3825158.chain_2079,blat.proc3825158.chain_2080	4	Trinity_GG_11829_c0_g1_i3,blat.proc3825158.chain_2078,blat.proc3825158.chain_2081	3
scaffold_12	spliced_intron	11690593	11690936	-	asmbl_8824	none	STRG.15092.2,blat.proc3825154.chain_3615	2	Trinity_GG_8432_c0_g1_i1,blat.proc3825154.chain_3614	2
scaffold_24	alt_donor	5883579	5883580	-	asmbl_32911,asmbl_32912	none	STRG.26654.2,blat.proc3825162.chain_37	2	STRG.26654.1,STRG.26654.3,blat.proc3825162.chain_34,blat.proc3825162.chain_35,blat.proc3825162.chain_36	5
scaffold_7	alt_donor	12404050	12404051	-	asmbl_51213	none	STRG.9337.1,blat.proc3825152.chain_1618	2	STRG.9337.2,blat.proc3825152.chain_1617	2
scaffold_2	retained_intron	4838798	4839029	-	asmbl_23101,asmbl_23102	none	blat.proc3825148.chain_1918,blat.proc3825148.chain_1922	2	STRG.1905.1	1
scaffold_4	spliced_intron	5230743	5231130	-	asmbl_42573,asmbl_42576	none	STRG.4416.3,STRG.4416.5,blat.proc3825150.chain_649	3	STRG.4416.1,Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_650,blat.proc3825150.chain_651	4
scaffold_11	retained_exon	3025502	3025890	+	asmbl_5396	none	STRG.13434.2,blat.proc3825170.chain_1880	2	STRG.13434.1,STRG.13434.3,blat.proc3825170.chain_1879	3
scaffold_4	starts_in_intron	4679945	4679945	+	asmbl_41295	none	Trinity_GG_19743_c0_g1_i1,blat.proc3825166.chain_824	2	STRG.4368.1,blat.proc3825166.chain_823	2
scaffold_9	retained_intron	17469882	17470146	-	asmbl_55647	none	STRG.11840.1,blat.proc3825154.chain_348	2	STRG.11840.3,blat.proc3825154.chain_346	2
scaffold_1	starts_in_intron	11098762	11098762	+	asmbl_2062	none	blat.proc3825164.chain_867	1	STRG.731.1,STRG.731.2,blat.proc3825164.chain_868	3
scaffold_22	alt_donor	1002984	1002985	+	asmbl_29911,asmbl_29915	none	STRG.24754.3,blat.proc3825176.chain_1858	2	STRG.24754.1,STRG.24754.2,Trinity_GG_30985_c0_g1_i3,blat.proc3825176.chain_1857,blat.proc3825176.chain_1859,blat.proc3825176.chain_1861	6
scaffold_17	alt_donor	12223395	12223396	-	asmbl_18321	none	STRG.20758.2	1	STRG.20758.1,blat.proc3825158.chain_1699	2
scaffold_5	alt_acceptor	18719486	18719487	-	asmbl_44870	none	Trinity_GG_3866_c0_g1_i3,blat.proc3825150.chain_3066	2	STRG.7001.1,blat.proc3825150.chain_3065	2
scaffold_14	alternate_exon	8223639	8223768	+	asmbl_12206	none	Trinity_GG_26813_c1_g1_i1,blat.proc3825172.chain_2034	2	STRG.17237.1,blat.proc3825172.chain_2036	2
scaffold_23	retained_intron	1741287	1741399	+	asmbl_31352	none	blat.proc3825176.chain_2570	1	blat.proc3825176.chain_2571,blat.proc3825176.chain_2572,blat.proc3825176.chain_2573	3
scaffold_5	alt_donor	16519443	16519444	-	asmbl_44750	none	STRG.6842.1,blat.proc3825150.chain_3017	2	Trinity_GG_3836_c0_g2_i1,blat.proc3825150.chain_3018	2
scaffold_19	alternate_exon	5345204	5345338	-	asmbl_22154	none	STRG.22102.1	1	STRG.22102.2,STRG.22102.3,blat.proc3825158.chain_2954,blat.proc3825158.chain_2957	4
scaffold_11	alt_donor	3775807	3775808	-	asmbl_6574,asmbl_6576	none	STRG.13508.3,STRG.13508.4,blat.proc3825154.chain_2084	3	STRG.13508.1,blat.proc3825154.chain_2087	2
scaffold_11	retained_exon	9829604	9830657	+	asmbl_5908,asmbl_5913	none	STRG.14008.4,blat.proc3825170.chain_2565	2	STRG.14008.2,blat.proc3825170.chain_2556	2
scaffold_8	alt_acceptor	18085010	18085011	-	asmbl_52504,asmbl_52506	none	STRG.10710.4,Trinity_GG_5955_c0_g1_i2,blat.proc3825152.chain_2979	3	STRG.10710.1,STRG.10710.3,STRG.10710.5,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2982	5
scaffold_1	retained_exon	7376407	7376531	-	asmbl_432,asmbl_434	none	STRG.528.3,STRG.528.4,blat.proc3825148.chain_512	3	STRG.528.2	1
scaffold_18	alt_donor	7795790	7795791	-	asmbl_19979	none	STRG.21484.1,Trinity_GG_12016_c0_g1_i1,blat.proc3825158.chain_2388	3	STRG.21484.2,Trinity_GG_12016_c0_g1_i2,blat.proc3825158.chain_2390	3
scaffold_7	alternate_exon	12451550	12455508	-	asmbl_51231	none	Trinity_GG_5252_c0_g1_i20	1	Trinity_GG_5252_c0_g1_i10,blat.proc3825152.chain_1688	2
scaffold_12	alt_donor	10391428	10391429	-	asmbl_8750	none	STRG.15015.1,blat.proc3825154.chain_3537	2	STRG.15015.2,blat.proc3825154.chain_3535	2
scaffold_7	alt_acceptor	3432021	3432022	+	asmbl_49691	none	STRG.8751.2	1	STRG.8751.1,blat.proc3825168.chain_1232	2
scaffold_23	alternate_exon	4100043	4100716	-	asmbl_30834	none	blat.proc3825160.chain_3029	1	STRG.25826.1	1
scaffold_7	skipped_exon	15032178	15034345	-	asmbl_51355	none	STRG.9526.2	1	STRG.9526.1	1
scaffold_11	retained_intron	11943634	11943839	-	asmbl_7048	none	Trinity_GG_7854_c3_g1_i1,blat.proc3825154.chain_2599	2	STRG.14177.4,blat.proc3825154.chain_2596	2
scaffold_22	ends_in_intron	4244601	4244601	-	asmbl_29217	none	Trinity_GG_13909_c3_g1_i1,blat.proc3825160.chain_2082	2	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2081	4
scaffold_16	starts_in_intron	4064149	4064149	-	asmbl_17048	none	blat.proc3825158.chain_354	1	STRG.19223.1,STRG.19223.2,blat.proc3825158.chain_352	3
scaffold_14	ends_in_intron	15514080	15514080	+	asmbl_12613	none	blat.proc3825172.chain_2491	1	STRG.17788.1,Trinity_GG_27080_c0_g1_i1,blat.proc3825172.chain_2492	3
scaffold_25	retained_intron	5828738	5828914	-	asmbl_34297	none	blat.proc3825162.chain_881	1	STRG.27479.1,STRG.27479.4,Trinity_GG_15422_c0_g1_i7,blat.proc3825162.chain_875,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_879,blat.proc3825162.chain_880	8
scaffold_15	alt_acceptor	14742828	14742829	-	asmbl_14742	none	STRG.18889.1,blat.proc3825158.chain_15	2	STRG.18889.2,blat.proc3825158.chain_14	2
scaffold_6	alternate_exon	1746258	1746422	+	asmbl_46735,asmbl_46739	none	STRG.7231.1,STRG.7231.2,Trinity_GG_21249_c0_g1_i1,blat.proc3825166.chain_3354	4	STRG.7231.4,STRG.7231.5,blat.proc3825166.chain_3352	3
scaffold_15	alt_acceptor	9287345	9287346	+	asmbl_15384,asmbl_15385	none	STRG.18460.1,STRG.18460.2	2	blat.proc3825172.chain_3076,blat.proc3825172.chain_3077	2
scaffold_7	skipped_exon	1231311	1232985	+	asmbl_49599,asmbl_49604	none	STRG.8637.7,Trinity_GG_22033_c0_g1_i16,blat.proc3825168.chain_1080	3	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	8
scaffold_2	alt_acceptor	15267757	15267758	+	asmbl_24999	none	blat.proc3825164.chain_2603	1	STRG.2485.1,STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2605,blat.proc3825164.chain_2606,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	10
scaffold_26	retained_intron	6721964	6722044	+	asmbl_35107	none	STRG.28365.2,blat.proc3825178.chain_1438	2	STRG.28365.1,blat.proc3825178.chain_1439	2
scaffold_5	alt_acceptor	6667302	6667303	-	asmbl_44128	none	STRG.6073.2,blat.proc3825150.chain_2279	2	STRG.6073.1	1
scaffold_27	alternate_exon	5678470	5683824	+	asmbl_36357,asmbl_36360	none	STRG.28977.1,blat.proc3825178.chain_2114	2	STRG.28977.5	1
scaffold_1	retained_exon	978085	978183	-	asmbl_44	none	STRG.59.2	1	STRG.59.1,Trinity_GG_38_c0_g1_i1,blat.proc3825148.chain_74	3
scaffold_12	alternate_exon	13393932	13406730	-	asmbl_8943	none	STRG.15219.3,blat.proc3825156.chain_10,blat.proc3825156.chain_5	3	STRG.15219.2	1
scaffold_4	skipped_exon	4414071	4415344	+	asmbl_41250,asmbl_41255,asmbl_41258	none	STRG.4349.1,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_851,blat.proc3825166.chain_853	5	STRG.4349.4,Trinity_GG_19749_c0_g1_i14,blat.proc3825166.chain_849	3
scaffold_21	alternate_exon	730477	730779	+	asmbl_28291	none	STRG.23764.5,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_971	3	STRG.23764.1	1
scaffold_11	starts_in_intron	3516890	3516890	+	asmbl_5443,asmbl_5444	none	Trinity_GG_24690_c0_g1_i3,Trinity_GG_24690_c0_g1_i4,blat.proc3825170.chain_1977,blat.proc3825170.chain_1979	4	STRG.13485.1,STRG.13485.3,blat.proc3825170.chain_1978	3
scaffold_26	spliced_intron	9943076	9943771	-	asmbl_35805	none	STRG.28526.3	1	STRG.28526.1,STRG.28526.2,Trinity_GG_15942_c0_g1_i1,Trinity_GG_15942_c1_g1_i1,blat.proc3825162.chain_1703,blat.proc3825162.chain_1704	6
scaffold_7	alt_donor	5183702	5183703	-	asmbl_50876	none	STRG.8855.3	1	STRG.8855.1,STRG.8855.2,blat.proc3825152.chain_1305	3
scaffold_4	starts_in_intron	4413983	4413983	+	asmbl_41250,asmbl_41260	none	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_844,blat.proc3825166.chain_853	3	STRG.4349.1,STRG.4349.4,blat.proc3825166.chain_841,blat.proc3825166.chain_851	4
scaffold_15	alt_acceptor	14889516	14889517	+	asmbl_15708	none	blat.proc3825172.chain_3434	1	STRG.18902.1,STRG.18902.2,Trinity_GG_27623_c0_g1_i3,blat.proc3825172.chain_3432,blat.proc3825172.chain_3435	5
scaffold_22	spliced_intron	4278389	4278555	-	asmbl_29235	none	STRG.24843.2	1	STRG.24843.1,Trinity_GG_13898_c0_g1_i1,blat.proc3825160.chain_2048	3
scaffold_16	ends_in_intron	7949779	7949779	-	asmbl_17210	none	blat.proc3825158.chain_588	1	STRG.19438.1,STRG.19438.2,blat.proc3825158.chain_587	3
scaffold_1	alt_donor	12754534	12754535	+	asmbl_2251	none	STRG.896.3,Trinity_GG_17878_c0_g1_i3,blat.proc3825164.chain_1093	3	STRG.896.2,blat.proc3825164.chain_1095	2
scaffold_17	spliced_intron	7006596	7009068	-	asmbl_18018,asmbl_18020	none	STRG.20364.1,blat.proc3825158.chain_1423	2	blat.proc3825158.chain_1421	1
scaffold_16	spliced_intron	1237437	1237543	-	asmbl_16928,asmbl_16930,asmbl_16931	none	STRG.19083.1,blat.proc3825158.chain_219,blat.proc3825158.chain_220,blat.proc3825158.chain_221	4	blat.proc3825158.chain_218	1
scaffold_16	alt_donor	9204486	9204487	-	asmbl_17271	none	blat.proc3825158.chain_645	1	STRG.19522.1,blat.proc3825158.chain_644	2
scaffold_25	retained_intron	1903565	1903665	-	asmbl_34054	none	STRG.27201.1	1	STRG.27201.2	1
scaffold_13	spliced_intron	2569792	2570318	+	asmbl_10624,asmbl_10625,asmbl_10626,asmbl_10627,asmbl_10628,asmbl_10629	none	STRG.15563.1,STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_323,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_327	9	STRG.15563.2,Trinity_GG_25871_c0_g1_i4,Trinity_GG_25871_c1_g1_i1,blat.proc3825172.chain_326,blat.proc3825172.chain_328	5
scaffold_9	skipped_exon	6741220	6742496	-	asmbl_55072	none	STRG.11188.1,blat.proc3825152.chain_3417	2	STRG.11188.2,blat.proc3825152.chain_3414	2
scaffold_28	alt_donor	2932961	2932962	-	asmbl_38112	none	STRG.29489.2	1	STRG.29489.1	1
scaffold_2	alt_acceptor	16291996	16291997	+	asmbl_25118	none	Trinity_GG_18726_c0_g1_i3,blat.proc3825164.chain_2765	2	STRG.2564.1,STRG.2564.2,blat.proc3825164.chain_2763,blat.proc3825164.chain_2764	4
scaffold_3	retained_exon	14514228	14514365	-	asmbl_39387	none	STRG.3791.1	1	STRG.3791.2	1
scaffold_16	alternate_exon	1249424	1249936	-	asmbl_16934	none	Trinity_GG_10709_c1_g1_i1,blat.proc3825158.chain_227	2	STRG.19087.1,STRG.19087.2,STRG.19087.4,blat.proc3825158.chain_222,blat.proc3825158.chain_224,blat.proc3825158.chain_225,blat.proc3825158.chain_226	7
scaffold_10	ends_in_intron	8328578	8328578	-	asmbl_4578	none	blat.proc3825154.chain_1191,blat.proc3825154.chain_1193	2	blat.proc3825154.chain_1192	1
scaffold_7	starts_in_intron	17808113	17808113	+	asmbl_50500	none	blat.proc3825168.chain_2136	1	STRG.9628.1,blat.proc3825168.chain_2133,blat.proc3825168.chain_2134	3
scaffold_7	alt_donor	13197489	13197490	-	asmbl_51299	none	blat.proc3825152.chain_1787	1	STRG.9431.1,blat.proc3825152.chain_1783,blat.proc3825152.chain_1785,blat.proc3825152.chain_1788	4
scaffold_2	alt_acceptor	7469617	7469618	-	asmbl_23263	none	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063	5
scaffold_19	retained_exon	13173553	13173662	+	asmbl_21865,asmbl_21868	none	STRG.22641.1,blat.proc3825174.chain_3604,blat.proc3825174.chain_3605	3	Trinity_GG_29797_c0_g1_i3,blat.proc3825174.chain_3602	2
scaffold_2	retained_intron	13052907	13053021	+	asmbl_24807,asmbl_24810	none	STRG.2330.1,Trinity_GG_18599_c1_g1_i3,blat.proc3825164.chain_2478,blat.proc3825164.chain_2479	4	STRG.2330.2,blat.proc3825164.chain_2481	2
scaffold_13	alt_acceptor	12253533	12253534	+	asmbl_11352	none	blat.proc3825172.chain_1113	1	STRG.16359.3,Trinity_GG_26285_c0_g1_i1,blat.proc3825172.chain_1114	3
scaffold_2	alt_acceptor	13995192	13995193	+	asmbl_24862,asmbl_24863	none	STRG.2397.1,STRG.2397.2	2	STRG.2397.3	1
scaffold_1	starts_in_intron	16735104	16735104	+	asmbl_2502	none	Trinity_GG_17957_c0_g1_i3,blat.proc3825164.chain_1254	2	STRG.1176.1,STRG.1176.2,blat.proc3825164.chain_1253,blat.proc3825164.chain_1255	4
scaffold_6	ends_in_intron	13169830	13169830	-	asmbl_48886	none	Trinity_GG_4590_c0_g1_i10,blat.proc3825152.chain_473	2	STRG.8074.1,blat.proc3825152.chain_470,blat.proc3825152.chain_472,blat.proc3825152.chain_475,blat.proc3825152.chain_476	5
scaffold_14	alt_acceptor	15724877	15724878	-	asmbl_13743,asmbl_13744	none	STRG.17813.2,STRG.17813.3	2	STRG.17813.1,blat.proc3825156.chain_2625	2
scaffold_1	alt_acceptor	13884634	13884635	-	asmbl_852	none	STRG.996.1,blat.proc3825148.chain_1004	2	STRG.996.3,blat.proc3825148.chain_1003,blat.proc3825148.chain_1007	3
scaffold_5	retained_exon	15894284	15894311	+	asmbl_46028,asmbl_46031	none	STRG.6778.3,STRG.6778.4,blat.proc3825166.chain_2867	3	STRG.6778.1,STRG.6778.2,blat.proc3825166.chain_2866	3
scaffold_9	alternate_exon	6740695	6743792	-	asmbl_55072,asmbl_55075,asmbl_55076	none	STRG.11188.1,STRG.11188.2,blat.proc3825152.chain_3414,blat.proc3825152.chain_3417	4	STRG.11188.3,blat.proc3825152.chain_3416	2
scaffold_19	starts_in_intron	13233911	13233911	-	asmbl_22624	none	blat.proc3825158.chain_3424	1	STRG.22653.1,blat.proc3825158.chain_3425	2
scaffold_16	ends_in_intron	14607313	14607313	-	asmbl_17478,asmbl_17479	none	Trinity_GG_11148_c0_g1_i2,blat.proc3825158.chain_913,blat.proc3825158.chain_914	3	STRG.19858.3	1
scaffold_5	alt_acceptor	14680357	14680358	+	asmbl_45956	none	Trinity_GG_20943_c0_g1_i2,blat.proc3825166.chain_2839	2	STRG.6672.2,Trinity_GG_20943_c0_g1_i1,blat.proc3825166.chain_2837	3
scaffold_6	starts_in_intron	3065054	3065054	+	asmbl_46808	none	STRG.7321.3,Trinity_GG_21336_c1_g1_i1,blat.proc3825166.chain_3515	3	STRG.7321.1,STRG.7321.2,blat.proc3825166.chain_3512,blat.proc3825166.chain_3513	4
scaffold_16	ends_in_intron	8035360	8035360	+	asmbl_16366	none	STRG.19440.1	1	Trinity_GG_27952_c0_g1_i2,blat.proc3825174.chain_346	2
scaffold_4	spliced_intron	4120774	4120939	-	asmbl_42496,asmbl_42499,asmbl_42500	none	STRG.4329.1,STRG.4329.2,STRG.4329.3,blat.proc3825150.chain_593	4	Trinity_GG_2440_c0_g1_i3,blat.proc3825150.chain_594,blat.proc3825150.chain_595	3
scaffold_3	starts_in_intron	16077046	16077046	-	asmbl_39479	none	blat.proc3825150.chain_6	1	STRG.3896.1,STRG.3896.2,STRG.3896.3,STRG.3896.4,blat.proc3825150.chain_7,blat.proc3825150.chain_8	6
scaffold_14	alt_donor	13601232	13601233	+	asmbl_12487,asmbl_12488	none	blat.proc3825172.chain_2301,blat.proc3825172.chain_2302	2	STRG.17648.1,STRG.17648.2	2
scaffold_15	retained_intron	15409801	15410185	+	asmbl_15771	none	STRG.18930.4,blat.proc3825172.chain_3591	2	STRG.18930.3,blat.proc3825172.chain_3586	2
scaffold_13	alt_acceptor	9609083	9609084	+	asmbl_11212	none	STRG.16227.2	1	STRG.16227.1,blat.proc3825172.chain_1038,blat.proc3825172.chain_1039,blat.proc3825172.chain_1041,blat.proc3825172.chain_1042	5
scaffold_18	spliced_intron	2835065	2835573	+	asmbl_20425	none	STRG.21142.5,blat.proc3825174.chain_2048	2	Trinity_GG_28933_c0_g1_i5,blat.proc3825174.chain_2054	2
scaffold_5	retained_intron	5061484	5061828	+	asmbl_45338,asmbl_45339	none	STRG.5963.1,Trinity_GG_20579_c0_g1_i2,Trinity_GG_20579_c0_g1_i3,blat.proc3825166.chain_2190,blat.proc3825166.chain_2191	5	STRG.5963.2,STRG.5963.3,STRG.5963.4,blat.proc3825166.chain_2192	4
scaffold_17	alt_acceptor	13196233	13196234	-	asmbl_18361	none	STRG.20817.1,blat.proc3825158.chain_1830	2	STRG.20817.2,STRG.20817.3,blat.proc3825158.chain_1826,blat.proc3825158.chain_1827,blat.proc3825158.chain_1829	5
scaffold_17	spliced_intron	1512991	1513501	-	asmbl_17719	none	STRG.19991.1,blat.proc3825158.chain_1056	2	STRG.19991.2,blat.proc3825158.chain_1057	2
scaffold_18	alternate_exon	4071278	4071384	-	asmbl_19789	none	STRG.21204.1	1	STRG.21204.3	1
scaffold_28	alternate_exon	5634414	5635855	-	asmbl_38307,asmbl_38309,asmbl_38312	none	STRG.29706.1,blat.proc3825162.chain_2855,blat.proc3825162.chain_2856,blat.proc3825162.chain_2859	4	STRG.29706.2,STRG.29706.3,STRG.29706.4,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854	5
scaffold_18	alt_donor	7631645	7631646	-	asmbl_19966	none	STRG.21463.3	1	STRG.21463.2,STRG.21463.4,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2391,blat.proc3825158.chain_2392,blat.proc3825158.chain_2393,blat.proc3825158.chain_2396	7
scaffold_2	ends_in_intron	17839693	17839693	-	asmbl_23756	none	Trinity_GG_1404_c0_g1_i4,blat.proc3825148.chain_2522	2	STRG.2679.1,blat.proc3825148.chain_2520	2
scaffold_22	retained_intron	6130130	6130241	+	asmbl_30098,asmbl_30101,asmbl_30106	none	STRG.24968.6,Trinity_GG_31147_c0_g1_i1,blat.proc3825176.chain_2121,blat.proc3825176.chain_2122	4	STRG.24968.1,STRG.24968.4,blat.proc3825176.chain_2118,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120	5
scaffold_6	alternate_exon	1350225	1351218	-	asmbl_48096,asmbl_48097	none	STRG.7183.1,STRG.7183.2,blat.proc3825150.chain_3279,blat.proc3825150.chain_3280	4	STRG.7183.3	1
scaffold_8	retained_intron	4287919	4288179	+	asmbl_52827	none	STRG.9909.1,Trinity_GG_22831_c0_g2_i1,blat.proc3825168.chain_2462,blat.proc3825168.chain_2463	4	STRG.9909.2	1
scaffold_5	alternate_exon	2601797	2608392	+	asmbl_45190	none	blat.proc3825166.chain_2013	1	STRG.5788.2,Trinity_GG_20472_c1_g1_i1,blat.proc3825166.chain_2015	3
scaffold_1	retained_intron	854980	855087	+	asmbl_1424	none	STRG.43.2,Trinity_GG_17353_c0_g1_i1,blat.proc3825164.chain_147	3	STRG.43.1,STRG.43.3,STRG.43.4,Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142	5
scaffold_4	starts_in_intron	18247381	18247381	-	asmbl_43353	none	blat.proc3825150.chain_1598	1	STRG.5420.1,blat.proc3825150.chain_1597	2
scaffold_10	retained_intron	2752450	2753447	+	asmbl_3007,asmbl_3009	none	STRG.12094.1,Trinity_GG_24049_c0_g1_i3,blat.proc3825170.chain_859,blat.proc3825170.chain_861	4	blat.proc3825170.chain_860	1
scaffold_13	spliced_intron	517905	520155	+	asmbl_10485	none	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3	STRG.15449.1,blat.proc3825172.chain_188	2
scaffold_26	spliced_intron	5043870	5044023	+	asmbl_34943,asmbl_34948,asmbl_34949,asmbl_34950,asmbl_34951,asmbl_34952,asmbl_34954,asmbl_34955,asmbl_34957	none	STRG.28240.1,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1169,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180	10	blat.proc3825176.chain_2465,blat.proc3825178.chain_1166	2
scaffold_13	alt_acceptor	3594017	3594018	+	asmbl_10717	none	STRG.15673.1,Trinity_GG_25923_c0_g1_i1,blat.proc3825172.chain_420	3	STRG.15673.2,Trinity_GG_25923_c0_g1_i3,blat.proc3825172.chain_421	3
scaffold_9	retained_intron	2502740	2502833	-	asmbl_54879	none	STRG.10898.2	1	STRG.10898.1,blat.proc3825152.chain_3100	2
scaffold_87	alt_acceptor	15007	15008	+	asmbl_53726	none	STRG.30146.4	1	STRG.30146.3,STRG.30146.5	2
scaffold_18	starts_in_intron	7166724	7166724	+	asmbl_20709	none	Trinity_GG_29098_c0_g1_i1,blat.proc3825174.chain_2372	2	STRG.21415.1,Trinity_GG_29098_c0_g1_i2,blat.proc3825174.chain_2371	3
scaffold_17	spliced_intron	12142249	12142794	+	asmbl_19267	none	STRG.20751.2,blat.proc3825174.chain_1641	2	STRG.20751.1,Trinity_GG_28698_c0_g1_i1,blat.proc3825174.chain_1640	3
scaffold_1	skipped_exon	3146137	3146608	-	asmbl_136	none	STRG.197.2,blat.proc3825148.chain_174	2	STRG.197.1,blat.proc3825148.chain_173	2
scaffold_9	starts_in_intron	11831597	11831597	-	asmbl_55319	none	STRG.11499.2	1	STRG.11499.1	1
scaffold_13	retained_intron	5506444	5506736	+	asmbl_10858	none	STRG.15845.1,Trinity_GG_25977_c0_g1_i4,blat.proc3825172.chain_515	3	STRG.15845.2,STRG.15845.3,STRG.15845.4,Trinity_GG_25977_c0_g1_i1,Trinity_GG_25977_c0_g1_i2,Trinity_GG_25977_c0_g1_i3,blat.proc3825172.chain_513,blat.proc3825172.chain_514,blat.proc3825172.chain_516	9
scaffold_6	ends_in_intron	5930530	5930530	+	asmbl_46984	none	blat.proc3825166.chain_3728	1	STRG.7543.1,STRG.7543.2,blat.proc3825166.chain_3725,blat.proc3825166.chain_3726	4
scaffold_5	retained_intron	17210337	17210461	-	asmbl_44798,asmbl_44800	none	STRG.6894.2,blat.proc3825150.chain_3042	2	STRG.6894.1,blat.proc3825150.chain_3039,blat.proc3825150.chain_3040,blat.proc3825150.chain_3041,blat.proc3825150.chain_3043	5
scaffold_6	starts_in_intron	3573223	3573223	-	asmbl_48274	none	blat.proc3825150.chain_3496	1	STRG.7370.1,blat.proc3825150.chain_3497	2
scaffold_14	skipped_exon	1590384	1591852	-	asmbl_12894,asmbl_12895,asmbl_12898	none	STRG.16799.1,STRG.16799.2,blat.proc3825156.chain_1564,blat.proc3825156.chain_1565,blat.proc3825156.chain_1566	5	STRG.16799.4	1
scaffold_21	retained_intron	1053818	1053982	-	asmbl_27377,asmbl_27378,asmbl_27381,asmbl_27382	none	STRG.23787.3,STRG.23787.4,Trinity_GG_13262_c0_g1_i1,Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_925,blat.proc3825160.chain_926	6	STRG.23787.1,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	3
scaffold_21	alternate_exon	251715	254300	-	asmbl_27288,asmbl_27294,asmbl_27295,asmbl_27296,asmbl_27297	none	STRG.23725.1,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806	5	STRG.23725.2,STRG.23725.3,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_807,blat.proc3825160.chain_809	6
scaffold_3	spliced_intron	7287291	7287439	-	asmbl_38961,asmbl_38962,asmbl_38963	none	STRG.3330.1,STRG.3330.2,STRG.3330.3,blat.proc3825148.chain_3215,blat.proc3825148.chain_3216	5	STRG.3330.4,Trinity_GG_1803_c0_g1_i4,blat.proc3825148.chain_3213	3
scaffold_1	spliced_intron	11068679	11068764	+	asmbl_2057	none	STRG.725.2	1	STRG.725.1,Trinity_GG_17736_c0_g1_i2,blat.proc3825164.chain_812	3
scaffold_5	spliced_intron	10536961	10538269	-	asmbl_44363,asmbl_44367,asmbl_44368	none	STRG.6340.3,Trinity_GG_3563_c0_g1_i4,Trinity_GG_3563_c0_g1_i7,blat.proc3825150.chain_2535	4	STRG.6340.1,STRG.6340.4,blat.proc3825150.chain_2536,blat.proc3825150.chain_2537,blat.proc3825150.chain_2538	5
scaffold_4	alt_donor	16871829	16871830	-	asmbl_43229	none	STRG.5273.4	1	STRG.5273.1,STRG.5273.2,STRG.5273.3,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	5
scaffold_4	alternate_exon	16804606	16804692	-	asmbl_43217	none	blat.proc3825150.chain_1430	1	STRG.5268.1,Trinity_GG_2936_c0_g1_i1,blat.proc3825150.chain_1428,blat.proc3825150.chain_1429	4
scaffold_15	alt_donor	15355010	15355011	+	asmbl_15758,asmbl_15760,asmbl_15762	none	STRG.18922.3,Trinity_GG_27686_c0_g1_i7,blat.proc3825172.chain_3561,blat.proc3825172.chain_3563	4	STRG.18922.2,blat.proc3825172.chain_3562,blat.proc3825172.chain_3566	3
scaffold_1	alternate_exon	13720981	13721053	-	asmbl_840	none	STRG.986.2,blat.proc3825148.chain_991	2	STRG.986.1,blat.proc3825148.chain_990	2
scaffold_4	alternate_exon	12832558	12832735	+	asmbl_41763	none	STRG.4925.1,blat.proc3825166.chain_1356	2	STRG.4925.2,Trinity_GG_20061_c0_g1_i1,blat.proc3825166.chain_1355	3
scaffold_7	spliced_intron	13205784	13205988	+	asmbl_50314	none	STRG.9432.1,blat.proc3825168.chain_1973	2	STRG.9432.2,blat.proc3825168.chain_1975	2
scaffold_3	alt_donor	10631389	10631390	+	asmbl_40279,asmbl_40283,asmbl_40286,asmbl_40289,asmbl_40290	none	STRG.3513.1,STRG.3513.2,STRG.3513.4,STRG.3513.5,STRG.3513.6,blat.proc3825164.chain_3684,blat.proc3825164.chain_3687,blat.proc3825164.chain_3689	8	STRG.3513.3,STRG.3513.7,blat.proc3825164.chain_3682,blat.proc3825164.chain_3686,blat.proc3825164.chain_3688,blat.proc3825164.chain_3691	6
scaffold_9	alt_acceptor	11812441	11812442	-	asmbl_55312	none	STRG.11497.1,blat.proc3825152.chain_3703	2	STRG.11497.2,blat.proc3825152.chain_3704	2
scaffold_16	alt_acceptor	1801005	1801006	-	asmbl_16955	none	STRG.19106.2	1	STRG.19106.1,blat.proc3825158.chain_253	2
scaffold_12	alt_donor	10618268	10618269	-	asmbl_8767	none	STRG.15045.2	1	STRG.15045.1,STRG.15045.3,blat.proc3825154.chain_3499	3
scaffold_7	alt_donor	13513464	13513465	+	asmbl_50355	none	STRG.9454.1,Trinity_GG_22543_c0_g1_i1,blat.proc3825168.chain_1931	3	STRG.9454.2,Trinity_GG_22543_c0_g1_i2,blat.proc3825168.chain_1932	3
scaffold_18	retained_exon	3916302	3916386	-	asmbl_19785	none	STRG.21203.5	1	STRG.21203.4	1
scaffold_2	alternate_exon	11783279	11783318	+	asmbl_24770	none	Trinity_GG_18584_c0_g1_i2,blat.proc3825164.chain_2447	2	STRG.2278.1,blat.proc3825164.chain_2448	2
scaffold_13	starts_in_intron	16163839	16163839	-	asmbl_10271	none	Trinity_GG_9281_c0_g1_i1	1	STRG.16656.1,blat.proc3825156.chain_1411	2
scaffold_12	skipped_exon	2669286	2670699	+	asmbl_7512	none	STRG.14514.2	1	STRG.14514.1	1
scaffold_15	alternate_exon	9639424	9640416	-	asmbl_14390	none	Trinity_GG_10347_c4_g1_i1,blat.proc3825156.chain_3249,blat.proc3825156.chain_3261	3	Trinity_GG_10347_c2_g1_i7	1
scaffold_1	spliced_intron	18487756	18487955	-	asmbl_1107,asmbl_1108,asmbl_1109,asmbl_1111,asmbl_1112,asmbl_1113,asmbl_1116,asmbl_1117	none	STRG.1298.2,STRG.1298.3,STRG.1298.4,STRG.1298.6,STRG.1298.7,STRG.1298.8,blat.proc3825148.chain_1318,blat.proc3825148.chain_1319,blat.proc3825148.chain_1320,blat.proc3825148.chain_1321,blat.proc3825148.chain_1322	11	Trinity_GG_709_c0_g1_i3,blat.proc3825148.chain_1317	2
scaffold_16	retained_intron	5394585	5394936	+	asmbl_16214	none	blat.proc3825174.chain_183	1	STRG.19288.1,Trinity_GG_27867_c0_g1_i3,blat.proc3825174.chain_180,blat.proc3825174.chain_181	4
scaffold_7	skipped_exon	12369012	12370152	+	asmbl_50247,asmbl_50252	none	STRG.9336.1,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878	3	blat.proc3825168.chain_1875	1
scaffold_2	starts_in_intron	8862029	8862029	+	asmbl_24652	none	STRG.2140.2,blat.proc3825164.chain_2332	2	STRG.2140.1,blat.proc3825164.chain_2333,blat.proc3825164.chain_2335,blat.proc3825164.chain_2336	4
scaffold_15	alt_acceptor	15856432	15856433	+	asmbl_15826,asmbl_15827	none	blat.proc3825172.chain_3572,blat.proc3825172.chain_3573	2	STRG.18973.4,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i7,blat.proc3825172.chain_3568,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575,blat.proc3825172.chain_3577	7
scaffold_16	alt_acceptor	810150	810151	-	asmbl_16907	none	STRG.19064.2,blat.proc3825158.chain_128	2	STRG.19064.1,STRG.19064.3,blat.proc3825158.chain_130	3
scaffold_27	alternate_exon	9334622	9334723	-	asmbl_37130,asmbl_37133	none	STRG.29184.1,blat.proc3825162.chain_2361,blat.proc3825162.chain_2363	3	blat.proc3825162.chain_2362	1
scaffold_6	starts_in_intron	8451276	8451276	+	asmbl_47125	none	Trinity_GG_21542_c0_g1_i1,blat.proc3825168.chain_145	2	STRG.7715.1,blat.proc3825168.chain_144	2
scaffold_17	alt_acceptor	6808732	6808733	+	asmbl_18879	none	STRG.20335.3	1	STRG.20335.1,Trinity_GG_28412_c1_g1_i1,blat.proc3825174.chain_1113	3
scaffold_15	starts_in_intron	15923049	15923049	-	asmbl_14817	none	Trinity_GG_10660_c0_g1_i1,blat.proc3825158.chain_99	2	STRG.18978.1,Trinity_GG_10660_c0_g1_i2,blat.proc3825158.chain_98	3
scaffold_24	retained_intron	7173191	7173356	-	asmbl_33018	none	blat.proc3825162.chain_76	1	STRG.26767.1,STRG.26767.2,blat.proc3825162.chain_74	3
scaffold_3	alt_acceptor	7583131	7583132	+	asmbl_40165	none	STRG.3346.2,blat.proc3825164.chain_3635	2	STRG.3346.1,blat.proc3825164.chain_3634	2
scaffold_20	starts_in_intron	7269010	7269010	+	asmbl_26720	none	Trinity_GG_30171_c0_g1_i1,blat.proc3825176.chain_476	2	STRG.23297.1,STRG.23297.2,STRG.23297.3,blat.proc3825176.chain_475,blat.proc3825176.chain_477	5
scaffold_28	ends_in_intron	3962904	3962904	+	asmbl_37506	none	Trinity_GG_33721_c0_g1_i1,blat.proc3825178.chain_2782	2	STRG.29594.1,blat.proc3825178.chain_2783	2
scaffold_6	spliced_intron	13974353	13974450	+	asmbl_47558	none	STRG.8149.1,Trinity_GG_21793_c0_g1_i3,blat.proc3825168.chain_646	3	blat.proc3825168.chain_645	1
scaffold_40	spliced_intron	26688	26808	+	asmbl_43665	none	STRG.30039.2	1	STRG.30039.1,Trinity_GG_33944_c0_g1_i1,blat.proc3825178.chain_3173	3
scaffold_14	retained_exon	6901924	6901956	+	asmbl_12113	none	STRG.17131.1,blat.proc3825172.chain_1909	2	STRG.17131.2,blat.proc3825172.chain_1908	2
scaffold_16	retained_intron	411662	411800	-	asmbl_16865	none	blat.proc3825158.chain_163	1	STRG.19031.1,blat.proc3825158.chain_164,blat.proc3825158.chain_165	3
scaffold_12	alternate_exon	1972884	1973075	-	asmbl_8309	none	STRG.14484.2	1	STRG.14484.1,blat.proc3825154.chain_2926	2
scaffold_5	spliced_intron	15767010	15767201	+	asmbl_46014,asmbl_46016,asmbl_46017,asmbl_46018,asmbl_46019,asmbl_46020,asmbl_46022,asmbl_46023	none	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2920,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	9	blat.proc3825166.chain_2919	1
scaffold_24	alternate_exon	10484852	10484958	+	asmbl_32570	none	STRG.27019.3,Trinity_GG_32229_c1_g1_i5,blat.proc3825178.chain_202	3	STRG.27019.1,STRG.27019.2,Trinity_GG_32229_c1_g1_i2,Trinity_GG_32229_c1_g1_i3,Trinity_GG_32229_c1_g1_i8,blat.proc3825178.chain_199,blat.proc3825178.chain_201,blat.proc3825178.chain_203	8
scaffold_28	alt_acceptor	5239329	5239330	-	asmbl_38272	none	blat.proc3825162.chain_2782	1	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2785	3
scaffold_20	ends_in_intron	10470856	10470856	-	asmbl_26105	none	blat.proc3825160.chain_638	1	STRG.23584.1,blat.proc3825160.chain_640,blat.proc3825160.chain_641	3
scaffold_3	ends_in_intron	6247399	6247399	-	asmbl_38940	none	blat.proc3825148.chain_3137	1	STRG.3271.2,STRG.3271.5,STRG.3271.6,blat.proc3825148.chain_3138,blat.proc3825148.chain_3139,blat.proc3825148.chain_3141,blat.proc3825148.chain_3143	7
scaffold_11	alt_donor	35543	35544	-	asmbl_6367	none	blat.proc3825154.chain_1816	1	STRG.13237.2	1
scaffold_10	starts_in_intron	6448342	6448342	-	asmbl_4458	none	blat.proc3825154.chain_1038	1	blat.proc3825154.chain_1039,blat.proc3825154.chain_1040	2
scaffold_10	alt_acceptor	9344986	9344987	-	asmbl_4684	none	STRG.12672.1,Trinity_GG_7075_c0_g1_i1,blat.proc3825154.chain_1279	3	STRG.12672.2,STRG.12672.3	2
scaffold_26	retained_intron	9514352	9514514	+	asmbl_35239	none	blat.proc3825178.chain_1625	1	STRG.28502.2	1
scaffold_395	retained_exon	2824	3030	-	asmbl_41076	none	STRG.30306.2,Trinity_GG_17004_c0_g1_i1	2	STRG.30306.1,blat.proc3825162.chain_3431	2
scaffold_2	spliced_intron	2544294	2544550	-	asmbl_22900,asmbl_22902,asmbl_22904	none	STRG.1700.1,STRG.1700.2,blat.proc3825148.chain_1645,blat.proc3825148.chain_1647	4	STRG.1700.3	1
scaffold_6	starts_in_intron	3806913	3806913	+	asmbl_46866	none	Trinity_GG_21370_c0_g1_i6,blat.proc3825166.chain_3602	2	STRG.7383.2,STRG.7383.4,STRG.7383.5	3
scaffold_5	skipped_exon	235742	238214	-	asmbl_43761	none	STRG.5593.3,blat.proc3825150.chain_1832	2	STRG.5593.1,STRG.5593.2	2
scaffold_18	spliced_intron	1895347	1897477	-	asmbl_19659,asmbl_19664	none	STRG.21081.6,STRG.21081.7	2	STRG.21081.3,blat.proc3825158.chain_2010,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2018	5
scaffold_8	alt_acceptor	9378709	9378710	-	asmbl_52025,asmbl_52026,asmbl_52027,asmbl_52030,asmbl_52032	none	STRG.10202.3,STRG.10202.5,STRG.10202.6,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463,blat.proc3825152.chain_2464	6	STRG.10202.4	1
scaffold_6	spliced_intron	1585415	1585461	+	asmbl_46721	none	STRG.7208.1	1	Trinity_GG_21288_c1_g1_i1,blat.proc3825166.chain_3427,blat.proc3825166.chain_3428	3
scaffold_25	retained_exon	3820184	3820299	-	asmbl_34157,asmbl_34158	none	STRG.27339.1,STRG.27339.2,Trinity_GG_15320_c0_g1_i2,blat.proc3825162.chain_701	4	Trinity_GG_15320_c0_g1_i3,blat.proc3825162.chain_699	2
scaffold_11	retained_exon	7048932	7049050	+	asmbl_5644,asmbl_5645,asmbl_5647,asmbl_5650	none	STRG.13733.1,STRG.13733.4,Trinity_GG_24878_c0_g1_i2,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i6,blat.proc3825170.chain_2271,blat.proc3825170.chain_2272,blat.proc3825170.chain_2273	8	STRG.13733.2,STRG.13733.3	2
scaffold_12	skipped_exon	10604821	10607034	+	asmbl_7944	none	STRG.15036.3,blat.proc3825170.chain_3576	2	STRG.15036.1,STRG.15036.2,STRG.15036.4,blat.proc3825170.chain_3579,blat.proc3825170.chain_3580	5
scaffold_15	alternate_exon	6785466	6785659	+	asmbl_15260	none	STRG.18298.2,Trinity_GG_27309_c0_g1_i1,blat.proc3825172.chain_2913	3	STRG.18298.1	1
scaffold_17	skipped_exon	8541916	8543124	+	asmbl_18994	none	blat.proc3825174.chain_1316	1	STRG.20467.1,STRG.20467.2,blat.proc3825174.chain_1315	3
scaffold_14	starts_in_intron	1611626	1611626	+	asmbl_11833	none	Trinity_GG_26566_c0_g2_i3,blat.proc3825172.chain_1590	2	STRG.16804.1,STRG.16804.2,STRG.16804.3,Trinity_GG_26566_c0_g2_i2,blat.proc3825172.chain_1587,blat.proc3825172.chain_1588	6
scaffold_11	spliced_intron	14587104	14587452	+	asmbl_6096,asmbl_6100	none	STRG.14259.2,blat.proc3825170.chain_2699,blat.proc3825170.chain_2702	3	STRG.14259.3,blat.proc3825170.chain_2701	2
scaffold_26	spliced_intron	2809035	2809204	-	asmbl_35446	none	STRG.27975.2	1	STRG.27975.1	1
scaffold_12	alternate_exon	2660558	2660646	+	asmbl_7508	none	blat.proc3825170.chain_3083	1	STRG.14507.1,STRG.14507.3,blat.proc3825170.chain_3085,blat.proc3825170.chain_3088,blat.proc3825170.chain_3089	5
scaffold_14	starts_in_intron	6447513	6447513	-	asmbl_13137	none	Trinity_GG_9602_c0_g1_i5,blat.proc3825156.chain_1919	2	STRG.17095.1,STRG.17095.2,blat.proc3825156.chain_1922	3
scaffold_27	retained_exon	2830195	2830215	+	asmbl_36126	none	STRG.28768.2,blat.proc3825178.chain_1932	2	STRG.28768.1,STRG.28768.3,blat.proc3825178.chain_1934,blat.proc3825178.chain_1936	4
scaffold_7	retained_intron	17808816	17808944	+	asmbl_50498	none	blat.proc3825168.chain_2133	1	STRG.9628.1,blat.proc3825168.chain_2134,blat.proc3825168.chain_2135,blat.proc3825168.chain_2136	4
scaffold_2	alt_acceptor	6518006	6518007	+	asmbl_24477	none	STRG.2022.2	1	STRG.2022.1,STRG.2022.3,STRG.2022.4,STRG.2022.5,Trinity_GG_18449_c0_g1_i2,blat.proc3825164.chain_2143	6
scaffold_9	alternate_exon	3664940	3665928	+	asmbl_53910	none	STRG.10971.4	1	STRG.10971.1,Trinity_GG_23413_c0_g1_i4,blat.proc3825168.chain_3495	3
scaffold_17	alt_donor	12223359	12223360	-	asmbl_18320	none	STRG.20758.1,blat.proc3825158.chain_1699	2	STRG.20758.2	1
scaffold_9	alt_donor	15392561	15392562	+	asmbl_54568,asmbl_54571,asmbl_54572	none	STRG.11741.1,Trinity_GG_23876_c0_g1_i5,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i7,blat.proc3825170.chain_552,blat.proc3825170.chain_553,blat.proc3825170.chain_557	7	Trinity_GG_23876_c0_g1_i3,Trinity_GG_23876_c0_g1_i4,blat.proc3825170.chain_551,blat.proc3825170.chain_554	4
scaffold_9	alt_acceptor	18390505	18390506	+	asmbl_54663	none	STRG.11879.3	1	STRG.11879.1,blat.proc3825170.chain_644	2
scaffold_9	spliced_intron	9706825	9707760	+	asmbl_54231	none	Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_146	2	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_142	3
scaffold_12	ends_in_intron	4624628	4624628	-	asmbl_8428	none	Trinity_GG_8172_c3_g1_i1,blat.proc3825154.chain_3161	2	STRG.14647.1,blat.proc3825154.chain_3158	2
scaffold_8	spliced_intron	11854269	11855193	+	asmbl_53277,asmbl_53279,asmbl_53287,asmbl_53288	none	STRG.10390.2,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3026	4	Trinity_GG_23130_c0_g1_i12,blat.proc3825168.chain_3017	2
scaffold_6	starts_in_intron	7150189	7150189	+	asmbl_47046	none	blat.proc3825168.chain_61	1	STRG.7617.1,blat.proc3825168.chain_60	2
scaffold_19	retained_intron	13140882	13141025	+	asmbl_21852	none	STRG.22633.1,blat.proc3825174.chain_3654	2	STRG.22633.3	1
scaffold_1	alt_donor	1217415	1217416	-	asmbl_48	none	STRG.65.1,Trinity_GG_36_c0_g2_i1,blat.proc3825148.chain_71	3	STRG.65.3,blat.proc3825148.chain_70	2
scaffold_43	retained_intron	829	875	-	asmbl_43694,asmbl_43696	none	STRG.30047.1,STRG.30047.5	2	STRG.30047.6	1
scaffold_6	alt_donor	10400187	10400188	-	asmbl_48700	none	STRG.7880.2,blat.proc3825152.chain_262	2	STRG.7880.1,blat.proc3825152.chain_260	2
scaffold_1	alternate_exon	12168863	12170872	+	asmbl_2186	none	STRG.838.2	1	STRG.838.1	1
scaffold_22	starts_in_intron	8172567	8172567	-	asmbl_29454	none	blat.proc3825160.chain_2271	1	STRG.25167.1,blat.proc3825160.chain_2272	2
scaffold_26	ends_in_intron	3082397	3082397	+	asmbl_34766	none	blat.proc3825178.chain_1035	1	STRG.28002.1,STRG.28002.2,blat.proc3825178.chain_1034	3
scaffold_17	starts_in_intron	9940293	9940293	+	asmbl_19129,asmbl_19133	none	Trinity_GG_28597_c0_g1_i2,blat.proc3825174.chain_1469,blat.proc3825174.chain_1472	3	STRG.20612.1,blat.proc3825174.chain_1470,blat.proc3825174.chain_1471	3
scaffold_8	retained_intron	5433999	5434185	+	asmbl_52886	none	blat.proc3825168.chain_2431	1	blat.proc3825168.chain_2430	1
scaffold_2	ends_in_intron	15700940	15700940	+	asmbl_25071	none	Trinity_GG_18721_c0_g1_i2,blat.proc3825164.chain_2756	2	STRG.2526.1,STRG.2526.2,blat.proc3825164.chain_2753,blat.proc3825164.chain_2755	4
scaffold_4	ends_in_intron	1644578	1644578	+	asmbl_41123	none	STRG.4200.1,Trinity_GG_19645_c0_g1_i2,blat.proc3825166.chain_647	3	STRG.4200.2,Trinity_GG_19645_c0_g1_i1,blat.proc3825166.chain_646	3
scaffold_4	alt_donor	13195409	13195410	-	asmbl_42983,asmbl_42984	none	STRG.4963.1,STRG.4963.2,blat.proc3825150.chain_1135,blat.proc3825150.chain_1136	4	STRG.4963.3,blat.proc3825150.chain_1137	2
scaffold_9	alternate_exon	2029701	2029761	-	asmbl_54862	none	STRG.10878.2	1	STRG.10878.1,blat.proc3825152.chain_3142	2
scaffold_11	alt_acceptor	9695665	9695666	-	asmbl_6952,asmbl_6954,asmbl_6955	none	STRG.13992.3,STRG.13992.5,blat.proc3825154.chain_2533,blat.proc3825154.chain_2534	4	STRG.13992.2	1
scaffold_2	alt_acceptor	4501864	4501865	-	asmbl_23078	none	STRG.1880.2	1	STRG.1880.1,blat.proc3825148.chain_1835	2
scaffold_3	alternate_exon	11634191	11641666	+	asmbl_40363	none	STRG.3596.1,Trinity_GG_19343_c1_g1_i2,blat.proc3825166.chain_110,blat.proc3825166.chain_111	4	STRG.3596.4	1
scaffold_5	alternate_exon	4698078	4698597	+	asmbl_45288	none	STRG.5925.4	1	STRG.5925.1,STRG.5925.2,STRG.5925.3,blat.proc3825166.chain_2149,blat.proc3825166.chain_2150	5
scaffold_7	starts_in_intron	10549211	10549211	-	asmbl_51130	none	STRG.9231.2,blat.proc3825152.chain_1587	2	STRG.9231.1,blat.proc3825152.chain_1586	2
scaffold_6	retained_intron	18883925	18883950	-	asmbl_49283	none	STRG.8557.1,Trinity_GG_4878_c0_g1_i1	2	STRG.8557.2	1
scaffold_3	alternate_exon	11640135	11640311	+	asmbl_40366	none	STRG.3596.4	1	STRG.3596.1,blat.proc3825166.chain_109,blat.proc3825166.chain_110	3
scaffold_20	retained_intron	4478711	4479160	-	asmbl_25743	none	blat.proc3825160.chain_170	1	STRG.23127.1,STRG.23127.2,STRG.23127.4,blat.proc3825160.chain_167,blat.proc3825160.chain_168	5
scaffold_28	retained_intron	5014513	5014754	+	asmbl_37558	none	Trinity_GG_33747_c0_g1_i1,blat.proc3825178.chain_2829	2	Trinity_GG_33747_c0_g1_i3,blat.proc3825178.chain_2831	2
scaffold_5	spliced_intron	19351640	19352041	-	asmbl_44899,asmbl_44900	none	STRG.7034.1,STRG.7034.2,blat.proc3825150.chain_3156	3	blat.proc3825150.chain_3157	1
scaffold_7	spliced_intron	13205270	13205387	+	asmbl_50314,asmbl_50316,asmbl_50317	none	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1973,blat.proc3825168.chain_1975	4	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1972,blat.proc3825168.chain_1974	3
scaffold_10	alt_acceptor	8905459	8905460	-	asmbl_4642	none	STRG.12635.3	1	STRG.12635.1,STRG.12635.2,blat.proc3825154.chain_1178	3
scaffold_11	starts_in_intron	16460674	16460674	+	asmbl_6151	none	STRG.14345.2,blat.proc3825170.chain_2852	2	STRG.14345.1	1
scaffold_26	ends_in_intron	5560846	5560846	+	asmbl_35023	none	blat.proc3825178.chain_1305	1	STRG.28267.1,STRG.28267.2,blat.proc3825178.chain_1303	3
scaffold_24	retained_exon	3791306	3791410	+	asmbl_32162	none	STRG.26564.1,blat.proc3825176.chain_3499	2	STRG.26564.2	1
scaffold_6	starts_in_intron	14510353	14510353	+	asmbl_47620	none	Trinity_GG_21845_c0_g1_i1,blat.proc3825168.chain_721	2	STRG.8210.1,STRG.8210.2,Trinity_GG_21845_c0_g1_i2,Trinity_GG_21845_c2_g1_i1,blat.proc3825168.chain_722,blat.proc3825168.chain_724	6
scaffold_6	ends_in_intron	8173251	8173251	-	asmbl_48539,asmbl_48540	none	Trinity_GG_4351_c0_g1_i6,Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_94,blat.proc3825152.chain_95	4	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93	7
scaffold_6	alt_acceptor	2902176	2902177	+	asmbl_46783	none	STRG.7291.4	1	STRG.7291.1,STRG.7291.2,STRG.7291.3,blat.proc3825166.chain_3491,blat.proc3825166.chain_3492	5
scaffold_11	spliced_intron	9832457	9832783	+	asmbl_5906,asmbl_5908,asmbl_5909,asmbl_5911,asmbl_5913	none	STRG.14008.1,STRG.14008.2,STRG.14008.4,STRG.14008.5,Trinity_GG_25038_c0_g1_i10,blat.proc3825170.chain_2556,blat.proc3825170.chain_2557,blat.proc3825170.chain_2563,blat.proc3825170.chain_2564,blat.proc3825170.chain_2565	10	STRG.14008.3,Trinity_GG_25038_c0_g1_i2,blat.proc3825170.chain_2558,blat.proc3825170.chain_2559	4
scaffold_16	alternate_exon	14614851	14615315	-	asmbl_17474,asmbl_17476,asmbl_17479	none	STRG.19858.3,STRG.19858.4,blat.proc3825158.chain_911,blat.proc3825158.chain_914	4	STRG.19858.5,blat.proc3825158.chain_912	2
scaffold_5	starts_in_intron	8746692	8746692	+	asmbl_45568,asmbl_45569	none	blat.proc3825166.chain_2308,blat.proc3825166.chain_2312	2	STRG.6210.2,Trinity_GG_20640_c0_g1_i4,Trinity_GG_20640_c0_g1_i5,blat.proc3825166.chain_2309,blat.proc3825166.chain_2310	5
scaffold_92	retained_intron	7919	8075	+	asmbl_55829	none	STRG.30133.2	1	STRG.30133.1,blat.proc3825178.chain_3256	2
scaffold_15	starts_in_intron	9870207	9870207	+	asmbl_15429	none	blat.proc3825172.chain_3112	1	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3108,blat.proc3825172.chain_3109	4
scaffold_4	spliced_intron	10924315	10924565	-	asmbl_42871	none	STRG.4815.1,blat.proc3825150.chain_995	2	STRG.4815.2,blat.proc3825150.chain_994	2
scaffold_16	ends_in_intron	1249424	1249424	-	asmbl_16934	none	Trinity_GG_10709_c1_g1_i1,blat.proc3825158.chain_227	2	STRG.19087.3	1
scaffold_12	alternate_exon	6414173	6414226	+	asmbl_7680,asmbl_7681,asmbl_7682	none	STRG.14753.1,STRG.14753.2,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274	4	STRG.14753.3,blat.proc3825170.chain_3275	2
scaffold_1	retained_intron	12953870	12953998	-	asmbl_784,asmbl_785	none	STRG.923.1,STRG.923.2,blat.proc3825148.chain_897,blat.proc3825148.chain_899	4	STRG.923.3,blat.proc3825148.chain_898	2
scaffold_5	spliced_intron	5046593	5047832	+	asmbl_45326,asmbl_45327,asmbl_45328,asmbl_45331	none	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126,blat.proc3825166.chain_2129	5	STRG.5958.4,Trinity_GG_20544_c0_g1_i5,Trinity_GG_20544_c0_g1_i7,blat.proc3825166.chain_2122,blat.proc3825166.chain_2124	5
scaffold_17	alternate_exon	1290063	1291367	-	asmbl_17684	none	blat.proc3825158.chain_976	1	STRG.19964.2	1
scaffold_10	alt_donor	6615815	6615816	+	asmbl_3241	none	blat.proc3825170.chain_1122	1	STRG.12482.1	1
scaffold_11	alt_donor	6714823	6714824	-	asmbl_6735,asmbl_6737	none	STRG.13716.1,STRG.13716.2,blat.proc3825154.chain_2287	3	STRG.13716.4,STRG.13716.5,STRG.13716.6,Trinity_GG_7683_c0_g1_i2,blat.proc3825154.chain_2286,blat.proc3825154.chain_2288	6
scaffold_11	retained_intron	16652240	16652614	+	asmbl_6169	none	blat.proc3825170.chain_2890,blat.proc3825170.chain_2891	2	STRG.14364.1,blat.proc3825170.chain_2892	2
scaffold_27	alt_donor	159052	159053	-	asmbl_36649,asmbl_36651	none	STRG.28549.2,STRG.28549.3	2	STRG.28549.1,blat.proc3825162.chain_1774	2
scaffold_6	alt_acceptor	19076742	19076743	+	asmbl_47869	none	STRG.8575.2,Trinity_GG_21983_c0_g1_i4,blat.proc3825168.chain_950	3	Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_952	2
scaffold_8	starts_in_intron	11852954	11852954	+	asmbl_53285,asmbl_53287	none	Trinity_GG_23130_c0_g1_i12,blat.proc3825168.chain_3017,blat.proc3825168.chain_3026	3	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	7
scaffold_10	alternate_exon	13781834	13782697	-	asmbl_4934	none	STRG.12980.1,blat.proc3825154.chain_1555	2	blat.proc3825154.chain_1556	1
scaffold_19	retained_intron	11578071	11578294	-	asmbl_22427	none	STRG.22501.1,blat.proc3825158.chain_3274	2	STRG.22501.2	1
scaffold_25	starts_in_intron	8484437	8484437	-	asmbl_34446	none	blat.proc3825162.chain_996	1	STRG.27681.1,STRG.27681.2,blat.proc3825162.chain_995	3
scaffold_17	alt_donor	2565156	2565157	+	asmbl_18662,asmbl_18666	none	STRG.20057.1,STRG.20057.2,blat.proc3825174.chain_935	3	STRG.20057.3,blat.proc3825174.chain_934	2
scaffold_10	retained_intron	8897211	8897475	-	asmbl_4620	none	Trinity_GG_7072_c0_g1_i21,blat.proc3825154.chain_1270	2	blat.proc3825154.chain_1265,blat.proc3825154.chain_1268	2
scaffold_2	spliced_intron	898896	899000	+	asmbl_24147,asmbl_24149,asmbl_24150	none	STRG.1569.1,STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721,blat.proc3825164.chain_1722	6	STRG.1569.2,Trinity_GG_18211_c0_g1_i4,Trinity_GG_18211_c0_g1_i5,blat.proc3825164.chain_1718	4
scaffold_2	starts_in_intron	5200933	5200933	+	asmbl_24398	none	Trinity_GG_18384_c0_g1_i4,blat.proc3825164.chain_2049	2	STRG.1940.1,STRG.1940.2,STRG.1940.3,Trinity_GG_18384_c0_g1_i3,blat.proc3825164.chain_2048	5
scaffold_3	skipped_exon	8995392	8998178	-	asmbl_39050,asmbl_39051	none	STRG.3431.1,blat.proc3825148.chain_3319	2	STRG.3431.2,blat.proc3825148.chain_3317,blat.proc3825148.chain_3320	3
scaffold_2	ends_in_intron	13897049	13897049	-	asmbl_23531	none	Trinity_GG_1330_c0_g1_i1,blat.proc3825148.chain_2387	2	STRG.2384.2,blat.proc3825148.chain_2389	2
scaffold_7	starts_in_intron	3745796	3745796	-	asmbl_50814	none	STRG.8772.1,blat.proc3825152.chain_1254	2	STRG.8772.2,blat.proc3825152.chain_1253	2
scaffold_23	alt_donor	1540972	1540973	-	asmbl_30659,asmbl_30660	none	STRG.25632.1,STRG.25632.2,blat.proc3825160.chain_2801,blat.proc3825160.chain_2802	4	STRG.25632.3,blat.proc3825160.chain_2803	2
scaffold_26	alt_donor	2942398	2942399	-	asmbl_35454	none	STRG.27981.2	1	STRG.27981.1,STRG.27981.3	2
scaffold_13	starts_in_intron	13235751	13235751	+	asmbl_11374	none	blat.proc3825172.chain_1201	1	STRG.16396.1,blat.proc3825172.chain_1200	2
scaffold_5	starts_in_intron	12218076	12218076	-	asmbl_44439	none	Trinity_GG_3615_c0_g1_i3,blat.proc3825150.chain_2623	2	STRG.6456.1,Trinity_GG_3615_c0_g1_i2,blat.proc3825150.chain_2622	3
scaffold_12	alt_donor	16316172	16316173	-	asmbl_9118,asmbl_9121	none	STRG.15386.1,blat.proc3825156.chain_241	2	STRG.15386.2,blat.proc3825156.chain_239	2
scaffold_11	alt_donor	12410265	12410266	-	asmbl_7087	none	STRG.14158.3,blat.proc3825154.chain_2693	2	STRG.14158.2	1
scaffold_12	alt_acceptor	8891822	8891823	+	asmbl_7833	none	STRG.14897.3,Trinity_GG_25554_c0_g1_i2,blat.proc3825170.chain_3471	3	STRG.14897.1,STRG.14897.2,Trinity_GG_25554_c0_g1_i3,blat.proc3825170.chain_3473	4
scaffold_13	alt_acceptor	3477339	3477340	-	asmbl_9541	none	STRG.15658.1,blat.proc3825156.chain_523	2	STRG.15658.2	1
scaffold_27	starts_in_intron	328435	328435	-	asmbl_36667	none	Trinity_GG_15979_c0_g1_i1,blat.proc3825162.chain_1787	2	STRG.28560.1,Trinity_GG_15979_c0_g1_i4,blat.proc3825162.chain_1786	3
scaffold_13	alternate_exon	9328408	9332962	-	asmbl_10017	none	STRG.16199.1,blat.proc3825156.chain_1041	2	blat.proc3825156.chain_1013	1
scaffold_28	retained_intron	3968426	3968455	+	asmbl_37511	none	STRG.29597.1	1	STRG.29597.2	1
scaffold_4	spliced_intron	19357562	19357800	-	asmbl_43433,asmbl_43434,asmbl_43435,asmbl_43440	none	STRG.5523.1,STRG.5523.2,Trinity_GG_3086_c0_g1_i3,blat.proc3825150.chain_1679,blat.proc3825150.chain_1685,blat.proc3825150.chain_1687	6	blat.proc3825150.chain_1684	1
scaffold_2	retained_exon	10394585	10394676	+	asmbl_24702	none	STRG.2209.2	1	STRG.2209.1	1
scaffold_10	alt_acceptor	9004228	9004229	+	asmbl_3354	none	STRG.12646.3	1	STRG.12646.1,STRG.12646.2,STRG.12646.4,blat.proc3825170.chain_1216	4
scaffold_13	alt_donor	6968168	6968169	-	asmbl_9825	none	blat.proc3825156.chain_818	1	blat.proc3825156.chain_817	1
scaffold_4	retained_intron	9998114	9998655	+	asmbl_41637,asmbl_41639	none	STRG.4766.2,STRG.4766.4,Trinity_GG_19950_c0_g1_i1,blat.proc3825166.chain_1185,blat.proc3825166.chain_1186	5	STRG.4766.1,blat.proc3825166.chain_1184,blat.proc3825166.chain_1187,blat.proc3825166.chain_1188	4
scaffold_15	spliced_intron	15906565	15906850	-	asmbl_14809,asmbl_14813	none	STRG.18975.2,blat.proc3825158.chain_66	2	blat.proc3825158.chain_65,blat.proc3825158.chain_67	2
scaffold_5	spliced_intron	4696342	4696593	+	asmbl_45285	none	blat.proc3825166.chain_2149	1	STRG.5925.1	1
scaffold_20	starts_in_intron	12112022	12112022	+	asmbl_27115	none	Trinity_GG_30409_c0_g1_i3,blat.proc3825176.chain_858	2	STRG.23711.1,STRG.23711.2,Trinity_GG_30409_c0_g1_i1,blat.proc3825176.chain_857,blat.proc3825176.chain_859,blat.proc3825176.chain_860	6
scaffold_14	retained_intron	15565904	15565930	+	asmbl_12622,asmbl_12624	none	STRG.17796.1,STRG.17796.2	2	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	3
scaffold_13	spliced_intron	7085246	7085351	-	asmbl_9849	none	STRG.16012.2	1	blat.proc3825156.chain_979	1
scaffold_17	starts_in_intron	8219598	8219598	+	asmbl_18955,asmbl_18956,asmbl_18957,asmbl_18958	none	blat.proc3825174.chain_1239,blat.proc3825174.chain_1242,blat.proc3825174.chain_1244,blat.proc3825174.chain_1245	4	STRG.20449.1,blat.proc3825174.chain_1248	2
scaffold_1	alternate_exon	5736755	5737218	+	asmbl_1776,asmbl_1777,asmbl_1778	none	blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_530	3	blat.proc3825164.chain_528	1
scaffold_19	spliced_intron	8526	8631	+	asmbl_21167	none	STRG.21816.3	1	STRG.21816.2	1
scaffold_5	spliced_intron	19031567	19031663	-	asmbl_44886	none	STRG.7022.5	1	STRG.7022.6,blat.proc3825150.chain_3129	2
scaffold_23	alternate_exon	2208310	2208346	-	asmbl_30715	none	STRG.25698.4	1	STRG.25698.1	1
scaffold_15	spliced_intron	4964468	4964665	+	asmbl_15176,asmbl_15179,asmbl_15180,asmbl_15183	none	Trinity_GG_27299_c0_g1_i8,Trinity_GG_27299_c0_g1_i9,blat.proc3825172.chain_2890,blat.proc3825172.chain_2892,blat.proc3825172.chain_2893,blat.proc3825172.chain_2895	6	STRG.18207.4	1
scaffold_5	retained_intron	10968500	10969203	+	asmbl_45713	none	STRG.6375.2,blat.proc3825166.chain_2594	2	STRG.6375.1,blat.proc3825166.chain_2593	2
scaffold_5	alt_acceptor	15044005	15044006	-	asmbl_44634,asmbl_44636	none	Trinity_GG_3732_c0_g1_i2,Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2825,blat.proc3825150.chain_2827	4	STRG.6698.2,STRG.6698.3,STRG.6698.4,STRG.6698.5,STRG.6698.6,Trinity_GG_3732_c0_g1_i1,blat.proc3825150.chain_2826	7
scaffold_14	spliced_intron	218317	218775	-	asmbl_12807,asmbl_12809	none	STRG.16718.1,STRG.16718.4,blat.proc3825156.chain_1512	3	STRG.16718.2,STRG.16718.3,blat.proc3825156.chain_1511,blat.proc3825156.chain_1513,blat.proc3825156.chain_1514	5
scaffold_18	alt_acceptor	7520532	7520533	-	asmbl_19954	none	STRG.21448.1	1	STRG.21448.2	1
scaffold_11	spliced_intron	13035748	13036295	-	asmbl_7114	none	STRG.14179.3,blat.proc3825154.chain_2756	2	STRG.14179.2,blat.proc3825154.chain_2758	2
scaffold_13	alternate_exon	1521204	1521269	-	asmbl_9418	none	STRG.15516.4	1	STRG.15516.2,STRG.15516.3,Trinity_GG_8698_c0_g1_i1,Trinity_GG_8698_c0_g1_i5,blat.proc3825156.chain_404,blat.proc3825156.chain_405	6
scaffold_24	alt_acceptor	4281296	4281297	+	asmbl_32177,asmbl_32178	none	STRG.26586.1,STRG.26586.2,blat.proc3825176.chain_3528,blat.proc3825176.chain_3529	4	STRG.26586.3	1
scaffold_13	spliced_intron	7647173	7647583	-	asmbl_9901	none	blat.proc3825156.chain_950	1	STRG.16050.1,Trinity_GG_9025_c0_g1_i1,blat.proc3825156.chain_951	3
scaffold_2	spliced_intron	9790539	9790880	+	asmbl_24685,asmbl_24686,asmbl_24689,asmbl_24690	none	STRG.2185.1,Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2361,blat.proc3825164.chain_2364,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	6	Trinity_GG_18541_c0_g1_i1,blat.proc3825164.chain_2363	2
scaffold_23	retained_intron	5337942	5338313	-	asmbl_30909	none	blat.proc3825160.chain_3101	1	STRG.25911.1,STRG.25911.2,blat.proc3825160.chain_3099,blat.proc3825160.chain_3100,blat.proc3825160.chain_3102	5
scaffold_14	alt_acceptor	15468286	15468287	+	asmbl_12597	none	STRG.17780.2	1	STRG.17780.4	1
scaffold_13	starts_in_intron	362001	362001	-	asmbl_9313	none	blat.proc3825156.chain_301	1	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,STRG.15442.5,Trinity_GG_8663_c0_g1_i10,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g1_i22,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_294,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_297,blat.proc3825156.chain_298,blat.proc3825156.chain_300	17
scaffold_17	alt_donor	8318033	8318034	+	asmbl_18967	none	STRG.20456.6	1	STRG.20456.3,STRG.20456.4,STRG.20456.5,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1203	6
scaffold_14	retained_intron	6938531	6938657	+	asmbl_12120	none	blat.proc3825172.chain_1917	1	STRG.17137.1,blat.proc3825172.chain_1916	2
scaffold_1	alt_donor	13927213	13927214	-	asmbl_860	none	STRG.1000.3,blat.proc3825148.chain_1010	2	STRG.1000.1,STRG.1000.2	2
scaffold_1	spliced_intron	9306095	9306201	+	asmbl_1979,asmbl_1980	none	STRG.628.1,blat.proc3825164.chain_746,blat.proc3825164.chain_747	3	blat.proc3825164.chain_748	1
scaffold_10	retained_intron	11971420	11971467	+	asmbl_3508,asmbl_3510,asmbl_3515	none	STRG.12838.1,STRG.12838.3,STRG.12838.6	3	STRG.12838.2	1
scaffold_4	starts_in_intron	14685249	14685249	-	asmbl_43078	none	STRG.5100.1,blat.proc3825150.chain_1253	2	STRG.5100.2	1
scaffold_26	starts_in_intron	6017219	6017219	+	asmbl_35070	none	STRG.28321.2	1	STRG.28321.1,blat.proc3825178.chain_1376,blat.proc3825178.chain_1377	3
scaffold_27	ends_in_intron	2795593	2795593	+	asmbl_36111,asmbl_36114	none	STRG.28760.2,blat.proc3825178.chain_1914	2	STRG.28760.1,blat.proc3825178.chain_1916,blat.proc3825178.chain_1917	3
scaffold_5	skipped_exon	18818689	18820189	+	asmbl_46292,asmbl_46293	none	STRG.7010.2,STRG.7010.3	2	STRG.7010.1,blat.proc3825166.chain_3170	2
scaffold_19	alt_acceptor	3561159	3561160	+	asmbl_21331	none	STRG.22045.1	1	STRG.22045.3,STRG.22045.4	2
scaffold_12	ends_in_intron	9040992	9040992	+	asmbl_7847,asmbl_7849	none	STRG.14916.1,STRG.14916.3,blat.proc3825170.chain_3492,blat.proc3825170.chain_3493,blat.proc3825170.chain_3494	5	STRG.14916.2,Trinity_GG_25564_c1_g1_i1,blat.proc3825170.chain_3495	3
scaffold_4	starts_in_intron	10856653	10856653	+	asmbl_41675,asmbl_41679	none	STRG.4807.3,Trinity_GG_20013_c0_g2_i1	2	STRG.4807.2	1
scaffold_21	alt_donor	8182169	8182170	+	asmbl_28794	none	STRG.24352.1,blat.proc3825176.chain_1546	2	STRG.24352.2	1
scaffold_22	alt_acceptor	4325466	4325467	-	asmbl_29247	none	STRG.24853.1,blat.proc3825160.chain_2053	2	STRG.24853.2,blat.proc3825160.chain_2052	2
scaffold_16	alt_donor	4911965	4911966	-	asmbl_17083	none	STRG.19268.2	1	STRG.19268.1,Trinity_GG_10809_c0_g1_i3,blat.proc3825158.chain_384	3
scaffold_2	retained_intron	16084074	16084172	-	asmbl_23669	none	blat.proc3825148.chain_2435	1	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2436,blat.proc3825148.chain_2437,blat.proc3825148.chain_2438	5
scaffold_4	spliced_intron	17580414	17580544	+	asmbl_42062	none	STRG.5347.3	1	STRG.5347.4	1
scaffold_21	retained_intron	5536369	5536490	-	asmbl_27672,asmbl_27673	none	STRG.24086.2,Trinity_GG_13445_c0_g1_i9,blat.proc3825160.chain_1274,blat.proc3825160.chain_1277	4	STRG.24086.1,blat.proc3825160.chain_1271,blat.proc3825160.chain_1275	3
scaffold_1	alt_acceptor	22370561	22370562	+	asmbl_2687,asmbl_2691	none	STRG.1491.2,STRG.1491.4	2	STRG.1491.1,STRG.1491.3,STRG.1491.5	3
scaffold_10	ends_in_intron	6071864	6071864	-	asmbl_4424	none	Trinity_GG_6960_c0_g1_i3,blat.proc3825154.chain_1031	2	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033,blat.proc3825154.chain_1034	10
scaffold_13	alt_donor	388177	388178	-	asmbl_9329	none	STRG.15438.1,blat.proc3825156.chain_287	2	STRG.15438.2,blat.proc3825156.chain_284	2
scaffold_6	alternate_exon	14107349	14107497	-	asmbl_48986	none	STRG.8170.2	1	STRG.8170.1	1
scaffold_6	alt_donor	17670897	17670898	+	asmbl_47771,asmbl_47773,asmbl_47775	none	STRG.8462.2,Trinity_GG_21933_c0_g1_i2,Trinity_GG_21933_c0_g1_i5,Trinity_GG_21933_c0_g1_i7,blat.proc3825168.chain_867,blat.proc3825168.chain_869,blat.proc3825168.chain_871	7	STRG.8462.1,blat.proc3825168.chain_870	2
scaffold_21	spliced_intron	3117600	3118195	-	asmbl_27511	none	STRG.23938.2,blat.proc3825160.chain_996	2	STRG.23938.1,Trinity_GG_13300_c0_g1_i3,blat.proc3825160.chain_997	3
scaffold_15	starts_in_intron	11303941	11303941	+	asmbl_15493	none	Trinity_GG_27459_c0_g1_i3,blat.proc3825172.chain_3167	2	STRG.18603.1,blat.proc3825172.chain_3162,blat.proc3825172.chain_3163,blat.proc3825172.chain_3165,blat.proc3825172.chain_3166	5
scaffold_10	alternate_exon	2688167	2688235	-	asmbl_4119	none	STRG.12086.2,blat.proc3825154.chain_614	2	STRG.12086.1,blat.proc3825154.chain_615	2
scaffold_17	alt_donor	9825990	9825991	-	asmbl_18198,asmbl_18199,asmbl_18201,asmbl_18202	none	STRG.20598.1,STRG.20598.3,STRG.20598.5,blat.proc3825158.chain_1555,blat.proc3825158.chain_1557	5	STRG.20598.2,STRG.20598.4,blat.proc3825158.chain_1556,blat.proc3825158.chain_1558	4
scaffold_4	alt_acceptor	16133429	16133430	-	asmbl_43143	none	STRG.5184.3	1	STRG.5184.2,blat.proc3825150.chain_1342	2
scaffold_6	starts_in_intron	14513154	14513154	-	asmbl_49011	none	blat.proc3825152.chain_634	1	STRG.8219.1,blat.proc3825152.chain_633	2
scaffold_7	alt_acceptor	4035759	4035760	+	asmbl_49711,asmbl_49712	none	STRG.8801.1,Trinity_GG_22135_c0_g1_i1,Trinity_GG_22135_c0_g1_i4,blat.proc3825168.chain_1241,blat.proc3825168.chain_1243	5	STRG.8801.2,Trinity_GG_22135_c0_g1_i3,blat.proc3825168.chain_1242	3
scaffold_28	alt_donor	2652832	2652833	+	asmbl_37394,asmbl_37395	none	STRG.29457.1,STRG.29457.2,blat.proc3825178.chain_2671	3	blat.proc3825178.chain_2669,blat.proc3825178.chain_2670	2
scaffold_11	starts_in_intron	323810	323810	-	asmbl_6393	none	STRG.13265.1,Trinity_GG_7422_c0_g1_i1,blat.proc3825154.chain_1837	3	STRG.13265.2,Trinity_GG_7422_c0_g1_i2,blat.proc3825154.chain_1836	3
scaffold_5	alt_acceptor	5058007	5058008	+	asmbl_45333,asmbl_45334	none	STRG.5959.1,STRG.5959.3,blat.proc3825166.chain_2195	3	STRG.5959.2,STRG.5959.4,blat.proc3825166.chain_2197	3
scaffold_13	spliced_intron	16434082	16434150	+	asmbl_11576	none	STRG.16695.3	1	STRG.16695.1,STRG.16695.2,blat.proc3825172.chain_1429	3
scaffold_10	starts_in_intron	13282701	13282701	-	asmbl_4869	none	blat.proc3825154.chain_1548	1	STRG.12922.2,STRG.12922.3	2
scaffold_21	skipped_exon	10004467	10005327	-	asmbl_28000	none	STRG.24463.2,blat.proc3825160.chain_1638	2	STRG.24463.1,blat.proc3825160.chain_1637	2
scaffold_17	skipped_exon	7046365	7049246	+	asmbl_18889	none	STRG.20370.1,blat.proc3825174.chain_1223,blat.proc3825174.chain_1226	3	STRG.20370.3,blat.proc3825174.chain_1225,blat.proc3825174.chain_1227	3
scaffold_963	starts_in_intron	3603	3603	-	asmbl_55853	none	Trinity_GG_17134_c0_g1_i1	1	STRG.30517.1	1
scaffold_2	retained_intron	14623015	14623109	+	asmbl_24964	none	blat.proc3825164.chain_2725	1	STRG.2458.1,blat.proc3825164.chain_2726	2
scaffold_5	retained_intron	5046593	5047832	+	asmbl_45325	none	STRG.5958.4,Trinity_GG_20544_c0_g1_i5,Trinity_GG_20544_c0_g1_i7,blat.proc3825166.chain_2122,blat.proc3825166.chain_2124	5	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126,blat.proc3825166.chain_2129	5
scaffold_13	alt_donor	909428	909429	-	asmbl_9376,asmbl_9380	none	STRG.15470.1,STRG.15470.3,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_271	5	STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_268,blat.proc3825156.chain_272	5
scaffold_14	skipped_exon	11664176	11665506	-	asmbl_13514	none	blat.proc3825156.chain_2310	1	STRG.17511.1,STRG.17511.2,blat.proc3825156.chain_2307,blat.proc3825156.chain_2308,blat.proc3825156.chain_2309	5
scaffold_11	spliced_intron	8600562	8601135	+	asmbl_5806,asmbl_5808,asmbl_5811	none	STRG.13876.1,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2449	6	Trinity_GG_24974_c0_g1_i3,blat.proc3825170.chain_2448	2
scaffold_8	alt_acceptor	9921998	9921999	-	asmbl_52071	none	STRG.10244.2	1	STRG.10244.1,blat.proc3825152.chain_2453	2
scaffold_22	ends_in_intron	4433999	4433999	-	asmbl_29268	none	Trinity_GG_13911_c1_g1_i1,blat.proc3825160.chain_2092	2	Trinity_GG_13911_c0_g1_i2,blat.proc3825160.chain_2090	2
scaffold_13	starts_in_intron	3734307	3734307	+	asmbl_10732	none	STRG.15695.3	1	STRG.15695.1,STRG.15695.2,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_445,blat.proc3825172.chain_446,blat.proc3825172.chain_448	9
scaffold_25	starts_in_intron	6813579	6813579	+	asmbl_33651	none	blat.proc3825178.chain_662	1	STRG.27551.1,blat.proc3825178.chain_663	2
scaffold_21	alt_donor	7325156	7325157	-	asmbl_27798	none	blat.proc3825160.chain_1405	1	STRG.24258.1,blat.proc3825160.chain_1403,blat.proc3825160.chain_1406	3
scaffold_13	alternate_exon	11600010	11603336	+	asmbl_11293,asmbl_11296,asmbl_11297,asmbl_11298	none	blat.proc3825172.chain_1028,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034	4	STRG.16316.4,STRG.16316.5,STRG.16316.6	3
scaffold_3	alt_donor	19901535	19901536	-	asmbl_39679	none	STRG.4108.1,blat.proc3825150.chain_280	2	STRG.4108.2	1
scaffold_12	starts_in_intron	13657364	13657364	-	asmbl_8953	none	blat.proc3825156.chain_44	1	STRG.15224.1,blat.proc3825156.chain_45	2
scaffold_20	alt_acceptor	3036833	3036834	+	asmbl_26515	none	STRG.23039.1,blat.proc3825176.chain_209	2	STRG.23039.2	1
scaffold_21	alt_acceptor	7601223	7601224	+	asmbl_28754	none	STRG.24297.1,blat.proc3825176.chain_1515	2	STRG.24297.2,blat.proc3825176.chain_1516	2
scaffold_4	spliced_intron	19524379	19524448	-	asmbl_43444,asmbl_43446	none	STRG.5538.1,blat.proc3825150.chain_1642,blat.proc3825150.chain_1643	3	blat.proc3825150.chain_1644	1
scaffold_2	alt_acceptor	2845830	2845831	-	asmbl_22929	none	STRG.1724.2	1	STRG.1724.1,blat.proc3825148.chain_1660	2
scaffold_1	alternate_exon	920505	921971	+	asmbl_1440	none	STRG.49.2,Trinity_GG_17320_c0_g1_i4,blat.proc3825164.chain_84	3	STRG.49.4,blat.proc3825164.chain_87	2
scaffold_4	spliced_intron	14648742	14648884	-	asmbl_43061,asmbl_43062,asmbl_43063	none	STRG.5090.1,STRG.5090.2,STRG.5090.3,blat.proc3825150.chain_1237,blat.proc3825150.chain_1238	5	blat.proc3825150.chain_1236	1
scaffold_12	ends_in_intron	4984863	4984863	+	asmbl_7632	none	blat.proc3825170.chain_3141	1	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3139	5
scaffold_2	starts_in_intron	11813782	11813782	+	asmbl_24777	none	Trinity_GG_18591_c0_g1_i2,blat.proc3825164.chain_2465	2	STRG.2284.1,Trinity_GG_18591_c0_g1_i1,blat.proc3825164.chain_2466	3
scaffold_6	spliced_intron	13657677	13658079	-	asmbl_48930	none	blat.proc3825152.chain_525	1	STRG.8106.1,blat.proc3825152.chain_524	2
scaffold_15	alt_donor	14663241	14663242	+	asmbl_15696	none	STRG.18882.2,Trinity_GG_27665_c0_g1_i4,blat.proc3825172.chain_3504	3	STRG.18882.1	1
scaffold_2	alternate_exon	11783844	11785660	+	asmbl_24771	none	STRG.2278.1,blat.proc3825164.chain_2448	2	Trinity_GG_18584_c0_g1_i2,blat.proc3825164.chain_2447	2
scaffold_5	spliced_intron	10853790	10853941	+	asmbl_45699,asmbl_45701,asmbl_45702,asmbl_45703	none	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2523,blat.proc3825166.chain_2525	5	blat.proc3825166.chain_2521	1
scaffold_8	starts_in_intron	16142609	16142609	-	asmbl_52367	none	blat.proc3825152.chain_2832	1	blat.proc3825152.chain_2829,blat.proc3825152.chain_2831	2
scaffold_11	alt_acceptor	15711206	15711207	+	asmbl_6127	none	blat.proc3825170.chain_2837	1	STRG.14313.1,blat.proc3825170.chain_2838	2
scaffold_5	retained_intron	15044032	15044157	-	asmbl_44635	none	Trinity_GG_3732_c0_g1_i1,blat.proc3825150.chain_2826	2	STRG.6698.5	1
scaffold_13	spliced_intron	400473	401576	-	asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9352,asmbl_9354	none	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24	Trinity_GG_8688_c0_g2_i1,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i3,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_367,blat.proc3825156.chain_368,blat.proc3825156.chain_369,blat.proc3825156.chain_370,blat.proc3825156.chain_371	9
scaffold_16	starts_in_intron	4658366	4658366	+	asmbl_16197	none	blat.proc3825174.chain_137	1	STRG.19251.1,STRG.19251.2,blat.proc3825174.chain_136,blat.proc3825174.chain_138	4
scaffold_10	retained_intron	378745	379004	-	asmbl_3945	none	STRG.11922.2,Trinity_GG_6631_c0_g1_i7,blat.proc3825154.chain_458	3	STRG.11922.4,blat.proc3825154.chain_462	2
scaffold_18	alt_donor	8913584	8913585	-	asmbl_20046,asmbl_20047	none	STRG.21558.6,STRG.21558.7,blat.proc3825158.chain_2449	3	STRG.21558.1	1
scaffold_20	alt_acceptor	2113685	2113686	+	asmbl_26472	none	STRG.22951.2	1	STRG.22951.1,blat.proc3825176.chain_146	2
scaffold_7	spliced_intron	1235897	1237950	+	asmbl_49600	none	Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	2	STRG.8637.2	1
scaffold_13	retained_intron	2340633	2341002	+	asmbl_10597	none	STRG.15564.10	1	STRG.15564.2,STRG.15564.4,STRG.15564.5	3
scaffold_1	retained_intron	6019056	6019228	+	asmbl_1819	none	blat.proc3825164.chain_566	1	STRG.408.1,blat.proc3825164.chain_565,blat.proc3825164.chain_567	3
scaffold_7	starts_in_intron	13865668	13865668	-	asmbl_51323	none	Trinity_GG_5315_c3_g1_i1,blat.proc3825152.chain_1827	2	STRG.9480.1,STRG.9480.2,STRG.9480.4,STRG.9480.5,blat.proc3825152.chain_1822,blat.proc3825152.chain_1823	6
scaffold_11	spliced_intron	9832014	9832321	+	asmbl_5908	none	STRG.14008.4,Trinity_GG_25038_c0_g1_i10,blat.proc3825170.chain_2563	3	STRG.14008.5,Trinity_GG_25038_c0_g1_i2,blat.proc3825170.chain_2558,blat.proc3825170.chain_2559,blat.proc3825170.chain_2564	5
scaffold_1	alt_acceptor	9267739	9267740	-	asmbl_531	none	STRG.625.1	1	STRG.625.2,blat.proc3825148.chain_560	2
scaffold_21	alt_acceptor	7519874	7519875	+	asmbl_28745	none	STRG.24289.2,Trinity_GG_30770_c0_g1_i2,blat.proc3825176.chain_1501	3	STRG.24289.1,blat.proc3825176.chain_1502	2
scaffold_24	starts_in_intron	6910096	6910096	-	asmbl_33000	none	blat.proc3825162.chain_58	1	STRG.26748.1	1
scaffold_21	spliced_intron	7928625	7928725	+	asmbl_28772	none	STRG.24330.4,blat.proc3825176.chain_1543	2	STRG.24330.5	1
scaffold_27	starts_in_intron	3747728	3747728	+	asmbl_36220	none	Trinity_GG_33272_c0_g1_i2,blat.proc3825178.chain_2005	2	STRG.28836.1	1
scaffold_28	spliced_intron	2811643	2811903	-	asmbl_38086,asmbl_38087,asmbl_38088,asmbl_38092,asmbl_38093	none	STRG.29471.1,STRG.29471.2,STRG.29471.3,blat.proc3825162.chain_2598,blat.proc3825162.chain_2599	5	STRG.29471.4	1
scaffold_1	spliced_intron	8643305	8643562	-	asmbl_466,asmbl_468,asmbl_471,asmbl_472	none	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_585,blat.proc3825148.chain_586	5	blat.proc3825148.chain_579,blat.proc3825148.chain_581,blat.proc3825148.chain_584	3
scaffold_5	spliced_intron	10314754	10314836	+	asmbl_45675	none	STRG.6331.1,blat.proc3825166.chain_2553	2	Trinity_GG_20769_c0_g1_i1,Trinity_GG_20769_c0_g1_i2,blat.proc3825166.chain_2551,blat.proc3825166.chain_2552	4
scaffold_10	skipped_exon	1491398	1494142	-	asmbl_4064	none	STRG.12025.2,blat.proc3825154.chain_512	2	STRG.12025.1,STRG.12025.3,blat.proc3825154.chain_513	3
scaffold_3	alt_donor	19407472	19407473	-	asmbl_39647,asmbl_39648,asmbl_39652	none	STRG.4086.1,STRG.4086.3,STRG.4086.4,blat.proc3825150.chain_250,blat.proc3825150.chain_253	5	STRG.4086.2	1
scaffold_15	starts_in_intron	13257897	13257897	-	asmbl_14624	none	blat.proc3825156.chain_3569	1	STRG.18767.1,blat.proc3825156.chain_3570,blat.proc3825156.chain_3572	3
scaffold_10	ends_in_intron	16834281	16834281	-	asmbl_5014	none	blat.proc3825154.chain_1720	1	STRG.13129.2	1
scaffold_16	starts_in_intron	11956185	11956185	+	asmbl_16622	none	Trinity_GG_28085_c0_g1_i2,blat.proc3825174.chain_583	2	STRG.19724.1,Trinity_GG_28085_c0_g1_i1,blat.proc3825174.chain_582	3
scaffold_14	spliced_intron	1094470	1094586	+	asmbl_11801	none	STRG.16769.2,blat.proc3825172.chain_1480	2	STRG.16769.3,blat.proc3825172.chain_1477	2
scaffold_5	skipped_exon	19029102	19031503	-	asmbl_44885	none	STRG.7022.4	1	blat.proc3825150.chain_3133	1
scaffold_6	alt_acceptor	7516477	7516478	-	asmbl_48497,asmbl_48500,asmbl_48502	none	STRG.7655.1,STRG.7655.4,blat.proc3825152.chain_11,blat.proc3825152.chain_13	4	STRG.7655.3,STRG.7655.5,blat.proc3825152.chain_14	3
scaffold_6	starts_in_intron	11498995	11498995	+	asmbl_47337	none	Trinity_GG_21639_c0_g1_i1,blat.proc3825168.chain_337	2	STRG.7947.1,Trinity_GG_21639_c0_g3_i1,blat.proc3825168.chain_340	3
scaffold_6	alt_donor	13229076	13229077	+	asmbl_47503,asmbl_47505,asmbl_47509	none	STRG.8084.1,blat.proc3825168.chain_573,blat.proc3825168.chain_574,blat.proc3825168.chain_576	4	STRG.8084.4,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_575	4
scaffold_1	alt_donor	20135210	20135211	-	asmbl_1170	none	STRG.1386.5	1	STRG.1386.7,blat.proc3825148.chain_1398	2
scaffold_13	spliced_intron	398875	400388	-	asmbl_9339	none	Trinity_GG_8688_c0_g2_i3,blat.proc3825156.chain_371	2	Trinity_GG_8688_c0_g2_i1,Trinity_GG_8688_c0_g2_i2,blat.proc3825156.chain_367,blat.proc3825156.chain_370	4
scaffold_21	alternate_exon	835280	835312	+	asmbl_28314	none	STRG.23777.3	1	STRG.23777.1,blat.proc3825176.chain_909,blat.proc3825176.chain_910,blat.proc3825176.chain_911,blat.proc3825176.chain_912	5
scaffold_17	starts_in_intron	11262763	11262763	+	asmbl_19211	none	Trinity_GG_28649_c0_g1_i1,blat.proc3825174.chain_1568	2	STRG.20682.1	1
scaffold_1	skipped_exon	43470	45446	-	asmbl_3	none	STRG.11.3	1	STRG.11.1,blat.proc3825148.chain_63,blat.proc3825148.chain_64	3
scaffold_17	alt_acceptor	7009179	7009180	-	asmbl_18020	none	blat.proc3825158.chain_1423	1	STRG.20364.1	1
scaffold_21	retained_intron	7008589	7008736	-	asmbl_27773	none	blat.proc3825160.chain_1390	1	blat.proc3825160.chain_1391	1
scaffold_8	retained_exon	16506570	16506689	-	asmbl_52413	none	blat.proc3825152.chain_2931	1	STRG.10629.5	1
scaffold_2	retained_exon	2881881	2881925	-	asmbl_22930,asmbl_22935,asmbl_22939,asmbl_22943	none	STRG.1736.3,blat.proc3825148.chain_1668,blat.proc3825148.chain_1670,blat.proc3825148.chain_1673,blat.proc3825148.chain_1674	5	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1667,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672	5
scaffold_4	retained_intron	5772794	5774235	-	asmbl_42639	none	STRG.4471.2,blat.proc3825150.chain_721	2	STRG.4471.1,Trinity_GG_2508_c0_g1_i1,blat.proc3825150.chain_722	3
scaffold_6	alt_acceptor	600723	600724	-	asmbl_48047,asmbl_48050,asmbl_48051	none	STRG.7125.1,STRG.7125.2,STRG.7125.4,blat.proc3825150.chain_3224	4	STRG.7125.3,STRG.7125.5,blat.proc3825150.chain_3225	3
scaffold_8	starts_in_intron	18423676	18423676	+	asmbl_53547	none	STRG.10739.2	1	STRG.10739.1	1
scaffold_25	spliced_intron	3084205	3084650	-	asmbl_34093	none	STRG.27251.3	1	STRG.27251.4,Trinity_GG_15234_c0_g1_i6,blat.proc3825162.chain_558	3
scaffold_18	spliced_intron	9164378	9164478	+	asmbl_20875	none	STRG.21560.1,Trinity_GG_29221_c0_g1_i2,blat.proc3825174.chain_2592	3	Trinity_GG_29221_c0_g1_i1,blat.proc3825174.chain_2593	2
scaffold_13	alt_acceptor	11850503	11850504	-	asmbl_10108	none	STRG.16319.1	1	STRG.16319.2	1
scaffold_14	alternate_exon	2249788	2249830	-	asmbl_12925,asmbl_12927	none	STRG.16830.2,Trinity_GG_9429_c0_g1_i2,blat.proc3825156.chain_1651	3	STRG.16830.1,Trinity_GG_9429_c0_g1_i1,Trinity_GG_9429_c0_g1_i3,blat.proc3825156.chain_1650,blat.proc3825156.chain_1652	5
scaffold_9	starts_in_intron	5311505	5311505	-	asmbl_55004	none	blat.proc3825152.chain_3360	1	STRG.11109.1,blat.proc3825152.chain_3361	2
scaffold_5	starts_in_intron	19029999	19029999	-	asmbl_44889	none	STRG.7022.1	1	blat.proc3825150.chain_3133	1
scaffold_14	alt_acceptor	1375462	1375463	-	asmbl_12879	none	blat.proc3825156.chain_1626	1	STRG.16791.1,STRG.16791.2,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625	4
scaffold_12	starts_in_intron	14990148	14990148	-	asmbl_9027	none	Trinity_GG_8566_c0_g1_i6,blat.proc3825156.chain_115	2	STRG.15298.1,STRG.15298.2,Trinity_GG_8566_c0_g1_i1,Trinity_GG_8566_c0_g1_i4,blat.proc3825156.chain_118,blat.proc3825156.chain_119	6
scaffold_18	spliced_intron	6859375	6859476	+	asmbl_20685	none	STRG.21391.2,blat.proc3825174.chain_2397	2	STRG.21391.1,blat.proc3825174.chain_2398	2
scaffold_7	alt_acceptor	1235751	1235752	+	asmbl_49588,asmbl_49589,asmbl_49590,asmbl_49594,asmbl_49600,asmbl_49604,asmbl_49605,asmbl_49606,asmbl_49607	none	STRG.8637.1,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i4,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1074,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	12	STRG.8637.4,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072	3
scaffold_8	retained_exon	17454425	17454460	+	asmbl_53477	none	STRG.10670.2,Trinity_GG_23215_c0_g1_i1,blat.proc3825168.chain_3162	3	STRG.10670.1,Trinity_GG_23215_c0_g1_i2,blat.proc3825168.chain_3163	3
scaffold_2	spliced_intron	15686210	15686390	+	asmbl_25067	none	STRG.2522.1,Trinity_GG_18746_c0_g1_i2,blat.proc3825164.chain_2814	3	Trinity_GG_18746_c0_g1_i1,blat.proc3825164.chain_2817	2
scaffold_12	starts_in_intron	16176239	16176239	+	asmbl_8149	none	Trinity_GG_25755_c0_g1_i4,blat.proc3825172.chain_88	2	STRG.15373.1,STRG.15373.3,Trinity_GG_25755_c0_g1_i1,Trinity_GG_25755_c0_g1_i3,blat.proc3825172.chain_87,blat.proc3825172.chain_89	6
scaffold_14	skipped_exon	4112821	4113937	-	asmbl_13035	none	STRG.16966.1,Trinity_GG_9474_c0_g1_i1,blat.proc3825156.chain_1736	3	STRG.16966.2,Trinity_GG_9474_c0_g1_i2,blat.proc3825156.chain_1735	3
scaffold_17	retained_intron	7671529	7672234	+	asmbl_18918	none	Trinity_GG_28458_c0_g1_i1,blat.proc3825174.chain_1187	2	STRG.20406.1,blat.proc3825174.chain_1188	2
scaffold_2	retained_intron	10640331	10640648	-	asmbl_23426,asmbl_23427,asmbl_23429	none	STRG.2224.1,blat.proc3825148.chain_2260,blat.proc3825148.chain_2261,blat.proc3825148.chain_2262	4	STRG.2224.3,blat.proc3825148.chain_2263	2
scaffold_19	alternate_exon	3557632	3557817	+	asmbl_21330	none	Trinity_GG_29503_c0_g1_i3,blat.proc3825174.chain_3078	2	STRG.22045.4	1
scaffold_9	alternate_exon	4204204	4206311	+	asmbl_53940	none	STRG.11024.4,blat.proc3825168.chain_3484	2	STRG.11024.2	1
scaffold_21	spliced_intron	7327012	7327159	-	asmbl_27796	none	STRG.24258.1,blat.proc3825160.chain_1406	2	blat.proc3825160.chain_1403	1
scaffold_4	alternate_exon	6705245	6705397	+	asmbl_41425	none	blat.proc3825166.chain_910	1	STRG.4531.3	1
scaffold_50	alt_acceptor	26716	26717	-	asmbl_46483	none	STRG.30058.2,blat.proc3825162.chain_3227	2	STRG.30058.3	1
scaffold_21	spliced_intron	5170097	5170194	-	asmbl_27621,asmbl_27625,asmbl_27626,asmbl_27627	none	STRG.24060.1,blat.proc3825160.chain_1239,blat.proc3825160.chain_1240,blat.proc3825160.chain_1241,blat.proc3825160.chain_1242	5	blat.proc3825160.chain_1237,blat.proc3825160.chain_1238	2
scaffold_4	starts_in_intron	8770705	8770705	+	asmbl_41578,asmbl_41581,asmbl_41582	none	STRG.4691.3,STRG.4691.4,STRG.4691.5,Trinity_GG_19922_c0_g1_i2,blat.proc3825166.chain_1142	5	STRG.4691.1,STRG.4691.2,blat.proc3825166.chain_1141	3
scaffold_11	retained_exon	3607603	3607716	-	asmbl_6556	none	STRG.13491.1,blat.proc3825154.chain_2073	2	STRG.13491.2,blat.proc3825154.chain_2072	2
scaffold_11	spliced_intron	10981968	10982289	-	asmbl_7009	none	STRG.14062.2	1	STRG.14062.1,Trinity_GG_7857_c0_g1_i1,blat.proc3825154.chain_2608	3
scaffold_3	ends_in_intron	2208859	2208859	-	asmbl_38738	none	Trinity_GG_1644_c0_g1_i4,blat.proc3825148.chain_2909	2	STRG.3026.1,blat.proc3825148.chain_2911	2
scaffold_5	retained_intron	14126415	14126522	-	asmbl_44591	none	blat.proc3825150.chain_2773	1	STRG.6623.1	1
scaffold_9	ends_in_intron	5757365	5757365	-	asmbl_55027,asmbl_55029	none	STRG.11147.3,STRG.11147.4	2	STRG.11147.1	1
scaffold_13	alt_acceptor	11979299	11979300	-	asmbl_10118	none	STRG.16331.1	1	blat.proc3825156.chain_1205	1
scaffold_10	alternate_exon	17179879	17179980	+	asmbl_3748	none	STRG.13167.2	1	STRG.13167.1	1
scaffold_5	alternate_exon	4773762	4773944	-	asmbl_44012	none	STRG.5941.4	1	STRG.5941.2,blat.proc3825150.chain_2142	2
scaffold_8	starts_in_intron	17501441	17501441	+	asmbl_53486	none	Trinity_GG_23212_c0_g2_i4,blat.proc3825168.chain_3154	2	STRG.10682.1,STRG.10682.3,STRG.10682.5,blat.proc3825168.chain_3150,blat.proc3825168.chain_3151,blat.proc3825168.chain_3152,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	8
scaffold_1	retained_intron	14189225	14189671	-	asmbl_867	none	Trinity_GG_515_c0_g1_i9,blat.proc3825148.chain_972	2	STRG.1005.1,Trinity_GG_515_c0_g2_i1,blat.proc3825148.chain_968,blat.proc3825148.chain_969,blat.proc3825148.chain_971,blat.proc3825148.chain_974	6
scaffold_9	spliced_intron	15384227	15384504	+	asmbl_54563	none	STRG.11739.3	1	blat.proc3825170.chain_502	1
scaffold_13	alt_donor	16048795	16048796	+	asmbl_11547	none	STRG.16642.1	1	STRG.16642.2,blat.proc3825172.chain_1438	2
scaffold_9	starts_in_intron	4902780	4902780	+	asmbl_53970	none	Trinity_GG_23482_c2_g1_i1,blat.proc3825168.chain_3608	2	STRG.11065.1,STRG.11065.2,blat.proc3825168.chain_3605	3
scaffold_5	alt_donor	14780432	14780433	+	asmbl_45967	none	STRG.6678.1	1	STRG.6678.2,Trinity_GG_20948_c0_g1_i1,blat.proc3825166.chain_2846	3
scaffold_28	retained_intron	4875335	4875549	-	asmbl_38229	none	Trinity_GG_16590_c1_g1_i1,blat.proc3825162.chain_2766	2	STRG.29645.1,STRG.29645.3,Trinity_GG_16590_c0_g1_i2,Trinity_GG_16590_c0_g1_i4,blat.proc3825162.chain_2763,blat.proc3825162.chain_2765	6
scaffold_1	alt_donor	4864310	4864311	-	asmbl_217	none	STRG.292.1,blat.proc3825148.chain_258	2	blat.proc3825148.chain_257	1
scaffold_3	alternate_exon	2661818	2664421	+	asmbl_39914,asmbl_39916	none	STRG.3041.1,STRG.3041.2,blat.proc3825164.chain_3260,blat.proc3825164.chain_3262	4	STRG.3041.3,STRG.3041.4,blat.proc3825164.chain_3261,blat.proc3825164.chain_3263,blat.proc3825164.chain_3264	5
scaffold_5	alt_donor	11992175	11992176	-	asmbl_44429,asmbl_44430	none	STRG.6453.8,STRG.6453.9	2	STRG.6453.4,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	3
scaffold_5	alt_acceptor	9163669	9163670	+	asmbl_45617	none	STRG.6254.1,blat.proc3825166.chain_2467	2	STRG.6254.2	1
scaffold_28	ends_in_intron	7306349	7306349	-	asmbl_38392	none	STRG.29803.4,blat.proc3825162.chain_2984	2	STRG.29803.3	1
scaffold_2	alternate_exon	5703656	5703729	-	asmbl_23156	none	STRG.1962.3	1	STRG.1962.1,STRG.1962.2,blat.proc3825148.chain_1961,blat.proc3825148.chain_1963,blat.proc3825148.chain_1964	5
scaffold_14	ends_in_intron	9995118	9995118	+	asmbl_12309	none	blat.proc3825172.chain_2120	1	STRG.17369.3,blat.proc3825172.chain_2121,blat.proc3825172.chain_2123	3
scaffold_6	alt_donor	4129224	4129225	-	asmbl_48285,asmbl_48287	none	STRG.7388.1,STRG.7388.3	2	STRG.7388.2,blat.proc3825150.chain_3509	2
scaffold_8	alt_acceptor	16503765	16503766	-	asmbl_52405,asmbl_52413,asmbl_52416,asmbl_52419,asmbl_52420,asmbl_52421	none	STRG.10629.4,STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2931,blat.proc3825152.chain_2934,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	8	Trinity_GG_5934_c0_g1_i12,blat.proc3825152.chain_2935	2
scaffold_5	alt_acceptor	14412031	14412032	+	asmbl_45929	none	STRG.6635.2,Trinity_GG_20921_c0_g1_i2,blat.proc3825166.chain_2811	3	STRG.6635.1,Trinity_GG_20921_c0_g1_i1,blat.proc3825166.chain_2810	3
scaffold_20	ends_in_intron	4479407	4479407	-	asmbl_25739	none	Trinity_GG_12886_c0_g1_i3,blat.proc3825160.chain_169	2	STRG.23127.1,STRG.23127.2,STRG.23127.4,blat.proc3825160.chain_167,blat.proc3825160.chain_168,blat.proc3825160.chain_170	6
scaffold_17	retained_intron	1292002	1292436	-	asmbl_17682,asmbl_17687	none	STRG.19964.6,blat.proc3825158.chain_970	2	STRG.19964.4,blat.proc3825158.chain_975	2
scaffold_14	spliced_intron	13897375	13897695	+	asmbl_12509,asmbl_12512	none	STRG.17673.2,STRG.17673.3,blat.proc3825172.chain_2390	3	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2
scaffold_10	starts_in_intron	2486139	2486139	+	asmbl_2977	none	Trinity_GG_24032_c0_g1_i3	1	STRG.12065.1,Trinity_GG_24032_c0_g1_i1,Trinity_GG_24032_c0_g1_i2,blat.proc3825170.chain_823,blat.proc3825170.chain_824	5
scaffold_14	alternate_exon	15910094	15910237	-	asmbl_13763	none	STRG.17833.2,blat.proc3825156.chain_2645	2	STRG.17833.4,Trinity_GG_10019_c0_g1_i2,blat.proc3825156.chain_2646	3
scaffold_1	retained_intron	855428	855520	+	asmbl_1424,asmbl_1427,asmbl_1428,asmbl_1430	none	STRG.43.1,STRG.43.2,STRG.43.3,Trinity_GG_17353_c0_g1_i1,Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142,blat.proc3825164.chain_147	7	STRG.43.4	1
scaffold_2	spliced_intron	13401811	13401905	+	asmbl_24849	none	STRG.2364.1,blat.proc3825164.chain_2547	2	STRG.2364.2,Trinity_GG_18638_c0_g1_i1,blat.proc3825164.chain_2548	3
scaffold_16	starts_in_intron	10978450	10978450	-	asmbl_17324	none	STRG.19645.2	1	STRG.19645.1,blat.proc3825158.chain_660,blat.proc3825158.chain_661	3
scaffold_19	retained_intron	7586777	7587075	-	asmbl_22245	none	STRG.22238.3	1	STRG.22238.1	1
scaffold_12	retained_intron	6947276	6947768	-	asmbl_8550,asmbl_8552	none	STRG.14768.2,blat.proc3825154.chain_3276	2	STRG.14768.1,blat.proc3825154.chain_3277,blat.proc3825154.chain_3278	3
scaffold_6	alternate_exon	12554879	12555019	-	asmbl_48826	none	STRG.8017.2	1	STRG.8017.3,blat.proc3825152.chain_421	2
scaffold_5	alt_donor	14262431	14262432	+	asmbl_45920	none	STRG.6638.3	1	blat.proc3825166.chain_2786	1
scaffold_15	ends_in_intron	6881767	6881767	-	asmbl_14259,asmbl_14260,asmbl_14261,asmbl_14262,asmbl_14263,asmbl_14264,asmbl_14265,asmbl_14267,asmbl_14269,asmbl_14270	none	STRG.18301.2,STRG.18301.3,STRG.18301.4,STRG.18301.5,STRG.18301.6,STRG.18301.7,Trinity_GG_10293_c0_g1_i10,Trinity_GG_10293_c0_g1_i4,Trinity_GG_10293_c0_g1_i6,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3154,blat.proc3825156.chain_3155,blat.proc3825156.chain_3156,blat.proc3825156.chain_3157,blat.proc3825156.chain_3159	17	STRG.18301.1,blat.proc3825156.chain_3158	2
scaffold_8	retained_intron	18248240	18248543	-	asmbl_52524,asmbl_52529,asmbl_52530	none	blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3015,blat.proc3825152.chain_3017	4	STRG.10728.2,STRG.10728.3,blat.proc3825152.chain_3011,blat.proc3825152.chain_3016,blat.proc3825152.chain_3018,blat.proc3825152.chain_3019	6
scaffold_3	skipped_exon	14495186	14495730	-	asmbl_39382,asmbl_39383	none	Trinity_GG_2093_c0_g1_i1,Trinity_GG_2093_c0_g1_i2,blat.proc3825148.chain_3719,blat.proc3825148.chain_3720	4	Trinity_GG_2093_c0_g2_i1,blat.proc3825148.chain_3721	2
scaffold_13	retained_intron	4459134	4459215	+	asmbl_10793,asmbl_10798,asmbl_10799	none	STRG.15770.2,Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_510,blat.proc3825172.chain_512	4	STRG.15770.1,STRG.15770.3,STRG.15770.4,blat.proc3825172.chain_509,blat.proc3825172.chain_511	5
scaffold_10	alternate_exon	1431189	1432104	-	asmbl_4052	none	STRG.12015.3,blat.proc3825154.chain_554	2	STRG.12015.2	1
scaffold_22	ends_in_intron	231917	231917	-	asmbl_29079	none	Trinity_GG_13814_c0_g1_i1,blat.proc3825160.chain_1906	2	STRG.24683.2,STRG.24683.3,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	4
scaffold_15	alt_donor	2903584	2903585	-	asmbl_14060,asmbl_14062	none	STRG.18078.2,STRG.18078.5,blat.proc3825156.chain_2887,blat.proc3825156.chain_2888	4	STRG.18078.6	1
scaffold_5	retained_intron	8413453	8413714	+	asmbl_45548	none	STRG.6187.1,blat.proc3825166.chain_2304,blat.proc3825166.chain_2305	3	STRG.6187.3,blat.proc3825166.chain_2306	2
scaffold_8	spliced_intron	3433549	3433602	+	asmbl_52762	none	STRG.9839.2	1	STRG.9839.1,Trinity_GG_22785_c0_g1_i2,blat.proc3825168.chain_2373,blat.proc3825168.chain_2374	4
scaffold_7	ends_in_intron	6654951	6654951	-	asmbl_50932	none	blat.proc3825152.chain_1405	1	STRG.8943.1,blat.proc3825152.chain_1403,blat.proc3825152.chain_1407	3
scaffold_13	alt_donor	14174306	14174307	+	asmbl_11432,asmbl_11435	none	STRG.16460.5,Trinity_GG_26388_c0_g1_i2,Trinity_GG_26388_c0_g1_i7,blat.proc3825172.chain_1269,blat.proc3825172.chain_1270	5	STRG.16460.2,STRG.16460.4	2
scaffold_15	retained_intron	4964484	4964665	+	asmbl_15182	none	STRG.18207.4	1	STRG.18207.1	1
scaffold_22	retained_intron	4239789	4240805	-	asmbl_29220	none	blat.proc3825160.chain_2066	1	STRG.24845.3	1
scaffold_18	alt_donor	3798260	3798261	-	asmbl_19772,asmbl_19777	none	STRG.21197.1,blat.proc3825158.chain_2176,blat.proc3825158.chain_2179	3	STRG.21197.3,Trinity_GG_11882_c0_g1_i3,blat.proc3825158.chain_2170,blat.proc3825158.chain_2178	4
scaffold_7	retained_exon	15568001	15568071	-	asmbl_51383,asmbl_51384	none	STRG.9555.1,blat.proc3825152.chain_1851	2	blat.proc3825152.chain_1852	1
scaffold_3	alt_donor	3322736	3322737	-	asmbl_38775,asmbl_38776	none	STRG.3080.2,blat.proc3825148.chain_2947	2	STRG.3080.1,blat.proc3825148.chain_2945,blat.proc3825148.chain_2946	3
scaffold_21	ends_in_intron	10965400	10965400	+	asmbl_28901,asmbl_28902	none	Trinity_GG_30885_c0_g1_i2,Trinity_GG_30885_c0_g1_i3,blat.proc3825176.chain_1685,blat.proc3825176.chain_1687	4	STRG.24574.1,STRG.24574.3,Trinity_GG_30885_c0_g1_i4,blat.proc3825176.chain_1688	4
scaffold_114	retained_exon	2143	2244	+	asmbl_7405	none	STRG.30150.1,blat.proc3825178.chain_3276	2	blat.proc3825178.chain_3275	1
scaffold_5	alt_donor	7320400	7320401	+	asmbl_45491	none	STRG.6129.2	1	STRG.6129.1,Trinity_GG_20663_c0_g2_i1,blat.proc3825166.chain_2350	3
scaffold_3	ends_in_intron	1766027	1766027	+	asmbl_39881	none	Trinity_GG_19006_c0_g1_i1,blat.proc3825164.chain_3230	2	STRG.2994.1,STRG.2994.2,STRG.2994.3,Trinity_GG_19006_c0_g1_i5,blat.proc3825164.chain_3227	5
scaffold_137	spliced_intron	8309	8646	-	asmbl_11734	none	STRG.30184.2	1	STRG.30184.1,Trinity_GG_16938_c0_g1_i1,blat.proc3825162.chain_3334	3
scaffold_6	alt_donor	16605331	16605332	+	asmbl_47709	none	STRG.8386.1	1	STRG.8386.3,blat.proc3825168.chain_828,blat.proc3825168.chain_830	3
scaffold_9	retained_exon	15495475	15495510	-	asmbl_55530	none	STRG.11747.1,blat.proc3825154.chain_215	2	STRG.11747.3,blat.proc3825154.chain_218	2
scaffold_10	alt_acceptor	9397813	9397814	+	asmbl_3376	none	blat.proc3825170.chain_1295	1	STRG.12679.1	1
scaffold_7	retained_exon	3390334	3390498	-	asmbl_50791	none	STRG.8747.1	1	STRG.8747.2	1
scaffold_9	retained_intron	12112957	12113296	+	asmbl_54410,asmbl_54412	none	STRG.11537.2,blat.proc3825170.chain_367	2	STRG.11537.3,blat.proc3825170.chain_369	2
scaffold_13	alternate_exon	12870874	12871085	-	asmbl_10143	none	STRG.16379.1	1	STRG.16379.2	1
scaffold_13	skipped_exon	7504347	7505394	-	asmbl_9889	none	blat.proc3825156.chain_909	1	STRG.16047.1,STRG.16047.2,STRG.16047.3,blat.proc3825156.chain_899,blat.proc3825156.chain_900,blat.proc3825156.chain_901,blat.proc3825156.chain_903,blat.proc3825156.chain_905,blat.proc3825156.chain_906,blat.proc3825156.chain_908	10
scaffold_8	starts_in_intron	9466481	9466481	-	asmbl_52040	none	Trinity_GG_5708_c0_g1_i2	1	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	6
scaffold_2	alt_acceptor	17973529	17973530	+	asmbl_25208,asmbl_25209,asmbl_25212	none	STRG.2689.1,STRG.2689.2,blat.proc3825164.chain_2961,blat.proc3825164.chain_2962	4	blat.proc3825164.chain_2963,blat.proc3825164.chain_2964	2
scaffold_4	starts_in_intron	5289914	5289914	-	asmbl_42592	none	blat.proc3825150.chain_686	1	STRG.4423.1,blat.proc3825150.chain_684	2
scaffold_10	alternate_exon	3318220	3318463	-	asmbl_4186	none	STRG.12164.2,blat.proc3825154.chain_694	2	STRG.12164.1	1
scaffold_9	alternate_exon	18389787	18389820	+	asmbl_54662	none	STRG.11879.2,blat.proc3825170.chain_645	2	STRG.11879.1,STRG.11879.3	2
scaffold_825	alt_acceptor	3835	3836	+	asmbl_53685	none	STRG.30482.2	1	STRG.30482.1	1
scaffold_9	starts_in_intron	16566794	16566794	-	asmbl_55588,asmbl_55591	none	Trinity_GG_6524_c0_g1_i4,blat.proc3825154.chain_269,blat.proc3825154.chain_274	3	STRG.11806.1,STRG.11806.2,STRG.11806.3,STRG.11806.4,STRG.11806.5,STRG.11806.6,Trinity_GG_6524_c0_g1_i10,Trinity_GG_6524_c0_g1_i13,blat.proc3825154.chain_265,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_268,blat.proc3825154.chain_271	13
scaffold_24	ends_in_intron	8952604	8952604	-	asmbl_33128	none	Trinity_GG_15077_c0_g1_i3,blat.proc3825162.chain_302	2	STRG.26916.1,blat.proc3825162.chain_300	2
scaffold_7	spliced_intron	12452785	12453235	-	asmbl_51231,asmbl_51233	none	STRG.9354.1,Trinity_GG_5252_c0_g1_i20	2	STRG.9354.2,STRG.9354.3	2
scaffold_3	spliced_intron	8165751	8166312	-	asmbl_39010,asmbl_39022	none	STRG.3440.1,blat.proc3825148.chain_3270	2	Trinity_GG_1828_c10_g1_i1,blat.proc3825148.chain_3284	2
scaffold_15	retained_intron	4117643	4117871	-	asmbl_14122,asmbl_14124	none	STRG.18155.1,STRG.18155.3,Trinity_GG_10180_c0_g1_i1,blat.proc3825156.chain_2938	4	STRG.18155.2,blat.proc3825156.chain_2939	2
scaffold_17	alt_acceptor	11037475	11037476	-	asmbl_18259,asmbl_18260,asmbl_18263	none	STRG.20664.4,STRG.20664.5,STRG.20664.6,blat.proc3825158.chain_1650,blat.proc3825158.chain_1651	5	STRG.20664.7,blat.proc3825158.chain_1653	2
scaffold_23	spliced_intron	5339139	5339871	-	asmbl_30908,asmbl_30913	none	STRG.25911.3,blat.proc3825160.chain_3099	2	STRG.25911.2,Trinity_GG_14511_c0_g1_i7,blat.proc3825160.chain_3097,blat.proc3825160.chain_3098,blat.proc3825160.chain_3102	5
scaffold_2	spliced_intron	2958099	2958664	+	asmbl_24258	none	STRG.1728.2	1	STRG.1728.1,Trinity_GG_18264_c0_g1_i1,blat.proc3825164.chain_1841,blat.proc3825164.chain_1842	4
scaffold_26	skipped_exon	9841126	9842483	-	asmbl_35797	none	STRG.28545.2	1	STRG.28545.1,Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	3
scaffold_13	skipped_exon	11379478	11382289	-	asmbl_10087,asmbl_10088	none	STRG.16301.4,blat.proc3825156.chain_1169	2	STRG.16301.1,STRG.16301.2,blat.proc3825156.chain_1172,blat.proc3825156.chain_1174	4
scaffold_25	skipped_exon	3820067	3820402	-	asmbl_34159	none	Trinity_GG_15320_c0_g1_i3,blat.proc3825162.chain_699	2	STRG.27339.1,STRG.27339.2,Trinity_GG_15320_c0_g1_i2,blat.proc3825162.chain_701	4
scaffold_19	retained_intron	5648006	5648276	-	asmbl_22185	none	STRG.22131.2	1	STRG.22131.1,blat.proc3825158.chain_2912	2
scaffold_21	spliced_intron	8086347	8086431	-	asmbl_27889	none	STRG.24346.2,blat.proc3825160.chain_1496	2	STRG.24346.1,blat.proc3825160.chain_1497	2
scaffold_28	alternate_exon	7229229	7229926	+	asmbl_37640	none	blat.proc3825178.chain_2934	1	STRG.29787.2	1
scaffold_18	alternate_exon	2050823	2050890	-	asmbl_19692,asmbl_19693	none	STRG.21094.2,STRG.21094.3	2	STRG.21094.1,Trinity_GG_11827_c1_g1_i1,blat.proc3825158.chain_2074	3
scaffold_20	starts_in_intron	8341142	8341142	-	asmbl_25982,asmbl_25986	none	STRG.23378.2,blat.proc3825160.chain_506	2	STRG.23378.1,STRG.23378.3,Trinity_GG_13065_c0_g1_i10,blat.proc3825160.chain_507,blat.proc3825160.chain_508,blat.proc3825160.chain_509,blat.proc3825160.chain_511,blat.proc3825160.chain_512	8
scaffold_15	starts_in_intron	11052282	11052282	-	asmbl_14473	none	blat.proc3825156.chain_3432	1	STRG.18588.1,blat.proc3825156.chain_3433,blat.proc3825156.chain_3434	3
scaffold_24	alternate_exon	1909167	1909661	-	asmbl_32747	none	blat.proc3825160.chain_3501	1	STRG.26422.4,blat.proc3825160.chain_3498	2
scaffold_8	spliced_intron	10793464	10793556	+	asmbl_53181	none	STRG.10305.2,blat.proc3825168.chain_2846	2	STRG.10305.1,blat.proc3825168.chain_2848	2
scaffold_10	spliced_intron	1425641	1425931	+	asmbl_2931,asmbl_2935,asmbl_2937	none	STRG.12016.1,STRG.12016.4,STRG.12016.5,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_760,blat.proc3825170.chain_763	6	STRG.12016.2,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_759,blat.proc3825170.chain_762	4
scaffold_25	spliced_intron	6297787	6298085	-	asmbl_34345	none	blat.proc3825162.chain_904	1	Trinity_GG_15438_c0_g1_i2,blat.proc3825162.chain_901	2
scaffold_11	alternate_exon	7048375	7049235	+	asmbl_5649	none	Trinity_GG_24878_c0_g1_i3,blat.proc3825170.chain_2274	2	STRG.13733.2,STRG.13733.3	2
scaffold_8	alt_donor	11848560	11848561	+	asmbl_53280,asmbl_53281	none	blat.proc3825168.chain_3019,blat.proc3825168.chain_3027	2	STRG.10390.4,STRG.10390.5,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	4
scaffold_7	alt_acceptor	15247393	15247394	+	asmbl_50419	none	STRG.9540.1,blat.proc3825168.chain_2110,blat.proc3825168.chain_2112	3	STRG.9540.2,STRG.9540.3,blat.proc3825168.chain_2111	3
scaffold_28	alt_donor	4693976	4693977	+	asmbl_37540	none	STRG.29641.1,blat.proc3825178.chain_2839	2	STRG.29641.2	1
scaffold_27	alt_acceptor	5777205	5777206	-	asmbl_37015	none	STRG.28976.2,blat.proc3825162.chain_2205	2	STRG.28976.1,blat.proc3825162.chain_2204	2
scaffold_8	starts_in_intron	12049302	12049302	-	asmbl_52182	none	blat.proc3825152.chain_2610	1	STRG.10398.1,blat.proc3825152.chain_2611	2
scaffold_11	alt_acceptor	17374080	17374081	+	asmbl_6224	none	STRG.14402.1	1	STRG.14402.2,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	3
scaffold_5	skipped_exon	12728011	12729165	-	asmbl_44477	none	STRG.6508.3	1	STRG.6508.2	1
scaffold_23	alt_donor	6630269	6630270	+	asmbl_31638,asmbl_31639	none	STRG.26012.1,blat.proc3825176.chain_2894	2	STRG.26012.2,blat.proc3825176.chain_2895,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897	4
scaffold_9	ends_in_intron	12635094	12635094	+	asmbl_54449,asmbl_54451	none	blat.proc3825170.chain_401,blat.proc3825170.chain_404	2	STRG.11586.1,STRG.11586.2,STRG.11586.3,blat.proc3825170.chain_403,blat.proc3825170.chain_405,blat.proc3825170.chain_406	6
scaffold_13	starts_in_intron	12105602	12105602	+	asmbl_11334	none	Trinity_GG_26304_c0_g1_i5,blat.proc3825172.chain_1151	2	STRG.16347.1,STRG.16347.2,Trinity_GG_26304_c0_g1_i1,blat.proc3825172.chain_1152	4
scaffold_14	alternate_exon	7451946	7452036	-	asmbl_13204	none	STRG.17187.2	1	STRG.17187.1,blat.proc3825156.chain_1982,blat.proc3825156.chain_1983	3
scaffold_7	starts_in_intron	12070118	12070118	+	asmbl_50216	none	blat.proc3825168.chain_1745	1	STRG.9312.1,blat.proc3825168.chain_1746	2
scaffold_1	spliced_intron	6682486	6683305	+	asmbl_1847	none	STRG.460.1,Trinity_GG_17600_c0_g1_i2,blat.proc3825164.chain_591	3	Trinity_GG_17600_c0_g1_i1,blat.proc3825164.chain_590	2
scaffold_14	retained_intron	6283532	6283649	+	asmbl_12059,asmbl_12060	none	STRG.17079.4,STRG.17079.5,blat.proc3825172.chain_1851	3	STRG.17079.1,STRG.17079.2,STRG.17079.3,blat.proc3825172.chain_1848,blat.proc3825172.chain_1849,blat.proc3825172.chain_1853	6
scaffold_5	retained_exon	6289561	6289649	+	asmbl_45418	none	Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	2	STRG.6040.2	1
scaffold_9	alternate_exon	13932121	13932198	-	asmbl_55465	none	Trinity_GG_6414_c0_g1_i1,blat.proc3825154.chain_92	2	STRG.11669.1,blat.proc3825154.chain_93	2
scaffold_9	alt_acceptor	9734381	9734382	+	asmbl_54246	none	STRG.11353.2,Trinity_GG_23656_c1_g1_i3,blat.proc3825170.chain_199	3	STRG.11353.1,blat.proc3825170.chain_200	2
scaffold_8	retained_intron	4194620	4194679	-	asmbl_51760	none	STRG.9896.1	1	STRG.9896.2	1
scaffold_8	skipped_exon	17810310	17813119	+	asmbl_53505,asmbl_53510	none	STRG.10693.2,STRG.10693.4,Trinity_GG_23223_c0_g1_i5,blat.proc3825168.chain_3183	4	STRG.10693.1,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3180,blat.proc3825168.chain_3184	4
scaffold_24	starts_in_intron	3792080	3792080	+	asmbl_32164	none	Trinity_GG_31988_c0_g1_i1,blat.proc3825176.chain_3498	2	STRG.26564.1,STRG.26564.2,blat.proc3825176.chain_3499	3
scaffold_13	alt_donor	4602711	4602712	-	asmbl_9646,asmbl_9648	none	Trinity_GG_8874_c0_g1_i6,blat.proc3825156.chain_666,blat.proc3825156.chain_673	3	blat.proc3825156.chain_662,blat.proc3825156.chain_670	2
scaffold_26	spliced_intron	9420301	9420411	-	asmbl_35777	none	STRG.28493.1	1	Trinity_GG_15932_c0_g1_i1,blat.proc3825162.chain_1689	2
scaffold_11	ends_in_intron	8432333	8432333	+	asmbl_5773	none	Trinity_GG_24892_c0_g2_i2,blat.proc3825170.chain_2303	2	STRG.13861.1,STRG.13861.3,Trinity_GG_24892_c0_g2_i1,Trinity_GG_24892_c0_g2_i4,blat.proc3825170.chain_2302,blat.proc3825170.chain_2305	6
scaffold_15	alt_acceptor	4230209	4230210	+	asmbl_15132	none	blat.proc3825172.chain_2838	1	STRG.18172.1,STRG.18172.2,Trinity_GG_27280_c0_g1_i5,blat.proc3825172.chain_2837,blat.proc3825172.chain_2839,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842,blat.proc3825172.chain_2843	9
scaffold_14	alternate_exon	14374219	14374247	+	asmbl_12542	none	Trinity_GG_27032_c0_g1_i1	1	blat.proc3825172.chain_2410	1
scaffold_6	retained_intron	7174460	7174541	+	asmbl_47060	none	blat.proc3825168.chain_82	1	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84,blat.proc3825168.chain_85	7
scaffold_3	starts_in_intron	1476764	1476764	+	asmbl_39853	none	Trinity_GG_18984_c0_g1_i1,blat.proc3825164.chain_3195	2	STRG.2968.1,Trinity_GG_18984_c0_g1_i2,blat.proc3825164.chain_3194	3
scaffold_16	retained_exon	7236607	7236702	-	asmbl_17173,asmbl_17175,asmbl_17176	none	STRG.19399.1,STRG.19399.2,STRG.19399.4	3	STRG.19399.3,STRG.19399.5,blat.proc3825158.chain_476	3
scaffold_27	alt_acceptor	381928	381929	-	asmbl_36680	none	STRG.28567.4,blat.proc3825162.chain_1736	2	STRG.28567.1,STRG.28567.3,STRG.28567.5,blat.proc3825162.chain_1731,blat.proc3825162.chain_1733,blat.proc3825162.chain_1735	6
scaffold_5	alt_acceptor	16283052	16283053	+	asmbl_46076,asmbl_46078	none	STRG.6827.2,Trinity_GG_21030_c0_g1_i5,Trinity_GG_21030_c0_g1_i6,blat.proc3825166.chain_2982,blat.proc3825166.chain_2984	5	Trinity_GG_21030_c0_g1_i3,blat.proc3825166.chain_2983	2
scaffold_8	alt_acceptor	16505056	16505057	-	asmbl_52420	none	STRG.10629.5	1	blat.proc3825152.chain_2931	1
scaffold_23	starts_in_intron	7691677	7691677	+	asmbl_31721	none	Trinity_GG_31708_c0_g1_i2,blat.proc3825176.chain_3022	2	STRG.26091.1	1
scaffold_1	retained_intron	14202631	14202724	+	asmbl_2348	none	Trinity_GG_17929_c0_g1_i10,blat.proc3825164.chain_1188	2	STRG.1008.1,STRG.1008.2,Trinity_GG_17929_c0_g1_i5,Trinity_GG_17929_c0_g1_i6,Trinity_GG_17929_c0_g1_i9,blat.proc3825164.chain_1190,blat.proc3825164.chain_1191,blat.proc3825164.chain_1192,blat.proc3825164.chain_1193	9
scaffold_24	retained_intron	8737299	8737413	-	asmbl_33096	none	Trinity_GG_15007_c0_g1_i6,blat.proc3825162.chain_185	2	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_183,blat.proc3825162.chain_184	5
scaffold_3	spliced_intron	6658263	6658355	+	asmbl_40110,asmbl_40111,asmbl_40114,asmbl_40115,asmbl_40116	none	STRG.3295.2,STRG.3295.4,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565,blat.proc3825164.chain_3567	7	STRG.3295.1,STRG.3295.3,Trinity_GG_19180_c0_g1_i15,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3562,blat.proc3825164.chain_3564,blat.proc3825164.chain_3566,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	11
scaffold_24	ends_in_intron	5950286	5950286	+	asmbl_32253,asmbl_32260,asmbl_32264,asmbl_32273	none	blat.proc3825176.chain_3672,blat.proc3825176.chain_3673,blat.proc3825176.chain_3674,blat.proc3825176.chain_3677	4	STRG.26675.1,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3675,blat.proc3825176.chain_3678,blat.proc3825176.chain_3680	7
scaffold_9	retained_exon	8395485	8395534	+	asmbl_54172	none	STRG.11261.4	1	STRG.11261.3,blat.proc3825170.chain_62,blat.proc3825170.chain_63	3
scaffold_5	alternate_exon	3088691	3090502	+	asmbl_45208	none	STRG.5808.2,blat.proc3825166.chain_2048	2	STRG.5808.1	1
scaffold_6	alt_acceptor	13735271	13735272	+	asmbl_47534	none	STRG.8126.3	1	STRG.8126.1,STRG.8126.2,blat.proc3825168.chain_511,blat.proc3825168.chain_512	4
scaffold_7	starts_in_intron	12539640	12539640	-	asmbl_51239	none	blat.proc3825152.chain_1715	1	STRG.9363.1,STRG.9363.2,STRG.9363.3,STRG.9363.4,STRG.9363.5,blat.proc3825152.chain_1713,blat.proc3825152.chain_1714,blat.proc3825152.chain_1717	8
scaffold_23	spliced_intron	5851943	5852135	+	asmbl_31600	none	STRG.25957.2,Trinity_GG_31586_c1_g1_i2,blat.proc3825176.chain_2808	3	STRG.25957.1,Trinity_GG_31586_c1_g1_i1,blat.proc3825176.chain_2807	3
scaffold_12	starts_in_intron	8820644	8820644	+	asmbl_7830	none	Trinity_GG_25551_c0_g1_i2,blat.proc3825170.chain_3464	2	STRG.14893.1,Trinity_GG_25551_c0_g1_i4,Trinity_GG_25551_c0_g1_i5,Trinity_GG_25551_c0_g1_i6,blat.proc3825170.chain_3463,blat.proc3825170.chain_3465,blat.proc3825170.chain_3466	7
scaffold_13	skipped_exon	11379416	11381831	-	asmbl_10082	none	STRG.16301.2,blat.proc3825156.chain_1172	2	STRG.16301.1,blat.proc3825156.chain_1174	2
scaffold_13	alt_acceptor	8353593	8353594	+	asmbl_11125,asmbl_11132	none	STRG.16130.1,STRG.16130.2,blat.proc3825172.chain_915	3	STRG.16130.3	1
scaffold_12	retained_intron	7275750	7275862	-	asmbl_8565	none	Trinity_GG_8260_c0_g1_i5,blat.proc3825154.chain_3306	2	STRG.14801.1,STRG.14801.2,Trinity_GG_8260_c0_g1_i1,Trinity_GG_8260_c0_g1_i2,Trinity_GG_8260_c0_g1_i3,blat.proc3825154.chain_3307,blat.proc3825154.chain_3308,blat.proc3825154.chain_3309	8
scaffold_22	skipped_exon	9718656	9721616	+	asmbl_30315	none	STRG.25308.4	1	STRG.25308.1,STRG.25308.2,STRG.25308.3,blat.proc3825176.chain_2309	4
scaffold_26	alt_acceptor	5945016	5945017	-	asmbl_35653	none	STRG.28306.3	1	STRG.28306.2,Trinity_GG_15823_c1_g1_i1,blat.proc3825162.chain_1511	3
scaffold_14	retained_intron	15566459	15566494	+	asmbl_12625	none	blat.proc3825172.chain_2535	1	STRG.17796.1,STRG.17796.2,STRG.17796.3,blat.proc3825172.chain_2531,blat.proc3825172.chain_2533	5
scaffold_13	alternate_exon	11378132	11378589	-	asmbl_10081	none	STRG.16301.7,Trinity_GG_9138_c0_g2_i1,blat.proc3825156.chain_1175	3	STRG.16301.1,STRG.16301.2,STRG.16301.3,STRG.16301.5,STRG.16301.8,blat.proc3825156.chain_1169,blat.proc3825156.chain_1172,blat.proc3825156.chain_1173,blat.proc3825156.chain_1174	9
scaffold_8	alt_donor	44426	44427	-	asmbl_51688	none	STRG.9710.1,blat.proc3825152.chain_2071	2	STRG.9710.2	1
scaffold_9	alt_acceptor	13891261	13891262	-	asmbl_55451,asmbl_55452	none	STRG.11653.1,STRG.11653.2,blat.proc3825154.chain_113	3	STRG.11653.3	1
scaffold_8	spliced_intron	5216070	5216193	-	asmbl_51828	none	STRG.9968.1,Trinity_GG_5523_c0_g1_i2,blat.proc3825152.chain_2159	3	STRG.9968.2,Trinity_GG_5523_c0_g1_i1,blat.proc3825152.chain_2158	3
scaffold_6	retained_intron	12034964	12035191	-	asmbl_48779	none	STRG.7975.2,blat.proc3825152.chain_365	2	STRG.7975.1,blat.proc3825152.chain_364	2
scaffold_20	spliced_intron	7103318	7104894	-	asmbl_25878	none	STRG.23282.2,blat.proc3825160.chain_375	2	STRG.23282.1,Trinity_GG_12993_c0_g2_i1,blat.proc3825160.chain_373,blat.proc3825160.chain_376,blat.proc3825160.chain_377	5
scaffold_3	alt_acceptor	10631387	10631388	+	asmbl_40282	none	STRG.3513.7,Trinity_GG_19247_c1_g1_i1	2	STRG.3513.1,STRG.3513.2,STRG.3513.3,STRG.3513.4,STRG.3513.5,STRG.3513.6,blat.proc3825164.chain_3682,blat.proc3825164.chain_3684,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688,blat.proc3825164.chain_3689,blat.proc3825164.chain_3691	13
scaffold_19	alt_acceptor	2247788	2247789	-	asmbl_22054	none	blat.proc3825158.chain_2796	1	blat.proc3825158.chain_2795	1
scaffold_20	ends_in_intron	10177289	10177289	-	asmbl_26092	none	Trinity_GG_13131_c0_g2_i1,blat.proc3825160.chain_621	2	STRG.23571.1,STRG.23571.2,blat.proc3825160.chain_620,blat.proc3825160.chain_622	4
scaffold_24	retained_intron	5881520	5881765	-	asmbl_32908,asmbl_32910,asmbl_32912	none	STRG.26654.2,STRG.26654.3,blat.proc3825162.chain_34,blat.proc3825162.chain_35	4	STRG.26654.1,blat.proc3825162.chain_36,blat.proc3825162.chain_37	3
scaffold_2	starts_in_intron	5375028	5375028	-	asmbl_23143	none	STRG.1946.1	1	STRG.1946.2,STRG.1946.3,blat.proc3825148.chain_1904,blat.proc3825148.chain_1906,blat.proc3825148.chain_1907	5
scaffold_27	starts_in_intron	2842600	2842600	+	asmbl_36134	none	Trinity_GG_33229_c0_g1_i5,blat.proc3825178.chain_1920	2	STRG.28769.1,blat.proc3825178.chain_1919	2
scaffold_16	spliced_intron	14552936	14553116	+	asmbl_16689	none	Trinity_GG_28180_c0_g1_i4,blat.proc3825174.chain_733	2	STRG.19851.3,Trinity_GG_28180_c0_g1_i1,Trinity_GG_28180_c0_g1_i6,blat.proc3825174.chain_731,blat.proc3825174.chain_732	5
scaffold_1	skipped_exon	6283987	6285080	-	asmbl_338,asmbl_345,asmbl_346	none	STRG.423.2,STRG.423.3,blat.proc3825148.chain_411	3	STRG.423.1,STRG.423.5,Trinity_GG_229_c0_g1_i9,blat.proc3825148.chain_412,blat.proc3825148.chain_417,blat.proc3825148.chain_418	6
scaffold_5	retained_exon	239064	239201	-	asmbl_43762	none	STRG.5593.2	1	STRG.5593.1	1
scaffold_20	alt_acceptor	2229989	2229990	-	asmbl_25638	none	STRG.22961.1,blat.proc3825160.chain_54	2	STRG.22961.2,blat.proc3825160.chain_55	2
scaffold_12	alternate_exon	12441162	12446898	+	asmbl_8004,asmbl_8007	none	STRG.15151.2,STRG.15151.3,blat.proc3825170.chain_3676,blat.proc3825170.chain_3677	4	Trinity_GG_25666_c1_g1_i1,blat.proc3825170.chain_3675	2
scaffold_6	retained_exon	12551792	12551883	-	asmbl_48826,asmbl_48828	none	STRG.8017.2,blat.proc3825152.chain_421	2	STRG.8017.3,blat.proc3825152.chain_423	2
scaffold_5	retained_intron	15765637	15765727	+	asmbl_46017,asmbl_46018,asmbl_46019,asmbl_46020	none	blat.proc3825166.chain_2916,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	4	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2917	3
scaffold_3	retained_intron	13327306	13327386	-	asmbl_39248	none	Trinity_GG_2014_c0_g1_i1,blat.proc3825148.chain_3554	2	STRG.3680.1,STRG.3680.2,Trinity_GG_2014_c0_g1_i2,blat.proc3825148.chain_3553	4
scaffold_15	starts_in_intron	13573972	13573972	-	asmbl_14645	none	blat.proc3825156.chain_3636	1	STRG.18789.1,blat.proc3825156.chain_3635	2
scaffold_2174	spliced_intron	1221	1252	-	asmbl_29060	none	STRG.30718.1	1	STRG.30718.2	1
scaffold_5	alt_acceptor	6627536	6627537	-	asmbl_44123	none	STRG.6067.2	1	STRG.6067.1,STRG.6067.3,blat.proc3825150.chain_2255,blat.proc3825150.chain_2256	4
scaffold_28	alt_donor	9407993	9407994	+	asmbl_37781	none	STRG.29971.2,blat.proc3825178.chain_3110	2	STRG.29971.1,blat.proc3825178.chain_3111	2
scaffold_28	alt_acceptor	7881064	7881065	-	asmbl_38429	none	blat.proc3825162.chain_3026	1	STRG.29870.1,blat.proc3825162.chain_3029	2
scaffold_6	alternate_exon	3544650	3544691	+	asmbl_46849	none	STRG.7363.2,Trinity_GG_21360_c0_g1_i2,blat.proc3825166.chain_3587	3	STRG.7363.1,Trinity_GG_21360_c0_g1_i1,blat.proc3825166.chain_3588	3
scaffold_19	spliced_intron	11168462	11168662	+	asmbl_21670	none	STRG.22450.1,blat.proc3825174.chain_3410	2	blat.proc3825174.chain_3411	1
scaffold_17	spliced_intron	5138001	5138143	-	asmbl_17922	none	STRG.20247.1,blat.proc3825158.chain_1310	2	STRG.20247.4,blat.proc3825158.chain_1308	2
scaffold_17	spliced_intron	3990087	3990195	-	asmbl_17837	none	STRG.20158.3,blat.proc3825158.chain_1211	2	STRG.20158.2,STRG.20158.4	2
scaffold_7	ends_in_intron	17611814	17611814	+	asmbl_50486	none	Trinity_GG_22616_c0_g1_i2	1	STRG.9612.1,blat.proc3825168.chain_2069	2
scaffold_11	retained_intron	4756626	4756833	+	asmbl_5522	none	blat.proc3825170.chain_2118	1	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2116,blat.proc3825170.chain_2117	4
scaffold_12	retained_intron	12005072	12005349	-	asmbl_8847	none	STRG.15112.3,blat.proc3825154.chain_3633	2	STRG.15112.1,STRG.15112.2,Trinity_GG_8447_c0_g1_i1,blat.proc3825154.chain_3632,blat.proc3825154.chain_3634	5
scaffold_13	starts_in_intron	13973585	13973585	+	asmbl_11418	none	Trinity_GG_26313_c0_g1_i6	1	blat.proc3825172.chain_1171,blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	3
scaffold_7	alt_acceptor	12082548	12082549	+	asmbl_50217,asmbl_50220	none	STRG.9316.1,STRG.9316.3	2	STRG.9316.2,STRG.9316.4	2
scaffold_15	retained_exon	2798116	2798143	+	asmbl_15080	none	blat.proc3825172.chain_2741	1	blat.proc3825172.chain_2742	1
scaffold_5	ends_in_intron	14120347	14120347	+	asmbl_45899	none	Trinity_GG_20902_c2_g1_i1,blat.proc3825166.chain_2775	2	STRG.6622.1,blat.proc3825166.chain_2771,blat.proc3825166.chain_2772	3
scaffold_19	spliced_intron	12491455	12492152	+	asmbl_21808	none	STRG.22590.1,blat.proc3825174.chain_3626	2	STRG.22590.2	1
scaffold_8	starts_in_intron	17595695	17595695	+	asmbl_53494	none	blat.proc3825168.chain_3137	1	STRG.10676.1,blat.proc3825168.chain_3138	2
scaffold_17	alternate_exon	6800181	6800293	+	asmbl_18874	none	STRG.20333.3	1	STRG.20333.1,STRG.20333.2,blat.proc3825174.chain_1165,blat.proc3825174.chain_1166,blat.proc3825174.chain_1167	5
scaffold_7	starts_in_intron	12348830	12348830	+	asmbl_50244	none	STRG.9328.3,Trinity_GG_22493_c0_g1_i2,blat.proc3825168.chain_1857	3	STRG.9328.1,STRG.9328.2,blat.proc3825168.chain_1858	3
scaffold_19	spliced_intron	6213363	6213442	+	asmbl_21398	none	STRG.22153.3,blat.proc3825174.chain_3104	2	blat.proc3825174.chain_3105	1
scaffold_7	retained_intron	16829502	16829802	-	asmbl_51421	none	Trinity_GG_5367_c0_g1_i2,blat.proc3825152.chain_1909	2	STRG.9594.1,blat.proc3825152.chain_1908	2
scaffold_10	ends_in_intron	3127907	3127907	-	asmbl_4164	none	STRG.12135.1,Trinity_GG_6760_c0_g1_i1	2	blat.proc3825154.chain_691	1
scaffold_1	alt_acceptor	6496820	6496821	-	asmbl_362	none	STRG.449.1,blat.proc3825148.chain_351	2	STRG.449.2	1
scaffold_25	starts_in_intron	3172378	3172378	-	asmbl_34108	none	Trinity_GG_15250_c0_g1_i2,blat.proc3825162.chain_589	2	STRG.27255.1,Trinity_GG_15250_c0_g1_i1,blat.proc3825162.chain_591	3
scaffold_23	retained_intron	2608885	2609300	-	asmbl_30754	none	blat.proc3825160.chain_2923	1	STRG.25729.1,blat.proc3825160.chain_2924,blat.proc3825160.chain_2925,blat.proc3825160.chain_2926	4
scaffold_1	alternate_exon	11457417	11457775	-	asmbl_620	none	Trinity_GG_362_c0_g1_i5,blat.proc3825148.chain_670	2	STRG.759.2,blat.proc3825148.chain_674	2
scaffold_20	alt_acceptor	5544109	5544110	+	asmbl_26624	none	STRG.23181.1	1	STRG.23181.2	1
scaffold_12	alt_acceptor	14284089	14284090	+	asmbl_8089	none	STRG.15266.1,blat.proc3825172.chain_16	2	blat.proc3825172.chain_15	1
scaffold_18	spliced_intron	8401454	8401901	+	asmbl_20834,asmbl_20837,asmbl_20839	none	STRG.21513.3,STRG.21513.5,blat.proc3825174.chain_2581	3	STRG.21513.2,STRG.21513.4,blat.proc3825174.chain_2583	3
scaffold_21	alt_acceptor	3015618	3015619	+	asmbl_28433,asmbl_28434,asmbl_28436,asmbl_28437	none	STRG.23928.1,STRG.23928.2,blat.proc3825176.chain_1102,blat.proc3825176.chain_1104,blat.proc3825176.chain_1105,blat.proc3825176.chain_1106	6	blat.proc3825176.chain_1103	1
scaffold_5	alternate_exon	18514707	18515058	-	asmbl_44844	none	STRG.6982.2,blat.proc3825150.chain_3063	2	STRG.6982.3,blat.proc3825150.chain_3061	2
scaffold_15	retained_intron	13327077	13327471	+	asmbl_15628,asmbl_15629,asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15634,asmbl_15635,asmbl_15636,asmbl_15637	none	Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	13	STRG.18771.1	1
scaffold_17	alt_acceptor	1128818	1128819	+	asmbl_18593	none	STRG.19963.1,blat.proc3825174.chain_835	2	STRG.19963.4,blat.proc3825174.chain_838	2
scaffold_11	retained_exon	3497673	3498002	+	asmbl_5441	none	blat.proc3825170.chain_2033	1	blat.proc3825170.chain_2034	1
scaffold_5	retained_exon	6717952	6718042	+	asmbl_45445	none	STRG.6074.2,blat.proc3825166.chain_2238	2	STRG.6074.1,Trinity_GG_20600_c0_g1_i2,blat.proc3825166.chain_2239	3
scaffold_13	alt_donor	10435599	10435600	+	asmbl_11237,asmbl_11240	none	STRG.16250.3,STRG.16250.4,blat.proc3825172.chain_975	3	STRG.16250.1,STRG.16250.2,blat.proc3825172.chain_976,blat.proc3825172.chain_977	4
scaffold_28	ends_in_intron	5634414	5634414	-	asmbl_38307,asmbl_38309,asmbl_38312	none	blat.proc3825162.chain_2855,blat.proc3825162.chain_2856,blat.proc3825162.chain_2859	3	blat.proc3825162.chain_2858	1
scaffold_8	spliced_intron	10040800	10041091	-	asmbl_52093	none	STRG.10261.2,blat.proc3825152.chain_2484	2	STRG.10261.1,blat.proc3825152.chain_2483	2
scaffold_1	starts_in_intron	9651106	9651106	-	asmbl_552	none	blat.proc3825148.chain_641	1	STRG.652.1,STRG.652.2,blat.proc3825148.chain_639,blat.proc3825148.chain_640	4
scaffold_25	retained_intron	7220043	7220502	-	asmbl_34391	none	blat.proc3825162.chain_971	1	STRG.27575.1,blat.proc3825162.chain_972,blat.proc3825162.chain_973	3
scaffold_3	alt_donor	7917879	7917880	-	asmbl_38997,asmbl_39000	none	STRG.3377.2,STRG.3377.4	2	STRG.3377.1,STRG.3377.3	2
scaffold_9	retained_intron	9707335	9707760	+	asmbl_54229,asmbl_54238	none	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_139,blat.proc3825170.chain_142	4	STRG.11349.2,STRG.11349.6,blat.proc3825170.chain_143	3
scaffold_1	skipped_exon	12814383	12814756	-	asmbl_774	none	STRG.906.2	1	STRG.906.1,blat.proc3825148.chain_889	2
scaffold_18	alt_donor	7662113	7662114	+	asmbl_20767,asmbl_20769	none	STRG.21471.1,Trinity_GG_29183_c0_g1_i11	2	STRG.21471.3	1
scaffold_2	starts_in_intron	925676	925676	+	asmbl_24160	none	STRG.1570.9	1	STRG.1570.1,STRG.1570.3,STRG.1570.6,blat.proc3825164.chain_1625,blat.proc3825164.chain_1630,blat.proc3825164.chain_1631,blat.proc3825164.chain_1632	7
scaffold_1	retained_exon	22372256	22372307	+	asmbl_2690,asmbl_2691	none	STRG.1491.3,STRG.1491.4	2	STRG.1491.2,STRG.1491.5	2
scaffold_1	alt_acceptor	14223383	14223384	+	asmbl_2356	none	STRG.1013.2,blat.proc3825164.chain_1149	2	STRG.1013.1,blat.proc3825164.chain_1150	2
scaffold_7	skipped_exon	18393089	18394633	-	asmbl_51467,asmbl_51470,asmbl_51471,asmbl_51472,asmbl_51475,asmbl_51479	none	STRG.9670.2,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2021	9	STRG.9670.1,Trinity_GG_5439_c0_g1_i12,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016	4
scaffold_13	retained_exon	9558209	9558300	+	asmbl_11210	none	STRG.16219.1,blat.proc3825172.chain_1003	2	STRG.16219.2,blat.proc3825172.chain_1004	2
scaffold_6	retained_intron	853752	853844	-	asmbl_48076	none	blat.proc3825150.chain_3268	1	STRG.7151.1,STRG.7151.3,STRG.7151.4,blat.proc3825150.chain_3267	4
scaffold_28	spliced_intron	5014676	5014754	+	asmbl_37555,asmbl_37556,asmbl_37562	none	STRG.29651.1,STRG.29651.2,Trinity_GG_33747_c0_g1_i4,blat.proc3825178.chain_2828,blat.proc3825178.chain_2830	5	Trinity_GG_33747_c0_g1_i1,blat.proc3825178.chain_2829	2
scaffold_7	skipped_exon	4873474	4874735	+	asmbl_49749	none	STRG.8833.1,blat.proc3825168.chain_1296	2	blat.proc3825168.chain_1295	1
scaffold_13	alt_acceptor	398875	398876	-	asmbl_9339	none	Trinity_GG_8688_c0_g2_i3,blat.proc3825156.chain_371	2	Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_368,blat.proc3825156.chain_369	3
scaffold_14	starts_in_intron	12759927	12759927	-	asmbl_13595,asmbl_13598,asmbl_13602,asmbl_13603	none	STRG.17591.2,blat.proc3825156.chain_2474,blat.proc3825156.chain_2475,blat.proc3825156.chain_2476	4	STRG.17591.1	1
scaffold_7	retained_exon	9767588	9767656	-	asmbl_51063	none	STRG.9168.2,blat.proc3825152.chain_1530	2	STRG.9168.1	1
scaffold_3	retained_exon	18141712	18142100	-	asmbl_39592,asmbl_39593,asmbl_39595	none	STRG.4029.1,STRG.4029.3,blat.proc3825150.chain_207,blat.proc3825150.chain_208	4	STRG.4029.2	1
scaffold_18	spliced_intron	2535900	2536164	+	asmbl_20410	none	STRG.21124.1,Trinity_GG_28917_c0_g1_i1,blat.proc3825174.chain_2023	3	STRG.21124.2	1
scaffold_11	alt_donor	848293	848294	+	asmbl_5301	none	STRG.13282.1,blat.proc3825170.chain_1843	2	STRG.13282.2	1
scaffold_8	starts_in_intron	9369921	9369921	-	asmbl_52029	none	blat.proc3825152.chain_2493	1	STRG.10202.3,STRG.10202.4,STRG.10202.5,STRG.10202.6,blat.proc3825152.chain_2494	5
scaffold_1	ends_in_intron	14202248	14202248	+	asmbl_2341,asmbl_2342,asmbl_2343	none	Trinity_GG_17929_c0_g1_i4,blat.proc3825164.chain_1186,blat.proc3825164.chain_1189,blat.proc3825164.chain_1195	4	STRG.1008.1,STRG.1008.2,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i5,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1190,blat.proc3825164.chain_1191,blat.proc3825164.chain_1192	9
scaffold_2	spliced_intron	7469630	7469727	-	asmbl_23260,asmbl_23261,asmbl_23265,asmbl_23266	none	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063,blat.proc3825148.chain_2064	6	blat.proc3825148.chain_2058	1
scaffold_7	ends_in_intron	1230152	1230152	+	asmbl_49598	none	Trinity_GG_22033_c3_g1_i1,blat.proc3825168.chain_1083	2	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i16,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076,blat.proc3825168.chain_1080	11
scaffold_17	ends_in_intron	13085020	13085020	+	asmbl_19314	none	blat.proc3825174.chain_1726	1	STRG.20804.1,blat.proc3825174.chain_1718,blat.proc3825174.chain_1721,blat.proc3825174.chain_1722,blat.proc3825174.chain_1725,blat.proc3825174.chain_1727	6
scaffold_7	alt_acceptor	4035762	4035763	+	asmbl_49713,asmbl_49714	none	STRG.8801.2,Trinity_GG_22135_c0_g1_i3,blat.proc3825168.chain_1242	3	STRG.8801.1,Trinity_GG_22135_c0_g1_i1,Trinity_GG_22135_c0_g1_i4,blat.proc3825168.chain_1241,blat.proc3825168.chain_1243	5
scaffold_3	retained_exon	6189135	6189526	-	asmbl_38914	none	blat.proc3825148.chain_3124	1	STRG.3266.2,blat.proc3825148.chain_3123,blat.proc3825148.chain_3125	3
scaffold_13	skipped_exon	9558041	9558424	+	asmbl_11209	none	STRG.16219.2,blat.proc3825172.chain_1004	2	STRG.16219.1,blat.proc3825172.chain_1003	2
scaffold_16	alt_acceptor	1110323	1110324	-	asmbl_16924	none	STRG.19075.2	1	STRG.19075.1	1
scaffold_23	alt_acceptor	6346024	6346025	+	asmbl_31623	none	STRG.25987.2	1	STRG.25987.1,blat.proc3825176.chain_2926	2
scaffold_2	starts_in_intron	498258	498258	-	asmbl_22810	none	blat.proc3825148.chain_1461	1	STRG.1527.1,blat.proc3825148.chain_1460	2
scaffold_4	alt_donor	5830071	5830072	+	asmbl_41373	none	STRG.4475.1	1	STRG.4475.2,STRG.4475.3	2
scaffold_6	alt_acceptor	17443871	17443872	+	asmbl_47753	none	STRG.8448.1,Trinity_GG_21959_c0_g1_i1,blat.proc3825168.chain_913	3	STRG.8448.2	1
scaffold_21	alt_acceptor	7491267	7491268	+	asmbl_28742	none	blat.proc3825176.chain_1493	1	STRG.24280.1,blat.proc3825176.chain_1494	2
scaffold_24	starts_in_intron	3663313	3663313	+	asmbl_32156	none	Trinity_GG_31940_c0_g1_i1,blat.proc3825176.chain_3424	2	STRG.26549.1,Trinity_GG_31940_c0_g1_i2,blat.proc3825176.chain_3425	3
scaffold_6	spliced_intron	2487326	2487373	+	asmbl_46753,asmbl_46754	none	blat.proc3825166.chain_3496,blat.proc3825166.chain_3498,blat.proc3825166.chain_3499	3	STRG.7248.1,STRG.7248.4,STRG.7248.5,STRG.7248.6	4
scaffold_13	alt_donor	15672201	15672202	+	asmbl_11528,asmbl_11529,asmbl_11530	none	STRG.16612.4,STRG.16612.5,STRG.16612.6	3	STRG.16612.1,STRG.16612.2,STRG.16612.3,blat.proc3825172.chain_1403	4
scaffold_20	alternate_exon	6771192	6771317	+	asmbl_26683	none	STRG.23258.2	1	STRG.23258.1,blat.proc3825176.chain_427	2
scaffold_14	alternate_exon	1377486	1377641	-	asmbl_12875,asmbl_12878	none	STRG.16791.1,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625	3	blat.proc3825156.chain_1623,blat.proc3825156.chain_1626	2
scaffold_6	alt_donor	1750766	1750767	-	asmbl_48113	none	STRG.7232.3,blat.proc3825150.chain_3309	2	STRG.7232.1,STRG.7232.4,STRG.7232.5,blat.proc3825150.chain_3311,blat.proc3825150.chain_3312,blat.proc3825150.chain_3315	6
scaffold_14	retained_intron	3159934	3160251	+	asmbl_11913,asmbl_11923,asmbl_11924	none	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	4	blat.proc3825172.chain_1609	1
scaffold_1	alt_acceptor	18033269	18033270	-	asmbl_1079	none	STRG.1269.1,Trinity_GG_616_c0_g1_i2,blat.proc3825148.chain_1180	3	STRG.1269.2	1
scaffold_9	spliced_intron	16282211	16282310	-	asmbl_55564	none	STRG.11778.2,blat.proc3825154.chain_238	2	STRG.11778.3	1
scaffold_4	alt_acceptor	6188962	6188963	-	asmbl_42660,asmbl_42662	none	STRG.4491.1,STRG.4491.3,Trinity_GG_2477_c0_g1_i3,blat.proc3825150.chain_678	4	STRG.4491.2,Trinity_GG_2477_c0_g1_i1,blat.proc3825150.chain_677,blat.proc3825150.chain_679	4
scaffold_19	ends_in_intron	6839971	6839971	-	asmbl_22234	none	Trinity_GG_12382_c0_g1_i4,blat.proc3825158.chain_3029	2	STRG.22208.1,blat.proc3825158.chain_3028	2
scaffold_13	ends_in_intron	12088923	12088923	+	asmbl_11329	none	Trinity_GG_26303_c0_g1_i4,blat.proc3825172.chain_1146	2	STRG.16346.1,blat.proc3825172.chain_1148	2
scaffold_4	spliced_intron	16582373	16582576	+	asmbl_41981	none	STRG.5234.1,Trinity_GG_20216_c0_g1_i1,blat.proc3825166.chain_1589	3	Trinity_GG_20216_c0_g1_i2,blat.proc3825166.chain_1590	2
scaffold_10	spliced_intron	8329038	8329329	-	asmbl_4577,asmbl_4581,asmbl_4582,asmbl_4583,asmbl_4584	none	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1182,blat.proc3825154.chain_1186,blat.proc3825154.chain_1188,blat.proc3825154.chain_1189,blat.proc3825154.chain_1190	7	blat.proc3825154.chain_1191,blat.proc3825154.chain_1193	2
scaffold_5	retained_intron	9085892	9085964	+	asmbl_45603,asmbl_45604	none	blat.proc3825166.chain_2475,blat.proc3825166.chain_2481	2	STRG.6247.1,STRG.6247.2,Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2474,blat.proc3825166.chain_2476,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2480	8
scaffold_5	alternate_exon	13826263	13826341	-	asmbl_44572	none	STRG.6601.2	1	STRG.6601.1	1
scaffold_17	ends_in_intron	7062936	7062936	-	asmbl_18031	none	Trinity_GG_11463_c0_g2_i1,blat.proc3825158.chain_1429	2	blat.proc3825158.chain_1427	1
scaffold_13	alternate_exon	896155	912224	-	asmbl_9382	none	blat.proc3825156.chain_268	1	Trinity_GG_8651_c0_g1_i8,blat.proc3825156.chain_265	2
scaffold_10	starts_in_intron	11601114	11601114	+	asmbl_3486	none	blat.proc3825170.chain_1426	1	STRG.12815.1,STRG.12815.2,STRG.12815.3,STRG.12815.4,blat.proc3825170.chain_1424,blat.proc3825170.chain_1427,blat.proc3825170.chain_1429	7
scaffold_14	retained_exon	10371698	10371735	-	asmbl_13419	none	STRG.17390.2,blat.proc3825156.chain_2238	2	STRG.17390.1,blat.proc3825156.chain_2237	2
scaffold_21	spliced_intron	11346303	11346361	-	asmbl_28121,asmbl_28123,asmbl_28124	none	STRG.24614.1,STRG.24614.2,STRG.24614.4	3	STRG.24614.3	1
scaffold_4	alternate_exon	14287436	14287722	-	asmbl_43038,asmbl_43040	none	STRG.5037.2,STRG.5037.4,blat.proc3825150.chain_1100	3	STRG.5037.1,STRG.5037.3,blat.proc3825150.chain_1101	3
scaffold_1	alt_acceptor	11174989	11174990	+	asmbl_2082,asmbl_2083	none	STRG.747.3,blat.proc3825164.chain_914	2	STRG.747.2,blat.proc3825164.chain_911	2
scaffold_2	retained_exon	487354	487525	-	asmbl_22802,asmbl_22803	none	STRG.1532.1,STRG.1532.3,blat.proc3825148.chain_1467,blat.proc3825148.chain_1468	4	STRG.1532.2	1
scaffold_11	alt_donor	3497358	3497359	+	asmbl_5438	none	blat.proc3825170.chain_2034	1	STRG.13484.2,blat.proc3825170.chain_2033	2
scaffold_19	starts_in_intron	8806233	8806233	+	asmbl_21559	none	blat.proc3825174.chain_3336	1	STRG.22329.1,STRG.22329.2,STRG.22329.3,STRG.22329.4,blat.proc3825174.chain_3335	5
scaffold_4	retained_exon	10949926	10949958	+	asmbl_41688	none	STRG.4821.2	1	STRG.4821.1,blat.proc3825166.chain_1269	2
scaffold_28	starts_in_intron	3523492	3523492	-	asmbl_38153	none	STRG.29571.2,blat.proc3825162.chain_2723	2	STRG.29571.1	1
scaffold_1	alternate_exon	8753713	8759675	-	asmbl_495	none	STRG.579.2,blat.proc3825148.chain_602	2	STRG.579.3,blat.proc3825148.chain_597	2
scaffold_2	alt_acceptor	20324189	20324190	-	asmbl_23895	none	STRG.2879.1,blat.proc3825148.chain_2762	2	STRG.2879.2	1
scaffold_1	alt_donor	16095684	16095685	-	asmbl_973	none	STRG.1129.3,blat.proc3825148.chain_1117	2	STRG.1129.2,STRG.1129.4,blat.proc3825148.chain_1118,blat.proc3825148.chain_1120	4
scaffold_28	starts_in_intron	7361794	7361794	+	asmbl_37669	none	STRG.29807.2	1	STRG.29807.1,Trinity_GG_33819_c0_g1_i3,blat.proc3825178.chain_2956	3
scaffold_13	alt_donor	3085081	3085082	+	asmbl_10657	none	STRG.15621.1,blat.proc3825172.chain_372	2	STRG.15621.2,blat.proc3825172.chain_370	2
scaffold_4	alt_acceptor	4420971	4420972	+	asmbl_41265	none	STRG.4340.3	1	STRG.4340.1,STRG.4340.2,Trinity_GG_19730_c0_g1_i2,Trinity_GG_19730_c0_g1_i3,blat.proc3825166.chain_795,blat.proc3825166.chain_796	6
scaffold_21	alt_acceptor	255543	255544	-	asmbl_27291	none	blat.proc3825160.chain_807	1	blat.proc3825160.chain_808	1
scaffold_23	alternate_exon	7658152	7664155	+	asmbl_31708	none	blat.proc3825176.chain_2990	1	blat.proc3825176.chain_2989	1
scaffold_8	alternate_exon	9292669	9293142	+	asmbl_53069	none	STRG.10191.2,blat.proc3825168.chain_2749	2	STRG.10191.1,blat.proc3825168.chain_2748	2
scaffold_1	alt_donor	5698152	5698153	+	asmbl_1750	none	STRG.365.1,Trinity_GG_17556_c0_g1_i1,blat.proc3825164.chain_491	3	STRG.365.2	1
scaffold_21	alt_acceptor	3973278	3973279	-	asmbl_27560	none	STRG.23981.2	1	STRG.23981.1,blat.proc3825160.chain_1121	2
scaffold_1	retained_intron	8651374	8651512	-	asmbl_473	none	STRG.569.1,Trinity_GG_322_c1_g1_i3,blat.proc3825148.chain_589	3	STRG.569.2,blat.proc3825148.chain_588	2
scaffold_2	spliced_intron	14193588	14193682	-	asmbl_23567,asmbl_23569,asmbl_23570,asmbl_23571	none	STRG.2416.2,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	4	STRG.2416.1	1
scaffold_7	spliced_intron	1235897	1236590	+	asmbl_49603,asmbl_49604,asmbl_49607	none	STRG.8637.4,STRG.8637.7,Trinity_GG_22033_c0_g1_i5	3	STRG.8637.2	1
scaffold_21	spliced_intron	10097905	10097938	+	asmbl_28856	none	STRG.24472.1	1	STRG.24472.2,STRG.24472.3	2
scaffold_13	alt_acceptor	16142783	16142784	+	asmbl_11560	none	STRG.16655.1	1	blat.proc3825172.chain_1451	1
scaffold_28	retained_intron	8422122	8422142	+	asmbl_37748	none	Trinity_GG_33882_c0_g1_i1,Trinity_GG_33882_c0_g1_i2,blat.proc3825178.chain_3084	3	STRG.29915.1	1
scaffold_18	retained_intron	5584921	5585267	-	asmbl_19862,asmbl_19865	none	blat.proc3825158.chain_2238,blat.proc3825158.chain_2269,blat.proc3825158.chain_2271	3	STRG.21314.1,STRG.21314.2,blat.proc3825158.chain_2270	3
scaffold_1	spliced_intron	4225778	4226020	+	asmbl_1641	none	STRG.254.2,blat.proc3825164.chain_378,blat.proc3825164.chain_381	3	blat.proc3825164.chain_380	1
scaffold_6	retained_exon	13228971	13229093	+	asmbl_47504,asmbl_47506,asmbl_47508	none	STRG.8084.4,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_575	4	STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_577	3
scaffold_8	alternate_exon	9115614	9115679	-	asmbl_51999,asmbl_52000	none	STRG.10169.1,blat.proc3825152.chain_2371,blat.proc3825152.chain_2372,blat.proc3825152.chain_2373	4	STRG.10169.2	1
scaffold_19	alternate_exon	5639126	5643607	-	asmbl_22178,asmbl_22179	none	blat.proc3825158.chain_2946,blat.proc3825158.chain_2947	2	blat.proc3825158.chain_2948	1
scaffold_13	retained_exon	5390824	5390840	+	asmbl_10848	none	STRG.15835.2	1	STRG.15835.1,blat.proc3825172.chain_571	2
scaffold_1	retained_exon	13634836	13634919	+	asmbl_2312	none	STRG.981.1	1	STRG.981.2,blat.proc3825164.chain_1146	2
scaffold_10	starts_in_intron	1172343	1172343	+	asmbl_2916,asmbl_2917	none	STRG.12009.3,STRG.12009.4,Trinity_GG_23997_c1_g1_i1,blat.proc3825170.chain_772	4	STRG.12009.1,STRG.12009.2	2
scaffold_5	retained_exon	237364	237501	-	asmbl_43763	none	STRG.5593.1	1	STRG.5593.2	1
scaffold_3	starts_in_intron	4287951	4287951	+	asmbl_39999	none	Trinity_GG_19043_c0_g1_i3,blat.proc3825164.chain_3299	2	STRG.3135.3	1
scaffold_9	starts_in_intron	1597301	1597301	+	asmbl_53829	none	blat.proc3825168.chain_3377	1	STRG.10851.1,blat.proc3825168.chain_3378	2
scaffold_9	spliced_intron	11551708	11551928	-	asmbl_55296,asmbl_55297	none	STRG.11473.1,STRG.11473.3,blat.proc3825152.chain_3707,blat.proc3825152.chain_3708	4	STRG.11473.2,blat.proc3825152.chain_3710	2
scaffold_25	alternate_exon	9429027	9429092	+	asmbl_33812	none	STRG.27757.1,Trinity_GG_32597_c0_g1_i2,blat.proc3825178.chain_798	3	STRG.27757.3	1
scaffold_4	spliced_intron	14087005	14087119	+	asmbl_41837,asmbl_41838	none	STRG.5028.1,STRG.5028.2,Trinity_GG_20098_c0_g1_i1,Trinity_GG_20098_c0_g1_i3,blat.proc3825166.chain_1409,blat.proc3825166.chain_1411	6	Trinity_GG_20098_c0_g1_i2,blat.proc3825166.chain_1410	2
scaffold_5	starts_in_intron	17002839	17002839	+	asmbl_46125	none	Trinity_GG_21064_c0_g1_i1,blat.proc3825166.chain_3044	2	STRG.6880.1,STRG.6880.2,blat.proc3825166.chain_3042,blat.proc3825166.chain_3043	4
scaffold_3	skipped_exon	16078007	16079016	-	asmbl_39473	none	STRG.3896.1,blat.proc3825150.chain_7	2	STRG.3896.2,STRG.3896.3,blat.proc3825150.chain_8	3
scaffold_10	alt_acceptor	3046800	3046801	-	asmbl_4149	none	STRG.12120.2,blat.proc3825154.chain_595	2	STRG.12120.1,blat.proc3825154.chain_596	2
scaffold_14	retained_intron	7298482	7298744	+	asmbl_12148,asmbl_12151	none	STRG.17169.3,blat.proc3825172.chain_1942	2	Trinity_GG_26761_c0_g1_i6,blat.proc3825172.chain_1943	2
scaffold_3	alternate_exon	19883604	19886549	-	asmbl_39669,asmbl_39671,asmbl_39674	none	STRG.4100.1,STRG.4100.3,STRG.4100.4,Trinity_GG_2243_c1_g1_i1,Trinity_GG_2243_c1_g1_i2,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_242,blat.proc3825150.chain_245,blat.proc3825150.chain_246,blat.proc3825150.chain_248	10	STRG.4100.5	1
scaffold_16	alt_donor	10485580	10485581	+	asmbl_16544	none	STRG.19619.2	1	STRG.19619.1	1
scaffold_6	alternate_exon	8938211	8938341	+	asmbl_47181	none	STRG.7773.4,Trinity_GG_21571_c2_g1_i1,blat.proc3825168.chain_205	3	STRG.7773.3	1
scaffold_23	spliced_intron	5340412	5340615	-	asmbl_30906,asmbl_30908,asmbl_30909,asmbl_30910,asmbl_30912	none	STRG.25911.1,blat.proc3825160.chain_3097,blat.proc3825160.chain_3099,blat.proc3825160.chain_3100,blat.proc3825160.chain_3101,blat.proc3825160.chain_3102	6	STRG.25911.2,STRG.25911.3,Trinity_GG_14511_c0_g1_i7,blat.proc3825160.chain_3098	4
scaffold_1	ends_in_intron	15881465	15881465	+	asmbl_2452	none	blat.proc3825164.chain_1297	1	STRG.1114.1,blat.proc3825164.chain_1298	2
scaffold_5	ends_in_intron	15792177	15792177	-	asmbl_44725	none	Trinity_GG_3798_c0_g1_i1,blat.proc3825150.chain_2956	2	STRG.6769.1,blat.proc3825150.chain_2955	2
scaffold_23	spliced_intron	9518168	9518302	-	asmbl_31105	none	blat.proc3825160.chain_3310	1	Trinity_GG_14629_c0_g1_i3,blat.proc3825160.chain_3309,blat.proc3825160.chain_3311	3
scaffold_1	starts_in_intron	9981456	9981456	+	asmbl_2001	none	blat.proc3825164.chain_793	1	STRG.667.1,blat.proc3825164.chain_795	2
scaffold_10	spliced_intron	9041499	9041894	+	asmbl_3358,asmbl_3360	none	STRG.12653.1,blat.proc3825170.chain_1272,blat.proc3825170.chain_1273	3	Trinity_GG_24291_c0_g1_i2,blat.proc3825170.chain_1271	2
scaffold_10	alternate_exon	11198252	11198322	-	asmbl_4774	none	STRG.12786.2	1	STRG.12786.1,blat.proc3825154.chain_1416	2
scaffold_1	alternate_exon	19006593	19006653	+	asmbl_2574	none	STRG.1324.3	1	STRG.1324.2,STRG.1324.4	2
scaffold_5	spliced_intron	10804890	10804988	+	asmbl_45692,asmbl_45693,asmbl_45695,asmbl_45696	none	STRG.6357.1,STRG.6357.2,blat.proc3825166.chain_2566,blat.proc3825166.chain_2568,blat.proc3825166.chain_2570	5	blat.proc3825166.chain_2567	1
scaffold_21	retained_exon	1680688	1680761	+	asmbl_28353	none	STRG.23821.1,Trinity_GG_30517_c0_g1_i1,blat.proc3825176.chain_1042	3	STRG.23821.2	1
scaffold_6	alt_donor	7937110	7937111	-	asmbl_48511,asmbl_48515,asmbl_48517	none	STRG.7676.2,STRG.7676.4,blat.proc3825152.chain_69	3	STRG.7676.3	1
scaffold_14	retained_intron	10479363	10479549	+	asmbl_12321,asmbl_12324	none	STRG.17398.2,blat.proc3825172.chain_2141,blat.proc3825172.chain_2144	3	STRG.17398.3	1
scaffold_5	spliced_intron	8119952	8121390	-	asmbl_44197	none	STRG.6175.2,blat.proc3825150.chain_2369	2	STRG.6175.1,blat.proc3825150.chain_2370	2
scaffold_13	spliced_intron	11598971	11599668	+	asmbl_11285,asmbl_11286,asmbl_11290,asmbl_11291,asmbl_11294,asmbl_11295	none	STRG.16316.4,STRG.16316.5,STRG.16316.6,blat.proc3825172.chain_1029,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	6	Trinity_GG_26236_c0_g2_i1,blat.proc3825172.chain_1037	2
scaffold_22	alt_acceptor	11640265	11640266	-	asmbl_29689	none	STRG.25513.4	1	STRG.25513.1,STRG.25513.2,STRG.25513.3,Trinity_GG_14246_c0_g1_i1,blat.proc3825160.chain_2631	5
scaffold_9	alternate_exon	11851239	11852170	-	asmbl_55334,asmbl_55337	none	STRG.11503.2,blat.proc3825152.chain_3713,blat.proc3825152.chain_3716	3	blat.proc3825152.chain_3715	1
scaffold_13	retained_exon	366291	366561	-	asmbl_9307	none	STRG.15442.1,Trinity_GG_8663_c0_g1_i6,blat.proc3825156.chain_295	3	STRG.15442.3	1
scaffold_43	spliced_intron	829	875	-	asmbl_43698	none	STRG.30047.6	1	STRG.30047.1,STRG.30047.5	2
scaffold_14	retained_intron	15464262	15464367	+	asmbl_12596	none	Trinity_GG_27075_c1_g1_i2,blat.proc3825172.chain_2485	2	STRG.17779.1,Trinity_GG_27075_c1_g1_i1,blat.proc3825172.chain_2484	3
scaffold_7	skipped_exon	18392945	18394633	-	asmbl_51473	none	STRG.9670.3	1	STRG.9670.1,STRG.9670.2,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016,blat.proc3825152.chain_2021	13
scaffold_9	alternate_exon	15249547	15249573	+	asmbl_54548	none	STRG.11716.1,Trinity_GG_23873_c0_g1_i2	2	STRG.11716.2,Trinity_GG_23873_c0_g1_i1,blat.proc3825170.chain_547	3
scaffold_28	retained_intron	7721599	7722019	+	asmbl_37708	none	Trinity_GG_33846_c1_g1_i2	1	STRG.29845.1,STRG.29845.2,blat.proc3825178.chain_3018,blat.proc3825178.chain_3019,blat.proc3825178.chain_3021,blat.proc3825178.chain_3022	6
scaffold_18	retained_intron	7653749	7654074	+	asmbl_20760	none	Trinity_GG_29173_c1_g1_i1,blat.proc3825174.chain_2504	2	STRG.21465.1,Trinity_GG_29173_c1_g1_i2,blat.proc3825174.chain_2503	3
scaffold_15	skipped_exon	344496	346454	+	asmbl_14959	none	STRG.17885.1,blat.proc3825172.chain_2607	2	STRG.17885.2	1
scaffold_9	alt_acceptor	376913	376914	+	asmbl_53758	none	STRG.10774.1,blat.proc3825168.chain_3298	2	Trinity_GG_23285_c0_g1_i1	1
scaffold_24	starts_in_intron	9671263	9671263	+	asmbl_32531	none	Trinity_GG_32215_c0_g1_i2,blat.proc3825178.chain_156	2	STRG.26956.1,blat.proc3825178.chain_155	2
scaffold_20	spliced_intron	4562562	4562796	+	asmbl_26595	none	STRG.23135.1,Trinity_GG_30047_c0_g1_i2,blat.proc3825176.chain_264	3	Trinity_GG_30047_c0_g1_i1,blat.proc3825176.chain_265	2
scaffold_2	spliced_intron	1301947	1302080	+	asmbl_24177	none	STRG.1609.3,Trinity_GG_18242_c0_g1_i2,blat.proc3825164.chain_1790	3	STRG.1609.2,Trinity_GG_18242_c0_g1_i1,blat.proc3825164.chain_1789	3
scaffold_20	spliced_intron	11931029	11931277	+	asmbl_27104,asmbl_27105	none	STRG.23696.1,STRG.23696.3,blat.proc3825176.chain_836,blat.proc3825176.chain_837	4	blat.proc3825176.chain_838	1
scaffold_2	alt_donor	862077	862078	+	asmbl_24113,asmbl_24114	none	STRG.1562.1,STRG.1562.2,blat.proc3825164.chain_1700	3	STRG.1562.3	1
scaffold_5	starts_in_intron	3936803	3936803	-	asmbl_43933	none	STRG.5863.2	1	STRG.5864.1	1
scaffold_4	spliced_intron	19357212	19357317	-	asmbl_43433,asmbl_43438,asmbl_43440,asmbl_43441	none	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685,blat.proc3825150.chain_1688	5	Trinity_GG_3086_c0_g1_i3,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1681,blat.proc3825150.chain_1687	5
scaffold_6	retained_exon	2844585	2844644	-	asmbl_48168	none	STRG.7282.1,blat.proc3825150.chain_3369	2	STRG.7282.2,STRG.7282.3,blat.proc3825150.chain_3368	3
scaffold_15	ends_in_intron	13981187	13981187	-	asmbl_14694	none	Trinity_GG_10577_c0_g1_i2,blat.proc3825156.chain_3684	2	STRG.18830.2,blat.proc3825156.chain_3683	2
scaffold_21	alternate_exon	3163840	3164139	+	asmbl_28465	none	STRG.23959.6	1	STRG.23959.1,STRG.23959.2,STRG.23959.5,blat.proc3825176.chain_1132,blat.proc3825176.chain_1137,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	7
scaffold_1	alternate_exon	4272409	4272542	+	asmbl_1661	none	STRG.261.4	1	STRG.261.1,STRG.261.2,STRG.261.3,blat.proc3825164.chain_398	4
scaffold_23	spliced_intron	5337942	5338313	-	asmbl_30906,asmbl_30908,asmbl_30910,asmbl_30911	none	STRG.25911.1,STRG.25911.2,blat.proc3825160.chain_3099,blat.proc3825160.chain_3100,blat.proc3825160.chain_3102	5	blat.proc3825160.chain_3101	1
scaffold_7	alternate_exon	11232031	11232119	+	asmbl_50161	none	STRG.9269.2,blat.proc3825168.chain_1763	2	STRG.9269.1	1
scaffold_9	retained_intron	14817657	14817774	-	asmbl_55495,asmbl_55502,asmbl_55504	none	STRG.11702.3,Trinity_GG_6457_c0_g1_i1,blat.proc3825154.chain_161,blat.proc3825154.chain_164	4	STRG.11702.2,STRG.11702.5,blat.proc3825154.chain_159	3
scaffold_9	alt_acceptor	12633013	12633014	+	asmbl_54446,asmbl_54447,asmbl_54449,asmbl_54451,asmbl_54452,asmbl_54453,asmbl_54454	none	STRG.11586.1,STRG.11586.3,STRG.11586.4,STRG.11586.5,blat.proc3825170.chain_401,blat.proc3825170.chain_403,blat.proc3825170.chain_404,blat.proc3825170.chain_405,blat.proc3825170.chain_406	9	STRG.11586.2	1
scaffold_17	retained_intron	14633326	14633465	+	asmbl_19418	none	STRG.20943.2	1	blat.proc3825174.chain_1755	1
scaffold_26	alternate_exon	2250270	2250438	+	asmbl_34738	none	STRG.27955.2	1	STRG.27955.1,blat.proc3825178.chain_1017,blat.proc3825178.chain_1018	3
scaffold_27	spliced_intron	3624875	3625095	+	asmbl_36212,asmbl_36216,asmbl_36217	none	STRG.28832.1,Trinity_GG_33273_c0_g1_i4,blat.proc3825178.chain_2007,blat.proc3825178.chain_2008,blat.proc3825178.chain_2010	5	Trinity_GG_33273_c0_g1_i2,Trinity_GG_33273_c0_g1_i5,blat.proc3825178.chain_2009,blat.proc3825178.chain_2011	4
scaffold_6	alt_donor	8561092	8561093	-	asmbl_48567,asmbl_48568	none	STRG.7737.2,blat.proc3825152.chain_25	2	STRG.7737.1	1
scaffold_17	starts_in_intron	11659821	11659821	-	asmbl_18301	none	blat.proc3825158.chain_1755	1	STRG.20720.1,blat.proc3825158.chain_1754	2
scaffold_4	alt_donor	16912206	16912207	+	asmbl_42009,asmbl_42010	none	STRG.5280.2,STRG.5280.3	2	STRG.5280.1	1
scaffold_11	alternate_exon	16252477	16253777	+	asmbl_6144	none	STRG.14327.3	1	STRG.14327.1,Trinity_GG_25170_c1_g1_i1,blat.proc3825170.chain_2793	3
scaffold_18	retained_exon	10005843	10005935	-	asmbl_20096	none	STRG.21591.1	1	STRG.21591.2	1
scaffold_5	alternate_exon	1096728	1097094	-	asmbl_43821	none	STRG.5661.1	1	STRG.5661.3	1
scaffold_6	retained_intron	6869240	6869357	+	asmbl_47010,asmbl_47011,asmbl_47014	none	STRG.7592.1,STRG.7592.3,blat.proc3825166.chain_3678,blat.proc3825166.chain_3680	4	blat.proc3825166.chain_3681	1
scaffold_5	starts_in_intron	6962299	6962299	-	asmbl_44161	none	blat.proc3825150.chain_2326	1	STRG.6115.1,blat.proc3825150.chain_2325	2
scaffold_3	retained_exon	935528	935956	-	asmbl_38683,asmbl_38685	none	blat.proc3825148.chain_2836,blat.proc3825148.chain_2838	2	STRG.2916.1	1
scaffold_4	skipped_exon	5033786	5035431	-	asmbl_42554	none	STRG.4399.2	1	STRG.4399.1,STRG.4399.3	2
scaffold_19	starts_in_intron	13192966	13192966	-	asmbl_22618	none	Trinity_GG_12588_c1_g1_i9,blat.proc3825158.chain_3437	2	STRG.22653.1,Trinity_GG_12588_c1_g1_i6,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3431,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3436	9
scaffold_13	retained_intron	7109446	7110796	+	asmbl_11010,asmbl_11014	none	STRG.16010.1,Trinity_GG_26113_c0_g1_i5,Trinity_GG_26113_c0_g1_i9,blat.proc3825172.chain_778	4	STRG.16010.2	1
scaffold_9	starts_in_intron	15589107	15589107	+	asmbl_54583	none	blat.proc3825170.chain_533	1	STRG.11750.1,STRG.11750.2,blat.proc3825170.chain_530,blat.proc3825170.chain_531,blat.proc3825170.chain_532	5
scaffold_9	retained_intron	17851854	17852001	+	asmbl_54653,asmbl_54654	none	STRG.11873.3,Trinity_GG_23881_c0_g1_i10,blat.proc3825170.chain_573	3	STRG.11873.1,Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_572	3
scaffold_7	spliced_intron	13953437	13953519	+	asmbl_50387,asmbl_50388	none	STRG.9492.1,Trinity_GG_22583_c0_g1_i2,blat.proc3825168.chain_2010	3	STRG.9492.2,Trinity_GG_22583_c0_g1_i3,Trinity_GG_22583_c0_g1_i5,blat.proc3825168.chain_2008,blat.proc3825168.chain_2009	5
scaffold_27	alt_donor	1959004	1959005	+	asmbl_36049,asmbl_36054	none	STRG.28677.2,blat.proc3825178.chain_1771,blat.proc3825178.chain_1772	3	STRG.28677.1,blat.proc3825178.chain_1775	2
scaffold_11	retained_exon	8102954	8103388	+	asmbl_5728	none	STRG.13823.2,blat.proc3825170.chain_2351	2	STRG.13823.4	1
scaffold_25	skipped_exon	5618720	5619610	-	asmbl_34269	none	STRG.27459.1	1	STRG.27459.2,blat.proc3825162.chain_827	2
scaffold_24	spliced_intron	6307469	6307627	+	asmbl_32305	none	STRG.26696.2	1	STRG.26696.1,blat.proc3825176.chain_3579,blat.proc3825176.chain_3580,blat.proc3825176.chain_3581	4
scaffold_4	starts_in_intron	3381184	3381184	+	asmbl_41192	none	blat.proc3825166.chain_746	1	STRG.4276.1,STRG.4276.2,blat.proc3825166.chain_748,blat.proc3825166.chain_749	4
scaffold_14	retained_exon	10019033	10019103	-	asmbl_13406	none	STRG.17375.4,blat.proc3825156.chain_2153	2	STRG.17375.2,blat.proc3825156.chain_2152	2
scaffold_23	starts_in_intron	10008810	10008810	+	asmbl_31821	none	Trinity_GG_31789_c0_g1_i2,blat.proc3825176.chain_3165	2	STRG.26202.1	1
scaffold_8	starts_in_intron	16543605	16543605	-	asmbl_52428	none	blat.proc3825152.chain_2894	1	STRG.10633.1,blat.proc3825152.chain_2897	2
scaffold_10	ends_in_intron	4542147	4542147	-	asmbl_4300	none	blat.proc3825154.chain_834	1	STRG.12283.1,STRG.12283.2,blat.proc3825154.chain_833	3
scaffold_23	alternate_exon	7910175	7915713	-	asmbl_31060	none	STRG.26100.3,blat.proc3825160.chain_3252	2	STRG.26100.4,Trinity_GG_14594_c2_g1_i1,blat.proc3825160.chain_3256	3
scaffold_13	retained_intron	1238377	1238489	+	asmbl_10552	none	Trinity_GG_25867_c0_g1_i1,blat.proc3825172.chain_308	2	STRG.15494.7	1
scaffold_20	alt_acceptor	5552028	5552029	-	asmbl_25768,asmbl_25770,asmbl_25772,asmbl_25773	none	STRG.23182.3,STRG.23182.4,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216	5	STRG.23182.1,STRG.23182.2,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_217	5
scaffold_17	alternate_exon	2276717	2276935	-	asmbl_17742	none	STRG.20020.2,blat.proc3825158.chain_1062	2	STRG.20020.1,blat.proc3825158.chain_1063	2
scaffold_537	alt_acceptor	3925	3926	-	asmbl_46547	none	STRG.30376.2	1	STRG.30376.1	1
scaffold_25	starts_in_intron	4872796	4872796	-	asmbl_34232	none	blat.proc3825162.chain_779	1	STRG.27422.1,STRG.27422.2,Trinity_GG_15377_c0_g1_i2,blat.proc3825162.chain_777,blat.proc3825162.chain_778	5
scaffold_2	spliced_intron	7938372	7939699	+	asmbl_24599,asmbl_24601,asmbl_24602,asmbl_24603	none	STRG.2090.1,STRG.2090.2,Trinity_GG_18487_c0_g1_i1,Trinity_GG_18487_c0_g1_i6,Trinity_GG_18487_c0_g1_i7,blat.proc3825164.chain_2244,blat.proc3825164.chain_2247,blat.proc3825164.chain_2250	8	Trinity_GG_18487_c0_g1_i8,Trinity_GG_18487_c0_g1_i9,blat.proc3825164.chain_2246,blat.proc3825164.chain_2249	4
scaffold_14	starts_in_intron	9966023	9966023	-	asmbl_13398	none	STRG.17365.2,blat.proc3825156.chain_2192	2	STRG.17365.1	1
scaffold_18	spliced_intron	9629358	9629525	-	asmbl_20063,asmbl_20065,asmbl_20066,asmbl_20067,asmbl_20068	none	STRG.21576.1,STRG.21576.2,blat.proc3825158.chain_2477,blat.proc3825158.chain_2480,blat.proc3825158.chain_2481	5	STRG.21576.4	1
scaffold_1	alternate_exon	12938395	12938554	-	asmbl_780	none	STRG.929.3,STRG.929.4,blat.proc3825148.chain_894	3	STRG.929.2,blat.proc3825148.chain_895	2
scaffold_19	alt_acceptor	1483255	1483256	+	asmbl_21237	none	STRG.21906.2	1	STRG.21906.1,blat.proc3825174.chain_2950	2
scaffold_6	spliced_intron	4535550	4536424	-	asmbl_48337	none	STRG.7434.5	1	STRG.7434.3,STRG.7434.4,Trinity_GG_4189_c0_g1_i1,blat.proc3825150.chain_3582	4
scaffold_6	retained_intron	1498115	1498676	+	asmbl_46708	none	STRG.7191.1,Trinity_GG_21281_c1_g1_i1,blat.proc3825166.chain_3404	3	STRG.7191.3	1
scaffold_5	starts_in_intron	7740976	7740976	+	asmbl_45508	none	blat.proc3825166.chain_2298	1	STRG.6160.1,STRG.6160.2,STRG.6160.3,blat.proc3825166.chain_2297	4
scaffold_10	alternate_exon	2687938	2688051	-	asmbl_4120	none	STRG.12086.1,blat.proc3825154.chain_615	2	STRG.12086.2,blat.proc3825154.chain_614	2
scaffold_28	spliced_intron	7156851	7156991	+	asmbl_37633,asmbl_37634,asmbl_37635,asmbl_37637	none	STRG.29775.1,STRG.29775.2,STRG.29775.3,blat.proc3825178.chain_2925,blat.proc3825178.chain_2926,blat.proc3825178.chain_2927,blat.proc3825178.chain_2928	7	Trinity_GG_33803_c0_g2_i1,blat.proc3825178.chain_2929	2
scaffold_21	retained_intron	10498503	10498605	-	asmbl_28050	none	blat.proc3825160.chain_1743	1	STRG.24519.1,STRG.24519.2,blat.proc3825160.chain_1740,blat.proc3825160.chain_1741,blat.proc3825160.chain_1744,blat.proc3825160.chain_1745	6
scaffold_11	spliced_intron	1983288	1983379	-	asmbl_6462,asmbl_6463,asmbl_6464	none	STRG.13360.1,STRG.13360.2,blat.proc3825154.chain_1942,blat.proc3825154.chain_1944	4	blat.proc3825154.chain_1941	1
scaffold_14	starts_in_intron	15568421	15568421	+	asmbl_12620	none	Trinity_GG_27103_c0_g1_i1,blat.proc3825172.chain_2529	2	STRG.17796.1,STRG.17796.2,STRG.17796.3	3
scaffold_7	spliced_intron	11851032	11851796	+	asmbl_50194	none	STRG.9305.1,blat.proc3825168.chain_1812	2	STRG.9305.2,Trinity_GG_22470_c0_g1_i1,blat.proc3825168.chain_1813,blat.proc3825168.chain_1814	4
scaffold_19	starts_in_intron	13353063	13353063	+	asmbl_21871	none	blat.proc3825174.chain_3677	1	STRG.22659.1,blat.proc3825174.chain_3676	2
scaffold_13	alternate_exon	7452950	7453086	+	asmbl_11058	none	STRG.16041.2	1	STRG.16041.1	1
scaffold_13	alt_acceptor	16433465	16433466	+	asmbl_11574	none	STRG.16695.2,blat.proc3825172.chain_1429	2	STRG.16695.1	1
scaffold_3	spliced_intron	14186116	14186364	-	asmbl_39335	none	blat.proc3825148.chain_3668	1	STRG.3761.1,STRG.3761.4,blat.proc3825148.chain_3664	3
scaffold_4	skipped_exon	12571017	12571399	-	asmbl_42931	none	STRG.4898.2,blat.proc3825150.chain_1086	2	STRG.4898.1,blat.proc3825150.chain_1087	2
scaffold_10	starts_in_intron	5741973	5741973	-	asmbl_4379	none	blat.proc3825154.chain_948	1	STRG.12408.1,STRG.12408.2,blat.proc3825154.chain_946,blat.proc3825154.chain_947	4
scaffold_21	alt_donor	755588	755589	+	asmbl_28302	none	STRG.23772.1,Trinity_GG_30485_c0_g1_i2,blat.proc3825176.chain_986,blat.proc3825176.chain_987	4	STRG.23772.2	1
scaffold_1	retained_intron	12754530	12756067	+	asmbl_2252	none	STRG.896.1,Trinity_GG_17878_c0_g1_i2,blat.proc3825164.chain_1094	3	STRG.896.2,blat.proc3825164.chain_1095	2
scaffold_9	retained_intron	11777566	11777749	+	asmbl_54378	none	Trinity_GG_23725_c0_g1_i1,blat.proc3825170.chain_312	2	STRG.11489.1	1
scaffold_25	alt_acceptor	4820564	4820565	+	asmbl_33535,asmbl_33537	none	STRG.27418.2,STRG.27418.3,Trinity_GG_32399_c0_g1_i1,blat.proc3825178.chain_471	4	STRG.27418.1,Trinity_GG_32399_c0_g1_i2,blat.proc3825178.chain_470	3
scaffold_19	retained_intron	12107159	12107238	-	asmbl_22458	none	STRG.22539.3,blat.proc3825158.chain_3193	2	STRG.22539.1,STRG.22539.2,STRG.22539.5,blat.proc3825158.chain_3188,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	6
scaffold_19	alt_acceptor	8753724	8753725	+	asmbl_21548	none	blat.proc3825174.chain_3313	1	STRG.22336.1,blat.proc3825174.chain_3312	2
scaffold_3	alternate_exon	15800427	15800454	+	asmbl_40579	none	STRG.3857.2	1	STRG.3857.1,Trinity_GG_19475_c0_g1_i1,blat.proc3825166.chain_354	3
scaffold_10	spliced_intron	6075361	6075518	-	asmbl_4432	none	blat.proc3825154.chain_1034	1	blat.proc3825154.chain_1026,blat.proc3825154.chain_1027	2
scaffold_2	alt_acceptor	960788	960789	-	asmbl_22830	none	STRG.1578.2	1	STRG.1578.1,Trinity_GG_839_c0_g1_i1,blat.proc3825148.chain_1520	3
scaffold_28	alt_donor	8908653	8908654	-	asmbl_38486	none	STRG.29951.2,Trinity_GG_16798_c0_g1_i1,blat.proc3825162.chain_3125	3	STRG.29951.1,blat.proc3825162.chain_3124	2
scaffold_12	alternate_exon	7591248	7591701	-	asmbl_8601	none	Trinity_GG_8279_c0_g1_i1,blat.proc3825154.chain_3350	2	STRG.14839.1,blat.proc3825154.chain_3348	2
scaffold_19	retained_intron	13010845	13011231	-	asmbl_22579,asmbl_22580	none	STRG.22624.2,Trinity_GG_12599_c0_g1_i4,blat.proc3825158.chain_3454,blat.proc3825158.chain_3457	4	STRG.22624.1,blat.proc3825158.chain_3455,blat.proc3825158.chain_3456	3
scaffold_5	starts_in_intron	8138032	8138032	+	asmbl_45537	none	blat.proc3825166.chain_2399	1	STRG.6190.1,STRG.6190.2,STRG.6190.3,blat.proc3825166.chain_2396,blat.proc3825166.chain_2397,blat.proc3825166.chain_2398	6
scaffold_11	alternate_exon	12917666	12917717	-	asmbl_7108	none	STRG.14176.2,blat.proc3825154.chain_2722	2	STRG.14176.3	1
scaffold_11	retained_intron	6534474	6535499	-	asmbl_6720	none	STRG.13702.2,blat.proc3825154.chain_2273	2	STRG.13702.1,blat.proc3825154.chain_2271	2
scaffold_28	retained_intron	9225948	9225986	-	asmbl_38497,asmbl_38498	none	STRG.29966.1,Trinity_GG_16810_c0_g1_i1,Trinity_GG_16810_c0_g1_i2,blat.proc3825162.chain_3141,blat.proc3825162.chain_3142	5	STRG.29966.3	1
scaffold_26	alt_donor	6693568	6693569	-	asmbl_35694	none	STRG.28358.1,blat.proc3825162.chain_1591	2	STRG.28358.2,blat.proc3825162.chain_1590	2
scaffold_12	alt_donor	14989687	14989688	-	asmbl_9024	none	STRG.15298.3,Trinity_GG_8566_c0_g1_i2,Trinity_GG_8566_c0_g1_i5,blat.proc3825156.chain_116,blat.proc3825156.chain_117	5	STRG.15298.1,Trinity_GG_8566_c0_g1_i1,blat.proc3825156.chain_118	3
scaffold_1	starts_in_intron	5997066	5997066	-	asmbl_309	none	STRG.404.3,blat.proc3825148.chain_400	2	STRG.404.2,blat.proc3825148.chain_399	2
scaffold_13	alt_donor	3733822	3733823	+	asmbl_10730,asmbl_10731,asmbl_10733	none	STRG.15695.2,blat.proc3825172.chain_447	2	STRG.15695.1,blat.proc3825172.chain_441	2
scaffold_2	alt_acceptor	17722022	17722023	+	asmbl_25198	none	blat.proc3825164.chain_2951	1	blat.proc3825164.chain_2950	1
scaffold_7	skipped_exon	1229953	1231347	+	asmbl_49594,asmbl_49600,asmbl_49602,asmbl_49603,asmbl_49605,asmbl_49606,asmbl_49607	none	STRG.8637.1,STRG.8637.2,STRG.8637.4,STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	8	STRG.8637.7,Trinity_GG_22033_c0_g1_i16,blat.proc3825168.chain_1080	3
scaffold_7	starts_in_intron	12634165	12634165	-	asmbl_51256	none	STRG.9375.1,blat.proc3825152.chain_1669	2	blat.proc3825152.chain_1668	1
scaffold_1	ends_in_intron	922134	922134	+	asmbl_1442	none	Trinity_GG_17320_c0_g1_i1,blat.proc3825164.chain_86	2	STRG.49.1,STRG.49.2,STRG.49.3,Trinity_GG_17320_c0_g1_i4,Trinity_GG_17320_c0_g1_i6,Trinity_GG_17320_c0_g1_i7,blat.proc3825164.chain_83,blat.proc3825164.chain_84,blat.proc3825164.chain_85	9
scaffold_28	spliced_intron	8051811	8052141	+	asmbl_37719	none	STRG.29872.1,Trinity_GG_33824_c0_g1_i1,blat.proc3825178.chain_2971	3	Trinity_GG_33824_c0_g1_i2,blat.proc3825178.chain_2970	2
scaffold_20	alt_acceptor	12095031	12095032	-	asmbl_26223	none	STRG.23707.1	1	STRG.23707.2,blat.proc3825160.chain_788	2
scaffold_3	spliced_intron	4268351	4268565	-	asmbl_38794	none	STRG.3121.3	1	STRG.3121.1,Trinity_GG_1688_c0_g1_i1,blat.proc3825148.chain_2979	3
scaffold_10	spliced_intron	2668937	2669198	+	asmbl_2986,asmbl_2988	none	STRG.12087.1,STRG.12087.2,blat.proc3825170.chain_843	3	blat.proc3825170.chain_844	1
scaffold_14	alternate_exon	14387178	14387585	+	asmbl_12544	none	STRG.17700.1	1	STRG.17700.3,blat.proc3825172.chain_2406	2
scaffold_6	spliced_intron	4319469	4319899	+	asmbl_46878	none	STRG.7409.3	1	STRG.7409.1,Trinity_GG_21371_c0_g1_i7,blat.proc3825166.chain_3611,blat.proc3825166.chain_3612,blat.proc3825166.chain_3613,blat.proc3825166.chain_3615	6
scaffold_4	alternate_exon	248696	249449	+	asmbl_41092	none	STRG.4120.2	1	Trinity_GG_19610_c0_g1_i1,blat.proc3825166.chain_586	2
scaffold_13	alt_acceptor	5127487	5127488	+	asmbl_10825,asmbl_10826,asmbl_10827	none	STRG.15817.1,blat.proc3825172.chain_557,blat.proc3825172.chain_558,blat.proc3825172.chain_559	4	STRG.15817.2,STRG.15817.3	2
scaffold_4	skipped_exon	16872570	16873884	-	asmbl_43228	none	STRG.5273.2	1	STRG.5273.1,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	3
scaffold_8	retained_intron	9586999	9587093	+	asmbl_53089	none	blat.proc3825168.chain_2773	1	STRG.10216.3,blat.proc3825168.chain_2772,blat.proc3825168.chain_2775,blat.proc3825168.chain_2776	4
scaffold_4	retained_exon	14318666	14318970	-	asmbl_43043	none	STRG.5048.1,blat.proc3825150.chain_1206	2	STRG.5048.2,blat.proc3825150.chain_1204	2
scaffold_1	skipped_exon	849299	849972	+	asmbl_1419	none	STRG.42.1,Trinity_GG_17343_c0_g1_i2,blat.proc3825164.chain_125	3	STRG.42.2,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_127	3
scaffold_1	alt_acceptor	3645911	3645912	+	asmbl_1622	none	STRG.233.2,blat.proc3825164.chain_361	2	STRG.233.1,blat.proc3825164.chain_360	2
scaffold_16	retained_exon	8893071	8893116	+	asmbl_16448	none	STRG.19508.1,Trinity_GG_27991_c0_g1_i1,blat.proc3825174.chain_420	3	STRG.19508.2	1
scaffold_19	alt_acceptor	8805816	8805817	+	asmbl_21556	none	STRG.22329.2	1	STRG.22329.1,STRG.22329.4,blat.proc3825174.chain_3335	3
scaffold_10	retained_intron	11968331	11968370	+	asmbl_3513	none	Trinity_GG_24389_c2_g1_i1,blat.proc3825170.chain_1455	2	STRG.12839.1	1
scaffold_4	ends_in_intron	8825504	8825504	-	asmbl_42795	none	blat.proc3825150.chain_834	1	STRG.4698.1,STRG.4698.2,blat.proc3825150.chain_832,blat.proc3825150.chain_833	4
scaffold_18	retained_intron	7943320	7944083	-	asmbl_19986	none	Trinity_GG_12022_c0_g1_i2,blat.proc3825158.chain_2408	2	STRG.21493.1	1
scaffold_21	ends_in_intron	8529061	8529061	+	asmbl_28820	none	blat.proc3825176.chain_1466	1	STRG.24391.1,blat.proc3825176.chain_1459,blat.proc3825176.chain_1461,blat.proc3825176.chain_1464,blat.proc3825176.chain_1465	5
scaffold_5	skipped_exon	1227975	1228566	-	asmbl_43841	none	STRG.5676.2	1	STRG.5676.1,blat.proc3825150.chain_1906	2
scaffold_22	alternate_exon	6223181	6223386	-	asmbl_29324,asmbl_29326	none	STRG.24984.1,STRG.24984.3	2	STRG.24984.4	1
scaffold_5	retained_intron	10195447	10195577	-	asmbl_44325	none	blat.proc3825150.chain_2532	1	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531,blat.proc3825150.chain_2533	8
scaffold_4	alt_donor	16665803	16665804	+	asmbl_41997	none	STRG.5253.2,blat.proc3825166.chain_1610	2	STRG.5253.1,blat.proc3825166.chain_1611	2
scaffold_18	alternate_exon	9684581	9684605	-	asmbl_20079	none	STRG.21580.3	1	STRG.21580.1,STRG.21580.2,blat.proc3825158.chain_2490	3
scaffold_11	alternate_exon	8045471	8045670	+	asmbl_5708	none	STRG.13811.1,Trinity_GG_24887_c0_g1_i1,blat.proc3825170.chain_2288	3	STRG.13811.2	1
scaffold_4	alternate_exon	16576270	16576434	+	asmbl_41975	none	STRG.5236.1,blat.proc3825166.chain_1573	2	STRG.5236.2,blat.proc3825166.chain_1570	2
scaffold_17	spliced_intron	10097780	10097808	+	asmbl_19177	none	STRG.20627.1	1	Trinity_GG_28571_c0_g1_i1,Trinity_GG_28571_c0_g1_i2,blat.proc3825174.chain_1416	3
scaffold_6	alt_acceptor	10916877	10916878	+	asmbl_47312	none	blat.proc3825168.chain_387	1	STRG.7909.3,blat.proc3825168.chain_386	2
scaffold_5	ends_in_intron	6270726	6270726	-	asmbl_44088	none	blat.proc3825150.chain_2244	1	STRG.6037.1,STRG.6037.2,blat.proc3825150.chain_2242	3
scaffold_1	spliced_intron	5618829	5618888	+	asmbl_1732	none	STRG.355.3	1	STRG.355.1,STRG.355.2	2
scaffold_14	alternate_exon	11076983	11077064	-	asmbl_13445	none	STRG.17446.2	1	STRG.17446.3,blat.proc3825156.chain_2240	2
scaffold_20	alt_acceptor	9656253	9656254	+	asmbl_26879	none	STRG.23507.1,Trinity_GG_30297_c0_g1_i1,blat.proc3825176.chain_662	3	STRG.23507.2	1
scaffold_13	retained_exon	7269334	7269452	-	asmbl_9867,asmbl_9871	none	STRG.16029.1,blat.proc3825156.chain_939,blat.proc3825156.chain_940	3	blat.proc3825156.chain_941,blat.proc3825156.chain_943	2
scaffold_6	spliced_intron	12653940	12654089	+	asmbl_47429	none	STRG.8027.1,blat.proc3825168.chain_449	2	STRG.8027.2,Trinity_GG_21691_c1_g1_i4,blat.proc3825168.chain_447	3
scaffold_15	ends_in_intron	4490451	4490451	+	asmbl_15141	none	blat.proc3825172.chain_2860	1	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2857,blat.proc3825172.chain_2858	8
scaffold_13	starts_in_intron	14310823	14310823	-	asmbl_10184	none	blat.proc3825156.chain_1327	1	STRG.16478.1,blat.proc3825156.chain_1328	2
scaffold_28	spliced_intron	9681871	9681946	+	asmbl_37801,asmbl_37803	none	STRG.29999.1,blat.proc3825178.chain_3139,blat.proc3825178.chain_3140	3	blat.proc3825178.chain_3138	1
scaffold_20	alt_acceptor	1126365	1126366	-	asmbl_25544	none	STRG.22825.1	1	blat.proc3825158.chain_3682	1
scaffold_18	alt_donor	5984775	5984776	+	asmbl_20638,asmbl_20642	none	blat.proc3825174.chain_2286,blat.proc3825174.chain_2288,blat.proc3825174.chain_2290,blat.proc3825174.chain_2292	4	blat.proc3825174.chain_2287	1
scaffold_24	skipped_exon	2979214	2981583	-	asmbl_32812	none	STRG.26508.2,blat.proc3825160.chain_3574	2	STRG.26508.1,blat.proc3825160.chain_3573	2
scaffold_22	alt_donor	9124205	9124206	-	asmbl_29515	none	STRG.25245.1	1	STRG.25245.2,STRG.25245.3	2
scaffold_12	alternate_exon	10180202	10180259	+	asmbl_7909	none	STRG.14990.1	1	STRG.14990.2,blat.proc3825170.chain_3553	2
scaffold_2	ends_in_intron	7257951	7257951	+	asmbl_24559	none	STRG.2056.1,blat.proc3825164.chain_2256	2	STRG.2056.2,blat.proc3825164.chain_2255	2
scaffold_3	alt_acceptor	12703125	12703126	-	asmbl_39229	none	STRG.3665.1,blat.proc3825148.chain_3520	2	STRG.3665.2	1
scaffold_9	alt_acceptor	16282359	16282360	-	asmbl_55566	none	STRG.11778.3	1	STRG.11778.1,blat.proc3825154.chain_239	2
scaffold_3	alternate_exon	15785044	15785345	-	asmbl_39452	none	blat.proc3825148.chain_3732	1	STRG.3859.3	1
scaffold_3	ends_in_intron	7726260	7726260	+	asmbl_40177	none	STRG.3359.1	1	blat.proc3825164.chain_3637,blat.proc3825164.chain_3638	2
scaffold_11	alt_acceptor	8295678	8295679	+	asmbl_5744	none	STRG.13837.2	1	STRG.13837.1,Trinity_GG_24926_c0_g1_i2,blat.proc3825170.chain_2364	3
scaffold_6	starts_in_intron	16468389	16468389	+	asmbl_47700	none	Trinity_GG_21910_c0_g1_i1,blat.proc3825168.chain_823	2	STRG.8376.2,blat.proc3825168.chain_821	2
scaffold_6	retained_intron	10958023	10958151	-	asmbl_48726	none	blat.proc3825152.chain_307	1	STRG.7913.1,blat.proc3825152.chain_306	2
scaffold_19	alt_donor	10637238	10637239	-	asmbl_22350	none	STRG.22413.1,blat.proc3825158.chain_3119	2	STRG.22413.2	1
scaffold_1	retained_intron	19006302	19006412	+	asmbl_2572	none	STRG.1324.4	1	STRG.1324.2,STRG.1324.3	2
scaffold_16	alternate_exon	3870488	3870581	-	asmbl_17007	none	STRG.19196.1,blat.proc3825158.chain_332	2	STRG.19196.3	1
scaffold_17	alternate_exon	2349381	2356400	+	asmbl_18638,asmbl_18641,asmbl_18642	none	STRG.20030.4,STRG.20030.5,STRG.20030.6	3	blat.proc3825174.chain_910	1
scaffold_20	retained_intron	253640	254205	-	asmbl_25479	none	STRG.22719.1	1	STRG.22719.4	1
scaffold_4	starts_in_intron	4096236	4096236	+	asmbl_41226	none	blat.proc3825166.chain_710	1	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,blat.proc3825166.chain_703,blat.proc3825166.chain_704,blat.proc3825166.chain_705,blat.proc3825166.chain_707	8
scaffold_1	starts_in_intron	14363146	14363146	-	asmbl_907	none	blat.proc3825148.chain_1031	1	STRG.1037.1,STRG.1037.2,STRG.1037.3,blat.proc3825148.chain_1032,blat.proc3825148.chain_1034,blat.proc3825148.chain_1035	6
scaffold_28	spliced_intron	2199318	2199412	+	asmbl_37348,asmbl_37350	none	STRG.29391.2,STRG.29391.3,blat.proc3825178.chain_2550	3	STRG.29391.1,blat.proc3825178.chain_2548,blat.proc3825178.chain_2549	3
scaffold_28	alt_donor	7720311	7720312	+	asmbl_37703,asmbl_37706	none	STRG.29845.1,blat.proc3825178.chain_3019,blat.proc3825178.chain_3022	3	blat.proc3825178.chain_3018	1
scaffold_18	spliced_intron	8726003	8726179	+	asmbl_20857,asmbl_20862	none	STRG.21537.3,blat.proc3825174.chain_2618,blat.proc3825174.chain_2620	3	STRG.21537.2,blat.proc3825174.chain_2615,blat.proc3825174.chain_2617	3
scaffold_2	spliced_intron	1598188	1598295	+	asmbl_24211,asmbl_24215	none	STRG.1627.1,blat.proc3825164.chain_1823,blat.proc3825164.chain_1824	3	STRG.1627.2,STRG.1627.3,STRG.1627.4	3
scaffold_13	spliced_intron	2506963	2507489	+	asmbl_10619	none	STRG.15559.1,Trinity_GG_25851_c0_g1_i5,blat.proc3825172.chain_284	3	STRG.15559.3,Trinity_GG_25851_c0_g1_i1,Trinity_GG_25851_c0_g1_i2,blat.proc3825172.chain_286,blat.proc3825172.chain_287	5
scaffold_15	starts_in_intron	7907618	7907618	-	asmbl_14321	none	blat.proc3825156.chain_3164	1	STRG.18370.1	1
scaffold_23	skipped_exon	5862921	5863836	-	asmbl_30952	none	Trinity_GG_14540_c0_g1_i2,blat.proc3825160.chain_3151	2	STRG.25971.1,Trinity_GG_14540_c0_g1_i3,blat.proc3825160.chain_3150	3
scaffold_2	starts_in_intron	6209061	6209061	-	asmbl_23186	none	blat.proc3825148.chain_1931	1	STRG.1987.1,blat.proc3825148.chain_1932,blat.proc3825148.chain_1933	3
scaffold_13	ends_in_intron	8301544	8301544	+	asmbl_11117	none	blat.proc3825172.chain_896	1	STRG.16123.1,STRG.16123.2,blat.proc3825172.chain_897,blat.proc3825172.chain_898	4
scaffold_4	retained_intron	1307873	1308003	+	asmbl_41104	none	STRG.4170.1,Trinity_GG_19626_c0_g1_i1,blat.proc3825166.chain_607	3	STRG.4170.2,blat.proc3825166.chain_606	2
scaffold_10	ends_in_intron	13783545	13783545	+	asmbl_3623	none	STRG.12979.3	1	STRG.12979.1,STRG.12979.2	2
scaffold_1	skipped_exon	15280038	15281398	+	asmbl_2437	none	STRG.1094.1	1	STRG.1094.2,STRG.1094.3,blat.proc3825164.chain_1250	3
scaffold_27	spliced_intron	6782467	6782627	-	asmbl_37079,asmbl_37082	none	STRG.29050.3,STRG.29050.4,blat.proc3825162.chain_2278,blat.proc3825162.chain_2280	4	Trinity_GG_16292_c0_g1_i1,blat.proc3825162.chain_2275	2
scaffold_3	skipped_exon	10628826	10630201	+	asmbl_40283,asmbl_40289	none	STRG.3513.4,STRG.3513.6,blat.proc3825164.chain_3689	3	STRG.3513.2,STRG.3513.5,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688	5
scaffold_9	retained_intron	15384227	15384899	+	asmbl_54562	none	blat.proc3825170.chain_502	1	STRG.11739.2,STRG.11739.4,blat.proc3825170.chain_498,blat.proc3825170.chain_499,blat.proc3825170.chain_500	5
scaffold_18	alt_acceptor	282125	282126	+	asmbl_20287	none	STRG.20984.4,blat.proc3825174.chain_1902	2	STRG.20984.1,STRG.20984.2,blat.proc3825174.chain_1903	3
scaffold_21	retained_intron	5980259	5980363	-	asmbl_27713	none	STRG.24137.2	1	STRG.24137.1,STRG.24137.3	2
scaffold_10	retained_intron	9554427	9554812	+	asmbl_3399	none	blat.proc3825170.chain_1284	1	STRG.12711.1,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1287	3
scaffold_19	retained_exon	12079283	12079387	-	asmbl_22447	none	STRG.22531.1,Trinity_GG_12503_c0_g1_i1,blat.proc3825158.chain_3226	3	STRG.22531.2	1
scaffold_11	skipped_exon	13576442	13579141	-	asmbl_7141,asmbl_7142	none	STRG.14217.1,STRG.14217.3,blat.proc3825154.chain_2696,blat.proc3825154.chain_2699	4	STRG.14217.2,blat.proc3825154.chain_2698	2
scaffold_28	skipped_exon	7490219	7493147	+	asmbl_37686	none	STRG.29829.2,blat.proc3825178.chain_3003	2	STRG.29829.1,blat.proc3825178.chain_3002	2
scaffold_6	alt_donor	10400148	10400149	-	asmbl_48701	none	STRG.7880.1,blat.proc3825152.chain_260	2	STRG.7880.2,blat.proc3825152.chain_262	2
scaffold_27	starts_in_intron	5433006	5433006	-	asmbl_37007	none	blat.proc3825162.chain_2201	1	STRG.28961.1,blat.proc3825162.chain_2202,blat.proc3825162.chain_2203	3
scaffold_10	alt_acceptor	16532617	16532618	+	asmbl_3723	none	STRG.13128.3	1	STRG.13128.1,blat.proc3825170.chain_1651,blat.proc3825170.chain_1653	3
scaffold_12	alternate_exon	7651199	7651608	+	asmbl_7776	none	STRG.14846.1,Trinity_GG_25513_c0_g2_i1,blat.proc3825170.chain_3387	3	STRG.14846.2,Trinity_GG_25513_c0_g2_i2,blat.proc3825170.chain_3386	3
scaffold_27	retained_intron	2786649	2786780	+	asmbl_36110	none	Trinity_GG_33192_c1_g1_i6,blat.proc3825178.chain_1828	2	STRG.28759.1,blat.proc3825178.chain_1827,blat.proc3825178.chain_1829,blat.proc3825178.chain_1830	4
scaffold_11	retained_intron	8723372	8723845	+	asmbl_5830,asmbl_5831	none	STRG.13892.3,STRG.13892.4,Trinity_GG_24977_c0_g1_i3,Trinity_GG_24977_c0_g1_i5,blat.proc3825170.chain_2459,blat.proc3825170.chain_2461	6	STRG.13892.1,STRG.13892.2,Trinity_GG_24977_c0_g1_i2,blat.proc3825170.chain_2457	4
scaffold_9	retained_exon	3665717	3665928	+	asmbl_53908	none	blat.proc3825168.chain_3493	1	STRG.10971.1,Trinity_GG_23413_c0_g1_i4,blat.proc3825168.chain_3495	3
scaffold_17	spliced_intron	9004638	9006457	+	asmbl_19056,asmbl_19058	none	STRG.20525.3,blat.proc3825174.chain_1322	2	blat.proc3825174.chain_1323	1
scaffold_9	ends_in_intron	5532320	5532320	+	asmbl_54051	none	STRG.11135.2	1	STRG.11135.1,Trinity_GG_23507_c0_g2_i2,blat.proc3825168.chain_3643	3
scaffold_16	spliced_intron	810291	810378	-	asmbl_16907,asmbl_16908,asmbl_16911,asmbl_16912	none	STRG.19064.1,STRG.19064.2,STRG.19064.3,blat.proc3825158.chain_128,blat.proc3825158.chain_130,blat.proc3825158.chain_132	6	blat.proc3825158.chain_129,blat.proc3825158.chain_131	2
scaffold_12	alt_acceptor	9538293	9538294	-	asmbl_8678	none	STRG.14935.2	1	STRG.14935.1,blat.proc3825154.chain_3443	2
scaffold_8	skipped_exon	739423	740608	+	asmbl_52663	none	STRG.9729.1	1	blat.proc3825168.chain_2237	1
scaffold_13	alternate_exon	6138113	6139181	-	asmbl_9773	none	STRG.15919.3,Trinity_GG_8952_c0_g1_i1,blat.proc3825156.chain_808	3	STRG.15919.2	1
scaffold_7	alt_acceptor	15247935	15247936	+	asmbl_50421	none	STRG.9540.2,blat.proc3825168.chain_2111	2	STRG.9540.1,STRG.9540.3,blat.proc3825168.chain_2110,blat.proc3825168.chain_2112	4
scaffold_16	alternate_exon	1779585	1779787	+	asmbl_16086	none	STRG.19102.2,Trinity_GG_27789_c0_g1_i4,blat.proc3825174.chain_20	3	STRG.19102.3,blat.proc3825174.chain_21	2
scaffold_4	skipped_exon	6704324	6705681	+	asmbl_41424	none	STRG.4531.3	1	STRG.4531.1,STRG.4531.2,blat.proc3825166.chain_909	3
scaffold_7	retained_intron	2852620	2854421	-	asmbl_50771,asmbl_50772	none	STRG.8713.2,STRG.8713.4,Trinity_GG_4932_c0_g3_i1,Trinity_GG_4932_c1_g1_i1,blat.proc3825152.chain_1112,blat.proc3825152.chain_1113,blat.proc3825152.chain_1114	7	STRG.8713.3,blat.proc3825152.chain_1111	2
scaffold_28	alt_donor	4203363	4203364	+	asmbl_37520	none	STRG.29616.1	1	STRG.29616.2	1
scaffold_6	alternate_exon	885370	886855	-	asmbl_48088	none	STRG.7159.1	1	STRG.7159.2,STRG.7159.3	2
scaffold_11	ends_in_intron	5868480	5868480	-	asmbl_6688	none	blat.proc3825154.chain_2234	1	STRG.13653.2,STRG.13653.3,blat.proc3825154.chain_2233,blat.proc3825154.chain_2236	4
scaffold_14	starts_in_intron	8208653	8208653	-	asmbl_13250	none	blat.proc3825156.chain_2009	1	STRG.17233.1,blat.proc3825156.chain_2008	2
scaffold_13	spliced_intron	5841697	5842514	-	asmbl_9731	none	STRG.15894.1,blat.proc3825156.chain_773	2	blat.proc3825156.chain_771	1
scaffold_18	spliced_intron	13804460	13804704	+	asmbl_21036,asmbl_21037,asmbl_21040	none	STRG.21822.1,Trinity_GG_29370_c0_g1_i2,Trinity_GG_29370_c0_g1_i3,blat.proc3825174.chain_2835,blat.proc3825174.chain_2836,blat.proc3825174.chain_2838	6	Trinity_GG_29370_c0_g1_i1,blat.proc3825174.chain_2837,blat.proc3825174.chain_2839	3
scaffold_15	alternate_exon	13655375	13655535	-	asmbl_14649	none	STRG.18793.3,blat.proc3825156.chain_3645	2	STRG.18793.1	1
scaffold_4	alt_donor	13113610	13113611	-	asmbl_42971,asmbl_42972	none	STRG.4950.1,STRG.4950.2,blat.proc3825150.chain_1129,blat.proc3825150.chain_1130	4	STRG.4950.3,blat.proc3825150.chain_1128	2
scaffold_13	retained_exon	10434518	10434625	+	asmbl_11239	none	STRG.16250.2,blat.proc3825172.chain_977	2	STRG.16250.1,STRG.16250.3,STRG.16250.4,blat.proc3825172.chain_975,blat.proc3825172.chain_976	5
scaffold_19	skipped_exon	5643838	5644201	-	asmbl_22182	none	blat.proc3825158.chain_2906	1	blat.proc3825158.chain_2907	1
scaffold_14	ends_in_intron	207831	207831	-	asmbl_12800	none	Trinity_GG_9359_c1_g2_i1,blat.proc3825156.chain_1544	2	STRG.16713.1,STRG.16713.2,STRG.16713.4,blat.proc3825156.chain_1540,blat.proc3825156.chain_1541,blat.proc3825156.chain_1542	6
scaffold_13	alt_acceptor	381874	381875	-	asmbl_9323,asmbl_9326	none	STRG.15437.1,STRG.15437.3,blat.proc3825156.chain_263	3	STRG.15437.4,blat.proc3825156.chain_262	2
scaffold_10	spliced_intron	556785	556911	-	asmbl_3967	none	STRG.11937.1,Trinity_GG_6599_c0_g1_i2,blat.proc3825154.chain_399	3	STRG.11937.2,blat.proc3825154.chain_398	2
scaffold_10	ends_in_intron	332646	332646	-	asmbl_3934	none	STRG.11918.2	1	STRG.11918.1,blat.proc3825154.chain_442	2
scaffold_21	alt_acceptor	6507861	6507862	+	asmbl_28655	none	STRG.24172.2,blat.proc3825176.chain_1377	2	STRG.24172.1,STRG.24172.3,blat.proc3825176.chain_1378	3
scaffold_11	spliced_intron	4744838	4745192	-	asmbl_6622,asmbl_6624,asmbl_6626,asmbl_6627	none	STRG.13567.2,blat.proc3825154.chain_2162,blat.proc3825154.chain_2163,blat.proc3825154.chain_2166,blat.proc3825154.chain_2167	5	blat.proc3825154.chain_2164	1
scaffold_2	retained_intron	16085317	16085688	-	asmbl_23669,asmbl_23671	none	blat.proc3825148.chain_2435,blat.proc3825148.chain_2437	2	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2436,blat.proc3825148.chain_2438	4
scaffold_1	alt_donor	4027754	4027755	-	asmbl_177	none	STRG.248.2,blat.proc3825148.chain_223	2	STRG.248.1,blat.proc3825148.chain_224	2
scaffold_27	ends_in_intron	4758070	4758070	+	asmbl_36317	none	STRG.28914.3	1	STRG.28914.1	1
scaffold_6	alternate_exon	13221402	13221922	+	asmbl_47504	none	blat.proc3825168.chain_571,blat.proc3825168.chain_575	2	STRG.8084.3,blat.proc3825168.chain_572,blat.proc3825168.chain_573	3
scaffold_5	alt_donor	1548585	1548586	-	asmbl_43861	none	STRG.5712.1	1	STRG.5712.2	1
scaffold_5	ends_in_intron	11802057	11802057	+	asmbl_45759	none	blat.proc3825166.chain_2658	1	STRG.6437.1,blat.proc3825166.chain_2657	2
scaffold_22	alternate_exon	6131157	6132201	+	asmbl_30100,asmbl_30104	none	STRG.24968.7,Trinity_GG_31147_c0_g1_i4,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2123,blat.proc3825176.chain_2124	5	STRG.24968.1,blat.proc3825176.chain_2118	2
scaffold_19	retained_intron	11489772	11489947	+	asmbl_21705	none	Trinity_GG_29743_c0_g1_i1,blat.proc3825174.chain_3482	2	STRG.22487.1,Trinity_GG_29743_c0_g1_i3,Trinity_GG_29743_c0_g1_i4,blat.proc3825174.chain_3480,blat.proc3825174.chain_3481	5
scaffold_1	retained_intron	12422430	12422995	+	asmbl_2216	none	STRG.857.1,Trinity_GG_17798_c0_g1_i1,Trinity_GG_17798_c0_g1_i3,blat.proc3825164.chain_939,blat.proc3825164.chain_940	5	STRG.857.2	1
scaffold_9	retained_exon	15589170	15589184	+	asmbl_54580	none	blat.proc3825170.chain_530	1	STRG.11750.1,blat.proc3825170.chain_531,blat.proc3825170.chain_532	3
scaffold_10	spliced_intron	8952261	8952966	+	asmbl_3347	none	STRG.12645.1,Trinity_GG_24232_c0_g1_i1,blat.proc3825170.chain_1159	3	blat.proc3825170.chain_1160	1
scaffold_16	retained_intron	14512399	14512482	-	asmbl_17449	none	blat.proc3825158.chain_877	1	STRG.19830.1,blat.proc3825158.chain_874,blat.proc3825158.chain_875	3
scaffold_15	spliced_intron	2718469	2718646	-	asmbl_14035	none	STRG.18060.1,blat.proc3825156.chain_2831	2	STRG.18060.2,Trinity_GG_10124_c0_g1_i1,blat.proc3825156.chain_2830	3
scaffold_9	alt_donor	11876548	11876549	+	asmbl_54388	none	Trinity_GG_23736_c0_g1_i2,blat.proc3825170.chain_329	2	STRG.11509.1	1
scaffold_5	alt_acceptor	18560841	18560842	+	asmbl_46266,asmbl_46267,asmbl_46269	none	STRG.6987.2,STRG.6987.3,STRG.6987.4,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i3,blat.proc3825166.chain_3149,blat.proc3825166.chain_3155	8	STRG.6987.1,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i4,Trinity_GG_21132_c0_g1_i7,Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3153,blat.proc3825166.chain_3154	8
scaffold_16	alternate_exon	948232	948380	-	asmbl_16919	none	STRG.19070.1,Trinity_GG_10710_c0_g1_i2,blat.proc3825158.chain_233	3	Trinity_GG_10710_c0_g1_i1,blat.proc3825158.chain_232	2
scaffold_17	retained_exon	8605674	8605727	-	asmbl_18103	none	STRG.20472.1,Trinity_GG_11505_c1_g2_i1,blat.proc3825158.chain_1495	3	STRG.20472.2,Trinity_GG_11505_c1_g1_i1,blat.proc3825158.chain_1494	3
scaffold_1	alt_acceptor	849736	849737	+	asmbl_1420	none	STRG.42.5,Trinity_GG_17343_c0_g1_i1,blat.proc3825164.chain_126	3	STRG.42.1,Trinity_GG_17343_c0_g1_i2,blat.proc3825164.chain_125	3
scaffold_8	spliced_intron	17284349	17284435	-	asmbl_52438	none	STRG.10651.1,blat.proc3825152.chain_2859	2	blat.proc3825152.chain_2857	1
scaffold_3	retained_intron	16072508	16072620	+	asmbl_40606	none	blat.proc3825166.chain_375	1	STRG.3889.1,STRG.3889.2,blat.proc3825166.chain_374,blat.proc3825166.chain_376	4
scaffold_10	alternate_exon	16073286	16073356	+	asmbl_3704	none	STRG.13091.2,Trinity_GG_24530_c0_g1_i1,blat.proc3825170.chain_1694	3	STRG.13091.1	1
scaffold_20	starts_in_intron	10857617	10857617	+	asmbl_26998	none	Trinity_GG_30381_c0_g1_i4,blat.proc3825176.chain_807	2	STRG.23612.1,Trinity_GG_30381_c0_g1_i1,Trinity_GG_30381_c0_g1_i3,blat.proc3825176.chain_804,blat.proc3825176.chain_805,blat.proc3825176.chain_806	6
scaffold_20	retained_exon	1618621	1618742	-	asmbl_25591	none	STRG.22893.1	1	STRG.22893.2,STRG.22893.4	2
scaffold_24	alt_donor	10485848	10485849	+	asmbl_32571,asmbl_32574,asmbl_32575	none	STRG.27019.1,Trinity_GG_32229_c1_g1_i3,Trinity_GG_32229_c1_g1_i4,Trinity_GG_32229_c1_g1_i8,blat.proc3825178.chain_198,blat.proc3825178.chain_199,blat.proc3825178.chain_201	7	STRG.27019.2,STRG.27019.3,Trinity_GG_32229_c1_g1_i2,Trinity_GG_32229_c1_g1_i5,blat.proc3825178.chain_202,blat.proc3825178.chain_203	6
scaffold_11	alt_acceptor	5104545	5104546	+	asmbl_5541	none	STRG.13598.1,blat.proc3825170.chain_2126	2	STRG.13598.2,blat.proc3825170.chain_2125	2
scaffold_15	starts_in_intron	12222015	12222015	+	asmbl_15549	none	blat.proc3825172.chain_3306	1	STRG.18680.1,blat.proc3825172.chain_3307	2
scaffold_14	ends_in_intron	5452588	5452588	+	asmbl_12013	none	blat.proc3825172.chain_1724	1	STRG.17020.1,Trinity_GG_26638_c0_g2_i2,blat.proc3825172.chain_1725,blat.proc3825172.chain_1726	4
scaffold_10	starts_in_intron	5860141	5860141	-	asmbl_4393,asmbl_4398,asmbl_4399	none	STRG.12409.1,Trinity_GG_6938_c0_g2_i1,blat.proc3825154.chain_983,blat.proc3825154.chain_984,blat.proc3825154.chain_985	5	STRG.12409.2,STRG.12409.3	2
scaffold_9	alternate_exon	5757441	5760712	-	asmbl_55028	none	STRG.11147.1,Trinity_GG_6190_c1_g1_i1,blat.proc3825152.chain_3402	3	STRG.11147.2	1
scaffold_21	starts_in_intron	1694033	1694033	+	asmbl_28356	none	Trinity_GG_30533_c0_g1_i3,blat.proc3825176.chain_1074	2	STRG.23822.1,blat.proc3825176.chain_1071,blat.proc3825176.chain_1072	3
scaffold_24	skipped_exon	4280796	4281253	+	asmbl_32179	none	STRG.26586.3	1	STRG.26586.2,blat.proc3825176.chain_3528	2
scaffold_24	alt_acceptor	6780710	6780711	-	asmbl_32976	none	STRG.26733.3	1	STRG.26733.1,STRG.26733.2,STRG.26733.4	3
scaffold_9	retained_intron	12305541	12305790	+	asmbl_54429	none	STRG.11553.2,blat.proc3825170.chain_376,blat.proc3825170.chain_377	3	STRG.11553.1,blat.proc3825170.chain_375	2
scaffold_26	spliced_intron	10119226	10119413	-	asmbl_35814,asmbl_35816,asmbl_35817,asmbl_35818,asmbl_35821	none	STRG.28530.1,STRG.28530.2,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,Trinity_GG_15946_c0_g1_i8,blat.proc3825162.chain_1709,blat.proc3825162.chain_1710,blat.proc3825162.chain_1712,blat.proc3825162.chain_1715	10	STRG.28530.3	1
scaffold_7	alt_donor	8070034	8070035	+	asmbl_49951	none	STRG.9047.1,blat.proc3825168.chain_1525	2	STRG.9047.2,blat.proc3825168.chain_1526	2
scaffold_10	starts_in_intron	208941	208941	-	asmbl_3924	none	blat.proc3825154.chain_432	1	STRG.11913.1,STRG.11913.2,Trinity_GG_6621_c0_g1_i1,blat.proc3825154.chain_430,blat.proc3825154.chain_431,blat.proc3825154.chain_433	6
scaffold_10	alt_acceptor	12680994	12680995	+	asmbl_3538	none	STRG.12860.2	1	STRG.12860.1,STRG.12860.3,Trinity_GG_24411_c0_g1_i1,Trinity_GG_24411_c0_g1_i2	4
scaffold_12	alt_acceptor	6420184	6420185	+	asmbl_7682,asmbl_7683	none	STRG.14753.2,STRG.14753.3	2	STRG.14753.1,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274,blat.proc3825170.chain_3275	4
scaffold_27	starts_in_intron	3644951	3644951	-	asmbl_36915	none	blat.proc3825162.chain_2073	1	STRG.28834.1,STRG.28834.2,Trinity_GG_16157_c0_g1_i2,blat.proc3825162.chain_2072,blat.proc3825162.chain_2074	5
scaffold_28	spliced_intron	5024248	5024400	+	asmbl_37563,asmbl_37564	none	STRG.29654.1,STRG.29654.2,blat.proc3825178.chain_2770	3	STRG.29654.4,Trinity_GG_33717_c2_g1_i2,blat.proc3825178.chain_2769	3
scaffold_6	retained_intron	126870	126945	-	asmbl_48024	none	STRG.7076.1	1	blat.proc3825150.chain_3188,blat.proc3825150.chain_3189	2
scaffold_26	alt_acceptor	6301383	6301384	-	asmbl_35669	none	STRG.28327.3	1	STRG.28327.1,STRG.28327.2,blat.proc3825162.chain_1558,blat.proc3825162.chain_1559,blat.proc3825162.chain_1560	5
scaffold_13	alternate_exon	3705936	3706231	-	asmbl_9562	none	STRG.15688.1	1	STRG.15688.3,STRG.15688.4	2
scaffold_1	alt_acceptor	14528856	14528857	-	asmbl_934	none	blat.proc3825148.chain_1041	1	STRG.1052.1,blat.proc3825148.chain_1042	2
scaffold_2	alt_donor	9140292	9140293	-	asmbl_23352,asmbl_23353	none	blat.proc3825148.chain_2180,blat.proc3825148.chain_2181	2	STRG.2159.1,STRG.2159.2	2
scaffold_11	spliced_intron	9693927	9694016	-	asmbl_6955	none	blat.proc3825154.chain_2534	1	STRG.13992.2,STRG.13992.3,STRG.13992.5,blat.proc3825154.chain_2533	4
scaffold_2	retained_intron	15267111	15267282	+	asmbl_24999,asmbl_25002	none	blat.proc3825164.chain_2603,blat.proc3825164.chain_2606	2	STRG.2485.1,STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	10
scaffold_6	retained_intron	13657677	13658079	-	asmbl_48927	none	STRG.8106.1,blat.proc3825152.chain_524	2	blat.proc3825152.chain_525	1
scaffold_22	alternate_exon	11344571	11344677	-	asmbl_29666	none	blat.proc3825160.chain_2648	1	STRG.25465.2,Trinity_GG_14255_c0_g1_i1,blat.proc3825160.chain_2647,blat.proc3825160.chain_2649	4
scaffold_19	retained_intron	8805742	8805817	+	asmbl_21558	none	STRG.22329.3	1	STRG.22329.2	1
scaffold_7	retained_intron	1235216	1235301	+	asmbl_49593,asmbl_49603	none	STRG.8637.4,blat.proc3825168.chain_1072	2	blat.proc3825168.chain_1068	1
scaffold_18	retained_intron	9258671	9259564	-	asmbl_20062	none	STRG.21569.3	1	STRG.21569.4,Trinity_GG_12060_c0_g1_i3,blat.proc3825158.chain_2486	3
scaffold_22	retained_intron	1013479	1013787	-	asmbl_29142	none	Trinity_GG_13836_c0_g1_i3,blat.proc3825160.chain_1947	2	STRG.24755.1,blat.proc3825160.chain_1945	2
scaffold_15	skipped_exon	345797	347489	+	asmbl_14960	none	STRG.17885.2	1	STRG.17885.1,blat.proc3825172.chain_2607	2
scaffold_2	spliced_intron	18610276	18610519	-	asmbl_23802	none	STRG.2736.2	1	STRG.2736.1,Trinity_GG_1475_c0_g1_i2,blat.proc3825148.chain_2625	3
scaffold_13	skipped_exon	15672407	15672506	+	asmbl_11530	none	STRG.16612.5	1	STRG.16612.3	1
scaffold_13	alt_donor	16190528	16190529	-	asmbl_10278	none	STRG.16666.1,Trinity_GG_9290_c0_g1_i1,blat.proc3825156.chain_1426	3	STRG.16666.2	1
scaffold_1	retained_intron	14251914	14252304	-	asmbl_876	none	STRG.1015.1,blat.proc3825148.chain_1008	2	STRG.1015.2	1
scaffold_15	skipped_exon	3713137	3713705	-	asmbl_14117	none	STRG.18138.2	1	STRG.18138.1,blat.proc3825156.chain_2994	2
scaffold_2	starts_in_intron	15699265	15699265	+	asmbl_25074	none	blat.proc3825164.chain_2753	1	STRG.2526.1,STRG.2526.2,blat.proc3825164.chain_2754,blat.proc3825164.chain_2755	4
scaffold_14	retained_intron	1127545	1127620	+	asmbl_11810	none	STRG.16776.2,Trinity_GG_26533_c0_g1_i1,blat.proc3825172.chain_1530	3	STRG.16776.1,Trinity_GG_26533_c0_g1_i2,blat.proc3825172.chain_1529	3
scaffold_10	spliced_intron	12895228	12895356	-	asmbl_4837,asmbl_4839	none	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1475	3	blat.proc3825154.chain_1473	1
scaffold_6	alternate_exon	17188669	17189014	-	asmbl_49181,asmbl_49182	none	STRG.8430.1,Trinity_GG_4809_c0_g1_i2,Trinity_GG_4809_c0_g1_i3,blat.proc3825152.chain_868,blat.proc3825152.chain_869	5	STRG.8430.2,Trinity_GG_4809_c0_g1_i1,blat.proc3825152.chain_870	3
scaffold_18	alt_acceptor	7947576	7947577	-	asmbl_19990,asmbl_19991,asmbl_19992	none	STRG.21494.2,STRG.21494.3,STRG.21494.4,blat.proc3825158.chain_2402,blat.proc3825158.chain_2403,blat.proc3825158.chain_2404	6	STRG.21494.1	1
scaffold_20	spliced_intron	11695106	11695430	-	asmbl_26187	none	STRG.23682.1,blat.proc3825160.chain_772	2	blat.proc3825160.chain_770	1
scaffold_3	skipped_exon	14571129	14573597	-	asmbl_39397,asmbl_39398,asmbl_39401	none	STRG.3797.1,STRG.3797.2,blat.proc3825148.chain_3740,blat.proc3825148.chain_3741,blat.proc3825148.chain_3742	5	STRG.3797.3	1
scaffold_27	alt_donor	2884398	2884399	-	asmbl_36867	none	STRG.28772.2	1	STRG.28772.1,STRG.28772.3,blat.proc3825162.chain_2014,blat.proc3825162.chain_2015	4
scaffold_13	spliced_intron	1230177	1230306	+	asmbl_10549	none	STRG.15494.3	1	STRG.15494.1,STRG.15494.2,Trinity_GG_25867_c1_g1_i2,Trinity_GG_25867_c1_g1_i3,blat.proc3825172.chain_313,blat.proc3825172.chain_314	6
scaffold_17	alt_acceptor	9089407	9089408	-	asmbl_18149	none	STRG.20538.1	1	STRG.20538.2,STRG.20538.3,STRG.20538.4,blat.proc3825158.chain_1560,blat.proc3825158.chain_1561	5
scaffold_4	ends_in_intron	14104634	14104634	+	asmbl_41845	none	blat.proc3825166.chain_1419	1	STRG.5030.1	1
scaffold_13	ends_in_intron	276683	276683	+	asmbl_10472	none	blat.proc3825172.chain_195	1	STRG.15434.1,STRG.15434.2,STRG.15434.3,blat.proc3825172.chain_196,blat.proc3825172.chain_197,blat.proc3825172.chain_198	6
scaffold_18	spliced_intron	12603092	12603275	-	asmbl_20157	none	STRG.21720.2,blat.proc3825158.chain_2615	2	STRG.21720.1,blat.proc3825158.chain_2616	2
scaffold_18	alt_donor	4633019	4633020	-	asmbl_19813	none	STRG.21251.1,blat.proc3825158.chain_2135	2	blat.proc3825158.chain_2136	1
scaffold_1	ends_in_intron	5430587	5430587	-	asmbl_264	none	blat.proc3825148.chain_246	1	STRG.341.1	1
scaffold_15	retained_intron	4753368	4753541	+	asmbl_15169,asmbl_15170	none	STRG.18193.2,Trinity_GG_27290_c0_g1_i1,blat.proc3825172.chain_2870,blat.proc3825172.chain_2871	4	STRG.18193.1,blat.proc3825172.chain_2872	2
scaffold_20	alternate_exon	5547631	5549902	-	asmbl_25773	none	STRG.23182.3	1	STRG.23182.4,blat.proc3825160.chain_219	2
scaffold_3	retained_exon	18376956	18377274	-	asmbl_39621	none	STRG.4043.1,blat.proc3825150.chain_222	2	STRG.4043.2	1
scaffold_1	spliced_intron	5220774	5220883	-	asmbl_248,asmbl_249	none	STRG.330.1,STRG.330.2,blat.proc3825148.chain_239,blat.proc3825148.chain_240	4	STRG.330.3	1
scaffold_25	alt_donor	3612869	3612870	-	asmbl_34142	none	STRG.27305.2	1	STRG.27305.1,blat.proc3825162.chain_671,blat.proc3825162.chain_672	3
scaffold_23	skipped_exon	10975457	10977281	+	asmbl_31904	none	STRG.26307.2	1	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_7	retained_intron	4915758	4915841	+	asmbl_49759	none	STRG.8836.1,blat.proc3825168.chain_1316	2	STRG.8836.4	1
scaffold_4	spliced_intron	5215330	5215445	-	asmbl_42566	none	STRG.4411.1,blat.proc3825150.chain_636	2	STRG.4411.2,blat.proc3825150.chain_637	2
scaffold_17	starts_in_intron	8250459	8250459	+	asmbl_18961	none	Trinity_GG_28476_c0_g1_i2,blat.proc3825174.chain_1221	2	blat.proc3825174.chain_1220	1
scaffold_20	retained_intron	1614927	1615776	-	asmbl_25589,asmbl_25590,asmbl_25591	none	STRG.22893.1,STRG.22893.2,STRG.22893.3,Trinity_GG_12768_c0_g1_i1,Trinity_GG_12768_c0_g1_i2,Trinity_GG_12768_c2_g1_i1,blat.proc3825158.chain_3723,blat.proc3825158.chain_3724,blat.proc3825158.chain_3726	9	STRG.22893.4	1
scaffold_27	alt_acceptor	937872	937873	-	asmbl_36725	none	STRG.28589.2	1	STRG.28589.1,Trinity_GG_16003_c0_g1_i1,blat.proc3825162.chain_1845	3
scaffold_15	starts_in_intron	7183837	7183837	-	asmbl_14275,asmbl_14278	none	STRG.18310.1,STRG.18310.2,blat.proc3825156.chain_3040,blat.proc3825156.chain_3043	4	STRG.18310.4,blat.proc3825156.chain_3041	2
scaffold_5	retained_intron	17210617	17210897	-	asmbl_44799,asmbl_44800	none	STRG.6894.2,blat.proc3825150.chain_3043	2	STRG.6894.1,blat.proc3825150.chain_3039,blat.proc3825150.chain_3040,blat.proc3825150.chain_3041,blat.proc3825150.chain_3042	5
scaffold_11	alternate_exon	3092415	3092987	+	asmbl_5401	none	STRG.13431.3	1	STRG.13431.2,blat.proc3825170.chain_1961	2
scaffold_13	skipped_exon	2969960	2972943	+	asmbl_10642	none	STRG.15597.2,blat.proc3825172.chain_358	2	STRG.15597.1,blat.proc3825172.chain_359	2
scaffold_4	alt_donor	3955897	3955898	-	asmbl_42470	none	STRG.4303.2,blat.proc3825150.chain_526	2	STRG.4303.1,blat.proc3825150.chain_527	2
scaffold_14	retained_exon	3551904	3551989	-	asmbl_13022,asmbl_13023	none	STRG.16946.1,STRG.16946.2,blat.proc3825156.chain_1729,blat.proc3825156.chain_1730	4	STRG.16946.3	1
scaffold_16	retained_intron	1237437	1237543	-	asmbl_16929	none	blat.proc3825158.chain_218	1	STRG.19083.1,blat.proc3825158.chain_219,blat.proc3825158.chain_220,blat.proc3825158.chain_221	4
scaffold_1	alt_donor	1216857	1216858	-	asmbl_51,asmbl_52	none	STRG.65.3,blat.proc3825148.chain_70	2	STRG.65.1,Trinity_GG_36_c0_g2_i1,blat.proc3825148.chain_71	3
scaffold_17	skipped_exon	9487827	9488129	+	asmbl_19092,asmbl_19096	none	STRG.20572.1,blat.proc3825174.chain_1444,blat.proc3825174.chain_1446	3	STRG.20572.2,STRG.20572.3,blat.proc3825174.chain_1445,blat.proc3825174.chain_1449,blat.proc3825174.chain_1450	5
scaffold_3	alternate_exon	7587445	7592544	+	asmbl_40167,asmbl_40170	none	STRG.3351.1,blat.proc3825164.chain_3629,blat.proc3825164.chain_3630	3	Trinity_GG_19221_c0_g1_i6,blat.proc3825164.chain_3628	2
scaffold_15	spliced_intron	7840903	7841007	+	asmbl_15304,asmbl_15306	none	STRG.18362.1,blat.proc3825172.chain_3049,blat.proc3825172.chain_3050	3	blat.proc3825172.chain_3048	1
scaffold_26	skipped_exon	4331957	4333629	-	asmbl_35543,asmbl_35544	none	STRG.28149.2,STRG.28149.5	2	STRG.28149.1,STRG.28149.4	2
scaffold_7	retained_exon	7245092	7245163	+	asmbl_49912	none	STRG.8986.1,blat.proc3825168.chain_1487	2	STRG.8986.2,blat.proc3825168.chain_1488	2
scaffold_20	spliced_intron	11600743	11600915	-	asmbl_26168	none	STRG.23678.2	1	STRG.23678.1	1
scaffold_13	spliced_intron	13973739	13973853	+	asmbl_11415,asmbl_11416	none	blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	2	Trinity_GG_26313_c0_g1_i6	1
scaffold_17	spliced_intron	14040943	14041125	+	asmbl_19381	none	STRG.20874.3	1	STRG.20874.1,blat.proc3825174.chain_1785	2
scaffold_4	retained_exon	13114623	13114670	-	asmbl_42971,asmbl_42974	none	STRG.4950.2,STRG.4950.3,blat.proc3825150.chain_1129	3	STRG.4950.1,blat.proc3825150.chain_1128,blat.proc3825150.chain_1130	3
scaffold_23	spliced_intron	2326610	2326740	-	asmbl_30734	none	blat.proc3825160.chain_2870	1	STRG.25702.1,Trinity_GG_14377_c0_g1_i2,blat.proc3825160.chain_2871	3
scaffold_20	ends_in_intron	3469203	3469203	-	asmbl_25696	none	Trinity_GG_12866_c0_g1_i2,blat.proc3825160.chain_137	2	STRG.23065.1,blat.proc3825160.chain_136	2
scaffold_15	alt_donor	15413602	15413603	+	asmbl_15780,asmbl_15784,asmbl_15785	none	STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3609	3	STRG.18953.3,blat.proc3825172.chain_3610	2
scaffold_27	alternate_exon	1971563	1972144	-	asmbl_36797	none	STRG.28678.2	1	STRG.28678.3	1
scaffold_2	retained_intron	18591305	18591383	-	asmbl_23799	none	STRG.2733.2,blat.proc3825148.chain_2622	2	STRG.2733.1,blat.proc3825148.chain_2621	2
scaffold_4	alt_acceptor	16569936	16569937	-	asmbl_43196	none	STRG.5232.2	1	STRG.5232.1,blat.proc3825150.chain_1414	2
scaffold_5	spliced_intron	15764229	15764723	+	asmbl_46014,asmbl_46016,asmbl_46017,asmbl_46018,asmbl_46019,asmbl_46020	none	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	7	blat.proc3825166.chain_2914	1
scaffold_8	alt_acceptor	9001466	9001467	+	asmbl_53046	none	STRG.10156.1,Trinity_GG_22923_c0_g1_i3,blat.proc3825168.chain_2651	3	STRG.10156.2,Trinity_GG_22923_c0_g1_i1,blat.proc3825168.chain_2650	3
scaffold_25	starts_in_intron	800393	800393	-	asmbl_34003	none	STRG.27136.2	1	STRG.27136.1,STRG.27136.3,blat.proc3825162.chain_511	3
scaffold_10	starts_in_intron	6071796	6071796	-	asmbl_4430	none	STRG.12445.4	1	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033,blat.proc3825154.chain_1034	10
scaffold_11	starts_in_intron	11941970	11941970	-	asmbl_7043	none	STRG.14177.3	1	STRG.14177.4	1
scaffold_7	ends_in_intron	10407369	10407369	+	asmbl_50119	none	blat.proc3825168.chain_1676	1	STRG.9223.2	1
scaffold_3	spliced_intron	6189213	6189316	-	asmbl_38914	none	blat.proc3825148.chain_3124	1	STRG.3266.4	1
scaffold_13	retained_intron	16006876	16007020	-	asmbl_10259	none	Trinity_GG_9305_c0_g1_i1,blat.proc3825156.chain_1451	2	STRG.16639.1	1
scaffold_9	ends_in_intron	9472815	9472815	-	asmbl_55186	none	blat.proc3825152.chain_3569	1	STRG.11310.1,STRG.11310.3,blat.proc3825152.chain_3567	3
scaffold_21	spliced_intron	731085	731446	+	asmbl_28289,asmbl_28291,asmbl_28293,asmbl_28294	none	STRG.23764.1,STRG.23764.2,STRG.23764.4,STRG.23764.5,Trinity_GG_30474_c0_g1_i2,blat.proc3825176.chain_969	6	STRG.23764.3,Trinity_GG_30474_c0_g3_i1,blat.proc3825176.chain_972	3
scaffold_5	retained_intron	15767010	15767201	+	asmbl_46024	none	blat.proc3825166.chain_2919	1	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2920,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	9
scaffold_5	retained_exon	8566223	8566305	+	asmbl_45554	none	STRG.6199.1,blat.proc3825166.chain_2300	2	STRG.6199.2	1
scaffold_10	alternate_exon	11108752	11108940	+	asmbl_3453	none	blat.proc3825170.chain_1377	1	STRG.12779.1,blat.proc3825170.chain_1378	2
scaffold_13	ends_in_intron	5460358	5460358	+	asmbl_10851	none	blat.proc3825172.chain_520	1	STRG.15841.1,STRG.15841.2,blat.proc3825172.chain_518,blat.proc3825172.chain_519	4
scaffold_8	spliced_intron	16230070	16230333	+	asmbl_53437,asmbl_53439	none	STRG.10614.1,STRG.10614.2,Trinity_GG_23224_c0_g1_i2,blat.proc3825168.chain_3188	4	STRG.10614.3,Trinity_GG_23224_c0_g1_i3,Trinity_GG_23224_c0_g1_i4,blat.proc3825168.chain_3186,blat.proc3825168.chain_3190	5
scaffold_15	spliced_intron	13972358	13972548	+	asmbl_15660,asmbl_15662	none	STRG.18831.1,Trinity_GG_27636_c0_g1_i2,blat.proc3825172.chain_3459,blat.proc3825172.chain_3460	4	Trinity_GG_27636_c0_g1_i1,blat.proc3825172.chain_3458	2
scaffold_5	alternate_exon	4774524	4774657	-	asmbl_44009	none	STRG.5941.2,blat.proc3825150.chain_2142	2	STRG.5941.1,STRG.5941.3,STRG.5941.4	3
scaffold_17	retained_intron	7049932	7050209	+	asmbl_18888	none	STRG.20370.2,blat.proc3825174.chain_1224	2	STRG.20370.1,STRG.20370.3,blat.proc3825174.chain_1223,blat.proc3825174.chain_1225,blat.proc3825174.chain_1226,blat.proc3825174.chain_1227	6
scaffold_11	starts_in_intron	4673035	4673035	-	asmbl_6613	none	Trinity_GG_7606_c0_g2_i2,blat.proc3825154.chain_2156	2	STRG.13564.1,STRG.13564.5,blat.proc3825154.chain_2155	3
scaffold_3	skipped_exon	16797210	16800128	-	asmbl_39515	none	STRG.3937.1,blat.proc3825150.chain_66	2	STRG.3937.3	1
scaffold_26	starts_in_intron	6372853	6372853	+	asmbl_35078	none	Trinity_GG_32973_c0_g1_i4,blat.proc3825178.chain_1421	2	STRG.28337.1,blat.proc3825178.chain_1418,blat.proc3825178.chain_1420	3
scaffold_17	alternate_exon	5691370	5691413	+	asmbl_18825	none	STRG.20272.1,Trinity_GG_28413_c0_g1_i1,blat.proc3825174.chain_1116	3	STRG.20272.3	1
scaffold_9	retained_intron	5757730	5758224	-	asmbl_55027	none	STRG.11147.4,Trinity_GG_6190_c0_g1_i4,Trinity_GG_6190_c0_g1_i5,Trinity_GG_6190_c0_g1_i8,blat.proc3825152.chain_3395,blat.proc3825152.chain_3400	6	STRG.11147.1,STRG.11147.3,blat.proc3825152.chain_3396	3
scaffold_7	retained_intron	13554150	13554287	-	asmbl_51312,asmbl_51313	none	blat.proc3825152.chain_1803,blat.proc3825152.chain_1804	2	STRG.9465.1,blat.proc3825152.chain_1802	2
scaffold_16	starts_in_intron	8039774	8039774	+	asmbl_16371	none	Trinity_GG_27912_c1_g1_i2,blat.proc3825174.chain_279	2	STRG.19448.1,STRG.19448.2,Trinity_GG_27912_c1_g1_i1,blat.proc3825174.chain_280	4
scaffold_25	spliced_intron	6525745	6525968	-	asmbl_34364	none	blat.proc3825162.chain_927	1	STRG.27535.1	1
scaffold_15	skipped_exon	15346021	15347989	+	asmbl_15753	none	STRG.18919.2	1	STRG.18919.1	1
scaffold_3	alt_donor	15787001	15787002	-	asmbl_39450,asmbl_39451	none	STRG.3859.2,STRG.3859.3	2	STRG.3859.1	1
scaffold_9	alt_donor	11876574	11876575	+	asmbl_54389	none	STRG.11509.1	1	Trinity_GG_23736_c0_g1_i2,blat.proc3825170.chain_329	2
scaffold_3	alt_donor	16133701	16133702	-	asmbl_39483	none	STRG.3897.1,blat.proc3825150.chain_75	2	STRG.3897.2	1
scaffold_13	alt_donor	14563618	14563619	-	asmbl_10195	none	STRG.16504.4,blat.proc3825156.chain_1272	2	STRG.16504.1,STRG.16504.3,STRG.16504.5,blat.proc3825156.chain_1270,blat.proc3825156.chain_1271	5
scaffold_11	alternate_exon	6710835	6713217	-	asmbl_6735,asmbl_6737,asmbl_6738	none	STRG.13716.1,STRG.13716.2,STRG.13716.4,Trinity_GG_7683_c1_g1_i1,blat.proc3825154.chain_2287,blat.proc3825154.chain_2289	6	STRG.13716.6,Trinity_GG_7683_c0_g1_i2,blat.proc3825154.chain_2288	3
scaffold_3	alternate_exon	18928847	18929356	+	asmbl_40748	none	STRG.4067.5,Trinity_GG_19584_c1_g1_i1,blat.proc3825166.chain_546	3	STRG.4067.1,STRG.4067.2,STRG.4067.3,STRG.4067.4	4
scaffold_1	starts_in_intron	1620479	1620479	+	asmbl_1500	none	STRG.113.5,Trinity_GG_17360_c0_g1_i1,blat.proc3825164.chain_166	3	STRG.113.1,Trinity_GG_17360_c0_g1_i2,Trinity_GG_17360_c0_g1_i5,blat.proc3825164.chain_165,blat.proc3825164.chain_167	5
scaffold_20	spliced_intron	5954529	5955148	-	asmbl_25807	none	STRG.23205.2,blat.proc3825160.chain_289	2	Trinity_GG_12946_c0_g1_i1,blat.proc3825160.chain_290	2
scaffold_19	retained_intron	11168462	11168662	+	asmbl_21671	none	blat.proc3825174.chain_3411	1	STRG.22450.1,blat.proc3825174.chain_3410	2
scaffold_17	starts_in_intron	8872640	8872640	-	asmbl_18129,asmbl_18130	none	STRG.20504.2,STRG.20504.3,blat.proc3825158.chain_1542	3	STRG.20504.1,blat.proc3825158.chain_1541	2
scaffold_13	spliced_intron	2274573	2277261	-	asmbl_9439	none	STRG.15548.1,blat.proc3825156.chain_398	2	STRG.15548.3,STRG.15548.4,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395	5
scaffold_16	alt_acceptor	7369494	7369495	+	asmbl_16335,asmbl_16336	none	STRG.19397.1,STRG.19397.2,blat.proc3825174.chain_330,blat.proc3825174.chain_331	4	STRG.19397.3,blat.proc3825174.chain_332	2
scaffold_22	ends_in_intron	566924	566924	-	asmbl_29109	none	Trinity_GG_13811_c0_g1_i2,blat.proc3825160.chain_1899	2	STRG.24707.1,blat.proc3825160.chain_1900	2
scaffold_1	retained_intron	9163929	9164016	-	asmbl_518	none	blat.proc3825148.chain_614	1	STRG.612.1,blat.proc3825148.chain_612,blat.proc3825148.chain_613	3
scaffold_13	alternate_exon	5281348	5281478	-	asmbl_9683	none	STRG.15825.2	1	STRG.15825.1,Trinity_GG_8886_c0_g1_i1,blat.proc3825156.chain_692	3
scaffold_13	alt_acceptor	11441505	11441506	-	asmbl_10092	none	STRG.16302.2,blat.proc3825156.chain_1180	2	STRG.16302.1,blat.proc3825156.chain_1181	2
scaffold_15	ends_in_intron	10770633	10770633	+	asmbl_15463	none	blat.proc3825172.chain_3210	1	STRG.18562.4,blat.proc3825172.chain_3211,blat.proc3825172.chain_3212,blat.proc3825172.chain_3213,blat.proc3825172.chain_3216	5
scaffold_5	retained_intron	6584076	6584215	-	asmbl_44107	none	blat.proc3825150.chain_2257	1	blat.proc3825150.chain_2258,blat.proc3825150.chain_2261	2
scaffold_23	spliced_intron	1399387	1399546	-	asmbl_30640	none	STRG.25613.1,blat.proc3825160.chain_2679	2	Trinity_GG_14278_c0_g1_i2,blat.proc3825160.chain_2680	2
scaffold_3030	retained_intron	488	641	-	asmbl_40915	none	STRG.30815.1,Trinity_GG_17288_c0_g1_i1,blat.proc3825164.chain_46	3	STRG.30815.2	1
scaffold_3	spliced_intron	10275684	10275967	+	asmbl_40248,asmbl_40251	none	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3	Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3730	2
scaffold_19	skipped_exon	3669778	3671440	-	asmbl_22116,asmbl_22122	none	STRG.22046.1,Trinity_GG_12309_c0_g1_i1,blat.proc3825158.chain_2893,blat.proc3825158.chain_2898	4	Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2894	2
scaffold_1	starts_in_intron	20451218	20451218	+	asmbl_2633	none	Trinity_GG_18126_c0_g1_i1	1	STRG.1393.2	1
scaffold_9	retained_intron	15746966	15746996	+	asmbl_54585	none	STRG.11762.1,Trinity_GG_23872_c1_g1_i1,blat.proc3825170.chain_546	3	STRG.11762.2	1
scaffold_5	retained_intron	19029108	19029499	-	asmbl_44887	none	STRG.7022.3,blat.proc3825150.chain_3134	2	STRG.7022.1,blat.proc3825150.chain_3133	2
scaffold_6	starts_in_intron	12619384	12619384	-	asmbl_48833	none	blat.proc3825152.chain_409	1	STRG.8019.1,Trinity_GG_4555_c0_g1_i2,Trinity_GG_4555_c0_g1_i3,blat.proc3825152.chain_408,blat.proc3825152.chain_410	5
scaffold_10	retained_intron	7672393	7672816	+	asmbl_3292	none	STRG.12556.2	1	STRG.12556.4	1
scaffold_5	alt_donor	18929540	18929541	-	asmbl_44880	none	STRG.7011.1,Trinity_GG_3913_c0_g1_i1,blat.proc3825150.chain_3141	3	STRG.7011.2	1
scaffold_19	spliced_intron	8219321	8219439	-	asmbl_22286	none	STRG.22275.2	1	blat.proc3825158.chain_3084,blat.proc3825158.chain_3085	2
scaffold_25	spliced_intron	9554175	9556117	+	asmbl_33830	none	STRG.27772.1,blat.proc3825178.chain_811	2	STRG.27772.3,blat.proc3825178.chain_814	2
scaffold_5	starts_in_intron	10804720	10804720	+	asmbl_45696	none	blat.proc3825166.chain_2566	1	STRG.6357.1,STRG.6357.2,blat.proc3825166.chain_2568,blat.proc3825166.chain_2570	4
scaffold_10	retained_intron	13458240	13458388	-	asmbl_4881	none	STRG.12936.2,blat.proc3825154.chain_1527	2	STRG.12936.3	1
scaffold_16	spliced_intron	8070830	8070976	-	asmbl_17222	none	STRG.19451.1	1	Trinity_GG_10901_c0_g1_i2,blat.proc3825158.chain_559	2
scaffold_14	alt_acceptor	8306302	8306303	+	asmbl_12221	none	STRG.17257.2	1	STRG.17257.1,blat.proc3825172.chain_2010,blat.proc3825172.chain_2012	3
scaffold_8	alt_acceptor	16504097	16504098	-	asmbl_52409	none	Trinity_GG_5934_c0_g1_i12,blat.proc3825152.chain_2935	2	STRG.10629.4,STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2931,blat.proc3825152.chain_2934,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	8
scaffold_3	spliced_intron	7708984	7709075	-	asmbl_38976,asmbl_38978,asmbl_38979,asmbl_38981,asmbl_38983	none	STRG.3368.1,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3201,blat.proc3825148.chain_3203	5	blat.proc3825148.chain_3200	1
scaffold_8	retained_intron	7484208	7484297	-	asmbl_51913	none	Trinity_GG_5574_c0_g1_i5,blat.proc3825152.chain_2255	2	STRG.10078.1,blat.proc3825152.chain_2259	2
scaffold_20	spliced_intron	10249426	10249538	-	asmbl_26095	none	STRG.23572.1,blat.proc3825160.chain_660,blat.proc3825160.chain_663	3	blat.proc3825160.chain_662	1
scaffold_4	retained_intron	5650431	5650953	-	asmbl_42621,asmbl_42625	none	STRG.4472.4,blat.proc3825150.chain_656,blat.proc3825150.chain_665	3	STRG.4472.1,STRG.4472.2,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_658,blat.proc3825150.chain_663,blat.proc3825150.chain_664,blat.proc3825150.chain_666,blat.proc3825150.chain_667,blat.proc3825150.chain_668	10
scaffold_7	alt_donor	13213472	13213473	+	asmbl_50320	none	STRG.9429.4	1	STRG.9429.3,blat.proc3825168.chain_1942	2
scaffold_26	skipped_exon	9607417	9610401	+	asmbl_35249	none	STRG.28513.3	1	STRG.28513.1,Trinity_GG_33085_c0_g1_i3,blat.proc3825178.chain_1633	3
scaffold_26	alt_donor	10153961	10153962	+	asmbl_35297,asmbl_35298	none	STRG.28534.3,Trinity_GG_33098_c0_g1_i1,blat.proc3825178.chain_1662,blat.proc3825178.chain_1664	4	STRG.28534.1,STRG.28534.2,Trinity_GG_33098_c0_g1_i2,blat.proc3825178.chain_1663	4
scaffold_17	alternate_exon	14351181	14352837	-	asmbl_18425	none	STRG.20914.1,blat.proc3825158.chain_1891	2	STRG.20914.2,blat.proc3825158.chain_1893	2
scaffold_13	alternate_exon	6140071	6147252	-	asmbl_9774	none	STRG.15919.2,Trinity_GG_8952_c1_g1_i1,blat.proc3825156.chain_810	3	STRG.15919.1,Trinity_GG_8952_c0_g1_i3,blat.proc3825156.chain_809	3
scaffold_12	spliced_intron	16403693	16403810	+	asmbl_8170,asmbl_8172,asmbl_8174	none	STRG.15402.4,STRG.15402.5,STRG.15402.6,blat.proc3825172.chain_46	4	STRG.15402.1,Trinity_GG_25733_c0_g1_i1,blat.proc3825172.chain_43	3
scaffold_23	alt_acceptor	10404999	10405000	+	asmbl_31860	none	STRG.26250.2	1	STRG.26250.1,blat.proc3825176.chain_3244	2
scaffold_19	spliced_intron	96182	96339	-	asmbl_21980	none	STRG.21827.2,Trinity_GG_12176_c0_g1_i2,blat.proc3825158.chain_2671	3	Trinity_GG_12176_c0_g1_i3,blat.proc3825158.chain_2672	2
scaffold_23	ends_in_intron	6621852	6621852	+	asmbl_31633	none	blat.proc3825176.chain_2886	1	STRG.26010.1,STRG.26010.2,blat.proc3825176.chain_2888,blat.proc3825176.chain_2889	4
scaffold_10	retained_intron	634820	635077	-	asmbl_3972	none	STRG.11945.3,Trinity_GG_6642_c0_g1_i2,blat.proc3825154.chain_482	3	STRG.11945.1,STRG.11945.2,STRG.11945.4,Trinity_GG_6642_c0_g1_i1,blat.proc3825154.chain_483,blat.proc3825154.chain_484,blat.proc3825154.chain_485	7
scaffold_3	skipped_exon	6037685	6039291	-	asmbl_38880,asmbl_38883	none	STRG.3259.3,STRG.3259.4	2	STRG.3259.1,STRG.3259.6,STRG.3259.7	3
scaffold_4	spliced_intron	14679949	14680368	-	asmbl_43077	none	STRG.5102.1	1	blat.proc3825150.chain_1225,blat.proc3825150.chain_1228	2
scaffold_4	ends_in_intron	18759502	18759502	+	asmbl_42103	none	STRG.5462.1	1	STRG.5462.2,Trinity_GG_20303_c0_g1_i3,blat.proc3825166.chain_1747	3
scaffold_18	alternate_exon	2818703	2832888	+	asmbl_20421	none	STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2056,blat.proc3825174.chain_2060	4	STRG.21142.4,STRG.21142.5,blat.proc3825174.chain_2046,blat.proc3825174.chain_2048	4
scaffold_21	retained_intron	7825384	7825604	-	asmbl_27861	none	blat.proc3825160.chain_1419	1	STRG.24322.1,blat.proc3825160.chain_1418,blat.proc3825160.chain_1420	3
scaffold_27	starts_in_intron	3400876	3400876	+	asmbl_36197	none	Trinity_GG_33194_c0_g1_i2,blat.proc3825178.chain_1832	2	STRG.28819.1,STRG.28819.2,blat.proc3825178.chain_1833	3
scaffold_4	alt_acceptor	3272765	3272766	+	asmbl_41162,asmbl_41163	none	STRG.4255.1,blat.proc3825166.chain_625,blat.proc3825166.chain_626	3	blat.proc3825166.chain_628	1
scaffold_17	alt_donor	7038412	7038413	-	asmbl_18025	none	STRG.20368.1,blat.proc3825158.chain_1345	2	STRG.20368.2	1
scaffold_22	spliced_intron	958386	958490	+	asmbl_29905	none	STRG.24741.1,Trinity_GG_31006_c0_g1_i1,blat.proc3825176.chain_1893	3	Trinity_GG_31006_c0_g1_i3,blat.proc3825176.chain_1892	2
scaffold_11	spliced_intron	13254292	13254374	-	asmbl_7125,asmbl_7128	none	STRG.14198.4,blat.proc3825154.chain_2769	2	STRG.14198.1,blat.proc3825154.chain_2770,blat.proc3825154.chain_2772,blat.proc3825154.chain_2773	4
scaffold_25	alternate_exon	7320859	7322301	-	asmbl_34397	none	STRG.27581.2	1	blat.proc3825178.chain_653	1
scaffold_1	alt_acceptor	5967880	5967881	-	asmbl_307	none	STRG.401.1,blat.proc3825148.chain_365	2	STRG.401.2,blat.proc3825148.chain_366	2
scaffold_11	retained_intron	15656260	15657450	-	asmbl_7197,asmbl_7198	none	Trinity_GG_8008_c0_g1_i6,blat.proc3825154.chain_2862,blat.proc3825154.chain_2863,blat.proc3825154.chain_2868	4	STRG.14308.1,STRG.14308.2,blat.proc3825154.chain_2859,blat.proc3825154.chain_2860,blat.proc3825154.chain_2861,blat.proc3825154.chain_2865,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867	8
scaffold_11	alt_acceptor	8790198	8790199	-	asmbl_6875,asmbl_6878	none	STRG.13904.3,blat.proc3825170.chain_2484	2	STRG.13904.1,STRG.13904.2,blat.proc3825170.chain_2482,blat.proc3825170.chain_2483	4
scaffold_16	alt_acceptor	13980974	13980975	-	asmbl_17423	none	STRG.19798.2	1	STRG.19798.1,Trinity_GG_11087_c0_g1_i1,blat.proc3825158.chain_825	3
scaffold_9	retained_intron	9547344	9547423	+	asmbl_54204	none	blat.proc3825170.chain_51	1	STRG.11315.1,blat.proc3825170.chain_50	2
scaffold_16	spliced_intron	5487668	5488014	-	asmbl_17109,asmbl_17110	none	STRG.19302.1,STRG.19302.2,Trinity_GG_10796_c0_g1_i2,Trinity_GG_10796_c0_g1_i3,blat.proc3825158.chain_358,blat.proc3825158.chain_359	6	Trinity_GG_10796_c0_g1_i1,blat.proc3825158.chain_360	2
scaffold_25	ends_in_intron	8685798	8685798	-	asmbl_34458	none	blat.proc3825162.chain_1060	1	STRG.27692.1,blat.proc3825162.chain_1061	2
scaffold_2	ends_in_intron	13064182	13064182	+	asmbl_24815	none	blat.proc3825164.chain_2502	1	STRG.2332.1,STRG.2332.2,blat.proc3825164.chain_2494,blat.proc3825164.chain_2495,blat.proc3825164.chain_2496,blat.proc3825164.chain_2497,blat.proc3825164.chain_2498,blat.proc3825164.chain_2499,blat.proc3825164.chain_2500	9
scaffold_19	skipped_exon	11779419	11780572	+	asmbl_21720	none	STRG.22505.1,blat.proc3825174.chain_3538	2	blat.proc3825174.chain_3539	1
scaffold_6	retained_intron	12484297	12484381	+	asmbl_47405,asmbl_47406	none	STRG.8007.1,STRG.8007.4,Trinity_GG_21697_c0_g1_i2,Trinity_GG_21697_c0_g1_i3,blat.proc3825168.chain_460,blat.proc3825168.chain_462	6	STRG.8007.2,STRG.8007.3,Trinity_GG_21697_c0_g1_i1,blat.proc3825168.chain_461	4
scaffold_13	ends_in_intron	13235006	13235006	+	asmbl_11373	none	blat.proc3825172.chain_1199	1	STRG.16396.1,blat.proc3825172.chain_1200	2
scaffold_20	starts_in_intron	1706519	1706519	-	asmbl_25605	none	Trinity_GG_12763_c0_g1_i2	1	STRG.22915.1	1
scaffold_21	alt_acceptor	675557	675558	-	asmbl_27338,asmbl_27339,asmbl_27340,asmbl_27342	none	STRG.23755.1,STRG.23755.2,STRG.23755.4,STRG.23755.5,blat.proc3825160.chain_876,blat.proc3825160.chain_877	6	STRG.23755.3	1
scaffold_24	spliced_intron	8747030	8747465	+	asmbl_32441	none	STRG.26888.1,Trinity_GG_32167_c0_g1_i1,blat.proc3825178.chain_75	3	STRG.26888.2,Trinity_GG_32167_c0_g2_i1,blat.proc3825178.chain_76	3
scaffold_12	spliced_intron	12018186	12018385	+	asmbl_7969,asmbl_7970,asmbl_7971	none	STRG.15117.1,STRG.15117.2,Trinity_GG_25593_c0_g1_i3,Trinity_GG_25593_c0_g1_i4,Trinity_GG_25593_c0_g1_i5,blat.proc3825170.chain_3541,blat.proc3825170.chain_3542,blat.proc3825170.chain_3543	8	blat.proc3825170.chain_3544	1
scaffold_13	retained_intron	8951830	8951935	-	asmbl_10004	none	blat.proc3825156.chain_1077	1	STRG.16166.1,STRG.16166.2,blat.proc3825156.chain_1078,blat.proc3825156.chain_1079	4
scaffold_1	alt_donor	12547508	12547509	-	asmbl_730,asmbl_733	none	STRG.870.1,blat.proc3825148.chain_801,blat.proc3825148.chain_802	3	STRG.870.2	1
scaffold_24	skipped_exon	10132037	10134152	+	asmbl_32544	none	STRG.26980.2	1	STRG.26980.1,Trinity_GG_32205_c1_g1_i1,blat.proc3825178.chain_131	3
scaffold_5	retained_intron	14124559	14124669	-	asmbl_44590	none	blat.proc3825166.chain_2774	1	STRG.6623.1	1
scaffold_3	spliced_intron	17535333	17535434	-	asmbl_39570,asmbl_39571	none	STRG.3989.1,STRG.3989.3,blat.proc3825150.chain_193,blat.proc3825150.chain_195	4	STRG.3989.2,blat.proc3825150.chain_192,blat.proc3825150.chain_194	3
scaffold_6	alternate_exon	13221678	13221922	+	asmbl_47496,asmbl_47503	none	STRG.8084.1,STRG.8084.2,blat.proc3825168.chain_576	3	STRG.8084.3,blat.proc3825168.chain_572,blat.proc3825168.chain_573	3
scaffold_5	skipped_exon	15468641	15469211	+	asmbl_45992	none	STRG.6734.2	1	STRG.6734.1	1
scaffold_14	retained_exon	15346209	15346341	-	asmbl_13715	none	blat.proc3825156.chain_2607	1	STRG.17765.3,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2610	3
scaffold_26	alt_donor	5523955	5523956	+	asmbl_35015	none	STRG.28262.1	1	STRG.28262.4	1
scaffold_4	alt_acceptor	16340807	16340808	-	asmbl_43158	none	STRG.5202.1	1	STRG.5202.2	1
scaffold_24	alternate_exon	10331251	10331331	+	asmbl_32556	none	STRG.26993.2	1	STRG.26993.1,blat.proc3825178.chain_213,blat.proc3825178.chain_214	3
scaffold_24	alternate_exon	7864384	7864430	-	asmbl_33074	none	STRG.26842.2,blat.proc3825162.chain_225	2	blat.proc3825162.chain_224	1
scaffold_4	ends_in_intron	5033934	5033934	-	asmbl_42551	none	Trinity_GG_2462_c0_g1_i1,blat.proc3825150.chain_630	2	STRG.4399.1,STRG.4399.3	2
scaffold_10	retained_exon	378846	378914	-	asmbl_3947	none	STRG.11922.1,blat.proc3825154.chain_461	2	STRG.11922.4,blat.proc3825154.chain_462	2
scaffold_15	alternate_exon	14663441	14664675	+	asmbl_15695	none	STRG.18882.1,Trinity_GG_27665_c1_g1_i1,blat.proc3825172.chain_3507	3	STRG.18882.2,Trinity_GG_27665_c0_g1_i4,blat.proc3825172.chain_3504	3
scaffold_1	retained_intron	14273795	14273994	+	asmbl_2369	none	blat.proc3825164.chain_1210	1	STRG.1023.1,STRG.1023.2,blat.proc3825164.chain_1208,blat.proc3825164.chain_1209	4
scaffold_24	spliced_intron	6432265	6432478	-	asmbl_32958	none	STRG.26697.1,blat.proc3825160.chain_3742	2	STRG.26697.2,blat.proc3825160.chain_3740,blat.proc3825160.chain_3741	3
scaffold_4	spliced_intron	16131996	16133361	-	asmbl_43140,asmbl_43143	none	STRG.5184.2,STRG.5184.3	2	STRG.5184.1,Trinity_GG_2891_c0_g1_i3,Trinity_GG_2891_c1_g1_i1,Trinity_GG_2891_c2_g1_i1,blat.proc3825150.chain_1344,blat.proc3825150.chain_1345	6
scaffold_16	alternate_exon	11952951	11953101	+	asmbl_16617	none	STRG.19723.2,Trinity_GG_28067_c0_g1_i2,blat.proc3825174.chain_558	3	STRG.19723.1,Trinity_GG_28067_c0_g1_i3,blat.proc3825174.chain_557	3
scaffold_14	retained_exon	15585857	15585898	+	asmbl_12632,asmbl_12634	none	STRG.17811.1,blat.proc3825172.chain_2556	2	STRG.17811.2,STRG.17811.6,STRG.17811.7	3
scaffold_3	alternate_exon	6079076	6083435	-	asmbl_38894	none	STRG.3258.1,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131,blat.proc3825148.chain_3133	4	blat.proc3825148.chain_3127	1
scaffold_4	skipped_exon	19587197	19587752	-	asmbl_43456,asmbl_43457,asmbl_43458	none	STRG.5543.3,STRG.5543.4,blat.proc3825150.chain_1742	3	STRG.5543.1,STRG.5543.2,blat.proc3825150.chain_1740,blat.proc3825150.chain_1743	4
scaffold_16	retained_exon	10835886	10836029	+	asmbl_16557	none	STRG.19636.1,blat.proc3825174.chain_516	2	blat.proc3825174.chain_515	1
scaffold_6	alt_donor	17829825	17829826	+	asmbl_47789	none	STRG.8472.1	1	STRG.8472.2,Trinity_GG_21977_c0_g1_i1,blat.proc3825168.chain_934	3
scaffold_22	alternate_exon	959168	959355	+	asmbl_29907	none	STRG.24743.1,blat.proc3825176.chain_1891	2	STRG.24743.2	1
scaffold_5	alt_donor	11080004	11080005	+	asmbl_45727,asmbl_45728	none	STRG.6399.2,STRG.6399.3,blat.proc3825166.chain_2600,blat.proc3825166.chain_2602	4	STRG.6399.1,blat.proc3825166.chain_2599,blat.proc3825166.chain_2601	3
scaffold_20	retained_exon	11613242	11613370	-	asmbl_26168	none	STRG.23678.2	1	STRG.23678.1	1
scaffold_6	alt_donor	2481514	2481515	-	asmbl_48128	none	STRG.7245.4,blat.proc3825150.chain_3361	2	STRG.7245.1,blat.proc3825150.chain_3360	2
scaffold_2	spliced_intron	14561797	14561960	+	asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24959,asmbl_24960,asmbl_24961	none	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	10	blat.proc3825164.chain_2654	1
scaffold_17	skipped_exon	9004119	9005702	+	asmbl_19054,asmbl_19055	none	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4	STRG.20525.3,blat.proc3825174.chain_1322	2
scaffold_7	alternate_exon	1234374	1235346	+	asmbl_49592	none	blat.proc3825168.chain_1068	1	STRG.8637.1,STRG.8637.2,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1074,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	12
scaffold_11	retained_intron	11069659	11070082	-	asmbl_7016	none	blat.proc3825154.chain_2627	1	STRG.14073.1,blat.proc3825154.chain_2628	2
scaffold_2	spliced_intron	14080181	14080211	+	asmbl_24873,asmbl_24874	none	STRG.2404.1,STRG.2404.2	2	STRG.2404.3	1
scaffold_2	starts_in_intron	8194392	8194392	+	asmbl_24618	none	blat.proc3825164.chain_2283	1	STRG.2110.1,STRG.2110.2,blat.proc3825164.chain_2282,blat.proc3825164.chain_2284	4
scaffold_18	alt_donor	4729830	4729831	-	asmbl_19823	none	blat.proc3825158.chain_2149	1	STRG.21268.1,blat.proc3825158.chain_2148	2
scaffold_9	spliced_intron	9597034	9597966	-	asmbl_55208	none	STRG.11329.1,blat.proc3825152.chain_3513	2	STRG.11329.2,STRG.11329.3,blat.proc3825152.chain_3514	3
scaffold_11	starts_in_intron	7597532	7597532	-	asmbl_6778	none	STRG.13763.2,Trinity_GG_7670_c0_g1_i2,blat.proc3825154.chain_2265	3	STRG.13763.1,Trinity_GG_7670_c0_g1_i1,blat.proc3825154.chain_2264	3
scaffold_22	retained_intron	506433	506518	-	asmbl_29100	none	Trinity_GG_13790_c0_g1_i9,blat.proc3825160.chain_1861	2	STRG.24702.1,STRG.24702.5,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i15,Trinity_GG_13790_c0_g1_i4,Trinity_GG_13790_c0_g1_i5,Trinity_GG_13790_c0_g1_i8,blat.proc3825160.chain_1860,blat.proc3825160.chain_1863,blat.proc3825160.chain_1865,blat.proc3825160.chain_1866,blat.proc3825160.chain_1867,blat.proc3825160.chain_1869	14
scaffold_13	retained_intron	8013555	8013678	+	asmbl_11092	none	blat.proc3825172.chain_787	1	STRG.16081.1,STRG.16081.2,blat.proc3825172.chain_788	3
scaffold_7	alt_donor	10339719	10339720	-	asmbl_51121	none	STRG.9215.3	1	STRG.9215.1,STRG.9215.2,Trinity_GG_5194_c0_g1_i1,Trinity_GG_5194_c0_g1_i2,blat.proc3825152.chain_1575,blat.proc3825152.chain_1576	6
scaffold_18	ends_in_intron	7508909	7508909	-	asmbl_19948,asmbl_19949	none	Trinity_GG_11994_c0_g1_i1,Trinity_GG_11994_c0_g1_i2,blat.proc3825158.chain_2344,blat.proc3825158.chain_2345	4	STRG.21447.1,Trinity_GG_11994_c0_g1_i3,blat.proc3825158.chain_2346	3
scaffold_3	skipped_exon	10296072	10297387	+	asmbl_40259	none	STRG.3468.2,blat.proc3825166.chain_14	2	STRG.3468.1,blat.proc3825166.chain_13	2
scaffold_4	ends_in_intron	4552155	4552155	+	asmbl_41289	none	blat.proc3825166.chain_781	1	STRG.4367.1,STRG.4367.2,blat.proc3825166.chain_779	3
scaffold_11	starts_in_intron	6252374	6252374	+	asmbl_5623	none	blat.proc3825170.chain_2242	1	STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237	3
scaffold_12	skipped_exon	10004094	10004735	-	asmbl_8713	none	STRG.14976.2,blat.proc3825154.chain_3480	2	STRG.14976.1,STRG.14976.3	2
scaffold_12	retained_intron	12288575	12288996	-	asmbl_8854,asmbl_8855,asmbl_8856,asmbl_8858	none	STRG.15130.2,STRG.15130.3,STRG.15130.4,STRG.15130.5	4	STRG.15130.1	1
scaffold_18	retained_intron	7648011	7649078	+	asmbl_20755,asmbl_20757	none	STRG.21464.1,Trinity_GG_29170_c0_g1_i2,Trinity_GG_29170_c0_g1_i3,blat.proc3825174.chain_2498,blat.proc3825174.chain_2499	5	STRG.21464.2	1
scaffold_3	spliced_intron	14334025	14334182	-	asmbl_39362,asmbl_39363	none	STRG.3780.1,STRG.3780.2,Trinity_GG_2051_c0_g1_i1,Trinity_GG_2051_c0_g1_i2,blat.proc3825148.chain_3625,blat.proc3825148.chain_3626	6	STRG.3780.3,Trinity_GG_2051_c0_g1_i4,blat.proc3825148.chain_3627	3
scaffold_5	alt_acceptor	16205635	16205636	+	asmbl_46061	none	blat.proc3825166.chain_2954	1	STRG.6809.1,STRG.6809.2,blat.proc3825166.chain_2951,blat.proc3825166.chain_2952,blat.proc3825166.chain_2953	5
scaffold_19	retained_intron	12246328	12246698	-	asmbl_22469,asmbl_22471,asmbl_22473	none	STRG.22552.1,blat.proc3825158.chain_3307,blat.proc3825158.chain_3310,blat.proc3825158.chain_3313	4	STRG.22552.2,blat.proc3825158.chain_3309,blat.proc3825158.chain_3311	3
scaffold_3	spliced_intron	17845439	17845840	+	asmbl_40704,asmbl_40707	none	STRG.4004.2,STRG.4004.3,blat.proc3825166.chain_495	3	STRG.4004.4,blat.proc3825166.chain_496	2
scaffold_2	alt_donor	3470183	3470184	+	asmbl_24288	none	STRG.1777.2	1	STRG.1777.1,Trinity_GG_18310_c0_g1_i1,blat.proc3825164.chain_1916	3
scaffold_7	alternate_exon	8195814	8197248	+	asmbl_49965	none	STRG.9057.2,blat.proc3825168.chain_1549,blat.proc3825168.chain_1550	3	STRG.9057.1,Trinity_GG_22323_c0_g1_i4,blat.proc3825168.chain_1545,blat.proc3825168.chain_1547,blat.proc3825168.chain_1548	5
scaffold_28	retained_intron	9441283	9441479	-	asmbl_38514	none	blat.proc3825162.chain_3166	1	STRG.29974.1	1
scaffold_18	starts_in_intron	7861677	7861677	+	asmbl_20795	none	Trinity_GG_29187_c0_g1_i5,blat.proc3825174.chain_2542	2	STRG.21485.1,blat.proc3825174.chain_2541	2
scaffold_23	alt_donor	4899474	4899475	+	asmbl_31532,asmbl_31534,asmbl_31538	none	STRG.25884.1,STRG.25884.2,Trinity_GG_31591_c0_g1_i2,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2817,blat.proc3825176.chain_2819	6	STRG.25884.4,Trinity_GG_31591_c0_g1_i3,blat.proc3825176.chain_2816	3
scaffold_22	spliced_intron	504274	504463	-	asmbl_29090,asmbl_29091,asmbl_29092,asmbl_29102	none	STRG.24702.1,STRG.24702.2,STRG.24702.4,Trinity_GG_13790_c0_g1_i11,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i2,Trinity_GG_13790_c0_g1_i4,blat.proc3825160.chain_1862,blat.proc3825160.chain_1865,blat.proc3825160.chain_1867,blat.proc3825160.chain_1868	11	STRG.24702.3,Trinity_GG_13790_c0_g1_i10,blat.proc3825160.chain_1869	3
scaffold_6	alt_acceptor	4152244	4152245	-	asmbl_48290	none	STRG.7390.1,blat.proc3825150.chain_3533	2	STRG.7390.2	1
scaffold_21	spliced_intron	1861553	1861668	-	asmbl_27425	none	STRG.23827.1,blat.proc3825160.chain_953	2	blat.proc3825160.chain_952	1
scaffold_28	ends_in_intron	571709	571709	-	asmbl_37918	none	blat.proc3825162.chain_2428	1	STRG.29279.1,blat.proc3825162.chain_2429	2
scaffold_1	alt_acceptor	16715881	16715882	-	asmbl_1010,asmbl_1012,asmbl_1014	none	STRG.1177.1,STRG.1177.4,Trinity_GG_569_c0_g1_i3,blat.proc3825148.chain_1082,blat.proc3825148.chain_1083	5	STRG.1177.2,STRG.1177.3,blat.proc3825148.chain_1084	3
scaffold_3	starts_in_intron	18029717	18029717	+	asmbl_40722	none	blat.proc3825166.chain_513	1	STRG.4010.1,blat.proc3825166.chain_512	2
scaffold_15	starts_in_intron	949668	949668	+	asmbl_14990	none	Trinity_GG_27120_c0_g1_i2,blat.proc3825172.chain_2574	2	STRG.17936.1,Trinity_GG_27120_c0_g1_i1,blat.proc3825172.chain_2575	3
scaffold_3	starts_in_intron	13701291	13701291	+	asmbl_40448,asmbl_40449	none	STRG.3717.3,STRG.3717.4,Trinity_GG_19399_c1_g1_i1,blat.proc3825166.chain_224	4	STRG.3717.1,STRG.3717.2,blat.proc3825166.chain_218,blat.proc3825166.chain_222	4
scaffold_14	alternate_exon	1602821	1603512	-	asmbl_12903	none	STRG.16803.1,Trinity_GG_9375_c0_g1_i1,blat.proc3825156.chain_1573	3	STRG.16803.2,Trinity_GG_9375_c0_g1_i2,Trinity_GG_9375_c0_g1_i3,blat.proc3825156.chain_1574,blat.proc3825156.chain_1576	5
scaffold_17	starts_in_intron	2422723	2422723	+	asmbl_18650	none	blat.proc3825174.chain_915	1	STRG.20034.1,blat.proc3825174.chain_916	2
scaffold_21	retained_intron	255225	255467	-	asmbl_27290,asmbl_27293	none	blat.proc3825160.chain_805,blat.proc3825160.chain_810	2	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.4,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806,blat.proc3825160.chain_807,blat.proc3825160.chain_808,blat.proc3825160.chain_809,blat.proc3825160.chain_811,blat.proc3825160.chain_812	15
scaffold_8	alt_donor	15152798	15152799	+	asmbl_53386	none	STRG.10545.2,blat.proc3825168.chain_3081	2	STRG.10545.1,blat.proc3825168.chain_3082	2
scaffold_14	alt_donor	15517209	15517210	-	asmbl_13730	none	STRG.17792.2	1	STRG.17792.3	1
scaffold_2	alt_donor	17479024	17479025	-	asmbl_23726	none	STRG.2634.1,STRG.2634.2,Trinity_GG_1445_c1_g1_i2,blat.proc3825148.chain_2587	4	STRG.2634.3	1
scaffold_6	spliced_intron	6708324	6709026	-	asmbl_48462	none	STRG.7584.1	1	blat.proc3825150.chain_3744	1
scaffold_2	spliced_intron	7988750	7988928	+	asmbl_24605	none	STRG.2092.2,Trinity_GG_18464_c0_g1_i2,blat.proc3825164.chain_2185	3	STRG.2092.1,Trinity_GG_18464_c0_g1_i1,blat.proc3825164.chain_2186	3
scaffold_15	spliced_intron	12748286	12748489	+	asmbl_15599,asmbl_15600,asmbl_15602	none	STRG.18732.1,STRG.18732.2,blat.proc3825172.chain_3377,blat.proc3825172.chain_3378,blat.proc3825172.chain_3379	5	blat.proc3825172.chain_3380	1
scaffold_24	spliced_intron	10779531	10779624	-	asmbl_33218,asmbl_33219	none	STRG.27043.1,blat.proc3825162.chain_367,blat.proc3825162.chain_368	3	blat.proc3825162.chain_369,blat.proc3825162.chain_370	2
scaffold_8	ends_in_intron	18304	18304	-	asmbl_51681	none	Trinity_GG_5465_c0_g1_i3,blat.proc3825152.chain_2073	2	STRG.9703.2,STRG.9703.3,blat.proc3825152.chain_2072,blat.proc3825152.chain_2074,blat.proc3825152.chain_2075	5
scaffold_5	starts_in_intron	12657645	12657645	+	asmbl_45813	none	blat.proc3825166.chain_2639	1	STRG.6505.1,STRG.6505.2,blat.proc3825166.chain_2636,blat.proc3825166.chain_2637	4
scaffold_17	alt_acceptor	3844463	3844464	+	asmbl_18744	none	blat.proc3825174.chain_973	1	STRG.20149.1,blat.proc3825174.chain_971,blat.proc3825174.chain_972	3
scaffold_6	alternate_exon	17709238	17709268	+	asmbl_47779	none	STRG.8460.1,Trinity_GG_21934_c0_g1_i1,blat.proc3825168.chain_872	3	STRG.8460.2	1
scaffold_13	alt_acceptor	16190374	16190375	-	asmbl_10279	none	STRG.16666.2	1	STRG.16666.1,Trinity_GG_9290_c0_g1_i1,blat.proc3825156.chain_1426	3
scaffold_8	alt_acceptor	16386918	16386919	+	asmbl_53449,asmbl_53453	none	STRG.10620.2,Trinity_GG_23226_c0_g1_i2,Trinity_GG_23226_c0_g1_i6,blat.proc3825168.chain_3193,blat.proc3825168.chain_3197	5	STRG.10620.1,STRG.10620.3,STRG.10620.4,Trinity_GG_23226_c0_g1_i3,Trinity_GG_23226_c0_g1_i4,blat.proc3825168.chain_3195,blat.proc3825168.chain_3196	7
scaffold_22	alternate_exon	11343527	11344102	-	asmbl_29664	none	STRG.25465.2,blat.proc3825160.chain_2647	2	blat.proc3825160.chain_2648	1
scaffold_300	retained_intron	1280	1585	+	asmbl_40902	none	STRG.30272.3,blat.proc3825178.chain_3363	2	STRG.30272.1,blat.proc3825178.chain_3365	2
scaffold_13	starts_in_intron	6622316	6622316	+	asmbl_10958,asmbl_10959	none	Trinity_GG_26066_c0_g1_i1,Trinity_GG_26066_c0_g1_i3,blat.proc3825172.chain_684,blat.proc3825172.chain_687	4	Trinity_GG_26066_c0_g1_i2,blat.proc3825172.chain_685	2
scaffold_3	alt_donor	13833535	13833536	+	asmbl_40464	none	Trinity_GG_19394_c0_g1_i6,blat.proc3825166.chain_209	2	STRG.3730.1,Trinity_GG_19394_c0_g1_i1,Trinity_GG_19394_c0_g1_i3,blat.proc3825166.chain_207,blat.proc3825166.chain_208,blat.proc3825166.chain_210	6
scaffold_9	retained_intron	12012157	12012204	+	asmbl_54405	none	Trinity_GG_23759_c0_g1_i1,blat.proc3825170.chain_357	2	STRG.11527.1	1
scaffold_13	spliced_intron	6396903	6397368	+	asmbl_10924,asmbl_10928,asmbl_10929	none	STRG.15929.1,STRG.15929.4,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	5	Trinity_GG_26055_c0_g1_i2,blat.proc3825172.chain_653	2
scaffold_4	spliced_intron	5648305	5648753	-	asmbl_42616,asmbl_42626,asmbl_42631	none	STRG.4472.1,blat.proc3825150.chain_669,blat.proc3825150.chain_670,blat.proc3825150.chain_671	4	Trinity_GG_2475_c1_g1_i2,blat.proc3825150.chain_673,blat.proc3825150.chain_674	3
scaffold_11	starts_in_intron	2618907	2618907	+	asmbl_5372	none	STRG.13404.2,blat.proc3825170.chain_1869	2	STRG.13404.1	1
scaffold_7	skipped_exon	129533	130198	-	asmbl_50665	none	STRG.8595.7	1	STRG.8595.5	1
scaffold_28	spliced_intron	2303296	2303372	-	asmbl_38037	none	STRG.29403.1	1	STRG.29403.2	1
scaffold_20	starts_in_intron	7818395	7818395	-	asmbl_25926	none	Trinity_GG_13036_c0_g1_i1,blat.proc3825160.chain_456	2	STRG.23332.1,Trinity_GG_13036_c0_g1_i2,blat.proc3825160.chain_457	3
scaffold_21	starts_in_intron	5175615	5175615	-	asmbl_27627	none	blat.proc3825160.chain_1242	1	STRG.24060.1,blat.proc3825160.chain_1237,blat.proc3825160.chain_1238,blat.proc3825160.chain_1239,blat.proc3825160.chain_1241	5
scaffold_21	spliced_intron	457059	457190	-	asmbl_27321	none	STRG.23740.1,blat.proc3825160.chain_856	2	blat.proc3825160.chain_854,blat.proc3825160.chain_855	2
scaffold_3	retained_exon	14576165	14576217	-	asmbl_39398	none	STRG.3797.1,blat.proc3825148.chain_3741	2	STRG.3797.2,blat.proc3825148.chain_3740	2
scaffold_1	spliced_intron	12048626	12048713	-	asmbl_680,asmbl_682	none	STRG.817.3,blat.proc3825148.chain_753	2	STRG.817.1,STRG.817.2,blat.proc3825148.chain_752	3
scaffold_10	retained_exon	5010325	5010429	-	asmbl_4335	none	blat.proc3825154.chain_848	1	STRG.12326.2,blat.proc3825154.chain_849	2
scaffold_7	retained_exon	11768121	11768276	+	asmbl_50185,asmbl_50186,asmbl_50188	none	STRG.9289.1,blat.proc3825168.chain_1750,blat.proc3825168.chain_1751,blat.proc3825168.chain_1752	4	STRG.9289.2	1
scaffold_13	retained_exon	6884888	6885037	+	asmbl_10993,asmbl_10994	none	STRG.15980.1,STRG.15980.3,blat.proc3825172.chain_730,blat.proc3825172.chain_732	4	STRG.15980.2,blat.proc3825172.chain_731	2
scaffold_20	spliced_intron	10384363	10384458	+	asmbl_26960	none	STRG.23583.4	1	blat.proc3825176.chain_672	1
scaffold_15	alt_acceptor	15163492	15163493	+	asmbl_15722	none	STRG.18905.1,blat.proc3825172.chain_3484	2	STRG.18905.2	1
scaffold_1	alt_donor	16498282	16498283	-	asmbl_1000	none	STRG.1155.2,blat.proc3825148.chain_1094	2	STRG.1155.1,blat.proc3825148.chain_1093	2
scaffold_21	alternate_exon	11992302	11992469	-	asmbl_28147	none	STRG.24651.2	1	STRG.24651.1,Trinity_GG_13782_c0_g1_i1,blat.proc3825160.chain_1848	3
scaffold_5	starts_in_intron	18193294	18193294	+	asmbl_46215	none	Trinity_GG_21130_c0_g1_i3,blat.proc3825166.chain_3143	2	STRG.6958.1,Trinity_GG_21130_c0_g1_i2,Trinity_GG_21130_c0_g1_i4,blat.proc3825166.chain_3145,blat.proc3825166.chain_3146	5
scaffold_5	spliced_intron	13316098	13316220	-	asmbl_44542	none	blat.proc3825150.chain_2766	1	blat.proc3825150.chain_2764	1
scaffold_14	starts_in_intron	12816304	12816304	-	asmbl_13610	none	STRG.17596.2,blat.proc3825156.chain_2443	2	STRG.17596.1,blat.proc3825156.chain_2442	2
scaffold_24	alt_donor	8954743	8954744	+	asmbl_32462	none	STRG.26917.2	1	blat.proc3825178.chain_104	1
scaffold_1	starts_in_intron	12811778	12811778	-	asmbl_772	none	blat.proc3825148.chain_858	1	STRG.905.1,blat.proc3825148.chain_857	2
scaffold_27	ends_in_intron	973369	973369	+	asmbl_35969	none	STRG.28595.3,Trinity_GG_33133_c2_g1_i1,blat.proc3825178.chain_1723	3	STRG.28595.1,STRG.28595.4,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i3,Trinity_GG_33133_c0_g1_i4,Trinity_GG_33133_c0_g2_i1,blat.proc3825178.chain_1718,blat.proc3825178.chain_1719,blat.proc3825178.chain_1720	9
scaffold_6	ends_in_intron	18370723	18370723	-	asmbl_49245	none	Trinity_GG_4848_c0_g1_i2,blat.proc3825152.chain_943	2	STRG.8509.1,Trinity_GG_4848_c0_g1_i1,blat.proc3825152.chain_944	3
scaffold_4	spliced_intron	13416104	13416213	+	asmbl_41788,asmbl_41789,asmbl_41790,asmbl_41791	none	STRG.4977.1,STRG.4977.2,STRG.4977.3,blat.proc3825166.chain_1334,blat.proc3825166.chain_1336	5	blat.proc3825166.chain_1335,blat.proc3825166.chain_1337	2
scaffold_7	starts_in_intron	10267474	10267474	-	asmbl_51111	none	blat.proc3825152.chain_1580	1	STRG.9203.1,blat.proc3825152.chain_1579,blat.proc3825152.chain_1582	3
scaffold_27	alt_acceptor	4528533	4528534	+	asmbl_36303,asmbl_36308	none	STRG.28906.2,blat.proc3825178.chain_2159	2	STRG.28906.1,Trinity_GG_33335_c7_g1_i1,blat.proc3825178.chain_2166	3
scaffold_5	retained_intron	13881229	13881333	+	asmbl_45888	none	blat.proc3825166.chain_2764	1	STRG.6616.1,STRG.6616.2,blat.proc3825166.chain_2762,blat.proc3825166.chain_2763	4
scaffold_17	ends_in_intron	3141602	3141602	-	asmbl_17803	none	Trinity_GG_11267_c0_g1_i3	1	STRG.20097.1,STRG.20097.2,blat.proc3825158.chain_1116	3
scaffold_1	alternate_exon	11746186	11747785	+	asmbl_2141	none	STRG.789.2,blat.proc3825164.chain_970	2	blat.proc3825164.chain_971	1
scaffold_9	starts_in_intron	5553655	5553655	-	asmbl_55014	none	blat.proc3825152.chain_3407	1	STRG.11127.1,blat.proc3825152.chain_3410,blat.proc3825152.chain_3411	3
scaffold_10	alt_acceptor	9004231	9004232	+	asmbl_3351,asmbl_3353	none	STRG.12646.2,STRG.12646.4,blat.proc3825170.chain_1216	3	STRG.12646.1,STRG.12646.3	2
scaffold_22	spliced_intron	594271	594371	+	asmbl_29867,asmbl_29869	none	STRG.24712.1,Trinity_GG_30938_c0_g1_i1,Trinity_GG_30938_c0_g1_i4,blat.proc3825176.chain_1771,blat.proc3825176.chain_1772	5	Trinity_GG_30938_c0_g1_i3,blat.proc3825176.chain_1773	2
scaffold_7	alternate_exon	11863946	11864118	-	asmbl_51173	none	blat.proc3825152.chain_1680	1	STRG.9306.1,STRG.9306.2	2
scaffold_5	retained_intron	11992233	11993057	-	asmbl_44432,asmbl_44435	none	STRG.6453.2,blat.proc3825150.chain_2615	2	STRG.6453.4,STRG.6453.5,STRG.6453.8,STRG.6453.9,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	6
scaffold_23	starts_in_intron	6285376	6285376	+	asmbl_31610	none	blat.proc3825176.chain_2902	1	STRG.25969.1,blat.proc3825176.chain_2903	2
scaffold_3	starts_in_intron	16000813	16000813	-	asmbl_39464	none	blat.proc3825150.chain_51	1	STRG.3876.1,blat.proc3825150.chain_52	2
scaffold_9	retained_intron	11021992	11022126	-	asmbl_55264,asmbl_55265	none	STRG.11409.1,blat.proc3825152.chain_3516,blat.proc3825152.chain_3517	3	STRG.11409.2,blat.proc3825152.chain_3518	2
scaffold_11	retained_intron	175992	176272	+	asmbl_5265,asmbl_5267	none	blat.proc3825170.chain_1809,blat.proc3825170.chain_1811	2	Trinity_GG_24602_c0_g1_i3,blat.proc3825170.chain_1810,blat.proc3825170.chain_1812	3
scaffold_21	alt_acceptor	11992093	11992094	-	asmbl_28146	none	STRG.24651.1,Trinity_GG_13782_c0_g1_i1,blat.proc3825160.chain_1848	3	STRG.24651.2	1
scaffold_17	retained_intron	14110311	14110420	-	asmbl_18408	none	blat.proc3825158.chain_1841	1	STRG.20898.1,blat.proc3825158.chain_1842,blat.proc3825158.chain_1843	3
scaffold_27	spliced_intron	3742551	3742650	-	asmbl_36920,asmbl_36921	none	STRG.28841.2,STRG.28841.3,blat.proc3825162.chain_2085,blat.proc3825162.chain_2087	4	STRG.28841.1,blat.proc3825162.chain_2086,blat.proc3825162.chain_2088	3
scaffold_25	spliced_intron	3095414	3095695	-	asmbl_34090,asmbl_34092	none	STRG.27251.2,blat.proc3825162.chain_555	2	blat.proc3825162.chain_553	1
scaffold_14	starts_in_intron	8370251	8370251	-	asmbl_13298	none	blat.proc3825156.chain_2015	1	STRG.17270.1,STRG.17270.2,blat.proc3825156.chain_2016	3
scaffold_24	skipped_exon	8954743	8955084	+	asmbl_32462	none	STRG.26917.2	1	STRG.26917.1,Trinity_GG_32185_c0_g1_i1,blat.proc3825178.chain_102	3
scaffold_12	alt_donor	12451979	12451980	+	asmbl_8006	none	STRG.15151.1	1	STRG.15151.2,blat.proc3825170.chain_3677	2
scaffold_5	retained_intron	6853682	6853716	-	asmbl_44153	none	STRG.6100.1	1	STRG.6100.2	1
scaffold_20	alt_donor	3712044	3712045	+	asmbl_26541	none	STRG.23072.2	1	STRG.23072.1,blat.proc3825176.chain_179,blat.proc3825176.chain_182	3
scaffold_7	retained_intron	12388225	12388322	-	asmbl_51206,asmbl_51209	none	blat.proc3825152.chain_1655,blat.proc3825152.chain_1660	2	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1657,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1661	6
scaffold_6	retained_exon	13228971	13229075	+	asmbl_47503,asmbl_47509	none	STRG.8084.1,blat.proc3825168.chain_573,blat.proc3825168.chain_576	3	STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_577	3
scaffold_2	starts_in_intron	8776674	8776674	-	asmbl_23333	none	blat.proc3825148.chain_2084	1	STRG.2134.1,blat.proc3825148.chain_2081,blat.proc3825148.chain_2083	3
scaffold_12	alt_acceptor	12064812	12064813	+	asmbl_7974	none	STRG.15122.2	1	STRG.15122.1,blat.proc3825170.chain_3608	2
scaffold_6	alt_acceptor	6026259	6026260	+	asmbl_46988	none	STRG.7554.3	1	STRG.7554.1,STRG.7554.2,blat.proc3825166.chain_3718	3
scaffold_6	alt_acceptor	18218551	18218552	-	asmbl_49232	none	STRG.8495.2	1	STRG.8495.1	1
scaffold_11	starts_in_intron	2139524	2139524	-	asmbl_6481	none	blat.proc3825154.chain_1962	1	STRG.13377.1,blat.proc3825154.chain_1963	2
scaffold_25	alt_acceptor	4888638	4888639	+	asmbl_33543	none	STRG.27420.2,Trinity_GG_32424_c0_g1_i1,blat.proc3825178.chain_517	3	STRG.27420.1,Trinity_GG_32424_c0_g1_i2,blat.proc3825178.chain_518	3
scaffold_12	alternate_exon	4609993	4610122	-	asmbl_8414,asmbl_8418,asmbl_8419,asmbl_8420	none	STRG.14639.4,Trinity_GG_8168_c0_g1_i1,blat.proc3825154.chain_3139,blat.proc3825154.chain_3140,blat.proc3825154.chain_3141	5	STRG.14639.3,blat.proc3825154.chain_3142	2
scaffold_10	retained_intron	13002218	13002487	+	asmbl_3573	none	STRG.12909.3,blat.proc3825170.chain_1526	2	STRG.12909.1,blat.proc3825170.chain_1524	2
scaffold_21	retained_intron	4649422	4649538	-	asmbl_27577	none	blat.proc3825160.chain_1137	1	STRG.24010.1,blat.proc3825160.chain_1136	2
scaffold_15	starts_in_intron	7187408	7187408	-	asmbl_14282	none	blat.proc3825156.chain_3033	1	STRG.18309.1,blat.proc3825156.chain_3034	2
scaffold_8	starts_in_intron	12691228	12691228	+	asmbl_53330	none	blat.proc3825168.chain_3006	1	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3009	5
scaffold_1	alt_acceptor	12450557	12450558	+	asmbl_2218,asmbl_2220,asmbl_2221	none	STRG.859.1,STRG.859.2,Trinity_GG_17840_c0_g1_i2,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1027,blat.proc3825164.chain_1030,blat.proc3825164.chain_1031	7	STRG.859.3	1
scaffold_23	alternate_exon	7685949	7687701	+	asmbl_31719	none	STRG.26090.4	1	STRG.26090.1,Trinity_GG_31727_c0_g1_i4,Trinity_GG_31727_c2_g1_i1,blat.proc3825176.chain_3056,blat.proc3825176.chain_3059	5
scaffold_1	ends_in_intron	6980045	6980045	+	asmbl_1875	none	blat.proc3825164.chain_652	1	STRG.501.1,STRG.501.2,blat.proc3825164.chain_653	3
scaffold_26	ends_in_intron	5509611	5509611	+	asmbl_35011	none	blat.proc3825178.chain_1339	1	STRG.28259.1,blat.proc3825178.chain_1340	2
scaffold_28	starts_in_intron	5014320	5014320	+	asmbl_37556,asmbl_37558,asmbl_37559,asmbl_37562	none	STRG.29651.2,Trinity_GG_33747_c0_g1_i1,Trinity_GG_33747_c0_g1_i3,Trinity_GG_33747_c0_g1_i4,blat.proc3825178.chain_2828,blat.proc3825178.chain_2829,blat.proc3825178.chain_2830,blat.proc3825178.chain_2831	8	STRG.29651.1,Trinity_GG_33747_c0_g2_i4,blat.proc3825178.chain_2832,blat.proc3825178.chain_2833,blat.proc3825178.chain_2834	5
scaffold_15	skipped_exon	15345818	15347791	+	asmbl_15754	none	STRG.18919.1	1	STRG.18919.2	1
scaffold_2	starts_in_intron	17445909	17445909	-	asmbl_23724	none	STRG.2628.2	1	STRG.2628.1	1
scaffold_7	alt_donor	8662294	8662295	-	asmbl_51025,asmbl_51027	none	blat.proc3825152.chain_1496,blat.proc3825152.chain_1498	2	STRG.9099.1,STRG.9099.2,blat.proc3825152.chain_1497,blat.proc3825152.chain_1499	4
scaffold_14	starts_in_intron	1327536	1327536	+	asmbl_11818	none	Trinity_GG_26558_c1_g1_i1,blat.proc3825172.chain_1577	2	STRG.16784.1,blat.proc3825172.chain_1576	2
scaffold_12	spliced_intron	12285468	12285562	-	asmbl_8852	none	STRG.15127.3	1	STRG.15127.2	1
scaffold_5	alt_acceptor	10245327	10245328	-	asmbl_44329	none	STRG.6325.1,Trinity_GG_3535_c0_g1_i2,blat.proc3825150.chain_2473	3	STRG.6325.2	1
scaffold_5	starts_in_intron	8674712	8674712	+	asmbl_45564	none	blat.proc3825166.chain_2326	1	STRG.6204.1,STRG.6204.2,blat.proc3825166.chain_2324,blat.proc3825166.chain_2325	4
scaffold_3	alt_acceptor	10629026	10629027	+	asmbl_40281,asmbl_40286,asmbl_40287,asmbl_40288,asmbl_40290	none	STRG.3513.2,STRG.3513.5,blat.proc3825164.chain_3683,blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687	6	blat.proc3825164.chain_3688	1
scaffold_9	skipped_exon	17659157	17660769	-	asmbl_55669	none	STRG.11848.1,Trinity_GG_6559_c0_g1_i3,blat.proc3825154.chain_337	3	STRG.11848.2,STRG.11848.3,Trinity_GG_6559_c0_g1_i1,Trinity_GG_6559_c0_g1_i4,blat.proc3825154.chain_338,blat.proc3825154.chain_339	6
scaffold_27	alternate_exon	5656640	5656700	+	asmbl_36349	none	STRG.28973.3,Trinity_GG_33308_c0_g1_i1,blat.proc3825178.chain_2096	3	STRG.28973.1,STRG.28973.2,blat.proc3825178.chain_2093,blat.proc3825178.chain_2094,blat.proc3825178.chain_2095	5
scaffold_13	alt_donor	15679019	15679020	+	asmbl_11532	none	STRG.16609.2	1	STRG.16609.1	1
scaffold_10	starts_in_intron	17710768	17710768	-	asmbl_5068	none	Trinity_GG_7380_c0_g1_i2,blat.proc3825154.chain_1765	2	STRG.13225.1,blat.proc3825154.chain_1766	2
scaffold_11	starts_in_intron	8398119	8398119	+	asmbl_5762,asmbl_5768	none	blat.proc3825170.chain_2395,blat.proc3825170.chain_2396	2	STRG.13857.1,STRG.13857.2,STRG.13857.3,blat.proc3825170.chain_2390,blat.proc3825170.chain_2391,blat.proc3825170.chain_2392,blat.proc3825170.chain_2393,blat.proc3825170.chain_2394	8
scaffold_9	spliced_intron	16570130	16570300	+	asmbl_54597,asmbl_54598,asmbl_54599,asmbl_54602,asmbl_54603,asmbl_54604,asmbl_54605	none	STRG.11807.1,STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i14,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i21,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_610,blat.proc3825170.chain_611,blat.proc3825170.chain_612,blat.proc3825170.chain_615,blat.proc3825170.chain_616,blat.proc3825170.chain_617	13	Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_613,blat.proc3825170.chain_614	4
scaffold_7	spliced_intron	10536228	10536307	-	asmbl_51129	none	STRG.9229.1	1	STRG.9229.2,blat.proc3825152.chain_1578	2
scaffold_25	starts_in_intron	9561024	9561024	-	asmbl_34509,asmbl_34511	none	blat.proc3825162.chain_1068,blat.proc3825162.chain_1069	2	STRG.27775.1,blat.proc3825162.chain_1070	2
scaffold_22	starts_in_intron	10260244	10260244	-	asmbl_29591	none	blat.proc3825160.chain_2473	1	STRG.25372.1,blat.proc3825160.chain_2474,blat.proc3825160.chain_2475	3
scaffold_4	retained_intron	5653238	5653334	-	asmbl_42616,asmbl_42617,asmbl_42619,asmbl_42620,asmbl_42623,asmbl_42624,asmbl_42625	none	STRG.4472.1,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_657,blat.proc3825150.chain_658,blat.proc3825150.chain_659,blat.proc3825150.chain_663,blat.proc3825150.chain_666	9	STRG.4472.2,STRG.4472.4,blat.proc3825150.chain_662	3
scaffold_8	retained_intron	6018616	6018729	-	asmbl_51858	none	Trinity_GG_5580_c0_g1_i3,blat.proc3825152.chain_2267	2	STRG.10012.1,Trinity_GG_5580_c0_g1_i2,blat.proc3825152.chain_2269	3
scaffold_3	ends_in_intron	9845663	9845663	-	asmbl_39073	none	blat.proc3825148.chain_3340	1	STRG.3462.1,STRG.3462.2,blat.proc3825148.chain_3337,blat.proc3825148.chain_3339	4
scaffold_21	alt_acceptor	3820504	3820505	-	asmbl_27545	none	STRG.23971.2	1	STRG.23971.1,blat.proc3825160.chain_1105	2
scaffold_16	alt_acceptor	13214083	13214084	+	asmbl_16656	none	STRG.19781.3	1	STRG.19781.1,STRG.19781.2,blat.proc3825174.chain_693,blat.proc3825174.chain_695	4
scaffold_7	retained_exon	129659	129709	-	asmbl_50666	none	STRG.8595.5	1	STRG.8595.7	1
scaffold_4	skipped_exon	18793260	18795594	+	asmbl_42110	none	STRG.5471.4	1	STRG.5471.1,blat.proc3825166.chain_1795	2
scaffold_14	retained_exon	15584987	15585028	+	asmbl_12629,asmbl_12630,asmbl_12631,asmbl_12633	none	STRG.17811.2,STRG.17811.5,STRG.17811.6,STRG.17811.7	4	STRG.17811.1,STRG.17811.3,blat.proc3825172.chain_2554,blat.proc3825172.chain_2556	4
scaffold_24	retained_intron	3328681	3328826	-	asmbl_32816	none	blat.proc3825160.chain_3589	1	STRG.26530.1,blat.proc3825160.chain_3588	2
scaffold_7	spliced_intron	12387041	12387135	-	asmbl_51204,asmbl_51206,asmbl_51207,asmbl_51208,asmbl_51209,asmbl_51210	none	STRG.9338.1,blat.proc3825152.chain_1655,blat.proc3825152.chain_1657,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1660,blat.proc3825152.chain_1661	7	blat.proc3825152.chain_1654	1
scaffold_24	retained_exon	4319607	4319675	+	asmbl_32187	none	STRG.26600.2	1	STRG.26600.1	1
scaffold_5	starts_in_intron	4596254	4596254	+	asmbl_45275	none	Trinity_GG_20538_c0_g1_i2,blat.proc3825166.chain_2106	2	STRG.5907.1,STRG.5907.2,blat.proc3825166.chain_2108,blat.proc3825166.chain_2109,blat.proc3825166.chain_2110	5
scaffold_6	ends_in_intron	3229018	3229018	+	asmbl_46817,asmbl_46818	none	STRG.7331.2,blat.proc3825166.chain_3449,blat.proc3825166.chain_3451	3	blat.proc3825166.chain_3450	1
scaffold_20	starts_in_intron	9531227	9531227	+	asmbl_26861,asmbl_26862	none	Trinity_GG_30285_c0_g1_i2,blat.proc3825176.chain_644,blat.proc3825176.chain_645	3	STRG.23496.1,STRG.23496.2	2
scaffold_27	retained_intron	3000034	3000124	+	asmbl_36152,asmbl_36157	none	blat.proc3825178.chain_1902,blat.proc3825178.chain_1904	2	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	9
scaffold_11	alt_donor	1159158	1159159	+	asmbl_5329	none	blat.proc3825170.chain_1783	1	STRG.13315.1,Trinity_GG_24587_c0_g1_i1,blat.proc3825170.chain_1782,blat.proc3825170.chain_1784	4
scaffold_20	skipped_exon	8936064	8936430	-	asmbl_26013	none	STRG.23433.3	1	STRG.23433.1,STRG.23433.2	2
scaffold_9	alt_acceptor	6941760	6941761	+	asmbl_54111	none	STRG.11205.1,blat.proc3825168.chain_3733	2	STRG.11205.2	1
scaffold_5	alt_acceptor	17843985	17843986	-	asmbl_44817	none	STRG.6930.2	1	STRG.6930.1,Trinity_GG_3869_c0_g1_i1,blat.proc3825150.chain_3069	3
scaffold_6	retained_intron	14197562	14197732	+	asmbl_47590	none	Trinity_GG_21766_c0_g1_i4,blat.proc3825168.chain_611	2	blat.proc3825168.chain_612	1
scaffold_4	starts_in_intron	17571905	17571905	-	asmbl_43289	none	STRG.5346.2	1	STRG.5346.1,STRG.5346.3,blat.proc3825150.chain_1511	3
scaffold_1	alt_acceptor	3165520	3165521	+	asmbl_1572	none	STRG.199.2,Trinity_GG_17441_c0_g1_i2,blat.proc3825164.chain_289	3	STRG.199.1,STRG.199.3,Trinity_GG_17441_c0_g1_i3,blat.proc3825164.chain_290	4
scaffold_1	alt_donor	14563473	14563474	-	asmbl_941	none	STRG.1059.1,blat.proc3825148.chain_1069	2	STRG.1059.2,blat.proc3825148.chain_1068	2
scaffold_11	alt_acceptor	8103023	8103024	+	asmbl_5729,asmbl_5731,asmbl_5732	none	STRG.13823.1,STRG.13823.3,blat.proc3825170.chain_2349,blat.proc3825170.chain_2352	4	STRG.13823.2,blat.proc3825170.chain_2351	2
scaffold_23	starts_in_intron	7416630	7416630	-	asmbl_31031	none	blat.proc3825160.chain_3234	1	STRG.26062.1,blat.proc3825160.chain_3235	2
scaffold_21	spliced_intron	6616948	6617116	+	asmbl_28674	none	STRG.24188.1,blat.proc3825176.chain_1438	2	STRG.24188.2,Trinity_GG_30735_c1_g1_i1,blat.proc3825176.chain_1439	3
scaffold_7	skipped_exon	17339247	17339925	-	asmbl_51425,asmbl_51426,asmbl_51427	none	STRG.9613.1,STRG.9613.2,STRG.9613.3	3	STRG.9613.4	1
scaffold_24	alt_donor	1452902	1452903	+	asmbl_32079	none	STRG.26401.1	1	STRG.26401.3,Trinity_GG_31891_c1_g1_i1,blat.proc3825176.chain_3349	3
scaffold_7	alternate_exon	4045835	4046120	-	asmbl_50848	none	STRG.8803.3,blat.proc3825152.chain_1276	2	STRG.8803.1,blat.proc3825152.chain_1274	2
scaffold_4	starts_in_intron	13108756	13108756	-	asmbl_42970	none	blat.proc3825150.chain_1146	1	STRG.4954.1,blat.proc3825150.chain_1145	2
scaffold_15	skipped_exon	7303308	7303635	+	asmbl_15285	none	STRG.18326.2,blat.proc3825172.chain_2920	2	STRG.18326.1,blat.proc3825172.chain_2919	2
scaffold_11	retained_intron	10398883	10399063	+	asmbl_5942	none	blat.proc3825170.chain_2499	1	STRG.14049.2,blat.proc3825170.chain_2497	2
scaffold_18	retained_intron	852034	852150	-	asmbl_19605	none	blat.proc3825158.chain_1958	1	STRG.21011.1,blat.proc3825158.chain_1959,blat.proc3825158.chain_1960	3
scaffold_21	alt_donor	4105062	4105063	-	asmbl_27564	none	blat.proc3825160.chain_1126	1	blat.proc3825160.chain_1125	1
scaffold_13	retained_intron	517905	518487	+	asmbl_10487	none	STRG.15449.1,blat.proc3825172.chain_188	2	STRG.15449.2,blat.proc3825172.chain_179,blat.proc3825172.chain_182	3
scaffold_7	alt_acceptor	8073298	8073299	+	asmbl_49951,asmbl_49952,asmbl_49955	none	STRG.9047.1,STRG.9047.2,blat.proc3825168.chain_1525,blat.proc3825168.chain_1526,blat.proc3825168.chain_1527	5	STRG.9047.3	1
scaffold_22	retained_exon	4577553	4577657	+	asmbl_30023,asmbl_30024	none	STRG.24887.2,STRG.24887.3,blat.proc3825176.chain_2004,blat.proc3825176.chain_2005	4	STRG.24887.1	1
scaffold_10	spliced_intron	8347047	8347182	+	asmbl_3316	none	STRG.12601.2	1	STRG.12601.1,blat.proc3825170.chain_1156	2
scaffold_13	starts_in_intron	3783827	3783827	-	asmbl_9578	none	blat.proc3825156.chain_588	1	STRG.15709.1,blat.proc3825156.chain_587	2
scaffold_10	starts_in_intron	2719134	2719134	+	asmbl_2998,asmbl_3000	none	Trinity_GG_24012_c0_g1_i3,Trinity_GG_24012_c0_g1_i4,blat.proc3825170.chain_792,blat.proc3825170.chain_794	4	STRG.12090.1,blat.proc3825170.chain_795,blat.proc3825170.chain_796	3
scaffold_10	starts_in_intron	12672252	12672252	+	asmbl_3535	none	STRG.12859.2,blat.proc3825170.chain_1478,blat.proc3825170.chain_1479	3	STRG.12859.1,blat.proc3825170.chain_1477,blat.proc3825170.chain_1480	3
scaffold_5	alt_acceptor	9328137	9328138	-	asmbl_44270	none	STRG.6260.2	1	blat.proc3825150.chain_2374	1
scaffold_18	retained_intron	4690186	4690277	+	asmbl_20542	none	Trinity_GG_29018_c0_g1_i1,blat.proc3825174.chain_2208	2	STRG.21258.1,STRG.21258.2	2
scaffold_27	alt_acceptor	4240047	4240048	+	asmbl_36263	none	STRG.28882.1,blat.proc3825178.chain_2056	2	STRG.28882.2	1
scaffold_9	spliced_intron	12012109	12012204	+	asmbl_54407	none	STRG.11527.2	1	Trinity_GG_23759_c0_g1_i1,blat.proc3825170.chain_357	2
scaffold_5	starts_in_intron	8763431	8763431	-	asmbl_44237	none	blat.proc3825150.chain_2405	1	STRG.6212.1,STRG.6212.2,Trinity_GG_3495_c0_g1_i1,Trinity_GG_3495_c0_g1_i3,Trinity_GG_3495_c0_g1_i4,blat.proc3825150.chain_2406,blat.proc3825150.chain_2407,blat.proc3825150.chain_2408	8
scaffold_8	alt_acceptor	4239102	4239103	-	asmbl_51767,asmbl_51771	none	STRG.9906.1,blat.proc3825152.chain_2101,blat.proc3825152.chain_2104	3	blat.proc3825152.chain_2102	1
scaffold_3	starts_in_intron	11503762	11503762	+	asmbl_40352	none	Trinity_GG_19340_c0_g1_i2,blat.proc3825166.chain_106	2	STRG.3587.1,blat.proc3825166.chain_103,blat.proc3825166.chain_105	3
scaffold_10	retained_intron	4149920	4150006	-	asmbl_4265	none	STRG.12252.1,Trinity_GG_6814_c1_g1_i1,blat.proc3825154.chain_770	3	STRG.12252.2	1
scaffold_25	retained_intron	8680664	8680776	+	asmbl_33746	none	STRG.27687.1,blat.proc3825178.chain_779	2	STRG.27687.2,blat.proc3825178.chain_778	2
scaffold_16	starts_in_intron	8580055	8580055	+	asmbl_16411	none	blat.proc3825174.chain_355	1	STRG.19485.1,STRG.19485.2,blat.proc3825174.chain_353,blat.proc3825174.chain_354,blat.proc3825174.chain_356,blat.proc3825174.chain_357	6
scaffold_20	skipped_exon	9532067	9533451	+	asmbl_26864	none	STRG.23496.1	1	STRG.23496.2,blat.proc3825176.chain_642,blat.proc3825176.chain_644	3
scaffold_15	ends_in_intron	3006551	3006551	+	asmbl_15086	none	STRG.18089.2,blat.proc3825172.chain_2760	2	STRG.18089.1,blat.proc3825172.chain_2756	2
scaffold_26	retained_intron	9774294	9774402	+	asmbl_35256,asmbl_35257,asmbl_35258,asmbl_35259,asmbl_35260,asmbl_35261,asmbl_35265	none	STRG.28516.4,STRG.28516.5,Trinity_GG_33091_c0_g1_i3,blat.proc3825178.chain_1653	4	STRG.28516.6	1
scaffold_11	starts_in_intron	13304487	13304487	+	asmbl_6048	none	Trinity_GG_25143_c2_g1_i1,blat.proc3825170.chain_2744	2	STRG.14200.1,blat.proc3825170.chain_2741	2
scaffold_3	alt_donor	14495452	14495453	-	asmbl_39378	none	STRG.3790.1,Trinity_GG_2093_c0_g2_i1	2	Trinity_GG_2093_c0_g1_i1,Trinity_GG_2093_c0_g1_i2,blat.proc3825148.chain_3719,blat.proc3825148.chain_3720	4
scaffold_16	alt_donor	3829275	3829276	-	asmbl_17006	none	STRG.19188.1	1	STRG.19188.2	1
scaffold_10	alternate_exon	13283065	13283552	-	asmbl_4866	none	STRG.12922.3	1	STRG.12922.2	1
scaffold_3	retained_intron	13702911	13703499	+	asmbl_40449,asmbl_40451	none	STRG.3717.3,blat.proc3825166.chain_219,blat.proc3825166.chain_220,blat.proc3825166.chain_223	4	STRG.3717.1,STRG.3717.4,Trinity_GG_19399_c0_g1_i2,blat.proc3825166.chain_217,blat.proc3825166.chain_222	5
scaffold_17	ends_in_intron	2355134	2355134	+	asmbl_18644	none	STRG.20030.3	1	STRG.20030.1,STRG.20030.2,STRG.20030.4,STRG.20030.6,blat.proc3825174.chain_907,blat.proc3825174.chain_909	6
scaffold_15	alternate_exon	15353613	15353700	+	asmbl_15759	none	Trinity_GG_27686_c0_g1_i4,blat.proc3825172.chain_3565	2	STRG.18922.1,STRG.18922.2,blat.proc3825172.chain_3563,blat.proc3825172.chain_3564,blat.proc3825172.chain_3566	5
scaffold_15	starts_in_intron	13761158	13761158	-	asmbl_14665	none	blat.proc3825156.chain_3664	1	STRG.18808.2,STRG.18808.3,STRG.18808.4,blat.proc3825156.chain_3662,blat.proc3825156.chain_3663	5
scaffold_28	retained_intron	106950	107373	-	asmbl_37893,asmbl_37894	none	blat.proc3825162.chain_2423,blat.proc3825162.chain_2424	2	STRG.29246.1,blat.proc3825162.chain_2421,blat.proc3825162.chain_2426	3
scaffold_5	alt_donor	8069586	8069587	+	asmbl_45523,asmbl_45524	none	STRG.6170.1,STRG.6170.2,blat.proc3825166.chain_2347	3	STRG.6170.3	1
scaffold_6	spliced_intron	15095011	15095132	+	asmbl_47653	none	STRG.8271.2	1	STRG.8271.1,Trinity_GG_21867_c0_g1_i1,blat.proc3825168.chain_757	3
scaffold_4	alt_acceptor	3884506	3884507	-	asmbl_42459,asmbl_42462	none	STRG.4296.1,STRG.4296.4,blat.proc3825150.chain_531	3	STRG.4296.2,STRG.4296.3,blat.proc3825150.chain_530	3
scaffold_9	retained_intron	9706825	9707265	+	asmbl_54229	none	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_142	3	STRG.11349.2,blat.proc3825170.chain_143	2
scaffold_1	alt_acceptor	12068098	12068099	-	asmbl_685	none	STRG.825.1	1	STRG.825.3	1
scaffold_21	spliced_intron	457511	457733	-	asmbl_27321	none	STRG.23740.1,blat.proc3825160.chain_856	2	Trinity_GG_13227_c0_g1_i3,blat.proc3825160.chain_857	2
scaffold_12	alternate_exon	7507226	7507333	-	asmbl_8592	none	STRG.14832.2	1	STRG.14832.1,Trinity_GG_8280_c1_g1_i1,Trinity_GG_8280_c1_g1_i2,blat.proc3825154.chain_3352,blat.proc3825154.chain_3353	5
scaffold_3	alt_acceptor	6184099	6184100	-	asmbl_38916,asmbl_38917	none	blat.proc3825148.chain_3121,blat.proc3825148.chain_3123	2	STRG.3266.5	1
scaffold_18	spliced_intron	2759098	2759324	-	asmbl_19736,asmbl_19739	none	STRG.21136.1,blat.proc3825158.chain_2078,blat.proc3825158.chain_2079	3	STRG.21136.2,Trinity_GG_11829_c0_g1_i3,blat.proc3825158.chain_2080,blat.proc3825158.chain_2081	4
scaffold_5	alt_acceptor	2327396	2327397	-	asmbl_43886	none	STRG.5761.1,blat.proc3825150.chain_1991	2	STRG.5761.2	1
scaffold_3	spliced_intron	15573354	15573483	+	asmbl_40567,asmbl_40568	none	STRG.3847.1,STRG.3847.3,blat.proc3825166.chain_327,blat.proc3825166.chain_330	4	STRG.3847.4,blat.proc3825166.chain_328,blat.proc3825166.chain_329	3
scaffold_9	ends_in_intron	14818625	14818625	-	asmbl_55494,asmbl_55501	none	STRG.11702.7,STRG.11702.8,Trinity_GG_6457_c0_g1_i2,blat.proc3825154.chain_158	4	STRG.11702.1,STRG.11702.3,blat.proc3825154.chain_160,blat.proc3825154.chain_161	4
scaffold_26	alt_donor	4455623	4455624	+	asmbl_34906,asmbl_34907	none	STRG.28164.2,STRG.28164.3,blat.proc3825178.chain_1245	3	STRG.28164.1,blat.proc3825178.chain_1244	2
scaffold_19	retained_intron	13007510	13007842	+	asmbl_21839	none	Trinity_GG_29821_c0_g1_i3,blat.proc3825174.chain_3648	2	STRG.22623.1,Trinity_GG_29821_c0_g1_i14,Trinity_GG_29821_c0_g1_i5,Trinity_GG_29821_c0_g1_i6,Trinity_GG_29821_c0_g1_i8,blat.proc3825174.chain_3643,blat.proc3825174.chain_3644,blat.proc3825174.chain_3649,blat.proc3825174.chain_3652	9
scaffold_25	alt_acceptor	842568	842569	-	asmbl_34007	none	STRG.27140.2	1	STRG.27140.1,blat.proc3825162.chain_517	2
scaffold_1	spliced_intron	12788561	12788665	-	asmbl_763,asmbl_764,asmbl_765	none	STRG.901.1,STRG.901.3,blat.proc3825148.chain_882,blat.proc3825148.chain_884	4	STRG.901.2,blat.proc3825148.chain_885	2
scaffold_6	alt_donor	13919161	13919162	-	asmbl_48958	none	STRG.8139.4	1	STRG.8139.2,blat.proc3825152.chain_569	2
scaffold_21	alternate_exon	6476233	6476259	-	asmbl_27725	none	STRG.24168.2	1	STRG.24168.1,blat.proc3825160.chain_1313	2
scaffold_8	ends_in_intron	7448471	7448471	-	asmbl_51907	none	blat.proc3825152.chain_2246	1	STRG.10069.1,blat.proc3825152.chain_2248,blat.proc3825152.chain_2249	3
scaffold_1	alt_donor	20687779	20687780	-	asmbl_1190	none	STRG.1410.1	1	blat.proc3825148.chain_1342	1
scaffold_8	retained_intron	6028190	6028278	+	asmbl_52930	none	blat.proc3825168.chain_2614	1	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2613	4
scaffold_2	alternate_exon	862960	863545	+	asmbl_24115	none	blat.proc3825164.chain_1703	1	STRG.1562.3	1
scaffold_9	retained_exon	9722941	9723030	+	asmbl_54243	none	STRG.11350.1,blat.proc3825170.chain_151	2	blat.proc3825170.chain_150	1
scaffold_18	alt_acceptor	7661993	7661994	+	asmbl_20763,asmbl_20767	none	STRG.21471.1,STRG.21471.2	2	STRG.21471.4,STRG.21471.5,STRG.21471.6	3
scaffold_1	alt_donor	7803398	7803399	-	asmbl_441	none	STRG.543.1,blat.proc3825148.chain_488	2	STRG.543.2	1
scaffold_28	ends_in_intron	7186882	7186882	-	asmbl_38380,asmbl_38381	none	STRG.29778.2,blat.proc3825162.chain_2968	2	STRG.29778.1	1
scaffold_7	alt_donor	4915842	4915843	+	asmbl_49761	none	STRG.8836.2	1	STRG.8836.4	1
scaffold_9	alternate_exon	1705079	1705132	-	asmbl_54838	none	STRG.10868.1	1	STRG.10868.2	1
scaffold_11	retained_intron	8790198	8790335	-	asmbl_6876	none	STRG.13904.2	1	STRG.13904.3	1
scaffold_24	starts_in_intron	6091916	6091916	-	asmbl_32930	none	blat.proc3825162.chain_53	1	blat.proc3825162.chain_51	1
scaffold_9	alternate_exon	9615591	9616632	-	asmbl_55219	none	STRG.11330.2	1	STRG.11330.1,blat.proc3825152.chain_3607	2
scaffold_9	ends_in_intron	12635088	12635088	+	asmbl_54453,asmbl_54454	none	STRG.11586.4,STRG.11586.5	2	STRG.11586.1,STRG.11586.2,STRG.11586.3,blat.proc3825170.chain_403,blat.proc3825170.chain_405,blat.proc3825170.chain_406	6
scaffold_1	alt_acceptor	4567214	4567215	-	asmbl_198,asmbl_200	none	STRG.285.1,STRG.285.2,blat.proc3825148.chain_153	3	STRG.285.4	1
scaffold_10	alt_acceptor	5686329	5686330	+	asmbl_3191,asmbl_3192	none	STRG.12396.1,STRG.12396.2,blat.proc3825170.chain_1001	3	STRG.12396.3	1
scaffold_7	retained_intron	15595021	15595243	+	asmbl_50447	none	STRG.9560.1,blat.proc3825168.chain_2061	2	STRG.9560.2,Trinity_GG_22613_c0_g1_i1,blat.proc3825168.chain_2062	3
scaffold_13	alt_acceptor	7443184	7443185	+	asmbl_11049,asmbl_11050	none	STRG.16040.2,blat.proc3825172.chain_751,blat.proc3825172.chain_752	3	STRG.16040.1	1
scaffold_23	retained_exon	5618925	5619809	-	asmbl_30927	none	STRG.25937.3,blat.proc3825160.chain_3058	2	STRG.25937.4,Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057	3
scaffold_5	alt_acceptor	18221513	18221514	+	asmbl_46218,asmbl_46219,asmbl_46221,asmbl_46222	none	STRG.6959.1,STRG.6959.2,STRG.6959.4,STRG.6959.5,blat.proc3825166.chain_3166,blat.proc3825166.chain_3167	6	STRG.6959.3	1
scaffold_5	alt_donor	12237961	12237962	+	asmbl_45786	none	STRG.6462.1,blat.proc3825166.chain_2627	2	STRG.6462.2,blat.proc3825166.chain_2629	2
scaffold_4	alt_donor	5648952	5648953	-	asmbl_42626	none	blat.proc3825150.chain_670	1	STRG.4472.1,blat.proc3825150.chain_669	2
scaffold_3	spliced_intron	10276182	10276586	+	asmbl_40247,asmbl_40250,asmbl_40253,asmbl_40255,asmbl_40256,asmbl_40257	none	STRG.3467.1,STRG.3467.3,Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3727,blat.proc3825164.chain_3728,blat.proc3825164.chain_3730,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734,blat.proc3825164.chain_3736	9	blat.proc3825164.chain_3735	1
scaffold_4	alt_acceptor	1980880	1980881	+	asmbl_41153	none	STRG.4215.1,blat.proc3825166.chain_615	2	STRG.4215.3	1
scaffold_10	alternate_exon	13283808	13288431	-	asmbl_4865	none	STRG.12922.2,blat.proc3825154.chain_1546	2	STRG.12922.3	1
scaffold_2	alternate_exon	9189151	9189963	-	asmbl_23360,asmbl_23362,asmbl_23365	none	STRG.2171.2,blat.proc3825148.chain_2198,blat.proc3825148.chain_2201,blat.proc3825148.chain_2203	4	blat.proc3825148.chain_2202	1
scaffold_25	ends_in_intron	5814166	5814166	-	asmbl_34282	none	STRG.27473.2,blat.proc3825162.chain_838	2	STRG.27473.1,blat.proc3825162.chain_839,blat.proc3825162.chain_841	3
scaffold_2	retained_exon	7408529	7408927	-	asmbl_23253,asmbl_23255	none	STRG.2065.4,Trinity_GG_1101_c0_g1_i5,blat.proc3825148.chain_1986	3	STRG.2065.3,STRG.2065.6,Trinity_GG_1101_c0_g1_i4,blat.proc3825148.chain_1982	4
scaffold_7	alt_acceptor	18351035	18351036	-	asmbl_51458,asmbl_51459	none	STRG.9663.1,STRG.9663.2	2	STRG.9663.3	1
scaffold_1	retained_intron	5739339	5739419	+	asmbl_1779,asmbl_1780,asmbl_1781,asmbl_1782	none	blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528,blat.proc3825164.chain_529	4	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_530	4
scaffold_5	retained_intron	14124759	14124862	-	asmbl_44590	none	blat.proc3825166.chain_2774	1	STRG.6623.1	1
scaffold_16	spliced_intron	433381	433451	-	asmbl_16869,asmbl_16870,asmbl_16872,asmbl_16873,asmbl_16875,asmbl_16876,asmbl_16877,asmbl_16879,asmbl_16880	none	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_197,blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_201,blat.proc3825158.chain_202,blat.proc3825158.chain_203,blat.proc3825158.chain_204	9	blat.proc3825158.chain_196,blat.proc3825158.chain_200	2
scaffold_6	alt_acceptor	13357452	13357453	-	asmbl_48906	none	STRG.8094.2,blat.proc3825152.chain_509	2	STRG.8094.1,blat.proc3825152.chain_508	2
scaffold_13	alt_acceptor	6050053	6050054	-	asmbl_9763,asmbl_9765	none	STRG.15915.1,STRG.15915.4,blat.proc3825156.chain_782,blat.proc3825156.chain_784	4	STRG.15915.5,blat.proc3825156.chain_778	2
scaffold_8	alt_donor	12410549	12410550	+	asmbl_53308,asmbl_53311	none	STRG.10430.1,STRG.10430.2,Trinity_GG_23094_c0_g1_i1,blat.proc3825168.chain_2954	4	STRG.10430.3	1
scaffold_9	starts_in_intron	9682940	9682940	-	asmbl_55233	none	STRG.11342.1	1	blat.proc3825152.chain_3604	1
scaffold_23	alternate_exon	760176	760209	-	asmbl_30604	none	Trinity_GG_14294_c0_g1_i2	1	STRG.25568.1,blat.proc3825160.chain_2711	2
scaffold_1	spliced_intron	14350452	14350634	-	asmbl_893,asmbl_894,asmbl_897	none	STRG.1033.1,STRG.1033.2,blat.proc3825148.chain_1023,blat.proc3825148.chain_1025,blat.proc3825148.chain_1026	5	blat.proc3825148.chain_1024	1
scaffold_7	alt_acceptor	18400071	18400072	+	asmbl_50521	none	STRG.9669.2,blat.proc3825168.chain_2181	2	STRG.9669.1,STRG.9669.3,blat.proc3825168.chain_2179,blat.proc3825168.chain_2182	4
scaffold_2	starts_in_intron	1494292	1494292	+	asmbl_24207	none	Trinity_GG_18263_c0_g1_i2,blat.proc3825164.chain_1832	2	STRG.1622.1,STRG.1622.2	2
scaffold_23	starts_in_intron	2207673	2207673	-	asmbl_30708	none	blat.proc3825160.chain_2878	1	STRG.25698.1,STRG.25698.2,STRG.25698.3,STRG.25698.4,STRG.25698.5,STRG.25698.6	6
scaffold_4	alt_acceptor	16912454	16912455	+	asmbl_42010	none	STRG.5280.3	1	STRG.5280.1,STRG.5280.2	2
scaffold_2	starts_in_intron	3898545	3898545	+	asmbl_24319,asmbl_24322	none	blat.proc3825164.chain_2002,blat.proc3825164.chain_2003	2	STRG.1826.2,blat.proc3825164.chain_2000	2
scaffold_12	retained_exon	7171955	7172892	+	asmbl_7721,asmbl_7723	none	STRG.14794.2,blat.proc3825170.chain_3304,blat.proc3825170.chain_3305	3	STRG.14794.1	1
scaffold_11	retained_intron	9926131	9926272	+	asmbl_5922	none	blat.proc3825170.chain_2580	1	STRG.14011.1,Trinity_GG_25046_c1_g1_i2,blat.proc3825170.chain_2579	3
scaffold_19	alt_acceptor	12956143	12956144	-	asmbl_22564,asmbl_22565,asmbl_22566,asmbl_22568	none	STRG.22612.1,Trinity_GG_12582_c0_g1_i4,Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3403,blat.proc3825158.chain_3404	7	Trinity_GG_12582_c0_g1_i2,blat.proc3825158.chain_3401	2
scaffold_14	alternate_exon	6909278	6909666	+	asmbl_12115	none	blat.proc3825172.chain_1912	1	blat.proc3825172.chain_1910	1
scaffold_16	starts_in_intron	12642776	12642776	-	asmbl_17396	none	blat.proc3825158.chain_799	1	STRG.19758.1,blat.proc3825158.chain_798	2
scaffold_23	retained_intron	6633740	6633978	+	asmbl_31636	none	blat.proc3825176.chain_2895	1	STRG.26012.1,STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897,blat.proc3825176.chain_2898	6
scaffold_18	retained_exon	7172462	7172566	-	asmbl_19927,asmbl_19929	none	STRG.21417.1,STRG.21417.3,Trinity_GG_11987_c0_g1_i3,blat.proc3825158.chain_2333	4	STRG.21417.2,Trinity_GG_11987_c0_g1_i5,blat.proc3825158.chain_2335	3
scaffold_13	retained_intron	3736104	3736197	+	asmbl_10735	none	Trinity_GG_25941_c0_g1_i11,blat.proc3825172.chain_442	2	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_445,blat.proc3825172.chain_446,blat.proc3825172.chain_448,blat.proc3825172.chain_449	13
scaffold_19	starts_in_intron	7582333	7582333	+	asmbl_21475	none	Trinity_GG_29596_c0_g1_i3,blat.proc3825174.chain_3237	2	STRG.22236.3,Trinity_GG_29596_c0_g1_i2,blat.proc3825174.chain_3234	3
scaffold_20	starts_in_intron	8003128	8003128	-	asmbl_25950	none	STRG.23349.1,blat.proc3825160.chain_428	2	STRG.23349.2	1
scaffold_2	retained_intron	8874291	8874378	+	asmbl_24655,asmbl_24656	none	STRG.2139.1,blat.proc3825164.chain_2329,blat.proc3825164.chain_2330	3	STRG.2139.2,STRG.2139.3,blat.proc3825164.chain_2328,blat.proc3825164.chain_2331	4
scaffold_25	alternate_exon	7322670	7322717	-	asmbl_34398	none	blat.proc3825178.chain_653	1	STRG.27581.1,STRG.27581.2,STRG.27581.4	3
scaffold_3	alt_acceptor	13544246	13544247	-	asmbl_39273	none	STRG.3703.1,blat.proc3825148.chain_3551	2	STRG.3703.2,blat.proc3825148.chain_3550	2
scaffold_14	alt_acceptor	8046530	8046531	+	asmbl_12201	none	STRG.17225.1,blat.proc3825172.chain_1998	2	STRG.17225.2	1
scaffold_15	alt_donor	6958499	6958500	-	asmbl_14271,asmbl_14272	none	STRG.18300.1,STRG.18300.2,blat.proc3825156.chain_3145,blat.proc3825156.chain_3147	4	STRG.18300.3,blat.proc3825156.chain_3146	2
scaffold_8	starts_in_intron	11954962	11954962	+	asmbl_53295	none	Trinity_GG_23095_c0_g1_i2,blat.proc3825168.chain_2961	2	STRG.10399.1,STRG.10399.2,blat.proc3825168.chain_2957,blat.proc3825168.chain_2958	4
scaffold_11	alternate_exon	9185245	9185889	-	asmbl_6920	none	Trinity_GG_7784_c0_g2_i1,blat.proc3825154.chain_2474	2	STRG.13963.1,Trinity_GG_7784_c0_g1_i2,blat.proc3825154.chain_2472	3
scaffold_3	alt_donor	3834945	3834946	-	asmbl_38787	none	STRG.3105.2,blat.proc3825148.chain_2975	2	STRG.3105.1,blat.proc3825148.chain_2974	2
scaffold_26	skipped_exon	6350865	6351295	-	asmbl_35682	none	STRG.28335.5	1	STRG.28335.1,STRG.28335.2,STRG.28335.3,blat.proc3825162.chain_1570	4
scaffold_8	retained_intron	14134530	14135737	-	asmbl_52295,asmbl_52296	none	STRG.10519.2,STRG.10519.3,Trinity_GG_5842_c0_g1_i1,blat.proc3825152.chain_2759,blat.proc3825152.chain_2761	5	STRG.10519.1	1
scaffold_10	retained_intron	2666399	2667073	+	asmbl_2986,asmbl_2987	none	STRG.12087.1,Trinity_GG_24040_c1_g1_i1,blat.proc3825170.chain_844,blat.proc3825170.chain_845	4	STRG.12087.2,blat.proc3825170.chain_843	2
scaffold_5	retained_exon	11990896	11990961	-	asmbl_44427,asmbl_44428,asmbl_44429,asmbl_44431,asmbl_44432,asmbl_44435	none	STRG.6453.1,STRG.6453.2,STRG.6453.4,STRG.6453.5,STRG.6453.9,blat.proc3825150.chain_2612,blat.proc3825150.chain_2614,blat.proc3825150.chain_2615	8	STRG.6453.8,blat.proc3825150.chain_2611,blat.proc3825150.chain_2613	3
scaffold_15	ends_in_intron	14331159	14331159	-	asmbl_14714	none	Trinity_GG_10597_c2_g1_i1,blat.proc3825156.chain_3723	2	Trinity_GG_10597_c0_g1_i1,Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712,blat.proc3825156.chain_3714	4
scaffold_17	spliced_intron	8221394	8221539	+	asmbl_18954,asmbl_18955,asmbl_18956	none	STRG.20449.3,blat.proc3825174.chain_1244,blat.proc3825174.chain_1245	3	STRG.20449.4	1
scaffold_4	skipped_exon	17128737	17129758	-	asmbl_43260	none	STRG.5313.1,Trinity_GG_2969_c0_g1_i2	2	STRG.5313.2,blat.proc3825150.chain_1491	2
scaffold_103	alt_donor	6747	6748	+	asmbl_5236	none	STRG.30142.2	1	STRG.30142.1,blat.proc3825178.chain_3265	2
scaffold_12	retained_intron	9987993	9988214	-	asmbl_8710	none	Trinity_GG_8331_c0_g1_i3,blat.proc3825154.chain_3437	2	STRG.14972.3,blat.proc3825154.chain_3439,blat.proc3825154.chain_3440	3
scaffold_6	retained_intron	15945018	15945059	+	asmbl_47679	none	STRG.8324.1	1	STRG.8324.3,STRG.8324.4	2
scaffold_27	retained_intron	381928	382157	-	asmbl_36681	none	STRG.28567.2,blat.proc3825162.chain_1732	2	STRG.28567.4,blat.proc3825162.chain_1736	2
scaffold_28	alt_acceptor	7275908	7275909	-	asmbl_38386	none	STRG.29796.3	1	blat.proc3825162.chain_3016	1
scaffold_27	alt_acceptor	1554779	1554780	+	asmbl_36027,asmbl_36029	none	STRG.28644.1,STRG.28644.2,blat.proc3825178.chain_1762	3	STRG.28644.3,STRG.28644.4	2
scaffold_7	alt_donor	13197768	13197769	-	asmbl_51297,asmbl_51298,asmbl_51300	none	STRG.9431.1,blat.proc3825152.chain_1783,blat.proc3825152.chain_1785,blat.proc3825152.chain_1788	4	blat.proc3825152.chain_1787	1
scaffold_20	starts_in_intron	726500	726500	+	asmbl_26377	none	Trinity_GG_29874_c0_g1_i2	1	STRG.22777.2	1
scaffold_17	alternate_exon	9030392	9031146	-	asmbl_18139	none	STRG.20532.2,blat.proc3825158.chain_1576	2	STRG.20532.3	1
scaffold_1	spliced_intron	9513340	9513605	-	asmbl_535	none	STRG.635.1,blat.proc3825148.chain_624	2	blat.proc3825148.chain_625	1
scaffold_1	retained_intron	20742516	20742758	-	asmbl_1202	none	blat.proc3825148.chain_1413	1	blat.proc3825148.chain_1414	1
scaffold_26	ends_in_intron	9749923	9749923	+	asmbl_35255	none	STRG.28515.1	1	STRG.28515.2	1
scaffold_15	starts_in_intron	2443977	2443977	-	asmbl_14008	none	Trinity_GG_10068_c0_g1_i1,blat.proc3825156.chain_2736	2	STRG.18024.1	1
scaffold_25	alt_acceptor	3185693	3185694	-	asmbl_34112,asmbl_34113	none	STRG.27258.2,blat.proc3825162.chain_578	2	STRG.27258.1,STRG.27258.3,blat.proc3825162.chain_576,blat.proc3825162.chain_577	4
scaffold_2	spliced_intron	885176	885305	+	asmbl_24124,asmbl_24125,asmbl_24126	none	STRG.1564.2,STRG.1564.3,blat.proc3825164.chain_1624	3	blat.proc3825164.chain_1623	1
scaffold_2	spliced_intron	9886597	9886832	-	asmbl_23402	none	blat.proc3825148.chain_2166	1	STRG.2192.1,blat.proc3825148.chain_2165,blat.proc3825148.chain_2167	3
scaffold_19	starts_in_intron	6106952	6106952	+	asmbl_21388	none	blat.proc3825174.chain_3166	1	STRG.22138.1,blat.proc3825174.chain_3167	2
scaffold_16	retained_intron	325937	326065	-	asmbl_16857,asmbl_16860	none	blat.proc3825158.chain_168,blat.proc3825158.chain_171	2	STRG.19029.1,STRG.19029.2,blat.proc3825158.chain_167,blat.proc3825158.chain_169,blat.proc3825158.chain_170,blat.proc3825158.chain_172	6
scaffold_28	spliced_intron	9641239	9641325	+	asmbl_37797	none	STRG.29992.1,blat.proc3825162.chain_3624,blat.proc3825178.chain_3132	3	STRG.29992.2	1
scaffold_9	retained_intron	16559310	16560403	-	asmbl_55580,asmbl_55581,asmbl_55582	none	STRG.11806.3,STRG.11806.4,STRG.11806.6,Trinity_GG_6524_c0_g2_i1,Trinity_GG_6524_c0_g2_i2,Trinity_GG_6524_c2_g1_i1,blat.proc3825154.chain_275,blat.proc3825154.chain_276,blat.proc3825154.chain_278	9	STRG.11806.5	1
scaffold_18	retained_intron	8400595	8401901	+	asmbl_20835,asmbl_20838	none	STRG.21513.4,blat.proc3825174.chain_2583	2	STRG.21513.1,blat.proc3825174.chain_2580	2
scaffold_1	alternate_exon	9194576	9194657	+	asmbl_1961	none	STRG.610.3	1	STRG.610.1,STRG.610.2,Trinity_GG_17701_c0_g1_i1,Trinity_GG_17701_c0_g1_i2,blat.proc3825164.chain_756,blat.proc3825164.chain_757	6
scaffold_21	alternate_exon	5776477	5779864	-	asmbl_27691,asmbl_27694	none	STRG.24114.1,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199	3	blat.proc3825160.chain_1201,blat.proc3825160.chain_1204	2
scaffold_11	spliced_intron	9832014	9832313	+	asmbl_5906,asmbl_5907,asmbl_5909,asmbl_5913	none	STRG.14008.1,STRG.14008.2,STRG.14008.3,blat.proc3825170.chain_2556,blat.proc3825170.chain_2557,blat.proc3825170.chain_2565	6	STRG.14008.5,Trinity_GG_25038_c0_g1_i2,blat.proc3825170.chain_2558,blat.proc3825170.chain_2559,blat.proc3825170.chain_2564	5
scaffold_5	retained_intron	16018359	16018649	-	asmbl_44738	none	STRG.6788.2,Trinity_GG_3751_c0_g1_i4,blat.proc3825150.chain_2868	3	STRG.6788.1,blat.proc3825150.chain_2866	2
scaffold_2	spliced_intron	14276152	14276257	+	asmbl_24897,asmbl_24903	none	STRG.2428.1,blat.proc3825164.chain_2591,blat.proc3825164.chain_2597	3	STRG.2428.3,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596	4
scaffold_17	retained_intron	4267993	4268192	+	asmbl_18779	none	Trinity_GG_28385_c0_g2_i1,blat.proc3825174.chain_1079	2	STRG.20175.1,blat.proc3825174.chain_1078	2
scaffold_15	skipped_exon	6888065	6888716	-	asmbl_14267	none	STRG.18301.7	1	STRG.18301.1,STRG.18301.2,STRG.18301.3,STRG.18301.4,STRG.18301.5,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	10
scaffold_16	spliced_intron	14512399	14512482	-	asmbl_17447,asmbl_17448	none	STRG.19830.1,blat.proc3825158.chain_874,blat.proc3825158.chain_875	3	blat.proc3825158.chain_877	1
scaffold_23	alternate_exon	7658152	7664410	+	asmbl_31706	none	blat.proc3825176.chain_2988	1	blat.proc3825176.chain_2989	1
scaffold_7	alternate_exon	11916907	11920811	-	asmbl_51176	none	STRG.9299.2,Trinity_GG_5242_c0_g1_i3,Trinity_GG_5242_c1_g1_i1,blat.proc3825152.chain_1651,blat.proc3825152.chain_1653	5	STRG.9299.3,blat.proc3825152.chain_1650	2
scaffold_2258	skipped_exon	403	1245	-	asmbl_30560	none	STRG.30733.2	1	STRG.30733.1	1
scaffold_2	ends_in_intron	14535486	14535486	+	asmbl_24947	none	blat.proc3825164.chain_2721	1	STRG.2455.1,STRG.2455.2,STRG.2455.3,blat.proc3825164.chain_2722,blat.proc3825164.chain_2723	5
scaffold_4	starts_in_intron	7649287	7649287	+	asmbl_41510	none	Trinity_GG_19871_c0_g1_i3,blat.proc3825166.chain_1067	2	STRG.4595.1,Trinity_GG_19871_c0_g1_i2,blat.proc3825166.chain_1066	3
scaffold_2	spliced_intron	899505	899602	+	asmbl_24147,asmbl_24149,asmbl_24150	none	STRG.1569.1,STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721	5	STRG.1569.2,Trinity_GG_18211_c0_g1_i4	2
scaffold_14	spliced_intron	15565823	15565849	+	asmbl_12619,asmbl_12625	none	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	3	STRG.17796.1,STRG.17796.2,STRG.17796.3	3
scaffold_10	retained_intron	16475945	16476026	-	asmbl_5005,asmbl_5008	none	STRG.13119.2,Trinity_GG_7353_c0_g1_i2,blat.proc3825154.chain_1717	3	STRG.13119.4	1
scaffold_14	starts_in_intron	6291951	6291951	+	asmbl_12068	none	blat.proc3825172.chain_1846	1	STRG.17083.1,Trinity_GG_26712_c0_g1_i1,Trinity_GG_26712_c0_g1_i5,blat.proc3825172.chain_1842,blat.proc3825172.chain_1843,blat.proc3825172.chain_1844	6
scaffold_5	alternate_exon	4697494	4697633	+	asmbl_45284	none	STRG.5925.5,blat.proc3825166.chain_2151	2	STRG.5925.4	1
scaffold_27	alt_donor	980854	980855	+	asmbl_35977	none	STRG.28596.1,Trinity_GG_33132_c0_g1_i3,blat.proc3825178.chain_1711	3	STRG.28596.2	1
scaffold_25	retained_exon	9119847	9119957	+	asmbl_33787	none	STRG.27725.6	1	STRG.27725.3,STRG.27725.5	2
scaffold_27	alt_donor	5015680	5015681	+	asmbl_36335	none	STRG.28933.1,blat.proc3825178.chain_2137	2	STRG.28933.2,STRG.28933.3,Trinity_GG_33329_c0_g1_i3,blat.proc3825178.chain_2138,blat.proc3825178.chain_2139	5
scaffold_6	retained_intron	14512780	14513103	-	asmbl_49011	none	Trinity_GG_4661_c0_g1_i2,blat.proc3825152.chain_634	2	STRG.8219.2	1
scaffold_12	spliced_intron	14104565	14104838	-	asmbl_8980,asmbl_8981,asmbl_8982,asmbl_8985	none	Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_88,blat.proc3825156.chain_95,blat.proc3825156.chain_96,blat.proc3825156.chain_97	6	Trinity_GG_8557_c0_g1_i17,blat.proc3825156.chain_90	2
scaffold_15	starts_in_intron	12598832	12598832	-	asmbl_14588	none	blat.proc3825156.chain_3578	1	STRG.18712.1,blat.proc3825156.chain_3573,blat.proc3825156.chain_3577	3
scaffold_8	retained_exon	9867562	9867573	+	asmbl_53119,asmbl_53120	none	blat.proc3825168.chain_2818,blat.proc3825168.chain_2819	2	STRG.10233.2,blat.proc3825168.chain_2817,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	4
scaffold_9	starts_in_intron	9663322	9663322	-	asmbl_55231	none	blat.proc3825152.chain_3621	1	STRG.11345.1,blat.proc3825152.chain_3619	2
scaffold_27	alt_donor	5671461	5671462	-	asmbl_37014	none	blat.proc3825162.chain_2152	1	STRG.28975.1,blat.proc3825162.chain_2153	2
scaffold_13	alt_donor	8953412	8953413	-	asmbl_10002	none	STRG.16166.2,blat.proc3825156.chain_1078	2	STRG.16166.1,blat.proc3825156.chain_1079	2
scaffold_25	alt_acceptor	7220043	7220044	-	asmbl_34389	none	STRG.27575.1,blat.proc3825162.chain_972,blat.proc3825162.chain_973	3	STRG.27575.2	1
scaffold_20	starts_in_intron	9446438	9446438	-	asmbl_26034	none	STRG.23485.1,blat.proc3825160.chain_569,blat.proc3825160.chain_570	3	STRG.23485.2,blat.proc3825160.chain_571	2
scaffold_1	skipped_exon	13634564	13635831	+	asmbl_2311	none	STRG.981.2,blat.proc3825164.chain_1146	2	STRG.981.1	1
scaffold_2747	starts_in_intron	622	622	+	asmbl_37242	none	blat.proc3825178.chain_3700	1	STRG.30785.1	1
scaffold_23	alt_donor	6618879	6618880	+	asmbl_31631,asmbl_31633	none	STRG.26010.1,blat.proc3825176.chain_2886,blat.proc3825176.chain_2888	3	Trinity_GG_31628_c0_g1_i2,blat.proc3825176.chain_2887	2
scaffold_1	alt_donor	9516389	9516390	-	asmbl_538	none	STRG.637.4,Trinity_GG_338_c0_g1_i2,blat.proc3825148.chain_629	3	blat.proc3825148.chain_628	1
scaffold_11	alt_donor	10396924	10396925	+	asmbl_5940,asmbl_5943	none	STRG.14049.2,blat.proc3825170.chain_2496	2	STRG.14049.1,blat.proc3825170.chain_2497,blat.proc3825170.chain_2498,blat.proc3825170.chain_2499	4
scaffold_21	spliced_intron	7600965	7601224	+	asmbl_28754	none	STRG.24297.1,blat.proc3825176.chain_1515	2	STRG.24297.3,blat.proc3825176.chain_1517	2
scaffold_7	alt_donor	3336958	3336959	-	asmbl_50789	none	STRG.8738.3,blat.proc3825152.chain_1205	2	STRG.8738.2,blat.proc3825152.chain_1207	2
scaffold_1	skipped_exon	11173731	11174990	+	asmbl_2082,asmbl_2083	none	STRG.747.3,blat.proc3825164.chain_914	2	STRG.747.5,blat.proc3825164.chain_912	2
scaffold_2	retained_intron	5392157	5392284	-	asmbl_23148	none	blat.proc3825148.chain_1876	1	STRG.1948.1,blat.proc3825148.chain_1875,blat.proc3825148.chain_1877	3
scaffold_2	ends_in_intron	14643414	14643414	+	asmbl_24968	none	blat.proc3825164.chain_2728	1	STRG.2460.1,STRG.2460.2	2
scaffold_22	spliced_intron	11404015	11404118	+	asmbl_30380,asmbl_30382	none	STRG.25476.1,blat.proc3825176.chain_2464	2	STRG.25476.2	1
scaffold_27	alternate_exon	5783649	5783781	-	asmbl_37018	none	STRG.28980.2	1	STRG.28980.1	1
scaffold_8	alt_acceptor	17666939	17666940	-	asmbl_52480	none	STRG.10680.2	1	STRG.10680.1,blat.proc3825152.chain_2946	2
scaffold_23	alt_acceptor	10893532	10893533	-	asmbl_31167	none	STRG.26289.2,blat.proc3825160.chain_3409	2	STRG.26289.1,STRG.26289.3,blat.proc3825160.chain_3408	3
scaffold_13	retained_intron	9896483	9896567	-	asmbl_10044	none	blat.proc3825156.chain_1126	1	STRG.16234.1,blat.proc3825156.chain_1127	2
scaffold_4	starts_in_intron	4414008	4414008	+	asmbl_41258	none	blat.proc3825166.chain_842	1	STRG.4349.1,STRG.4349.4,blat.proc3825166.chain_841,blat.proc3825166.chain_851	4
scaffold_2	retained_intron	13064806	13065021	+	asmbl_24811,asmbl_24812	none	STRG.2332.1,blat.proc3825164.chain_2495,blat.proc3825164.chain_2496,blat.proc3825164.chain_2498,blat.proc3825164.chain_2500	5	STRG.2332.2,blat.proc3825164.chain_2494,blat.proc3825164.chain_2497	3
scaffold_8	spliced_intron	4860713	4860934	-	asmbl_51812,asmbl_51814	none	STRG.9948.1,Trinity_GG_5566_c0_g1_i2,blat.proc3825152.chain_2240,blat.proc3825152.chain_2241	4	Trinity_GG_5566_c0_g2_i1,blat.proc3825152.chain_2242	2
scaffold_23	alt_acceptor	805269	805270	-	asmbl_30609,asmbl_30611	none	STRG.25583.1,STRG.25583.2	2	STRG.25583.3	1
scaffold_1	retained_intron	13538442	13538687	-	asmbl_824	none	blat.proc3825148.chain_931	1	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_933	5
scaffold_27	starts_in_intron	4505833	4505833	+	asmbl_36294	none	STRG.28902.2	1	STRG.28902.1	1
scaffold_11	alternate_exon	6763611	6766974	-	asmbl_6743	none	STRG.13715.1,blat.proc3825154.chain_2283	2	STRG.13715.2,blat.proc3825154.chain_2282	2
scaffold_16	spliced_intron	1236351	1236851	-	asmbl_16928,asmbl_16929	none	STRG.19083.1,blat.proc3825158.chain_218,blat.proc3825158.chain_219	3	blat.proc3825158.chain_220	1
scaffold_6	ends_in_intron	11500016	11500016	+	asmbl_47337	none	blat.proc3825168.chain_337	1	STRG.7947.1,Trinity_GG_21639_c0_g3_i1,blat.proc3825168.chain_340	3
scaffold_9	spliced_intron	13323052	13323206	-	asmbl_55441	none	STRG.11635.2,blat.proc3825154.chain_98	2	STRG.11635.1,Trinity_GG_6417_c0_g1_i1,blat.proc3825154.chain_97	3
scaffold_28	starts_in_intron	7530816	7530816	+	asmbl_37690	none	Trinity_GG_33836_c0_g1_i1,blat.proc3825178.chain_2989	2	STRG.29834.1,blat.proc3825178.chain_2986,blat.proc3825178.chain_2987,blat.proc3825178.chain_2990	4
scaffold_13	alt_donor	6433916	6433917	-	asmbl_9790,asmbl_9792,asmbl_9793,asmbl_9794	none	STRG.15943.1,blat.proc3825156.chain_845,blat.proc3825156.chain_847,blat.proc3825156.chain_850	4	STRG.15943.2	1
scaffold_3	alt_donor	14313189	14313190	-	asmbl_39353	none	STRG.3771.3	1	STRG.3771.1,STRG.3771.2,Trinity_GG_2080_c0_g1_i2,blat.proc3825148.chain_3677,blat.proc3825148.chain_3678	5
scaffold_4	alt_acceptor	15031824	15031825	+	asmbl_41923	none	blat.proc3825166.chain_1542	1	blat.proc3825166.chain_1543	1
scaffold_12	alternate_exon	5466481	5466627	-	asmbl_8499,asmbl_8500	none	STRG.14703.3,STRG.14703.4,blat.proc3825154.chain_3237	3	STRG.14703.1,STRG.14703.2,STRG.14703.5,blat.proc3825154.chain_3235,blat.proc3825154.chain_3236	5
scaffold_18	alternate_exon	4561847	4566370	-	asmbl_19809	none	STRG.21245.2	1	STRG.21245.1	1
scaffold_22	alt_acceptor	10680946	10680947	-	asmbl_29617	none	blat.proc3825160.chain_2610	1	STRG.25415.1,STRG.25415.2,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608	4
scaffold_24	ends_in_intron	6446031	6446031	+	asmbl_32312	none	blat.proc3825176.chain_3610	1	STRG.26699.1,STRG.26699.2,blat.proc3825176.chain_3611,blat.proc3825176.chain_3613,blat.proc3825176.chain_3617,blat.proc3825176.chain_3618,blat.proc3825176.chain_3620	7
scaffold_20	retained_exon	6716651	6716790	+	asmbl_26670	none	blat.proc3825176.chain_404	1	STRG.23248.2	1
scaffold_5	ends_in_intron	6188482	6188482	+	asmbl_45406	none	blat.proc3825166.chain_2256	1	STRG.6032.1,blat.proc3825166.chain_2257	2
scaffold_1	alt_donor	13926172	13926173	-	asmbl_862	none	STRG.1000.1	1	STRG.1000.2,STRG.1000.3,blat.proc3825148.chain_1010	3
scaffold_6	ends_in_intron	14723612	14723612	+	asmbl_47638	none	STRG.8238.1,blat.proc3825168.chain_682	2	blat.proc3825168.chain_683	1
scaffold_20	alt_donor	10384363	10384364	+	asmbl_26954,asmbl_26959,asmbl_26960,asmbl_26961	none	STRG.23583.1,STRG.23583.2,STRG.23583.3,STRG.23583.4,Trinity_GG_30302_c0_g1_i1,blat.proc3825176.chain_670	6	Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_671	2
scaffold_12	spliced_intron	2965837	2965925	-	asmbl_8337	none	STRG.14532.1,blat.proc3825154.chain_3014	2	Trinity_GG_8098_c0_g1_i2,blat.proc3825154.chain_3015	2
scaffold_15	alt_acceptor	12392270	12392271	-	asmbl_14575,asmbl_14576	none	STRG.18695.2,STRG.18695.4	2	STRG.18695.3,blat.proc3825156.chain_3518	2
scaffold_6	skipped_exon	16887339	16888617	-	asmbl_49175	none	STRG.8411.1,Trinity_GG_4777_c0_g1_i4,blat.proc3825152.chain_820	3	STRG.8411.2,Trinity_GG_4777_c0_g1_i2,blat.proc3825152.chain_819	3
scaffold_5	spliced_intron	5061929	5062040	+	asmbl_45340,asmbl_45342	none	STRG.5963.2,STRG.5963.3,blat.proc3825166.chain_2192	3	STRG.5963.1,STRG.5963.4,Trinity_GG_20579_c0_g1_i2,Trinity_GG_20579_c0_g1_i3,blat.proc3825166.chain_2190,blat.proc3825166.chain_2191	6
scaffold_20	alternate_exon	11929379	11933128	+	asmbl_27104,asmbl_27105,asmbl_27106	none	STRG.23696.1,STRG.23696.3,blat.proc3825176.chain_836,blat.proc3825176.chain_837,blat.proc3825176.chain_838	5	STRG.23696.2	1
scaffold_8	retained_exon	10027347	10027730	-	asmbl_52088,asmbl_52090	none	STRG.10258.1,STRG.10258.2,blat.proc3825152.chain_2533	3	STRG.10258.3	1
scaffold_27	retained_exon	9333891	9333995	-	asmbl_37131	none	STRG.29184.2	1	STRG.29184.1,blat.proc3825162.chain_2361,blat.proc3825162.chain_2363	3
scaffold_1	starts_in_intron	8761614	8761614	-	asmbl_497	none	blat.proc3825148.chain_558	1	STRG.580.1,STRG.580.2,blat.proc3825148.chain_557	3
scaffold_6	starts_in_intron	13276817	13276817	+	asmbl_47518,asmbl_47519	none	blat.proc3825168.chain_519,blat.proc3825168.chain_520	2	STRG.8090.2,STRG.8090.3,STRG.8090.4,blat.proc3825168.chain_518	4
scaffold_1	ends_in_intron	1237449	1237449	+	asmbl_1465	none	blat.proc3825164.chain_182	1	STRG.66.1,blat.proc3825164.chain_183	2
scaffold_14	skipped_exon	8502055	8502712	-	asmbl_13326	none	STRG.17292.3	1	STRG.17292.2	1
scaffold_12	retained_intron	12018186	12018385	+	asmbl_7972	none	blat.proc3825170.chain_3544	1	STRG.15117.1,STRG.15117.2,Trinity_GG_25593_c0_g1_i3,Trinity_GG_25593_c0_g1_i4,Trinity_GG_25593_c0_g1_i5,blat.proc3825170.chain_3541,blat.proc3825170.chain_3542,blat.proc3825170.chain_3543	8
scaffold_16	starts_in_intron	14606956	14606956	-	asmbl_17473	none	STRG.19858.1,blat.proc3825158.chain_916	2	STRG.19858.3	1
scaffold_20	starts_in_intron	9500032	9500032	+	asmbl_26856	none	blat.proc3825176.chain_635	1	STRG.23489.2,blat.proc3825176.chain_636	2
scaffold_13	skipped_exon	366181	366931	-	asmbl_9317	none	STRG.15442.3	1	STRG.15442.1,STRG.15442.4,Trinity_GG_8663_c0_g1_i6,blat.proc3825156.chain_295	4
scaffold_15	alternate_exon	12030213	12030368	+	asmbl_15515	none	STRG.18644.3,Trinity_GG_27537_c0_g1_i4,blat.proc3825172.chain_3277	3	STRG.18644.2,Trinity_GG_27537_c0_g1_i2,blat.proc3825172.chain_3276	3
scaffold_19	retained_exon	11780130	11780300	+	asmbl_21721	none	blat.proc3825174.chain_3539	1	STRG.22505.1,blat.proc3825174.chain_3538	2
scaffold_1	alt_donor	11728132	11728133	+	asmbl_2139	none	STRG.788.1,Trinity_GG_17809_c0_g1_i1,blat.proc3825164.chain_964	3	STRG.788.2,Trinity_GG_17809_c0_g1_i2,blat.proc3825164.chain_963	3
scaffold_3	starts_in_intron	13425281	13425281	-	asmbl_39261	none	blat.proc3825148.chain_3591	1	STRG.3693.4	1
scaffold_3	alternate_exon	799142	799169	-	asmbl_38678	none	STRG.2908.3	1	STRG.2908.1,STRG.2908.2,STRG.2908.4,blat.proc3825148.chain_2794,blat.proc3825148.chain_2795	5
scaffold_4	alt_donor	7245524	7245525	+	asmbl_41475	none	STRG.4556.2,blat.proc3825166.chain_1018	2	STRG.4556.1,Trinity_GG_19847_c0_g1_i1,blat.proc3825166.chain_1019	3
scaffold_21	retained_intron	5536672	5536770	-	asmbl_27672,asmbl_27673	none	STRG.24086.2,Trinity_GG_13445_c0_g1_i9,blat.proc3825160.chain_1274,blat.proc3825160.chain_1277	4	STRG.24086.1,blat.proc3825160.chain_1271,blat.proc3825160.chain_1275	3
scaffold_9	retained_intron	12112505	12113296	+	asmbl_54410	none	blat.proc3825170.chain_367	1	STRG.11537.1,blat.proc3825170.chain_366	2
scaffold_22	starts_in_intron	4774097	4774097	+	asmbl_30038	none	Trinity_GG_31069_c0_g1_i1,blat.proc3825176.chain_1998	2	STRG.24893.1,Trinity_GG_31069_c0_g1_i2,blat.proc3825176.chain_1997	3
scaffold_17	skipped_exon	2740165	2740935	-	asmbl_17779	none	STRG.20077.2,blat.proc3825158.chain_1131	2	STRG.20077.1,blat.proc3825158.chain_1133	2
scaffold_13	ends_in_intron	11371990	11371990	+	asmbl_11267	none	blat.proc3825172.chain_965	1	STRG.16298.1,blat.proc3825172.chain_966	2
scaffold_21	spliced_intron	6129614	6129688	+	asmbl_28617,asmbl_28619	none	STRG.24150.1,Trinity_GG_30687_c0_g1_i2,blat.proc3825176.chain_1342,blat.proc3825176.chain_1343	4	STRG.24150.2,blat.proc3825176.chain_1341	2
scaffold_6	retained_intron	12999743	13000120	-	asmbl_48863,asmbl_48866,asmbl_48867,asmbl_48868	none	STRG.8068.5,STRG.8068.6,blat.proc3825152.chain_491,blat.proc3825152.chain_493	4	blat.proc3825152.chain_496	1
scaffold_20	alt_acceptor	11099024	11099025	+	asmbl_27009	none	STRG.23628.2,blat.proc3825176.chain_813	2	STRG.23628.1,blat.proc3825176.chain_814	2
scaffold_9	spliced_intron	16558842	16561320	-	asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55590,asmbl_55591	none	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7	STRG.11806.3,STRG.11806.6,Trinity_GG_6524_c0_g2_i1,Trinity_GG_6524_c0_g2_i2,Trinity_GG_6524_c2_g1_i1,blat.proc3825154.chain_275,blat.proc3825154.chain_276,blat.proc3825154.chain_278	8
scaffold_15	starts_in_intron	3397116	3397116	-	asmbl_14096	none	blat.proc3825156.chain_2974	1	STRG.18121.1,blat.proc3825156.chain_2975,blat.proc3825156.chain_2976	3
scaffold_25	retained_exon	2690332	2690449	+	asmbl_33403	none	STRG.27234.1	1	STRG.27234.2,blat.proc3825178.chain_309	2
scaffold_5	alt_donor	6278339	6278340	-	asmbl_44087	none	STRG.6037.2	1	STRG.6037.1,blat.proc3825150.chain_2242,blat.proc3825150.chain_2244	3
scaffold_4	alt_donor	16706027	16706028	-	asmbl_43206	none	STRG.5251.3,blat.proc3825150.chain_1355	2	STRG.5251.1,STRG.5251.2,blat.proc3825150.chain_1356,blat.proc3825150.chain_1357	4
scaffold_28	skipped_exon	5014513	5014754	+	asmbl_37559	none	Trinity_GG_33747_c0_g1_i3,blat.proc3825178.chain_2831	2	STRG.29651.1,STRG.29651.2,Trinity_GG_33747_c0_g1_i4,blat.proc3825178.chain_2828	4
scaffold_57	starts_in_intron	11307	11307	-	asmbl_46589	none	blat.proc3825162.chain_3249	1	STRG.30080.1,blat.proc3825162.chain_3248	2
scaffold_11	alt_acceptor	9151127	9151128	+	asmbl_5873,asmbl_5874	none	STRG.13954.1,STRG.13954.2,blat.proc3825170.chain_2540,blat.proc3825170.chain_2541,blat.proc3825170.chain_2542	5	STRG.13954.3	1
scaffold_5	spliced_intron	8413453	8413714	+	asmbl_45549	none	STRG.6187.3,blat.proc3825166.chain_2306	2	STRG.6187.1,blat.proc3825166.chain_2304,blat.proc3825166.chain_2305	3
scaffold_21	retained_intron	2470395	2470715	-	asmbl_27456,asmbl_27461	none	STRG.23874.2,blat.proc3825160.chain_1045,blat.proc3825160.chain_1048	3	STRG.23874.1,blat.proc3825160.chain_1043,blat.proc3825160.chain_1044	3
scaffold_1	ends_in_intron	20348433	20348433	+	asmbl_2617,asmbl_2618,asmbl_2621	none	STRG.1396.2,STRG.1396.3,STRG.1396.5,Trinity_GG_18153_c0_g1_i4,blat.proc3825164.chain_1586	5	STRG.1396.1,blat.proc3825164.chain_1584	2
scaffold_9	starts_in_intron	9812181	9812181	+	asmbl_54259	none	blat.proc3825170.chain_124	1	blat.proc3825170.chain_122	1
scaffold_10	alt_donor	17700902	17700903	+	asmbl_3796	none	blat.proc3825154.chain_1792	1	blat.proc3825154.chain_1793	1
scaffold_14	alt_donor	583521	583522	+	asmbl_11771	none	STRG.16740.2	1	STRG.16740.3,Trinity_GG_26527_c0_g1_i1,blat.proc3825172.chain_1519	3
scaffold_18	ends_in_intron	11459388	11459388	-	asmbl_20134	none	blat.proc3825158.chain_2545	1	STRG.21677.1,blat.proc3825158.chain_2546	2
scaffold_3	spliced_intron	12465871	12466558	-	asmbl_39214	none	STRG.3642.2,Trinity_GG_1964_c0_g1_i1,blat.proc3825148.chain_3479	3	STRG.3642.1,blat.proc3825148.chain_3478	2
scaffold_16	retained_intron	6149425	6149506	+	asmbl_16280	none	blat.proc3825174.chain_144	1	STRG.19354.1,blat.proc3825174.chain_141	2
scaffold_18	alt_donor	1327623	1327624	+	asmbl_20337,asmbl_20340	none	STRG.21023.2,blat.proc3825174.chain_1860	2	STRG.21023.1,STRG.21023.3,blat.proc3825174.chain_1861,blat.proc3825174.chain_1862	4
scaffold_1	alt_donor	13930118	13930119	-	asmbl_864	none	STRG.1001.2	1	STRG.1001.1	1
scaffold_6	retained_intron	17522323	17523320	+	asmbl_47761	none	STRG.8455.2,Trinity_GG_21946_c1_g1_i1,Trinity_GG_21946_c1_g1_i4,blat.proc3825168.chain_893,blat.proc3825168.chain_894	5	STRG.8455.1,STRG.8455.4,blat.proc3825168.chain_892	3
scaffold_2	alt_donor	2010732	2010733	+	asmbl_24225	none	STRG.1654.2	1	STRG.1654.1	1
scaffold_3	starts_in_intron	1257943	1257943	+	asmbl_39839	none	Trinity_GG_18945_c0_g1_i1,blat.proc3825164.chain_3130	2	STRG.2952.1	1
scaffold_1	alternate_exon	15887021	15887102	-	asmbl_964	none	STRG.1118.3	1	STRG.1118.1,STRG.1118.2,blat.proc3825148.chain_1135,blat.proc3825148.chain_1136	4
scaffold_7	spliced_intron	9312119	9312215	+	asmbl_50074,asmbl_50075,asmbl_50076	none	STRG.9144.1,Trinity_GG_22395_c0_g1_i2,Trinity_GG_22395_c0_g1_i3,Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669,blat.proc3825168.chain_1670,blat.proc3825168.chain_1671	7	Trinity_GG_22395_c0_g1_i1,blat.proc3825168.chain_1672	2
scaffold_5	alternate_exon	15041662	15041874	-	asmbl_44638,asmbl_44639	none	STRG.6698.2,STRG.6698.3,blat.proc3825150.chain_2828,blat.proc3825150.chain_2829	4	STRG.6698.6,blat.proc3825150.chain_2831	2
scaffold_22	retained_exon	323133	323189	+	asmbl_29839,asmbl_29842	none	STRG.24686.3,blat.proc3825176.chain_1816	2	STRG.24686.1,blat.proc3825176.chain_1815,blat.proc3825176.chain_1819	3
scaffold_11	alternate_exon	8898837	8898983	-	asmbl_6884	none	STRG.13911.1	1	blat.proc3825154.chain_2427	1
scaffold_1	retained_intron	922856	922976	+	asmbl_1443	none	Trinity_GG_17320_c0_g1_i5,blat.proc3825164.chain_82	2	STRG.49.4,blat.proc3825164.chain_87	2
scaffold_6	alternate_exon	8933800	8934068	+	asmbl_47182,asmbl_47184	none	STRG.7773.2,STRG.7773.3,blat.proc3825168.chain_203	3	STRG.7773.1,blat.proc3825168.chain_202	2
scaffold_6	skipped_exon	11482302	11482900	+	asmbl_47326,asmbl_47331	none	STRG.7943.1,blat.proc3825168.chain_312,blat.proc3825168.chain_314	3	STRG.7943.4	1
scaffold_28	spliced_intron	5755662	5756003	+	asmbl_37602	none	STRG.29716.2,Trinity_GG_33774_c0_g1_i2,blat.proc3825178.chain_2882	3	Trinity_GG_33774_c0_g2_i1,blat.proc3825178.chain_2883	2
scaffold_27	retained_intron	2047111	2047352	+	asmbl_36063	none	blat.proc3825178.chain_1811	1	STRG.28688.1,blat.proc3825178.chain_1809	2
scaffold_8	spliced_intron	4859932	4860106	-	asmbl_51812	none	STRG.9948.1,Trinity_GG_5566_c0_g1_i2,blat.proc3825152.chain_2240	3	blat.proc3825152.chain_2241	1
scaffold_500	retained_intron	2522	2857	+	asmbl_46488,asmbl_46489,asmbl_46493	none	STRG.30357.1,STRG.30357.4,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445,blat.proc3825178.chain_3446	5	STRG.30357.6	1
scaffold_8	alt_donor	11263866	11263867	-	asmbl_52138	none	STRG.10336.2,blat.proc3825152.chain_2566	2	STRG.10336.1	1
scaffold_11	retained_intron	147614	147643	-	asmbl_6375	none	STRG.13243.2	1	blat.proc3825154.chain_1832	1
scaffold_3	alt_acceptor	13838290	13838291	+	asmbl_40462	none	Trinity_GG_19394_c0_g1_i3,blat.proc3825166.chain_207	2	STRG.3730.1,Trinity_GG_19394_c0_g1_i1,Trinity_GG_19394_c0_g1_i4,Trinity_GG_19394_c0_g1_i6,blat.proc3825166.chain_206,blat.proc3825166.chain_208,blat.proc3825166.chain_209,blat.proc3825166.chain_210	8
scaffold_2	retained_exon	13052791	13052906	+	asmbl_24809	none	STRG.2330.2,blat.proc3825164.chain_2481	2	STRG.2330.3,blat.proc3825164.chain_2480	2
scaffold_7	starts_in_intron	15269415	15269415	+	asmbl_50425	none	STRG.9546.4,Trinity_GG_22636_c1_g1_i1,blat.proc3825168.chain_2127	3	STRG.9546.1,STRG.9546.2,STRG.9546.3,blat.proc3825168.chain_2120,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2125	7
scaffold_28	skipped_exon	1431687	1434129	-	asmbl_37989,asmbl_37991	none	STRG.29342.1,STRG.29342.3,blat.proc3825162.chain_2528	3	STRG.29342.2,blat.proc3825162.chain_2527	2
scaffold_2	alternate_exon	4555860	4556007	-	asmbl_23084	none	STRG.1881.2	1	STRG.1881.1,Trinity_GG_1045_c0_g1_i1,blat.proc3825148.chain_1853	3
scaffold_14	starts_in_intron	6292386	6292386	+	asmbl_12067	none	Trinity_GG_26712_c0_g1_i4,blat.proc3825172.chain_1847	2	STRG.17083.1,Trinity_GG_26712_c0_g1_i1,blat.proc3825172.chain_1843,blat.proc3825172.chain_1844,blat.proc3825172.chain_1846	5
scaffold_2	alt_donor	17971546	17971547	+	asmbl_25208,asmbl_25209,asmbl_25210,asmbl_25211	none	STRG.2689.1,blat.proc3825164.chain_2961,blat.proc3825164.chain_2962,blat.proc3825164.chain_2963,blat.proc3825164.chain_2964	5	STRG.2689.2	1
scaffold_23	starts_in_intron	10826399	10826399	-	asmbl_31163	none	blat.proc3825160.chain_3406	1	STRG.26273.1,STRG.26273.2,blat.proc3825160.chain_3407	3
scaffold_2	alternate_exon	2909147	2909189	-	asmbl_22947,asmbl_22948	none	blat.proc3825148.chain_1611,blat.proc3825148.chain_1613	2	STRG.1731.1,STRG.1731.2,blat.proc3825148.chain_1612,blat.proc3825148.chain_1614,blat.proc3825148.chain_1615	5
scaffold_19	starts_in_intron	2654174	2654174	-	asmbl_22060	none	blat.proc3825158.chain_2788	1	STRG.21953.1,blat.proc3825158.chain_2789	2
scaffold_7	alternate_exon	15314720	15314875	-	asmbl_51369	none	STRG.9548.1,Trinity_GG_5358_c0_g2_i1,blat.proc3825152.chain_1894	3	STRG.9548.2,STRG.9548.3,blat.proc3825152.chain_1895	3
scaffold_5	retained_intron	14261932	14262394	+	asmbl_45913,asmbl_45920,asmbl_45922	none	STRG.6638.3,Trinity_GG_20907_c0_g1_i8,blat.proc3825166.chain_2783,blat.proc3825166.chain_2787	4	STRG.6638.4,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	3
scaffold_10	starts_in_intron	11877855	11877855	-	asmbl_4796	none	blat.proc3825154.chain_1413	1	STRG.12826.1,STRG.12826.2,blat.proc3825154.chain_1412	3
scaffold_1	spliced_intron	9329051	9329388	+	asmbl_1985,asmbl_1986	none	STRG.634.1,STRG.634.2	2	STRG.634.3	1
scaffold_6	alt_acceptor	12412179	12412180	-	asmbl_48803,asmbl_48804	none	STRG.7996.1,STRG.7996.3,blat.proc3825152.chain_394	3	STRG.7996.2,STRG.7996.4,blat.proc3825152.chain_392,blat.proc3825152.chain_393	4
scaffold_7	retained_intron	18392945	18393030	-	asmbl_51478	none	Trinity_GG_5439_c0_g1_i9,blat.proc3825152.chain_2019	2	STRG.9670.1,STRG.9670.2,Trinity_GG_5439_c0_g1_i1,blat.proc3825152.chain_2012,blat.proc3825152.chain_2016	5
scaffold_4	starts_in_intron	19045643	19045643	-	asmbl_43406	none	Trinity_GG_3089_c0_g1_i1,blat.proc3825150.chain_1693	2	STRG.5489.1,Trinity_GG_3089_c0_g1_i2,blat.proc3825150.chain_1692	3
scaffold_11	spliced_intron	5501775	5502119	-	asmbl_6665	none	STRG.13620.1,blat.proc3825154.chain_2128	2	STRG.13620.2,blat.proc3825154.chain_2127,blat.proc3825154.chain_2129	3
scaffold_1	starts_in_intron	19034267	19034267	+	asmbl_2577	none	blat.proc3825164.chain_1474	1	STRG.1327.2,blat.proc3825164.chain_1475	2
scaffold_3	starts_in_intron	16945111	16945111	-	asmbl_39523	none	blat.proc3825150.chain_60	1	STRG.3938.1	1
scaffold_12	starts_in_intron	3334411	3334411	-	asmbl_8355	none	blat.proc3825154.chain_3040	1	STRG.14564.1,blat.proc3825154.chain_3039	2
scaffold_8	alternate_exon	21890	22550	-	asmbl_51682	none	STRG.9705.1,blat.proc3825152.chain_2050	2	STRG.9705.2	1
scaffold_10	alt_acceptor	5007104	5007105	-	asmbl_4329	none	STRG.12325.2,Trinity_GG_6889_c0_g1_i1,blat.proc3825154.chain_894	3	STRG.12325.1,blat.proc3825154.chain_893	2
scaffold_10	alt_donor	4715968	4715969	-	asmbl_4309	none	STRG.12295.2	1	STRG.12295.1,blat.proc3825154.chain_858	2
scaffold_12	skipped_exon	15678894	15680570	-	asmbl_9093	none	STRG.15358.4,blat.proc3825156.chain_213	2	STRG.15358.1,STRG.15358.2,STRG.15358.3,blat.proc3825156.chain_212	4
scaffold_26	spliced_intron	10097149	10097600	-	asmbl_35807	none	STRG.28531.1,blat.proc3825162.chain_1717	2	Trinity_GG_15947_c0_g1_i3,blat.proc3825162.chain_1716,blat.proc3825162.chain_1718	3
scaffold_23	retained_intron	6290835	6290991	-	asmbl_30967,asmbl_30969,asmbl_30970	none	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190	7	STRG.25975.3,Trinity_GG_14564_c0_g1_i5,blat.proc3825160.chain_3193	3
scaffold_6	spliced_intron	6755355	6755511	-	asmbl_48465	none	blat.proc3825150.chain_3696	1	STRG.7586.1	1
scaffold_7	alt_acceptor	1235756	1235757	+	asmbl_49592,asmbl_49593,asmbl_49603	none	STRG.8637.4,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072	3	STRG.8637.1,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i4,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1074,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	12
scaffold_6	retained_intron	5752193	5752361	+	asmbl_46975,asmbl_46976	none	blat.proc3825166.chain_3735,blat.proc3825166.chain_3736	2	STRG.7534.1,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734	3
scaffold_4	retained_exon	4414044	4414070	+	asmbl_41255	none	STRG.4349.1,blat.proc3825166.chain_851	2	STRG.4349.3,blat.proc3825166.chain_843	2
scaffold_16	alt_donor	10448144	10448145	+	asmbl_16538	none	STRG.19614.4	1	STRG.19614.2,blat.proc3825174.chain_484	2
scaffold_1	alternate_exon	6310459	6310603	+	asmbl_1825	none	STRG.428.1,blat.proc3825164.chain_538	2	STRG.428.2	1
scaffold_7	starts_in_intron	16826479	16826479	-	asmbl_51419	none	blat.proc3825152.chain_1951	1	STRG.9597.1,blat.proc3825152.chain_1952	2
scaffold_8	alt_acceptor	6904348	6904349	+	asmbl_52973	none	STRG.10051.3	1	STRG.10051.1,STRG.10051.2,blat.proc3825168.chain_2537	3
scaffold_23	ends_in_intron	1430747	1430747	-	asmbl_30648	none	STRG.25616.2,Trinity_GG_14306_c1_g1_i1,blat.proc3825160.chain_2741	3	STRG.25616.1	1
scaffold_8	spliced_intron	10240030	10240454	+	asmbl_53161,asmbl_53162,asmbl_53163,asmbl_53164,asmbl_53167	none	STRG.10282.1,STRG.10282.2,STRG.10282.3,Trinity_GG_22967_c0_g1_i4,blat.proc3825168.chain_2729,blat.proc3825168.chain_2730,blat.proc3825168.chain_2731,blat.proc3825168.chain_2732,blat.proc3825168.chain_2733	9	Trinity_GG_22967_c1_g1_i1,blat.proc3825168.chain_2735	2
scaffold_10	starts_in_intron	3351957	3351957	-	asmbl_4196	none	blat.proc3825154.chain_688	1	STRG.12167.1,blat.proc3825154.chain_689	2
scaffold_13	ends_in_intron	4296916	4296916	+	asmbl_10776	none	blat.proc3825172.chain_494	1	STRG.15753.1	1
scaffold_11	alt_donor	2203533	2203534	-	asmbl_6483,asmbl_6484,asmbl_6485	none	STRG.13383.1,STRG.13383.2,STRG.13383.4	3	STRG.13383.3	1
scaffold_11	spliced_intron	13593204	13593300	-	asmbl_7148	none	blat.proc3825154.chain_2763	1	STRG.14216.1,Trinity_GG_7952_c0_g1_i2,blat.proc3825154.chain_2764,blat.proc3825154.chain_2765	4
scaffold_20	skipped_exon	10384363	10384687	+	asmbl_26959	none	STRG.23583.3	1	STRG.23583.4	1
scaffold_17	alt_acceptor	3295291	3295292	+	asmbl_18715	none	STRG.20112.1,Trinity_GG_28327_c0_g1_i1,blat.proc3825174.chain_984	3	STRG.20112.2	1
scaffold_5	starts_in_intron	1250420	1250420	-	asmbl_43847	none	blat.proc3825150.chain_1932	1	STRG.5688.1,blat.proc3825150.chain_1929,blat.proc3825150.chain_1933	3
scaffold_11	alt_acceptor	15631295	15631296	+	asmbl_6119	none	STRG.14299.2	1	STRG.14299.1,blat.proc3825170.chain_2833,blat.proc3825170.chain_2834,blat.proc3825170.chain_2835	4
scaffold_1	retained_intron	18485288	18485976	-	asmbl_1113,asmbl_1114	none	STRG.1298.1,STRG.1298.3	2	blat.proc3825148.chain_1321	1
scaffold_2	starts_in_intron	18409650	18409650	-	asmbl_23780	none	STRG.2732.2	1	STRG.2732.1,blat.proc3825148.chain_2669	2
scaffold_24	alternate_exon	163121	163275	-	asmbl_32699	none	STRG.26320.2,Trinity_GG_14715_c0_g1_i3,blat.proc3825160.chain_3447	3	STRG.26320.1	1
scaffold_17	alt_donor	1123911	1123912	+	asmbl_18590,asmbl_18593,asmbl_18594	none	STRG.19963.1,STRG.19963.3,STRG.19963.4,blat.proc3825174.chain_835,blat.proc3825174.chain_837,blat.proc3825174.chain_838	6	STRG.19963.2	1
scaffold_13	alternate_exon	3707222	3707517	-	asmbl_9564,asmbl_9565	none	STRG.15688.3,STRG.15688.4	2	STRG.15688.1	1
scaffold_19	alt_acceptor	729017	729018	+	asmbl_21203,asmbl_21205,asmbl_21206	none	STRG.21857.1,STRG.21857.2,STRG.21857.3,blat.proc3825174.chain_2906	4	STRG.21857.4	1
scaffold_11	spliced_intron	175992	176272	+	asmbl_5264,asmbl_5266	none	Trinity_GG_24602_c0_g1_i3,blat.proc3825170.chain_1810,blat.proc3825170.chain_1812	3	blat.proc3825170.chain_1809,blat.proc3825170.chain_1811	2
scaffold_13	starts_in_intron	7109163	7109163	+	asmbl_11014	none	Trinity_GG_26113_c0_g1_i9	1	STRG.16010.1,STRG.16010.2,STRG.16010.3,Trinity_GG_26113_c0_g1_i10,blat.proc3825172.chain_778	5
scaffold_1	starts_in_intron	43930	43930	-	asmbl_1	none	STRG.11.2,Trinity_GG_34_c2_g1_i1,blat.proc3825148.chain_67	3	STRG.11.1,STRG.11.3,blat.proc3825148.chain_63,blat.proc3825148.chain_64	4
scaffold_23	retained_intron	10977777	10977923	+	asmbl_31899,asmbl_31903,asmbl_31906	none	STRG.26307.4,Trinity_GG_31796_c0_g1_i6,blat.proc3825176.chain_3179,blat.proc3825176.chain_3182	4	STRG.26307.1,STRG.26307.2,blat.proc3825176.chain_3177,blat.proc3825176.chain_3178,blat.proc3825176.chain_3181,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	7
scaffold_5	alternate_exon	5737143	5738209	+	asmbl_45364,asmbl_45366	none	STRG.5992.5,blat.proc3825166.chain_2135	2	STRG.5992.7,Trinity_GG_20545_c0_g1_i4,blat.proc3825166.chain_2132	3
scaffold_4	alt_donor	10129493	10129494	-	asmbl_42838	none	blat.proc3825150.chain_975	1	STRG.4779.1,blat.proc3825150.chain_974	2
scaffold_14	spliced_intron	12753400	12753507	-	asmbl_13595,asmbl_13596,asmbl_13597,asmbl_13602,asmbl_13603	none	STRG.17591.1,STRG.17591.2,STRG.17591.3,blat.proc3825156.chain_2474,blat.proc3825156.chain_2476	5	blat.proc3825156.chain_2475	1
scaffold_26	alt_acceptor	9772903	9772904	+	asmbl_35261,asmbl_35267	none	STRG.28516.2,blat.proc3825178.chain_1638	2	STRG.28516.1,STRG.28516.7,blat.proc3825178.chain_1636	3
scaffold_2	starts_in_intron	10674382	10674382	+	asmbl_24716	none	blat.proc3825164.chain_2412	1	STRG.2231.1,blat.proc3825164.chain_2413	2
scaffold_21	spliced_intron	4967429	4967605	-	asmbl_27602	none	STRG.24040.1,blat.proc3825160.chain_1179	2	blat.proc3825160.chain_1180	1
scaffold_16	spliced_intron	2571074	2571165	+	asmbl_16131	none	STRG.19148.2	1	STRG.19148.1	1
scaffold_28	starts_in_intron	7156027	7156027	+	asmbl_37635	none	STRG.29775.3,blat.proc3825178.chain_2926	2	STRG.29775.1,STRG.29775.2,blat.proc3825178.chain_2925,blat.proc3825178.chain_2927,blat.proc3825178.chain_2928	5
scaffold_14	ends_in_intron	8400735	8400735	-	asmbl_13304	none	Trinity_GG_9689_c0_g1_i4,blat.proc3825156.chain_2085	2	STRG.17279.1,STRG.17279.3,blat.proc3825156.chain_2084	3
scaffold_10	retained_intron	5856417	5856955	-	asmbl_4393	none	Trinity_GG_6938_c0_g1_i1,blat.proc3825154.chain_981	2	STRG.12409.1,STRG.12409.2,STRG.12409.3,blat.proc3825154.chain_985	4
scaffold_21	starts_in_intron	3170261	3170261	+	asmbl_28461	none	blat.proc3825176.chain_1136	1	STRG.23959.1,STRG.23959.2,STRG.23959.3,STRG.23959.4,STRG.23959.5,STRG.23959.7,blat.proc3825176.chain_1132,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	13
scaffold_13	alternate_exon	2068270	2068385	+	asmbl_10578	none	STRG.15540.3,blat.proc3825172.chain_305	2	STRG.15540.1,STRG.15540.2,Trinity_GG_25866_c0_g1_i1,blat.proc3825172.chain_306	4
scaffold_27	alt_donor	2814303	2814304	+	asmbl_36118,asmbl_36119,asmbl_36122	none	STRG.28763.1,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1925	5	STRG.28763.2,STRG.28763.3,Trinity_GG_33230_c1_g1_i2,blat.proc3825178.chain_1927	4
scaffold_28	ends_in_intron	2427861	2427861	-	asmbl_38058	none	blat.proc3825162.chain_2553	1	STRG.29419.1,Trinity_GG_16464_c0_g1_i2,blat.proc3825162.chain_2552	3
scaffold_12	starts_in_intron	12016956	12016956	+	asmbl_7971,asmbl_7972	none	Trinity_GG_25593_c0_g1_i4,blat.proc3825170.chain_3541,blat.proc3825170.chain_3544	3	STRG.15117.1,STRG.15117.2,Trinity_GG_25593_c0_g1_i3,Trinity_GG_25593_c0_g1_i5,blat.proc3825170.chain_3542,blat.proc3825170.chain_3543	6
scaffold_7	spliced_intron	706941	707196	-	asmbl_50688,asmbl_50689,asmbl_50691	none	STRG.8607.2,STRG.8607.3,Trinity_GG_4922_c0_g1_i3,Trinity_GG_4922_c0_g1_i5,blat.proc3825152.chain_1071,blat.proc3825152.chain_1072,blat.proc3825152.chain_1073	7	blat.proc3825152.chain_1070	1
scaffold_4	alternate_exon	12437819	12438419	+	asmbl_41720	none	STRG.4883.1,blat.proc3825166.chain_1307	2	STRG.4883.2,blat.proc3825166.chain_1308	2
scaffold_8	retained_intron	7986965	7987830	-	asmbl_51941	none	Trinity_GG_5617_c0_g1_i2,Trinity_GG_5617_c1_g1_i1,blat.proc3825152.chain_2333,blat.proc3825152.chain_2338	4	STRG.10098.1,STRG.10098.2,Trinity_GG_5617_c0_g1_i4,blat.proc3825152.chain_2334,blat.proc3825152.chain_2335	5
scaffold_20	spliced_intron	7468719	7468963	-	asmbl_25905,asmbl_25908,asmbl_25910	none	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_462,blat.proc3825160.chain_466	4	blat.proc3825160.chain_461,blat.proc3825160.chain_465	2
scaffold_15	alternate_exon	11494900	11495342	-	asmbl_14519	none	STRG.18613.2	1	STRG.18613.1,blat.proc3825156.chain_3487,blat.proc3825156.chain_3489,blat.proc3825156.chain_3490	4
scaffold_3	retained_exon	13176884	13176898	+	asmbl_40433,asmbl_40434	none	blat.proc3825166.chain_165,blat.proc3825166.chain_166	2	STRG.3682.1	1
scaffold_21	spliced_intron	8920825	8921417	+	asmbl_28839	none	STRG.24410.1	1	STRG.24410.2,Trinity_GG_30826_c0_g1_i1,blat.proc3825176.chain_1591,blat.proc3825176.chain_1592	4
scaffold_1	ends_in_intron	11176337	11176337	+	asmbl_2086	none	blat.proc3825164.chain_909	1	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915	9
scaffold_14	retained_intron	3097650	3097893	+	asmbl_11901	none	blat.proc3825172.chain_1674	1	STRG.16902.1,blat.proc3825172.chain_1675	2
scaffold_16	alt_acceptor	1800986	1800987	-	asmbl_16954	none	STRG.19106.1,blat.proc3825158.chain_253	2	STRG.19106.2	1
scaffold_1	alt_donor	12585457	12585458	+	asmbl_2238	none	STRG.877.1	1	STRG.877.2	1
scaffold_26	retained_exon	5745760	5745849	+	asmbl_35031,asmbl_35034	none	STRG.28271.2,blat.proc3825178.chain_1356	2	STRG.28271.1,Trinity_GG_32933_c0_g1_i2,blat.proc3825178.chain_1357,blat.proc3825178.chain_1358	4
scaffold_28	retained_intron	8481657	8481677	+	asmbl_37753	none	STRG.29925.1,blat.proc3825178.chain_3030	2	STRG.29925.2	1
scaffold_14	alternate_exon	15345133	15345449	-	asmbl_13712	none	STRG.17765.3,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2610	3	blat.proc3825156.chain_2608	1
scaffold_4	retained_intron	13762275	13762795	-	asmbl_43006	none	blat.proc3825150.chain_1142	1	STRG.4997.1,STRG.4997.2,blat.proc3825150.chain_1141,blat.proc3825150.chain_1143,blat.proc3825150.chain_1144	5
scaffold_19	skipped_exon	12956159	12956739	-	asmbl_22567	none	Trinity_GG_12582_c0_g1_i2,blat.proc3825158.chain_3401	2	STRG.22612.1,Trinity_GG_12582_c0_g1_i4,Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3403,blat.proc3825158.chain_3404	7
scaffold_15	retained_intron	8039747	8042221	-	asmbl_14326	none	STRG.18380.2,blat.proc3825156.chain_3223,blat.proc3825156.chain_3225	3	STRG.18380.1,blat.proc3825156.chain_3224	2
scaffold_15	retained_intron	4131199	4131226	+	asmbl_15125	none	STRG.18160.2,blat.proc3825172.chain_2815	2	STRG.18160.3	1
scaffold_7	alt_acceptor	8175491	8175492	+	asmbl_49959,asmbl_49960	none	STRG.9049.1,STRG.9049.2,blat.proc3825168.chain_1534,blat.proc3825168.chain_1535	4	STRG.9049.3,Trinity_GG_22317_c0_g2_i2,blat.proc3825168.chain_1533	3
scaffold_11	retained_intron	11641641	11641750	+	asmbl_5986	none	blat.proc3825170.chain_2635	1	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2633,blat.proc3825170.chain_2634,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2639,blat.proc3825170.chain_2640	8
scaffold_19	spliced_intron	10791584	10791697	+	asmbl_21656	none	STRG.22420.2	1	STRG.22420.1,Trinity_GG_29691_c0_g1_i1,blat.proc3825174.chain_3401	3
scaffold_13	alt_acceptor	12244976	12244977	+	asmbl_11344	none	STRG.16354.3	1	STRG.16354.1,STRG.16354.2	2
scaffold_16	ends_in_intron	8026757	8026757	-	asmbl_17217	none	blat.proc3825158.chain_594	1	STRG.19442.1,STRG.19442.2,blat.proc3825158.chain_595	3
scaffold_4	ends_in_intron	19356960	19356960	-	asmbl_43434,asmbl_43441	none	Trinity_GG_3086_c0_g1_i3,blat.proc3825150.chain_1687,blat.proc3825150.chain_1688	3	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1681,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	7
scaffold_16	retained_intron	293907	294060	-	asmbl_16845	none	STRG.19020.2,blat.proc3825158.chain_139,blat.proc3825158.chain_140	3	STRG.19020.1,blat.proc3825158.chain_142	2
scaffold_4	alternate_exon	10856653	10856930	+	asmbl_41675	none	STRG.4807.3,blat.proc3825166.chain_1275	2	STRG.4807.1	1
scaffold_2	spliced_intron	15266383	15266717	+	asmbl_25005	none	blat.proc3825164.chain_2609	1	blat.proc3825164.chain_2607,blat.proc3825164.chain_2608	2
scaffold_8	starts_in_intron	16506374	16506374	-	asmbl_52405,asmbl_52416	none	STRG.10629.6,blat.proc3825152.chain_2934	2	STRG.10629.1,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	8
scaffold_16	retained_exon	14486585	14486677	+	asmbl_16681	none	STRG.19826.1	1	STRG.19826.2	1
scaffold_9	retained_intron	8399726	8399808	-	asmbl_55128	none	STRG.11262.2	1	STRG.11262.1,blat.proc3825152.chain_3490	2
scaffold_11	retained_exon	8331179	8331294	+	asmbl_5750	none	STRG.13849.1,Trinity_GG_24932_c0_g1_i1,blat.proc3825170.chain_2372	3	Trinity_GG_24932_c0_g1_i2,blat.proc3825170.chain_2371	2
scaffold_7	alt_acceptor	18360611	18360612	-	asmbl_51462	none	blat.proc3825152.chain_2024,blat.proc3825152.chain_2025	2	STRG.9667.1,STRG.9667.2	2
scaffold_2	starts_in_intron	6348949	6348949	-	asmbl_23195	none	Trinity_GG_1061_c0_g1_i3,blat.proc3825148.chain_1895	2	STRG.2001.1,STRG.2001.2,Trinity_GG_1061_c0_g1_i1,Trinity_GG_1061_c0_g1_i2,blat.proc3825148.chain_1893,blat.proc3825148.chain_1894	6
scaffold_2	alt_donor	16861233	16861234	+	asmbl_25146	none	STRG.2602.1,blat.proc3825164.chain_2898	2	STRG.2602.2,blat.proc3825164.chain_2902	2
scaffold_22	retained_intron	752536	752836	+	asmbl_29888	none	Trinity_GG_30996_c0_g1_i3,blat.proc3825176.chain_1878	2	STRG.24734.1,Trinity_GG_30996_c0_g1_i1,blat.proc3825176.chain_1879	3
scaffold_5	alternate_exon	5510465	5510506	+	asmbl_45347	none	blat.proc3825166.chain_2206	1	STRG.5977.3	1
scaffold_2	skipped_exon	7403251	7404746	-	asmbl_23254,asmbl_23256	none	STRG.2065.5,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1985	3	STRG.2065.1,STRG.2065.2,STRG.2065.3,STRG.2065.4,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i4,Trinity_GG_1101_c0_g1_i5,Trinity_GG_1101_c0_g1_i6,blat.proc3825148.chain_1981,blat.proc3825148.chain_1982,blat.proc3825148.chain_1983,blat.proc3825148.chain_1986	12
scaffold_1	retained_intron	6324338	6324422	+	asmbl_1828	none	blat.proc3825164.chain_577	1	STRG.430.1,blat.proc3825164.chain_576,blat.proc3825164.chain_578	3
scaffold_28	spliced_intron	6515478	6515563	-	asmbl_38350	none	blat.proc3825162.chain_2874	1	STRG.29749.1,STRG.29749.3	2
scaffold_3	alt_acceptor	17844122	17844123	+	asmbl_40707,asmbl_40708	none	STRG.4004.3,STRG.4004.4	2	STRG.4004.1,STRG.4004.2,blat.proc3825166.chain_495,blat.proc3825166.chain_496,blat.proc3825166.chain_497	5
scaffold_14	retained_exon	219872	220576	-	asmbl_12805	none	STRG.16718.2,blat.proc3825156.chain_1513	2	STRG.16718.1,STRG.16718.3,STRG.16718.4,blat.proc3825156.chain_1511,blat.proc3825156.chain_1512,blat.proc3825156.chain_1514	6
scaffold_18	starts_in_intron	155905	155905	+	asmbl_20264	none	Trinity_GG_28842_c0_g1_i2,blat.proc3825174.chain_1886	2	STRG.20970.1,Trinity_GG_28842_c0_g1_i1,blat.proc3825174.chain_1885	3
scaffold_15	alternate_exon	8042222	8044598	-	asmbl_14327	none	STRG.18380.1,blat.proc3825156.chain_3224	2	blat.proc3825156.chain_3226	1
scaffold_25	retained_exon	401316	401327	+	asmbl_33328	none	blat.proc3825178.chain_262	1	STRG.27085.1,blat.proc3825178.chain_261	2
scaffold_16	spliced_intron	744436	744656	-	asmbl_16896,asmbl_16898	none	STRG.19055.1,blat.proc3825158.chain_184,blat.proc3825158.chain_185	3	blat.proc3825158.chain_187,blat.proc3825158.chain_188	2
scaffold_1	ends_in_intron	6574871	6574871	-	asmbl_374	none	blat.proc3825148.chain_425	1	STRG.450.1,STRG.450.2,blat.proc3825148.chain_426,blat.proc3825148.chain_427	4
scaffold_1	retained_intron	16095601	16095726	-	asmbl_972	none	STRG.1129.1,Trinity_GG_582_c0_g1_i1,blat.proc3825148.chain_1117,blat.proc3825148.chain_1119	4	STRG.1129.4	1
scaffold_6	starts_in_intron	2925974	2925974	-	asmbl_48196	none	STRG.7297.3,blat.proc3825150.chain_3333	2	STRG.7297.1,STRG.7297.2,STRG.7297.4,blat.proc3825150.chain_3331,blat.proc3825150.chain_3332	5
scaffold_10	starts_in_intron	2769586	2769586	-	asmbl_4129	none	blat.proc3825154.chain_645	1	STRG.12097.1,blat.proc3825154.chain_644	2
scaffold_5	starts_in_intron	7318300	7318300	+	asmbl_45488	none	Trinity_GG_20663_c0_g1_i2,blat.proc3825166.chain_2349	2	STRG.6129.1,STRG.6129.2,Trinity_GG_20663_c0_g1_i1,blat.proc3825166.chain_2348	4
scaffold_3	retained_intron	15741539	15741648	-	asmbl_39438,asmbl_39439	none	STRG.3851.2,STRG.3851.3,blat.proc3825148.chain_3704	3	STRG.3851.1,blat.proc3825148.chain_3706,blat.proc3825148.chain_3707	3
scaffold_26	retained_exon	9843315	9843402	+	asmbl_35278,asmbl_35283,asmbl_35284,asmbl_35285,asmbl_35288,asmbl_35290	none	STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1575,blat.proc3825178.chain_1576,blat.proc3825178.chain_1578,blat.proc3825178.chain_1581	7	STRG.28546.1,blat.proc3825178.chain_1577,blat.proc3825178.chain_1579	3
scaffold_20	alternate_exon	9965476	9965583	-	asmbl_26065,asmbl_26067	none	STRG.23540.3,Trinity_GG_13133_c0_g1_i4,blat.proc3825160.chain_626	3	STRG.23540.2,STRG.23540.4,Trinity_GG_13133_c0_g1_i2,blat.proc3825160.chain_627	4
scaffold_3	spliced_intron	17094055	17094262	-	asmbl_39537	none	STRG.3949.2,blat.proc3825150.chain_131	2	STRG.3949.1,Trinity_GG_2181_c0_g1_i2,blat.proc3825150.chain_130	3
scaffold_15	alt_donor	7803904	7803905	-	asmbl_14310	none	STRG.18360.1,Trinity_GG_10324_c1_g1_i1,blat.proc3825156.chain_3204,blat.proc3825156.chain_3207	4	blat.proc3825156.chain_3205	1
scaffold_17	skipped_exon	5998506	6000825	+	asmbl_18837,asmbl_18838	none	STRG.20285.2,STRG.20285.5	2	STRG.20285.4,Trinity_GG_28430_c1_g1_i2,blat.proc3825174.chain_1139,blat.proc3825174.chain_1140	4
scaffold_24	ends_in_intron	2457198	2457198	+	asmbl_32099	none	Trinity_GG_31925_c0_g1_i2,blat.proc3825176.chain_3399	2	STRG.26471.1,blat.proc3825176.chain_3400	2
scaffold_5	alt_acceptor	7410119	7410120	-	asmbl_44176	none	STRG.6142.1	1	STRG.6142.2,STRG.6142.3	2
scaffold_14	alt_acceptor	1132372	1132373	-	asmbl_12861	none	STRG.16777.2,Trinity_GG_9403_c0_g1_i2,blat.proc3825156.chain_1608	3	STRG.16777.1,Trinity_GG_9403_c0_g1_i3,blat.proc3825156.chain_1610	3
scaffold_6	retained_intron	13268432	13268569	+	asmbl_47515	none	blat.proc3825168.chain_522	1	STRG.8090.1,STRG.8090.2,STRG.8090.3,blat.proc3825168.chain_521	4
scaffold_3	retained_intron	8245052	8245071	-	asmbl_39028	none	STRG.3403.2	1	STRG.3403.4	1
scaffold_8	alternate_exon	17302311	17314445	-	asmbl_52443,asmbl_52444	none	STRG.10653.1,STRG.10653.2,STRG.10653.4,blat.proc3825152.chain_2900,blat.proc3825152.chain_2902	5	blat.proc3825152.chain_2899	1
scaffold_7	alternate_exon	12259957	12260865	+	asmbl_50225	none	STRG.9322.1,Trinity_GG_22482_c0_g1_i3,blat.proc3825168.chain_1837	3	STRG.9322.2,Trinity_GG_22482_c0_g1_i4,blat.proc3825168.chain_1838	3
scaffold_21	spliced_intron	473831	473938	+	asmbl_28265,asmbl_28267	none	STRG.23742.1,Trinity_GG_30441_c0_g1_i2,blat.proc3825176.chain_915,blat.proc3825176.chain_917	4	blat.proc3825176.chain_916	1
scaffold_11	retained_intron	9832014	9832313	+	asmbl_5910,asmbl_5911,asmbl_5914	none	STRG.14008.5,Trinity_GG_25038_c0_g1_i2,blat.proc3825170.chain_2558,blat.proc3825170.chain_2559,blat.proc3825170.chain_2564	5	STRG.14008.1,STRG.14008.2,STRG.14008.3,blat.proc3825170.chain_2556,blat.proc3825170.chain_2557,blat.proc3825170.chain_2565	6
scaffold_21	retained_intron	1657024	1657137	+	asmbl_28349,asmbl_28352	none	Trinity_GG_30526_c0_g1_i11,blat.proc3825176.chain_1055,blat.proc3825176.chain_1061	3	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,Trinity_GG_30526_c0_g1_i4,Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058,blat.proc3825176.chain_1059,blat.proc3825176.chain_1060	9
scaffold_27	alt_acceptor	5660577	5660578	+	asmbl_36350	none	STRG.28973.1,blat.proc3825178.chain_2093,blat.proc3825178.chain_2095	3	STRG.28973.2,blat.proc3825178.chain_2094	2
scaffold_7	retained_exon	9836509	9836572	-	asmbl_51080,asmbl_51082	none	STRG.9181.2,STRG.9181.3,blat.proc3825152.chain_1508	3	STRG.9181.4,blat.proc3825152.chain_1507,blat.proc3825152.chain_1509	3
scaffold_11	spliced_intron	13092994	13093788	+	asmbl_6032	none	Trinity_GG_25144_c1_g1_i1,blat.proc3825170.chain_2752	2	Trinity_GG_25144_c1_g1_i2,blat.proc3825170.chain_2753	2
scaffold_2	retained_intron	10658018	10658230	-	asmbl_23438	none	blat.proc3825148.chain_2279	1	STRG.2229.1,blat.proc3825148.chain_2280	2
scaffold_1	alternate_exon	9652588	9652970	-	asmbl_553	none	STRG.652.1,blat.proc3825148.chain_640	2	STRG.652.2,blat.proc3825148.chain_639	2
scaffold_423	alt_acceptor	669	670	+	asmbl_43689	none	STRG.30324.1	1	STRG.30324.2	1
scaffold_10	alt_donor	9555608	9555609	+	asmbl_3397,asmbl_3399	none	STRG.12711.3,Trinity_GG_24296_c0_g1_i14,blat.proc3825170.chain_1284,blat.proc3825170.chain_1286	4	STRG.12711.1,STRG.12711.2,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1287	4
scaffold_12	spliced_intron	7669932	7670077	+	asmbl_7785,asmbl_7786	none	STRG.14853.1,Trinity_GG_25521_c0_g1_i3,Trinity_GG_25521_c0_g1_i4,blat.proc3825170.chain_3399,blat.proc3825170.chain_3400	5	STRG.14853.2,blat.proc3825170.chain_3398,blat.proc3825170.chain_3401	3
scaffold_20	retained_intron	9629566	9630290	+	asmbl_26869	none	STRG.23501.1,blat.proc3825176.chain_567	2	STRG.23501.2,STRG.23501.3	2
scaffold_4	alt_acceptor	3861733	3861734	+	asmbl_41204	none	STRG.4294.1,blat.proc3825166.chain_753	2	STRG.4294.2	1
scaffold_10	alt_acceptor	2678306	2678307	+	asmbl_2992	none	STRG.12083.1	1	STRG.12083.2,STRG.12083.3,STRG.12083.4,blat.proc3825170.chain_832	4
scaffold_8	alt_acceptor	14395606	14395607	-	asmbl_52306	none	STRG.10525.2,blat.proc3825152.chain_2659	2	STRG.10525.1,blat.proc3825152.chain_2661	2
scaffold_4	starts_in_intron	8411859	8411859	+	asmbl_41561	none	blat.proc3825166.chain_1086	1	STRG.4671.1,STRG.4671.2,Trinity_GG_19884_c0_g1_i3,blat.proc3825166.chain_1087	4
scaffold_5	starts_in_intron	17325276	17325276	+	asmbl_46168,asmbl_46171	none	Trinity_GG_21103_c0_g1_i6,blat.proc3825166.chain_3102,blat.proc3825166.chain_3104	3	Trinity_GG_21103_c0_g1_i2,Trinity_GG_21103_c0_g1_i9,blat.proc3825166.chain_3098,blat.proc3825166.chain_3099,blat.proc3825166.chain_3101	5
scaffold_5	spliced_intron	7708243	7708325	+	asmbl_45501	none	Trinity_GG_20669_c0_g1_i3,blat.proc3825166.chain_2366	2	STRG.6149.1,STRG.6149.2,blat.proc3825166.chain_2364,blat.proc3825166.chain_2365	4
scaffold_14	retained_intron	5790758	5790843	-	asmbl_13093	none	Trinity_GG_9519_c1_g1_i2,blat.proc3825156.chain_1794	2	STRG.17052.1,blat.proc3825156.chain_1796	2
scaffold_28	alt_donor	3732308	3732309	-	asmbl_38161,asmbl_38162,asmbl_38163,asmbl_38164,asmbl_38165,asmbl_38169,asmbl_38170	none	STRG.29587.1,STRG.29587.2,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2737,blat.proc3825162.chain_2738	8	STRG.29587.3,blat.proc3825162.chain_2733	2
scaffold_3	ends_in_intron	3323494	3323494	-	asmbl_38773	none	Trinity_GG_1667_c0_g1_i3,blat.proc3825148.chain_2948	2	STRG.3080.1,STRG.3080.2,blat.proc3825148.chain_2945,blat.proc3825148.chain_2946,blat.proc3825148.chain_2947	5
scaffold_5	skipped_exon	4687692	4689530	-	asmbl_43986	none	Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2077	2	blat.proc3825150.chain_2075,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084	3
scaffold_9	ends_in_intron	9846055	9846055	+	asmbl_54262	none	blat.proc3825170.chain_177	1	STRG.11355.1,blat.proc3825170.chain_178	2
scaffold_21	retained_intron	7914216	7914320	-	asmbl_27867	none	STRG.24325.2,blat.proc3825160.chain_1387	2	STRG.24325.4,blat.proc3825160.chain_1386	2
scaffold_10	ends_in_intron	5500520	5500520	+	asmbl_3177	none	blat.proc3825170.chain_986	1	blat.proc3825170.chain_985	1
scaffold_13	retained_intron	2636936	2637161	+	asmbl_10630	none	STRG.15562.2,Trinity_GG_25823_c0_g1_i2,blat.proc3825172.chain_214	3	STRG.15562.1,Trinity_GG_25823_c0_g1_i1,blat.proc3825172.chain_213	3
scaffold_8	alternate_exon	9291003	9291962	+	asmbl_53068	none	STRG.10191.1,blat.proc3825168.chain_2748	2	STRG.10191.2,blat.proc3825168.chain_2749	2
scaffold_15	starts_in_intron	8166306	8166306	+	asmbl_15323	none	blat.proc3825172.chain_2999	1	STRG.18391.1,STRG.18391.2,blat.proc3825172.chain_3002	3
scaffold_16	spliced_intron	10448144	10448354	+	asmbl_16538	none	STRG.19614.4	1	STRG.19614.1,STRG.19614.3,Trinity_GG_28027_c0_g1_i5,blat.proc3825174.chain_487	4
scaffold_16	alt_acceptor	6232191	6232192	-	asmbl_17154	none	STRG.19360.2	1	STRG.19360.1	1
scaffold_15	spliced_intron	400486	400509	+	asmbl_14975	none	STRG.17897.2	1	STRG.17897.1,Trinity_GG_27154_c1_g1_i1,blat.proc3825172.chain_2639	3
scaffold_10	alt_acceptor	3129058	3129059	-	asmbl_4167	none	STRG.12138.1,Trinity_GG_6767_c0_g1_i3,blat.proc3825154.chain_701	3	STRG.12138.3	1
scaffold_6	alt_donor	12888457	12888458	+	asmbl_47441	none	STRG.8047.2	1	STRG.8047.1,blat.proc3825168.chain_489	2
scaffold_21	starts_in_intron	5532738	5532738	-	asmbl_27669	none	blat.proc3825160.chain_1182	1	blat.proc3825160.chain_1184	1
scaffold_19	alternate_exon	11772123	11772170	+	asmbl_21718	none	STRG.22504.1,Trinity_GG_29756_c0_g1_i2,blat.proc3825174.chain_3515	3	STRG.22504.2,Trinity_GG_29756_c0_g1_i1,blat.proc3825174.chain_3516	3
scaffold_5	alternate_exon	16260236	16261289	+	asmbl_46069	none	STRG.6813.1,Trinity_GG_21022_c0_g1_i2,blat.proc3825166.chain_2973	3	STRG.6813.2,Trinity_GG_21022_c0_g1_i1,blat.proc3825166.chain_2972	3
scaffold_2	alt_acceptor	20423868	20423869	+	asmbl_25327	none	STRG.2881.1,blat.proc3825164.chain_3113	2	STRG.2881.2	1
scaffold_26	spliced_intron	1322177	1322196	-	asmbl_35398	none	STRG.27913.1	1	blat.proc3825162.chain_1237	1
scaffold_6	alt_acceptor	15112565	15112566	+	asmbl_47655,asmbl_47656	none	STRG.8277.1,STRG.8277.3,blat.proc3825168.chain_760	3	STRG.8277.2	1
scaffold_9	alt_acceptor	560221	560222	+	asmbl_53764	none	STRG.10785.1,blat.proc3825168.chain_3317	2	STRG.10785.2,blat.proc3825168.chain_3318	2
scaffold_9	starts_in_intron	3381694	3381694	-	asmbl_54895	none	STRG.10947.1,blat.proc3825152.chain_3199	2	STRG.10947.2,Trinity_GG_6072_c0_g1_i2	2
scaffold_2	alt_acceptor	3995535	3995536	+	asmbl_24325	none	STRG.1836.1,blat.proc3825164.chain_1987	2	STRG.1836.2,blat.proc3825164.chain_1988	2
scaffold_1	alternate_exon	922705	922855	+	asmbl_1444	none	STRG.49.4,blat.proc3825164.chain_87	2	STRG.49.1,STRG.49.2,STRG.49.3,Trinity_GG_17320_c0_g1_i4,Trinity_GG_17320_c0_g1_i6,Trinity_GG_17320_c0_g1_i7,blat.proc3825164.chain_83,blat.proc3825164.chain_84,blat.proc3825164.chain_85	9
scaffold_13	alternate_exon	15510175	15512242	+	asmbl_11512	none	STRG.16593.1,Trinity_GG_26459_c0_g1_i1,blat.proc3825172.chain_1398,blat.proc3825172.chain_1400	4	STRG.16593.3	1
scaffold_22	alternate_exon	7776827	7776873	+	asmbl_30217	none	STRG.25117.2,blat.proc3825176.chain_2247	2	STRG.25117.1	1
scaffold_1	skipped_exon	20134694	20135265	-	asmbl_1175	none	blat.proc3825148.chain_1398	1	STRG.1386.1,STRG.1386.2,STRG.1386.5	3
scaffold_9	spliced_intron	12012157	12012204	+	asmbl_54406	none	STRG.11527.1	1	Trinity_GG_23759_c0_g1_i1,blat.proc3825170.chain_357	2
scaffold_1	spliced_intron	7290185	7290421	+	asmbl_1897	none	STRG.520.1,Trinity_GG_17630_c0_g1_i5,blat.proc3825164.chain_639	3	STRG.520.3,Trinity_GG_17630_c0_g1_i1,Trinity_GG_17630_c0_g1_i2,blat.proc3825164.chain_641,blat.proc3825164.chain_642	5
scaffold_25	starts_in_intron	4539713	4539713	+	asmbl_33511	none	Trinity_GG_32413_c0_g1_i5,blat.proc3825178.chain_494	2	STRG.27392.1,blat.proc3825178.chain_495	2
scaffold_1	retained_intron	1565206	1565368	+	asmbl_1493	none	STRG.101.3	1	STRG.101.1,STRG.101.2,blat.proc3825164.chain_211,blat.proc3825164.chain_212	4
scaffold_28	retained_exon	2811310	2811348	-	asmbl_38088,asmbl_38092	none	STRG.29471.3,blat.proc3825162.chain_2598	2	STRG.29471.1,blat.proc3825162.chain_2599	2
scaffold_4	retained_intron	16912206	16912492	+	asmbl_42011	none	STRG.5280.4	1	STRG.5280.2	1
scaffold_27	ends_in_intron	391149	391149	-	asmbl_36686	none	blat.proc3825162.chain_1813	1	STRG.28565.1,blat.proc3825162.chain_1812	2
scaffold_6	alt_acceptor	1740673	1740674	+	asmbl_46734	none	blat.proc3825150.chain_3229	1	STRG.7229.1,blat.proc3825150.chain_3232	2
scaffold_15	starts_in_intron	13945931	13945931	-	asmbl_14684,asmbl_14685	none	blat.proc3825156.chain_3672,blat.proc3825156.chain_3674	2	blat.proc3825156.chain_3670,blat.proc3825156.chain_3671	2
scaffold_10	alt_acceptor	6323878	6323879	-	asmbl_4448	none	STRG.12462.1,blat.proc3825154.chain_998	2	STRG.12462.2,STRG.12462.3,blat.proc3825154.chain_997	3
scaffold_7	alternate_exon	8614589	8614798	+	asmbl_50030	none	STRG.9097.2,blat.proc3825168.chain_1615	2	STRG.9097.1,blat.proc3825168.chain_1613	2
scaffold_10	alt_acceptor	8897211	8897212	-	asmbl_4621,asmbl_4633	none	blat.proc3825154.chain_1265,blat.proc3825154.chain_1268	2	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1269,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273	7
scaffold_1	starts_in_intron	10988640	10988640	+	asmbl_2047	none	Trinity_GG_17760_c0_g1_i2,blat.proc3825164.chain_846	2	STRG.718.1,blat.proc3825164.chain_845	2
scaffold_11	spliced_intron	6395847	6395959	-	asmbl_6708,asmbl_6711	none	STRG.13697.2,STRG.13697.4,Trinity_GG_7653_c0_g1_i3,blat.proc3825154.chain_2242	4	STRG.13697.1,STRG.13697.3,Trinity_GG_7653_c0_g1_i2,blat.proc3825154.chain_2241	4
scaffold_4	alt_acceptor	18117247	18117248	-	asmbl_43348	none	STRG.5417.1	1	STRG.5417.2	1
scaffold_14	spliced_intron	3160065	3160251	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11922	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	14	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	4
scaffold_26	starts_in_intron	3668378	3668378	+	asmbl_34809,asmbl_34810,asmbl_34813	none	blat.proc3825178.chain_1109,blat.proc3825178.chain_1110,blat.proc3825178.chain_1111	3	STRG.28048.1,blat.proc3825178.chain_1108	2
scaffold_15	alt_acceptor	11811869	11811870	-	asmbl_14534	none	STRG.18632.1,blat.proc3825156.chain_3510	2	STRG.18632.2	1
scaffold_8	retained_intron	4083068	4083191	+	asmbl_52814	none	blat.proc3825168.chain_2482	1	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2479,blat.proc3825168.chain_2480,blat.proc3825168.chain_2481	5
scaffold_12	starts_in_intron	14984979	14984979	+	asmbl_8103	none	Trinity_GG_25694_c1_g1_i3	1	STRG.15294.1,Trinity_GG_25694_c1_g1_i2	2
scaffold_7	starts_in_intron	5240145	5240145	+	asmbl_49799	none	Trinity_GG_22206_c2_g1_i1,blat.proc3825168.chain_1368	2	STRG.8866.1,STRG.8866.2,blat.proc3825168.chain_1363,blat.proc3825168.chain_1364,blat.proc3825168.chain_1365,blat.proc3825168.chain_1366	6
scaffold_19	skipped_exon	12107159	12107555	-	asmbl_22461	none	STRG.22539.4	1	STRG.22539.1,STRG.22539.5,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	4
scaffold_3	alt_donor	7291132	7291133	-	asmbl_38961,asmbl_38963	none	STRG.3330.1,STRG.3330.2,blat.proc3825148.chain_3216	3	STRG.3330.3,blat.proc3825148.chain_3215	2
scaffold_15	alt_donor	9858079	9858080	-	asmbl_14414,asmbl_14417	none	STRG.18501.1,STRG.18501.2,Trinity_GG_10363_c0_g1_i1,blat.proc3825156.chain_3301	4	STRG.18501.3	1
scaffold_28	alt_acceptor	4207222	4207223	+	asmbl_37519,asmbl_37520,asmbl_37523	none	STRG.29616.1,STRG.29616.5,Trinity_GG_33739_c0_g1_i5,blat.proc3825178.chain_2812	4	STRG.29616.4,blat.proc3825178.chain_2815	2
scaffold_22	alt_donor	6064516	6064517	+	asmbl_30092	none	blat.proc3825176.chain_2078	1	blat.proc3825176.chain_2077	1
scaffold_14	alt_acceptor	8610953	8610954	-	asmbl_13329	none	STRG.17296.1,blat.proc3825156.chain_2122	2	STRG.17296.2,blat.proc3825156.chain_2120	2
scaffold_1	alt_donor	5765390	5765391	+	asmbl_1793	none	STRG.380.2,blat.proc3825164.chain_521	2	STRG.380.1,Trinity_GG_17567_c1_g1_i1,blat.proc3825164.chain_522	3
scaffold_6	starts_in_intron	7939558	7939558	-	asmbl_48513,asmbl_48515,asmbl_48517	none	STRG.7676.2,STRG.7676.4,blat.proc3825152.chain_71	3	STRG.7676.1,STRG.7676.3,blat.proc3825152.chain_69,blat.proc3825152.chain_72,blat.proc3825152.chain_73	5
scaffold_15	ends_in_intron	4566433	4566433	+	asmbl_15162	none	Trinity_GG_27289_c0_g1_i5,blat.proc3825172.chain_2868	2	STRG.18186.1,STRG.18186.2,Trinity_GG_27289_c0_g1_i1,Trinity_GG_27289_c0_g1_i2,Trinity_GG_27289_c0_g1_i3,Trinity_GG_27289_c0_g1_i4,blat.proc3825172.chain_2865,blat.proc3825172.chain_2866,blat.proc3825172.chain_2867,blat.proc3825172.chain_2869	10
scaffold_1	starts_in_intron	8144222	8144222	+	asmbl_1929	none	Trinity_GG_17664_c0_g1_i1,blat.proc3825164.chain_701	2	STRG.542.1	1
scaffold_2	retained_exon	9140183	9140186	-	asmbl_23352,asmbl_23353	none	blat.proc3825148.chain_2180,blat.proc3825148.chain_2181	2	STRG.2159.1,STRG.2159.2	2
scaffold_9	alternate_exon	3676842	3676946	-	asmbl_54921,asmbl_54927,asmbl_54928	none	STRG.10993.1,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	5	Trinity_GG_6077_c0_g2_i2	1
scaffold_16	skipped_exon	318247	318842	+	asmbl_16024	none	STRG.19023.1,Trinity_GG_27740_c0_g1_i3,blat.proc3825172.chain_3678	3	STRG.19023.2,blat.proc3825172.chain_3680	2
scaffold_5	alt_donor	10983639	10983640	+	asmbl_45719	none	STRG.6378.1	1	STRG.6378.2	1
scaffold_19	retained_intron	13003307	13003408	+	asmbl_21837	none	Trinity_GG_29821_c0_g1_i10,blat.proc3825174.chain_3645	2	STRG.22623.1,STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i13,Trinity_GG_29821_c0_g1_i5,blat.proc3825174.chain_3643,blat.proc3825174.chain_3646,blat.proc3825174.chain_3651	8
scaffold_5	spliced_intron	15766542	15766727	+	asmbl_46014,asmbl_46018,asmbl_46019,asmbl_46020,asmbl_46022	none	STRG.6771.1,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	6	blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2920	3
scaffold_11	skipped_exon	11943634	11944952	-	asmbl_7051	none	STRG.14177.6	1	STRG.14177.4,blat.proc3825154.chain_2596	2
scaffold_18	alternate_exon	7866960	7866989	-	asmbl_19981	none	STRG.21486.2,blat.proc3825158.chain_2405	2	STRG.21486.1,blat.proc3825158.chain_2406,blat.proc3825158.chain_2407	3
scaffold_1	alternate_exon	974814	975209	-	asmbl_41	none	STRG.58.2	1	STRG.58.1,blat.proc3825148.chain_78,blat.proc3825148.chain_79	3
scaffold_6	retained_intron	7174170	7174368	+	asmbl_47060	none	blat.proc3825168.chain_82	1	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84,blat.proc3825168.chain_85	7
scaffold_8	ends_in_intron	14430863	14430863	+	asmbl_53373	none	blat.proc3825168.chain_3101	1	STRG.10530.1,STRG.10530.2,blat.proc3825168.chain_3099,blat.proc3825168.chain_3100	4
scaffold_25	spliced_intron	3820300	3820402	-	asmbl_34157,asmbl_34158	none	STRG.27339.1,STRG.27339.2,Trinity_GG_15320_c0_g1_i2,blat.proc3825162.chain_701	4	Trinity_GG_15320_c0_g1_i1,blat.proc3825162.chain_700	2
scaffold_7	alt_acceptor	5240415	5240416	+	asmbl_49798,asmbl_49801,asmbl_49802,asmbl_49803	none	STRG.8866.1,blat.proc3825168.chain_1363,blat.proc3825168.chain_1364,blat.proc3825168.chain_1365,blat.proc3825168.chain_1366	5	STRG.8866.2	1
scaffold_11	spliced_intron	1286462	1286567	-	asmbl_6420	none	STRG.13318.1,blat.proc3825154.chain_1869,blat.proc3825154.chain_1870	3	blat.proc3825154.chain_1868	1
scaffold_21	alt_acceptor	6489515	6489516	+	asmbl_28651,asmbl_28653	none	STRG.24171.1,STRG.24171.3,blat.proc3825176.chain_1385	3	STRG.24171.2,blat.proc3825176.chain_1384	2
scaffold_14	alternate_exon	2379503	2379770	-	asmbl_12939,asmbl_12942	none	STRG.16854.4,STRG.16854.8	2	STRG.16854.2	1
scaffold_28	retained_exon	7234355	7234744	+	asmbl_37644	none	blat.proc3825178.chain_2932	1	STRG.29785.3	1
scaffold_21	alternate_exon	257646	257725	-	asmbl_27284	none	STRG.23725.2	1	blat.proc3825160.chain_807	1
scaffold_13	retained_intron	2507240	2507489	+	asmbl_10621,asmbl_10622	none	STRG.15559.3,Trinity_GG_25851_c0_g1_i1,Trinity_GG_25851_c0_g1_i2,blat.proc3825172.chain_286,blat.proc3825172.chain_287	5	STRG.15559.2,Trinity_GG_25851_c0_g1_i4,blat.proc3825172.chain_285	3
scaffold_2	alt_acceptor	15457506	15457507	-	asmbl_23627	none	STRG.2501.2	1	STRG.2501.1,blat.proc3825148.chain_2433	2
scaffold_18	retained_intron	2759098	2759324	-	asmbl_19737,asmbl_19738	none	STRG.21136.2,Trinity_GG_11829_c0_g1_i3,blat.proc3825158.chain_2080,blat.proc3825158.chain_2081	4	STRG.21136.1,blat.proc3825158.chain_2078,blat.proc3825158.chain_2079	3
scaffold_19	ends_in_intron	3671681	3671681	-	asmbl_22121	none	Trinity_GG_12309_c0_g2_i1,blat.proc3825158.chain_2900	2	STRG.22046.1,Trinity_GG_12309_c0_g1_i1,blat.proc3825158.chain_2893,blat.proc3825158.chain_2896,blat.proc3825158.chain_2898	5
scaffold_9	ends_in_intron	18414533	18414533	-	asmbl_55707	none	STRG.11887.2,Trinity_GG_6593_c0_g1_i2,blat.proc3825154.chain_391	3	STRG.11887.1,blat.proc3825154.chain_390	2
scaffold_10	retained_intron	8916906	8917220	+	asmbl_3340	none	Trinity_GG_24252_c0_g1_i4,blat.proc3825170.chain_1195	2	STRG.12642.1,STRG.12642.2,blat.proc3825170.chain_1194,blat.proc3825170.chain_1196,blat.proc3825170.chain_1197	5
scaffold_27	ends_in_intron	2874954	2874954	+	asmbl_36136	none	STRG.28770.2,blat.proc3825178.chain_1951	2	STRG.28770.1,blat.proc3825178.chain_1947	2
scaffold_18	retained_intron	2394215	2394398	-	asmbl_19723	none	STRG.21118.2,Trinity_GG_11836_c0_g1_i1,blat.proc3825158.chain_2094,blat.proc3825158.chain_2095	4	STRG.21118.1	1
scaffold_8	alt_acceptor	4194620	4194621	-	asmbl_51761	none	STRG.9896.2	1	blat.proc3825152.chain_2109	1
scaffold_9	alt_acceptor	16557869	16557870	-	asmbl_55581,asmbl_55582,asmbl_55583,asmbl_55584,asmbl_55585,asmbl_55590,asmbl_55591	none	STRG.11806.1,STRG.11806.2,STRG.11806.3,STRG.11806.4,STRG.11806.5,Trinity_GG_6524_c0_g2_i1,blat.proc3825154.chain_267,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274,blat.proc3825154.chain_276	11	blat.proc3825154.chain_270	1
scaffold_24	retained_intron	9117195	9117393	+	asmbl_32512	none	blat.proc3825178.chain_177	1	STRG.26942.1,blat.proc3825178.chain_172,blat.proc3825178.chain_173,blat.proc3825178.chain_175,blat.proc3825178.chain_178,blat.proc3825178.chain_179,blat.proc3825178.chain_180	7
scaffold_11	skipped_exon	3767492	3770068	-	asmbl_6574,asmbl_6575	none	STRG.13508.1,STRG.13508.4,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	4	STRG.13508.3	1
scaffold_28	spliced_intron	4839616	4841649	+	asmbl_37548	none	STRG.29649.1,Trinity_GG_33746_c0_g1_i2,blat.proc3825178.chain_2827	3	Trinity_GG_33746_c0_g1_i1,blat.proc3825178.chain_2826	2
scaffold_12	retained_intron	12836971	12837042	-	asmbl_8894	none	STRG.15179.1	1	STRG.15179.2	1
scaffold_25	starts_in_intron	9565813	9565813	-	asmbl_34512	none	blat.proc3825162.chain_1070	1	STRG.27775.1,Trinity_GG_15539_c0_g1_i6,blat.proc3825162.chain_1066	3
scaffold_7	alternate_exon	1524590	1524867	-	asmbl_50744	none	STRG.8654.2,Trinity_GG_4949_c0_g1_i2,blat.proc3825152.chain_1150	3	STRG.8654.1	1
scaffold_8	alternate_exon	16143501	16144228	-	asmbl_52365,asmbl_52366	none	blat.proc3825152.chain_2829,blat.proc3825152.chain_2831	2	STRG.10604.4,blat.proc3825152.chain_2833	2
scaffold_433	retained_intron	4666	4794	-	asmbl_43701	none	STRG.30329.2	1	STRG.30329.1	1
scaffold_19	retained_intron	5463673	5463985	+	asmbl_21376	none	STRG.22117.4	1	STRG.22117.1,blat.proc3825174.chain_3157,blat.proc3825174.chain_3160	3
scaffold_23	alt_acceptor	360406	360407	-	asmbl_30590,asmbl_30591,asmbl_30592,asmbl_30594,asmbl_30595,asmbl_30596,asmbl_30597,asmbl_30598,asmbl_30599	none	STRG.25564.1,STRG.25564.3,STRG.25564.4,Trinity_GG_14303_c0_g1_i3,Trinity_GG_14303_c0_g1_i4,Trinity_GG_14303_c0_g1_i9,blat.proc3825160.chain_2720,blat.proc3825160.chain_2721,blat.proc3825160.chain_2722,blat.proc3825160.chain_2723,blat.proc3825160.chain_2724,blat.proc3825160.chain_2725,blat.proc3825160.chain_2726,blat.proc3825160.chain_2727,blat.proc3825160.chain_2728	15	STRG.25564.2	1
scaffold_12	alt_acceptor	13029847	13029848	-	asmbl_8902,asmbl_8903	none	STRG.15189.2,blat.proc3825154.chain_3690	2	STRG.15189.1,STRG.15189.3,blat.proc3825154.chain_3688	3
scaffold_25	spliced_intron	5827048	5827635	-	asmbl_34287,asmbl_34288,asmbl_34290,asmbl_34291,asmbl_34296	none	STRG.27479.1,STRG.27479.2,STRG.27479.4,blat.proc3825162.chain_876,blat.proc3825162.chain_877	5	blat.proc3825162.chain_874,blat.proc3825162.chain_881	2
scaffold_28	ends_in_intron	4939818	4939818	-	asmbl_38232	none	Trinity_GG_16581_c0_g1_i2,blat.proc3825162.chain_2750	2	STRG.29648.1,Trinity_GG_16581_c0_g1_i1,blat.proc3825162.chain_2749	3
scaffold_18	retained_intron	5905385	5905424	-	asmbl_19875,asmbl_19877	none	STRG.21337.1,STRG.21337.2,Trinity_GG_11944_c1_g1_i1,blat.proc3825158.chain_2263	4	STRG.21337.4	1
scaffold_15	skipped_exon	4566359	4566986	+	asmbl_15160,asmbl_15163	none	STRG.18186.1,Trinity_GG_27289_c0_g1_i1,Trinity_GG_27289_c0_g1_i3,blat.proc3825172.chain_2867,blat.proc3825172.chain_2869	5	STRG.18186.2,Trinity_GG_27289_c0_g1_i2,Trinity_GG_27289_c0_g1_i4,blat.proc3825172.chain_2865,blat.proc3825172.chain_2866	5
scaffold_2	skipped_exon	10137083	10139477	+	asmbl_24697	none	STRG.2200.1,blat.proc3825164.chain_2404	2	STRG.2200.2,STRG.2200.3,blat.proc3825164.chain_2406,blat.proc3825164.chain_2407	4
scaffold_6	alternate_exon	1349069	1349370	-	asmbl_48100	none	STRG.7183.3	1	STRG.7183.1,STRG.7183.2,blat.proc3825150.chain_3279,blat.proc3825150.chain_3280	4
scaffold_24	alt_acceptor	7163771	7163772	+	asmbl_32371	none	STRG.26763.1,blat.proc3825176.chain_3718	2	STRG.26763.2	1
scaffold_26	ends_in_intron	9531130	9531130	+	asmbl_35242	none	blat.proc3825178.chain_1622	1	STRG.28501.1,blat.proc3825178.chain_1621	2
scaffold_11	alternate_exon	7047608	7047688	+	asmbl_5644,asmbl_5645,asmbl_5646,asmbl_5647,asmbl_5650,asmbl_5651	none	STRG.13733.1,STRG.13733.2,STRG.13733.3,STRG.13733.4,Trinity_GG_24878_c0_g1_i2,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i6,blat.proc3825170.chain_2271,blat.proc3825170.chain_2272,blat.proc3825170.chain_2273	10	STRG.13733.5,Trinity_GG_24878_c0_g1_i3,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2274	5
scaffold_1	spliced_intron	20135278	20135349	-	asmbl_1175	none	blat.proc3825148.chain_1398	1	STRG.1386.1,Trinity_GG_765_c0_g1_i2	2
scaffold_26	retained_intron	9029889	9029987	+	asmbl_35196	none	Trinity_GG_33058_c0_g1_i2,blat.proc3825178.chain_1570	2	STRG.28467.1,blat.proc3825178.chain_1569	2
scaffold_87	alt_donor	13971	13972	+	asmbl_53727	none	STRG.30146.3	1	STRG.30146.4,STRG.30146.5	2
scaffold_18	alternate_exon	1512474	1512767	+	asmbl_20358	none	STRG.21044.1,blat.proc3825174.chain_1986	2	STRG.21044.4	1
scaffold_2	alternate_exon	7214026	7214723	+	asmbl_24541	none	STRG.2054.4,Trinity_GG_18495_c0_g1_i3,blat.proc3825164.chain_2271	3	blat.proc3825164.chain_2274	1
scaffold_10	alt_acceptor	381369	381370	-	asmbl_3945	none	STRG.11922.2,Trinity_GG_6631_c0_g1_i3,blat.proc3825154.chain_459	3	STRG.11922.1,STRG.11922.3,STRG.11922.4,Trinity_GG_6631_c0_g1_i1,Trinity_GG_6631_c0_g1_i4,Trinity_GG_6631_c0_g1_i5,blat.proc3825154.chain_456,blat.proc3825154.chain_457,blat.proc3825154.chain_460,blat.proc3825154.chain_461,blat.proc3825154.chain_462	11
scaffold_7	alternate_exon	8558303	8563867	-	asmbl_51016	none	STRG.9087.2,Trinity_GG_5128_c0_g1_i1,blat.proc3825152.chain_1475	3	blat.proc3825152.chain_1485	1
scaffold_15	ends_in_intron	9640443	9640443	-	asmbl_14391	none	blat.proc3825156.chain_3259	1	Trinity_GG_10347_c2_g1_i7	1
scaffold_7	retained_intron	12452785	12453235	-	asmbl_51232,asmbl_51234	none	STRG.9354.2,STRG.9354.3	2	STRG.9354.1,Trinity_GG_5252_c0_g1_i20	2
scaffold_23	alt_donor	10938226	10938227	-	asmbl_31177	none	STRG.26299.3,blat.proc3825160.chain_3415	2	STRG.26299.1,STRG.26299.2	2
scaffold_9	spliced_intron	17851504	17851736	+	asmbl_54656	none	Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_572	2	STRG.11873.1,STRG.11873.3,Trinity_GG_23881_c0_g1_i10,blat.proc3825170.chain_573	4
scaffold_23	spliced_intron	3622625	3622729	+	asmbl_31456	none	STRG.25784.2	1	STRG.25784.1,blat.proc3825176.chain_2715	2
scaffold_2	alt_acceptor	13053020	13053021	+	asmbl_24808	none	STRG.2330.3,blat.proc3825164.chain_2480	2	STRG.2330.1,blat.proc3825164.chain_2479	2
scaffold_13	starts_in_intron	1338867	1338867	+	asmbl_10564	none	Trinity_GG_25848_c0_g1_i3,blat.proc3825172.chain_278	2	STRG.15506.1,STRG.15506.2,Trinity_GG_25848_c0_g1_i1,blat.proc3825172.chain_277,blat.proc3825172.chain_279	5
scaffold_11	retained_intron	854023	854153	+	asmbl_5306	none	Trinity_GG_24628_c0_g1_i5,blat.proc3825170.chain_1859	2	STRG.13285.1,blat.proc3825170.chain_1860,blat.proc3825170.chain_1863	3
scaffold_12	ends_in_intron	8915656	8915656	+	asmbl_7838	none	blat.proc3825170.chain_3476	1	STRG.14900.1,STRG.14900.2,blat.proc3825170.chain_3475	3
scaffold_2	retained_intron	15333838	15334058	+	asmbl_25030	none	STRG.2483.3,Trinity_GG_18716_c0_g1_i3	2	STRG.2483.2,Trinity_GG_18716_c0_g1_i2	2
scaffold_19	ends_in_intron	9533888	9533888	+	asmbl_21607	none	STRG.22388.3,blat.proc3825174.chain_3378	2	STRG.22388.1,STRG.22388.2,blat.proc3825174.chain_3376,blat.proc3825174.chain_3377	4
scaffold_16	starts_in_intron	8505691	8505691	-	asmbl_17247	none	blat.proc3825158.chain_600	1	STRG.19479.1,blat.proc3825158.chain_601,blat.proc3825158.chain_602	3
scaffold_25	spliced_intron	6068856	6068946	-	asmbl_34317,asmbl_34318,asmbl_34320,asmbl_34321,asmbl_34322,asmbl_34324	none	STRG.27490.1,STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_846,blat.proc3825162.chain_847,blat.proc3825162.chain_848,blat.proc3825162.chain_849,blat.proc3825162.chain_850	8	blat.proc3825162.chain_845	1
scaffold_14	alt_donor	14248531	14248532	+	asmbl_12531	none	STRG.17690.1	1	STRG.17690.2	1
scaffold_27	ends_in_intron	2842836	2842836	+	asmbl_36134	none	Trinity_GG_33229_c0_g1_i5,blat.proc3825178.chain_1920	2	STRG.28769.1,blat.proc3825178.chain_1919	2
scaffold_16	starts_in_intron	717244	717244	+	asmbl_16046	none	Trinity_GG_27724_c0_g1_i2,blat.proc3825172.chain_3652	2	STRG.19051.1,blat.proc3825172.chain_3651	2
scaffold_5	starts_in_intron	2231842	2231842	+	asmbl_45160	none	Trinity_GG_20450_c0_g1_i2,blat.proc3825166.chain_1982	2	STRG.5759.1,blat.proc3825166.chain_1981	2
scaffold_2	spliced_intron	7776424	7777128	+	asmbl_24568	none	STRG.2073.1,Trinity_GG_18457_c0_g1_i1	2	Trinity_GG_18457_c0_g1_i2,blat.proc3825164.chain_2177	2
scaffold_2	alt_donor	18307269	18307270	-	asmbl_23775	none	STRG.2714.2,blat.proc3825148.chain_2641	2	STRG.2714.3	1
scaffold_6	alternate_exon	17167195	17167219	+	asmbl_47735	none	Trinity_GG_21893_c0_g1_i1	1	blat.proc3825168.chain_794	1
scaffold_4	alt_donor	16341197	16341198	-	asmbl_43159	none	STRG.5202.2	1	STRG.5202.1	1
scaffold_24	retained_intron	6225543	6225855	-	asmbl_32939,asmbl_32941,asmbl_32944,asmbl_32947,asmbl_32948,asmbl_32950	none	STRG.26685.2,STRG.26685.3,STRG.26685.7,STRG.26685.8,Trinity_GG_14882_c0_g1_i10,blat.proc3825160.chain_3732,blat.proc3825160.chain_3733,blat.proc3825160.chain_3736	8	STRG.26685.1,STRG.26685.4,STRG.26685.5,STRG.26685.6,Trinity_GG_14882_c0_g1_i8,blat.proc3825160.chain_3734,blat.proc3825160.chain_3735,blat.proc3825160.chain_3737	8
scaffold_2	starts_in_intron	15270974	15270974	+	asmbl_25015,asmbl_25016	none	blat.proc3825164.chain_2617,blat.proc3825164.chain_2622	2	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7
scaffold_24	spliced_intron	5939387	5939564	+	asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32267,asmbl_32268,asmbl_32271,asmbl_32272,asmbl_32273,asmbl_32274,asmbl_32275,asmbl_32276	none	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	13	Trinity_GG_32084_c0_g1_i19,blat.proc3825176.chain_3666,blat.proc3825176.chain_3668,blat.proc3825176.chain_3669	4
scaffold_25	alternate_exon	991671	991784	+	asmbl_33367	none	STRG.27159.2	1	STRG.27159.1,blat.proc3825178.chain_303	2
scaffold_6	retained_intron	8460449	8460563	+	asmbl_47126	none	STRG.7725.1,blat.proc3825168.chain_154	2	STRG.7725.2,STRG.7725.3,STRG.7725.4,blat.proc3825168.chain_153	4
scaffold_1	alt_donor	16225433	16225434	+	asmbl_2467	none	STRG.1133.1,blat.proc3825164.chain_1303	2	STRG.1133.2,blat.proc3825164.chain_1301	2
scaffold_6	alt_donor	19116586	19116587	-	asmbl_49303	none	STRG.8585.5	1	STRG.8585.1,STRG.8585.3,Trinity_GG_4894_c0_g1_i1,Trinity_GG_4894_c0_g1_i2,blat.proc3825152.chain_1021,blat.proc3825152.chain_1022	6
scaffold_16	alternate_exon	13217490	13218082	+	asmbl_16658	none	blat.proc3825174.chain_692	1	STRG.19781.2,STRG.19781.3,blat.proc3825174.chain_693	3
scaffold_24	retained_intron	10480275	10480378	+	asmbl_32568	none	blat.proc3825178.chain_206	1	STRG.27018.2	1
scaffold_13	retained_exon	2972401	2972535	+	asmbl_10643	none	STRG.15597.1,blat.proc3825172.chain_359	2	STRG.15597.2,blat.proc3825172.chain_358	2
scaffold_5	alt_acceptor	5169340	5169341	-	asmbl_44033	none	STRG.5968.1	1	STRG.5968.2	1
scaffold_26	retained_intron	3573675	3573769	+	asmbl_34796	none	blat.proc3825178.chain_1071	1	STRG.28034.1,blat.proc3825178.chain_1072	2
scaffold_6	retained_intron	3291018	3291248	+	asmbl_46826	none	Trinity_GG_21301_c0_g1_i5,blat.proc3825166.chain_3459	2	STRG.7335.1,blat.proc3825166.chain_3456,blat.proc3825166.chain_3457,blat.proc3825166.chain_3458	4
scaffold_4	alt_acceptor	6343092	6343093	+	asmbl_41400	none	STRG.4504.1,blat.proc3825166.chain_949	2	STRG.4504.2	1
scaffold_20	alt_acceptor	2403439	2403440	+	asmbl_26488	none	blat.proc3825176.chain_155	1	STRG.22972.2,blat.proc3825176.chain_156	2
scaffold_23	alternate_exon	6318077	6318195	-	asmbl_30976	none	STRG.25979.2,blat.proc3825160.chain_3176	2	STRG.25979.1	1
scaffold_4	retained_intron	4095323	4095843	+	asmbl_41220,asmbl_41227,asmbl_41229	none	STRG.4315.2,blat.proc3825166.chain_705,blat.proc3825166.chain_709	3	STRG.4315.3,blat.proc3825166.chain_707	2
scaffold_22	spliced_intron	11343600	11343820	-	asmbl_29664	none	STRG.25465.2,blat.proc3825160.chain_2647	2	Trinity_GG_14255_c0_g1_i1,blat.proc3825160.chain_2649	2
scaffold_8	starts_in_intron	10239542	10239542	+	asmbl_53164	none	Trinity_GG_22967_c0_g1_i4,blat.proc3825168.chain_2732	2	STRG.10282.2,blat.proc3825168.chain_2733	2
scaffold_10	retained_intron	716590	716682	-	asmbl_3986,asmbl_3987,asmbl_3990,asmbl_3992	none	STRG.11957.2,STRG.11957.3,STRG.11957.5,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541	5	STRG.11957.4	1
scaffold_17	alternate_exon	13072593	13072768	-	asmbl_18349	none	blat.proc3825158.chain_1807	1	STRG.20802.1,STRG.20802.2,blat.proc3825158.chain_1806	3
scaffold_14	starts_in_intron	8693044	8693044	+	asmbl_12264	none	Trinity_GG_26830_c0_g1_i2,blat.proc3825172.chain_2068	2	STRG.17304.1,blat.proc3825172.chain_2067	2
scaffold_24	alt_donor	4294806	4294807	-	asmbl_32868	none	STRG.26592.2,blat.proc3825160.chain_3716	2	STRG.26592.1,blat.proc3825160.chain_3717	2
scaffold_13	retained_exon	14563424	14563480	-	asmbl_10199	none	STRG.16504.5	1	STRG.16504.3,blat.proc3825156.chain_1270	2
scaffold_9	retained_intron	16570389	16570696	+	asmbl_54598,asmbl_54599,asmbl_54600,asmbl_54601,asmbl_54602,asmbl_54603,asmbl_54605	none	STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i19,Trinity_GG_23904_c0_g1_i21,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_610,blat.proc3825170.chain_612,blat.proc3825170.chain_613,blat.proc3825170.chain_614,blat.proc3825170.chain_616,blat.proc3825170.chain_617	13	STRG.11807.1,Trinity_GG_23904_c0_g1_i14,blat.proc3825170.chain_611,blat.proc3825170.chain_615	4
scaffold_8	alternate_exon	17302311	17302777	-	asmbl_52445	none	STRG.10653.3,blat.proc3825152.chain_2901	2	blat.proc3825152.chain_2899	1
scaffold_14	ends_in_intron	3244010	3244010	+	asmbl_11932	none	Trinity_GG_26577_c0_g1_i4,blat.proc3825172.chain_1619	2	STRG.16923.1,STRG.16923.2,Trinity_GG_26577_c0_g1_i1,blat.proc3825172.chain_1617,blat.proc3825172.chain_1620,blat.proc3825172.chain_1621,blat.proc3825172.chain_1622	7
scaffold_20	retained_intron	11948625	11948717	-	asmbl_26205	none	STRG.23700.3,blat.proc3825160.chain_680	2	STRG.23700.2,blat.proc3825160.chain_681	2
scaffold_4	spliced_intron	12628852	12629159	-	asmbl_42937,asmbl_42938	none	STRG.4902.1,STRG.4902.2,blat.proc3825150.chain_1038,blat.proc3825150.chain_1039	4	blat.proc3825150.chain_1040	1
scaffold_5	alternate_exon	16290204	16290247	+	asmbl_46079,asmbl_46080,asmbl_46081	none	STRG.6827.3,Trinity_GG_21041_c0_g1_i1,blat.proc3825166.chain_3001	3	STRG.6827.2,blat.proc3825166.chain_3002	2
scaffold_26	starts_in_intron	8576816	8576816	+	asmbl_35182	none	Trinity_GG_33050_c0_g1_i2,blat.proc3825178.chain_1554	2	STRG.28441.1,STRG.28441.2,blat.proc3825178.chain_1555,blat.proc3825178.chain_1556	4
scaffold_8	spliced_intron	4960014	4960245	-	asmbl_51819,asmbl_51820,asmbl_51822	none	STRG.9966.1,blat.proc3825152.chain_2198,blat.proc3825152.chain_2199,blat.proc3825152.chain_2200	4	STRG.9966.2,Trinity_GG_5545_c0_g1_i1,blat.proc3825152.chain_2196	3
scaffold_12	starts_in_intron	4722836	4722836	-	asmbl_8431,asmbl_8437	none	STRG.14649.1,STRG.14649.3,blat.proc3825154.chain_3097	3	STRG.14649.2,STRG.14649.4	2
scaffold_13	starts_in_intron	3034545	3034545	+	asmbl_10653	none	blat.proc3825172.chain_387	1	STRG.15609.1,blat.proc3825172.chain_388	2
scaffold_18	starts_in_intron	13459650	13459650	+	asmbl_21020	none	blat.proc3825174.chain_2748	1	blat.proc3825174.chain_2751	1
scaffold_21	alt_donor	6988500	6988501	-	asmbl_27767	none	STRG.24228.1,blat.proc3825160.chain_1369	2	STRG.24228.2,blat.proc3825160.chain_1367	2
scaffold_12	retained_intron	14125377	14125446	-	asmbl_8988,asmbl_8990,asmbl_8993	none	STRG.15244.1,STRG.15244.2,Trinity_GG_8555_c1_g1_i1,blat.proc3825156.chain_79,blat.proc3825156.chain_80	5	STRG.15244.3,blat.proc3825156.chain_81	2
scaffold_11	starts_in_intron	13551236	13551236	-	asmbl_7136	none	blat.proc3825154.chain_2700	1	STRG.14212.1,blat.proc3825154.chain_2701,blat.proc3825154.chain_2702,blat.proc3825154.chain_2703	4
scaffold_4	alt_donor	3528358	3528359	-	asmbl_42449	none	STRG.4289.3	1	STRG.4289.5	1
scaffold_20	ends_in_intron	3908990	3908990	+	asmbl_26546	none	blat.proc3825176.chain_225,blat.proc3825176.chain_229	2	blat.proc3825176.chain_228,blat.proc3825176.chain_230	2
scaffold_16	starts_in_intron	4653837	4653837	+	asmbl_16194	none	blat.proc3825174.chain_138	1	STRG.19251.1,blat.proc3825174.chain_136	2
scaffold_11	alt_donor	11594045	11594046	+	asmbl_5976	none	Trinity_GG_25088_c0_g1_i1,blat.proc3825170.chain_2651	2	STRG.14089.1,Trinity_GG_25088_c0_g1_i2,blat.proc3825170.chain_2650	3
scaffold_19	alt_donor	11583724	11583725	-	asmbl_22429	none	STRG.22498.1,blat.proc3825158.chain_3237,blat.proc3825158.chain_3238	3	STRG.22498.2,blat.proc3825158.chain_3236	2
scaffold_26	alt_acceptor	7484711	7484712	-	asmbl_35708,asmbl_35709	none	blat.proc3825162.chain_1609,blat.proc3825162.chain_1611	2	STRG.28383.1,blat.proc3825162.chain_1610	2
scaffold_27	skipped_exon	3972325	3972647	+	asmbl_36242	none	STRG.28863.2	1	STRG.28863.1,Trinity_GG_33279_c0_g2_i1,blat.proc3825178.chain_2020,blat.proc3825178.chain_2021	4
scaffold_17	skipped_exon	7849232	7849831	+	asmbl_18923	none	STRG.20411.2	1	STRG.20411.1	1
scaffold_16	retained_intron	7702579	7702690	-	asmbl_17190	none	Trinity_GG_10894_c1_g1_i1,blat.proc3825158.chain_549	2	STRG.19419.2	1
scaffold_6	retained_intron	7185667	7185920	-	asmbl_48482	none	blat.proc3825150.chain_3700	1	STRG.7624.1,STRG.7624.2,blat.proc3825150.chain_3701	3
scaffold_10	spliced_intron	8894175	8894277	-	asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4626,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632	none	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	11	blat.proc3825154.chain_1263	1
scaffold_6	retained_exon	878681	878698	+	asmbl_46683	none	STRG.7158.3	1	STRG.7158.2	1
scaffold_6	alt_donor	17831117	17831118	+	asmbl_47787	none	Trinity_GG_34007_c0_g1_i1	1	STRG.8472.2,blat.proc3825168.chain_937	2
scaffold_1	spliced_intron	7814114	7814497	+	asmbl_1925	none	STRG.539.2	1	STRG.539.1,blat.proc3825164.chain_705	2
scaffold_15	alternate_exon	4132331	4133119	-	asmbl_14130	none	STRG.18161.2	1	Trinity_GG_10195_c0_g1_i3,blat.proc3825156.chain_2966	2
scaffold_21	starts_in_intron	7510512	7510512	-	asmbl_27837	none	blat.proc3825160.chain_1435	1	STRG.24285.1,blat.proc3825160.chain_1436	2
scaffold_10	spliced_intron	17325221	17326440	-	asmbl_5051	none	STRG.13182.1,blat.proc3825154.chain_1775	2	STRG.13182.3,blat.proc3825154.chain_1777	2
scaffold_17	ends_in_intron	14329903	14329903	+	asmbl_19393	none	blat.proc3825174.chain_1803	1	STRG.20909.1,blat.proc3825174.chain_1802	2
scaffold_19	ends_in_intron	10303810	10303810	+	asmbl_21647	none	blat.proc3825174.chain_3425	1	STRG.22416.1,STRG.22416.2,STRG.22416.4,Trinity_GG_29710_c0_g1_i3,blat.proc3825174.chain_3424,blat.proc3825174.chain_3426	6
scaffold_18	retained_intron	206330	206510	+	asmbl_20275	none	Trinity_GG_28858_c0_g1_i1,blat.proc3825174.chain_1923	2	STRG.20974.3,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1919	3
scaffold_19	alt_acceptor	11780571	11780572	+	asmbl_21720	none	STRG.22505.1,blat.proc3825174.chain_3538	2	blat.proc3825174.chain_3539	1
scaffold_23	alt_donor	7001760	7001761	-	asmbl_31005	none	STRG.26025.2	1	STRG.26025.1,STRG.26025.3,STRG.26025.4,blat.proc3825160.chain_3182	4
scaffold_10	alternate_exon	1477901	1477941	+	asmbl_2943	none	STRG.12019.2,Trinity_GG_23965_c0_g1_i1,blat.proc3825170.chain_712	3	STRG.12019.1	1
scaffold_5	retained_exon	2167666	2167719	-	asmbl_43875	none	STRG.5754.3	1	STRG.5754.2	1
scaffold_2	starts_in_intron	5717277	5717277	+	asmbl_24435	none	Trinity_GG_18408_c0_g1_i2,blat.proc3825164.chain_2083	2	STRG.1961.1,STRG.1961.2,STRG.1961.3,blat.proc3825164.chain_2084	4
scaffold_2	retained_exon	14751910	14752164	+	asmbl_24982	none	STRG.2476.1,blat.proc3825164.chain_2734	2	STRG.2476.2,blat.proc3825164.chain_2733	2
scaffold_28	alternate_exon	5240488	5240527	+	asmbl_37579	none	STRG.29677.3	1	STRG.29677.1,Trinity_GG_33753_c0_g1_i1,Trinity_GG_33753_c0_g1_i3,blat.proc3825178.chain_2846,blat.proc3825178.chain_2848	5
scaffold_26	starts_in_intron	9918799	9918799	-	asmbl_35800	none	blat.proc3825162.chain_1640	1	STRG.28525.1,STRG.28525.2,STRG.28525.3,Trinity_GG_15896_c0_g1_i4,blat.proc3825162.chain_1641	5
scaffold_16	alt_donor	4603726	4603727	+	asmbl_16189	none	STRG.19247.2	1	STRG.19247.1,blat.proc3825174.chain_56,blat.proc3825174.chain_57	3
scaffold_1	alternate_exon	5963373	5963470	+	asmbl_1806,asmbl_1807,asmbl_1808	none	STRG.400.2,STRG.400.3,Trinity_GG_17575_c0_g1_i4,blat.proc3825164.chain_542	4	STRG.400.1,blat.proc3825164.chain_540	2
scaffold_26	skipped_exon	1994624	1995447	+	asmbl_34729	none	STRG.27942.1	1	STRG.27942.2,blat.proc3825178.chain_995	2
scaffold_2	retained_intron	16101801	16102006	-	asmbl_23675	none	Trinity_GG_1350_c0_g1_i1,blat.proc3825148.chain_2442	2	STRG.2551.1,blat.proc3825148.chain_2443	2
scaffold_2	starts_in_intron	2791531	2791531	-	asmbl_22920	none	blat.proc3825148.chain_1603	1	STRG.1715.1,STRG.1715.2,STRG.1715.3,blat.proc3825148.chain_1602,blat.proc3825148.chain_1604,blat.proc3825148.chain_1605	6
scaffold_13	starts_in_intron	362973	362973	-	asmbl_9314	none	blat.proc3825156.chain_297	1	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,STRG.15442.5,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g1_i22,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_294,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_298,blat.proc3825156.chain_300	15
scaffold_13	ends_in_intron	5707040	5707040	-	asmbl_9713	none	blat.proc3825156.chain_731	1	STRG.15881.1,STRG.15881.2,STRG.15881.3,blat.proc3825156.chain_726,blat.proc3825156.chain_732	5
scaffold_9	spliced_intron	6902533	6902622	-	asmbl_55087,asmbl_55088,asmbl_55090	none	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3389,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	5	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3394	4
scaffold_10	spliced_intron	5495263	5495288	+	asmbl_3175	none	STRG.12383.1,blat.proc3825170.chain_1058	2	Trinity_GG_24173_c0_g1_i2	1
scaffold_2	starts_in_intron	7324252	7324252	-	asmbl_23249	none	Trinity_GG_1103_c0_g3_i1,blat.proc3825148.chain_1991	2	Trinity_GG_1103_c0_g2_i1,blat.proc3825148.chain_1990	2
scaffold_20	starts_in_intron	11381158	11381158	+	asmbl_27032,asmbl_27033	none	Trinity_GG_30352_c1_g1_i1,blat.proc3825176.chain_761	2	STRG.23648.1,STRG.23648.2,STRG.23648.3,STRG.23648.4,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i1,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_757,blat.proc3825176.chain_759	10
scaffold_26	ends_in_intron	5044969	5044969	+	asmbl_34948,asmbl_34954	none	blat.proc3825178.chain_1169,blat.proc3825178.chain_1180	2	STRG.28240.1,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1170,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179	10
scaffold_25	alt_acceptor	4818578	4818579	+	asmbl_33537	none	STRG.27418.2	1	STRG.27418.1,STRG.27418.3,Trinity_GG_32399_c0_g1_i1,Trinity_GG_32399_c0_g1_i2,blat.proc3825178.chain_470,blat.proc3825178.chain_471	6
scaffold_24	alt_donor	6841939	6841940	+	asmbl_32356	none	STRG.26735.1,Trinity_GG_32099_c0_g1_i1,blat.proc3825176.chain_3704	3	STRG.26735.2,Trinity_GG_32099_c0_g1_i2,blat.proc3825176.chain_3703	3
scaffold_9	alt_acceptor	8027771	8027772	-	asmbl_55115	none	STRG.11231.1,blat.proc3825152.chain_3477	2	STRG.11231.2,STRG.11231.3,blat.proc3825152.chain_3476	3
scaffold_13	starts_in_intron	7501939	7501939	-	asmbl_9881	none	blat.proc3825156.chain_907	1	STRG.16047.1,STRG.16047.2,STRG.16047.3,STRG.16047.4,blat.proc3825156.chain_899,blat.proc3825156.chain_902,blat.proc3825156.chain_903,blat.proc3825156.chain_904,blat.proc3825156.chain_906,blat.proc3825156.chain_908,blat.proc3825156.chain_909	11
scaffold_10	alt_acceptor	7276366	7276367	+	asmbl_3271	none	STRG.12540.3,blat.proc3825170.chain_1148	2	STRG.12540.4,blat.proc3825170.chain_1149	2
scaffold_2	spliced_intron	6768217	6768941	+	asmbl_24490,asmbl_24494	none	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150	5	Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i6,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152,blat.proc3825164.chain_2153	6
scaffold_5	retained_exon	3772855	3772938	+	asmbl_45237,asmbl_45239	none	STRG.5842.3,blat.proc3825166.chain_2079	2	STRG.5842.1	1
scaffold_14	retained_intron	2888654	2888781	-	asmbl_12984	none	blat.proc3825156.chain_1636	1	STRG.16887.1,STRG.16887.3,blat.proc3825156.chain_1637	3
scaffold_4	spliced_intron	8619480	8619572	-	asmbl_42780,asmbl_42783	none	STRG.4680.1,STRG.4680.2,blat.proc3825150.chain_900,blat.proc3825150.chain_901	4	blat.proc3825150.chain_899	1
scaffold_14	spliced_intron	217693	217891	-	asmbl_12809	none	STRG.16718.4	1	STRG.16718.1,STRG.16718.2,STRG.16718.3,blat.proc3825156.chain_1511,blat.proc3825156.chain_1512,blat.proc3825156.chain_1513,blat.proc3825156.chain_1514	7
scaffold_4	retained_intron	7346985	7347256	-	asmbl_42710	none	Trinity_GG_2565_c1_g1_i2,blat.proc3825150.chain_814	2	STRG.4567.1,blat.proc3825150.chain_813	2
scaffold_27	alt_acceptor	4528127	4528128	+	asmbl_36302	none	STRG.28906.1,Trinity_GG_33335_c7_g1_i1,blat.proc3825178.chain_2166	3	STRG.28906.2,blat.proc3825178.chain_2159	2
scaffold_12	starts_in_intron	12081198	12081198	+	asmbl_7981	none	blat.proc3825170.chain_3633	1	STRG.15126.1,blat.proc3825170.chain_3634	2
scaffold_14	spliced_intron	3097650	3097893	+	asmbl_11900	none	STRG.16902.1,blat.proc3825172.chain_1675	2	blat.proc3825172.chain_1674	1
scaffold_6	starts_in_intron	18084330	18084330	+	asmbl_47817	none	STRG.8502.3	1	blat.proc3825168.chain_1020,blat.proc3825168.chain_1021	2
scaffold_4	alternate_exon	16131718	16133428	-	asmbl_43143	none	STRG.5184.3	1	STRG.5184.4,blat.proc3825150.chain_1340	2
scaffold_12	alternate_exon	7650531	7650974	+	asmbl_7778	none	STRG.14846.3,Trinity_GG_25513_c0_g1_i1,blat.proc3825170.chain_3385	3	STRG.14846.1,Trinity_GG_25513_c0_g2_i1,blat.proc3825170.chain_3387	3
scaffold_3	alternate_exon	799227	801054	-	asmbl_38675,asmbl_38676	none	STRG.2908.2,STRG.2908.4,Trinity_GG_1570_c0_g1_i2,Trinity_GG_1570_c1_g1_i1,blat.proc3825148.chain_2793,blat.proc3825148.chain_2795,blat.proc3825148.chain_2796	7	STRG.2908.3	1
scaffold_20	retained_intron	11950865	11950950	-	asmbl_26209	none	blat.proc3825160.chain_682	1	blat.proc3825160.chain_679,blat.proc3825160.chain_681	2
scaffold_5	alt_donor	4596095	4596096	+	asmbl_45273,asmbl_45274	none	STRG.5907.1,STRG.5907.2,blat.proc3825166.chain_2109,blat.proc3825166.chain_2110	4	blat.proc3825166.chain_2108	1
scaffold_17	alternate_exon	5070318	5070394	+	asmbl_18802,asmbl_18803	none	STRG.20234.1,STRG.20234.2,Trinity_GG_28366_c0_g1_i1,Trinity_GG_28366_c0_g1_i2,blat.proc3825174.chain_1045,blat.proc3825174.chain_1046	6	STRG.20234.3,STRG.20234.4,STRG.20234.5	3
scaffold_13	alternate_exon	366932	367464	-	asmbl_9317	none	STRG.15442.3	1	Trinity_GG_8663_c0_g1_i21,blat.proc3825156.chain_298	2
scaffold_17	alternate_exon	2532998	2534984	-	asmbl_17756,asmbl_17757,asmbl_17759	none	STRG.20049.1,STRG.20049.2,blat.proc3825158.chain_1071,blat.proc3825158.chain_1072,blat.proc3825158.chain_1073	5	STRG.20049.3,blat.proc3825158.chain_1076	2
scaffold_14	ends_in_intron	9276708	9276708	-	asmbl_13368	none	STRG.17338.6,blat.proc3825156.chain_2205	2	STRG.17338.1,STRG.17338.2,STRG.17338.4,blat.proc3825156.chain_2200,blat.proc3825156.chain_2202,blat.proc3825156.chain_2203,blat.proc3825156.chain_2204	7
scaffold_1	alt_donor	16839774	16839775	-	asmbl_1020	none	STRG.1183.2	1	STRG.1183.1,blat.proc3825148.chain_1081	2
scaffold_9	alt_acceptor	16712635	16712636	-	asmbl_55618	none	STRG.11817.2	1	STRG.11817.1,Trinity_GG_6533_c0_g1_i1,blat.proc3825154.chain_301	3
scaffold_13	alt_acceptor	8211272	8211273	-	asmbl_9952	none	STRG.16112.2	1	STRG.16112.1	1
scaffold_8	alt_donor	18250057	18250058	-	asmbl_52524,asmbl_52525	none	STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3018	5	STRG.10728.1,STRG.10728.2,STRG.10728.3,blat.proc3825152.chain_3015,blat.proc3825152.chain_3016,blat.proc3825152.chain_3017,blat.proc3825152.chain_3019	7
scaffold_8	skipped_exon	9866167	9867156	+	asmbl_53118	none	blat.proc3825168.chain_2817	1	STRG.10233.2,blat.proc3825168.chain_2818,blat.proc3825168.chain_2819,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	5
scaffold_22	alternate_exon	8196272	8196411	+	asmbl_30271	none	STRG.25176.2	1	STRG.25176.1	1
scaffold_16	skipped_exon	206267	206971	+	asmbl_16004,asmbl_16005	none	STRG.19008.1,Trinity_GG_27729_c0_g1_i2,Trinity_GG_27729_c0_g1_i3,blat.proc3825172.chain_3659,blat.proc3825172.chain_3660	5	Trinity_GG_27729_c0_g1_i1,blat.proc3825172.chain_3661	2
scaffold_16	starts_in_intron	11396245	11396245	-	asmbl_17344	none	Trinity_GG_11017_c0_g1_i1,blat.proc3825158.chain_728	2	STRG.19673.1,STRG.19673.3,STRG.19673.4,STRG.19673.6,STRG.19673.7,blat.proc3825158.chain_729	6
scaffold_5	retained_intron	9853206	9853277	-	asmbl_44305	none	STRG.6308.2	1	STRG.6308.1	1
scaffold_23	retained_intron	10978092	10978827	+	asmbl_31899,asmbl_31900,asmbl_31901,asmbl_31902,asmbl_31905	none	Trinity_GG_31796_c0_g1_i6,blat.proc3825176.chain_3177,blat.proc3825176.chain_3178,blat.proc3825176.chain_3179,blat.proc3825176.chain_3181,blat.proc3825176.chain_3183	6	STRG.26307.1,STRG.26307.2,STRG.26307.4,blat.proc3825176.chain_3182,blat.proc3825176.chain_3184	5
scaffold_7	spliced_intron	4930321	4930697	+	asmbl_49772,asmbl_49773,asmbl_49775,asmbl_49776,asmbl_49777	none	STRG.8852.1,STRG.8852.2,STRG.8852.3,blat.proc3825168.chain_1345,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1352	7	blat.proc3825168.chain_1344,blat.proc3825168.chain_1346	2
scaffold_7	alternate_exon	11246854	11247448	+	asmbl_50166	none	STRG.9274.1	1	STRG.9274.2,STRG.9274.3,Trinity_GG_22459_c0_g1_i2,blat.proc3825168.chain_1777,blat.proc3825168.chain_1778	5
scaffold_5	alternate_exon	5040071	5040777	+	asmbl_45327,asmbl_45328,asmbl_45331	none	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2127,blat.proc3825166.chain_2128	5	STRG.5958.3,STRG.5958.4,Trinity_GG_20544_c2_g1_i1,blat.proc3825166.chain_2126,blat.proc3825166.chain_2130	5
scaffold_26	skipped_exon	5647284	5649356	-	asmbl_35609	none	STRG.28272.2,blat.proc3825162.chain_1531	2	STRG.28272.1,STRG.28272.3,blat.proc3825162.chain_1526,blat.proc3825162.chain_1527,blat.proc3825162.chain_1528,blat.proc3825162.chain_1529,blat.proc3825162.chain_1530	7
scaffold_1	retained_intron	6283987	6284587	-	asmbl_334	none	STRG.423.6,Trinity_GG_229_c0_g1_i13,blat.proc3825148.chain_413	3	STRG.423.1,STRG.423.5,Trinity_GG_229_c0_g1_i9,blat.proc3825148.chain_412,blat.proc3825148.chain_417,blat.proc3825148.chain_418	6
scaffold_5	alternate_exon	13115770	13115864	-	asmbl_44519	none	STRG.6549.1,blat.proc3825150.chain_2727	2	STRG.6549.2,blat.proc3825150.chain_2726	2
scaffold_11	retained_intron	9018053	9018198	-	asmbl_6902	none	STRG.13940.2,blat.proc3825154.chain_2405	2	STRG.13940.1,blat.proc3825154.chain_2408,blat.proc3825154.chain_2410	3
scaffold_13	retained_intron	3429569	3429691	+	asmbl_10689	none	STRG.15654.2,Trinity_GG_25887_c0_g1_i4,blat.proc3825172.chain_351	3	STRG.15654.1,Trinity_GG_25887_c0_g1_i1,Trinity_GG_25887_c0_g1_i3,blat.proc3825172.chain_352,blat.proc3825172.chain_354	5
scaffold_10	alt_donor	10831410	10831411	-	asmbl_4762	none	STRG.12770.1,blat.proc3825154.chain_1399	2	STRG.12770.2	1
scaffold_14	alt_acceptor	11076256	11076257	-	asmbl_13446	none	STRG.17446.1	1	STRG.17446.2,STRG.17446.3,blat.proc3825156.chain_2240	3
scaffold_15	ends_in_intron	12436772	12436772	+	asmbl_15571	none	blat.proc3825172.chain_3335	1	STRG.18701.1,blat.proc3825172.chain_3343	2
scaffold_15	retained_intron	9732951	9733059	-	asmbl_14404	none	STRG.18492.4,Trinity_GG_10360_c0_g1_i2,blat.proc3825156.chain_3289	3	STRG.18492.1,STRG.18492.2,STRG.18492.3,blat.proc3825156.chain_3291	4
scaffold_13	spliced_intron	2507577	2507742	+	asmbl_10619,asmbl_10620,asmbl_10621	none	STRG.15559.1,STRG.15559.2,STRG.15559.3,Trinity_GG_25851_c0_g1_i2,Trinity_GG_25851_c0_g1_i4,Trinity_GG_25851_c0_g1_i5,blat.proc3825172.chain_284,blat.proc3825172.chain_285,blat.proc3825172.chain_286	9	Trinity_GG_25851_c0_g1_i1,blat.proc3825172.chain_287	2
scaffold_10	starts_in_intron	4272792	4272792	-	asmbl_4280	none	blat.proc3825154.chain_754	1	STRG.12265.1,blat.proc3825154.chain_755	2
scaffold_25	ends_in_intron	290185	290185	+	asmbl_33320	none	blat.proc3825178.chain_271	1	STRG.27068.1,STRG.27068.2	2
scaffold_1	alt_acceptor	19386816	19386817	+	asmbl_2594	none	STRG.1350.1,blat.proc3825164.chain_1424	2	STRG.1350.2	1
scaffold_21	alternate_exon	705871	705966	-	asmbl_27352	none	Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793	2	Trinity_GG_13202_c0_g1_i4,blat.proc3825160.chain_797	2
scaffold_15	alt_acceptor	13659430	13659431	+	asmbl_15648	none	STRG.18795.2	1	STRG.18795.1,blat.proc3825172.chain_3360	2
scaffold_5	spliced_intron	9704092	9704702	-	asmbl_44293	none	STRG.6293.2,blat.proc3825150.chain_2499	2	STRG.6293.3,Trinity_GG_3551_c0_g1_i17,blat.proc3825150.chain_2501	3
scaffold_13	alternate_exon	366022	366248	-	asmbl_9310	none	Trinity_GG_8663_c0_g1_i19,blat.proc3825156.chain_290	2	STRG.15442.2,Trinity_GG_8663_c0_g1_i17,blat.proc3825156.chain_296	3
scaffold_8	starts_in_intron	6272964	6272964	+	asmbl_52956	none	Trinity_GG_22901_c0_g1_i1,blat.proc3825168.chain_2599	2	STRG.10029.1,blat.proc3825168.chain_2598	2
scaffold_19	starts_in_intron	12469842	12469842	-	asmbl_22488	none	STRG.22587.2,blat.proc3825158.chain_3392	2	STRG.22587.1,blat.proc3825158.chain_3393,blat.proc3825158.chain_3394	3
scaffold_14	retained_intron	11573661	11574063	-	asmbl_13496,asmbl_13497	none	STRG.17499.1,STRG.17499.4,Trinity_GG_9808_c0_g2_i1,blat.proc3825156.chain_2305	4	STRG.17499.2,STRG.17499.3,blat.proc3825156.chain_2304	3
scaffold_2	alt_donor	10586836	10586837	+	asmbl_24704	none	STRG.2219.1,blat.proc3825164.chain_2397	2	blat.proc3825164.chain_2396	1
scaffold_6	starts_in_intron	5017605	5017605	-	asmbl_48382	none	STRG.7474.1,blat.proc3825150.chain_3601	2	STRG.7474.2	1
scaffold_2	spliced_intron	15270410	15270515	+	asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25018,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	6	blat.proc3825164.chain_2618	1
scaffold_21	alt_acceptor	2267952	2267953	+	asmbl_28372	none	STRG.23848.1,blat.proc3825176.chain_1002	2	STRG.23848.2	1
scaffold_2	spliced_intron	8148213	8148395	-	asmbl_23317	none	STRG.2099.1,blat.proc3825148.chain_2126	2	Trinity_GG_1167_c0_g1_i2,blat.proc3825148.chain_2124	2
scaffold_8	alternate_exon	16228555	16228838	+	asmbl_53437	none	STRG.10614.2,Trinity_GG_23224_c0_g1_i2,blat.proc3825168.chain_3188	3	STRG.10614.1,Trinity_GG_23224_c0_g1_i3,blat.proc3825168.chain_3186	3
scaffold_10	retained_exon	6598566	6598635	-	asmbl_4477,asmbl_4479	none	STRG.12480.1,blat.proc3825154.chain_991,blat.proc3825154.chain_992	3	STRG.12480.2	1
scaffold_13	retained_intron	7192853	7192955	-	asmbl_9859	none	STRG.16016.4,Trinity_GG_9030_c0_g1_i1,blat.proc3825156.chain_959	3	STRG.16016.1,STRG.16016.2,STRG.16016.3,blat.proc3825156.chain_957,blat.proc3825156.chain_958,blat.proc3825156.chain_960,blat.proc3825156.chain_961	7
scaffold_22	retained_intron	4278389	4278555	-	asmbl_29234	none	STRG.24843.1,Trinity_GG_13898_c0_g1_i1,blat.proc3825160.chain_2048	3	STRG.24843.2	1
scaffold_22	starts_in_intron	2398364	2398364	+	asmbl_29939,asmbl_29943	none	STRG.24781.2,blat.proc3825176.chain_1825	2	STRG.24781.1,blat.proc3825176.chain_1827,blat.proc3825176.chain_1828	3
scaffold_12	alt_donor	9236366	9236367	-	asmbl_8664,asmbl_8667,asmbl_8670	none	STRG.14939.1,blat.proc3825154.chain_3450,blat.proc3825154.chain_3454	3	STRG.14939.5,blat.proc3825154.chain_3447,blat.proc3825154.chain_3455,blat.proc3825154.chain_3456	4
scaffold_12	spliced_intron	4720907	4720996	-	asmbl_8431,asmbl_8432,asmbl_8434,asmbl_8435,asmbl_8436,asmbl_8437	none	STRG.14649.1,STRG.14649.2,STRG.14649.3,STRG.14649.4,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3100,blat.proc3825154.chain_3101	8	Trinity_GG_8146_c0_g1_i5,blat.proc3825154.chain_3098	2
scaffold_11	alt_donor	11937828	11937829	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.2,STRG.14177.3	2
scaffold_11	ends_in_intron	9018362	9018362	-	asmbl_6903,asmbl_6907	none	Trinity_GG_7749_c0_g1_i4,blat.proc3825154.chain_2406,blat.proc3825154.chain_2411	3	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2407,blat.proc3825154.chain_2408,blat.proc3825154.chain_2410	6
scaffold_10	alt_donor	5811415	5811416	+	asmbl_3203,asmbl_3205	none	STRG.12403.1,blat.proc3825170.chain_1096,blat.proc3825170.chain_1097	3	STRG.12403.2,STRG.12403.3,blat.proc3825170.chain_1095	3
scaffold_5	retained_intron	13825214	13825331	-	asmbl_44570	none	STRG.6600.2	1	STRG.6600.1,Trinity_GG_3707_c0_g1_i1,blat.proc3825150.chain_2790	3
scaffold_15	starts_in_intron	8986684	8986684	+	asmbl_15376	none	blat.proc3825172.chain_3140	1	STRG.18445.1,STRG.18445.2,blat.proc3825172.chain_3138,blat.proc3825172.chain_3139,blat.proc3825172.chain_3141	5
scaffold_12	alt_donor	12285561	12285562	-	asmbl_8852	none	STRG.15127.3	1	STRG.15127.1,blat.proc3825154.chain_3636,blat.proc3825154.chain_3637	3
scaffold_3	spliced_intron	7908386	7908760	-	asmbl_38995	none	STRG.3373.1,blat.proc3825148.chain_3180	2	STRG.3373.2,blat.proc3825148.chain_3179	2
scaffold_15	spliced_intron	15434376	15435512	-	asmbl_14784,asmbl_14786	none	STRG.18932.2,blat.proc3825156.chain_3731,blat.proc3825156.chain_3733	3	STRG.18932.1,STRG.18932.3,Trinity_GG_10599_c0_g1_i5,Trinity_GG_10599_c0_g1_i6,blat.proc3825156.chain_3730,blat.proc3825156.chain_3732	6
scaffold_24	spliced_intron	10605221	10605541	+	asmbl_32581	none	Trinity_GG_32236_c0_g1_i3,blat.proc3825178.chain_219	2	blat.proc3825178.chain_222	1
scaffold_1	retained_intron	11662174	11662307	+	asmbl_2123	none	blat.proc3825164.chain_815	1	STRG.777.1	1
scaffold_13	retained_intron	16138073	16138097	+	asmbl_11554	none	STRG.16653.3	1	STRG.16653.1	1
scaffold_19	alt_acceptor	6239022	6239023	-	asmbl_22199	none	blat.proc3825158.chain_2965	1	STRG.22164.1	1
scaffold_9	spliced_intron	9405231	9405353	-	asmbl_55163	none	STRG.11299.1,blat.proc3825152.chain_3482	2	Trinity_GG_6227_c0_g1_i2,Trinity_GG_6227_c0_g1_i3,blat.proc3825152.chain_3480,blat.proc3825152.chain_3481	4
scaffold_20	alt_donor	11146827	11146828	+	asmbl_27022	none	STRG.23640.1	1	STRG.23640.2,STRG.23640.3,Trinity_GG_30351_c0_g1_i1,Trinity_GG_30351_c0_g1_i3,Trinity_GG_30351_c0_g1_i5,blat.proc3825176.chain_748,blat.proc3825176.chain_749,blat.proc3825176.chain_752	8
scaffold_27	alternate_exon	9099303	9099523	+	asmbl_36506	none	blat.proc3825178.chain_2365	1	STRG.29163.1,STRG.29163.2,blat.proc3825178.chain_2361,blat.proc3825178.chain_2362,blat.proc3825178.chain_2364	5
scaffold_15	alt_donor	6958910	6958911	-	asmbl_14273,asmbl_14274	none	STRG.18300.3,blat.proc3825156.chain_3146	2	STRG.18300.1,STRG.18300.2,blat.proc3825156.chain_3145,blat.proc3825156.chain_3147	4
scaffold_25	starts_in_intron	4597834	4597834	-	asmbl_34216	none	Trinity_GG_15338_c0_g1_i2	1	STRG.27399.1,Trinity_GG_15338_c0_g1_i1	2
scaffold_175	ends_in_intron	8401	8401	-	asmbl_19552	none	STRG.30213.2	1	STRG.30213.1	1
scaffold_23	spliced_intron	3656249	3656339	+	asmbl_31462,asmbl_31463	none	STRG.25792.1,Trinity_GG_31535_c0_g1_i1,blat.proc3825176.chain_2718,blat.proc3825176.chain_2719	4	STRG.25792.2,Trinity_GG_31535_c0_g1_i3,blat.proc3825176.chain_2720	3
scaffold_18	alt_acceptor	1671556	1671557	+	asmbl_20373	none	STRG.21050.2,blat.proc3825174.chain_1997	2	STRG.21050.1,blat.proc3825174.chain_1998	2
scaffold_7	alternate_exon	17990417	17990844	+	asmbl_50508	none	STRG.9639.1	1	STRG.9639.3	1
scaffold_20	starts_in_intron	4385028	4385028	+	asmbl_26587	none	blat.proc3825176.chain_300	1	STRG.23125.1,STRG.23125.2,blat.proc3825176.chain_298,blat.proc3825176.chain_299	4
scaffold_22	spliced_intron	4226897	4227163	-	asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29222,asmbl_29223,asmbl_29225,asmbl_29226,asmbl_29227	none	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	10	blat.proc3825160.chain_2074	1
scaffold_16	retained_intron	8296144	8296212	+	asmbl_16388	none	STRG.19465.1	1	STRG.19465.2	1
scaffold_5	ends_in_intron	14262503	14262503	+	asmbl_45913,asmbl_45922	none	blat.proc3825166.chain_2783,blat.proc3825166.chain_2787	2	STRG.6638.1,STRG.6638.2,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2785,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	9
scaffold_23	alt_acceptor	2415138	2415139	+	asmbl_31405	none	STRG.25716.2	1	STRG.25716.1,STRG.25716.3,Trinity_GG_31508_c0_g1_i1,blat.proc3825176.chain_2676	4
scaffold_1	spliced_intron	12794976	12795080	-	asmbl_767	none	STRG.903.1,blat.proc3825148.chain_860	2	blat.proc3825148.chain_861	1
scaffold_27	alternate_exon	145657	145925	-	asmbl_36643	none	STRG.28551.3,Trinity_GG_15968_c0_g1_i5,blat.proc3825162.chain_1771	3	STRG.28551.2	1
scaffold_26	starts_in_intron	3720106	3720106	+	asmbl_34822	none	Trinity_GG_32783_c0_g1_i2,blat.proc3825178.chain_1089	2	STRG.28053.1,Trinity_GG_32783_c0_g1_i1,blat.proc3825178.chain_1088	3
scaffold_8	retained_intron	4865417	4865526	+	asmbl_52866	none	blat.proc3825168.chain_2507	1	STRG.9949.1,blat.proc3825168.chain_2508	2
scaffold_13	skipped_exon	2322274	2325011	+	asmbl_10609	none	blat.proc3825172.chain_232	1	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.6,STRG.15564.7	6
scaffold_10	alternate_exon	16258044	16258562	+	asmbl_3711	none	STRG.13106.4	1	STRG.13106.2,Trinity_GG_24504_c0_g1_i2,blat.proc3825170.chain_1658,blat.proc3825170.chain_1659	4
scaffold_13	spliced_intron	3811189	3811295	-	asmbl_9582,asmbl_9585	none	STRG.15712.1,blat.proc3825156.chain_543,blat.proc3825156.chain_545	3	blat.proc3825156.chain_546	1
scaffold_2	retained_exon	12653219	12653271	-	asmbl_23474	none	STRG.2311.1,Trinity_GG_1253_c0_g1_i2,blat.proc3825148.chain_2269	3	STRG.2311.2,Trinity_GG_1253_c0_g1_i1,blat.proc3825148.chain_2270	3
scaffold_14	spliced_intron	15469859	15470058	+	asmbl_12600,asmbl_12601	none	STRG.17781.1,Trinity_GG_27042_c0_g1_i6,blat.proc3825172.chain_2425	3	blat.proc3825172.chain_2424	1
scaffold_1	alternate_exon	414524	414689	-	asmbl_19	none	STRG.24.1,blat.proc3825148.chain_37,blat.proc3825148.chain_38	3	STRG.24.2	1
scaffold_16	alternate_exon	7533047	7533708	+	asmbl_16348	none	STRG.19412.2	1	STRG.19412.3,blat.proc3825174.chain_294	2
scaffold_5	retained_intron	15043048	15043289	-	asmbl_44632,asmbl_44637	none	STRG.6698.4,STRG.6698.5,blat.proc3825150.chain_2832	3	STRG.6698.6,blat.proc3825150.chain_2831	2
scaffold_6	alternate_exon	15945071	15946118	+	asmbl_47681	none	STRG.8324.2	1	blat.proc3825152.chain_740	1
scaffold_1	spliced_intron	22129065	22129294	+	asmbl_2681	none	STRG.1477.2	1	STRG.1477.1	1
scaffold_3	starts_in_intron	4292357	4292357	+	asmbl_40002	none	Trinity_GG_19043_c0_g1_i5	1	STRG.3135.1,STRG.3135.3,blat.proc3825164.chain_3303	3
scaffold_6	alt_acceptor	13691124	13691125	+	asmbl_47529	none	STRG.8113.2,blat.proc3825168.chain_550	2	STRG.8113.1	1
scaffold_12	retained_intron	10341771	10341927	-	asmbl_8745	none	STRG.15008.2,blat.proc3825154.chain_3524	2	STRG.15008.1,blat.proc3825154.chain_3523	2
scaffold_16	alternate_exon	11433329	11434268	-	asmbl_17349	none	STRG.19672.1,blat.proc3825158.chain_749	2	STRG.19672.2	1
scaffold_12	starts_in_intron	5081255	5081255	+	asmbl_7643	none	blat.proc3825170.chain_3176	1	STRG.14680.1,blat.proc3825170.chain_3175,blat.proc3825170.chain_3178	3
scaffold_11	spliced_intron	4747068	4747472	+	asmbl_5512	none	STRG.13568.1	1	Trinity_GG_24745_c0_g1_i2,blat.proc3825170.chain_2063	2
scaffold_27	retained_intron	2998365	2998500	+	asmbl_36153	none	blat.proc3825178.chain_1905	1	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1902,blat.proc3825178.chain_1903,blat.proc3825178.chain_1904,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	10
scaffold_12	alt_acceptor	13029850	13029851	-	asmbl_8901,asmbl_8904	none	STRG.15189.1,STRG.15189.3,blat.proc3825154.chain_3688	3	STRG.15189.2,blat.proc3825154.chain_3690	2
scaffold_28	alt_acceptor	5914941	5914942	+	asmbl_37609	none	STRG.29720.3,Trinity_GG_33778_c0_g1_i1,blat.proc3825178.chain_2888	3	STRG.29720.1,STRG.29720.2,Trinity_GG_33778_c0_g1_i3,blat.proc3825178.chain_2889	4
scaffold_5	starts_in_intron	6737582	6737582	-	asmbl_44137	none	Trinity_GG_3371_c0_g2_i1,blat.proc3825150.chain_2196	2	STRG.6083.1,Trinity_GG_3371_c0_g1_i2,blat.proc3825150.chain_2194	3
scaffold_14	starts_in_intron	9995305	9995305	+	asmbl_12307	none	Trinity_GG_26865_c0_g1_i4,blat.proc3825172.chain_2122	2	STRG.17369.3,blat.proc3825172.chain_2121,blat.proc3825172.chain_2123	3
scaffold_10	spliced_intron	13471706	13472424	-	asmbl_4886,asmbl_4888	none	STRG.12943.2,blat.proc3825154.chain_1532,blat.proc3825154.chain_1533	3	STRG.12943.1,STRG.12943.4,Trinity_GG_7233_c0_g1_i1,Trinity_GG_7233_c0_g2_i3,blat.proc3825154.chain_1531,blat.proc3825154.chain_1535	6
scaffold_12	alt_acceptor	12843065	12843066	+	asmbl_8029	none	STRG.15180.1,blat.proc3825170.chain_3625	2	STRG.15180.2,blat.proc3825170.chain_3624	2
scaffold_15	alt_donor	4117723	4117724	-	asmbl_14127	none	STRG.18155.4	1	STRG.18155.2,blat.proc3825156.chain_2939	2
scaffold_19	starts_in_intron	598549	598549	+	asmbl_21189	none	Trinity_GG_29395_c0_g2_i1,blat.proc3825174.chain_2890	2	STRG.21841.1,blat.proc3825174.chain_2887,blat.proc3825174.chain_2888,blat.proc3825174.chain_2889	4
scaffold_26	alt_donor	6693191	6693192	-	asmbl_35693	none	STRG.28358.2,blat.proc3825162.chain_1590	2	STRG.28358.1,blat.proc3825162.chain_1591	2
scaffold_1	alt_donor	18485975	18485976	-	asmbl_1112	none	blat.proc3825148.chain_1321	1	STRG.1298.5,blat.proc3825148.chain_1320	2
scaffold_27	alt_acceptor	1553746	1553747	+	asmbl_36028	none	STRG.28644.4	1	STRG.28644.1,STRG.28644.2,STRG.28644.3,blat.proc3825178.chain_1762	4
scaffold_5	alternate_exon	10307278	10310780	+	asmbl_45670	none	STRG.6330.1,blat.proc3825166.chain_2544	2	Trinity_GG_20765_c0_g1_i3,blat.proc3825166.chain_2546	2
scaffold_21	retained_intron	8295961	8296045	-	asmbl_27919	none	STRG.24373.1,blat.proc3825160.chain_1540	2	STRG.24373.2,blat.proc3825160.chain_1539	2
scaffold_1	spliced_intron	10949081	10949745	+	asmbl_2038,asmbl_2039,asmbl_2040,asmbl_2041	none	STRG.715.3,blat.proc3825164.chain_859,blat.proc3825164.chain_862,blat.proc3825164.chain_863,blat.proc3825164.chain_864	5	STRG.715.2,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_861	4
scaffold_27	retained_intron	158035	158158	-	asmbl_36649	none	STRG.28549.2,Trinity_GG_15970_c0_g1_i3,blat.proc3825162.chain_1775	3	STRG.28549.1,STRG.28549.3,blat.proc3825162.chain_1774	3
scaffold_2	spliced_intron	14279595	14279835	+	asmbl_24897,asmbl_24899,asmbl_24900,asmbl_24902	none	STRG.2428.1,STRG.2428.2,STRG.2428.3,blat.proc3825164.chain_2593	4	STRG.2428.4,blat.proc3825164.chain_2596	2
scaffold_20	spliced_intron	9104952	9105052	+	asmbl_26825,asmbl_26828,asmbl_26831	none	STRG.23455.1,STRG.23455.2,Trinity_GG_30271_c0_g1_i1,Trinity_GG_30271_c0_g1_i2,blat.proc3825176.chain_612,blat.proc3825176.chain_615	6	blat.proc3825176.chain_616	1
scaffold_2	retained_exon	17613833	17613909	+	asmbl_25186	none	STRG.2653.2,blat.proc3825164.chain_2943	2	STRG.2653.1,blat.proc3825164.chain_2942	2
scaffold_8	ends_in_intron	11051457	11051457	+	asmbl_53191	none	blat.proc3825168.chain_2890	1	STRG.10316.1,STRG.10316.2,blat.proc3825168.chain_2891,blat.proc3825168.chain_2892	4
scaffold_10	starts_in_intron	6883922	6883922	-	asmbl_4519	none	Trinity_GG_7002_c0_g1_i2,blat.proc3825154.chain_1113	2	STRG.12514.1,Trinity_GG_7002_c0_g1_i1,blat.proc3825154.chain_1115	3
scaffold_10	retained_intron	8900622	8900805	-	asmbl_4635	none	STRG.12638.2	1	STRG.12638.1	1
scaffold_4	starts_in_intron	18525415	18525415	-	asmbl_43377	none	blat.proc3825150.chain_1657	1	STRG.5455.1,blat.proc3825150.chain_1656	2
scaffold_23	spliced_intron	6290510	6290714	-	asmbl_30968,asmbl_30971,asmbl_30972,asmbl_30973,asmbl_30974	none	STRG.25975.1,STRG.25975.3,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192,blat.proc3825160.chain_3193	9	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190	7
scaffold_5	retained_intron	14537738	14537847	+	asmbl_45942	none	STRG.6649.2,blat.proc3825166.chain_2797	2	STRG.6649.1,blat.proc3825166.chain_2796	2
scaffold_27	alternate_exon	2879381	2881195	+	asmbl_36144,asmbl_36145	none	STRG.28771.3,blat.proc3825178.chain_1939,blat.proc3825178.chain_1940	3	blat.proc3825178.chain_1942	1
scaffold_3	alt_donor	14313224	14313225	-	asmbl_39350,asmbl_39351	none	STRG.3771.1,STRG.3771.2,Trinity_GG_2080_c0_g1_i2,blat.proc3825148.chain_3677,blat.proc3825148.chain_3678	5	STRG.3771.3	1
scaffold_14	alt_acceptor	15565794	15565795	+	asmbl_12622	none	STRG.17796.2	1	blat.proc3825172.chain_2534	1
scaffold_6	spliced_intron	15762521	15764191	-	asmbl_49082,asmbl_49086	none	STRG.8318.1,STRG.8318.2,blat.proc3825152.chain_758	3	STRG.8318.3,blat.proc3825152.chain_757,blat.proc3825152.chain_759	3
scaffold_19	alternate_exon	9457177	9459937	+	asmbl_21594	none	STRG.22377.1,Trinity_GG_29686_c0_g1_i1,Trinity_GG_29686_c0_g1_i2,blat.proc3825174.chain_3385,blat.proc3825174.chain_3386,blat.proc3825174.chain_3388	6	STRG.22377.2,blat.proc3825174.chain_3390	2
scaffold_12	alt_donor	5463413	5463414	-	asmbl_8497,asmbl_8500,asmbl_8501	none	STRG.14703.2,STRG.14703.3,STRG.14703.5,blat.proc3825154.chain_3235	4	STRG.14703.1,STRG.14703.4,blat.proc3825154.chain_3236,blat.proc3825154.chain_3237	4
scaffold_25	spliced_intron	3737855	3737965	-	asmbl_34151	none	STRG.27326.1,blat.proc3825162.chain_681	2	blat.proc3825162.chain_680	1
scaffold_9	alt_acceptor	11543720	11543721	+	asmbl_54355,asmbl_54356	none	STRG.11471.1,Trinity_GG_23714_c0_g1_i1,Trinity_GG_23714_c0_g1_i2,blat.proc3825170.chain_295,blat.proc3825170.chain_296	5	STRG.11471.2,STRG.11471.3	2
scaffold_17	ends_in_intron	8222190	8222190	+	asmbl_18952,asmbl_18953,asmbl_18956,asmbl_18958	none	STRG.20449.2,STRG.20449.4,blat.proc3825174.chain_1239,blat.proc3825174.chain_1244	4	STRG.20449.1,STRG.20449.3,blat.proc3825174.chain_1242,blat.proc3825174.chain_1245,blat.proc3825174.chain_1248	5
scaffold_19	retained_intron	12208560	12208717	+	asmbl_21761,asmbl_21763	none	STRG.22551.2,Trinity_GG_29759_c0_g1_i3,Trinity_GG_29759_c0_g1_i5,blat.proc3825174.chain_3520,blat.proc3825174.chain_3522	5	STRG.22551.1,STRG.22551.3,Trinity_GG_29759_c0_g1_i1,blat.proc3825174.chain_3521	4
scaffold_25	ends_in_intron	9050569	9050569	+	asmbl_33774	none	blat.proc3825178.chain_818	1	STRG.27716.1,blat.proc3825178.chain_816,blat.proc3825178.chain_817	3
scaffold_14	alt_acceptor	6062173	6062174	+	asmbl_12049	none	Trinity_GG_26693_c0_g1_i1,blat.proc3825172.chain_1809	2	STRG.17065.1,STRG.17065.2	2
scaffold_9	alt_acceptor	4953014	4953015	-	asmbl_54981	none	STRG.11071.3,Trinity_GG_6140_c0_g1_i4	2	STRG.11071.1,blat.proc3825152.chain_3309	2
scaffold_25	alt_donor	7338412	7338413	+	asmbl_33668,asmbl_33670	none	STRG.27588.3,STRG.27588.4	2	STRG.27588.1,STRG.27588.2,Trinity_GG_32501_c0_g1_i3,Trinity_GG_32501_c0_g1_i6,blat.proc3825178.chain_656,blat.proc3825178.chain_657,blat.proc3825178.chain_659	7
scaffold_20	alt_donor	7146610	7146611	-	asmbl_25879	none	blat.proc3825176.chain_450	1	STRG.23280.1	1
scaffold_2	skipped_exon	13896835	13897401	-	asmbl_23537	none	STRG.2384.1,blat.proc3825148.chain_2392	2	STRG.2384.2,blat.proc3825148.chain_2389	2
scaffold_5	retained_intron	14262861	14263469	+	asmbl_45918,asmbl_45919,asmbl_45923	none	blat.proc3825166.chain_2789,blat.proc3825166.chain_2790,blat.proc3825166.chain_2791	3	STRG.6638.2,blat.proc3825166.chain_2785	2
scaffold_22	alternate_exon	11640414	11640754	-	asmbl_29690	none	STRG.25513.3	1	STRG.25513.1,STRG.25513.2,STRG.25513.4,Trinity_GG_14246_c0_g1_i1,blat.proc3825160.chain_2631	5
scaffold_5	alt_acceptor	15801946	15801947	-	asmbl_44730	none	STRG.6776.1	1	STRG.6776.2	1
scaffold_15	retained_exon	6957077	6957098	-	asmbl_14272	none	STRG.18300.2,blat.proc3825156.chain_3147	2	STRG.18300.1,blat.proc3825156.chain_3145,blat.proc3825156.chain_3146	3
scaffold_4	alt_acceptor	4121525	4121526	-	asmbl_42496	none	STRG.4329.1,blat.proc3825150.chain_593	2	STRG.4329.2	1
scaffold_15	spliced_intron	15414145	15414286	+	asmbl_15779,asmbl_15780,asmbl_15782,asmbl_15783	none	STRG.18953.4,blat.proc3825172.chain_3608,blat.proc3825172.chain_3609,blat.proc3825172.chain_3612	4	STRG.18953.2,STRG.18953.3,Trinity_GG_27701_c0_g1_i3,blat.proc3825172.chain_3613	4
scaffold_4	skipped_exon	246127	248695	+	asmbl_41092	none	STRG.4120.2	1	STRG.4120.1	1
scaffold_19	spliced_intron	3669778	3669984	-	asmbl_22117	none	STRG.22046.2,Trinity_GG_12309_c0_g1_i3,blat.proc3825158.chain_2897	3	Trinity_GG_12309_c0_g1_i5,blat.proc3825158.chain_2899	2
scaffold_6	alt_donor	600601	600602	-	asmbl_48049,asmbl_48050	none	STRG.7125.2,STRG.7125.3	2	STRG.7125.1,STRG.7125.4,STRG.7125.5,blat.proc3825150.chain_3224,blat.proc3825150.chain_3225	5
scaffold_5	starts_in_intron	18248178	18248178	+	asmbl_46223	none	STRG.6960.3,Trinity_GG_21136_c0_g1_i2,blat.proc3825166.chain_3160	3	STRG.6960.1,STRG.6960.2,blat.proc3825166.chain_3161,blat.proc3825166.chain_3162	4
scaffold_1	ends_in_intron	15129350	15129350	+	asmbl_2423,asmbl_2424	none	STRG.1087.2,STRG.1087.3,blat.proc3825164.chain_1249	3	STRG.1087.1,blat.proc3825164.chain_1247	2
scaffold_8	spliced_intron	5433999	5434185	+	asmbl_52885	none	blat.proc3825168.chain_2430	1	blat.proc3825168.chain_2431	1
scaffold_3	spliced_intron	3271219	3271370	-	asmbl_38764,asmbl_38765,asmbl_38766	none	STRG.3073.3,blat.proc3825148.chain_2950,blat.proc3825148.chain_2951	3	Trinity_GG_1668_c0_g1_i5,blat.proc3825148.chain_2949	2
scaffold_3	spliced_intron	14844379	14844569	+	asmbl_40555	none	STRG.3832.1,blat.proc3825166.chain_320	2	STRG.3832.2	1
scaffold_13	alt_acceptor	3098827	3098828	-	asmbl_9518	none	STRG.15617.1	1	STRG.15617.2,blat.proc3825156.chain_460	2
scaffold_6	spliced_intron	18269773	18269974	+	asmbl_47827	none	STRG.8501.2,blat.proc3825168.chain_978	2	STRG.8501.1,STRG.8501.3,Trinity_GG_21995_c0_g1_i1	3
scaffold_25	spliced_intron	3738082	3738200	-	asmbl_34151	none	STRG.27326.1,blat.proc3825162.chain_681	2	blat.proc3825162.chain_680	1
scaffold_18	alt_acceptor	1671568	1671569	+	asmbl_20372	none	STRG.21050.1,blat.proc3825174.chain_1998	2	STRG.21050.2,blat.proc3825174.chain_1997	2
scaffold_9	alt_donor	11889099	11889100	+	asmbl_54392	none	blat.proc3825170.chain_339	1	STRG.11516.1,STRG.11516.2	2
scaffold_1	starts_in_intron	12792149	12792149	-	asmbl_764	none	blat.proc3825148.chain_882	1	STRG.901.1,STRG.901.3,blat.proc3825148.chain_883,blat.proc3825148.chain_884	4
scaffold_9	starts_in_intron	8936089	8936089	+	asmbl_54184	none	blat.proc3825170.chain_96	1	STRG.11279.2,STRG.11279.3,blat.proc3825170.chain_94,blat.proc3825170.chain_95	4
scaffold_13	retained_intron	87947	88104	+	asmbl_10458	none	STRG.15429.1,Trinity_GG_25788_c0_g1_i2,blat.proc3825172.chain_142,blat.proc3825172.chain_144	4	STRG.15429.2,blat.proc3825172.chain_143	2
scaffold_6	ends_in_intron	12412638	12412638	-	asmbl_48802	none	STRG.7996.5,Trinity_GG_4546_c1_g1_i1,blat.proc3825152.chain_395	3	STRG.7996.1,STRG.7996.2,STRG.7996.3,STRG.7996.4,blat.proc3825152.chain_392,blat.proc3825152.chain_393,blat.proc3825152.chain_394	7
scaffold_8	alt_acceptor	18085071	18085072	-	asmbl_52502,asmbl_52508	none	STRG.10710.1,STRG.10710.3,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2982	4	STRG.10710.4,STRG.10710.5,Trinity_GG_5955_c0_g1_i2,blat.proc3825152.chain_2979	4
scaffold_3	alt_donor	3315174	3315175	+	asmbl_39951	none	blat.proc3825148.chain_2938	1	blat.proc3825148.chain_2937	1
scaffold_4	alt_acceptor	4113453	4113454	-	asmbl_42480,asmbl_42481,asmbl_42485,asmbl_42486	none	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_477,blat.proc3825150.chain_481,blat.proc3825150.chain_482	6	blat.proc3825150.chain_479	1
scaffold_5	ends_in_intron	9717939	9717939	+	asmbl_45639	none	blat.proc3825166.chain_2493	1	STRG.6285.1,STRG.6285.2,blat.proc3825166.chain_2490,blat.proc3825166.chain_2491	4
scaffold_26	alt_donor	8177441	8177442	+	asmbl_35162	none	STRG.28419.2,blat.proc3825178.chain_1523	2	STRG.28419.1,blat.proc3825178.chain_1521,blat.proc3825178.chain_1522	3
scaffold_2	alternate_exon	862960	863760	+	asmbl_24113,asmbl_24114	none	STRG.1562.1,STRG.1562.2,Trinity_GG_18206_c1_g1_i1,blat.proc3825164.chain_1700,blat.proc3825164.chain_1704	5	STRG.1562.3	1
scaffold_70	alt_acceptor	7908	7909	-	asmbl_51597	none	STRG.30108.2	1	STRG.30108.1,blat.proc3825178.chain_3226	2
scaffold_26	alt_donor	10154171	10154172	+	asmbl_35296	none	STRG.28534.2,Trinity_GG_33098_c0_g1_i2,blat.proc3825178.chain_1663	3	STRG.28534.1,STRG.28534.3,Trinity_GG_33098_c0_g1_i1,blat.proc3825178.chain_1662,blat.proc3825178.chain_1664	5
scaffold_15	ends_in_intron	6956967	6956967	-	asmbl_14274	none	STRG.18300.3	1	STRG.18300.1,STRG.18300.2,blat.proc3825156.chain_3145,blat.proc3825156.chain_3146,blat.proc3825156.chain_3147	5
scaffold_18	alternate_exon	4158081	4158194	+	asmbl_20508	none	STRG.21221.2,blat.proc3825174.chain_2114	2	STRG.21221.1,blat.proc3825174.chain_2113	2
scaffold_4	spliced_intron	17907555	17907735	-	asmbl_43325	none	blat.proc3825150.chain_1543	1	STRG.5387.3,blat.proc3825150.chain_1544	2
scaffold_4	starts_in_intron	3230817	3230817	-	asmbl_42420	none	Trinity_GG_2357_c1_g2_i1	1	STRG.4248.2	1
scaffold_22	alternate_exon	5933014	5934187	+	asmbl_30073	none	STRG.24944.2,Trinity_GG_31104_c1_g1_i2,blat.proc3825176.chain_2048	3	STRG.24944.3	1
scaffold_6	spliced_intron	13573776	13573887	-	asmbl_48914,asmbl_48915,asmbl_48916,asmbl_48917	none	STRG.8098.2,STRG.8098.3,STRG.8098.4,Trinity_GG_4614_c2_g1_i3,Trinity_GG_4614_c2_g1_i4,blat.proc3825152.chain_538,blat.proc3825152.chain_539	7	STRG.8098.1,Trinity_GG_4614_c2_g1_i1,Trinity_GG_4614_c2_g1_i2,blat.proc3825152.chain_536,blat.proc3825152.chain_537	5
scaffold_10	retained_intron	379136	379266	-	asmbl_3950	none	Trinity_GG_6631_c0_g1_i5,blat.proc3825154.chain_460	2	STRG.11922.1,STRG.11922.2,STRG.11922.3,STRG.11922.4,Trinity_GG_6631_c0_g1_i1,blat.proc3825154.chain_456,blat.proc3825154.chain_461,blat.proc3825154.chain_462	8
scaffold_10	alt_acceptor	10283622	10283623	-	asmbl_4716	none	blat.proc3825154.chain_1348	1	blat.proc3825154.chain_1341	1
scaffold_8	retained_exon	3604302	3604458	+	asmbl_52780	none	STRG.9857.2,blat.proc3825168.chain_2403	2	STRG.9857.1,blat.proc3825168.chain_2404	2
scaffold_13	alt_acceptor	6990830	6990831	+	asmbl_11005	none	STRG.15985.2	1	STRG.15985.1,blat.proc3825172.chain_733	2
scaffold_23	alt_acceptor	330711	330712	-	asmbl_30584,asmbl_30585	none	STRG.25551.1,STRG.25551.3,blat.proc3825160.chain_2698,blat.proc3825160.chain_2699	4	STRG.25551.2	1
scaffold_22	starts_in_intron	11040532	11040532	+	asmbl_30370	none	Trinity_GG_31364_c0_g1_i4,blat.proc3825176.chain_2450	2	STRG.25440.1,blat.proc3825176.chain_2449	2
scaffold_27	spliced_intron	2824529	2824739	-	asmbl_36860,asmbl_36863	none	STRG.28765.1,blat.proc3825162.chain_2011,blat.proc3825162.chain_2013	3	blat.proc3825162.chain_2012	1
scaffold_7	skipped_exon	7184630	7186249	+	asmbl_49902	none	STRG.8975.2,blat.proc3825168.chain_1480	2	STRG.8975.1,STRG.8975.3,blat.proc3825168.chain_1482	3
scaffold_3	alt_donor	7291003	7291004	-	asmbl_38962	none	STRG.3330.3,blat.proc3825148.chain_3215	2	STRG.3330.1,STRG.3330.2,blat.proc3825148.chain_3216	3
scaffold_8	starts_in_intron	3513931	3513931	-	asmbl_51738	none	Trinity_GG_5492_c0_g1_i1	1	STRG.9848.2	1
scaffold_1	spliced_intron	12334369	12334524	-	asmbl_705	none	blat.proc3825148.chain_829	1	STRG.849.2,Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_831,blat.proc3825148.chain_837	4
scaffold_21	spliced_intron	3015237	3015391	+	asmbl_28434	none	STRG.23928.1,blat.proc3825176.chain_1106	2	blat.proc3825176.chain_1104	1
scaffold_9	alternate_exon	571249	571526	+	asmbl_53772	none	STRG.10788.3,Trinity_GG_23309_c2_g1_i1	2	STRG.10788.2	1
scaffold_2	alt_donor	2995509	2995510	-	asmbl_22950,asmbl_22952	none	STRG.1746.1,STRG.1746.2	2	STRG.1746.3	1
scaffold_10	starts_in_intron	5750529	5750529	-	asmbl_4381	none	blat.proc3825154.chain_947	1	STRG.12408.1,STRG.12408.2,blat.proc3825154.chain_946	3
scaffold_2	alternate_exon	4556374	4557369	-	asmbl_23082	none	STRG.1881.1,Trinity_GG_1045_c0_g1_i1,blat.proc3825148.chain_1853	3	STRG.1881.2	1
scaffold_19	spliced_intron	12207952	12208221	+	asmbl_21762	none	STRG.22551.1,Trinity_GG_29759_c0_g1_i1,blat.proc3825174.chain_3521	3	STRG.22551.2,Trinity_GG_29759_c0_g1_i2,Trinity_GG_29759_c0_g1_i3,blat.proc3825174.chain_3519,blat.proc3825174.chain_3522	5
scaffold_3	retained_intron	17144430	17144593	+	asmbl_40654	none	STRG.3958.3,Trinity_GG_19534_c0_g1_i5,blat.proc3825166.chain_457	3	STRG.3958.1,STRG.3958.2,STRG.3958.4,blat.proc3825166.chain_458,blat.proc3825166.chain_459,blat.proc3825166.chain_460	6
scaffold_18	retained_intron	6859375	6859476	+	asmbl_20686	none	STRG.21391.1,blat.proc3825174.chain_2398	2	STRG.21391.2,blat.proc3825174.chain_2397	2
scaffold_13	retained_intron	3430642	3430833	+	asmbl_10689,asmbl_10690,asmbl_10692	none	STRG.15654.1,STRG.15654.2,Trinity_GG_25887_c0_g1_i1,Trinity_GG_25887_c0_g1_i4,Trinity_GG_25887_c0_g1_i5,blat.proc3825172.chain_351,blat.proc3825172.chain_353,blat.proc3825172.chain_354	8	Trinity_GG_25887_c0_g1_i3,blat.proc3825172.chain_352	2
scaffold_6	retained_exon	17645345	17645565	-	asmbl_49195	none	STRG.8458.2	1	STRG.8458.1	1
scaffold_6	alt_donor	1751446	1751447	-	asmbl_48115,asmbl_48117,asmbl_48119,asmbl_48120	none	STRG.7232.1,STRG.7232.4,STRG.7232.5,blat.proc3825150.chain_3311,blat.proc3825150.chain_3312,blat.proc3825150.chain_3315	6	STRG.7232.3,blat.proc3825150.chain_3309	2
scaffold_12	alt_acceptor	16524473	16524474	-	asmbl_9128	none	STRG.15414.1,Trinity_GG_8632_c0_g1_i2,blat.proc3825156.chain_237	3	STRG.15414.2,STRG.15414.3	2
scaffold_8	alt_donor	8269538	8269539	-	asmbl_51948,asmbl_51949	none	STRG.10106.1,Trinity_GG_5646_c0_g1_i1,blat.proc3825152.chain_2383,blat.proc3825152.chain_2384	4	STRG.10106.2,blat.proc3825152.chain_2381	2
scaffold_15	starts_in_intron	8791247	8791247	+	asmbl_15353	none	blat.proc3825172.chain_3068	1	STRG.18422.1,STRG.18422.2,blat.proc3825172.chain_3069	3
scaffold_9	alt_acceptor	11163	11164	-	asmbl_54792	none	STRG.10758.1,Trinity_GG_5989_c0_g1_i1,blat.proc3825152.chain_3051	3	STRG.10758.2	1
scaffold_12	ends_in_intron	13042452	13042452	-	asmbl_8909	none	Trinity_GG_8489_c0_g1_i1,blat.proc3825154.chain_3699	2	STRG.15192.1,blat.proc3825154.chain_3700	2
scaffold_2	alt_donor	13077787	13077788	-	asmbl_23492,asmbl_23493,asmbl_23494,asmbl_23495	none	STRG.2337.1,STRG.2337.4,blat.proc3825148.chain_2340,blat.proc3825148.chain_2345	4	STRG.2337.2,STRG.2337.3,STRG.2337.5,blat.proc3825148.chain_2341,blat.proc3825148.chain_2342,blat.proc3825148.chain_2343	6
scaffold_11	starts_in_intron	6394097	6394097	-	asmbl_6709	none	Trinity_GG_7653_c0_g1_i1,blat.proc3825154.chain_2240	2	STRG.13697.1,STRG.13697.2,STRG.13697.3,STRG.13697.4,Trinity_GG_7653_c0_g1_i2,Trinity_GG_7653_c0_g1_i3,blat.proc3825154.chain_2241,blat.proc3825154.chain_2242	8
scaffold_27	alternate_exon	5924579	5927022	-	asmbl_37041	none	STRG.29001.2,blat.proc3825162.chain_2240	2	blat.proc3825162.chain_2239	1
scaffold_17	retained_intron	3141752	3141861	-	asmbl_17802,asmbl_17803	none	STRG.20097.2,Trinity_GG_11267_c0_g1_i3	2	STRG.20097.1,blat.proc3825158.chain_1116	2
scaffold_15	spliced_intron	13325950	13326951	+	asmbl_15626,asmbl_15629	none	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,blat.proc3825172.chain_3386	3	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3385,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	11
scaffold_5	alternate_exon	6016007	6017904	-	asmbl_44077,asmbl_44079	none	STRG.6019.1,Trinity_GG_3358_c1_g1_i4,blat.proc3825150.chain_2168,blat.proc3825150.chain_2170	4	STRG.6019.3	1
scaffold_8	retained_intron	6160729	6160833	-	asmbl_51865,asmbl_51866,asmbl_51870	none	STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2272	3	STRG.10030.1,STRG.10030.3,blat.proc3825152.chain_2271,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	7
scaffold_27	retained_intron	2824529	2824739	-	asmbl_36862	none	blat.proc3825162.chain_2012	1	STRG.28765.1,blat.proc3825162.chain_2011,blat.proc3825162.chain_2013	3
scaffold_8	retained_intron	11272951	11273303	+	asmbl_53213	none	STRG.10346.2	1	STRG.10346.3,Trinity_GG_23069_c0_g1_i2,blat.proc3825168.chain_2914	3
scaffold_4	retained_intron	4104440	4104704	+	asmbl_41230,asmbl_41231	none	STRG.4316.1,Trinity_GG_19673_c0_g1_i6,blat.proc3825166.chain_696,blat.proc3825166.chain_697	4	STRG.4316.2	1
scaffold_2	spliced_intron	7134503	7134669	+	asmbl_24530	none	STRG.2046.3,blat.proc3825164.chain_2241	2	STRG.2046.2,blat.proc3825164.chain_2239	2
scaffold_17	retained_exon	9030965	9031033	-	asmbl_18141	none	STRG.20532.6	1	STRG.20532.3	1
scaffold_1	spliced_intron	14191116	14191205	-	asmbl_866,asmbl_872	none	STRG.1005.1,blat.proc3825148.chain_969,blat.proc3825148.chain_971	3	blat.proc3825148.chain_968	1
scaffold_28	alt_donor	2317726	2317727	+	asmbl_37360	none	STRG.29407.1,blat.proc3825178.chain_2597	2	STRG.29407.2,blat.proc3825178.chain_2596	2
scaffold_2	skipped_exon	1595420	1595710	+	asmbl_24212	none	STRG.1627.4	1	STRG.1627.1,STRG.1627.2,STRG.1627.3,blat.proc3825164.chain_1823	4
scaffold_18	retained_intron	7943323	7944083	-	asmbl_19986	none	Trinity_GG_12022_c0_g1_i2,blat.proc3825158.chain_2408	2	STRG.21493.3	1
scaffold_13	retained_intron	7935394	7935495	-	asmbl_9919	none	STRG.16070.4	1	STRG.16070.1,STRG.16070.2,STRG.16070.3,blat.proc3825156.chain_874,blat.proc3825156.chain_875,blat.proc3825156.chain_876,blat.proc3825156.chain_877,blat.proc3825156.chain_878	8
scaffold_1	alt_acceptor	9171405	9171406	-	asmbl_519	none	STRG.613.1,Trinity_GG_294_c0_g1_i1,blat.proc3825148.chain_532	3	STRG.613.2	1
scaffold_7	ends_in_intron	15599872	15599872	+	asmbl_50451	none	blat.proc3825168.chain_2059	1	blat.proc3825168.chain_2058,blat.proc3825168.chain_2060	2
scaffold_2	retained_intron	16414525	16414765	-	asmbl_23689	none	blat.proc3825148.chain_2557	1	STRG.2587.1,STRG.2587.2,STRG.2587.3,blat.proc3825148.chain_2556,blat.proc3825148.chain_2558,blat.proc3825148.chain_2559	6
scaffold_27	spliced_intron	128244	128281	-	asmbl_36635,asmbl_36636	none	STRG.28543.2,Trinity_GG_15985_c0_g1_i5,Trinity_GG_15985_c0_g1_i6,blat.proc3825162.chain_1801,blat.proc3825162.chain_1802	5	STRG.28543.3	1
scaffold_2	alt_acceptor	6510601	6510602	-	asmbl_23206,asmbl_23211	none	STRG.2013.1,STRG.2013.3,blat.proc3825148.chain_2016	3	STRG.2013.2,blat.proc3825148.chain_2017	2
scaffold_17	spliced_intron	3989814	3990042	-	asmbl_17836,asmbl_17837	none	STRG.20158.2,STRG.20158.3,blat.proc3825158.chain_1211	3	STRG.20158.4	1
scaffold_10	retained_intron	3758123	3758321	-	asmbl_4219,asmbl_4220	none	STRG.12208.1,STRG.12208.3	2	STRG.12208.2	1
scaffold_12	starts_in_intron	10165914	10165914	-	asmbl_8730	none	blat.proc3825154.chain_3508	1	STRG.14987.1,blat.proc3825154.chain_3509	2
scaffold_2	spliced_intron	899038	899115	+	asmbl_24147,asmbl_24149,asmbl_24150	none	STRG.1569.1,STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721,blat.proc3825164.chain_1722	6	STRG.1569.2,Trinity_GG_18211_c0_g1_i4,Trinity_GG_18211_c0_g1_i5,blat.proc3825164.chain_1718	4
scaffold_10	spliced_intron	785465	785549	+	asmbl_2867	none	STRG.11971.8	1	STRG.11971.7,Trinity_GG_23932_c1_g1_i5,blat.proc3825170.chain_657,blat.proc3825170.chain_658	4
scaffold_23	alt_donor	1673574	1673575	-	asmbl_30670	none	STRG.25646.2	1	STRG.25646.1,blat.proc3825160.chain_2818	2
scaffold_24	skipped_exon	6846851	6848069	-	asmbl_32989	none	STRG.26737.1,blat.proc3825162.chain_105	2	STRG.26737.2,blat.proc3825162.chain_106	2
scaffold_23	retained_intron	7701820	7701972	+	asmbl_31724,asmbl_31725	none	STRG.26086.1,STRG.26086.3	2	STRG.26086.2	1
scaffold_15	starts_in_intron	7153303	7153303	+	asmbl_15274	none	Trinity_GG_27355_c0_g1_i3,blat.proc3825172.chain_2986	2	STRG.18306.1,Trinity_GG_27355_c0_g1_i1,blat.proc3825172.chain_2984	3
scaffold_14	starts_in_intron	12162824	12162824	+	asmbl_12420	none	blat.proc3825172.chain_2292	1	STRG.17552.1	1
scaffold_18	alternate_exon	3028478	3031960	-	asmbl_19742	none	STRG.21147.1,blat.proc3825158.chain_2116,blat.proc3825158.chain_2117	3	STRG.21147.2	1
scaffold_5	skipped_exon	8670847	8673324	+	asmbl_45561	none	STRG.6204.1,blat.proc3825166.chain_2325	2	STRG.6204.2,blat.proc3825166.chain_2324	2
scaffold_3	spliced_intron	13160942	13161070	+	asmbl_40423,asmbl_40427	none	STRG.3681.1,STRG.3681.2,blat.proc3825166.chain_136	3	blat.proc3825166.chain_135	1
scaffold_3	alternate_exon	6077192	6077494	-	asmbl_38900	none	blat.proc3825148.chain_3127	1	STRG.3258.1,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131	3
scaffold_13	spliced_intron	4602269	4602712	-	asmbl_9647	none	Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665	2	STRG.15796.3,Trinity_GG_8874_c0_g1_i1,blat.proc3825156.chain_662,blat.proc3825156.chain_667,blat.proc3825156.chain_670	5
scaffold_6	alt_acceptor	9138667	9138668	+	asmbl_47208,asmbl_47209,asmbl_47212,asmbl_47213,asmbl_47215,asmbl_47216,asmbl_47217,asmbl_47218,asmbl_47219,asmbl_47220,asmbl_47221	none	STRG.7790.1,STRG.7790.2,STRG.7790.3,STRG.7790.4,STRG.7790.5,blat.proc3825168.chain_210,blat.proc3825168.chain_211,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_217,blat.proc3825168.chain_218,blat.proc3825168.chain_219	12	blat.proc3825168.chain_213,blat.proc3825168.chain_216	2
scaffold_15	retained_intron	2822581	2822636	-	asmbl_14052	none	Trinity_GG_10175_c0_g1_i1	1	STRG.18075.1,STRG.18075.2	2
scaffold_19	alt_acceptor	5137303	5137304	+	asmbl_21352	none	STRG.22079.2,blat.proc3825174.chain_3016	2	STRG.22079.1,blat.proc3825174.chain_3015	2
scaffold_12	skipped_exon	4952039	4953568	-	asmbl_8468,asmbl_8469	none	STRG.14666.2,blat.proc3825154.chain_3104	2	STRG.14666.1,blat.proc3825154.chain_3103	2
scaffold_3	starts_in_intron	5775864	5775864	-	asmbl_38860,asmbl_38864	none	STRG.3244.1,blat.proc3825148.chain_3040	2	STRG.3244.2,STRG.3244.3,STRG.3244.4,blat.proc3825148.chain_3038,blat.proc3825148.chain_3041,blat.proc3825148.chain_3042	6
scaffold_27	alternate_exon	3128529	3128985	+	asmbl_36188,asmbl_36191	none	STRG.28805.3,blat.proc3825178.chain_1837	2	Trinity_GG_33197_c0_g1_i2,Trinity_GG_33197_c0_g1_i3,blat.proc3825178.chain_1838,blat.proc3825178.chain_1839	4
scaffold_9	starts_in_intron	16657985	16657985	-	asmbl_55605	none	blat.proc3825154.chain_281	1	STRG.11813.1,blat.proc3825154.chain_279,blat.proc3825154.chain_280	3
scaffold_14	retained_intron	2895797	2895880	+	asmbl_11891	none	Trinity_GG_26594_c0_g1_i1,blat.proc3825172.chain_1651	2	STRG.16885.1,blat.proc3825172.chain_1650	2
scaffold_10	alt_acceptor	14700030	14700031	+	asmbl_3655,asmbl_3657,asmbl_3658	none	STRG.13024.1,blat.proc3825170.chain_1624,blat.proc3825170.chain_1627,blat.proc3825170.chain_1628	4	STRG.13024.2,blat.proc3825170.chain_1625,blat.proc3825170.chain_1626	3
scaffold_18	spliced_intron	1901421	1904370	-	asmbl_19655,asmbl_19656,asmbl_19658,asmbl_19660,asmbl_19663	none	STRG.21081.3,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	6	STRG.21081.10,Trinity_GG_11794_c2_g1_i1,blat.proc3825158.chain_2020,blat.proc3825158.chain_2022	4
scaffold_22	spliced_intron	224610	224758	-	asmbl_29075,asmbl_29076,asmbl_29078,asmbl_29081,asmbl_29082	none	STRG.24683.1,STRG.24683.3,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1905,blat.proc3825160.chain_1908	6	STRG.24683.2,blat.proc3825160.chain_1904,blat.proc3825160.chain_1907	3
scaffold_14	starts_in_intron	2471783	2471783	-	asmbl_12957	none	blat.proc3825156.chain_1702	1	STRG.16857.1,blat.proc3825156.chain_1703	2
scaffold_11	starts_in_intron	2812496	2812496	-	asmbl_6515	none	Trinity_GG_17285_c0_g1_i1	1	STRG.13406.1,blat.proc3825154.chain_2006	2
scaffold_1	skipped_exon	12448352	12449057	+	asmbl_2219	none	STRG.859.3,Trinity_GG_17840_c0_g1_i6,blat.proc3825164.chain_1029	3	STRG.859.1,STRG.859.2,Trinity_GG_17840_c0_g1_i1,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1028,blat.proc3825164.chain_1030	6
scaffold_25	spliced_intron	5827048	5828229	-	asmbl_34293,asmbl_34294	none	blat.proc3825162.chain_879,blat.proc3825162.chain_880	2	blat.proc3825162.chain_874	1
scaffold_7	retained_intron	3957526	3957766	-	asmbl_50841	none	Trinity_GG_5022_c1_g1_i1,blat.proc3825152.chain_1272	2	STRG.8789.2	1
scaffold_18	retained_intron	377007	377116	-	asmbl_19584	none	blat.proc3825158.chain_1990	1	STRG.20990.1,blat.proc3825158.chain_1986,blat.proc3825158.chain_1989	3
scaffold_15	retained_intron	389347	389455	+	asmbl_14972,asmbl_14973	none	blat.proc3825172.chain_2620,blat.proc3825172.chain_2621	2	STRG.17895.1,STRG.17895.2,blat.proc3825172.chain_2619,blat.proc3825172.chain_2622,blat.proc3825172.chain_2623,blat.proc3825172.chain_2625	6
scaffold_24	alternate_exon	3348122	3348243	-	asmbl_32822	none	STRG.26535.3	1	STRG.26535.2,STRG.26535.4,blat.proc3825160.chain_3647	3
scaffold_24	skipped_exon	4284868	4285198	-	asmbl_32866	none	STRG.26588.1,blat.proc3825160.chain_3666	2	STRG.26588.2	1
scaffold_14	starts_in_intron	13602917	13602917	-	asmbl_13650	none	blat.proc3825156.chain_2500	1	STRG.17649.1,blat.proc3825156.chain_2499	2
scaffold_10	retained_intron	8901030	8901211	-	asmbl_4635	none	STRG.12638.2	1	STRG.12638.1	1
scaffold_21	alternate_exon	3732922	3733404	-	asmbl_27527	none	STRG.23962.1,blat.proc3825160.chain_1091	2	STRG.23962.2,blat.proc3825160.chain_1089	2
scaffold_7	starts_in_intron	13199700	13199700	-	asmbl_51300	none	blat.proc3825152.chain_1788	1	STRG.9431.1,blat.proc3825152.chain_1782,blat.proc3825152.chain_1783,blat.proc3825152.chain_1785,blat.proc3825152.chain_1787,blat.proc3825152.chain_1789	6
scaffold_11	starts_in_intron	8078366	8078366	-	asmbl_6829	none	Trinity_GG_7709_c0_g1_i2,blat.proc3825154.chain_2334	2	STRG.13815.1,STRG.13815.2,STRG.13815.3,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i5,Trinity_GG_7709_c0_g1_i6,Trinity_GG_7709_c0_g1_i8,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2326,blat.proc3825154.chain_2328,blat.proc3825154.chain_2329,blat.proc3825154.chain_2330,blat.proc3825154.chain_2331,blat.proc3825154.chain_2332,blat.proc3825154.chain_2333	19
scaffold_7	alt_donor	10340314	10340315	-	asmbl_51118,asmbl_51121	none	STRG.9215.1,STRG.9215.3,Trinity_GG_5194_c0_g1_i1,blat.proc3825152.chain_1576	4	STRG.9215.2	1
scaffold_26	starts_in_intron	9514230	9514230	+	asmbl_35239	none	blat.proc3825178.chain_1625	1	STRG.28502.1,blat.proc3825178.chain_1624	2
scaffold_13	retained_intron	3747652	3747803	+	asmbl_10742	none	Trinity_GG_25936_c0_g1_i4,blat.proc3825172.chain_435	2	STRG.15702.1,STRG.15702.2,Trinity_GG_25936_c0_g1_i1,blat.proc3825172.chain_434	4
scaffold_21	spliced_intron	11103380	11103507	-	asmbl_28092	none	STRG.24581.2	1	STRG.24581.1,Trinity_GG_13762_c0_g1_i2,blat.proc3825160.chain_1813,blat.proc3825160.chain_1814	4
scaffold_18	spliced_intron	5787953	5788078	+	asmbl_20602	none	STRG.21328.1	1	blat.proc3825174.chain_2310,blat.proc3825174.chain_2311,blat.proc3825174.chain_2312	3
scaffold_4	retained_intron	19354316	19354420	-	asmbl_43437,asmbl_43439,asmbl_43440	none	STRG.5523.2,Trinity_GG_3086_c0_g1_i9,blat.proc3825150.chain_1681	3	STRG.5523.1,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	5
scaffold_20	retained_intron	5886547	5886628	-	asmbl_25783	none	Trinity_GG_12935_c0_g1_i1,blat.proc3825160.chain_265	2	STRG.23194.1,blat.proc3825160.chain_266	2
scaffold_12	alternate_exon	11328669	11328759	-	asmbl_8797	none	STRG.15071.2	1	STRG.15071.1	1
scaffold_24	skipped_exon	9080067	9082772	+	asmbl_32489,asmbl_32490,asmbl_32494	none	STRG.26950.1,STRG.26950.3,Trinity_GG_32214_c0_g1_i6,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_147,blat.proc3825178.chain_148,blat.proc3825178.chain_151	7	STRG.26950.2,Trinity_GG_32214_c0_g1_i4,blat.proc3825178.chain_146,blat.proc3825178.chain_150	4
scaffold_7	alternate_exon	2481591	2484085	+	asmbl_49647,asmbl_49650	none	blat.proc3825168.chain_1193,blat.proc3825168.chain_1196	2	blat.proc3825168.chain_1195	1
scaffold_2	retained_intron	8787993	8788059	-	asmbl_23334	none	STRG.2129.1,Trinity_GG_1179_c0_g1_i3,blat.proc3825148.chain_2144,blat.proc3825148.chain_2145	4	STRG.2129.2,blat.proc3825148.chain_2143	2
scaffold_20	alternate_exon	1950947	1952219	-	asmbl_25624	none	STRG.22935.1	1	STRG.22935.2	1
scaffold_20	alt_acceptor	2448274	2448275	+	asmbl_26494	none	STRG.22984.2	1	STRG.22984.1,blat.proc3825176.chain_160	2
scaffold_3	retained_intron	3268072	3268486	-	asmbl_38764	none	blat.proc3825148.chain_2950	1	STRG.3073.1,STRG.3073.2,STRG.3073.3,blat.proc3825148.chain_2953,blat.proc3825148.chain_2954	5
scaffold_18	starts_in_intron	1876239	1876239	+	asmbl_20389,asmbl_20391	none	STRG.21076.2,STRG.21076.3,blat.proc3825174.chain_1963	3	STRG.21076.1	1
scaffold_13	retained_exon	5599202	5599305	-	asmbl_9701	none	STRG.15869.1	1	STRG.15869.2	1
scaffold_19	alternate_exon	3175240	3175313	-	asmbl_22086	none	STRG.22001.2,blat.proc3825158.chain_2836	2	STRG.22001.1,Trinity_GG_12272_c0_g1_i1	2
scaffold_1	retained_intron	10763493	10763516	-	asmbl_597	none	STRG.701.1,Trinity_GG_350_c1_g1_i1,blat.proc3825148.chain_649	3	STRG.701.2	1
scaffold_21	alt_acceptor	10868410	10868411	-	asmbl_28083	none	STRG.24561.2	1	STRG.24561.1,blat.proc3825160.chain_1796	2
scaffold_6	alt_acceptor	17835561	17835562	-	asmbl_49205	none	STRG.8473.2	1	STRG.8473.1,blat.proc3825152.chain_856	2
scaffold_5	retained_intron	9085614	9085705	+	asmbl_45602	none	blat.proc3825166.chain_2474	1	STRG.6247.1,STRG.6247.2,Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2475,blat.proc3825166.chain_2476,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2480,blat.proc3825166.chain_2481	9
scaffold_1	retained_intron	4567214	4567837	-	asmbl_201,asmbl_205	none	STRG.285.4,Trinity_GG_95_c0_g1_i1,blat.proc3825148.chain_156	3	STRG.285.3	1
scaffold_1	starts_in_intron	14965886	14965886	+	asmbl_2417	none	Trinity_GG_17915_c0_g1_i1,blat.proc3825164.chain_1157	2	STRG.1073.1,STRG.1073.2,blat.proc3825164.chain_1156	3
scaffold_7	alt_acceptor	18580185	18580186	+	asmbl_50528	none	STRG.9672.2	1	STRG.9672.1,blat.proc3825168.chain_2185	2
scaffold_15	alternate_exon	14752806	14757419	-	asmbl_14745	none	STRG.18894.1,blat.proc3825158.chain_10	2	STRG.18894.2,blat.proc3825158.chain_11	2
scaffold_8	ends_in_intron	16241736	16241736	-	asmbl_52377	none	Trinity_GG_5879_c0_g1_i3,blat.proc3825152.chain_2810	2	STRG.10612.1,blat.proc3825152.chain_2809	2
scaffold_15	spliced_intron	12742614	12743313	+	asmbl_15600	none	STRG.18732.2,blat.proc3825172.chain_3379	2	blat.proc3825172.chain_3377	1
scaffold_27	alternate_exon	9098172	9098350	+	asmbl_36502	none	STRG.29163.2	1	blat.proc3825178.chain_2363,blat.proc3825178.chain_2365	2
scaffold_9	alternate_exon	6438873	6438944	-	asmbl_55062	none	STRG.11181.2	1	STRG.11181.1,STRG.11181.3,blat.proc3825152.chain_3331,blat.proc3825152.chain_3333	4
scaffold_2	alternate_exon	862237	862313	+	asmbl_24116	none	STRG.1562.3	1	STRG.1562.1,STRG.1562.2,blat.proc3825164.chain_1700,blat.proc3825164.chain_1703	4
scaffold_14	spliced_intron	15753825	15753858	-	asmbl_13748	none	STRG.17814.2	1	STRG.17814.1,Trinity_GG_10009_c0_g1_i1,blat.proc3825156.chain_2626	3
scaffold_14	alt_donor	10019061	10019062	-	asmbl_13407	none	STRG.17375.3,blat.proc3825156.chain_2151	2	STRG.17375.4,blat.proc3825156.chain_2153	2
scaffold_1	retained_exon	6496783	6496819	-	asmbl_365	none	blat.proc3825148.chain_353	1	STRG.449.2	1
scaffold_2	spliced_intron	10658018	10658230	-	asmbl_23436	none	STRG.2229.1,blat.proc3825148.chain_2280	2	blat.proc3825148.chain_2279	1
scaffold_9	alt_acceptor	9707759	9707760	+	asmbl_54231,asmbl_54235,asmbl_54239	none	STRG.11349.1,Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_140,blat.proc3825170.chain_144,blat.proc3825170.chain_146	5	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_139,blat.proc3825170.chain_142	4
scaffold_21	retained_exon	402606	403222	-	asmbl_27304	none	STRG.23733.1,Trinity_GG_13226_c0_g1_i1,blat.proc3825160.chain_853	3	STRG.23733.2	1
scaffold_2	alt_acceptor	7119254	7119255	+	asmbl_24527	none	STRG.2045.1,Trinity_GG_18474_c0_g1_i1,blat.proc3825164.chain_2213	3	STRG.2045.2,STRG.2045.3,Trinity_GG_18474_c0_g1_i2,blat.proc3825164.chain_2214	4
scaffold_8	alternate_exon	11742081	11742574	-	asmbl_52163	none	Trinity_GG_5730_c0_g2_i1,blat.proc3825152.chain_2545	2	STRG.10376.1,blat.proc3825152.chain_2544	2
scaffold_11	alternate_exon	11099221	11099266	-	asmbl_7017	none	STRG.14077.2	1	STRG.14077.1	1
scaffold_15	alt_acceptor	9483593	9483594	-	asmbl_14381	none	STRG.18464.1	1	STRG.18464.2,Trinity_GG_10381_c0_g1_i1,blat.proc3825156.chain_3348	3
scaffold_1	starts_in_intron	11176902	11176902	+	asmbl_2088	none	blat.proc3825164.chain_906	1	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_908,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915	10
scaffold_16	skipped_exon	7277120	7278374	+	asmbl_16332	none	blat.proc3825174.chain_264	1	STRG.19393.1,blat.proc3825174.chain_263	2
scaffold_6	alt_acceptor	1751740	1751741	-	asmbl_48120	none	STRG.7232.4	1	STRG.7232.1,STRG.7232.3,STRG.7232.5,STRG.7232.6,STRG.7232.7,blat.proc3825150.chain_3308,blat.proc3825150.chain_3309,blat.proc3825150.chain_3311,blat.proc3825150.chain_3312,blat.proc3825150.chain_3314,blat.proc3825150.chain_3315	11
scaffold_13	starts_in_intron	7500523	7500523	-	asmbl_9883	none	Trinity_GG_9001_c1_g1_i1,blat.proc3825156.chain_910	2	STRG.16047.1,STRG.16047.2,STRG.16047.3,STRG.16047.4,blat.proc3825156.chain_899,blat.proc3825156.chain_900,blat.proc3825156.chain_901,blat.proc3825156.chain_902,blat.proc3825156.chain_903,blat.proc3825156.chain_904,blat.proc3825156.chain_905,blat.proc3825156.chain_906,blat.proc3825156.chain_908,blat.proc3825156.chain_909	14
scaffold_7	alt_acceptor	18360629	18360630	-	asmbl_51463,asmbl_51464	none	STRG.9667.1,STRG.9667.2	2	blat.proc3825152.chain_2024,blat.proc3825152.chain_2025	2
scaffold_6	starts_in_intron	69345	69345	+	asmbl_46628	none	STRG.7071.3,Trinity_GG_21212_c2_g1_i1	2	STRG.7071.2,blat.proc3825166.chain_3285	2
scaffold_28	retained_intron	3734861	3735230	-	asmbl_38170	none	blat.proc3825162.chain_2738	1	STRG.29587.3,blat.proc3825162.chain_2736	2
scaffold_19	alt_acceptor	3191573	3191574	+	asmbl_21306	none	STRG.22006.2	1	STRG.22006.1,Trinity_GG_29480_c0_g1_i2,blat.proc3825174.chain_3032	3
scaffold_17	spliced_intron	14110311	14110420	-	asmbl_18407,asmbl_18409	none	STRG.20898.1,blat.proc3825158.chain_1842,blat.proc3825158.chain_1843	3	blat.proc3825158.chain_1841	1
scaffold_12	retained_intron	16247233	16247319	+	asmbl_8156,asmbl_8157	none	STRG.15380.3,Trinity_GG_25754_c0_g1_i1,blat.proc3825172.chain_84	3	STRG.15380.1,Trinity_GG_25754_c0_g1_i2,blat.proc3825172.chain_85	3
scaffold_7	starts_in_intron	11246708	11246708	+	asmbl_50165	none	Trinity_GG_22459_c1_g1_i1,blat.proc3825168.chain_1779	2	STRG.9274.1	1
scaffold_5	alternate_exon	5739762	5741887	+	asmbl_45362	none	STRG.5992.3,Trinity_GG_20540_c0_g1_i1,blat.proc3825166.chain_2112,blat.proc3825166.chain_2133	4	STRG.5992.1,STRG.5992.2,blat.proc3825166.chain_2134	3
scaffold_22	starts_in_intron	7123087	7123087	+	asmbl_30154	none	STRG.25047.3,Trinity_GG_31177_c0_g1_i4,blat.proc3825176.chain_2176	3	STRG.25047.1,STRG.25047.2,Trinity_GG_31177_c0_g1_i3,Trinity_GG_31177_c0_g1_i6,blat.proc3825176.chain_2177,blat.proc3825176.chain_2179,blat.proc3825176.chain_2180,blat.proc3825176.chain_2181	8
scaffold_9	alt_acceptor	9736447	9736448	+	asmbl_54248	none	STRG.11353.1,blat.proc3825170.chain_200	2	STRG.11353.2,Trinity_GG_23656_c1_g1_i3,blat.proc3825170.chain_199	3
scaffold_24	alt_acceptor	10089351	10089352	+	asmbl_32540	none	blat.proc3825162.chain_331	1	STRG.26971.2	1
scaffold_23	ends_in_intron	6854401	6854401	-	asmbl_30988	none	blat.proc3825160.chain_3203	1	STRG.26018.2,STRG.26018.3	2
scaffold_11	starts_in_intron	4638457	4638457	+	asmbl_5492	none	blat.proc3825170.chain_2087	1	STRG.13546.1,blat.proc3825170.chain_2088	2
scaffold_10	retained_exon	1112659	1112772	+	asmbl_2902	none	STRG.11999.1,Trinity_GG_23979_c0_g1_i2,blat.proc3825170.chain_739	3	STRG.11999.2,Trinity_GG_23979_c0_g1_i1,blat.proc3825170.chain_738	3
scaffold_4	spliced_intron	13762275	13762795	-	asmbl_43003,asmbl_43004,asmbl_43005	none	STRG.4997.1,STRG.4997.2,blat.proc3825150.chain_1141,blat.proc3825150.chain_1143,blat.proc3825150.chain_1144	5	blat.proc3825150.chain_1142	1
scaffold_6	starts_in_intron	4973907	4973907	-	asmbl_48377	none	STRG.7471.1,blat.proc3825150.chain_3651	2	STRG.7471.2,blat.proc3825150.chain_3652	2
scaffold_2	retained_intron	18614248	18614705	-	asmbl_23808	none	blat.proc3825148.chain_2648	1	STRG.2737.1,blat.proc3825148.chain_2649	2
scaffold_20	ends_in_intron	80022	80022	+	asmbl_26341	none	Trinity_GG_29849_c1_g1_i2	1	STRG.22695.1	1
scaffold_24	spliced_intron	3026292	3026335	+	asmbl_32132	none	STRG.26523.2	1	STRG.26523.1	1
scaffold_6	ends_in_intron	16059781	16059781	-	asmbl_49101	none	Trinity_GG_4753_c0_g1_i4	1	STRG.8341.1,blat.proc3825152.chain_777	2
scaffold_6	spliced_intron	126870	126945	-	asmbl_48022,asmbl_48023	none	blat.proc3825150.chain_3188,blat.proc3825150.chain_3189	2	STRG.7076.1	1
scaffold_16	retained_intron	4095144	4095461	+	asmbl_16175,asmbl_16176	none	Trinity_GG_27809_c0_g1_i8,blat.proc3825174.chain_61	2	STRG.19226.1,STRG.19226.2	2
scaffold_19	alternate_exon	4792848	4793125	-	asmbl_22130	none	STRG.22056.3,blat.proc3825158.chain_2886	2	STRG.22056.1,blat.proc3825158.chain_2887	2
scaffold_5	starts_in_intron	1007004	1007004	-	asmbl_43811	none	Trinity_GG_3202_c1_g1_i4	1	STRG.5655.2	1
scaffold_6	starts_in_intron	8049669	8049669	+	asmbl_47095	none	blat.proc3825168.chain_115	1	STRG.7685.1,STRG.7685.2	2
scaffold_27	alt_acceptor	6782460	6782461	-	asmbl_37084	none	blat.proc3825162.chain_2277	1	STRG.29050.3,STRG.29050.4,blat.proc3825162.chain_2278,blat.proc3825162.chain_2280	4
scaffold_15	alt_acceptor	1988704	1988705	+	asmbl_15046	none	STRG.17988.2,blat.proc3825172.chain_2706	2	STRG.17988.1,blat.proc3825172.chain_2709	2
scaffold_12	skipped_exon	15212283	15213043	+	asmbl_8113	none	STRG.15322.3,Trinity_GG_25697_c0_g1_i4,blat.proc3825170.chain_3730	3	STRG.15322.1,STRG.15322.2,Trinity_GG_25697_c0_g1_i2,Trinity_GG_25697_c0_g1_i3,blat.proc3825170.chain_3727,blat.proc3825170.chain_3728	6
scaffold_8	retained_exon	14571072	14571162	+	asmbl_53382,asmbl_53383	none	STRG.10543.2,STRG.10543.3	2	STRG.10543.1,blat.proc3825168.chain_3106	2
scaffold_2	starts_in_intron	6543530	6543530	+	asmbl_24485	none	Trinity_GG_18446_c0_g1_i2,blat.proc3825164.chain_2137	2	STRG.2019.1,blat.proc3825164.chain_2138	2
scaffold_25	alt_donor	9551896	9551897	+	asmbl_33830,asmbl_33831	none	STRG.27772.1,blat.proc3825178.chain_811,blat.proc3825178.chain_814	3	STRG.27772.3	1
scaffold_1	retained_exon	45447	45506	-	asmbl_3	none	STRG.11.3	1	STRG.11.1,blat.proc3825148.chain_63,blat.proc3825148.chain_64	3
scaffold_13	alt_donor	8749188	8749189	+	asmbl_11148	none	STRG.16149.1,blat.proc3825172.chain_950	2	STRG.16149.2,blat.proc3825172.chain_949	2
scaffold_3	spliced_intron	17144430	17144593	+	asmbl_40655,asmbl_40656,asmbl_40657,asmbl_40658	none	STRG.3958.1,STRG.3958.2,STRG.3958.4,blat.proc3825166.chain_458,blat.proc3825166.chain_459,blat.proc3825166.chain_460	6	STRG.3958.3,Trinity_GG_19534_c0_g1_i5,blat.proc3825166.chain_457	3
scaffold_3	retained_intron	7917853	7917880	-	asmbl_39001,asmbl_39002	none	blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	2	STRG.3377.4	1
scaffold_21	starts_in_intron	10153064	10153064	-	asmbl_28011	none	blat.proc3825160.chain_1677	1	STRG.24481.1,blat.proc3825160.chain_1676	2
scaffold_1	alt_acceptor	18275989	18275990	+	asmbl_2545	none	STRG.1277.1,blat.proc3825164.chain_1413	2	STRG.1277.2	1
scaffold_7	retained_exon	17732526	17732588	+	asmbl_50492	none	STRG.9619.1,blat.proc3825168.chain_2074	2	blat.proc3825168.chain_2072	1
scaffold_15	alt_acceptor	15189524	15189525	+	asmbl_15729	none	blat.proc3825172.chain_3530	1	blat.proc3825172.chain_3535	1
scaffold_21	alt_donor	7290922	7290923	-	asmbl_27792	none	STRG.24252.1,blat.proc3825160.chain_1396	2	STRG.24252.2,STRG.24252.3,blat.proc3825160.chain_1398,blat.proc3825160.chain_1399	4
scaffold_16	spliced_intron	810150	810259	-	asmbl_16907	none	STRG.19064.2,blat.proc3825158.chain_128	2	blat.proc3825158.chain_129,blat.proc3825158.chain_131,blat.proc3825158.chain_132	3
scaffold_2	alternate_exon	16285039	16285130	+	asmbl_25109	none	STRG.2562.2,blat.proc3825164.chain_2841	2	STRG.2562.1,blat.proc3825164.chain_2842,blat.proc3825164.chain_2843	3
scaffold_6	retained_intron	2909054	2909178	+	asmbl_46788	none	Trinity_GG_21339_c0_g1_i4,blat.proc3825166.chain_3533	2	STRG.7298.2,Trinity_GG_21339_c0_g1_i1,Trinity_GG_21339_c0_g1_i9,blat.proc3825166.chain_3530,blat.proc3825166.chain_3531	5
scaffold_9	retained_intron	6284420	6284513	+	asmbl_54085	none	blat.proc3825168.chain_3712	1	STRG.11167.1,blat.proc3825168.chain_3713	2
scaffold_12	alt_acceptor	14055090	14055091	-	asmbl_8969	none	STRG.15228.2,Trinity_GG_8538_c0_g1_i1,blat.proc3825156.chain_29	3	STRG.15228.1,Trinity_GG_8538_c0_g1_i2,blat.proc3825156.chain_28	3
scaffold_17	spliced_intron	10037074	10037314	-	asmbl_18225	none	Trinity_GG_11583_c0_g1_i3,blat.proc3825158.chain_1619	2	Trinity_GG_11583_c0_g1_i2,blat.proc3825158.chain_1621	2
scaffold_7	alt_acceptor	41516	41517	+	asmbl_49534	none	STRG.8587.3	1	STRG.8587.1,STRG.8587.2	2
scaffold_1	alt_donor	11096238	11096239	+	asmbl_2059	none	Trinity_GG_17769_c0_g1_i4	1	STRG.726.2	1
scaffold_2	starts_in_intron	1762011	1762011	-	asmbl_22867	none	blat.proc3825148.chain_1592	1	STRG.1647.1,blat.proc3825148.chain_1593	2
scaffold_7	alt_donor	3957765	3957766	-	asmbl_50842	none	STRG.8789.2	1	STRG.8789.1,blat.proc3825152.chain_1271	2
scaffold_18	starts_in_intron	7241578	7241578	+	asmbl_20728	none	Trinity_GG_29105_c1_g1_i1,blat.proc3825174.chain_2382	2	STRG.21430.1,blat.proc3825174.chain_2380	2
scaffold_11	spliced_intron	4666941	4667075	+	asmbl_5495,asmbl_5496	none	blat.proc3825170.chain_2045,blat.proc3825170.chain_2046,blat.proc3825170.chain_2047	3	STRG.13563.2,Trinity_GG_24735_c0_g1_i3,blat.proc3825170.chain_2048	3
scaffold_4	retained_intron	19605273	19605368	-	asmbl_43472	none	STRG.5550.3	1	STRG.5550.4	1
scaffold_4	ends_in_intron	8630434	8630434	-	asmbl_42785	none	Trinity_GG_2617_c0_g1_i3,blat.proc3825150.chain_897	2	STRG.4683.1,blat.proc3825150.chain_896	2
scaffold_16	ends_in_intron	13212923	13212923	+	asmbl_16655	none	blat.proc3825174.chain_696	1	STRG.19781.1,STRG.19781.2,blat.proc3825174.chain_693,blat.proc3825174.chain_695	4
scaffold_25	retained_intron	9337633	9337746	+	asmbl_33810	none	blat.proc3825178.chain_880	1	blat.proc3825178.chain_877,blat.proc3825178.chain_882	2
scaffold_1	alternate_exon	8630865	8631688	-	asmbl_459	none	STRG.571.1,blat.proc3825148.chain_545	2	STRG.571.3,blat.proc3825148.chain_548	2
scaffold_14	ends_in_intron	9684126	9684126	+	asmbl_12297	none	blat.proc3825172.chain_2070	1	STRG.17355.1,blat.proc3825172.chain_2071	2
scaffold_21	starts_in_intron	8540249	8540249	-	asmbl_27931	none	blat.proc3825160.chain_1546	1	STRG.24387.2,STRG.24387.3,blat.proc3825160.chain_1547,blat.proc3825160.chain_1548,blat.proc3825160.chain_1549	5
scaffold_5	alternate_exon	16280732	16290085	+	asmbl_46076	none	STRG.6827.2,Trinity_GG_21030_c0_g1_i5,blat.proc3825166.chain_2982,blat.proc3825166.chain_3002	4	STRG.6827.3,Trinity_GG_21041_c0_g1_i1,blat.proc3825166.chain_3001	3
scaffold_5	spliced_intron	8748797	8748963	+	asmbl_45565,asmbl_45567,asmbl_45568,asmbl_45569	none	STRG.6210.2,Trinity_GG_20640_c0_g1_i4,Trinity_GG_20640_c0_g1_i5,blat.proc3825166.chain_2308,blat.proc3825166.chain_2309,blat.proc3825166.chain_2310,blat.proc3825166.chain_2312	7	STRG.6210.1,Trinity_GG_20640_c0_g1_i3,blat.proc3825166.chain_2311	3
scaffold_15	ends_in_intron	370842	370842	-	asmbl_13918	none	blat.proc3825156.chain_2708	1	STRG.17891.1,STRG.17891.2,blat.proc3825156.chain_2709,blat.proc3825156.chain_2710	4
scaffold_20	spliced_intron	11744401	11744588	-	asmbl_26193	none	STRG.23685.1,blat.proc3825160.chain_780	2	STRG.23685.2,Trinity_GG_13193_c0_g1_i2,blat.proc3825160.chain_781	3
scaffold_16	alt_acceptor	3979611	3979612	-	asmbl_17023	none	STRG.19215.1,blat.proc3825158.chain_345	2	STRG.19215.2,STRG.19215.3	2
scaffold_13	spliced_intron	3735854	3736052	+	asmbl_10730,asmbl_10731,asmbl_10732,asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737	none	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_445,blat.proc3825172.chain_446,blat.proc3825172.chain_448	12	blat.proc3825172.chain_449	1
scaffold_1	ends_in_intron	12913726	12913726	+	asmbl_2271	none	blat.proc3825164.chain_1115	1	STRG.922.1,blat.proc3825164.chain_1116,blat.proc3825164.chain_1118	3
scaffold_6	spliced_intron	2909228	2909325	+	asmbl_46785,asmbl_46789,asmbl_46790	none	STRG.7298.2,Trinity_GG_21339_c0_g1_i1,Trinity_GG_21339_c0_g1_i9,blat.proc3825166.chain_3530,blat.proc3825166.chain_3531	5	Trinity_GG_21339_c0_g1_i4,blat.proc3825166.chain_3533	2
scaffold_21	starts_in_intron	473298	473298	+	asmbl_28267	none	Trinity_GG_30441_c0_g1_i2,blat.proc3825176.chain_915	2	STRG.23742.1,Trinity_GG_30441_c0_g1_i5,blat.proc3825176.chain_916,blat.proc3825176.chain_917,blat.proc3825176.chain_918	5
scaffold_28	spliced_intron	5390808	5391042	+	asmbl_37583,asmbl_37588,asmbl_37589	none	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,blat.proc3825178.chain_2869,blat.proc3825178.chain_2870	5	STRG.29687.4,Trinity_GG_33768_c0_g1_i8,blat.proc3825178.chain_2867	3
scaffold_5	alt_donor	18220745	18220746	+	asmbl_46221,asmbl_46222	none	STRG.6959.4,STRG.6959.5	2	STRG.6959.1,STRG.6959.2,STRG.6959.3,blat.proc3825166.chain_3166,blat.proc3825166.chain_3167	5
scaffold_14	starts_in_intron	15232442	15232442	+	asmbl_12574	none	STRG.17749.3,Trinity_GG_27060_c1_g1_i1,blat.proc3825172.chain_2448	3	STRG.17749.2	1
scaffold_11	alt_acceptor	4715363	4715364	+	asmbl_5501,asmbl_5502	none	STRG.13556.2,STRG.13556.3	2	STRG.13556.1,blat.proc3825170.chain_2057	2
scaffold_6	ends_in_intron	1348915	1348915	-	asmbl_48099	none	Trinity_GG_4002_c1_g1_i1,blat.proc3825150.chain_3281	2	STRG.7183.3	1
scaffold_7	alt_donor	4915680	4915681	+	asmbl_49762	none	STRG.8836.3	1	STRG.8836.4	1
scaffold_18	starts_in_intron	7467024	7467024	+	asmbl_20742	none	Trinity_GG_29096_c0_g1_i1,blat.proc3825174.chain_2369	2	STRG.21441.1	1
scaffold_8	retained_intron	15734313	15734436	+	asmbl_53417	none	blat.proc3825168.chain_3120	1	STRG.10577.1,Trinity_GG_23193_c0_g1_i2,blat.proc3825168.chain_3118,blat.proc3825168.chain_3119	4
scaffold_5	alt_acceptor	7409170	7409171	-	asmbl_44174	none	STRG.6142.3	1	STRG.6142.1,STRG.6142.2	2
scaffold_2	skipped_exon	801491	802473	+	asmbl_24108	none	STRG.1557.1	1	Trinity_GG_18205_c1_g1_i1,blat.proc3825164.chain_1697,blat.proc3825164.chain_1698	3
scaffold_3	starts_in_intron	80168	80168	+	asmbl_39804	none	STRG.2890.3,Trinity_GG_18959_c3_g1_i1,blat.proc3825164.chain_3157	3	STRG.2890.1,Trinity_GG_18959_c0_g1_i1	2
scaffold_20	starts_in_intron	1105965	1105965	-	asmbl_25536	none	Trinity_GG_12735_c0_g1_i4	1	blat.proc3825158.chain_3675	1
scaffold_4	retained_intron	9254304	9254682	+	asmbl_41606	none	STRG.4719.2	1	STRG.4719.1,blat.proc3825166.chain_1128	2
scaffold_1	alternate_exon	2791620	2791745	+	asmbl_1557	none	blat.proc3825164.chain_236	1	STRG.181.1,STRG.181.2,blat.proc3825164.chain_237	3
scaffold_7	retained_intron	8508720	8510079	+	asmbl_50004,asmbl_50005,asmbl_50006	none	STRG.9078.2,blat.proc3825168.chain_1605,blat.proc3825168.chain_1609	3	STRG.9078.3,blat.proc3825168.chain_1607	2
scaffold_26	starts_in_intron	6023982	6023982	+	asmbl_35072	none	Trinity_GG_32969_c0_g1_i2,blat.proc3825178.chain_1414	2	STRG.28319.1,blat.proc3825178.chain_1413	2
scaffold_1	spliced_intron	14522266	14522424	-	asmbl_929,asmbl_931	none	STRG.1050.1,STRG.1050.3,blat.proc3825148.chain_1052,blat.proc3825148.chain_1053	4	Trinity_GG_552_c0_g1_i2,blat.proc3825148.chain_1054	2
scaffold_13	alt_acceptor	7319175	7319176	-	asmbl_9874	none	STRG.16033.2,Trinity_GG_9015_c0_g1_i2,blat.proc3825156.chain_931	3	STRG.16033.1,Trinity_GG_9015_c0_g1_i1,blat.proc3825156.chain_930	3
scaffold_24	skipped_exon	2430315	2431447	+	asmbl_32097	none	STRG.26465.2,blat.proc3825176.chain_3402	2	STRG.26465.1,blat.proc3825176.chain_3403	2
scaffold_10	skipped_exon	13285861	13288149	-	asmbl_4864,asmbl_4865,asmbl_4870	none	STRG.12922.2,STRG.12922.4,blat.proc3825154.chain_1545,blat.proc3825154.chain_1546	4	blat.proc3825154.chain_1547	1
scaffold_14	alternate_exon	5889816	5889893	-	asmbl_13098	none	STRG.17050.1	1	STRG.17050.2,blat.proc3825156.chain_1856	2
scaffold_9	skipped_exon	6148887	6150219	+	asmbl_54078	none	STRG.11159.1	1	STRG.11159.2	1
scaffold_11	starts_in_intron	6511304	6511304	-	asmbl_6715	none	STRG.13699.1,blat.proc3825154.chain_2196	2	STRG.13699.3,Trinity_GG_7623_c0_g1_i3,blat.proc3825154.chain_2195	3
scaffold_6	alternate_exon	878101	878146	+	asmbl_46683	none	STRG.7158.3	1	STRG.7158.1	1
scaffold_15	alternate_exon	15179203	15179284	+	asmbl_15732,asmbl_15734	none	blat.proc3825172.chain_3526,blat.proc3825172.chain_3527	2	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3519,blat.proc3825172.chain_3520,blat.proc3825172.chain_3521,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3525,blat.proc3825172.chain_3528,blat.proc3825172.chain_3529,blat.proc3825172.chain_3530,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535,blat.proc3825172.chain_3536	16
scaffold_5	alternate_exon	17194625	17194965	+	asmbl_46142	none	STRG.6891.2	1	STRG.6891.3,blat.proc3825166.chain_3059	2
scaffold_17	retained_intron	2721370	2721870	+	asmbl_18692	none	STRG.20072.3,Trinity_GG_28282_c0_g1_i1,blat.proc3825174.chain_905	3	STRG.20072.1,STRG.20072.2,Trinity_GG_28282_c0_g1_i2,blat.proc3825174.chain_904	4
scaffold_10	starts_in_intron	3286617	3286617	-	asmbl_4184	none	blat.proc3825154.chain_674	1	STRG.12153.1,blat.proc3825154.chain_673	2
scaffold_14	starts_in_intron	7508335	7508335	-	asmbl_13216,asmbl_13221	none	STRG.17196.2,STRG.17196.4,blat.proc3825156.chain_1997	3	STRG.17196.1,STRG.17196.3,blat.proc3825156.chain_1996,blat.proc3825156.chain_1998,blat.proc3825156.chain_1999,blat.proc3825156.chain_2000	6
scaffold_6	alt_donor	12241689	12241690	+	asmbl_47388	none	STRG.7990.1	1	STRG.7990.2	1
scaffold_17	spliced_intron	10050378	10050855	+	asmbl_19160,asmbl_19161	none	STRG.20618.2,STRG.20618.3,blat.proc3825174.chain_1497	3	STRG.20618.1,Trinity_GG_28608_c0_g1_i4,blat.proc3825174.chain_1499,blat.proc3825174.chain_1500	4
scaffold_7	alt_acceptor	2519479	2519480	+	asmbl_49654	none	blat.proc3825168.chain_1184	1	blat.proc3825168.chain_1185	1
scaffold_2	retained_intron	7816023	7816120	-	asmbl_23279	none	Trinity_GG_1148_c0_g1_i1,blat.proc3825148.chain_2088	2	STRG.2079.1,Trinity_GG_1148_c0_g1_i2,blat.proc3825148.chain_2086	3
scaffold_9	alternate_exon	12336068	12337233	-	asmbl_55372	none	STRG.11557.1	1	STRG.11557.2	1
scaffold_28	alt_acceptor	5391041	5391042	+	asmbl_37589	none	blat.proc3825178.chain_2870	1	Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868	2
scaffold_7	spliced_intron	9311355	9311554	+	asmbl_50074,asmbl_50076	none	STRG.9144.1,Trinity_GG_22395_c0_g1_i2,Trinity_GG_22395_c0_g1_i3,blat.proc3825168.chain_1670,blat.proc3825168.chain_1671	5	Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669	2
scaffold_12	starts_in_intron	2722102	2722102	+	asmbl_7520	none	blat.proc3825170.chain_3077	1	Trinity_GG_25344_c0_g1_i4,Trinity_GG_25344_c0_g1_i5,blat.proc3825170.chain_3075,blat.proc3825170.chain_3078	4
scaffold_13	starts_in_intron	11156317	11156317	-	asmbl_10071	none	blat.proc3825156.chain_1151	1	STRG.16278.1,blat.proc3825156.chain_1152	2
scaffold_6	spliced_intron	16104047	16104276	-	asmbl_49103	none	blat.proc3825152.chain_725	1	Trinity_GG_4723_c0_g1_i2	1
scaffold_23	alternate_exon	4097681	4101228	-	asmbl_30832	none	STRG.25826.1	1	blat.proc3825160.chain_3029	1
scaffold_22	spliced_intron	7454499	7454589	+	asmbl_30187	none	STRG.25081.1	1	Trinity_GG_31202_c0_g1_i2,blat.proc3825176.chain_2213	2
scaffold_10	spliced_intron	13279609	13280597	+	asmbl_3588	none	Trinity_GG_24437_c0_g1_i1,blat.proc3825170.chain_1536	2	Trinity_GG_24437_c0_g1_i2,blat.proc3825170.chain_1537	2
scaffold_3	alternate_exon	6245582	6245714	-	asmbl_38938	none	STRG.3271.1	1	STRG.3271.2,STRG.3271.4,STRG.3271.5,STRG.3271.6,blat.proc3825148.chain_3136,blat.proc3825148.chain_3138,blat.proc3825148.chain_3139,blat.proc3825148.chain_3140,blat.proc3825148.chain_3141,blat.proc3825148.chain_3143	10
scaffold_11	starts_in_intron	4675175	4675175	-	asmbl_6612	none	STRG.13564.3,blat.proc3825154.chain_2159	2	STRG.13564.1,STRG.13564.2,STRG.13564.4,STRG.13564.5,blat.proc3825154.chain_2155,blat.proc3825154.chain_2157,blat.proc3825154.chain_2158	7
scaffold_20	retained_intron	253640	253915	-	asmbl_25479	none	STRG.22719.1	1	STRG.22719.3	1
scaffold_17	skipped_exon	607337	608734	-	asmbl_17632	none	STRG.19912.3	1	STRG.19912.1,STRG.19912.2,STRG.19912.4	3
scaffold_17	retained_exon	12116137	12116225	+	asmbl_19261	none	STRG.20740.2,blat.proc3825174.chain_1621	2	STRG.20740.3,blat.proc3825174.chain_1622	2
scaffold_8	retained_exon	16656666	16656851	+	asmbl_53464	none	STRG.10639.2,blat.proc3825168.chain_3201	2	STRG.10639.1,blat.proc3825168.chain_3202	2
scaffold_22	starts_in_intron	4579096	4579096	+	asmbl_30025,asmbl_30026	none	Trinity_GG_31072_c0_g1_i4,blat.proc3825176.chain_2001,blat.proc3825176.chain_2002	3	STRG.24887.1,STRG.24887.2,STRG.24887.3,blat.proc3825176.chain_2003,blat.proc3825176.chain_2004,blat.proc3825176.chain_2005	6
scaffold_3	skipped_exon	13833535	13836456	+	asmbl_40464	none	Trinity_GG_19394_c0_g1_i6,blat.proc3825166.chain_209	2	Trinity_GG_19394_c0_g1_i4,blat.proc3825166.chain_206	2
scaffold_12	skipped_exon	14882369	14882672	+	asmbl_8094	none	STRG.15273.3	1	STRG.15273.1,STRG.15273.2,blat.proc3825170.chain_3713	3
scaffold_16	alternate_exon	11335563	11336789	+	asmbl_16576,asmbl_16578	none	STRG.19664.3,STRG.19664.4,blat.proc3825152.chain_406,blat.proc3825174.chain_603,blat.proc3825174.chain_605	5	STRG.19664.1,blat.proc3825174.chain_604,blat.proc3825174.chain_606	3
scaffold_14	retained_exon	12807676	12807719	-	asmbl_13608	none	STRG.17589.2	1	STRG.17589.1,blat.proc3825156.chain_2415	2
scaffold_11	starts_in_intron	8085413	8085413	+	asmbl_5718	none	Trinity_GG_24933_c0_g1_i2,blat.proc3825170.chain_2373	2	STRG.13818.1	1
scaffold_25	skipped_exon	6769681	6771338	+	asmbl_33647	none	STRG.27542.1	1	STRG.27542.2	1
scaffold_13	retained_intron	381828	381913	-	asmbl_9324,asmbl_9325	none	STRG.15437.2,blat.proc3825156.chain_261	2	STRG.15437.4,blat.proc3825156.chain_262	2
scaffold_3	alternate_exon	19403530	19403916	-	asmbl_39652	none	STRG.4086.3	1	STRG.4086.1,STRG.4086.2,blat.proc3825150.chain_250,blat.proc3825150.chain_251,blat.proc3825150.chain_252	5
scaffold_10	alt_acceptor	8897219	8897220	-	asmbl_4622,asmbl_4625,asmbl_4628,asmbl_4629	none	STRG.12637.1,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1269,blat.proc3825154.chain_1273	5	blat.proc3825154.chain_1262,blat.proc3825154.chain_1265,blat.proc3825154.chain_1268,blat.proc3825154.chain_1272	4
scaffold_8	ends_in_intron	1833806	1833806	+	asmbl_52711	none	Trinity_GG_22754_c1_g2_i1	1	blat.proc3825168.chain_2322,blat.proc3825168.chain_2324	2
scaffold_8	retained_intron	11848560	11849714	+	asmbl_53277,asmbl_53279,asmbl_53288	none	STRG.10390.2,STRG.10390.4,STRG.10390.5,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	5	STRG.10390.3,blat.proc3825168.chain_3016,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022	4
scaffold_1	spliced_intron	11269947	11270054	+	asmbl_2091	none	STRG.746.1,Trinity_GG_17778_c0_g1_i1,blat.proc3825164.chain_886	3	STRG.746.3	1
scaffold_22	ends_in_intron	11715174	11715174	+	asmbl_30417	none	blat.proc3825176.chain_2494	1	blat.proc3825176.chain_2493	1
scaffold_9	alternate_exon	5250058	5282500	+	asmbl_54011	none	STRG.11119.1,Trinity_GG_23491_c0_g1_i1,Trinity_GG_23508_c4_g1_i1,Trinity_GG_23508_c7_g1_i1,blat.proc3825168.chain_3620,blat.proc3825168.chain_3653,blat.proc3825168.chain_3657,blat.proc3825168.chain_3660	8	STRG.11119.2,blat.proc3825168.chain_3654	2
scaffold_2	retained_intron	15266383	15266717	+	asmbl_25003,asmbl_25004	none	blat.proc3825164.chain_2607,blat.proc3825164.chain_2608	2	blat.proc3825164.chain_2609	1
scaffold_9	alt_acceptor	2801077	2801078	+	asmbl_53863,asmbl_53867	none	STRG.10918.2,STRG.10918.4,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3431	4	STRG.10918.1,STRG.10918.5,STRG.10918.6,Trinity_GG_23372_c0_g1_i7,Trinity_GG_23372_c0_g1_i8,blat.proc3825168.chain_3427,blat.proc3825168.chain_3429,blat.proc3825168.chain_3430,blat.proc3825168.chain_3433	9
scaffold_22	alt_acceptor	10321874	10321875	+	asmbl_30354	none	STRG.25386.1	1	STRG.25386.2,blat.proc3825176.chain_2361	2
scaffold_6	retained_intron	13573776	13573887	-	asmbl_48913,asmbl_48918	none	STRG.8098.1,Trinity_GG_4614_c2_g1_i1,Trinity_GG_4614_c2_g1_i2,blat.proc3825152.chain_536,blat.proc3825152.chain_537	5	STRG.8098.2,STRG.8098.3,STRG.8098.4,Trinity_GG_4614_c2_g1_i3,Trinity_GG_4614_c2_g1_i4,blat.proc3825152.chain_538,blat.proc3825152.chain_539	7
scaffold_26	alternate_exon	1321803	1322066	-	asmbl_35399	none	blat.proc3825162.chain_1239	1	STRG.27913.1,blat.proc3825162.chain_1237	2
scaffold_14	retained_intron	15469859	15470058	+	asmbl_12603	none	blat.proc3825172.chain_2424	1	STRG.17781.1,Trinity_GG_27042_c0_g1_i6,blat.proc3825172.chain_2425	3
scaffold_21	spliced_intron	405731	406307	-	asmbl_27313	none	Trinity_GG_13230_c0_g1_i4,blat.proc3825160.chain_865	2	STRG.23739.1,Trinity_GG_13230_c0_g1_i1,Trinity_GG_13230_c0_g1_i3,Trinity_GG_13230_c0_g1_i5,Trinity_GG_13230_c0_g1_i6,blat.proc3825160.chain_864,blat.proc3825160.chain_866,blat.proc3825160.chain_867,blat.proc3825160.chain_868	9
scaffold_14	retained_intron	208851	208933	-	asmbl_12799	none	Trinity_GG_9359_c0_g2_i3,blat.proc3825156.chain_1537	2	STRG.16713.1,STRG.16713.2,STRG.16713.4,Trinity_GG_9359_c0_g2_i2,Trinity_GG_9359_c0_g2_i4,Trinity_GG_9359_c0_g2_i5,blat.proc3825156.chain_1536,blat.proc3825156.chain_1538,blat.proc3825156.chain_1539	9
scaffold_3	starts_in_intron	4292076	4292076	+	asmbl_40001	none	blat.proc3825164.chain_3303	1	STRG.3135.1,STRG.3135.3	2
scaffold_3	starts_in_intron	14432191	14432191	-	asmbl_39373	none	Trinity_GG_2047_c0_g1_i3,blat.proc3825148.chain_3612	2	STRG.3785.1,STRG.3785.2,Trinity_GG_2047_c0_g1_i2,Trinity_GG_2047_c0_g1_i6,blat.proc3825148.chain_3609,blat.proc3825148.chain_3610	6
scaffold_6	ends_in_intron	13357710	13357710	-	asmbl_48908	none	Trinity_GG_4598_c0_g1_i10,blat.proc3825152.chain_505	2	STRG.8094.1,STRG.8094.2,blat.proc3825152.chain_508,blat.proc3825152.chain_509	4
scaffold_16	alt_donor	10155720	10155721	-	asmbl_17306,asmbl_17307	none	STRG.19603.1,STRG.19603.3,blat.proc3825158.chain_710	3	STRG.19603.2	1
scaffold_2	alternate_exon	8855524	8855624	+	asmbl_24646	none	STRG.2137.1,Trinity_GG_18519_c0_g1_i1,blat.proc3825164.chain_2322	3	STRG.2137.3	1
scaffold_17	alt_acceptor	12365239	12365240	+	asmbl_19283	none	STRG.20775.3	1	STRG.20775.1,blat.proc3825174.chain_1657	2
scaffold_3	ends_in_intron	8335317	8335317	-	asmbl_39035	none	STRG.3410.2,Trinity_GG_1825_c0_g1_i1,blat.proc3825148.chain_3252	3	STRG.3410.1	1
scaffold_19	spliced_intron	11485415	11485915	-	asmbl_22404,asmbl_22409,asmbl_22412,asmbl_22413,asmbl_22414	none	STRG.22486.1,STRG.22486.2,blat.proc3825158.chain_3241,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3248	6	blat.proc3825158.chain_3249	1
scaffold_18	retained_intron	5787953	5788078	+	asmbl_20604,asmbl_20605,asmbl_20606	none	blat.proc3825174.chain_2310,blat.proc3825174.chain_2311,blat.proc3825174.chain_2312	3	STRG.21328.1	1
scaffold_7	skipped_exon	18783525	18784249	+	asmbl_50534	none	STRG.9696.3	1	STRG.9696.1,STRG.9696.2,STRG.9696.4	3
scaffold_28	alternate_exon	2653055	2653067	+	asmbl_37397,asmbl_37398	none	blat.proc3825178.chain_2669,blat.proc3825178.chain_2670	2	STRG.29457.1,STRG.29457.2,blat.proc3825178.chain_2671	3
scaffold_3	alternate_exon	18322686	18322716	-	asmbl_39609	none	STRG.4034.2	1	STRG.4034.1	1
scaffold_25	ends_in_intron	9040545	9040545	-	asmbl_34474	none	Trinity_GG_15544_c0_g1_i2,blat.proc3825162.chain_1079	2	STRG.27714.1,Trinity_GG_15544_c0_g1_i1,blat.proc3825162.chain_1080	3
scaffold_1	starts_in_intron	11425597	11425597	+	asmbl_2107	none	blat.proc3825164.chain_893	1	STRG.751.1,STRG.751.2,blat.proc3825164.chain_894	3
scaffold_9	retained_intron	6396897	6397036	-	asmbl_55054	none	blat.proc3825152.chain_3363	1	STRG.11174.1,blat.proc3825152.chain_3362	2
scaffold_28	ends_in_intron	4207613	4207613	+	asmbl_37523	none	blat.proc3825178.chain_2812	1	STRG.29616.1,STRG.29616.4,STRG.29616.5,blat.proc3825178.chain_2815	4
scaffold_2	ends_in_intron	18951626	18951626	+	asmbl_25255	none	Trinity_GG_18841_c2_g1_i1,Trinity_GG_18841_c2_g1_i2	2	STRG.2769.2,STRG.2769.3,blat.proc3825164.chain_2976	3
scaffold_9	alt_donor	9694692	9694693	-	asmbl_55235,asmbl_55238,asmbl_55239	none	STRG.11346.2,STRG.11346.3,blat.proc3825152.chain_3614,blat.proc3825152.chain_3616	4	STRG.11346.1,blat.proc3825152.chain_3613,blat.proc3825152.chain_3615	3
scaffold_21	ends_in_intron	3157714	3157714	+	asmbl_28462	none	blat.proc3825176.chain_1148	1	STRG.23959.6	1
scaffold_7	starts_in_intron	12372186	12372186	+	asmbl_50250	none	Trinity_GG_22503_c0_g2_i2,blat.proc3825168.chain_1876	2	STRG.9336.1,blat.proc3825168.chain_1874,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878,blat.proc3825168.chain_1879	5
scaffold_10	ends_in_intron	9546951	9546951	+	asmbl_3400	none	blat.proc3825170.chain_1288	1	STRG.12711.1,STRG.12711.2,STRG.12711.3	3
scaffold_15	starts_in_intron	184137	184137	+	asmbl_14953	none	Trinity_GG_27137_c0_g1_i1,blat.proc3825172.chain_2599	2	STRG.17881.1,STRG.17881.2	2
scaffold_11	retained_intron	1983670	1983757	-	asmbl_6463	none	blat.proc3825154.chain_1944	1	STRG.13360.2,blat.proc3825154.chain_1942	2
scaffold_18	ends_in_intron	5985391	5985391	+	asmbl_20644	none	STRG.21368.1	1	blat.proc3825174.chain_2286,blat.proc3825174.chain_2287,blat.proc3825174.chain_2288,blat.proc3825174.chain_2289,blat.proc3825174.chain_2290,blat.proc3825174.chain_2291,blat.proc3825174.chain_2292,blat.proc3825174.chain_2293	8
scaffold_28	alternate_exon	5231514	5231709	-	asmbl_38260,asmbl_38262	none	STRG.29674.1,blat.proc3825162.chain_2843,blat.proc3825162.chain_2846	3	Trinity_GG_16632_c0_g1_i9,blat.proc3825162.chain_2849	2
scaffold_23	spliced_intron	2126799	2127196	-	asmbl_30692,asmbl_30693	none	STRG.25683.1,Trinity_GG_14361_c0_g1_i2,Trinity_GG_14361_c0_g1_i3,blat.proc3825160.chain_2846,blat.proc3825160.chain_2847	5	STRG.25683.2,Trinity_GG_14361_c0_g1_i4,blat.proc3825160.chain_2848	3
scaffold_4	ends_in_intron	105409	105409	-	asmbl_42302	none	blat.proc3825150.chain_330	1	STRG.4114.1,blat.proc3825150.chain_328	2
scaffold_11	alt_acceptor	3498239	3498240	+	asmbl_5438	none	blat.proc3825170.chain_2034	1	STRG.13484.1,blat.proc3825170.chain_2033	2
scaffold_18	retained_intron	8726889	8727002	+	asmbl_20862	none	blat.proc3825174.chain_2618	1	STRG.21537.1,STRG.21537.2,STRG.21537.3,blat.proc3825174.chain_2615,blat.proc3825174.chain_2616,blat.proc3825174.chain_2617,blat.proc3825174.chain_2620	7
scaffold_25	ends_in_intron	4440836	4440836	+	asmbl_33497	none	blat.proc3825178.chain_484	1	STRG.27374.1,STRG.27374.2,STRG.27374.3,STRG.27374.4,Trinity_GG_32407_c0_g1_i1,Trinity_GG_32407_c0_g1_i2,blat.proc3825178.chain_481,blat.proc3825178.chain_482	8
scaffold_14	alternate_exon	14374093	14374121	+	asmbl_12541	none	blat.proc3825172.chain_2410	1	Trinity_GG_27032_c0_g1_i1	1
scaffold_18	retained_intron	13634278	13634349	-	asmbl_20178,asmbl_20179	none	blat.proc3825158.chain_2649,blat.proc3825158.chain_2650	2	STRG.21796.1,blat.proc3825158.chain_2648	2
scaffold_10	alternate_exon	927707	927873	-	asmbl_4012	none	STRG.11968.2	1	Trinity_GG_6668_c0_g1_i3,blat.proc3825154.chain_539	2
scaffold_9	spliced_intron	11843488	11843598	-	asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55331,asmbl_55333	none	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660,blat.proc3825152.chain_3664	6	blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663	3
scaffold_22	alt_acceptor	2404552	2404553	+	asmbl_29944	none	blat.proc3825176.chain_1869	1	STRG.24781.1,STRG.24781.2,blat.proc3825176.chain_1868	3
scaffold_15	alt_acceptor	11401782	11401783	-	asmbl_14493,asmbl_14494	none	STRG.18606.1,STRG.18606.5,blat.proc3825156.chain_3363,blat.proc3825156.chain_3365	4	STRG.18606.2,STRG.18606.3,blat.proc3825156.chain_3366	3
scaffold_1	alt_donor	20135264	20135265	-	asmbl_1175	none	blat.proc3825148.chain_1398	1	STRG.1386.5,STRG.1386.7	2
scaffold_19	starts_in_intron	12957814	12957814	-	asmbl_22565,asmbl_22567	none	Trinity_GG_12582_c0_g1_i2,Trinity_GG_12582_c0_g1_i4,blat.proc3825158.chain_3401,blat.proc3825158.chain_3403	4	STRG.22612.1,Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3404	5
scaffold_20	alt_acceptor	2074857	2074858	+	asmbl_26464	none	STRG.22958.1,blat.proc3825176.chain_136	2	STRG.22958.2	1
scaffold_4	spliced_intron	17805603	17806025	+	asmbl_42075	none	blat.proc3825166.chain_1696	1	blat.proc3825166.chain_1695	1
scaffold_18	retained_intron	8865903	8866098	-	asmbl_20025	none	STRG.21549.1,Trinity_GG_11998_c1_g1_i1,blat.proc3825158.chain_2364	3	blat.proc3825158.chain_2358,blat.proc3825158.chain_2360,blat.proc3825158.chain_2361	3
scaffold_1	alt_donor	5728837	5728838	+	asmbl_1763,asmbl_1765	none	STRG.387.1,blat.proc3825164.chain_502,blat.proc3825164.chain_503	3	STRG.387.2,blat.proc3825164.chain_504	2
scaffold_13	retained_intron	6431003	6431154	-	asmbl_9786,asmbl_9790,asmbl_9791,asmbl_9792	none	Trinity_GG_8977_c0_g1_i10,blat.proc3825156.chain_845,blat.proc3825156.chain_846,blat.proc3825156.chain_847,blat.proc3825156.chain_849	5	STRG.15943.1,blat.proc3825156.chain_850	2
scaffold_6	spliced_intron	13917524	13917641	-	asmbl_48954,asmbl_48955,asmbl_48959	none	STRG.8139.1,STRG.8139.2,STRG.8139.3,blat.proc3825152.chain_569,blat.proc3825152.chain_570	5	STRG.8139.4,blat.proc3825152.chain_568	2
scaffold_28	alt_acceptor	2907909	2907910	-	asmbl_38104	none	STRG.29486.1	1	STRG.29486.2	1
scaffold_15	spliced_intron	3363315	3363443	-	asmbl_14089	none	STRG.18111.1,blat.proc3825156.chain_2949	2	STRG.18111.2,Trinity_GG_10185_c0_g1_i4,blat.proc3825156.chain_2950	3
scaffold_18	alternate_exon	4561601	4561669	-	asmbl_19808	none	STRG.21245.1	1	STRG.21245.2	1
scaffold_15	alt_acceptor	1422574	1422575	-	asmbl_13951	none	STRG.17953.2	1	STRG.17953.1,blat.proc3825156.chain_2745	2
scaffold_2	retained_exon	5375679	5375991	-	asmbl_23146	none	blat.proc3825148.chain_1906	1	STRG.1946.2,blat.proc3825148.chain_1907	2
scaffold_28	retained_exon	7746842	7747034	-	asmbl_38407	none	STRG.29848.1,blat.proc3825162.chain_3009	2	STRG.29848.2	1
scaffold_14	alt_acceptor	7473929	7473930	-	asmbl_13210	none	STRG.17192.1	1	STRG.17192.2,STRG.17192.3,blat.proc3825156.chain_1871	3
scaffold_13	alternate_exon	6048409	6048724	-	asmbl_9769	none	blat.proc3825156.chain_783	1	STRG.15915.4,blat.proc3825156.chain_784	2
scaffold_5	starts_in_intron	18698885	18698885	-	asmbl_44855	none	Trinity_GG_3896_c1_g1_i1,blat.proc3825150.chain_3105	2	STRG.6997.1,STRG.6997.2,STRG.6997.3,Trinity_GG_3896_c1_g1_i2,blat.proc3825150.chain_3104	5
scaffold_18	starts_in_intron	8152972	8152972	-	asmbl_19999	none	blat.proc3825158.chain_2426	1	STRG.21504.1,STRG.21504.2,blat.proc3825158.chain_2425,blat.proc3825158.chain_2427	4
scaffold_25	retained_intron	6297787	6298085	-	asmbl_34342	none	Trinity_GG_15438_c0_g1_i2,blat.proc3825162.chain_901	2	blat.proc3825162.chain_904	1
scaffold_4	spliced_intron	9998114	9998655	+	asmbl_41638,asmbl_41640,asmbl_41641	none	STRG.4766.1,blat.proc3825166.chain_1184,blat.proc3825166.chain_1187,blat.proc3825166.chain_1188	4	STRG.4766.2,STRG.4766.4,Trinity_GG_19950_c0_g1_i1,blat.proc3825166.chain_1185,blat.proc3825166.chain_1186	5
scaffold_1	alt_acceptor	6283222	6283223	-	asmbl_338,asmbl_339,asmbl_345	none	STRG.423.2,blat.proc3825148.chain_410,blat.proc3825148.chain_411	3	blat.proc3825148.chain_412	1
scaffold_27	retained_intron	638380	638592	-	asmbl_36709	none	Trinity_GG_16002_c1_g1_i3,blat.proc3825162.chain_1844	2	Trinity_GG_16002_c1_g1_i5,blat.proc3825162.chain_1842	2
scaffold_6	alt_acceptor	8516579	8516580	-	asmbl_48563	none	STRG.7724.2	1	STRG.7724.1,blat.proc3825152.chain_61	2
scaffold_17	alt_donor	8615192	8615193	+	asmbl_19006	none	blat.proc3825174.chain_1336	1	STRG.20473.1,STRG.20473.3,STRG.20473.4,STRG.20473.5,blat.proc3825174.chain_1334,blat.proc3825174.chain_1335,blat.proc3825174.chain_1337,blat.proc3825174.chain_1338,blat.proc3825174.chain_1339	9
scaffold_8	retained_intron	15345104	15345457	+	asmbl_53402	none	STRG.10562.2,Trinity_GG_23183_c0_g1_i1,blat.proc3825168.chain_3097	3	STRG.10562.1,Trinity_GG_23183_c0_g1_i2,blat.proc3825168.chain_3098	3
scaffold_19	alt_donor	96600	96601	-	asmbl_21981	none	STRG.21827.1,Trinity_GG_12176_c0_g1_i1,blat.proc3825158.chain_2673	3	STRG.21827.2,Trinity_GG_12176_c0_g1_i2,blat.proc3825158.chain_2671	3
scaffold_21	alternate_exon	386087	386181	-	asmbl_27301	none	STRG.23729.1,Trinity_GG_13221_c0_g1_i1,blat.proc3825160.chain_842	3	STRG.23729.2	1
scaffold_13	retained_intron	15672345	15672386	+	asmbl_11525,asmbl_11526,asmbl_11527,asmbl_11530	none	STRG.16612.1,STRG.16612.2,STRG.16612.3,STRG.16612.5	4	STRG.16612.4	1
scaffold_21	retained_intron	2946480	2946674	-	asmbl_27494	none	Trinity_GG_13293_c0_g1_i2,blat.proc3825160.chain_987	2	STRG.23917.1,STRG.23917.2,STRG.23917.3,blat.proc3825160.chain_984,blat.proc3825160.chain_986,blat.proc3825160.chain_988	6
scaffold_5	alt_donor	2167664	2167665	-	asmbl_43875	none	STRG.5754.3	1	STRG.5754.1,blat.proc3825150.chain_1989	2
scaffold_12	ends_in_intron	1048161	1048161	+	asmbl_7453	none	Trinity_GG_25285_c0_g1_i1,blat.proc3825170.chain_2996	2	STRG.14445.1,Trinity_GG_25285_c0_g1_i2,blat.proc3825170.chain_2997	3
scaffold_23	alternate_exon	5301221	5301282	+	asmbl_31554,asmbl_31557	none	STRG.25908.1,Trinity_GG_31605_c0_g1_i1,Trinity_GG_31605_c0_g1_i3,blat.proc3825176.chain_2849,blat.proc3825176.chain_2851	5	STRG.25908.2,STRG.25908.3,Trinity_GG_31605_c0_g1_i2,Trinity_GG_31605_c0_g1_i4,Trinity_GG_31605_c0_g1_i5,blat.proc3825176.chain_2847,blat.proc3825176.chain_2848,blat.proc3825176.chain_2850	8
scaffold_1	alt_acceptor	1966734	1966735	-	asmbl_93	none	STRG.123.2	1	STRG.123.1,blat.proc3825148.chain_111	2
scaffold_2	alt_donor	10646807	10646808	-	asmbl_23431	none	STRG.2226.1	1	STRG.2226.2	1
scaffold_6	ends_in_intron	15085941	15085941	-	asmbl_49050	none	blat.proc3825152.chain_665	1	STRG.8272.1,Trinity_GG_4678_c0_g1_i1,Trinity_GG_4678_c0_g1_i4,blat.proc3825152.chain_663,blat.proc3825152.chain_664	5
scaffold_4	retained_intron	753564	753737	-	asmbl_42346	none	STRG.4147.1,Trinity_GG_2308_c0_g1_i1,blat.proc3825150.chain_376	3	STRG.4147.2	1
scaffold_1	spliced_intron	11395793	11396048	+	asmbl_2096	none	STRG.748.1,blat.proc3825164.chain_919	2	STRG.748.2,blat.proc3825164.chain_917	2
scaffold_16	ends_in_intron	10697001	10697001	+	asmbl_16550	none	blat.proc3825174.chain_538	1	STRG.19625.1,blat.proc3825158.chain_699,blat.proc3825174.chain_539	3
scaffold_1	starts_in_intron	4226050	4226050	+	asmbl_1643	none	Trinity_GG_17494_c1_g1_i1,blat.proc3825164.chain_382	2	STRG.254.1,blat.proc3825164.chain_377,blat.proc3825164.chain_379	3
scaffold_3	retained_intron	13801022	13801246	-	asmbl_39303,asmbl_39304,asmbl_39305	none	STRG.3726.1,Trinity_GG_2036_c0_g1_i1,Trinity_GG_2036_c0_g1_i4,blat.proc3825148.chain_3594,blat.proc3825148.chain_3596	5	STRG.3726.2,blat.proc3825148.chain_3595	2
scaffold_18	spliced_intron	7686561	7686708	+	asmbl_20783,asmbl_20785	none	STRG.21474.2,blat.proc3825174.chain_2519	2	STRG.21474.3,STRG.21474.5,Trinity_GG_29179_c0_g1_i14,blat.proc3825174.chain_2511,blat.proc3825174.chain_2512,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518	7
scaffold_21	starts_in_intron	8320902	8320902	+	asmbl_28809	none	Trinity_GG_30760_c0_g1_i1,blat.proc3825176.chain_1485	2	STRG.24375.1	1
scaffold_7	alt_donor	18360174	18360175	-	asmbl_51462,asmbl_51464	none	STRG.9667.1,blat.proc3825152.chain_2024,blat.proc3825152.chain_2025	3	STRG.9667.2	1
scaffold_3	alt_acceptor	13768925	13768926	+	asmbl_40458	none	STRG.3721.1,blat.proc3825166.chain_214	2	STRG.3721.3,blat.proc3825166.chain_215	2
scaffold_14	alt_acceptor	917457	917458	+	asmbl_11780	none	STRG.16761.1,blat.proc3825172.chain_1522	2	STRG.16761.2,STRG.16761.3	2
scaffold_21	spliced_intron	5536672	5536770	-	asmbl_27674,asmbl_27675,asmbl_27676	none	STRG.24086.1,blat.proc3825160.chain_1271,blat.proc3825160.chain_1275	3	STRG.24086.2,Trinity_GG_13445_c0_g1_i9,blat.proc3825160.chain_1274,blat.proc3825160.chain_1277	4
scaffold_15	starts_in_intron	8598740	8598740	-	asmbl_14341	none	blat.proc3825156.chain_3266	1	STRG.18408.1,blat.proc3825156.chain_3265	2
scaffold_2	alternate_exon	7215130	7215153	+	asmbl_24551	none	blat.proc3825164.chain_2274	1	STRG.2054.4,Trinity_GG_18495_c0_g1_i3,blat.proc3825164.chain_2271	3
scaffold_24	retained_intron	8747030	8747465	+	asmbl_32440	none	STRG.26888.2,Trinity_GG_32167_c0_g2_i1,blat.proc3825178.chain_76	3	STRG.26888.1,Trinity_GG_32167_c0_g1_i1,blat.proc3825178.chain_75	3
scaffold_3	starts_in_intron	8309718	8309718	-	asmbl_39033	none	blat.proc3825148.chain_3209	1	STRG.3405.1,blat.proc3825148.chain_3210	2
scaffold_2	starts_in_intron	6760784	6760784	-	asmbl_23229	none	Trinity_GG_1118_c0_g1_i3,blat.proc3825148.chain_2010	2	STRG.2029.1,STRG.2029.2,STRG.2029.3,STRG.2029.4,blat.proc3825148.chain_2011,blat.proc3825148.chain_2012,blat.proc3825148.chain_2013	7
scaffold_2	alternate_exon	5113328	5113483	-	asmbl_23129	none	STRG.1926.1,Trinity_GG_1050_c1_g1_i2,blat.proc3825148.chain_1864	3	Trinity_GG_1050_c1_g1_i1,blat.proc3825148.chain_1865	2
scaffold_6	retained_exon	17886316	17886665	+	asmbl_47796,asmbl_47797	none	STRG.8482.2,STRG.8482.3,Trinity_GG_21935_c0_g1_i2,Trinity_GG_21935_c0_g1_i3,blat.proc3825168.chain_874,blat.proc3825168.chain_877	6	STRG.8482.1,Trinity_GG_21935_c0_g1_i4,blat.proc3825168.chain_875	3
scaffold_24	alt_acceptor	10379595	10379596	-	asmbl_33187	none	STRG.27000.1	1	STRG.27000.2	1
scaffold_20	alternate_exon	11481215	11482674	+	asmbl_27051	none	STRG.23653.2,Trinity_GG_30405_c0_g1_i2,blat.proc3825176.chain_846	3	STRG.23653.4	1
scaffold_5	retained_intron	6933179	6933389	+	asmbl_45466	none	blat.proc3825166.chain_2323	1	STRG.6107.1,blat.proc3825166.chain_2320	2
scaffold_24	starts_in_intron	8748134	8748134	+	asmbl_32442	none	Trinity_GG_32167_c0_g1_i2,blat.proc3825178.chain_74	2	STRG.26888.1,STRG.26888.2,STRG.26888.3,Trinity_GG_32167_c0_g1_i1,blat.proc3825178.chain_75	5
scaffold_6	alternate_exon	12116759	12116975	+	asmbl_47373,asmbl_47376	none	STRG.7985.3,Trinity_GG_21681_c0_g1_i2,Trinity_GG_21681_c0_g1_i3,blat.proc3825168.chain_428,blat.proc3825168.chain_429	5	STRG.7985.1,STRG.7985.2,blat.proc3825168.chain_430	3
scaffold_3	alt_donor	13424512	13424513	-	asmbl_39263,asmbl_39264	none	STRG.3693.4,blat.proc3825148.chain_3590	2	STRG.3693.3,blat.proc3825148.chain_3585	2
scaffold_20	retained_exon	1469861	1469910	-	asmbl_25576	none	blat.proc3825158.chain_3736	1	STRG.22868.2,STRG.22868.4,blat.proc3825158.chain_3739	3
scaffold_10	retained_exon	16258477	16258562	+	asmbl_3709,asmbl_3710	none	STRG.13106.1,STRG.13106.3	2	STRG.13106.2,Trinity_GG_24504_c0_g1_i2,blat.proc3825170.chain_1658,blat.proc3825170.chain_1659	4
scaffold_20	ends_in_intron	6199401	6199401	-	asmbl_25827	none	blat.proc3825160.chain_268	1	STRG.23222.1,blat.proc3825160.chain_269	2
scaffold_4	alt_acceptor	13807153	13807154	+	asmbl_41825	none	STRG.5000.2,blat.proc3825166.chain_1429	2	STRG.5000.1,blat.proc3825166.chain_1428	2
scaffold_7	alt_acceptor	17339247	17339248	-	asmbl_51427	none	STRG.9613.1	1	STRG.9613.4	1
scaffold_13	ends_in_intron	11539941	11539941	+	asmbl_11274	none	blat.proc3825172.chain_1024	1	STRG.16304.1,blat.proc3825172.chain_1022,blat.proc3825172.chain_1027	3
scaffold_2	starts_in_intron	17614373	17614373	+	asmbl_25188	none	Trinity_GG_18824_c2_g1_i1,blat.proc3825164.chain_2946	2	STRG.2653.1,STRG.2653.2,Trinity_GG_18824_c1_g1_i1,blat.proc3825164.chain_2945	4
scaffold_19	spliced_intron	13266345	13266432	-	asmbl_22634	none	STRG.22646.1,blat.proc3825158.chain_3494	2	blat.proc3825158.chain_3495	1
scaffold_25	retained_exon	3293326	3293378	-	asmbl_34118	none	STRG.27284.3,blat.proc3825162.chain_657	2	STRG.27284.2,blat.proc3825162.chain_656	2
scaffold_17	alt_acceptor	8318616	8318617	+	asmbl_18964,asmbl_18965,asmbl_18966,asmbl_18967,asmbl_18968,asmbl_18971	none	STRG.20456.1,STRG.20456.2,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1202,blat.proc3825174.chain_1206	9	STRG.20456.3	1
scaffold_23	retained_exon	7915793	7916870	-	asmbl_31057	none	STRG.26100.2,blat.proc3825160.chain_3255	2	STRG.26100.3	1
scaffold_10	skipped_exon	16257718	16258476	+	asmbl_3709,asmbl_3710	none	STRG.13106.1,STRG.13106.3	2	STRG.13106.2,Trinity_GG_24504_c0_g1_i2,blat.proc3825170.chain_1658,blat.proc3825170.chain_1659	4
scaffold_5	retained_intron	4866436	4866834	+	asmbl_45308,asmbl_45309	none	STRG.5946.3,Trinity_GG_20566_c0_g1_i1,blat.proc3825166.chain_2171,blat.proc3825166.chain_2173	4	STRG.5946.1,blat.proc3825166.chain_2170	2
scaffold_4	spliced_intron	4112681	4112829	-	asmbl_42480,asmbl_42484,asmbl_42485	none	STRG.4317.1,blat.proc3825150.chain_476,blat.proc3825150.chain_478,blat.proc3825150.chain_481	4	blat.proc3825150.chain_475	1
scaffold_2	spliced_intron	16414525	16414765	-	asmbl_23688,asmbl_23690,asmbl_23691,asmbl_23692,asmbl_23694	none	STRG.2587.1,STRG.2587.2,STRG.2587.3,blat.proc3825148.chain_2556,blat.proc3825148.chain_2558,blat.proc3825148.chain_2559	6	blat.proc3825148.chain_2557	1
scaffold_2	alternate_exon	7467432	7469616	-	asmbl_23263	none	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2	blat.proc3825148.chain_2062	1
scaffold_4	skipped_exon	15677652	15677958	-	asmbl_43111,asmbl_43112,asmbl_43113	none	STRG.5151.1,STRG.5151.2,blat.proc3825150.chain_1295,blat.proc3825150.chain_1296,blat.proc3825150.chain_1297	5	blat.proc3825150.chain_1298	1
scaffold_13	alt_donor	909320	909321	-	asmbl_9381,asmbl_9382,asmbl_9384,asmbl_9385	none	STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_268,blat.proc3825156.chain_272	5	STRG.15470.1,STRG.15470.3,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_271	5
scaffold_4	alt_acceptor	17419110	17419111	-	asmbl_43261	none	STRG.5328.2	1	STRG.5328.1,STRG.5328.4	2
scaffold_3	retained_intron	1767415	1767456	+	asmbl_39882	none	Trinity_GG_19006_c0_g1_i3,blat.proc3825164.chain_3228	2	STRG.2994.4	1
scaffold_8	starts_in_intron	9928139	9928139	-	asmbl_52075	none	blat.proc3825152.chain_2452	1	STRG.10245.1,blat.proc3825152.chain_2451	2
scaffold_19	alt_donor	12491455	12491456	+	asmbl_21808,asmbl_21809,asmbl_21811,asmbl_21812	none	STRG.22590.1,STRG.22590.3,STRG.22590.4,blat.proc3825174.chain_3624,blat.proc3825174.chain_3625,blat.proc3825174.chain_3626	6	STRG.22590.5	1
scaffold_4	retained_intron	13434608	13434816	-	asmbl_42998	none	blat.proc3825150.chain_1164	1	STRG.4982.1,blat.proc3825150.chain_1165	2
scaffold_18	alt_acceptor	7547044	7547045	-	asmbl_19957,asmbl_19958	none	STRG.21458.2,STRG.21458.3	2	STRG.21458.1,blat.proc3825158.chain_2374,blat.proc3825158.chain_2375	3
scaffold_66	starts_in_intron	1701	1701	+	asmbl_49505	none	blat.proc3825178.chain_3221	1	STRG.30099.1	1
scaffold_16	starts_in_intron	8305708	8305708	-	asmbl_17240	none	blat.proc3825158.chain_564	1	STRG.19466.1,blat.proc3825158.chain_565	2
scaffold_23	alternate_exon	5579200	5579339	+	asmbl_31585	none	STRG.25933.4	1	STRG.25933.1,STRG.25933.2,STRG.25933.3,STRG.25933.5,blat.proc3825176.chain_2834,blat.proc3825176.chain_2835,blat.proc3825176.chain_2837,blat.proc3825176.chain_2838,blat.proc3825176.chain_2839,blat.proc3825176.chain_2840,blat.proc3825176.chain_2841	11
scaffold_19	retained_intron	1504648	1504857	+	asmbl_21242,asmbl_21243,asmbl_21244,asmbl_21246	none	STRG.21912.1,STRG.21912.2,STRG.21912.4,STRG.21912.5,Trinity_GG_29420_c0_g2_i1,blat.proc3825174.chain_2938,blat.proc3825174.chain_2941	7	STRG.21912.3,blat.proc3825174.chain_2939	2
scaffold_2	spliced_intron	7468981	7469051	-	asmbl_23260,asmbl_23261,asmbl_23263,asmbl_23265	none	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i24,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2052,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063	7	blat.proc3825148.chain_2058,blat.proc3825148.chain_2064	2
scaffold_10	starts_in_intron	1451239	1451239	-	asmbl_4060	none	blat.proc3825154.chain_565	1	STRG.12017.1,blat.proc3825154.chain_564	2
scaffold_6	alt_acceptor	12972183	12972184	+	asmbl_47460	none	STRG.8057.2,blat.proc3825168.chain_538	2	STRG.8057.1,STRG.8057.3,blat.proc3825168.chain_536,blat.proc3825168.chain_537,blat.proc3825168.chain_539	5
scaffold_21	ends_in_intron	6393902	6393902	+	asmbl_28634	none	Trinity_GG_30650_c2_g1_i1,blat.proc3825176.chain_1283	2	STRG.24166.1,blat.proc3825176.chain_1279,blat.proc3825176.chain_1280,blat.proc3825176.chain_1282	4
scaffold_7	starts_in_intron	8626599	8626599	-	asmbl_51021	none	blat.proc3825152.chain_1479	1	STRG.9098.1,blat.proc3825152.chain_1480	2
scaffold_18	alt_donor	7867713	7867714	+	asmbl_20801,asmbl_20802,asmbl_20808	none	STRG.21488.3,STRG.21488.5,Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i3,blat.proc3825174.chain_2450,blat.proc3825174.chain_2455	6	STRG.21488.1,STRG.21488.2,Trinity_GG_29146_c0_g1_i18,blat.proc3825174.chain_2452,blat.proc3825174.chain_2456,blat.proc3825174.chain_2458,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	8
scaffold_28	retained_intron	2109125	2109263	+	asmbl_37324	none	blat.proc3825178.chain_2535	1	STRG.29372.1	1
scaffold_11	alternate_exon	8713498	8717399	-	asmbl_6869,asmbl_6870	none	STRG.13902.1,blat.proc3825154.chain_2437,blat.proc3825154.chain_2439,blat.proc3825154.chain_2441	4	Trinity_GG_7765_c0_g1_i2,blat.proc3825154.chain_2440	2
scaffold_17	skipped_exon	14349448	14351180	-	asmbl_18425	none	STRG.20914.1,blat.proc3825158.chain_1891	2	blat.proc3825158.chain_1892	1
scaffold_10	spliced_intron	379136	379266	-	asmbl_3945,asmbl_3946,asmbl_3947,asmbl_3948,asmbl_3949	none	STRG.11922.1,STRG.11922.2,STRG.11922.3,STRG.11922.4,Trinity_GG_6631_c0_g1_i1,blat.proc3825154.chain_456,blat.proc3825154.chain_461,blat.proc3825154.chain_462	8	Trinity_GG_6631_c0_g1_i5,blat.proc3825154.chain_460	2
scaffold_8	starts_in_intron	9585787	9585787	+	asmbl_53085	none	STRG.10216.3,blat.proc3825168.chain_2775	2	blat.proc3825168.chain_2772,blat.proc3825168.chain_2776	2
scaffold_7	spliced_intron	5910425	5910739	-	asmbl_50898	none	STRG.8896.2	1	STRG.8896.1,blat.proc3825152.chain_1331	2
scaffold_23	retained_intron	7005689	7006309	-	asmbl_31007	none	Trinity_GG_14528_c0_g1_i2,blat.proc3825160.chain_3122	2	STRG.26025.3,STRG.26025.4	2
scaffold_2	retained_intron	4070470	4071066	-	asmbl_23049	none	Trinity_GG_1029_c0_g1_i2,blat.proc3825148.chain_1832	2	STRG.1852.2,Trinity_GG_1029_c0_g1_i1,blat.proc3825148.chain_1831	3
scaffold_3	starts_in_intron	18375422	18375422	-	asmbl_39623	none	blat.proc3825150.chain_223	1	STRG.4043.1,STRG.4043.2,blat.proc3825150.chain_222	3
scaffold_4	skipped_exon	16480998	16481263	-	asmbl_43177	none	STRG.5225.1,blat.proc3825150.chain_1404	2	blat.proc3825150.chain_1405	1
scaffold_11	alt_acceptor	13254292	13254293	-	asmbl_7125,asmbl_7128	none	STRG.14198.4,blat.proc3825154.chain_2769	2	STRG.14198.2,STRG.14198.3,blat.proc3825154.chain_2767,blat.proc3825154.chain_2771	4
scaffold_1	alternate_exon	11444143	11445015	+	asmbl_2110	none	STRG.753.1,blat.proc3825164.chain_855	2	STRG.753.2,blat.proc3825164.chain_854	2
scaffold_2	ends_in_intron	16474498	16474498	-	asmbl_23698	none	blat.proc3825148.chain_2544	1	STRG.2586.1,blat.proc3825148.chain_2541,blat.proc3825148.chain_2543	3
scaffold_23	alternate_exon	6318939	6318987	-	asmbl_30977	none	STRG.25979.1	1	STRG.25979.2,blat.proc3825160.chain_3176	2
scaffold_28	alt_acceptor	1576299	1576300	+	asmbl_37311	none	STRG.29344.2	1	STRG.29344.1,blat.proc3825178.chain_2559	2
scaffold_5	alt_acceptor	19029108	19029109	-	asmbl_44884,asmbl_44886,asmbl_44889,asmbl_44892	none	STRG.7022.1,STRG.7022.2,STRG.7022.5,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133	5	STRG.7022.4	1
scaffold_1	starts_in_intron	44426	44426	-	asmbl_5	none	Trinity_GG_34_c3_g1_i1,blat.proc3825148.chain_68	2	STRG.11.1,blat.proc3825148.chain_63,blat.proc3825148.chain_64	3
scaffold_5	alt_acceptor	9085434	9085435	+	asmbl_45599,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6	Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2480	2
scaffold_24	starts_in_intron	10483539	10483539	+	asmbl_32567	none	Trinity_GG_32229_c0_g1_i3,blat.proc3825178.chain_196	2	STRG.27018.4,STRG.27018.5,blat.proc3825178.chain_197	3
scaffold_24	alternate_exon	2520807	2520890	-	asmbl_32794	none	blat.proc3825160.chain_3608	1	blat.proc3825160.chain_3607	1
scaffold_25	retained_intron	5827048	5827724	-	asmbl_34295,asmbl_34297	none	blat.proc3825162.chain_874,blat.proc3825162.chain_881	2	STRG.27479.3,blat.proc3825162.chain_878	2
scaffold_19	alt_acceptor	6743708	6743709	+	asmbl_21440	none	STRG.22194.2,Trinity_GG_29562_c0_g1_i2,blat.proc3825174.chain_3187	3	STRG.22194.1,Trinity_GG_29562_c0_g1_i1,blat.proc3825174.chain_3186	3
scaffold_18	spliced_intron	824551	824807	+	asmbl_20329	none	blat.proc3825174.chain_1871	1	STRG.21008.2,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	3
scaffold_4	starts_in_intron	18996089	18996089	+	asmbl_42118	none	Trinity_GG_20322_c0_g1_i3	1	STRG.5476.1	1
scaffold_12	starts_in_intron	11324410	11324410	+	asmbl_7961	none	STRG.15068.3	1	STRG.15068.1,STRG.15068.2,Trinity_GG_25617_c0_g1_i1,Trinity_GG_25617_c0_g1_i2,blat.proc3825170.chain_3584,blat.proc3825170.chain_3585	6
scaffold_11	spliced_intron	5898660	5898777	-	asmbl_6693	none	STRG.13660.2,blat.proc3825154.chain_2231	2	STRG.13660.1,blat.proc3825154.chain_2232	2
scaffold_22	alt_acceptor	10682062	10682063	-	asmbl_29615	none	STRG.25415.2	1	STRG.25415.1	1
scaffold_15	spliced_intron	8039747	8039835	-	asmbl_14328	none	blat.proc3825156.chain_3226	1	STRG.18380.2,blat.proc3825156.chain_3223,blat.proc3825156.chain_3225	3
scaffold_11	spliced_intron	4744010	4744101	-	asmbl_6622,asmbl_6623,asmbl_6624,asmbl_6625	none	STRG.13567.1,STRG.13567.2,blat.proc3825154.chain_2163,blat.proc3825154.chain_2164,blat.proc3825154.chain_2166	5	blat.proc3825154.chain_2167	1
scaffold_21	alternate_exon	7726376	7726557	+	asmbl_28766	none	STRG.24316.4	1	STRG.24316.1,STRG.24316.3,blat.proc3825176.chain_1476	3
scaffold_5	retained_exon	13807787	13807804	-	asmbl_44561,asmbl_44565	none	STRG.6602.1,blat.proc3825150.chain_2814,blat.proc3825150.chain_2815	3	STRG.6602.3,blat.proc3825150.chain_2813	2
scaffold_9	retained_exon	3675428	3675502	-	asmbl_54926	none	STRG.10993.5	1	STRG.10993.1,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	5
scaffold_24	retained_exon	4280659	4280795	+	asmbl_32178,asmbl_32179	none	STRG.26586.2,STRG.26586.3,blat.proc3825176.chain_3528	3	STRG.26586.1,blat.proc3825176.chain_3529	2
scaffold_1325	alt_donor	1702	1703	+	asmbl_11713	none	STRG.30586.3	1	STRG.30586.1,STRG.30586.2	2
scaffold_7	ends_in_intron	11873104	11873104	-	asmbl_51172	none	Trinity_GG_5251_c0_g1_i3,blat.proc3825152.chain_1679	2	STRG.9306.1,STRG.9306.2	2
scaffold_28	retained_intron	107460	108782	-	asmbl_37892,asmbl_37893,asmbl_37894	none	blat.proc3825162.chain_2421,blat.proc3825162.chain_2423,blat.proc3825162.chain_2424	3	STRG.29246.1,blat.proc3825162.chain_2426	2
scaffold_11	skipped_exon	8896235	8898169	-	asmbl_6883	none	STRG.13911.2	1	STRG.13911.1	1
scaffold_5	starts_in_intron	10534616	10534616	-	asmbl_44361	none	blat.proc3825150.chain_2540	1	STRG.6342.1,blat.proc3825150.chain_2541	2
scaffold_6	retained_intron	13224669	13224802	+	asmbl_47501	none	Trinity_GG_21752_c0_g2_i1,blat.proc3825168.chain_579	2	STRG.8084.3,blat.proc3825168.chain_572,blat.proc3825168.chain_573	3
scaffold_4	spliced_intron	13183547	13184043	-	asmbl_42979,asmbl_42980,asmbl_42981	none	STRG.4962.1,STRG.4962.2,STRG.4962.3,blat.proc3825150.chain_1153,blat.proc3825150.chain_1154,blat.proc3825150.chain_1156	6	blat.proc3825150.chain_1155	1
scaffold_7	alternate_exon	3333445	3334334	-	asmbl_50787	none	STRG.8738.2,blat.proc3825152.chain_1207	2	STRG.8738.3,blat.proc3825152.chain_1205	2
scaffold_2	alternate_exon	9140505	9140586	-	asmbl_23352,asmbl_23355	none	STRG.2159.1,blat.proc3825148.chain_2180	2	STRG.2159.2,blat.proc3825148.chain_2181	2
scaffold_12	alt_acceptor	16247318	16247319	+	asmbl_8155,asmbl_8158	none	STRG.15380.1,Trinity_GG_25754_c0_g1_i2,blat.proc3825172.chain_85	3	STRG.15380.2,Trinity_GG_25754_c0_g1_i3,blat.proc3825172.chain_83	3
scaffold_17	alt_acceptor	5997662	5997663	+	asmbl_18834,asmbl_18836,asmbl_18838	none	STRG.20285.4,STRG.20285.5,blat.proc3825174.chain_1141	3	STRG.20285.1,STRG.20285.2	2
scaffold_2	starts_in_intron	7470457	7470457	-	asmbl_23264	none	blat.proc3825148.chain_2058	1	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i24,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2052,blat.proc3825148.chain_2057,blat.proc3825148.chain_2062,blat.proc3825148.chain_2063,blat.proc3825148.chain_2064	9
scaffold_3	skipped_exon	7956219	7956673	-	asmbl_39006,asmbl_39008	none	STRG.3392.2,blat.proc3825148.chain_3238,blat.proc3825148.chain_3240	3	STRG.3392.1,blat.proc3825148.chain_3237,blat.proc3825148.chain_3241	3
scaffold_10	alternate_exon	9061044	9061187	-	asmbl_4668	none	STRG.12655.3,blat.proc3825154.chain_1203	2	STRG.12655.1,STRG.12655.2,blat.proc3825154.chain_1198,blat.proc3825154.chain_1199,blat.proc3825154.chain_1202	5
scaffold_5	alt_donor	12829801	12829802	-	asmbl_44487,asmbl_44489	none	STRG.6515.2,STRG.6515.3,blat.proc3825150.chain_2693	3	STRG.6515.1,blat.proc3825150.chain_2692	2
scaffold_1	ends_in_intron	17922053	17922053	-	asmbl_1067	none	Trinity_GG_663_c0_g1_i2,blat.proc3825148.chain_1241	2	STRG.1263.2	1
scaffold_1	alt_acceptor	12410979	12410980	+	asmbl_2211	none	STRG.855.1,Trinity_GG_17839_c0_g1_i2,blat.proc3825164.chain_1023	3	STRG.855.2	1
scaffold_24	spliced_intron	1452917	1452990	+	asmbl_32077	none	STRG.26401.3,Trinity_GG_31891_c1_g1_i1,blat.proc3825176.chain_3349	3	STRG.26401.2,Trinity_GG_31891_c1_g1_i2,blat.proc3825176.chain_3350	3
scaffold_13	alt_acceptor	5030	5031	+	asmbl_10453	none	Trinity_GG_25787_c0_g1_i5,blat.proc3825172.chain_136	2	Trinity_GG_25787_c0_g1_i4,blat.proc3825172.chain_139	2
scaffold_1	starts_in_intron	1722449	1722449	+	asmbl_1505	none	blat.proc3825164.chain_225	1	STRG.103.1,blat.proc3825164.chain_226	2
scaffold_7	retained_intron	5063228	5063324	-	asmbl_50870	none	STRG.8842.2,blat.proc3825152.chain_1309	2	STRG.8842.1	1
scaffold_14	spliced_intron	12154408	12154530	+	asmbl_12415	none	STRG.17548.1,blat.proc3825172.chain_2280	2	Trinity_GG_26957_c0_g1_i3,blat.proc3825172.chain_2278	2
scaffold_9	alt_acceptor	11822102	11822103	-	asmbl_55316	none	STRG.11502.5	1	STRG.11502.1	1
scaffold_7	retained_exon	12369335	12369685	+	asmbl_50251	none	blat.proc3825168.chain_1875	1	STRG.9336.1,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878	3
scaffold_20	spliced_intron	9826506	9826707	-	asmbl_26055,asmbl_26056,asmbl_26057	none	STRG.23529.1,STRG.23529.2,blat.proc3825160.chain_613,blat.proc3825160.chain_615,blat.proc3825160.chain_616	5	blat.proc3825160.chain_614	1
scaffold_25	retained_intron	3084202	3084656	-	asmbl_34086	none	STRG.27251.4,Trinity_GG_15234_c0_g1_i6,blat.proc3825162.chain_558	3	STRG.27251.1	1
scaffold_13	retained_exon	14561660	14561718	-	asmbl_10197	none	STRG.16504.3,blat.proc3825156.chain_1270	2	STRG.16504.1,STRG.16504.4,blat.proc3825156.chain_1271,blat.proc3825156.chain_1272	4
scaffold_2	alt_donor	18405372	18405373	-	asmbl_23780	none	STRG.2732.2	1	STRG.2732.1,blat.proc3825148.chain_2669	2
scaffold_16	retained_intron	2571074	2571165	+	asmbl_16130	none	STRG.19148.1	1	STRG.19148.2	1
scaffold_4	alt_donor	5649000	5649001	-	asmbl_42616	none	STRG.4472.1,blat.proc3825150.chain_669	2	blat.proc3825150.chain_670	1
scaffold_28	alt_acceptor	3742838	3742839	-	asmbl_38163,asmbl_38164,asmbl_38171	none	STRG.29587.3,STRG.29587.4,blat.proc3825162.chain_2735	3	STRG.29587.1,STRG.29587.2,blat.proc3825162.chain_2734,blat.proc3825162.chain_2739	4
scaffold_23	alternate_exon	2207890	2208346	-	asmbl_30715	none	STRG.25698.4	1	STRG.25698.2,STRG.25698.5	2
scaffold_21	alt_donor	7729046	7729047	+	asmbl_28764,asmbl_28766,asmbl_28768	none	STRG.24316.3,STRG.24316.4,blat.proc3825176.chain_1476,blat.proc3825176.chain_1477	4	STRG.24316.1	1
scaffold_1	retained_intron	14349751	14349879	-	asmbl_897	none	blat.proc3825148.chain_1026	1	STRG.1033.1,STRG.1033.2,blat.proc3825148.chain_1023,blat.proc3825148.chain_1024,blat.proc3825148.chain_1025	5
scaffold_6	retained_intron	19075642	19076743	+	asmbl_47868,asmbl_47871,asmbl_47872	none	STRG.8575.1,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i5,Trinity_GG_21983_c0_g1_i6,blat.proc3825168.chain_948,blat.proc3825168.chain_949,blat.proc3825168.chain_951	7	STRG.8575.2,Trinity_GG_21983_c0_g1_i4,blat.proc3825168.chain_950	3
scaffold_2	starts_in_intron	4687406	4687406	-	asmbl_23085	none	blat.proc3825148.chain_1850	1	STRG.1889.1,STRG.1889.3	2
scaffold_13	retained_intron	11601420	11601630	+	asmbl_11288,asmbl_11293,asmbl_11296,asmbl_11298	none	blat.proc3825172.chain_1028,blat.proc3825172.chain_1030,blat.proc3825172.chain_1033,blat.proc3825172.chain_1034	4	STRG.16316.1,STRG.16316.3,STRG.16316.7,blat.proc3825172.chain_1029,blat.proc3825172.chain_1032,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	7
scaffold_11	alternate_exon	3495172	3496182	+	asmbl_5438	none	blat.proc3825170.chain_2034	1	STRG.13484.2,blat.proc3825170.chain_2033	2
scaffold_4	alt_donor	7087747	7087748	+	asmbl_41459,asmbl_41460,asmbl_41461	none	STRG.4547.1,STRG.4547.2,STRG.4547.3,blat.proc3825166.chain_1039,blat.proc3825166.chain_1040	5	STRG.4547.4	1
scaffold_15	starts_in_intron	4961496	4961496	+	asmbl_15180	none	blat.proc3825172.chain_2893	1	STRG.18207.1,STRG.18207.2,STRG.18207.3,blat.proc3825172.chain_2889,blat.proc3825172.chain_2890	5
scaffold_8	spliced_intron	6714778	6715271	+	asmbl_52966	none	STRG.10042.2,Trinity_GG_22865_c0_g1_i1,blat.proc3825168.chain_2548	3	STRG.10042.1,Trinity_GG_22865_c0_g1_i2,blat.proc3825168.chain_2549	3
scaffold_9	starts_in_intron	10766466	10766466	+	asmbl_54291	none	Trinity_GG_23661_c0_g1_i2,blat.proc3825170.chain_214	2	STRG.11383.1,blat.proc3825170.chain_215	2
scaffold_14	retained_intron	2122954	2123146	-	asmbl_12920	none	Trinity_GG_9442_c1_g1_i1,blat.proc3825156.chain_1675	2	STRG.16836.1,blat.proc3825156.chain_1672,blat.proc3825156.chain_1673	3
scaffold_12	retained_exon	14104459	14104564	-	asmbl_8980,asmbl_8985	none	Trinity_GG_8557_c0_g1_i6,blat.proc3825156.chain_95,blat.proc3825156.chain_96	3	STRG.15241.1,Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i4,blat.proc3825156.chain_87,blat.proc3825156.chain_91,blat.proc3825156.chain_92,blat.proc3825156.chain_93,blat.proc3825156.chain_94	8
scaffold_16	ends_in_intron	5388271	5388271	-	asmbl_17095	none	blat.proc3825158.chain_440	1	STRG.19287.1,STRG.19287.3,blat.proc3825158.chain_441,blat.proc3825158.chain_442	4
scaffold_8	spliced_intron	17815077	17815250	+	asmbl_53510,asmbl_53511	none	STRG.10693.4,blat.proc3825168.chain_3178	2	blat.proc3825168.chain_3180,blat.proc3825168.chain_3181	2
scaffold_5	ends_in_intron	4639199	4639199	-	asmbl_43970	none	blat.proc3825150.chain_2098	1	STRG.5916.1,blat.proc3825150.chain_2099,blat.proc3825150.chain_2100	3
scaffold_6	retained_exon	13133948	13134017	-	asmbl_48880	none	STRG.8070.1,blat.proc3825152.chain_458	2	STRG.8070.2,Trinity_GG_4584_c0_g1_i2,blat.proc3825152.chain_460	3
scaffold_3	spliced_intron	8245052	8245071	-	asmbl_39029	none	STRG.3403.4	1	STRG.3403.2	1
scaffold_11	alt_donor	7668428	7668429	-	asmbl_6796,asmbl_6797	none	STRG.13780.1,STRG.13780.2,blat.proc3825154.chain_2375	3	STRG.13780.3	1
scaffold_26	spliced_intron	9772322	9772904	+	asmbl_35260,asmbl_35261,asmbl_35264,asmbl_35267	none	STRG.28516.2,STRG.28516.6,blat.proc3825178.chain_1638,blat.proc3825178.chain_1640	4	STRG.28516.3,STRG.28516.4,STRG.28516.5,Trinity_GG_33086_c0_g1_i6,blat.proc3825178.chain_1637,blat.proc3825178.chain_1639	6
scaffold_1	alt_acceptor	12068101	12068102	-	asmbl_686	none	STRG.825.3	1	STRG.825.1	1
scaffold_15	ends_in_intron	12597979	12597979	-	asmbl_14588	none	blat.proc3825156.chain_3578	1	STRG.18712.1,blat.proc3825156.chain_3573,blat.proc3825156.chain_3577	3
scaffold_19	alt_donor	96338	96339	-	asmbl_21980	none	STRG.21827.2,Trinity_GG_12176_c0_g1_i2,blat.proc3825158.chain_2671	3	STRG.21827.1,Trinity_GG_12176_c0_g1_i1,blat.proc3825158.chain_2673	3
scaffold_4	starts_in_intron	3233095	3233095	-	asmbl_42417	none	STRG.4248.2	1	STRG.4248.1	1
scaffold_6	skipped_exon	4279650	4280395	-	asmbl_48303	none	STRG.7403.2	1	STRG.7403.1,Trinity_GG_4134_c1_g1_i3,blat.proc3825150.chain_3501,blat.proc3825150.chain_3502	4
scaffold_16	spliced_intron	411662	411800	-	asmbl_16864,asmbl_16866	none	STRG.19031.1,blat.proc3825158.chain_164,blat.proc3825158.chain_165	3	blat.proc3825158.chain_163	1
scaffold_27	retained_intron	512659	512738	-	asmbl_36695,asmbl_36696	none	STRG.28572.1,STRG.28572.2,Trinity_GG_15987_c0_g1_i2,blat.proc3825162.chain_1810	4	STRG.28572.3,blat.proc3825162.chain_1809	2
scaffold_22	skipped_exon	685158	685914	+	asmbl_29878	none	Trinity_GG_30975_c0_g1_i1,blat.proc3825176.chain_1840	2	STRG.24720.1	1
scaffold_3	starts_in_intron	8422375	8422375	+	asmbl_40213	none	blat.proc3825164.chain_3664	1	STRG.3409.1,Trinity_GG_19238_c0_g1_i1,blat.proc3825164.chain_3665	3
scaffold_24	alt_acceptor	10169658	10169659	+	asmbl_32546	none	STRG.26979.2	1	STRG.26979.1,blat.proc3825178.chain_79	2
scaffold_17	retained_intron	9532452	9532877	+	asmbl_19108,asmbl_19109	none	blat.proc3825174.chain_1398,blat.proc3825174.chain_1401	2	STRG.20578.1,STRG.20578.2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1403	6
scaffold_15	spliced_intron	4815601	4815751	-	asmbl_14163,asmbl_14164,asmbl_14166	none	STRG.18206.1,blat.proc3825156.chain_2945,blat.proc3825156.chain_2946,blat.proc3825156.chain_2948	4	blat.proc3825156.chain_2947	1
scaffold_18	spliced_intron	206330	206526	+	asmbl_20272,asmbl_20273,asmbl_20277,asmbl_20278,asmbl_20279	none	STRG.20974.1,STRG.20974.2,Trinity_GG_28858_c0_g1_i4,blat.proc3825174.chain_1917,blat.proc3825174.chain_1918,blat.proc3825174.chain_1920,blat.proc3825174.chain_1921,blat.proc3825174.chain_1922	8	Trinity_GG_28858_c0_g1_i1,blat.proc3825174.chain_1923	2
scaffold_4	alternate_exon	10854906	10855072	+	asmbl_41676	none	STRG.4807.1	1	STRG.4807.3,blat.proc3825166.chain_1275	2
scaffold_3	spliced_intron	13988803	13989079	+	asmbl_40477,asmbl_40483	none	STRG.3744.3,STRG.3744.5,blat.proc3825166.chain_189	3	STRG.3744.2,Trinity_GG_19386_c0_g1_i2,blat.proc3825166.chain_190	3
scaffold_87	alt_donor	14160	14161	+	asmbl_53726	none	STRG.30146.4	1	STRG.30146.3,STRG.30146.5	2
scaffold_15	starts_in_intron	9857943	9857943	-	asmbl_14416	none	STRG.18501.4	1	STRG.18501.1,STRG.18501.2,STRG.18501.3,Trinity_GG_10363_c0_g1_i1,blat.proc3825156.chain_3301	5
scaffold_7	alt_acceptor	12346574	12346575	+	asmbl_50246	none	STRG.9328.2	1	STRG.9328.1,blat.proc3825168.chain_1858	2
scaffold_28	alt_acceptor	2616372	2616373	+	asmbl_37385	none	STRG.29436.2	1	STRG.29436.1	1
scaffold_8	retained_intron	4784352	4784444	-	asmbl_51798	none	blat.proc3825152.chain_2219	1	STRG.9942.1,blat.proc3825152.chain_2218	2
scaffold_18	starts_in_intron	7233562	7233562	+	asmbl_20727	none	Trinity_GG_29143_c0_g2_i1,blat.proc3825174.chain_2446	2	STRG.21429.1,STRG.21429.2,STRG.21429.3,blat.proc3825174.chain_2442,blat.proc3825174.chain_2443,blat.proc3825174.chain_2444,blat.proc3825174.chain_2445	7
scaffold_8	retained_intron	8970436	8970848	-	asmbl_51984	none	Trinity_GG_5668_c0_g2_i1,blat.proc3825152.chain_2426	2	STRG.10148.1,blat.proc3825152.chain_2424,blat.proc3825152.chain_2425	3
scaffold_20	retained_intron	7469036	7469153	-	asmbl_25907,asmbl_25909,asmbl_25911	none	blat.proc3825160.chain_461,blat.proc3825160.chain_465,blat.proc3825160.chain_467	3	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_462,blat.proc3825160.chain_466	4
scaffold_28	alt_donor	9407833	9407834	+	asmbl_37782	none	STRG.29971.1,blat.proc3825178.chain_3111	2	STRG.29971.2,blat.proc3825178.chain_3110	2
scaffold_94	starts_in_intron	10942	10942	+	asmbl_55840,asmbl_55841	none	STRG.30138.2,Trinity_GG_33958_c0_g1_i1,Trinity_GG_34004_c0_g1_i1,Trinity_GG_34004_c0_g1_i2,blat.proc3825178.chain_3200,blat.proc3825178.chain_3261	6	STRG.30138.1,blat.proc3825178.chain_3259	2
scaffold_1	retained_intron	20132580	20132927	+	asmbl_2607	none	Trinity_GG_18065_c0_g1_i2,Trinity_GG_18065_c0_g1_i5,blat.proc3825164.chain_1418,blat.proc3825164.chain_1419	4	STRG.1380.1,Trinity_GG_18065_c0_g1_i1,blat.proc3825164.chain_1417	3
scaffold_11	spliced_intron	9018627	9018713	-	asmbl_6901,asmbl_6902,asmbl_6904,asmbl_6905,asmbl_6906,asmbl_6907	none	STRG.13940.1,STRG.13940.2,Trinity_GG_7749_c0_g1_i6,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406,blat.proc3825154.chain_2407,blat.proc3825154.chain_2408,blat.proc3825154.chain_2409,blat.proc3825154.chain_2410	9	Trinity_GG_7749_c0_g1_i4,blat.proc3825154.chain_2411	2
scaffold_22	spliced_intron	736233	736408	-	asmbl_29123	none	STRG.24726.1,blat.proc3825160.chain_1920	2	STRG.24726.2,blat.proc3825160.chain_1921	2
scaffold_10	retained_exon	13285342	13285507	-	asmbl_4870	none	blat.proc3825154.chain_1545	1	STRG.12922.2,STRG.12922.4,blat.proc3825154.chain_1546,blat.proc3825154.chain_1547	4
scaffold_22	spliced_intron	7488327	7488420	-	asmbl_29408	none	STRG.25093.1,blat.proc3825160.chain_2249	2	STRG.25093.2,Trinity_GG_14018_c0_g1_i1,blat.proc3825160.chain_2250	3
scaffold_13	retained_exon	1526310	1526387	-	asmbl_9415,asmbl_9416	none	STRG.15516.3,Trinity_GG_8698_c0_g1_i1,blat.proc3825156.chain_404	3	STRG.15516.2,STRG.15516.4,Trinity_GG_8698_c0_g1_i5,blat.proc3825156.chain_405	4
scaffold_15	alt_acceptor	11410341	11410342	-	asmbl_14501,asmbl_14508	none	STRG.18616.1,blat.proc3825156.chain_3447,blat.proc3825156.chain_3449	3	blat.proc3825156.chain_3445	1
scaffold_12	retained_exon	9236184	9236296	-	asmbl_8666,asmbl_8669	none	STRG.14939.3,blat.proc3825154.chain_3451	2	STRG.14939.1,blat.proc3825154.chain_3450,blat.proc3825154.chain_3454	3
scaffold_3	alt_acceptor	7583152	7583153	+	asmbl_40164	none	STRG.3346.1,blat.proc3825164.chain_3634	2	STRG.3346.2,blat.proc3825164.chain_3635	2
scaffold_14	alternate_exon	8008700	8009314	+	asmbl_12188	none	blat.proc3825172.chain_1981	1	STRG.17217.2,STRG.17217.3	2
scaffold_7	retained_intron	12649977	12650680	-	asmbl_51260	none	blat.proc3825152.chain_1732	1	STRG.9385.3	1
scaffold_14	retained_exon	8231791	8231817	-	asmbl_13263	none	blat.proc3825156.chain_1988	1	STRG.17241.2,blat.proc3825156.chain_1986,blat.proc3825156.chain_1987	3
scaffold_11	ends_in_intron	3518018	3518018	+	asmbl_5445	none	STRG.13485.1	1	STRG.13485.3	1
scaffold_17	alternate_exon	6906094	6906138	-	asmbl_18007	none	STRG.20354.2,blat.proc3825158.chain_1385	2	STRG.20354.1	1
scaffold_16	alt_acceptor	7372487	7372488	+	asmbl_16336	none	STRG.19397.1,blat.proc3825174.chain_331	2	STRG.19397.2,STRG.19397.3,blat.proc3825174.chain_330	3
scaffold_18	starts_in_intron	5565153	5565153	-	asmbl_19855	none	Trinity_GG_11924_c1_g1_i8,blat.proc3825158.chain_2239	2	STRG.21309.1,STRG.21309.3,Trinity_GG_11924_c1_g1_i1,blat.proc3825158.chain_2237	4
scaffold_4	alternate_exon	1318589	1318713	-	asmbl_42364	none	STRG.4172.1,blat.proc3825150.chain_406	2	STRG.4172.2	1
scaffold_15	alternate_exon	670912	688555	-	asmbl_13938,asmbl_13939	none	STRG.17932.1,Trinity_GG_10063_c1_g1_i1,blat.proc3825156.chain_2721,blat.proc3825156.chain_2722,blat.proc3825156.chain_2725	5	STRG.17932.3,blat.proc3825156.chain_2724	2
scaffold_14	alternate_exon	8007490	8007645	+	asmbl_12189	none	Trinity_GG_26787_c0_g1_i2,blat.proc3825172.chain_1984	2	STRG.17217.2	1
scaffold_8	starts_in_intron	7808695	7808695	-	asmbl_51925,asmbl_51928	none	blat.proc3825152.chain_2313,blat.proc3825152.chain_2316	2	STRG.10100.1,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2318	4
scaffold_11	skipped_exon	8308762	8310348	+	asmbl_5745	none	STRG.13846.1,blat.proc3825170.chain_2382	2	blat.proc3825170.chain_2381	1
scaffold_28	retained_intron	9641239	9641325	+	asmbl_37798	none	STRG.29992.2	1	STRG.29992.1,blat.proc3825162.chain_3624,blat.proc3825178.chain_3132	3
scaffold_21	retained_intron	7010245	7010833	-	asmbl_27775,asmbl_27778	none	STRG.24233.2,blat.proc3825160.chain_1393	2	STRG.24233.1,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392	4
scaffold_6	starts_in_intron	10141505	10141505	-	asmbl_48658	none	blat.proc3825152.chain_195	1	STRG.7848.1,blat.proc3825152.chain_194	2
scaffold_28	ends_in_intron	2622886	2622886	+	asmbl_37388	none	blat.proc3825178.chain_2542	1	STRG.29442.1,blat.proc3825178.chain_2541	2
scaffold_12	alternate_exon	4787046	4789336	-	asmbl_8447,asmbl_8450,asmbl_8457	none	STRG.14660.3,STRG.14660.4,Trinity_GG_8171_c2_g1_i1,blat.proc3825154.chain_3147,blat.proc3825154.chain_3153,blat.proc3825154.chain_3155	6	STRG.14660.1,STRG.14660.2,blat.proc3825154.chain_3145,blat.proc3825154.chain_3150,blat.proc3825154.chain_3151,blat.proc3825154.chain_3152	6
scaffold_27	alt_acceptor	4153104	4153105	-	asmbl_36946	none	STRG.28874.2	1	STRG.28874.1,blat.proc3825162.chain_2118	2
scaffold_20	spliced_intron	5180977	5181010	+	asmbl_26610	none	STRG.23156.1	1	STRG.23156.2	1
scaffold_5	spliced_intron	19648196	19648470	+	asmbl_46329	none	STRG.7055.2	1	STRG.7055.1,Trinity_GG_21183_c0_g1_i2,Trinity_GG_21183_c0_g1_i3,Trinity_GG_21183_c0_g1_i4,blat.proc3825166.chain_3244,blat.proc3825166.chain_3245,blat.proc3825166.chain_3247	7
scaffold_21	retained_intron	3726877	3726965	-	asmbl_27532	none	STRG.23962.3	1	STRG.23962.1,STRG.23962.2,blat.proc3825160.chain_1088,blat.proc3825160.chain_1089,blat.proc3825160.chain_1091	5
scaffold_19	retained_intron	12251512	12251604	+	asmbl_21771	none	Trinity_GG_29774_c0_g1_i2,blat.proc3825174.chain_3548	2	STRG.22554.1,STRG.22554.2,Trinity_GG_29774_c0_g1_i1,blat.proc3825174.chain_3549	4
scaffold_1	spliced_intron	16722860	16722887	+	asmbl_2500	none	STRG.1175.1	1	STRG.1175.2	1
scaffold_9	ends_in_intron	6867499	6867499	-	asmbl_55084	none	Trinity_GG_6158_c0_g1_i4,blat.proc3825152.chain_3342	2	STRG.11198.1,blat.proc3825152.chain_3340,blat.proc3825152.chain_3343	3
scaffold_723	starts_in_intron	3429	3429	-	asmbl_51617,asmbl_51618	none	STRG.30450.2,STRG.30450.3,blat.proc3825162.chain_3549	3	STRG.30450.1,STRG.30450.4,blat.proc3825162.chain_3548,blat.proc3825162.chain_3550	4
scaffold_2	starts_in_intron	1317798	1317798	+	asmbl_24183	none	blat.proc3825164.chain_1794	1	STRG.1595.1,STRG.1595.2,blat.proc3825164.chain_1795	3
scaffold_7	starts_in_intron	4047221	4047221	-	asmbl_50849	none	blat.proc3825152.chain_1274	1	STRG.8803.1,STRG.8803.2	2
scaffold_26	spliced_intron	9083212	9083394	-	asmbl_35764,asmbl_35765,asmbl_35767	none	STRG.28473.1,STRG.28473.2,STRG.28473.3,blat.proc3825162.chain_1681,blat.proc3825162.chain_1682	5	STRG.28473.4,blat.proc3825162.chain_1684	2
scaffold_16	alternate_exon	14543794	14544409	-	asmbl_17462	none	STRG.19850.1	1	blat.proc3825158.chain_900,blat.proc3825158.chain_901,blat.proc3825158.chain_902	3
scaffold_4	starts_in_intron	3220914	3220914	-	asmbl_42415	none	STRG.4243.2	1	STRG.4243.1,Trinity_GG_2320_c0_g1_i1,Trinity_GG_2320_c0_g1_i2,blat.proc3825150.chain_390,blat.proc3825150.chain_391	5
scaffold_27	spliced_intron	2436344	2436418	+	asmbl_36084	none	STRG.28717.2	1	blat.proc3825178.chain_1891	1
scaffold_18	alternate_exon	12935159	12935572	+	asmbl_20981	none	STRG.21740.1	1	STRG.21740.4,blat.proc3825158.chain_2618	2
scaffold_2	skipped_exon	14391396	14392464	+	asmbl_24928	none	STRG.2440.3,blat.proc3825164.chain_2697	2	STRG.2440.1,STRG.2440.2,blat.proc3825164.chain_2694,blat.proc3825164.chain_2695,blat.proc3825164.chain_2696	5
scaffold_6	spliced_intron	17799090	17799282	-	asmbl_49197	none	STRG.8463.2,STRG.8463.3,blat.proc3825152.chain_851	3	blat.proc3825152.chain_849	1
scaffold_24	ends_in_intron	162515	162515	-	asmbl_32700	none	Trinity_GG_14715_c0_g1_i2,blat.proc3825160.chain_3449	2	Trinity_GG_14715_c0_g1_i1,blat.proc3825160.chain_3448	2
scaffold_28	alternate_exon	5633649	5635855	-	asmbl_38313	none	blat.proc3825162.chain_2858	1	STRG.29706.2,STRG.29706.3,STRG.29706.4,Trinity_GG_16637_c0_g1_i3,blat.proc3825162.chain_2854	5
scaffold_27	alternate_exon	3649871	3655685	-	asmbl_36916	none	STRG.28834.1,blat.proc3825162.chain_2074	2	STRG.28834.2,Trinity_GG_16157_c0_g1_i2,blat.proc3825162.chain_2072	3
scaffold_14	alternate_exon	4144684	4153500	+	asmbl_11979,asmbl_11980	none	STRG.16971.1,STRG.16971.3	2	Trinity_GG_26617_c0_g1_i2	1
scaffold_19	alt_donor	12107554	12107555	-	asmbl_22461	none	STRG.22539.4	1	STRG.22539.2,blat.proc3825158.chain_3188	2
scaffold_21	alt_donor	1054169	1054170	-	asmbl_27374,asmbl_27380	none	STRG.23787.2,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922	3	STRG.23787.1,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	3
scaffold_17	spliced_intron	793926	794149	+	asmbl_18574,asmbl_18576,asmbl_18577	none	STRG.19934.1,STRG.19934.2,STRG.19934.3	3	blat.proc3825174.chain_823	1
scaffold_28	starts_in_intron	3905992	3905992	+	asmbl_37502	none	Trinity_GG_33696_c0_g1_i1,blat.proc3825178.chain_2741	2	STRG.29592.1,blat.proc3825178.chain_2742	2
scaffold_18	spliced_intron	12400501	12400526	-	asmbl_20145,asmbl_20146	none	STRG.21709.3,STRG.21709.4	2	STRG.21709.1,STRG.21709.2,Trinity_GG_12126_c0_g1_i7,blat.proc3825158.chain_2581,blat.proc3825158.chain_2583	5
scaffold_6	retained_intron	18025101	18025221	-	asmbl_49222	none	blat.proc3825152.chain_911	1	STRG.8491.1,blat.proc3825152.chain_912	2
scaffold_22	retained_intron	504274	504463	-	asmbl_29093,asmbl_29103	none	STRG.24702.3,Trinity_GG_13790_c0_g1_i10,blat.proc3825160.chain_1869	3	STRG.24702.1,STRG.24702.2,STRG.24702.4,Trinity_GG_13790_c0_g1_i11,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i2,Trinity_GG_13790_c0_g1_i4,blat.proc3825160.chain_1862,blat.proc3825160.chain_1865,blat.proc3825160.chain_1867,blat.proc3825160.chain_1868	11
scaffold_11	spliced_intron	3252760	3253016	-	asmbl_6546	none	STRG.13458.2	1	STRG.13458.1,Trinity_GG_7550_c0_g1_i2,blat.proc3825154.chain_2049,blat.proc3825154.chain_2050	4
scaffold_15	retained_intron	12597437	12597600	-	asmbl_14587,asmbl_14590	none	Trinity_GG_10507_c0_g1_i6,blat.proc3825156.chain_3574,blat.proc3825156.chain_3576	3	STRG.18712.1,blat.proc3825156.chain_3573,blat.proc3825156.chain_3575,blat.proc3825156.chain_3577	4
scaffold_26	ends_in_intron	6345453	6345453	-	asmbl_35678	none	Trinity_GG_15861_c0_g1_i2,blat.proc3825162.chain_1581	2	STRG.28332.1,blat.proc3825162.chain_1582	2
scaffold_15	alternate_exon	6785184	6785387	+	asmbl_15261	none	STRG.18298.1	1	STRG.18298.2,Trinity_GG_27309_c0_g1_i1,blat.proc3825172.chain_2913	3
scaffold_15	retained_intron	181512	182202	+	asmbl_14951	none	STRG.17881.1,Trinity_GG_27137_c0_g1_i3,blat.proc3825172.chain_2601	3	STRG.17881.2	1
scaffold_12	starts_in_intron	2263951	2263951	-	asmbl_8318	none	blat.proc3825154.chain_2985	1	STRG.14490.1,blat.proc3825154.chain_2984	2
scaffold_18	retained_intron	5730383	5730838	+	asmbl_20597	none	STRG.21323.1,Trinity_GG_29058_c0_g2_i2,blat.proc3825174.chain_2281	3	STRG.21323.2,Trinity_GG_29058_c0_g2_i1,blat.proc3825174.chain_2280	3
scaffold_20	starts_in_intron	9100882	9100882	+	asmbl_26828	none	Trinity_GG_30271_c0_g1_i1,blat.proc3825176.chain_612	2	STRG.23455.1,STRG.23455.2,Trinity_GG_30271_c0_g1_i2,blat.proc3825176.chain_615,blat.proc3825176.chain_616	5
scaffold_20	retained_intron	10384363	10384667	+	asmbl_26958	none	blat.proc3825176.chain_672	1	STRG.23583.1,STRG.23583.2,Trinity_GG_30302_c0_g1_i1,blat.proc3825176.chain_670	4
scaffold_8	alt_donor	6019135	6019136	+	asmbl_52921	none	STRG.10013.4,blat.proc3825168.chain_2619	2	STRG.10013.1,blat.proc3825168.chain_2622	2
scaffold_13	ends_in_intron	4082591	4082591	+	asmbl_10762	none	blat.proc3825172.chain_475	1	STRG.15731.1,blat.proc3825172.chain_474	2
scaffold_27	ends_in_intron	3623477	3623477	+	asmbl_36214	none	blat.proc3825178.chain_2012	1	STRG.28832.1,Trinity_GG_33273_c0_g1_i4,Trinity_GG_33273_c0_g1_i5,blat.proc3825178.chain_2010,blat.proc3825178.chain_2011	5
scaffold_15	alt_acceptor	15242407	15242408	-	asmbl_14764	none	STRG.18908.2	1	STRG.18908.1,Trinity_GG_10627_c0_g1_i2,blat.proc3825158.chain_35	3
scaffold_6	skipped_exon	3320407	3320916	-	asmbl_48248	none	blat.proc3825150.chain_3424	1	STRG.7338.1,STRG.7338.3	2
scaffold_8	alt_donor	2662517	2662518	+	asmbl_52729	none	STRG.9808.1,Trinity_GG_22761_c0_g1_i1,blat.proc3825168.chain_2339	3	STRG.9808.2,Trinity_GG_22761_c0_g1_i2,blat.proc3825168.chain_2340	3
scaffold_23	starts_in_intron	6332590	6332590	+	asmbl_31617	none	blat.proc3825176.chain_2909	1	STRG.25988.3,blat.proc3825176.chain_2910,blat.proc3825176.chain_2912	3
scaffold_8	spliced_intron	12693248	12693352	+	asmbl_53327,asmbl_53328,asmbl_53329	none	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3009	3	blat.proc3825168.chain_3010	1
scaffold_4	starts_in_intron	6949173	6949173	+	asmbl_41436	none	Trinity_GG_19782_c0_g1_i4,blat.proc3825166.chain_913	2	STRG.4536.1,STRG.4536.2,STRG.4536.3,Trinity_GG_19782_c0_g1_i2,blat.proc3825166.chain_912	5
scaffold_21	ends_in_intron	6619545	6619545	+	asmbl_28673,asmbl_28674,asmbl_28675,asmbl_28678	none	STRG.24188.1,STRG.24188.2,blat.proc3825176.chain_1434,blat.proc3825176.chain_1435,blat.proc3825176.chain_1436	5	Trinity_GG_30735_c0_g1_i2,blat.proc3825176.chain_1431	2
scaffold_9	alternate_exon	4203548	4203934	+	asmbl_53941,asmbl_53942	none	STRG.11024.2,STRG.11024.3	2	STRG.11024.4,blat.proc3825168.chain_3484,blat.proc3825168.chain_3486	3
scaffold_5	ends_in_intron	5498937	5498937	-	asmbl_44038	none	Trinity_GG_3344_c1_g1_i1,blat.proc3825150.chain_2139	2	STRG.5971.1,blat.proc3825150.chain_2138	2
scaffold_23	starts_in_intron	4119695	4119695	+	asmbl_31485	none	blat.proc3825176.chain_2763	1	STRG.25827.1	1
scaffold_5	retained_intron	10196215	10196313	-	asmbl_44322	none	blat.proc3825150.chain_2528	1	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2527,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531,blat.proc3825150.chain_2533	8
scaffold_21	alt_acceptor	5958486	5958487	-	asmbl_27708,asmbl_27710	none	STRG.24127.1,blat.proc3825160.chain_1286	2	blat.proc3825160.chain_1287	1
scaffold_17	spliced_intron	6390344	6390421	+	asmbl_18851	none	blat.proc3825174.chain_1153	1	Trinity_GG_28437_c1_g1_i2,blat.proc3825174.chain_1152	2
scaffold_4	alt_acceptor	1332589	1332590	-	asmbl_42366,asmbl_42368,asmbl_42370	none	STRG.4173.2,STRG.4173.4,blat.proc3825150.chain_392,blat.proc3825150.chain_393,blat.proc3825150.chain_395	5	STRG.4173.3,blat.proc3825150.chain_394	2
scaffold_7	starts_in_intron	8295364	8295364	-	asmbl_50992	none	blat.proc3825152.chain_1456	1	STRG.9066.1,STRG.9066.2,STRG.9066.3,STRG.9066.4,blat.proc3825152.chain_1452,blat.proc3825152.chain_1453,blat.proc3825152.chain_1454,blat.proc3825152.chain_1457	8
scaffold_14	retained_exon	14147913	14147954	+	asmbl_12523,asmbl_12527	none	STRG.17687.2,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	3	STRG.17687.3	1
scaffold_15	spliced_intron	2564142	2564591	+	asmbl_15063	none	STRG.18045.1,Trinity_GG_27217_c0_g1_i6	2	STRG.18045.4	1
scaffold_5	retained_intron	9092983	9093116	+	asmbl_45610	none	blat.proc3825166.chain_2471	1	STRG.6249.1,blat.proc3825166.chain_2470	2
scaffold_4	retained_exon	7150796	7150899	+	asmbl_41465,asmbl_41466,asmbl_41470,asmbl_41471	none	STRG.4559.2,STRG.4559.5,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	4	STRG.4559.1,STRG.4559.4	2
scaffold_3	alternate_exon	1545706	1546229	+	asmbl_39861	none	STRG.2984.1,Trinity_GG_18944_c0_g1_i4,blat.proc3825164.chain_3127	3	STRG.2984.2,blat.proc3825164.chain_3129	2
scaffold_13	retained_exon	3613390	3613446	-	asmbl_9559	none	blat.proc3825156.chain_566	1	STRG.15680.2,blat.proc3825156.chain_564	2
scaffold_19	alt_donor	12108336	12108337	-	asmbl_22461	none	STRG.22539.4	1	STRG.22539.1,STRG.22539.5,Trinity_GG_12482_c0_g1_i6,blat.proc3825158.chain_3190,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	6
scaffold_731	spliced_intron	2273	2411	+	asmbl_51631	none	STRG.30446.2	1	STRG.30446.1,Trinity_GG_34145_c0_g1_i1,blat.proc3825178.chain_3500	3
scaffold_16	alt_acceptor	787928	787929	+	asmbl_16048,asmbl_16050,asmbl_16051	none	STRG.19056.1,blat.proc3825172.chain_3646,blat.proc3825172.chain_3648,blat.proc3825172.chain_3649	4	STRG.19056.2,blat.proc3825172.chain_3647	2
scaffold_13	alt_acceptor	11379478	11379479	-	asmbl_10087,asmbl_10088	none	STRG.16301.4,blat.proc3825156.chain_1169	2	STRG.16301.1,STRG.16301.2,STRG.16301.3,STRG.16301.5,blat.proc3825156.chain_1170,blat.proc3825156.chain_1172,blat.proc3825156.chain_1173,blat.proc3825156.chain_1174	8
scaffold_10	retained_intron	3732047	3732294	+	asmbl_3067	none	blat.proc3825170.chain_913	1	STRG.12202.1,STRG.12202.2,blat.proc3825170.chain_914,blat.proc3825170.chain_915	4
scaffold_10	spliced_intron	5687438	5687977	+	asmbl_3192	none	STRG.12396.2	1	STRG.12396.1,STRG.12396.3,blat.proc3825170.chain_1001	3
scaffold_6	alt_acceptor	10974650	10974651	+	asmbl_47315	none	STRG.7915.1,Trinity_GG_21653_c0_g1_i2,blat.proc3825168.chain_373	3	Trinity_GG_21653_c0_g1_i3,blat.proc3825168.chain_374	2
scaffold_23	starts_in_intron	6690362	6690362	+	asmbl_31646	none	Trinity_GG_31651_c1_g2_i1,blat.proc3825176.chain_2937	2	Trinity_GG_31651_c1_g1_i5,Trinity_GG_31651_c1_g1_i7,blat.proc3825176.chain_2934,blat.proc3825176.chain_2935,blat.proc3825176.chain_2936	5
scaffold_4	alternate_exon	5578600	5578913	-	asmbl_42611	none	STRG.4456.1,blat.proc3825150.chain_706	2	STRG.4456.2,blat.proc3825150.chain_705	2
scaffold_6	skipped_exon	18047904	18050496	-	asmbl_49224	none	STRG.8487.1,blat.proc3825152.chain_920	2	STRG.8487.2,blat.proc3825152.chain_919	2
scaffold_550	retained_intron	1774	1827	+	asmbl_46561,asmbl_46562	none	STRG.30372.1,STRG.30372.2	2	blat.proc3825178.chain_3461,blat.proc3825178.chain_3462	2
scaffold_13	retained_intron	7217234	7217677	+	asmbl_11022,asmbl_11023,asmbl_11026	none	blat.proc3825172.chain_810,blat.proc3825172.chain_811,blat.proc3825172.chain_815	3	STRG.16019.1,blat.proc3825172.chain_809,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_814,blat.proc3825172.chain_816	6
scaffold_2	ends_in_intron	2790057	2790057	-	asmbl_22919	none	blat.proc3825148.chain_1602	1	STRG.1715.1,STRG.1715.2,blat.proc3825148.chain_1603,blat.proc3825148.chain_1604,blat.proc3825148.chain_1605	5
scaffold_14	retained_intron	3161368	3161770	+	asmbl_11915,asmbl_11916,asmbl_11922,asmbl_11923,asmbl_11924	none	Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	7	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2
scaffold_13	alt_acceptor	8955238	8955239	+	asmbl_11164,asmbl_11167	none	STRG.16167.2,STRG.16167.3,blat.proc3825172.chain_871	3	blat.proc3825172.chain_869	1
scaffold_9	alt_donor	5296039	5296040	+	asmbl_54022,asmbl_54023,asmbl_54025	none	STRG.11112.1,STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6	blat.proc3825168.chain_3571	1
scaffold_25	starts_in_intron	10241219	10241219	-	asmbl_34541	none	Trinity_GG_15592_c0_g1_i4,blat.proc3825162.chain_1144	2	STRG.27817.1	1
scaffold_10	alt_acceptor	16475945	16475946	-	asmbl_5007	none	STRG.13119.4	1	STRG.13119.1,STRG.13119.3	2
scaffold_4	alt_acceptor	12786762	12786763	+	asmbl_41753	none	STRG.4935.1	1	STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365,blat.proc3825166.chain_1369	4
scaffold_5	starts_in_intron	15305368	15305368	+	asmbl_45986,asmbl_45987	none	STRG.6721.2,Trinity_GG_20976_c0_g1_i2,blat.proc3825166.chain_2890	3	STRG.6721.1,Trinity_GG_20976_c0_g1_i1,blat.proc3825166.chain_2889	3
scaffold_9	starts_in_intron	11852170	11852170	-	asmbl_55337	none	blat.proc3825152.chain_3716	1	STRG.11503.1,blat.proc3825152.chain_3714	2
scaffold_10	starts_in_intron	2788532	2788532	-	asmbl_4133,asmbl_4136	none	blat.proc3825154.chain_580,blat.proc3825154.chain_581	2	STRG.12105.1,Trinity_GG_6692_c0_g1_i1,Trinity_GG_6692_c0_g1_i6,blat.proc3825154.chain_582,blat.proc3825154.chain_583,blat.proc3825154.chain_585,blat.proc3825154.chain_586	7
scaffold_7	alt_donor	10339734	10339735	-	asmbl_51118,asmbl_51119,asmbl_51120	none	STRG.9215.1,STRG.9215.2,Trinity_GG_5194_c0_g1_i1,Trinity_GG_5194_c0_g1_i2,blat.proc3825152.chain_1575,blat.proc3825152.chain_1576	6	STRG.9215.3	1
scaffold_14	spliced_intron	15565742	15565795	+	asmbl_12622	none	STRG.17796.2	1	STRG.17796.1,STRG.17796.3,blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	5
scaffold_8	skipped_exon	9373145	9374067	-	asmbl_52027,asmbl_52030	none	STRG.10202.6,blat.proc3825152.chain_2463	2	STRG.10202.3,STRG.10202.4,STRG.10202.5,blat.proc3825152.chain_2461,blat.proc3825152.chain_2464	5
scaffold_10	spliced_intron	378915	379004	-	asmbl_3946,asmbl_3947	none	STRG.11922.1,STRG.11922.3,blat.proc3825154.chain_461	3	STRG.11922.2,Trinity_GG_6631_c0_g1_i1,Trinity_GG_6631_c0_g1_i5,blat.proc3825154.chain_456,blat.proc3825154.chain_460	5
scaffold_14	alternate_exon	14107026	14107084	-	asmbl_13677	none	STRG.17678.1	1	STRG.17678.2,STRG.17678.3	2
scaffold_12	starts_in_intron	13109019	13109019	-	asmbl_8916	none	Trinity_GG_8497_c0_g1_i2,blat.proc3825154.chain_3712,blat.proc3825154.chain_3713	3	STRG.15201.1,STRG.15201.2,Trinity_GG_8497_c0_g1_i3,blat.proc3825154.chain_3714	4
scaffold_17	spliced_intron	8626666	8626834	+	asmbl_19009	none	STRG.20477.1,Trinity_GG_28498_c0_g1_i2,blat.proc3825174.chain_1276	3	STRG.20477.2,Trinity_GG_28498_c0_g1_i1,blat.proc3825174.chain_1274	3
scaffold_20	ends_in_intron	6630767	6630767	-	asmbl_25841	none	blat.proc3825160.chain_343	1	STRG.23240.1,blat.proc3825160.chain_342	2
scaffold_10	alternate_exon	11915808	11915901	-	asmbl_4799	none	STRG.12827.1,blat.proc3825154.chain_1375	2	STRG.12827.2	1
scaffold_24	starts_in_intron	4293515	4293515	+	asmbl_32181	none	Trinity_GG_32015_c2_g1_i1,blat.proc3825176.chain_3541	2	STRG.26591.1,blat.proc3825176.chain_3538,blat.proc3825176.chain_3539	3
scaffold_11	retained_exon	8601136	8601306	+	asmbl_5806,asmbl_5808,asmbl_5811	none	STRG.13876.1,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2449	6	STRG.13876.3	1
scaffold_72	alt_donor	17062	17063	+	asmbl_51615	none	STRG.30111.2	1	STRG.30111.1	1
scaffold_24	spliced_intron	1035334	1035594	+	asmbl_32060	none	STRG.26378.1,blat.proc3825176.chain_3370	2	blat.proc3825176.chain_3371	1
scaffold_12	alt_acceptor	11951802	11951803	-	asmbl_8838	none	STRG.15111.2	1	STRG.15111.1	1
scaffold_8	retained_intron	5433842	5433940	+	asmbl_52886	none	blat.proc3825168.chain_2431	1	STRG.9974.1,STRG.9974.2,blat.proc3825168.chain_2430,blat.proc3825168.chain_2432	4
scaffold_18	spliced_intron	11328837	11329142	+	asmbl_20940,asmbl_20942,asmbl_20943	none	STRG.21676.1,STRG.21676.2,blat.proc3825174.chain_2683,blat.proc3825174.chain_2691	4	blat.proc3825174.chain_2686	1
scaffold_16	starts_in_intron	10448835	10448835	+	asmbl_16537	none	Trinity_GG_28027_c0_g1_i3,blat.proc3825174.chain_485	2	STRG.19614.2,STRG.19614.4,blat.proc3825174.chain_484	3
scaffold_1	alt_donor	14429201	14429202	+	asmbl_2395,asmbl_2396	none	STRG.1046.1,STRG.1046.2	2	STRG.1046.3,blat.proc3825164.chain_1218,blat.proc3825164.chain_1219,blat.proc3825164.chain_1220	4
scaffold_7	spliced_intron	12455195	12455507	-	asmbl_51232,asmbl_51233,asmbl_51234,asmbl_51235	none	STRG.9354.1,STRG.9354.2,STRG.9354.3,STRG.9354.4	4	Trinity_GG_5252_c0_g1_i20	1
scaffold_8	spliced_intron	7805215	7805311	-	asmbl_51924,asmbl_51925,asmbl_51927	none	STRG.10100.1,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316	4	blat.proc3825152.chain_2313,blat.proc3825152.chain_2318	2
scaffold_25	alt_acceptor	2089169	2089170	-	asmbl_34059	none	STRG.27219.2	1	STRG.27219.1,blat.proc3825162.chain_615	2
scaffold_18	alt_acceptor	4768994	4768995	+	asmbl_20559	none	STRG.21273.2	1	STRG.21273.4	1
scaffold_18	alternate_exon	12935462	12935608	+	asmbl_20980	none	STRG.21740.2	1	blat.proc3825158.chain_2618	1
scaffold_1	alt_acceptor	12050647	12050648	-	asmbl_680,asmbl_681	none	STRG.817.2,STRG.817.3	2	STRG.817.1,blat.proc3825148.chain_752,blat.proc3825148.chain_753	3
scaffold_4	spliced_intron	17032148	17032361	+	asmbl_42020,asmbl_42021	none	STRG.5301.2,STRG.5301.3,blat.proc3825166.chain_1654	3	blat.proc3825166.chain_1653	1
scaffold_14	alt_acceptor	5951218	5951219	+	asmbl_12045	none	STRG.17068.2	1	STRG.17068.1,blat.proc3825172.chain_1819	2
scaffold_13	alt_acceptor	4244432	4244433	-	asmbl_9610,asmbl_9614,asmbl_9617	none	STRG.15752.1,STRG.15752.4,blat.proc3825156.chain_589,blat.proc3825156.chain_592	4	STRG.15752.3,STRG.15752.5,blat.proc3825156.chain_590,blat.proc3825156.chain_591	4
scaffold_24	skipped_exon	4280610	4281152	+	asmbl_32177	none	STRG.26586.1,blat.proc3825176.chain_3529	2	STRG.26586.2,STRG.26586.3,blat.proc3825176.chain_3528	3
scaffold_7	spliced_intron	13198531	13198748	-	asmbl_51295,asmbl_51297,asmbl_51300	none	STRG.9431.1,blat.proc3825152.chain_1782,blat.proc3825152.chain_1783,blat.proc3825152.chain_1788	4	blat.proc3825152.chain_1785,blat.proc3825152.chain_1787,blat.proc3825152.chain_1789	3
scaffold_1	alt_acceptor	10949744	10949745	+	asmbl_2039	none	blat.proc3825164.chain_859	1	STRG.715.1,blat.proc3825164.chain_858	2
scaffold_11	alt_donor	15668786	15668787	-	asmbl_7207	none	STRG.14305.2,blat.proc3825154.chain_2854	2	STRG.14305.1,blat.proc3825154.chain_2853	2
scaffold_22	alternate_exon	6156680	6156734	-	asmbl_29310,asmbl_29312	none	STRG.24977.1,STRG.24977.2,blat.proc3825160.chain_2106	3	STRG.24977.3	1
scaffold_17	starts_in_intron	5083741	5083741	-	asmbl_17910	none	Trinity_GG_11379_c0_g1_i3	1	STRG.20236.1	1
scaffold_17	alt_acceptor	1447725	1447726	-	asmbl_17715	none	blat.proc3825158.chain_1047	1	STRG.19986.1	1
scaffold_13	retained_exon	13974489	13974623	+	asmbl_11416	none	blat.proc3825172.chain_1173	1	blat.proc3825172.chain_1172	1
scaffold_4	alternate_exon	16650275	16661305	+	asmbl_41994	none	STRG.5252.2	1	Trinity_GG_20222_c0_g1_i3,blat.proc3825166.chain_1601	2
scaffold_24	starts_in_intron	2963249	2963249	-	asmbl_32807	none	blat.proc3825160.chain_3587	1	STRG.26507.1,blat.proc3825160.chain_3584,blat.proc3825160.chain_3585	3
scaffold_2	alt_acceptor	15656463	15656464	-	asmbl_23648	none	STRG.2520.2,blat.proc3825148.chain_2472	2	STRG.2520.1	1
scaffold_17	retained_exon	2355383	2356400	+	asmbl_18638	none	STRG.20030.4	1	blat.proc3825174.chain_909	1
scaffold_15	starts_in_intron	387284	387284	+	asmbl_14969	none	blat.proc3825172.chain_2622	1	STRG.17895.1,STRG.17895.2,Trinity_GG_27148_c0_g1_i4,blat.proc3825172.chain_2624,blat.proc3825172.chain_2625	5
scaffold_10	starts_in_intron	2663667	2663667	-	asmbl_4114	none	blat.proc3825154.chain_639	1	STRG.12081.1,blat.proc3825154.chain_637	2
scaffold_3	alt_donor	14189187	14189188	-	asmbl_39330,asmbl_39334,asmbl_39335	none	STRG.3761.2,blat.proc3825148.chain_3664,blat.proc3825148.chain_3666,blat.proc3825148.chain_3668	4	STRG.3761.4	1
scaffold_8	starts_in_intron	16233379	16233379	+	asmbl_53440	none	blat.proc3825168.chain_3189	1	STRG.10614.1,STRG.10614.2,STRG.10614.3,Trinity_GG_23224_c0_g1_i2,Trinity_GG_23224_c0_g1_i4,blat.proc3825168.chain_3188,blat.proc3825168.chain_3190	7
scaffold_23	alternate_exon	806025	806132	-	asmbl_30612	none	blat.proc3825160.chain_2754	1	STRG.25583.1,STRG.25583.2	2
scaffold_17	alt_acceptor	11334982	11334983	+	asmbl_19219	none	STRG.20686.1	1	STRG.20686.2	1
scaffold_15	alt_donor	6793982	6793983	+	asmbl_15263,asmbl_15264	none	STRG.18296.2,STRG.18296.3,Trinity_GG_27307_c0_g1_i1,blat.proc3825172.chain_2910	4	STRG.18296.1,Trinity_GG_27307_c0_g1_i2,blat.proc3825172.chain_2911	3
scaffold_13	ends_in_intron	4461946	4461946	-	asmbl_9632	none	Trinity_GG_8857_c1_g1_i1,blat.proc3825156.chain_637	2	STRG.15771.1	1
scaffold_13	retained_intron	6950776	6951100	-	asmbl_9818	none	STRG.15984.1,Trinity_GG_8951_c0_g1_i5	2	STRG.15984.2,STRG.15984.3,STRG.15984.5,STRG.15984.6	4
scaffold_5	alternate_exon	6325521	6325653	+	asmbl_45422	none	STRG.6044.1	1	STRG.6044.3	1
scaffold_9	skipped_exon	16564755	16566225	-	asmbl_55587	none	Trinity_GG_6524_c0_g1_i13,blat.proc3825154.chain_265	2	STRG.11806.3,STRG.11806.4,STRG.11806.5,STRG.11806.6,Trinity_GG_6524_c0_g1_i10,Trinity_GG_6524_c0_g1_i4,blat.proc3825154.chain_268,blat.proc3825154.chain_269	8
scaffold_5	retained_exon	4628791	4628841	-	asmbl_43965	none	STRG.5917.1,blat.proc3825150.chain_2105	2	STRG.5917.2,blat.proc3825150.chain_2104	2
scaffold_27	alt_donor	6268577	6268578	-	asmbl_37049	none	STRG.29018.1,blat.proc3825162.chain_2245	2	STRG.29018.2	1
scaffold_2	alt_acceptor	7407089	7407090	-	asmbl_23251,asmbl_23252,asmbl_23253,asmbl_23254,asmbl_23255,asmbl_23258,asmbl_23259	none	STRG.2065.1,STRG.2065.3,STRG.2065.4,STRG.2065.6,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i4,Trinity_GG_1101_c0_g1_i5,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1982,blat.proc3825148.chain_1983,blat.proc3825148.chain_1984,blat.proc3825148.chain_1985,blat.proc3825148.chain_1986	13	STRG.2065.5	1
scaffold_1	spliced_intron	14521611	14522141	-	asmbl_929,asmbl_930	none	STRG.1050.1,STRG.1050.4,blat.proc3825148.chain_1051,blat.proc3825148.chain_1052	4	STRG.1050.2,STRG.1050.3,Trinity_GG_552_c0_g1_i2,blat.proc3825148.chain_1053,blat.proc3825148.chain_1054	5
scaffold_27	retained_exon	1774784	1775049	+	asmbl_36038	none	STRG.28669.1	1	Trinity_GG_33182_c0_g1_i1,Trinity_GG_33182_c0_g1_i2	2
scaffold_13	starts_in_intron	5712490	5712490	-	asmbl_9714	none	STRG.15881.3	1	STRG.15881.1,STRG.15881.2,STRG.15881.4,blat.proc3825156.chain_726,blat.proc3825156.chain_727,blat.proc3825156.chain_730,blat.proc3825156.chain_731,blat.proc3825156.chain_732	8
scaffold_14	retained_exon	11688176	11688278	-	asmbl_13521,asmbl_13522,asmbl_13523	none	STRG.17516.1,STRG.17516.2,blat.proc3825156.chain_2313,blat.proc3825156.chain_2315,blat.proc3825156.chain_2316	5	STRG.17516.3	1
scaffold_4	retained_exon	4414044	4414706	+	asmbl_41245	none	STRG.4349.4,Trinity_GG_19749_c0_g1_i14,blat.proc3825166.chain_849	3	STRG.4349.3,blat.proc3825166.chain_843	2
scaffold_10	retained_intron	7282966	7283052	-	asmbl_4544	none	blat.proc3825154.chain_1130	1	STRG.12546.1,STRG.12546.3,Trinity_GG_7012_c0_g1_i1,blat.proc3825154.chain_1128,blat.proc3825154.chain_1129	5
scaffold_23	starts_in_intron	9470988	9470988	-	asmbl_31098	none	blat.proc3825160.chain_3331	1	STRG.26170.1,blat.proc3825160.chain_3333	2
scaffold_5	alt_donor	5847284	5847285	-	asmbl_44062	none	STRG.5999.2	1	STRG.5999.1	1
scaffold_17	retained_intron	6975317	6976246	-	asmbl_18014	none	STRG.20360.2,blat.proc3825158.chain_1412	2	STRG.20360.1,blat.proc3825158.chain_1411,blat.proc3825158.chain_1413	3
scaffold_5	retained_intron	10170961	10171274	+	asmbl_45666	none	blat.proc3825166.chain_2513	1	blat.proc3825166.chain_2511	1
scaffold_2	alt_donor	15455005	15455006	+	asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25041,asmbl_25043,asmbl_25044	none	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809,blat.proc3825164.chain_2811,blat.proc3825164.chain_2812	9	blat.proc3825164.chain_2805,blat.proc3825164.chain_2810	2
scaffold_1	starts_in_intron	12976086	12976086	+	asmbl_2292	none	blat.proc3825164.chain_1042	1	STRG.935.1,blat.proc3825164.chain_1044,blat.proc3825164.chain_1045,blat.proc3825164.chain_1047	4
scaffold_15	retained_intron	15857572	15857984	+	asmbl_15824,asmbl_15826	none	Trinity_GG_27688_c0_g1_i10,blat.proc3825172.chain_3573,blat.proc3825172.chain_3578	3	STRG.18973.1,STRG.18973.2,STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i5,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3568,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575,blat.proc3825172.chain_3576,blat.proc3825172.chain_3577	15
scaffold_22	spliced_intron	484303	485440	+	asmbl_29854	none	STRG.24694.1,Trinity_GG_30924_c0_g1_i3,blat.proc3825176.chain_1751	3	blat.proc3825176.chain_1750	1
scaffold_1	alt_acceptor	4273762	4273763	+	asmbl_1658,asmbl_1659,asmbl_1661	none	STRG.261.1,STRG.261.2,STRG.261.4,blat.proc3825164.chain_398	4	STRG.261.3	1
scaffold_22	alt_acceptor	10894920	10894921	-	asmbl_29628,asmbl_29629	none	STRG.25430.1,STRG.25430.2,blat.proc3825160.chain_2594,blat.proc3825160.chain_2595	4	STRG.25430.3	1
scaffold_11	starts_in_intron	8707214	8707214	-	asmbl_6867	none	Trinity_GG_7758_c1_g1_i2,blat.proc3825154.chain_2425	2	STRG.13900.1,STRG.13900.2,Trinity_GG_7758_c1_g1_i1,blat.proc3825154.chain_2424	4
scaffold_13	ends_in_intron	5878096	5878096	+	asmbl_10909	none	blat.proc3825172.chain_645	1	STRG.15898.1,blat.proc3825172.chain_644	2
scaffold_28	retained_intron	5391382	5391483	+	asmbl_37584	none	STRG.29687.4	1	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868,blat.proc3825178.chain_2869	6
scaffold_12	alt_acceptor	7421157	7421158	-	asmbl_8587	none	blat.proc3825154.chain_3340	1	STRG.14825.1,STRG.14825.2,STRG.14825.3,blat.proc3825154.chain_3339,blat.proc3825154.chain_3341	5
scaffold_13	starts_in_intron	3247116	3247116	+	asmbl_10672	none	Trinity_GG_25915_c0_g1_i3,blat.proc3825172.chain_408	2	STRG.15630.1,STRG.15630.2,blat.proc3825172.chain_406	3
scaffold_11	retained_intron	11941482	11941526	-	asmbl_7043	none	STRG.14177.3	1	STRG.14177.4	1
scaffold_1	ends_in_intron	14323513	14323513	+	asmbl_2381	none	blat.proc3825164.chain_1222	1	STRG.1027.1,STRG.1027.2,blat.proc3825164.chain_1223,blat.proc3825164.chain_1225,blat.proc3825164.chain_1226	5
scaffold_3	starts_in_intron	4287395	4287395	+	asmbl_39997	none	STRG.3135.3	1	STRG.3135.1	1
scaffold_23	alt_donor	7998193	7998194	+	asmbl_31749	none	STRG.26113.2	1	STRG.26113.1	1
scaffold_8	retained_intron	6159495	6159934	-	asmbl_51861,asmbl_51865,asmbl_51866,asmbl_51867,asmbl_51869,asmbl_51870	none	STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2276	7	STRG.10030.1,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275	3
scaffold_11	alt_acceptor	8024104	8024105	+	asmbl_5707	none	STRG.13807.2	1	STRG.13807.1,Trinity_GG_24919_c0_g1_i1,blat.proc3825170.chain_2355	3
scaffold_4	spliced_intron	7346985	7347256	-	asmbl_42709	none	STRG.4567.1,blat.proc3825150.chain_813	2	Trinity_GG_2565_c1_g1_i2,blat.proc3825150.chain_814	2
scaffold_6	alternate_exon	14471773	14471956	-	asmbl_49009	none	STRG.8209.2,Trinity_GG_4640_c0_g1_i2,blat.proc3825152.chain_582	3	STRG.8209.3	1
scaffold_27	ends_in_intron	2873378	2873378	+	asmbl_36138	none	Trinity_GG_33237_c0_g1_i5,blat.proc3825178.chain_1948	2	STRG.28770.1,STRG.28770.2,Trinity_GG_33237_c0_g1_i1,blat.proc3825178.chain_1947,blat.proc3825178.chain_1951	5
scaffold_19	retained_intron	13001384	13001875	+	asmbl_21834	none	Trinity_GG_29813_c0_g1_i2,blat.proc3825174.chain_3633	2	Trinity_GG_29813_c0_g1_i1,blat.proc3825174.chain_3632	2
scaffold_3	alternate_exon	6077915	6078434	-	asmbl_38897	none	Trinity_GG_1775_c0_g1_i5,blat.proc3825148.chain_3129	2	STRG.3258.1,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131	3
scaffold_26	ends_in_intron	4820278	4820278	+	asmbl_34929,asmbl_34931	none	STRG.28202.2,blat.proc3825178.chain_1222	2	STRG.28202.1,blat.proc3825178.chain_1219,blat.proc3825178.chain_1220,blat.proc3825178.chain_1221	4
scaffold_21	alternate_exon	10008163	10008252	-	asmbl_28002	none	blat.proc3825160.chain_1645	1	STRG.24464.1,blat.proc3825160.chain_1644	2
scaffold_17	skipped_exon	12169998	12172330	+	asmbl_19270	none	STRG.20748.1,blat.proc3825174.chain_1595	2	STRG.20748.2,Trinity_GG_28669_c0_g1_i1,blat.proc3825174.chain_1594	3
scaffold_22	retained_intron	6991765	6991914	+	asmbl_30145	none	STRG.25025.2,Trinity_GG_31123_c0_g1_i4,blat.proc3825176.chain_2085,blat.proc3825176.chain_2086	4	blat.proc3825176.chain_2084	1
scaffold_2	alt_acceptor	14392463	14392464	+	asmbl_24927,asmbl_24928	none	STRG.2440.1,STRG.2440.3,blat.proc3825164.chain_2694,blat.proc3825164.chain_2695,blat.proc3825164.chain_2697	5	STRG.2440.2,blat.proc3825164.chain_2696	2
scaffold_16	alternate_exon	1476731	1476763	+	asmbl_16076	none	STRG.19089.2,blat.proc3825172.chain_3739	2	STRG.19089.1,blat.proc3825172.chain_3740	2
scaffold_11	ends_in_intron	176712	176712	+	asmbl_5264,asmbl_5265	none	blat.proc3825170.chain_1809,blat.proc3825170.chain_1812	2	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1810,blat.proc3825170.chain_1811,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	6
scaffold_23	spliced_intron	3510274	3510858	-	asmbl_30802,asmbl_30805	none	STRG.25774.1,blat.proc3825160.chain_2975,blat.proc3825160.chain_2979	3	STRG.25774.2,Trinity_GG_14435_c0_g1_i1,blat.proc3825160.chain_2973,blat.proc3825160.chain_2978	4
scaffold_12	retained_intron	12307824	12309134	+	asmbl_7983	none	STRG.15133.3,Trinity_GG_25650_c0_g1_i1,blat.proc3825170.chain_3642	3	STRG.15133.4,blat.proc3825170.chain_3641	2
scaffold_6	alternate_exon	6922333	6922719	-	asmbl_48470,asmbl_48472	none	STRG.7597.2,STRG.7597.3,blat.proc3825152.chain_6	3	STRG.7597.1,blat.proc3825152.chain_5	2
scaffold_10	alt_donor	7275847	7275848	+	asmbl_3274,asmbl_3275	none	STRG.12540.4,blat.proc3825170.chain_1150	2	STRG.12540.1,STRG.12540.2,STRG.12540.3,blat.proc3825170.chain_1145,blat.proc3825170.chain_1147,blat.proc3825170.chain_1148,blat.proc3825170.chain_1149	7
scaffold_24	retained_exon	9592962	9593059	-	asmbl_33138	none	STRG.26947.3	1	STRG.26947.2	1
scaffold_20	alternate_exon	5481292	5486032	-	asmbl_25763	none	STRG.23173.1,blat.proc3825160.chain_254	2	STRG.23173.2,Trinity_GG_12928_c0_g1_i3,blat.proc3825160.chain_253	3
scaffold_3	retained_intron	19885475	19886383	-	asmbl_39669	none	STRG.4100.3,Trinity_GG_2243_c1_g1_i2,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_245,blat.proc3825150.chain_248	5	STRG.4100.1,STRG.4100.4,Trinity_GG_2243_c1_g1_i1,blat.proc3825150.chain_246	4
scaffold_1	retained_intron	9294832	9294940	+	asmbl_1976	none	STRG.629.2	1	STRG.629.1,Trinity_GG_17708_c0_g1_i1,Trinity_GG_17708_c0_g1_i2,Trinity_GG_17708_c0_g1_i5,blat.proc3825164.chain_768,blat.proc3825164.chain_770,blat.proc3825164.chain_771	7
scaffold_11	skipped_exon	6063224	6064807	+	asmbl_5605	none	STRG.13670.1,blat.proc3825170.chain_2149	2	blat.proc3825170.chain_2148	1
scaffold_5	starts_in_intron	12914571	12914571	-	asmbl_44494	none	blat.proc3825150.chain_2708	1	STRG.6524.1,STRG.6524.2,blat.proc3825150.chain_2709,blat.proc3825150.chain_2710,blat.proc3825150.chain_2711,blat.proc3825150.chain_2713	6
scaffold_9	spliced_intron	8180579	8180907	+	asmbl_54158	none	STRG.11248.3	1	STRG.11248.1,STRG.11248.2,Trinity_GG_23577_c0_g1_i1,blat.proc3825170.chain_17,blat.proc3825170.chain_19	5
scaffold_19	alternate_exon	13141475	13142652	+	asmbl_21853	none	STRG.22633.2,blat.proc3825174.chain_3653	2	STRG.22633.3	1
scaffold_15	ends_in_intron	5383894	5383894	-	asmbl_14206	none	blat.proc3825156.chain_3037	1	STRG.18228.1,blat.proc3825156.chain_3038	2
scaffold_22	alternate_exon	231355	231632	-	asmbl_29076	none	STRG.24683.4	1	STRG.24683.2,STRG.24683.3,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	4
scaffold_16	alternate_exon	8589188	8592471	+	asmbl_16416,asmbl_16419,asmbl_16420,asmbl_16421,asmbl_16422,asmbl_16424	none	STRG.19490.1,STRG.19490.2,STRG.19490.3,STRG.19490.7,blat.proc3825174.chain_372,blat.proc3825174.chain_373,blat.proc3825174.chain_375	7	STRG.19490.6	1
scaffold_10	retained_intron	6071958	6072084	-	asmbl_4424,asmbl_4428	none	Trinity_GG_6960_c0_g1_i3,blat.proc3825154.chain_1030,blat.proc3825154.chain_1031	3	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1028,blat.proc3825154.chain_1029,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033,blat.proc3825154.chain_1034	10
scaffold_15	alt_acceptor	13847926	13847927	-	asmbl_14680	none	STRG.18815.1	1	STRG.18815.2	1
scaffold_8	skipped_exon	8739454	8740005	+	asmbl_53032	none	Trinity_GG_22945_c0_g1_i2,blat.proc3825168.chain_2690	2	Trinity_GG_22945_c0_g1_i1,blat.proc3825168.chain_2689	2
scaffold_11	ends_in_intron	17382443	17382443	-	asmbl_7270	none	blat.proc3825154.chain_2894	1	STRG.14397.1,STRG.14397.2,blat.proc3825154.chain_2896	3
scaffold_19	spliced_intron	5464093	5464178	+	asmbl_21373,asmbl_21377,asmbl_21378	none	STRG.22117.1,blat.proc3825174.chain_3157,blat.proc3825174.chain_3160,blat.proc3825174.chain_3161	4	STRG.22117.4,blat.proc3825174.chain_3158	2
scaffold_5	alt_acceptor	5046459	5046460	+	asmbl_45326,asmbl_45331	none	STRG.5958.1,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126	3	STRG.5958.2,STRG.5958.3,blat.proc3825166.chain_2127,blat.proc3825166.chain_2129	4
scaffold_4	starts_in_intron	14954093	14954093	+	asmbl_41906	none	Trinity_GG_20171_c0_g1_i3,blat.proc3825166.chain_1518	2	STRG.5103.4	1
scaffold_3	spliced_intron	12627468	12627566	-	asmbl_39218	none	STRG.3656.1,blat.proc3825148.chain_3460	2	STRG.3656.2,blat.proc3825148.chain_3459	2
scaffold_11	retained_exon	8898170	8898282	-	asmbl_6883	none	STRG.13911.2	1	STRG.13911.1	1
scaffold_21	retained_intron	7367729	7367814	-	asmbl_27802,asmbl_27803	none	blat.proc3825160.chain_1407,blat.proc3825160.chain_1408	2	STRG.24259.1,Trinity_GG_13537_c0_g1_i2,blat.proc3825160.chain_1409,blat.proc3825160.chain_1410	4
scaffold_1	spliced_intron	7370155	7370238	-	asmbl_432	none	STRG.528.3,blat.proc3825148.chain_515	2	STRG.528.1,STRG.528.2,STRG.528.4,STRG.528.5	4
scaffold_7	spliced_intron	11412972	11413205	+	asmbl_50173	none	STRG.9288.1,Trinity_GG_22465_c0_g1_i2,blat.proc3825168.chain_1792	3	blat.proc3825168.chain_1793	1
scaffold_18	alt_acceptor	1860142	1860143	+	asmbl_20383	none	STRG.21073.2,blat.proc3825174.chain_1970	2	STRG.21073.1,blat.proc3825174.chain_1971	2
scaffold_10	alt_acceptor	6052476	6052477	+	asmbl_3221,asmbl_3227	none	STRG.12435.1,blat.proc3825170.chain_1067,blat.proc3825170.chain_1069	3	STRG.12435.3,STRG.12435.4	2
scaffold_27	retained_intron	3000478	3000572	+	asmbl_36151,asmbl_36154,asmbl_36160	none	STRG.28786.2,STRG.28786.3,blat.proc3825178.chain_1901,blat.proc3825178.chain_1906	4	STRG.28786.1,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	6
scaffold_7	alt_acceptor	9857491	9857492	-	asmbl_51093	none	STRG.9189.2,blat.proc3825152.chain_1467	2	STRG.9189.1,blat.proc3825152.chain_1466,blat.proc3825152.chain_1468,blat.proc3825152.chain_1469	4
scaffold_2	spliced_intron	8055440	8055626	-	asmbl_23304	none	STRG.2094.1,blat.proc3825148.chain_2121	2	STRG.2094.4,blat.proc3825148.chain_2118	2
scaffold_26	alt_donor	2926959	2926960	+	asmbl_34758	none	STRG.27977.1,Trinity_GG_32743_c0_g1_i1,blat.proc3825178.chain_1025	3	STRG.27977.2	1
scaffold_1	retained_intron	19006360	19006412	+	asmbl_2572	none	STRG.1324.4	1	STRG.1324.1	1
scaffold_18	ends_in_intron	7036878	7036878	-	asmbl_19923	none	blat.proc3825158.chain_2336	1	STRG.21414.1,STRG.21414.2,blat.proc3825158.chain_2337	3
scaffold_5	starts_in_intron	14731389	14731389	-	asmbl_44615	none	blat.proc3825150.chain_2847	1	STRG.6676.1,blat.proc3825150.chain_2844,blat.proc3825150.chain_2845	3
scaffold_2	retained_intron	16414060	16414370	-	asmbl_23689,asmbl_23694	none	STRG.2587.3,blat.proc3825148.chain_2557	2	STRG.2587.2	1
scaffold_19	retained_exon	5643934	5644042	-	asmbl_22183	none	blat.proc3825158.chain_2907	1	blat.proc3825158.chain_2906	1
scaffold_3	ends_in_intron	15925976	15925976	-	asmbl_39461	none	blat.proc3825148.chain_3693	1	STRG.3873.1,blat.proc3825148.chain_3694,blat.proc3825148.chain_3697	3
scaffold_4	ends_in_intron	5198837	5198837	+	asmbl_41341	none	blat.proc3825166.chain_886	1	STRG.4414.1,blat.proc3825166.chain_885	2
scaffold_8	retained_intron	9904299	9904378	-	asmbl_52066	none	Trinity_GG_5719_c0_g1_i2,blat.proc3825152.chain_2527	2	STRG.10243.1,STRG.10243.2,blat.proc3825152.chain_2525,blat.proc3825152.chain_2526	4
scaffold_4	skipped_exon	7266733	7267957	+	asmbl_41481	none	STRG.4561.2,Trinity_GG_19860_c0_g1_i1,blat.proc3825166.chain_1050	3	STRG.4561.5,STRG.4561.6,Trinity_GG_19860_c0_g1_i3,blat.proc3825166.chain_1049	4
scaffold_20	alternate_exon	1568918	1569256	-	asmbl_25586	none	STRG.22884.1,blat.proc3825160.chain_6	2	STRG.22884.3,blat.proc3825160.chain_5	2
scaffold_12	alt_acceptor	6420532	6420533	+	asmbl_7685	none	blat.proc3825170.chain_3272	1	STRG.14753.1,STRG.14753.2,STRG.14753.3,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274,blat.proc3825170.chain_3275	6
scaffold_10	alt_acceptor	9344980	9344981	-	asmbl_4686	none	STRG.12672.3	1	STRG.12672.1,STRG.12672.2,Trinity_GG_7075_c0_g1_i1,blat.proc3825154.chain_1279	4
scaffold_5	alternate_exon	8763954	8764281	-	asmbl_44236	none	STRG.6212.2,Trinity_GG_3495_c0_g1_i1,blat.proc3825150.chain_2407	3	STRG.6212.1,Trinity_GG_3495_c0_g1_i4,blat.proc3825150.chain_2408	3
scaffold_2	retained_exon	483027	483134	-	asmbl_22802,asmbl_22806	none	STRG.1532.1,STRG.1532.2,blat.proc3825148.chain_1467	3	STRG.1532.3	1
scaffold_24	alternate_exon	4375882	4376716	+	asmbl_32198	none	blat.proc3825176.chain_3482	1	STRG.26598.2	1
scaffold_10	alt_acceptor	9102064	9102065	-	asmbl_4681	none	STRG.12661.1	1	STRG.12661.2,blat.proc3825154.chain_1195	2
scaffold_15	spliced_intron	389143	389240	+	asmbl_14971,asmbl_14972,asmbl_14973	none	STRG.17895.2,blat.proc3825172.chain_2619,blat.proc3825172.chain_2620,blat.proc3825172.chain_2621	4	STRG.17895.1,blat.proc3825172.chain_2622,blat.proc3825172.chain_2623,blat.proc3825172.chain_2625	4
scaffold_11	starts_in_intron	8103473	8103473	+	asmbl_5734	none	blat.proc3825170.chain_2350	1	STRG.13823.1,STRG.13823.2,STRG.13823.3,STRG.13823.4,Trinity_GG_24917_c1_g1_i8,blat.proc3825170.chain_2349,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352,blat.proc3825170.chain_2353	9
scaffold_11	spliced_intron	7091036	7091125	+	asmbl_5657	none	STRG.13738.1,blat.proc3825170.chain_2275	2	blat.proc3825170.chain_2276	1
scaffold_6	spliced_intron	17186531	17186619	-	asmbl_49180,asmbl_49181	none	STRG.8430.1,STRG.8430.2,Trinity_GG_4809_c0_g1_i1,Trinity_GG_4809_c0_g1_i2,blat.proc3825152.chain_868,blat.proc3825152.chain_870	6	Trinity_GG_4809_c0_g1_i3,blat.proc3825152.chain_869	2
scaffold_7	skipped_exon	4930791	4933377	+	asmbl_49777	none	STRG.8852.3	1	STRG.8852.2,blat.proc3825168.chain_1347	2
scaffold_4	ends_in_intron	15355644	15355644	+	asmbl_41944	none	STRG.5126.1,blat.proc3825166.chain_1559	2	STRG.5126.2,blat.proc3825166.chain_1558	2
scaffold_12	retained_intron	7113789	7113837	+	asmbl_7713,asmbl_7715	none	STRG.14780.1,blat.proc3825170.chain_3297,blat.proc3825170.chain_3298	3	blat.proc3825170.chain_3296	1
scaffold_16	retained_intron	14510973	14511105	-	asmbl_17446	none	Trinity_GG_11122_c0_g1_i3,blat.proc3825158.chain_878	2	STRG.19830.1,blat.proc3825158.chain_874,blat.proc3825158.chain_875,blat.proc3825158.chain_877	4
scaffold_24	retained_intron	8736585	8736696	-	asmbl_33096	none	Trinity_GG_15007_c0_g1_i6,blat.proc3825162.chain_185	2	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_184	4
scaffold_10	starts_in_intron	16476114	16476114	-	asmbl_5005	none	blat.proc3825154.chain_1717	1	STRG.13119.1,STRG.13119.2,STRG.13119.3,STRG.13119.4	4
scaffold_11	alternate_exon	12759563	12760009	-	asmbl_7100	none	STRG.14168.1,blat.proc3825154.chain_2716	2	STRG.14168.2,blat.proc3825154.chain_2717	2
scaffold_13	spliced_intron	2568046	2569763	+	asmbl_10624,asmbl_10625	none	STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_325	5	STRG.15563.1,STRG.15563.2,blat.proc3825172.chain_323,blat.proc3825172.chain_324,blat.proc3825172.chain_327	5
scaffold_4	alt_acceptor	19539841	19539842	-	asmbl_43450	none	blat.proc3825150.chain_1720	1	STRG.5541.3	1
scaffold_10	starts_in_intron	6876895	6876895	-	asmbl_4513	none	blat.proc3825154.chain_1110	1	STRG.12509.1,blat.proc3825154.chain_1111	2
scaffold_12	retained_intron	5452318	5452775	-	asmbl_8495	none	STRG.14701.1	1	STRG.14701.2	1
scaffold_5	spliced_intron	14569065	14569227	-	asmbl_44601	none	STRG.6658.2	1	blat.proc3825150.chain_2783,blat.proc3825150.chain_2784	2
scaffold_15	starts_in_intron	4805201	4805201	-	asmbl_14162	none	blat.proc3825156.chain_2935	1	STRG.18196.1,blat.proc3825156.chain_2934	2
scaffold_15	alt_donor	6783961	6783962	-	asmbl_14254	none	blat.proc3825156.chain_3127	1	STRG.18297.1,blat.proc3825156.chain_3128	2
scaffold_6	retained_intron	15944850	15945070	+	asmbl_47679	none	STRG.8324.1	1	STRG.8324.2	1
scaffold_20	alt_donor	9185074	9185075	+	asmbl_26840	none	STRG.23464.1,blat.proc3825176.chain_621	2	blat.proc3825160.chain_530,blat.proc3825176.chain_622	2
scaffold_9	skipped_exon	16687742	16690662	-	asmbl_55615	none	blat.proc3825154.chain_263	1	STRG.11816.1,blat.proc3825154.chain_262	2
scaffold_5	alt_donor	16203092	16203093	-	asmbl_44748	none	STRG.6805.1	1	blat.proc3825150.chain_3001	1
scaffold_19	alt_acceptor	1038593	1038594	+	asmbl_21229	none	STRG.21896.2	1	STRG.21896.1,blat.proc3825174.chain_2871	2
scaffold_12	alt_donor	10188435	10188436	-	asmbl_8732	none	STRG.14994.2,blat.proc3825154.chain_3517	2	STRG.14994.1,STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516,blat.proc3825154.chain_3518,blat.proc3825154.chain_3520	8
scaffold_3	starts_in_intron	14763306	14763306	-	asmbl_39416	none	STRG.3820.1	1	STRG.3820.2,STRG.3820.3	2
scaffold_5	spliced_intron	6737990	6738085	-	asmbl_44138	none	STRG.6083.1	1	Trinity_GG_3371_c0_g1_i2,blat.proc3825150.chain_2194	2
scaffold_10	alternate_exon	7606109	7608881	-	asmbl_4545	none	STRG.12553.1,STRG.12553.3,Trinity_GG_7011_c1_g1_i1,Trinity_GG_7011_c2_g1_i1,blat.proc3825154.chain_1069,blat.proc3825154.chain_1125,blat.proc3825154.chain_1126,blat.proc3825154.chain_1127	8	STRG.12553.2,blat.proc3825154.chain_1070	2
scaffold_18	alt_donor	4074374	4074375	+	asmbl_20491,asmbl_20493	none	STRG.21207.3,STRG.21207.4	2	STRG.21207.1,STRG.21207.2	2
scaffold_17	alt_donor	9689110	9689111	+	asmbl_19121	none	STRG.20589.1,Trinity_GG_28575_c0_g1_i1,blat.proc3825174.chain_1426	3	STRG.20589.2,STRG.20589.3,Trinity_GG_28575_c0_g1_i2,Trinity_GG_28575_c0_g1_i3,blat.proc3825174.chain_1424,blat.proc3825174.chain_1425	6
scaffold_11	starts_in_intron	7596973	7596973	-	asmbl_6779	none	Trinity_GG_7670_c0_g1_i3,blat.proc3825154.chain_2263	2	STRG.13763.1,STRG.13763.2,Trinity_GG_7670_c0_g1_i1,Trinity_GG_7670_c0_g1_i2,blat.proc3825154.chain_2264,blat.proc3825154.chain_2265	6
scaffold_11	starts_in_intron	9532025	9532025	-	asmbl_6940	none	blat.proc3825154.chain_2508	1	STRG.13981.1,blat.proc3825154.chain_2509	2
scaffold_12	alt_acceptor	5042709	5042710	-	asmbl_8474	none	STRG.14681.2	1	STRG.14681.1,blat.proc3825154.chain_3105,blat.proc3825154.chain_3106	3
scaffold_12	retained_exon	7591312	7591701	-	asmbl_8600	none	STRG.14839.2,blat.proc3825154.chain_3349	2	STRG.14839.1,blat.proc3825154.chain_3348	2
scaffold_10	retained_intron	4524826	4524957	-	asmbl_4297	none	blat.proc3825154.chain_750	1	blat.proc3825154.chain_749	1
scaffold_25	alt_donor	1232268	1232269	+	asmbl_33368	none	STRG.27169.1,blat.proc3825178.chain_325	2	STRG.27169.2,blat.proc3825178.chain_324	2
scaffold_10	alt_acceptor	1173804	1173805	+	asmbl_2914,asmbl_2915,asmbl_2916,asmbl_2919	none	STRG.12009.1,STRG.12009.2,STRG.12009.3,blat.proc3825170.chain_767,blat.proc3825170.chain_768,blat.proc3825170.chain_769,blat.proc3825170.chain_770	7	STRG.12009.4	1
scaffold_4	spliced_intron	13434608	13434816	-	asmbl_42997	none	STRG.4982.1,blat.proc3825150.chain_1165	2	blat.proc3825150.chain_1164	1
scaffold_7	starts_in_intron	13867290	13867290	-	asmbl_51319	none	STRG.9480.2,blat.proc3825152.chain_1823	2	STRG.9480.1,blat.proc3825152.chain_1822	2
scaffold_27	spliced_intron	390464	390593	-	asmbl_36688	none	STRG.28565.2	1	blat.proc3825162.chain_1811	1
scaffold_18	ends_in_intron	10487891	10487891	-	asmbl_20116	none	STRG.21650.2,blat.proc3825158.chain_2538	2	STRG.21650.1,Trinity_GG_12099_c0_g1_i1,blat.proc3825158.chain_2539	3
scaffold_7	retained_exon	5916586	5916761	-	asmbl_50899	none	STRG.8897.2,blat.proc3825152.chain_1284	2	STRG.8897.1,blat.proc3825152.chain_1287	2
scaffold_15	alternate_exon	14633628	14633806	-	asmbl_14735	none	blat.proc3825156.chain_3747	1	STRG.18877.2,STRG.18877.3,STRG.18877.4,blat.proc3825156.chain_3748,blat.proc3825156.chain_3749	5
scaffold_5	spliced_intron	233770	233796	+	asmbl_45093	none	STRG.5589.2	1	STRG.5589.1	1
scaffold_3	alt_donor	11660885	11660886	+	asmbl_40369,asmbl_40370,asmbl_40372,asmbl_40374	none	STRG.3605.1,STRG.3605.2,STRG.3605.4,Trinity_GG_19349_c0_g1_i3,Trinity_GG_19349_c0_g1_i6,Trinity_GG_19349_c0_g1_i7,blat.proc3825166.chain_119,blat.proc3825166.chain_122,blat.proc3825166.chain_123,blat.proc3825166.chain_124	10	STRG.3605.3,STRG.3605.5,Trinity_GG_19349_c0_g1_i4,Trinity_GG_19349_c0_g1_i8,blat.proc3825166.chain_120,blat.proc3825166.chain_121,blat.proc3825166.chain_125	7
scaffold_22	alternate_exon	6222004	6222120	-	asmbl_29325	none	STRG.24984.4	1	STRG.24984.1,STRG.24984.3	2
scaffold_10	alt_acceptor	3794245	3794246	-	asmbl_4231	none	STRG.12212.3	1	STRG.12212.1,blat.proc3825154.chain_782,blat.proc3825154.chain_783	3
scaffold_2	starts_in_intron	14198493	14198493	-	asmbl_23572	none	STRG.2414.2,blat.proc3825148.chain_2406	2	STRG.2414.1,STRG.2414.3,STRG.2414.4,blat.proc3825148.chain_2405,blat.proc3825148.chain_2407	5
scaffold_17	alt_donor	6805977	6805978	-	asmbl_17988	none	STRG.20334.3	1	STRG.20334.1,STRG.20334.2	2
scaffold_3	alt_donor	14217873	14217874	-	asmbl_39342	none	STRG.3758.2	1	STRG.3758.1	1
scaffold_7	retained_intron	5916256	5917155	-	asmbl_50904	none	blat.proc3825152.chain_1288	1	STRG.8897.1,blat.proc3825152.chain_1287	2
scaffold_19	retained_exon	12394175	12394258	-	asmbl_22478,asmbl_22479,asmbl_22480	none	STRG.22570.1,STRG.22570.2,STRG.22570.3,blat.proc3825158.chain_3327,blat.proc3825158.chain_3328,blat.proc3825158.chain_3330	6	blat.proc3825158.chain_3326,blat.proc3825158.chain_3329	2
scaffold_18	retained_intron	11326733	11326957	+	asmbl_20940,asmbl_20942	none	STRG.21676.1,blat.proc3825174.chain_2683,blat.proc3825174.chain_2691	3	STRG.21676.2	1
scaffold_25	spliced_intron	6325008	6325126	-	asmbl_34356,asmbl_34357,asmbl_34359,asmbl_34360,asmbl_34362	none	STRG.27519.1,STRG.27519.2,blat.proc3825162.chain_938,blat.proc3825162.chain_940,blat.proc3825162.chain_941,blat.proc3825162.chain_942,blat.proc3825162.chain_943	7	blat.proc3825162.chain_939	1
scaffold_9	starts_in_intron	9614533	9614533	-	asmbl_55215	none	STRG.11330.1,blat.proc3825152.chain_3607	2	STRG.11330.3,blat.proc3825152.chain_3606	2
scaffold_20	spliced_intron	6975652	6975749	+	asmbl_26687	none	STRG.23262.2,blat.proc3825176.chain_446	2	blat.proc3825176.chain_445	1
scaffold_12	alt_acceptor	14125731	14125732	-	asmbl_8988	none	STRG.15244.2	1	blat.proc3825156.chain_78	1
scaffold_10	alt_donor	5156278	5156279	+	asmbl_3143	none	blat.proc3825170.chain_1028	1	STRG.12338.1,blat.proc3825170.chain_1029	2
scaffold_18	skipped_exon	11912994	11914248	+	asmbl_20955	none	STRG.21695.2,blat.proc3825174.chain_2722	2	STRG.21695.1	1
scaffold_18	alt_donor	7641373	7641374	-	asmbl_19959,asmbl_19965,asmbl_19966,asmbl_19967	none	STRG.21463.2,STRG.21463.3,STRG.21463.4,blat.proc3825158.chain_2393,blat.proc3825158.chain_2394	5	STRG.21463.1,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2392,blat.proc3825158.chain_2396,blat.proc3825158.chain_2397	5
scaffold_18	retained_exon	1887353	1887391	-	asmbl_19655,asmbl_19656,asmbl_19663,asmbl_19664,asmbl_19665	none	STRG.21081.3,STRG.21081.7,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2014	5	STRG.21081.1,blat.proc3825158.chain_2010,blat.proc3825158.chain_2013,blat.proc3825158.chain_2018	4
scaffold_14	starts_in_intron	15121750	15121750	+	asmbl_12565	none	Trinity_GG_27062_c0_g1_i14	1	Trinity_GG_27062_c0_g1_i8,blat.proc3825172.chain_2452	2
scaffold_13	starts_in_intron	3159998	3159998	+	asmbl_10665	none	Trinity_GG_25910_c0_g1_i1,blat.proc3825172.chain_399	2	STRG.15624.1,STRG.15624.2,blat.proc3825172.chain_400	3
scaffold_14	alt_acceptor	13589081	13589082	+	asmbl_12482	none	STRG.17644.1,blat.proc3825172.chain_2354	2	STRG.17644.2	1
scaffold_28	alt_donor	5257640	5257641	-	asmbl_38280,asmbl_38282	none	STRG.29682.1,STRG.29682.2,blat.proc3825162.chain_2871	3	blat.proc3825162.chain_2872	1
scaffold_11	alternate_exon	3543902	3543987	+	asmbl_5450	none	STRG.13482.2,Trinity_GG_24726_c0_g1_i2,blat.proc3825170.chain_2030	3	STRG.13482.1,blat.proc3825170.chain_2031	2
scaffold_15	retained_intron	13327570	13327726	+	asmbl_15628,asmbl_15630,asmbl_15631	none	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	6	STRG.18771.1,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389	6
scaffold_21	starts_in_intron	6988761	6988761	-	asmbl_27769	none	Trinity_GG_13519_c0_g1_i1,blat.proc3825160.chain_1368	2	STRG.24228.1,STRG.24228.2,blat.proc3825160.chain_1367,blat.proc3825160.chain_1369	4
scaffold_13	alt_acceptor	16048913	16048914	+	asmbl_11547	none	STRG.16642.1	1	STRG.16642.2	1
scaffold_19	starts_in_intron	1038502	1038502	+	asmbl_21231	none	Trinity_GG_29383_c0_g1_i1,blat.proc3825174.chain_2868	2	STRG.21896.1,blat.proc3825174.chain_2871	2
scaffold_6	alt_donor	2487898	2487899	+	asmbl_46756	none	STRG.7248.4,Trinity_GG_21329_c1_g1_i1,blat.proc3825166.chain_3500	3	STRG.7248.1,STRG.7248.5	2
scaffold_6	retained_intron	72768	72798	-	asmbl_48020,asmbl_48021	none	STRG.7072.1,STRG.7072.4	2	STRG.7072.2,STRG.7072.3,Trinity_GG_3947_c0_g1_i4	3
scaffold_27	starts_in_intron	4807510	4807510	+	asmbl_36320	none	Trinity_GG_33330_c0_g1_i2,blat.proc3825178.chain_2144	2	STRG.28926.1,blat.proc3825178.chain_2140	2
scaffold_5	alt_acceptor	13227833	13227834	+	asmbl_45859	none	STRG.6563.2,blat.proc3825166.chain_2738	2	STRG.6563.1	1
scaffold_16	starts_in_intron	1779501	1779501	+	asmbl_16091	none	Trinity_GG_27789_c0_g1_i3,blat.proc3825174.chain_23	2	STRG.19102.1,STRG.19102.2,Trinity_GG_27789_c0_g1_i4,blat.proc3825174.chain_20,blat.proc3825174.chain_22	5
scaffold_22	alternate_exon	525891	525947	+	asmbl_29863	none	blat.proc3825176.chain_1743	1	STRG.24700.1,blat.proc3825176.chain_1741,blat.proc3825176.chain_1742	3
scaffold_10	starts_in_intron	9097289	9097289	-	asmbl_4679	none	blat.proc3825154.chain_1220	1	STRG.12663.1,blat.proc3825154.chain_1219	2
scaffold_23	retained_intron	6290510	6290714	-	asmbl_30967,asmbl_30969,asmbl_30970	none	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190	7	STRG.25975.1,STRG.25975.3,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192,blat.proc3825160.chain_3193	9
scaffold_23	retained_intron	2127756	2128017	-	asmbl_30693	none	Trinity_GG_14361_c0_g1_i3,blat.proc3825160.chain_2847	2	STRG.25683.1,STRG.25683.2,Trinity_GG_14361_c0_g1_i2,Trinity_GG_14361_c0_g1_i4,blat.proc3825160.chain_2846,blat.proc3825160.chain_2848	6
scaffold_12	retained_intron	7422596	7422854	-	asmbl_8583,asmbl_8587	none	STRG.14825.1,blat.proc3825154.chain_3339,blat.proc3825154.chain_3340,blat.proc3825154.chain_3341	4	STRG.14825.3,blat.proc3825154.chain_3337	2
scaffold_12	alternate_exon	14125447	14125907	-	asmbl_8992	none	STRG.15244.3,blat.proc3825156.chain_81	2	blat.proc3825156.chain_78	1
scaffold_18	alt_acceptor	1860117	1860118	+	asmbl_20384	none	STRG.21073.1,blat.proc3825174.chain_1971	2	STRG.21073.2,blat.proc3825174.chain_1970	2
scaffold_8	alternate_exon	17302311	17302705	-	asmbl_52446	none	blat.proc3825152.chain_2898	1	blat.proc3825152.chain_2899	1
scaffold_12	alt_donor	16175315	16175316	+	asmbl_8145,asmbl_8147	none	STRG.15373.1,STRG.15373.2,Trinity_GG_25755_c0_g1_i1,blat.proc3825172.chain_89	4	STRG.15373.3,Trinity_GG_25755_c0_g1_i3,blat.proc3825172.chain_87	3
scaffold_16	retained_intron	5754391	5755434	+	asmbl_16222,asmbl_16224	none	STRG.19319.2,Trinity_GG_27853_c1_g1_i2,Trinity_GG_27853_c1_g1_i6,blat.proc3825174.chain_158,blat.proc3825174.chain_159	5	STRG.19319.1,blat.proc3825174.chain_156,blat.proc3825174.chain_157	3
scaffold_8	retained_exon	10484123	10484486	+	asmbl_53172	none	STRG.10286.1,blat.proc3825168.chain_2872	2	STRG.10286.2,blat.proc3825168.chain_2874	2
scaffold_7	alt_donor	130197	130198	-	asmbl_50665	none	STRG.8595.7	1	STRG.8595.2,STRG.8595.5	2
scaffold_18	spliced_intron	7631535	7631669	-	asmbl_19959,asmbl_19960	none	STRG.21463.2,blat.proc3825158.chain_2391,blat.proc3825158.chain_2392,blat.proc3825158.chain_2393	4	STRG.21463.1,blat.proc3825158.chain_2394,blat.proc3825158.chain_2397	3
scaffold_20	starts_in_intron	4480426	4480426	-	asmbl_25736	none	STRG.23127.2,blat.proc3825160.chain_174	2	STRG.23127.1,STRG.23127.4,blat.proc3825160.chain_168	3
scaffold_25	ends_in_intron	8667329	8667329	+	asmbl_33742	none	blat.proc3825178.chain_784	1	STRG.27689.1,STRG.27689.3,blat.proc3825178.chain_783,blat.proc3825178.chain_785,blat.proc3825178.chain_786	5
scaffold_17	alternate_exon	1289897	1292951	-	asmbl_17679,asmbl_17680,asmbl_17682	none	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_973,blat.proc3825158.chain_975	5	STRG.19964.2	1
scaffold_26	alternate_exon	2962554	2962975	-	asmbl_35461	none	STRG.27989.5,Trinity_GG_15696_c1_g1_i1,blat.proc3825162.chain_1302	3	STRG.27989.2,blat.proc3825162.chain_1300	2
scaffold_2	alternate_exon	6081245	6085290	-	asmbl_23173	none	STRG.1980.1,Trinity_GG_1051_c0_g1_i2,blat.proc3825148.chain_1868	3	STRG.1980.3,Trinity_GG_1051_c0_g1_i6,blat.proc3825148.chain_1867	3
scaffold_19	starts_in_intron	6686232	6686232	+	asmbl_21431	none	Trinity_GG_29526_c0_g1_i3,blat.proc3825174.chain_3127	2	STRG.22189.1,Trinity_GG_29526_c0_g1_i1,blat.proc3825174.chain_3124,blat.proc3825174.chain_3126	4
scaffold_2320	starts_in_intron	1004	1004	+	asmbl_31986	none	Trinity_GG_34280_c0_g1_i1	1	blat.proc3825178.chain_3675	1
scaffold_2	alt_acceptor	15267953	15267954	+	asmbl_25001,asmbl_25006	none	STRG.2485.3,blat.proc3825164.chain_2605	2	STRG.2485.1,STRG.2485.2,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2606,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	10
scaffold_14	spliced_intron	8415776	8416021	+	asmbl_12243,asmbl_12244,asmbl_12245	none	STRG.17281.1,STRG.17281.2,blat.proc3825172.chain_2049,blat.proc3825172.chain_2050	4	STRG.17281.3,Trinity_GG_26820_c0_g1_i2,Trinity_GG_26820_c0_g1_i3,blat.proc3825172.chain_2051,blat.proc3825172.chain_2052	5
scaffold_17	spliced_intron	14040941	14041125	+	asmbl_19380	none	STRG.20874.2	1	STRG.20874.1,blat.proc3825174.chain_1785	2
scaffold_1	alt_donor	6279703	6279704	-	asmbl_343	none	STRG.423.4	1	STRG.423.1,STRG.423.2,STRG.423.3,Trinity_GG_229_c1_g1_i1,blat.proc3825148.chain_419	5
scaffold_4	retained_exon	306548	306715	-	asmbl_42325	none	STRG.4129.3,Trinity_GG_2302_c0_g1_i1,blat.proc3825150.chain_362	3	STRG.4129.1,Trinity_GG_2302_c0_g1_i2,blat.proc3825150.chain_361	3
scaffold_19	spliced_intron	3683526	3683854	+	asmbl_21332,asmbl_21336	none	STRG.22058.2,STRG.22058.5	2	blat.proc3825174.chain_3084,blat.proc3825174.chain_3085	2
scaffold_9	alternate_exon	11540296	11540320	+	asmbl_54358	none	STRG.11471.3	1	STRG.11471.1,STRG.11471.2,Trinity_GG_23714_c0_g1_i2,blat.proc3825170.chain_296	4
scaffold_5	starts_in_intron	8729636	8729636	-	asmbl_44227	none	blat.proc3825150.chain_2402	1	STRG.6209.1,blat.proc3825150.chain_2403	2
scaffold_10	alt_donor	8332059	8332060	-	asmbl_4577,asmbl_4579,asmbl_4580	none	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1187,blat.proc3825154.chain_1189,blat.proc3825154.chain_1192	5	blat.proc3825154.chain_1182	1
scaffold_22	ends_in_intron	9157183	9157183	-	asmbl_29520,asmbl_29521	none	Trinity_GG_14095_c0_g1_i2,blat.proc3825160.chain_2365	2	STRG.25251.1,STRG.25251.2,blat.proc3825160.chain_2364	3
scaffold_3	starts_in_intron	10929002	10929002	+	asmbl_40321	none	Trinity_GG_19312_c0_g1_i2,blat.proc3825166.chain_58	2	STRG.3532.1,blat.proc3825166.chain_59	2
scaffold_21	spliced_intron	1054388	1054549	-	asmbl_27376,asmbl_27380,asmbl_27381	none	STRG.23787.2,STRG.23787.3,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	4	Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_926	2
scaffold_10	spliced_intron	378745	379004	-	asmbl_3948	none	STRG.11922.4,blat.proc3825154.chain_462	2	STRG.11922.2,Trinity_GG_6631_c0_g1_i7,blat.proc3825154.chain_458	3
scaffold_4	alt_acceptor	14436357	14436358	+	asmbl_41873	none	STRG.5059.2	1	STRG.5059.1,blat.proc3825166.chain_1472	2
scaffold_3	retained_intron	6659860	6660509	+	asmbl_40104,asmbl_40107,asmbl_40109,asmbl_40112,asmbl_40113,asmbl_40114,asmbl_40115	none	STRG.3295.3,Trinity_GG_19180_c0_g1_i4,blat.proc3825164.chain_3561,blat.proc3825164.chain_3564,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3570,blat.proc3825164.chain_3571	8	blat.proc3825164.chain_3568	1
scaffold_23	alt_acceptor	4493407	4493408	+	asmbl_31514	none	STRG.25865.2	1	STRG.25865.1,blat.proc3825176.chain_2789	2
scaffold_23	retained_intron	5583740	5583837	+	asmbl_31587	none	STRG.25931.3,blat.proc3825176.chain_2800	2	STRG.25931.4	1
scaffold_2	spliced_intron	7827117	7827319	-	asmbl_23281,asmbl_23284	none	STRG.2078.1,Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i3,blat.proc3825148.chain_2094,blat.proc3825148.chain_2095	5	STRG.2078.3,Trinity_GG_1152_c0_g1_i4,blat.proc3825148.chain_2096	3
scaffold_2	skipped_exon	7781621	7782467	+	asmbl_24575	none	STRG.2075.5	1	STRG.2075.1,STRG.2075.2,STRG.2075.3,STRG.2075.4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2229,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	8
scaffold_15	retained_intron	2603367	2603410	+	asmbl_15070	none	STRG.18041.1,Trinity_GG_27216_c0_g1_i1,blat.proc3825172.chain_2731	3	STRG.18041.2,STRG.18041.3	2
scaffold_26	starts_in_intron	9751747	9751747	+	asmbl_35253	none	STRG.28515.3,Trinity_GG_33053_c2_g1_i1,blat.proc3825178.chain_1562	3	STRG.28515.2	1
scaffold_18	skipped_exon	3915622	3917646	-	asmbl_19782	none	blat.proc3825158.chain_2160	1	STRG.21203.2,STRG.21203.3,STRG.21203.4,STRG.21203.5	4
scaffold_5	skipped_exon	9085103	9085385	+	asmbl_45600	none	Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2480	2	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6
scaffold_24	alt_donor	4454305	4454306	+	asmbl_32202	none	blat.proc3825176.chain_3501	1	STRG.26606.2,blat.proc3825176.chain_3500	2
scaffold_20	alternate_exon	8291070	8291153	+	asmbl_26758,asmbl_26760	none	STRG.23374.4,blat.proc3825176.chain_518	2	STRG.23374.1,STRG.23374.2,STRG.23374.3,blat.proc3825176.chain_519	4
scaffold_27	skipped_exon	973032	975196	+	asmbl_35973	none	Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	2	STRG.28595.1,STRG.28595.4,Trinity_GG_33133_c0_g1_i11,blat.proc3825178.chain_1720	4
scaffold_6	spliced_intron	13919016	13919162	-	asmbl_48958	none	STRG.8139.4	1	STRG.8139.1,blat.proc3825152.chain_568,blat.proc3825152.chain_570	3
scaffold_11	alt_acceptor	2203645	2203646	-	asmbl_6485	none	STRG.13383.4	1	STRG.13383.1,STRG.13383.2,STRG.13383.3	3
scaffold_13	spliced_intron	2636936	2637161	+	asmbl_10631	none	STRG.15562.1,Trinity_GG_25823_c0_g1_i1,blat.proc3825172.chain_213	3	STRG.15562.2,Trinity_GG_25823_c0_g1_i2,blat.proc3825172.chain_214	3
scaffold_7	alt_acceptor	4915924	4915925	+	asmbl_49761	none	STRG.8836.2	1	STRG.8836.4	1
scaffold_20	ends_in_intron	2762726	2762726	-	asmbl_25673,asmbl_25674	none	STRG.23018.4,STRG.23018.5	2	STRG.23018.2,STRG.23018.3	2
scaffold_3	starts_in_intron	14488237	14488237	-	asmbl_39381	none	blat.proc3825148.chain_3724	1	STRG.3790.1,Trinity_GG_2093_c1_g1_i2,blat.proc3825148.chain_3722,blat.proc3825148.chain_3723	4
scaffold_6	spliced_intron	7936991	7937111	-	asmbl_48510,asmbl_48511,asmbl_48513,asmbl_48514,asmbl_48515,asmbl_48517	none	STRG.7676.1,STRG.7676.2,STRG.7676.4,blat.proc3825152.chain_69,blat.proc3825152.chain_71,blat.proc3825152.chain_72,blat.proc3825152.chain_73	7	blat.proc3825152.chain_70	1
scaffold_12	starts_in_intron	10606750	10606750	+	asmbl_7948	none	blat.proc3825170.chain_3578	1	STRG.15036.1,STRG.15036.2,STRG.15036.3,STRG.15036.4,blat.proc3825170.chain_3576,blat.proc3825170.chain_3579,blat.proc3825170.chain_3580	7
scaffold_12	ends_in_intron	16175527	16175527	+	asmbl_8148	none	Trinity_GG_25755_c0_g1_i2,blat.proc3825172.chain_86	2	STRG.15373.1,STRG.15373.2,STRG.15373.3,Trinity_GG_25755_c0_g1_i1,Trinity_GG_25755_c0_g1_i3,blat.proc3825172.chain_87,blat.proc3825172.chain_89	7
scaffold_2	alt_acceptor	7407083	7407084	-	asmbl_23256	none	STRG.2065.5	1	STRG.2065.1,STRG.2065.3,STRG.2065.4,STRG.2065.6,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i4,Trinity_GG_1101_c0_g1_i5,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1982,blat.proc3825148.chain_1983,blat.proc3825148.chain_1984,blat.proc3825148.chain_1985,blat.proc3825148.chain_1986	13
scaffold_13	alternate_exon	13972132	13972495	+	asmbl_11417	none	STRG.16448.2	1	blat.proc3825172.chain_1171,blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	3
scaffold_1	alt_donor	103169	103170	+	asmbl_1398,asmbl_1399	none	blat.proc3825164.chain_108,blat.proc3825164.chain_109	2	STRG.12.1,blat.proc3825164.chain_106,blat.proc3825164.chain_107	3
scaffold_28	starts_in_intron	5390468	5390468	+	asmbl_37589	none	blat.proc3825178.chain_2870	1	STRG.29687.1,Trinity_GG_33768_c0_g1_i2,Trinity_GG_33768_c0_g1_i3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866,blat.proc3825178.chain_2868,blat.proc3825178.chain_2869	7
scaffold_20	alt_donor	8936433	8936434	-	asmbl_26014,asmbl_26015	none	STRG.23433.1,STRG.23433.2	2	STRG.23433.3	1
scaffold_2	alt_donor	18610518	18610519	-	asmbl_23802	none	STRG.2736.2	1	STRG.2736.3,Trinity_GG_1475_c0_g1_i1,blat.proc3825148.chain_2626	3
scaffold_17	spliced_intron	13844846	13845553	-	asmbl_18381	none	STRG.20860.2,blat.proc3825158.chain_1778	2	STRG.20860.1,STRG.20860.3,blat.proc3825158.chain_1779	3
scaffold_12	alt_acceptor	14946374	14946375	-	asmbl_9017	none	STRG.15288.2,Trinity_GG_8556_c0_g1_i4,blat.proc3825156.chain_85	3	STRG.15288.1,Trinity_GG_8556_c0_g1_i1,Trinity_GG_8556_c0_g1_i5,blat.proc3825156.chain_84,blat.proc3825156.chain_86	5
scaffold_15	alt_donor	15906997	15906998	-	asmbl_14807,asmbl_14810,asmbl_14811	none	STRG.18975.1,blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_64	4	STRG.18975.2	1
scaffold_11	retained_intron	4755809	4755904	+	asmbl_5520	none	blat.proc3825170.chain_2116	1	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2117	3
scaffold_27	alternate_exon	5062294	5062581	-	asmbl_36987,asmbl_36988	none	STRG.28937.1,STRG.28937.2	2	Trinity_GG_16216_c0_g1_i1,Trinity_GG_16216_c0_g1_i3,blat.proc3825162.chain_2160,blat.proc3825162.chain_2162	4
scaffold_2	retained_intron	1302136	1302291	+	asmbl_24178	none	STRG.1609.2,Trinity_GG_18242_c0_g1_i1,blat.proc3825164.chain_1789	3	STRG.1609.3,Trinity_GG_18242_c0_g1_i2,blat.proc3825164.chain_1790	3
scaffold_9	retained_intron	11793088	11794280	-	asmbl_55303,asmbl_55308	none	STRG.11496.3,blat.proc3825152.chain_3685	2	STRG.11496.1,blat.proc3825152.chain_3684,blat.proc3825152.chain_3686	3
scaffold_23	spliced_intron	7004912	7004953	-	asmbl_31006	none	STRG.26025.4	1	STRG.26025.2,STRG.26025.3,STRG.26025.5,Trinity_GG_14528_c0_g1_i2,blat.proc3825160.chain_3122,blat.proc3825160.chain_3123	6
scaffold_2	alt_donor	2292584	2292585	-	asmbl_22882	none	STRG.1669.1	1	STRG.1669.2	1
scaffold_23	spliced_intron	5864511	5864677	+	asmbl_31606	none	STRG.25972.1,blat.proc3825176.chain_2869	2	Trinity_GG_31616_c0_g1_i3,blat.proc3825176.chain_2868	2
scaffold_11	starts_in_intron	11639898	11639898	+	asmbl_5989	none	blat.proc3825170.chain_2633	1	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2634,blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2639,blat.proc3825170.chain_2640	8
scaffold_17	skipped_exon	7959936	7960883	-	asmbl_18065	none	STRG.20414.1,blat.proc3825158.chain_1457	2	STRG.20414.2,blat.proc3825158.chain_1456	2
scaffold_18	alt_acceptor	13656468	13656469	-	asmbl_20184	none	STRG.21804.3	1	STRG.21804.1,STRG.21804.2	2
scaffold_15	alt_donor	15409993	15409994	+	asmbl_15766,asmbl_15773	none	STRG.18930.5,STRG.18930.7,blat.proc3825172.chain_3587	3	STRG.18930.10,STRG.18930.3,STRG.18930.6,blat.proc3825172.chain_3586,blat.proc3825172.chain_3589	5
scaffold_11	retained_intron	8082241	8082340	+	asmbl_5713,asmbl_5714,asmbl_5716	none	STRG.13816.1,Trinity_GG_24895_c0_g1_i1,Trinity_GG_24895_c0_g1_i2,Trinity_GG_24895_c0_g1_i5,blat.proc3825170.chain_2309,blat.proc3825170.chain_2311,blat.proc3825170.chain_2312	7	Trinity_GG_24895_c0_g1_i3,blat.proc3825170.chain_2310	2
scaffold_11	ends_in_intron	9724660	9724660	+	asmbl_5894	none	Trinity_GG_25005_c0_g1_i3,blat.proc3825170.chain_2505	2	STRG.13987.2,Trinity_GG_25005_c0_g1_i1,blat.proc3825170.chain_2506	3
scaffold_4	alt_donor	12544261	12544262	-	asmbl_42924	none	blat.proc3825150.chain_1082	1	STRG.4891.1,blat.proc3825150.chain_1081,blat.proc3825150.chain_1083	3
scaffold_9	alt_acceptor	15589901	15589902	+	asmbl_54579,asmbl_54581	none	STRG.11750.1,blat.proc3825170.chain_531,blat.proc3825170.chain_532	3	STRG.11750.2	1
scaffold_17	alt_acceptor	9530710	9530711	+	asmbl_19110	none	blat.proc3825174.chain_1399	1	STRG.20578.2,Trinity_GG_28562_c0_g1_i2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1395,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	9
scaffold_25	starts_in_intron	5695327	5695327	-	asmbl_34277	none	blat.proc3825162.chain_859	1	STRG.27468.1,blat.proc3825162.chain_857,blat.proc3825162.chain_858	3
scaffold_24	retained_intron	8992308	8992351	+	asmbl_32475	none	STRG.26923.1,Trinity_GG_32198_c0_g1_i2,blat.proc3825178.chain_120	3	STRG.26923.2	1
scaffold_9	alt_donor	4901126	4901127	+	asmbl_53972	none	STRG.11065.2	1	STRG.11065.1,blat.proc3825168.chain_3605	2
scaffold_14	spliced_intron	8651388	8651714	-	asmbl_13334	none	STRG.17300.2,blat.proc3825156.chain_2139	2	STRG.17300.1,blat.proc3825156.chain_2138	2
scaffold_3	spliced_intron	6692163	6692245	+	asmbl_40126	none	STRG.3291.1,Trinity_GG_19169_c0_g1_i1,blat.proc3825164.chain_3538	3	STRG.3291.2	1
scaffold_25	alt_acceptor	5996624	5996625	-	asmbl_34302	none	STRG.27504.1	1	STRG.27504.2	1
scaffold_21	starts_in_intron	5263424	5263424	-	asmbl_27632	none	blat.proc3825160.chain_1190	1	STRG.24056.1,Trinity_GG_13417_c0_g1_i1,blat.proc3825160.chain_1191	3
scaffold_11	starts_in_intron	3800035	3800035	-	asmbl_6585	none	STRG.13501.1,blat.proc3825154.chain_2063	2	STRG.13501.2	1
scaffold_3	spliced_intron	14559144	14559490	-	asmbl_39396	none	STRG.3796.2,Trinity_GG_2099_c0_g1_i1,blat.proc3825148.chain_3730	3	STRG.3796.1,Trinity_GG_2099_c0_g1_i2,blat.proc3825148.chain_3731	3
scaffold_4	alternate_exon	7013628	7013761	+	asmbl_41440	none	Trinity_GG_19824_c0_g1_i2	1	Trinity_GG_19824_c0_g1_i3	1
scaffold_20	retained_intron	10384347	10384667	+	asmbl_26958	none	blat.proc3825176.chain_672	1	Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_671	2
scaffold_6	spliced_intron	18269465	18269732	+	asmbl_47827,asmbl_47828	none	STRG.8501.1,STRG.8501.2,blat.proc3825168.chain_978	3	STRG.8501.3,Trinity_GG_21995_c0_g1_i1,blat.proc3825168.chain_981	3
scaffold_21	alt_acceptor	11346223	11346224	-	asmbl_28124	none	STRG.24614.4	1	STRG.24614.1	1
scaffold_13	alt_donor	5381774	5381775	+	asmbl_10844	none	STRG.15834.2	1	STRG.15834.1,blat.proc3825172.chain_565	2
scaffold_7	spliced_intron	1235347	1235447	+	asmbl_49592	none	blat.proc3825168.chain_1068	1	STRG.8637.4,blat.proc3825168.chain_1072	2
scaffold_4	alt_acceptor	12568143	12568144	-	asmbl_42927	none	STRG.4892.1,blat.proc3825150.chain_1080	2	STRG.4892.2	1
scaffold_2	alt_acceptor	6652240	6652241	+	asmbl_24488	none	STRG.2024.2,blat.proc3825164.chain_2097	2	STRG.2024.1,blat.proc3825164.chain_2098	2
scaffold_20	alt_donor	1490355	1490356	+	asmbl_26416,asmbl_26418	none	STRG.22869.2,STRG.22869.3	2	STRG.22869.1,STRG.22869.6	2
scaffold_25	alt_acceptor	4469551	4469552	-	asmbl_34191	none	STRG.27380.1	1	STRG.27380.2	1
scaffold_9	retained_intron	5283686	5284698	+	asmbl_54022,asmbl_54023	none	STRG.11112.1,STRG.11112.2,blat.proc3825168.chain_3569,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6	STRG.11112.3	1
scaffold_15	alt_acceptor	8797704	8797705	-	asmbl_14355	none	STRG.18424.3	1	STRG.18424.1,blat.proc3825156.chain_3311,blat.proc3825156.chain_3314	3
scaffold_13	alt_acceptor	15511057	15511058	+	asmbl_11513	none	STRG.16593.2	1	STRG.16593.3	1
scaffold_17	spliced_intron	9095446	9095758	-	asmbl_18154	none	STRG.20540.1,blat.proc3825158.chain_1537	2	blat.proc3825158.chain_1538	1
scaffold_16	retained_intron	809774	810034	-	asmbl_16909	none	blat.proc3825158.chain_129	1	STRG.19064.1,STRG.19064.2,STRG.19064.3,blat.proc3825158.chain_128,blat.proc3825158.chain_130,blat.proc3825158.chain_131,blat.proc3825158.chain_132	7
scaffold_2	ends_in_intron	885886	885886	+	asmbl_24123	none	blat.proc3825164.chain_1623	1	STRG.1564.2,STRG.1564.3,blat.proc3825164.chain_1624	3
scaffold_8	spliced_intron	10239564	10239921	+	asmbl_53162,asmbl_53167	none	STRG.10282.1,blat.proc3825168.chain_2729,blat.proc3825168.chain_2731	3	STRG.10282.3,Trinity_GG_22967_c0_g1_i4,blat.proc3825168.chain_2730,blat.proc3825168.chain_2732	4
scaffold_22	alternate_exon	6034148	6034206	+	asmbl_30089	none	STRG.24956.2,Trinity_GG_31120_c0_g1_i3,blat.proc3825176.chain_2081	3	STRG.24956.1,Trinity_GG_31120_c0_g1_i2,blat.proc3825176.chain_2079	3
scaffold_21	skipped_exon	4662859	4664245	-	asmbl_27582	none	STRG.24011.1	1	STRG.24011.2	1
scaffold_14	skipped_exon	14386053	14387177	+	asmbl_12544	none	STRG.17700.1	1	STRG.17700.2	1
scaffold_2	spliced_intron	2995469	2995510	-	asmbl_22950	none	STRG.1746.1	1	STRG.1746.4	1
scaffold_17	ends_in_intron	11038431	11038431	-	asmbl_18262	none	Trinity_GG_11602_c0_g1_i4,blat.proc3825158.chain_1654	2	STRG.20664.4,STRG.20664.6,blat.proc3825158.chain_1651	3
scaffold_16	retained_exon	6118754	6118853	+	asmbl_16267,asmbl_16268,asmbl_16270	none	STRG.19343.1,blat.proc3825174.chain_239,blat.proc3825174.chain_242,blat.proc3825174.chain_244	4	blat.proc3825174.chain_240	1
scaffold_2	starts_in_intron	13445979	13445979	-	asmbl_23518	none	blat.proc3825148.chain_2361	1	STRG.2363.1,blat.proc3825148.chain_2360,blat.proc3825148.chain_2363,blat.proc3825148.chain_2364	4
scaffold_11	spliced_intron	9021079	9021443	-	asmbl_6902,asmbl_6905,asmbl_6906,asmbl_6907	none	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406,blat.proc3825154.chain_2407	5	blat.proc3825154.chain_2408	1
scaffold_26	alternate_exon	6706964	6710998	-	asmbl_35700	none	STRG.28371.2	1	STRG.28371.3,blat.proc3825162.chain_1602,blat.proc3825162.chain_1603	3
scaffold_18	ends_in_intron	6003372	6003372	+	asmbl_20658	none	blat.proc3825174.chain_2354	1	STRG.21369.1,blat.proc3825174.chain_2357,blat.proc3825174.chain_2358,blat.proc3825174.chain_2359	4
scaffold_20	starts_in_intron	1579735	1579735	+	asmbl_26433	none	blat.proc3825162.chain_533	1	STRG.22883.1	1
scaffold_5	ends_in_intron	6617452	6617452	-	asmbl_44120	none	blat.proc3825150.chain_2270	1	STRG.6066.1,STRG.6066.2,blat.proc3825150.chain_2271	3
scaffold_3	spliced_intron	13647877	13648701	-	asmbl_39275	none	STRG.3709.2,Trinity_GG_2039_c0_g1_i1,blat.proc3825148.chain_3600	3	STRG.3709.1,Trinity_GG_2039_c0_g1_i2,blat.proc3825148.chain_3601	3
scaffold_20	retained_exon	8936221	8936268	-	asmbl_26014,asmbl_26015	none	STRG.23433.1,STRG.23433.2	2	STRG.23433.3	1
scaffold_8	spliced_intron	6159495	6159934	-	asmbl_51862,asmbl_51868	none	STRG.10030.1,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275	3	STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2276	7
scaffold_27	alt_acceptor	638419	638420	-	asmbl_36710,asmbl_36712	none	STRG.28585.1,Trinity_GG_16002_c1_g1_i6,blat.proc3825162.chain_1843	3	Trinity_GG_16002_c1_g1_i5,blat.proc3825162.chain_1842	2
scaffold_3	alt_acceptor	7972772	7972773	+	asmbl_40190	none	STRG.3384.2	1	STRG.3384.1,blat.proc3825164.chain_3591	2
scaffold_21	alt_acceptor	5973973	5973974	+	asmbl_28599	none	blat.proc3825176.chain_1308	1	STRG.24136.1,blat.proc3825176.chain_1309	2
scaffold_6	ends_in_intron	14118226	14118226	+	asmbl_47581	none	STRG.8177.2,blat.proc3825168.chain_670	2	STRG.8177.1,blat.proc3825168.chain_671	2
scaffold_26	spliced_intron	5489603	5489761	+	asmbl_35003	none	blat.proc3825178.chain_1371	1	STRG.28257.4,blat.proc3825178.chain_1370	2
scaffold_8	retained_intron	9467271	9467486	-	asmbl_52037	none	blat.proc3825152.chain_2500	1	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2505	5
scaffold_19	alternate_exon	12423838	12425527	+	asmbl_21797	none	Trinity_GG_29795_c0_g1_i1,blat.proc3825174.chain_3592	2	STRG.22571.1	1
scaffold_10	alt_acceptor	12886843	12886844	+	asmbl_3553	none	Trinity_GG_24421_c0_g1_i2	1	STRG.12880.1,Trinity_GG_24421_c0_g1_i3,blat.proc3825170.chain_1510	3
scaffold_13	spliced_intron	6396106	6396589	+	asmbl_10924,asmbl_10930	none	STRG.15929.3,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	4	STRG.15929.1,Trinity_GG_26055_c0_g1_i4,blat.proc3825172.chain_654	3
scaffold_5	alt_donor	9704463	9704464	-	asmbl_44294,asmbl_44299	none	STRG.6293.4,blat.proc3825150.chain_2497,blat.proc3825150.chain_2505	3	STRG.6293.2,blat.proc3825150.chain_2499,blat.proc3825150.chain_2502,blat.proc3825150.chain_2503	4
scaffold_19	starts_in_intron	9186464	9186464	+	asmbl_21576	none	Trinity_GG_29665_c0_g1_i1,blat.proc3825174.chain_3352	2	STRG.22360.1	1
scaffold_2	alt_acceptor	16288308	16288309	+	asmbl_25111	none	blat.proc3825164.chain_2853	1	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2851,blat.proc3825164.chain_2852	4
scaffold_17	alternate_exon	7121682	7121864	-	asmbl_18048	none	STRG.20383.1	1	STRG.20383.2	1
scaffold_9	alternate_exon	4211000	4211097	+	asmbl_53946	none	STRG.11032.2	1	STRG.11032.3	1
scaffold_25	retained_intron	4538956	4539139	+	asmbl_33510	none	Trinity_GG_32413_c0_g1_i4,blat.proc3825178.chain_491	2	STRG.27392.1,blat.proc3825178.chain_495	2
scaffold_22	alt_donor	316279	316280	+	asmbl_29838,asmbl_29842,asmbl_29843,asmbl_29844	none	STRG.24686.1,blat.proc3825176.chain_1815,blat.proc3825176.chain_1816,blat.proc3825176.chain_1817,blat.proc3825176.chain_1818	5	STRG.24686.2,STRG.24686.3,blat.proc3825176.chain_1819	3
scaffold_10	ends_in_intron	982588	982588	-	asmbl_4028	none	Trinity_GG_6650_c0_g1_i2,blat.proc3825154.chain_496	2	STRG.11983.1,STRG.11983.2,STRG.11983.3,blat.proc3825154.chain_497	4
scaffold_11	alt_donor	7886071	7886072	+	asmbl_5689,asmbl_5691	none	STRG.13792.1,Trinity_GG_24911_c0_g1_i1,Trinity_GG_24911_c0_g1_i4,blat.proc3825170.chain_2334,blat.proc3825170.chain_2336	5	STRG.13792.2,STRG.13792.3,Trinity_GG_24911_c0_g1_i3,blat.proc3825170.chain_2335	4
scaffold_21	alt_acceptor	8278609	8278610	+	asmbl_28804,asmbl_28806	none	STRG.24368.1,STRG.24368.3	2	STRG.24368.2,blat.proc3825176.chain_1550	2
scaffold_13	starts_in_intron	5391270	5391270	+	asmbl_10847	none	Trinity_GG_26016_c0_g1_i1,blat.proc3825172.chain_570	2	STRG.15835.1,STRG.15835.2,blat.proc3825172.chain_571	3
scaffold_5	alt_donor	5847380	5847381	-	asmbl_44061	none	STRG.5999.1	1	STRG.5999.2	1
scaffold_10	starts_in_intron	5855837	5855837	-	asmbl_4397	none	blat.proc3825154.chain_982	1	STRG.12409.1,STRG.12409.2,STRG.12409.3,Trinity_GG_6938_c0_g1_i1,blat.proc3825154.chain_983,blat.proc3825154.chain_985	6
scaffold_14	ends_in_intron	7448442	7448442	-	asmbl_13202,asmbl_13205	none	STRG.17187.3,blat.proc3825156.chain_1983	2	STRG.17187.1,STRG.17187.2,blat.proc3825156.chain_1982	3
scaffold_9	alt_acceptor	11543725	11543726	+	asmbl_54357,asmbl_54358	none	STRG.11471.2,STRG.11471.3	2	STRG.11471.1,Trinity_GG_23714_c0_g1_i1,Trinity_GG_23714_c0_g1_i2,blat.proc3825170.chain_295,blat.proc3825170.chain_296	5
scaffold_9	starts_in_intron	9864442	9864442	-	asmbl_55240	none	STRG.11356.2,blat.proc3825152.chain_3589	2	STRG.11356.1,STRG.11356.3,Trinity_GG_6280_c0_g1_i6,blat.proc3825152.chain_3582	4
scaffold_21	retained_exon	3163840	3164007	+	asmbl_28458,asmbl_28466,asmbl_28467,asmbl_28470,asmbl_28471	none	STRG.23959.3,STRG.23959.4,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1139	5	STRG.23959.1,STRG.23959.2,STRG.23959.5,blat.proc3825176.chain_1132,blat.proc3825176.chain_1137,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	7
scaffold_2	retained_exon	14391844	14391978	+	asmbl_24927,asmbl_24929	none	STRG.2440.1,STRG.2440.2,blat.proc3825164.chain_2694,blat.proc3825164.chain_2695,blat.proc3825164.chain_2696	5	STRG.2440.3,blat.proc3825164.chain_2697	2
scaffold_4	alt_acceptor	16569913	16569914	-	asmbl_43195	none	STRG.5232.1,blat.proc3825150.chain_1414	2	STRG.5232.2	1
scaffold_6	ends_in_intron	11456692	11456692	-	asmbl_48754	none	Trinity_GG_4518_c0_g1_i2,blat.proc3825152.chain_347	2	STRG.7935.1,STRG.7935.2,blat.proc3825152.chain_345,blat.proc3825152.chain_346	4
scaffold_17	spliced_intron	5711015	5711316	-	asmbl_17948,asmbl_17950	none	STRG.20274.1,blat.proc3825158.chain_1286,blat.proc3825158.chain_1287	3	STRG.20274.2,STRG.20274.3,blat.proc3825158.chain_1288	3
scaffold_3	starts_in_intron	15573038	15573038	+	asmbl_40570,asmbl_40571	none	STRG.3847.4,blat.proc3825166.chain_329	2	STRG.3847.1,STRG.3847.3,blat.proc3825166.chain_327,blat.proc3825166.chain_328,blat.proc3825166.chain_330	5
scaffold_17	alternate_exon	13965829	13966090	-	asmbl_18393,asmbl_18395	none	STRG.20883.1,blat.proc3825158.chain_1798	2	STRG.20883.2,blat.proc3825158.chain_1797	2
scaffold_6	alternate_exon	2901666	2901805	+	asmbl_46780,asmbl_46781,asmbl_46782	none	STRG.7291.1,STRG.7291.2,STRG.7291.3,blat.proc3825166.chain_3491,blat.proc3825166.chain_3492	5	STRG.7291.4	1
scaffold_17	spliced_intron	477860	478200	-	asmbl_17622	none	STRG.19894.1,blat.proc3825158.chain_926	2	blat.proc3825158.chain_925	1
scaffold_25	alt_acceptor	800990	800991	-	asmbl_34005	none	blat.proc3825162.chain_509	1	STRG.27136.1,STRG.27136.3,STRG.27136.4,blat.proc3825162.chain_511	4
scaffold_3	alternate_exon	12579182	12580666	+	asmbl_40410	none	STRG.3649.1,blat.proc3825166.chain_171	2	blat.proc3825166.chain_170	1
scaffold_1	retained_intron	3270179	3270864	-	asmbl_141	none	blat.proc3825148.chain_202	1	STRG.204.1,blat.proc3825148.chain_203,blat.proc3825148.chain_204	3
scaffold_5	alternate_exon	7320077	7320648	+	asmbl_45490,asmbl_45491,asmbl_45492	none	STRG.6129.1,STRG.6129.2,blat.proc3825166.chain_2350	3	Trinity_GG_20663_c0_g1_i1,Trinity_GG_20663_c0_g1_i2,blat.proc3825166.chain_2348,blat.proc3825166.chain_2349	4
scaffold_26	alt_donor	2926962	2926963	+	asmbl_34761	none	STRG.27977.2	1	STRG.27977.1,Trinity_GG_32743_c0_g1_i1,blat.proc3825178.chain_1025	3
scaffold_7	retained_intron	17339037	17339069	-	asmbl_51424,asmbl_51425,asmbl_51427	none	STRG.9613.1,STRG.9613.3,STRG.9613.4	3	STRG.9613.2	1
scaffold_44	alt_donor	21034	21035	-	asmbl_43712	none	STRG.30049.2	1	STRG.30049.1,blat.proc3825162.chain_3220	2
scaffold_23	skipped_exon	5583740	5584093	+	asmbl_31586	none	STRG.25931.1,Trinity_GG_31582_c0_g1_i1,blat.proc3825176.chain_2802	3	STRG.25931.4	1
scaffold_18	retained_exon	3918364	3918460	-	asmbl_19785	none	STRG.21203.5	1	STRG.21203.2	1
scaffold_13	alt_acceptor	396247	396248	-	asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9353	none	STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_364,blat.proc3825156.chain_366	13	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.5,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i3,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_351,blat.proc3825156.chain_354,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_369,blat.proc3825156.chain_370,blat.proc3825156.chain_371	19
scaffold_15	alt_donor	9600327	9600328	+	asmbl_15394	none	STRG.18475.2,blat.proc3825172.chain_3148	2	STRG.18475.1,blat.proc3825172.chain_3149	2
scaffold_3	alt_donor	10274721	10274722	+	asmbl_40248,asmbl_40251	none	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3	blat.proc3825164.chain_3728,blat.proc3825164.chain_3736	2
scaffold_17	retained_intron	7023727	7024347	+	asmbl_18886	none	Trinity_GG_28475_c0_g2_i1,blat.proc3825174.chain_1217,blat.proc3825174.chain_1218	3	Trinity_GG_28475_c0_g1_i1	1
scaffold_5	retained_exon	9084882	9084950	+	asmbl_45599,asmbl_45602,asmbl_45603,asmbl_45604,asmbl_45605	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6	blat.proc3825166.chain_2476,blat.proc3825166.chain_2477	2
scaffold_23	spliced_intron	4316512	4316611	+	asmbl_31498,asmbl_31499,asmbl_31502	none	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2780	4	Trinity_GG_31566_c0_g1_i7,blat.proc3825176.chain_2775	2
scaffold_12	retained_intron	7669932	7670077	+	asmbl_7787,asmbl_7788	none	STRG.14853.2,blat.proc3825170.chain_3398,blat.proc3825170.chain_3401	3	STRG.14853.1,Trinity_GG_25521_c0_g1_i3,Trinity_GG_25521_c0_g1_i4,blat.proc3825170.chain_3399,blat.proc3825170.chain_3400	5
scaffold_17	alt_acceptor	6611701	6611702	+	asmbl_18861	none	STRG.20316.1,blat.proc3825174.chain_1154	2	STRG.20316.2	1
scaffold_1	alt_donor	921843	921844	+	asmbl_1441	none	STRG.49.3,Trinity_GG_17320_c0_g1_i6,blat.proc3825164.chain_83	3	STRG.49.1,STRG.49.2,Trinity_GG_17320_c0_g1_i4,Trinity_GG_17320_c0_g1_i7,blat.proc3825164.chain_84,blat.proc3825164.chain_85	6
scaffold_14	alternate_exon	15542217	15546417	+	asmbl_12615	none	STRG.17794.1,Trinity_GG_27111_c0_g2_i2	2	Trinity_GG_27111_c0_g1_i1,blat.proc3825172.chain_2548	2
scaffold_8	skipped_exon	16397415	16398401	-	asmbl_52392	none	blat.proc3825152.chain_2851	1	STRG.10626.3,blat.proc3825152.chain_2849	2
scaffold_9	alt_donor	17743896	17743897	+	asmbl_54639,asmbl_54640,asmbl_54642,asmbl_54643,asmbl_54644	none	STRG.11863.1,STRG.11863.2,Trinity_GG_23880_c0_g1_i6,blat.proc3825170.chain_563,blat.proc3825170.chain_564,blat.proc3825170.chain_566,blat.proc3825170.chain_567,blat.proc3825170.chain_569	8	STRG.11863.3,blat.proc3825170.chain_565	2
scaffold_6	alternate_exon	11562233	11562290	+	asmbl_47349	none	STRG.7954.1,Trinity_GG_21664_c0_g1_i2,blat.proc3825168.chain_397	3	STRG.7955.1,Trinity_GG_21664_c1_g1_i1,blat.proc3825168.chain_398	3
scaffold_8	spliced_intron	16274198	16274331	-	asmbl_52380,asmbl_52381,asmbl_52383	none	STRG.10619.1,STRG.10619.2,blat.proc3825152.chain_2812,blat.proc3825152.chain_2813,blat.proc3825152.chain_2814	5	Trinity_GG_5880_c0_g1_i3,blat.proc3825152.chain_2815	2
scaffold_26	alternate_exon	7488320	7488449	+	asmbl_35115	none	STRG.28384.4,Trinity_GG_33001_c0_g2_i1,blat.proc3825178.chain_1473	3	STRG.28384.2,blat.proc3825178.chain_1471,blat.proc3825178.chain_1472	3
scaffold_8	spliced_intron	7446652	7446732	-	asmbl_51904,asmbl_51905	none	STRG.10069.1,blat.proc3825152.chain_2247,blat.proc3825152.chain_2249	3	blat.proc3825152.chain_2248	1
scaffold_17	spliced_intron	7038519	7038718	-	asmbl_18025,asmbl_18027	none	STRG.20368.1,STRG.20368.2,blat.proc3825158.chain_1345	3	blat.proc3825158.chain_1346	1
scaffold_13	alt_donor	15672345	15672346	+	asmbl_11528	none	STRG.16612.6	1	STRG.16612.1,STRG.16612.2,STRG.16612.3,STRG.16612.5	4
scaffold_5	spliced_intron	6853682	6853716	-	asmbl_44154	none	STRG.6100.2	1	STRG.6100.1	1
scaffold_28	alternate_exon	2197095	2198086	+	asmbl_37346	none	STRG.29390.3	1	Trinity_GG_33584_c1_g1_i1,blat.proc3825178.chain_2545	2
scaffold_2	retained_intron	7241458	7241554	+	asmbl_24557	none	blat.proc3825164.chain_2173	1	STRG.2055.1,blat.proc3825164.chain_2169,blat.proc3825164.chain_2170,blat.proc3825164.chain_2171,blat.proc3825164.chain_2172	5
scaffold_10	starts_in_intron	9035258	9035258	+	asmbl_3357	none	STRG.12652.2,blat.proc3825170.chain_1266	2	STRG.12652.1,Trinity_GG_24287_c0_g1_i2,blat.proc3825170.chain_1267	3
scaffold_13	retained_intron	11601123	11601382	+	asmbl_11288,asmbl_11293,asmbl_11296,asmbl_11297,asmbl_11298	none	blat.proc3825172.chain_1028,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1033,blat.proc3825172.chain_1034	5	STRG.16316.1,STRG.16316.3,STRG.16316.7,blat.proc3825172.chain_1029,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	6
scaffold_7	ends_in_intron	4497869	4497869	-	asmbl_50865	none	Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1303	2	STRG.8821.1,STRG.8821.2,blat.proc3825152.chain_1304	3
scaffold_2	retained_intron	6301801	6302073	-	asmbl_23189	none	Trinity_GG_1055_c0_g1_i1,Trinity_GG_1055_c0_g1_i3,blat.proc3825148.chain_1883,blat.proc3825148.chain_1884	4	STRG.1994.1,Trinity_GG_1055_c0_g1_i2,blat.proc3825148.chain_1882	3
scaffold_9	retained_intron	9664373	9664460	-	asmbl_55230	none	blat.proc3825152.chain_3619	1	STRG.11345.1	1
scaffold_7	spliced_intron	12649977	12650578	-	asmbl_51259	none	STRG.9385.1,blat.proc3825152.chain_1733	2	STRG.9385.2,blat.proc3825152.chain_1732	2
scaffold_2	alternate_exon	7874655	7880737	+	asmbl_24588	none	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2	Trinity_GG_18501_c0_g1_i20,blat.proc3825164.chain_2293	2
scaffold_6	retained_intron	16613086	16613686	+	asmbl_47713	none	STRG.8389.2,blat.proc3825168.chain_799	2	STRG.8389.1,blat.proc3825168.chain_796,blat.proc3825168.chain_797,blat.proc3825168.chain_798	4
scaffold_18	spliced_intron	5563424	5563617	-	asmbl_19852,asmbl_19853,asmbl_19855	none	STRG.21309.1,STRG.21309.2,Trinity_GG_11924_c1_g1_i1,Trinity_GG_11924_c1_g1_i6,Trinity_GG_11924_c1_g1_i8,blat.proc3825158.chain_2237,blat.proc3825158.chain_2239	7	STRG.21309.3,Trinity_GG_11924_c1_g1_i2,blat.proc3825158.chain_2236	3
scaffold_7	alt_donor	14730156	14730157	+	asmbl_50400	none	STRG.9506.2	1	STRG.9506.1,Trinity_GG_22593_c0_g1_i1,blat.proc3825168.chain_2030	3
scaffold_26	starts_in_intron	750720	750720	-	asmbl_35393	none	STRG.27874.1	1	blat.proc3825162.chain_1164	1
scaffold_13	retained_intron	663297	663385	-	asmbl_9366	none	Trinity_GG_8668_c0_g1_i6,blat.proc3825156.chain_314	2	STRG.15453.1,STRG.15453.2,Trinity_GG_8668_c0_g1_i2,Trinity_GG_8668_c0_g1_i3,Trinity_GG_8668_c0_g1_i4,Trinity_GG_8668_c0_g1_i5,blat.proc3825156.chain_312,blat.proc3825156.chain_313,blat.proc3825156.chain_315,blat.proc3825156.chain_316	10
scaffold_22	alternate_exon	6217104	6222120	-	asmbl_29325	none	STRG.24984.4	1	STRG.24984.2	1
scaffold_16	retained_exon	3710861	3710953	-	asmbl_16996	none	blat.proc3825158.chain_307	1	STRG.19178.1,blat.proc3825158.chain_308	2
scaffold_13	alt_acceptor	6137549	6137550	-	asmbl_9775	none	STRG.15919.1,Trinity_GG_8952_c0_g1_i3,blat.proc3825156.chain_809	3	STRG.15919.2	1
scaffold_17	starts_in_intron	8220043	8220043	+	asmbl_18952	none	STRG.20449.2	1	STRG.20449.1,blat.proc3825174.chain_1239,blat.proc3825174.chain_1242,blat.proc3825174.chain_1244,blat.proc3825174.chain_1245,blat.proc3825174.chain_1248	6
scaffold_5	alt_donor	4773760	4773761	-	asmbl_44012	none	STRG.5941.4	1	STRG.5941.1,STRG.5941.3	2
scaffold_6	starts_in_intron	8585167	8585167	+	asmbl_47159	none	Trinity_GG_21555_c0_g1_i9,blat.proc3825168.chain_170	2	STRG.7739.1,STRG.7739.2,blat.proc3825168.chain_173	3
scaffold_8	starts_in_intron	6751954	6751954	-	asmbl_51887	none	Trinity_GG_5603_c0_g1_i2,blat.proc3825152.chain_2309	2	STRG.10045.1,blat.proc3825152.chain_2310	2
scaffold_9	retained_exon	6867066	6867131	-	asmbl_55082,asmbl_55083	none	STRG.11198.1,Trinity_GG_6158_c0_g1_i5,blat.proc3825152.chain_3340,blat.proc3825152.chain_3341	4	blat.proc3825152.chain_3343	1
scaffold_1	retained_intron	14274143	14274240	+	asmbl_2369	none	blat.proc3825164.chain_1210	1	STRG.1023.1,STRG.1023.2,blat.proc3825164.chain_1208,blat.proc3825164.chain_1209	4
scaffold_16	alt_acceptor	4148802	4148803	+	asmbl_16179	none	STRG.19230.2	1	STRG.19230.1,STRG.19230.3,Trinity_GG_27835_c0_g1_i1,blat.proc3825174.chain_113	4
scaffold_8	alt_acceptor	6115125	6115126	+	asmbl_52939	none	STRG.10015.2,Trinity_GG_22863_c0_g1_i1,blat.proc3825168.chain_2540	3	STRG.10015.1,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	3
scaffold_13	retained_intron	4457659	4457733	+	asmbl_10795	none	Trinity_GG_25976_c0_g2_i1,blat.proc3825172.chain_506	2	STRG.15770.1,STRG.15770.2,STRG.15770.3,STRG.15770.4,Trinity_GG_25976_c0_g2_i2,blat.proc3825172.chain_507,blat.proc3825172.chain_509,blat.proc3825172.chain_511	8
scaffold_19	alt_donor	13035678	13035679	-	asmbl_22585	none	STRG.22625.3,blat.proc3825158.chain_3449	2	STRG.22625.1,blat.proc3825158.chain_3450	2
scaffold_19	alt_acceptor	13134663	13134664	-	asmbl_22602	none	STRG.22634.1	1	blat.proc3825158.chain_3463	1
scaffold_13	starts_in_intron	2342075	2342075	+	asmbl_10594,asmbl_10595	none	STRG.15564.11,STRG.15564.12	2	STRG.15564.2,STRG.15564.4,STRG.15564.5	3
scaffold_26	ends_in_intron	5380831	5380831	-	asmbl_35606	none	Trinity_GG_15762_c0_g1_i2,blat.proc3825162.chain_1407	2	STRG.28242.1,blat.proc3825162.chain_1405	2
scaffold_23	retained_intron	2315712	2315927	+	asmbl_31391	none	STRG.25706.2,Trinity_GG_31496_c0_g1_i4,blat.proc3825176.chain_2645	3	STRG.25706.1,Trinity_GG_31496_c0_g1_i2,blat.proc3825176.chain_2643	3
scaffold_5	alt_donor	10196617	10196618	-	asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44327	none	STRG.6323.1,STRG.6323.2,blat.proc3825150.chain_2527,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2533	6	blat.proc3825150.chain_2531	1
scaffold_21	starts_in_intron	11273118	11273118	-	asmbl_28116	none	blat.proc3825160.chain_1829	1	STRG.24607.1,STRG.24607.2,STRG.24607.4,blat.proc3825160.chain_1823,blat.proc3825160.chain_1824,blat.proc3825160.chain_1825,blat.proc3825160.chain_1827	7
scaffold_5	spliced_intron	10171095	10171274	+	asmbl_45663	none	STRG.6320.1,blat.proc3825166.chain_2512	2	blat.proc3825166.chain_2513	1
scaffold_13	starts_in_intron	3735623	3735623	+	asmbl_10738	none	blat.proc3825172.chain_449	1	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_446,blat.proc3825172.chain_448	10
scaffold_21	starts_in_intron	439911	439911	+	asmbl_28259	none	Trinity_GG_30455_c0_g1_i1,blat.proc3825176.chain_939	2	STRG.23736.1,blat.proc3825176.chain_938	2
scaffold_4	retained_exon	7033834	7033980	+	asmbl_41449	none	STRG.4540.2	1	STRG.4540.1	1
scaffold_6	alt_donor	8172707	8172708	-	asmbl_48541	none	blat.proc3825152.chain_87	1	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_91,blat.proc3825152.chain_92	5
scaffold_10	starts_in_intron	5804406	5804406	+	asmbl_3202	none	Trinity_GG_24189_c0_g1_i1,blat.proc3825170.chain_1090	2	STRG.12401.1,blat.proc3825170.chain_1089	2
scaffold_10	skipped_exon	1292164	1295040	+	asmbl_2923	none	STRG.12028.1,blat.proc3825170.chain_725	2	STRG.12028.2	1
scaffold_19	starts_in_intron	1037764	1037764	+	asmbl_21230	none	blat.proc3825174.chain_2869	1	STRG.21896.1,STRG.21896.2,blat.proc3825174.chain_2870,blat.proc3825174.chain_2871	4
scaffold_4	starts_in_intron	1642812	1642812	+	asmbl_41124	none	Trinity_GG_19645_c0_g1_i1,blat.proc3825166.chain_646	2	STRG.4200.1,STRG.4200.2,Trinity_GG_19645_c0_g1_i2,blat.proc3825166.chain_647	4
scaffold_19	skipped_exon	5461618	5462863	+	asmbl_21373	none	STRG.22117.1,blat.proc3825174.chain_3160	2	blat.proc3825174.chain_3157	1
scaffold_9	alt_acceptor	16631195	16631196	+	asmbl_54616	none	STRG.11803.1,Trinity_GG_23900_c0_g1_i2,blat.proc3825170.chain_604	3	STRG.11803.2,Trinity_GG_23900_c0_g1_i1,blat.proc3825170.chain_603	3
scaffold_23	skipped_exon	4226097	4226699	-	asmbl_30850	none	STRG.25839.5	1	STRG.25839.1,STRG.25839.2,STRG.25839.3,blat.proc3825160.chain_2986,blat.proc3825160.chain_2987,blat.proc3825160.chain_2988,blat.proc3825160.chain_2989	7
scaffold_17	retained_intron	5124487	5126010	-	asmbl_17917	none	STRG.20241.1	1	blat.proc3825158.chain_1306	1
scaffold_15	alt_donor	165809	165810	+	asmbl_14947	none	STRG.17873.2	1	STRG.17873.1	1
scaffold_21	retained_exon	5519284	5519377	-	asmbl_27663	none	STRG.24083.1	1	STRG.24083.3	1
scaffold_9	retained_exon	5655560	5655667	+	asmbl_54058	none	STRG.11134.2	1	STRG.11134.1,blat.proc3825168.chain_3680	2
scaffold_27	alt_acceptor	1090462	1090463	+	asmbl_35986,asmbl_35988,asmbl_35989	none	STRG.28606.2,STRG.28606.3,blat.proc3825178.chain_1735,blat.proc3825178.chain_1736	4	STRG.28606.1,blat.proc3825178.chain_1734	2
scaffold_19	ends_in_intron	3561426	3561426	+	asmbl_21326,asmbl_21329	none	STRG.22045.4,blat.proc3825174.chain_3075	2	STRG.22045.1,STRG.22045.3,blat.proc3825174.chain_3074	3
scaffold_23	alternate_exon	248647	250271	-	asmbl_30571,asmbl_30572	none	STRG.25548.1,STRG.25548.3,blat.proc3825160.chain_2704,blat.proc3825160.chain_2705	4	STRG.25548.2,blat.proc3825160.chain_2706	2
scaffold_4	alt_donor	4414847	4414848	+	asmbl_41248	none	Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_845	2	STRG.4349.2,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_852	7
scaffold_8	alt_donor	16397526	16397527	-	asmbl_52387	none	STRG.10626.4,blat.proc3825152.chain_2846	2	blat.proc3825152.chain_2851	1
scaffold_25	starts_in_intron	3630431	3630431	+	asmbl_33440	none	blat.proc3825178.chain_432	1	STRG.27312.1,STRG.27312.2,STRG.27312.3,blat.proc3825178.chain_426,blat.proc3825178.chain_427,blat.proc3825178.chain_429,blat.proc3825178.chain_431	7
scaffold_1	alt_donor	12175362	12175363	+	asmbl_2191,asmbl_2192	none	STRG.839.1,STRG.839.2,blat.proc3825164.chain_1012,blat.proc3825164.chain_1013	4	STRG.839.3,STRG.839.4,blat.proc3825164.chain_1014,blat.proc3825164.chain_1016	4
scaffold_11	retained_exon	16485120	16485279	-	asmbl_7226	none	STRG.14339.3	1	STRG.14339.2	1
scaffold_13	spliced_intron	352660	353097	-	asmbl_9300,asmbl_9301,asmbl_9302,asmbl_9303	none	STRG.15440.1,Trinity_GG_8667_c0_g1_i11,Trinity_GG_8667_c0_g1_i6,Trinity_GG_8667_c0_g1_i7,Trinity_GG_8667_c0_g1_i9,blat.proc3825156.chain_305,blat.proc3825156.chain_307,blat.proc3825156.chain_309,blat.proc3825156.chain_311	9	blat.proc3825156.chain_308,blat.proc3825156.chain_310	2
scaffold_17	alt_acceptor	1727808	1727809	+	asmbl_18625	none	STRG.20007.1,blat.proc3825174.chain_839	2	STRG.20007.2	1
scaffold_19	alt_donor	12688769	12688770	-	asmbl_22527,asmbl_22529,asmbl_22530	none	STRG.22592.1,blat.proc3825158.chain_3366,blat.proc3825158.chain_3367,blat.proc3825158.chain_3369	4	STRG.22592.2,blat.proc3825158.chain_3368	2
scaffold_5	starts_in_intron	10892725	10892725	-	asmbl_44385,asmbl_44386	none	blat.proc3825150.chain_2461,blat.proc3825150.chain_2463	2	STRG.6367.1,STRG.6367.2,blat.proc3825150.chain_2460,blat.proc3825150.chain_2462,blat.proc3825150.chain_2465	5
scaffold_28	alternate_exon	3847545	3848607	-	asmbl_38180	none	STRG.29584.1	1	STRG.29584.2	1
scaffold_4	alt_acceptor	13076344	13076345	+	asmbl_41779	none	STRG.4947.5	1	STRG.4947.1,STRG.4947.2,STRG.4947.3,STRG.4947.4,blat.proc3825166.chain_1379,blat.proc3825166.chain_1380,blat.proc3825166.chain_1381,blat.proc3825166.chain_1382	8
scaffold_25	alternate_exon	2956234	2956243	-	asmbl_34076	none	blat.proc3825162.chain_581	1	STRG.27245.1,blat.proc3825162.chain_582	2
scaffold_13	starts_in_intron	362511	362511	-	asmbl_9311	none	Trinity_GG_8663_c0_g1_i14,blat.proc3825156.chain_292	2	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,STRG.15442.5,Trinity_GG_8663_c0_g1_i10,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g1_i22,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_294,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_297,blat.proc3825156.chain_298,blat.proc3825156.chain_300	17
scaffold_18	alt_acceptor	13150203	13150204	-	asmbl_20166	none	STRG.21756.3	1	STRG.21756.1	1
scaffold_16	alt_acceptor	11398452	11398453	-	asmbl_17341,asmbl_17343	none	STRG.19673.3,STRG.19673.4	2	STRG.19673.1,STRG.19673.6,STRG.19673.7,blat.proc3825158.chain_729	4
scaffold_1	spliced_intron	12953678	12953756	-	asmbl_783	none	STRG.923.3,blat.proc3825148.chain_898	2	STRG.923.1,STRG.923.2,blat.proc3825148.chain_897,blat.proc3825148.chain_899	4
scaffold_6	retained_intron	5438307	5438405	-	asmbl_48425	none	blat.proc3825150.chain_3705	1	STRG.7514.1,blat.proc3825150.chain_3704	2
scaffold_16	ends_in_intron	9894211	9894211	-	asmbl_17299	none	Trinity_GG_10962_c1_g1_i1,blat.proc3825158.chain_657	2	STRG.19579.1,blat.proc3825158.chain_655	2
scaffold_10	starts_in_intron	4240594	4240594	-	asmbl_4275	none	blat.proc3825154.chain_817	1	STRG.12259.1,blat.proc3825154.chain_818	2
scaffold_23	retained_intron	2610389	2611916	-	asmbl_30755	none	blat.proc3825160.chain_2924	1	STRG.25729.1,blat.proc3825160.chain_2923,blat.proc3825160.chain_2925,blat.proc3825160.chain_2926	4
scaffold_20	alternate_exon	239962	240099	-	asmbl_25471,asmbl_25472	none	STRG.22712.3,STRG.22712.4	2	STRG.22712.2	1
scaffold_20	ends_in_intron	3996823	3996823	-	asmbl_25716	none	Trinity_GG_12891_c0_g1_i1,blat.proc3825160.chain_181	2	STRG.23095.1,blat.proc3825160.chain_182	2
scaffold_27	alternate_exon	3090400	3091908	-	asmbl_36887,asmbl_36889	none	STRG.28796.2,STRG.28796.5,blat.proc3825162.chain_2065,blat.proc3825162.chain_2068	4	blat.proc3825162.chain_2066	1
scaffold_6	starts_in_intron	17493878	17493878	+	asmbl_47759	none	blat.proc3825168.chain_859	1	STRG.8447.1,Trinity_GG_21929_c0_g1_i1,blat.proc3825168.chain_857,blat.proc3825168.chain_858	4
scaffold_1	spliced_intron	4587875	4587986	+	asmbl_1674,asmbl_1676	none	STRG.283.1,blat.proc3825164.chain_317,blat.proc3825164.chain_318	3	Trinity_GG_17458_c0_g1_i1,blat.proc3825164.chain_316	2
scaffold_1	spliced_intron	5624546	5624630	-	asmbl_281	none	STRG.354.1,blat.proc3825148.chain_299	2	blat.proc3825148.chain_298	1
scaffold_8	retained_exon	15173927	15174010	-	asmbl_52329	none	STRG.10550.1,blat.proc3825152.chain_2806	2	STRG.10550.2	1
scaffold_7	retained_intron	15245671	15246051	+	asmbl_50419,asmbl_50421,asmbl_50422	none	STRG.9540.1,STRG.9540.2,blat.proc3825168.chain_2110,blat.proc3825168.chain_2111,blat.proc3825168.chain_2113	5	STRG.9540.3	1
scaffold_16	starts_in_intron	5750998	5750998	+	asmbl_16225	none	blat.proc3825174.chain_157	1	STRG.19319.1,STRG.19319.2,Trinity_GG_27853_c1_g1_i2,blat.proc3825174.chain_156,blat.proc3825174.chain_158	5
scaffold_13	starts_in_intron	10033777	10033777	+	asmbl_11228	none	Trinity_GG_26220_c0_g1_i2,blat.proc3825172.chain_993	2	STRG.16240.1,blat.proc3825172.chain_992	2
scaffold_14	retained_intron	5451413	5451514	+	asmbl_12014	none	blat.proc3825172.chain_1725	1	STRG.17020.1,Trinity_GG_26638_c0_g2_i2,blat.proc3825172.chain_1726	3
scaffold_16	alternate_exon	7241238	7241633	-	asmbl_17174	none	STRG.19399.6	1	STRG.19399.1,STRG.19399.2,STRG.19399.4,STRG.19399.5	4
scaffold_19	spliced_intron	12971908	12971989	-	asmbl_22576	none	Trinity_GG_12569_c0_g1_i3,blat.proc3825158.chain_3360	2	STRG.22618.1,STRG.22618.2,STRG.22618.3,Trinity_GG_12569_c0_g1_i4,Trinity_GG_12569_c0_g1_i5,Trinity_GG_12569_c0_g1_i6,blat.proc3825158.chain_3361,blat.proc3825158.chain_3363,blat.proc3825158.chain_3364	9
scaffold_12	retained_intron	4204687	4204911	+	asmbl_7586	none	STRG.14600.1,Trinity_GG_25384_c0_g1_i2,blat.proc3825170.chain_3172	3	STRG.14600.2,Trinity_GG_25384_c0_g1_i1,blat.proc3825170.chain_3173	3
scaffold_20	alt_donor	207498	207499	-	asmbl_25462	none	STRG.22702.1,blat.proc3825158.chain_3562	2	STRG.22702.2,blat.proc3825158.chain_3563	2
scaffold_14	spliced_intron	3161368	3161770	+	asmbl_11917	none	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2	Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	7
scaffold_20	retained_intron	11931029	11931277	+	asmbl_27106	none	blat.proc3825176.chain_838	1	STRG.23696.1,STRG.23696.3,blat.proc3825176.chain_836,blat.proc3825176.chain_837	4
scaffold_21	starts_in_intron	8131921	8131921	-	asmbl_27890	none	STRG.24349.1,blat.proc3825160.chain_1516	2	STRG.24349.5,blat.proc3825160.chain_1508,blat.proc3825160.chain_1509,blat.proc3825160.chain_1511,blat.proc3825160.chain_1512	5
scaffold_1	starts_in_intron	17647986	17647986	+	asmbl_2522	none	Trinity_GG_18050_c0_g1_i1,blat.proc3825164.chain_1394	2	STRG.1229.1,Trinity_GG_18050_c0_g1_i2,blat.proc3825164.chain_1393	3
scaffold_23	retained_exon	10700992	10701050	+	asmbl_31868	none	STRG.26258.2	1	STRG.26258.1	1
scaffold_2	starts_in_intron	15509647	15509647	-	asmbl_23638	none	blat.proc3825148.chain_2501	1	STRG.2513.1	1
scaffold_1	alt_donor	17729072	17729073	+	asmbl_2534	none	STRG.1245.1	1	STRG.1245.2,blat.proc3825164.chain_1409	2
scaffold_4	alt_donor	17709586	17709587	-	asmbl_43310	none	STRG.5367.1,Trinity_GG_2977_c0_g2_i1,blat.proc3825150.chain_1519	3	STRG.5367.2	1
scaffold_21	alternate_exon	256483	257152	-	asmbl_27287	none	Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_813	2	STRG.23725.4	1
scaffold_8	starts_in_intron	11849832	11849832	+	asmbl_53292,asmbl_53293	none	blat.proc3825168.chain_3018,blat.proc3825168.chain_3021	2	STRG.10390.3,STRG.10390.5,blat.proc3825168.chain_3016,blat.proc3825168.chain_3019,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022,blat.proc3825168.chain_3023,blat.proc3825168.chain_3027	8
scaffold_4	spliced_intron	6247748	6247873	+	asmbl_41381	none	STRG.4494.2,blat.proc3825166.chain_945	2	STRG.4494.1,STRG.4494.3,blat.proc3825166.chain_943,blat.proc3825166.chain_944	4
scaffold_9	alt_donor	16666346	16666347	-	asmbl_55608	none	STRG.11805.1	1	STRG.11805.2	1
scaffold_6	alt_donor	10898532	10898533	+	asmbl_47304,asmbl_47305	none	STRG.7907.1,STRG.7907.3,blat.proc3825168.chain_379,blat.proc3825168.chain_382	4	STRG.7907.2,Trinity_GG_21655_c0_g1_i1,blat.proc3825168.chain_381	3
scaffold_10	spliced_intron	10283708	10283975	-	asmbl_4717	none	blat.proc3825154.chain_1341	1	STRG.12719.3,Trinity_GG_7121_c0_g1_i1,blat.proc3825154.chain_1346	3
scaffold_5	skipped_exon	7410771	7411904	-	asmbl_44174	none	STRG.6142.3	1	STRG.6142.1,STRG.6142.2	2
scaffold_6	alt_acceptor	16607491	16607492	+	asmbl_47710	none	STRG.8386.2	1	STRG.8386.1	1
scaffold_18	alternate_exon	8883789	8885318	-	asmbl_20036	none	STRG.21551.1,blat.proc3825158.chain_2471	2	STRG.21551.2	1
scaffold_1	skipped_exon	4567214	4568661	-	asmbl_198,asmbl_200	none	STRG.285.1,STRG.285.2,blat.proc3825148.chain_153	3	STRG.285.3	1
scaffold_5	spliced_intron	18574353	18574611	+	asmbl_46274	none	STRG.6990.1,Trinity_GG_21161_c0_g1_i3,blat.proc3825166.chain_3215	3	blat.proc3825166.chain_3217	1
scaffold_28	skipped_exon	8412619	8414931	+	asmbl_37747	none	STRG.29918.2	1	STRG.29918.1,Trinity_GG_33871_c0_g1_i2,blat.proc3825178.chain_3062	3
scaffold_13	retained_intron	12253613	12253769	+	asmbl_11352,asmbl_11355	none	STRG.16359.4,blat.proc3825172.chain_1113	2	STRG.16359.1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1115	3
scaffold_23	skipped_exon	3436537	3437379	+	asmbl_31436	none	blat.proc3825176.chain_2673	1	STRG.25762.1,blat.proc3825176.chain_2674	2
scaffold_23	spliced_intron	5303670	5303795	+	asmbl_31555,asmbl_31557	none	STRG.25908.3,Trinity_GG_31605_c0_g1_i3,Trinity_GG_31605_c0_g1_i5,blat.proc3825176.chain_2847,blat.proc3825176.chain_2851	5	STRG.25908.1,STRG.25908.2,Trinity_GG_31605_c0_g1_i1,Trinity_GG_31605_c0_g1_i2,blat.proc3825176.chain_2848,blat.proc3825176.chain_2849	6
scaffold_4	starts_in_intron	1334492	1334492	-	asmbl_42370	none	blat.proc3825150.chain_392	1	STRG.4173.2,STRG.4173.3,STRG.4173.4,blat.proc3825150.chain_393,blat.proc3825150.chain_394,blat.proc3825150.chain_395	6
scaffold_17	spliced_intron	2566428	2566633	+	asmbl_18662	none	STRG.20057.1,blat.proc3825174.chain_935	2	Trinity_GG_28293_c0_g2_i2,blat.proc3825174.chain_933	2
scaffold_11	retained_intron	7924431	7924529	+	asmbl_5697,asmbl_5700	none	STRG.13804.2,STRG.13804.6,Trinity_GG_24903_c0_g1_i4,blat.proc3825170.chain_2322	4	STRG.13804.3,STRG.13804.5,Trinity_GG_24903_c0_g1_i2,blat.proc3825170.chain_2323	4
scaffold_15	alt_acceptor	4231071	4231072	+	asmbl_15135	none	blat.proc3825172.chain_2836	1	STRG.18172.1,blat.proc3825172.chain_2837,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842	5
scaffold_11	alt_acceptor	9810101	9810102	+	asmbl_5901	none	STRG.13993.1	1	STRG.13993.2,blat.proc3825170.chain_2500,blat.proc3825170.chain_2501	3
scaffold_2	retained_intron	14462273	14462391	-	asmbl_23604	none	blat.proc3825148.chain_2421	1	STRG.2446.1,blat.proc3825148.chain_2422	2
scaffold_28	skipped_exon	5390808	5391483	+	asmbl_37585,asmbl_37587	none	STRG.29687.3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866	3	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868,blat.proc3825178.chain_2869	6
scaffold_26	retained_intron	7774100	7774213	+	asmbl_35145	none	Trinity_GG_33026_c0_g1_i5,blat.proc3825178.chain_1508	2	blat.proc3825178.chain_1507	1
scaffold_4	ends_in_intron	1916940	1916940	+	asmbl_41141	none	blat.proc3825166.chain_673	1	STRG.4209.1,blat.proc3825166.chain_674	2
scaffold_14	spliced_intron	176800	176929	-	asmbl_12785,asmbl_12786	none	STRG.16708.1,blat.proc3825156.chain_1507,blat.proc3825156.chain_1509	3	STRG.16708.2	1
scaffold_5	retained_intron	7708243	7708325	+	asmbl_45500,asmbl_45502,asmbl_45503	none	STRG.6149.1,STRG.6149.2,blat.proc3825166.chain_2364,blat.proc3825166.chain_2365	4	Trinity_GG_20669_c0_g1_i3,blat.proc3825166.chain_2366	2
scaffold_5	spliced_intron	10534403	10534511	-	asmbl_44362	none	STRG.6342.3	1	blat.proc3825150.chain_2540	1
scaffold_23	starts_in_intron	272986	272986	-	asmbl_30576	none	blat.proc3825160.chain_2689	1	STRG.25550.1,blat.proc3825160.chain_2688,blat.proc3825160.chain_2691	3
scaffold_28	skipped_exon	7234548	7235090	+	asmbl_37643	none	STRG.29785.1,blat.proc3825178.chain_2930	2	blat.proc3825178.chain_2932	1
scaffold_3	spliced_intron	4889766	4890090	+	asmbl_40038	none	blat.proc3825164.chain_3433	1	STRG.3183.4,Trinity_GG_19105_c1_g1_i6,blat.proc3825164.chain_3436	3
scaffold_8	starts_in_intron	12697575	12697575	+	asmbl_53335	none	blat.proc3825168.chain_3032	1	STRG.10443.1,blat.proc3825168.chain_3031	2
scaffold_3	retained_exon	13986481	13986906	-	asmbl_39317	none	STRG.3742.1,blat.proc3825148.chain_3649	2	STRG.3742.2,blat.proc3825148.chain_3650	2
scaffold_23	starts_in_intron	2200062	2200062	-	asmbl_30704	none	STRG.25691.1,blat.proc3825160.chain_2815	2	STRG.25691.3	1
scaffold_4	alt_acceptor	4690362	4690363	+	asmbl_41297,asmbl_41298,asmbl_41299,asmbl_41300	none	blat.proc3825166.chain_813,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_819	4	STRG.4379.1,blat.proc3825166.chain_818,blat.proc3825166.chain_820	3
scaffold_9	alt_donor	6905138	6905139	-	asmbl_55095	none	Trinity_GG_6207_c0_g1_i5,blat.proc3825152.chain_3441	2	STRG.11202.1,Trinity_GG_6207_c0_g1_i1,blat.proc3825152.chain_3443	3
scaffold_17	retained_intron	5403268	5403361	-	asmbl_17932	none	STRG.20259.1,Trinity_GG_11387_c0_g1_i2,blat.proc3825158.chain_1297	3	STRG.20259.2	1
scaffold_11	starts_in_intron	15178328	15178328	-	asmbl_7190	none	blat.proc3825154.chain_2837	1	STRG.14285.1,blat.proc3825154.chain_2836	2
scaffold_27	retained_intron	6782117	6782250	-	asmbl_37079	none	STRG.29050.4,blat.proc3825162.chain_2280	2	STRG.29050.3,blat.proc3825162.chain_2278	2
scaffold_5	retained_intron	10804890	10804988	+	asmbl_45697	none	blat.proc3825166.chain_2567	1	STRG.6357.1,STRG.6357.2,blat.proc3825166.chain_2566,blat.proc3825166.chain_2568,blat.proc3825166.chain_2570	5
scaffold_5	retained_intron	15766542	15766727	+	asmbl_46016,asmbl_46017,asmbl_46023	none	blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2920	3	STRG.6771.1,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	6
scaffold_2	alternate_exon	17464655	17464717	+	asmbl_25169	none	STRG.2632.1,blat.proc3825164.chain_2885	2	blat.proc3825164.chain_2886	1
scaffold_8	ends_in_intron	10864345	10864345	-	asmbl_52125	none	Trinity_GG_5758_c0_g2_i1,blat.proc3825152.chain_2588	2	STRG.10312.1,STRG.10312.2,STRG.10312.3	3
scaffold_17	alternate_exon	12394938	12395149	-	asmbl_18334	none	STRG.20766.1	1	STRG.20766.2	1
scaffold_25	alt_donor	7905468	7905469	-	asmbl_34415	none	blat.proc3825162.chain_920	1	blat.proc3825162.chain_919	1
scaffold_20	spliced_intron	9629566	9630290	+	asmbl_26870,asmbl_26871	none	STRG.23501.2,STRG.23501.3	2	STRG.23501.1,blat.proc3825176.chain_567	2
scaffold_1	alt_acceptor	5967854	5967855	-	asmbl_308	none	STRG.401.2,blat.proc3825148.chain_366	2	STRG.401.1,blat.proc3825148.chain_365	2
scaffold_25	alt_donor	4810463	4810464	+	asmbl_33531	none	STRG.27415.1,Trinity_GG_32429_c0_g1_i5,blat.proc3825178.chain_527	3	STRG.27415.2,Trinity_GG_32429_c0_g1_i2,blat.proc3825178.chain_523	3
scaffold_21	spliced_intron	3117600	3118025	-	asmbl_27512	none	blat.proc3825160.chain_995	1	STRG.23938.1,Trinity_GG_13300_c0_g1_i3,blat.proc3825160.chain_997	3
scaffold_20	starts_in_intron	6280074	6280074	-	asmbl_25832	none	STRG.23226.2,blat.proc3825160.chain_324	2	STRG.23226.1,blat.proc3825160.chain_325	2
scaffold_22	ends_in_intron	3785787	3785787	-	asmbl_29182	none	Trinity_GG_13863_c0_g1_i1	1	blat.proc3825160.chain_1992	1
scaffold_10	starts_in_intron	4151755	4151755	-	asmbl_4265	none	STRG.12252.1	1	STRG.12252.2	1
scaffold_21	starts_in_intron	8129917	8129917	-	asmbl_27893	none	blat.proc3825160.chain_1510	1	blat.proc3825160.chain_1511	1
scaffold_23	retained_intron	3233100	3233254	-	asmbl_30786	none	Trinity_GG_14405_c0_g1_i1,blat.proc3825160.chain_2916	2	STRG.25755.1,STRG.25755.2,STRG.25755.3,blat.proc3825160.chain_2917	4
scaffold_5	spliced_intron	18808969	18809061	+	asmbl_46288	none	STRG.7006.1,blat.proc3825166.chain_3209	2	STRG.7006.2	1
scaffold_21	alternate_exon	691873	692434	+	asmbl_28282	none	STRG.23756.3,Trinity_GG_30469_c0_g1_i1	2	STRG.23756.1	1
scaffold_22	starts_in_intron	4367196	4367196	+	asmbl_29997	none	Trinity_GG_31022_c0_g1_i1,blat.proc3825176.chain_1915	2	STRG.24856.1,STRG.24856.2,Trinity_GG_31022_c0_g1_i2,blat.proc3825176.chain_1916	4
scaffold_4	alternate_exon	17911725	17911866	-	asmbl_43327	none	STRG.5387.3	1	blat.proc3825150.chain_1543,blat.proc3825150.chain_1544	2
scaffold_11	spliced_intron	4639501	4639586	+	asmbl_5488	none	STRG.13546.1,blat.proc3825170.chain_2088	2	blat.proc3825170.chain_2087	1
scaffold_27	starts_in_intron	4800455	4800455	-	asmbl_36971,asmbl_36972	none	STRG.28911.2,blat.proc3825162.chain_2138	2	STRG.28911.1,Trinity_GG_16198_c0_g1_i2,blat.proc3825162.chain_2139	3
scaffold_27	alternate_exon	5682566	5687604	+	asmbl_36356,asmbl_36357,asmbl_36359	none	STRG.28977.1,STRG.28977.3,STRG.28977.4,Trinity_GG_33317_c0_g1_i3,Trinity_GG_33317_c1_g1_i1,blat.proc3825178.chain_2111,blat.proc3825178.chain_2113,blat.proc3825178.chain_2115,blat.proc3825178.chain_2116	9	STRG.28977.2,blat.proc3825178.chain_2112	2
scaffold_13	alt_acceptor	3528445	3528446	+	asmbl_10701,asmbl_10702,asmbl_10703,asmbl_10704	none	STRG.15676.1,blat.proc3825172.chain_361,blat.proc3825172.chain_362,blat.proc3825172.chain_363,blat.proc3825172.chain_364	5	STRG.15676.2	1
scaffold_21	ends_in_intron	7446165	7446165	+	asmbl_28737	none	blat.proc3825176.chain_1489	1	STRG.24275.1,STRG.24275.2,blat.proc3825176.chain_1490	3
scaffold_25	spliced_intron	6324156	6324245	-	asmbl_34356,asmbl_34359	none	STRG.27519.1,blat.proc3825162.chain_938,blat.proc3825162.chain_942	3	STRG.27519.2,blat.proc3825162.chain_940,blat.proc3825162.chain_943	3
scaffold_8	starts_in_intron	10489813	10489813	-	asmbl_52105	none	blat.proc3825152.chain_2460	1	STRG.10291.1,blat.proc3825152.chain_2458,blat.proc3825152.chain_2459	3
scaffold_13	ends_in_intron	6431120	6431120	-	asmbl_9795	none	STRG.15943.2	1	STRG.15943.1,blat.proc3825156.chain_850	2
scaffold_22	alternate_exon	11153343	11153408	-	asmbl_29651	none	STRG.25447.2	1	STRG.25447.1,Trinity_GG_14198_c0_g1_i1,blat.proc3825160.chain_2530	3
scaffold_3	retained_exon	19885176	19885238	-	asmbl_39671,asmbl_39672	none	STRG.4100.1,Trinity_GG_2243_c1_g1_i1,Trinity_GG_2243_c1_g1_i7,blat.proc3825150.chain_244,blat.proc3825150.chain_246	5	STRG.4100.3,STRG.4100.4,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_245	4
scaffold_14	spliced_intron	12752822	12753014	-	asmbl_13596,asmbl_13603	none	STRG.17591.1,blat.proc3825156.chain_2476	2	STRG.17591.2,STRG.17591.3,blat.proc3825156.chain_2474,blat.proc3825156.chain_2477	4
scaffold_3	spliced_intron	14186116	14186271	-	asmbl_39327,asmbl_39330,asmbl_39331	none	STRG.3761.2,STRG.3761.3,STRG.3761.5,blat.proc3825148.chain_3666	4	STRG.3761.1,STRG.3761.4,blat.proc3825148.chain_3664	3
scaffold_8	alt_donor	11849733	11849734	+	asmbl_53288	none	STRG.10390.5	1	STRG.10390.4,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3019,blat.proc3825168.chain_3027,blat.proc3825168.chain_3028	5
scaffold_9	alt_donor	2801650	2801651	+	asmbl_53859,asmbl_53860,asmbl_53861,asmbl_53863,asmbl_53867	none	STRG.10918.1,STRG.10918.2,STRG.10918.4,STRG.10918.5,STRG.10918.6,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3430,blat.proc3825168.chain_3431	8	blat.proc3825168.chain_3428	1
scaffold_23	alternate_exon	5616090	5619809	-	asmbl_30927	none	STRG.25937.3,blat.proc3825160.chain_3058	2	Trinity_GG_14487_c0_g1_i1,blat.proc3825160.chain_3056	2
scaffold_10	spliced_intron	11601926	11602115	+	asmbl_3474,asmbl_3475,asmbl_3476,asmbl_3477,asmbl_3486	none	STRG.12815.1,STRG.12815.2,STRG.12815.3,STRG.12815.4,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1429	7	blat.proc3825170.chain_1424	1
scaffold_1	retained_intron	12453045	12453262	+	asmbl_2225,asmbl_2226	none	blat.proc3825164.chain_1033,blat.proc3825164.chain_1034	2	STRG.860.1,blat.proc3825164.chain_1032	2
scaffold_4	starts_in_intron	16539093	16539093	-	asmbl_43191	none	blat.proc3825150.chain_1417	1	STRG.5230.1,STRG.5230.2,blat.proc3825150.chain_1418,blat.proc3825150.chain_1419	4
scaffold_4	spliced_intron	7267306	7267957	+	asmbl_41483,asmbl_41486	none	STRG.4561.5,STRG.4561.6,Trinity_GG_19860_c0_g1_i3,blat.proc3825166.chain_1049	4	STRG.4561.7,Trinity_GG_19860_c0_g1_i2,Trinity_GG_19860_c0_g1_i4,blat.proc3825166.chain_1047,blat.proc3825166.chain_1048	5
scaffold_149	spliced_intron	1774	1875	+	asmbl_13900	none	Trinity_GG_34029_c0_g1_i2,blat.proc3825178.chain_3307	2	STRG.30192.1,STRG.30192.2,Trinity_GG_34029_c0_g1_i1,blat.proc3825178.chain_3305,blat.proc3825178.chain_3306	5
scaffold_11	alt_acceptor	6997535	6997536	-	asmbl_6752	none	STRG.13719.1	1	STRG.13719.2	1
scaffold_18	retained_intron	281385	282108	+	asmbl_20285	none	STRG.20984.3,Trinity_GG_28852_c1_g1_i1,blat.proc3825174.chain_1904	3	STRG.20984.1,blat.proc3825174.chain_1903	2
scaffold_14	skipped_exon	9271820	9273885	-	asmbl_13361	none	STRG.17338.5	1	STRG.17338.1,STRG.17338.2,STRG.17338.3,STRG.17338.4,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2203,blat.proc3825156.chain_2204,blat.proc3825156.chain_2207	9
scaffold_14	alt_acceptor	583761	583762	+	asmbl_11772	none	STRG.16740.3	1	STRG.16740.2,Trinity_GG_26527_c0_g1_i1,blat.proc3825172.chain_1519	3
scaffold_8	spliced_intron	16499747	16501670	-	asmbl_52403,asmbl_52404,asmbl_52411,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52419,asmbl_52420,asmbl_52421	none	STRG.10629.1,STRG.10629.3,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2928,blat.proc3825152.chain_2929,blat.proc3825152.chain_2932,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2941	10	STRG.10629.2,blat.proc3825152.chain_2931,blat.proc3825152.chain_2939	3
scaffold_11	retained_intron	3767796	3767816	-	asmbl_6578,asmbl_6580	none	Trinity_GG_7568_c0_g1_i3,Trinity_GG_7568_c0_g1_i8,Trinity_GG_7568_c0_g1_i9	3	STRG.13508.2	1
scaffold_44	alt_donor	30863	30864	-	asmbl_43715	none	STRG.30048.3	1	STRG.30048.1,STRG.30048.2,blat.proc3825162.chain_3218	3
scaffold_18	spliced_intron	11326733	11326957	+	asmbl_20943	none	STRG.21676.2	1	STRG.21676.1,blat.proc3825174.chain_2683,blat.proc3825174.chain_2691	3
scaffold_14	alternate_exon	11059267	11059357	-	asmbl_13442	none	STRG.17441.1,blat.proc3825156.chain_2255	2	STRG.17441.2	1
scaffold_22	ends_in_intron	508794	508794	-	asmbl_29098	none	Trinity_GG_13790_c0_g1_i12,blat.proc3825160.chain_1864	2	STRG.24702.1,STRG.24702.5,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i15,Trinity_GG_13790_c0_g1_i5,Trinity_GG_13790_c0_g1_i9,blat.proc3825160.chain_1860,blat.proc3825160.chain_1861,blat.proc3825160.chain_1865,blat.proc3825160.chain_1866,blat.proc3825160.chain_1869	12
scaffold_26	spliced_intron	8995725	8995801	+	asmbl_35192	none	STRG.28464.2,blat.proc3825178.chain_1568	2	STRG.28464.1	1
scaffold_27	spliced_intron	8919877	8919990	+	asmbl_36479	none	blat.proc3825178.chain_2293	1	STRG.29131.1,Trinity_GG_33416_c0_g1_i1,blat.proc3825178.chain_2294	3
scaffold_21	alt_acceptor	4654505	4654506	-	asmbl_27579	none	STRG.24014.2	1	STRG.24014.1,blat.proc3825160.chain_1142	2
scaffold_18	spliced_intron	206330	206510	+	asmbl_20274,asmbl_20276	none	STRG.20974.3,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1919	3	Trinity_GG_28858_c0_g1_i1,blat.proc3825174.chain_1923	2
scaffold_28	spliced_intron	2724883	2725090	+	asmbl_37407,asmbl_37408	none	STRG.29459.1,STRG.29459.2	2	STRG.29459.3,Trinity_GG_33661_c1_g1_i6	2
scaffold_22	ends_in_intron	6956714	6956714	-	asmbl_29351,asmbl_29355	none	STRG.25024.5,blat.proc3825160.chain_2159,blat.proc3825160.chain_2160	3	STRG.25024.1,STRG.25024.2,STRG.25024.3	3
scaffold_28	retained_intron	232029	232204	+	asmbl_37260	none	blat.proc3825178.chain_2481	1	STRG.29253.2	1
scaffold_2	spliced_intron	14193353	14193458	-	asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23570,asmbl_23571	none	STRG.2416.1,STRG.2416.2,STRG.2416.3,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	5	blat.proc3825148.chain_2413	1
scaffold_9	starts_in_intron	11424278	11424278	-	asmbl_55285	none	blat.proc3825152.chain_3697	1	STRG.11463.1,blat.proc3825152.chain_3698	2
scaffold_19	alternate_exon	7704905	7706190	+	asmbl_21488	none	STRG.22255.2,Trinity_GG_29606_c0_g2_i1,blat.proc3825174.chain_3258	3	STRG.22255.1,STRG.22255.3,blat.proc3825174.chain_3256,blat.proc3825174.chain_3257	4
scaffold_6	alternate_exon	1739682	1740497	+	asmbl_46733	none	blat.proc3825150.chain_3232	1	blat.proc3825150.chain_3229	1
scaffold_15	alternate_exon	15347372	15347915	+	asmbl_15752	none	STRG.18919.4,blat.proc3825172.chain_3554	2	STRG.18919.2	1
scaffold_25	alt_donor	4810572	4810573	+	asmbl_33530	none	STRG.27415.2,Trinity_GG_32429_c0_g1_i2,blat.proc3825178.chain_523	3	STRG.27415.1,Trinity_GG_32429_c0_g1_i5,blat.proc3825178.chain_527	3
scaffold_10	ends_in_intron	1710064	1710064	-	asmbl_4078	none	Trinity_GG_6687_c0_g1_i1	1	STRG.12030.1,STRG.12030.2	2
scaffold_9	starts_in_intron	8963725	8963725	+	asmbl_54189	none	Trinity_GG_23611_c0_g1_i1,blat.proc3825170.chain_86	2	STRG.11286.1,Trinity_GG_23611_c0_g1_i3,blat.proc3825170.chain_85	3
scaffold_10	ends_in_intron	13524240	13524240	-	asmbl_4899	none	blat.proc3825154.chain_1462	1	STRG.12951.1,blat.proc3825154.chain_1460,blat.proc3825154.chain_1461	3
scaffold_11	ends_in_intron	4867332	4867332	+	asmbl_5533	none	blat.proc3825170.chain_2122	1	STRG.13586.1,blat.proc3825170.chain_2121	2
scaffold_27	alt_acceptor	1090465	1090466	+	asmbl_35987	none	STRG.28606.1,blat.proc3825178.chain_1734	2	STRG.28606.2,STRG.28606.3,blat.proc3825178.chain_1735,blat.proc3825178.chain_1736	4
scaffold_11	alternate_exon	8790359	8790429	-	asmbl_6878	none	blat.proc3825170.chain_2484	1	STRG.13904.2	1
scaffold_4	skipped_exon	7150900	7151964	+	asmbl_41465,asmbl_41466	none	blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	2	STRG.4559.1,STRG.4559.3,STRG.4559.4	3
scaffold_1	alternate_exon	5732722	5732914	-	asmbl_291,asmbl_292,asmbl_293	none	STRG.388.2,blat.proc3825148.chain_359,blat.proc3825148.chain_360,blat.proc3825148.chain_361	4	STRG.388.1	1
scaffold_1	retained_exon	5963990	5964225	+	asmbl_1805,asmbl_1807	none	STRG.400.1,STRG.400.2,blat.proc3825164.chain_540	3	STRG.400.3	1
scaffold_2	retained_intron	897724	898862	+	asmbl_24148,asmbl_24150	none	STRG.1569.2,STRG.1569.3,Trinity_GG_18211_c0_g1_i5,blat.proc3825164.chain_1718	4	STRG.1569.1,Trinity_GG_18211_c0_g1_i3,Trinity_GG_18211_c0_g1_i4,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721,blat.proc3825164.chain_1722	6
scaffold_1	retained_intron	18279633	18279766	-	asmbl_1098	none	STRG.1279.2	1	STRG.1279.3,blat.proc3825148.chain_1283	2
scaffold_12	retained_intron	12003833	12004558	-	asmbl_8846,asmbl_8847	none	STRG.15112.2,STRG.15112.3,blat.proc3825154.chain_3633,blat.proc3825154.chain_3634	4	STRG.15112.1,Trinity_GG_8447_c0_g1_i1,blat.proc3825154.chain_3632	3
scaffold_17	skipped_exon	2355039	2358464	+	asmbl_18641	none	STRG.20030.6	1	STRG.20030.1,blat.proc3825174.chain_907	2
scaffold_22	retained_intron	4227359	4227697	-	asmbl_29218	none	blat.proc3825160.chain_2074	1	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	10
scaffold_6	alternate_exon	12994820	13003403	-	asmbl_48865	none	blat.proc3825152.chain_488	1	STRG.8068.7,blat.proc3825152.chain_494	2
scaffold_2	retained_intron	16362712	16362791	+	asmbl_25126	none	Trinity_GG_18765_c0_g1_i2,blat.proc3825164.chain_2855	2	STRG.2576.1,Trinity_GG_18765_c0_g1_i1,blat.proc3825164.chain_2854	3
scaffold_6	alt_acceptor	4152202	4152203	-	asmbl_48291	none	STRG.7390.2	1	STRG.7390.1,blat.proc3825150.chain_3533	2
scaffold_14	starts_in_intron	4704237	4704237	-	asmbl_13067	none	blat.proc3825156.chain_1839	1	STRG.17007.1,blat.proc3825156.chain_1838	2
scaffold_12	skipped_exon	10532534	10534377	+	asmbl_7928	none	STRG.15021.2	1	STRG.15021.1,Trinity_GG_25582_c0_g1_i2,blat.proc3825170.chain_3526	3
scaffold_1	spliced_intron	6299428	6299553	-	asmbl_347,asmbl_348	none	STRG.427.1,STRG.427.2,blat.proc3825148.chain_327,blat.proc3825148.chain_330,blat.proc3825148.chain_331	5	STRG.427.3,blat.proc3825148.chain_325	2
scaffold_10	ends_in_intron	7668678	7668678	+	asmbl_3288,asmbl_3289,asmbl_3290	none	STRG.12555.3,blat.proc3825170.chain_1181,blat.proc3825170.chain_1182	3	STRG.12555.1,STRG.12555.2,blat.proc3825170.chain_1183	3
scaffold_5	alt_donor	1548522	1548523	-	asmbl_43860	none	STRG.5712.2	1	STRG.5712.1	1
scaffold_14	spliced_intron	7495217	7495625	+	asmbl_12167	none	STRG.17193.4	1	STRG.17193.1,blat.proc3825172.chain_1881	2
scaffold_12	retained_intron	7626418	7626858	-	asmbl_8610	none	STRG.14843.1,Trinity_GG_8248_c0_g1_i2,blat.proc3825154.chain_3290	3	blat.proc3825154.chain_3291	1
scaffold_8	alt_donor	9875726	9875727	+	asmbl_53126	none	STRG.10232.1,blat.proc3825168.chain_2797	2	STRG.10232.2,blat.proc3825168.chain_2798	2
scaffold_7	starts_in_intron	12451321	12451321	-	asmbl_51228	none	Trinity_GG_5252_c0_g1_i7,blat.proc3825152.chain_1692	2	STRG.9354.1,STRG.9354.2,STRG.9354.3,Trinity_GG_5252_c0_g1_i20	4
scaffold_12	retained_intron	14123203	14123414	-	asmbl_8991,asmbl_8992	none	STRG.15244.3,Trinity_GG_8555_c0_g1_i1,Trinity_GG_8555_c0_g1_i3,blat.proc3825156.chain_77	4	STRG.15244.1,STRG.15244.2,blat.proc3825156.chain_75	3
scaffold_26	alt_donor	6018214	6018215	+	asmbl_35068	none	STRG.28321.1,blat.proc3825178.chain_1377	2	STRG.28321.2,blat.proc3825178.chain_1376	2
scaffold_18	retained_exon	10129688	10129978	+	asmbl_20902	none	STRG.21606.2,blat.proc3825174.chain_2643	2	STRG.21606.1,blat.proc3825174.chain_2644	2
scaffold_16	alternate_exon	8027309	8027875	-	asmbl_17217	none	blat.proc3825158.chain_594	1	Trinity_GG_10921_c0_g2_i1,blat.proc3825158.chain_596	2
scaffold_2	retained_intron	19521884	19522271	-	asmbl_23870	none	STRG.2811.1,Trinity_GG_1543_c0_g1_i2,Trinity_GG_1543_c0_g2_i1,blat.proc3825148.chain_2747,blat.proc3825148.chain_2750	5	STRG.2811.2	1
scaffold_4	starts_in_intron	12792543	12792543	+	asmbl_41756	none	blat.proc3825166.chain_1366	1	STRG.4935.1,STRG.4935.2,STRG.4935.3,blat.proc3825166.chain_1365,blat.proc3825166.chain_1369	5
scaffold_15	spliced_intron	15414145	15414258	+	asmbl_15777,asmbl_15778,asmbl_15781,asmbl_15784,asmbl_15785	none	STRG.18953.1,STRG.18953.5,STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3607,blat.proc3825172.chain_3610,blat.proc3825172.chain_3611	7	STRG.18953.2,STRG.18953.3,Trinity_GG_27701_c0_g1_i3,blat.proc3825172.chain_3613	4
scaffold_1	retained_exon	18765211	18765283	+	asmbl_2571	none	STRG.1311.2	1	STRG.1311.1,STRG.1311.3	2
scaffold_13	alt_donor	8116476	8116477	+	asmbl_11106	none	STRG.16092.1,Trinity_GG_26150_c0_g1_i1,blat.proc3825172.chain_850	3	STRG.16092.2,Trinity_GG_26150_c0_g1_i3,blat.proc3825172.chain_849	3
scaffold_23	spliced_intron	2127756	2128017	-	asmbl_30691,asmbl_30692	none	STRG.25683.1,STRG.25683.2,Trinity_GG_14361_c0_g1_i2,Trinity_GG_14361_c0_g1_i4,blat.proc3825160.chain_2846,blat.proc3825160.chain_2848	6	Trinity_GG_14361_c0_g1_i3,blat.proc3825160.chain_2847	2
scaffold_14	spliced_intron	2263794	2264034	-	asmbl_12929	none	STRG.16838.1,blat.proc3825156.chain_1656	2	blat.proc3825156.chain_1657	1
scaffold_10	alternate_exon	11969780	11972038	+	asmbl_3518	none	STRG.12838.5	1	STRG.12838.4,Trinity_GG_24389_c0_g1_i10,blat.proc3825170.chain_1449	3
scaffold_10	alt_acceptor	11970267	11970268	+	asmbl_3510	none	STRG.12838.6	1	STRG.12838.3	1
scaffold_24	alt_acceptor	10269351	10269352	+	asmbl_32550	none	STRG.26984.1,Trinity_GG_32226_c0_g1_i1,blat.proc3825178.chain_193	3	STRG.26984.2,Trinity_GG_32226_c0_g1_i2,blat.proc3825178.chain_192	3
scaffold_3	alt_donor	6189861	6189862	-	asmbl_38914	none	blat.proc3825148.chain_3124	1	STRG.3266.1,STRG.3266.2,blat.proc3825148.chain_3119,blat.proc3825148.chain_3121,blat.proc3825148.chain_3123,blat.proc3825148.chain_3125	6
scaffold_4	spliced_intron	12689403	12689673	-	asmbl_42949,asmbl_42951	none	STRG.4910.1,STRG.4910.2,blat.proc3825150.chain_1019	3	Trinity_GG_2694_c0_g1_i1,blat.proc3825150.chain_1020	2
scaffold_9	starts_in_intron	17608174	17608174	-	asmbl_55665	none	blat.proc3825154.chain_297	1	STRG.11851.1,STRG.11851.2,blat.proc3825154.chain_293,blat.proc3825154.chain_294,blat.proc3825154.chain_295,blat.proc3825154.chain_296	6
scaffold_20	alt_acceptor	10384666	10384667	+	asmbl_26954,asmbl_26955,asmbl_26960,asmbl_26961,asmbl_26962	none	STRG.23583.1,STRG.23583.2,STRG.23583.4,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_668,blat.proc3825176.chain_670,blat.proc3825176.chain_671	8	STRG.23583.3	1
scaffold_21	spliced_intron	4101489	4102411	+	asmbl_28502	none	STRG.24000.4	1	STRG.24000.5	1
scaffold_6	alt_donor	3385059	3385060	-	asmbl_48258,asmbl_48260	none	STRG.7350.2,blat.proc3825150.chain_3478	2	STRG.7350.1,blat.proc3825150.chain_3477,blat.proc3825150.chain_3479,blat.proc3825150.chain_3481	4
scaffold_19	starts_in_intron	4793125	4793125	-	asmbl_22130	none	STRG.22056.3,blat.proc3825158.chain_2886	2	STRG.22056.2,blat.proc3825158.chain_2885	2
scaffold_1	retained_intron	12754534	12756067	+	asmbl_2252	none	STRG.896.1,Trinity_GG_17878_c0_g1_i2,blat.proc3825164.chain_1094	3	STRG.896.3,Trinity_GG_17878_c0_g1_i3,blat.proc3825164.chain_1093	3
scaffold_3	starts_in_intron	14776807	14776807	-	asmbl_39421,asmbl_39422	none	blat.proc3825150.chain_37	1	STRG.3822.1,STRG.3822.2,blat.proc3825150.chain_40	3
scaffold_19	alternate_exon	4864607	4864705	+	asmbl_21346	none	STRG.22065.2	1	STRG.22065.1,STRG.22065.3,blat.proc3825174.chain_3068	3
scaffold_7	starts_in_intron	12452284	12452284	-	asmbl_51229	none	blat.proc3825152.chain_1695	1	STRG.9354.1,STRG.9354.2,STRG.9354.3,Trinity_GG_5252_c0_g1_i20	4
scaffold_12	retained_intron	16403693	16404417	+	asmbl_8168	none	STRG.15402.1,Trinity_GG_25733_c0_g1_i1,blat.proc3825172.chain_43	3	STRG.15402.2,STRG.15402.3,Trinity_GG_25733_c0_g1_i7,blat.proc3825172.chain_45	4
scaffold_4	starts_in_intron	8234412	8234412	-	asmbl_42765	none	Trinity_GG_2606_c0_g1_i2,blat.proc3825150.chain_879	2	STRG.4647.1,blat.proc3825150.chain_878	2
scaffold_26	alt_acceptor	5150601	5150602	+	asmbl_34964	none	Trinity_GG_32895_c0_g1_i1,blat.proc3825178.chain_1290	2	STRG.28221.1	1
scaffold_24	retained_intron	7864239	7864324	-	asmbl_33073	none	STRG.26842.1,blat.proc3825162.chain_223	2	blat.proc3825162.chain_224	1
scaffold_1	starts_in_intron	7174721	7174721	+	asmbl_1887	none	blat.proc3825164.chain_616	1	STRG.511.1,blat.proc3825164.chain_617	2
scaffold_14	retained_intron	12752822	12753014	-	asmbl_13595,asmbl_13597,asmbl_13598,asmbl_13602	none	STRG.17591.2,STRG.17591.3,blat.proc3825156.chain_2474,blat.proc3825156.chain_2477	4	STRG.17591.1,blat.proc3825156.chain_2476	2
scaffold_24	alt_donor	1946154	1946155	-	asmbl_32756	none	STRG.26421.4	1	STRG.26421.1,STRG.26421.2	2
scaffold_21	alt_acceptor	256003	256004	-	asmbl_27292	none	blat.proc3825160.chain_808	1	blat.proc3825160.chain_807	1
scaffold_11	starts_in_intron	8771685	8771685	+	asmbl_5842	none	Trinity_GG_24985_c0_g1_i2,blat.proc3825170.chain_2474	2	STRG.13896.1,blat.proc3825170.chain_2475	2
scaffold_8	retained_intron	7446652	7446732	-	asmbl_51906	none	blat.proc3825152.chain_2248	1	STRG.10069.1,blat.proc3825152.chain_2247,blat.proc3825152.chain_2249	3
scaffold_11	ends_in_intron	14503741	14503741	+	asmbl_6082	none	STRG.14245.1,blat.proc3825170.chain_2776	2	STRG.14245.2	1
scaffold_24	retained_intron	8711438	8711587	-	asmbl_33090	none	STRG.26877.2	1	STRG.26877.1,blat.proc3825162.chain_152	2
scaffold_6	spliced_intron	7173476	7173600	+	asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47058	none	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83	5	blat.proc3825168.chain_84	1
scaffold_2	retained_intron	14021377	14021829	+	asmbl_24869	none	Trinity_GG_18647_c0_g1_i3,blat.proc3825164.chain_2575,blat.proc3825164.chain_2576	3	STRG.2398.1,Trinity_GG_18647_c0_g1_i1,blat.proc3825164.chain_2574,blat.proc3825164.chain_2577	4
scaffold_14	retained_intron	11574210	11574361	-	asmbl_13496	none	STRG.17499.1,Trinity_GG_9808_c0_g2_i1,blat.proc3825156.chain_2305	3	STRG.17499.2,STRG.17499.3,STRG.17499.4,blat.proc3825156.chain_2302,blat.proc3825156.chain_2304	5
scaffold_10	alt_donor	11079734	11079735	+	asmbl_3446	none	STRG.12781.2	1	STRG.12781.1,blat.proc3825170.chain_1376	2
scaffold_21	starts_in_intron	7383749	7383749	+	asmbl_28729	none	blat.proc3825176.chain_1375	1	STRG.24260.1,blat.proc3825176.chain_1374	2
scaffold_21	skipped_exon	5279754	5281553	-	asmbl_27645,asmbl_27647	none	STRG.24066.3,STRG.24066.4,blat.proc3825160.chain_1167	3	STRG.24066.1,blat.proc3825160.chain_1166	2
scaffold_7	starts_in_intron	3374982	3374982	+	asmbl_49685	none	Trinity_GG_22125_c0_g1_i1,blat.proc3825168.chain_1226	2	STRG.8740.1,Trinity_GG_22125_c0_g1_i2,blat.proc3825168.chain_1225	3
scaffold_20	alt_donor	12072235	12072236	+	asmbl_27111	none	STRG.23705.1,blat.proc3825176.chain_898,blat.proc3825176.chain_900	3	STRG.23705.2,blat.proc3825176.chain_899	2
scaffold_23	retained_exon	7512954	7513091	-	asmbl_31032	none	STRG.26071.2,blat.proc3825160.chain_3241	2	STRG.26071.3,blat.proc3825160.chain_3240	2
scaffold_2	retained_exon	5200572	5200622	+	asmbl_24402	none	STRG.1940.3	1	STRG.1940.1,Trinity_GG_18384_c0_g1_i3,blat.proc3825164.chain_2048	3
scaffold_6	retained_intron	15095011	15095132	+	asmbl_47652	none	STRG.8271.1,Trinity_GG_21867_c0_g1_i1,blat.proc3825168.chain_757	3	STRG.8271.2	1
scaffold_21	starts_in_intron	2469839	2469839	-	asmbl_27455	none	blat.proc3825160.chain_1046	1	STRG.23874.1,STRG.23874.2,blat.proc3825160.chain_1043,blat.proc3825160.chain_1044,blat.proc3825160.chain_1045,blat.proc3825160.chain_1048	6
scaffold_11	spliced_intron	7049528	7049788	+	asmbl_5646,asmbl_5648,asmbl_5650,asmbl_5651	none	STRG.13733.2,STRG.13733.3,STRG.13733.5,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2273	7	Trinity_GG_24878_c0_g1_i6,blat.proc3825170.chain_2271	2
scaffold_21	retained_exon	255962	256741	-	asmbl_27283,asmbl_27284,asmbl_27288,asmbl_27295,asmbl_27296	none	STRG.23725.1,STRG.23725.2,STRG.23725.6,blat.proc3825160.chain_804,blat.proc3825160.chain_806,blat.proc3825160.chain_809	6	blat.proc3825160.chain_807	1
scaffold_17	spliced_intron	9867881	9867999	-	asmbl_18214,asmbl_18216	none	STRG.20601.3,blat.proc3825158.chain_1630	2	STRG.20601.1,STRG.20601.2,blat.proc3825158.chain_1631	3
scaffold_643	starts_in_intron	1634	1634	-	asmbl_49491	none	blat.proc3825162.chain_3524	1	STRG.30415.1,STRG.30415.2	2
scaffold_17	spliced_intron	8951543	8951643	+	asmbl_19048	none	STRG.20514.1,blat.proc3825174.chain_1376	2	blat.proc3825174.chain_1375	1
scaffold_1	alt_acceptor	863555	863556	+	asmbl_1431	none	STRG.38.2,Trinity_GG_17351_c0_g1_i4,blat.proc3825164.chain_138	3	STRG.38.1,Trinity_GG_17351_c0_g1_i2,blat.proc3825164.chain_140	3
scaffold_5	retained_intron	18259179	18259303	+	asmbl_46233	none	Trinity_GG_21150_c1_g1_i1,blat.proc3825166.chain_3199	2	STRG.6962.1,Trinity_GG_21150_c1_g1_i2,blat.proc3825166.chain_3200	3
scaffold_9	skipped_exon	644164	645342	+	asmbl_53783	none	STRG.10793.2	1	STRG.10793.1,STRG.10793.3,STRG.10793.4,blat.proc3825168.chain_3345	4
scaffold_19	alt_acceptor	614551	614552	+	asmbl_21192	none	STRG.21842.1,Trinity_GG_29397_c0_g1_i1,blat.proc3825174.chain_2892	3	STRG.21842.2	1
scaffold_5	spliced_intron	8917573	8917791	-	asmbl_44257	none	STRG.6232.2,blat.proc3825150.chain_2381	2	STRG.6232.1,blat.proc3825150.chain_2380	2
scaffold_11	alt_acceptor	8078023	8078024	-	asmbl_6824	none	STRG.13815.3,Trinity_GG_7709_c0_g1_i5,blat.proc3825154.chain_2331	3	STRG.13815.1,STRG.13815.2,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i3,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2326,blat.proc3825154.chain_2330,blat.proc3825154.chain_2332	10
scaffold_5	starts_in_intron	18350020	18350020	+	asmbl_46253	none	Trinity_GG_21142_c0_g1_i1	1	STRG.6966.1,Trinity_GG_21142_c0_g1_i2	2
scaffold_10	spliced_intron	5200984	5201075	-	asmbl_4345,asmbl_4346	none	STRG.12347.1,STRG.12347.2,blat.proc3825154.chain_913,blat.proc3825154.chain_914	4	blat.proc3825154.chain_912	1
scaffold_8	retained_exon	11297315	11298291	+	asmbl_53216,asmbl_53217	none	STRG.10343.2,Trinity_GG_23079_c0_g1_i2,blat.proc3825168.chain_2924	3	Trinity_GG_23079_c0_g1_i4,blat.proc3825168.chain_2925	2
scaffold_25	retained_intron	9119958	9120031	+	asmbl_33786	none	STRG.27725.4	1	STRG.27725.6	1
scaffold_3	alternate_exon	1448061	1448072	+	asmbl_39848	none	blat.proc3825164.chain_3190	1	STRG.2964.1,blat.proc3825164.chain_3191	2
scaffold_7	alt_donor	15647512	15647513	+	asmbl_50455	none	STRG.9559.3,blat.proc3825168.chain_2089	2	STRG.9559.1,STRG.9559.2,blat.proc3825168.chain_2088,blat.proc3825168.chain_2090,blat.proc3825168.chain_2092	5
scaffold_5	starts_in_intron	17330497	17330497	+	asmbl_46169	none	Trinity_GG_21103_c0_g1_i8,blat.proc3825166.chain_3103	2	blat.proc3825166.chain_3098,blat.proc3825166.chain_3104	2
scaffold_17	alt_donor	8615198	8615199	+	asmbl_19003,asmbl_19004,asmbl_19005,asmbl_19007	none	STRG.20473.1,STRG.20473.3,STRG.20473.4,STRG.20473.5,blat.proc3825174.chain_1334,blat.proc3825174.chain_1335,blat.proc3825174.chain_1337,blat.proc3825174.chain_1338,blat.proc3825174.chain_1339	9	blat.proc3825174.chain_1336	1
scaffold_18	spliced_intron	7682382	7682466	+	asmbl_20786	none	STRG.21474.4	1	STRG.21474.2,STRG.21474.3,Trinity_GG_29179_c0_g1_i14,Trinity_GG_29179_c0_g1_i7,Trinity_GG_29179_c0_g2_i1,blat.proc3825174.chain_2515,blat.proc3825174.chain_2516,blat.proc3825174.chain_2520	8
scaffold_27	alternate_exon	143096	144984	-	asmbl_36646	none	STRG.28551.2	1	STRG.28551.3,Trinity_GG_15968_c0_g1_i5,blat.proc3825162.chain_1771	3
scaffold_3	retained_exon	6077192	6078434	-	asmbl_38895,asmbl_38896	none	STRG.3258.2,STRG.3258.3,blat.proc3825148.chain_3126,blat.proc3825148.chain_3128	4	STRG.3258.1,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131	3
scaffold_6	alt_acceptor	10160579	10160580	-	asmbl_48667	none	STRG.7853.2	1	STRG.7853.1,blat.proc3825152.chain_228	2
scaffold_27	alternate_exon	5061307	5061363	-	asmbl_36985,asmbl_36986	none	Trinity_GG_16216_c0_g1_i1,Trinity_GG_16216_c0_g1_i3,blat.proc3825162.chain_2160,blat.proc3825162.chain_2162	4	STRG.28937.1,STRG.28937.2	2
scaffold_13	alt_acceptor	15372055	15372056	+	asmbl_11501	none	STRG.16584.3	1	STRG.16584.1,STRG.16584.2	2
scaffold_11	spliced_intron	13252911	13254374	-	asmbl_7122,asmbl_7123	none	STRG.14198.2,STRG.14198.3,blat.proc3825154.chain_2767,blat.proc3825154.chain_2771	4	STRG.14198.1,blat.proc3825154.chain_2772,blat.proc3825154.chain_2773	3
scaffold_13	alt_acceptor	10044691	10044692	+	asmbl_11230	none	blat.proc3825172.chain_1056,blat.proc3825172.chain_1057	2	STRG.16247.1,blat.proc3825172.chain_1058,blat.proc3825172.chain_1059	3
scaffold_3	alt_acceptor	13831842	13831843	-	asmbl_39306	none	blat.proc3825148.chain_3569	1	STRG.3724.1	1
scaffold_26	retained_intron	4679112	4679225	-	asmbl_35584	none	STRG.28192.2	1	STRG.28192.1	1
scaffold_14	alt_donor	12595129	12595130	+	asmbl_12434	none	STRG.17580.3	1	STRG.17580.1,blat.proc3825172.chain_2230,blat.proc3825172.chain_2231	3
scaffold_10	alternate_exon	9061441	9063085	-	asmbl_4666	none	STRG.12655.2,blat.proc3825154.chain_1198	2	STRG.12655.3,blat.proc3825154.chain_1203	2
scaffold_14	starts_in_intron	11436218	11436218	-	asmbl_13483	none	blat.proc3825156.chain_2273	1	STRG.17473.1,blat.proc3825156.chain_2275	2
scaffold_10	ends_in_intron	5147617	5147617	-	asmbl_4342	none	blat.proc3825154.chain_880	1	STRG.12334.1,blat.proc3825154.chain_881	2
scaffold_17	spliced_intron	1289822	1289896	-	asmbl_17679,asmbl_17680,asmbl_17682,asmbl_17683	none	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_972,blat.proc3825158.chain_973,blat.proc3825158.chain_975	6	Trinity_GG_11179_c0_g1_i6,blat.proc3825158.chain_971,blat.proc3825158.chain_976	3
scaffold_9	alt_acceptor	4160635	4160636	-	asmbl_54958	none	STRG.11019.2	1	STRG.11019.1,blat.proc3825152.chain_3281	2
scaffold_1	spliced_intron	12453045	12453262	+	asmbl_2224	none	STRG.860.1,blat.proc3825164.chain_1032	2	blat.proc3825164.chain_1033,blat.proc3825164.chain_1034	2
scaffold_22	alt_donor	4342442	4342443	+	asmbl_29978	none	STRG.24851.1,Trinity_GG_31045_c2_g1_i2,blat.proc3825176.chain_1951	3	STRG.24851.2,Trinity_GG_31045_c2_g1_i1,blat.proc3825176.chain_1952	3
scaffold_24	alt_acceptor	9121612	9121613	+	asmbl_32517	none	STRG.26939.2,blat.proc3825178.chain_97	2	STRG.26939.1,Trinity_GG_32182_c0_g1_i4,blat.proc3825178.chain_95	3
scaffold_17	spliced_intron	9868526	9868619	-	asmbl_18213,asmbl_18214,asmbl_18215,asmbl_18216	none	STRG.20601.1,STRG.20601.3,blat.proc3825158.chain_1630,blat.proc3825158.chain_1631	4	STRG.20601.2	1
scaffold_16	alt_donor	7218765	7218766	-	asmbl_17177	none	STRG.19399.3	1	STRG.19399.1,STRG.19399.2	2
scaffold_23	retained_exon	4100534	4100716	-	asmbl_30833	none	STRG.25826.2	1	STRG.25826.1	1
scaffold_15	spliced_intron	14891299	14891623	+	asmbl_15706	none	STRG.18902.2,Trinity_GG_27623_c0_g1_i3,blat.proc3825172.chain_3432	3	STRG.18902.1,blat.proc3825172.chain_3434,blat.proc3825172.chain_3435	3
scaffold_5	alt_acceptor	6627539	6627540	-	asmbl_44121,asmbl_44122	none	STRG.6067.1,STRG.6067.3,blat.proc3825150.chain_2255,blat.proc3825150.chain_2256	4	STRG.6067.2	1
scaffold_21	starts_in_intron	5958812	5958812	-	asmbl_27709	none	blat.proc3825160.chain_1288	1	STRG.24127.1,blat.proc3825160.chain_1286	2
scaffold_16	alt_acceptor	11337139	11337140	+	asmbl_16576	none	STRG.19664.3,blat.proc3825152.chain_406,blat.proc3825174.chain_605	3	STRG.19664.1,STRG.19664.4,blat.proc3825174.chain_603,blat.proc3825174.chain_604,blat.proc3825174.chain_606	5
scaffold_21	alternate_exon	8003456	8003556	-	asmbl_27881	none	STRG.24336.1,blat.proc3825160.chain_1501	2	STRG.24336.3,blat.proc3825160.chain_1502	2
scaffold_16	ends_in_intron	5797232	5797232	+	asmbl_16230	none	STRG.19326.2,Trinity_GG_27849_c0_g1_i3,blat.proc3825174.chain_149	3	STRG.19326.1,STRG.19326.3,Trinity_GG_27849_c0_g1_i1,Trinity_GG_27849_c0_g1_i2,Trinity_GG_27849_c0_g1_i4,blat.proc3825174.chain_147,blat.proc3825174.chain_148,blat.proc3825174.chain_150	8
scaffold_9	alt_donor	11889103	11889104	+	asmbl_54393,asmbl_54394	none	STRG.11516.1,STRG.11516.2	2	blat.proc3825170.chain_339	1
scaffold_1	ends_in_intron	11179849	11179849	+	asmbl_2077	none	Trinity_GG_17786_c0_g1_i2,blat.proc3825164.chain_910	2	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_906,blat.proc3825164.chain_908,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915,blat.proc3825164.chain_916	12
scaffold_1	retained_exon	14964720	14964791	+	asmbl_2418	none	STRG.1073.2	1	STRG.1073.1,blat.proc3825164.chain_1156	2
scaffold_16	alternate_exon	1251961	1252335	-	asmbl_16935,asmbl_16941	none	STRG.19087.4,blat.proc3825158.chain_225,blat.proc3825158.chain_226	3	STRG.19087.3	1
scaffold_2	starts_in_intron	6633586	6633586	-	asmbl_23215	none	Trinity_GG_1127_c0_g1_i1,blat.proc3825148.chain_2035	2	STRG.2030.1,STRG.2030.2,STRG.2030.3,blat.proc3825148.chain_2032,blat.proc3825148.chain_2033,blat.proc3825148.chain_2034,blat.proc3825148.chain_2037	7
scaffold_2	alt_acceptor	10376044	10376045	-	asmbl_23415,asmbl_23417	none	STRG.2210.1,blat.proc3825148.chain_2236,blat.proc3825148.chain_2238	3	STRG.2210.2	1
scaffold_2	retained_intron	15274444	15274538	+	asmbl_25009	none	Trinity_GG_18659_c1_g1_i2,blat.proc3825164.chain_2613	2	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2616,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7
scaffold_26	spliced_intron	5561589	5561755	+	asmbl_35024	none	STRG.28267.1,blat.proc3825178.chain_1303	2	STRG.28267.2,Trinity_GG_32902_c1_g1_i1,blat.proc3825178.chain_1304	3
scaffold_20	retained_exon	11481215	11482530	+	asmbl_27058	none	STRG.23653.1	1	STRG.23653.4	1
scaffold_2	alt_acceptor	4009094	4009095	+	asmbl_24328	none	STRG.1839.3	1	STRG.1839.1,blat.proc3825164.chain_1984,blat.proc3825164.chain_1985	3
scaffold_5	alt_donor	3592702	3592703	-	asmbl_43922	none	STRG.5831.3,blat.proc3825150.chain_2044	2	STRG.5831.2,STRG.5831.4,STRG.5831.5,blat.proc3825150.chain_2046	4
scaffold_8	retained_intron	10793464	10793568	+	asmbl_53183	none	STRG.10305.1,blat.proc3825168.chain_2848	2	STRG.10305.3,blat.proc3825168.chain_2847	2
scaffold_18	ends_in_intron	7740416	7740416	-	asmbl_19976	none	Trinity_GG_12003_c1_g1_i1,blat.proc3825158.chain_2371	2	STRG.21480.1,blat.proc3825158.chain_2369,blat.proc3825158.chain_2370	3
scaffold_4	retained_exon	13762796	13762984	-	asmbl_43003	none	STRG.4997.2,blat.proc3825150.chain_1144	2	STRG.4997.3	1
scaffold_19	spliced_intron	1039595	1040154	-	asmbl_22014	none	STRG.21897.2	1	STRG.21897.1	1
scaffold_19	alt_acceptor	12822372	12822373	-	asmbl_22547	none	blat.proc3825158.chain_3413	1	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	6
scaffold_5	alt_donor	11991388	11991389	-	asmbl_44430,asmbl_44433,asmbl_44434	none	STRG.6453.8,blat.proc3825150.chain_2611,blat.proc3825150.chain_2613	3	blat.proc3825150.chain_2616	1
scaffold_1	alt_acceptor	5769881	5769882	+	asmbl_1795	none	STRG.384.1,blat.proc3825164.chain_436	2	STRG.384.2,blat.proc3825164.chain_435	2
scaffold_22	starts_in_intron	4359086	4359086	+	asmbl_29988	none	blat.proc3825176.chain_1965	1	STRG.24857.1,STRG.24857.2,STRG.24857.3,blat.proc3825176.chain_1961,blat.proc3825176.chain_1962,blat.proc3825176.chain_1963,blat.proc3825176.chain_1964	7
scaffold_23	skipped_exon	2615438	2616744	-	asmbl_30756	none	blat.proc3825160.chain_2926	1	STRG.25729.1,STRG.25729.2,blat.proc3825160.chain_2923,blat.proc3825160.chain_2925,blat.proc3825160.chain_2928	5
scaffold_14	alt_acceptor	733745	733746	-	asmbl_12846	none	STRG.16745.1,blat.proc3825156.chain_1579	2	STRG.16745.2	1
scaffold_5	spliced_intron	6708882	6708998	-	asmbl_44131	none	Trinity_GG_3388_c0_g1_i2,blat.proc3825150.chain_2230	2	STRG.6077.1,STRG.6077.2,Trinity_GG_3388_c0_g1_i1,blat.proc3825150.chain_2231,blat.proc3825150.chain_2232	5
scaffold_27	alternate_exon	6706460	6706877	+	asmbl_36402	none	STRG.29044.2,blat.proc3825178.chain_2253	2	STRG.29044.1	1
scaffold_7	starts_in_intron	15288911	15288911	+	asmbl_50440	none	Trinity_GG_22623_c0_g1_i3,blat.proc3825168.chain_2082	2	STRG.9544.1,Trinity_GG_22623_c0_g1_i7,blat.proc3825168.chain_2084	3
scaffold_21	spliced_intron	4099856	4100642	+	asmbl_28502	none	STRG.24000.4	1	STRG.24000.3,blat.proc3825176.chain_1242	2
scaffold_17	spliced_intron	5074760	5074970	+	asmbl_18810	none	STRG.20233.1	1	Trinity_GG_28387_c0_g1_i1	1
scaffold_26	starts_in_intron	430590	430590	+	asmbl_34682	none	Trinity_GG_32687_c0_g2_i1,blat.proc3825178.chain_944	2	STRG.27868.1,blat.proc3825178.chain_942	2
scaffold_22	alt_acceptor	25385	25386	+	asmbl_29799	none	Trinity_GG_30926_c0_g1_i2,blat.proc3825176.chain_1755	2	STRG.24662.1,STRG.24662.2,Trinity_GG_30926_c0_g1_i1,Trinity_GG_30926_c0_g1_i4,blat.proc3825176.chain_1754,blat.proc3825176.chain_1756	6
scaffold_13	retained_intron	6616931	6617079	+	asmbl_10952,asmbl_10955	none	STRG.15957.1,blat.proc3825172.chain_680,blat.proc3825172.chain_681	3	blat.proc3825172.chain_682	1
scaffold_21	skipped_exon	6637284	6639368	+	asmbl_28683	none	STRG.24190.2	1	STRG.24190.1,blat.proc3825176.chain_1441	2
scaffold_4	alt_acceptor	8628161	8628162	+	asmbl_41567	none	STRG.4682.1,blat.proc3825166.chain_1140	2	STRG.4682.2,blat.proc3825166.chain_1139	2
scaffold_11	retained_intron	10398841	10399063	+	asmbl_5942	none	blat.proc3825170.chain_2499	1	STRG.14049.1,blat.proc3825170.chain_2496,blat.proc3825170.chain_2498	3
scaffold_15	alt_acceptor	14513304	14513305	+	asmbl_15686	none	STRG.18865.2,blat.proc3825172.chain_3487	2	STRG.18865.1,STRG.18865.3,blat.proc3825172.chain_3488,blat.proc3825172.chain_3489	4
scaffold_3	spliced_intron	13988445	13988538	+	asmbl_40479	none	STRG.3744.4	1	STRG.3744.1,STRG.3744.2,STRG.3744.3,STRG.3744.5,blat.proc3825166.chain_189,blat.proc3825166.chain_191	6
scaffold_2	starts_in_intron	16293766	16293766	+	asmbl_25117	none	STRG.2564.3	1	STRG.2564.1,STRG.2564.2,blat.proc3825164.chain_2763,blat.proc3825164.chain_2764	4
scaffold_17	retained_exon	7047020	7047118	+	asmbl_18890	none	STRG.20370.3,blat.proc3825174.chain_1225,blat.proc3825174.chain_1227	3	STRG.20370.1,blat.proc3825174.chain_1223,blat.proc3825174.chain_1226	3
scaffold_25	skipped_exon	4467225	4469133	-	asmbl_34191	none	STRG.27380.1	1	STRG.27380.2	1
scaffold_2	alternate_exon	802050	802080	+	asmbl_24109	none	STRG.1557.2	1	STRG.1557.1,blat.proc3825164.chain_1697	2
scaffold_20	starts_in_intron	9498341	9498341	+	asmbl_26851	none	Trinity_GG_30283_c2_g1_i1,blat.proc3825176.chain_638	2	STRG.23489.1,STRG.23489.2,blat.proc3825176.chain_633,blat.proc3825176.chain_634	4
scaffold_15	skipped_exon	15857347	15857984	+	asmbl_15820	none	STRG.18973.3,Trinity_GG_27688_c0_g1_i12,blat.proc3825172.chain_3569	3	STRG.18973.1,STRG.18973.2,STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i5,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3568,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575,blat.proc3825172.chain_3576,blat.proc3825172.chain_3577	15
scaffold_16	retained_intron	4062380	4062655	-	asmbl_17047	none	Trinity_GG_10794_c0_g1_i1,blat.proc3825158.chain_353	2	STRG.19223.1,STRG.19223.2,blat.proc3825158.chain_352,blat.proc3825158.chain_354	4
scaffold_17	alt_acceptor	539180	539181	+	asmbl_18543,asmbl_18550	none	STRG.19902.1,blat.proc3825174.chain_788,blat.proc3825174.chain_789	3	STRG.19902.2	1
scaffold_15	starts_in_intron	14664797	14664797	+	asmbl_15697	none	Trinity_GG_27665_c0_g1_i3,blat.proc3825172.chain_3506	2	STRG.18882.2,Trinity_GG_27665_c0_g1_i4,blat.proc3825172.chain_3504	3
scaffold_19	alternate_exon	13233721	13233911	-	asmbl_22624	none	blat.proc3825158.chain_3424	1	STRG.22653.2,blat.proc3825158.chain_3427	2
scaffold_6	alt_acceptor	12976800	12976801	+	asmbl_47460,asmbl_47461,asmbl_47462	none	STRG.8057.1,STRG.8057.2,blat.proc3825168.chain_536,blat.proc3825168.chain_538,blat.proc3825168.chain_539	5	STRG.8057.3,blat.proc3825168.chain_537	2
scaffold_15	retained_intron	15414405	15414510	+	asmbl_15775,asmbl_15776,asmbl_15778,asmbl_15785	none	STRG.18953.2,STRG.18953.3,STRG.18953.5,STRG.18953.6,Trinity_GG_27701_c0_g1_i3,blat.proc3825172.chain_3611,blat.proc3825172.chain_3613	7	STRG.18953.1,STRG.18953.4,STRG.18953.7,blat.proc3825172.chain_3607,blat.proc3825172.chain_3608,blat.proc3825172.chain_3610,blat.proc3825172.chain_3612	7
scaffold_18	starts_in_intron	5550780	5550780	-	asmbl_19848	none	blat.proc3825158.chain_2217	1	STRG.21305.1	1
scaffold_7	spliced_intron	2734406	2734533	+	asmbl_49663	none	STRG.8703.1,blat.proc3825168.chain_1139	2	blat.proc3825168.chain_1141	1
scaffold_17	alternate_exon	6183482	6183633	-	asmbl_17970	none	STRG.20293.3	1	STRG.20293.1	1
scaffold_13	retained_intron	5136	5411	+	asmbl_10448,asmbl_10450,asmbl_10451,asmbl_10455	none	STRG.15424.1,STRG.15424.3,Trinity_GG_25787_c0_g1_i1,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,Trinity_GG_25787_c0_g1_i8,blat.proc3825172.chain_135,blat.proc3825172.chain_137,blat.proc3825172.chain_138,blat.proc3825172.chain_141	10	STRG.15424.2,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i4,blat.proc3825172.chain_134,blat.proc3825172.chain_139	5
scaffold_15	alt_donor	9879883	9879884	+	asmbl_15433	none	STRG.18504.2	1	STRG.18504.1,blat.proc3825172.chain_3136	2
scaffold_25	alt_acceptor	3585911	3585912	+	asmbl_33432	none	STRG.27302.2	1	STRG.27302.1,blat.proc3825178.chain_403	2
scaffold_19	retained_exon	6257255	6257617	+	asmbl_21404	none	STRG.22161.1,blat.proc3825174.chain_3102	2	blat.proc3825174.chain_3101	1
scaffold_19	ends_in_intron	11483550	11483550	-	asmbl_22407,asmbl_22408,asmbl_22413	none	Trinity_GG_12512_c0_g1_i13,Trinity_GG_12512_c0_g1_i4,blat.proc3825158.chain_3239,blat.proc3825158.chain_3240,blat.proc3825158.chain_3248	5	STRG.22486.2,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247	3
scaffold_2	alt_acceptor	30002	30003	+	asmbl_24060,asmbl_24061,asmbl_24063,asmbl_24064,asmbl_24065	none	STRG.1496.1,STRG.1496.3,Trinity_GG_18174_c0_g1_i10,Trinity_GG_18174_c0_g1_i4,blat.proc3825164.chain_1639,blat.proc3825164.chain_1641,blat.proc3825164.chain_1643,blat.proc3825164.chain_1645	8	Trinity_GG_18174_c0_g1_i1,blat.proc3825164.chain_1644	2
scaffold_1	ends_in_intron	8647146	8647146	-	asmbl_470	none	Trinity_GG_322_c2_g1_i1,blat.proc3825148.chain_590	2	STRG.568.1	1
scaffold_17	spliced_intron	3998584	3998705	+	asmbl_18756,asmbl_18760	none	STRG.20160.2,blat.proc3825174.chain_1035	2	STRG.20160.1,STRG.20160.3,STRG.20160.4,blat.proc3825174.chain_1032,blat.proc3825174.chain_1033,blat.proc3825174.chain_1034	6
scaffold_14	alternate_exon	15584128	15584415	+	asmbl_12635	none	STRG.17811.4	1	STRG.17811.5,STRG.17811.6	2
scaffold_16	retained_intron	8101538	8101645	-	asmbl_17234	none	blat.proc3825158.chain_606	1	STRG.19455.1,blat.proc3825158.chain_604	2
scaffold_27	ends_in_intron	3122167	3122167	+	asmbl_36186	none	blat.proc3825178.chain_1912	1	STRG.28798.1,blat.proc3825178.chain_1911	2
scaffold_5	starts_in_intron	817355	817355	+	asmbl_45103	none	STRG.5638.2	1	STRG.5638.1	1
scaffold_7	alternate_exon	8162448	8173017	+	asmbl_49959	none	STRG.9049.2,blat.proc3825168.chain_1535	2	STRG.9049.3,Trinity_GG_22317_c0_g2_i2,blat.proc3825168.chain_1533	3
scaffold_8	alt_acceptor	9374708	9374709	-	asmbl_52027	none	STRG.10202.6	1	STRG.10202.3,STRG.10202.4,STRG.10202.5,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463,blat.proc3825152.chain_2464	6
scaffold_22	spliced_intron	223722	223962	-	asmbl_29076	none	STRG.24683.4	1	STRG.24683.1,STRG.24683.2,STRG.24683.3,STRG.24683.5,blat.proc3825160.chain_1903,blat.proc3825160.chain_1904,blat.proc3825160.chain_1905,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	9
scaffold_27	retained_intron	3093328	3093432	-	asmbl_36889,asmbl_36891,asmbl_36892,asmbl_36894	none	STRG.28796.2,STRG.28796.4,Trinity_GG_16154_c0_g1_i2,blat.proc3825162.chain_2063,blat.proc3825162.chain_2066,blat.proc3825162.chain_2068	6	STRG.28796.6	1
scaffold_8	starts_in_intron	16386514	16386514	+	asmbl_53452	none	Trinity_GG_23226_c2_g1_i1,blat.proc3825168.chain_3199	2	STRG.10620.3,STRG.10620.4,Trinity_GG_23226_c0_g1_i3,blat.proc3825168.chain_3195	4
scaffold_20	alternate_exon	3261279	3265030	+	asmbl_26526	none	STRG.23056.1,blat.proc3825176.chain_218	2	STRG.23056.2	1
scaffold_3	alt_acceptor	17109994	17109995	+	asmbl_40648	none	STRG.3952.1	1	STRG.3952.2	1
scaffold_7	starts_in_intron	12455845	12455845	-	asmbl_51230	none	Trinity_GG_5252_c0_g3_i1,blat.proc3825152.chain_1696	2	STRG.9354.1,STRG.9354.2,STRG.9354.3,STRG.9354.4	4
scaffold_500	retained_intron	1334	1625	+	asmbl_46495	none	blat.proc3825178.chain_3437	1	STRG.30357.1,STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6,Trinity_GG_34112_c0_g1_i2,blat.proc3825178.chain_3435	7
scaffold_13	retained_exon	15512103	15512242	+	asmbl_11512	none	STRG.16593.1,Trinity_GG_26459_c0_g1_i1,blat.proc3825172.chain_1398,blat.proc3825172.chain_1400	4	STRG.16593.2	1
scaffold_14	alternate_exon	9314212	9314266	-	asmbl_13380	none	STRG.17333.2,Trinity_GG_9703_c0_g1_i1,blat.proc3825156.chain_2115	3	STRG.17333.1	1
scaffold_6	alternate_exon	2480020	2482637	-	asmbl_48127,asmbl_48128	none	STRG.7245.1,STRG.7245.4,blat.proc3825150.chain_3360,blat.proc3825150.chain_3361	4	STRG.7245.2	1
scaffold_21	skipped_exon	8538516	8539657	-	asmbl_27932	none	blat.proc3825160.chain_1549	1	STRG.24387.1,STRG.24387.2,STRG.24387.3,blat.proc3825160.chain_1546,blat.proc3825160.chain_1547,blat.proc3825160.chain_1548,blat.proc3825160.chain_1675	7
scaffold_22	starts_in_intron	4212630	4212630	-	asmbl_29211	none	blat.proc3825160.chain_2029	1	STRG.24835.1,blat.proc3825160.chain_2028	2
scaffold_6	spliced_intron	8173665	8173844	-	asmbl_48537,asmbl_48538,asmbl_48540,asmbl_48542,asmbl_48543,asmbl_48544,asmbl_48545	none	STRG.7706.1,Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93,blat.proc3825152.chain_95	9	Trinity_GG_4351_c0_g1_i6,blat.proc3825152.chain_94	2
scaffold_19	alternate_exon	13087650	13088543	-	asmbl_22592	none	STRG.22626.1,blat.proc3825158.chain_3446	2	STRG.22626.2	1
scaffold_17	alt_donor	9689009	9689010	+	asmbl_19122	none	STRG.20589.2,Trinity_GG_28575_c0_g1_i3,blat.proc3825174.chain_1425	3	STRG.20589.1,STRG.20589.3,Trinity_GG_28575_c0_g1_i1,Trinity_GG_28575_c0_g1_i2,blat.proc3825174.chain_1424,blat.proc3825174.chain_1426	6
scaffold_1	retained_intron	11395793	11396048	+	asmbl_2094,asmbl_2097	none	STRG.748.2,blat.proc3825164.chain_917	2	STRG.748.1,blat.proc3825164.chain_919	2
scaffold_23	alt_acceptor	4493374	4493375	+	asmbl_31513	none	STRG.25865.1,blat.proc3825176.chain_2789	2	STRG.25865.2	1
scaffold_8	skipped_exon	17454124	17455338	+	asmbl_53478	none	STRG.10670.1,Trinity_GG_23215_c0_g1_i2,blat.proc3825168.chain_3163	3	STRG.10670.2,Trinity_GG_23215_c0_g1_i1,blat.proc3825168.chain_3162	3
scaffold_19	alternate_exon	13131512	13131552	-	asmbl_22601	none	STRG.22634.2,Trinity_GG_12601_c0_g1_i1,blat.proc3825158.chain_3462	3	STRG.22634.1,blat.proc3825158.chain_3463	2
scaffold_6	starts_in_intron	10184354	10184354	-	asmbl_48672	none	blat.proc3825152.chain_235	1	STRG.7858.1,STRG.7858.2,Trinity_GG_4441_c0_g1_i3,blat.proc3825152.chain_233	4
scaffold_15	alternate_exon	14634503	14634907	-	asmbl_14734	none	STRG.18877.3,blat.proc3825156.chain_3748	2	blat.proc3825156.chain_3747	1
scaffold_24	retained_exon	6727435	6727650	-	asmbl_32965,asmbl_32969,asmbl_32970	none	STRG.26723.1,blat.proc3825162.chain_100,blat.proc3825162.chain_95,blat.proc3825162.chain_98	4	STRG.26723.2,blat.proc3825162.chain_99	2
scaffold_23	alt_acceptor	4091581	4091582	+	asmbl_31478	none	STRG.25819.2,blat.proc3825176.chain_2754	2	STRG.25819.1,Trinity_GG_31556_c0_g1_i1,blat.proc3825176.chain_2755	3
scaffold_22	spliced_intron	237472	237591	+	asmbl_29825	none	STRG.24681.1,blat.proc3825176.chain_1793	2	blat.proc3825176.chain_1792	1
scaffold_7	alt_acceptor	12082575	12082576	+	asmbl_50218,asmbl_50221	none	STRG.9316.2,STRG.9316.4	2	STRG.9316.1,STRG.9316.3	2
scaffold_7	starts_in_intron	5846388	5846388	-	asmbl_50893	none	blat.proc3825152.chain_1281	1	STRG.8892.1,blat.proc3825152.chain_1279,blat.proc3825152.chain_1280	3
scaffold_9	alt_donor	13607398	13607399	+	asmbl_54508	none	STRG.11647.4	1	STRG.11647.3,blat.proc3825170.chain_453,blat.proc3825170.chain_454	3
scaffold_19	starts_in_intron	5636878	5636878	-	asmbl_22175	none	Trinity_GG_12336_c1_g1_i5,blat.proc3825158.chain_2949	2	blat.proc3825158.chain_2946	1
scaffold_4	ends_in_intron	4114390	4114390	-	asmbl_42482	none	Trinity_GG_2368_c0_g2_i1,blat.proc3825150.chain_483	2	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_477,blat.proc3825150.chain_479,blat.proc3825150.chain_480,blat.proc3825150.chain_481,blat.proc3825150.chain_482	8
scaffold_18	starts_in_intron	4756576	4756576	+	asmbl_20552	none	Trinity_GG_29015_c0_g1_i1,blat.proc3825174.chain_2202	2	STRG.21269.1,blat.proc3825174.chain_2201	2
scaffold_9	ends_in_intron	9672483	9672483	-	asmbl_55228	none	Trinity_GG_6295_c0_g1_i8,blat.proc3825152.chain_3620	2	STRG.11345.1	1
scaffold_8	retained_intron	11760968	11761438	-	asmbl_52164	none	STRG.10380.1,blat.proc3825152.chain_2603	2	STRG.10380.2	1
scaffold_12	alternate_exon	15441074	15447452	-	asmbl_9085	none	STRG.15351.1,blat.proc3825156.chain_208	2	STRG.15351.2,Trinity_GG_8614_c0_g1_i2,blat.proc3825156.chain_207,blat.proc3825156.chain_209	4
scaffold_8	alt_acceptor	6904346	6904347	+	asmbl_52968,asmbl_52972	none	STRG.10051.1,STRG.10051.2,blat.proc3825168.chain_2537	3	STRG.10051.3	1
scaffold_12	starts_in_intron	7296496	7296496	+	asmbl_7738	none	Trinity_GG_25491_c0_g1_i1,blat.proc3825170.chain_3347	2	STRG.14807.1	1
scaffold_9	starts_in_intron	13272231	13272231	+	asmbl_54486	none	Trinity_GG_23820_c0_g1_i1,blat.proc3825170.chain_471	2	STRG.11623.1	1
scaffold_7	starts_in_intron	8070998	8070998	+	asmbl_49953,asmbl_49955	none	STRG.9047.3,blat.proc3825168.chain_1527	2	STRG.9047.1,STRG.9047.2,blat.proc3825168.chain_1525,blat.proc3825168.chain_1526	4
scaffold_13	retained_intron	8831245	8831460	-	asmbl_9991	none	Trinity_GG_9044_c0_g1_i2,blat.proc3825156.chain_996	2	STRG.16159.1,Trinity_GG_9044_c0_g1_i3,blat.proc3825156.chain_998,blat.proc3825156.chain_999	4
scaffold_1	alt_acceptor	4239797	4239798	+	asmbl_1652,asmbl_1653,asmbl_1655	none	STRG.256.3,STRG.256.5,blat.proc3825164.chain_401	3	blat.proc3825164.chain_402	1
scaffold_28	alt_acceptor	4704618	4704619	-	asmbl_38223	none	STRG.29642.2	1	STRG.29642.1,blat.proc3825162.chain_2827	2
scaffold_17	alternate_exon	9976728	9991918	+	asmbl_19144,asmbl_19145	none	blat.proc3825174.chain_1488,blat.proc3825174.chain_1489	2	STRG.20615.2,STRG.20615.3	2
scaffold_13	alternate_exon	5454392	5456415	+	asmbl_10849	none	STRG.15841.1,blat.proc3825172.chain_518	2	STRG.15841.2,blat.proc3825172.chain_519	2
scaffold_1	spliced_intron	9294832	9294940	+	asmbl_1973,asmbl_1974,asmbl_1975	none	STRG.629.1,Trinity_GG_17708_c0_g1_i1,Trinity_GG_17708_c0_g1_i2,Trinity_GG_17708_c0_g1_i5,blat.proc3825164.chain_768,blat.proc3825164.chain_770,blat.proc3825164.chain_771	7	STRG.629.2	1
scaffold_1	alt_donor	11568031	11568032	-	asmbl_632,asmbl_636,asmbl_638	none	STRG.767.1,blat.proc3825148.chain_744,blat.proc3825148.chain_746,blat.proc3825148.chain_747	4	STRG.767.2,blat.proc3825148.chain_743,blat.proc3825148.chain_745	3
scaffold_6	alt_donor	16877083	16877084	-	asmbl_49169	none	STRG.8405.3,blat.proc3825152.chain_871	2	STRG.8405.2,blat.proc3825152.chain_872	2
scaffold_6	retained_intron	300061	300175	+	asmbl_46650	none	STRG.7091.4	1	STRG.7091.1,STRG.7091.2,STRG.7091.3	3
scaffold_6	spliced_intron	573670	573950	+	asmbl_46666	none	Trinity_GG_21206_c0_g1_i3,blat.proc3825166.chain_3278	2	STRG.7115.1,Trinity_GG_21206_c0_g1_i1,blat.proc3825166.chain_3279	3
scaffold_15	retained_intron	12422505	12422732	+	asmbl_15561,asmbl_15562	none	blat.proc3825172.chain_3323,blat.proc3825172.chain_3324	2	STRG.18696.1,blat.proc3825172.chain_3325,blat.proc3825172.chain_3326	3
scaffold_16	alternate_exon	3869734	3870581	-	asmbl_17008	none	STRG.19196.2,blat.proc3825158.chain_333	2	STRG.19196.3	1
scaffold_7	ends_in_intron	6189735	6189735	+	asmbl_49845,asmbl_49847	none	Trinity_GG_22230_c0_g1_i3,blat.proc3825168.chain_1409,blat.proc3825168.chain_1410	3	STRG.8912.1,STRG.8912.2,Trinity_GG_22230_c0_g1_i1,blat.proc3825168.chain_1408	4
scaffold_5	skipped_exon	10145770	10146230	-	asmbl_44316	none	STRG.6314.2	1	STRG.6314.1,blat.proc3825150.chain_2507,blat.proc3825150.chain_2508	3
scaffold_12	alt_acceptor	3100149	3100150	+	asmbl_7542	none	STRG.14550.2	1	STRG.14550.1,blat.proc3825170.chain_3074	2
scaffold_8	retained_intron	6028315	6028414	+	asmbl_52930	none	blat.proc3825168.chain_2614	1	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2613	4
scaffold_1	alt_donor	13813195	13813196	-	asmbl_845	none	STRG.991.1,blat.proc3825148.chain_987	2	STRG.991.2,blat.proc3825148.chain_988	2
scaffold_17	starts_in_intron	11510208	11510208	+	asmbl_19231	none	STRG.20696.1	1	blat.proc3825174.chain_1535	1
scaffold_27	alt_donor	6076817	6076818	+	asmbl_36374	none	STRG.29010.1,Trinity_GG_33370_c1_g1_i4,blat.proc3825178.chain_2221	3	STRG.29010.2,blat.proc3825178.chain_2222	2
scaffold_15	starts_in_intron	11302216	11302216	+	asmbl_15496	none	blat.proc3825172.chain_3165	1	STRG.18603.1,blat.proc3825172.chain_3162,blat.proc3825172.chain_3163,blat.proc3825172.chain_3166	4
scaffold_6	spliced_intron	384396	384552	+	asmbl_46655	none	STRG.7099.1,blat.proc3825166.chain_3258	2	blat.proc3825166.chain_3259	1
scaffold_5	alternate_exon	4630114	4631726	-	asmbl_43966	none	STRG.5917.2,blat.proc3825150.chain_2104	2	STRG.5917.3,Trinity_GG_3326_c0_g1_i1,blat.proc3825150.chain_2106	3
scaffold_9	retained_intron	11551049	11551499	-	asmbl_55295,asmbl_55296	none	STRG.11473.2,STRG.11473.3,blat.proc3825152.chain_3708,blat.proc3825152.chain_3710	4	STRG.11473.1,blat.proc3825152.chain_3707	2
scaffold_9	alt_donor	12009342	12009343	+	asmbl_54402	none	STRG.11526.2,Trinity_GG_23760_c3_g1_i1,blat.proc3825170.chain_361	3	STRG.11526.1,Trinity_GG_23760_c0_g1_i1,blat.proc3825170.chain_358	3
scaffold_12	alternate_exon	11329143	11329940	-	asmbl_8798	none	STRG.15071.1	1	STRG.15071.2	1
scaffold_18	ends_in_intron	6004441	6004441	+	asmbl_20655	none	blat.proc3825174.chain_2362	1	STRG.21369.1,blat.proc3825174.chain_2357,blat.proc3825174.chain_2358,blat.proc3825174.chain_2359	4
scaffold_14	alternate_exon	11755030	11755193	+	asmbl_12403	none	STRG.17519.1,blat.proc3825172.chain_2164	2	STRG.17519.2,blat.proc3825172.chain_2162	2
scaffold_24	spliced_intron	5882035	5882303	-	asmbl_32909,asmbl_32910,asmbl_32911,asmbl_32912	none	STRG.26654.1,STRG.26654.2,blat.proc3825162.chain_35,blat.proc3825162.chain_36,blat.proc3825162.chain_37	5	STRG.26654.3,blat.proc3825162.chain_34	2
scaffold_24	starts_in_intron	8544819	8544819	+	asmbl_32422	none	Trinity_GG_32154_c0_g1_i2,blat.proc3825178.chain_48	2	STRG.26866.1	1
scaffold_10	spliced_intron	10324675	10324702	-	asmbl_4725	none	blat.proc3825154.chain_1293	1	STRG.12724.1	1
scaffold_3	alternate_exon	10276587	10276906	+	asmbl_40253,asmbl_40255,asmbl_40256,asmbl_40257	none	STRG.3467.3,Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3727,blat.proc3825164.chain_3730,blat.proc3825164.chain_3732,blat.proc3825164.chain_3736	6	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3
scaffold_1	spliced_intron	907269	907587	-	asmbl_36	none	STRG.48.1	1	STRG.48.2	1
scaffold_14	alt_donor	6368162	6368163	+	asmbl_12072,asmbl_12074,asmbl_12075	none	STRG.17085.1,STRG.17085.3,blat.proc3825172.chain_1855,blat.proc3825172.chain_1856	4	STRG.17085.2,blat.proc3825172.chain_1854	2
scaffold_19	ends_in_intron	12473773	12473773	-	asmbl_22496	none	blat.proc3825158.chain_3388	1	STRG.22587.1,Trinity_GG_12581_c1_g1_i6,blat.proc3825158.chain_3390	3
scaffold_11	retained_exon	17086462	17086527	-	asmbl_7253	none	STRG.14373.4	1	STRG.14373.1,blat.proc3825154.chain_2882,blat.proc3825154.chain_2886	3
scaffold_17	retained_intron	2566428	2566633	+	asmbl_18664	none	Trinity_GG_28293_c0_g2_i2,blat.proc3825174.chain_933	2	STRG.20057.1,blat.proc3825174.chain_935	2
scaffold_28	retained_exon	6547487	6548040	-	asmbl_38355	none	STRG.29753.2	1	STRG.29753.4	1
scaffold_4	spliced_intron	7090140	7091175	+	asmbl_41460	none	STRG.4547.3,blat.proc3825166.chain_1040	2	STRG.4547.1,blat.proc3825166.chain_1039	2
scaffold_2	ends_in_intron	2882083	2882083	-	asmbl_22936	none	blat.proc3825148.chain_1669	1	STRG.1736.1,STRG.1736.2,STRG.1736.3,blat.proc3825148.chain_1666,blat.proc3825148.chain_1667,blat.proc3825148.chain_1668,blat.proc3825148.chain_1670,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672,blat.proc3825148.chain_1673,blat.proc3825148.chain_1674	11
scaffold_4	retained_intron	13072234	13072389	-	asmbl_42966	none	blat.proc3825150.chain_1125	1	STRG.4956.1,blat.proc3825150.chain_1126	2
scaffold_12	starts_in_intron	2661857	2661857	+	asmbl_7507	none	blat.proc3825170.chain_3086	1	blat.proc3825170.chain_3089	1
scaffold_27	ends_in_intron	974473	974473	+	asmbl_35972	none	Trinity_GG_33133_c0_g2_i1,blat.proc3825178.chain_1721	2	STRG.28595.1,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i3,Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1717,blat.proc3825178.chain_1718,blat.proc3825178.chain_1720	7
scaffold_9	spliced_intron	11815085	11815410	+	asmbl_54382,asmbl_54384	none	STRG.11498.1,blat.proc3825170.chain_315,blat.proc3825170.chain_316	3	Trinity_GG_23726_c0_g1_i4,blat.proc3825170.chain_314	2
scaffold_28	alt_acceptor	3069107	3069108	+	asmbl_37433,asmbl_37434	none	STRG.29516.2,STRG.29516.3,blat.proc3825178.chain_2700	3	STRG.29516.1,blat.proc3825178.chain_2699	2
scaffold_11	retained_intron	11785562	11785678	+	asmbl_5998	none	STRG.14099.3	1	STRG.14099.1	1
scaffold_17	alt_acceptor	789552	789553	+	asmbl_18575,asmbl_18576	none	STRG.19934.2,blat.proc3825174.chain_823	2	STRG.19934.1	1
scaffold_7	starts_in_intron	4056733	4056733	+	asmbl_49720	none	blat.proc3825168.chain_1256	1	STRG.8806.1,blat.proc3825168.chain_1257	2
scaffold_9	retained_intron	9369953	9370052	+	asmbl_54198	none	blat.proc3825170.chain_43	1	STRG.11291.1,blat.proc3825170.chain_41,blat.proc3825170.chain_42	3
scaffold_6	ends_in_intron	12554017	12554017	-	asmbl_48830	none	blat.proc3825152.chain_427	1	STRG.8017.1,STRG.8017.2,STRG.8017.3,blat.proc3825152.chain_421,blat.proc3825152.chain_423	5
scaffold_3	starts_in_intron	8176230	8176230	-	asmbl_39019	none	Trinity_GG_1828_c6_g1_i2	1	STRG.3440.1	1
scaffold_5	skipped_exon	15703896	15706366	+	asmbl_46010	none	STRG.6765.2	1	STRG.6765.1,blat.proc3825166.chain_2903,blat.proc3825166.chain_2904	3
scaffold_3	retained_exon	10628698	10628825	+	asmbl_40283,asmbl_40289	none	STRG.3513.4,STRG.3513.6,blat.proc3825164.chain_3689	3	STRG.3513.1,STRG.3513.7,blat.proc3825164.chain_3684	3
scaffold_6	spliced_intron	15759616	15760387	-	asmbl_49082,asmbl_49084,asmbl_49085	none	STRG.8318.1,blat.proc3825152.chain_757,blat.proc3825152.chain_758,blat.proc3825152.chain_759	4	STRG.8318.2,STRG.8318.3	2
scaffold_4	alt_acceptor	12568167	12568168	-	asmbl_42928	none	STRG.4892.2	1	STRG.4892.1,blat.proc3825150.chain_1080	2
scaffold_8	skipped_exon	10482617	10484569	+	asmbl_53171	none	STRG.10286.2,blat.proc3825168.chain_2874	2	STRG.10286.1,blat.proc3825168.chain_2872,blat.proc3825168.chain_2873	3
scaffold_6	retained_intron	16272558	16272579	-	asmbl_49106	none	STRG.8351.1,Trinity_GG_4728_c0_g1_i1	2	STRG.8351.2	1
scaffold_21	alt_acceptor	755621	755622	+	asmbl_28303	none	STRG.23772.2	1	STRG.23772.1,Trinity_GG_30485_c0_g1_i2,blat.proc3825176.chain_986,blat.proc3825176.chain_987	4
scaffold_23	alt_acceptor	6994681	6994682	-	asmbl_31003	none	STRG.26023.1	1	STRG.26023.2,blat.proc3825160.chain_3185	2
scaffold_1	skipped_exon	9515894	9516390	-	asmbl_538	none	STRG.637.4,Trinity_GG_338_c0_g1_i2,blat.proc3825148.chain_629	3	STRG.637.1,blat.proc3825148.chain_630	2
scaffold_4	alternate_exon	10465486	10466409	+	asmbl_41664	none	STRG.4791.1,blat.proc3825166.chain_1233	2	STRG.4791.2,blat.proc3825166.chain_1232	2
scaffold_24	starts_in_intron	9078087	9078087	+	asmbl_32494,asmbl_32498	none	blat.proc3825178.chain_146,blat.proc3825178.chain_147	2	STRG.26950.1,STRG.26950.2,Trinity_GG_32214_c0_g1_i3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i6,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_148,blat.proc3825178.chain_149,blat.proc3825178.chain_150,blat.proc3825178.chain_151	10
scaffold_2	retained_intron	10373407	10373567	-	asmbl_23415,asmbl_23416,asmbl_23418	none	STRG.2210.1,STRG.2210.2,blat.proc3825148.chain_2236,blat.proc3825148.chain_2237	4	blat.proc3825148.chain_2238	1
scaffold_14	retained_exon	8216075	8216119	-	asmbl_13252,asmbl_13254	none	STRG.17234.2,blat.proc3825156.chain_2055,blat.proc3825156.chain_2060	3	STRG.17234.1,STRG.17234.3,blat.proc3825156.chain_2056,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059	5
scaffold_15	starts_in_intron	4745518	4745518	+	asmbl_15166	none	Trinity_GG_27287_c1_g1_i1,blat.proc3825172.chain_2862	2	STRG.18187.1,blat.proc3825172.chain_2861	2
scaffold_15	retained_intron	5453657	5453810	-	asmbl_14210,asmbl_14214	none	Trinity_GG_10273_c0_g1_i6,blat.proc3825156.chain_3105,blat.proc3825156.chain_3107	3	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3106	5
scaffold_22	skipped_exon	7248508	7249417	-	asmbl_29385,asmbl_29387	none	STRG.25063.2,STRG.25063.3	2	STRG.25063.1	1
scaffold_26	alt_acceptor	6350832	6350833	-	asmbl_35680,asmbl_35684	none	STRG.28335.2,STRG.28335.6,blat.proc3825162.chain_1570	3	STRG.28335.1,STRG.28335.3,STRG.28335.5	3
scaffold_21	retained_exon	256485	257452	-	asmbl_27283	none	STRG.23725.6	1	STRG.23725.4	1
scaffold_10	spliced_intron	713246	713732	-	asmbl_3986,asmbl_3987,asmbl_3988	none	STRG.11957.1,STRG.11957.2,STRG.11957.3	3	STRG.11957.4	1
scaffold_12	alt_donor	12455237	12455238	-	asmbl_8884	none	STRG.15152.1,blat.proc3825154.chain_3674	2	blat.proc3825154.chain_3675	1
scaffold_20	skipped_exon	6655139	6656436	-	asmbl_25846	none	blat.proc3825160.chain_352	1	STRG.23241.1,STRG.23241.2,blat.proc3825160.chain_350,blat.proc3825160.chain_351	4
scaffold_11	starts_in_intron	5920996	5920996	+	asmbl_5594,asmbl_5595	none	STRG.13663.2,blat.proc3825170.chain_2196	2	STRG.13663.1,blat.proc3825170.chain_2197	2
scaffold_20	alternate_exon	2762784	2765564	-	asmbl_25670,asmbl_25671	none	STRG.23018.2,STRG.23018.3	2	STRG.23018.1	1
scaffold_3	retained_intron	9517588	9517928	+	asmbl_40225,asmbl_40228,asmbl_40229	none	STRG.3436.2,Trinity_GG_19245_c0_g1_i2,blat.proc3825164.chain_3674,blat.proc3825164.chain_3677	4	blat.proc3825164.chain_3673	1
scaffold_6	retained_intron	4316646	4317616	+	asmbl_46878	none	STRG.7409.3,Trinity_GG_21371_c1_g1_i1,blat.proc3825166.chain_3616	3	STRG.7409.1,STRG.7409.2,blat.proc3825166.chain_3612,blat.proc3825166.chain_3613,blat.proc3825166.chain_3614	5
scaffold_8	spliced_intron	15733421	15733539	+	asmbl_53415,asmbl_53417	none	STRG.10577.1,blat.proc3825168.chain_3118,blat.proc3825168.chain_3120	3	Trinity_GG_23193_c0_g1_i2,blat.proc3825168.chain_3119	2
scaffold_7	starts_in_intron	13219760	13219760	+	asmbl_50327	none	Trinity_GG_22553_c0_g1_i4	1	STRG.9435.1	1
scaffold_5	retained_intron	17226444	17226936	+	asmbl_46150,asmbl_46152	none	Trinity_GG_21086_c0_g1_i8,blat.proc3825166.chain_3073,blat.proc3825166.chain_3074	3	STRG.6896.2	1
scaffold_4	starts_in_intron	12689912	12689912	-	asmbl_42950	none	blat.proc3825150.chain_1020	1	STRG.4910.1,blat.proc3825150.chain_1019	2
scaffold_20	retained_intron	8129408	8129479	+	asmbl_26745	none	STRG.23358.1,Trinity_GG_30170_c0_g1_i3,blat.proc3825176.chain_471	3	blat.proc3825176.chain_473	1
scaffold_15	starts_in_intron	13256326	13256326	-	asmbl_14623	none	blat.proc3825156.chain_3571	1	STRG.18767.1,blat.proc3825156.chain_3569,blat.proc3825156.chain_3570,blat.proc3825156.chain_3572	4
scaffold_5	ends_in_intron	6348517	6348517	+	asmbl_45426	none	blat.proc3825166.chain_2213	1	STRG.6046.1,blat.proc3825166.chain_2214	2
scaffold_8	retained_intron	11270565	11270676	-	asmbl_52141	none	STRG.10337.1,blat.proc3825152.chain_2577	2	STRG.10337.3	1
scaffold_28	alt_donor	5755532	5755533	+	asmbl_37603	none	STRG.29716.1,Trinity_GG_33774_c0_g1_i1,blat.proc3825178.chain_2881	3	STRG.29716.2,Trinity_GG_33774_c0_g1_i2,blat.proc3825178.chain_2882	3
scaffold_3	starts_in_intron	17105572	17105572	+	asmbl_40642	none	Trinity_GG_19477_c1_g1_i1,blat.proc3825166.chain_359	2	STRG.3950.1,Trinity_GG_19477_c0_g1_i1,Trinity_GG_19477_c0_g1_i3,Trinity_GG_19477_c0_g1_i4,blat.proc3825166.chain_356,blat.proc3825166.chain_358	6
scaffold_6	alt_acceptor	11464844	11464845	-	asmbl_48755	none	STRG.7938.1,blat.proc3825152.chain_343	2	blat.proc3825152.chain_342	1
scaffold_5	spliced_intron	14732294	14732395	-	asmbl_44614,asmbl_44617	none	STRG.6676.1,blat.proc3825150.chain_2844,blat.proc3825150.chain_2845	3	Trinity_GG_3740_c0_g1_i1,blat.proc3825150.chain_2846	2
scaffold_12	retained_intron	7275053	7275198	-	asmbl_8565	none	Trinity_GG_8260_c0_g1_i5,blat.proc3825154.chain_3306	2	STRG.14801.1,STRG.14801.2,Trinity_GG_8260_c0_g1_i1,Trinity_GG_8260_c0_g1_i2,Trinity_GG_8260_c0_g1_i3,blat.proc3825154.chain_3307,blat.proc3825154.chain_3308,blat.proc3825154.chain_3309	8
scaffold_3	starts_in_intron	6659145	6659145	+	asmbl_40109	none	Trinity_GG_19180_c0_g1_i4,blat.proc3825164.chain_3570	2	STRG.3295.1,STRG.3295.2,STRG.3295.3,STRG.3295.4,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3563,blat.proc3825164.chain_3564,blat.proc3825164.chain_3565,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	16
scaffold_8	ends_in_intron	9281627	9281627	+	asmbl_53065	none	blat.proc3825168.chain_2744	1	STRG.10187.1,blat.proc3825168.chain_2742	2
scaffold_14	retained_intron	1130983	1131079	-	asmbl_12863	none	Trinity_GG_9403_c0_g1_i1,blat.proc3825156.chain_1609	2	STRG.16777.1,STRG.16777.2,Trinity_GG_9403_c0_g1_i2,Trinity_GG_9403_c0_g1_i3,blat.proc3825156.chain_1608,blat.proc3825156.chain_1610	6
scaffold_10	spliced_intron	5862111	5862269	-	asmbl_4395,asmbl_4401	none	STRG.12409.2,Trinity_GG_6938_c1_g1_i3,blat.proc3825154.chain_987	3	STRG.12409.3,Trinity_GG_6938_c1_g1_i1,blat.proc3825154.chain_986	3
scaffold_7	retained_intron	12053958	12054062	+	asmbl_50207	none	blat.proc3825168.chain_1828	1	STRG.9309.2,Trinity_GG_22477_c0_g1_i4,blat.proc3825168.chain_1830	3
scaffold_2	ends_in_intron	1318932	1318932	+	asmbl_24184	none	blat.proc3825164.chain_1795	1	STRG.1595.1,STRG.1595.2,blat.proc3825164.chain_1794	3
scaffold_26	alternate_exon	9313971	9314112	+	asmbl_35222	none	STRG.28487.3	1	STRG.28487.1,STRG.28487.2,blat.proc3825178.chain_1610,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	6
scaffold_2	spliced_intron	14360465	14360586	+	asmbl_24920,asmbl_24921	none	STRG.2438.1,STRG.2438.2,blat.proc3825164.chain_2689,blat.proc3825164.chain_2691	4	blat.proc3825164.chain_2692	1
scaffold_3	retained_intron	10275684	10275967	+	asmbl_40255	none	Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3730	2	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3
scaffold_24	alt_acceptor	10603169	10603170	+	asmbl_32583	none	STRG.27028.2	1	STRG.27028.1,blat.proc3825178.chain_221,blat.proc3825178.chain_222	3
scaffold_3	ends_in_intron	16996059	16996059	+	asmbl_40636	none	blat.proc3825166.chain_417	1	STRG.3943.1,STRG.3943.2,Trinity_GG_19516_c0_g1_i3,blat.proc3825166.chain_414	4
scaffold_8	spliced_intron	7984216	7984342	-	asmbl_51939	none	STRG.10096.1,blat.proc3825152.chain_2364,blat.proc3825152.chain_2365	3	blat.proc3825152.chain_2366	1
scaffold_10	alt_acceptor	17095494	17095495	-	asmbl_5032	none	STRG.13151.1,blat.proc3825154.chain_1699	2	blat.proc3825154.chain_1700,blat.proc3825154.chain_1701	2
scaffold_6	starts_in_intron	5051172	5051172	-	asmbl_48392	none	blat.proc3825150.chain_3644	1	STRG.7486.1	1
scaffold_13	retained_intron	517905	518333	+	asmbl_10487	none	STRG.15449.1,blat.proc3825172.chain_188	2	STRG.15449.4,blat.proc3825172.chain_183	2
scaffold_17	starts_in_intron	2358091	2358091	+	asmbl_18645	none	blat.proc3825174.chain_910	1	STRG.20030.1,STRG.20030.2,STRG.20030.7,blat.proc3825174.chain_907,blat.proc3825174.chain_909	5
scaffold_2	ends_in_intron	16058911	16058911	+	asmbl_25096	none	blat.proc3825164.chain_2790	1	STRG.2546.1,blat.proc3825164.chain_2789	2
scaffold_21	spliced_intron	5537163	5537307	-	asmbl_27676	none	STRG.24086.1	1	STRG.24086.2,blat.proc3825160.chain_1271,blat.proc3825160.chain_1275,blat.proc3825160.chain_1277	4
scaffold_2	starts_in_intron	861460	861460	+	asmbl_24115,asmbl_24116	none	STRG.1562.3,blat.proc3825164.chain_1703	2	STRG.1562.1,STRG.1562.2,blat.proc3825164.chain_1700	3
scaffold_14	spliced_intron	5597398	5598031	+	asmbl_12028,asmbl_12029,asmbl_12030,asmbl_12031	none	STRG.17042.1,STRG.17042.2,blat.proc3825172.chain_1824,blat.proc3825172.chain_1828	4	blat.proc3825172.chain_1830	1
scaffold_21	alt_donor	7493557	7493558	+	asmbl_28741	none	STRG.24280.1	1	blat.proc3825176.chain_1495	1
scaffold_14	alt_acceptor	11247863	11247864	-	asmbl_13461,asmbl_13465	none	STRG.17460.1,blat.proc3825156.chain_2266,blat.proc3825156.chain_2267	3	STRG.17460.3,STRG.17460.4	2
scaffold_8	starts_in_intron	4961478	4961478	-	asmbl_51822	none	blat.proc3825152.chain_2199	1	STRG.9966.1,blat.proc3825152.chain_2197,blat.proc3825152.chain_2198	3
scaffold_12	starts_in_intron	5329536	5329536	+	asmbl_7649	none	blat.proc3825170.chain_3226	1	STRG.14694.1,Trinity_GG_25421_c0_g1_i1,blat.proc3825170.chain_3227	3
scaffold_21	ends_in_intron	9732363	9732363	-	asmbl_27968	none	Trinity_GG_13653_c2_g1_i1,blat.proc3825160.chain_1630	2	STRG.24437.1,blat.proc3825160.chain_1628	2
scaffold_21	retained_exon	4100643	4101488	+	asmbl_28502	none	STRG.24000.4	1	STRG.24000.1	1
scaffold_3	alt_acceptor	14668612	14668613	+	asmbl_40542,asmbl_40543	none	STRG.3810.1,STRG.3810.3,Trinity_GG_19449_c0_g1_i3,blat.proc3825166.chain_300	4	STRG.3810.2,Trinity_GG_19449_c0_g1_i1,blat.proc3825166.chain_299	3
scaffold_1	alt_acceptor	11174135	11174136	+	asmbl_2080	none	STRG.747.2,blat.proc3825164.chain_911	2	STRG.747.3,blat.proc3825164.chain_914	2
scaffold_25	ends_in_intron	9091647	9091647	+	asmbl_33781	none	STRG.27722.2	1	STRG.27722.1,blat.proc3825178.chain_834,blat.proc3825178.chain_835	3
scaffold_13	skipped_exon	11598971	11600009	+	asmbl_11289,asmbl_11292,asmbl_11293,asmbl_11296,asmbl_11297,asmbl_11298	none	STRG.16316.1,STRG.16316.3,blat.proc3825172.chain_1028,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034	6	blat.proc3825172.chain_1029,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	3
scaffold_3	alt_acceptor	17844146	17844147	+	asmbl_40704,asmbl_40705,asmbl_40706	none	STRG.4004.1,STRG.4004.2,blat.proc3825166.chain_495,blat.proc3825166.chain_496,blat.proc3825166.chain_497	5	STRG.4004.3,STRG.4004.4	2
scaffold_13	alt_donor	7653878	7653879	+	asmbl_11065	none	STRG.16054.2	1	STRG.16054.1,blat.proc3825172.chain_821,blat.proc3825172.chain_824	3
scaffold_23	alternate_exon	7406584	7410459	+	asmbl_31694	none	STRG.26061.1,Trinity_GG_31707_c0_g1_i1	2	STRG.26061.2	1
scaffold_7	alt_donor	6878255	6878256	+	asmbl_49873	none	STRG.8947.1	1	STRG.8947.2	1
scaffold_26	spliced_intron	5045661	5045778	+	asmbl_34937,asmbl_34943,asmbl_34947,asmbl_34949,asmbl_34950,asmbl_34951,asmbl_34952,asmbl_34955	none	STRG.28240.1,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1170,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179	9	blat.proc3825178.chain_1174	1
scaffold_28	alternate_exon	1565542	1566078	+	asmbl_37309	none	STRG.29340.2	1	STRG.29340.1,Trinity_GG_33559_c0_g1_i1	2
scaffold_4	alt_acceptor	5883150	5883151	-	asmbl_42642	none	STRG.4480.1,blat.proc3825150.chain_729	2	STRG.4480.2,blat.proc3825150.chain_728,blat.proc3825150.chain_730	3
scaffold_14	starts_in_intron	15473890	15473890	+	asmbl_12605	none	Trinity_GG_27077_c0_g1_i2,blat.proc3825172.chain_2487	2	STRG.17778.1,blat.proc3825172.chain_2488	2
scaffold_8	retained_intron	6036917	6037004	+	asmbl_52933,asmbl_52934	none	Trinity_GG_22892_c0_g1_i3,Trinity_GG_22892_c0_g1_i4,blat.proc3825168.chain_2585,blat.proc3825168.chain_2587	4	STRG.10010.1,Trinity_GG_22892_c0_g1_i1,blat.proc3825168.chain_2586	3
scaffold_4	skipped_exon	7151104	7152429	+	asmbl_41467	none	STRG.4559.3	1	STRG.4559.1,STRG.4559.4,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	4
scaffold_16	starts_in_intron	3570525	3570525	-	asmbl_16989	none	Trinity_GG_10767_c0_g1_i4,blat.proc3825158.chain_304	2	STRG.19175.1,STRG.19175.2,STRG.19175.3,Trinity_GG_10767_c0_g1_i5,Trinity_GG_10767_c0_g1_i8,blat.proc3825158.chain_305,blat.proc3825158.chain_306	7
scaffold_10	alt_acceptor	5812246	5812247	+	asmbl_3205,asmbl_3206	none	STRG.12403.3,blat.proc3825170.chain_1096	2	STRG.12403.1,STRG.12403.2,blat.proc3825170.chain_1095,blat.proc3825170.chain_1097	4
scaffold_5	alt_acceptor	71207	71208	+	asmbl_45068	none	STRG.5571.2	1	STRG.5571.1	1
scaffold_7	alternate_exon	2485193	2485244	+	asmbl_49648	none	blat.proc3825168.chain_1195	1	STRG.8684.2,blat.proc3825168.chain_1193,blat.proc3825168.chain_1196	3
scaffold_28	alt_donor	2465285	2465286	+	asmbl_37372	none	STRG.29424.2	1	STRG.29424.1,blat.proc3825178.chain_2603,blat.proc3825178.chain_2604	3
scaffold_4	alt_acceptor	4173435	4173436	-	asmbl_42505	none	STRG.4334.2	1	STRG.4334.1,blat.proc3825150.chain_578	2
scaffold_13	retained_intron	534832	534931	-	asmbl_9361	none	Trinity_GG_8674_c0_g1_i6,blat.proc3825156.chain_328	2	STRG.15447.2,STRG.15447.3,Trinity_GG_8674_c0_g1_i3,blat.proc3825156.chain_325	4
scaffold_7	spliced_intron	5927823	5928006	+	asmbl_49830	none	STRG.8902.4,blat.proc3825168.chain_1372	2	Trinity_GG_22209_c0_g1_i2,blat.proc3825168.chain_1374	2
scaffold_19	alternate_exon	2194715	2197150	-	asmbl_22050	none	STRG.21933.1,blat.proc3825158.chain_2773	2	STRG.21933.2	1
scaffold_3	retained_intron	12465871	12466558	-	asmbl_39215	none	STRG.3642.1,blat.proc3825148.chain_3478	2	STRG.3642.2,Trinity_GG_1964_c0_g1_i1,blat.proc3825148.chain_3479	3
scaffold_2	alt_acceptor	16403584	16403585	+	asmbl_25139	none	blat.proc3825164.chain_2873	1	blat.proc3825164.chain_2870	1
scaffold_18	alt_donor	13805466	13805467	+	asmbl_21037	none	Trinity_GG_29370_c0_g1_i2,blat.proc3825174.chain_2836	2	STRG.21822.1,Trinity_GG_29370_c0_g1_i1,Trinity_GG_29370_c0_g1_i3,blat.proc3825174.chain_2835,blat.proc3825174.chain_2837,blat.proc3825174.chain_2838,blat.proc3825174.chain_2839	7
scaffold_1	alternate_exon	5186758	5186887	-	asmbl_237	none	STRG.324.2,Trinity_GG_166_c0_g1_i3,blat.proc3825148.chain_286	3	STRG.324.1,Trinity_GG_166_c0_g1_i2,blat.proc3825148.chain_285	3
scaffold_6	ends_in_intron	2865010	2865010	+	asmbl_46777	none	blat.proc3825166.chain_3484	1	STRG.7284.1,STRG.7284.2,Trinity_GG_21320_c0_g1_i2,blat.proc3825166.chain_3483	4
scaffold_8	retained_intron	6018602	6018729	-	asmbl_51858	none	Trinity_GG_5580_c0_g1_i3,blat.proc3825152.chain_2267	2	STRG.10012.2,Trinity_GG_5580_c0_g1_i1,blat.proc3825152.chain_2268	3
scaffold_3	retained_exon	10628698	10629296	+	asmbl_40286,asmbl_40290	none	STRG.3513.2,STRG.3513.5,blat.proc3825164.chain_3687	3	STRG.3513.1,STRG.3513.7,blat.proc3825164.chain_3684	3
scaffold_22	alt_acceptor	2404538	2404539	+	asmbl_29938,asmbl_29939	none	STRG.24781.1,STRG.24781.2,blat.proc3825176.chain_1868	3	blat.proc3825176.chain_1869	1
scaffold_16	starts_in_intron	8100916	8100916	-	asmbl_17233	none	blat.proc3825158.chain_605	1	STRG.19455.1,blat.proc3825158.chain_604,blat.proc3825158.chain_606	3
scaffold_20	starts_in_intron	11118175	11118175	-	asmbl_26140	none	blat.proc3825160.chain_741	1	STRG.23627.1,blat.proc3825160.chain_740	2
scaffold_17	retained_exon	9971884	9972036	+	asmbl_19143	none	STRG.20615.3	1	blat.proc3825174.chain_1488	1
scaffold_5	retained_intron	16321133	16321283	+	asmbl_46084	none	blat.proc3825166.chain_3012	1	STRG.6829.1,blat.proc3825166.chain_3010	2
scaffold_18	skipped_exon	13113219	13113865	+	asmbl_20992,asmbl_20995	none	STRG.21750.2,blat.proc3825174.chain_2741,blat.proc3825174.chain_2743	3	STRG.21750.1,STRG.21750.3,blat.proc3825174.chain_2742	3
scaffold_3	starts_in_intron	2961488	2961488	-	asmbl_38747	none	blat.proc3825148.chain_2917	1	STRG.3052.1,STRG.3052.2,blat.proc3825148.chain_2916,blat.proc3825148.chain_2918	4
scaffold_18	spliced_intron	7867713	7867862	+	asmbl_20801,asmbl_20802,asmbl_20808	none	STRG.21488.3,STRG.21488.5,Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i3,blat.proc3825174.chain_2450,blat.proc3825174.chain_2455	6	STRG.21488.4,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i11,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2453	7
scaffold_701	alt_donor	4717	4718	-	asmbl_51604	none	STRG.30441.1,blat.proc3825162.chain_3537	2	STRG.30441.2,blat.proc3825162.chain_3538	2
scaffold_4	starts_in_intron	19275443	19275443	-	asmbl_43417,asmbl_43418,asmbl_43420	none	blat.proc3825150.chain_1704,blat.proc3825150.chain_1705,blat.proc3825150.chain_1706	3	STRG.5511.1,blat.proc3825150.chain_1707	2
scaffold_28	starts_in_intron	5232900	5232900	-	asmbl_38265	none	Trinity_GG_16598_c0_g1_i11,blat.proc3825162.chain_2783	2	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2780,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	6
scaffold_9	retained_exon	16689720	16689740	-	asmbl_55613	none	STRG.11816.1,blat.proc3825154.chain_262	2	blat.proc3825154.chain_263	1
scaffold_18	spliced_intron	370096	370294	-	asmbl_19575,asmbl_19581,asmbl_19582,asmbl_19584	none	STRG.20990.1,blat.proc3825158.chain_1985,blat.proc3825158.chain_1986,blat.proc3825158.chain_1988,blat.proc3825158.chain_1990	5	blat.proc3825158.chain_1989	1
scaffold_5	starts_in_intron	11554350	11554350	+	asmbl_45749	none	Trinity_GG_20799_c0_g1_i2,blat.proc3825166.chain_2611	2	STRG.6417.1,blat.proc3825166.chain_2610	2
scaffold_10	alt_donor	15426764	15426765	+	asmbl_3686	none	STRG.13064.2	1	STRG.13064.1,STRG.13064.3	2
scaffold_340	retained_intron	2802	2919	+	asmbl_41010	none	STRG.30295.4,Trinity_GG_34083_c0_g1_i8,blat.proc3825178.chain_3395	3	STRG.30295.1	1
scaffold_1	alt_donor	5199323	5199324	-	asmbl_241	none	STRG.326.1,blat.proc3825148.chain_306	2	STRG.326.2	1
scaffold_12	spliced_intron	12288575	12288996	-	asmbl_8859	none	STRG.15130.1	1	STRG.15130.2,STRG.15130.3,STRG.15130.4,STRG.15130.5	4
scaffold_11	retained_intron	16649266	16649558	+	asmbl_6166	none	STRG.14355.2,Trinity_GG_25217_c0_g1_i2,blat.proc3825170.chain_2886	3	STRG.14355.1,blat.proc3825170.chain_2887	2
scaffold_10	retained_intron	13300842	13301043	+	asmbl_3593	none	blat.proc3825170.chain_1459	1	STRG.12924.1,blat.proc3825170.chain_1458,blat.proc3825170.chain_1460	3
scaffold_15	starts_in_intron	4155424	4155424	-	asmbl_14136	none	Trinity_GG_10219_c0_g1_i3,blat.proc3825156.chain_3010	2	STRG.18162.1,Trinity_GG_10219_c0_g1_i2,Trinity_GG_10219_c0_g1_i4,blat.proc3825156.chain_3009,blat.proc3825156.chain_3011	5
scaffold_4	alt_acceptor	14024300	14024301	-	asmbl_43030	none	STRG.5022.2	1	STRG.5022.1,blat.proc3825150.chain_1158	2
scaffold_4	ends_in_intron	4414536	4414536	+	asmbl_41262	none	blat.proc3825166.chain_841	1	STRG.4349.1,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_851,blat.proc3825166.chain_853	5
scaffold_7	alt_donor	8860412	8860413	+	asmbl_50067	none	STRG.9128.1,blat.proc3825168.chain_1598	2	STRG.9128.2	1
scaffold_10	spliced_intron	3928652	3928785	-	asmbl_4240	none	STRG.12235.4,blat.proc3825154.chain_798	2	STRG.12235.3	1
scaffold_16	alternate_exon	1881523	1881598	+	asmbl_16107	none	Trinity_GG_27792_c0_g1_i1,blat.proc3825174.chain_31	2	STRG.19108.1,STRG.19108.2,Trinity_GG_27792_c0_g1_i3,blat.proc3825174.chain_29	4
scaffold_5	alt_acceptor	3102925	3102926	+	asmbl_45210	none	STRG.5807.1,blat.proc3825166.chain_2050	2	STRG.5807.2,blat.proc3825166.chain_2051	2
scaffold_9	retained_intron	17548809	17549033	-	asmbl_55655	none	STRG.11842.1,Trinity_GG_6526_c0_g1_i1,blat.proc3825154.chain_286	3	STRG.11842.2	1
scaffold_23	starts_in_intron	6688940	6688940	+	asmbl_31645	none	Trinity_GG_31651_c1_g1_i5,Trinity_GG_31651_c1_g1_i7,blat.proc3825176.chain_2934,blat.proc3825176.chain_2936	4	blat.proc3825176.chain_2935	1
scaffold_94	alt_acceptor	8242	8243	-	asmbl_55837	none	STRG.30135.1,blat.proc3825162.chain_3306	2	STRG.30135.2	1
scaffold_1	spliced_intron	14182552	14182705	+	asmbl_2335,asmbl_2337	none	STRG.1002.1,blat.proc3825164.chain_1174,blat.proc3825164.chain_1175	3	blat.proc3825164.chain_1173	1
scaffold_11	spliced_intron	9680424	9680534	-	asmbl_6947	none	STRG.13985.1,blat.proc3825154.chain_2481	2	STRG.13985.2,blat.proc3825154.chain_2480	2
scaffold_14	alt_acceptor	733742	733743	-	asmbl_12847	none	STRG.16745.2	1	STRG.16745.1,blat.proc3825156.chain_1579	2
scaffold_1	starts_in_intron	4571471	4571471	-	asmbl_198,asmbl_201,asmbl_202	none	STRG.285.2,blat.proc3825148.chain_158	2	STRG.285.1,blat.proc3825148.chain_159,blat.proc3825148.chain_160	3
scaffold_15	retained_intron	13325170	13325463	+	asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15635,asmbl_15636,asmbl_15637	none	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	8	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3389	6
scaffold_18	alt_acceptor	1391553	1391554	-	asmbl_19616	none	STRG.21025.2,blat.proc3825158.chain_2005	2	STRG.21025.1,STRG.21025.3,blat.proc3825158.chain_2006	3
scaffold_1	retained_intron	170665	170776	+	asmbl_1405	none	Trinity_GG_17335_c0_g2_i2,blat.proc3825164.chain_112	2	STRG.15.1,Trinity_GG_17335_c0_g2_i1,blat.proc3825164.chain_113	3
scaffold_5	retained_exon	3772855	3773188	+	asmbl_45236	none	STRG.5842.2,blat.proc3825166.chain_2078	2	STRG.5842.1	1
scaffold_20	spliced_intron	1107445	1107556	-	asmbl_25535	none	blat.proc3825158.chain_3675	1	blat.proc3825158.chain_3677	1
scaffold_26	alt_acceptor	9330589	9330590	-	asmbl_35775	none	STRG.28499.1,blat.proc3825162.chain_1643	2	STRG.28499.2	1
scaffold_16	starts_in_intron	5949778	5949778	+	asmbl_16244	none	Trinity_GG_27858_c0_g1_i3,blat.proc3825174.chain_165	2	STRG.19329.1,STRG.19329.2,Trinity_GG_27858_c0_g1_i2,blat.proc3825174.chain_164,blat.proc3825174.chain_166	5
scaffold_10	retained_exon	6673015	6673106	-	asmbl_4489	none	blat.proc3825154.chain_1067	1	blat.proc3825154.chain_1063,blat.proc3825154.chain_1064	2
scaffold_8	retained_intron	16396748	16397082	-	asmbl_52389	none	Trinity_GG_5893_c0_g1_i6,blat.proc3825152.chain_2850	2	STRG.10626.1,STRG.10626.2,STRG.10626.3,STRG.10626.4,blat.proc3825152.chain_2845,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2849,blat.proc3825152.chain_2851,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	11
scaffold_15	alt_donor	6783940	6783941	-	asmbl_14253	none	STRG.18297.1,blat.proc3825156.chain_3128	2	blat.proc3825156.chain_3127	1
scaffold_2	ends_in_intron	2881502	2881502	-	asmbl_22937	none	blat.proc3825148.chain_1666	1	STRG.1736.3,blat.proc3825148.chain_1668,blat.proc3825148.chain_1670,blat.proc3825148.chain_1673,blat.proc3825148.chain_1674	5
scaffold_27	alt_donor	6258368	6258369	+	asmbl_36394	none	STRG.29016.2,blat.proc3825178.chain_2194	2	STRG.29016.3,blat.proc3825178.chain_2191,blat.proc3825178.chain_2193	3
scaffold_19	starts_in_intron	13024483	13024483	-	asmbl_22591	none	blat.proc3825158.chain_3481	1	STRG.22625.1,STRG.22625.2,STRG.22625.3,blat.proc3825158.chain_3479,blat.proc3825158.chain_3480	5
scaffold_14	alt_donor	2887918	2887919	-	asmbl_12981	none	STRG.16887.2,blat.proc3825156.chain_1635	2	STRG.16887.4,blat.proc3825156.chain_1633	2
scaffold_1	alt_acceptor	12509537	12509538	-	asmbl_728	none	STRG.866.1,blat.proc3825148.chain_821	2	STRG.866.2	1
scaffold_11	spliced_intron	13462735	13462822	-	asmbl_7129,asmbl_7131	none	STRG.14207.2,STRG.14207.3,Trinity_GG_7945_c0_g1_i1,Trinity_GG_7945_c0_g1_i5,blat.proc3825154.chain_2747,blat.proc3825154.chain_2748	6	STRG.14207.1,Trinity_GG_7945_c0_g1_i4,blat.proc3825154.chain_2749	3
scaffold_22	alternate_exon	6947403	6947437	+	asmbl_30140	none	STRG.25013.3	1	STRG.25013.1,Trinity_GG_31151_c0_g1_i1,blat.proc3825176.chain_2141	3
scaffold_3	alternate_exon	12041685	12041899	-	asmbl_39200,asmbl_39202	none	STRG.3626.2,STRG.3626.3,blat.proc3825148.chain_3500	3	STRG.3626.1,Trinity_GG_1980_c0_g1_i2,blat.proc3825148.chain_3499,blat.proc3825148.chain_3501	4
scaffold_2	alt_acceptor	14198792	14198793	-	asmbl_23573,asmbl_23576	none	STRG.2414.1,STRG.2414.3,blat.proc3825148.chain_2407	3	STRG.2414.4,blat.proc3825148.chain_2405	2
scaffold_4	skipped_exon	10855073	10857971	+	asmbl_41676	none	STRG.4807.1	1	STRG.4807.2,blat.proc3825166.chain_1275	2
scaffold_9	spliced_intron	5283686	5284698	+	asmbl_54025	none	STRG.11112.3	1	STRG.11112.1,STRG.11112.2,blat.proc3825168.chain_3569,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6
scaffold_7	alt_donor	130122	130123	-	asmbl_50664	none	STRG.8595.2	1	STRG.8595.5,STRG.8595.7	2
scaffold_15	starts_in_intron	12533059	12533059	-	asmbl_14583	none	STRG.18709.1,blat.proc3825156.chain_3555	2	STRG.18709.2,STRG.18709.3,blat.proc3825156.chain_3556,blat.proc3825156.chain_3557	4
scaffold_20	retained_intron	11600743	11600915	-	asmbl_26169	none	STRG.23678.1	1	STRG.23678.2	1
scaffold_10	retained_exon	17325631	17325749	-	asmbl_5053	none	STRG.13182.2,blat.proc3825154.chain_1776	2	STRG.13182.1,blat.proc3825154.chain_1775	2
scaffold_17	alternate_exon	13953884	13953976	-	asmbl_18388	none	STRG.20870.1	1	STRG.20870.3	1
scaffold_23	spliced_intron	4950206	4950422	+	asmbl_31540	none	Trinity_GG_31594_c0_g1_i1,blat.proc3825176.chain_2824	2	Trinity_GG_31594_c0_g1_i5,blat.proc3825176.chain_2823	2
scaffold_12	alt_acceptor	11383583	11383584	-	asmbl_8813	none	STRG.15076.2	1	STRG.15076.1	1
scaffold_9	ends_in_intron	12778055	12778055	-	asmbl_55405	none	blat.proc3825154.chain_53	1	STRG.11595.1,blat.proc3825154.chain_54	2
scaffold_13	alternate_exon	7506711	7507451	-	asmbl_9892	none	blat.proc3825156.chain_904	1	STRG.16047.2,STRG.16047.4,blat.proc3825156.chain_901,blat.proc3825156.chain_902,blat.proc3825156.chain_908	5
scaffold_27	retained_intron	7277981	7278212	+	asmbl_36445	none	STRG.29091.1,Trinity_GG_33354_c0_g1_i1,blat.proc3825178.chain_2188	3	STRG.29091.2	1
scaffold_16	retained_intron	13922163	13922274	+	asmbl_16665	none	Trinity_GG_28155_c0_g1_i2,blat.proc3825174.chain_686	2	STRG.19788.1,blat.proc3825174.chain_687	2
scaffold_13	spliced_intron	15244277	15244789	-	asmbl_10233	none	STRG.16569.1,blat.proc3825156.chain_1346,blat.proc3825156.chain_1397	3	blat.proc3825156.chain_1345	1
scaffold_19	starts_in_intron	11076164	11076164	+	asmbl_21666	none	Trinity_GG_29694_c0_g1_i1,blat.proc3825174.chain_3404	2	STRG.22439.1	1
scaffold_14	retained_exon	1590521	1590858	-	asmbl_12899	none	STRG.16799.4	1	STRG.16799.1,STRG.16799.2,STRG.16799.3,blat.proc3825156.chain_1564,blat.proc3825156.chain_1565,blat.proc3825156.chain_1566	6
scaffold_25	alternate_exon	9429027	9429085	+	asmbl_33815	none	STRG.27757.2	1	STRG.27757.3	1
scaffold_26	retained_intron	5483268	5483396	+	asmbl_34993	none	Trinity_GG_32931_c0_g1_i7,blat.proc3825178.chain_1352	2	STRG.28252.1,STRG.28252.2,STRG.28252.3,STRG.28252.4,Trinity_GG_32931_c0_g1_i1	5
scaffold_27	skipped_exon	2815397	2816799	+	asmbl_36118,asmbl_36122,asmbl_36123	none	STRG.28763.1,STRG.28763.3,blat.proc3825178.chain_1922,blat.proc3825178.chain_1925	4	STRG.28763.2,STRG.28763.4,blat.proc3825178.chain_1923	3
scaffold_8	starts_in_intron	16546516	16546516	-	asmbl_52426	none	blat.proc3825152.chain_2896	1	STRG.10633.1,STRG.10633.2,blat.proc3825152.chain_2895,blat.proc3825152.chain_2897	4
scaffold_2	ends_in_intron	6913131	6913131	+	asmbl_24518	none	Trinity_GG_18469_c1_g1_i1,blat.proc3825164.chain_2198	2	STRG.2040.1,blat.proc3825164.chain_2197	2
scaffold_10	retained_intron	12946554	12946681	+	asmbl_3561	none	Trinity_GG_24424_c0_g1_i2,blat.proc3825170.chain_1516	2	STRG.12888.1,Trinity_GG_24424_c0_g1_i1,blat.proc3825170.chain_1517	3
scaffold_15	spliced_intron	11304106	11304275	+	asmbl_15491,asmbl_15494,asmbl_15495,asmbl_15496	none	STRG.18603.1,blat.proc3825172.chain_3162,blat.proc3825172.chain_3163,blat.proc3825172.chain_3165,blat.proc3825172.chain_3166	5	Trinity_GG_27459_c0_g1_i3,blat.proc3825172.chain_3167	2
scaffold_16	retained_exon	325601	325669	-	asmbl_16855,asmbl_16856,asmbl_16858,asmbl_16859	none	STRG.19029.1,blat.proc3825158.chain_167,blat.proc3825158.chain_169,blat.proc3825158.chain_170,blat.proc3825158.chain_172	5	STRG.19029.2,blat.proc3825158.chain_168,blat.proc3825158.chain_171	3
scaffold_4	alt_acceptor	17538304	17538305	+	asmbl_42054	none	STRG.5340.1	1	STRG.5340.2	1
scaffold_2	alt_donor	6534324	6534325	+	asmbl_24480	none	STRG.2015.1,Trinity_GG_18445_c0_g1_i3,blat.proc3825164.chain_2136	3	STRG.2015.2,Trinity_GG_18445_c0_g1_i2,blat.proc3825164.chain_2135	3
scaffold_13	alternate_exon	14180164	14180246	-	asmbl_10175	none	STRG.16459.2,blat.proc3825156.chain_1255	2	STRG.16459.1,blat.proc3825156.chain_1256	2
scaffold_19	alt_donor	3682823	3682824	+	asmbl_21334	none	STRG.22058.3	1	STRG.22058.1,STRG.22058.2	2
scaffold_11	ends_in_intron	10322735	10322735	+	asmbl_5935	none	blat.proc3825170.chain_2585	1	STRG.14041.1,blat.proc3825170.chain_2586	2
scaffold_2	retained_exon	17614275	17615047	+	asmbl_25185	none	STRG.2653.1,Trinity_GG_18824_c1_g1_i1,blat.proc3825164.chain_2942,blat.proc3825164.chain_2945	4	STRG.2653.3	1
scaffold_14	starts_in_intron	9999654	9999654	-	asmbl_13401	none	Trinity_GG_9740_c1_g1_i1,blat.proc3825156.chain_2188	2	STRG.17372.2	1
scaffold_18	alternate_exon	1921615	1921715	+	asmbl_20392	none	STRG.21085.1,blat.proc3825174.chain_2003	2	STRG.21085.2,blat.proc3825174.chain_2002	2
scaffold_14	starts_in_intron	9271991	9271991	-	asmbl_13369	none	blat.proc3825156.chain_2206	1	STRG.17338.1,STRG.17338.2,STRG.17338.3,STRG.17338.4,STRG.17338.5,blat.proc3825156.chain_2207	6
scaffold_2	alt_acceptor	10376040	10376041	-	asmbl_23418	none	STRG.2210.2	1	STRG.2210.1,blat.proc3825148.chain_2236,blat.proc3825148.chain_2238	3
scaffold_20	retained_intron	11671056	11671178	+	asmbl_27086	none	Trinity_GG_30422_c0_g1_i3,blat.proc3825176.chain_884	2	Trinity_GG_30422_c0_g1_i5,blat.proc3825176.chain_883	2
scaffold_5	alternate_exon	6564689	6567768	+	asmbl_45439	none	STRG.6054.2	1	blat.proc3825166.chain_2218	1
scaffold_1	starts_in_intron	5963964	5963964	+	asmbl_1809	none	Trinity_GG_17575_c0_g1_i3,blat.proc3825164.chain_541	2	STRG.400.1,STRG.400.2,blat.proc3825164.chain_540	3
scaffold_6	retained_intron	2487326	2487373	+	asmbl_46755,asmbl_46756,asmbl_46758,asmbl_46759	none	STRG.7248.1,STRG.7248.4,STRG.7248.5,STRG.7248.6	4	blat.proc3825166.chain_3496,blat.proc3825166.chain_3498,blat.proc3825166.chain_3499	3
scaffold_5	retained_exon	16018236	16018358	-	asmbl_44740	none	STRG.6788.1,blat.proc3825150.chain_2866	2	blat.proc3825150.chain_2865	1
scaffold_20	retained_exon	11482107	11482530	+	asmbl_27052	none	Trinity_GG_30405_c0_g1_i1,blat.proc3825176.chain_845	2	STRG.23653.4	1
scaffold_7	alt_acceptor	18392948	18392949	-	asmbl_51467,asmbl_51469,asmbl_51477	none	STRG.9670.4,STRG.9670.7,Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2017,blat.proc3825152.chain_2018,blat.proc3825152.chain_2021	7	STRG.9670.1,STRG.9670.2,STRG.9670.3,STRG.9670.5,STRG.9670.6,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2014,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016,blat.proc3825152.chain_2020	14
scaffold_13	skipped_exon	11615251	11616123	+	asmbl_11302	none	STRG.16308.2,blat.proc3825172.chain_1102	2	STRG.16308.1,blat.proc3825172.chain_1103	2
scaffold_13	retained_intron	16437382	16437484	+	asmbl_11579	none	Trinity_GG_26477_c0_g1_i1,blat.proc3825172.chain_1424	2	blat.proc3825172.chain_1427	1
scaffold_4	alt_donor	3279657	3279658	+	asmbl_41170	none	Trinity_GG_19627_c0_g1_i2,blat.proc3825166.chain_611	2	STRG.4256.1,Trinity_GG_19627_c0_g1_i3,blat.proc3825166.chain_610	3
scaffold_10	retained_intron	11601926	11602115	+	asmbl_3480	none	blat.proc3825170.chain_1424	1	STRG.12815.1,STRG.12815.2,STRG.12815.3,STRG.12815.4,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1429	7
scaffold_25	retained_exon	9939830	9939881	-	asmbl_34530	none	STRG.27806.2	1	STRG.27806.1	1
scaffold_12	skipped_exon	7542468	7542849	-	asmbl_8597,asmbl_8598	none	STRG.14835.3,blat.proc3825154.chain_3374	2	STRG.14835.1,STRG.14835.2,blat.proc3825154.chain_3373,blat.proc3825154.chain_3375	4
scaffold_17	retained_intron	14037114	14037195	-	asmbl_18400,asmbl_18401	none	STRG.20881.1,STRG.20881.3	2	STRG.20881.2	1
scaffold_9	alt_acceptor	8396291	8396292	+	asmbl_54168	none	blat.proc3825170.chain_59	1	STRG.11261.1,STRG.11261.2,STRG.11261.3,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_62	6
scaffold_1	spliced_intron	5743594	5743804	+	asmbl_1784	none	STRG.374.1,Trinity_GG_17562_c0_g1_i2,blat.proc3825164.chain_512	3	STRG.374.2,Trinity_GG_17562_c0_g1_i1,blat.proc3825164.chain_511	3
scaffold_7	alternate_exon	4501324	4501706	-	asmbl_50864,asmbl_50865	none	STRG.8821.1,Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1303	3	blat.proc3825152.chain_1301	1
scaffold_7	alternate_exon	1227342	1231431	+	asmbl_49600,asmbl_49607	none	Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	3	Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c4_g1_i1,blat.proc3825168.chain_1079,blat.proc3825168.chain_1084	4
scaffold_12	alt_acceptor	4205331	4205332	+	asmbl_7588	none	STRG.14600.3	1	STRG.14600.2,Trinity_GG_25384_c0_g1_i1,blat.proc3825170.chain_3173	3
scaffold_322	alt_acceptor	5793	5794	-	asmbl_40970	none	STRG.30280.2	1	STRG.30280.1	1
scaffold_23	alt_acceptor	1996772	1996773	-	asmbl_30681	none	STRG.25671.2	1	STRG.25671.1,blat.proc3825160.chain_2806	2
scaffold_6	alt_acceptor	13176630	13176631	+	asmbl_47481	none	STRG.8075.2,blat.proc3825168.chain_556	2	STRG.8075.1,STRG.8075.3,blat.proc3825168.chain_555,blat.proc3825168.chain_557	4
scaffold_11	alternate_exon	210083	210274	-	asmbl_6381	none	STRG.13254.2	1	STRG.13254.1	1
scaffold_23	starts_in_intron	6020318	6020318	-	asmbl_30966	none	blat.proc3825160.chain_3109	1	STRG.25968.1,blat.proc3825160.chain_3110	2
scaffold_26	alt_acceptor	9843384	9843385	+	asmbl_35279,asmbl_35289	none	STRG.28546.2,STRG.28546.3,blat.proc3825178.chain_1580	3	STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1575,blat.proc3825178.chain_1576,blat.proc3825178.chain_1578,blat.proc3825178.chain_1581	7
scaffold_17	spliced_intron	8880820	8880901	+	asmbl_19040	none	STRG.20508.1,blat.proc3825174.chain_1359	2	Trinity_GG_28545_c0_g1_i3,blat.proc3825174.chain_1360	2
scaffold_24	starts_in_intron	1435993	1435993	-	asmbl_32733	none	STRG.26397.2	1	STRG.26397.1,blat.proc3825160.chain_3481	2
scaffold_15	spliced_intron	12390490	12391005	-	asmbl_14571,asmbl_14572	none	STRG.18695.1,STRG.18695.3,blat.proc3825156.chain_3520	3	Trinity_GG_10480_c0_g1_i11,blat.proc3825156.chain_3513	2
scaffold_11	starts_in_intron	5867612	5867612	-	asmbl_6687	none	blat.proc3825154.chain_2235	1	STRG.13653.2,STRG.13653.3,blat.proc3825154.chain_2233,blat.proc3825154.chain_2236	4
scaffold_25	alt_donor	5568187	5568188	-	asmbl_34262	none	STRG.27457.2,Trinity_GG_15395_c0_g1_i1,blat.proc3825162.chain_819	3	STRG.27457.1,Trinity_GG_15395_c0_g1_i2,blat.proc3825162.chain_820	3
scaffold_1	alt_acceptor	12334369	12334370	-	asmbl_711,asmbl_712,asmbl_713	none	blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839	3	STRG.849.2,blat.proc3825148.chain_831	2
scaffold_2	alt_donor	7894037	7894038	+	asmbl_24596,asmbl_24597	none	STRG.2085.3,blat.proc3825164.chain_2201,blat.proc3825164.chain_2205	3	STRG.2085.1,STRG.2085.2,blat.proc3825164.chain_2202,blat.proc3825164.chain_2203,blat.proc3825164.chain_2206,blat.proc3825164.chain_2208,blat.proc3825164.chain_2210,blat.proc3825164.chain_2211	8
scaffold_8	skipped_exon	9128689	9129575	-	asmbl_52007,asmbl_52010	none	STRG.10172.3,STRG.10172.4	2	STRG.10172.1,STRG.10172.2,blat.proc3825152.chain_2387,blat.proc3825152.chain_2389	4
scaffold_14	ends_in_intron	1474145	1474145	-	asmbl_12888	none	Trinity_GG_9370_c1_g1_i1,blat.proc3825156.chain_1561	2	STRG.16795.1,blat.proc3825156.chain_1560	2
scaffold_4	alternate_exon	16802590	16802674	-	asmbl_43216	none	Trinity_GG_2936_c0_g1_i1,blat.proc3825150.chain_1429	2	blat.proc3825150.chain_1430	1
scaffold_6	spliced_intron	8460449	8460563	+	asmbl_47127,asmbl_47128,asmbl_47129	none	STRG.7725.2,STRG.7725.3,STRG.7725.4,blat.proc3825168.chain_153	4	STRG.7725.1,blat.proc3825168.chain_154	2
scaffold_3	alt_acceptor	14364996	14364997	-	asmbl_39367	none	STRG.3778.1,Trinity_GG_2046_c0_g1_i1,blat.proc3825148.chain_3608	3	STRG.3778.2	1
scaffold_23	starts_in_intron	2414859	2414859	+	asmbl_31404	none	STRG.25716.4,blat.proc3825176.chain_2677	2	STRG.25716.2,STRG.25716.3	2
scaffold_23	spliced_intron	2164879	2165545	-	asmbl_30701	none	STRG.25690.2	1	STRG.25690.1,blat.proc3825160.chain_2856	2
scaffold_10	alt_donor	393199	393200	+	asmbl_2850	none	STRG.11927.2,Trinity_GG_23950_c1_g1_i3,blat.proc3825170.chain_688	3	STRG.11927.1,Trinity_GG_23950_c1_g1_i1,blat.proc3825170.chain_690	3
scaffold_23	retained_intron	6778984	6779031	+	asmbl_31655	none	Trinity_GG_31644_c0_g1_i1	1	STRG.26009.1	1
scaffold_2	alternate_exon	3333141	3333253	-	asmbl_22971	none	STRG.1763.1,blat.proc3825148.chain_1708	2	STRG.1763.2	1
scaffold_4	alt_donor	13825697	13825698	-	asmbl_43012,asmbl_43014	none	STRG.5009.2,STRG.5009.3,blat.proc3825150.chain_1167	3	STRG.5009.1,blat.proc3825150.chain_1168	2
scaffold_8	spliced_intron	4860984	4861241	-	asmbl_51812,asmbl_51814	none	STRG.9948.1,Trinity_GG_5566_c0_g1_i2,blat.proc3825152.chain_2240,blat.proc3825152.chain_2241	4	Trinity_GG_5566_c0_g2_i1,blat.proc3825152.chain_2242	2
scaffold_6	retained_intron	1550441	1550570	+	asmbl_46717	none	STRG.7202.1,Trinity_GG_21271_c0_g1_i2,blat.proc3825166.chain_3387	3	STRG.7202.2,Trinity_GG_21271_c0_g1_i1,blat.proc3825166.chain_3388	3
scaffold_10	alternate_exon	4574584	4574959	-	asmbl_4303	none	blat.proc3825154.chain_851	1	STRG.12293.1	1
scaffold_19	spliced_intron	9521510	9521794	+	asmbl_21606	none	STRG.22385.2	1	STRG.22385.1,blat.proc3825158.chain_3174	2
scaffold_1	spliced_intron	6299655	6299772	-	asmbl_348	none	STRG.427.2,blat.proc3825148.chain_327	2	STRG.427.1,STRG.427.3,blat.proc3825148.chain_325,blat.proc3825148.chain_330,blat.proc3825148.chain_331	5
scaffold_18	retained_intron	5725934	5726148	+	asmbl_20596	none	Trinity_GG_29052_c0_g1_i2,blat.proc3825174.chain_2269	2	STRG.21317.1,Trinity_GG_29052_c0_g1_i1,blat.proc3825174.chain_2270	3
scaffold_10	retained_intron	326050	326526	-	asmbl_3931	none	STRG.11917.2,Trinity_GG_6622_c0_g1_i1,blat.proc3825154.chain_435	3	STRG.11917.1,Trinity_GG_6622_c0_g1_i2,blat.proc3825154.chain_434	3
scaffold_2	retained_intron	15272780	15272879	+	asmbl_25014,asmbl_25015	none	blat.proc3825164.chain_2620,blat.proc3825164.chain_2622	2	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	8
scaffold_9	spliced_intron	16340481	16340560	+	asmbl_54592	none	blat.proc3825154.chain_245	1	STRG.11787.3	1
scaffold_12	spliced_intron	7422321	7422854	-	asmbl_8584	none	STRG.14825.2,blat.proc3825154.chain_3338	2	STRG.14825.1,blat.proc3825154.chain_3339,blat.proc3825154.chain_3340,blat.proc3825154.chain_3341	4
scaffold_13	retained_intron	8518420	8518604	+	asmbl_11133	none	Trinity_GG_26177_c0_g1_i1,Trinity_GG_26177_c0_g1_i3,blat.proc3825172.chain_900	3	STRG.16127.1,blat.proc3825172.chain_902	2
scaffold_16	alternate_exon	15231651	15231847	+	asmbl_16725	none	STRG.19889.1	1	STRG.19889.2,Trinity_GG_28164_c1_g1_i1	2
scaffold_3	retained_exon	1840093	1840248	+	asmbl_39892	none	STRG.3005.1,blat.proc3825164.chain_3256	2	STRG.3005.2	1
scaffold_4	starts_in_intron	12690156	12690156	-	asmbl_42949	none	STRG.4910.2,Trinity_GG_2694_c1_g1_i1,blat.proc3825150.chain_1022	3	STRG.4910.1,blat.proc3825150.chain_1019	2
scaffold_9	ends_in_intron	8940699	8940699	-	asmbl_55150	none	blat.proc3825152.chain_3426	1	STRG.11280.1,STRG.11280.2,blat.proc3825152.chain_3427,blat.proc3825152.chain_3429,blat.proc3825152.chain_3430,blat.proc3825152.chain_3431	6
scaffold_566	spliced_intron	3943	4024	+	asmbl_46581	none	blat.proc3825172.chain_735	1	blat.proc3825172.chain_736	1
scaffold_27	alternate_exon	390594	390986	-	asmbl_36688	none	STRG.28565.2	1	STRG.28565.1,blat.proc3825162.chain_1812	2
scaffold_14	starts_in_intron	6902354	6902354	+	asmbl_12115	none	blat.proc3825172.chain_1912	1	STRG.17131.1,STRG.17131.2,blat.proc3825172.chain_1908,blat.proc3825172.chain_1909	4
scaffold_27	starts_in_intron	9136612	9136612	+	asmbl_36513	none	Trinity_GG_33492_c0_g1_i3,blat.proc3825178.chain_2404	2	STRG.29170.1,Trinity_GG_33492_c0_g1_i1,Trinity_GG_33492_c0_g1_i4,blat.proc3825178.chain_2401,blat.proc3825178.chain_2402,blat.proc3825178.chain_2403	6
scaffold_14	spliced_intron	3161368	3162176	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11918	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i4,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	7	Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	7
scaffold_1	starts_in_intron	17670294	17670294	-	asmbl_1056	none	blat.proc3825148.chain_1230	1	STRG.1238.1,blat.proc3825148.chain_1231	2
scaffold_9	retained_intron	11851343	11852018	-	asmbl_55337	none	blat.proc3825152.chain_3716	1	STRG.11503.2,blat.proc3825152.chain_3713	2
scaffold_1	spliced_intron	1994334	1994743	+	asmbl_1525,asmbl_1526	none	STRG.128.1,Trinity_GG_17420_c0_g1_i2,blat.proc3825164.chain_261,blat.proc3825164.chain_263	4	blat.proc3825164.chain_262	1
scaffold_28	alternate_exon	8316810	8316926	-	asmbl_38453	none	STRG.29908.1,blat.proc3825162.chain_3098	2	STRG.29908.2,STRG.29908.3	2
scaffold_4	alt_acceptor	7027734	7027735	+	asmbl_41445	none	blat.proc3825166.chain_997	1	STRG.4537.1,STRG.4537.2,blat.proc3825166.chain_995,blat.proc3825166.chain_996	4
scaffold_16	alternate_exon	8642666	8642759	+	asmbl_16433	none	STRG.19492.3	1	STRG.19492.1,STRG.19492.2,STRG.19492.4,blat.proc3825174.chain_368	4
scaffold_8	ends_in_intron	12709899	12709899	+	asmbl_53338	none	Trinity_GG_23135_c0_g1_i1,blat.proc3825168.chain_3034	2	STRG.10444.1,Trinity_GG_23135_c0_g1_i2,blat.proc3825168.chain_3035	3
scaffold_14	retained_exon	4154138	4154261	+	asmbl_11978	none	STRG.16971.2	1	STRG.16971.1,STRG.16971.3	2
scaffold_19	retained_exon	10851587	10851622	-	asmbl_22364	none	STRG.22428.1	1	STRG.22428.2,Trinity_GG_12436_c0_g1_i3,blat.proc3825158.chain_3112	3
scaffold_28	ends_in_intron	2651506	2651506	+	asmbl_37396	none	blat.proc3825178.chain_2672	1	STRG.29457.1,STRG.29457.2,blat.proc3825178.chain_2671	3
scaffold_16	ends_in_intron	15218987	15218987	+	asmbl_16720	none	blat.proc3825174.chain_760	1	STRG.19882.1,STRG.19882.2	2
scaffold_10	starts_in_intron	11970020	11970020	+	asmbl_3512	none	Trinity_GG_24389_c0_g1_i14,blat.proc3825170.chain_1451	2	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.5,STRG.12838.6,Trinity_GG_24389_c0_g1_i5,blat.proc3825170.chain_1447	7
scaffold_3	skipped_exon	14576071	14578468	-	asmbl_39397	none	STRG.3797.2,blat.proc3825148.chain_3740	2	STRG.3797.1,blat.proc3825148.chain_3741	2
scaffold_2	alt_acceptor	2292046	2292047	-	asmbl_22883	none	STRG.1669.2	1	STRG.1669.1	1
scaffold_5	starts_in_intron	12556539	12556539	-	asmbl_44470	none	Trinity_GG_3647_c0_g1_i2,blat.proc3825150.chain_2678	2	STRG.6494.1,Trinity_GG_3647_c0_g1_i3,blat.proc3825150.chain_2679	3
scaffold_3	alternate_exon	16777554	16779862	+	asmbl_40632	none	STRG.3931.1,blat.proc3825166.chain_411	2	STRG.3931.2	1
scaffold_5	alt_donor	14780492	14780493	+	asmbl_45966	none	STRG.6678.2,Trinity_GG_20948_c0_g1_i1,blat.proc3825166.chain_2846	3	STRG.6678.1	1
scaffold_23	alternate_exon	10938228	10938353	-	asmbl_31179	none	blat.proc3825160.chain_3413,blat.proc3825160.chain_3414	2	STRG.26299.1,STRG.26299.2	2
scaffold_1	retained_intron	13100329	13100568	-	asmbl_791	none	STRG.947.1,blat.proc3825148.chain_865	2	blat.proc3825148.chain_867	1
scaffold_43	alt_acceptor	782	783	-	asmbl_43697	none	STRG.30047.7	1	STRG.30047.2,STRG.30047.6	2
scaffold_27	retained_intron	5320907	5320932	-	asmbl_37002	none	Trinity_GG_16238_c0_g1_i1,blat.proc3825162.chain_2188	2	STRG.28952.1	1
scaffold_25	alt_donor	4538956	4538957	+	asmbl_33509	none	STRG.27392.1,blat.proc3825178.chain_495	2	blat.proc3825178.chain_493	1
scaffold_1	spliced_intron	13030601	13030736	+	asmbl_2298	none	STRG.937.1	1	Trinity_GG_17877_c0_g1_i2,blat.proc3825164.chain_1092	2
scaffold_22	alt_acceptor	2963785	2963786	-	asmbl_29159	none	STRG.24785.2	1	STRG.24785.1,blat.proc3825160.chain_1971	2
scaffold_15	alt_acceptor	15450390	15450391	+	asmbl_15788	none	Trinity_GG_27706_c0_g1_i6,blat.proc3825172.chain_3625	2	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i3,blat.proc3825172.chain_3619,blat.proc3825172.chain_3621,blat.proc3825172.chain_3624	7
scaffold_10	alt_acceptor	3421168	3421169	-	asmbl_4205	none	STRG.12173.1,blat.proc3825154.chain_732	2	STRG.12173.2,blat.proc3825154.chain_733	2
scaffold_7	ends_in_intron	6067379	6067379	-	asmbl_50914	none	Trinity_GG_5032_c0_g1_i1,blat.proc3825152.chain_1293	2	STRG.8904.1,blat.proc3825152.chain_1294	2
scaffold_4	spliced_intron	12374031	12374180	-	asmbl_42906	none	STRG.4872.1,blat.proc3825150.chain_1070	2	blat.proc3825150.chain_1069	1
scaffold_21	spliced_intron	7367552	7367674	-	asmbl_27800,asmbl_27802	none	STRG.24259.1,blat.proc3825160.chain_1407,blat.proc3825160.chain_1410	3	blat.proc3825160.chain_1408	1
scaffold_18	starts_in_intron	7199516	7199516	+	asmbl_20719	none	Trinity_GG_29093_c1_g1_i1,blat.proc3825174.chain_2365	2	STRG.21425.1,STRG.21425.3,Trinity_GG_29093_c0_g1_i2,blat.proc3825174.chain_2364	4
scaffold_16	skipped_exon	432537	433108	-	asmbl_16872	none	blat.proc3825158.chain_197	1	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_196,blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_200,blat.proc3825158.chain_201,blat.proc3825158.chain_202,blat.proc3825158.chain_203,blat.proc3825158.chain_204	10
scaffold_20	retained_exon	7802015	7802281	-	asmbl_25919	none	STRG.23330.1,blat.proc3825160.chain_447	2	STRG.23330.2	1
scaffold_7	alt_donor	9784425	9784426	-	asmbl_51066,asmbl_51068	none	STRG.9172.1,blat.proc3825152.chain_1517,blat.proc3825152.chain_1518	3	STRG.9172.2	1
scaffold_1	alternate_exon	15100652	15100759	+	asmbl_2421	none	STRG.1078.1,blat.proc3825164.chain_1237	2	STRG.1078.2,blat.proc3825164.chain_1236	2
scaffold_8	starts_in_intron	11275103	11275103	+	asmbl_53211	none	STRG.10346.4,blat.proc3825168.chain_2912	2	STRG.10346.1,STRG.10346.2,STRG.10346.3,Trinity_GG_23069_c0_g1_i1,Trinity_GG_23069_c0_g1_i2,blat.proc3825168.chain_2911,blat.proc3825168.chain_2914	7
scaffold_20	ends_in_intron	725996	725996	+	asmbl_26375	none	blat.proc3825174.chain_3741	1	STRG.22777.2	1
scaffold_19	retained_exon	9376376	9376478	-	asmbl_22330	none	STRG.22371.2	1	STRG.22371.1,blat.proc3825158.chain_3160	2
scaffold_8	alt_donor	2856684	2856685	-	asmbl_51721	none	STRG.9814.1,blat.proc3825152.chain_2090	2	STRG.9814.2,blat.proc3825152.chain_2091	2
scaffold_2	alt_acceptor	7266583	7266584	-	asmbl_23242	none	STRG.2061.1,Trinity_GG_1102_c0_g1_i1,blat.proc3825148.chain_1989	3	STRG.2061.2	1
scaffold_13	spliced_intron	4656102	4656354	+	asmbl_10819,asmbl_10821	none	STRG.15801.2,STRG.15801.3,blat.proc3825172.chain_554	3	STRG.15801.1,blat.proc3825172.chain_553	2
scaffold_1555	skipped_exon	479	1785	-	asmbl_15974	none	STRG.30628.2	1	STRG.30628.1	1
scaffold_25	alt_acceptor	5557695	5557696	-	asmbl_34260	none	STRG.27452.3	1	STRG.27452.1,blat.proc3825162.chain_834	2
scaffold_13	skipped_exon	5598978	5599604	-	asmbl_9700	none	STRG.15869.2	1	STRG.15869.1	1
scaffold_1	alt_donor	12754530	12754531	+	asmbl_2253	none	STRG.896.2,blat.proc3825164.chain_1095	2	STRG.896.3,Trinity_GG_17878_c0_g1_i3,blat.proc3825164.chain_1093	3
scaffold_28	starts_in_intron	5330522	5330522	+	asmbl_37582	none	Trinity_GG_33767_c0_g1_i2,blat.proc3825178.chain_2864	2	STRG.29683.1,Trinity_GG_33767_c0_g1_i1,blat.proc3825178.chain_2865	3
scaffold_18	retained_intron	8436469	8436543	-	asmbl_20012,asmbl_20013	none	STRG.21523.2,STRG.21523.3,blat.proc3825158.chain_2422	3	STRG.21523.1,Trinity_GG_12033_c0_g1_i2,blat.proc3825158.chain_2423	3
scaffold_2	retained_intron	15272586	15272673	+	asmbl_25014,asmbl_25015,asmbl_25020	none	blat.proc3825164.chain_2615,blat.proc3825164.chain_2620,blat.proc3825164.chain_2622	3	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7
scaffold_13	retained_intron	3027963	3028113	-	asmbl_9507	none	STRG.15608.1,blat.proc3825156.chain_456	2	STRG.15608.2	1
scaffold_21	spliced_intron	2947813	2947912	-	asmbl_27495	none	STRG.23917.3,blat.proc3825160.chain_988	2	STRG.23917.2,blat.proc3825160.chain_984	2
scaffold_2	skipped_exon	10637962	10638369	-	asmbl_23428,asmbl_23429	none	STRG.2224.3,blat.proc3825148.chain_2260	2	STRG.2224.1,blat.proc3825148.chain_2261,blat.proc3825148.chain_2262,blat.proc3825148.chain_2263	4
scaffold_322	alt_acceptor	6549	6550	-	asmbl_40973	none	STRG.30281.1	1	STRG.30281.2	1
scaffold_22	spliced_intron	3532808	3532917	-	asmbl_29175	none	STRG.24801.1	1	Trinity_GG_13860_c0_g1_i1	1
scaffold_12	retained_intron	4721240	4721269	-	asmbl_8433,asmbl_8434,asmbl_8437	none	STRG.14649.1,Trinity_GG_8146_c0_g1_i5,blat.proc3825154.chain_3098,blat.proc3825154.chain_3100	4	STRG.14649.4	1
scaffold_4	alt_acceptor	5278642	5278643	-	asmbl_42589	none	STRG.4425.1	1	STRG.4425.2,STRG.4425.3,blat.proc3825150.chain_680,blat.proc3825150.chain_681	4
scaffold_26	alt_donor	3345546	3345547	-	asmbl_35485	none	STRG.28013.2	1	STRG.28013.1,STRG.28013.3,blat.proc3825162.chain_1262	3
scaffold_8	retained_intron	4859932	4860106	-	asmbl_51814	none	blat.proc3825152.chain_2241	1	STRG.9948.1,Trinity_GG_5566_c0_g1_i2,blat.proc3825152.chain_2240	3
scaffold_7	starts_in_intron	1389204	1389204	-	asmbl_50724,asmbl_50725	none	STRG.8652.2,blat.proc3825152.chain_1123	2	STRG.8652.1,blat.proc3825152.chain_1118,blat.proc3825152.chain_1124	3
scaffold_13	retained_intron	5208212	5208649	+	asmbl_10831	none	Trinity_GG_26004_c0_g1_i2,blat.proc3825172.chain_552	2	STRG.15826.1,Trinity_GG_26004_c0_g1_i1,blat.proc3825172.chain_551	3
scaffold_27	starts_in_intron	4139893	4139893	+	asmbl_36258	none	Trinity_GG_33292_c0_g1_i5,blat.proc3825178.chain_2063	2	STRG.28875.1	1
scaffold_1	retained_exon	15281137	15281618	+	asmbl_2439	none	STRG.1094.2	1	STRG.1094.3,blat.proc3825164.chain_1250	2
scaffold_1	retained_intron	22133297	22134524	+	asmbl_2682	none	STRG.1487.3,Trinity_GG_18164_c1_g1_i1,blat.proc3825164.chain_1616	3	STRG.1487.1	1
scaffold_19	alternate_exon	688505	691035	-	asmbl_21995	none	STRG.21849.1,STRG.21849.2,Trinity_GG_12186_c1_g1_i1,blat.proc3825158.chain_2693	4	STRG.21849.3,blat.proc3825158.chain_2692	2
scaffold_21	spliced_intron	6448011	6448185	+	asmbl_28645	none	STRG.24164.1,Trinity_GG_30692_c0_g1_i2,blat.proc3825176.chain_1353	3	Trinity_GG_30692_c0_g1_i1,blat.proc3825176.chain_1352	2
scaffold_18	alt_donor	5905823	5905824	-	asmbl_19875	none	STRG.21337.1	1	STRG.21337.2,STRG.21337.3,STRG.21337.4	3
scaffold_22	retained_exon	3790472	3790504	-	asmbl_29186,asmbl_29188	none	STRG.24812.3,blat.proc3825160.chain_1934,blat.proc3825160.chain_1935	3	STRG.24812.1,STRG.24812.2	2
scaffold_11	starts_in_intron	17360598	17360598	+	asmbl_6218	none	STRG.14403.3	1	STRG.14403.2	1
scaffold_7	retained_exon	13960540	13960664	+	asmbl_50392	none	STRG.9495.2,Trinity_GG_22592_c0_g1_i1,blat.proc3825168.chain_2025	3	blat.proc3825168.chain_2027	1
scaffold_3	retained_exon	8192021	8193251	-	asmbl_39010	none	STRG.3440.1,blat.proc3825148.chain_3282	2	Trinity_GG_1828_c8_g1_i1	1
scaffold_25	alt_acceptor	8484355	8484356	-	asmbl_34449	none	STRG.27681.2	1	STRG.27681.1,blat.proc3825162.chain_995	2
scaffold_23	spliced_intron	10131332	10131437	-	asmbl_31125	none	STRG.26219.2	1	STRG.26219.1,blat.proc3825160.chain_3308	2
scaffold_14	retained_exon	8007596	8007645	+	asmbl_12187	none	STRG.17217.3	1	STRG.17217.2	1
scaffold_16	starts_in_intron	3565319	3565319	-	asmbl_16985	none	blat.proc3825158.chain_300	1	STRG.19171.1,STRG.19171.2,blat.proc3825158.chain_301,blat.proc3825158.chain_302	4
scaffold_28	ends_in_intron	5577526	5577526	+	asmbl_37595	none	Trinity_GG_33772_c0_g1_i6,blat.proc3825178.chain_2877	2	STRG.29692.3,Trinity_GG_33772_c0_g1_i4,blat.proc3825178.chain_2878	3
scaffold_7	ends_in_intron	31498	31498	+	asmbl_49536	none	Trinity_GG_22042_c1_g1_i5,blat.proc3825168.chain_1095	2	STRG.8587.1,STRG.8587.2,blat.proc3825168.chain_1094	3
scaffold_22	skipped_exon	690259	693133	+	asmbl_29883	none	STRG.24719.3	1	STRG.24719.1,STRG.24719.2,Trinity_GG_30979_c0_g1_i1,Trinity_GG_30979_c0_g1_i3,blat.proc3825176.chain_1847	5
scaffold_7	retained_intron	13173894	13174034	-	asmbl_51291	none	Trinity_GG_5287_c0_g1_i1,blat.proc3825152.chain_1758	2	STRG.9426.1,blat.proc3825152.chain_1759	2
scaffold_20	alternate_exon	6771038	6771054	+	asmbl_26682	none	STRG.23258.1,blat.proc3825176.chain_427	2	STRG.23258.2	1
scaffold_3	retained_exon	10628153	10628315	+	asmbl_40279	none	STRG.3513.1,blat.proc3825164.chain_3684	2	STRG.3513.3,blat.proc3825164.chain_3682	2
scaffold_1	retained_intron	5735051	5735263	+	asmbl_1766	none	blat.proc3825164.chain_506	1	STRG.389.1,STRG.389.2,blat.proc3825164.chain_505,blat.proc3825164.chain_508,blat.proc3825164.chain_509	5
scaffold_13	spliced_intron	8518137	8518344	+	asmbl_11134	none	STRG.16127.1,blat.proc3825172.chain_902	2	Trinity_GG_26177_c0_g1_i1	1
scaffold_27	alt_donor	9156491	9156492	+	asmbl_36516	none	STRG.29164.2	1	STRG.29164.1	1
scaffold_1	spliced_intron	1349041	1349123	+	asmbl_1476	none	STRG.81.1,Trinity_GG_17367_c0_g1_i2,blat.proc3825164.chain_177	3	STRG.81.2	1
scaffold_26	retained_exon	10121517	10121910	-	asmbl_35814,asmbl_35816,asmbl_35820,asmbl_35821	none	STRG.28530.1,STRG.28530.2,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710,blat.proc3825162.chain_1714,blat.proc3825162.chain_1715	8	Trinity_GG_15946_c0_g1_i13,blat.proc3825162.chain_1712	2
scaffold_15	retained_intron	13706834	13706990	-	asmbl_14656	none	STRG.18800.1,Trinity_GG_10560_c0_g1_i2,Trinity_GG_10560_c0_g1_i3,blat.proc3825156.chain_3649,blat.proc3825156.chain_3650	5	STRG.18800.2	1
scaffold_16	alternate_exon	7230742	7240373	-	asmbl_17170	none	STRG.19399.5,blat.proc3825158.chain_476	2	STRG.19399.6	1
scaffold_20	alt_donor	11566279	11566280	+	asmbl_27079	none	blat.proc3825176.chain_868	1	STRG.23663.1,STRG.23663.2,blat.proc3825176.chain_869	3
scaffold_14	spliced_intron	11569194	11569328	-	asmbl_13493	none	STRG.17494.1,blat.proc3825156.chain_2243	2	STRG.17494.2	1
scaffold_8	retained_intron	18534391	18534486	+	asmbl_53561	none	blat.proc3825168.chain_3259	1	STRG.10749.1	1
scaffold_8	starts_in_intron	9576325	9576325	-	asmbl_52051	none	blat.proc3825152.chain_2481	1	STRG.10214.1,blat.proc3825152.chain_2480,blat.proc3825152.chain_2482	3
scaffold_14	retained_exon	3225735	3225851	+	asmbl_11927	none	STRG.16910.1	1	STRG.16910.2,STRG.16910.3	2
scaffold_3	spliced_intron	13463114	13463211	+	asmbl_40439,asmbl_40441	none	STRG.3697.1,blat.proc3825166.chain_149,blat.proc3825166.chain_151	3	blat.proc3825166.chain_150	1
scaffold_19	alt_acceptor	6469093	6469094	+	asmbl_21417	none	STRG.22172.2,blat.proc3825174.chain_3172	2	STRG.22172.1,blat.proc3825174.chain_3173	2
scaffold_5	retained_intron	13162731	13162841	+	asmbl_45857	none	STRG.6552.2	1	STRG.6552.1	1
scaffold_13	starts_in_intron	7451589	7451589	+	asmbl_11055	none	Trinity_GG_26098_c0_g1_i4,blat.proc3825172.chain_746	2	STRG.16039.1,blat.proc3825172.chain_745,blat.proc3825172.chain_747	3
scaffold_21	retained_intron	7367840	7367962	-	asmbl_27801,asmbl_27802,asmbl_27803	none	Trinity_GG_13537_c0_g1_i2,blat.proc3825160.chain_1407,blat.proc3825160.chain_1408,blat.proc3825160.chain_1409	4	STRG.24259.1,blat.proc3825160.chain_1410	2
scaffold_15	alternate_exon	14743839	14744192	-	asmbl_14743	none	STRG.18889.2,blat.proc3825158.chain_14	2	STRG.18889.1,blat.proc3825158.chain_15	2
scaffold_6	spliced_intron	18098902	18099238	+	asmbl_47820	none	STRG.8502.5,blat.proc3825168.chain_1024	2	Trinity_GG_22016_c0_g1_i11,blat.proc3825168.chain_1019	2
scaffold_5	starts_in_intron	8675147	8675147	+	asmbl_45563	none	Trinity_GG_20647_c1_g1_i1,blat.proc3825166.chain_2327	2	STRG.6204.1,STRG.6204.2,blat.proc3825166.chain_2324,blat.proc3825166.chain_2325,blat.proc3825166.chain_2326	5
scaffold_9	ends_in_intron	15414730	15414730	-	asmbl_55528	none	blat.proc3825154.chain_199	1	STRG.11740.1,blat.proc3825154.chain_198	2
scaffold_9	alt_donor	15991359	15991360	-	asmbl_55561	none	STRG.11773.1,blat.proc3825154.chain_232	2	STRG.11773.2	1
scaffold_25	retained_intron	3084205	3084656	-	asmbl_34086	none	STRG.27251.4,Trinity_GG_15234_c0_g1_i6,blat.proc3825162.chain_558	3	STRG.27251.2,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555	4
scaffold_9	spliced_intron	9707335	9707760	+	asmbl_54236,asmbl_54237	none	STRG.11349.2,STRG.11349.6,blat.proc3825170.chain_143	3	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_139,blat.proc3825170.chain_142	4
scaffold_10	alt_donor	9375597	9375598	+	asmbl_3373,asmbl_3374	none	blat.proc3825170.chain_1253,blat.proc3825170.chain_1255	2	STRG.12676.1,blat.proc3825170.chain_1254	2
scaffold_5	retained_intron	13313903	13313990	-	asmbl_44541	none	blat.proc3825150.chain_2765	1	STRG.6579.1,blat.proc3825150.chain_2763,blat.proc3825150.chain_2764,blat.proc3825150.chain_2766	4
scaffold_10	spliced_intron	13000440	13000630	-	asmbl_4845	none	STRG.12908.1,Trinity_GG_7223_c1_g1_i2,blat.proc3825154.chain_1510	3	blat.proc3825154.chain_1512	1
scaffold_20	alt_donor	8154371	8154372	-	asmbl_25969,asmbl_25970	none	STRG.23363.2,blat.proc3825160.chain_490	2	STRG.23363.3,blat.proc3825160.chain_489	2
scaffold_12	spliced_intron	14123203	14123414	-	asmbl_8988,asmbl_8990	none	STRG.15244.1,STRG.15244.2,blat.proc3825156.chain_75	3	STRG.15244.3,Trinity_GG_8555_c0_g1_i1,Trinity_GG_8555_c0_g1_i3,blat.proc3825156.chain_77	4
scaffold_5	retained_intron	17226676	17226936	+	asmbl_46150,asmbl_46152	none	Trinity_GG_21086_c0_g1_i8,blat.proc3825166.chain_3073,blat.proc3825166.chain_3074	3	STRG.6896.1,blat.proc3825166.chain_3076,blat.proc3825166.chain_3077	3
scaffold_7	alt_acceptor	301380	301381	+	asmbl_49553	none	STRG.8601.1,blat.proc3825168.chain_1090	2	STRG.8601.2	1
scaffold_15	ends_in_intron	5659290	5659290	+	asmbl_15216	none	blat.proc3825172.chain_2903	1	STRG.18258.1,blat.proc3825172.chain_2901,blat.proc3825172.chain_2902	3
scaffold_13	ends_in_intron	11853346	11853346	+	asmbl_11312	none	Trinity_GG_26288_c1_g1_i1,blat.proc3825172.chain_1121	2	STRG.16321.1,STRG.16321.2,blat.proc3825172.chain_1120	3
scaffold_26	starts_in_intron	10119603	10119603	-	asmbl_35819	none	Trinity_GG_15946_c0_g1_i10,blat.proc3825162.chain_1711	2	STRG.28530.1,STRG.28530.2,STRG.28530.3,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,Trinity_GG_15946_c0_g1_i8,blat.proc3825162.chain_1709,blat.proc3825162.chain_1710,blat.proc3825162.chain_1712,blat.proc3825162.chain_1714,blat.proc3825162.chain_1715	13
scaffold_21	spliced_intron	7008589	7008751	-	asmbl_27772,asmbl_27775,asmbl_27776,asmbl_27777,asmbl_27778	none	STRG.24233.1,STRG.24233.2,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393,blat.proc3825160.chain_1394,blat.proc3825160.chain_1395	6	blat.proc3825160.chain_1390	1
scaffold_22	starts_in_intron	9177823	9177823	-	asmbl_29526	none	blat.proc3825160.chain_2372	1	STRG.25256.1,blat.proc3825160.chain_2373	2
scaffold_7	starts_in_intron	9299815	9299815	-	asmbl_51047	none	blat.proc3825152.chain_1464	1	STRG.9141.1,blat.proc3825152.chain_1465	2
scaffold_18	alt_acceptor	1394508	1394509	-	asmbl_19616,asmbl_19617,asmbl_19620,asmbl_19621,asmbl_19622	none	STRG.21025.2,STRG.21025.3,STRG.21025.4,blat.proc3825158.chain_2003,blat.proc3825158.chain_2005,blat.proc3825158.chain_2006	6	STRG.21025.1	1
scaffold_13	skipped_exon	9180594	9180908	-	asmbl_10007	none	STRG.16177.2,blat.proc3825156.chain_1086	2	STRG.16177.1,blat.proc3825156.chain_1084	2
scaffold_13	retained_intron	9997163	9997360	-	asmbl_10048	none	STRG.16241.2,blat.proc3825156.chain_1095	2	STRG.16241.1,blat.proc3825156.chain_1094	2
scaffold_19	starts_in_intron	9461071	9461071	+	asmbl_21600	none	STRG.22376.3,blat.proc3825174.chain_3368	2	STRG.22376.1,STRG.22376.2,blat.proc3825174.chain_3369,blat.proc3825174.chain_3370	4
scaffold_3	alternate_exon	10629028	10629347	+	asmbl_40287,asmbl_40288	none	blat.proc3825164.chain_3683,blat.proc3825164.chain_3685	2	STRG.3513.1,STRG.3513.4,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3684,blat.proc3825164.chain_3689	6
scaffold_20	alt_donor	6954612	6954613	-	asmbl_25854,asmbl_25855,asmbl_25858,asmbl_25859	none	STRG.23269.2,STRG.23269.3,blat.proc3825160.chain_306,blat.proc3825160.chain_307	4	STRG.23269.5,STRG.23269.6,blat.proc3825160.chain_308	3
scaffold_1	retained_intron	10949081	10950931	+	asmbl_2036,asmbl_2037	none	STRG.715.2,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_861	4	STRG.715.1,blat.proc3825164.chain_858	2
scaffold_11	ends_in_intron	8567520	8567520	+	asmbl_5801	none	Trinity_GG_24965_c0_g1_i2,blat.proc3825170.chain_2434	2	STRG.13873.1,Trinity_GG_24965_c0_g1_i1,Trinity_GG_24965_c0_g1_i3,blat.proc3825170.chain_2435,blat.proc3825170.chain_2436	5
scaffold_4	alternate_exon	19585467	19585629	-	asmbl_43455	none	blat.proc3825150.chain_1741	1	STRG.5543.1,STRG.5543.2,STRG.5543.3,STRG.5543.4,blat.proc3825150.chain_1740,blat.proc3825150.chain_1742,blat.proc3825150.chain_1743	7
scaffold_20	alternate_exon	1569955	1570189	-	asmbl_25585	none	STRG.22884.3,blat.proc3825160.chain_5	2	STRG.22884.1,blat.proc3825160.chain_6	2
scaffold_7	alt_acceptor	1679712	1679713	+	asmbl_49619	none	STRG.8650.2	1	STRG.8650.1,Trinity_GG_22070_c0_g1_i1,blat.proc3825168.chain_1149	3
scaffold_24	starts_in_intron	6168285	6168285	-	asmbl_32935	none	STRG.26677.1,blat.proc3825160.chain_3725	2	STRG.26677.2,STRG.26677.3,blat.proc3825160.chain_3724,blat.proc3825160.chain_3726	4
scaffold_3	alternate_exon	7714418	7714552	-	asmbl_38977,asmbl_38978,asmbl_38979,asmbl_38980,asmbl_38984	none	blat.proc3825148.chain_3197,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3200,blat.proc3825148.chain_3204	5	STRG.3368.1,Trinity_GG_1797_c2_g1_i1	2
scaffold_4	alt_acceptor	7048453	7048454	+	asmbl_41453	none	STRG.4539.2	1	STRG.4539.1,blat.proc3825166.chain_1010	2
scaffold_8	retained_intron	9112241	9112368	-	asmbl_51999	none	blat.proc3825152.chain_2371	1	STRG.10169.1,STRG.10169.2,blat.proc3825152.chain_2372	3
scaffold_28	retained_intron	7156851	7156991	+	asmbl_37636	none	Trinity_GG_33803_c0_g2_i1,blat.proc3825178.chain_2929	2	STRG.29775.1,STRG.29775.2,STRG.29775.3,blat.proc3825178.chain_2925,blat.proc3825178.chain_2926,blat.proc3825178.chain_2927,blat.proc3825178.chain_2928	7
scaffold_8	alternate_exon	12319659	12321228	-	asmbl_52188,asmbl_52193,asmbl_52194	none	STRG.10413.1,blat.proc3825152.chain_2632,blat.proc3825152.chain_2633,blat.proc3825152.chain_2636	4	STRG.10413.2,STRG.10413.3,blat.proc3825152.chain_2631,blat.proc3825152.chain_2635	4
scaffold_4	alternate_exon	8983311	8983363	+	asmbl_41600	none	STRG.4711.2	1	STRG.4711.1,blat.proc3825166.chain_1167	2
scaffold_28	ends_in_intron	3158542	3158542	+	asmbl_37448	none	blat.proc3825178.chain_2708	1	STRG.29526.1,blat.proc3825178.chain_2709	2
scaffold_27	alt_acceptor	2436367	2436368	+	asmbl_36085	none	STRG.28717.1	1	STRG.28717.2	1
scaffold_5	alt_donor	16793394	16793395	-	asmbl_44778	none	STRG.6867.2,blat.proc3825150.chain_2980	2	STRG.6867.3	1
scaffold_9	spliced_intron	6904964	6905103	-	asmbl_55093	none	STRG.11202.1,Trinity_GG_6207_c0_g1_i1,blat.proc3825152.chain_3443	3	Trinity_GG_6207_c0_g1_i4,blat.proc3825152.chain_3444	2
scaffold_13	alt_acceptor	5339809	5339810	+	asmbl_10837,asmbl_10839	none	STRG.15832.1,blat.proc3825172.chain_578,blat.proc3825172.chain_579	3	STRG.15832.2,blat.proc3825172.chain_580	2
scaffold_2	retained_intron	18614288	18614705	-	asmbl_23808	none	blat.proc3825148.chain_2648	1	blat.proc3825148.chain_2647	1
scaffold_8	alt_acceptor	11711669	11711670	-	asmbl_52156	none	STRG.10367.2	1	STRG.10367.1,Trinity_GG_5750_c0_g1_i1,blat.proc3825152.chain_2571	3
scaffold_7	alternate_exon	11874202	11874284	-	asmbl_51174,asmbl_51175	none	STRG.9306.1,STRG.9306.2	2	Trinity_GG_5251_c0_g1_i3,blat.proc3825152.chain_1679	2
scaffold_7	alternate_exon	1402667	1417399	-	asmbl_50718	none	STRG.8652.1,blat.proc3825152.chain_1124	2	blat.proc3825152.chain_1117	1
scaffold_19	spliced_intron	5197616	5197930	+	asmbl_21363	none	STRG.22091.1,blat.proc3825174.chain_3058	2	STRG.22091.2,blat.proc3825174.chain_3057	2
scaffold_7	starts_in_intron	12540916	12540916	-	asmbl_51238	none	STRG.9363.2,blat.proc3825152.chain_1714	2	STRG.9363.1,STRG.9363.3,STRG.9363.4,STRG.9363.5,blat.proc3825152.chain_1713,blat.proc3825152.chain_1717	6
scaffold_11	skipped_exon	3092262	3093974	+	asmbl_5399	none	STRG.13431.2,blat.proc3825170.chain_1961	2	STRG.13431.1	1
scaffold_2	retained_intron	17014420	17014564	-	asmbl_23707	none	STRG.2614.2,Trinity_GG_1405_c0_g1_i2,blat.proc3825148.chain_2526	3	STRG.2614.1,blat.proc3825148.chain_2525	2
scaffold_3	retained_exon	13425154	13425197	-	asmbl_39264	none	STRG.3693.4	1	STRG.3693.1,STRG.3693.3,blat.proc3825148.chain_3584,blat.proc3825148.chain_3585,blat.proc3825148.chain_3590	5
scaffold_5	alt_donor	4855684	4855685	-	asmbl_44015,asmbl_44017,asmbl_44019	none	STRG.5945.1,STRG.5945.2,blat.proc3825150.chain_2144,blat.proc3825150.chain_2146	4	blat.proc3825150.chain_2147	1
scaffold_17	starts_in_intron	12829075	12829075	+	asmbl_19291	none	Trinity_GG_28709_c0_g1_i1,blat.proc3825174.chain_1655	2	STRG.20778.1	1
scaffold_6	skipped_exon	18659791	18661833	+	asmbl_47834	none	STRG.8548.1,blat.proc3825168.chain_1034,blat.proc3825168.chain_1037	3	blat.proc3825168.chain_1035	1
scaffold_21	retained_intron	730780	730999	+	asmbl_28290	none	STRG.23764.3	1	STRG.23764.5	1
scaffold_1	retained_intron	9515894	9516029	-	asmbl_540,asmbl_542	none	STRG.637.2,STRG.637.3,blat.proc3825148.chain_627	3	STRG.637.1,blat.proc3825148.chain_628,blat.proc3825148.chain_630	3
scaffold_26	alt_acceptor	8576980	8576981	+	asmbl_35180	none	STRG.28441.2,blat.proc3825178.chain_1556	2	STRG.28441.1,blat.proc3825178.chain_1555	2
scaffold_1	alt_donor	9253204	9253205	+	asmbl_1971	none	STRG.619.2	1	STRG.619.1,STRG.619.3,STRG.619.4,Trinity_GG_17679_c0_g1_i2,Trinity_GG_17679_c0_g1_i3,Trinity_GG_17679_c0_g1_i4,blat.proc3825164.chain_721,blat.proc3825164.chain_722,blat.proc3825164.chain_723	9
scaffold_21	skipped_exon	5519378	5520424	-	asmbl_27663	none	STRG.24083.1	1	STRG.24083.3	1
scaffold_8	alt_acceptor	12906338	12906339	-	asmbl_52244,asmbl_52247	none	STRG.10480.1,STRG.10480.2,blat.proc3825152.chain_2733	3	STRG.10480.3	1
scaffold_6	alt_acceptor	13575827	13575828	-	asmbl_48916	none	STRG.8098.3	1	STRG.8098.4,Trinity_GG_4614_c1_g1_i1	2
scaffold_2	retained_exon	16861119	16861232	+	asmbl_25146	none	STRG.2602.1,blat.proc3825164.chain_2898	2	STRG.2602.3,blat.proc3825164.chain_2903	2
scaffold_21	alt_donor	3120521	3120522	+	asmbl_28447	none	blat.proc3825176.chain_1171	1	STRG.23942.1,STRG.23942.2,blat.proc3825176.chain_1172	3
scaffold_7	ends_in_intron	8383111	8383111	+	asmbl_49988	none	blat.proc3825168.chain_1589	1	STRG.9076.1,blat.proc3825168.chain_1588	2
scaffold_9	ends_in_intron	5549077	5549077	-	asmbl_55012	none	Trinity_GG_6193_c2_g1_i1,blat.proc3825152.chain_3413	2	STRG.11127.1,STRG.11127.2,blat.proc3825152.chain_3406,blat.proc3825152.chain_3407,blat.proc3825152.chain_3409,blat.proc3825152.chain_3410,blat.proc3825152.chain_3411	7
scaffold_4	retained_intron	19357077	19357176	-	asmbl_43434,asmbl_43435,asmbl_43441	none	Trinity_GG_3086_c0_g1_i3,blat.proc3825150.chain_1679,blat.proc3825150.chain_1687,blat.proc3825150.chain_1688	4	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1680,blat.proc3825150.chain_1681,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	6
scaffold_19	alt_donor	10224679	10224680	+	asmbl_21627,asmbl_21628,asmbl_21632	none	STRG.22402.1,STRG.22402.2,STRG.22402.3,blat.proc3825174.chain_3299	4	blat.proc3825174.chain_3298	1
scaffold_2	alternate_exon	8071541	8071581	-	asmbl_23313	none	STRG.2104.1,blat.proc3825148.chain_2112	2	STRG.2104.2	1
scaffold_11	alt_donor	2061501	2061502	+	asmbl_5354	none	STRG.13366.4,blat.proc3825170.chain_1926	2	STRG.13366.1	1
scaffold_4	starts_in_intron	5049831	5049831	+	asmbl_41329,asmbl_41330	none	STRG.4395.2,Trinity_GG_19757_c0_g1_i1,blat.proc3825166.chain_876	3	STRG.4395.1,Trinity_GG_19757_c0_g1_i2,blat.proc3825166.chain_877	3
scaffold_13	spliced_intron	2271676	2271815	-	asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448	none	STRG.15548.1,STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	7	STRG.15548.3,STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_390,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_397,blat.proc3825156.chain_400	13
scaffold_500	spliced_intron	2522	2745	+	asmbl_46491,asmbl_46492,asmbl_46496	none	STRG.30357.3,STRG.30357.5,blat.proc3825178.chain_3440	3	STRG.30357.1,STRG.30357.4,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445,blat.proc3825178.chain_3446	5
scaffold_15	alt_acceptor	1265028	1265029	+	asmbl_14997,asmbl_14998	none	blat.proc3825172.chain_2635,blat.proc3825172.chain_2636	2	STRG.17942.1	1
scaffold_23	retained_exon	5765227	5765316	-	asmbl_30941	none	STRG.25951.3,STRG.25951.4,Trinity_GG_14536_c0_g2_i2,blat.proc3825160.chain_3140	4	STRG.25951.2,Trinity_GG_14536_c0_g2_i1,blat.proc3825160.chain_3141	3
scaffold_1	alt_donor	14320593	14320594	+	asmbl_2379,asmbl_2381	none	STRG.1027.1,blat.proc3825164.chain_1222,blat.proc3825164.chain_1223	3	STRG.1027.2,blat.proc3825164.chain_1224	2
scaffold_21	retained_exon	2951596	2951683	+	asmbl_28427	none	Trinity_GG_30578_c0_g1_i4,blat.proc3825176.chain_1160	2	STRG.23920.1,STRG.23920.2,blat.proc3825176.chain_1159	3
scaffold_7	retained_intron	12387302	12387428	-	asmbl_51207	none	blat.proc3825152.chain_1657	1	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1655,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1660,blat.proc3825152.chain_1661	7
scaffold_8	starts_in_intron	9868129	9868129	+	asmbl_53124	none	blat.proc3825168.chain_2816	1	STRG.10233.2,blat.proc3825168.chain_2817,blat.proc3825168.chain_2818,blat.proc3825168.chain_2819,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	6
scaffold_21	alternate_exon	5775062	5775179	-	asmbl_27696	none	blat.proc3825160.chain_1201	1	STRG.24114.2,blat.proc3825160.chain_1203	2
scaffold_6	retained_exon	18048348	18048443	-	asmbl_49223	none	STRG.8487.2,blat.proc3825152.chain_919	2	STRG.8487.1,blat.proc3825152.chain_920	2
scaffold_24	retained_exon	5940322	5940366	+	asmbl_32265	none	blat.proc3825176.chain_3666	1	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3669,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	14
scaffold_15	ends_in_intron	13721472	13721472	+	asmbl_15655	none	blat.proc3825172.chain_3419	1	STRG.18806.1,blat.proc3825172.chain_3418,blat.proc3825172.chain_3420	3
scaffold_19	retained_intron	13161925	13162003	+	asmbl_21860	none	blat.proc3825174.chain_3672	1	STRG.22640.1,STRG.22640.2,blat.proc3825174.chain_3673	3
scaffold_28	alt_acceptor	3863126	3863127	-	asmbl_38184	none	STRG.29581.1	1	STRG.29581.2	1
scaffold_8	starts_in_intron	15336540	15336540	+	asmbl_53401	none	Trinity_GG_23179_c0_g1_i1,blat.proc3825168.chain_3087	2	STRG.10559.1,STRG.10559.2,blat.proc3825168.chain_3089,blat.proc3825168.chain_3090	4
scaffold_3	retained_intron	7972688	7972773	+	asmbl_40189	none	blat.proc3825164.chain_3590	1	STRG.3384.2	1
scaffold_7	starts_in_intron	7652947	7652947	-	asmbl_50964	none	blat.proc3825152.chain_1428	1	STRG.9017.1,Trinity_GG_5099_c0_g1_i1,blat.proc3825152.chain_1429	3
scaffold_5	alt_acceptor	7320450	7320451	+	asmbl_45491	none	STRG.6129.2	1	STRG.6129.1,Trinity_GG_20663_c0_g2_i1,blat.proc3825166.chain_2350	3
scaffold_12	alternate_exon	5464177	5464291	-	asmbl_8497,asmbl_8498,asmbl_8501	none	STRG.14703.1,STRG.14703.2,STRG.14703.5,blat.proc3825154.chain_3235,blat.proc3825154.chain_3236	5	STRG.14703.3,STRG.14703.4,blat.proc3825154.chain_3237	3
scaffold_14	retained_exon	8695771	8695878	-	asmbl_13337,asmbl_13339	none	STRG.17305.1,blat.proc3825156.chain_2143,blat.proc3825156.chain_2145	3	STRG.17305.2,blat.proc3825156.chain_2144	2
scaffold_14	retained_intron	11513522	11513728	+	asmbl_12381	none	STRG.17482.1,Trinity_GG_26906_c0_g1_i2,Trinity_GG_26906_c0_g1_i3,blat.proc3825172.chain_2192,blat.proc3825172.chain_2193	5	STRG.17482.2	1
scaffold_20	spliced_intron	7469036	7469153	-	asmbl_25905,asmbl_25908,asmbl_25910	none	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_462,blat.proc3825160.chain_466	4	blat.proc3825160.chain_461,blat.proc3825160.chain_465,blat.proc3825160.chain_467	3
scaffold_26	retained_exon	3941905	3941985	-	asmbl_35512	none	STRG.28082.2,blat.proc3825162.chain_1375	2	STRG.28082.1	1
scaffold_27	alt_acceptor	937869	937870	-	asmbl_36723	none	STRG.28589.1,Trinity_GG_16003_c0_g1_i1,blat.proc3825162.chain_1845	3	STRG.28589.2	1
scaffold_13	spliced_intron	15672345	15672386	+	asmbl_11529	none	STRG.16612.4	1	STRG.16612.1,STRG.16612.2,STRG.16612.3,STRG.16612.5	4
scaffold_4	alternate_exon	6188551	6188630	-	asmbl_42660	none	STRG.4491.3,Trinity_GG_2477_c0_g1_i3,blat.proc3825150.chain_678	3	STRG.4491.1,Trinity_GG_2477_c0_g1_i1,blat.proc3825150.chain_677	3
scaffold_24	starts_in_intron	6083570	6083570	-	asmbl_32923	none	blat.proc3825162.chain_54	1	STRG.26666.2	1
scaffold_19	spliced_intron	5461618	5461705	+	asmbl_21377	none	blat.proc3825174.chain_3157	1	Trinity_GG_29546_c0_g3_i1,blat.proc3825174.chain_3162	2
scaffold_28	alt_donor	5611371	5611372	-	asmbl_38299	none	STRG.29697.3,Trinity_GG_16664_c0_g1_i8,blat.proc3825162.chain_2902	3	STRG.29697.2	1
scaffold_94	alt_acceptor	11046	11047	+	asmbl_55844	none	STRG.30138.1	1	blat.proc3825178.chain_3259	1
scaffold_10	starts_in_intron	10278265	10278265	-	asmbl_4713	none	Trinity_GG_7121_c0_g1_i4,blat.proc3825154.chain_1340	2	STRG.12719.2,STRG.12719.3,blat.proc3825154.chain_1345,blat.proc3825154.chain_1346,blat.proc3825154.chain_1348	5
scaffold_2	retained_intron	18771819	18771850	+	asmbl_25248	none	STRG.2756.1	1	STRG.2756.2	1
scaffold_21	ends_in_intron	7937501	7937501	-	asmbl_27871	none	Trinity_GG_13571_c0_g1_i1,blat.proc3825160.chain_1470	2	STRG.24331.1,blat.proc3825160.chain_1472,blat.proc3825160.chain_1473	3
scaffold_25	spliced_intron	994851	995030	-	asmbl_34016,asmbl_34017,asmbl_34018	none	STRG.27160.1,blat.proc3825162.chain_518,blat.proc3825162.chain_519,blat.proc3825162.chain_521	4	blat.proc3825162.chain_520	1
scaffold_22	spliced_intron	1008363	1008659	+	asmbl_29913,asmbl_29915,asmbl_29917	none	STRG.24754.2,blat.proc3825176.chain_1856,blat.proc3825176.chain_1858,blat.proc3825176.chain_1861	4	STRG.24754.4,blat.proc3825176.chain_1859	2
scaffold_26	starts_in_intron	9840412	9840412	-	asmbl_35795	none	blat.proc3825162.chain_1671	1	STRG.28545.1,STRG.28545.2,Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	4
scaffold_27	ends_in_intron	9137015	9137015	+	asmbl_36512	none	Trinity_GG_33492_c0_g1_i1,blat.proc3825178.chain_2402	2	STRG.29170.1,Trinity_GG_33492_c0_g1_i4,blat.proc3825178.chain_2401	3
scaffold_8	retained_intron	4340886	4341174	+	asmbl_52837	none	STRG.9915.3,blat.proc3825168.chain_2490	2	STRG.9915.2,blat.proc3825168.chain_2488	2
scaffold_13	starts_in_intron	6432973	6432973	-	asmbl_9786	none	blat.proc3825156.chain_849	1	STRG.15943.1,STRG.15943.2,blat.proc3825156.chain_845,blat.proc3825156.chain_846,blat.proc3825156.chain_847,blat.proc3825156.chain_850	6
scaffold_2	alt_donor	13072485	13072486	-	asmbl_23489,asmbl_23491,asmbl_23494	none	STRG.2337.2,STRG.2337.5,blat.proc3825148.chain_2340,blat.proc3825148.chain_2343	4	STRG.2337.1,STRG.2337.3,STRG.2337.4,blat.proc3825148.chain_2341,blat.proc3825148.chain_2342,blat.proc3825148.chain_2345	6
scaffold_28	ends_in_intron	3279855	3279855	-	asmbl_38142	none	blat.proc3825162.chain_2701	1	STRG.29546.1,blat.proc3825162.chain_2700	2
scaffold_8	alt_acceptor	11829370	11829371	+	asmbl_53272,asmbl_53274	none	STRG.10387.2,blat.proc3825168.chain_2982	2	STRG.10387.1	1
scaffold_25	alternate_exon	3688250	3690630	+	asmbl_33452	none	STRG.27315.1	1	STRG.27315.2	1
scaffold_20	retained_intron	11591608	11592897	-	asmbl_26163	none	Trinity_GG_13164_c0_g1_i25,Trinity_GG_13164_c0_g3_i1,blat.proc3825160.chain_696,blat.proc3825160.chain_704	4	STRG.23678.1,STRG.23678.2	2
scaffold_8	spliced_intron	11744324	11744678	+	asmbl_53259	none	STRG.10377.1,blat.proc3825168.chain_2857	2	STRG.10377.2,blat.proc3825168.chain_2856	2
scaffold_2	alt_donor	6761637	6761638	-	asmbl_23231,asmbl_23233	none	STRG.2029.1,STRG.2029.4,blat.proc3825148.chain_2011	3	STRG.2029.2,blat.proc3825148.chain_2012	2
scaffold_5	spliced_intron	16091466	16091548	+	asmbl_46046	none	STRG.6797.1,blat.proc3825166.chain_2939	2	blat.proc3825166.chain_2937	1
scaffold_13	spliced_intron	6616931	6617079	+	asmbl_10953	none	blat.proc3825172.chain_682	1	STRG.15957.1,blat.proc3825172.chain_680,blat.proc3825172.chain_681	3
scaffold_6	alt_donor	19116612	19116613	-	asmbl_49300,asmbl_49301	none	STRG.8585.1,STRG.8585.3,Trinity_GG_4894_c0_g1_i1,Trinity_GG_4894_c0_g1_i2,blat.proc3825152.chain_1021,blat.proc3825152.chain_1022	6	STRG.8585.5	1
scaffold_18	skipped_exon	8882159	8883788	-	asmbl_20036,asmbl_20038	none	STRG.21551.1,blat.proc3825158.chain_2468,blat.proc3825158.chain_2471	3	STRG.21551.3	1
scaffold_11	spliced_intron	224369	224543	-	asmbl_6385	none	STRG.13262.2	1	STRG.13262.1	1
scaffold_21	retained_intron	5171404	5171760	-	asmbl_27626	none	blat.proc3825160.chain_1240	1	STRG.24060.1,blat.proc3825160.chain_1237,blat.proc3825160.chain_1238,blat.proc3825160.chain_1239,blat.proc3825160.chain_1241,blat.proc3825160.chain_1242	6
scaffold_19	spliced_intron	11457726	11458092	-	asmbl_22386,asmbl_22387,asmbl_22388,asmbl_22390	none	STRG.22479.1,Trinity_GG_12484_c0_g1_i4,blat.proc3825158.chain_3197,blat.proc3825158.chain_3198,blat.proc3825158.chain_3199,blat.proc3825158.chain_3201	6	blat.proc3825158.chain_3200	1
scaffold_23	alt_acceptor	197909	197910	+	asmbl_31286	none	STRG.25536.2	1	STRG.25536.1	1
scaffold_4	alternate_exon	1907279	1907339	+	asmbl_41138	none	STRG.4205.2,blat.proc3825166.chain_666	2	STRG.4205.1	1
scaffold_14	starts_in_intron	272772	272772	-	asmbl_12812	none	STRG.16717.1,blat.proc3825156.chain_1528	2	STRG.16717.2	1
scaffold_23	alt_acceptor	1125066	1125067	+	asmbl_31307	none	STRG.25593.2,blat.proc3825176.chain_2509	2	STRG.25593.1,blat.proc3825176.chain_2510	2
scaffold_9	alt_donor	16575103	16575104	+	asmbl_54606	none	STRG.11800.2,blat.proc3825170.chain_593	2	STRG.11800.3	1
scaffold_9	alt_acceptor	1664289	1664290	-	asmbl_54826	none	STRG.10862.7	1	STRG.10862.5	1
scaffold_5	spliced_intron	12840721	12841915	+	asmbl_45825,asmbl_45827	none	STRG.6517.1,Trinity_GG_20807_c0_g1_i1,Trinity_GG_20807_c0_g1_i2,blat.proc3825166.chain_2620,blat.proc3825166.chain_2621	5	STRG.6517.2,STRG.6517.3,STRG.6517.4,Trinity_GG_20807_c0_g1_i3,blat.proc3825166.chain_2619,blat.proc3825166.chain_2622	6
scaffold_13	alt_donor	14564852	14564853	-	asmbl_10195,asmbl_10197,asmbl_10199,asmbl_10201	none	STRG.16504.3,STRG.16504.4,STRG.16504.5,Trinity_GG_9195_c1_g1_i6,blat.proc3825156.chain_1267,blat.proc3825156.chain_1270,blat.proc3825156.chain_1272	7	STRG.16504.1,blat.proc3825156.chain_1271	2
scaffold_10	ends_in_intron	3352489	3352489	-	asmbl_4194	none	Trinity_GG_6758_c0_g1_i3,blat.proc3825154.chain_686	2	STRG.12167.1,blat.proc3825154.chain_689	2
scaffold_3	starts_in_intron	5781745	5781745	-	asmbl_38863	none	blat.proc3825148.chain_3042	1	STRG.3244.2,STRG.3244.3,STRG.3244.4	3
scaffold_1	spliced_intron	6283987	6284587	-	asmbl_335,asmbl_337,asmbl_342,asmbl_344	none	STRG.423.1,STRG.423.5,Trinity_GG_229_c0_g1_i9,blat.proc3825148.chain_412,blat.proc3825148.chain_417,blat.proc3825148.chain_418	6	STRG.423.6,Trinity_GG_229_c0_g1_i13,blat.proc3825148.chain_413	3
scaffold_17	ends_in_intron	8620044	8620044	+	asmbl_19003,asmbl_19006,asmbl_19007	none	STRG.20473.1,STRG.20473.3,blat.proc3825174.chain_1336,blat.proc3825174.chain_1337,blat.proc3825174.chain_1338	5	STRG.20473.4,STRG.20473.5,blat.proc3825174.chain_1334,blat.proc3825174.chain_1335,blat.proc3825174.chain_1339	5
scaffold_6	spliced_intron	5753989	5754213	+	asmbl_46973,asmbl_46976,asmbl_46978	none	STRG.7534.1,blat.proc3825166.chain_3732,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	4	blat.proc3825166.chain_3731,blat.proc3825166.chain_3733,blat.proc3825166.chain_3735	3
scaffold_4	alt_acceptor	17631814	17631815	-	asmbl_43291	none	STRG.5356.1,blat.proc3825150.chain_1527	2	STRG.5356.2,STRG.5356.3	2
scaffold_15	alt_donor	2564009	2564010	+	asmbl_15066,asmbl_15067	none	STRG.18045.3,Trinity_GG_27217_c0_g1_i9	2	STRG.18045.1,Trinity_GG_27217_c0_g1_i6	2
scaffold_24	alternate_exon	9087731	9087792	+	asmbl_32500,asmbl_32504,asmbl_32505	none	STRG.26951.4,blat.proc3825178.chain_160,blat.proc3825178.chain_161,blat.proc3825178.chain_162	4	STRG.26951.1,STRG.26951.2,STRG.26951.3,blat.proc3825178.chain_158	4
scaffold_6	starts_in_intron	10150464	10150464	-	asmbl_48664	none	Trinity_GG_4419_c0_g1_i1,blat.proc3825152.chain_205	2	STRG.7847.1,Trinity_GG_4419_c0_g1_i2,blat.proc3825152.chain_204	3
scaffold_24	ends_in_intron	5946393	5946393	+	asmbl_32270	none	STRG.26675.3	1	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	13
scaffold_5	alt_acceptor	17992938	17992939	+	asmbl_46200	none	STRG.6950.1,blat.proc3825166.chain_3061	2	STRG.6950.2	1
scaffold_12	skipped_exon	3327296	3329359	+	asmbl_7550	none	STRG.14555.5	1	STRG.14555.1,STRG.14555.2,STRG.14555.3,STRG.14555.4,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i2,Trinity_GG_25356_c0_g1_i3,blat.proc3825170.chain_3110,blat.proc3825170.chain_3112	9
scaffold_14	alt_acceptor	10641384	10641385	+	asmbl_12336	none	STRG.17418.1,blat.proc3825172.chain_2089	2	STRG.17418.2	1
scaffold_1	alt_acceptor	4615202	4615203	+	asmbl_1685	none	STRG.295.4	1	STRG.295.1,STRG.295.2,STRG.295.3,blat.proc3825164.chain_449	4
scaffold_5	retained_intron	6737990	6738085	-	asmbl_44135	none	Trinity_GG_3371_c0_g1_i2,blat.proc3825150.chain_2194	2	STRG.6083.1	1
scaffold_6	spliced_intron	1584416	1584521	+	asmbl_46721	none	STRG.7208.1	1	Trinity_GG_21288_c2_g1_i2	1
scaffold_4	retained_intron	10447539	10447632	-	asmbl_42853	none	blat.proc3825150.chain_917	1	STRG.4796.1,STRG.4796.2,blat.proc3825150.chain_912,blat.proc3825150.chain_913,blat.proc3825150.chain_914,blat.proc3825150.chain_915,blat.proc3825150.chain_916	7
scaffold_2	retained_intron	4018804	4018989	-	asmbl_23037	none	blat.proc3825148.chain_1814	1	STRG.1846.2	1
scaffold_6	alternate_exon	15470719	15470844	-	asmbl_49071	none	STRG.8300.2,blat.proc3825152.chain_672	2	STRG.8300.1,blat.proc3825152.chain_673	2
scaffold_2	retained_exon	16861119	16861215	+	asmbl_25147	none	STRG.2602.2,blat.proc3825164.chain_2902	2	STRG.2602.3,blat.proc3825164.chain_2903	2
scaffold_1	alternate_exon	6831193	6831526	-	asmbl_387	none	blat.proc3825148.chain_464	1	STRG.474.2,STRG.474.3,blat.proc3825148.chain_463	3
scaffold_12	alt_donor	1728559	1728560	-	asmbl_8298	none	STRG.14470.2,blat.proc3825154.chain_2970	2	STRG.14470.1	1
scaffold_9	ends_in_intron	4043910	4043910	+	asmbl_53935	none	STRG.11018.1,blat.proc3825168.chain_3544	2	STRG.11018.2	1
scaffold_17	ends_in_intron	2567457	2567457	+	asmbl_18664	none	blat.proc3825174.chain_933	1	STRG.20057.1,STRG.20057.2,STRG.20057.3,blat.proc3825174.chain_934,blat.proc3825174.chain_935	5
scaffold_17	alternate_exon	2535414	2535563	-	asmbl_17762	none	STRG.20049.3	1	STRG.20049.1,STRG.20049.2,blat.proc3825158.chain_1071,blat.proc3825158.chain_1072,blat.proc3825158.chain_1073	5
scaffold_13	retained_intron	2271926	2272065	-	asmbl_9437,asmbl_9438	none	STRG.15548.3,STRG.15548.4,Trinity_GG_8695_c0_g1_i10,blat.proc3825156.chain_394	4	STRG.15548.1,STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_396,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9
scaffold_4	retained_intron	4414352	4414502	+	asmbl_41244,asmbl_41262	none	STRG.4349.2,Trinity_GG_19749_c0_g1_i11,blat.proc3825166.chain_840,blat.proc3825166.chain_841	4	STRG.4349.4,blat.proc3825166.chain_844	2
scaffold_6	spliced_intron	7169018	7171242	+	asmbl_47052	none	STRG.7628.1	1	STRG.7628.2,STRG.7628.4,Trinity_GG_21499_c0_g1_i2,blat.proc3825168.chain_81	4
scaffold_14	skipped_exon	15584170	15584986	+	asmbl_12631	none	STRG.17811.7	1	STRG.17811.2,STRG.17811.6	2
scaffold_8	retained_intron	4783781	4783869	-	asmbl_51798	none	blat.proc3825152.chain_2219	1	STRG.9942.1,blat.proc3825152.chain_2218	2
scaffold_12	spliced_intron	7534953	7535423	+	asmbl_7766	none	STRG.14834.1,Trinity_GG_25511_c0_g1_i2,blat.proc3825170.chain_3383	3	Trinity_GG_25511_c0_g1_i1,blat.proc3825170.chain_3382	2
scaffold_7	retained_intron	3955229	3955398	-	asmbl_50834	none	blat.proc3825152.chain_1229	1	blat.proc3825152.chain_1236	1
scaffold_9	spliced_intron	5844925	5845204	-	asmbl_55041	none	STRG.11151.1,blat.proc3825152.chain_3330	2	Trinity_GG_6153_c0_g1_i1,blat.proc3825152.chain_3329	2
scaffold_7	retained_intron	13552407	13554063	-	asmbl_51312,asmbl_51313	none	blat.proc3825152.chain_1803,blat.proc3825152.chain_1804	2	STRG.9465.1,blat.proc3825152.chain_1802	2
scaffold_8	retained_intron	4860713	4860934	-	asmbl_51813	none	Trinity_GG_5566_c0_g2_i1,blat.proc3825152.chain_2242	2	STRG.9948.1,Trinity_GG_5566_c0_g1_i2,blat.proc3825152.chain_2240,blat.proc3825152.chain_2241	4
scaffold_8	retained_intron	6160014	6160658	-	asmbl_51861,asmbl_51865,asmbl_51866,asmbl_51868,asmbl_51870	none	STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2275	6	STRG.10030.1,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2276	4
scaffold_12	spliced_intron	14908049	14908188	+	asmbl_8097	none	STRG.15276.1	1	blat.proc3825172.chain_20	1
scaffold_19	starts_in_intron	12121699	12121699	+	asmbl_21748	none	Trinity_GG_29785_c1_g1_i2,blat.proc3825174.chain_3570	2	STRG.22540.1,blat.proc3825174.chain_3569	2
scaffold_17	alt_donor	13960040	13960041	+	asmbl_19372	none	blat.proc3825174.chain_1774	1	STRG.20882.1,STRG.20882.2,blat.proc3825174.chain_1771,blat.proc3825174.chain_1773,blat.proc3825174.chain_1775	5
scaffold_1	spliced_intron	857694	857888	-	asmbl_26,asmbl_28	none	STRG.44.1,blat.proc3825148.chain_41,blat.proc3825148.chain_42	3	STRG.44.2,blat.proc3825148.chain_43	2
scaffold_23	alt_donor	4899316	4899317	+	asmbl_31538	none	STRG.25884.2	1	STRG.25884.1,STRG.25884.4,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817	6
scaffold_20	starts_in_intron	8154503	8154503	-	asmbl_25968,asmbl_25970	none	STRG.23363.2,STRG.23363.3	2	blat.proc3825160.chain_490	1
scaffold_7	spliced_intron	18127677	18127784	+	asmbl_50510	none	blat.proc3825168.chain_2148	1	blat.proc3825168.chain_2149	1
scaffold_5	spliced_intron	4696426	4696467	+	asmbl_45289	none	STRG.5925.2	1	STRG.5925.1	1
scaffold_15	alt_acceptor	15355387	15355388	+	asmbl_15755	none	STRG.18922.2,blat.proc3825172.chain_3562	2	blat.proc3825172.chain_3563	1
scaffold_26	starts_in_intron	3562759	3562759	+	asmbl_34789	none	STRG.28036.5	1	STRG.28036.1,STRG.28036.2,STRG.28036.4	3
scaffold_2	alt_acceptor	11795699	11795700	+	asmbl_24774	none	STRG.2281.1,Trinity_GG_18588_c0_g1_i1,blat.proc3825164.chain_2459	3	blat.proc3825164.chain_2460	1
scaffold_14	starts_in_intron	177079	177079	-	asmbl_12786,asmbl_12787	none	STRG.16708.2,blat.proc3825156.chain_1507	2	STRG.16708.1,blat.proc3825156.chain_1509	2
scaffold_18	alt_donor	12935439	12935440	+	asmbl_20980	none	STRG.21740.2	1	blat.proc3825158.chain_2618	1
scaffold_5	ends_in_intron	5041943	5041943	+	asmbl_45330	none	blat.proc3825166.chain_2125	1	STRG.5958.3,STRG.5958.4	2
scaffold_1	skipped_exon	12462400	12463266	-	asmbl_720	none	STRG.867.1	1	STRG.867.2,STRG.867.3,STRG.867.5	3
scaffold_24	retained_exon	4281153	4281195	+	asmbl_32178	none	STRG.26586.2,blat.proc3825176.chain_3528	2	STRG.26586.3	1
scaffold_8	retained_intron	10040800	10041129	-	asmbl_52092	none	STRG.10261.1,blat.proc3825152.chain_2483	2	STRG.10261.3,blat.proc3825152.chain_2485	2
scaffold_16	alt_donor	14084620	14084621	-	asmbl_17429	none	STRG.19807.1	1	blat.proc3825158.chain_843	1
scaffold_20	starts_in_intron	5183653	5183653	+	asmbl_26611	none	Trinity_GG_30063_c0_g1_i1,blat.proc3825176.chain_294	2	STRG.23156.1,STRG.23156.2,blat.proc3825176.chain_293,blat.proc3825176.chain_295	4
scaffold_11	retained_intron	8099759	8099979	+	asmbl_5725,asmbl_5726	none	Trinity_GG_24917_c0_g1_i2,Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342,blat.proc3825170.chain_2345	4	STRG.13822.1,STRG.13822.2,STRG.13822.3,STRG.13822.4,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	12
scaffold_14	spliced_intron	8416699	8416856	+	asmbl_12243,asmbl_12245	none	STRG.17281.1,blat.proc3825172.chain_2049,blat.proc3825172.chain_2050	3	STRG.17281.2,STRG.17281.3,Trinity_GG_26820_c0_g1_i2,blat.proc3825172.chain_2052	4
scaffold_18	alt_acceptor	8726178	8726179	+	asmbl_20857,asmbl_20862	none	STRG.21537.3,blat.proc3825174.chain_2618,blat.proc3825174.chain_2620	3	STRG.21537.1,blat.proc3825174.chain_2616,blat.proc3825174.chain_2619	3
scaffold_13	alt_donor	7997265	7997266	-	asmbl_9927	none	STRG.16080.2,blat.proc3825156.chain_970,blat.proc3825156.chain_971	3	STRG.16080.1,STRG.16080.3,blat.proc3825156.chain_972,blat.proc3825156.chain_973,blat.proc3825156.chain_975	5
scaffold_2367	alt_acceptor	690	691	-	asmbl_31993	none	STRG.30744.2	1	STRG.30744.1,blat.proc3825164.chain_1	2
scaffold_14	retained_exon	6282857	6282910	+	asmbl_12056,asmbl_12057,asmbl_12058	none	STRG.17079.1,STRG.17079.2,STRG.17079.3,blat.proc3825172.chain_1848,blat.proc3825172.chain_1849,blat.proc3825172.chain_1853	6	STRG.17079.4,blat.proc3825172.chain_1850	2
scaffold_13	spliced_intron	381874	382053	-	asmbl_9323,asmbl_9326	none	STRG.15437.1,STRG.15437.3,blat.proc3825156.chain_263	3	STRG.15437.2,blat.proc3825156.chain_261	2
scaffold_8	alt_donor	9374318	9374319	-	asmbl_52025,asmbl_52028	none	STRG.10202.3,STRG.10202.4,blat.proc3825152.chain_2464	3	STRG.10202.5,STRG.10202.6,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463	4
scaffold_8	alt_donor	12917566	12917567	-	asmbl_52252,asmbl_52257	none	STRG.10480.4,STRG.10480.7,blat.proc3825152.chain_2737	3	STRG.10480.2,STRG.10480.3,STRG.10480.5,STRG.10480.6,blat.proc3825152.chain_2736,blat.proc3825152.chain_2738	6
scaffold_4	retained_intron	4113203	4113283	-	asmbl_42486,asmbl_42487,asmbl_42488	none	blat.proc3825150.chain_477,blat.proc3825150.chain_479,blat.proc3825150.chain_480	3	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_478,blat.proc3825150.chain_481,blat.proc3825150.chain_482	6
scaffold_24	alt_acceptor	7737492	7737493	-	asmbl_33058	none	Trinity_GG_15017_c0_g1_i2,blat.proc3825162.chain_201	2	STRG.26823.1,Trinity_GG_15017_c0_g1_i1,blat.proc3825162.chain_202	3
scaffold_4	retained_intron	19274656	19274833	-	asmbl_43417	none	Trinity_GG_3099_c0_g1_i3,blat.proc3825150.chain_1704	2	STRG.5511.1,Trinity_GG_3099_c0_g1_i2,blat.proc3825150.chain_1705,blat.proc3825150.chain_1706,blat.proc3825150.chain_1707	5
scaffold_21	alt_acceptor	7445925	7445926	+	asmbl_28738	none	STRG.24275.2	1	STRG.24275.1,blat.proc3825176.chain_1489,blat.proc3825176.chain_1490	3
scaffold_7	retained_intron	15272158	15272574	+	asmbl_50425,asmbl_50430,asmbl_50433	none	STRG.9546.3,STRG.9546.4,blat.proc3825168.chain_2125	3	STRG.9546.1,blat.proc3825168.chain_2120,blat.proc3825168.chain_2121,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2126	6
scaffold_18	retained_intron	632566	632852	+	asmbl_20311	none	STRG.21004.2,blat.proc3825174.chain_1852	2	STRG.21004.1,blat.proc3825174.chain_1853	2
scaffold_17	retained_exon	5998745	5999074	+	asmbl_18834	none	STRG.20285.4,Trinity_GG_28430_c1_g1_i2,blat.proc3825174.chain_1139,blat.proc3825174.chain_1140	4	STRG.20285.2,STRG.20285.5	2
scaffold_5	skipped_exon	3772202	3774132	+	asmbl_45238	none	STRG.5842.1	1	STRG.5842.2,STRG.5842.3,blat.proc3825166.chain_2078,blat.proc3825166.chain_2079	4
scaffold_1	spliced_intron	14276749	14276836	+	asmbl_2363,asmbl_2364,asmbl_2366,asmbl_2368	none	STRG.1023.1,STRG.1023.2,Trinity_GG_17932_c0_g1_i1,Trinity_GG_17932_c0_g1_i4,Trinity_GG_17932_c0_g1_i5,blat.proc3825164.chain_1200,blat.proc3825164.chain_1201,blat.proc3825164.chain_1203	8	Trinity_GG_17932_c0_g1_i2,blat.proc3825164.chain_1202	2
scaffold_6	alt_donor	3805756	3805757	+	asmbl_46863,asmbl_46867	none	STRG.7383.3,STRG.7383.4	2	STRG.7383.1,STRG.7383.2,STRG.7383.5	3
scaffold_27	skipped_exon	5797927	5799064	-	asmbl_37024	none	STRG.28982.1	1	STRG.28982.2	1
scaffold_24	alt_acceptor	1517799	1517800	+	asmbl_32081	none	STRG.26402.2	1	STRG.26402.1,blat.proc3825160.chain_3507	2
scaffold_14	spliced_intron	1178420	1178543	+	asmbl_11814	none	STRG.16774.1,Trinity_GG_26511_c0_g1_i3,blat.proc3825172.chain_1481	3	STRG.16774.2,Trinity_GG_26511_c0_g1_i4,blat.proc3825172.chain_1483	3
scaffold_14	ends_in_intron	13896197	13896197	+	asmbl_12511	none	blat.proc3825172.chain_2393	1	STRG.17673.1,STRG.17673.2,STRG.17673.3,STRG.17673.4,blat.proc3825172.chain_2392	5
scaffold_8	alternate_exon	11109547	11109591	-	asmbl_52131,asmbl_52132	none	STRG.10326.2,STRG.10326.3,blat.proc3825152.chain_2585,blat.proc3825152.chain_2586	4	STRG.10326.1	1
scaffold_21	alt_donor	7506747	7506748	-	asmbl_27830	none	STRG.24282.2	1	STRG.24282.1,STRG.24282.4,blat.proc3825160.chain_1439	3
scaffold_15	alt_acceptor	6957219	6957220	-	asmbl_14274	none	STRG.18300.3	1	STRG.18300.2,blat.proc3825156.chain_3147	2
scaffold_6	retained_intron	17881666	17881817	-	asmbl_49211	none	Trinity_GG_4813_c0_g1_i4,blat.proc3825152.chain_876	2	STRG.8481.1,STRG.8481.3,blat.proc3825152.chain_878,blat.proc3825152.chain_879,blat.proc3825152.chain_880	5
scaffold_8	retained_intron	18248240	18248548	-	asmbl_52524,asmbl_52529,asmbl_52530	none	STRG.10728.4,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3015,blat.proc3825152.chain_3017	5	STRG.10728.1	1
scaffold_1	starts_in_intron	2748682	2748682	-	asmbl_128	none	Trinity_GG_110_c0_g1_i1,blat.proc3825148.chain_185	2	STRG.176.4,Trinity_GG_110_c0_g1_i6	2
scaffold_1	alt_acceptor	5646087	5646088	+	asmbl_1738,asmbl_1740	none	STRG.360.3,STRG.360.4,blat.proc3825164.chain_426,blat.proc3825164.chain_428	4	STRG.360.1,STRG.360.2,STRG.360.5,blat.proc3825164.chain_424,blat.proc3825164.chain_425,blat.proc3825164.chain_427	6
scaffold_2	spliced_intron	14623203	14623311	+	asmbl_24963	none	STRG.2458.1,blat.proc3825164.chain_2726	2	blat.proc3825164.chain_2725	1
scaffold_13	retained_intron	7936040	7936337	-	asmbl_9915,asmbl_9918,asmbl_9919	none	STRG.16070.3,STRG.16070.4,blat.proc3825156.chain_876	3	STRG.16070.1,STRG.16070.2,blat.proc3825156.chain_874,blat.proc3825156.chain_875,blat.proc3825156.chain_877,blat.proc3825156.chain_878	6
scaffold_26	starts_in_intron	5557703	5557703	+	asmbl_35027	none	STRG.28266.2	1	STRG.28266.1,blat.proc3825178.chain_1302	2
scaffold_19	ends_in_intron	1612936	1612936	+	asmbl_21250	none	blat.proc3825174.chain_2959	1	STRG.21916.1,STRG.21916.2,blat.proc3825174.chain_2957,blat.proc3825174.chain_2958	4
scaffold_14	spliced_intron	7298351	7298744	+	asmbl_12149,asmbl_12150	none	STRG.17169.1,STRG.17169.2,blat.proc3825172.chain_1939,blat.proc3825172.chain_1940	4	STRG.17169.3,blat.proc3825172.chain_1941,blat.proc3825172.chain_1942	3
scaffold_13	ends_in_intron	5464440	5464440	+	asmbl_10853	none	blat.proc3825172.chain_528	1	STRG.15844.1,blat.proc3825172.chain_529	2
scaffold_7	starts_in_intron	12370120	12370120	+	asmbl_50248	none	Trinity_GG_22503_c0_g1_i1,blat.proc3825168.chain_1873	2	STRG.9336.1,blat.proc3825168.chain_1875,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878,blat.proc3825168.chain_1879	5
scaffold_22	retained_intron	8102654	8102969	-	asmbl_29451	none	blat.proc3825160.chain_2280	1	STRG.25166.1	1
scaffold_20	ends_in_intron	9817257	9817257	+	asmbl_26905	none	blat.proc3825176.chain_700	1	STRG.23526.1,Trinity_GG_30317_c0_g1_i2,blat.proc3825176.chain_699	3
scaffold_21	retained_exon	11315508	11315579	+	asmbl_28922	none	STRG.24606.1,blat.proc3825176.chain_1700	2	STRG.24606.2	1
scaffold_8	retained_intron	115861	115888	+	asmbl_52647	none	STRG.9713.2	1	STRG.9713.1	1
scaffold_22	alt_acceptor	10985971	10985972	-	asmbl_29635	none	STRG.25437.1,blat.proc3825160.chain_2619	2	STRG.25437.3,blat.proc3825160.chain_2618	2
scaffold_19	retained_intron	5155289	5155678	+	asmbl_21356	none	STRG.22084.2,blat.proc3825174.chain_3025	2	STRG.22084.1,STRG.22084.3,blat.proc3825174.chain_3027,blat.proc3825174.chain_3028	4
scaffold_23	skipped_exon	6988677	6989115	-	asmbl_30998	none	STRG.26022.3	1	STRG.26022.1,STRG.26022.2,blat.proc3825160.chain_3166,blat.proc3825160.chain_3167,blat.proc3825160.chain_3168	5
scaffold_19	alternate_exon	13131717	13138571	-	asmbl_22602	none	STRG.22634.1,blat.proc3825158.chain_3464	2	STRG.22634.2,Trinity_GG_12601_c0_g1_i1,blat.proc3825158.chain_3462	3
scaffold_18	starts_in_intron	7647256	7647256	+	asmbl_20755,asmbl_20756	none	STRG.21464.1,STRG.21464.2,Trinity_GG_29170_c0_g1_i1,Trinity_GG_29170_c0_g1_i3,blat.proc3825174.chain_2497,blat.proc3825174.chain_2498	6	Trinity_GG_29170_c0_g1_i2,blat.proc3825174.chain_2499	2
scaffold_6	alternate_exon	11562674	11562878	+	asmbl_47350	none	STRG.7955.1,Trinity_GG_21664_c1_g1_i1,blat.proc3825168.chain_398	3	STRG.7954.1,Trinity_GG_21664_c0_g1_i2,blat.proc3825168.chain_397	3
scaffold_228	starts_in_intron	4953	4953	-	asmbl_30562	none	blat.proc3825162.chain_3378	1	STRG.30244.1,STRG.30244.2,blat.proc3825162.chain_3373,blat.proc3825162.chain_3375	4
scaffold_3	retained_intron	6240997	6241570	-	asmbl_38933,asmbl_38936,asmbl_38937,asmbl_38941	none	STRG.3271.2,blat.proc3825148.chain_3136,blat.proc3825148.chain_3138,blat.proc3825148.chain_3142,blat.proc3825148.chain_3143	5	STRG.3271.1,STRG.3271.4,STRG.3271.5,STRG.3271.6,blat.proc3825148.chain_3139,blat.proc3825148.chain_3140,blat.proc3825148.chain_3141	7
scaffold_21	spliced_intron	11228603	11228728	-	asmbl_28097	none	STRG.24589.2	1	STRG.24589.1,blat.proc3825160.chain_1831	2
scaffold_12	alternate_exon	4214990	4214996	+	asmbl_7589,asmbl_7591	none	STRG.14601.1,blat.proc3825170.chain_3167,blat.proc3825170.chain_3169	3	STRG.14601.2,STRG.14601.3	2
scaffold_7	starts_in_intron	15287356	15287356	+	asmbl_50438	none	Trinity_GG_22615_c0_g1_i2,blat.proc3825168.chain_2065	2	STRG.9542.1,blat.proc3825168.chain_2066	2
scaffold_1	retained_intron	10950202	10950350	+	asmbl_2036,asmbl_2037,asmbl_2039,asmbl_2040	none	STRG.715.2,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_862	6	blat.proc3825164.chain_863	1
scaffold_23	retained_intron	10897406	10897606	+	asmbl_31892	none	blat.proc3825176.chain_3257	1	STRG.26291.1,blat.proc3825176.chain_3258	2
scaffold_28	alt_donor	2893191	2893192	+	asmbl_37418	none	STRG.29481.1,blat.proc3825178.chain_2626	2	STRG.29481.2,blat.proc3825178.chain_2627	2
scaffold_13	alt_acceptor	8300381	8300382	+	asmbl_11116,asmbl_11117,asmbl_11118	none	STRG.16123.1,blat.proc3825172.chain_896,blat.proc3825172.chain_897,blat.proc3825172.chain_898	4	STRG.16123.2	1
scaffold_20	starts_in_intron	4013423	4013423	-	asmbl_25722	none	blat.proc3825160.chain_116	1	blat.proc3825160.chain_115	1
scaffold_5	alt_donor	18993029	18993030	+	asmbl_46301	none	STRG.7016.1,Trinity_GG_21117_c1_g1_i2,blat.proc3825166.chain_3122	3	STRG.7016.2,Trinity_GG_21117_c1_g1_i1,blat.proc3825166.chain_3123	3
scaffold_14	spliced_intron	11513522	11513728	+	asmbl_12382	none	STRG.17482.2	1	STRG.17482.1,Trinity_GG_26906_c0_g1_i2,Trinity_GG_26906_c0_g1_i3,blat.proc3825172.chain_2192,blat.proc3825172.chain_2193	5
scaffold_24	spliced_intron	9952412	9952699	-	asmbl_33158	none	Trinity_GG_15063_c0_g1_i3	1	Trinity_GG_15063_c0_g1_i6	1
scaffold_11	spliced_intron	2500321	2500474	-	asmbl_6510	none	STRG.13408.1,blat.proc3825154.chain_2016	2	Trinity_GG_7530_c0_g1_i1,blat.proc3825154.chain_2017	2
scaffold_1	ends_in_intron	20134790	20134790	-	asmbl_1173	none	STRG.1386.6	1	STRG.1386.1,STRG.1386.2,STRG.1386.5	3
scaffold_25	alternate_exon	9697342	9697432	+	asmbl_33835	none	STRG.27783.1,Trinity_GG_32608_c0_g1_i1,blat.proc3825178.chain_822	3	STRG.27783.2	1
scaffold_2	skipped_exon	16860835	16861593	+	asmbl_25148	none	STRG.2602.3,blat.proc3825164.chain_2903	2	STRG.2602.1,STRG.2602.2,blat.proc3825164.chain_2898,blat.proc3825164.chain_2902	4
scaffold_6	alternate_exon	7990263	7994891	-	asmbl_48520	none	STRG.7677.2,blat.proc3825152.chain_40	2	STRG.7677.1	1
scaffold_3	starts_in_intron	6652620	6652620	+	asmbl_40102	none	STRG.3287.3	1	STRG.3287.1,STRG.3287.2,blat.proc3825164.chain_3534	3
scaffold_1	alt_acceptor	9267736	9267737	-	asmbl_530	none	STRG.625.2,blat.proc3825148.chain_560	2	STRG.625.1	1
scaffold_1	alt_donor	9253208	9253209	+	asmbl_1967,asmbl_1968,asmbl_1969	none	STRG.619.1,STRG.619.3,STRG.619.4,Trinity_GG_17679_c0_g1_i2,Trinity_GG_17679_c0_g1_i3,Trinity_GG_17679_c0_g1_i4,blat.proc3825164.chain_721,blat.proc3825164.chain_722,blat.proc3825164.chain_723	9	STRG.619.2	1
scaffold_13	retained_exon	12253535	12253612	+	asmbl_11348	none	STRG.16359.1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1115	3	STRG.16359.2,STRG.16359.3,Trinity_GG_26285_c0_g1_i1,blat.proc3825172.chain_1114	4
scaffold_7	alt_donor	15053529	15053530	-	asmbl_51358	none	blat.proc3825152.chain_1875	1	STRG.9524.2	1
scaffold_3	spliced_intron	14495657	14495730	-	asmbl_39379	none	blat.proc3825148.chain_3721	1	STRG.3790.1	1
scaffold_23	alt_acceptor	10764263	10764264	-	asmbl_31158	none	STRG.26268.2	1	STRG.26268.1,blat.proc3825160.chain_3381	2
scaffold_5	retained_intron	19145546	19145630	-	asmbl_44896	none	blat.proc3825150.chain_3121	1	STRG.7027.1,STRG.7027.2,blat.proc3825150.chain_3122	3
scaffold_2	spliced_intron	15274632	15274740	+	asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25018,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	6	Trinity_GG_18659_c1_g1_i2,blat.proc3825164.chain_2613	2
scaffold_14	alternate_exon	9586665	9586697	+	asmbl_12290	none	blat.proc3825172.chain_2111	1	STRG.17347.1,blat.proc3825172.chain_2110	2
scaffold_15	retained_intron	8039747	8039835	-	asmbl_14326	none	STRG.18380.2,blat.proc3825156.chain_3223,blat.proc3825156.chain_3225	3	blat.proc3825156.chain_3226	1
scaffold_11	ends_in_intron	9833355	9833355	+	asmbl_5907,asmbl_5910	none	STRG.14008.3,blat.proc3825170.chain_2558	2	STRG.14008.1,STRG.14008.2,STRG.14008.4,STRG.14008.5,blat.proc3825170.chain_2556,blat.proc3825170.chain_2557,blat.proc3825170.chain_2559,blat.proc3825170.chain_2564,blat.proc3825170.chain_2565	9
scaffold_20	starts_in_intron	1536377	1536377	+	asmbl_26422	none	STRG.22876.2	1	STRG.22876.1	1
scaffold_1	spliced_intron	12336858	12337333	-	asmbl_701,asmbl_702,asmbl_703,asmbl_705,asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_711,asmbl_713,asmbl_716	none	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_826,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_831,blat.proc3825148.chain_833,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_841,blat.proc3825148.chain_842	12	blat.proc3825148.chain_825,blat.proc3825148.chain_834,blat.proc3825148.chain_839,blat.proc3825148.chain_840	4
scaffold_7	alt_acceptor	8772264	8772265	+	asmbl_50050,asmbl_50051	none	STRG.9117.1,STRG.9117.3,blat.proc3825168.chain_1644,blat.proc3825168.chain_1645	4	STRG.9117.2	1
scaffold_4	starts_in_intron	16340642	16340642	-	asmbl_43160	none	blat.proc3825150.chain_1269	1	STRG.5202.1,STRG.5202.2	2
scaffold_1	spliced_intron	18033269	18033608	-	asmbl_1079	none	STRG.1269.1,Trinity_GG_616_c0_g1_i2,blat.proc3825148.chain_1180	3	Trinity_GG_616_c0_g1_i1,blat.proc3825148.chain_1179	2
scaffold_19	spliced_intron	12247353	12247482	-	asmbl_22468,asmbl_22469,asmbl_22470,asmbl_22473	none	STRG.22552.1,STRG.22552.2,blat.proc3825158.chain_3307,blat.proc3825158.chain_3309,blat.proc3825158.chain_3311,blat.proc3825158.chain_3313	6	blat.proc3825158.chain_3308,blat.proc3825158.chain_3310	2
scaffold_6	ends_in_intron	5053143	5053143	-	asmbl_48388,asmbl_48389,asmbl_48390,asmbl_48391	none	blat.proc3825150.chain_3641,blat.proc3825150.chain_3643,blat.proc3825150.chain_3645,blat.proc3825150.chain_3647	4	STRG.7486.1	1
scaffold_28	starts_in_intron	2427340	2427340	-	asmbl_38057	none	Trinity_GG_16464_c0_g1_i1,blat.proc3825162.chain_2551	2	STRG.29419.1,Trinity_GG_16464_c0_g1_i2,blat.proc3825162.chain_2552	3
scaffold_17	alt_donor	9485601	9485602	+	asmbl_19092,asmbl_19093,asmbl_19097	none	STRG.20572.1,STRG.20572.3,blat.proc3825174.chain_1445,blat.proc3825174.chain_1446,blat.proc3825174.chain_1449	5	STRG.20572.2,blat.proc3825174.chain_1444,blat.proc3825174.chain_1450	3
scaffold_11	retained_exon	9652909	9652941	-	asmbl_6942,asmbl_6944	none	STRG.13984.1,blat.proc3825154.chain_2513,blat.proc3825154.chain_2514	3	STRG.13984.2	1
scaffold_23	spliced_intron	10909931	10909952	-	asmbl_31171	none	STRG.26293.1	1	STRG.26293.2,STRG.26293.3,Trinity_GG_14677_c0_g1_i1,Trinity_GG_14677_c0_g1_i2,blat.proc3825160.chain_3388	5
scaffold_825	alt_donor	3663	3664	+	asmbl_53684	none	STRG.30482.1	1	STRG.30482.2	1
scaffold_6	starts_in_intron	12628761	12628761	-	asmbl_48839	none	blat.proc3825152.chain_414	1	STRG.8021.1,STRG.8021.2,Trinity_GG_4556_c0_g1_i2,blat.proc3825152.chain_411,blat.proc3825152.chain_412,blat.proc3825152.chain_413	6
scaffold_12	alt_acceptor	11111953	11111954	-	asmbl_8783	none	STRG.15059.2,Trinity_GG_8384_c0_g1_i2,blat.proc3825154.chain_3533	3	STRG.15059.1,blat.proc3825154.chain_3534	2
scaffold_9	skipped_exon	16563815	16566225	-	asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55591	none	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_271,blat.proc3825154.chain_274	6	STRG.11806.3,STRG.11806.4,STRG.11806.5,STRG.11806.6,Trinity_GG_6524_c0_g1_i10,blat.proc3825154.chain_268	6
scaffold_1	spliced_intron	9254163	9254609	+	asmbl_1969	none	STRG.619.4,Trinity_GG_17679_c0_g1_i4,blat.proc3825164.chain_723	3	STRG.619.1,STRG.619.2,Trinity_GG_17679_c0_g1_i2,blat.proc3825164.chain_722	4
scaffold_1	retained_intron	4239169	4239798	+	asmbl_1648	none	blat.proc3825164.chain_402	1	STRG.256.1,blat.proc3825164.chain_404	2
scaffold_322	alt_acceptor	5814	5815	-	asmbl_40969	none	STRG.30280.1	1	STRG.30280.2	1
scaffold_21	retained_exon	3824283	3824342	-	asmbl_27548	none	STRG.23974.4,blat.proc3825160.chain_1118	2	STRG.23974.1,blat.proc3825160.chain_1115,blat.proc3825160.chain_1117	3
scaffold_14	spliced_intron	1069783	1069875	+	asmbl_11791,asmbl_11792,asmbl_11796,asmbl_11798	none	STRG.16766.1,STRG.16766.2,blat.proc3825172.chain_1535,blat.proc3825172.chain_1537	4	blat.proc3825172.chain_1533	1
scaffold_17	retained_intron	10050958	10051155	+	asmbl_19162,asmbl_19164,asmbl_19165	none	STRG.20618.1,Trinity_GG_28608_c0_g1_i4,blat.proc3825174.chain_1499,blat.proc3825174.chain_1500	4	STRG.20618.2,STRG.20618.3,blat.proc3825174.chain_1497	3
scaffold_20	ends_in_intron	5950764	5950764	-	asmbl_25809	none	blat.proc3825160.chain_291	1	STRG.23205.1,blat.proc3825160.chain_293	2
scaffold_14	alternate_exon	12765812	12765941	-	asmbl_13596,asmbl_13604	none	STRG.17591.1,blat.proc3825156.chain_2478,blat.proc3825156.chain_2480	3	STRG.17591.4,blat.proc3825156.chain_2479	2
scaffold_14	ends_in_intron	14504477	14504477	-	asmbl_13688	none	blat.proc3825156.chain_2532	1	STRG.17711.1,blat.proc3825156.chain_2531	2
scaffold_15	starts_in_intron	10770841	10770841	+	asmbl_15468	none	blat.proc3825172.chain_3215	1	STRG.18562.4,blat.proc3825172.chain_3211,blat.proc3825172.chain_3212,blat.proc3825172.chain_3213,blat.proc3825172.chain_3216	5
scaffold_1	alt_acceptor	2130501	2130502	+	asmbl_1534	none	STRG.147.3,blat.proc3825164.chain_257	2	STRG.147.1,STRG.147.2,blat.proc3825164.chain_255,blat.proc3825164.chain_256	4
scaffold_15	alternate_exon	8982907	8984399	+	asmbl_15373	none	STRG.18445.2,blat.proc3825172.chain_3139	2	blat.proc3825172.chain_3141	1
scaffold_3	starts_in_intron	8254403	8254403	+	asmbl_40208	none	Trinity_GG_19231_c0_g1_i1,blat.proc3825164.chain_3650	2	STRG.3402.1,Trinity_GG_19231_c0_g1_i2,blat.proc3825164.chain_3649	3
scaffold_23	starts_in_intron	3454212	3454212	-	asmbl_30796	none	blat.proc3825160.chain_2966	1	STRG.25769.1,blat.proc3825160.chain_2965	2
scaffold_4	alternate_exon	16650240	16661305	+	asmbl_41993	none	blat.proc3825166.chain_1602	1	Trinity_GG_20222_c0_g1_i3,blat.proc3825166.chain_1601	2
scaffold_24	spliced_intron	1945924	1946132	-	asmbl_32755,asmbl_32757	none	STRG.26421.1,STRG.26421.2	2	STRG.26421.3	1
scaffold_9	starts_in_intron	9471976	9471976	-	asmbl_55179,asmbl_55181,asmbl_55185	none	STRG.11310.2,blat.proc3825152.chain_3566,blat.proc3825152.chain_3570	3	STRG.11310.1,STRG.11310.3,blat.proc3825152.chain_3567	3
scaffold_22	alt_donor	6151912	6151913	-	asmbl_29311,asmbl_29312,asmbl_29313	none	STRG.24977.2,STRG.24977.3,blat.proc3825160.chain_2105	3	STRG.24977.1,blat.proc3825160.chain_2106,blat.proc3825160.chain_2107	3
scaffold_4	alt_donor	12629845	12629846	-	asmbl_42937	none	STRG.4902.1,blat.proc3825150.chain_1039	2	STRG.4902.2,STRG.4902.3,blat.proc3825150.chain_1038,blat.proc3825150.chain_1040	4
scaffold_12	retained_exon	15096254	15096945	-	asmbl_9047	none	Trinity_GG_8545_c1_g1_i6,blat.proc3825156.chain_51	2	STRG.15320.2	1
scaffold_20	alternate_exon	9965343	9965583	-	asmbl_26066	none	Trinity_GG_13133_c0_g1_i3,blat.proc3825160.chain_628	2	STRG.23540.2,STRG.23540.4,Trinity_GG_13133_c0_g1_i2,blat.proc3825160.chain_627	4
scaffold_18	spliced_intron	282012	282108	+	asmbl_20286	none	STRG.20984.2	1	STRG.20984.3	1
scaffold_25	starts_in_intron	5694841	5694841	-	asmbl_34274	none	blat.proc3825162.chain_856	1	STRG.27468.1,blat.proc3825162.chain_857,blat.proc3825162.chain_858,blat.proc3825162.chain_859	4
scaffold_2	retained_exon	9190285	9190308	-	asmbl_23359,asmbl_23363,asmbl_23364	none	STRG.2171.1,blat.proc3825148.chain_2197,blat.proc3825148.chain_2199,blat.proc3825148.chain_2200	4	STRG.2171.2,blat.proc3825148.chain_2198,blat.proc3825148.chain_2201,blat.proc3825148.chain_2203	4
scaffold_28	spliced_intron	5391382	5391483	+	asmbl_37583,asmbl_37586,asmbl_37588	none	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868,blat.proc3825178.chain_2869	6	STRG.29687.4	1
scaffold_20	alt_donor	8760834	8760835	-	asmbl_26010	none	STRG.23421.1,blat.proc3825160.chain_529	2	STRG.23421.2	1
scaffold_11	retained_exon	2090878	2090989	+	asmbl_5360,asmbl_5361	none	STRG.13371.1,STRG.13371.3,blat.proc3825170.chain_1927,blat.proc3825170.chain_1929	4	STRG.13371.2,blat.proc3825170.chain_1928	2
scaffold_3	retained_intron	14559144	14559490	-	asmbl_39395	none	STRG.3796.1,Trinity_GG_2099_c0_g1_i2,blat.proc3825148.chain_3731	3	STRG.3796.2,Trinity_GG_2099_c0_g1_i1,blat.proc3825148.chain_3730	3
scaffold_5	alternate_exon	991062	991240	-	asmbl_43805,asmbl_43808	none	STRG.5650.2,blat.proc3825150.chain_1880	2	STRG.5650.1,STRG.5650.3,STRG.5650.4,blat.proc3825150.chain_1881	4
scaffold_6	starts_in_intron	9711398	9711398	-	asmbl_48632	none	STRG.7819.2,blat.proc3825152.chain_189	2	STRG.7819.1	1
scaffold_12	starts_in_intron	9233307	9233307	-	asmbl_8668	none	blat.proc3825154.chain_3449	1	STRG.14939.5,blat.proc3825154.chain_3451,blat.proc3825154.chain_3454,blat.proc3825154.chain_3456	4
scaffold_6	retained_intron	7936991	7937111	-	asmbl_48512	none	blat.proc3825152.chain_70	1	STRG.7676.1,STRG.7676.2,STRG.7676.4,blat.proc3825152.chain_69,blat.proc3825152.chain_71,blat.proc3825152.chain_72,blat.proc3825152.chain_73	7
scaffold_14	alternate_exon	13646344	13646368	-	asmbl_13656	none	STRG.17661.2	1	STRG.17661.1,blat.proc3825156.chain_2501	2
scaffold_1	spliced_intron	12683677	12684002	+	asmbl_2245,asmbl_2248	none	STRG.892.1,STRG.892.2,blat.proc3825164.chain_1038	3	blat.proc3825164.chain_1037,blat.proc3825164.chain_1039,blat.proc3825164.chain_1040	3
scaffold_13	starts_in_intron	5551056	5551056	+	asmbl_10873	none	blat.proc3825172.chain_586	1	STRG.15856.1,blat.proc3825172.chain_587,blat.proc3825172.chain_588	3
scaffold_13	retained_intron	8013982	8014196	+	asmbl_11091	none	Trinity_GG_26119_c0_g1_i3,blat.proc3825172.chain_789	2	STRG.16081.1,STRG.16081.2,blat.proc3825172.chain_787,blat.proc3825172.chain_788	4
scaffold_28	alternate_exon	2653263	2655570	+	asmbl_37394	none	STRG.29457.2,blat.proc3825178.chain_2671	2	blat.proc3825178.chain_2669,blat.proc3825178.chain_2670	2
scaffold_10	starts_in_intron	2900786	2900786	+	asmbl_3015	none	Trinity_GG_24046_c0_g1_i1,blat.proc3825170.chain_855	2	STRG.12111.1	1
scaffold_10	alt_acceptor	2766930	2766931	+	asmbl_3011	none	STRG.12096.2,blat.proc3825170.chain_856	2	STRG.12096.1,blat.proc3825170.chain_857	2
scaffold_16	alternate_exon	6147933	6148988	+	asmbl_16281	none	blat.proc3825174.chain_145	1	STRG.19354.2,STRG.19354.3,blat.proc3825174.chain_143	3
scaffold_3	alt_acceptor	13423924	13423925	-	asmbl_39260	none	STRG.3693.2,blat.proc3825148.chain_3583	2	STRG.3693.1,blat.proc3825148.chain_3584	2
scaffold_28	skipped_exon	3839816	3840769	+	asmbl_37494	none	STRG.29579.1,blat.proc3825178.chain_2778	2	STRG.29579.2,blat.proc3825178.chain_2780	2
scaffold_14	alternate_exon	12825680	12826556	-	asmbl_13615	none	STRG.17598.4,blat.proc3825156.chain_2464	2	STRG.17598.5	1
scaffold_9	retained_intron	11836844	11837012	-	asmbl_55321,asmbl_55322,asmbl_55324	none	STRG.11501.2,STRG.11501.3,blat.proc3825152.chain_3669,blat.proc3825152.chain_3672	4	STRG.11501.1,blat.proc3825152.chain_3671	2
scaffold_1	spliced_intron	18485288	18485991	-	asmbl_1111,asmbl_1115	none	STRG.1298.5,blat.proc3825148.chain_1320	2	STRG.1298.1,STRG.1298.3	2
scaffold_22	alternate_exon	11641430	11641602	-	asmbl_29688	none	STRG.25513.1	1	STRG.25513.3	1
scaffold_11	spliced_intron	3095645	3095846	+	asmbl_5402	none	STRG.13433.2	1	STRG.13433.1	1
scaffold_13	spliced_intron	925797	925912	-	asmbl_9388	none	STRG.15465.1,blat.proc3825156.chain_330	2	blat.proc3825156.chain_331	1
scaffold_15	retained_intron	13324710	13324894	+	asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15636,asmbl_15637	none	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	7	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389	7
scaffold_20	ends_in_intron	11502721	11502721	+	asmbl_27066	none	Trinity_GG_30406_c0_g1_i1,blat.proc3825176.chain_852	2	STRG.23655.1,STRG.23655.2,Trinity_GG_30406_c0_g1_i2,blat.proc3825176.chain_851	4
scaffold_18	spliced_intron	4768861	4769106	+	asmbl_20555	none	STRG.21273.4	1	STRG.21273.1,Trinity_GG_29026_c0_g1_i1,blat.proc3825174.chain_2227	3
scaffold_4	spliced_intron	17471150	17471253	-	asmbl_43269	none	STRG.5333.2,Trinity_GG_2942_c0_g1_i1,blat.proc3825150.chain_1438	3	STRG.5333.1,Trinity_GG_2942_c0_g1_i2,blat.proc3825150.chain_1439	3
scaffold_4	starts_in_intron	5883673	5883673	-	asmbl_42642,asmbl_42645	none	STRG.4480.1,blat.proc3825150.chain_729,blat.proc3825150.chain_730	3	STRG.4480.2,blat.proc3825150.chain_728	2
scaffold_1517	alt_donor	1446	1447	-	asmbl_15962	none	STRG.30614.2	1	STRG.30614.1,blat.proc3825162.chain_3674	2
scaffold_9	alt_acceptor	560242	560243	+	asmbl_53765	none	STRG.10785.2,blat.proc3825168.chain_3318	2	STRG.10785.1,blat.proc3825168.chain_3317	2
scaffold_16	starts_in_intron	6117775	6117775	+	asmbl_16268	none	blat.proc3825174.chain_244	1	STRG.19343.1,blat.proc3825174.chain_239	2
scaffold_1	retained_exon	22372438	22372575	+	asmbl_2687,asmbl_2688	none	STRG.1491.2,STRG.1491.5	2	STRG.1491.1	1
scaffold_1	retained_intron	5740198	5740435	+	asmbl_1777	none	blat.proc3825164.chain_524	1	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528,blat.proc3825164.chain_529,blat.proc3825164.chain_530	7
scaffold_22	alternate_exon	11641500	11641602	-	asmbl_29687,asmbl_29689	none	STRG.25513.2,STRG.25513.4,Trinity_GG_14246_c0_g1_i1,blat.proc3825160.chain_2631	4	STRG.25513.3	1
scaffold_18	retained_intron	13150111	13150230	-	asmbl_20167	none	STRG.21756.2	1	STRG.21756.1	1
scaffold_6	spliced_intron	10546689	10547006	+	asmbl_47288	none	Trinity_GG_21640_c0_g1_i2,blat.proc3825168.chain_342	2	STRG.7891.1,blat.proc3825168.chain_341	2
scaffold_5	retained_intron	18562167	18562393	+	asmbl_46266,asmbl_46267	none	STRG.6987.2,STRG.6987.4,Trinity_GG_21132_c0_g1_i15,blat.proc3825166.chain_3150	4	STRG.6987.1,STRG.6987.3,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i7,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	8
scaffold_3	alternate_exon	8160023	8167060	-	asmbl_39010	none	STRG.3440.1,Trinity_GG_1828_c9_g1_i1,blat.proc3825148.chain_3283	3	Trinity_GG_1828_c12_g1_i1,Trinity_GG_1828_c3_g1_i4,blat.proc3825148.chain_3275,blat.proc3825148.chain_3277,blat.proc3825148.chain_3286	5
scaffold_16	ends_in_intron	8641411	8641411	+	asmbl_16431	none	blat.proc3825174.chain_369	1	STRG.19492.1,STRG.19492.2,STRG.19492.3,blat.proc3825174.chain_368	4
scaffold_12	skipped_exon	7591172	7592710	-	asmbl_8599	none	STRG.14839.1,blat.proc3825154.chain_3348	2	STRG.14839.2,blat.proc3825154.chain_3349	2
scaffold_19	alternate_exon	6138297	6138342	-	asmbl_22190	none	STRG.22139.2	1	STRG.22139.1,blat.proc3825158.chain_2984	2
scaffold_21	retained_intron	7367552	7367674	-	asmbl_27803	none	blat.proc3825160.chain_1408	1	STRG.24259.1,blat.proc3825160.chain_1407,blat.proc3825160.chain_1410	3
scaffold_23	alt_acceptor	8204480	8204481	+	asmbl_31763,asmbl_31766,asmbl_31767	none	STRG.26129.1,blat.proc3825176.chain_3002,blat.proc3825176.chain_3003,blat.proc3825176.chain_3004	4	STRG.26129.2	1
scaffold_12	skipped_exon	10187619	10188436	-	asmbl_8732	none	STRG.14994.2,blat.proc3825154.chain_3517	2	STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3520	3
scaffold_16	retained_intron	14560038	14560115	-	asmbl_17467	none	STRG.19840.2	1	STRG.19840.1,blat.proc3825158.chain_882	2
scaffold_11	ends_in_intron	1889588	1889588	+	asmbl_5346	none	blat.proc3825170.chain_1901	1	STRG.13355.1,blat.proc3825170.chain_1900	2
scaffold_15	ends_in_intron	4968412	4968412	-	asmbl_14174	none	Trinity_GG_10249_c0_g1_i3,blat.proc3825156.chain_3064	2	STRG.18209.2,STRG.18209.5,Trinity_GG_10249_c0_g1_i9,blat.proc3825156.chain_3060	4
scaffold_15	alt_donor	12000365	12000366	-	asmbl_14546	none	STRG.18639.6,Trinity_GG_10485_c0_g1_i6,blat.proc3825156.chain_3529	3	STRG.18639.1,STRG.18639.3,Trinity_GG_10485_c0_g1_i2,Trinity_GG_10485_c0_g1_i3,blat.proc3825156.chain_3531,blat.proc3825156.chain_3534	6
scaffold_5	alternate_exon	1693092	1693202	+	asmbl_45143	none	STRG.5724.2	1	STRG.5724.1,blat.proc3825166.chain_1940	2
scaffold_3	alternate_exon	14352209	14352879	-	asmbl_39366	none	STRG.3782.1,blat.proc3825148.chain_3675	2	STRG.3782.2,Trinity_GG_2079_c0_g1_i1,blat.proc3825148.chain_3674	3
scaffold_22	spliced_intron	5923249	5923359	+	asmbl_30068	none	STRG.24938.1,blat.proc3825176.chain_2045	2	STRG.24938.2,Trinity_GG_31103_c0_g1_i2,blat.proc3825176.chain_2046	3
scaffold_25	alt_acceptor	5827770	5827771	-	asmbl_34287,asmbl_34288,asmbl_34289,asmbl_34290,asmbl_34292,asmbl_34296	none	STRG.27479.1,STRG.27479.2,STRG.27479.3,STRG.27479.4,blat.proc3825162.chain_877,blat.proc3825162.chain_878	6	blat.proc3825162.chain_876	1
scaffold_7	alt_acceptor	2957937	2957938	-	asmbl_50777	none	STRG.8718.2,blat.proc3825152.chain_1181	2	STRG.8718.1,blat.proc3825152.chain_1182	2
scaffold_3	retained_intron	5774678	5774814	-	asmbl_38859,asmbl_38862	none	STRG.3244.2,STRG.3244.3,Trinity_GG_1733_c0_g1_i4,blat.proc3825148.chain_3039	4	STRG.3244.1,STRG.3244.4,blat.proc3825148.chain_3041	3
scaffold_13	spliced_intron	352039	352293	-	asmbl_9300,asmbl_9301,asmbl_9302,asmbl_9304	none	STRG.15440.1,Trinity_GG_8667_c0_g1_i11,Trinity_GG_8667_c0_g1_i6,Trinity_GG_8667_c0_g1_i9,blat.proc3825156.chain_305,blat.proc3825156.chain_307,blat.proc3825156.chain_309,blat.proc3825156.chain_310	8	Trinity_GG_8667_c0_g1_i7,blat.proc3825156.chain_311	2
scaffold_7	alternate_exon	18768060	18772230	-	asmbl_51504,asmbl_51505	none	blat.proc3825152.chain_1977,blat.proc3825152.chain_1978	2	STRG.9694.2,blat.proc3825152.chain_1976	2
scaffold_15	alt_acceptor	12106788	12106789	+	asmbl_15538,asmbl_15539	none	STRG.18668.1,STRG.18668.2	2	blat.proc3825172.chain_3296	1
scaffold_2	alt_donor	6211412	6211413	-	asmbl_23187	none	blat.proc3825148.chain_1933	1	STRG.1987.1,STRG.1987.2,blat.proc3825148.chain_1932	3
scaffold_11	alt_acceptor	5922915	5922916	+	asmbl_5593,asmbl_5594	none	STRG.13663.1,blat.proc3825170.chain_2196,blat.proc3825170.chain_2197	3	STRG.13663.2	1
scaffold_7	retained_intron	15020785	15020865	-	asmbl_51351	none	blat.proc3825152.chain_1866	1	STRG.9519.1,blat.proc3825152.chain_1865	2
scaffold_11	retained_exon	6063857	6063910	+	asmbl_5608	none	blat.proc3825170.chain_2148	1	STRG.13670.1,blat.proc3825170.chain_2149	2
scaffold_23	skipped_exon	1850810	1852793	+	asmbl_31361	none	STRG.25669.2,blat.proc3825176.chain_2626	2	STRG.25669.1	1
scaffold_6	retained_intron	8173890	8174001	-	asmbl_48540,asmbl_48543	none	Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_92,blat.proc3825152.chain_95	3	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_91,blat.proc3825152.chain_93	6
scaffold_10	starts_in_intron	3928980	3928980	-	asmbl_4242	none	STRG.12235.3	1	STRG.12235.1,blat.proc3825154.chain_797,blat.proc3825154.chain_801,blat.proc3825154.chain_802	4
scaffold_12	alt_donor	5089657	5089658	-	asmbl_8482	none	blat.proc3825154.chain_3165	1	STRG.14685.1,blat.proc3825154.chain_3162,blat.proc3825154.chain_3163,blat.proc3825154.chain_3164	4
scaffold_10	spliced_intron	8897219	8897475	-	asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631	none	STRG.12637.1,blat.proc3825154.chain_1264,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	9	Trinity_GG_7072_c0_g1_i21,blat.proc3825154.chain_1270	2
scaffold_18	alternate_exon	198932	204473	+	asmbl_20273	none	STRG.20974.1,blat.proc3825174.chain_1920	2	Trinity_GG_28858_c0_g1_i1,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1919,blat.proc3825174.chain_1923	4
scaffold_7	retained_intron	5840050	5841961	-	asmbl_50891,asmbl_50893	none	STRG.8892.1,blat.proc3825152.chain_1279,blat.proc3825152.chain_1281	3	blat.proc3825152.chain_1280	1
scaffold_11	spliced_intron	14532977	14533569	+	asmbl_6090	none	STRG.14252.2,Trinity_GG_25124_c0_g1_i1,blat.proc3825170.chain_2710	3	STRG.14252.1,Trinity_GG_25124_c0_g1_i4,blat.proc3825170.chain_2708,blat.proc3825170.chain_2709	4
scaffold_27	alt_donor	1609440	1609441	-	asmbl_36768	none	STRG.28650.1	1	Trinity_GG_16047_c1_g1_i1,blat.proc3825162.chain_1918	2
scaffold_1	retained_intron	12334913	12335043	-	asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_705	none	Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_829,blat.proc3825148.chain_837	3	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_831,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	10
scaffold_4	alt_donor	13825472	13825473	-	asmbl_43011,asmbl_43012	none	STRG.5009.1,STRG.5009.2,blat.proc3825150.chain_1167,blat.proc3825150.chain_1168	4	STRG.5009.3	1
scaffold_2	retained_intron	11448324	11448569	-	asmbl_23448	none	STRG.2258.1,Trinity_GG_1266_c0_g1_i1,blat.proc3825148.chain_2286	3	STRG.2258.2,blat.proc3825148.chain_2287	2
scaffold_4	alt_acceptor	17580978	17580979	+	asmbl_42061,asmbl_42064	none	STRG.5347.1,STRG.5347.2	2	STRG.5347.3	1
scaffold_7	alt_acceptor	15031504	15031505	-	asmbl_51353	none	STRG.9526.3	1	STRG.9526.1,STRG.9526.2	2
scaffold_550	alt_acceptor	1307	1308	+	asmbl_46559,asmbl_46561	none	STRG.30372.1,blat.proc3825178.chain_3461	2	STRG.30372.2,blat.proc3825178.chain_3462	2
scaffold_9	alt_acceptor	16282211	16282212	-	asmbl_55565	none	STRG.11778.1,blat.proc3825154.chain_239	2	STRG.11778.3	1
scaffold_6	alternate_exon	13275259	13280140	+	asmbl_47514,asmbl_47516,asmbl_47517	none	STRG.8090.2,STRG.8090.3,STRG.8090.4,blat.proc3825168.chain_518	4	STRG.8090.5,blat.proc3825168.chain_517	2
scaffold_2	skipped_exon	30795	32149	+	asmbl_24061	none	Trinity_GG_18174_c0_g1_i10,blat.proc3825164.chain_1643	2	STRG.1496.1,STRG.1496.3,Trinity_GG_18174_c0_g1_i1,Trinity_GG_18174_c0_g1_i4,blat.proc3825164.chain_1639,blat.proc3825164.chain_1641,blat.proc3825164.chain_1644,blat.proc3825164.chain_1645	8
scaffold_11	starts_in_intron	856306	856306	+	asmbl_5311	none	blat.proc3825170.chain_1862	1	STRG.13285.1,STRG.13285.2,blat.proc3825170.chain_1860,blat.proc3825170.chain_1861,blat.proc3825170.chain_1863	5
scaffold_26	alt_donor	7953062	7953063	-	asmbl_35725	none	STRG.28413.1,blat.proc3825162.chain_1622	2	STRG.28413.2,blat.proc3825162.chain_1623	2
scaffold_26	retained_intron	5486047	5486534	+	asmbl_35001	none	Trinity_GG_32935_c1_g2_i4,blat.proc3825178.chain_1367	2	STRG.28257.4,Trinity_GG_32935_c1_g2_i3,blat.proc3825178.chain_1366	3
scaffold_2	ends_in_intron	4583696	4583696	+	asmbl_24363	none	blat.proc3825164.chain_1975	1	STRG.1886.1,STRG.1886.2,STRG.1886.3	3
scaffold_9	starts_in_intron	6921103	6921103	-	asmbl_55101	none	blat.proc3825152.chain_3450	1	STRG.11207.2,blat.proc3825152.chain_3454,blat.proc3825152.chain_3455	3
scaffold_10	alt_acceptor	979066	979067	-	asmbl_4026	none	STRG.11983.1	1	STRG.11983.2,STRG.11983.3,blat.proc3825154.chain_497	3
scaffold_13	starts_in_intron	8203979	8203979	-	asmbl_9950	none	blat.proc3825156.chain_1003	1	blat.proc3825156.chain_1004	1
scaffold_1	retained_exon	849738	849801	+	asmbl_1418,asmbl_1422	none	STRG.42.2,STRG.42.4,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_127	4	STRG.42.1,STRG.42.3,Trinity_GG_17343_c0_g1_i2,blat.proc3825164.chain_125	4
scaffold_14	alt_donor	10693026	10693027	+	asmbl_12339	none	blat.proc3825172.chain_2156	1	STRG.17422.1,STRG.17422.4,blat.proc3825172.chain_2154	3
scaffold_20	spliced_intron	11678784	11679288	-	asmbl_26179	none	STRG.23672.3,blat.proc3825160.chain_757	2	STRG.23672.2,blat.proc3825160.chain_758,blat.proc3825160.chain_759	3
scaffold_6	ends_in_intron	12636360	12636360	+	asmbl_47427,asmbl_47428	none	STRG.8022.1,STRG.8022.3	2	STRG.8022.2,Trinity_GG_21679_c0_g1_i3,blat.proc3825168.chain_423,blat.proc3825168.chain_424	4
scaffold_7	skipped_exon	17339140	17339667	-	asmbl_51424	none	STRG.9613.4	1	STRG.9613.2,STRG.9613.3	2
scaffold_17	alt_acceptor	10037074	10037075	-	asmbl_18225	none	Trinity_GG_11583_c0_g1_i3,blat.proc3825158.chain_1619	2	Trinity_GG_11583_c0_g1_i1,blat.proc3825158.chain_1618	2
scaffold_9	spliced_intron	11825456	11825553	-	asmbl_55315	none	STRG.11502.1,blat.proc3825152.chain_3634	2	STRG.11502.5,blat.proc3825152.chain_3635	2
scaffold_13	alternate_exon	8803187	8805902	-	asmbl_9987	none	blat.proc3825156.chain_1066	1	blat.proc3825156.chain_1072	1
scaffold_17	spliced_intron	14627370	14627619	-	asmbl_18436,asmbl_18437,asmbl_18438	none	STRG.20931.1,STRG.20931.4,blat.proc3825158.chain_1899	3	blat.proc3825158.chain_1902	1
scaffold_19	alt_donor	12575420	12575421	-	asmbl_22518,asmbl_22520	none	STRG.22584.1,STRG.22584.2,blat.proc3825158.chain_3373	3	STRG.22584.3	1
scaffold_7	alt_acceptor	8772267	8772268	+	asmbl_50052	none	STRG.9117.2	1	STRG.9117.1,STRG.9117.3,blat.proc3825168.chain_1644,blat.proc3825168.chain_1645	4
scaffold_11	retained_intron	9174309	9174475	+	asmbl_5878	none	STRG.13951.1,Trinity_GG_25017_c0_g1_i1,blat.proc3825170.chain_2525	3	STRG.13951.2,Trinity_GG_25017_c0_g1_i2,blat.proc3825170.chain_2524	3
scaffold_17	starts_in_intron	9452763	9452763	+	asmbl_19082,asmbl_19088	none	STRG.20569.2,Trinity_GG_28584_c0_g1_i5,Trinity_GG_28584_c0_g1_i7,blat.proc3825174.chain_1437,blat.proc3825174.chain_1440	5	STRG.20569.1,Trinity_GG_28584_c0_g1_i2,Trinity_GG_28584_c0_g1_i3,Trinity_GG_28584_c0_g1_i4,blat.proc3825174.chain_1439,blat.proc3825174.chain_1442,blat.proc3825174.chain_1443	7
scaffold_10	retained_intron	13521752	13521830	+	asmbl_3611	none	STRG.12949.1,Trinity_GG_24413_c0_g1_i2,blat.proc3825170.chain_1498	3	STRG.12949.2,blat.proc3825170.chain_1497	2
scaffold_15	retained_intron	6794505	6794579	+	asmbl_15264	none	STRG.18296.3	1	STRG.18296.1,STRG.18296.2,Trinity_GG_27307_c0_g1_i1,Trinity_GG_27307_c0_g1_i2,blat.proc3825172.chain_2910,blat.proc3825172.chain_2911	6
scaffold_9	ends_in_intron	5698629	5698629	-	asmbl_55021	none	Trinity_GG_6182_c1_g1_i1,blat.proc3825152.chain_3380	2	STRG.11143.1	1
scaffold_16	retained_intron	318642	318842	+	asmbl_16026	none	blat.proc3825172.chain_3679	1	STRG.19023.2,blat.proc3825172.chain_3680	2
scaffold_13	alternate_exon	895306	895344	-	asmbl_9379	none	Trinity_GG_8651_c0_g1_i8,blat.proc3825156.chain_265	2	STRG.15470.1,STRG.15470.2,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,Trinity_GG_8651_c0_g1_i9,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_269,blat.proc3825156.chain_271,blat.proc3825156.chain_272	13
scaffold_23	spliced_intron	9951383	9951465	-	asmbl_31114,asmbl_31115,asmbl_31116	none	STRG.26203.1,STRG.26203.2,STRG.26203.3,blat.proc3825160.chain_3297	4	blat.proc3825160.chain_3298	1
scaffold_3	retained_intron	3890125	3890210	+	asmbl_39980	none	STRG.3108.2	1	STRG.3108.1,blat.proc3825164.chain_3348,blat.proc3825164.chain_3349	3
scaffold_21	alternate_exon	2949472	2949533	-	asmbl_27493,asmbl_27496	none	STRG.23917.1,blat.proc3825160.chain_985,blat.proc3825160.chain_986	3	STRG.23917.3,blat.proc3825160.chain_988	2
scaffold_19	ends_in_intron	12107854	12107854	-	asmbl_22459	none	Trinity_GG_12482_c0_g1_i6,blat.proc3825158.chain_3190	2	STRG.22539.1,STRG.22539.4,STRG.22539.5,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	5
scaffold_22	alt_acceptor	5936986	5936987	+	asmbl_30074	none	STRG.24944.3	1	STRG.24944.2	1
scaffold_25	retained_intron	9090794	9090907	+	asmbl_33779	none	STRG.27722.1,blat.proc3825178.chain_834	2	STRG.27722.2,blat.proc3825178.chain_835	2
scaffold_5	retained_intron	7710260	7710370	-	asmbl_44187,asmbl_44189	none	STRG.6151.2,blat.proc3825150.chain_2357,blat.proc3825150.chain_2359	3	STRG.6151.1,blat.proc3825150.chain_2358	2
scaffold_8	starts_in_intron	4226915	4226915	-	asmbl_51765	none	blat.proc3825152.chain_2106	1	STRG.9902.1,blat.proc3825152.chain_2105	2
scaffold_15	ends_in_intron	15867904	15867904	+	asmbl_15833	none	Trinity_GG_27679_c0_g1_i1,blat.proc3825172.chain_3547	2	STRG.18969.1,STRG.18969.2,STRG.18969.3,blat.proc3825172.chain_3546	4
scaffold_6	alt_acceptor	12412174	12412175	-	asmbl_48801,asmbl_48805	none	STRG.7996.2,STRG.7996.4,blat.proc3825152.chain_392,blat.proc3825152.chain_393	4	STRG.7996.1,STRG.7996.3,blat.proc3825152.chain_394	3
scaffold_16	alternate_exon	10448835	10448910	+	asmbl_16539	none	blat.proc3825174.chain_489	1	STRG.19614.2,STRG.19614.4,blat.proc3825174.chain_484	3
scaffold_4	alt_acceptor	8989635	8989636	-	asmbl_42799	none	STRG.4718.1,blat.proc3825150.chain_817	2	STRG.4718.3,STRG.4718.4	2
scaffold_26	alt_donor	7487883	7487884	+	asmbl_35120	none	blat.proc3825178.chain_1471	1	STRG.28384.2,blat.proc3825178.chain_1472	2
scaffold_24	alt_acceptor	7350457	7350458	-	asmbl_33028	none	STRG.26790.1,blat.proc3825162.chain_66	2	STRG.26790.2	1
scaffold_11	alt_acceptor	9832312	9832313	+	asmbl_5906,asmbl_5909,asmbl_5913	none	STRG.14008.1,STRG.14008.2,blat.proc3825170.chain_2556,blat.proc3825170.chain_2557,blat.proc3825170.chain_2565	5	STRG.14008.4,Trinity_GG_25038_c0_g1_i10,blat.proc3825170.chain_2563	3
scaffold_22	alt_acceptor	498163	498164	+	asmbl_29858	none	STRG.24697.1	1	STRG.24697.3	1
scaffold_3	alt_donor	19406807	19406808	-	asmbl_39647,asmbl_39648,asmbl_39649,asmbl_39650,asmbl_39652,asmbl_39653	none	STRG.4086.1,STRG.4086.3,STRG.4086.4,STRG.4086.5,blat.proc3825150.chain_250,blat.proc3825150.chain_251,blat.proc3825150.chain_252,blat.proc3825150.chain_253	8	STRG.4086.2	1
scaffold_25	retained_intron	3738082	3738200	-	asmbl_34153	none	blat.proc3825162.chain_680	1	STRG.27326.1,blat.proc3825162.chain_681	2
scaffold_4	skipped_exon	13114475	13115627	-	asmbl_42972,asmbl_42973	none	STRG.4950.1,blat.proc3825150.chain_1128,blat.proc3825150.chain_1130	3	STRG.4950.2,STRG.4950.3,blat.proc3825150.chain_1129	3
scaffold_5	retained_intron	16519694	16519798	-	asmbl_44751	none	Trinity_GG_3836_c0_g2_i1,blat.proc3825150.chain_3018	2	STRG.6842.1,STRG.6842.2,STRG.6842.4,blat.proc3825150.chain_3015,blat.proc3825150.chain_3017	5
scaffold_14	retained_intron	7216560	7216831	+	asmbl_12134,asmbl_12136	none	Trinity_GG_26721_c0_g1_i3,blat.proc3825172.chain_1868,blat.proc3825172.chain_1869	3	STRG.17156.1,blat.proc3825172.chain_1870,blat.proc3825172.chain_1871	3
scaffold_8	skipped_exon	3489917	3490757	+	asmbl_52768	none	STRG.9846.1,blat.proc3825168.chain_2396	2	STRG.9846.2,blat.proc3825168.chain_2395	2
scaffold_7	starts_in_intron	8334612	8334612	-	asmbl_51008,asmbl_51011	none	STRG.9069.3,blat.proc3825152.chain_1389,blat.proc3825152.chain_1393	3	STRG.9069.1,Trinity_GG_5079_c0_g1_i10,blat.proc3825152.chain_1386,blat.proc3825152.chain_1387,blat.proc3825152.chain_1390	5
scaffold_12	alt_acceptor	26480	26481	-	asmbl_8261,asmbl_8262	none	STRG.14411.1,STRG.14411.2,blat.proc3825154.chain_2930,blat.proc3825154.chain_2931	4	STRG.14411.3	1
scaffold_8	ends_in_intron	3218427	3218427	+	asmbl_52749	none	blat.proc3825168.chain_2378	1	STRG.9833.2,STRG.9833.4,Trinity_GG_22786_c1_g1_i2,blat.proc3825168.chain_2377	4
scaffold_19	retained_exon	3557631	3557817	+	asmbl_21326,asmbl_21327,asmbl_21328,asmbl_21331	none	STRG.22045.1,STRG.22045.2,STRG.22045.3	3	STRG.22045.4	1
scaffold_6	retained_intron	4535550	4536418	-	asmbl_48334,asmbl_48335	none	STRG.7434.3,STRG.7434.4,Trinity_GG_4189_c0_g1_i1,blat.proc3825150.chain_3582	4	STRG.7434.1,blat.proc3825150.chain_3583	2
scaffold_21	retained_intron	405731	406307	-	asmbl_27310,asmbl_27314,asmbl_27315,asmbl_27316	none	STRG.23739.1,Trinity_GG_13230_c0_g1_i1,Trinity_GG_13230_c0_g1_i3,Trinity_GG_13230_c0_g1_i5,Trinity_GG_13230_c0_g1_i6,blat.proc3825160.chain_864,blat.proc3825160.chain_866,blat.proc3825160.chain_867,blat.proc3825160.chain_868	9	Trinity_GG_13230_c0_g1_i4,blat.proc3825160.chain_865	2
scaffold_3	retained_intron	14187141	14189188	-	asmbl_39327,asmbl_39331,asmbl_39333	none	STRG.3761.1,STRG.3761.3,STRG.3761.5,Trinity_GG_2073_c0_g1_i5,blat.proc3825148.chain_3667	5	STRG.3761.2,blat.proc3825148.chain_3664,blat.proc3825148.chain_3666,blat.proc3825148.chain_3668	4
scaffold_7	alt_acceptor	8711881	8711882	-	asmbl_51032	none	STRG.9112.2,blat.proc3825152.chain_1504	2	STRG.9112.1	1
scaffold_27	ends_in_intron	635014	635014	-	asmbl_36708,asmbl_36709	none	blat.proc3825162.chain_1841	1	STRG.28585.1,blat.proc3825162.chain_1840	2
scaffold_14	alternate_exon	2380191	2380265	-	asmbl_12943	none	STRG.16854.10	1	STRG.16854.2	1
scaffold_10	retained_intron	10283708	10283975	-	asmbl_4712	none	STRG.12719.3,Trinity_GG_7121_c0_g1_i1,blat.proc3825154.chain_1346	3	blat.proc3825154.chain_1341	1
scaffold_3	alternate_exon	6036642	6050805	-	asmbl_38879,asmbl_38880	none	STRG.3259.1,STRG.3259.3,blat.proc3825148.chain_3088	3	STRG.3259.5,Trinity_GG_1777_c0_g2_i1,blat.proc3825148.chain_3160	3
scaffold_3	spliced_intron	14187141	14189176	-	asmbl_39332	none	STRG.3761.4	1	STRG.3761.1,STRG.3761.3,STRG.3761.5,Trinity_GG_2073_c0_g1_i5,blat.proc3825148.chain_3667	5
scaffold_10	spliced_intron	8897245	8897475	-	asmbl_4626,asmbl_4632	none	blat.proc3825154.chain_1262,blat.proc3825154.chain_1272	2	Trinity_GG_7072_c0_g1_i21,blat.proc3825154.chain_1270	2
scaffold_27	alternate_exon	9430296	9434124	-	asmbl_37139	none	STRG.29189.1,blat.proc3825162.chain_2345	2	STRG.29189.4,Trinity_GG_16335_c0_g1_i3,blat.proc3825162.chain_2346	3
scaffold_13	alternate_exon	7528194	7528253	-	asmbl_9896	none	STRG.16048.3,Trinity_GG_9022_c0_g1_i3,blat.proc3825156.chain_945	3	STRG.16048.1,STRG.16048.2,Trinity_GG_9022_c0_g1_i1,Trinity_GG_9022_c0_g1_i4,blat.proc3825156.chain_946,blat.proc3825156.chain_947	6
scaffold_2	spliced_intron	3079174	3079230	+	asmbl_24270	none	STRG.1752.1	1	Trinity_GG_18268_c0_g1_i1,blat.proc3825164.chain_1847	2
scaffold_9	alt_acceptor	15591058	15591059	+	asmbl_54581	none	blat.proc3825170.chain_532	1	STRG.11750.1,STRG.11750.2,blat.proc3825170.chain_530,blat.proc3825170.chain_531,blat.proc3825170.chain_533	5
scaffold_3	retained_intron	6183517	6183564	-	asmbl_38916,asmbl_38917	none	blat.proc3825148.chain_3121,blat.proc3825148.chain_3123	2	STRG.3266.5	1
scaffold_16	retained_exon	6144210	6144351	+	asmbl_16278,asmbl_16279,asmbl_16280,asmbl_16281	none	STRG.19354.2,blat.proc3825174.chain_141,blat.proc3825174.chain_143,blat.proc3825174.chain_144,blat.proc3825174.chain_145	5	STRG.19354.1,STRG.19354.3	2
scaffold_1	retained_intron	17725231	17725595	+	asmbl_2529,asmbl_2530,asmbl_2531	none	STRG.1244.2,Trinity_GG_18025_c0_g1_i1,Trinity_GG_18025_c0_g1_i3,blat.proc3825164.chain_1364,blat.proc3825164.chain_1365	5	STRG.1244.1,Trinity_GG_18025_c0_g1_i2,blat.proc3825164.chain_1366	3
scaffold_3	spliced_intron	9516758	9517928	+	asmbl_40226,asmbl_40227	none	STRG.3436.1,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3676,blat.proc3825164.chain_3678	5	STRG.3436.2,Trinity_GG_19245_c0_g1_i2,blat.proc3825164.chain_3674,blat.proc3825164.chain_3677	4
scaffold_9	starts_in_intron	11466709	11466709	-	asmbl_55291	none	STRG.11462.2	1	STRG.11462.1	1
scaffold_26	skipped_exon	4332683	4333629	-	asmbl_35546	none	STRG.28149.1	1	STRG.28149.4	1
scaffold_16	retained_intron	4095539	4095747	+	asmbl_16176	none	Trinity_GG_27809_c0_g1_i8	1	STRG.19226.1,STRG.19226.2	2
scaffold_11	spliced_intron	15637023	15637151	+	asmbl_6120	none	STRG.14298.1,blat.proc3825170.chain_2828	2	STRG.14298.2	1
scaffold_25	alt_donor	4454636	4454637	-	asmbl_34189	none	STRG.27376.3	1	STRG.27376.2	1
scaffold_27	alt_donor	2548521	2548522	+	asmbl_36093	none	STRG.28732.3	1	STRG.28732.1	1
scaffold_15	alt_acceptor	15447483	15447484	+	asmbl_15786,asmbl_15790,asmbl_15793,asmbl_15794	none	STRG.18935.1,Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i4,Trinity_GG_27706_c0_g1_i5,blat.proc3825172.chain_3619,blat.proc3825172.chain_3620,blat.proc3825172.chain_3624,blat.proc3825172.chain_3626	8	STRG.18935.2	1
scaffold_11	alternate_exon	577347	579502	+	asmbl_5291	none	STRG.13273.1	1	STRG.13273.2	1
scaffold_27	retained_intron	1419227	1419252	+	asmbl_36002,asmbl_36004	none	STRG.28637.3,Trinity_GG_33168_c0_g1_i2	2	STRG.28637.1,STRG.28637.2	2
scaffold_9	alt_donor	16628024	16628025	-	asmbl_55598,asmbl_55599	none	STRG.11802.3,STRG.11802.4	2	STRG.11802.1,STRG.11802.2,blat.proc3825154.chain_260	3
scaffold_20	skipped_exon	7861676	7863975	-	asmbl_25932,asmbl_25934	none	STRG.23336.2,blat.proc3825160.chain_418	2	STRG.23336.1,blat.proc3825160.chain_415,blat.proc3825160.chain_416	3
scaffold_5	retained_intron	10315083	10315200	+	asmbl_45676,asmbl_45677	none	Trinity_GG_20769_c0_g1_i1,Trinity_GG_20769_c0_g1_i2,blat.proc3825166.chain_2551,blat.proc3825166.chain_2552	4	STRG.6331.1,blat.proc3825166.chain_2553	2
scaffold_5	alternate_exon	12544007	12545112	-	asmbl_44463,asmbl_44464	none	STRG.6499.1,STRG.6499.3,Trinity_GG_3649_c1_g1_i1,blat.proc3825150.chain_2684,blat.proc3825150.chain_2685	5	STRG.6499.2,blat.proc3825150.chain_2683	2
scaffold_5	starts_in_intron	10170430	10170430	+	asmbl_45665	none	blat.proc3825166.chain_2511	1	STRG.6320.1,blat.proc3825166.chain_2512	2
scaffold_25	ends_in_intron	5695336	5695336	-	asmbl_34278	none	blat.proc3825162.chain_855	1	STRG.27468.1,blat.proc3825162.chain_857,blat.proc3825162.chain_858	3
scaffold_8	ends_in_intron	4889032	4889032	+	asmbl_52876	none	blat.proc3825168.chain_2420	1	STRG.9956.1,blat.proc3825168.chain_2419,blat.proc3825168.chain_2423	3
scaffold_9	alt_acceptor	67094	67095	+	asmbl_53745	none	blat.proc3825168.chain_3292	1	STRG.10765.1,STRG.10765.2	2
scaffold_24	alternate_exon	10484203	10484290	+	asmbl_32571,asmbl_32575,asmbl_32576,asmbl_32577	none	STRG.27019.1,STRG.27019.2,Trinity_GG_32229_c1_g1_i2,Trinity_GG_32229_c1_g1_i3,Trinity_GG_32229_c1_g1_i8,blat.proc3825178.chain_199,blat.proc3825178.chain_201,blat.proc3825178.chain_203	8	STRG.27019.3,Trinity_GG_32229_c1_g1_i4,Trinity_GG_32229_c1_g1_i5,blat.proc3825178.chain_198,blat.proc3825178.chain_202	5
scaffold_14	alt_donor	12628884	12628885	-	asmbl_13586,asmbl_13588	none	STRG.17582.5,blat.proc3825156.chain_2417	2	STRG.17582.1,STRG.17582.2,STRG.17582.3,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2420,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	10
scaffold_9	starts_in_intron	6867408	6867408	-	asmbl_55082	none	blat.proc3825152.chain_3341	1	STRG.11198.1,blat.proc3825152.chain_3340,blat.proc3825152.chain_3343	3
scaffold_3	skipped_exon	14513575	14514227	-	asmbl_39387	none	STRG.3791.1	1	STRG.3791.2,STRG.3791.3,Trinity_GG_2101_c0_g1_i1,blat.proc3825148.chain_3738	4
scaffold_3	alt_acceptor	17845778	17845779	+	asmbl_40705	none	STRG.4004.1,blat.proc3825166.chain_497	2	STRG.4004.2,STRG.4004.3,blat.proc3825166.chain_495	3
scaffold_21	starts_in_intron	1758796	1758796	-	asmbl_27421	none	STRG.23823.1,blat.proc3825160.chain_961	2	STRG.23823.2,blat.proc3825160.chain_963	2
scaffold_1	alt_acceptor	12174681	12174682	+	asmbl_2190,asmbl_2192	none	STRG.839.2,STRG.839.4,blat.proc3825164.chain_1012,blat.proc3825164.chain_1014	4	STRG.839.1,STRG.839.3,blat.proc3825164.chain_1013,blat.proc3825164.chain_1016	4
scaffold_12	retained_intron	6943917	6944472	-	asmbl_8546	none	Trinity_GG_8221_c0_g1_i4,Trinity_GG_8241_c0_g1_i3,blat.proc3825154.chain_3245	3	STRG.14763.1,STRG.14763.2,blat.proc3825154.chain_3246	3
scaffold_11	alt_donor	8044030	8044031	-	asmbl_6820	none	STRG.13810.1,blat.proc3825154.chain_2386	2	STRG.13810.2	1
scaffold_1	alternate_exon	13884427	13884636	-	asmbl_858	none	blat.proc3825148.chain_1007	1	STRG.996.2,STRG.996.4,blat.proc3825148.chain_1005	3
scaffold_15	alternate_exon	15160412	15160733	+	asmbl_15721	none	STRG.18906.5	1	blat.proc3825172.chain_3439,blat.proc3825172.chain_3440	2
scaffold_2	alternate_exon	15509288	15509647	-	asmbl_23638	none	blat.proc3825148.chain_2501	1	blat.proc3825148.chain_2504	1
scaffold_26	retained_intron	5043870	5044023	+	asmbl_34937	none	blat.proc3825176.chain_2465,blat.proc3825178.chain_1166	2	STRG.28240.1,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1169,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180	10
scaffold_11	retained_intron	13252736	13252829	-	asmbl_7122,asmbl_7127,asmbl_7128	none	STRG.14198.2,STRG.14198.4,blat.proc3825154.chain_2767,blat.proc3825154.chain_2773	4	STRG.14198.1,STRG.14198.3,blat.proc3825154.chain_2769,blat.proc3825154.chain_2770,blat.proc3825154.chain_2771,blat.proc3825154.chain_2772	6
scaffold_18	starts_in_intron	9165413	9165413	+	asmbl_20877	none	Trinity_GG_29221_c0_g1_i3	1	STRG.21560.1,Trinity_GG_29221_c0_g1_i1,Trinity_GG_29221_c0_g1_i2,blat.proc3825174.chain_2592,blat.proc3825174.chain_2593	5
scaffold_3	alternate_exon	12040918	12041000	-	asmbl_39201,asmbl_39202	none	STRG.3626.3,Trinity_GG_1980_c0_g1_i2,blat.proc3825148.chain_3501	3	STRG.3626.1,STRG.3626.2,blat.proc3825148.chain_3499,blat.proc3825148.chain_3500	4
scaffold_17	alt_donor	10067475	10067476	+	asmbl_19170,asmbl_19171	none	STRG.20631.2,Trinity_GG_28612_c0_g1_i4,blat.proc3825174.chain_1514	3	STRG.20631.1,Trinity_GG_28612_c0_g1_i2,blat.proc3825174.chain_1515	3
scaffold_13	alt_acceptor	11945713	11945714	-	asmbl_10113	none	STRG.16330.1,Trinity_GG_9149_c0_g1_i3,blat.proc3825156.chain_1197	3	STRG.16330.2,Trinity_GG_9149_c0_g1_i1,blat.proc3825156.chain_1198,blat.proc3825156.chain_1199	4
scaffold_8	starts_in_intron	12413153	12413153	+	asmbl_53310	none	Trinity_GG_23094_c0_g1_i2,blat.proc3825168.chain_2955	2	STRG.10430.1,STRG.10430.2,STRG.10430.3,Trinity_GG_23094_c0_g1_i1,blat.proc3825168.chain_2954	5
scaffold_15	retained_intron	14678979	14679166	+	asmbl_15700	none	STRG.18883.1,Trinity_GG_27659_c0_g1_i2,blat.proc3825172.chain_3494	3	STRG.18883.2,Trinity_GG_27659_c0_g1_i1,blat.proc3825172.chain_3495	3
scaffold_4	alt_donor	5830104	5830105	+	asmbl_41372,asmbl_41374	none	STRG.4475.2,STRG.4475.3	2	STRG.4475.1	1
scaffold_3	alt_acceptor	17364750	17364751	-	asmbl_39547,asmbl_39548,asmbl_39551,asmbl_39552,asmbl_39554,asmbl_39555	none	STRG.3971.1,STRG.3971.4,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_179,blat.proc3825150.chain_181,blat.proc3825150.chain_182	7	STRG.3971.2,blat.proc3825150.chain_184,blat.proc3825150.chain_185	3
scaffold_7	alt_donor	3954962	3954963	-	asmbl_50829,asmbl_50833,asmbl_50835,asmbl_50836	none	STRG.8794.1,blat.proc3825152.chain_1227,blat.proc3825152.chain_1228,blat.proc3825152.chain_1230,blat.proc3825152.chain_1231	5	STRG.8794.2,blat.proc3825152.chain_1226,blat.proc3825152.chain_1232,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235,blat.proc3825152.chain_1236	6
scaffold_19	alt_acceptor	724706	724707	+	asmbl_21203	none	STRG.21857.3	1	STRG.21857.1,STRG.21857.2,STRG.21857.4	3
scaffold_2	spliced_intron	17234631	17234740	-	asmbl_23718	none	STRG.2621.2	1	STRG.2621.1,Trinity_GG_1439_c1_g1_i1,blat.proc3825148.chain_2578	3
scaffold_4	alternate_exon	16133518	16133580	-	asmbl_43142	none	STRG.5184.4,blat.proc3825150.chain_1340	2	STRG.5184.3	1
scaffold_2	retained_intron	20429623	20429784	-	asmbl_23904	none	blat.proc3825148.chain_2783	1	STRG.2882.1,blat.proc3825148.chain_2782	2
scaffold_22	alt_acceptor	4873840	4873841	-	asmbl_29281	none	STRG.24908.3,blat.proc3825160.chain_2014	2	STRG.24908.1,STRG.24908.2,blat.proc3825160.chain_2012,blat.proc3825160.chain_2013	4
scaffold_8	alt_acceptor	16499327	16499328	-	asmbl_52403,asmbl_52404,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52419,asmbl_52421	none	STRG.10629.3,STRG.10629.4,blat.proc3825152.chain_2928,blat.proc3825152.chain_2932,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2941	7	STRG.10629.5	1
scaffold_8	retained_exon	11850090	11850110	+	asmbl_53282	none	blat.proc3825168.chain_3016	1	STRG.10390.3,STRG.10390.5,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022	4
scaffold_19	starts_in_intron	9487919	9487919	-	asmbl_22333	none	STRG.22382.2,blat.proc3825158.chain_3166	2	STRG.22382.1,blat.proc3825158.chain_3167,blat.proc3825158.chain_3168	3
scaffold_13	alt_acceptor	5381906	5381907	+	asmbl_10844	none	STRG.15834.2	1	STRG.15834.1,blat.proc3825172.chain_565	2
scaffold_12	spliced_intron	10187619	10187770	-	asmbl_8733	none	STRG.14994.3,blat.proc3825154.chain_3520	2	blat.proc3825154.chain_3519	1
scaffold_10	skipped_exon	5009911	5010561	-	asmbl_4332	none	STRG.12326.2,blat.proc3825154.chain_849	2	blat.proc3825154.chain_848	1
scaffold_6	starts_in_intron	14077798	14077798	+	asmbl_47571	none	STRG.8166.2	1	STRG.8166.1,blat.proc3825168.chain_620,blat.proc3825168.chain_621	3
scaffold_5	starts_in_intron	2535767	2535767	+	asmbl_45173	none	blat.proc3825166.chain_2005	1	STRG.5779.1,blat.proc3825166.chain_2002,blat.proc3825166.chain_2003	3
scaffold_3	starts_in_intron	6652610	6652610	+	asmbl_40099	none	Trinity_GG_19166_c0_g1_i1,blat.proc3825164.chain_3533	2	STRG.3287.1,STRG.3287.2,blat.proc3825164.chain_3534	3
scaffold_9	alt_acceptor	11019801	11019802	-	asmbl_55264,asmbl_55266	none	STRG.11409.1,blat.proc3825152.chain_3516,blat.proc3825152.chain_3518	3	STRG.11409.2,blat.proc3825152.chain_3517	2
scaffold_11	alt_acceptor	4730714	4730715	+	asmbl_5505	none	STRG.13559.1,blat.proc3825170.chain_2096	2	blat.proc3825170.chain_2097	1
scaffold_9	alt_acceptor	15212303	15212304	-	asmbl_55511,asmbl_55512	none	STRG.11725.1,STRG.11725.2,blat.proc3825154.chain_190,blat.proc3825154.chain_191	4	STRG.11725.3	1
scaffold_10	starts_in_intron	15939398	15939398	+	asmbl_3700	none	Trinity_GG_24526_c0_g1_i2,blat.proc3825170.chain_1689	2	STRG.13083.1,blat.proc3825170.chain_1688	2
scaffold_6	alt_donor	3287989	3287990	-	asmbl_48236,asmbl_48237	none	STRG.7334.1,STRG.7334.3	2	STRG.7334.2	1
scaffold_26	starts_in_intron	8586727	8586727	-	asmbl_35735	none	blat.proc3825162.chain_1626	1	STRG.28448.1,STRG.28448.2,Trinity_GG_15890_c0_g1_i1,blat.proc3825162.chain_1628	4
scaffold_13	spliced_intron	3747652	3747803	+	asmbl_10741,asmbl_10743,asmbl_10744	none	STRG.15702.1,STRG.15702.2,Trinity_GG_25936_c0_g1_i1,blat.proc3825172.chain_434	4	Trinity_GG_25936_c0_g1_i4,blat.proc3825172.chain_435	2
scaffold_6	starts_in_intron	11556860	11556860	-	asmbl_48763	none	blat.proc3825152.chain_349	1	STRG.7952.1,STRG.7952.2,STRG.7952.3,blat.proc3825152.chain_350,blat.proc3825152.chain_351	5
scaffold_6	alternate_exon	10138355	10138487	-	asmbl_48655	none	STRG.7845.1,blat.proc3825152.chain_225	2	STRG.7845.2,STRG.7845.3,Trinity_GG_4435_c1_g1_i1,blat.proc3825152.chain_226	4
scaffold_6	starts_in_intron	128383	128383	-	asmbl_48022	none	blat.proc3825150.chain_3188	1	STRG.7076.1,blat.proc3825150.chain_3189	2
scaffold_11	retained_intron	13593204	13593300	-	asmbl_7147,asmbl_7149	none	STRG.14216.1,Trinity_GG_7952_c0_g1_i2,blat.proc3825154.chain_2764,blat.proc3825154.chain_2765	4	blat.proc3825154.chain_2763	1
scaffold_7	skipped_exon	8171087	8173613	+	asmbl_49960	none	STRG.9049.1,blat.proc3825168.chain_1534	2	STRG.9049.2,blat.proc3825168.chain_1535	2
scaffold_16	ends_in_intron	13018484	13018484	-	asmbl_17400	none	Trinity_GG_11033_c0_g1_i1,blat.proc3825158.chain_753	2	STRG.19763.2	1
scaffold_12	alt_acceptor	7661359	7661360	+	asmbl_7783	none	STRG.14851.1	1	STRG.14851.2,blat.proc3825170.chain_3403,blat.proc3825170.chain_3405,blat.proc3825170.chain_3406	4
scaffold_12	retained_intron	9236297	9236367	-	asmbl_8662,asmbl_8663,asmbl_8671	none	STRG.14939.5,blat.proc3825154.chain_3447,blat.proc3825154.chain_3455,blat.proc3825154.chain_3456	4	STRG.14939.3,blat.proc3825154.chain_3451	2
scaffold_25	alt_acceptor	443567	443568	+	asmbl_33334	none	STRG.27092.1	1	STRG.27092.2	1
scaffold_19	ends_in_intron	2648552	2648552	+	asmbl_21266	none	Trinity_GG_29456_c0_g1_i1,blat.proc3825174.chain_2991	2	STRG.21952.1,Trinity_GG_29456_c0_g1_i4,blat.proc3825174.chain_2989,blat.proc3825174.chain_2990,blat.proc3825174.chain_2992	5
scaffold_7	spliced_intron	3957526	3957770	-	asmbl_50840	none	STRG.8789.1,blat.proc3825152.chain_1271	2	Trinity_GG_5022_c1_g1_i1,blat.proc3825152.chain_1272	2
scaffold_10	starts_in_intron	12729843	12729843	-	asmbl_4820	none	blat.proc3825154.chain_1495	1	blat.proc3825154.chain_1494	1
scaffold_20	spliced_intron	11547068	11547149	-	asmbl_26153	none	STRG.23661.1,blat.proc3825160.chain_737	2	Trinity_GG_13177_c0_g1_i3,blat.proc3825160.chain_735	2
scaffold_4	starts_in_intron	17030943	17030943	+	asmbl_42022	none	Trinity_GG_20244_c0_g1_i5,blat.proc3825166.chain_1646	2	STRG.5301.2,STRG.5301.3,blat.proc3825166.chain_1648,blat.proc3825166.chain_1650	4
scaffold_5	alt_donor	15716023	15716024	-	asmbl_44719	none	blat.proc3825150.chain_2950	1	STRG.6762.1	1
scaffold_10	alt_acceptor	8907717	8907718	+	asmbl_3335,asmbl_3337	none	STRG.12636.1,blat.proc3825170.chain_1225,blat.proc3825170.chain_1226	3	STRG.12636.2	1
scaffold_26	ends_in_intron	10119321	10119321	-	asmbl_35819,asmbl_35820	none	Trinity_GG_15946_c0_g1_i10,Trinity_GG_15946_c0_g1_i11,blat.proc3825162.chain_1711,blat.proc3825162.chain_1714	4	STRG.28530.1,STRG.28530.2,Trinity_GG_15946_c0_g1_i13,Trinity_GG_15946_c0_g1_i3,Trinity_GG_15946_c0_g1_i5,Trinity_GG_15946_c0_g1_i8,blat.proc3825162.chain_1709,blat.proc3825162.chain_1710,blat.proc3825162.chain_1712,blat.proc3825162.chain_1715	10
scaffold_16	starts_in_intron	4092404	4092404	+	asmbl_16174	none	STRG.19226.2	1	STRG.19226.1	1
scaffold_21	retained_intron	473831	473938	+	asmbl_28268	none	blat.proc3825176.chain_916	1	STRG.23742.1,Trinity_GG_30441_c0_g1_i2,blat.proc3825176.chain_915,blat.proc3825176.chain_917	4
scaffold_15	alt_acceptor	4786838	4786839	-	asmbl_14160	none	STRG.18195.1	1	STRG.18195.2,blat.proc3825156.chain_3029	2
scaffold_18	alt_donor	7223696	7223697	+	asmbl_20722,asmbl_20725	none	STRG.21429.2,STRG.21429.3,blat.proc3825174.chain_2443	3	STRG.21429.1,blat.proc3825174.chain_2444	2
scaffold_26	alt_acceptor	4470414	4470415	+	asmbl_34914	none	blat.proc3825178.chain_1247	1	STRG.28157.1,blat.proc3825178.chain_1249	2
scaffold_11	alternate_exon	3715674	3715820	-	asmbl_6565	none	STRG.13494.1,Trinity_GG_7555_c0_g2_i4	2	STRG.13494.2,blat.proc3825154.chain_2058	2
scaffold_3	ends_in_intron	3750826	3750826	+	asmbl_39972	none	blat.proc3825164.chain_3339	1	STRG.3102.1,blat.proc3825164.chain_3340	2
scaffold_25	spliced_intron	8705312	8706427	+	asmbl_33757	none	blat.proc3825178.chain_769	1	STRG.27702.2,Trinity_GG_32580_c0_g1_i5,blat.proc3825178.chain_764,blat.proc3825178.chain_770,blat.proc3825178.chain_771	5
scaffold_2	spliced_intron	15894798	15894963	+	asmbl_25084	none	STRG.2534.2	1	STRG.2534.1,Trinity_GG_18750_c0_g1_i1,blat.proc3825164.chain_2823	3
scaffold_8	alternate_exon	11743765	11744276	-	asmbl_52162	none	STRG.10376.1,blat.proc3825152.chain_2544	2	Trinity_GG_5730_c0_g2_i1,blat.proc3825152.chain_2545	2
scaffold_7	spliced_intron	8296441	8297094	-	asmbl_50993	none	STRG.9066.3,blat.proc3825152.chain_1453	2	STRG.9066.2,Trinity_GG_5116_c0_g1_i4,blat.proc3825152.chain_1452,blat.proc3825152.chain_1455	4
scaffold_26	retained_exon	1994850	1994934	+	asmbl_34728	none	STRG.27942.2	1	STRG.27942.1	1
scaffold_5	alt_acceptor	3638364	3638365	+	asmbl_45233	none	STRG.5839.1,blat.proc3825166.chain_2057	2	STRG.5839.2,blat.proc3825166.chain_2058	2
scaffold_18	spliced_intron	7653749	7654074	+	asmbl_20759	none	STRG.21465.1,Trinity_GG_29173_c1_g1_i2,blat.proc3825174.chain_2503	3	Trinity_GG_29173_c1_g1_i1,blat.proc3825174.chain_2504	2
scaffold_5	retained_exon	9692756	9692987	+	asmbl_45631	none	STRG.6292.1,blat.proc3825166.chain_2489	2	STRG.6292.2	1
scaffold_9	alternate_exon	3694228	3694318	+	asmbl_53916	none	STRG.10978.2	1	STRG.10978.1	1
scaffold_23	skipped_exon	7661718	7664117	+	asmbl_31708	none	blat.proc3825176.chain_2990	1	blat.proc3825176.chain_2988	1
scaffold_13	retained_intron	4458969	4459061	+	asmbl_10798	none	Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_512	2	STRG.15770.1,STRG.15770.2,STRG.15770.3,STRG.15770.4,Trinity_GG_25976_c0_g1_i2,blat.proc3825172.chain_508,blat.proc3825172.chain_509,blat.proc3825172.chain_511	8
scaffold_22	skipped_exon	9718010	9720833	+	asmbl_30313	none	STRG.25308.1,blat.proc3825176.chain_2309	2	STRG.25308.2,STRG.25308.3,STRG.25308.4	3
scaffold_28	alt_donor	3821693	3821694	-	asmbl_38174,asmbl_38176	none	STRG.29582.3,blat.proc3825162.chain_2743	2	STRG.29582.1,blat.proc3825162.chain_2742,blat.proc3825162.chain_2745	3
scaffold_27	spliced_intron	6196600	6196958	+	asmbl_36378,asmbl_36380,asmbl_36383	none	STRG.29014.1,STRG.29014.4,Trinity_GG_33374_c0_g1_i2,blat.proc3825178.chain_2228	4	blat.proc3825178.chain_2229	1
scaffold_28	spliced_intron	295538	295617	+	asmbl_37267,asmbl_37268,asmbl_37269,asmbl_37270	none	STRG.29263.1,STRG.29263.2,STRG.29263.3,blat.proc3825178.chain_2488,blat.proc3825178.chain_2490,blat.proc3825178.chain_2492	6	blat.proc3825178.chain_2489	1
scaffold_11	alt_acceptor	2283139	2283140	-	asmbl_6490	none	STRG.13385.1,blat.proc3825154.chain_1969	2	STRG.13385.2	1
scaffold_24	alternate_exon	8698802	8698945	+	asmbl_32434	none	STRG.26878.2	1	STRG.26878.1,blat.proc3825178.chain_72	2
scaffold_4	alt_acceptor	12531346	12531347	-	asmbl_42918	none	STRG.4888.2	1	STRG.4888.1,Trinity_GG_2721_c0_g1_i3,blat.proc3825150.chain_1067,blat.proc3825150.chain_1068	4
scaffold_6	retained_intron	8581614	8581696	+	asmbl_47153,asmbl_47155	none	STRG.7738.2,blat.proc3825168.chain_176	2	STRG.7738.3,STRG.7738.4	2
scaffold_11	alternate_exon	8102877	8103388	+	asmbl_5730	none	Trinity_GG_24917_c1_g1_i8,blat.proc3825170.chain_2353	2	STRG.13823.4	1
scaffold_5	retained_intron	9085103	9085385	+	asmbl_45602,asmbl_45606	none	blat.proc3825166.chain_2474,blat.proc3825166.chain_2476	2	Trinity_GG_20732_c0_g1_i4,blat.proc3825166.chain_2480	2
scaffold_2	starts_in_intron	10374969	10374969	-	asmbl_23416	none	blat.proc3825148.chain_2237	1	STRG.2210.1,STRG.2210.2,blat.proc3825148.chain_2236,blat.proc3825148.chain_2238	4
scaffold_5	spliced_intron	10196467	10196618	-	asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44326,asmbl_44327	none	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2527,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2533	7	blat.proc3825150.chain_2530	1
scaffold_13	retained_intron	7217965	7219584	+	asmbl_11025,asmbl_11027	none	blat.proc3825172.chain_814,blat.proc3825172.chain_816	2	STRG.16019.1,blat.proc3825172.chain_810,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_815	5
scaffold_21	starts_in_intron	730477	730477	+	asmbl_28290	none	STRG.23764.3,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_971	3	STRG.23764.1	1
scaffold_18	alternate_exon	3917647	3920951	-	asmbl_19782	none	blat.proc3825158.chain_2160	1	STRG.21203.1	1
scaffold_9	spliced_intron	9369953	9370052	+	asmbl_54197,asmbl_54199	none	STRG.11291.1,blat.proc3825170.chain_41,blat.proc3825170.chain_42	3	blat.proc3825170.chain_43	1
scaffold_3	spliced_intron	3271219	3272019	-	asmbl_38761,asmbl_38767	none	STRG.3073.1,blat.proc3825148.chain_2952,blat.proc3825148.chain_2954	3	Trinity_GG_1668_c0_g1_i5,blat.proc3825148.chain_2949	2
scaffold_17	starts_in_intron	6799513	6799513	+	asmbl_18876	none	blat.proc3825174.chain_1166	1	STRG.20333.1,STRG.20333.2,blat.proc3825174.chain_1165,blat.proc3825174.chain_1167	4
scaffold_20	ends_in_intron	6655851	6655851	-	asmbl_25847	none	Trinity_GG_12978_c1_g1_i2,blat.proc3825160.chain_353	2	STRG.23241.1,STRG.23241.2,blat.proc3825160.chain_350,blat.proc3825160.chain_351	4
scaffold_3	ends_in_intron	11270158	11270158	+	asmbl_40336	none	Trinity_GG_19325_c0_g1_i1,blat.proc3825166.chain_77	2	STRG.3552.2,Trinity_GG_19325_c0_g1_i3,blat.proc3825166.chain_78	3
scaffold_2	starts_in_intron	6906118	6906118	+	asmbl_24503	none	Trinity_GG_18453_c0_g1_i2,blat.proc3825164.chain_2157	2	STRG.2036.2,blat.proc3825164.chain_2155	2
scaffold_8	starts_in_intron	6036253	6036253	+	asmbl_52935	none	blat.proc3825168.chain_2584	1	STRG.10010.1,Trinity_GG_22892_c0_g1_i1,Trinity_GG_22892_c0_g1_i4,blat.proc3825168.chain_2585,blat.proc3825168.chain_2586	5
scaffold_12	skipped_exon	3215826	3218027	-	asmbl_8351	none	STRG.14553.1,blat.proc3825154.chain_3041	2	STRG.14553.2,blat.proc3825154.chain_3043	2
scaffold_20	alt_acceptor	1754286	1754287	+	asmbl_26450	none	STRG.22921.2,Trinity_GG_29951_c0_g1_i3,blat.proc3825176.chain_125	3	STRG.22921.3	1
scaffold_16	alternate_exon	11335262	11335310	+	asmbl_16580	none	blat.proc3825174.chain_604	1	STRG.19664.1,STRG.19664.3,STRG.19664.4,blat.proc3825152.chain_406,blat.proc3825174.chain_603,blat.proc3825174.chain_605,blat.proc3825174.chain_606	7
scaffold_16	starts_in_intron	294545	294545	-	asmbl_16845	none	STRG.19020.2,blat.proc3825158.chain_139	2	STRG.19020.1,blat.proc3825158.chain_142	2
scaffold_6	alt_acceptor	18922656	18922657	-	asmbl_49292	none	STRG.8564.2,Trinity_GG_4879_c0_g1_i2,blat.proc3825152.chain_994	3	STRG.8564.3	1
scaffold_15	alt_donor	2903914	2903915	-	asmbl_14061	none	STRG.18078.6	1	STRG.18078.2,STRG.18078.5,blat.proc3825156.chain_2887,blat.proc3825156.chain_2888	4
scaffold_1	retained_intron	11066267	11066373	+	asmbl_2053	none	Trinity_GG_17749_c0_g1_i2,blat.proc3825164.chain_830	2	STRG.724.1,Trinity_GG_17749_c0_g1_i1,blat.proc3825164.chain_829	3
scaffold_15	alt_acceptor	15435985	15435986	-	asmbl_14784,asmbl_14787	none	STRG.18932.2,blat.proc3825156.chain_3727,blat.proc3825156.chain_3733	3	blat.proc3825156.chain_3728,blat.proc3825156.chain_3729	2
scaffold_1	spliced_intron	1909884	1910238	+	asmbl_1517,asmbl_1518	none	STRG.119.1,blat.proc3825164.chain_170,blat.proc3825164.chain_172	3	STRG.119.3,Trinity_GG_17362_c0_g1_i4,blat.proc3825164.chain_171	3
scaffold_10	alt_donor	10505457	10505458	-	asmbl_4745	none	STRG.12738.1,blat.proc3825154.chain_1358	2	blat.proc3825154.chain_1359	1
scaffold_13	starts_in_intron	7526508	7526508	-	asmbl_9899	none	blat.proc3825156.chain_944	1	STRG.16048.1,STRG.16048.2,STRG.16048.3,Trinity_GG_9022_c0_g1_i1,Trinity_GG_9022_c0_g1_i3,Trinity_GG_9022_c0_g1_i4,blat.proc3825156.chain_945,blat.proc3825156.chain_946,blat.proc3825156.chain_947	9
scaffold_13	retained_intron	3430216	3430310	+	asmbl_10692	none	Trinity_GG_25887_c0_g1_i5,blat.proc3825172.chain_353	2	STRG.15654.1,STRG.15654.2,Trinity_GG_25887_c0_g1_i1,Trinity_GG_25887_c0_g1_i3,Trinity_GG_25887_c0_g1_i4,blat.proc3825172.chain_351,blat.proc3825172.chain_352,blat.proc3825172.chain_354	8
scaffold_5	starts_in_intron	16845527	16845527	-	asmbl_44782	none	STRG.6872.2,Trinity_GG_3816_c2_g1_i1,blat.proc3825150.chain_2987	3	STRG.6872.3	1
scaffold_6	alternate_exon	14509650	14509870	+	asmbl_47619	none	STRG.8210.2,Trinity_GG_21845_c2_g1_i1,blat.proc3825168.chain_724	3	STRG.8210.1,Trinity_GG_21845_c0_g1_i2,blat.proc3825168.chain_722	3
scaffold_25	alt_donor	8700442	8700443	-	asmbl_34465	none	STRG.27695.5	1	STRG.27695.2,STRG.27695.3,blat.proc3825162.chain_1020,blat.proc3825162.chain_1023	4
scaffold_26	spliced_intron	9853517	9853606	+	asmbl_35282,asmbl_35283,asmbl_35284,asmbl_35286	none	STRG.28546.1,blat.proc3825178.chain_1573,blat.proc3825178.chain_1575,blat.proc3825178.chain_1577	4	STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1574,blat.proc3825178.chain_1576,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	9
scaffold_5	alt_donor	11630480	11630481	-	asmbl_44417	none	blat.proc3825150.chain_2642	1	blat.proc3825150.chain_2641	1
scaffold_28	spliced_intron	4440911	4440975	-	asmbl_38209	none	STRG.29625.2	1	STRG.29625.1,blat.proc3825162.chain_2822	2
scaffold_14	alt_acceptor	10406915	10406916	+	asmbl_12317	none	STRG.17392.2	1	STRG.17392.1	1
scaffold_20	alternate_exon	5115667	5115891	+	asmbl_26602	none	STRG.23147.1,Trinity_GG_30078_c0_g1_i5,blat.proc3825176.chain_325	3	blat.proc3825176.chain_322	1
scaffold_10	alt_acceptor	10809892	10809893	+	asmbl_3441	none	STRG.12767.1,Trinity_GG_24347_c0_g1_i2,blat.proc3825170.chain_1358	3	Trinity_GG_24347_c0_g1_i1,blat.proc3825170.chain_1359	2
scaffold_25	retained_intron	362923	362986	-	asmbl_33975	none	STRG.27079.1	1	blat.proc3825162.chain_431	1
scaffold_8	starts_in_intron	6118016	6118016	+	asmbl_52941	none	Trinity_GG_22863_c0_g3_i1,blat.proc3825168.chain_2544	2	STRG.10015.1,STRG.10015.2,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	4
scaffold_15	starts_in_intron	9882488	9882488	+	asmbl_15434	none	blat.proc3825172.chain_3137	1	STRG.18504.1,STRG.18504.2,blat.proc3825172.chain_3136	3
scaffold_11	retained_exon	11931003	11931261	-	asmbl_7043,asmbl_7044	none	STRG.14177.3,STRG.14177.4	2	STRG.14177.2	1
scaffold_2	retained_intron	7468981	7469051	-	asmbl_23264,asmbl_23266	none	blat.proc3825148.chain_2058,blat.proc3825148.chain_2064	2	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i24,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2052,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063	7
scaffold_17	alt_donor	8568832	8568833	-	asmbl_18102	none	blat.proc3825158.chain_1475	1	STRG.20469.1,blat.proc3825158.chain_1474	2
scaffold_17	alt_acceptor	8158326	8158327	+	asmbl_18937	none	STRG.20433.2	1	STRG.20433.1,blat.proc3825174.chain_1263,blat.proc3825174.chain_1265	3
scaffold_7	ends_in_intron	2590840	2590840	+	asmbl_49658	none	blat.proc3825168.chain_1142	1	STRG.8700.1	1
scaffold_9	alternate_exon	13606668	13607397	+	asmbl_54508	none	STRG.11647.4	1	STRG.11647.1,blat.proc3825170.chain_456	2
scaffold_13	spliced_intron	2321236	2321329	+	asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605,asmbl_10610,asmbl_10611	none	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.6,STRG.15564.7	6	blat.proc3825172.chain_232	1
scaffold_14	alt_acceptor	12325797	12325798	-	asmbl_13562,asmbl_13563,asmbl_13564	none	STRG.17560.1,blat.proc3825156.chain_2392,blat.proc3825156.chain_2393,blat.proc3825156.chain_2395	4	STRG.17560.2	1
scaffold_13	starts_in_intron	4076215	4076215	+	asmbl_10758	none	blat.proc3825172.chain_457	1	STRG.15729.1,STRG.15729.2,blat.proc3825172.chain_458	3
scaffold_10	alt_donor	8904111	8904112	-	asmbl_4640	none	STRG.12634.1	1	STRG.12634.2,STRG.12634.3,blat.proc3825154.chain_1246,blat.proc3825154.chain_1247,blat.proc3825154.chain_1248,blat.proc3825178.chain_3390	6
scaffold_15	ends_in_intron	9867800	9867800	+	asmbl_15424	none	blat.proc3825172.chain_3111	1	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3108	3
scaffold_26	retained_exon	3179305	3179382	-	asmbl_35473	none	STRG.28007.2,blat.proc3825162.chain_1323	2	STRG.28007.1,blat.proc3825162.chain_1324	2
scaffold_18	alt_acceptor	7662030	7662031	+	asmbl_20764,asmbl_20765,asmbl_20768	none	STRG.21471.4,STRG.21471.5,STRG.21471.6	3	STRG.21471.1,STRG.21471.2,STRG.21471.3	3
scaffold_13	alt_acceptor	2352538	2352539	+	asmbl_10595,asmbl_10604,asmbl_10605	none	STRG.15564.11,STRG.15564.2,STRG.15564.5	3	STRG.15564.12	1
scaffold_12	spliced_intron	6396998	6397091	-	asmbl_8529	none	STRG.14738.1,blat.proc3825154.chain_3280	2	blat.proc3825154.chain_3281	1
scaffold_22	retained_intron	215344	216306	+	asmbl_29819,asmbl_29820	none	STRG.24676.3,Trinity_GG_30960_c0_g1_i4,blat.proc3825176.chain_1806	3	STRG.24676.1,STRG.24676.2,blat.proc3825176.chain_1807,blat.proc3825176.chain_1808	4
scaffold_7	retained_exon	18393031	18393088	-	asmbl_51467,asmbl_51470,asmbl_51471,asmbl_51472,asmbl_51475,asmbl_51479	none	STRG.9670.2,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2021	9	STRG.9670.3,STRG.9670.4,blat.proc3825152.chain_2018,blat.proc3825152.chain_2020	4
scaffold_9	spliced_intron	3711582	3711674	-	asmbl_54932	none	STRG.10985.2,Trinity_GG_6069_c1_g1_i2,blat.proc3825152.chain_3185	3	STRG.10985.1,Trinity_GG_6069_c1_g1_i1,blat.proc3825152.chain_3184	3
scaffold_3	ends_in_intron	13720304	13720304	-	asmbl_39294	none	Trinity_GG_2032_c0_g1_i3,blat.proc3825148.chain_3577	2	STRG.3718.1,STRG.3718.2,Trinity_GG_2032_c0_g1_i1,Trinity_GG_2032_c0_g1_i4,blat.proc3825148.chain_3576,blat.proc3825148.chain_3579	6
scaffold_13	ends_in_intron	3811402	3811402	-	asmbl_9583	none	Trinity_GG_8794_c0_g1_i4,blat.proc3825156.chain_544	2	STRG.15712.1,blat.proc3825156.chain_543,blat.proc3825156.chain_545	3
scaffold_24	skipped_exon	9073530	9076142	+	asmbl_32489,asmbl_32490,asmbl_32491,asmbl_32496	none	STRG.26950.1,Trinity_GG_32214_c0_g1_i3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i6,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_148,blat.proc3825178.chain_149,blat.proc3825178.chain_150,blat.proc3825178.chain_151	9	STRG.26950.2	1
scaffold_2	spliced_intron	15455859	15455931	+	asmbl_25037,asmbl_25039,asmbl_25042,asmbl_25043	none	STRG.2500.1,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811	5	STRG.2500.2,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809	4
scaffold_4	retained_intron	17580414	17580979	+	asmbl_42063	none	STRG.5347.4	1	STRG.5347.1,STRG.5347.2	2
scaffold_16	alt_donor	15174353	15174354	+	asmbl_16716	none	STRG.19880.1,Trinity_GG_28160_c0_g1_i2,blat.proc3825174.chain_701	3	STRG.19880.2,Trinity_GG_28160_c0_g1_i1,blat.proc3825174.chain_700	3
scaffold_16	skipped_exon	12022195	12022875	-	asmbl_17384	none	STRG.19729.3	1	STRG.19729.2,blat.proc3825158.chain_788	2
scaffold_8	skipped_exon	11297094	11298833	+	asmbl_53218	none	Trinity_GG_23079_c0_g1_i4,blat.proc3825168.chain_2925	2	STRG.10343.1,STRG.10343.2,STRG.10343.3,Trinity_GG_23079_c0_g1_i2,Trinity_GG_23079_c0_g1_i3,blat.proc3825168.chain_2924,blat.proc3825168.chain_2926	7
scaffold_20	retained_intron	7899285	7899371	-	asmbl_25943	none	STRG.23342.1,Trinity_GG_13010_c1_g1_i2,blat.proc3825160.chain_408	3	STRG.23342.2,Trinity_GG_13010_c1_g1_i1,blat.proc3825160.chain_409	3
scaffold_21	starts_in_intron	8007980	8007980	+	asmbl_28777	none	Trinity_GG_30800_c1_g1_i5,Trinity_GG_30800_c1_g1_i6,blat.proc3825176.chain_1556,blat.proc3825176.chain_1558	4	STRG.24337.1,STRG.24337.2,STRG.24337.3,blat.proc3825176.chain_1553,blat.proc3825176.chain_1554,blat.proc3825176.chain_1555,blat.proc3825176.chain_1557	7
scaffold_19	retained_intron	96182	96339	-	asmbl_21982	none	Trinity_GG_12176_c0_g1_i3,blat.proc3825158.chain_2672	2	STRG.21827.2,Trinity_GG_12176_c0_g1_i2,blat.proc3825158.chain_2671	3
scaffold_26	alt_acceptor	9330586	9330587	-	asmbl_35776	none	STRG.28499.2	1	STRG.28499.1,blat.proc3825162.chain_1643	2
scaffold_11	retained_intron	11943331	11943516	-	asmbl_7047	none	Trinity_GG_7854_c2_g1_i1,blat.proc3825154.chain_2598	2	STRG.14177.4,STRG.14177.6,blat.proc3825154.chain_2596	3
scaffold_9	skipped_exon	5173038	5174369	+	asmbl_53999	none	STRG.11106.3	1	STRG.11106.1	1
scaffold_17	retained_intron	14040941	14041125	+	asmbl_19379	none	STRG.20874.1,blat.proc3825174.chain_1785	2	STRG.20874.2	1
scaffold_16	alt_donor	672773	672774	+	asmbl_16034	none	STRG.19045.5,Trinity_GG_27750_c0_g1_i4,blat.proc3825172.chain_3700	3	STRG.19045.1,STRG.19045.4,Trinity_GG_27750_c0_g1_i2,Trinity_GG_27750_c0_g1_i3,blat.proc3825172.chain_3697,blat.proc3825172.chain_3699	6
scaffold_17	retained_intron	3795219	3795317	+	asmbl_18738	none	STRG.20139.2	1	STRG.20139.1,blat.proc3825174.chain_943	2
scaffold_4	spliced_intron	5228399	5228662	-	asmbl_42575	none	blat.proc3825150.chain_650	1	STRG.4416.1,STRG.4416.3,Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_651	4
scaffold_3	retained_intron	16346254	16346337	-	asmbl_39497	none	Trinity_GG_2173_c1_g1_i2,blat.proc3825150.chain_119	2	Trinity_GG_2173_c1_g1_i1,blat.proc3825150.chain_118	2
scaffold_6	starts_in_intron	17882432	17882432	-	asmbl_49213	none	blat.proc3825152.chain_878	1	STRG.8481.1,STRG.8481.3,blat.proc3825152.chain_879,blat.proc3825152.chain_880	4
scaffold_23	spliced_intron	2197978	2198128	-	asmbl_30704,asmbl_30705	none	STRG.25691.1,STRG.25691.3,Trinity_GG_14344_c0_g1_i2,blat.proc3825160.chain_2812	4	Trinity_GG_14344_c0_g1_i1,blat.proc3825160.chain_2811	2
scaffold_16	alt_acceptor	4910214	4910215	-	asmbl_17080,asmbl_17083	none	STRG.19268.1,STRG.19268.2,Trinity_GG_10809_c0_g1_i3,blat.proc3825158.chain_384	4	STRG.19268.3	1
scaffold_9	alt_donor	12143006	12143007	-	asmbl_55356	none	STRG.11531.2	1	STRG.11531.1,blat.proc3825152.chain_3725	2
scaffold_18	retained_intron	206330	206526	+	asmbl_20275	none	Trinity_GG_28858_c0_g1_i1,blat.proc3825174.chain_1923	2	STRG.20974.1,STRG.20974.2,Trinity_GG_28858_c0_g1_i4,blat.proc3825174.chain_1917,blat.proc3825174.chain_1918,blat.proc3825174.chain_1920,blat.proc3825174.chain_1921,blat.proc3825174.chain_1922	8
scaffold_19	spliced_intron	9534078	9534340	+	asmbl_21609	none	STRG.22388.1,blat.proc3825174.chain_3377	2	STRG.22388.2,blat.proc3825174.chain_3376	2
scaffold_23	retained_intron	2038445	2038542	+	asmbl_31375	none	blat.proc3825176.chain_2603	1	STRG.25686.1,blat.proc3825176.chain_2601,blat.proc3825176.chain_2602	3
scaffold_9	alt_acceptor	13954784	13954785	-	asmbl_55469	none	blat.proc3825154.chain_145	1	STRG.11660.1	1
scaffold_14	retained_exon	3164853	3165018	+	asmbl_11907,asmbl_11908,asmbl_11910,asmbl_11911	none	STRG.16908.1,STRG.16908.3,STRG.16908.4,blat.proc3825172.chain_1612,blat.proc3825172.chain_1613	5	STRG.16908.5,blat.proc3825172.chain_1614	2
scaffold_26	alt_acceptor	9090113	9090114	-	asmbl_35768,asmbl_35769	none	STRG.28474.1,blat.proc3825162.chain_1693,blat.proc3825162.chain_1694	3	STRG.28474.2	1
scaffold_23	ends_in_intron	823614	823614	-	asmbl_30615	none	blat.proc3825160.chain_2715	1	STRG.25572.1	1
scaffold_4	ends_in_intron	8411838	8411838	+	asmbl_41559	none	Trinity_GG_19884_c0_g1_i2,blat.proc3825166.chain_1088	2	STRG.4671.1,STRG.4671.2,Trinity_GG_19884_c0_g1_i3,blat.proc3825166.chain_1087	4
scaffold_23	skipped_exon	2728397	2729974	+	asmbl_31421	none	STRG.25740.2,blat.proc3825176.chain_2702	2	STRG.25740.1,blat.proc3825176.chain_2701	2
scaffold_14	retained_intron	8416699	8416856	+	asmbl_12242,asmbl_12244	none	STRG.17281.2,STRG.17281.3,Trinity_GG_26820_c0_g1_i2,blat.proc3825172.chain_2052	4	STRG.17281.1,blat.proc3825172.chain_2049,blat.proc3825172.chain_2050	3
scaffold_15	retained_intron	12421366	12421557	+	asmbl_15561,asmbl_15563	none	blat.proc3825172.chain_3323,blat.proc3825172.chain_3326	2	STRG.18696.1,blat.proc3825172.chain_3324,blat.proc3825172.chain_3325	3
scaffold_23	alt_acceptor	7712236	7712237	+	asmbl_31729	none	STRG.26088.2	1	STRG.26088.1,blat.proc3825176.chain_3036,blat.proc3825176.chain_3037	3
scaffold_21	starts_in_intron	10942113	10942113	+	asmbl_28898	none	Trinity_GG_30889_c1_g1_i3,blat.proc3825176.chain_1694	2	STRG.24570.1,blat.proc3825176.chain_1695	2
scaffold_1	retained_intron	12450440	12450569	+	asmbl_2223	none	Trinity_GG_17840_c0_g1_i9,blat.proc3825164.chain_1026	2	STRG.859.3	1
scaffold_1	alternate_exon	14363432	14363603	-	asmbl_905,asmbl_908	none	STRG.1037.1,blat.proc3825148.chain_1032,blat.proc3825148.chain_1035	3	STRG.1037.2,STRG.1037.3,blat.proc3825148.chain_1034	3
scaffold_5	spliced_intron	9092983	9093116	+	asmbl_45608	none	STRG.6249.1,blat.proc3825166.chain_2470	2	blat.proc3825166.chain_2471	1
scaffold_8	alt_acceptor	14147819	14147820	-	asmbl_52300	none	STRG.10522.3	1	STRG.10522.1,STRG.10522.2,blat.proc3825152.chain_2757,blat.proc3825152.chain_2758	4
scaffold_9	alternate_exon	4826626	4827286	+	asmbl_53958	none	STRG.11058.1,blat.proc3825168.chain_3529	2	STRG.11058.2,Trinity_GG_23441_c0_g1_i2,blat.proc3825168.chain_3530	3
scaffold_12	starts_in_intron	12801620	12801620	+	asmbl_8024	none	blat.proc3825170.chain_3620	1	STRG.15177.1,STRG.15177.2,blat.proc3825170.chain_3619,blat.proc3825170.chain_3621	4
scaffold_27	retained_intron	3742551	3742650	-	asmbl_36919,asmbl_36922	none	STRG.28841.1,blat.proc3825162.chain_2086,blat.proc3825162.chain_2088	3	STRG.28841.2,STRG.28841.3,blat.proc3825162.chain_2085,blat.proc3825162.chain_2087	4
scaffold_15	retained_exon	3917382	3917412	+	asmbl_15115	none	STRG.18146.2	1	STRG.18146.1,Trinity_GG_27267_c1_g1_i1	2
scaffold_4	retained_exon	5035432	5035557	-	asmbl_42553,asmbl_42554	none	STRG.4399.1,STRG.4399.2	2	STRG.4399.3	1
scaffold_13	skipped_exon	15037437	15039366	-	asmbl_10222	none	STRG.16553.1,blat.proc3825156.chain_1380	2	STRG.16553.2,blat.proc3825156.chain_1379	2
scaffold_18	alt_donor	3093330	3093331	+	asmbl_20437	none	STRG.21145.1,Trinity_GG_28931_c0_g1_i2,blat.proc3825174.chain_2043	3	Trinity_GG_28931_c0_g1_i1,blat.proc3825174.chain_2044	2
scaffold_1	skipped_exon	5996412	5997450	-	asmbl_311,asmbl_314	none	STRG.404.1,blat.proc3825148.chain_397,blat.proc3825148.chain_403	3	STRG.404.2,blat.proc3825148.chain_399	2
scaffold_28	starts_in_intron	2277862	2277862	-	asmbl_38033	none	STRG.29398.1,blat.proc3825162.chain_2568	2	STRG.29398.2	1
scaffold_23	retained_exon	8102329	8102386	+	asmbl_31759	none	STRG.26124.2	1	STRG.26124.1	1
scaffold_11	retained_intron	15637023	15637151	+	asmbl_6121	none	STRG.14298.2	1	STRG.14298.1,blat.proc3825170.chain_2828	2
scaffold_23	alternate_exon	810025	810321	-	asmbl_30611	none	STRG.25583.2	1	STRG.25583.1,STRG.25583.3,blat.proc3825160.chain_2754	3
scaffold_20	spliced_intron	5923668	5924088	-	asmbl_25791	none	STRG.23199.4,blat.proc3825160.chain_276	2	STRG.23199.1,STRG.23199.2,Trinity_GG_12941_c0_g1_i5,blat.proc3825160.chain_277,blat.proc3825160.chain_281	5
scaffold_4	alt_donor	16689677	16689678	+	asmbl_42001	none	STRG.5247.1	1	STRG.5247.2,Trinity_GG_20201_c0_g1_i1,blat.proc3825166.chain_1566	3
scaffold_11	retained_intron	11641334	11641468	+	asmbl_5984,asmbl_5986,asmbl_5987,asmbl_5988	none	blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2640	4	STRG.14090.1,blat.proc3825170.chain_2633,blat.proc3825170.chain_2634,blat.proc3825170.chain_2639	4
scaffold_19	retained_intron	12250408	12251336	+	asmbl_21771,asmbl_21772	none	STRG.22554.2,Trinity_GG_29774_c0_g1_i2,blat.proc3825174.chain_3548	3	STRG.22554.1,Trinity_GG_29774_c0_g1_i1,blat.proc3825174.chain_3549	3
scaffold_18	alt_acceptor	7185351	7185352	+	asmbl_20715	none	STRG.21422.3	1	STRG.21422.1,STRG.21422.2,Trinity_GG_29133_c0_g1_i1,blat.proc3825174.chain_2426	4
scaffold_2	alt_donor	14643024	14643025	+	asmbl_24965	none	STRG.2460.1	1	STRG.2460.2	1
scaffold_9	alt_acceptor	17741810	17741811	+	asmbl_54639,asmbl_54641,asmbl_54642	none	STRG.11863.1,blat.proc3825170.chain_565,blat.proc3825170.chain_566,blat.proc3825170.chain_567	4	STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_563	3
scaffold_19	starts_in_intron	7581468	7581468	+	asmbl_21476,asmbl_21477	none	Trinity_GG_29596_c0_g1_i1,Trinity_GG_29596_c0_g1_i2,blat.proc3825174.chain_3234,blat.proc3825174.chain_3238	4	STRG.22236.1,STRG.22236.2,STRG.22236.3,blat.proc3825174.chain_3233,blat.proc3825174.chain_3236	5
scaffold_25	alt_donor	9337633	9337634	+	asmbl_33807	none	blat.proc3825178.chain_877,blat.proc3825178.chain_882	2	STRG.27762.1,blat.proc3825178.chain_878,blat.proc3825178.chain_879,blat.proc3825178.chain_881	4
scaffold_25	alternate_exon	3172115	3172287	-	asmbl_34106	none	STRG.27255.1,Trinity_GG_15250_c0_g1_i1,blat.proc3825162.chain_591	3	STRG.27255.2,Trinity_GG_15250_c0_g1_i3,blat.proc3825162.chain_590	3
scaffold_3	alternate_exon	1654852	1655297	-	asmbl_38723	none	STRG.2992.2,blat.proc3825148.chain_2801	2	blat.proc3825148.chain_2802	1
scaffold_18	spliced_intron	4690186	4690277	+	asmbl_20541,asmbl_20543	none	STRG.21258.1,STRG.21258.2	2	Trinity_GG_29018_c0_g1_i1,blat.proc3825174.chain_2208	2
scaffold_21	alt_donor	4105249	4105250	-	asmbl_27563	none	blat.proc3825160.chain_1125	1	blat.proc3825160.chain_1126	1
scaffold_6	spliced_intron	5438307	5438405	-	asmbl_48424	none	STRG.7514.1,blat.proc3825150.chain_3704	2	blat.proc3825150.chain_3705	1
scaffold_25	skipped_exon	5625718	5626514	-	asmbl_34273	none	blat.proc3825162.chain_829	1	STRG.27464.1,blat.proc3825162.chain_828	2
scaffold_9	alt_donor	12631060	12631061	+	asmbl_54447,asmbl_54451	none	STRG.11586.3,blat.proc3825170.chain_401,blat.proc3825170.chain_405	3	STRG.11586.4,STRG.11586.5,blat.proc3825170.chain_403	3
scaffold_13	retained_intron	9553953	9554101	+	asmbl_11207	none	STRG.16221.1,Trinity_GG_26224_c0_g1_i1,blat.proc3825172.chain_998	3	Trinity_GG_26224_c0_g1_i2,blat.proc3825172.chain_999	2
scaffold_11	alt_donor	3736373	3736374	-	asmbl_6570,asmbl_6572	none	STRG.13497.2,blat.proc3825154.chain_2061	2	STRG.13497.1,blat.proc3825154.chain_2060,blat.proc3825154.chain_2062	3
scaffold_10	retained_intron	4715798	4715921	-	asmbl_4308	none	STRG.12295.3	1	STRG.12295.1,blat.proc3825154.chain_858	2
scaffold_4	alt_acceptor	12535355	12535356	-	asmbl_42919	none	STRG.4889.2,blat.proc3825150.chain_1076	2	STRG.4889.1	1
scaffold_5	alternate_exon	13802962	13803018	-	asmbl_44563	none	blat.proc3825150.chain_2811	1	STRG.6602.1,blat.proc3825150.chain_2813,blat.proc3825150.chain_2814	3
scaffold_25	retained_intron	3709933	3710091	+	asmbl_33455	none	STRG.27320.1,Trinity_GG_32370_c0_g1_i1,blat.proc3825178.chain_411,blat.proc3825178.chain_413	4	STRG.27320.2,Trinity_GG_32370_c0_g1_i2,blat.proc3825178.chain_412	3
scaffold_7	alternate_exon	10545185	10548959	-	asmbl_51131	none	STRG.9231.1,blat.proc3825152.chain_1586	2	STRG.9231.3	1
scaffold_3	alt_acceptor	13989049	13989050	+	asmbl_40476,asmbl_40479	none	STRG.3744.1,STRG.3744.4,blat.proc3825166.chain_191	3	STRG.3744.3,STRG.3744.5,blat.proc3825166.chain_189	3
scaffold_2	retained_intron	4838417	4838709	-	asmbl_23101	none	blat.proc3825148.chain_1918	1	STRG.1905.1,blat.proc3825148.chain_1922	2
scaffold_1	spliced_intron	4567214	4567837	-	asmbl_207	none	STRG.285.3	1	STRG.285.4,Trinity_GG_95_c0_g1_i1,blat.proc3825148.chain_156	3
scaffold_19	starts_in_intron	13026534	13026534	-	asmbl_22590	none	STRG.22625.2,blat.proc3825158.chain_3479	2	STRG.22625.1,STRG.22625.3,blat.proc3825158.chain_3480	3
scaffold_6	alternate_exon	12495507	12499891	+	asmbl_47411	none	STRG.8009.2,Trinity_GG_21714_c0_g1_i1,Trinity_GG_21714_c0_g1_i2,blat.proc3825168.chain_490,blat.proc3825168.chain_491	5	STRG.8009.4,blat.proc3825168.chain_496	2
scaffold_10	retained_intron	3065795	3065893	-	asmbl_4155,asmbl_4158,asmbl_4159	none	STRG.12130.2,blat.proc3825154.chain_662,blat.proc3825154.chain_663,blat.proc3825154.chain_666	4	STRG.12130.3,blat.proc3825154.chain_665,blat.proc3825154.chain_667	3
scaffold_1	alternate_exon	5135646	5136100	+	asmbl_1699	none	STRG.321.1	1	STRG.321.2,blat.proc3825164.chain_410,blat.proc3825164.chain_412	3
scaffold_13	alt_donor	393532	393533	-	asmbl_9336	none	Trinity_GG_8688_c0_g1_i12,blat.proc3825156.chain_365	2	Trinity_GG_8688_c0_g1_i24,blat.proc3825156.chain_351	2
scaffold_20	alt_acceptor	10096035	10096036	+	asmbl_26923	none	STRG.23554.1,blat.proc3825176.chain_712	2	STRG.23554.2	1
scaffold_13	alt_donor	6426607	6426608	+	asmbl_10937	none	STRG.15942.1	1	STRG.15942.2	1
scaffold_2	retained_exon	2883733	2883825	-	asmbl_22939	none	blat.proc3825148.chain_1668	1	STRG.1736.1,STRG.1736.2,STRG.1736.3,blat.proc3825148.chain_1666,blat.proc3825148.chain_1667,blat.proc3825148.chain_1669,blat.proc3825148.chain_1670,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672,blat.proc3825148.chain_1673,blat.proc3825148.chain_1674	11
scaffold_6	retained_intron	15944850	15944965	+	asmbl_47679,asmbl_47682	none	STRG.8324.1,STRG.8324.4	2	STRG.8324.3	1
scaffold_19	alt_donor	12580859	12580860	-	asmbl_22522	none	STRG.22585.2	1	STRG.22585.1	1
scaffold_4	retained_intron	6949321	6949391	+	asmbl_41434,asmbl_41435,asmbl_41436	none	STRG.4536.2,Trinity_GG_19782_c0_g1_i2,Trinity_GG_19782_c0_g1_i4,blat.proc3825166.chain_912,blat.proc3825166.chain_913	5	STRG.4536.1,STRG.4536.3,Trinity_GG_19782_c0_g1_i1,blat.proc3825166.chain_911	4
scaffold_20	retained_intron	8292117	8292345	+	asmbl_26756,asmbl_26761	none	STRG.23374.1,Trinity_GG_30200_c0_g1_i3,blat.proc3825176.chain_517,blat.proc3825176.chain_520	4	STRG.23374.2,STRG.23374.3,STRG.23374.4,blat.proc3825176.chain_518,blat.proc3825176.chain_519	5
scaffold_5	retained_intron	18561081	18561149	+	asmbl_46270	none	Trinity_GG_21132_c0_g1_i13,blat.proc3825166.chain_3156	2	STRG.6987.2,Trinity_GG_21132_c0_g1_i3,blat.proc3825166.chain_3149	3
scaffold_5	retained_intron	10195750	10195849	-	asmbl_44325	none	blat.proc3825150.chain_2532	1	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2527,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531,blat.proc3825150.chain_2533	9
scaffold_12	alt_donor	10169629	10169630	+	asmbl_7906	none	STRG.14988.1	1	STRG.14988.2	1
scaffold_2	starts_in_intron	19884329	19884329	-	asmbl_23876	none	blat.proc3825148.chain_2776	1	STRG.2835.2,blat.proc3825148.chain_2778	2
scaffold_11	spliced_intron	2061692	2061854	+	asmbl_5352,asmbl_5354,asmbl_5356	none	STRG.13366.1,STRG.13366.2,STRG.13366.4,blat.proc3825170.chain_1922,blat.proc3825170.chain_1926	5	STRG.13366.3,blat.proc3825170.chain_1924	2
scaffold_28	starts_in_intron	5208588	5208588	-	asmbl_38251	none	STRG.29669.2,blat.proc3825162.chain_2754	2	STRG.29669.1	1
scaffold_5	alt_donor	8579152	8579153	+	asmbl_45556	none	STRG.6193.1,Trinity_GG_20689_c0_g1_i1,blat.proc3825166.chain_2403	3	STRG.6193.2	1
scaffold_4	ends_in_intron	16808476	16808476	-	asmbl_43220	none	Trinity_GG_2918_c0_g1_i4,blat.proc3825150.chain_1386	2	STRG.5269.1,blat.proc3825150.chain_1387,blat.proc3825150.chain_1388	3
scaffold_17	alt_donor	14040943	14040944	+	asmbl_19381	none	STRG.20874.3	1	STRG.20874.2	1
scaffold_23	retained_intron	3622625	3622729	+	asmbl_31455	none	STRG.25784.1,blat.proc3825176.chain_2715	2	STRG.25784.2	1
scaffold_20	alt_acceptor	8676934	8676935	+	asmbl_26795	none	STRG.23416.2	1	STRG.23416.1,blat.proc3825176.chain_500	2
scaffold_27	retained_intron	5049610	5049786	-	asmbl_36981	none	STRG.28938.1,Trinity_GG_16227_c0_g1_i2,blat.proc3825162.chain_2175	3	STRG.28938.4,STRG.28938.5	2
scaffold_19	alt_acceptor	1111294	1111295	-	asmbl_22027	none	STRG.21903.1	1	STRG.21903.4	1
scaffold_3	spliced_intron	10305664	10306094	+	asmbl_40262,asmbl_40265	none	STRG.3476.1,Trinity_GG_19250_c1_g1_i1,Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700,blat.proc3825164.chain_3702	5	STRG.3476.2,Trinity_GG_19250_c1_g1_i2,blat.proc3825164.chain_3699	3
scaffold_3	alt_acceptor	7958145	7958146	-	asmbl_39006,asmbl_39007	none	STRG.3392.2,blat.proc3825148.chain_3237,blat.proc3825148.chain_3238	3	STRG.3392.1,blat.proc3825148.chain_3240,blat.proc3825148.chain_3241	3
scaffold_17	retained_intron	8848586	8849302	+	asmbl_19029	none	STRG.20496.1,Trinity_GG_28544_c0_g1_i2	2	STRG.20496.2	1
scaffold_16	starts_in_intron	15223408	15223408	+	asmbl_16723	none	STRG.19882.4	1	STRG.19882.1,STRG.19882.2,STRG.19882.3,blat.proc3825174.chain_761	4
scaffold_23	starts_in_intron	2634715	2634715	+	asmbl_31412	none	STRG.25731.5,Trinity_GG_31521_c0_g1_i6,blat.proc3825176.chain_2693	3	STRG.25731.1,STRG.25731.2,STRG.25731.4	3
scaffold_9	alternate_exon	18389688	18389712	+	asmbl_54665	none	blat.proc3825170.chain_644	1	STRG.11879.1,STRG.11879.3	2
scaffold_15	spliced_intron	8628465	8629828	-	asmbl_14345	none	STRG.18411.1,blat.proc3825156.chain_3296,blat.proc3825156.chain_3298	3	Trinity_GG_10362_c0_g1_i3,Trinity_GG_10362_c0_g1_i4,blat.proc3825156.chain_3297,blat.proc3825156.chain_3299	4
scaffold_9	ends_in_intron	8944530	8944530	-	asmbl_55152	none	Trinity_GG_6237_c0_g1_i2,blat.proc3825152.chain_3498	2	blat.proc3825152.chain_3497	1
scaffold_23	retained_intron	4950206	4950422	+	asmbl_31541	none	Trinity_GG_31594_c0_g1_i5,blat.proc3825176.chain_2823	2	Trinity_GG_31594_c0_g1_i1,blat.proc3825176.chain_2824	2
scaffold_7	skipped_exon	5097042	5097668	+	asmbl_49781	none	STRG.8853.2,blat.proc3825168.chain_1321	2	STRG.8853.1,blat.proc3825168.chain_1322	2
scaffold_23	retained_intron	7686045	7686483	+	asmbl_31717,asmbl_31719	none	STRG.26090.4,Trinity_GG_31727_c0_g1_i6,blat.proc3825176.chain_3055	3	STRG.26090.3,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i3,blat.proc3825176.chain_3053,blat.proc3825176.chain_3054	5
scaffold_14	retained_intron	13217591	13219618	+	asmbl_12461	none	STRG.17621.2,blat.proc3825172.chain_2346	2	STRG.17621.1,STRG.17621.3,blat.proc3825172.chain_2334	3
scaffold_340	ends_in_intron	4605	4605	+	asmbl_41017	none	Trinity_GG_34082_c0_g2_i1	1	Trinity_GG_34082_c0_g1_i1,blat.proc3825178.chain_3388	2
scaffold_5	spliced_intron	8746681	8747979	+	asmbl_45565,asmbl_45567	none	STRG.6210.2,Trinity_GG_20640_c0_g1_i4,Trinity_GG_20640_c0_g1_i5,blat.proc3825166.chain_2309,blat.proc3825166.chain_2310	5	STRG.6210.1,Trinity_GG_20640_c0_g1_i3,blat.proc3825166.chain_2311	3
scaffold_7	spliced_intron	5916762	5917155	-	asmbl_50899	none	STRG.8897.2,blat.proc3825152.chain_1284	2	blat.proc3825152.chain_1286,blat.proc3825152.chain_1288	2
scaffold_14	retained_intron	151364	151904	-	asmbl_12777,asmbl_12781	none	STRG.16711.4,blat.proc3825156.chain_1519,blat.proc3825156.chain_1520	3	STRG.16711.2,STRG.16711.3,blat.proc3825156.chain_1521	3
scaffold_22	alternate_exon	7884825	7884917	-	asmbl_29432	none	blat.proc3825160.chain_2296	1	STRG.25144.1,blat.proc3825160.chain_2295,blat.proc3825160.chain_2297	3
scaffold_1	alt_donor	7803095	7803096	-	asmbl_443	none	STRG.543.2	1	STRG.543.1,blat.proc3825148.chain_488	2
scaffold_2	starts_in_intron	5896924	5896924	+	asmbl_24447	none	STRG.1971.2,Trinity_GG_18369_c0_g1_i1,blat.proc3825164.chain_2031	3	STRG.1971.1,Trinity_GG_18369_c0_g1_i2,blat.proc3825164.chain_2030	3
scaffold_6	skipped_exon	19115800	19116587	-	asmbl_49303	none	STRG.8585.5	1	STRG.8585.1,Trinity_GG_4894_c0_g1_i2,blat.proc3825152.chain_1021	3
scaffold_20	ends_in_intron	4369282	4369282	+	asmbl_26581	none	blat.proc3825176.chain_243	1	STRG.23122.1,STRG.23122.2,blat.proc3825176.chain_244	3
scaffold_2	spliced_intron	8300696	8300832	+	asmbl_24625,asmbl_24626,asmbl_24627,asmbl_24629	none	STRG.2114.1,STRG.2114.2,STRG.2114.3,blat.proc3825164.chain_2306,blat.proc3825164.chain_2307,blat.proc3825164.chain_2311	6	blat.proc3825164.chain_2310	1
scaffold_21	ends_in_intron	6713792	6713792	+	asmbl_28691	none	blat.proc3825176.chain_1364	1	STRG.24197.1	1
scaffold_3	alternate_exon	17359128	17359247	-	asmbl_39546	none	STRG.3966.2	1	STRG.3966.1,blat.proc3825150.chain_153	2
scaffold_4	retained_intron	17472694	17472804	-	asmbl_43270	none	STRG.5334.1,Trinity_GG_2943_c0_g1_i1,blat.proc3825150.chain_1441	3	Trinity_GG_2943_c0_g1_i2,blat.proc3825150.chain_1440	2
scaffold_27	retained_exon	5798208	5798314	-	asmbl_37025	none	STRG.28982.2	1	STRG.28982.1	1
scaffold_4	alt_acceptor	4095984	4095985	+	asmbl_41219	none	STRG.4315.1,blat.proc3825166.chain_704	2	STRG.4315.3,STRG.4315.4,blat.proc3825166.chain_703,blat.proc3825166.chain_707	4
scaffold_13	ends_in_intron	1230993	1230993	+	asmbl_10549,asmbl_10555	none	STRG.15494.3,Trinity_GG_25867_c1_g1_i3,blat.proc3825172.chain_313	3	STRG.15494.1,STRG.15494.2,Trinity_GG_25867_c1_g1_i2,blat.proc3825172.chain_314	4
scaffold_23	retained_intron	3573591	3574929	+	asmbl_31444	none	blat.proc3825176.chain_2649,blat.proc3825176.chain_2652	2	STRG.25778.1,blat.proc3825176.chain_2650	2
scaffold_10	retained_intron	715100	715709	-	asmbl_3986,asmbl_3987,asmbl_3990,asmbl_3991	none	STRG.11957.2,STRG.11957.3,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541,blat.proc3825154.chain_545	5	STRG.11957.1,STRG.11957.4,STRG.11957.5	3
scaffold_22	alt_acceptor	6841097	6841098	-	asmbl_29338	none	blat.proc3825160.chain_2175	1	blat.proc3825160.chain_2173,blat.proc3825160.chain_2176	2
scaffold_13	spliced_intron	989090	989193	-	asmbl_9394	none	STRG.15479.1,Trinity_GG_8680_c0_g1_i2,blat.proc3825156.chain_338	3	Trinity_GG_8680_c0_g1_i1,blat.proc3825156.chain_337	2
scaffold_1	spliced_intron	6283222	6283603	-	asmbl_335,asmbl_341,asmbl_344,asmbl_346	none	STRG.423.1,STRG.423.3,blat.proc3825148.chain_414,blat.proc3825148.chain_418	4	blat.proc3825148.chain_412	1
scaffold_14	spliced_intron	11574210	11574361	-	asmbl_13497,asmbl_13498,asmbl_13499,asmbl_13501	none	STRG.17499.2,STRG.17499.3,STRG.17499.4,blat.proc3825156.chain_2302,blat.proc3825156.chain_2304	5	STRG.17499.1,Trinity_GG_9808_c0_g2_i1,blat.proc3825156.chain_2305	3
scaffold_1	spliced_intron	12745383	12745532	-	asmbl_749	none	STRG.895.3,blat.proc3825148.chain_851	2	STRG.895.2,STRG.895.4,blat.proc3825148.chain_849	3
scaffold_11	retained_intron	170652	171007	+	asmbl_5260	none	STRG.13244.2	1	STRG.13244.1	1
scaffold_4	ends_in_intron	17115401	17115401	+	asmbl_42038	none	Trinity_GG_20255_c0_g1_i5	1	STRG.5308.1,STRG.5308.3,Trinity_GG_20255_c0_g1_i1,blat.proc3825166.chain_1665,blat.proc3825166.chain_1666	5
scaffold_24	spliced_intron	10480275	10480714	+	asmbl_32563,asmbl_32564	none	STRG.27018.1,STRG.27018.3,blat.proc3825178.chain_204,blat.proc3825178.chain_205	4	blat.proc3825178.chain_206	1
scaffold_15	alt_acceptor	4566578	4566579	+	asmbl_15161	none	Trinity_GG_27289_c0_g1_i4,blat.proc3825172.chain_2866	2	STRG.18186.2,Trinity_GG_27289_c0_g1_i2,blat.proc3825172.chain_2865	3
scaffold_24	spliced_intron	655307	655405	+	asmbl_32031	none	Trinity_GG_31870_c0_g1_i3,blat.proc3825176.chain_3308	2	Trinity_GG_31870_c0_g1_i1,blat.proc3825176.chain_3309	2
scaffold_27	alt_acceptor	2820672	2820673	+	asmbl_36125	none	STRG.28763.5	1	STRG.28763.2,STRG.28763.3,blat.proc3825178.chain_1925	3
scaffold_13	skipped_exon	517905	518487	+	asmbl_10486,asmbl_10489	none	STRG.15449.2,blat.proc3825172.chain_179,blat.proc3825172.chain_182	3	STRG.15449.4,blat.proc3825172.chain_183	2
scaffold_15	alt_donor	4786942	4786943	-	asmbl_14159	none	STRG.18195.2,blat.proc3825156.chain_3029	2	STRG.18195.1	1
scaffold_11	alternate_exon	12001357	12001450	-	asmbl_7059	none	Trinity_GG_7897_c0_g1_i1,blat.proc3825154.chain_2673	2	STRG.14126.1,STRG.14126.4,Trinity_GG_7897_c0_g1_i4,blat.proc3825154.chain_2671	4
scaffold_17	ends_in_intron	2731220	2731220	-	asmbl_17778	none	Trinity_GG_11269_c0_g1_i2,blat.proc3825158.chain_1121	2	STRG.20075.1,blat.proc3825158.chain_1120	2
scaffold_4	starts_in_intron	7619300	7619300	-	asmbl_42726	none	Trinity_GG_2520_c0_g1_i1	1	STRG.4596.1,blat.proc3825150.chain_742	2
scaffold_12	alternate_exon	4722769	4722836	-	asmbl_8432,asmbl_8434	none	STRG.14649.5,blat.proc3825154.chain_3100,blat.proc3825154.chain_3101	3	STRG.14649.2,STRG.14649.4	2
scaffold_8	spliced_intron	11850678	11850826	+	asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53288	none	STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3016,blat.proc3825168.chain_3019,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022,blat.proc3825168.chain_3023,blat.proc3825168.chain_3025,blat.proc3825168.chain_3027	10	STRG.10390.2,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021	3
scaffold_21	retained_exon	10251262	10251308	-	asmbl_28014	none	STRG.24486.1,Trinity_GG_13668_c0_g1_i1,blat.proc3825160.chain_1655	3	STRG.24486.2,Trinity_GG_13668_c0_g1_i2,blat.proc3825160.chain_1654	3
scaffold_7	retained_exon	15316971	15317130	-	asmbl_51368	none	STRG.9548.2,Trinity_GG_5358_c0_g1_i1,blat.proc3825152.chain_1893,blat.proc3825152.chain_1895	4	STRG.9548.3	1
scaffold_8	spliced_intron	4852233	4852322	+	asmbl_52858,asmbl_52859	none	STRG.9951.1,STRG.9951.2,blat.proc3825168.chain_2523,blat.proc3825168.chain_2528	4	Trinity_GG_22856_c0_g1_i6,blat.proc3825168.chain_2524,blat.proc3825168.chain_2526	3
scaffold_13	starts_in_intron	4601724	4601724	-	asmbl_9640,asmbl_9651	none	STRG.15796.2,blat.proc3825156.chain_664	2	STRG.15796.1,Trinity_GG_8874_c0_g1_i5,Trinity_GG_8874_c0_g1_i6,blat.proc3825156.chain_662,blat.proc3825156.chain_665,blat.proc3825156.chain_666,blat.proc3825156.chain_670,blat.proc3825156.chain_673	8
scaffold_16	alt_acceptor	9032992	9032993	+	asmbl_16454	none	STRG.19515.2,blat.proc3825174.chain_440	2	STRG.19515.1,STRG.19515.3,blat.proc3825174.chain_442	3
scaffold_1	retained_intron	8645480	8646817	-	asmbl_466	none	Trinity_GG_322_c0_g1_i4,blat.proc3825148.chain_583,blat.proc3825148.chain_585	3	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_584	4
scaffold_78	alt_acceptor	17463	17464	+	asmbl_51658	none	STRG.30126.1,Trinity_GG_33987_c0_g1_i2	2	STRG.30126.2	1
scaffold_26	alt_acceptor	3561048	3561049	+	asmbl_34792	none	STRG.28036.2	1	STRG.28036.1,STRG.28036.3,STRG.28036.4	3
scaffold_5	spliced_intron	15765826	15766010	+	asmbl_46014,asmbl_46016,asmbl_46017,asmbl_46018,asmbl_46019,asmbl_46020	none	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	7	blat.proc3825166.chain_2918	1
scaffold_21	retained_intron	2475393	2475501	-	asmbl_27461	none	STRG.23874.2	1	STRG.23874.1,blat.proc3825160.chain_1043,blat.proc3825160.chain_1045,blat.proc3825160.chain_1047,blat.proc3825160.chain_1048	5
scaffold_26	spliced_intron	4690170	4690297	-	asmbl_35585,asmbl_35586,asmbl_35587,asmbl_35588	none	STRG.28194.1,STRG.28194.2,STRG.28194.3,blat.proc3825162.chain_1410,blat.proc3825162.chain_1412	5	blat.proc3825162.chain_1413	1
scaffold_28	retained_intron	56228	56300	-	asmbl_37886	none	blat.proc3825162.chain_2402	1	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2400	3
scaffold_7	retained_intron	8795676	8795757	+	asmbl_50055	none	blat.proc3825168.chain_1652	1	blat.proc3825168.chain_1653	1
scaffold_7	alt_acceptor	12271071	12271072	+	asmbl_50231	none	STRG.9326.3,Trinity_GG_22467_c0_g1_i1,Trinity_GG_22467_c0_g1_i3,blat.proc3825168.chain_1802	4	STRG.9326.2,STRG.9326.4,STRG.9326.6,Trinity_GG_22467_c0_g1_i4,Trinity_GG_22467_c0_g1_i5,blat.proc3825168.chain_1798,blat.proc3825168.chain_1806	7
scaffold_2	alternate_exon	4331448	4331479	-	asmbl_23069	none	STRG.1863.2,blat.proc3825148.chain_1793	2	STRG.1863.1,blat.proc3825148.chain_1794	2
scaffold_24	alt_acceptor	8553982	8553983	-	asmbl_33085	none	STRG.26869.2,blat.proc3825162.chain_236	2	STRG.26869.1,blat.proc3825162.chain_237	2
scaffold_14	skipped_exon	14143142	14144218	+	asmbl_12523,asmbl_12525,asmbl_12528	none	STRG.17687.1,STRG.17687.3,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	4	STRG.17687.2,STRG.17687.4	2
scaffold_21	retained_exon	257074	257152	-	asmbl_27282,asmbl_27286	none	STRG.23725.5,blat.proc3825160.chain_811,blat.proc3825160.chain_812	3	STRG.23725.4	1
scaffold_1	retained_intron	5208949	5209138	+	asmbl_1713,asmbl_1716	none	blat.proc3825164.chain_464,blat.proc3825164.chain_470	2	STRG.329.1,STRG.329.2,STRG.329.3,blat.proc3825164.chain_465,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_468,blat.proc3825164.chain_471,blat.proc3825164.chain_472,blat.proc3825164.chain_474,blat.proc3825164.chain_476	11
scaffold_18	alt_acceptor	13470758	13470759	+	asmbl_21022,asmbl_21023	none	Trinity_GG_29359_c1_g1_i3,blat.proc3825174.chain_2818,blat.proc3825174.chain_2819	3	blat.proc3825174.chain_2820	1
scaffold_28	spliced_intron	3734861	3735230	-	asmbl_38169,asmbl_38171	none	STRG.29587.3,blat.proc3825162.chain_2736	2	blat.proc3825162.chain_2738	1
scaffold_7	alternate_exon	17319601	17319708	+	asmbl_50480	none	STRG.9607.1	1	STRG.9607.2,STRG.9607.3,blat.proc3825168.chain_2128	3
scaffold_2	alt_acceptor	16286022	16286023	+	asmbl_25108	none	STRG.2562.1,blat.proc3825164.chain_2842	2	STRG.2562.2,blat.proc3825164.chain_2841,blat.proc3825164.chain_2843	3
scaffold_9	spliced_intron	119321	119545	+	asmbl_53753	none	STRG.10771.3,blat.proc3825168.chain_3303	2	STRG.10771.2,Trinity_GG_23289_c0_g1_i1,blat.proc3825168.chain_3302	3
scaffold_3	alt_acceptor	935338	935339	-	asmbl_38686	none	STRG.2916.1	1	blat.proc3825148.chain_2837	1
scaffold_9	starts_in_intron	12635293	12635293	+	asmbl_54448	none	blat.proc3825170.chain_407	1	STRG.11586.1,STRG.11586.2,STRG.11586.3,blat.proc3825170.chain_403,blat.proc3825170.chain_405,blat.proc3825170.chain_406	6
scaffold_4	retained_intron	4113314	4113401	-	asmbl_42484	none	blat.proc3825150.chain_478	1	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_477,blat.proc3825150.chain_479,blat.proc3825150.chain_480,blat.proc3825150.chain_481,blat.proc3825150.chain_482	8
scaffold_14	retained_intron	5597398	5598031	+	asmbl_12032	none	blat.proc3825172.chain_1830	1	STRG.17042.1,STRG.17042.2,blat.proc3825172.chain_1824,blat.proc3825172.chain_1828	4
scaffold_28	spliced_intron	7720311	7721514	+	asmbl_37703,asmbl_37706	none	STRG.29845.1,blat.proc3825178.chain_3019,blat.proc3825178.chain_3022	3	STRG.29845.2,Trinity_GG_33846_c1_g1_i6,blat.proc3825178.chain_3017,blat.proc3825178.chain_3021	4
scaffold_13	starts_in_intron	278606	278606	+	asmbl_10471,asmbl_10473	none	STRG.15434.4,Trinity_GG_25812_c0_g1_i2,blat.proc3825172.chain_199	3	STRG.15434.1,STRG.15434.2,STRG.15434.3,blat.proc3825172.chain_196,blat.proc3825172.chain_197,blat.proc3825172.chain_198	6
scaffold_7	spliced_intron	1235897	1236328	+	asmbl_49588,asmbl_49589,asmbl_49590,asmbl_49592,asmbl_49593,asmbl_49594	none	STRG.8637.1,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i4,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072,blat.proc3825168.chain_1074,blat.proc3825168.chain_1079	9	STRG.8637.2	1
scaffold_7	ends_in_intron	13890610	13890610	+	asmbl_50382	none	blat.proc3825168.chain_2018	1	STRG.9487.1,STRG.9487.2,Trinity_GG_22588_c0_g1_i1,blat.proc3825168.chain_2017	4
scaffold_17	spliced_intron	9447461	9447558	+	asmbl_19083,asmbl_19086	none	STRG.20569.1,Trinity_GG_28584_c0_g1_i3,Trinity_GG_28584_c0_g1_i4,blat.proc3825174.chain_1442,blat.proc3825174.chain_1443	5	Trinity_GG_28584_c0_g1_i2,blat.proc3825174.chain_1439	2
scaffold_6	alt_donor	5628740	5628741	+	asmbl_46960	none	STRG.7520.1,Trinity_GG_21421_c0_g1_i2,blat.proc3825166.chain_3704	3	STRG.7520.2,Trinity_GG_21421_c0_g1_i1,blat.proc3825166.chain_3703	3
scaffold_27	alternate_exon	4803905	4804258	-	asmbl_36973	none	STRG.28921.2,Trinity_GG_16204_c0_g1_i1	2	STRG.28921.4	1
scaffold_26	spliced_intron	3562965	3563144	+	asmbl_34791	none	STRG.28036.4	1	STRG.28036.5,Trinity_GG_32778_c0_g1_i5,blat.proc3825178.chain_1076,blat.proc3825178.chain_1077	4
scaffold_5	alt_donor	16152171	16152172	+	asmbl_46056	none	STRG.6799.1,blat.proc3825166.chain_2944	2	STRG.6799.2,blat.proc3825166.chain_2945	2
scaffold_321	alt_acceptor	2207	2208	-	asmbl_40958	none	STRG.30277.1,Trinity_GG_16988_c0_g1_i3,blat.proc3825162.chain_3408	3	STRG.30277.2,Trinity_GG_16988_c0_g1_i2,blat.proc3825162.chain_3406	3
scaffold_14	alt_acceptor	5958798	5958799	-	asmbl_13106	none	STRG.17069.1,blat.proc3825156.chain_1863	2	STRG.17069.2	1
scaffold_1	ends_in_intron	8976827	8976827	-	asmbl_504	none	Trinity_GG_314_c0_g1_i1,blat.proc3825148.chain_564	2	STRG.592.1,Trinity_GG_314_c0_g1_i2,blat.proc3825148.chain_563	3
scaffold_11	spliced_intron	174383	174536	+	asmbl_5263,asmbl_5265,asmbl_5266,asmbl_5267,asmbl_5269	none	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1809,blat.proc3825170.chain_1810,blat.proc3825170.chain_1811,blat.proc3825170.chain_1813	6	blat.proc3825170.chain_1814	1
scaffold_20	spliced_intron	10856589	10856956	+	asmbl_26996,asmbl_26999	none	STRG.23612.1,Trinity_GG_30381_c0_g1_i3,blat.proc3825176.chain_805,blat.proc3825176.chain_806	4	Trinity_GG_30381_c0_g1_i1,blat.proc3825176.chain_804	2
scaffold_23	retained_exon	7279357	7279426	-	asmbl_31022	none	STRG.26052.1,blat.proc3825160.chain_3144	2	STRG.26052.3	1
scaffold_15	retained_intron	13325950	13326951	+	asmbl_15628,asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15634,asmbl_15635,asmbl_15636,asmbl_15637	none	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3385,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	11	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,blat.proc3825172.chain_3386	3
scaffold_6	skipped_exon	17885654	17886621	+	asmbl_47799	none	Trinity_GG_21935_c0_g1_i6,blat.proc3825168.chain_876	2	STRG.8482.3,Trinity_GG_21935_c0_g1_i2,blat.proc3825168.chain_877	3
scaffold_2	skipped_exon	16357457	16357947	+	asmbl_25123	none	STRG.2575.2	1	STRG.2575.1,blat.proc3825164.chain_2859	2
scaffold_9	starts_in_intron	11753443	11753443	+	asmbl_54377	none	Trinity_GG_23702_c0_g1_i1,blat.proc3825170.chain_279	2	STRG.11491.1,STRG.11491.2,blat.proc3825170.chain_278	3
scaffold_5	retained_intron	4865673	4866834	+	asmbl_45308,asmbl_45309	none	STRG.5946.3,Trinity_GG_20566_c0_g1_i1,Trinity_GG_20566_c0_g1_i4,blat.proc3825166.chain_2171,blat.proc3825166.chain_2173	5	STRG.5946.2,blat.proc3825166.chain_2172	2
scaffold_3	spliced_intron	19882464	19882567	-	asmbl_39676	none	STRG.4100.5	1	STRG.4100.2,blat.proc3825150.chain_241	2
scaffold_6	retained_intron	4538209	4538372	-	asmbl_48334,asmbl_48337	none	STRG.7434.4,STRG.7434.5,Trinity_GG_4189_c1_g2_i2	3	STRG.7434.1,Trinity_GG_4189_c1_g2_i1	2
scaffold_19	alternate_exon	3201874	3207186	+	asmbl_21308	none	STRG.22012.1,blat.proc3825174.chain_3043,blat.proc3825174.chain_3044	3	STRG.22012.2,blat.proc3825174.chain_3042	2
scaffold_12	alt_acceptor	9234535	9234536	-	asmbl_8666,asmbl_8671	none	STRG.14939.3,blat.proc3825154.chain_3455	2	STRG.14939.1,STRG.14939.5,blat.proc3825154.chain_3447,blat.proc3825154.chain_3450,blat.proc3825154.chain_3451,blat.proc3825154.chain_3454,blat.proc3825154.chain_3456	7
scaffold_11	retained_intron	13462735	13462822	-	asmbl_7130	none	STRG.14207.1,Trinity_GG_7945_c0_g1_i4,blat.proc3825154.chain_2749	3	STRG.14207.2,STRG.14207.3,Trinity_GG_7945_c0_g1_i1,Trinity_GG_7945_c0_g1_i5,blat.proc3825154.chain_2747,blat.proc3825154.chain_2748	6
scaffold_14	spliced_intron	10479149	10479292	+	asmbl_12324	none	blat.proc3825172.chain_2144	1	STRG.17398.2,STRG.17398.3,blat.proc3825172.chain_2141	3
scaffold_4	alt_acceptor	12629616	12629617	-	asmbl_42937,asmbl_42939	none	STRG.4902.1,blat.proc3825150.chain_1039,blat.proc3825150.chain_1040	3	STRG.4902.2,STRG.4902.3,blat.proc3825150.chain_1038	3
scaffold_4	retained_intron	16582373	16582576	+	asmbl_41982	none	Trinity_GG_20216_c0_g1_i2,blat.proc3825166.chain_1590	2	STRG.5234.1,Trinity_GG_20216_c0_g1_i1,blat.proc3825166.chain_1589	3
scaffold_20	retained_intron	11948483	11948577	-	asmbl_26205,asmbl_26206	none	STRG.23700.2,STRG.23700.3,blat.proc3825160.chain_680	3	blat.proc3825160.chain_681	1
scaffold_19	ends_in_intron	6182734	6182734	-	asmbl_22195	none	Trinity_GG_12354_c0_g1_i2,blat.proc3825158.chain_2988	2	STRG.22146.1,Trinity_GG_12354_c0_g1_i1,blat.proc3825158.chain_2987	3
scaffold_22	alt_acceptor	474170	474171	+	asmbl_29850	none	STRG.24691.1,Trinity_GG_30917_c1_g1_i1,blat.proc3825176.chain_1740	3	STRG.24691.2	1
scaffold_17	spliced_intron	13951302	13951602	-	asmbl_18389	none	STRG.20870.3	1	STRG.20870.1	1
scaffold_14	retained_intron	3159934	3160025	+	asmbl_11913,asmbl_11923,asmbl_11924	none	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	4	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	14
scaffold_12	retained_intron	12291139	12292234	-	asmbl_8854,asmbl_8855	none	STRG.15130.2,STRG.15130.4,Trinity_GG_8430_c0_g1_i4,Trinity_GG_8430_c1_g1_i1,blat.proc3825154.chain_3608,blat.proc3825154.chain_3609	6	STRG.15130.3,STRG.15130.5	2
scaffold_17	alt_acceptor	10000183	10000184	+	asmbl_19148,asmbl_19149	none	STRG.20614.1,blat.proc3825174.chain_1474,blat.proc3825174.chain_1475	3	STRG.20614.2	1
scaffold_26	retained_intron	4110627	4110718	+	asmbl_34860,asmbl_34861	none	STRG.28106.2,STRG.28106.3	2	STRG.28106.1,blat.proc3825178.chain_1160	2
scaffold_10	alt_acceptor	17348978	17348979	-	asmbl_5056	none	blat.proc3825154.chain_1786	1	blat.proc3825154.chain_1785	1
scaffold_19	spliced_intron	8755862	8756122	+	asmbl_21547	none	STRG.22336.1,blat.proc3825174.chain_3315	2	blat.proc3825174.chain_3316,blat.proc3825174.chain_3317	2
scaffold_28	spliced_intron	5228162	5228281	-	asmbl_38262,asmbl_38264	none	STRG.29674.2,blat.proc3825162.chain_2843	2	blat.proc3825162.chain_2844	1
scaffold_14	alternate_exon	12825680	12827132	-	asmbl_13614	none	STRG.17598.2,Trinity_GG_9905_c0_g1_i6,blat.proc3825156.chain_2459	3	STRG.17598.5	1
scaffold_7	retained_intron	11146814	11146910	+	asmbl_50153,asmbl_50154	none	blat.proc3825168.chain_1784,blat.proc3825168.chain_1786,blat.proc3825168.chain_1788	3	STRG.9262.1,STRG.9262.2,blat.proc3825168.chain_1785,blat.proc3825168.chain_1787,blat.proc3825168.chain_1789,blat.proc3825168.chain_1790,blat.proc3825168.chain_1791	7
scaffold_8	starts_in_intron	8747305	8747305	+	asmbl_53034	none	Trinity_GG_22946_c0_g1_i3,blat.proc3825168.chain_2693	2	STRG.10133.1,STRG.10133.2,blat.proc3825168.chain_2691,blat.proc3825168.chain_2692	4
scaffold_4	alt_acceptor	12694279	12694280	+	asmbl_41737	none	STRG.4908.1,Trinity_GG_20007_c0_g1_i2,blat.proc3825166.chain_1262	3	STRG.4908.2,Trinity_GG_20007_c0_g1_i1,blat.proc3825166.chain_1261	3
scaffold_14	spliced_intron	3165584	3165934	+	asmbl_11908,asmbl_11909,asmbl_11910	none	STRG.16908.3,STRG.16908.5,blat.proc3825172.chain_1613	3	STRG.16908.1,STRG.16908.4,blat.proc3825172.chain_1612	3
scaffold_3	alternate_exon	19803451	19803532	+	asmbl_40776	none	blat.proc3825166.chain_569	1	STRG.4097.2,STRG.4097.3,STRG.4097.4	3
scaffold_19	ends_in_intron	683342	683342	-	asmbl_21993	none	Trinity_GG_12189_c2_g1_i3,blat.proc3825158.chain_2698	2	STRG.21851.1,blat.proc3825158.chain_2697,blat.proc3825158.chain_2699	3
scaffold_6	spliced_intron	14197562	14197732	+	asmbl_47591	none	blat.proc3825168.chain_612	1	Trinity_GG_21766_c0_g1_i4,blat.proc3825168.chain_611	2
scaffold_17	alternate_exon	682831	683184	-	asmbl_17646	none	STRG.19921.2	1	STRG.19921.1,blat.proc3825158.chain_959	2
scaffold_25	spliced_intron	9338119	9338227	+	asmbl_33807,asmbl_33808	none	STRG.27762.1,blat.proc3825178.chain_877,blat.proc3825178.chain_879,blat.proc3825178.chain_882	4	blat.proc3825178.chain_878	1
scaffold_2	alt_donor	4774296	4774297	-	asmbl_23093	none	STRG.1897.1,blat.proc3825148.chain_1851	2	STRG.1897.2,blat.proc3825148.chain_1852	2
scaffold_13	retained_exon	8699291	8699329	+	asmbl_11140,asmbl_11142	none	STRG.16140.1,blat.proc3825172.chain_934,blat.proc3825172.chain_937	3	STRG.16140.2,blat.proc3825172.chain_936	2
scaffold_1	ends_in_intron	12759061	12759061	-	asmbl_761	none	blat.proc3825148.chain_844	1	STRG.897.1,STRG.897.2,blat.proc3825148.chain_843,blat.proc3825148.chain_845	4
scaffold_9	retained_intron	9648651	9648733	+	asmbl_54217	none	STRG.11340.2	1	STRG.11340.1,blat.proc3825170.chain_134	2
scaffold_3	alternate_exon	5751391	5751619	+	asmbl_40080	none	STRG.3240.2	1	STRG.3240.1,Trinity_GG_19095_c0_g1_i4,blat.proc3825164.chain_3412	3
scaffold_18	alternate_exon	7682122	7682381	+	asmbl_20786	none	STRG.21474.4	1	STRG.21474.1,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	5
scaffold_2	spliced_intron	2872107	2872884	-	asmbl_22933,asmbl_22944	none	STRG.1736.2,blat.proc3825148.chain_1661,blat.proc3825148.chain_1664	3	STRG.1736.1,blat.proc3825148.chain_1663,blat.proc3825148.chain_1665	3
scaffold_4	retained_intron	4911794	4911995	+	asmbl_41316,asmbl_41317	none	Trinity_GG_19752_c0_g1_i3,blat.proc3825166.chain_862,blat.proc3825166.chain_864	3	STRG.4387.1,STRG.4387.2,blat.proc3825166.chain_866	3
scaffold_1	spliced_intron	12407759	12407879	+	asmbl_2209	none	STRG.856.2,Trinity_GG_17800_c0_g1_i1,blat.proc3825164.chain_943	3	STRG.856.1,Trinity_GG_17800_c0_g1_i2,Trinity_GG_17800_c0_g1_i3,Trinity_GG_17800_c0_g1_i5,blat.proc3825164.chain_944,blat.proc3825164.chain_945,blat.proc3825164.chain_946	7
scaffold_13	skipped_exon	7268676	7269850	-	asmbl_9868,asmbl_9870	none	blat.proc3825156.chain_941,blat.proc3825156.chain_943	2	STRG.16029.1,blat.proc3825156.chain_939,blat.proc3825156.chain_940	3
scaffold_5	spliced_intron	18561228	18562070	+	asmbl_46268,asmbl_46269,asmbl_46273	none	STRG.6987.1,STRG.6987.3,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i7,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	8	STRG.6987.2,STRG.6987.4,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i15,Trinity_GG_21132_c0_g1_i3,blat.proc3825166.chain_3149,blat.proc3825166.chain_3150	7
scaffold_14	retained_intron	8371335	8371512	-	asmbl_13297	none	STRG.17270.2	1	STRG.17270.1,Trinity_GG_9648_c1_g1_i1,blat.proc3825156.chain_2017	3
scaffold_11	alternate_exon	4722979	4723022	+	asmbl_5503	none	STRG.13558.1	1	STRG.13558.2	1
scaffold_20	retained_intron	2079205	2079301	-	asmbl_25633	none	blat.proc3825158.chain_3703	1	STRG.22944.1,Trinity_GG_12755_c0_g1_i3,blat.proc3825158.chain_3702,blat.proc3825158.chain_3704	4
scaffold_17	alternate_exon	9022488	9022719	-	asmbl_18135	none	blat.proc3825158.chain_1546	1	STRG.20530.1	1
scaffold_18	starts_in_intron	2000972	2000972	-	asmbl_19686	none	blat.proc3825158.chain_2091	1	STRG.21105.1,STRG.21105.2,STRG.21105.3,blat.proc3825158.chain_2090	4
scaffold_22	starts_in_intron	6996135	6996135	-	asmbl_29368	none	blat.proc3825160.chain_2213	1	blat.proc3825160.chain_2212	1
scaffold_20	skipped_exon	7801873	7802642	-	asmbl_25920	none	STRG.23330.2	1	STRG.23330.1,blat.proc3825160.chain_447	2
scaffold_5	alternate_exon	19273975	19274199	+	asmbl_46312	none	STRG.7028.1,Trinity_GG_21182_c0_g1_i4,blat.proc3825166.chain_3243	3	STRG.7028.2,STRG.7028.4,Trinity_GG_21182_c0_g1_i3,blat.proc3825166.chain_3242	4
scaffold_7	retained_intron	5265960	5265992	-	asmbl_50877	none	STRG.8865.1,blat.proc3825152.chain_1316	2	STRG.8865.2	1
scaffold_9	retained_intron	16575074	16575191	+	asmbl_54607	none	STRG.11800.1,blat.proc3825170.chain_594	2	STRG.11800.3	1
scaffold_12	skipped_exon	14104916	14105373	-	asmbl_8975,asmbl_8976,asmbl_8978,asmbl_8979,asmbl_8980,asmbl_8981,asmbl_8982,asmbl_8984,asmbl_8985	none	STRG.15241.1,Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i17,Trinity_GG_8557_c0_g1_i4,Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_87,blat.proc3825156.chain_88,blat.proc3825156.chain_90,blat.proc3825156.chain_92,blat.proc3825156.chain_93,blat.proc3825156.chain_94,blat.proc3825156.chain_95,blat.proc3825156.chain_96,blat.proc3825156.chain_97	15	blat.proc3825156.chain_91	1
scaffold_17	alternate_exon	6181793	6182190	-	asmbl_17969	none	STRG.20293.1	1	STRG.20293.3	1
scaffold_14	spliced_intron	8212830	8213288	-	asmbl_13251,asmbl_13252,asmbl_13254,asmbl_13255,asmbl_13257,asmbl_13258,asmbl_13259	none	STRG.17234.1,STRG.17234.2,STRG.17234.3,STRG.17234.4,STRG.17234.5,blat.proc3825156.chain_2055,blat.proc3825156.chain_2056,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	9	blat.proc3825156.chain_2057	1
scaffold_7	alt_acceptor	8508685	8508686	+	asmbl_50006	none	blat.proc3825168.chain_1609	1	STRG.9078.1,blat.proc3825168.chain_1604	2
scaffold_2	retained_intron	14560511	14560637	+	asmbl_24949	none	Trinity_GG_18675_c0_g1_i21,blat.proc3825164.chain_2655	2	blat.proc3825164.chain_2659	1
scaffold_7	retained_intron	18945539	18945573	-	asmbl_51506	none	blat.proc3825152.chain_2041	1	STRG.9695.2	1
scaffold_23	alt_acceptor	10212380	10212381	+	asmbl_31839,asmbl_31840,asmbl_31841	none	STRG.26229.1,STRG.26229.2,blat.proc3825176.chain_3227,blat.proc3825176.chain_3229,blat.proc3825176.chain_3230	5	STRG.26229.3,blat.proc3825176.chain_3231	2
scaffold_4	starts_in_intron	17122600	17122600	-	asmbl_43256	none	blat.proc3825150.chain_1485	1	STRG.5310.1,STRG.5310.2,STRG.5310.3,STRG.5310.4,Trinity_GG_2967_c0_g1_i1,Trinity_GG_2967_c0_g1_i2	6
scaffold_5	alt_acceptor	8411348	8411349	+	asmbl_45551	none	STRG.6187.2	1	STRG.6187.1,STRG.6187.3,blat.proc3825166.chain_2304,blat.proc3825166.chain_2305,blat.proc3825166.chain_2306,blat.proc3825166.chain_2307	6
scaffold_16	skipped_exon	7227132	7228890	-	asmbl_17177	none	STRG.19399.3	1	STRG.19399.1,STRG.19399.2	2
scaffold_25	alt_acceptor	9046624	9046625	-	asmbl_34481	none	blat.proc3825162.chain_1111	1	STRG.27715.1,STRG.27715.2,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106	4
scaffold_19	alternate_exon	2780621	2780818	+	asmbl_21282	none	STRG.21962.5	1	STRG.21962.2	1
scaffold_5	ends_in_intron	6587406	6587406	-	asmbl_44104	none	Trinity_GG_3404_c0_g1_i5,blat.proc3825150.chain_2260	2	blat.proc3825150.chain_2257,blat.proc3825150.chain_2258,blat.proc3825150.chain_2261	3
scaffold_1	skipped_exon	6496620	6497024	-	asmbl_363	none	STRG.449.2	1	blat.proc3825148.chain_353	1
scaffold_2	skipped_exon	14271302	14274032	+	asmbl_24897,asmbl_24898,asmbl_24904	none	STRG.2428.1,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596,blat.proc3825164.chain_2597	4	STRG.2428.2,blat.proc3825164.chain_2591	2
scaffold_7	alt_acceptor	13960457	13960458	+	asmbl_50390,asmbl_50393	none	STRG.9495.1,Trinity_GG_22592_c0_g1_i2,blat.proc3825168.chain_2024,blat.proc3825168.chain_2026,blat.proc3825168.chain_2028	5	STRG.9495.2,STRG.9495.3,blat.proc3825168.chain_2027	3
scaffold_11	retained_intron	15687955	15688379	-	asmbl_7210	none	Trinity_GG_8003_c0_g1_i1,Trinity_GG_8003_c0_g1_i3,blat.proc3825154.chain_2849,blat.proc3825154.chain_2850	4	STRG.14309.1,blat.proc3825154.chain_2851	2
scaffold_25	alt_acceptor	3084205	3084206	-	asmbl_34088,asmbl_34089,asmbl_34090,asmbl_34092,asmbl_34093	none	STRG.27251.2,STRG.27251.3,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555	5	STRG.27251.1	1
scaffold_28	retained_intron	5024248	5024400	+	asmbl_37566	none	STRG.29654.4,Trinity_GG_33717_c2_g1_i2,blat.proc3825178.chain_2769	3	STRG.29654.1,STRG.29654.2,blat.proc3825178.chain_2770	3
scaffold_22	retained_intron	11343600	11343820	-	asmbl_29665	none	Trinity_GG_14255_c0_g1_i1,blat.proc3825160.chain_2649	2	STRG.25465.2,blat.proc3825160.chain_2647	2
scaffold_5	alt_acceptor	8910806	8910807	-	asmbl_44255	none	STRG.6230.2,blat.proc3825150.chain_2440	2	STRG.6230.1,blat.proc3825150.chain_2439	2
scaffold_18	retained_intron	1903420	1904370	-	asmbl_19653,asmbl_19654	none	STRG.21081.10,Trinity_GG_11794_c0_g2_i1,Trinity_GG_11794_c2_g1_i1,blat.proc3825158.chain_2020,blat.proc3825158.chain_2022	5	STRG.21081.6,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014	3
scaffold_28	retained_exon	3732181	3732446	-	asmbl_38171	none	STRG.29587.3	1	blat.proc3825162.chain_2739	1
scaffold_6	ends_in_intron	16063228	16063228	-	asmbl_49102	none	blat.proc3825152.chain_776	1	STRG.8341.1,blat.proc3825152.chain_777	2
scaffold_18	alt_donor	8913422	8913423	-	asmbl_20045	none	STRG.21558.4,blat.proc3825158.chain_2447	2	STRG.21558.1,blat.proc3825158.chain_2453	2
scaffold_24	alternate_exon	5309278	5311809	-	asmbl_32893	none	STRG.26618.1,blat.proc3825160.chain_3748	2	Trinity_GG_14889_c0_g1_i2,blat.proc3825160.chain_3749	2
scaffold_24	ends_in_intron	161810	161810	-	asmbl_32699	none	STRG.26320.2	1	STRG.26320.1,Trinity_GG_14715_c1_g1_i1,blat.proc3825160.chain_3450	3
scaffold_17	retained_exon	7849410	7849473	+	asmbl_18924	none	STRG.20411.1	1	STRG.20411.2	1
scaffold_13	alternate_exon	16368185	16368397	-	asmbl_10296	none	STRG.16690.1,blat.proc3825156.chain_1483	2	STRG.16690.2,blat.proc3825156.chain_1484	2
scaffold_22	spliced_intron	4368173	4368545	+	asmbl_29996	none	STRG.24856.1,blat.proc3825176.chain_1960	2	STRG.24856.2,Trinity_GG_31049_c0_g1_i1,blat.proc3825176.chain_1959	3
scaffold_3	alt_donor	3322931	3322932	-	asmbl_38772,asmbl_38774	none	STRG.3080.1,blat.proc3825148.chain_2945,blat.proc3825148.chain_2946	3	STRG.3080.2,blat.proc3825148.chain_2947	2
scaffold_28	alt_donor	6515562	6515563	-	asmbl_38350	none	blat.proc3825162.chain_2874	1	STRG.29749.2	1
scaffold_2	alt_donor	6517311	6517312	+	asmbl_24472,asmbl_24477	none	STRG.2022.1,STRG.2022.2,Trinity_GG_18449_c0_g1_i2	3	STRG.2022.3,STRG.2022.4	2
scaffold_26	alt_acceptor	3338979	3338980	-	asmbl_35483	none	STRG.28013.1	1	STRG.28013.2,STRG.28013.3,blat.proc3825162.chain_1262	3
scaffold_20	alt_acceptor	11733012	11733013	+	asmbl_27094	none	STRG.23677.2	1	STRG.23677.1,blat.proc3825176.chain_904	2
scaffold_5	alt_acceptor	18713891	18713892	-	asmbl_44865,asmbl_44866	none	STRG.6999.2,STRG.6999.3,Trinity_GG_3901_c0_g1_i2,blat.proc3825150.chain_3112	4	STRG.6999.1,Trinity_GG_3901_c0_g1_i1,blat.proc3825150.chain_3113	3
scaffold_111	starts_in_intron	14628	14628	-	asmbl_7390	none	blat.proc3825162.chain_3314	1	STRG.30158.1,blat.proc3825162.chain_3315	2
scaffold_18	alternate_exon	10414911	10415183	-	asmbl_20113	none	STRG.21642.1,blat.proc3825158.chain_2544	2	STRG.21642.2,blat.proc3825158.chain_2543	2
scaffold_17	retained_intron	8951543	8951643	+	asmbl_19049	none	blat.proc3825174.chain_1375	1	STRG.20514.1,blat.proc3825174.chain_1376	2
scaffold_12	alt_acceptor	2768472	2768473	+	asmbl_7525	none	STRG.14523.1,blat.proc3825170.chain_3028	2	blat.proc3825170.chain_3027	1
scaffold_25	skipped_exon	8697800	8700439	-	asmbl_34462	none	STRG.27695.3,blat.proc3825162.chain_1023	2	STRG.27695.2,blat.proc3825162.chain_1020	2
scaffold_6	spliced_intron	11482302	11482747	+	asmbl_47333	none	STRG.7943.4	1	STRG.7943.2,blat.proc3825168.chain_309	2
scaffold_17	alt_donor	936345	936346	+	asmbl_18578,asmbl_18579	none	STRG.19937.1,STRG.19937.2,blat.proc3825174.chain_818,blat.proc3825174.chain_819	4	STRG.19937.3	1
scaffold_27	alternate_exon	4804807	4807619	+	asmbl_36319	none	STRG.28926.1,blat.proc3825178.chain_2140	2	blat.proc3825178.chain_2141,blat.proc3825178.chain_2142	2
scaffold_5	alternate_exon	6912109	6912505	+	asmbl_45456	none	STRG.6104.1,Trinity_GG_20627_c0_g1_i4,blat.proc3825166.chain_2284	3	STRG.6104.2,blat.proc3825166.chain_2287	2
scaffold_13	retained_intron	9223165	9223239	+	asmbl_11177	none	STRG.16181.1,blat.proc3825172.chain_875	2	STRG.16181.2	1
scaffold_27	starts_in_intron	341573	341573	-	asmbl_36674	none	blat.proc3825162.chain_1740	1	STRG.28561.1,STRG.28561.2,STRG.28561.3,blat.proc3825162.chain_1741,blat.proc3825162.chain_1742,blat.proc3825162.chain_1743	6
scaffold_20	spliced_intron	10069728	10069888	-	asmbl_26077,asmbl_26078	none	STRG.23549.1,STRG.23549.2,blat.proc3825160.chain_633,blat.proc3825160.chain_634	4	Trinity_GG_13135_c0_g1_i2,blat.proc3825160.chain_632	2
scaffold_500	retained_intron	2522	2745	+	asmbl_46488,asmbl_46489,asmbl_46493	none	STRG.30357.1,STRG.30357.4,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445,blat.proc3825178.chain_3446	5	STRG.30357.3,STRG.30357.5,blat.proc3825178.chain_3440	3
scaffold_3	ends_in_intron	11329314	11329314	+	asmbl_40345	none	Trinity_GG_19303_c0_g1_i2,blat.proc3825166.chain_41	2	STRG.3564.1,Trinity_GG_19303_c0_g1_i1,blat.proc3825166.chain_42	3
scaffold_13	spliced_intron	16138003	16138117	+	asmbl_11556	none	STRG.16653.2	1	STRG.16653.3,Trinity_GG_26492_c0_g1_i1	2
scaffold_8	alt_acceptor	14147816	14147817	-	asmbl_52299	none	STRG.10522.2,blat.proc3825152.chain_2758	2	STRG.10522.1,STRG.10522.3,blat.proc3825152.chain_2757	3
scaffold_21	starts_in_intron	10965460	10965460	+	asmbl_28903	none	Trinity_GG_30885_c0_g1_i1,blat.proc3825176.chain_1686	2	STRG.24574.1,STRG.24574.3,Trinity_GG_30885_c0_g1_i4,blat.proc3825176.chain_1688	4
scaffold_4	spliced_intron	14648132	14648297	-	asmbl_43062,asmbl_43063,asmbl_43066	none	STRG.5090.1,STRG.5090.2,blat.proc3825150.chain_1236,blat.proc3825150.chain_1237,blat.proc3825150.chain_1238	5	STRG.5090.3,Trinity_GG_2818_c0_g1_i4,blat.proc3825150.chain_1239	3
scaffold_22	alternate_exon	761423	761456	+	asmbl_29892	none	STRG.24731.2	1	STRG.24731.1,Trinity_GG_30987_c0_g1_i1,blat.proc3825176.chain_1865	3
scaffold_4	ends_in_intron	19506410	19506410	-	asmbl_43443	none	blat.proc3825150.chain_1725	1	blat.proc3825150.chain_1726	1
scaffold_25	alternate_exon	6298614	6298920	-	asmbl_34343,asmbl_34344	none	STRG.27514.1,blat.proc3825162.chain_902,blat.proc3825162.chain_903	3	blat.proc3825162.chain_904	1
scaffold_27	starts_in_intron	4527988	4527988	+	asmbl_36304	none	Trinity_GG_33335_c3_g1_i1,blat.proc3825178.chain_2162	2	STRG.28906.1,STRG.28906.2,blat.proc3825178.chain_2159	3
scaffold_24	spliced_intron	3655857	3656169	+	asmbl_32149	none	STRG.26550.2,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463	3	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3
scaffold_25	retained_intron	9043482	9043880	-	asmbl_34476,asmbl_34479	none	STRG.27715.3,Trinity_GG_15563_c0_g1_i1,blat.proc3825162.chain_1105,blat.proc3825162.chain_1107,blat.proc3825162.chain_1110	5	STRG.27715.1,STRG.27715.2,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106	4
scaffold_1	alt_acceptor	858320	858321	-	asmbl_28	none	blat.proc3825148.chain_42	1	STRG.44.1,STRG.44.2,blat.proc3825148.chain_41,blat.proc3825148.chain_43,blat.proc3825148.chain_44	5
scaffold_3	alternate_exon	6182565	6182663	-	asmbl_38908,asmbl_38910,asmbl_38911	none	STRG.3266.1,STRG.3266.2,STRG.3266.4,blat.proc3825148.chain_3119,blat.proc3825148.chain_3125	5	STRG.3266.5,blat.proc3825148.chain_3121,blat.proc3825148.chain_3123	3
scaffold_17	retained_exon	1665736	1665886	+	asmbl_18620,asmbl_18622	none	STRG.20000.1,blat.proc3825174.chain_887,blat.proc3825174.chain_888	3	STRG.20000.2,blat.proc3825174.chain_889	2
scaffold_15	spliced_intron	9638324	9639423	-	asmbl_14390	none	blat.proc3825156.chain_3249	1	Trinity_GG_10347_c2_g1_i14,blat.proc3825156.chain_3254	2
scaffold_15	starts_in_intron	7281461	7281461	+	asmbl_15280	none	Trinity_GG_27352_c0_g1_i1,blat.proc3825172.chain_2980	2	STRG.18322.1,blat.proc3825172.chain_2981	2
scaffold_8	starts_in_intron	6809345	6809345	-	asmbl_51890	none	blat.proc3825152.chain_2306	1	STRG.10044.1,STRG.10044.3,blat.proc3825152.chain_2305	3
scaffold_20	retained_intron	5928434	5928707	-	asmbl_25794	none	Trinity_GG_12942_c0_g1_i3,Trinity_GG_12942_c0_g1_i4,blat.proc3825160.chain_282,blat.proc3825160.chain_283	4	STRG.23198.1,STRG.23198.2,blat.proc3825160.chain_284,blat.proc3825160.chain_285	4
scaffold_21	ends_in_intron	7429510	7429510	-	asmbl_27816	none	blat.proc3825160.chain_1421	1	STRG.24268.1,blat.proc3825160.chain_1422	2
scaffold_12	retained_intron	10187622	10187770	-	asmbl_8737	none	blat.proc3825154.chain_3519	1	STRG.14994.4,blat.proc3825154.chain_3518	2
scaffold_18	alt_donor	7944082	7944083	-	asmbl_19987,asmbl_19989	none	STRG.21493.1,STRG.21493.3	2	STRG.21493.2	1
scaffold_7	starts_in_intron	6035692	6035692	+	asmbl_49837	none	Trinity_GG_22211_c1_g1_i1,blat.proc3825168.chain_1383	2	STRG.8909.1,Trinity_GG_22211_c0_g1_i1,Trinity_GG_22211_c0_g1_i3,blat.proc3825168.chain_1380,blat.proc3825168.chain_1381	5
scaffold_8	alternate_exon	16503929	16504493	-	asmbl_52422	none	STRG.10629.2	1	STRG.10629.4,STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2931,blat.proc3825152.chain_2934,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	8
scaffold_25	alt_acceptor	4877161	4877162	+	asmbl_33542	none	STRG.27423.2	1	STRG.27423.1,Trinity_GG_32416_c0_g2_i3,blat.proc3825178.chain_501	3
scaffold_9	retained_exon	645691	645735	+	asmbl_53784	none	STRG.10793.4	1	STRG.10793.3	1
scaffold_3	alternate_exon	9515532	9516757	+	asmbl_40226,asmbl_40227	none	STRG.3436.1,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3676,blat.proc3825164.chain_3678	5	blat.proc3825164.chain_3673	1
scaffold_14	starts_in_intron	12221116	12221116	-	asmbl_13556	none	blat.proc3825156.chain_2379	1	STRG.17553.1	1
scaffold_11	alternate_exon	8790382	8790429	-	asmbl_6874	none	blat.proc3825170.chain_2482,blat.proc3825170.chain_2483	2	STRG.13904.2	1
scaffold_3	alternate_exon	3247287	3249029	+	asmbl_39948	none	STRG.3072.5	1	STRG.3072.6,Trinity_GG_19083_c2_g1_i1,blat.proc3825164.chain_3396	3
scaffold_10	spliced_intron	3078017	3078168	+	asmbl_3027	none	STRG.12131.1,blat.proc3825170.chain_816	2	blat.proc3825170.chain_817	1
scaffold_28	alt_acceptor	1641661	1641662	+	asmbl_37317	none	STRG.29352.3	1	STRG.29352.1,STRG.29352.2,blat.proc3825178.chain_2562,blat.proc3825178.chain_2563	4
scaffold_4	starts_in_intron	5236590	5236590	-	asmbl_42579	none	Trinity_GG_2417_c0_g1_i2,blat.proc3825150.chain_554	2	STRG.4417.2,blat.proc3825150.chain_553	2
scaffold_13	starts_in_intron	9340711	9340711	+	asmbl_11196	none	Trinity_GG_26202_c0_g1_i1,blat.proc3825172.chain_962	2	STRG.16202.1	1
scaffold_9	retained_exon	9614424	9614495	-	asmbl_55216	none	STRG.11330.3,blat.proc3825152.chain_3606	2	STRG.11330.2	1
scaffold_1	retained_intron	12453468	12453687	+	asmbl_2226	none	blat.proc3825164.chain_1034	1	STRG.860.1,blat.proc3825164.chain_1032,blat.proc3825164.chain_1033	3
scaffold_26	starts_in_intron	6349600	6349600	-	asmbl_35679	none	blat.proc3825162.chain_1568	1	STRG.28335.1,STRG.28335.2,STRG.28335.3,STRG.28335.4,STRG.28335.5,STRG.28335.6,blat.proc3825162.chain_1569,blat.proc3825162.chain_1570	8
scaffold_17	alternate_exon	10054837	10054885	-	asmbl_18228,asmbl_18230	none	STRG.20621.1,blat.proc3825158.chain_1671,blat.proc3825158.chain_1672	3	STRG.20621.2	1
scaffold_12	ends_in_intron	9979278	9979278	-	asmbl_8707	none	blat.proc3825154.chain_3471	1	STRG.14971.1,blat.proc3825154.chain_3472	2
scaffold_2	spliced_intron	15271745	15272034	+	asmbl_25010,asmbl_25011,asmbl_25015,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621,blat.proc3825164.chain_2622	9	blat.proc3825164.chain_2620	1
scaffold_13	alt_donor	9535353	9535354	-	asmbl_10030,asmbl_10031,asmbl_10033,asmbl_10034	none	STRG.16216.1,STRG.16216.3,STRG.16216.4,STRG.16216.5,blat.proc3825156.chain_1123,blat.proc3825156.chain_1124	6	STRG.16216.2	1
scaffold_26	retained_intron	6320095	6320279	-	asmbl_35672,asmbl_35673	none	STRG.28328.1,STRG.28328.2,blat.proc3825162.chain_1492	3	STRG.28328.3,blat.proc3825162.chain_1491	2
scaffold_1	retained_intron	4864390	4864489	-	asmbl_217	none	STRG.292.1,blat.proc3825148.chain_258	2	STRG.292.2,blat.proc3825148.chain_256	2
scaffold_4	retained_exon	16802877	16804247	-	asmbl_43214,asmbl_43215	none	STRG.5268.1,STRG.5268.2,blat.proc3825150.chain_1428	3	Trinity_GG_2936_c0_g1_i1,blat.proc3825150.chain_1429	2
scaffold_3	alternate_exon	1556799	1560384	-	asmbl_38721	none	STRG.2986.2	1	STRG.2986.1,blat.proc3825148.chain_2849,blat.proc3825148.chain_2852	3
scaffold_24	alt_acceptor	162380	162381	-	asmbl_32697	none	STRG.26320.1	1	STRG.26320.2,Trinity_GG_14715_c0_g1_i3,blat.proc3825160.chain_3447	3
scaffold_23	retained_intron	7045280	7045597	-	asmbl_31013	none	Trinity_GG_14529_c0_g1_i2,blat.proc3825160.chain_3125	2	STRG.26031.1,blat.proc3825160.chain_3124	2
scaffold_17	alt_donor	14040941	14040942	+	asmbl_19380	none	STRG.20874.2	1	STRG.20874.3	1
scaffold_7	starts_in_intron	3414151	3414151	-	asmbl_50796	none	STRG.8752.2	1	blat.proc3825152.chain_1246	1
scaffold_2	alt_acceptor	15488555	15488556	+	asmbl_25053,asmbl_25056,asmbl_25057	none	STRG.2506.2,STRG.2506.4,blat.proc3825164.chain_2791,blat.proc3825164.chain_2794	4	STRG.2506.1,STRG.2506.3,blat.proc3825164.chain_2792,blat.proc3825164.chain_2793	4
scaffold_1	retained_exon	11821553	11821589	+	asmbl_2153	none	STRG.801.2,Trinity_GG_17822_c0_g1_i3,blat.proc3825164.chain_987	3	STRG.801.1,Trinity_GG_17822_c0_g1_i1,blat.proc3825164.chain_986	3
scaffold_28	alt_acceptor	5241996	5241997	+	asmbl_37576,asmbl_37577	none	STRG.29677.1,Trinity_GG_33753_c0_g1_i1,Trinity_GG_33753_c0_g1_i3,blat.proc3825178.chain_2846,blat.proc3825178.chain_2848	5	STRG.29677.3	1
scaffold_6	alternate_exon	2480048	2482547	-	asmbl_48131	none	STRG.7245.3	1	STRG.7245.2	1
scaffold_3	alt_acceptor	7917839	7917840	-	asmbl_38997,asmbl_38999	none	STRG.3377.2,STRG.3377.3	2	STRG.3377.1,STRG.3377.4	2
scaffold_10	retained_intron	3065795	3066072	-	asmbl_4158	none	blat.proc3825154.chain_666	1	STRG.12130.1,blat.proc3825154.chain_664	2
scaffold_17	retained_intron	8626201	8626531	+	asmbl_19010	none	STRG.20477.2,Trinity_GG_28498_c0_g1_i3,blat.proc3825174.chain_1275	3	STRG.20477.1,Trinity_GG_28498_c0_g1_i1,Trinity_GG_28498_c0_g1_i2,blat.proc3825174.chain_1274,blat.proc3825174.chain_1276	5
scaffold_10	ends_in_intron	8341491	8341491	-	asmbl_4587	none	Trinity_GG_7048_c0_g1_i2,blat.proc3825154.chain_1217	2	STRG.12600.1,blat.proc3825154.chain_1218	2
scaffold_21	alt_acceptor	10965497	10965498	+	asmbl_28904	none	STRG.24574.3	1	STRG.24574.1,Trinity_GG_30885_c0_g1_i4,blat.proc3825176.chain_1688	3
scaffold_2	alternate_exon	17602403	17602439	+	asmbl_25183	none	Trinity_GG_18796_c0_g1_i2,blat.proc3825164.chain_2906	2	STRG.2647.1,blat.proc3825164.chain_2907	2
scaffold_11	ends_in_intron	1145425	1145425	+	asmbl_5323	none	blat.proc3825170.chain_1853	1	STRG.13310.1,STRG.13310.2,blat.proc3825170.chain_1852	3
scaffold_7	alternate_exon	8172976	8173173	+	asmbl_49961	none	Trinity_GG_22317_c0_g1_i1,blat.proc3825168.chain_1532	2	STRG.9049.1,blat.proc3825168.chain_1534	2
scaffold_13	alt_acceptor	6949076	6949077	-	asmbl_9820	none	STRG.15984.5	1	STRG.15984.2,STRG.15984.3,STRG.15984.4	3
scaffold_18	spliced_intron	1886374	1887983	-	asmbl_19653,asmbl_19657,asmbl_19658,asmbl_19661,asmbl_19662	none	STRG.21081.1,blat.proc3825158.chain_2010,blat.proc3825158.chain_2013,blat.proc3825158.chain_2018	4	STRG.21081.6	1
scaffold_19	spliced_intron	11475869	11475988	-	asmbl_22399	none	STRG.22483.3	1	STRG.22483.1,STRG.22483.2	2
scaffold_7	starts_in_intron	12270073	12270073	+	asmbl_50233,asmbl_50234	none	STRG.9326.5,STRG.9326.6,Trinity_GG_22467_c2_g1_i1,blat.proc3825168.chain_1808	4	STRG.9326.2,STRG.9326.3,STRG.9326.4,Trinity_GG_22467_c0_g1_i1,Trinity_GG_22467_c0_g1_i3,Trinity_GG_22467_c0_g1_i4,Trinity_GG_22467_c0_g1_i5,blat.proc3825168.chain_1798,blat.proc3825168.chain_1801,blat.proc3825168.chain_1802,blat.proc3825168.chain_1806	11
scaffold_7	retained_exon	5424137	5424184	-	asmbl_50887	none	STRG.8876.2	1	STRG.8876.1	1
scaffold_16	alt_acceptor	787931	787932	+	asmbl_16049,asmbl_16052	none	STRG.19056.2,blat.proc3825172.chain_3647	2	STRG.19056.1,blat.proc3825172.chain_3646,blat.proc3825172.chain_3648,blat.proc3825172.chain_3649	4
scaffold_27	retained_intron	3297546	3297880	-	asmbl_36906	none	STRG.28810.1,Trinity_GG_16152_c1_g1_i1,blat.proc3825162.chain_2061	3	STRG.28810.2	1
scaffold_24	retained_intron	9120008	9120346	+	asmbl_32507,asmbl_32511,asmbl_32514	none	Trinity_GG_32221_c0_g1_i2,blat.proc3825178.chain_171,blat.proc3825178.chain_175,blat.proc3825178.chain_180	4	STRG.26942.1,Trinity_GG_32221_c0_g1_i8,Trinity_GG_32221_c0_g1_i9,blat.proc3825178.chain_170,blat.proc3825178.chain_173,blat.proc3825178.chain_174,blat.proc3825178.chain_176,blat.proc3825178.chain_177,blat.proc3825178.chain_178,blat.proc3825178.chain_179	10
scaffold_19	retained_intron	8755862	8756122	+	asmbl_21550,asmbl_21551	none	blat.proc3825174.chain_3316,blat.proc3825174.chain_3317	2	STRG.22336.1,blat.proc3825174.chain_3315	2
scaffold_26	alt_acceptor	5150598	5150599	+	asmbl_34965	none	STRG.28221.1	1	Trinity_GG_32895_c0_g1_i1,blat.proc3825178.chain_1290	2
scaffold_11	retained_intron	13253413	13253723	-	asmbl_7124,asmbl_7125,asmbl_7127,asmbl_7128	none	STRG.14198.1,STRG.14198.4,blat.proc3825154.chain_2769,blat.proc3825154.chain_2772,blat.proc3825154.chain_2773	5	blat.proc3825154.chain_2770	1
scaffold_12	retained_intron	14988995	14989423	-	asmbl_9027	none	Trinity_GG_8566_c0_g1_i6,blat.proc3825156.chain_115	2	STRG.15298.1,STRG.15298.2,STRG.15298.3,Trinity_GG_8566_c0_g1_i1,Trinity_GG_8566_c0_g1_i2,Trinity_GG_8566_c0_g1_i4,blat.proc3825156.chain_116,blat.proc3825156.chain_118,blat.proc3825156.chain_119	9
scaffold_4	retained_exon	4922781	4922890	+	asmbl_41319,asmbl_41321	none	STRG.4388.1,blat.proc3825166.chain_869,blat.proc3825166.chain_870	3	STRG.4388.2	1
scaffold_2	spliced_intron	883173	884775	+	asmbl_24126	none	STRG.1564.3	1	STRG.1564.2	1
scaffold_10	starts_in_intron	1490620	1490620	-	asmbl_4066	none	blat.proc3825154.chain_514	1	STRG.12025.1,STRG.12025.2,STRG.12025.3,blat.proc3825154.chain_512,blat.proc3825154.chain_513	5
scaffold_5	alt_acceptor	16583734	16583735	-	asmbl_44761	none	STRG.6850.2	1	blat.proc3825150.chain_3026,blat.proc3825150.chain_3027,blat.proc3825150.chain_3028	3
scaffold_28	skipped_exon	3389665	3390454	+	asmbl_37480,asmbl_37482	none	STRG.29559.1,STRG.29559.3	2	STRG.29559.2	1
scaffold_13	alt_donor	6951099	6951100	-	asmbl_9819,asmbl_9820,asmbl_9822,asmbl_9823	none	STRG.15984.2,STRG.15984.3,STRG.15984.5,STRG.15984.6	4	STRG.15984.4	1
scaffold_8	alternate_exon	4081394	4084347	+	asmbl_52810,asmbl_52811	none	blat.proc3825168.chain_2480,blat.proc3825168.chain_2481	2	blat.proc3825168.chain_2484	1
scaffold_23	starts_in_intron	7276132	7276132	-	asmbl_31023	none	blat.proc3825160.chain_3142	1	STRG.26052.1,STRG.26052.2,STRG.26052.3,STRG.26052.4,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	6
scaffold_25	ends_in_intron	2091804	2091804	-	asmbl_34062	none	STRG.27219.3	1	STRG.27219.1	1
scaffold_14	skipped_exon	7564739	7566078	-	asmbl_13225	none	STRG.17202.1,blat.proc3825156.chain_2010	2	STRG.17202.2	1
scaffold_2	spliced_intron	14021578	14021829	+	asmbl_24871	none	STRG.2398.2	1	blat.proc3825164.chain_2575	1
scaffold_6	alt_donor	13871424	13871425	+	asmbl_47541	none	STRG.8133.1,Trinity_GG_21790_c0_g1_i3,Trinity_GG_4651_c0_g1_i1,blat.proc3825152.chain_605,blat.proc3825168.chain_639	5	STRG.8133.2,blat.proc3825152.chain_603,blat.proc3825168.chain_640	3
scaffold_28	retained_intron	5611216	5611353	-	asmbl_38298,asmbl_38300,asmbl_38302,asmbl_38303	none	STRG.29697.1,STRG.29697.4,STRG.29697.5,blat.proc3825162.chain_2899,blat.proc3825162.chain_2901	5	STRG.29697.2,STRG.29697.6,Trinity_GG_16664_c0_g1_i9,blat.proc3825162.chain_2897	4
scaffold_7	starts_in_intron	12057334	12057334	+	asmbl_50210	none	Trinity_GG_22476_c0_g1_i2,blat.proc3825168.chain_1823,blat.proc3825168.chain_1827	3	STRG.9307.1	1
scaffold_5	retained_intron	4696384	4696509	+	asmbl_45287	none	STRG.5925.1	1	STRG.5925.3	1
scaffold_25	alt_donor	3705265	3705266	-	asmbl_34146	none	STRG.27317.2,blat.proc3825162.chain_684	2	STRG.27317.1,blat.proc3825162.chain_683	2
scaffold_13	alt_donor	3355544	3355545	-	asmbl_9535,asmbl_9536	none	STRG.15647.1,blat.proc3825156.chain_528,blat.proc3825156.chain_529	3	STRG.15647.2	1
scaffold_11	alt_acceptor	8426466	8426467	+	asmbl_5770,asmbl_5778	none	STRG.13861.1,STRG.13861.2	2	Trinity_GG_24892_c0_g1_i2,Trinity_GG_24892_c0_g1_i3,blat.proc3825170.chain_2299,blat.proc3825170.chain_2301	4
scaffold_12	alt_donor	5566507	5566508	-	asmbl_8506	none	STRG.14712.2,blat.proc3825154.chain_3200	2	STRG.14712.1,blat.proc3825154.chain_3199	2
scaffold_13	alt_acceptor	8289223	8289224	+	asmbl_11114	none	STRG.16120.1,blat.proc3825172.chain_887	2	STRG.16120.2	1
scaffold_23	ends_in_intron	7916246	7916246	-	asmbl_31059	none	STRG.26100.4	1	STRG.26100.2,blat.proc3825160.chain_3255	2
scaffold_17	alt_donor	2631018	2631019	+	asmbl_18669,asmbl_18670,asmbl_18675,asmbl_18676	none	STRG.20060.2,STRG.20060.3,STRG.20060.4,Trinity_GG_28292_c0_g1_i1,Trinity_GG_28292_c0_g1_i3,blat.proc3825174.chain_926,blat.proc3825174.chain_928,blat.proc3825174.chain_929	8	STRG.20060.1	1
scaffold_18	alt_acceptor	5788077	5788078	+	asmbl_20602	none	STRG.21328.1,Trinity_GG_29065_c0_g1_i3,Trinity_GG_29065_c0_g1_i6,blat.proc3825174.chain_2313,blat.proc3825174.chain_2315	5	STRG.21328.2,blat.proc3825174.chain_2314	2
scaffold_11	alternate_exon	16252477	16256272	+	asmbl_6145	none	STRG.14327.2	1	STRG.14327.1,Trinity_GG_25170_c1_g1_i1,blat.proc3825170.chain_2793	3
scaffold_8	retained_intron	16278978	16279098	-	asmbl_52380	none	STRG.10619.2,blat.proc3825152.chain_2813	2	STRG.10619.1,blat.proc3825152.chain_2812	2
scaffold_16	alternate_exon	154994	155034	-	asmbl_16842	none	Trinity_GG_10685_c0_g1_i9	1	STRG.19010.1,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i8	3
scaffold_13	retained_intron	360693	360785	-	asmbl_9312,asmbl_9313	none	Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g2_i1,blat.proc3825156.chain_298,blat.proc3825156.chain_301	4	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,STRG.15442.5,Trinity_GG_8663_c0_g1_i10,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i22,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_294,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_297,blat.proc3825156.chain_300	15
scaffold_11	skipped_exon	11640396	11641468	+	asmbl_5982	none	STRG.14090.2	1	STRG.14090.1,blat.proc3825170.chain_2633,blat.proc3825170.chain_2639	3
scaffold_17	alt_donor	7467331	7467332	+	asmbl_18907	none	STRG.20396.2	1	STRG.20396.1,blat.proc3825174.chain_1211	2
scaffold_19	alternate_exon	3679856	3683128	+	asmbl_21333,asmbl_21334	none	STRG.22058.1,STRG.22058.3	2	STRG.22058.5	1
scaffold_11	alternate_exon	14179465	14181181	-	asmbl_7158	none	STRG.14239.1,blat.proc3825154.chain_2760	2	STRG.14239.2,blat.proc3825154.chain_2761	2
scaffold_13	alt_donor	4342957	4342958	+	asmbl_10783	none	STRG.15762.2	1	STRG.15762.1,blat.proc3825172.chain_472	2
scaffold_6	alt_donor	8641700	8641701	+	asmbl_47168,asmbl_47169,asmbl_47170	none	STRG.7754.1,blat.proc3825168.chain_188,blat.proc3825168.chain_189,blat.proc3825168.chain_190	4	STRG.7754.2,STRG.7754.3	2
scaffold_4	retained_intron	4117926	4118044	-	asmbl_42492	none	Trinity_GG_2411_c0_g1_i2,blat.proc3825150.chain_547	2	blat.proc3825150.chain_546	1
scaffold_4	alternate_exon	5190556	5190682	-	asmbl_42561,asmbl_42563	none	STRG.4410.3,STRG.4410.4,blat.proc3825150.chain_644	3	STRG.4410.1,blat.proc3825150.chain_643	2
scaffold_13	alt_acceptor	16460036	16460037	-	asmbl_10300,asmbl_10301,asmbl_10302	none	STRG.16703.1,STRG.16703.3,Trinity_GG_9330_c0_g1_i3,Trinity_GG_9330_c0_g1_i5,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1487,blat.proc3825156.chain_1488,blat.proc3825156.chain_1489	8	STRG.16703.4,blat.proc3825156.chain_1485	2
scaffold_3	starts_in_intron	5262993	5262993	-	asmbl_38842	none	Trinity_GG_1739_c0_g1_i5,blat.proc3825148.chain_3053	2	STRG.3218.1,blat.proc3825148.chain_3056	2
scaffold_2	ends_in_intron	5187997	5187997	-	asmbl_23136	none	Trinity_GG_1094_c0_g1_i3,blat.proc3825148.chain_1968	2	STRG.1929.1,blat.proc3825148.chain_1965,blat.proc3825148.chain_1967,blat.proc3825148.chain_1970	4
scaffold_19	spliced_intron	7364545	7364696	+	asmbl_21451	none	STRG.22214.1,blat.proc3825174.chain_3211	2	Trinity_GG_29580_c0_g1_i1,blat.proc3825174.chain_3210	2
scaffold_13	alt_donor	7109446	7109447	+	asmbl_11013	none	STRG.16010.2	1	STRG.16010.3,Trinity_GG_26113_c0_g1_i10,blat.proc3825172.chain_781	3
scaffold_17	retained_exon	9971884	9973666	+	asmbl_19142,asmbl_19145	none	STRG.20615.2,blat.proc3825174.chain_1489	2	blat.proc3825174.chain_1488	1
scaffold_12	ends_in_intron	11691790	11691790	-	asmbl_8826	none	blat.proc3825154.chain_3612	1	STRG.15092.1,blat.proc3825154.chain_3613	2
scaffold_8	alt_acceptor	9126055	9126056	-	asmbl_52007,asmbl_52008,asmbl_52009,asmbl_52012	none	STRG.10172.1,STRG.10172.2,STRG.10172.3,blat.proc3825152.chain_2389	4	STRG.10172.4,blat.proc3825152.chain_2387	2
scaffold_16	alt_donor	7587406	7587407	-	asmbl_17183	none	STRG.19414.1,Trinity_GG_10891_c0_g1_i2,blat.proc3825158.chain_541	3	STRG.19414.2,Trinity_GG_10891_c0_g1_i1,blat.proc3825158.chain_542	3
scaffold_9	ends_in_intron	2797004	2797004	+	asmbl_53862	none	blat.proc3825168.chain_3432	1	STRG.10918.1,STRG.10918.4,Trinity_GG_23372_c0_g1_i8,blat.proc3825168.chain_3433	4
scaffold_18	retained_intron	12400332	12400435	-	asmbl_20144,asmbl_20145	none	STRG.21709.1,STRG.21709.4	2	STRG.21709.2,STRG.21709.3	2
scaffold_10	ends_in_intron	342051	342051	-	asmbl_3941	none	Trinity_GG_6630_c0_g1_i4,blat.proc3825154.chain_453	2	STRG.11919.1,blat.proc3825154.chain_451,blat.proc3825154.chain_452	3
scaffold_28	retained_exon	5391043	5391381	+	asmbl_37583,asmbl_37588	none	STRG.29687.1,STRG.29687.2,Trinity_GG_33768_c0_g1_i2,blat.proc3825178.chain_2869	4	STRG.29687.3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866	3
scaffold_13	alt_donor	6950694	6950695	-	asmbl_9820,asmbl_9821,asmbl_9822	none	STRG.15984.2,STRG.15984.4,STRG.15984.5	3	STRG.15984.3	1
scaffold_24	alt_acceptor	8126949	8126950	+	asmbl_32416	none	blat.proc3825178.chain_55	1	blat.proc3825178.chain_54	1
scaffold_17	alternate_exon	9596128	9596163	-	asmbl_18182	none	STRG.20580.3	1	STRG.20580.2,blat.proc3825158.chain_1602	2
scaffold_20	retained_intron	7268277	7268638	+	asmbl_26718,asmbl_26719	none	STRG.23297.1,STRG.23297.3,blat.proc3825176.chain_475	3	STRG.23297.2,blat.proc3825176.chain_477	2
scaffold_2	alt_donor	14228601	14228602	-	asmbl_23586	none	blat.proc3825148.chain_2409	1	STRG.2420.1	1
scaffold_17	alternate_exon	9974395	9974587	+	asmbl_19142,asmbl_19143	none	STRG.20615.2,STRG.20615.3	2	blat.proc3825174.chain_1488,blat.proc3825174.chain_1489	2
scaffold_10	alternate_exon	17195147	17195224	+	asmbl_3749	none	Trinity_GG_24554_c0_g1_i2,blat.proc3825170.chain_1732	2	STRG.13168.1,STRG.13168.2	2
scaffold_300	alt_acceptor	2136	2137	+	asmbl_40905	none	blat.proc3825178.chain_3364	1	STRG.30272.1,STRG.30272.2,STRG.30272.3,blat.proc3825178.chain_3363,blat.proc3825178.chain_3365	5
scaffold_9	spliced_intron	17743121	17743198	+	asmbl_54639,asmbl_54640,asmbl_54641	none	STRG.11863.1,blat.proc3825170.chain_563,blat.proc3825170.chain_565,blat.proc3825170.chain_567	4	blat.proc3825170.chain_566	1
scaffold_14	retained_intron	12753400	12753507	-	asmbl_13598	none	blat.proc3825156.chain_2475	1	STRG.17591.1,STRG.17591.2,STRG.17591.3,blat.proc3825156.chain_2474,blat.proc3825156.chain_2476	5
scaffold_8	alt_acceptor	4799709	4799710	-	asmbl_51799	none	STRG.9941.1,Trinity_GG_5553_c0_g1_i2,blat.proc3825152.chain_2217	3	STRG.9941.2	1
scaffold_10	alternate_exon	3929710	3931532	-	asmbl_4239,asmbl_4244	none	STRG.12235.1,blat.proc3825154.chain_797,blat.proc3825154.chain_801	3	STRG.12235.2,STRG.12235.4,STRG.12235.5,blat.proc3825154.chain_798,blat.proc3825154.chain_800	5
scaffold_5	retained_intron	10534403	10534511	-	asmbl_44361	none	blat.proc3825150.chain_2540	1	STRG.6342.3	1
scaffold_21	starts_in_intron	10330712	10330712	-	asmbl_28036	none	STRG.24501.2	1	STRG.24501.3	1
scaffold_21	spliced_intron	10120864	10120890	+	asmbl_28864	none	STRG.24478.1	1	Trinity_GG_30844_c0_g1_i1,Trinity_GG_30844_c0_g1_i2,blat.proc3825176.chain_1623	3
scaffold_20	alt_donor	9677137	9677138	+	asmbl_26883	none	STRG.23508.2	1	STRG.23508.1,blat.proc3825176.chain_677	2
scaffold_17	starts_in_intron	14081907	14081907	+	asmbl_19387	none	blat.proc3825174.chain_1793	1	STRG.20887.1,blat.proc3825174.chain_1791	2
scaffold_5	retained_exon	4683950	4683961	-	asmbl_43989,asmbl_43992,asmbl_43993	none	blat.proc3825150.chain_2075,blat.proc3825150.chain_2078,blat.proc3825150.chain_2081	3	STRG.5929.1,blat.proc3825150.chain_2083,blat.proc3825150.chain_2085	3
scaffold_8	alternate_exon	16507020	16517926	-	asmbl_52420	none	STRG.10629.5	1	blat.proc3825152.chain_2934	1
scaffold_26	alt_donor	5862610	5862611	+	asmbl_35050	none	blat.proc3825178.chain_1391	1	STRG.28294.1,blat.proc3825178.chain_1390	2
scaffold_14	alternate_exon	15946239	15946417	+	asmbl_12654	none	STRG.17840.3,blat.proc3825172.chain_2566	2	STRG.17840.1,STRG.17840.2	2
scaffold_18	alternate_exon	12403764	12403796	-	asmbl_20149	none	blat.proc3825158.chain_2573	1	STRG.21708.2,blat.proc3825158.chain_2574	2
scaffold_23	retained_exon	7512954	7513088	-	asmbl_31035	none	STRG.26071.1	1	STRG.26071.3,blat.proc3825160.chain_3240	2
scaffold_8	retained_intron	13133136	13133848	-	asmbl_52266,asmbl_52268	none	STRG.10488.2,blat.proc3825152.chain_2750,blat.proc3825152.chain_2751	3	blat.proc3825152.chain_2749	1
scaffold_12	starts_in_intron	12348880	12348880	+	asmbl_7994	none	blat.proc3825170.chain_3645	1	STRG.15140.1,Trinity_GG_25652_c0_g1_i2,Trinity_GG_25652_c0_g1_i3,blat.proc3825170.chain_3644,blat.proc3825170.chain_3646	5
scaffold_10	alt_donor	4128321	4128322	-	asmbl_4262	none	STRG.12250.1,blat.proc3825154.chain_830	2	STRG.12250.2,STRG.12250.3,blat.proc3825154.chain_829	3
scaffold_3	spliced_intron	5529821	5529991	-	asmbl_38851	none	STRG.3225.1	1	blat.proc3825148.chain_3081	1
scaffold_13	alternate_exon	11377478	11378589	-	asmbl_10081	none	STRG.16301.7,Trinity_GG_9138_c0_g2_i1,blat.proc3825156.chain_1175	3	STRG.16301.4,blat.proc3825156.chain_1170	2
scaffold_22	alt_acceptor	4325484	4325485	-	asmbl_29248	none	STRG.24853.2,blat.proc3825160.chain_2052	2	STRG.24853.1,blat.proc3825160.chain_2053	2
scaffold_2	starts_in_intron	14179395	14179395	+	asmbl_24889	none	blat.proc3825164.chain_2649	1	STRG.2412.1	1
scaffold_7	starts_in_intron	15320340	15320340	-	asmbl_51371	none	blat.proc3825152.chain_1831	1	STRG.9547.1,blat.proc3825152.chain_1830	2
scaffold_12	alternate_exon	10611281	10611363	+	asmbl_7952	none	STRG.15044.1,blat.proc3825170.chain_3550	2	STRG.15044.2,STRG.15044.3,Trinity_GG_25597_c0_g1_i2,blat.proc3825170.chain_3549	4
scaffold_15	retained_intron	12435740	12435952	+	asmbl_15571	none	blat.proc3825172.chain_3335	1	blat.proc3825172.chain_3337,blat.proc3825172.chain_3339,blat.proc3825172.chain_3341	3
scaffold_15	alt_acceptor	3687382	3687383	-	asmbl_14112	none	blat.proc3825156.chain_2988	1	STRG.18149.2,STRG.18149.3	2
scaffold_22	alt_donor	6123502	6123503	+	asmbl_30097,asmbl_30108	none	STRG.24968.1,STRG.24968.2,Trinity_GG_31147_c1_g1_i3,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2128	5	STRG.24968.3,blat.proc3825176.chain_2132	2
scaffold_23	alt_donor	5305335	5305336	+	asmbl_31561,asmbl_31563	none	STRG.25910.2,blat.proc3825176.chain_2856	2	STRG.25910.1,blat.proc3825176.chain_2854,blat.proc3825176.chain_2857	3
scaffold_20	starts_in_intron	10133833	10133833	+	asmbl_26939	none	Trinity_GG_30342_c0_g1_i3,blat.proc3825176.chain_736	2	STRG.23558.1,Trinity_GG_30342_c0_g1_i1,blat.proc3825176.chain_735	3
scaffold_6	alternate_exon	2929007	2929199	-	asmbl_48198	none	blat.proc3825150.chain_3330	1	STRG.7297.1,STRG.7297.4,blat.proc3825150.chain_3331	3
scaffold_18	starts_in_intron	5975832	5975832	+	asmbl_20634	none	Trinity_GG_29050_c0_g1_i1,blat.proc3825174.chain_2265	2	STRG.21351.1	1
scaffold_1	alt_acceptor	12449056	12449057	+	asmbl_2218,asmbl_2219	none	STRG.859.1,STRG.859.3,Trinity_GG_17840_c0_g1_i1,Trinity_GG_17840_c0_g1_i6,blat.proc3825164.chain_1027,blat.proc3825164.chain_1028,blat.proc3825164.chain_1029	7	STRG.859.2,Trinity_GG_17840_c0_g1_i2,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1030,blat.proc3825164.chain_1031	5
scaffold_11	alt_donor	11627317	11627318	+	asmbl_5978	none	STRG.14087.2	1	STRG.14087.1,Trinity_GG_25077_c0_g1_i1,blat.proc3825170.chain_2628	3
scaffold_13	retained_exon	15672387	15672426	+	asmbl_11529	none	STRG.16612.4	1	STRG.16612.6	1
scaffold_5	alternate_exon	18704152	18704718	-	asmbl_44862	none	STRG.6996.2	1	STRG.6996.1,blat.proc3825150.chain_3114	2
scaffold_26	spliced_intron	9772322	9772792	+	asmbl_35259,asmbl_35263,asmbl_35266	none	STRG.28516.1,STRG.28516.7,blat.proc3825178.chain_1636,blat.proc3825178.chain_1641	4	STRG.28516.3,STRG.28516.4,STRG.28516.5,Trinity_GG_33086_c0_g1_i6,blat.proc3825178.chain_1637,blat.proc3825178.chain_1639	6
scaffold_1	skipped_exon	12448352	12450376	+	asmbl_2221	none	Trinity_GG_17840_c0_g1_i2,blat.proc3825164.chain_1031	2	STRG.859.1,STRG.859.2,Trinity_GG_17840_c0_g1_i1,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1028,blat.proc3825164.chain_1030	6
scaffold_13	spliced_intron	360693	360785	-	asmbl_9305,asmbl_9306,asmbl_9307,asmbl_9314,asmbl_9316,asmbl_9317,asmbl_9318	none	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,STRG.15442.5,Trinity_GG_8663_c0_g1_i10,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i22,Trinity_GG_8663_c0_g1_i6,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_294,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_297,blat.proc3825156.chain_300	15	Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g2_i1,blat.proc3825156.chain_298,blat.proc3825156.chain_301	4
scaffold_22	retained_intron	4408885	4409056	-	asmbl_29258	none	Trinity_GG_13906_c0_g1_i2,blat.proc3825160.chain_2062	2	STRG.24858.1,blat.proc3825160.chain_2061	2
scaffold_27	starts_in_intron	4706092	4706092	-	asmbl_36962	none	blat.proc3825162.chain_2130	1	STRG.28909.1,blat.proc3825162.chain_2131	2
scaffold_10	retained_intron	13767257	13767588	+	asmbl_3616	none	Trinity_GG_24455_c0_g1_i1	1	STRG.12970.1	1
scaffold_22	spliced_intron	210328	210515	+	asmbl_29823	none	STRG.24676.2,blat.proc3825176.chain_1810	2	STRG.24676.1,STRG.24676.3,STRG.24676.5,Trinity_GG_30960_c1_g1_i1,blat.proc3825176.chain_1809	5
scaffold_22	spliced_intron	4240365	4240805	-	asmbl_29212,asmbl_29219	none	STRG.24845.1,blat.proc3825160.chain_2067,blat.proc3825160.chain_2068	3	blat.proc3825160.chain_2066	1
scaffold_15	spliced_intron	9289598	9289814	+	asmbl_15382,asmbl_15384,asmbl_15385	none	STRG.18460.1,STRG.18460.2,blat.proc3825172.chain_3076	3	blat.proc3825172.chain_3077	1
scaffold_14	alternate_exon	7584872	7587401	-	asmbl_13228	none	STRG.17210.2,blat.proc3825156.chain_2023	2	STRG.17210.1	1
scaffold_9	alt_acceptor	5567337	5567338	-	asmbl_55018	none	STRG.11128.1	1	STRG.11128.2	1
scaffold_14	alternate_exon	2888063	2888239	-	asmbl_12983	none	STRG.16887.4	1	STRG.16887.1,STRG.16887.3,blat.proc3825156.chain_1636,blat.proc3825156.chain_1637	4
scaffold_6	spliced_intron	7185667	7185920	-	asmbl_48480,asmbl_48481	none	STRG.7624.1,STRG.7624.2,blat.proc3825150.chain_3701	3	blat.proc3825150.chain_3700	1
scaffold_28	skipped_exon	1008096	1008835	-	asmbl_37958,asmbl_37959	none	STRG.29311.1,blat.proc3825162.chain_2391	2	STRG.29311.2,blat.proc3825162.chain_2392	2
scaffold_8	alt_donor	10058929	10058930	-	asmbl_52096	none	STRG.10265.2,blat.proc3825152.chain_2448	2	STRG.10265.1,blat.proc3825152.chain_2447	2
scaffold_22	alternate_exon	5937043	5938083	+	asmbl_30073	none	STRG.24944.2,Trinity_GG_31104_c3_g1_i1,blat.proc3825176.chain_2050	3	STRG.24944.1,Trinity_GG_31104_c2_g1_i1,blat.proc3825176.chain_2049	3
scaffold_10	alternate_exon	2786188	2786562	-	asmbl_4132	none	STRG.12105.2,Trinity_GG_6692_c0_g1_i2,blat.proc3825154.chain_584	3	STRG.12105.1,Trinity_GG_6692_c0_g1_i1,Trinity_GG_6692_c0_g1_i3,Trinity_GG_6692_c0_g1_i6,blat.proc3825154.chain_580,blat.proc3825154.chain_581,blat.proc3825154.chain_582,blat.proc3825154.chain_583,blat.proc3825154.chain_585,blat.proc3825154.chain_586	10
scaffold_27	alt_donor	9329778	9329779	-	asmbl_37131,asmbl_37133	none	STRG.29184.2,blat.proc3825162.chain_2363	2	STRG.29184.1,blat.proc3825162.chain_2361,blat.proc3825162.chain_2362	3
scaffold_2	alt_donor	1318002	1318003	+	asmbl_24181	none	STRG.1595.2	1	STRG.1595.1,blat.proc3825164.chain_1794,blat.proc3825164.chain_1795	3
scaffold_8	alternate_exon	8187435	8187670	-	asmbl_51947	none	blat.proc3825152.chain_2379	1	blat.proc3825152.chain_2378	1
scaffold_9	retained_intron	6904964	6905139	-	asmbl_55096	none	Trinity_GG_6207_c0_g1_i4,blat.proc3825152.chain_3444	2	Trinity_GG_6207_c0_g1_i5,blat.proc3825152.chain_3441	2
scaffold_6	spliced_intron	9585760	9586086	+	asmbl_47231	none	STRG.7810.1,blat.proc3825168.chain_286	2	Trinity_GG_21611_c0_g1_i1,blat.proc3825168.chain_285	2
scaffold_3	spliced_intron	10756336	10756429	+	asmbl_40295	none	STRG.3509.1,blat.proc3825166.chain_30	2	STRG.3509.2,blat.proc3825166.chain_29	2
scaffold_19	alt_acceptor	11399608	11399609	+	asmbl_21692	none	STRG.22469.1,Trinity_GG_29734_c0_g1_i2,blat.proc3825174.chain_3465	3	STRG.22469.2	1
scaffold_23	spliced_intron	4899316	4899400	+	asmbl_31534,asmbl_31538	none	STRG.25884.2,Trinity_GG_31591_c0_g1_i2,blat.proc3825176.chain_2819	3	STRG.25884.3	1
scaffold_26	retained_intron	6351209	6351295	-	asmbl_35681,asmbl_35684	none	STRG.28335.4,STRG.28335.6	2	STRG.28335.1,STRG.28335.2,STRG.28335.3,blat.proc3825162.chain_1570	4
scaffold_4	retained_intron	19591656	19591710	-	asmbl_43461	none	STRG.5548.1	1	blat.proc3825150.chain_1746	1
scaffold_9	retained_intron	16656777	16657454	-	asmbl_55604,asmbl_55605	none	blat.proc3825154.chain_280,blat.proc3825154.chain_281	2	STRG.11813.1,blat.proc3825154.chain_279	2
scaffold_1	retained_intron	14354771	14354860	-	asmbl_898,asmbl_899,asmbl_900,asmbl_901	none	Trinity_GG_547_c0_g1_i3,blat.proc3825148.chain_1036,blat.proc3825148.chain_1037,blat.proc3825148.chain_1038,blat.proc3825148.chain_1039	5	blat.proc3825148.chain_1040	1
scaffold_12	spliced_intron	15048311	15048677	+	asmbl_8106	none	STRG.15308.1,Trinity_GG_25685_c0_g1_i1,blat.proc3825170.chain_3701	3	blat.proc3825170.chain_3702	1
scaffold_2	alternate_exon	19088884	19089346	+	asmbl_25260	none	STRG.2776.1	1	STRG.2776.2,Trinity_GG_18865_c0_g1_i1,blat.proc3825164.chain_3013	3
scaffold_21	alt_donor	7729050	7729051	+	asmbl_28765	none	STRG.24316.1	1	STRG.24316.3,STRG.24316.4,blat.proc3825176.chain_1476,blat.proc3825176.chain_1477	4
scaffold_3	retained_intron	10607348	10607574	-	asmbl_39098,asmbl_39102	none	STRG.3501.1,STRG.3501.3,blat.proc3825148.chain_3329	3	STRG.3501.2,blat.proc3825148.chain_3328,blat.proc3825148.chain_3330	3
scaffold_24	alt_donor	1517753	1517754	+	asmbl_32081	none	STRG.26402.2	1	STRG.26402.1,blat.proc3825160.chain_3507	2
scaffold_22	retained_intron	224379	224758	-	asmbl_29074,asmbl_29080	none	STRG.24683.2,blat.proc3825160.chain_1904,blat.proc3825160.chain_1907	3	STRG.24683.5	1
scaffold_4	skipped_exon	5034616	5035716	-	asmbl_42552	none	STRG.4399.3	1	STRG.4399.1,STRG.4399.2	2
scaffold_2	starts_in_intron	14267292	14267292	-	asmbl_23591	none	blat.proc3825148.chain_2424	1	STRG.2422.1,blat.proc3825148.chain_2425	2
scaffold_10	spliced_intron	7684958	7685179	+	asmbl_3299	none	blat.proc3825170.chain_1171	1	STRG.12557.4,blat.proc3825170.chain_1164,blat.proc3825170.chain_1168	3
scaffold_5	ends_in_intron	15553604	15553604	-	asmbl_44702	none	Trinity_GG_3758_c0_g1_i1,blat.proc3825150.chain_2887	2	STRG.6746.1,blat.proc3825150.chain_2886	2
scaffold_12	alt_donor	9972920	9972921	-	asmbl_8704	none	STRG.14969.3	1	STRG.14969.1,STRG.14969.2,blat.proc3825154.chain_3477,blat.proc3825154.chain_3478	4
scaffold_7	starts_in_intron	32728	32728	+	asmbl_49534	none	STRG.8587.3,blat.proc3825168.chain_1096	2	STRG.8587.1,STRG.8587.2,blat.proc3825168.chain_1094	3
scaffold_7	starts_in_intron	13139165	13139165	-	asmbl_51290	none	Trinity_GG_5290_c0_g1_i2,blat.proc3825152.chain_1763	2	STRG.9425.1,Trinity_GG_5290_c0_g1_i3,blat.proc3825152.chain_1762	3
scaffold_21	spliced_intron	2470395	2470715	-	asmbl_27457,asmbl_27460	none	STRG.23874.1,blat.proc3825160.chain_1043,blat.proc3825160.chain_1044	3	STRG.23874.2,blat.proc3825160.chain_1045,blat.proc3825160.chain_1048	3
scaffold_6	retained_intron	19076979	19077208	+	asmbl_47870	none	STRG.8575.3,Trinity_GG_21983_c2_g1_i1,blat.proc3825168.chain_954	3	STRG.8575.2,Trinity_GG_21983_c0_g1_i4,Trinity_GG_21983_c0_g1_i5,blat.proc3825168.chain_949,blat.proc3825168.chain_950	5
scaffold_4	alt_acceptor	4453327	4453328	+	asmbl_41276	none	STRG.4355.2	1	STRG.4355.1,blat.proc3825166.chain_830	2
scaffold_4	spliced_intron	4498633	4498751	-	asmbl_42519,asmbl_42521	none	STRG.4352.1,STRG.4352.2,Trinity_GG_2437_c0_g1_i2,blat.proc3825150.chain_588	4	Trinity_GG_2437_c0_g1_i3,blat.proc3825150.chain_589	2
scaffold_8	spliced_intron	1207989	1208036	-	asmbl_51699	none	STRG.9750.1	1	STRG.9750.2	1
scaffold_17	starts_in_intron	6786016	6786016	-	asmbl_17984	none	blat.proc3825158.chain_1359	1	STRG.20328.1,blat.proc3825158.chain_1358	2
scaffold_21	alt_donor	7287140	7287141	-	asmbl_27789,asmbl_27791	none	STRG.24249.1,STRG.24249.2,Trinity_GG_13530_c0_g1_i1,blat.proc3825160.chain_1388	4	STRG.24249.3,Trinity_GG_13530_c0_g1_i2,blat.proc3825160.chain_1389	3
scaffold_4	alt_donor	17503558	17503559	-	asmbl_43278	none	STRG.5337.1,blat.proc3825150.chain_1492	2	STRG.5337.2,blat.proc3825150.chain_1494	2
scaffold_1	spliced_intron	10460558	10460718	-	asmbl_590	none	STRG.684.1,blat.proc3825148.chain_712	2	Trinity_GG_382_c0_g1_i1,blat.proc3825148.chain_711	2
scaffold_8	skipped_exon	3603543	3604638	+	asmbl_52781	none	STRG.9857.1,blat.proc3825168.chain_2404	2	STRG.9857.2,blat.proc3825168.chain_2403	2
scaffold_21	spliced_intron	6818231	6818419	+	asmbl_28702,asmbl_28703,asmbl_28704,asmbl_28705	none	STRG.24217.2,blat.proc3825176.chain_1368,blat.proc3825176.chain_1369,blat.proc3825176.chain_1370,blat.proc3825176.chain_1371	5	STRG.24217.1,Trinity_GG_30700_c0_g1_i3,blat.proc3825176.chain_1372	3
scaffold_13	alt_donor	10433299	10433300	+	asmbl_11238,asmbl_11239,asmbl_11240	none	STRG.16250.1,STRG.16250.2,STRG.16250.4,blat.proc3825172.chain_976,blat.proc3825172.chain_977	5	STRG.16250.3,blat.proc3825172.chain_975	2
scaffold_17	spliced_intron	1360485	1360559	-	asmbl_17704,asmbl_17705	none	STRG.19976.1,blat.proc3825158.chain_1024	2	blat.proc3825158.chain_1023	1
scaffold_1	spliced_intron	11626963	11627419	-	asmbl_647,asmbl_650	none	STRG.769.1,Trinity_GG_386_c0_g1_i1,blat.proc3825148.chain_721	3	Trinity_GG_386_c0_g1_i7,blat.proc3825148.chain_719,blat.proc3825148.chain_722,blat.proc3825148.chain_723	4
scaffold_24	alt_acceptor	9956852	9956853	-	asmbl_33154,asmbl_33155,asmbl_33156,asmbl_33157,asmbl_33160,asmbl_33162,asmbl_33163	none	STRG.26968.1,STRG.26968.2,STRG.26968.6,blat.proc3825162.chain_269,blat.proc3825162.chain_271,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	8	STRG.26968.8	1
scaffold_24	retained_exon	4319490	4319531	+	asmbl_32188	none	STRG.26600.3	1	STRG.26600.2	1
scaffold_21	starts_in_intron	2625384	2625384	+	asmbl_28415	none	Trinity_GG_30554_c0_g1_i1,blat.proc3825176.chain_1110	2	STRG.23897.1,STRG.23897.2,blat.proc3825176.chain_1111,blat.proc3825176.chain_1112	4
scaffold_26	alt_acceptor	9843313	9843314	+	asmbl_35278,asmbl_35283,asmbl_35284,asmbl_35285,asmbl_35288,asmbl_35290	none	STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1575,blat.proc3825178.chain_1576,blat.proc3825178.chain_1578,blat.proc3825178.chain_1581	7	STRG.28546.2,STRG.28546.3,blat.proc3825178.chain_1580	3
scaffold_1	alternate_exon	17524829	17524924	-	asmbl_1035	none	STRG.1211.2	1	STRG.1212.1,Trinity_GG_632_c0_g1_i1,blat.proc3825148.chain_1200	3
scaffold_18	alt_acceptor	7035736	7035737	-	asmbl_19920	none	STRG.21414.1,blat.proc3825158.chain_2337	2	STRG.21414.2	1
scaffold_13	alt_donor	8268604	8268605	+	asmbl_11111	none	STRG.16117.1,blat.proc3825172.chain_890	2	STRG.16117.2	1
scaffold_2	retained_intron	18771893	18771973	+	asmbl_25248	none	STRG.2756.1	1	STRG.2756.2	1
scaffold_10	spliced_intron	6065331	6066224	+	asmbl_3221,asmbl_3228	none	STRG.12435.3,blat.proc3825170.chain_1067,blat.proc3825170.chain_1068	3	STRG.12435.1,STRG.12435.2,STRG.12435.4,STRG.12435.5,blat.proc3825170.chain_1069,blat.proc3825170.chain_1070,blat.proc3825170.chain_1071	7
scaffold_1	retained_exon	18485977	18486046	-	asmbl_1112	none	blat.proc3825148.chain_1321	1	STRG.1298.2,STRG.1298.4,blat.proc3825148.chain_1322	3
scaffold_4	spliced_intron	16480998	16481101	-	asmbl_43180	none	blat.proc3825150.chain_1405	1	STRG.5225.2,blat.proc3825150.chain_1406	2
scaffold_14	retained_intron	13897375	13897695	+	asmbl_12515,asmbl_12516	none	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2	STRG.17673.2,STRG.17673.3,blat.proc3825172.chain_2390	3
scaffold_11	skipped_exon	11937192	11937829	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.2,STRG.14177.3	2
scaffold_27	alternate_exon	1402338	1402442	+	asmbl_36000	none	STRG.28621.2	1	STRG.28621.1	1
scaffold_5	skipped_exon	15681367	15683372	+	asmbl_46006	none	blat.proc3825166.chain_2861	1	STRG.6761.1,blat.proc3825166.chain_2859,blat.proc3825166.chain_2862	3
scaffold_8	spliced_intron	18248240	18248548	-	asmbl_52531	none	STRG.10728.1	1	STRG.10728.4,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3015,blat.proc3825152.chain_3017	5
scaffold_12	retained_intron	6542586	6543063	+	asmbl_7700	none	Trinity_GG_25435_c0_g1_i2,blat.proc3825170.chain_3248	2	STRG.14758.1,STRG.14758.3,Trinity_GG_25435_c0_g1_i1,blat.proc3825170.chain_3247	4
scaffold_10	alternate_exon	8316060	8316326	-	asmbl_4573	none	STRG.12589.1	1	STRG.12589.2	1
scaffold_5	spliced_intron	420596	420639	-	asmbl_43776	none	blat.proc3825150.chain_1845	1	STRG.5612.1	1
scaffold_28	alt_acceptor	7276532	7276533	-	asmbl_38388	none	blat.proc3825162.chain_3016	1	STRG.29796.3	1
scaffold_19	retained_intron	7364545	7364696	+	asmbl_21450	none	Trinity_GG_29580_c0_g1_i1,blat.proc3825174.chain_3210	2	STRG.22214.1,blat.proc3825174.chain_3211	2
scaffold_4	skipped_exon	19524530	19526703	-	asmbl_43446,asmbl_43447	none	blat.proc3825150.chain_1643,blat.proc3825150.chain_1644	2	STRG.5538.1,blat.proc3825150.chain_1642	2
scaffold_13	alt_donor	911723	911724	-	asmbl_9380,asmbl_9381,asmbl_9385	none	STRG.15470.1,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_266,blat.proc3825156.chain_272	5	STRG.15470.3,STRG.15470.4,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271	5
scaffold_12	spliced_intron	12288119	12288532	-	asmbl_8854,asmbl_8858,asmbl_8859	none	STRG.15130.1,STRG.15130.2,STRG.15130.5	3	STRG.15130.3,STRG.15130.4,Trinity_GG_8430_c0_g1_i1,blat.proc3825154.chain_3606	4
scaffold_14	starts_in_intron	14080915	14080915	-	asmbl_13676	none	STRG.17679.1	1	STRG.17679.2,blat.proc3825156.chain_2522	2
scaffold_8	spliced_intron	4233387	4233662	+	asmbl_52824,asmbl_52825	none	STRG.9905.1,blat.proc3825168.chain_2493,blat.proc3825168.chain_2494	3	blat.proc3825168.chain_2491	1
scaffold_24	retained_exon	2430533	2430685	+	asmbl_32096	none	STRG.26465.1,blat.proc3825176.chain_3403	2	STRG.26465.2,blat.proc3825176.chain_3402	2
scaffold_1	alternate_exon	12108822	12109217	+	asmbl_2175	none	Trinity_GG_17804_c0_g1_i1,blat.proc3825164.chain_951,blat.proc3825164.chain_953	3	STRG.826.1,blat.proc3825164.chain_952	2
scaffold_7	spliced_intron	12410566	12410770	+	asmbl_50256	none	STRG.9344.1,blat.proc3825168.chain_1859	2	blat.proc3825168.chain_1860	1
scaffold_16	starts_in_intron	1805175	1805175	+	asmbl_16099	none	STRG.19107.2,blat.proc3825174.chain_13	2	STRG.19107.1,blat.proc3825174.chain_15	2
scaffold_16	alt_acceptor	6144208	6144209	+	asmbl_16282	none	STRG.19354.4	1	STRG.19354.1,STRG.19354.3	2
scaffold_1	alternate_exon	9176498	9176582	-	asmbl_523	none	STRG.608.2	1	STRG.608.1,blat.proc3825148.chain_610	2
scaffold_18	alt_donor	5905783	5905784	-	asmbl_19876,asmbl_19877,asmbl_19879	none	STRG.21337.2,STRG.21337.3,STRG.21337.4	3	STRG.21337.1	1
scaffold_19	spliced_intron	12822372	12822631	-	asmbl_22547	none	blat.proc3825158.chain_3413	1	blat.proc3825158.chain_3409	1
scaffold_300	alt_acceptor	2163	2164	+	asmbl_40902,asmbl_40903,asmbl_40904	none	STRG.30272.1,STRG.30272.2,STRG.30272.3,blat.proc3825178.chain_3363,blat.proc3825178.chain_3365	5	blat.proc3825178.chain_3364	1
scaffold_4	alt_acceptor	14590821	14590822	-	asmbl_43051	none	STRG.5077.1,blat.proc3825150.chain_1241	2	STRG.5077.2,STRG.5077.3	2
scaffold_4	ends_in_intron	15164604	15164604	+	asmbl_41932	none	blat.proc3825166.chain_1549	1	STRG.5117.1,STRG.5117.2,blat.proc3825166.chain_1548,blat.proc3825166.chain_1550	4
scaffold_22	retained_intron	5923485	5923610	+	asmbl_30069	none	Trinity_GG_31103_c0_g1_i2,blat.proc3825176.chain_2046	2	STRG.24938.1,STRG.24938.2,blat.proc3825176.chain_2045	3
scaffold_18	retained_intron	8401454	8401901	+	asmbl_20835,asmbl_20836,asmbl_20838	none	STRG.21513.2,STRG.21513.4,blat.proc3825174.chain_2583	3	STRG.21513.3,STRG.21513.5,blat.proc3825174.chain_2581	3
scaffold_10	starts_in_intron	5500719	5500719	+	asmbl_3178	none	Trinity_GG_24126_c0_g2_i1,blat.proc3825170.chain_987	2	blat.proc3825170.chain_985	1
scaffold_2	retained_exon	15267759	15267792	+	asmbl_25000	none	blat.proc3825164.chain_2604	1	STRG.2485.1,STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2605,blat.proc3825164.chain_2606,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	10
scaffold_7	spliced_intron	3957526	3957766	-	asmbl_50842	none	STRG.8789.2	1	Trinity_GG_5022_c1_g1_i1,blat.proc3825152.chain_1272	2
scaffold_2	starts_in_intron	15508442	15508442	-	asmbl_23639	none	blat.proc3825148.chain_2504	1	STRG.2513.1	1
scaffold_28	starts_in_intron	9578455	9578455	-	asmbl_38524	none	STRG.29983.1,blat.proc3825162.chain_3161	2	STRG.29983.2,blat.proc3825162.chain_3160	2
scaffold_10	alternate_exon	16252344	16257717	+	asmbl_3709	none	STRG.13106.1	1	STRG.13106.4	1
scaffold_17	retained_exon	2354832	2355038	+	asmbl_18641	none	STRG.20030.6	1	STRG.20030.5,STRG.20030.7	2
scaffold_4	alt_donor	3279583	3279584	+	asmbl_41168	none	STRG.4256.1,Trinity_GG_19627_c0_g1_i3,blat.proc3825166.chain_610	3	Trinity_GG_19627_c0_g1_i2,blat.proc3825166.chain_611	2
scaffold_16	spliced_intron	4017628	4017730	-	asmbl_17033	none	STRG.19221.1,blat.proc3825158.chain_342	2	blat.proc3825158.chain_343	1
scaffold_27	starts_in_intron	6741962	6741962	+	asmbl_36413	none	Trinity_GG_33384_c0_g1_i1,blat.proc3825178.chain_2244	2	STRG.29052.1,STRG.29052.2,blat.proc3825178.chain_2245	3
scaffold_28	starts_in_intron	55722	55722	-	asmbl_37882	none	blat.proc3825162.chain_2399	1	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2400,blat.proc3825162.chain_2402	4
scaffold_1	ends_in_intron	15811858	15811858	+	asmbl_2447	none	Trinity_GG_17984_c0_g1_i2,blat.proc3825164.chain_1290	2	STRG.1108.1,Trinity_GG_17984_c0_g1_i1,blat.proc3825164.chain_1291	3
scaffold_17	alt_donor	14037476	14037477	-	asmbl_18401	none	STRG.20881.3	1	STRG.20881.1,STRG.20881.2	2
scaffold_3	skipped_exon	13664353	13664809	-	asmbl_39281	none	STRG.3708.2	1	STRG.3708.1	1
scaffold_23	retained_intron	2326610	2326740	-	asmbl_30733	none	STRG.25702.1,Trinity_GG_14377_c0_g1_i2,blat.proc3825160.chain_2871	3	blat.proc3825160.chain_2870	1
scaffold_11	retained_intron	14587104	14588383	+	asmbl_6098,asmbl_6099	none	STRG.14259.3,blat.proc3825170.chain_2701	2	STRG.14259.1,blat.proc3825170.chain_2703	2
scaffold_17	spliced_intron	9004119	9004561	+	asmbl_19056,asmbl_19058	none	STRG.20525.3,blat.proc3825174.chain_1322	2	blat.proc3825174.chain_1323	1
scaffold_12	starts_in_intron	8891679	8891679	+	asmbl_7836	none	blat.proc3825170.chain_3472	1	STRG.14897.1,STRG.14897.2,STRG.14897.3,Trinity_GG_25554_c0_g1_i2,Trinity_GG_25554_c0_g1_i3,blat.proc3825170.chain_3471,blat.proc3825170.chain_3473	7
scaffold_10	ends_in_intron	8907086	8907086	+	asmbl_3336	none	Trinity_GG_24269_c0_g1_i3	1	STRG.12636.1,STRG.12636.2,blat.proc3825170.chain_1225,blat.proc3825170.chain_1226	4
scaffold_1	retained_intron	9306890	9306967	+	asmbl_1980	none	blat.proc3825164.chain_746	1	STRG.628.1,blat.proc3825164.chain_747,blat.proc3825164.chain_748	3
scaffold_28	alt_acceptor	1649346	1649347	-	asmbl_38001	none	STRG.29355.1	1	STRG.29355.2	1
scaffold_3	alt_acceptor	12703122	12703123	-	asmbl_39230	none	STRG.3665.2	1	STRG.3665.1,blat.proc3825148.chain_3520	2
scaffold_3	starts_in_intron	14258875	14258875	+	asmbl_40506	none	Trinity_GG_19418_c0_g1_i1,blat.proc3825166.chain_253	2	STRG.3766.1,STRG.3766.2,blat.proc3825166.chain_252,blat.proc3825166.chain_254	4
scaffold_6	starts_in_intron	1466507	1466507	+	asmbl_46700	none	blat.proc3825166.chain_3379	1	STRG.7188.1	1
scaffold_21	starts_in_intron	6620719	6620719	+	asmbl_28677,asmbl_28679	none	STRG.24189.1,Trinity_GG_30735_c0_g1_i1,blat.proc3825176.chain_1432	3	Trinity_GG_30735_c0_g1_i2,blat.proc3825176.chain_1431	2
scaffold_9	skipped_exon	14039157	14041365	+	asmbl_54518,asmbl_54522	none	STRG.11665.1,STRG.11665.2,Trinity_GG_23791_c0_g1_i3,blat.proc3825170.chain_424	4	STRG.11665.3,Trinity_GG_23791_c0_g1_i4,blat.proc3825170.chain_423	3
scaffold_21	spliced_intron	1633782	1633907	+	asmbl_28342	none	STRG.23818.2,blat.proc3825176.chain_1047	2	STRG.23818.1,blat.proc3825176.chain_1045	2
scaffold_6	retained_intron	14639697	14639780	-	asmbl_49021	none	blat.proc3825152.chain_643	1	STRG.8233.1,blat.proc3825152.chain_642	2
scaffold_15	spliced_intron	13327570	13327726	+	asmbl_15626,asmbl_15633,asmbl_15634,asmbl_15635,asmbl_15636,asmbl_15637	none	STRG.18771.1,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389	6	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	6
scaffold_9	retained_exon	3374637	3374715	+	asmbl_53893	none	blat.proc3825168.chain_3418	1	STRG.10943.1,blat.proc3825168.chain_3420	2
scaffold_5	alt_acceptor	2536551	2536552	+	asmbl_45171,asmbl_45173	none	STRG.5779.1,STRG.5779.4,blat.proc3825166.chain_2003,blat.proc3825166.chain_2005	4	STRG.5779.3,blat.proc3825166.chain_2002	2
scaffold_21	starts_in_intron	8920639	8920639	+	asmbl_28838	none	Trinity_GG_30826_c0_g1_i1,blat.proc3825176.chain_1592	2	STRG.24410.1,STRG.24410.2,blat.proc3825176.chain_1591	3
scaffold_8	starts_in_intron	8174919	8174919	+	asmbl_53007	none	STRG.10103.4	1	STRG.10103.1,STRG.10103.2,STRG.10103.3	3
scaffold_24	retained_intron	6311156	6311448	+	asmbl_32304	none	blat.proc3825176.chain_3581	1	STRG.26696.1,STRG.26696.2,blat.proc3825176.chain_3579,blat.proc3825176.chain_3580	4
scaffold_19	spliced_intron	12251512	12251604	+	asmbl_21770,asmbl_21772	none	STRG.22554.1,STRG.22554.2,Trinity_GG_29774_c0_g1_i1,blat.proc3825174.chain_3549	4	Trinity_GG_29774_c0_g1_i2,blat.proc3825174.chain_3548	2
scaffold_12	alternate_exon	10533033	10533174	+	asmbl_7926	none	Trinity_GG_25582_c0_g1_i1,blat.proc3825170.chain_3525	2	STRG.15021.1,STRG.15021.2,Trinity_GG_25582_c0_g1_i2,blat.proc3825170.chain_3526	4
scaffold_2	spliced_intron	8874291	8874368	+	asmbl_24657	none	STRG.2139.4	1	STRG.2139.1,blat.proc3825164.chain_2329,blat.proc3825164.chain_2330	3
scaffold_13	starts_in_intron	5545454	5545454	+	asmbl_10866	none	Trinity_GG_26030_c0_g1_i1,blat.proc3825172.chain_597	2	STRG.15858.1,blat.proc3825172.chain_595,blat.proc3825172.chain_596	3
scaffold_2	alt_acceptor	1338713	1338714	-	asmbl_22842	none	blat.proc3825148.chain_1538	1	STRG.1598.1	1
scaffold_13	alt_acceptor	3266822	3266823	-	asmbl_9524	none	STRG.15637.1,blat.proc3825156.chain_512	2	STRG.15637.2	1
scaffold_11	retained_intron	15653766	15653915	-	asmbl_7204,asmbl_7205	none	blat.proc3825154.chain_2860,blat.proc3825154.chain_2865	2	STRG.14308.1,STRG.14308.2,blat.proc3825154.chain_2859,blat.proc3825154.chain_2861,blat.proc3825154.chain_2863,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867,blat.proc3825154.chain_2868	8
scaffold_2	spliced_intron	13064806	13065021	+	asmbl_24813,asmbl_24814	none	STRG.2332.2,blat.proc3825164.chain_2494,blat.proc3825164.chain_2497	3	STRG.2332.1,blat.proc3825164.chain_2495,blat.proc3825164.chain_2496,blat.proc3825164.chain_2498,blat.proc3825164.chain_2500	5
scaffold_7	alt_acceptor	10409914	10409915	+	asmbl_50118,asmbl_50122	none	STRG.9223.2,STRG.9223.3,blat.proc3825168.chain_1675	3	STRG.9223.4	1
scaffold_23	starts_in_intron	10204330	10204330	-	asmbl_31132,asmbl_31135,asmbl_31136,asmbl_31138	none	Trinity_GG_14642_c0_g1_i7,blat.proc3825160.chain_3334,blat.proc3825160.chain_3336,blat.proc3825160.chain_3338,blat.proc3825160.chain_3339	5	STRG.26231.2	1
scaffold_12	retained_exon	1056994	1057091	+	asmbl_7456	none	STRG.14447.3	1	STRG.14447.2	1
scaffold_1	alt_acceptor	15988379	15988380	+	asmbl_2458	none	STRG.1120.1,blat.proc3825164.chain_1256	2	STRG.1120.2	1
scaffold_6	retained_intron	3799951	3800050	+	asmbl_46860	none	blat.proc3825166.chain_3634	1	STRG.7378.1,STRG.7378.2,blat.proc3825166.chain_3632,blat.proc3825166.chain_3633	4
scaffold_9	alternate_exon	6905104	6905233	-	asmbl_55093	none	STRG.11202.1,Trinity_GG_6207_c0_g1_i1,blat.proc3825152.chain_3443	3	STRG.11202.2,blat.proc3825152.chain_3442	2
scaffold_17	retained_intron	2684608	2684736	+	asmbl_18684	none	blat.proc3825174.chain_852	1	STRG.20069.1,STRG.20069.2,STRG.20069.3,blat.proc3825174.chain_848,blat.proc3825174.chain_849,blat.proc3825174.chain_851	6
scaffold_11	spliced_intron	6252706	6253377	+	asmbl_5620,asmbl_5623,asmbl_5625	none	STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237,blat.proc3825170.chain_2242	4	STRG.13692.3,Trinity_GG_24860_c1_g1_i1	2
scaffold_11	spliced_intron	8072873	8072982	-	asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6828,asmbl_6834	none	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335,blat.proc3825154.chain_2336	4	Trinity_GG_7709_c1_g1_i4,blat.proc3825154.chain_2337	2
scaffold_1	ends_in_intron	11544111	11544111	+	asmbl_2115	none	Trinity_GG_17784_c0_g1_i2	1	STRG.762.1,Trinity_GG_17784_c0_g1_i1,blat.proc3825164.chain_901	3
scaffold_6	starts_in_intron	14176147	14176147	-	asmbl_48992	none	blat.proc3825152.chain_564	1	STRG.8181.1,STRG.8181.2,blat.proc3825152.chain_562,blat.proc3825152.chain_565	4
scaffold_15	starts_in_intron	10663513	10663513	-	asmbl_14447	none	blat.proc3825156.chain_3372	1	STRG.18551.1,blat.proc3825156.chain_3371	2
scaffold_7	alt_donor	5837172	5837173	+	asmbl_49823	none	STRG.8891.1	1	STRG.8891.2	1
scaffold_27	alternate_exon	4380269	4383228	+	asmbl_36279	none	STRG.28897.2,blat.proc3825178.chain_2086,blat.proc3825178.chain_2087	3	STRG.28897.3	1
scaffold_500	alt_acceptor	2744	2745	+	asmbl_46491,asmbl_46492,asmbl_46496	none	STRG.30357.3,STRG.30357.5,blat.proc3825178.chain_3440	3	STRG.30357.6	1
scaffold_7	starts_in_intron	8073558	8073558	+	asmbl_49954	none	Trinity_GG_22321_c0_g1_i2,blat.proc3825168.chain_1543	2	STRG.9047.1,STRG.9047.2,STRG.9047.3,Trinity_GG_22321_c0_g1_i1,blat.proc3825168.chain_1542	5
scaffold_23	retained_exon	2220592	2220673	-	asmbl_30713	none	STRG.25698.5	1	STRG.25698.1,STRG.25698.2,STRG.25698.3	3
scaffold_25	alt_donor	5568212	5568213	-	asmbl_34261	none	STRG.27457.1,Trinity_GG_15395_c0_g1_i2,blat.proc3825162.chain_820	3	STRG.27457.2,Trinity_GG_15395_c0_g1_i1,blat.proc3825162.chain_819	3
scaffold_10	retained_exon	17395184	17395229	+	asmbl_3772,asmbl_3773	none	STRG.13190.1,STRG.13190.2	2	STRG.13190.3	1
scaffold_6	starts_in_intron	9063072	9063072	+	asmbl_47198	none	Trinity_GG_21591_c0_g1_i1,blat.proc3825168.chain_246	2	STRG.7783.1,blat.proc3825168.chain_247	2
scaffold_4	spliced_intron	7090983	7091175	+	asmbl_41458,asmbl_41461	none	STRG.4547.2,STRG.4547.4	2	STRG.4547.1	1
scaffold_1	ends_in_intron	11457148	11457148	-	asmbl_623	none	Trinity_GG_362_c0_g1_i2,blat.proc3825148.chain_671	2	STRG.759.1,STRG.759.2,Trinity_GG_362_c0_g1_i5,blat.proc3825148.chain_670,blat.proc3825148.chain_673,blat.proc3825148.chain_674	6
scaffold_6	starts_in_intron	14644839	14644839	-	asmbl_49023	none	blat.proc3825152.chain_638	1	STRG.8232.1,blat.proc3825152.chain_637	2
scaffold_3	alternate_exon	11326775	11326820	-	asmbl_39149	none	STRG.3562.2,Trinity_GG_1936_c0_g1_i3,blat.proc3825148.chain_3439	3	STRG.3562.1,Trinity_GG_1936_c0_g1_i2,blat.proc3825148.chain_3437	3
scaffold_8	spliced_intron	11849733	11850658	+	asmbl_53278,asmbl_53284,asmbl_53288	none	STRG.10390.3,STRG.10390.5,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022,blat.proc3825168.chain_3025	5	STRG.10390.2,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	3
scaffold_23	skipped_exon	4228322	4229663	-	asmbl_30848,asmbl_30852	none	STRG.25839.3,blat.proc3825160.chain_2986,blat.proc3825160.chain_2988	3	STRG.25839.2	1
scaffold_6	alternate_exon	3321578	3321662	+	asmbl_46829	none	STRG.7339.2,Trinity_GG_21297_c0_g1_i1,blat.proc3825166.chain_3444	3	STRG.7339.1	1
scaffold_22	retained_intron	11543991	11544062	+	asmbl_30406,asmbl_30407	none	STRG.25505.2,blat.proc3825176.chain_2435	2	STRG.25505.3	1
scaffold_26	spliced_intron	5562155	5562324	+	asmbl_35020	none	STRG.28266.4	1	STRG.28266.3	1
scaffold_20	starts_in_intron	10857767	10857767	+	asmbl_27000	none	STRG.23612.2	1	STRG.23612.1,Trinity_GG_30381_c0_g1_i1,Trinity_GG_30381_c0_g1_i3,blat.proc3825176.chain_804,blat.proc3825176.chain_805,blat.proc3825176.chain_806	6
scaffold_1	spliced_intron	6972741	6972914	+	asmbl_1868,asmbl_1869,asmbl_1871	none	STRG.490.1,blat.proc3825164.chain_645,blat.proc3825164.chain_646,blat.proc3825164.chain_648	4	blat.proc3825164.chain_647	1
scaffold_7	alternate_exon	4044720	4045550	-	asmbl_50849	none	blat.proc3825152.chain_1274	1	STRG.8803.3,blat.proc3825152.chain_1276	2
scaffold_3	ends_in_intron	5006757	5006757	+	asmbl_40054	none	blat.proc3825164.chain_3489	1	STRG.3206.1,STRG.3206.2,blat.proc3825164.chain_3488	3
scaffold_19	skipped_exon	13749402	13752259	+	asmbl_21885	none	STRG.22694.1,blat.proc3825174.chain_3684	2	STRG.22694.2,STRG.22694.3	2
scaffold_5	retained_intron	10380174	10380270	-	asmbl_44356	none	blat.proc3825150.chain_2518	1	STRG.6339.1,STRG.6339.2,blat.proc3825150.chain_2516,blat.proc3825150.chain_2517,blat.proc3825150.chain_2519	5
scaffold_22	retained_intron	4226897	4227163	-	asmbl_29218	none	blat.proc3825160.chain_2074	1	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	10
scaffold_25	alt_acceptor	3095837	3095838	-	asmbl_34089	none	blat.proc3825162.chain_553	1	STRG.27251.3	1
scaffold_6	retained_intron	187756	187786	+	asmbl_46638	none	STRG.7087.1	1	STRG.7087.2	1
scaffold_4	alternate_exon	12834165	12834202	+	asmbl_41762	none	STRG.4925.2,Trinity_GG_20061_c0_g1_i1,blat.proc3825166.chain_1355	3	STRG.4925.1,blat.proc3825166.chain_1356	2
scaffold_11	alt_donor	13554283	13554284	-	asmbl_7139	none	blat.proc3825154.chain_2703	1	STRG.14212.1,blat.proc3825154.chain_2702	2
scaffold_12	alt_donor	5463359	5463360	-	asmbl_8498,asmbl_8499	none	STRG.14703.1,STRG.14703.4,blat.proc3825154.chain_3236,blat.proc3825154.chain_3237	4	STRG.14703.2,STRG.14703.3,STRG.14703.5,blat.proc3825154.chain_3235	4
scaffold_4	spliced_intron	4117926	4118044	-	asmbl_42493	none	blat.proc3825150.chain_546	1	Trinity_GG_2411_c0_g1_i2,blat.proc3825150.chain_547	2
scaffold_28	alternate_exon	3220063	3220096	+	asmbl_37458	none	STRG.29537.2	1	STRG.29537.1	1
scaffold_19	ends_in_intron	12328760	12328760	+	asmbl_21783	none	Trinity_GG_29751_c0_g1_i3,blat.proc3825174.chain_3504	2	STRG.22560.1,Trinity_GG_29751_c0_g1_i2,blat.proc3825174.chain_3506	3
scaffold_9	retained_exon	4206166	4206311	+	asmbl_53941	none	STRG.11024.3	1	STRG.11024.2	1
scaffold_28	alt_donor	4203752	4203753	+	asmbl_37526	none	STRG.29616.2	1	STRG.29616.1	1
scaffold_24	alt_donor	1946770	1946771	-	asmbl_32754,asmbl_32755,asmbl_32756	none	STRG.26421.1,STRG.26421.3,STRG.26421.4	3	STRG.26421.2	1
scaffold_15	ends_in_intron	15355389	15355389	+	asmbl_15759	none	blat.proc3825172.chain_3565	1	blat.proc3825172.chain_3563	1
scaffold_14	alternate_exon	8216351	8216381	-	asmbl_13258	none	STRG.17234.5	1	STRG.17234.2,blat.proc3825156.chain_2055,blat.proc3825156.chain_2060	3
scaffold_15	retained_exon	4231073	4231184	+	asmbl_15129,asmbl_15132	none	STRG.18172.2,blat.proc3825172.chain_2838,blat.proc3825172.chain_2843	3	STRG.18172.1,blat.proc3825172.chain_2837,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842	5
scaffold_21	spliced_intron	11303261	11303360	+	asmbl_28920	none	STRG.24604.1	1	blat.proc3825176.chain_1704	1
scaffold_17	starts_in_intron	6800931	6800931	+	asmbl_18875	none	STRG.20333.4	1	STRG.20333.1,STRG.20333.2,STRG.20333.3,blat.proc3825174.chain_1165,blat.proc3825174.chain_1166,blat.proc3825174.chain_1167	6
scaffold_13	alternate_exon	408348	408541	-	asmbl_9334,asmbl_9342,asmbl_9348	none	STRG.15444.2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360	7	STRG.15444.1,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	17
scaffold_22	alt_donor	10637557	10637558	-	asmbl_29610	none	STRG.25407.1,blat.proc3825160.chain_2562	2	STRG.25407.2,blat.proc3825160.chain_2563	2
scaffold_1	skipped_exon	5136946	5137638	+	asmbl_1698	none	STRG.321.2,blat.proc3825164.chain_410	2	blat.proc3825164.chain_412	1
scaffold_6	retained_intron	9091532	9091638	-	asmbl_48606	none	STRG.7786.2,blat.proc3825152.chain_156	2	STRG.7786.1,blat.proc3825152.chain_157	2
scaffold_26	spliced_intron	9045289	9045366	+	asmbl_35200,asmbl_35204	none	STRG.28471.1,STRG.28471.2,Trinity_GG_33066_c0_g1_i3,blat.proc3825178.chain_1595	4	Trinity_GG_33066_c0_g1_i1,blat.proc3825178.chain_1593	2
scaffold_4	retained_intron	15678206	15678313	-	asmbl_43113	none	blat.proc3825150.chain_1295	1	STRG.5151.1,STRG.5151.2,blat.proc3825150.chain_1296,blat.proc3825150.chain_1297,blat.proc3825150.chain_1298	5
scaffold_17	retained_intron	8626666	8626834	+	asmbl_19010,asmbl_19011	none	STRG.20477.2,Trinity_GG_28498_c0_g1_i1,blat.proc3825174.chain_1274	3	STRG.20477.1,Trinity_GG_28498_c0_g1_i2,blat.proc3825174.chain_1276	3
scaffold_6	starts_in_intron	3064725	3064725	+	asmbl_46810	none	STRG.7321.2,blat.proc3825166.chain_3513	2	STRG.7321.1,blat.proc3825166.chain_3512	2
scaffold_1	ends_in_intron	5206831	5206831	+	asmbl_1706,asmbl_1708,asmbl_1712	none	blat.proc3825164.chain_469,blat.proc3825164.chain_473,blat.proc3825164.chain_475	3	STRG.329.1,STRG.329.3,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_476	5
scaffold_19	retained_exon	13195378	13195451	-	asmbl_22617	none	Trinity_GG_12588_c1_g1_i6,blat.proc3825158.chain_3431	2	STRG.22653.1,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3436	7
scaffold_15	alt_donor	371137	371138	-	asmbl_13917	none	STRG.17891.2,blat.proc3825156.chain_2710	2	STRG.17891.1,blat.proc3825156.chain_2709	2
scaffold_13	retained_exon	11599669	11599743	+	asmbl_11291,asmbl_11294,asmbl_11295	none	blat.proc3825172.chain_1029,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	3	STRG.16316.1,STRG.16316.3,blat.proc3825172.chain_1028,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034	6
scaffold_9	skipped_exon	17495937	17497232	-	asmbl_55654	none	STRG.11841.1,Trinity_GG_6561_c0_g1_i2,blat.proc3825154.chain_344	3	STRG.11841.2,Trinity_GG_6561_c0_g1_i1,blat.proc3825154.chain_343	3
scaffold_21	alternate_exon	9925586	9926567	-	asmbl_27992	none	STRG.24461.5	1	STRG.24461.1,STRG.24461.3,STRG.24461.4,blat.proc3825160.chain_1641	4
scaffold_8	skipped_exon	16505056	16507019	-	asmbl_52420	none	STRG.10629.5	1	STRG.10629.1,STRG.10629.4,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	7
scaffold_18	alternate_exon	8883789	8885317	-	asmbl_20038	none	blat.proc3825158.chain_2468	1	STRG.21551.2	1
scaffold_14	retained_intron	6412534	6412614	+	asmbl_12078	none	blat.proc3825172.chain_1840	1	STRG.17089.1,blat.proc3825172.chain_1839	2
scaffold_14	retained_intron	6427617	6427975	-	asmbl_13129	none	blat.proc3825156.chain_1899	1	STRG.17091.1,blat.proc3825156.chain_1900	2
scaffold_3	retained_intron	1841145	1841393	+	asmbl_39891	none	STRG.3005.2,Trinity_GG_19022_c1_g1_i1,blat.proc3825164.chain_3257	3	STRG.3005.1,blat.proc3825164.chain_3256	2
scaffold_1	alt_donor	907397	907398	-	asmbl_35	none	STRG.48.3	1	STRG.48.1	1
scaffold_3	alt_donor	17843961	17843962	+	asmbl_40704,asmbl_40705,asmbl_40706	none	STRG.4004.1,STRG.4004.2,blat.proc3825166.chain_495,blat.proc3825166.chain_496,blat.proc3825166.chain_497	5	STRG.4004.3,STRG.4004.4	2
scaffold_3	alternate_exon	11298204	11298515	+	asmbl_40340	none	STRG.3556.1,blat.proc3825166.chain_94	2	STRG.3556.2,blat.proc3825166.chain_92	2
scaffold_20	skipped_exon	8431167	8431827	+	asmbl_26776	none	STRG.23391.2,blat.proc3825176.chain_537	2	STRG.23391.1,blat.proc3825176.chain_535	2
scaffold_11	alt_acceptor	8984394	8984395	-	asmbl_6898	none	STRG.13922.1,blat.proc3825154.chain_2469	2	STRG.13922.2	1
scaffold_6	alt_acceptor	12520224	12520225	-	asmbl_48814,asmbl_48815,asmbl_48816,asmbl_48818,asmbl_48819	none	STRG.8011.1,STRG.8011.2,STRG.8011.4,blat.proc3825152.chain_396,blat.proc3825152.chain_397,blat.proc3825152.chain_398	6	STRG.8011.3	1
scaffold_18	retained_intron	1887392	1887983	-	asmbl_19659	none	STRG.21081.6	1	STRG.21081.3,STRG.21081.7,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2014	5
scaffold_13	spliced_intron	4457825	4458511	+	asmbl_10796	none	STRG.15770.1,blat.proc3825172.chain_509	2	STRG.15770.2,STRG.15770.4,Trinity_GG_25976_c0_g1_i2,Trinity_GG_25976_c0_g2_i2,blat.proc3825172.chain_507,blat.proc3825172.chain_508	6
scaffold_21	alternate_exon	693823	694384	+	asmbl_28283	none	STRG.23756.1	1	STRG.23756.3,STRG.23756.4,Trinity_GG_30469_c0_g1_i1	3
scaffold_4	retained_exon	14982184	14982314	+	asmbl_41916	none	STRG.5107.1,blat.proc3825166.chain_1524	2	STRG.5107.3,blat.proc3825166.chain_1523	2
scaffold_11	alternate_exon	15079736	15084448	-	asmbl_7180	none	STRG.14277.1,blat.proc3825154.chain_2830	2	STRG.14277.2	1
scaffold_16	alt_acceptor	3742281	3742282	-	asmbl_16999	none	STRG.19180.2	1	STRG.19180.1,blat.proc3825158.chain_326	2
scaffold_1	retained_intron	21665391	21665422	-	asmbl_1214	none	STRG.1459.1,Trinity_GG_782_c0_g1_i1,blat.proc3825148.chain_1435	3	STRG.1459.2	1
scaffold_5	alt_donor	7739945	7739946	+	asmbl_45507	none	STRG.6160.2	1	STRG.6160.1,STRG.6160.3,blat.proc3825166.chain_2297	3
scaffold_15	spliced_intron	670210	670293	-	asmbl_13941	none	STRG.17932.3,blat.proc3825156.chain_2724	2	STRG.17932.2,blat.proc3825156.chain_2723	2
scaffold_3	alternate_exon	6189135	6189687	-	asmbl_38911	none	STRG.3266.4	1	STRG.3266.2,blat.proc3825148.chain_3123,blat.proc3825148.chain_3125	3
scaffold_3	spliced_intron	19885475	19886383	-	asmbl_39671,asmbl_39674	none	STRG.4100.1,STRG.4100.4,Trinity_GG_2243_c1_g1_i1,blat.proc3825150.chain_246	4	STRG.4100.3,Trinity_GG_2243_c1_g1_i2,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_245,blat.proc3825150.chain_248	5
scaffold_2	starts_in_intron	9786717	9786717	+	asmbl_24690	none	blat.proc3825164.chain_2361	1	STRG.2185.1,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	3
scaffold_4	alt_donor	14571048	14571049	+	asmbl_41889	none	STRG.5073.1,blat.proc3825166.chain_1432	2	STRG.5073.2,blat.proc3825166.chain_1431	2
scaffold_12	alt_acceptor	10617675	10617676	-	asmbl_8768	none	STRG.15045.3	1	STRG.15045.1,STRG.15045.2,blat.proc3825154.chain_3499	3
scaffold_17	alt_acceptor	9006456	9006457	+	asmbl_19056,asmbl_19058	none	STRG.20525.3,blat.proc3825174.chain_1322	2	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4
scaffold_19	alternate_exon	2780621	2780686	+	asmbl_21281,asmbl_21282	none	STRG.21962.4,STRG.21962.5	2	STRG.21962.1,STRG.21962.2,STRG.21962.3,blat.proc3825174.chain_2998	4
scaffold_16	retained_intron	10448430	10449544	+	asmbl_16535	none	STRG.19614.3,Trinity_GG_28027_c0_g1_i5,blat.proc3825174.chain_487,blat.proc3825174.chain_488	4	STRG.19614.2,STRG.19614.4,blat.proc3825174.chain_484	3
scaffold_13	ends_in_intron	4458450	4458450	+	asmbl_10795	none	blat.proc3825172.chain_506	1	STRG.15770.1,STRG.15770.3,blat.proc3825172.chain_509,blat.proc3825172.chain_511	4
scaffold_10	retained_intron	2787857	2787930	-	asmbl_4133	none	Trinity_GG_6692_c0_g1_i3,blat.proc3825154.chain_581	2	STRG.12105.1,Trinity_GG_6692_c0_g1_i1,Trinity_GG_6692_c0_g1_i6,blat.proc3825154.chain_580,blat.proc3825154.chain_582,blat.proc3825154.chain_583,blat.proc3825154.chain_585,blat.proc3825154.chain_586	8
scaffold_15	ends_in_intron	389650	389650	+	asmbl_14972	none	blat.proc3825172.chain_2620	1	STRG.17895.1,STRG.17895.2,blat.proc3825172.chain_2619,blat.proc3825172.chain_2621,blat.proc3825172.chain_2622,blat.proc3825172.chain_2623,blat.proc3825172.chain_2625	7
scaffold_27	spliced_intron	4123018	4123064	+	asmbl_36256	none	STRG.28870.2	1	STRG.28870.1,Trinity_GG_33282_c0_g1_i1,Trinity_GG_33282_c0_g1_i2,blat.proc3825178.chain_2024,blat.proc3825178.chain_2025	5
scaffold_3	spliced_intron	4304074	4304185	+	asmbl_40009	none	STRG.3130.2	1	STRG.3130.1	1
scaffold_14	retained_intron	1094470	1094586	+	asmbl_11800	none	STRG.16769.3,blat.proc3825172.chain_1477	2	STRG.16769.2,blat.proc3825172.chain_1480	2
scaffold_27	retained_intron	3741581	3742122	-	asmbl_36921,asmbl_36922	none	STRG.28841.3,blat.proc3825162.chain_2086,blat.proc3825162.chain_2087	3	STRG.28841.1,STRG.28841.2,blat.proc3825162.chain_2085,blat.proc3825162.chain_2088	4
scaffold_5	alt_donor	9579663	9579664	-	asmbl_44289	none	STRG.6278.1	1	blat.proc3825150.chain_2476	1
scaffold_22	alt_acceptor	4282986	4282987	-	asmbl_29238,asmbl_29239,asmbl_29241	none	STRG.24854.1,STRG.24854.2,STRG.24854.3,blat.proc3825160.chain_2084,blat.proc3825160.chain_2085	5	blat.proc3825160.chain_2083	1
scaffold_1	alt_donor	2127951	2127952	+	asmbl_1533,asmbl_1534	none	STRG.147.1,STRG.147.3,blat.proc3825164.chain_256,blat.proc3825164.chain_257	4	STRG.147.2,blat.proc3825164.chain_255	2
scaffold_24	spliced_intron	5881520	5881765	-	asmbl_32909,asmbl_32911	none	STRG.26654.1,blat.proc3825162.chain_36,blat.proc3825162.chain_37	3	STRG.26654.2,STRG.26654.3,blat.proc3825162.chain_34,blat.proc3825162.chain_35	4
scaffold_23	spliced_intron	2585219	2585676	-	asmbl_30743,asmbl_30744,asmbl_30745	none	STRG.25725.1,STRG.25725.2,Trinity_GG_14322_c1_g1_i3,blat.proc3825160.chain_2775,blat.proc3825160.chain_2777,blat.proc3825160.chain_2778	6	Trinity_GG_14322_c1_g1_i5	1
scaffold_10	ends_in_intron	10425068	10425068	-	asmbl_4731,asmbl_4733	none	STRG.12731.3,Trinity_GG_7118_c0_g1_i2,Trinity_GG_7118_c0_g1_i3,blat.proc3825154.chain_1335,blat.proc3825154.chain_1336	5	STRG.12731.1,STRG.12731.2,blat.proc3825154.chain_1337	3
scaffold_20	spliced_intron	1490221	1490256	+	asmbl_26417,asmbl_26418	none	STRG.22869.1,STRG.22869.2	2	STRG.22869.3,STRG.22869.4,STRG.22869.6	3
scaffold_11	spliced_intron	8716123	8716595	-	asmbl_6869	none	STRG.13902.1,blat.proc3825154.chain_2437	2	blat.proc3825154.chain_2441	1
scaffold_8	retained_exon	5762373	5762414	+	asmbl_52907	none	STRG.9995.1	1	Trinity_GG_22872_c0_g1_i1,blat.proc3825168.chain_2557	2
scaffold_1	starts_in_intron	8790095	8790095	+	asmbl_1941	none	Trinity_GG_17690_c0_g1_i3,blat.proc3825164.chain_740	2	STRG.585.1,blat.proc3825164.chain_738,blat.proc3825164.chain_739	3
scaffold_9	alt_acceptor	16631184	16631185	+	asmbl_54617	none	STRG.11803.2,Trinity_GG_23900_c0_g1_i1,blat.proc3825170.chain_603	3	STRG.11803.1,Trinity_GG_23900_c0_g1_i2,blat.proc3825170.chain_604	3
scaffold_8	retained_intron	6309352	6309452	+	asmbl_52964	none	blat.proc3825168.chain_2624	1	STRG.10033.1,Trinity_GG_22907_c0_g1_i9,blat.proc3825168.chain_2626,blat.proc3825168.chain_2627,blat.proc3825168.chain_2629	5
scaffold_17	retained_intron	11568197	11568238	+	asmbl_19237,asmbl_19238	none	STRG.20703.1,STRG.20703.4	2	STRG.20703.2,STRG.20703.3	2
scaffold_24	alt_donor	3754123	3754124	-	asmbl_32844	none	Trinity_GG_14862_c0_g1_i5,blat.proc3825160.chain_3696	2	STRG.26576.1,STRG.26576.2,blat.proc3825160.chain_3698	3
scaffold_11	alt_donor	10268656	10268657	-	asmbl_6988,asmbl_6989	none	STRG.14036.1,STRG.14036.3,blat.proc3825154.chain_2563,blat.proc3825154.chain_2565	4	STRG.14036.2,blat.proc3825154.chain_2562,blat.proc3825154.chain_2564	3
scaffold_7	starts_in_intron	15647939	15647939	+	asmbl_50458	none	STRG.9559.4,blat.proc3825168.chain_2091	2	STRG.9559.1,STRG.9559.2,STRG.9559.3,blat.proc3825168.chain_2088,blat.proc3825168.chain_2089,blat.proc3825168.chain_2090,blat.proc3825168.chain_2092	7
scaffold_26	retained_exon	1995175	1995532	+	asmbl_34727	none	blat.proc3825178.chain_995	1	STRG.27942.2	1
scaffold_18	starts_in_intron	9631730	9631730	-	asmbl_20069	none	STRG.21576.4	1	STRG.21576.1,STRG.21576.2,blat.proc3825158.chain_2477,blat.proc3825158.chain_2478,blat.proc3825158.chain_2480,blat.proc3825158.chain_2481	6
scaffold_2	alt_acceptor	16079560	16079561	-	asmbl_23662	none	STRG.2557.2,blat.proc3825148.chain_2488	2	STRG.2557.1,STRG.2557.3	2
scaffold_6	retained_exon	2481516	2481571	-	asmbl_48131	none	STRG.7245.3	1	STRG.7245.1,blat.proc3825150.chain_3360	2
scaffold_9	spliced_intron	12113015	12113296	+	asmbl_54414	none	blat.proc3825170.chain_368	1	STRG.11537.2,blat.proc3825170.chain_367	2
scaffold_10	retained_intron	15426722	15426763	+	asmbl_3685	none	STRG.13064.3	1	STRG.13064.1	1
scaffold_16	alt_donor	1510638	1510639	+	asmbl_16085	none	STRG.19099.3	1	STRG.19099.2,blat.proc3825174.chain_11	2
scaffold_6	retained_intron	8643223	8643354	+	asmbl_47169	none	blat.proc3825168.chain_188	1	STRG.7754.1,blat.proc3825168.chain_190	2
scaffold_14	alt_acceptor	13582196	13582197	-	asmbl_13643	none	STRG.17639.1,blat.proc3825156.chain_2487	2	STRG.17639.2,blat.proc3825156.chain_2488	2
scaffold_14	alt_acceptor	582569	582570	+	asmbl_11772	none	STRG.16740.3	1	STRG.16740.1,STRG.16740.2,STRG.16740.4,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	5
scaffold_5	alt_acceptor	14680587	14680588	+	asmbl_45955	none	STRG.6672.2,Trinity_GG_20943_c0_g1_i1,blat.proc3825166.chain_2837	3	Trinity_GG_20943_c0_g1_i2,blat.proc3825166.chain_2839	2
scaffold_5	spliced_intron	4696384	4696509	+	asmbl_45290	none	STRG.5925.3	1	STRG.5925.1	1
scaffold_15	ends_in_intron	9868960	9868960	+	asmbl_15422	none	STRG.18505.2,blat.proc3825172.chain_3114	2	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3108	3
scaffold_3	ends_in_intron	5266080	5266080	-	asmbl_38844	none	STRG.3218.2	1	STRG.3218.1,blat.proc3825148.chain_3056	2
scaffold_18	retained_intron	7662032	7662196	+	asmbl_20763,asmbl_20770	none	STRG.21471.2,Trinity_GG_29183_c0_g1_i7	2	STRG.21471.3	1
scaffold_5	starts_in_intron	11633822	11633822	-	asmbl_44418	none	blat.proc3825150.chain_2643	1	blat.proc3825150.chain_2641	1
scaffold_25	alt_acceptor	5567360	5567361	-	asmbl_34262	none	STRG.27457.2,Trinity_GG_15395_c0_g1_i1,blat.proc3825162.chain_819	3	STRG.27457.1,Trinity_GG_15395_c0_g1_i2,blat.proc3825162.chain_820	3
scaffold_4	spliced_intron	19674267	19674337	-	asmbl_43486	none	STRG.5558.1	1	STRG.5558.2	1
scaffold_4	retained_intron	16137284	16137576	-	asmbl_43140,asmbl_43143	none	STRG.5184.2,STRG.5184.3,blat.proc3825150.chain_1342	3	STRG.5184.4,blat.proc3825150.chain_1340	2
scaffold_11	skipped_exon	7403201	7404365	+	asmbl_5670	none	Trinity_GG_24841_c0_g1_i2,blat.proc3825170.chain_2214	2	STRG.13748.1,Trinity_GG_24841_c0_g1_i1,blat.proc3825170.chain_2213	3
scaffold_13	alt_donor	16161619	16161620	-	asmbl_10269	none	STRG.16658.1,blat.proc3825156.chain_1468	2	STRG.16658.2,blat.proc3825156.chain_1469	2
scaffold_6	alternate_exon	13225544	13228471	+	asmbl_47499,asmbl_47507	none	STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_577	3	blat.proc3825168.chain_574	1
scaffold_22	alt_donor	10040358	10040359	-	asmbl_29577	none	blat.proc3825160.chain_2460	1	STRG.25355.1,blat.proc3825160.chain_2459	2
scaffold_643	spliced_intron	1289	1370	-	asmbl_49488,asmbl_49490	none	STRG.30415.1,STRG.30415.3	2	STRG.30415.2,blat.proc3825162.chain_3524	2
scaffold_8	spliced_intron	7986635	7986847	-	asmbl_51941,asmbl_51942,asmbl_51944	none	STRG.10098.1,STRG.10098.2,Trinity_GG_5617_c0_g1_i2,Trinity_GG_5617_c0_g1_i4,blat.proc3825152.chain_2333,blat.proc3825152.chain_2334,blat.proc3825152.chain_2335	7	Trinity_GG_5617_c0_g1_i6,blat.proc3825152.chain_2337	2
scaffold_23	spliced_intron	362285	362464	-	asmbl_30590,asmbl_30597	none	STRG.25564.4,Trinity_GG_14303_c0_g1_i4,blat.proc3825160.chain_2721,blat.proc3825160.chain_2726	4	STRG.25564.1,STRG.25564.2,STRG.25564.3,Trinity_GG_14303_c0_g1_i3,blat.proc3825160.chain_2720,blat.proc3825160.chain_2723,blat.proc3825160.chain_2727	7
scaffold_13	retained_intron	16326282	16327028	-	asmbl_10290,asmbl_10292	none	STRG.16688.2,STRG.16688.3,blat.proc3825156.chain_1462	3	STRG.16688.1,blat.proc3825156.chain_1463	2
scaffold_17	ends_in_intron	6183292	6183292	-	asmbl_17968	none	Trinity_GG_11370_c0_g1_i3,blat.proc3825158.chain_1265	2	STRG.20293.3	1
scaffold_28	alt_acceptor	3391831	3391832	+	asmbl_37482	none	STRG.29559.3	1	STRG.29559.1,STRG.29559.2	2
scaffold_2	alt_donor	893112	893113	+	asmbl_24142	none	Trinity_GG_18212_c0_g2_i7,blat.proc3825164.chain_1728	2	STRG.1566.1,STRG.1566.2,STRG.1566.3,STRG.1566.4,STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725,blat.proc3825164.chain_1726,blat.proc3825164.chain_1727,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730,blat.proc3825164.chain_1731	12
scaffold_1	ends_in_intron	11122957	11122957	+	asmbl_2067,asmbl_2069	none	blat.proc3825164.chain_878,blat.proc3825164.chain_879	2	STRG.732.1,blat.proc3825164.chain_880	2
scaffold_13	retained_intron	8955171	8955244	+	asmbl_11163	none	STRG.16167.1,blat.proc3825172.chain_870	2	blat.proc3825172.chain_869	1
scaffold_21	retained_exon	7812103	7812165	-	asmbl_27856	none	blat.proc3825160.chain_1426	1	STRG.24317.3	1
scaffold_5	alt_donor	12237905	12237906	+	asmbl_45785	none	STRG.6462.2,blat.proc3825166.chain_2629	2	STRG.6462.1,blat.proc3825166.chain_2627	2
scaffold_28	ends_in_intron	3851245	3851245	-	asmbl_38178	none	Trinity_GG_16575_c0_g1_i2,blat.proc3825162.chain_2730	2	STRG.29584.1,STRG.29584.2	2
scaffold_16	alt_acceptor	9032989	9032990	+	asmbl_16458	none	STRG.19515.3	1	STRG.19515.1,STRG.19515.2,blat.proc3825174.chain_440,blat.proc3825174.chain_442	4
scaffold_23	alternate_exon	10204072	10204624	-	asmbl_31133	none	STRG.26231.1,blat.proc3825160.chain_3340	2	STRG.26231.3	1
scaffold_13	alt_acceptor	3098884	3098885	-	asmbl_9516	none	STRG.15617.2,blat.proc3825156.chain_460	2	STRG.15617.1	1
scaffold_5	spliced_intron	19031567	19031895	-	asmbl_44884,asmbl_44885,asmbl_44890,asmbl_44892	none	STRG.7022.2,STRG.7022.4,Trinity_GG_3910_c0_g1_i11,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133,blat.proc3825150.chain_3135	6	STRG.7022.6,blat.proc3825150.chain_3129	2
scaffold_27	starts_in_intron	343182	343182	-	asmbl_36671,asmbl_36673,asmbl_36675	none	STRG.28561.1,STRG.28561.2,blat.proc3825162.chain_1741,blat.proc3825162.chain_1743	4	STRG.28561.3,blat.proc3825162.chain_1742	2
scaffold_19	ends_in_intron	8746461	8746461	+	asmbl_21542	none	blat.proc3825174.chain_3327	1	STRG.22323.2	1
scaffold_5	alt_acceptor	1102485	1102486	-	asmbl_43823	none	STRG.5662.1,blat.proc3825150.chain_1888	2	STRG.5662.2	1
scaffold_12	alt_donor	12397460	12397461	-	asmbl_8880	none	STRG.15147.2	1	STRG.15147.1,STRG.15147.3,blat.proc3825154.chain_3647	3
scaffold_5	spliced_intron	8791720	8791899	+	asmbl_45572,asmbl_45574	none	STRG.6219.1,Trinity_GG_20718_c0_g1_i5,blat.proc3825166.chain_2446,blat.proc3825166.chain_2447	4	blat.proc3825166.chain_2448	1
scaffold_26	alternate_exon	7487708	7487820	-	asmbl_35707,asmbl_35708	none	STRG.28383.1,blat.proc3825162.chain_1609,blat.proc3825162.chain_1610	3	blat.proc3825162.chain_1611	1
scaffold_8	alt_acceptor	6018602	6018603	-	asmbl_51857	none	STRG.10012.2,Trinity_GG_5580_c0_g1_i1,blat.proc3825152.chain_2268	3	STRG.10012.1,Trinity_GG_5580_c0_g1_i2,blat.proc3825152.chain_2269	3
scaffold_5	starts_in_intron	10851594	10851594	+	asmbl_45702	none	blat.proc3825166.chain_2520	1	STRG.6368.1,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	3
scaffold_3	alternate_exon	19802481	19802509	+	asmbl_40773,asmbl_40774,asmbl_40775	none	STRG.4097.2,STRG.4097.3,STRG.4097.4	3	blat.proc3825166.chain_569	1
scaffold_5	spliced_intron	189929	189960	+	asmbl_45088,asmbl_45089,asmbl_45090	none	STRG.5587.3,STRG.5587.4,STRG.5587.5	3	STRG.5587.2,Trinity_GG_20359_c4_g1_i3,Trinity_GG_20359_c4_g1_i4,Trinity_GG_20359_c4_g1_i5,blat.proc3825166.chain_1850,blat.proc3825166.chain_1853	6
scaffold_18	alt_acceptor	2156611	2156612	-	asmbl_19712,asmbl_19713	none	STRG.21115.1,blat.proc3825158.chain_2028,blat.proc3825158.chain_2029	3	STRG.21115.2,blat.proc3825158.chain_2027	2
scaffold_5	alt_donor	11079986	11079987	+	asmbl_45726,asmbl_45729	none	STRG.6399.1,blat.proc3825166.chain_2599,blat.proc3825166.chain_2601	3	STRG.6399.2,STRG.6399.3,blat.proc3825166.chain_2600,blat.proc3825166.chain_2602	4
scaffold_9	alternate_exon	5756644	5756967	-	asmbl_55030	none	STRG.11147.2	1	STRG.11147.1	1
scaffold_1	retained_exon	6752807	6752968	+	asmbl_1851	none	STRG.465.2,blat.proc3825164.chain_605	2	STRG.465.3,blat.proc3825164.chain_604	2
scaffold_10	alt_donor	9375633	9375634	+	asmbl_3372	none	STRG.12676.1,blat.proc3825170.chain_1254	2	blat.proc3825170.chain_1253,blat.proc3825170.chain_1255	2
scaffold_14	ends_in_intron	2298691	2298691	+	asmbl_11856	none	Trinity_GG_26539_c6_g1_i1,blat.proc3825172.chain_1549	2	STRG.16845.1,STRG.16845.2	2
scaffold_21	alt_acceptor	3824094	3824095	-	asmbl_27547,asmbl_27550	none	STRG.23974.1,blat.proc3825160.chain_1115,blat.proc3825160.chain_1117	3	STRG.23974.2,STRG.23974.3,blat.proc3825160.chain_1116,blat.proc3825160.chain_1119	4
scaffold_2	alt_acceptor	7405743	7405744	-	asmbl_23251,asmbl_23252,asmbl_23253,asmbl_23254,asmbl_23256	none	STRG.2065.1,STRG.2065.3,STRG.2065.5,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i4,Trinity_GG_1101_c0_g1_i5,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1982,blat.proc3825148.chain_1983,blat.proc3825148.chain_1985,blat.proc3825148.chain_1986	11	STRG.2065.4	1
scaffold_28	retained_intron	2198918	2199018	+	asmbl_37345,asmbl_37346	none	STRG.29390.3,Trinity_GG_33584_c1_g1_i2,blat.proc3825178.chain_2546	3	STRG.29390.4,Trinity_GG_33584_c1_g1_i1,blat.proc3825178.chain_2545	3
scaffold_12	spliced_intron	6429911	6430170	+	asmbl_7686	none	STRG.14755.1,blat.proc3825170.chain_3263	2	blat.proc3825170.chain_3264	1
scaffold_28	starts_in_intron	2812295	2812295	-	asmbl_38091,asmbl_38092	none	STRG.29471.3,STRG.29471.4	2	STRG.29471.1,STRG.29471.2,blat.proc3825162.chain_2598,blat.proc3825162.chain_2599	4
scaffold_11	retained_intron	11640396	11641468	+	asmbl_5984,asmbl_5986,asmbl_5987,asmbl_5988	none	blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2640	4	STRG.14090.2	1
scaffold_13	alt_acceptor	732828	732829	+	asmbl_10506,asmbl_10508	none	STRG.15459.1,STRG.15459.3,blat.proc3825172.chain_122	3	STRG.15459.2	1
scaffold_5	ends_in_intron	13143729	13143729	-	asmbl_44527	none	blat.proc3825150.chain_2748	1	STRG.6557.1,blat.proc3825150.chain_2747	2
scaffold_11	spliced_intron	5258825	5258854	+	asmbl_5559	none	STRG.13614.2	1	STRG.13614.3,Trinity_GG_24827_c1_g1_i1	2
scaffold_9	alternate_exon	12630716	12631106	+	asmbl_54453	none	STRG.11586.4	1	STRG.11586.1,STRG.11586.2,blat.proc3825170.chain_404,blat.proc3825170.chain_406	4
scaffold_23	spliced_intron	9886338	9886445	+	asmbl_31804,asmbl_31806	none	STRG.26189.1,blat.proc3825176.chain_3137,blat.proc3825176.chain_3139	3	Trinity_GG_31775_c0_g1_i4,blat.proc3825176.chain_3140	2
scaffold_27	spliced_intron	2786649	2786780	+	asmbl_36106,asmbl_36107,asmbl_36108	none	STRG.28759.1,blat.proc3825178.chain_1827,blat.proc3825178.chain_1829,blat.proc3825178.chain_1830	4	Trinity_GG_33192_c1_g1_i6,blat.proc3825178.chain_1828	2
scaffold_13	retained_exon	903026	903309	-	asmbl_9383	none	blat.proc3825156.chain_264	1	STRG.15470.1,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271,blat.proc3825156.chain_272	10
scaffold_1	spliced_intron	20352061	20352267	+	asmbl_2619,asmbl_2622,asmbl_2623,asmbl_2624	none	STRG.1396.1,STRG.1396.6,STRG.1396.8,blat.proc3825164.chain_1584	4	blat.proc3825164.chain_1585,blat.proc3825164.chain_1587,blat.proc3825164.chain_1588	3
scaffold_17	retained_exon	607924	607947	-	asmbl_17630,asmbl_17631,asmbl_17633	none	STRG.19912.1,STRG.19912.2,STRG.19912.4	3	STRG.19912.3	1
scaffold_9	alternate_exon	5659854	5660852	+	asmbl_54059	none	STRG.11133.1,blat.proc3825168.chain_3679	2	STRG.11133.2	1
scaffold_11	alternate_exon	4686717	4690785	-	asmbl_6609,asmbl_6610,asmbl_6611,asmbl_6615	none	STRG.13564.1,STRG.13564.2,STRG.13564.4,STRG.13564.5,blat.proc3825154.chain_2144,blat.proc3825154.chain_2147	6	blat.proc3825154.chain_2145	1
scaffold_17	alternate_exon	9845951	9852012	-	asmbl_18206	none	STRG.20604.1,blat.proc3825158.chain_1642	2	STRG.20604.3,Trinity_GG_11598_c1_g1_i1,blat.proc3825158.chain_1644	3
scaffold_26	ends_in_intron	5035987	5035987	+	asmbl_34942,asmbl_34956	none	STRG.28240.4,blat.proc3825178.chain_1175,blat.proc3825178.chain_1181	3	STRG.28240.1,STRG.28240.2,STRG.28240.3,blat.proc3825178.chain_1165,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1177,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180,blat.proc3825178.chain_1182	12
scaffold_7	alt_acceptor	1236327	1236328	+	asmbl_49588,asmbl_49589,asmbl_49590,asmbl_49592,asmbl_49593,asmbl_49594	none	STRG.8637.1,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i4,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072,blat.proc3825168.chain_1074,blat.proc3825168.chain_1079	9	STRG.8637.4,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i15,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	8
scaffold_25	alternate_exon	6164215	6165870	+	asmbl_33595	none	STRG.27502.1,blat.proc3825178.chain_603	2	STRG.27502.2,blat.proc3825178.chain_600	2
scaffold_12	starts_in_intron	10584370	10584370	+	asmbl_7940	none	Trinity_GG_25585_c0_g1_i1	1	STRG.15029.1,STRG.15029.2	2
scaffold_9	alt_donor	13297277	13297278	-	asmbl_55421	none	STRG.11628.5	1	STRG.11628.1,STRG.11628.2,STRG.11628.3	3
scaffold_4	retained_exon	16873536	16873637	-	asmbl_43225,asmbl_43227	none	STRG.5273.1,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	3	STRG.5273.2	1
scaffold_2	spliced_intron	950718	951959	+	asmbl_24166	none	STRG.1574.4	1	Trinity_GG_18238_c0_g1_i8	1
scaffold_11	alternate_exon	4333202	4335979	-	asmbl_6597,asmbl_6599	none	blat.proc3825154.chain_2136,blat.proc3825154.chain_2137	2	STRG.13525.1,blat.proc3825154.chain_2133,blat.proc3825154.chain_2135	3
scaffold_16	starts_in_intron	1252335	1252335	-	asmbl_16935,asmbl_16941	none	STRG.19087.4,blat.proc3825158.chain_225	2	STRG.19087.1,STRG.19087.2,blat.proc3825158.chain_222,blat.proc3825158.chain_224	4
scaffold_23	alt_acceptor	10988426	10988427	-	asmbl_31185,asmbl_31187,asmbl_31188	none	STRG.26306.1,STRG.26306.2,blat.proc3825160.chain_3397,blat.proc3825160.chain_3398	4	Trinity_GG_14683_c0_g1_i5,blat.proc3825160.chain_3396	2
scaffold_7	spliced_intron	9708727	9708817	-	asmbl_51057	none	STRG.9158.1,blat.proc3825152.chain_1494	2	STRG.9158.2	1
scaffold_15	alternate_exon	8044084	8044179	-	asmbl_14326	none	STRG.18380.2	1	STRG.18380.1,blat.proc3825156.chain_3224	2
scaffold_4	retained_intron	15728040	15728147	-	asmbl_43121	none	blat.proc3825150.chain_1292	1	STRG.5162.1,blat.proc3825150.chain_1293,blat.proc3825150.chain_1294	3
scaffold_6	alternate_exon	3051355	3053246	+	asmbl_46798,asmbl_46802,asmbl_46803	none	STRG.7319.1,blat.proc3825166.chain_3519,blat.proc3825166.chain_3520,blat.proc3825166.chain_3523	4	STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3522	3
scaffold_19	alternate_exon	3669985	3670196	-	asmbl_22117	none	STRG.22046.2,Trinity_GG_12309_c0_g1_i3,blat.proc3825158.chain_2897	3	STRG.22046.1,Trinity_GG_12309_c0_g1_i1,Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2893,blat.proc3825158.chain_2894,blat.proc3825158.chain_2898	6
scaffold_11	alternate_exon	4751650	4751704	+	asmbl_5517	none	blat.proc3825170.chain_2101	1	STRG.13573.1,STRG.13573.2,blat.proc3825170.chain_2102	3
scaffold_3	skipped_exon	13424800	13425865	-	asmbl_39259,asmbl_39262,asmbl_39263,asmbl_39265	none	STRG.3693.1,STRG.3693.3,blat.proc3825148.chain_3584,blat.proc3825148.chain_3585,blat.proc3825148.chain_3590	5	STRG.3693.4	1
scaffold_17	alternate_exon	6823485	6824032	-	asmbl_17989,asmbl_17990	none	STRG.20345.3,Trinity_GG_11448_c1_g1_i2,blat.proc3825158.chain_1387,blat.proc3825158.chain_1397	4	blat.proc3825158.chain_1392,blat.proc3825158.chain_1393	2
scaffold_9	alt_acceptor	75689	75690	-	asmbl_54799	none	STRG.10766.2	1	STRG.10766.1,blat.proc3825152.chain_3065	2
scaffold_1	spliced_intron	5706882	5706999	+	asmbl_1753,asmbl_1755,asmbl_1757	none	STRG.372.1,blat.proc3825164.chain_496,blat.proc3825164.chain_497,blat.proc3825164.chain_498	4	blat.proc3825164.chain_500	1
scaffold_10	skipped_exon	17682892	17684424	+	asmbl_3788	none	STRG.13220.1	1	STRG.13220.2	1
scaffold_15	ends_in_intron	12393927	12393927	-	asmbl_14573	none	Trinity_GG_10480_c0_g1_i14,blat.proc3825156.chain_3517	2	STRG.18695.2,STRG.18695.3,STRG.18695.4,blat.proc3825156.chain_3518	4
scaffold_2	alt_acceptor	16288292	16288293	+	asmbl_25108,asmbl_25109,asmbl_25112,asmbl_25114	none	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2851,blat.proc3825164.chain_2852	4	blat.proc3825164.chain_2853	1
scaffold_18	retained_intron	9170256	9170424	+	asmbl_20880	none	Trinity_GG_29198_c0_g1_i1,blat.proc3825174.chain_2558	2	STRG.21559.1,Trinity_GG_29198_c0_g1_i3,blat.proc3825174.chain_2559	3
scaffold_18	alt_donor	13150281	13150282	-	asmbl_20166	none	STRG.21756.3	1	STRG.21756.1	1
scaffold_3	retained_intron	4275917	4276088	+	asmbl_39991	none	STRG.3125.2,blat.proc3825164.chain_3363	2	STRG.3125.1,blat.proc3825164.chain_3362	2
scaffold_22	skipped_exon	3790101	3790999	-	asmbl_29187,asmbl_29189	none	STRG.24812.1,STRG.24812.2	2	STRG.24812.3,blat.proc3825160.chain_1934,blat.proc3825160.chain_1935	3
scaffold_14	ends_in_intron	10530660	10530660	+	asmbl_12332	none	STRG.17409.1	1	blat.proc3825172.chain_2105	1
scaffold_26	retained_intron	4440010	4440139	+	asmbl_34899,asmbl_34900	none	STRG.28147.1,STRG.28147.2,blat.proc3825178.chain_1233	3	blat.proc3825178.chain_1235	1
scaffold_28	spliced_intron	4562120	4562213	-	asmbl_38215,asmbl_38217	none	STRG.29632.1,Trinity_GG_16613_c0_g1_i1,Trinity_GG_16613_c0_g1_i4,blat.proc3825162.chain_2816,blat.proc3825162.chain_2817	5	STRG.29632.2,Trinity_GG_16613_c0_g1_i3,blat.proc3825162.chain_2815	3
scaffold_10	retained_intron	5857032	5858338	-	asmbl_4393	none	Trinity_GG_6938_c0_g1_i1,Trinity_GG_6938_c0_g2_i1,blat.proc3825154.chain_981,blat.proc3825154.chain_984	4	STRG.12409.1,STRG.12409.2,STRG.12409.3,blat.proc3825154.chain_985	4
scaffold_15	alternate_exon	12030213	12032194	+	asmbl_15515	none	STRG.18644.3,Trinity_GG_27537_c0_g1_i4,blat.proc3825172.chain_3277	3	STRG.18644.1,Trinity_GG_27537_c0_g1_i1,Trinity_GG_27537_c0_g1_i3,blat.proc3825172.chain_3278,blat.proc3825172.chain_3279	5
scaffold_4	starts_in_intron	4369761	4369761	+	asmbl_41242	none	blat.proc3825166.chain_789	1	STRG.4338.1,blat.proc3825166.chain_788,blat.proc3825166.chain_790	3
scaffold_6	alt_donor	3320915	3320916	-	asmbl_48248	none	blat.proc3825150.chain_3424	1	STRG.7338.1,STRG.7338.3,STRG.7338.4,blat.proc3825150.chain_3423,blat.proc3825150.chain_3425	5
scaffold_8	alt_acceptor	9001528	9001529	+	asmbl_53045	none	STRG.10156.2,Trinity_GG_22923_c0_g1_i1,blat.proc3825168.chain_2650	3	STRG.10156.1,Trinity_GG_22923_c0_g1_i3,blat.proc3825168.chain_2651	3
scaffold_20	skipped_exon	11480461	11483459	+	asmbl_27057	none	STRG.23653.4	1	STRG.23653.1,Trinity_GG_30405_c0_g1_i1,blat.proc3825176.chain_845	3
scaffold_13	alt_donor	3330955	3330956	-	asmbl_9532	none	STRG.15642.1,blat.proc3825156.chain_519	2	STRG.15642.2,blat.proc3825156.chain_520	2
scaffold_21	skipped_exon	257153	257555	-	asmbl_27286,asmbl_27290,asmbl_27292,asmbl_27293,asmbl_27294,asmbl_27296,asmbl_27297	none	blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_812	7	STRG.23725.6	1
scaffold_1	spliced_intron	5705379	5705535	+	asmbl_1753,asmbl_1756	none	STRG.372.1,blat.proc3825164.chain_496,blat.proc3825164.chain_500	3	blat.proc3825164.chain_497,blat.proc3825164.chain_498	2
scaffold_10	retained_intron	8331786	8332060	-	asmbl_4583	none	blat.proc3825154.chain_1190	1	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1187,blat.proc3825154.chain_1189,blat.proc3825154.chain_1192	5
scaffold_9	alt_acceptor	11876466	11876467	+	asmbl_54389	none	STRG.11509.1	1	Trinity_GG_23736_c0_g1_i2,blat.proc3825170.chain_329	2
scaffold_18	alt_donor	1328564	1328565	+	asmbl_20336,asmbl_20337,asmbl_20340,asmbl_20341	none	STRG.21023.1,STRG.21023.2,blat.proc3825174.chain_1860,blat.proc3825174.chain_1861,blat.proc3825174.chain_1862	5	STRG.21023.3	1
scaffold_9	retained_exon	5083119	5083286	+	asmbl_53989,asmbl_53991,asmbl_53992	none	STRG.11088.1,STRG.11088.3,STRG.11088.4	3	STRG.11088.2	1
scaffold_8	alternate_exon	11048797	11048921	+	asmbl_53189,asmbl_53191	none	STRG.10316.1,blat.proc3825168.chain_2890,blat.proc3825168.chain_2891	3	STRG.10316.2,blat.proc3825168.chain_2892	2
scaffold_7	starts_in_intron	8710753	8710753	-	asmbl_51033	none	Trinity_GG_5147_c0_g1_i5,blat.proc3825152.chain_1505	2	STRG.9112.1,STRG.9112.2,blat.proc3825152.chain_1503,blat.proc3825152.chain_1504	4
scaffold_18	spliced_intron	13150203	13150282	-	asmbl_20166	none	STRG.21756.3	1	STRG.21756.2	1
scaffold_1325	retained_intron	2091	2231	+	asmbl_11713,asmbl_11714	none	STRG.30586.2,STRG.30586.3	2	STRG.30586.1	1
scaffold_21	spliced_intron	1654934	1655150	+	asmbl_28346,asmbl_28347,asmbl_28351	none	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058,blat.proc3825176.chain_1059	6	blat.proc3825176.chain_1056	1
scaffold_5	alt_donor	7320374	7320375	+	asmbl_45493	none	Trinity_GG_20663_c0_g2_i1	1	STRG.6129.2	1
scaffold_13	starts_in_intron	397121	397121	-	asmbl_9351,asmbl_9353	none	STRG.15444.5,STRG.15444.6	2	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i3,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366,blat.proc3825156.chain_369,blat.proc3825156.chain_370,blat.proc3825156.chain_371	30
scaffold_15	spliced_intron	16366344	16366420	-	asmbl_14832	none	STRG.18990.1,Trinity_GG_10664_c0_g1_i1,blat.proc3825158.chain_107	3	STRG.18990.2,Trinity_GG_10664_c0_g1_i2,blat.proc3825158.chain_106	3
scaffold_20	alt_acceptor	10385037	10385038	+	asmbl_26954,asmbl_26955,asmbl_26959,asmbl_26961	none	STRG.23583.1,STRG.23583.2,STRG.23583.3,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_670,blat.proc3825176.chain_671	7	STRG.23583.4,blat.proc3825176.chain_668	2
scaffold_19	spliced_intron	12574951	12575303	-	asmbl_22521	none	STRG.22584.3	1	blat.proc3825158.chain_3374	1
scaffold_18	starts_in_intron	3792221	3792221	-	asmbl_19776,asmbl_19779	none	STRG.21197.2,blat.proc3825158.chain_2173	2	STRG.21197.1,STRG.21197.3,blat.proc3825158.chain_2176,blat.proc3825158.chain_2177,blat.proc3825158.chain_2178,blat.proc3825158.chain_2179	6
scaffold_25	alt_acceptor	434816	434817	+	asmbl_33332	none	STRG.27088.1,blat.proc3825178.chain_280	2	Trinity_GG_32275_c0_g1_i2,blat.proc3825178.chain_281	2
scaffold_25	ends_in_intron	3115514	3115514	-	asmbl_34098	none	Trinity_GG_15237_c0_g1_i1	1	STRG.27266.1	1
scaffold_8	retained_intron	16499324	16499685	-	asmbl_52411,asmbl_52413,asmbl_52418,asmbl_52422	none	STRG.10629.1,STRG.10629.2,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2939	5	STRG.10629.5	1
scaffold_23	spliced_intron	10020609	10020721	+	asmbl_31823,asmbl_31826	none	STRG.26206.1,blat.proc3825176.chain_3103,blat.proc3825176.chain_3104	3	blat.proc3825176.chain_3106	1
scaffold_18	retained_intron	9629358	9629525	-	asmbl_20069	none	STRG.21576.4	1	STRG.21576.1,STRG.21576.2,blat.proc3825158.chain_2477,blat.proc3825158.chain_2480,blat.proc3825158.chain_2481	5
scaffold_18	alt_acceptor	1997966	1997967	-	asmbl_19683	none	STRG.21103.2	1	STRG.21103.1,blat.proc3825158.chain_2053	2
scaffold_9	retained_intron	537756	537789	-	asmbl_54800	none	STRG.10782.1,Trinity_GG_6002_c0_g1_i1,blat.proc3825152.chain_3071	3	STRG.10782.2	1
scaffold_5	spliced_intron	16246188	16246207	+	asmbl_46065	none	STRG.6810.2	1	STRG.6810.1,Trinity_GG_20992_c0_g1_i2,Trinity_GG_20992_c0_g1_i4,blat.proc3825166.chain_2913	4
scaffold_13	retained_intron	6434028	6434177	-	asmbl_9791	none	blat.proc3825156.chain_846	1	STRG.15943.1,STRG.15943.2,blat.proc3825156.chain_845,blat.proc3825156.chain_847,blat.proc3825156.chain_850	5
scaffold_8	spliced_intron	10793464	10793568	+	asmbl_53182	none	STRG.10305.3,blat.proc3825168.chain_2847	2	STRG.10305.1,blat.proc3825168.chain_2848	2
scaffold_13	spliced_intron	6623425	6623614	+	asmbl_10957,asmbl_10959	none	Trinity_GG_26066_c0_g1_i2,Trinity_GG_26066_c0_g1_i3,blat.proc3825172.chain_685,blat.proc3825172.chain_687	4	Trinity_GG_26066_c0_g1_i1,blat.proc3825172.chain_684	2
scaffold_9	alt_acceptor	15212300	15212301	-	asmbl_55513	none	STRG.11725.3	1	STRG.11725.1,STRG.11725.2,blat.proc3825154.chain_190,blat.proc3825154.chain_191	4
scaffold_1	alternate_exon	3565059	3565329	+	asmbl_1605	none	STRG.224.2,blat.proc3825164.chain_298	2	STRG.224.1,blat.proc3825164.chain_297	2
scaffold_17	alt_acceptor	2432602	2432603	+	asmbl_18653	none	STRG.20033.2,Trinity_GG_28268_c0_g1_i1,blat.proc3825174.chain_879	3	STRG.20033.1,Trinity_GG_28268_c0_g1_i2,blat.proc3825174.chain_880	3
scaffold_27	alternate_exon	9094542	9098453	-	asmbl_37125	none	STRG.29162.2,blat.proc3825162.chain_2296	2	STRG.29162.1,Trinity_GG_16303_c0_g1_i3,blat.proc3825162.chain_2295	3
scaffold_23	alt_donor	5305556	5305557	+	asmbl_31559,asmbl_31562	none	STRG.25910.1,blat.proc3825176.chain_2854,blat.proc3825176.chain_2857	3	STRG.25910.2,blat.proc3825176.chain_2856	2
scaffold_3	skipped_exon	3734522	3736476	+	asmbl_39967	none	STRG.3101.2,blat.proc3825164.chain_3308	2	STRG.3101.1,blat.proc3825164.chain_3309	2
scaffold_18	ends_in_intron	2538991	2538991	+	asmbl_20414	none	blat.proc3825174.chain_2034	1	STRG.21125.1,STRG.21125.2,blat.proc3825174.chain_2033	3
scaffold_11	retained_intron	13256180	13256322	+	asmbl_6042,asmbl_6043	none	STRG.14199.1,Trinity_GG_25137_c0_g1_i5,blat.proc3825170.chain_2731,blat.proc3825170.chain_2732	4	STRG.14199.2,blat.proc3825170.chain_2729	2
scaffold_300	alternate_exon	1865	2058	+	asmbl_40905	none	blat.proc3825178.chain_3364	1	STRG.30272.1,STRG.30272.2,STRG.30272.3,blat.proc3825178.chain_3363,blat.proc3825178.chain_3365	5
scaffold_17	retained_intron	6684218	6684386	+	asmbl_18864	none	STRG.20322.2,blat.proc3825174.chain_1156	2	STRG.20322.3,blat.proc3825174.chain_1157	2
scaffold_5	spliced_intron	4683007	4683535	-	asmbl_43983,asmbl_43989,asmbl_43992,asmbl_43993,asmbl_43995	none	STRG.5929.1,blat.proc3825150.chain_2075,blat.proc3825150.chain_2078,blat.proc3825150.chain_2081,blat.proc3825150.chain_2083,blat.proc3825150.chain_2085	6	STRG.5929.2,blat.proc3825150.chain_2076	2
scaffold_28	spliced_intron	2198918	2199018	+	asmbl_37344,asmbl_37347	none	STRG.29390.4,Trinity_GG_33584_c1_g1_i1,blat.proc3825178.chain_2545	3	STRG.29390.3,Trinity_GG_33584_c1_g1_i2,blat.proc3825178.chain_2546	3
scaffold_28	retained_intron	7359508	7359739	+	asmbl_37668	none	Trinity_GG_33819_c0_g1_i6,blat.proc3825178.chain_2955	2	STRG.29807.1,Trinity_GG_33819_c0_g1_i3,blat.proc3825178.chain_2956	3
scaffold_13	skipped_exon	12460703	12461376	-	asmbl_10138	none	blat.proc3825156.chain_1193	1	STRG.16372.2,STRG.16372.3,blat.proc3825156.chain_1192	3
scaffold_5	ends_in_intron	15505585	15505585	-	asmbl_44681	none	blat.proc3825150.chain_2929	1	STRG.6740.1,STRG.6740.2,blat.proc3825150.chain_2928,blat.proc3825150.chain_2930,blat.proc3825150.chain_2931,blat.proc3825150.chain_2932	6
scaffold_22	retained_intron	958386	958490	+	asmbl_29906	none	Trinity_GG_31006_c0_g1_i3,blat.proc3825176.chain_1892	2	STRG.24741.1,Trinity_GG_31006_c0_g1_i1,blat.proc3825176.chain_1893	3
scaffold_26	alternate_exon	7485966	7487923	+	asmbl_35117	none	STRG.28384.2,blat.proc3825178.chain_1472	2	STRG.28384.4,Trinity_GG_33001_c0_g2_i1,blat.proc3825178.chain_1473	3
scaffold_22	alternate_exon	6155975	6156065	-	asmbl_29311	none	STRG.24977.3	1	STRG.24977.1,STRG.24977.2,blat.proc3825160.chain_2105,blat.proc3825160.chain_2106,blat.proc3825160.chain_2107	5
scaffold_1	retained_intron	13890935	13891127	+	asmbl_2321,asmbl_2325	none	STRG.997.1,blat.proc3825164.chain_1168,blat.proc3825164.chain_1169	3	STRG.997.2,STRG.997.3,STRG.997.4,blat.proc3825164.chain_1165,blat.proc3825164.chain_1167,blat.proc3825164.chain_1170	6
scaffold_18	starts_in_intron	5785308	5785308	+	asmbl_20606	none	blat.proc3825174.chain_2312	1	STRG.21328.1,STRG.21328.2,blat.proc3825174.chain_2310,blat.proc3825174.chain_2311,blat.proc3825174.chain_2314	5
scaffold_10	alt_acceptor	2721454	2721455	+	asmbl_3000	none	Trinity_GG_24012_c0_g1_i3,blat.proc3825170.chain_792	2	STRG.12090.1,STRG.12090.2,Trinity_GG_24012_c0_g1_i4,blat.proc3825170.chain_794,blat.proc3825170.chain_795	5
scaffold_13	retained_intron	6762160	6762916	+	asmbl_10969,asmbl_10970,asmbl_10972	none	STRG.15967.1,STRG.15967.2,Trinity_GG_26054_c0_g1_i2,blat.proc3825172.chain_650,blat.proc3825172.chain_651	5	blat.proc3825172.chain_649	1
scaffold_12	alt_donor	1205437	1205438	-	asmbl_8293	none	blat.proc3825170.chain_3007	1	STRG.14456.1	1
scaffold_7	spliced_intron	6205363	6205464	+	asmbl_49853	none	STRG.8919.2	1	STRG.8919.1,Trinity_GG_22235_c1_g1_i1,blat.proc3825168.chain_1418	3
scaffold_4	spliced_intron	19753353	19753666	+	asmbl_42160,asmbl_42161	none	STRG.5564.1,STRG.5564.3,Trinity_GG_20352_c0_g1_i3,Trinity_GG_20352_c0_g1_i4,blat.proc3825166.chain_1824,blat.proc3825166.chain_1825	6	STRG.5564.2,Trinity_GG_20352_c0_g1_i1,blat.proc3825166.chain_1826	3
scaffold_8	alt_acceptor	9695267	9695268	+	asmbl_53099,asmbl_53100	none	STRG.10217.1,STRG.10217.3,blat.proc3825168.chain_2768,blat.proc3825168.chain_2769	4	STRG.10217.2	1
scaffold_2	retained_intron	883173	884738	+	asmbl_24125	none	STRG.1564.2	1	blat.proc3825164.chain_1623,blat.proc3825164.chain_1624	2
scaffold_13	starts_in_intron	6806646	6806646	+	asmbl_10977	none	Trinity_GG_26083_c0_g1_i1,blat.proc3825172.chain_722	2	STRG.15970.1,STRG.15970.2,blat.proc3825172.chain_720,blat.proc3825172.chain_721,blat.proc3825172.chain_723	5
scaffold_4	skipped_exon	7150686	7151689	+	asmbl_41468,asmbl_41469	none	STRG.4559.1,STRG.4559.4	2	STRG.4559.2,STRG.4559.3,STRG.4559.5,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	5
scaffold_9	alt_acceptor	4206164	4206165	+	asmbl_53941	none	STRG.11024.3	1	STRG.11024.4,blat.proc3825168.chain_3484	2
scaffold_5	retained_intron	16246188	16246207	+	asmbl_46064	none	STRG.6810.1,Trinity_GG_20992_c0_g1_i2,Trinity_GG_20992_c0_g1_i4,blat.proc3825166.chain_2913	4	STRG.6810.2	1
scaffold_9	starts_in_intron	12155734	12155734	-	asmbl_55358	none	blat.proc3825152.chain_3724	1	STRG.11535.1,blat.proc3825152.chain_3723	2
scaffold_3	starts_in_intron	19883060	19883060	-	asmbl_39675	none	STRG.4100.2,blat.proc3825150.chain_241	2	STRG.4100.1,STRG.4100.3,STRG.4100.4,blat.proc3825150.chain_242	4
scaffold_10	alt_donor	5156743	5156744	+	asmbl_3142	none	STRG.12338.1,blat.proc3825170.chain_1029	2	blat.proc3825170.chain_1028	1
scaffold_10	skipped_exon	986771	987975	-	asmbl_4025	none	STRG.11983.3	1	STRG.11983.1,STRG.11983.2,blat.proc3825154.chain_497	3
scaffold_5	spliced_intron	14680454	14680588	+	asmbl_45954	none	STRG.6672.1,Trinity_GG_20943_c0_g1_i4,blat.proc3825166.chain_2838	3	Trinity_GG_20943_c0_g1_i2,blat.proc3825166.chain_2839	2
scaffold_14	spliced_intron	8755233	8755448	-	asmbl_13345	none	blat.proc3825156.chain_2094	1	STRG.17312.1,STRG.17312.2	2
scaffold_11	alt_donor	5501897	5501898	-	asmbl_6667	none	blat.proc3825154.chain_2130	1	STRG.13620.1,blat.proc3825154.chain_2128	2
scaffold_6	ends_in_intron	17379848	17379848	+	asmbl_47746	none	blat.proc3825168.chain_905	1	STRG.8444.1,STRG.8444.2,Trinity_GG_21955_c0_g1_i4,blat.proc3825168.chain_907	4
scaffold_5	retained_intron	13110778	13111063	+	asmbl_45855	none	Trinity_GG_20856_c0_g1_i1,blat.proc3825166.chain_2702	2	STRG.6548.1,blat.proc3825166.chain_2701	2
scaffold_16	alt_acceptor	3568783	3568784	-	asmbl_16986	none	STRG.19175.1,Trinity_GG_10767_c0_g1_i5,blat.proc3825158.chain_305	3	STRG.19175.2,STRG.19175.3,Trinity_GG_10767_c0_g1_i8,blat.proc3825158.chain_306	4
scaffold_4	ends_in_intron	16578276	16578276	+	asmbl_41979,asmbl_41980	none	blat.proc3825166.chain_1569,blat.proc3825166.chain_1570	2	STRG.5236.1,STRG.5236.2,blat.proc3825166.chain_1571,blat.proc3825166.chain_1572,blat.proc3825166.chain_1573	5
scaffold_18	retained_intron	3220749	3220823	+	asmbl_20452	none	blat.proc3825174.chain_2094	1	STRG.21164.1,blat.proc3825174.chain_2095	2
scaffold_10	retained_intron	1425275	1425575	+	asmbl_2935,asmbl_2936	none	STRG.12016.5,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_760,blat.proc3825170.chain_762	4	STRG.12016.1,STRG.12016.2,STRG.12016.3,STRG.12016.4,Trinity_GG_23995_c0_g1_i3,Trinity_GG_23995_c0_g1_i4,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_759,blat.proc3825170.chain_761,blat.proc3825170.chain_763,blat.proc3825170.chain_764,blat.proc3825170.chain_765	12
scaffold_4	retained_exon	16882857	16882985	-	asmbl_43233	none	STRG.5278.2	1	STRG.5278.1,Trinity_GG_2939_c0_g1_i1,blat.proc3825150.chain_1434	3
scaffold_18	alt_acceptor	5788379	5788380	+	asmbl_20603	none	STRG.21328.2,blat.proc3825174.chain_2314	2	STRG.21328.1,Trinity_GG_29065_c0_g1_i3,Trinity_GG_29065_c0_g1_i6,blat.proc3825174.chain_2313,blat.proc3825174.chain_2315	5
scaffold_6	retained_intron	7185172	7185279	-	asmbl_48481,asmbl_48482	none	STRG.7624.1,blat.proc3825150.chain_3700	2	STRG.7624.2,blat.proc3825150.chain_3701	2
scaffold_15	alt_acceptor	4095517	4095518	+	asmbl_15119	none	STRG.18154.1,blat.proc3825172.chain_2821	2	STRG.18154.2,blat.proc3825172.chain_2822	2
scaffold_17	alternate_exon	11037991	11038384	-	asmbl_18258,asmbl_18259	none	STRG.20664.5,STRG.20664.7,Trinity_GG_11602_c1_g1_i1,blat.proc3825158.chain_1650,blat.proc3825158.chain_1653,blat.proc3825158.chain_1655	6	STRG.20664.4,STRG.20664.6,blat.proc3825158.chain_1651	3
scaffold_8	alt_donor	7453222	7453223	-	asmbl_51908,asmbl_51910	none	STRG.10072.1,Trinity_GG_5591_c0_g1_i1,blat.proc3825152.chain_2288,blat.proc3825152.chain_2289	4	STRG.10072.2,blat.proc3825152.chain_2290	2
scaffold_6	retained_intron	10393410	10393501	+	asmbl_47283	none	blat.proc3825168.chain_330	1	STRG.7883.1,blat.proc3825168.chain_331	2
scaffold_2	starts_in_intron	8329376	8329376	-	asmbl_23326	none	STRG.2117.1,Trinity_GG_1171_c1_g1_i1,blat.proc3825148.chain_2134	3	STRG.2117.2,Trinity_GG_1171_c0_g1_i1,blat.proc3825148.chain_2133	3
scaffold_14	retained_intron	1069783	1069872	+	asmbl_11795	none	blat.proc3825172.chain_1533	1	STRG.16766.3,STRG.16766.4,STRG.16766.5,blat.proc3825172.chain_1536,blat.proc3825172.chain_1539	5
scaffold_20	retained_intron	11438117	11438285	+	asmbl_27044,asmbl_27045	none	STRG.23652.1,STRG.23652.2,blat.proc3825176.chain_818,blat.proc3825176.chain_819	4	STRG.23652.3	1
scaffold_10	skipped_exon	12818068	12819821	+	asmbl_3547	none	blat.proc3825170.chain_1476	1	STRG.12867.1,STRG.12867.2,blat.proc3825170.chain_1475	3
scaffold_5	retained_intron	5063957	5064056	-	asmbl_44028	none	Trinity_GG_3315_c0_g1_i2,blat.proc3825150.chain_2091	2	STRG.5964.2,Trinity_GG_3315_c0_g1_i1,blat.proc3825150.chain_2089	3
scaffold_1	ends_in_intron	9970669	9970669	-	asmbl_572	none	Trinity_GG_365_c0_g1_i2,blat.proc3825148.chain_681	2	STRG.665.1,blat.proc3825148.chain_682	2
scaffold_12	alternate_exon	14256109	14256193	+	asmbl_8075	none	STRG.15262.1,Trinity_GG_25682_c0_g1_i2,blat.proc3825170.chain_3696	3	STRG.15262.3	1
scaffold_24	alt_acceptor	6780715	6780716	-	asmbl_32973,asmbl_32974,asmbl_32975	none	STRG.26733.1,STRG.26733.2,STRG.26733.4	3	STRG.26733.3	1
scaffold_9	alt_acceptor	9656291	9656292	+	asmbl_54221,asmbl_54222	none	blat.proc3825170.chain_160,blat.proc3825170.chain_163	2	STRG.11344.2,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_157	4
scaffold_10	retained_intron	8894400	8894642	-	asmbl_4630	none	blat.proc3825154.chain_1263	1	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	13
scaffold_25	spliced_intron	1903565	1903665	-	asmbl_34055	none	STRG.27201.2	1	STRG.27201.1	1
scaffold_14	starts_in_intron	11576435	11576435	-	asmbl_13496	none	STRG.17499.1,blat.proc3825156.chain_2306	2	STRG.17499.2,STRG.17499.3,STRG.17499.4,blat.proc3825156.chain_2302,blat.proc3825156.chain_2304	5
scaffold_15	starts_in_intron	13067517	13067517	-	asmbl_14611	none	blat.proc3825156.chain_3598	1	STRG.18742.1,blat.proc3825156.chain_3597	2
scaffold_9	retained_exon	16562615	16562641	-	asmbl_55581,asmbl_55582,asmbl_55584,asmbl_55590,asmbl_55591	none	STRG.11806.2,STRG.11806.3,STRG.11806.4,blat.proc3825154.chain_267,blat.proc3825154.chain_272,blat.proc3825154.chain_274	6	STRG.11806.1,STRG.11806.5,blat.proc3825154.chain_270,blat.proc3825154.chain_271	4
scaffold_21	spliced_intron	11570695	11570754	-	asmbl_28132	none	STRG.24630.2	1	STRG.24630.1	1
scaffold_7	skipped_exon	8813443	8814448	+	asmbl_50057	none	STRG.9124.2,blat.proc3825168.chain_1638	2	STRG.9124.1,blat.proc3825168.chain_1639	2
scaffold_15	alt_acceptor	11492018	11492019	-	asmbl_14516	none	STRG.18613.1,blat.proc3825156.chain_3487	2	STRG.18613.2	1
scaffold_8	starts_in_intron	8607073	8607073	-	asmbl_51966	none	blat.proc3825152.chain_2394	1	STRG.10123.1,blat.proc3825152.chain_2393,blat.proc3825152.chain_2395	3
scaffold_14	spliced_intron	1715347	1715448	-	asmbl_12913	none	STRG.16805.1,Trinity_GG_9425_c0_g1_i1,blat.proc3825156.chain_1645	3	blat.proc3825156.chain_1644	1
scaffold_5	alternate_exon	12543407	12543441	-	asmbl_44465	none	STRG.6499.2,blat.proc3825150.chain_2683	2	STRG.6499.1,STRG.6499.3,blat.proc3825150.chain_2684	3
scaffold_21	skipped_exon	8129161	8131427	-	asmbl_27891,asmbl_27892,asmbl_27895	none	STRG.24349.5,blat.proc3825160.chain_1508,blat.proc3825160.chain_1509,blat.proc3825160.chain_1512	4	blat.proc3825160.chain_1511	1
scaffold_5	spliced_intron	18514607	18514706	-	asmbl_44844	none	STRG.6982.2,blat.proc3825150.chain_3063	2	STRG.6982.1,blat.proc3825150.chain_3062	2
scaffold_7	spliced_intron	1034813	1034848	+	asmbl_49574	none	STRG.8621.1	1	Trinity_GG_22050_c0_g1_i1	1
scaffold_9	spliced_intron	9706825	9707265	+	asmbl_54236	none	STRG.11349.2,blat.proc3825170.chain_143	2	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_142	3
scaffold_6	retained_intron	3057498	3057599	+	asmbl_46802	none	blat.proc3825166.chain_3526	1	STRG.7319.1,STRG.7319.2,STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3520,blat.proc3825166.chain_3521,blat.proc3825166.chain_3522,blat.proc3825166.chain_3523,blat.proc3825166.chain_3524	9
scaffold_5	retained_intron	9711452	9711758	+	asmbl_45635	none	blat.proc3825166.chain_2496	1	STRG.6283.1	1
scaffold_12	alt_donor	4721268	4721269	-	asmbl_8435	none	STRG.14649.4	1	STRG.14649.2,STRG.14649.3,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	5
scaffold_7	ends_in_intron	15565194	15565194	-	asmbl_51384,asmbl_51385	none	blat.proc3825152.chain_1851,blat.proc3825152.chain_1852	2	STRG.9555.1	1
scaffold_14	alt_donor	7446970	7446971	+	asmbl_12164	none	STRG.17186.1,blat.proc3825172.chain_1926	2	STRG.17186.2,blat.proc3825172.chain_1925	2
scaffold_24	retained_exon	9082287	9082385	+	asmbl_32491,asmbl_32497,asmbl_32498	none	STRG.26950.2,Trinity_GG_32214_c0_g1_i4,blat.proc3825178.chain_146,blat.proc3825178.chain_150	4	STRG.26950.1,STRG.26950.3,Trinity_GG_32214_c0_g1_i6,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_147,blat.proc3825178.chain_148,blat.proc3825178.chain_151	7
scaffold_3	starts_in_intron	4985893	4985893	+	asmbl_40051	none	Trinity_GG_19125_c1_g1_i1,blat.proc3825164.chain_3471	2	STRG.3200.1,blat.proc3825164.chain_3470	2
scaffold_16	alt_acceptor	11398449	11398450	-	asmbl_17340,asmbl_17342,asmbl_17346	none	STRG.19673.1,STRG.19673.6,STRG.19673.7,blat.proc3825158.chain_729	4	STRG.19673.3,STRG.19673.4	2
scaffold_20	retained_intron	11682548	11683305	-	asmbl_26185	none	STRG.23680.1	1	STRG.23680.2,blat.proc3825160.chain_764	2
scaffold_11	starts_in_intron	7036223	7036223	-	asmbl_6755	none	blat.proc3825154.chain_2293	1	STRG.13727.2,blat.proc3825154.chain_2292	2
scaffold_7	alt_acceptor	18347422	18347423	-	asmbl_51459,asmbl_51460	none	STRG.9663.2,STRG.9663.3	2	STRG.9663.1	1
scaffold_7	alt_acceptor	4933376	4933377	+	asmbl_49777	none	STRG.8852.3	1	STRG.8852.1,STRG.8852.2,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1351,blat.proc3825168.chain_1352	9
scaffold_25	spliced_intron	5828532	5828681	-	asmbl_34287,asmbl_34288,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294	none	STRG.27479.1,STRG.27479.4,Trinity_GG_15422_c0_g1_i7,blat.proc3825162.chain_875,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_879,blat.proc3825162.chain_880	8	blat.proc3825162.chain_881	1
scaffold_8	retained_intron	16503765	16503928	-	asmbl_52402,asmbl_52403,asmbl_52404,asmbl_52409	none	STRG.10629.3,Trinity_GG_5934_c0_g1_i12,Trinity_GG_5934_c0_g1_i21,Trinity_GG_5934_c0_g1_i6,blat.proc3825152.chain_2928,blat.proc3825152.chain_2930,blat.proc3825152.chain_2935,blat.proc3825152.chain_2938	8	STRG.10629.1,STRG.10629.2,blat.proc3825152.chain_2929,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	7
scaffold_27	retained_intron	160376	160481	-	asmbl_36654	none	STRG.28548.2,blat.proc3825162.chain_1777	2	STRG.28548.1,Trinity_GG_15971_c0_g1_i1,blat.proc3825162.chain_1776	3
scaffold_5	ends_in_intron	6046037	6046037	+	asmbl_45394	none	Trinity_GG_20621_c0_g1_i1,blat.proc3825166.chain_2265	2	STRG.6024.1,blat.proc3825166.chain_2266	2
scaffold_16	starts_in_intron	11336959	11336959	+	asmbl_16581	none	STRG.19664.5	1	STRG.19664.1,STRG.19664.3,STRG.19664.4,blat.proc3825152.chain_406,blat.proc3825174.chain_603,blat.proc3825174.chain_604,blat.proc3825174.chain_605,blat.proc3825174.chain_606	8
scaffold_7	retained_intron	271564	271669	+	asmbl_49542	none	STRG.8598.1,blat.proc3825168.chain_1053	2	STRG.8598.3,STRG.8598.4,STRG.8598.6	3
scaffold_5	retained_exon	236514	237501	-	asmbl_43763	none	STRG.5593.1	1	STRG.5593.3,blat.proc3825150.chain_1832	2
scaffold_14	retained_intron	3243702	3243805	+	asmbl_11931,asmbl_11932	none	Trinity_GG_26577_c0_g1_i1,Trinity_GG_26577_c0_g1_i4,blat.proc3825172.chain_1619,blat.proc3825172.chain_1620	4	STRG.16923.1,STRG.16923.2,blat.proc3825172.chain_1617,blat.proc3825172.chain_1621,blat.proc3825172.chain_1622	5
scaffold_14	retained_exon	2247331	2247578	-	asmbl_12924,asmbl_12925	none	STRG.16830.1,Trinity_GG_9429_c0_g1_i1,Trinity_GG_9429_c0_g1_i2,blat.proc3825156.chain_1650,blat.proc3825156.chain_1651	5	STRG.16830.2,Trinity_GG_9429_c0_g1_i3,blat.proc3825156.chain_1652	3
scaffold_1	spliced_intron	4010865	4010976	-	asmbl_175	none	STRG.247.2	1	STRG.247.1,blat.proc3825148.chain_143	2
scaffold_25	starts_in_intron	6835658	6835658	-	asmbl_34371	none	blat.proc3825162.chain_932	1	STRG.27546.1,blat.proc3825162.chain_931	2
scaffold_4	spliced_intron	15689788	15689823	-	asmbl_43117	none	STRG.5156.1	1	STRG.5156.2	1
scaffold_13	starts_in_intron	8355420	8355420	+	asmbl_11130	none	blat.proc3825172.chain_919	1	STRG.16130.1,STRG.16130.2,STRG.16130.3,blat.proc3825172.chain_915,blat.proc3825172.chain_917	5
scaffold_6	alt_donor	4129233	4129234	-	asmbl_48286	none	STRG.7388.2,blat.proc3825150.chain_3509	2	STRG.7388.1,STRG.7388.3	2
scaffold_28	ends_in_intron	8678111	8678111	-	asmbl_38477	none	blat.proc3825162.chain_3075	1	STRG.29939.1,blat.proc3825162.chain_3076	2
scaffold_6	retained_intron	5752485	5752688	+	asmbl_46975	none	blat.proc3825166.chain_3735	1	STRG.7534.1,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	4
scaffold_7	retained_exon	4928951	4929060	+	asmbl_49775,asmbl_49778	none	blat.proc3825168.chain_1344,blat.proc3825168.chain_1348	2	STRG.8852.1,STRG.8852.2,STRG.8852.3,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1352	7
scaffold_18	alt_acceptor	8155754	8155755	-	asmbl_19997	none	STRG.21504.1,blat.proc3825158.chain_2425	2	STRG.21504.2,blat.proc3825158.chain_2427	2
scaffold_4	ends_in_intron	1634687	1634687	+	asmbl_41121	none	STRG.4197.2,blat.proc3825166.chain_652	2	STRG.4197.1,blat.proc3825166.chain_650	2
scaffold_27	alt_donor	1090759	1090760	+	asmbl_35987,asmbl_35989	none	STRG.28606.1,STRG.28606.3,blat.proc3825178.chain_1734	3	STRG.28606.2,blat.proc3825178.chain_1735	2
scaffold_13	retained_intron	7217965	7218245	+	asmbl_11025,asmbl_11027	none	blat.proc3825172.chain_814,blat.proc3825172.chain_816	2	blat.proc3825172.chain_809	1
scaffold_28	alternate_exon	3542908	3542935	-	asmbl_38158	none	STRG.29570.3	1	STRG.29570.1,STRG.29570.2,blat.proc3825162.chain_2720,blat.proc3825162.chain_2721	4
scaffold_24	alt_acceptor	6167640	6167641	-	asmbl_32936	none	STRG.26677.3,blat.proc3825160.chain_3724	2	STRG.26677.2,blat.proc3825160.chain_3726	2
scaffold_11	retained_exon	17293756	17293837	-	asmbl_7263	none	STRG.14391.2,blat.proc3825154.chain_2908	2	STRG.14391.1,blat.proc3825154.chain_2909	2
scaffold_14	retained_intron	7463163	7463252	-	asmbl_13206	none	STRG.17189.1	1	STRG.17189.3	1
scaffold_8	alt_acceptor	18424570	18424571	+	asmbl_53548,asmbl_53549	none	STRG.10739.1,Trinity_GG_23252_c0_g1_i3,blat.proc3825168.chain_3240	3	STRG.10739.2,Trinity_GG_23252_c0_g1_i2,blat.proc3825168.chain_3239	3
scaffold_10	ends_in_intron	378846	378846	-	asmbl_3950	none	Trinity_GG_6631_c0_g1_i5,blat.proc3825154.chain_460	2	STRG.11922.4,blat.proc3825154.chain_462	2
scaffold_21	retained_intron	2162273	2162399	-	asmbl_27436	none	blat.proc3825160.chain_908	1	STRG.23841.1,blat.proc3825160.chain_907	2
scaffold_3	ends_in_intron	10609766	10609766	-	asmbl_39099	none	STRG.3501.4,Trinity_GG_1859_c3_g1_i1,blat.proc3825148.chain_3333	3	STRG.3501.2,STRG.3501.3,blat.proc3825148.chain_3328,blat.proc3825148.chain_3329,blat.proc3825148.chain_3330	5
scaffold_6	alternate_exon	5084908	5085053	-	asmbl_48399	none	STRG.7485.2	1	STRG.7485.1,blat.proc3825150.chain_3671,blat.proc3825150.chain_3672	3
scaffold_15	alt_donor	9856865	9856866	-	asmbl_14416	none	STRG.18501.4	1	STRG.18501.1,STRG.18501.2,STRG.18501.3	3
scaffold_13	retained_exon	400050	400121	-	asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9352,asmbl_9354	none	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24	Trinity_GG_8688_c0_g2_i3,blat.proc3825156.chain_371	2
scaffold_5	alternate_exon	18759573	18759850	+	asmbl_46282	none	STRG.7009.2	1	STRG.7009.1,Trinity_GG_21159_c0_g1_i1,blat.proc3825166.chain_3213	3
scaffold_5	alt_acceptor	18758460	18758461	-	asmbl_44876	none	STRG.7008.2	1	STRG.7008.1,blat.proc3825150.chain_3109	2
scaffold_4	alt_donor	16706304	16706305	-	asmbl_43205	none	STRG.5251.2,blat.proc3825150.chain_1356	2	STRG.5251.1,STRG.5251.3,blat.proc3825150.chain_1355,blat.proc3825150.chain_1357	4
scaffold_5	starts_in_intron	15766134	15766134	+	asmbl_46023	none	blat.proc3825166.chain_2920	1	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	8
scaffold_5	spliced_intron	5045141	5045424	+	asmbl_45327	none	STRG.5958.2,blat.proc3825166.chain_2127	2	STRG.5958.4,blat.proc3825166.chain_2128	2
scaffold_10	alt_acceptor	8903982	8903983	-	asmbl_4637	none	STRG.12634.3,blat.proc3825154.chain_1247,blat.proc3825178.chain_3390	3	STRG.12634.2,blat.proc3825154.chain_1248	2
scaffold_5	retained_intron	13316252	13316346	-	asmbl_44540	none	blat.proc3825150.chain_2764	1	STRG.6579.1,blat.proc3825150.chain_2763,blat.proc3825150.chain_2766	3
scaffold_9	alt_acceptor	13300121	13300122	-	asmbl_55420,asmbl_55421,asmbl_55424	none	STRG.11628.1,STRG.11628.4,STRG.11628.5	3	STRG.11628.2,STRG.11628.3	2
scaffold_7	ends_in_intron	10267970	10267970	-	asmbl_51113	none	STRG.9203.3,blat.proc3825152.chain_1581	2	STRG.9203.1,blat.proc3825152.chain_1582	2
scaffold_19	ends_in_intron	12114941	12114941	+	asmbl_21745	none	Trinity_GG_29786_c0_g1_i1,blat.proc3825174.chain_3573	2	STRG.22537.1,Trinity_GG_29786_c0_g1_i2,blat.proc3825174.chain_3572	3
scaffold_12	alt_acceptor	12452016	12452017	+	asmbl_8006,asmbl_8007	none	STRG.15151.1,STRG.15151.3	2	STRG.15151.2	1
scaffold_15	alternate_exon	1961511	1961770	+	asmbl_15042	none	STRG.17992.3	1	STRG.17992.1	1
scaffold_4	alt_donor	16317702	16317703	+	asmbl_41965	none	STRG.5200.4	1	STRG.5200.1,STRG.5200.2,STRG.5200.3,blat.proc3825166.chain_1499,blat.proc3825166.chain_1501	5
scaffold_5	retained_intron	16583212	16583590	-	asmbl_44757,asmbl_44758,asmbl_44759,asmbl_44761	none	STRG.6850.2,blat.proc3825150.chain_3026,blat.proc3825150.chain_3027,blat.proc3825150.chain_3028	4	STRG.6850.1	1
scaffold_16	alternate_exon	6118560	6118853	+	asmbl_16271	none	STRG.19343.2	1	blat.proc3825174.chain_240	1
scaffold_7	skipped_exon	1438761	1440604	-	asmbl_50728	none	STRG.8647.2	1	STRG.8647.1	1
scaffold_15	starts_in_intron	2822305	2822305	-	asmbl_14055	none	Trinity_GG_10175_c1_g1_i1	1	STRG.18075.1,STRG.18075.2	2
scaffold_16	spliced_intron	125457	125550	+	asmbl_15996	none	STRG.19007.1,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3683	3	Trinity_GG_27742_c0_g1_i1,Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3682,blat.proc3825172.chain_3684	4
scaffold_1	starts_in_intron	1217866	1217866	-	asmbl_52	none	blat.proc3825148.chain_70	1	STRG.65.1,STRG.65.3,Trinity_GG_36_c0_g2_i1,blat.proc3825148.chain_71	4
scaffold_23	spliced_intron	811002	811092	-	asmbl_30608	none	Trinity_GG_14309_c0_g1_i7,blat.proc3825160.chain_2756	2	Trinity_GG_14309_c0_g1_i5,blat.proc3825160.chain_2755	2
scaffold_27	starts_in_intron	607295	607295	+	asmbl_35955	none	Trinity_GG_33127_c0_g1_i1,blat.proc3825178.chain_1703	2	blat.proc3825178.chain_1704	1
scaffold_25	alt_donor	3084649	3084650	-	asmbl_34093	none	STRG.27251.3	1	STRG.27251.1,STRG.27251.2,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555	5
scaffold_5	starts_in_intron	9705486	9705486	-	asmbl_44297	none	blat.proc3825150.chain_2496	1	STRG.6293.2,STRG.6293.3,STRG.6293.4,blat.proc3825150.chain_2498,blat.proc3825150.chain_2499,blat.proc3825150.chain_2502,blat.proc3825150.chain_2503,blat.proc3825150.chain_2505	8
scaffold_16	ends_in_intron	701616	701616	+	asmbl_16043	none	blat.proc3825172.chain_3709	1	STRG.19048.1,blat.proc3825172.chain_3707,blat.proc3825172.chain_3708	3
scaffold_1	starts_in_intron	7793494	7793494	+	asmbl_1920	none	STRG.538.2,blat.proc3825164.chain_690	2	STRG.538.1,blat.proc3825164.chain_688,blat.proc3825164.chain_689	3
scaffold_10	retained_intron	12053237	12053342	+	asmbl_3522,asmbl_3524	none	STRG.12840.2,Trinity_GG_24387_c0_g1_i2,blat.proc3825170.chain_1441	3	STRG.12840.1,Trinity_GG_24387_c0_g1_i1	2
scaffold_6	ends_in_intron	4963689	4963689	-	asmbl_48376	none	blat.proc3825150.chain_3660	1	blat.proc3825150.chain_3661,blat.proc3825150.chain_3662,blat.proc3825150.chain_3663	3
scaffold_8	ends_in_intron	16504567	16504567	-	asmbl_52408	none	Trinity_GG_5934_c1_g1_i1,blat.proc3825152.chain_2942	2	STRG.10629.1,STRG.10629.4,STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i12,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2935,blat.proc3825152.chain_2936,blat.proc3825152.chain_2937,blat.proc3825152.chain_2939,blat.proc3825152.chain_2941	15
scaffold_12	spliced_intron	15773119	15773403	-	asmbl_9100	none	STRG.15372.1,blat.proc3825156.chain_175	2	STRG.15372.2,blat.proc3825156.chain_174	2
scaffold_5	starts_in_intron	6566767	6566767	+	asmbl_45432	none	STRG.6054.3	1	STRG.6054.1,STRG.6054.2,blat.proc3825166.chain_2217	3
scaffold_37	alt_acceptor	3846	3847	+	asmbl_41053	none	STRG.30030.2,blat.proc3825178.chain_3164	2	STRG.30030.1,blat.proc3825178.chain_3165	2
scaffold_28	starts_in_intron	4203861	4203861	+	asmbl_37524	none	Trinity_GG_33739_c0_g1_i3,blat.proc3825178.chain_2814	2	STRG.29616.2	1
scaffold_13	alt_donor	7198085	7198086	-	asmbl_9863	none	STRG.16016.1,blat.proc3825156.chain_961	2	STRG.16016.3,blat.proc3825156.chain_960	2
scaffold_7	starts_in_intron	11767829	11767829	+	asmbl_50188	none	blat.proc3825168.chain_1751	1	STRG.9289.1,STRG.9289.2,blat.proc3825168.chain_1750,blat.proc3825168.chain_1752	4
scaffold_27	retained_exon	932682	932837	-	asmbl_36718,asmbl_36719,asmbl_36720,asmbl_36722	none	STRG.28588.1,STRG.28588.2,STRG.28588.3,blat.proc3825162.chain_1833,blat.proc3825162.chain_1834,blat.proc3825162.chain_1835,blat.proc3825162.chain_1836	7	STRG.28588.4	1
scaffold_17	alt_acceptor	4745016	4745017	+	asmbl_18794	none	STRG.20209.2	1	STRG.20209.1,Trinity_GG_28353_c0_g1_i1,blat.proc3825174.chain_1026	3
scaffold_5	alt_donor	8082096	8082097	+	asmbl_45526	none	STRG.6169.2	1	STRG.6169.1	1
scaffold_10	alternate_exon	13472425	13472520	-	asmbl_4886	none	STRG.12943.2,blat.proc3825154.chain_1532	2	STRG.12943.3	1
scaffold_32	alt_donor	37547	37548	+	asmbl_40951	none	blat.proc3825168.chain_1062	1	STRG.30020.2	1
scaffold_22	starts_in_intron	4210631	4210631	+	asmbl_29973	none	Trinity_GG_31039_c0_g1_i2,blat.proc3825176.chain_1936	2	blat.proc3825176.chain_1937	1
scaffold_5	retained_intron	10969290	10969590	+	asmbl_45714	none	Trinity_GG_20790_c2_g1_i1,blat.proc3825166.chain_2595	2	STRG.6375.1,STRG.6375.2,blat.proc3825166.chain_2592,blat.proc3825166.chain_2593,blat.proc3825166.chain_2594	5
scaffold_14	alternate_exon	12634340	12634625	-	asmbl_13582	none	blat.proc3825156.chain_2419	1	STRG.17582.1,STRG.17582.3,STRG.17582.5,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2420,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	8
scaffold_15	retained_intron	4817650	4817737	-	asmbl_14166	none	blat.proc3825156.chain_2948	1	STRG.18206.1,blat.proc3825156.chain_2945	2
scaffold_16	retained_intron	14615041	14615251	-	asmbl_17474	none	STRG.19858.4,blat.proc3825158.chain_911	2	STRG.19858.3,blat.proc3825158.chain_914	2
scaffold_1	spliced_intron	11657286	11657388	+	asmbl_2119,asmbl_2120	none	STRG.776.1,Trinity_GG_17783_c0_g1_i3,blat.proc3825164.chain_898,blat.proc3825164.chain_899	4	blat.proc3825164.chain_900	1
scaffold_18	alt_acceptor	8913428	8913429	-	asmbl_20046,asmbl_20047	none	STRG.21558.6,STRG.21558.7,blat.proc3825158.chain_2449	3	STRG.21558.1	1
scaffold_17	spliced_intron	1523950	1524129	+	asmbl_18613	none	blat.proc3825174.chain_868	1	STRG.19993.1,blat.proc3825174.chain_869	2
scaffold_1	spliced_intron	12335190	12335281	-	asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_711,asmbl_712,asmbl_713,asmbl_714,asmbl_715,asmbl_716	none	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_831,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	13	Trinity_GG_444_c0_g1_i30,blat.proc3825148.chain_826,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_834,blat.proc3825148.chain_836	6
scaffold_9	retained_exon	9871369	9871452	-	asmbl_55243	none	Trinity_GG_6280_c0_g1_i1,blat.proc3825152.chain_3583	2	STRG.11356.1,Trinity_GG_6280_c0_g1_i6,blat.proc3825152.chain_3582	3
scaffold_26	starts_in_intron	7487618	7487618	+	asmbl_35119,asmbl_35120	none	Trinity_GG_33001_c0_g1_i3,blat.proc3825178.chain_1470,blat.proc3825178.chain_1471	3	STRG.28384.1,STRG.28384.2,STRG.28384.3,blat.proc3825178.chain_1469	4
scaffold_21	alt_acceptor	2594137	2594138	+	asmbl_28404	none	STRG.23891.1,blat.proc3825176.chain_1099	2	STRG.23891.2	1
scaffold_28	alternate_exon	5391043	5391172	+	asmbl_37589	none	blat.proc3825178.chain_2870	1	STRG.29687.3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866	3
scaffold_2	alternate_exon	18307275	18307364	-	asmbl_23776	none	STRG.2714.3	1	STRG.2714.1,blat.proc3825148.chain_2640	2
scaffold_10	retained_intron	7684958	7685179	+	asmbl_3296	none	STRG.12557.4,blat.proc3825170.chain_1164,blat.proc3825170.chain_1168	3	blat.proc3825170.chain_1171	1
scaffold_8	alt_acceptor	8877856	8877857	+	asmbl_53038	none	STRG.10139.2,blat.proc3825168.chain_2706	2	STRG.10139.1,blat.proc3825168.chain_2705	2
scaffold_18	starts_in_intron	7685689	7685689	+	asmbl_20775,asmbl_20778	none	STRG.21474.5,Trinity_GG_29179_c0_g1_i11,blat.proc3825174.chain_2510	3	STRG.21474.1,STRG.21474.2,STRG.21474.3,STRG.21474.4,Trinity_GG_29179_c0_g1_i14,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	12
scaffold_5	alternate_exon	990447	990573	+	asmbl_45108	none	blat.proc3825166.chain_1830	1	STRG.5651.2,blat.proc3825166.chain_1831	2
scaffold_1	retained_exon	6752807	6752940	+	asmbl_1850	none	STRG.465.1,blat.proc3825164.chain_606	2	STRG.465.3,blat.proc3825164.chain_604	2
scaffold_15	starts_in_intron	1593942	1593942	+	asmbl_15022	none	STRG.17966.2	1	STRG.17966.1	1
scaffold_8	spliced_intron	7482867	7483073	-	asmbl_51911,asmbl_51915	none	STRG.10078.1,blat.proc3825152.chain_2256,blat.proc3825152.chain_2259	3	blat.proc3825152.chain_2257	1
scaffold_14	retained_intron	7444437	7444909	-	asmbl_13201	none	STRG.17184.2,Trinity_GG_9625_c0_g1_i2,blat.proc3825156.chain_1980	3	STRG.17184.1,Trinity_GG_9625_c0_g1_i3,blat.proc3825156.chain_1979	3
scaffold_4	ends_in_intron	17019740	17019740	-	asmbl_43245	none	Trinity_GG_2960_c0_g1_i1	1	STRG.5297.1,blat.proc3825150.chain_1469	2
scaffold_7	ends_in_intron	9686404	9686404	-	asmbl_51053	none	Trinity_GG_5170_c1_g1_i2,blat.proc3825152.chain_1545	2	blat.proc3825152.chain_1544	1
scaffold_10	ends_in_intron	9053649	9053649	-	asmbl_4660	none	Trinity_GG_7062_c0_g1_i1,blat.proc3825154.chain_1240	2	STRG.12654.1,STRG.12654.2,blat.proc3825154.chain_1239,blat.proc3825154.chain_1241,blat.proc3825154.chain_1242,blat.proc3825154.chain_1243	6
scaffold_12	alt_donor	7600412	7600413	+	asmbl_7769	none	STRG.14837.1,blat.proc3825170.chain_3350	2	STRG.14837.2	1
scaffold_9	alt_acceptor	11837709	11837710	-	asmbl_55321,asmbl_55323,asmbl_55324	none	STRG.11501.1,STRG.11501.2,blat.proc3825152.chain_3669,blat.proc3825152.chain_3671,blat.proc3825152.chain_3672	5	STRG.11501.3,blat.proc3825152.chain_3670	2
scaffold_11	alternate_exon	3852758	3855022	+	asmbl_5462	none	STRG.13502.1,Trinity_GG_24731_c0_g1_i3,blat.proc3825170.chain_2038	3	STRG.13502.2,Trinity_GG_24731_c0_g1_i2,blat.proc3825170.chain_2039	3
scaffold_24	retained_intron	9116511	9116764	+	asmbl_32513,asmbl_32514	none	blat.proc3825178.chain_179,blat.proc3825178.chain_180	2	STRG.26942.1,blat.proc3825178.chain_172,blat.proc3825178.chain_175,blat.proc3825178.chain_177,blat.proc3825178.chain_178	5
scaffold_18	spliced_intron	5730383	5730838	+	asmbl_20598	none	STRG.21323.2,Trinity_GG_29058_c0_g2_i1,blat.proc3825174.chain_2280	3	STRG.21323.1,Trinity_GG_29058_c0_g2_i2,blat.proc3825174.chain_2281	3
scaffold_27	spliced_intron	2049473	2049594	+	asmbl_36062,asmbl_36063	none	STRG.28688.1,blat.proc3825178.chain_1809,blat.proc3825178.chain_1811	3	blat.proc3825178.chain_1810	1
scaffold_24	alt_acceptor	9119907	9119908	+	asmbl_32509,asmbl_32510,asmbl_32511,asmbl_32512,asmbl_32513,asmbl_32514,asmbl_32515	none	STRG.26942.1,blat.proc3825178.chain_173,blat.proc3825178.chain_175,blat.proc3825178.chain_176,blat.proc3825178.chain_177,blat.proc3825178.chain_178,blat.proc3825178.chain_179,blat.proc3825178.chain_180	8	Trinity_GG_32221_c0_g1_i2,Trinity_GG_32221_c0_g1_i9,blat.proc3825178.chain_171,blat.proc3825178.chain_172,blat.proc3825178.chain_174	5
scaffold_25	skipped_exon	7342027	7343333	+	asmbl_33673	none	STRG.27589.3	1	STRG.27589.1,STRG.27589.2,Trinity_GG_32527_c1_g1_i1,blat.proc3825178.chain_699	4
scaffold_23	retained_intron	10909931	10909952	-	asmbl_31169,asmbl_31170	none	STRG.26293.2,STRG.26293.3,Trinity_GG_14677_c0_g1_i1,Trinity_GG_14677_c0_g1_i2,blat.proc3825160.chain_3388	5	STRG.26293.1	1
scaffold_18	retained_intron	8912338	8912443	-	asmbl_20042	none	STRG.21558.9,Trinity_GG_12043_c0_g1_i4,blat.proc3825158.chain_2448	3	STRG.21558.1,STRG.21558.3,STRG.21558.4,STRG.21558.6,STRG.21558.7,STRG.21558.8,blat.proc3825158.chain_2447,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451,blat.proc3825158.chain_2453	10
scaffold_6	ends_in_intron	18087215	18087215	+	asmbl_47817	none	STRG.8502.3	1	blat.proc3825168.chain_1021	1
scaffold_7	alt_donor	5211432	5211433	+	asmbl_49792	none	STRG.8859.2,Trinity_GG_22157_c0_g1_i2,blat.proc3825168.chain_1283	3	STRG.8859.1,Trinity_GG_22157_c0_g1_i1,blat.proc3825168.chain_1282	3
scaffold_9	retained_intron	11842903	11843151	-	asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55332	none	blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	4	STRG.11513.2	1
scaffold_5	alt_donor	10163587	10163588	+	asmbl_45662	none	STRG.6319.2	1	STRG.6319.1,blat.proc3825166.chain_2508	2
scaffold_16	spliced_intron	7540673	7540805	-	asmbl_17181	none	STRG.19413.1,blat.proc3825158.chain_539	2	blat.proc3825158.chain_538	1
scaffold_4	retained_intron	11075139	11075491	+	asmbl_41700	none	STRG.4828.3,Trinity_GG_20019_c1_g1_i1,blat.proc3825166.chain_1288	3	STRG.4828.2,Trinity_GG_20019_c0_g1_i2,blat.proc3825166.chain_1287	3
scaffold_3	retained_intron	935722	935829	-	asmbl_38683	none	blat.proc3825148.chain_2836	1	blat.proc3825148.chain_2837,blat.proc3825148.chain_2838	2
scaffold_27	starts_in_intron	3873245	3873245	+	asmbl_36231	none	blat.proc3825178.chain_2053	1	blat.proc3825178.chain_2052,blat.proc3825178.chain_2054	2
scaffold_6	starts_in_intron	854561	854561	-	asmbl_48078	none	Trinity_GG_3998_c0_g2_i1	1	STRG.7151.1,STRG.7151.3,blat.proc3825150.chain_3267,blat.proc3825150.chain_3268	4
scaffold_14	alt_donor	10692538	10692539	+	asmbl_12340	none	STRG.17422.1,blat.proc3825172.chain_2154	2	STRG.17422.4,blat.proc3825172.chain_2156	2
scaffold_14	retained_intron	5791100	5791212	-	asmbl_13094	none	blat.proc3825156.chain_1795	1	STRG.17052.1,blat.proc3825156.chain_1796	2
scaffold_13	skipped_exon	5334067	5336246	+	asmbl_10839,asmbl_10841	none	STRG.15832.2,blat.proc3825172.chain_578	2	STRG.15832.1,blat.proc3825172.chain_579,blat.proc3825172.chain_580	3
scaffold_17	retained_intron	14633346	14633405	+	asmbl_19418	none	STRG.20943.2	1	STRG.20943.3	1
scaffold_18	alt_acceptor	9258671	9258672	-	asmbl_20060	none	STRG.21569.4,Trinity_GG_12060_c0_g1_i3,blat.proc3825158.chain_2486	3	STRG.21569.2,blat.proc3825158.chain_2485	2
scaffold_18	ends_in_intron	2831782	2831782	+	asmbl_20427	none	STRG.21142.3,blat.proc3825174.chain_2058	2	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2052,blat.proc3825174.chain_2056	5
scaffold_15	alt_acceptor	2491472	2491473	+	asmbl_15058	none	STRG.18031.2	1	STRG.18031.1,blat.proc3825172.chain_2721	2
scaffold_10	alt_acceptor	14691921	14691922	+	asmbl_3651	none	STRG.13014.3	1	STRG.13014.1,STRG.13014.2,blat.proc3825170.chain_1571	3
scaffold_21	spliced_intron	10498503	10498605	-	asmbl_28047,asmbl_28048,asmbl_28051	none	STRG.24519.1,STRG.24519.2,blat.proc3825160.chain_1740,blat.proc3825160.chain_1741,blat.proc3825160.chain_1744,blat.proc3825160.chain_1745	6	blat.proc3825160.chain_1743	1
scaffold_20	alt_donor	11380303	11380304	+	asmbl_27035,asmbl_27037	none	STRG.23648.2,STRG.23648.3,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_759	4	STRG.23648.1,STRG.23648.4,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i1,blat.proc3825176.chain_757	6
scaffold_27	alt_donor	975998	975999	+	asmbl_35967,asmbl_35970,asmbl_35971,asmbl_35973,asmbl_35975	none	STRG.28595.4,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i12,Trinity_GG_33133_c0_g1_i4,Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1712,blat.proc3825178.chain_1717,blat.proc3825178.chain_1719,blat.proc3825178.chain_1720	9	STRG.28595.1	1
scaffold_23	spliced_intron	7281701	7281793	-	asmbl_31026	none	STRG.26052.3	1	STRG.26052.1,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	3
scaffold_21	starts_in_intron	3827247	3827247	-	asmbl_27550,asmbl_27551	none	blat.proc3825160.chain_1115,blat.proc3825160.chain_1119	2	STRG.23974.1,STRG.23974.2,STRG.23974.3,STRG.23974.4,blat.proc3825160.chain_1116,blat.proc3825160.chain_1117,blat.proc3825160.chain_1118	7
scaffold_17	alt_donor	536133	536134	+	asmbl_18543,asmbl_18545,asmbl_18547,asmbl_18549	none	STRG.19902.1,STRG.19902.2,blat.proc3825174.chain_784,blat.proc3825174.chain_787,blat.proc3825174.chain_788	5	STRG.19902.3,blat.proc3825174.chain_786,blat.proc3825174.chain_789	3
scaffold_14	alt_donor	208102	208103	-	asmbl_12795,asmbl_12796,asmbl_12803	none	STRG.16713.1,STRG.16713.2,blat.proc3825156.chain_1541,blat.proc3825156.chain_1542	4	STRG.16713.4,blat.proc3825156.chain_1540	2
scaffold_10	spliced_intron	11911250	11911410	-	asmbl_4799,asmbl_4800	none	STRG.12827.1,blat.proc3825154.chain_1375,blat.proc3825154.chain_1376	3	STRG.12827.2,Trinity_GG_7139_c0_g1_i3,Trinity_GG_7139_c0_g1_i5,blat.proc3825154.chain_1377,blat.proc3825154.chain_1378	5
scaffold_13	alt_donor	7443068	7443069	+	asmbl_11050	none	blat.proc3825172.chain_751	1	STRG.16040.1,STRG.16040.2,blat.proc3825172.chain_752	3
scaffold_2	starts_in_intron	12655706	12655706	-	asmbl_23476	none	STRG.2316.1	1	STRG.2316.2,blat.proc3825148.chain_2303	2
scaffold_6	alt_acceptor	8054838	8054839	+	asmbl_47093,asmbl_47095	none	STRG.7685.1,blat.proc3825168.chain_115	2	STRG.7685.2	1
scaffold_15	alt_acceptor	11941297	11941298	-	asmbl_14539	none	STRG.18636.1,blat.proc3825156.chain_3459	2	STRG.18636.2,blat.proc3825156.chain_3460	2
scaffold_19	spliced_intron	13192750	13192898	-	asmbl_22610,asmbl_22617,asmbl_22619,asmbl_22620,asmbl_22621,asmbl_22623	none	STRG.22653.1,Trinity_GG_12588_c1_g1_i6,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3431,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3436	8	Trinity_GG_12588_c1_g1_i9,blat.proc3825158.chain_3437	2
scaffold_7	spliced_intron	2509920	2510016	-	asmbl_50758	none	Trinity_GG_4956_c0_g1_i3,blat.proc3825152.chain_1162	2	Trinity_GG_4956_c0_g1_i1,blat.proc3825152.chain_1163	2
scaffold_17	alt_acceptor	5137391	5137392	-	asmbl_17920	none	STRG.20247.3,blat.proc3825158.chain_1309	2	STRG.20247.1,STRG.20247.2,blat.proc3825158.chain_1307,blat.proc3825158.chain_1310	4
scaffold_23	retained_intron	10977476	10977635	+	asmbl_31899,asmbl_31901,asmbl_31902,asmbl_31903,asmbl_31904	none	STRG.26307.2,STRG.26307.4,Trinity_GG_31796_c0_g1_i6,blat.proc3825176.chain_3178,blat.proc3825176.chain_3179,blat.proc3825176.chain_3181	6	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_10	alt_acceptor	5686380	5686381	+	asmbl_3193	none	STRG.12396.3	1	STRG.12396.1,STRG.12396.2,blat.proc3825170.chain_1001	3
scaffold_24	spliced_intron	879811	879831	+	asmbl_32054	none	STRG.26371.3	1	STRG.26371.1,blat.proc3825176.chain_3378	2
scaffold_6	alt_acceptor	18621667	18621668	+	asmbl_47830	none	STRG.8528.1,Trinity_GG_22002_c0_g1_i1,blat.proc3825168.chain_993	3	STRG.8528.2,Trinity_GG_22002_c0_g1_i2,blat.proc3825168.chain_992	3
scaffold_8	retained_intron	12194719	12195488	-	asmbl_52185	none	Trinity_GG_5777_c1_g1_i1,blat.proc3825152.chain_2625,blat.proc3825152.chain_2627	3	STRG.10405.1,blat.proc3825152.chain_2626	2
scaffold_6	alt_acceptor	16607687	16607688	+	asmbl_47709	none	STRG.8386.1	1	STRG.8386.2	1
scaffold_13	alt_acceptor	9337883	9337884	-	asmbl_10025	none	STRG.16201.3	1	STRG.16201.1,STRG.16201.2,blat.proc3825156.chain_1010,blat.proc3825156.chain_1011	4
scaffold_3	alternate_exon	2969245	2969308	-	asmbl_38748	none	STRG.3052.1,blat.proc3825148.chain_2918	2	STRG.3052.2	1
scaffold_11	retained_intron	12071585	12071767	-	asmbl_7074	none	Trinity_GG_7851_c1_g1_i3,blat.proc3825154.chain_2576	2	STRG.14130.2,Trinity_GG_7851_c1_g1_i2	2
scaffold_25	spliced_intron	6253628	6253853	+	asmbl_33606	none	STRG.27510.1,blat.proc3825178.chain_626	2	Trinity_GG_32481_c0_g1_i2,Trinity_GG_32481_c0_g1_i5,blat.proc3825178.chain_623,blat.proc3825178.chain_624,blat.proc3825178.chain_625,blat.proc3825178.chain_627	6
scaffold_22	ends_in_intron	4579503	4579503	+	asmbl_30026	none	blat.proc3825176.chain_2002	1	STRG.24887.1,STRG.24887.2,STRG.24887.3,STRG.24887.4,blat.proc3825176.chain_2001,blat.proc3825176.chain_2003,blat.proc3825176.chain_2004	7
scaffold_21	alt_acceptor	7601121	7601122	+	asmbl_28753	none	STRG.24297.2,blat.proc3825176.chain_1516	2	STRG.24297.1,blat.proc3825176.chain_1515	2
scaffold_8	alternate_exon	15204776	15210657	+	asmbl_53391	none	STRG.10555.2	1	STRG.10555.3	1
scaffold_11	starts_in_intron	3190543	3190543	-	asmbl_6540	none	blat.proc3825154.chain_1995	1	STRG.13450.1,blat.proc3825154.chain_1992	2
scaffold_5	alt_donor	8135152	8135153	+	asmbl_45533	none	STRG.6190.1,blat.proc3825166.chain_2396	2	STRG.6190.2,blat.proc3825166.chain_2398	2
scaffold_14	starts_in_intron	15244190	15244190	+	asmbl_12578	none	Trinity_GG_27064_c0_g1_i1,blat.proc3825172.chain_2465	2	STRG.17751.1,blat.proc3825172.chain_2463	2
scaffold_16	alternate_exon	12648001	12648316	+	asmbl_16641	none	STRG.19759.1,blat.proc3825174.chain_663	2	STRG.19759.2,blat.proc3825174.chain_662	2
scaffold_10	alternate_exon	4050276	4050689	+	asmbl_3103	none	Trinity_GG_24107_c0_g1_i1,blat.proc3825170.chain_953	2	STRG.12245.2	1
scaffold_13	alternate_exon	1530216	1530380	-	asmbl_9414,asmbl_9415,asmbl_9418	none	STRG.15516.2,STRG.15516.3,STRG.15516.4,Trinity_GG_8698_c0_g1_i5,blat.proc3825156.chain_405	5	Trinity_GG_8698_c0_g1_i2,blat.proc3825156.chain_403	2
scaffold_5	skipped_exon	17976293	17978662	+	asmbl_46199	none	blat.proc3825166.chain_3049	1	STRG.6942.1,blat.proc3825166.chain_3048	2
scaffold_21	retained_intron	7502207	7502569	-	asmbl_27829,asmbl_27832	none	STRG.24282.1,STRG.24282.4,blat.proc3825160.chain_1441	3	STRG.24282.2,STRG.24282.3,blat.proc3825160.chain_1442	3
scaffold_5	ends_in_intron	15486936	15486936	+	asmbl_45996,asmbl_45997	none	STRG.6736.1,STRG.6736.3	2	STRG.6736.2	1
scaffold_7	alt_acceptor	133223	133224	-	asmbl_50664,asmbl_50666	none	STRG.8595.2,STRG.8595.5	2	STRG.8595.7	1
scaffold_12	alt_donor	14104508	14104509	-	asmbl_8981,asmbl_8982	none	Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_88,blat.proc3825156.chain_97	3	Trinity_GG_8557_c0_g1_i6,blat.proc3825156.chain_95,blat.proc3825156.chain_96	3
scaffold_10	alternate_exon	16252754	16258017	+	asmbl_3708	none	STRG.13106.2,blat.proc3825170.chain_1658	2	STRG.13106.4	1
scaffold_10	alternate_exon	7801046	7804599	-	asmbl_4555	none	STRG.12566.1,blat.proc3825154.chain_1154	2	STRG.12566.2,STRG.12566.3,blat.proc3825154.chain_1155	3
scaffold_15	alt_acceptor	3695257	3695258	-	asmbl_14114	none	STRG.18149.2	1	STRG.18149.3	1
scaffold_20	starts_in_intron	3713065	3713065	+	asmbl_26538	none	Trinity_GG_29989_c0_g1_i3,blat.proc3825176.chain_180	2	STRG.23072.1,STRG.23072.2,blat.proc3825176.chain_179,blat.proc3825176.chain_182	4
scaffold_28	spliced_intron	3175623	3175744	-	asmbl_38135	none	STRG.29532.1,blat.proc3825162.chain_2695	2	blat.proc3825162.chain_2694	1
scaffold_5	alt_acceptor	189959	189960	+	asmbl_45088,asmbl_45089,asmbl_45090	none	STRG.5587.3,STRG.5587.4,STRG.5587.5	3	STRG.5587.1	1
scaffold_20	alt_acceptor	7471394	7471395	-	asmbl_25911	none	blat.proc3825160.chain_467	1	blat.proc3825160.chain_459,blat.proc3825160.chain_461,blat.proc3825160.chain_463	3
scaffold_5	alt_acceptor	6664329	6664330	-	asmbl_44127,asmbl_44128	none	STRG.6073.2,STRG.6073.3	2	STRG.6073.1	1
scaffold_21	ends_in_intron	4093399	4093399	+	asmbl_28504	none	Trinity_GG_30630_c0_g1_i7,blat.proc3825176.chain_1241	2	STRG.24000.1,STRG.24000.3,STRG.24000.4,blat.proc3825176.chain_1242	4
scaffold_26	alternate_exon	3335000	3335055	-	asmbl_35481	none	STRG.28012.2	1	STRG.28012.1,blat.proc3825162.chain_1265	2
scaffold_1	spliced_intron	5208949	5209138	+	asmbl_1704,asmbl_1705,asmbl_1707,asmbl_1709,asmbl_1710,asmbl_1711,asmbl_1714,asmbl_1715,asmbl_1717,asmbl_1718	none	STRG.329.1,STRG.329.2,STRG.329.3,blat.proc3825164.chain_465,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_468,blat.proc3825164.chain_471,blat.proc3825164.chain_472,blat.proc3825164.chain_474,blat.proc3825164.chain_476	11	blat.proc3825164.chain_464,blat.proc3825164.chain_470	2
scaffold_9	alt_acceptor	7816385	7816386	+	asmbl_54142	none	STRG.11228.1,blat.proc3825170.chain_16	2	STRG.11228.2	1
scaffold_2	alt_acceptor	2845834	2845835	-	asmbl_22928	none	STRG.1724.1,blat.proc3825148.chain_1660	2	STRG.1724.2	1
scaffold_8	ends_in_intron	16228910	16228910	+	asmbl_53438	none	Trinity_GG_23224_c0_g1_i5,blat.proc3825168.chain_3187	2	STRG.10614.2,Trinity_GG_23224_c0_g1_i2,blat.proc3825168.chain_3188	3
scaffold_14	skipped_exon	12219597	12221273	-	asmbl_13555	none	STRG.17553.2,blat.proc3825156.chain_2378	2	STRG.17553.1	1
scaffold_18	alt_donor	12403944	12403945	-	asmbl_20148	none	STRG.21708.2,blat.proc3825158.chain_2574	2	STRG.21708.1,blat.proc3825158.chain_2575	2
scaffold_9	retained_intron	13040881	13040907	+	asmbl_54483	none	STRG.11611.2	1	STRG.11611.1	1
scaffold_17	spliced_intron	14633366	14633405	+	asmbl_19417	none	STRG.20943.1	1	STRG.20943.2	1
scaffold_27	alt_donor	1109223	1109224	+	asmbl_35995	none	STRG.28611.1,Trinity_GG_33154_c0_g1_i1,blat.proc3825178.chain_1758	3	STRG.28611.2	1
scaffold_3	alternate_exon	7593333	7593501	+	asmbl_40169	none	Trinity_GG_19221_c0_g1_i6,blat.proc3825164.chain_3628	2	STRG.3351.1,Trinity_GG_19221_c0_g1_i1,blat.proc3825164.chain_3626,blat.proc3825164.chain_3629,blat.proc3825164.chain_3630	5
scaffold_5	spliced_intron	10170961	10171274	+	asmbl_45665	none	blat.proc3825166.chain_2511	1	blat.proc3825166.chain_2513	1
scaffold_28	starts_in_intron	2652685	2652685	+	asmbl_37398	none	blat.proc3825178.chain_2669	1	STRG.29457.1,STRG.29457.2,blat.proc3825178.chain_2670,blat.proc3825178.chain_2671	4
scaffold_6	retained_intron	12552240	12553416	-	asmbl_48826,asmbl_48828	none	STRG.8017.2,blat.proc3825152.chain_421	2	STRG.8017.1	1
scaffold_14	retained_exon	3161771	3161863	+	asmbl_11917	none	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i4,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	7
scaffold_7	alternate_exon	12451550	12457230	-	asmbl_51232,asmbl_51233,asmbl_51234	none	STRG.9354.1,STRG.9354.2,STRG.9354.3	3	Trinity_GG_5252_c0_g1_i10,blat.proc3825152.chain_1688	2
scaffold_10	retained_intron	928914	929115	-	asmbl_4013	none	STRG.11969.2,Trinity_GG_6664_c0_g1_i2,blat.proc3825154.chain_533	3	STRG.11969.1,blat.proc3825154.chain_534	2
scaffold_15	alt_donor	15435511	15435512	-	asmbl_14784,asmbl_14786	none	STRG.18932.2,blat.proc3825156.chain_3731,blat.proc3825156.chain_3733	3	blat.proc3825156.chain_3728	1
scaffold_19	alt_acceptor	5155677	5155678	+	asmbl_21355,asmbl_21358	none	STRG.22084.1,STRG.22084.3,blat.proc3825174.chain_3027,blat.proc3825174.chain_3028	4	STRG.22084.4,blat.proc3825174.chain_3026	2
scaffold_22	retained_intron	4404848	4404976	-	asmbl_29254	none	STRG.24862.1,blat.proc3825160.chain_1999	2	blat.proc3825160.chain_2001	1
scaffold_5	retained_intron	15766384	15766471	+	asmbl_46016,asmbl_46017,asmbl_46018,asmbl_46020,asmbl_46022,asmbl_46023	none	blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2918,blat.proc3825166.chain_2920,blat.proc3825166.chain_2921,blat.proc3825166.chain_2923	6	STRG.6771.1,blat.proc3825166.chain_2917,blat.proc3825166.chain_2922	3
scaffold_10	retained_intron	5006392	5006680	-	asmbl_4328,asmbl_4330	none	Trinity_GG_6889_c0_g2_i1,blat.proc3825154.chain_895,blat.proc3825154.chain_896,blat.proc3825154.chain_897	4	STRG.12325.1,STRG.12325.2,blat.proc3825154.chain_893	3
scaffold_9	spliced_intron	11842903	11843151	-	asmbl_55326	none	STRG.11513.2	1	blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	4
scaffold_23	alt_acceptor	2151781	2151782	-	asmbl_30696,asmbl_30697	none	STRG.25684.2,blat.proc3825160.chain_2852,blat.proc3825160.chain_2853	3	STRG.25684.1	1
scaffold_20	alt_donor	1469859	1469860	-	asmbl_25578	none	blat.proc3825158.chain_3738	1	STRG.22868.2,STRG.22868.4,blat.proc3825158.chain_3739	3
scaffold_27	alternate_exon	3404789	3404880	+	asmbl_36199	none	STRG.28815.2	1	STRG.28815.1,Trinity_GG_33242_c0_g1_i1,blat.proc3825178.chain_1960	3
scaffold_22	retained_exon	9718220	9718655	+	asmbl_30315	none	STRG.25308.4	1	STRG.25308.1,blat.proc3825176.chain_2309	2
scaffold_6	alt_acceptor	14079490	14079491	+	asmbl_47571,asmbl_47572	none	STRG.8166.2,blat.proc3825168.chain_621	2	STRG.8166.1,blat.proc3825168.chain_620	2
scaffold_25	spliced_intron	6525867	6525968	-	asmbl_34366	none	blat.proc3825162.chain_926	1	STRG.27535.1	1
scaffold_2	spliced_intron	16286701	16286808	+	asmbl_25108,asmbl_25109,asmbl_25111	none	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2853	3	blat.proc3825164.chain_2852	1
scaffold_2	alt_acceptor	167609	167610	+	asmbl_24079,asmbl_24081	none	STRG.1522.1,blat.proc3825164.chain_1669,blat.proc3825164.chain_1671	3	STRG.1522.2,blat.proc3825164.chain_1668	2
scaffold_10	skipped_exon	1976147	1977391	-	asmbl_4088	none	STRG.12049.2,blat.proc3825154.chain_606	2	STRG.12049.1,STRG.12049.3,blat.proc3825154.chain_607	3
scaffold_15	retained_intron	1501426	1501743	-	asmbl_13955	none	blat.proc3825156.chain_2801	1	blat.proc3825156.chain_2803	1
scaffold_7	alt_donor	9716642	9716643	+	asmbl_50090	none	STRG.9161.2,blat.proc3825168.chain_1685	2	STRG.9161.1,blat.proc3825168.chain_1686	2
scaffold_4	spliced_intron	7389727	7389948	+	asmbl_41499	none	STRG.4591.2	1	STRG.4591.1,blat.proc3825166.chain_1062	2
scaffold_11	spliced_intron	854023	854153	+	asmbl_5307,asmbl_5310	none	STRG.13285.1,blat.proc3825170.chain_1860,blat.proc3825170.chain_1863	3	Trinity_GG_24628_c0_g1_i5,blat.proc3825170.chain_1859	2
scaffold_2	starts_in_intron	10719058	10719058	+	asmbl_24726	none	STRG.2241.2	1	STRG.2241.1,Trinity_GG_18572_c0_g1_i1,Trinity_GG_18572_c0_g1_i5,blat.proc3825164.chain_2426,blat.proc3825164.chain_2427	5
scaffold_15	ends_in_intron	12749712	12749712	+	asmbl_15601	none	blat.proc3825172.chain_3381	1	STRG.18732.1,STRG.18732.2,blat.proc3825172.chain_3377,blat.proc3825172.chain_3378,blat.proc3825172.chain_3379	5
scaffold_8	alternate_exon	17301081	17301121	-	asmbl_52447	none	blat.proc3825152.chain_2899	1	STRG.10653.1,STRG.10653.2,STRG.10653.3,blat.proc3825152.chain_2898,blat.proc3825152.chain_2900,blat.proc3825152.chain_2901	6
scaffold_27	alt_donor	6076958	6076959	+	asmbl_36375	none	STRG.29010.2,blat.proc3825178.chain_2222	2	STRG.29010.1,Trinity_GG_33370_c1_g1_i4,blat.proc3825178.chain_2221	3
scaffold_7	spliced_intron	13210711	13210856	+	asmbl_50320,asmbl_50321,asmbl_50323,asmbl_50325	none	STRG.9429.2,STRG.9429.3,STRG.9429.4,blat.proc3825168.chain_1943,blat.proc3825168.chain_1944,blat.proc3825168.chain_1946	6	STRG.9429.1,blat.proc3825168.chain_1947	2
scaffold_8	alternate_exon	12321630	12322479	-	asmbl_52190,asmbl_52195,asmbl_52196	none	STRG.10413.2,STRG.10413.3,blat.proc3825152.chain_2631,blat.proc3825152.chain_2635	4	STRG.10413.1,blat.proc3825152.chain_2632,blat.proc3825152.chain_2633,blat.proc3825152.chain_2636	4
scaffold_21	ends_in_intron	457365	457365	-	asmbl_27322	none	Trinity_GG_13227_c0_g1_i3,blat.proc3825160.chain_857	2	STRG.23740.1,blat.proc3825160.chain_855,blat.proc3825160.chain_856	3
scaffold_13	alt_acceptor	11586715	11586716	+	asmbl_11289,asmbl_11290,asmbl_11291,asmbl_11298	none	STRG.16316.3,STRG.16316.4,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030	4	blat.proc3825172.chain_1028,blat.proc3825172.chain_1036	2
scaffold_13	spliced_intron	3352875	3353012	-	asmbl_9535	none	STRG.15647.1,blat.proc3825156.chain_529	2	blat.proc3825156.chain_528	1
scaffold_14	skipped_exon	10371561	10372201	-	asmbl_13418	none	STRG.17390.1,blat.proc3825156.chain_2237	2	STRG.17390.2,blat.proc3825156.chain_2238	2
scaffold_16	skipped_exon	6118442	6119000	+	asmbl_16269	none	blat.proc3825174.chain_240	1	STRG.19343.1,blat.proc3825174.chain_239,blat.proc3825174.chain_242,blat.proc3825174.chain_244	4
scaffold_22	spliced_intron	322655	323437	+	asmbl_29838,asmbl_29845	none	STRG.24686.1,blat.proc3825176.chain_1815,blat.proc3825176.chain_1819	3	STRG.24686.2	1
scaffold_6	alt_donor	13148460	13148461	-	asmbl_48882	none	STRG.8071.1,Trinity_GG_4591_c0_g1_i2,blat.proc3825152.chain_480	3	STRG.8071.2,Trinity_GG_4591_c0_g1_i1,blat.proc3825152.chain_479	3
scaffold_13	alt_acceptor	8954856	8954857	+	asmbl_11163,asmbl_11166,asmbl_11167	none	STRG.16167.1,STRG.16167.2,blat.proc3825172.chain_868,blat.proc3825172.chain_870	4	STRG.16167.3,blat.proc3825172.chain_867,blat.proc3825172.chain_871	3
scaffold_39	alt_donor	34255	34256	-	asmbl_41069,asmbl_41071	none	STRG.30041.1,STRG.30041.3,blat.proc3825162.chain_3204	3	STRG.30041.2	1
scaffold_8	spliced_intron	764211	764246	+	asmbl_52668	none	STRG.9733.2	1	STRG.9733.1,Trinity_GG_22716_c1_g1_i1,blat.proc3825168.chain_2262	3
scaffold_13	skipped_exon	7717856	7718307	-	asmbl_9903	none	STRG.16058.1,blat.proc3825156.chain_890	2	STRG.16058.2,blat.proc3825156.chain_888	2
scaffold_26	spliced_intron	9781574	9781736	+	asmbl_35268	none	STRG.28520.1,Trinity_GG_33037_c0_g1_i2,blat.proc3825178.chain_1533	3	Trinity_GG_33037_c0_g1_i1,blat.proc3825178.chain_1532	2
scaffold_1	alternate_exon	12489214	12489298	+	asmbl_2227	none	STRG.862.2,Trinity_GG_17849_c0_g1_i2,blat.proc3825164.chain_1053	3	STRG.862.1	1
scaffold_3	skipped_exon	16076915	16078214	-	asmbl_39476	none	STRG.3896.3	1	STRG.3896.1,STRG.3896.2,blat.proc3825150.chain_7,blat.proc3825150.chain_8	4
scaffold_2	alt_donor	17611303	17611304	+	asmbl_25187	none	STRG.2653.3	1	STRG.2653.1,STRG.2653.2,blat.proc3825164.chain_2942,blat.proc3825164.chain_2943,blat.proc3825164.chain_2944	5
scaffold_2	alternate_exon	880217	880252	+	asmbl_24121	none	STRG.1563.2	1	STRG.1563.1,blat.proc3825164.chain_1707,blat.proc3825164.chain_1708	3
scaffold_11	spliced_intron	9926131	9926272	+	asmbl_5921	none	STRG.14011.1,Trinity_GG_25046_c1_g1_i2,blat.proc3825170.chain_2579	3	blat.proc3825170.chain_2580	1
scaffold_28	starts_in_intron	7876552	7876552	-	asmbl_38430,asmbl_38431	none	blat.proc3825162.chain_3028,blat.proc3825162.chain_3030	2	STRG.29870.1,blat.proc3825162.chain_3026,blat.proc3825162.chain_3029	3
scaffold_20	ends_in_intron	11101989	11101989	+	asmbl_27011	none	Trinity_GG_30385_c0_g1_i1,blat.proc3825176.chain_812	2	STRG.23628.1,STRG.23628.2,blat.proc3825176.chain_813,blat.proc3825176.chain_814	4
scaffold_27	spliced_intron	4755122	4755207	+	asmbl_36313	none	STRG.28913.1	1	Trinity_GG_33333_c2_g1_i1	1
scaffold_13	starts_in_intron	4378143	4378143	+	asmbl_10790	none	STRG.15764.5	1	STRG.15764.1,STRG.15764.2,STRG.15764.3,STRG.15764.4	4
scaffold_12	alternate_exon	11690937	11691694	-	asmbl_8824	none	STRG.15092.2,blat.proc3825154.chain_3615	2	STRG.15092.1,blat.proc3825154.chain_3613	2
scaffold_10	starts_in_intron	17632129	17632129	+	asmbl_3785	none	Trinity_GG_24537_c0_g1_i2,blat.proc3825170.chain_1703	2	STRG.13211.1	1
scaffold_5	alt_donor	4698130	4698131	+	asmbl_45288	none	STRG.5925.4	1	STRG.5925.5,blat.proc3825166.chain_2151	2
scaffold_2	spliced_intron	13064373	13064567	+	asmbl_24811,asmbl_24812,asmbl_24813,asmbl_24814	none	STRG.2332.1,STRG.2332.2,blat.proc3825164.chain_2494,blat.proc3825164.chain_2495,blat.proc3825164.chain_2496,blat.proc3825164.chain_2497,blat.proc3825164.chain_2498,blat.proc3825164.chain_2500	8	blat.proc3825164.chain_2499	1
scaffold_6	starts_in_intron	19034458	19034458	+	asmbl_47864	none	Trinity_GG_21986_c0_g1_i2,blat.proc3825168.chain_958	2	STRG.8569.1,blat.proc3825168.chain_957	2
scaffold_6	spliced_intron	3320771	3320929	-	asmbl_48245	none	STRG.7338.3	1	blat.proc3825150.chain_3423	1
scaffold_1	retained_intron	4864196	4864311	-	asmbl_218	none	STRG.292.2,blat.proc3825148.chain_256	2	STRG.292.1,blat.proc3825148.chain_258	2
scaffold_5	retained_intron	14262861	14263018	+	asmbl_45918,asmbl_45919,asmbl_45923	none	blat.proc3825166.chain_2789,blat.proc3825166.chain_2790,blat.proc3825166.chain_2791	3	STRG.6638.1,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2792	6
scaffold_6	retained_exon	2744391	2744477	-	asmbl_48156	none	STRG.7271.2,blat.proc3825150.chain_3317	2	STRG.7271.1,Trinity_GG_4023_c0_g1_i1	2
scaffold_7	retained_intron	12540189	12540286	-	asmbl_51241	none	blat.proc3825152.chain_1717	1	STRG.9363.1,STRG.9363.2,STRG.9363.3,STRG.9363.4,STRG.9363.5,blat.proc3825152.chain_1713,blat.proc3825152.chain_1714	7
scaffold_22	retained_intron	7488327	7488420	-	asmbl_29407	none	STRG.25093.2,Trinity_GG_14018_c0_g1_i1,blat.proc3825160.chain_2250	3	STRG.25093.1,blat.proc3825160.chain_2249	2
scaffold_9	retained_intron	9405231	9405353	-	asmbl_55162	none	Trinity_GG_6227_c0_g1_i2,Trinity_GG_6227_c0_g1_i3,blat.proc3825152.chain_3480,blat.proc3825152.chain_3481	4	STRG.11299.1,blat.proc3825152.chain_3482	2
scaffold_6	alt_acceptor	3287459	3287460	-	asmbl_48236	none	STRG.7334.1	1	STRG.7334.2,STRG.7334.3	2
scaffold_5	starts_in_intron	15563614	15563614	-	asmbl_44705	none	blat.proc3825150.chain_2954	1	STRG.6751.1,blat.proc3825150.chain_2952,blat.proc3825150.chain_2953	3
scaffold_4	starts_in_intron	5738987	5738987	-	asmbl_42634	none	blat.proc3825150.chain_714	1	STRG.4470.1,STRG.4470.2,blat.proc3825150.chain_713	3
scaffold_19	retained_exon	12256728	12256802	+	asmbl_21774	none	STRG.22553.2	1	STRG.22553.1,blat.proc3825174.chain_3518	2
scaffold_6	retained_intron	13657305	13657555	-	asmbl_48931	none	blat.proc3825152.chain_527	1	STRG.8106.1,STRG.8106.3,blat.proc3825152.chain_524,blat.proc3825152.chain_525,blat.proc3825152.chain_526	5
scaffold_14	alt_donor	6450437	6450438	-	asmbl_13134,asmbl_13136	none	STRG.17095.1,Trinity_GG_9602_c0_g1_i3,blat.proc3825156.chain_1920,blat.proc3825156.chain_1921,blat.proc3825156.chain_1922	5	STRG.17095.2	1
scaffold_17	alt_donor	14633366	14633367	+	asmbl_19417	none	STRG.20943.1	1	STRG.20943.3,blat.proc3825174.chain_1755	2
scaffold_5	alt_acceptor	6618025	6618026	-	asmbl_44117,asmbl_44120	none	STRG.6066.1,blat.proc3825150.chain_2270,blat.proc3825150.chain_2271	3	STRG.6066.2	1
scaffold_5	spliced_intron	6578599	6580344	-	asmbl_44097	none	STRG.6057.2,blat.proc3825150.chain_2180	2	STRG.6057.1,blat.proc3825150.chain_2178	2
scaffold_5	retained_intron	8554846	8554950	-	asmbl_44221	none	STRG.6194.2,Trinity_GG_3480_c0_g1_i3,blat.proc3825150.chain_2387	3	STRG.6194.1	1
scaffold_10	retained_exon	9061441	9061569	-	asmbl_4666	none	STRG.12655.2,blat.proc3825154.chain_1198	2	STRG.12655.1,blat.proc3825154.chain_1202	2
scaffold_6	alt_donor	6939265	6939266	+	asmbl_47025,asmbl_47027	none	STRG.7602.1,STRG.7602.2,blat.proc3825168.chain_42	3	blat.proc3825168.chain_44	1
scaffold_11	spliced_intron	171562	171780	+	asmbl_5261	none	STRG.13244.1	1	blat.proc3825170.chain_1818	1
scaffold_25	alternate_exon	989676	989828	+	asmbl_33365	none	STRG.27159.1,blat.proc3825178.chain_303	2	STRG.27159.2	1
scaffold_12	spliced_intron	110425	111191	-	asmbl_8274	none	STRG.14422.1,blat.proc3825154.chain_2943	2	STRG.14422.2,Trinity_GG_8052_c0_g2_i1,blat.proc3825154.chain_2944	3
scaffold_10	retained_intron	716590	716853	-	asmbl_3986,asmbl_3987,asmbl_3990,asmbl_3992	none	STRG.11957.2,STRG.11957.3,STRG.11957.5,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541	5	STRG.11957.1,blat.proc3825154.chain_545	2
scaffold_26	spliced_intron	6320095	6320279	-	asmbl_35671	none	STRG.28328.3,blat.proc3825162.chain_1491	2	STRG.28328.1,STRG.28328.2,blat.proc3825162.chain_1492	3
scaffold_18	starts_in_intron	2079626	2079626	-	asmbl_19702	none	blat.proc3825158.chain_2061	1	Trinity_GG_11822_c0_g1_i2,blat.proc3825158.chain_2060	2
scaffold_6	alt_donor	7517140	7517141	-	asmbl_48500,asmbl_48502	none	STRG.7655.4,blat.proc3825152.chain_11	2	STRG.7655.1,STRG.7655.3,STRG.7655.5,Trinity_GG_4298_c0_g2_i1,blat.proc3825152.chain_13,blat.proc3825152.chain_14,blat.proc3825152.chain_16	7
scaffold_22	starts_in_intron	7945589	7945589	+	asmbl_30240,asmbl_30243	none	STRG.25149.2,blat.proc3825176.chain_2292	2	STRG.25149.1,blat.proc3825176.chain_2291	2
scaffold_11	alt_donor	9018518	9018519	-	asmbl_6901	none	blat.proc3825154.chain_2410	1	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2407,blat.proc3825154.chain_2408	5
scaffold_15	spliced_intron	4964556	4964665	+	asmbl_15175,asmbl_15177,asmbl_15181	none	STRG.18207.2,STRG.18207.3,blat.proc3825172.chain_2889,blat.proc3825172.chain_2891	4	STRG.18207.4	1
scaffold_18	alt_acceptor	2156605	2156606	-	asmbl_19711	none	STRG.21115.2,blat.proc3825158.chain_2027	2	STRG.21115.1,blat.proc3825158.chain_2028,blat.proc3825158.chain_2029	3
scaffold_18	retained_exon	13268341	13268520	+	asmbl_21006	none	STRG.21764.1,blat.proc3825174.chain_2763	2	STRG.21764.2,blat.proc3825174.chain_2762	2
scaffold_26	ends_in_intron	9608765	9608765	+	asmbl_35246,asmbl_35248	none	STRG.28513.2,blat.proc3825178.chain_1631	2	STRG.28513.1,Trinity_GG_33085_c0_g1_i3,blat.proc3825178.chain_1633	3
scaffold_6	alt_donor	573670	573671	+	asmbl_46666	none	Trinity_GG_21206_c0_g1_i3,blat.proc3825166.chain_3278	2	STRG.7115.2,blat.proc3825166.chain_3277	2
scaffold_3	alt_acceptor	16442309	16442310	+	asmbl_40624,asmbl_40625	none	STRG.3922.2,STRG.3922.3	2	STRG.3922.1,Trinity_GG_19509_c0_g1_i3,blat.proc3825166.chain_403,blat.proc3825166.chain_404	4
scaffold_17	starts_in_intron	14268152	14268152	-	asmbl_18416	none	Trinity_GG_11728_c0_g1_i2,blat.proc3825158.chain_1872	2	STRG.20899.1	1
scaffold_22	spliced_intron	1706545	1706810	-	asmbl_29147,asmbl_29148	none	STRG.24761.1,STRG.24761.2,Trinity_GG_13841_c0_g1_i1,Trinity_GG_13841_c0_g1_i3,blat.proc3825160.chain_1958,blat.proc3825160.chain_1959	6	blat.proc3825160.chain_1960	1
scaffold_26	spliced_intron	3791282	3791394	+	asmbl_34836	none	blat.proc3825178.chain_1150	1	blat.proc3825178.chain_1153	1
scaffold_11	spliced_intron	13384103	13384406	+	asmbl_6052	none	STRG.14203.2,blat.proc3825170.chain_2760	2	STRG.14203.1,STRG.14203.3,blat.proc3825170.chain_2761	3
scaffold_3	alt_acceptor	15785222	15785223	-	asmbl_39451	none	STRG.3859.2	1	STRG.3859.1,blat.proc3825148.chain_3733	2
scaffold_2	starts_in_intron	5184681	5184681	-	asmbl_23135	none	blat.proc3825148.chain_1971	1	STRG.1929.1,blat.proc3825148.chain_1965,blat.proc3825148.chain_1967,blat.proc3825148.chain_1970	4
scaffold_8	alt_donor	11298998	11298999	+	asmbl_53215,asmbl_53216,asmbl_53218	none	STRG.10343.2,STRG.10343.3,Trinity_GG_23079_c0_g1_i4,blat.proc3825168.chain_2925	4	STRG.10343.1,Trinity_GG_23079_c0_g1_i2,Trinity_GG_23079_c0_g1_i3,blat.proc3825168.chain_2924,blat.proc3825168.chain_2926	5
scaffold_17	alt_donor	14394653	14394654	+	asmbl_19407	none	STRG.20919.2,blat.proc3825174.chain_1810	2	STRG.20919.1,STRG.20919.3,blat.proc3825174.chain_1808,blat.proc3825174.chain_1809	4
scaffold_2	spliced_intron	9791002	9791168	+	asmbl_24685,asmbl_24686,asmbl_24687,asmbl_24689,asmbl_24690	none	STRG.2185.1,Trinity_GG_18541_c0_g1_i1,Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2361,blat.proc3825164.chain_2363,blat.proc3825164.chain_2364,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	8	Trinity_GG_18541_c0_g1_i4,blat.proc3825164.chain_2362	2
scaffold_15	retained_intron	13760201	13760410	-	asmbl_14662	none	STRG.18808.2,Trinity_GG_10569_c0_g1_i2,blat.proc3825156.chain_3661	3	STRG.18808.3,Trinity_GG_10569_c0_g1_i3,blat.proc3825156.chain_3662,blat.proc3825156.chain_3664	4
scaffold_16	spliced_intron	6193425	6193670	+	asmbl_16293	none	STRG.19370.2,blat.proc3825174.chain_258	2	STRG.19370.1,blat.proc3825174.chain_260,blat.proc3825174.chain_261	3
scaffold_13	alt_acceptor	7218244	7218245	+	asmbl_11021	none	blat.proc3825172.chain_809	1	STRG.16019.1,blat.proc3825172.chain_810,blat.proc3825172.chain_811,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_815	6
scaffold_5	starts_in_intron	12926970	12926970	-	asmbl_44497	none	blat.proc3825150.chain_2705	1	STRG.6520.1,STRG.6520.2,Trinity_GG_3661_c0_g1_i1,blat.proc3825150.chain_2706	4
scaffold_4	alt_donor	12571398	12571399	-	asmbl_42931	none	STRG.4898.2,blat.proc3825150.chain_1086	2	STRG.4898.1,blat.proc3825150.chain_1087	2
scaffold_17	starts_in_intron	5071478	5071478	+	asmbl_18804,asmbl_18805	none	blat.proc3825174.chain_1044,blat.proc3825174.chain_1047	2	STRG.20234.1,STRG.20234.2,STRG.20234.3,STRG.20234.4,STRG.20234.5,Trinity_GG_28366_c0_g1_i1,Trinity_GG_28366_c0_g1_i2,blat.proc3825174.chain_1045,blat.proc3825174.chain_1046	9
scaffold_4	alt_acceptor	5228399	5228400	-	asmbl_42574,asmbl_42577	none	STRG.4416.2,STRG.4416.4,blat.proc3825150.chain_648	3	STRG.4416.3	1
scaffold_3	starts_in_intron	2183099	2183099	-	asmbl_38734	none	blat.proc3825148.chain_2900	1	STRG.3017.1,blat.proc3825148.chain_2898,blat.proc3825178.chain_3397,blat.proc3825178.chain_3398	4
scaffold_26	skipped_exon	6703883	6704797	-	asmbl_35701	none	STRG.28371.3	1	STRG.28371.1,STRG.28371.2,blat.proc3825162.chain_1602,blat.proc3825162.chain_1604	4
scaffold_3	starts_in_intron	1268814	1268814	-	asmbl_38702	none	Trinity_GG_1613_c0_g1_i1	1	STRG.2958.1	1
scaffold_26	alt_acceptor	2960706	2960707	-	asmbl_35458	none	STRG.27989.4,blat.proc3825162.chain_1303	2	STRG.27989.1,STRG.27989.2,STRG.27989.3,blat.proc3825162.chain_1299,blat.proc3825162.chain_1300,blat.proc3825162.chain_1301	6
scaffold_21	ends_in_intron	6399240	6399240	+	asmbl_28636	none	blat.proc3825176.chain_1280	1	STRG.24166.1,blat.proc3825176.chain_1279,blat.proc3825176.chain_1281,blat.proc3825176.chain_1282	4
scaffold_23	ends_in_intron	4033304	4033304	+	asmbl_31474	none	STRG.25814.2	1	STRG.25814.1	1
scaffold_26	starts_in_intron	1890817	1890817	-	asmbl_35421	none	blat.proc3825162.chain_1243	1	STRG.27936.1,blat.proc3825162.chain_1241,blat.proc3825162.chain_1242	3
scaffold_24	ends_in_intron	6224599	6224599	-	asmbl_32939,asmbl_32941	none	Trinity_GG_14882_c1_g1_i1,blat.proc3825160.chain_3738	2	STRG.26685.1,STRG.26685.2,STRG.26685.3,STRG.26685.4,STRG.26685.5,STRG.26685.6,blat.proc3825160.chain_3732,blat.proc3825160.chain_3735,blat.proc3825160.chain_3737	9
scaffold_3	alt_acceptor	15784164	15784165	-	asmbl_39450	none	STRG.3859.3	1	STRG.3859.1,STRG.3859.2,blat.proc3825148.chain_3732,blat.proc3825148.chain_3733	4
scaffold_4	alt_donor	6948344	6948345	+	asmbl_41432,asmbl_41433	none	STRG.4536.1,STRG.4536.3	2	STRG.4536.2,Trinity_GG_19782_c0_g1_i2,blat.proc3825166.chain_912	3
scaffold_6	starts_in_intron	11116432	11116432	-	asmbl_48739	none	STRG.7925.3	1	STRG.7925.1	1
scaffold_7	retained_intron	15248021	15248121	+	asmbl_50422	none	blat.proc3825168.chain_2114	1	STRG.9540.1,STRG.9540.2,STRG.9540.3,blat.proc3825168.chain_2111,blat.proc3825168.chain_2112	5
scaffold_17	alt_acceptor	10123523	10123524	+	asmbl_19182	none	STRG.20628.3	1	STRG.20628.1,STRG.20628.2	2
scaffold_13	alt_acceptor	11852934	11852935	+	asmbl_11313	none	STRG.16321.2	1	STRG.16321.1,blat.proc3825172.chain_1120	2
scaffold_8	retained_exon	12728677	12728723	-	asmbl_52223	none	STRG.10451.1,blat.proc3825152.chain_2672	2	STRG.10451.2,blat.proc3825152.chain_2671	2
scaffold_3	alt_donor	10631361	10631362	+	asmbl_40282	none	STRG.3513.7	1	STRG.3513.1,STRG.3513.2,STRG.3513.3,STRG.3513.4,STRG.3513.5,STRG.3513.6,blat.proc3825164.chain_3682,blat.proc3825164.chain_3684,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688,blat.proc3825164.chain_3689,blat.proc3825164.chain_3691	13
scaffold_21	retained_intron	4948171	4948378	+	asmbl_28544	none	STRG.24045.2,blat.proc3825176.chain_1197	2	STRG.24045.1,blat.proc3825176.chain_1196	2
scaffold_4	alternate_exon	14104104	14104540	+	asmbl_41843	none	STRG.5030.1	1	STRG.5030.2	1
scaffold_21	spliced_intron	7010245	7010833	-	asmbl_27772,asmbl_27773,asmbl_27774	none	STRG.24233.1,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392	4	STRG.24233.2,blat.proc3825160.chain_1393	2
scaffold_11	spliced_intron	8085021	8085159	-	asmbl_6836	none	STRG.13817.1,Trinity_GG_7739_c0_g1_i2,blat.proc3825154.chain_2388	3	Trinity_GG_7739_c0_g1_i1,blat.proc3825154.chain_2387	2
scaffold_27	alt_acceptor	2796585	2796586	+	asmbl_36112,asmbl_36116	none	STRG.28760.1,blat.proc3825178.chain_1917	2	blat.proc3825178.chain_1916	1
scaffold_25	alt_acceptor	8049524	8049525	+	asmbl_33717	none	blat.proc3825178.chain_745	1	STRG.27635.1,blat.proc3825178.chain_744	2
scaffold_2	alternate_exon	3746160	3746251	-	asmbl_22993	none	STRG.1805.1,blat.proc3825148.chain_1685	2	STRG.1805.2,blat.proc3825148.chain_1686	2
scaffold_22	skipped_exon	10044730	10045437	-	asmbl_29580	none	STRG.25357.3	1	STRG.25357.1,STRG.25357.2,STRG.25357.4	3
scaffold_20	retained_exon	11085819	11086249	-	asmbl_26136	none	STRG.23625.1,Trinity_GG_13173_c0_g1_i1,blat.proc3825160.chain_726	3	STRG.23625.2,Trinity_GG_13173_c0_g1_i3,blat.proc3825160.chain_727	3
scaffold_8	retained_exon	4665199	4665258	-	asmbl_51785	none	STRG.9927.1,blat.proc3825152.chain_2183	2	blat.proc3825152.chain_2182	1
scaffold_26	starts_in_intron	9842320	9842320	-	asmbl_35794	none	Trinity_GG_15923_c0_g1_i3,blat.proc3825162.chain_1674	2	Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	2
scaffold_28	alt_acceptor	7881061	7881062	-	asmbl_38427	none	STRG.29870.1,blat.proc3825162.chain_3029	2	blat.proc3825162.chain_3026	1
scaffold_4	ends_in_intron	12378201	12378201	-	asmbl_42908	none	Trinity_GG_2722_c1_g1_i2,blat.proc3825150.chain_1071	2	STRG.4872.1,blat.proc3825150.chain_1072	2
scaffold_2	starts_in_intron	10877681	10877681	+	asmbl_24736	none	Trinity_GG_18581_c0_g1_i6,blat.proc3825164.chain_2438	2	STRG.2245.1,STRG.2245.2,blat.proc3825164.chain_2436,blat.proc3825164.chain_2437	4
scaffold_26	retained_intron	9943076	9943771	-	asmbl_35803,asmbl_35804	none	STRG.28526.1,STRG.28526.2,Trinity_GG_15942_c0_g1_i1,Trinity_GG_15942_c1_g1_i1,blat.proc3825162.chain_1703,blat.proc3825162.chain_1704	6	STRG.28526.3	1
scaffold_11	alternate_exon	8472569	8478871	+	asmbl_5783	none	STRG.13864.1,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2291	3	Trinity_GG_24888_c0_g1_i1,blat.proc3825170.chain_2290	2
scaffold_17	retained_intron	8846095	8846264	+	asmbl_19024,asmbl_19027	none	STRG.20495.2,Trinity_GG_28543_c0_g1_i6,blat.proc3825174.chain_1355	3	STRG.20495.1,STRG.20495.3,blat.proc3825174.chain_1351,blat.proc3825174.chain_1353	4
scaffold_13	retained_exon	6291541	6291693	+	asmbl_10917,asmbl_10922	none	STRG.15925.1,blat.proc3825172.chain_660,blat.proc3825172.chain_661	3	STRG.15925.2,blat.proc3825172.chain_658,blat.proc3825172.chain_659	3
scaffold_6	spliced_intron	4832299	4832373	-	asmbl_48360	none	STRG.7461.1,blat.proc3825150.chain_3627	2	blat.proc3825150.chain_3628	1
scaffold_8	alternate_exon	11829102	11829146	+	asmbl_53274	none	STRG.10387.2	1	STRG.10387.1,blat.proc3825168.chain_2982	2
scaffold_25	retained_intron	6253172	6253303	+	asmbl_33603	none	Trinity_GG_32481_c0_g1_i2,blat.proc3825178.chain_624	2	STRG.27510.1,blat.proc3825178.chain_623,blat.proc3825178.chain_625,blat.proc3825178.chain_626	4
scaffold_18	ends_in_intron	8883474	8883474	-	asmbl_20034,asmbl_20035	none	STRG.21551.4,STRG.21551.5,Trinity_GG_12055_c0_g1_i2,Trinity_GG_12055_c0_g1_i3,blat.proc3825158.chain_2469,blat.proc3825158.chain_2470	6	STRG.21551.3	1
scaffold_12	retained_intron	1059560	1059598	+	asmbl_7454,asmbl_7456,asmbl_7457	none	STRG.14447.1,STRG.14447.2,STRG.14447.3,Trinity_GG_25255_c1_g1_i1	4	STRG.14447.4,blat.proc3825170.chain_2948	2
scaffold_1	skipped_exon	6327569	6328959	+	asmbl_1830	none	STRG.431.1,Trinity_GG_17588_c0_g1_i2,blat.proc3825164.chain_571	3	STRG.431.2,blat.proc3825164.chain_572	2
scaffold_3	alternate_exon	6184449	6186551	-	asmbl_38912	none	blat.proc3825148.chain_3120	1	STRG.3266.3,blat.proc3825148.chain_3118	2
scaffold_11	ends_in_intron	13085852	13085852	+	asmbl_6029	none	blat.proc3825170.chain_2728	1	STRG.14184.1,blat.proc3825170.chain_2726	2
scaffold_12	ends_in_intron	2271879	2271879	-	asmbl_8321	none	STRG.14491.3,blat.proc3825154.chain_2986	2	STRG.14491.1,STRG.14491.2,blat.proc3825154.chain_2987	3
scaffold_13	retained_intron	1238835	1239623	+	asmbl_10545,asmbl_10547,asmbl_10548	none	STRG.15494.5,STRG.15494.7,Trinity_GG_25867_c0_g1_i7,Trinity_GG_25867_c0_g1_i8,Trinity_GG_25867_c2_g1_i1,blat.proc3825172.chain_309,blat.proc3825172.chain_310,blat.proc3825172.chain_315	8	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.6,Trinity_GG_25867_c0_g1_i1,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_308,blat.proc3825172.chain_311,blat.proc3825172.chain_312	11
scaffold_2	retained_intron	16286701	16286808	+	asmbl_25112	none	blat.proc3825164.chain_2852	1	STRG.2562.1,STRG.2562.2,blat.proc3825164.chain_2853	3
scaffold_23	spliced_intron	7915714	7915792	-	asmbl_31057,asmbl_31058	none	STRG.26100.1,STRG.26100.2,blat.proc3825160.chain_3253,blat.proc3825160.chain_3255	4	Trinity_GG_14594_c1_g1_i2,blat.proc3825160.chain_3254	2
scaffold_2	retained_exon	1595546	1595634	+	asmbl_24211,asmbl_24213,asmbl_24214	none	STRG.1627.1,STRG.1627.2,STRG.1627.3,blat.proc3825164.chain_1823	4	STRG.1627.4	1
scaffold_15	spliced_intron	4492518	4492646	+	asmbl_15140,asmbl_15142,asmbl_15143,asmbl_15144,asmbl_15146,asmbl_15148	none	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2857	8	blat.proc3825172.chain_2858	1
scaffold_21	alt_acceptor	8278462	8278463	+	asmbl_28804,asmbl_28805,asmbl_28807	none	STRG.24368.1,STRG.24368.2,STRG.24368.4	3	STRG.24368.3,blat.proc3825176.chain_1550	2
scaffold_12	alt_acceptor	16315383	16315384	-	asmbl_9118	none	STRG.15386.1	1	STRG.15386.2,Trinity_GG_8634_c1_g1_i2,blat.proc3825156.chain_242	3
scaffold_8	alternate_exon	1128524	1128924	+	asmbl_52682	none	STRG.9752.2	1	STRG.9752.1,STRG.9752.3	2
scaffold_6	retained_exon	17886316	17886424	+	asmbl_47797	none	STRG.8482.3,Trinity_GG_21935_c0_g1_i2,blat.proc3825168.chain_877	3	Trinity_GG_21935_c0_g1_i6,blat.proc3825168.chain_876	2
scaffold_13	alt_acceptor	9990743	9990744	+	asmbl_11223	none	STRG.16239.2,blat.proc3825172.chain_968	2	STRG.16239.1	1
scaffold_19	retained_intron	3683526	3683854	+	asmbl_21335,asmbl_21337	none	blat.proc3825174.chain_3084,blat.proc3825174.chain_3085	2	STRG.22058.2,STRG.22058.5	2
scaffold_20	spliced_intron	11678784	11679395	-	asmbl_26180,asmbl_26182	none	STRG.23672.1,blat.proc3825160.chain_760,blat.proc3825160.chain_761	3	STRG.23672.2,blat.proc3825160.chain_758,blat.proc3825160.chain_759	3
scaffold_12	retained_exon	3009495	3009646	-	asmbl_8346	none	STRG.14541.2	1	STRG.14541.1,blat.proc3825154.chain_3019	2
scaffold_1	alt_donor	14563446	14563447	-	asmbl_940	none	STRG.1059.2,blat.proc3825148.chain_1068	2	STRG.1059.1,blat.proc3825148.chain_1069	2
scaffold_13	alt_acceptor	13283823	13283824	+	asmbl_11384	none	STRG.16401.1,blat.proc3825172.chain_1194	2	STRG.16401.2	1
scaffold_4	alternate_exon	10915446	10915641	+	asmbl_41683	none	STRG.4813.1,blat.proc3825166.chain_1271	2	STRG.4813.2,blat.proc3825166.chain_1270	2
scaffold_20	alternate_exon	6178966	6180971	+	asmbl_26654	none	STRG.23224.1,blat.proc3825176.chain_397	2	blat.proc3825176.chain_398	1
scaffold_12	starts_in_intron	7431608	7431608	+	asmbl_7758	none	Trinity_GG_25502_c0_g2_i1,blat.proc3825170.chain_3368	2	STRG.14827.1,STRG.14827.2,Trinity_GG_25502_c0_g1_i1,blat.proc3825170.chain_3367	4
scaffold_9	retained_intron	17790249	17790655	-	asmbl_55680,asmbl_55682,asmbl_55683	none	STRG.11865.2,Trinity_GG_6570_c0_g1_i2,blat.proc3825154.chain_356,blat.proc3825154.chain_357	4	STRG.11865.1,Trinity_GG_6570_c0_g1_i3,blat.proc3825154.chain_358	3
scaffold_4	alt_acceptor	12628852	12628853	-	asmbl_42940	none	STRG.4902.3	1	blat.proc3825150.chain_1040	1
scaffold_4	alt_acceptor	19587594	19587595	-	asmbl_43453	none	STRG.5543.2,blat.proc3825150.chain_1740	2	STRG.5543.1,blat.proc3825150.chain_1743	2
scaffold_19	retained_exon	11483437	11483478	-	asmbl_22409	none	STRG.22486.2,blat.proc3825158.chain_3247	2	blat.proc3825158.chain_3244	1
scaffold_2	alternate_exon	4018048	4018156	-	asmbl_23036	none	STRG.1846.1,blat.proc3825148.chain_1815	2	STRG.1846.2	1
scaffold_23	alternate_exon	10974737	10975456	+	asmbl_31904	none	STRG.26307.2	1	STRG.26307.4	1
scaffold_1	alt_acceptor	19841703	19841704	+	asmbl_2599	none	STRG.1363.1,STRG.1363.2,blat.proc3825164.chain_1483	3	STRG.1363.3,blat.proc3825164.chain_1482	2
scaffold_12	alt_donor	4613553	4613554	-	asmbl_8412,asmbl_8416,asmbl_8419	none	STRG.14639.1,blat.proc3825154.chain_3138,blat.proc3825154.chain_3140,blat.proc3825154.chain_3142	4	STRG.14639.2,STRG.14639.4,blat.proc3825154.chain_3136,blat.proc3825154.chain_3139	4
scaffold_16	alt_acceptor	4149798	4149799	+	asmbl_16177	none	STRG.19230.1,Trinity_GG_27835_c0_g1_i1,blat.proc3825174.chain_113	3	STRG.19230.2,STRG.19230.3	2
scaffold_19	spliced_intron	12973202	12973409	-	asmbl_22573,asmbl_22576,asmbl_22578	none	STRG.22618.1,STRG.22618.2,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3363	6	STRG.22618.3	1
scaffold_10	ends_in_intron	7274521	7274521	+	asmbl_3272	none	blat.proc3825170.chain_1146	1	STRG.12540.1,STRG.12540.2,STRG.12540.3,STRG.12540.4,blat.proc3825170.chain_1145,blat.proc3825170.chain_1147,blat.proc3825170.chain_1149	7
scaffold_18	spliced_intron	9259474	9259564	-	asmbl_20059,asmbl_20061	none	STRG.21569.1,STRG.21569.2,Trinity_GG_12060_c0_g1_i1,blat.proc3825158.chain_2485,blat.proc3825158.chain_2488	5	STRG.21569.3	1
scaffold_17	retained_intron	9428864	9428984	+	asmbl_19080	none	Trinity_GG_28576_c0_g1_i1,blat.proc3825174.chain_1427	2	STRG.20564.1,blat.proc3825174.chain_1428	2
scaffold_8	spliced_intron	13132405	13133093	-	asmbl_52267	none	blat.proc3825152.chain_2749	1	STRG.10488.2,blat.proc3825152.chain_2750,blat.proc3825152.chain_2751	3
scaffold_11	alt_donor	5502118	5502119	-	asmbl_6665	none	STRG.13620.1,blat.proc3825154.chain_2128	2	blat.proc3825154.chain_2130	1
scaffold_7	alt_donor	12082936	12082937	+	asmbl_50220	none	STRG.9316.3	1	STRG.9316.1,STRG.9316.2,STRG.9316.4,blat.proc3825168.chain_1845	4
scaffold_18	alt_donor	2820919	2820920	+	asmbl_20421,asmbl_20422	none	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2052,blat.proc3825174.chain_2056	4	blat.proc3825174.chain_2047	1
scaffold_6	skipped_exon	2743934	2744894	-	asmbl_48157	none	STRG.7271.1,Trinity_GG_4023_c0_g1_i1	2	STRG.7271.2,blat.proc3825150.chain_3317	2
scaffold_23	starts_in_intron	4100309	4100309	-	asmbl_30829	none	STRG.25826.3,blat.proc3825160.chain_3032	2	blat.proc3825160.chain_3029,blat.proc3825160.chain_3031	2
scaffold_7	starts_in_intron	7025290	7025290	+	asmbl_49889	none	Trinity_GG_22251_c0_g1_i1,blat.proc3825168.chain_1437	2	STRG.8959.1,Trinity_GG_22251_c0_g1_i2,blat.proc3825168.chain_1436	3
scaffold_13	retained_intron	2571028	2571173	+	asmbl_10623,asmbl_10626	none	STRG.15563.1,STRG.15563.2,Trinity_GG_25871_c0_g1_i4,blat.proc3825172.chain_326	4	STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_323,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_327	8
scaffold_58	retained_intron	22910	23017	+	asmbl_46608	none	STRG.30082.1,Trinity_GG_33943_c0_g1_i1,Trinity_GG_33963_c0_g1_i1,blat.proc3825178.chain_3172,blat.proc3825178.chain_3208	5	STRG.30082.2	1
scaffold_26	retained_intron	9083573	9083738	-	asmbl_35765	none	STRG.28473.1,blat.proc3825162.chain_1682	2	STRG.28473.3	1
scaffold_15	spliced_intron	15906565	15906998	-	asmbl_14807,asmbl_14810,asmbl_14811	none	STRG.18975.1,blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_64	4	blat.proc3825158.chain_65,blat.proc3825158.chain_67	2
scaffold_26	alt_acceptor	4470248	4470249	+	asmbl_34912	none	STRG.28157.1,blat.proc3825178.chain_1249	2	blat.proc3825178.chain_1247	1
scaffold_9	retained_intron	12831578	12831611	+	asmbl_54472	none	STRG.11607.2	1	STRG.11607.3	1
scaffold_6	starts_in_intron	18835052	18835052	+	asmbl_47852,asmbl_47859,asmbl_47860	none	STRG.8556.4,STRG.8556.5,STRG.8556.6,Trinity_GG_21987_c0_g1_i5,blat.proc3825168.chain_959	5	STRG.8556.1,STRG.8556.2,STRG.8556.3,blat.proc3825168.chain_960,blat.proc3825168.chain_961,blat.proc3825168.chain_962,blat.proc3825168.chain_963	7
scaffold_26	alt_acceptor	5945002	5945003	-	asmbl_35652	none	STRG.28306.2,Trinity_GG_15823_c1_g1_i1,blat.proc3825162.chain_1511	3	STRG.28306.3	1
scaffold_9	starts_in_intron	11796219	11796219	-	asmbl_55307	none	Trinity_GG_6326_c1_g1_i1,blat.proc3825152.chain_3687	2	STRG.11496.1,STRG.11496.2,blat.proc3825152.chain_3683,blat.proc3825152.chain_3684,blat.proc3825152.chain_3685	5
scaffold_25	starts_in_intron	7339241	7339241	+	asmbl_33669	none	blat.proc3825178.chain_655	1	STRG.27588.1,STRG.27588.2,STRG.27588.3,STRG.27588.4,Trinity_GG_32501_c0_g1_i3,Trinity_GG_32501_c0_g1_i6,blat.proc3825178.chain_656,blat.proc3825178.chain_657,blat.proc3825178.chain_659	9
scaffold_8	spliced_intron	5968674	5968800	+	asmbl_52917	none	STRG.10007.1,blat.proc3825168.chain_2579	2	blat.proc3825168.chain_2578	1
scaffold_13	spliced_intron	394206	394756	-	asmbl_9342,asmbl_9344,asmbl_9347,asmbl_9352,asmbl_9353,asmbl_9354	none	STRG.15444.1,STRG.15444.3,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_352,blat.proc3825156.chain_355,blat.proc3825156.chain_364	9	Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_353,blat.proc3825156.chain_359,blat.proc3825156.chain_366	6
scaffold_26	alt_acceptor	1322127	1322128	-	asmbl_35401	none	STRG.27913.3	1	blat.proc3825162.chain_1237,blat.proc3825162.chain_1239	2
scaffold_14	retained_intron	5596465	5596629	+	asmbl_12028,asmbl_12030,asmbl_12032	none	STRG.17042.2,Trinity_GG_26703_c1_g1_i3,blat.proc3825172.chain_1826	3	STRG.17042.1,blat.proc3825172.chain_1829	2
scaffold_3	retained_intron	9516758	9517928	+	asmbl_40225,asmbl_40228,asmbl_40229	none	STRG.3436.2,Trinity_GG_19245_c0_g1_i2,blat.proc3825164.chain_3674,blat.proc3825164.chain_3677	4	STRG.3436.1,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3676,blat.proc3825164.chain_3678	5
scaffold_23	retained_exon	9330149	9330175	+	asmbl_31791	none	STRG.26165.1	1	STRG.26165.2	1
scaffold_11	spliced_intron	8601859	8601985	+	asmbl_5806,asmbl_5809,asmbl_5811,asmbl_5813	none	STRG.13876.1,STRG.13876.3,Trinity_GG_24974_c0_g1_i3,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2447,blat.proc3825170.chain_2448,blat.proc3825170.chain_2449	7	Trinity_GG_24974_c0_g1_i2,blat.proc3825170.chain_2446	2
scaffold_20	alternate_exon	6976338	6976493	+	asmbl_26692	none	STRG.23262.3	1	STRG.23262.1,STRG.23262.2,blat.proc3825176.chain_445,blat.proc3825176.chain_446	4
scaffold_15	retained_intron	15857347	15857505	+	asmbl_15824,asmbl_15826	none	Trinity_GG_27688_c0_g1_i10,blat.proc3825172.chain_3573,blat.proc3825172.chain_3578	3	STRG.18973.1,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i5,blat.proc3825172.chain_3568,blat.proc3825172.chain_3576,blat.proc3825172.chain_3577	6
scaffold_2	starts_in_intron	13896898	13896898	-	asmbl_23532	none	blat.proc3825148.chain_2388	1	STRG.2384.1,STRG.2384.2,blat.proc3825148.chain_2389,blat.proc3825148.chain_2392	4
scaffold_16	ends_in_intron	6195351	6195351	+	asmbl_16295	none	blat.proc3825174.chain_259	1	STRG.19370.1,STRG.19370.2,blat.proc3825174.chain_257,blat.proc3825174.chain_258,blat.proc3825174.chain_260,blat.proc3825174.chain_261	6
scaffold_24	retained_intron	3700697	3701118	+	asmbl_32158	none	blat.proc3825176.chain_3489,blat.proc3825176.chain_3492	2	STRG.26557.1,blat.proc3825176.chain_3490,blat.proc3825176.chain_3491	3
scaffold_15	alt_acceptor	14889589	14889590	+	asmbl_15706,asmbl_15707	none	STRG.18902.1,STRG.18902.2,Trinity_GG_27623_c0_g1_i3,blat.proc3825172.chain_3432,blat.proc3825172.chain_3435	5	blat.proc3825172.chain_3434	1
scaffold_19	ends_in_intron	12487093	12487093	-	asmbl_22501	none	Trinity_GG_12561_c0_g2_i1,blat.proc3825158.chain_3348	2	STRG.22589.1,blat.proc3825158.chain_3347	2
scaffold_11	ends_in_intron	9079106	9079106	+	asmbl_5858	none	Trinity_GG_24995_c0_g1_i1,blat.proc3825170.chain_2491	2	STRG.13933.1,Trinity_GG_24995_c0_g1_i2,blat.proc3825170.chain_2490	3
scaffold_4	retained_intron	18282392	18282451	+	asmbl_42085	none	Trinity_GG_20284_c0_g1_i1,blat.proc3825166.chain_1717,blat.proc3825166.chain_1718	3	STRG.5424.1	1
scaffold_2	skipped_exon	3898325	3899361	+	asmbl_24317,asmbl_24320	none	STRG.1826.1,blat.proc3825164.chain_1999,blat.proc3825164.chain_2004	3	STRG.1826.2,blat.proc3825164.chain_2000	2
scaffold_3	alternate_exon	2665627	2665703	+	asmbl_39913	none	STRG.3041.4,blat.proc3825164.chain_3261	2	STRG.3041.1,STRG.3041.2,STRG.3041.3,blat.proc3825164.chain_3260,blat.proc3825164.chain_3262,blat.proc3825164.chain_3263,blat.proc3825164.chain_3264	7
scaffold_13	alt_donor	12243837	12243838	-	asmbl_10124	none	STRG.16353.2,blat.proc3825156.chain_1217	2	STRG.16353.1,STRG.16353.3,blat.proc3825156.chain_1216,blat.proc3825156.chain_1218	4
scaffold_27	alternate_exon	6705955	6705988	+	asmbl_36403	none	STRG.29044.1	1	STRG.29044.2,blat.proc3825178.chain_2253	2
scaffold_20	starts_in_intron	11682174	11682174	-	asmbl_26184	none	blat.proc3825160.chain_766	1	STRG.23680.1,STRG.23680.2,blat.proc3825160.chain_764	3
scaffold_11	spliced_intron	3486134	3486289	+	asmbl_5435	none	STRG.13477.1	1	Trinity_GG_24723_c1_g1_i2,blat.proc3825170.chain_2024,blat.proc3825170.chain_2025	3
scaffold_13	alt_acceptor	12253768	12253769	+	asmbl_11348,asmbl_11349	none	STRG.16359.1,Trinity_GG_26285_c0_g1_i1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1114,blat.proc3825172.chain_1115	5	STRG.16359.3,blat.proc3825172.chain_1113	2
scaffold_1	retained_intron	14320893	14321243	+	asmbl_2383	none	blat.proc3825164.chain_1226	1	STRG.1027.2,blat.proc3825164.chain_1224	2
scaffold_1	retained_intron	16800305	16801968	+	asmbl_2506	none	Trinity_GG_18011_c0_g1_i2,Trinity_GG_18011_c0_g1_i4	2	STRG.1181.1	1
scaffold_1	spliced_intron	12683507	12683637	+	asmbl_2245,asmbl_2246	none	STRG.892.1,blat.proc3825164.chain_1038,blat.proc3825164.chain_1039,blat.proc3825164.chain_1040	4	blat.proc3825164.chain_1037	1
scaffold_26	alt_acceptor	4327632	4327633	-	asmbl_35543	none	STRG.28149.5	1	STRG.28149.1,STRG.28149.2,STRG.28149.3,STRG.28149.4	4
scaffold_5	alt_acceptor	8538846	8538847	-	asmbl_44212,asmbl_44214,asmbl_44216	none	STRG.6198.1,STRG.6198.4,blat.proc3825150.chain_2419,blat.proc3825150.chain_2421,blat.proc3825150.chain_2423	5	STRG.6198.3,STRG.6198.5,blat.proc3825150.chain_2418	3
scaffold_16	ends_in_intron	311611	311611	-	asmbl_16851,asmbl_16852	none	STRG.19022.3,STRG.19022.4,blat.proc3825158.chain_157	3	STRG.19022.1,STRG.19022.2	2
scaffold_5	skipped_exon	823617	825278	+	asmbl_45102	none	STRG.5638.1	1	STRG.5638.2	1
scaffold_13	starts_in_intron	2949839	2949839	-	asmbl_9495	none	Trinity_GG_8750_c0_g1_i1,blat.proc3825156.chain_485	2	STRG.15594.1,blat.proc3825156.chain_484	2
scaffold_12	spliced_intron	4788054	4789011	-	asmbl_8450,asmbl_8457	none	STRG.14660.4,blat.proc3825154.chain_3147,blat.proc3825154.chain_3153	3	STRG.14660.3,STRG.14660.6,Trinity_GG_8171_c2_g1_i1,blat.proc3825154.chain_3155	4
scaffold_8	alt_donor	18089772	18089773	+	asmbl_53526	none	blat.proc3825168.chain_3141	1	STRG.10711.2,blat.proc3825168.chain_3140	2
scaffold_10	retained_exon	1491217	1491397	-	asmbl_4064	none	STRG.12025.2,blat.proc3825154.chain_512	2	STRG.12025.1,STRG.12025.3,blat.proc3825154.chain_513	3
scaffold_10	alt_acceptor	979069	979070	-	asmbl_4024,asmbl_4025	none	STRG.11983.2,STRG.11983.3,blat.proc3825154.chain_497	3	STRG.11983.1	1
scaffold_16	retained_exon	10977144	10977215	-	asmbl_17320	none	STRG.19645.1,blat.proc3825158.chain_660	2	blat.proc3825158.chain_661	1
scaffold_7	retained_intron	271299	271404	+	asmbl_49542,asmbl_49543,asmbl_49545	none	STRG.8598.1,STRG.8598.3,STRG.8598.6,blat.proc3825168.chain_1053	4	STRG.8598.4	1
scaffold_14	retained_intron	11792025	11792322	-	asmbl_13535	none	STRG.17533.1,Trinity_GG_9837_c1_g1_i1,blat.proc3825156.chain_2356	3	STRG.17533.2,blat.proc3825156.chain_2355	2
scaffold_15	spliced_intron	2557700	2557737	-	asmbl_14019	none	STRG.18039.2	1	STRG.18039.1	1
scaffold_17	starts_in_intron	8640704	8640704	-	asmbl_18109	none	blat.proc3825158.chain_1521	1	STRG.20482.1,blat.proc3825158.chain_1523	2
scaffold_26	alternate_exon	8587672	8588953	-	asmbl_35734	none	STRG.28448.1,Trinity_GG_15890_c0_g1_i1,blat.proc3825162.chain_1628	3	STRG.28448.2	1
scaffold_21	spliced_intron	7999512	7999684	-	asmbl_27879,asmbl_27880,asmbl_27881,asmbl_27882	none	STRG.24336.1,STRG.24336.2,STRG.24336.3,STRG.24336.4,blat.proc3825160.chain_1499,blat.proc3825160.chain_1500,blat.proc3825160.chain_1501,blat.proc3825160.chain_1502	8	blat.proc3825160.chain_1503	1
scaffold_14	starts_in_intron	15347049	15347049	-	asmbl_13713	none	blat.proc3825156.chain_2606	1	STRG.17765.1,STRG.17765.2,STRG.17765.3,Trinity_GG_9998_c0_g1_i4,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2605,blat.proc3825156.chain_2607,blat.proc3825156.chain_2608,blat.proc3825156.chain_2610	9
scaffold_5	alternate_exon	16291664	16291692	+	asmbl_46079	none	blat.proc3825166.chain_3001	1	STRG.6827.2,STRG.6827.3,Trinity_GG_21041_c0_g1_i1,blat.proc3825166.chain_3002	4
scaffold_23	alt_donor	8206127	8206128	+	asmbl_31763,asmbl_31766	none	STRG.26129.1,blat.proc3825176.chain_3002,blat.proc3825176.chain_3004	3	STRG.26129.2,blat.proc3825176.chain_3003	2
scaffold_17	spliced_intron	8044838	8044930	-	asmbl_18070	none	STRG.20425.2,blat.proc3825158.chain_1491	2	STRG.20425.1,Trinity_GG_11504_c0_g1_i3,blat.proc3825158.chain_1489,blat.proc3825158.chain_1490	4
scaffold_23	alt_acceptor	7046371	7046372	-	asmbl_31012	none	STRG.26031.1,blat.proc3825160.chain_3127	2	blat.proc3825160.chain_3128	1
scaffold_7	skipped_exon	15598541	15599723	+	asmbl_50450,asmbl_50451	none	blat.proc3825168.chain_2058,blat.proc3825168.chain_2059	2	blat.proc3825168.chain_2060	1
scaffold_6	spliced_intron	1750960	1751447	-	asmbl_48122	none	STRG.7232.7	1	STRG.7232.3,STRG.7232.6,blat.proc3825150.chain_3308,blat.proc3825150.chain_3309,blat.proc3825150.chain_3314	5
scaffold_25	alt_acceptor	7735299	7735300	+	asmbl_33676	none	STRG.27598.1,blat.proc3825178.chain_679	2	STRG.27598.2	1
scaffold_5	alt_acceptor	7320424	7320425	+	asmbl_45493	none	Trinity_GG_20663_c0_g2_i1	1	STRG.6129.2	1
scaffold_3	alternate_exon	14353755	14353827	-	asmbl_39365	none	STRG.3782.2,Trinity_GG_2079_c0_g1_i1,blat.proc3825148.chain_3674	3	STRG.3782.1,blat.proc3825148.chain_3675	2
scaffold_28	starts_in_intron	3242581	3242581	+	asmbl_37460	none	STRG.29544.2,blat.proc3825178.chain_2664	2	STRG.29544.1	1
scaffold_7	retained_intron	12649977	12650578	-	asmbl_51260,asmbl_51261	none	STRG.9385.2,blat.proc3825152.chain_1732	2	STRG.9385.1,blat.proc3825152.chain_1733	2
scaffold_8	starts_in_intron	10864907	10864907	-	asmbl_52121,asmbl_52125	none	STRG.10312.1,blat.proc3825152.chain_2588	2	STRG.10312.2,STRG.10312.3	2
scaffold_1	spliced_intron	20741340	20741546	-	asmbl_1200,asmbl_1202,asmbl_1203	none	STRG.1420.1,blat.proc3825148.chain_1416	2	blat.proc3825148.chain_1415	1
scaffold_1	spliced_intron	14426870	14427019	-	asmbl_921,asmbl_922,asmbl_923,asmbl_924	none	STRG.1045.1,STRG.1045.2,STRG.1045.3,STRG.1045.4,blat.proc3825148.chain_1046,blat.proc3825148.chain_1047,blat.proc3825148.chain_1049,blat.proc3825148.chain_1050	8	Trinity_GG_551_c0_g1_i7,blat.proc3825148.chain_1048	2
scaffold_17	alt_acceptor	748751	748752	+	asmbl_18566	none	STRG.19925.1	1	STRG.19925.2	1
scaffold_14	spliced_intron	1111247	1111352	+	asmbl_11808	none	STRG.16770.3	1	STRG.16770.1,blat.proc3825172.chain_1532	2
scaffold_25	alt_donor	3550702	3550703	-	asmbl_34135	none	STRG.27301.2	1	STRG.27301.1,blat.proc3825162.chain_667	2
scaffold_24	spliced_intron	10778708	10778819	-	asmbl_33218,asmbl_33219,asmbl_33220,asmbl_33221	none	STRG.27043.1,blat.proc3825162.chain_367,blat.proc3825162.chain_368,blat.proc3825162.chain_369,blat.proc3825162.chain_370	5	blat.proc3825162.chain_371	1
scaffold_11	starts_in_intron	10822189	10822189	+	asmbl_5951	none	Trinity_GG_25058_c0_g1_i2,blat.proc3825170.chain_2597	2	STRG.14056.1,blat.proc3825170.chain_2598	2
scaffold_17	ends_in_intron	12369938	12369938	-	asmbl_18324	none	Trinity_GG_11637_c1_g2_i1	1	STRG.20776.1,STRG.20776.3,blat.proc3825158.chain_1711	3
scaffold_12	starts_in_intron	3330723	3330723	+	asmbl_7548	none	Trinity_GG_25356_c0_g1_i4,blat.proc3825170.chain_3111	2	STRG.14555.2,STRG.14555.4,Trinity_GG_25356_c0_g1_i2,blat.proc3825170.chain_3110	4
scaffold_21	retained_intron	10469247	10469271	+	asmbl_28872	none	STRG.24510.1	1	STRG.24510.2	1
scaffold_15	starts_in_intron	670516	670516	-	asmbl_13940	none	STRG.17932.2,blat.proc3825156.chain_2723	2	STRG.17932.1,blat.proc3825156.chain_2721,blat.proc3825156.chain_2722	3
scaffold_14	retained_intron	15468155	15468287	+	asmbl_12599	none	STRG.17780.1	1	STRG.17780.2	1
scaffold_17	ends_in_intron	3941870	3941870	+	asmbl_18748	none	Trinity_GG_28312_c0_g1_i2,blat.proc3825174.chain_961	2	STRG.20147.1,Trinity_GG_28312_c0_g1_i1,blat.proc3825174.chain_960	3
scaffold_11	skipped_exon	9122914	9123614	+	asmbl_5869	none	STRG.13952.2,blat.proc3825170.chain_2530	2	STRG.13952.1,blat.proc3825170.chain_2529,blat.proc3825170.chain_2532	3
scaffold_7	skipped_exon	15316590	15317879	-	asmbl_51370	none	STRG.9548.3	1	STRG.9548.2,Trinity_GG_5358_c0_g1_i1,blat.proc3825152.chain_1893,blat.proc3825152.chain_1895	4
scaffold_15	spliced_intron	2990755	2990835	-	asmbl_14068	none	STRG.18083.2,blat.proc3825156.chain_2907	2	STRG.18083.3,blat.proc3825156.chain_2908	2
scaffold_11	alt_donor	4745191	4745192	-	asmbl_6622,asmbl_6624,asmbl_6626,asmbl_6627	none	STRG.13567.2,blat.proc3825154.chain_2162,blat.proc3825154.chain_2163,blat.proc3825154.chain_2166,blat.proc3825154.chain_2167	5	STRG.13567.1,blat.proc3825154.chain_2165	2
scaffold_1	starts_in_intron	5606797	5606797	-	asmbl_277	none	blat.proc3825148.chain_266	1	STRG.348.1,Trinity_GG_152_c0_g1_i2,Trinity_GG_152_c0_g1_i3,blat.proc3825148.chain_265,blat.proc3825148.chain_267	5
scaffold_17	alt_acceptor	5137331	5137332	-	asmbl_17921	none	STRG.20247.2,blat.proc3825158.chain_1307	2	STRG.20247.1,STRG.20247.3,blat.proc3825158.chain_1309,blat.proc3825158.chain_1310	4
scaffold_2	retained_intron	888423	888576	+	asmbl_24127,asmbl_24129,asmbl_24130,asmbl_24131	none	Trinity_GG_18210_c1_g1_i8,blat.proc3825164.chain_1711,blat.proc3825164.chain_1712,blat.proc3825164.chain_1714,blat.proc3825164.chain_1715,blat.proc3825164.chain_1716	6	STRG.1565.1,STRG.1565.5	2
scaffold_13	ends_in_intron	8116782	8116782	+	asmbl_11107	none	Trinity_GG_26150_c0_g1_i2,blat.proc3825172.chain_848	2	STRG.16092.1,STRG.16092.2,Trinity_GG_26150_c0_g1_i1,Trinity_GG_26150_c0_g1_i3,blat.proc3825172.chain_849,blat.proc3825172.chain_850	6
scaffold_6	ends_in_intron	16381365	16381365	-	asmbl_49127	none	Trinity_GG_4767_c0_g1_i2,blat.proc3825152.chain_799	2	STRG.8367.1,Trinity_GG_4767_c0_g1_i1,blat.proc3825152.chain_800	3
scaffold_1	alt_donor	3641920	3641921	+	asmbl_1620	none	STRG.232.1,blat.proc3825164.chain_343	2	STRG.232.2	1
scaffold_1	spliced_intron	5741078	5741175	+	asmbl_1775,asmbl_1776,asmbl_1779,asmbl_1780,asmbl_1781	none	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528	5	Trinity_GG_17568_c0_g1_i8,blat.proc3825164.chain_527	2
scaffold_6	alt_acceptor	17522226	17522227	+	asmbl_47761	none	STRG.8455.2,Trinity_GG_21946_c1_g1_i1,Trinity_GG_21946_c1_g1_i4,blat.proc3825168.chain_893,blat.proc3825168.chain_894	5	STRG.8455.3	1
scaffold_24	alt_donor	5371781	5371782	-	asmbl_32903	none	STRG.26626.1,blat.proc3825162.chain_10	2	blat.proc3825162.chain_11	1
scaffold_18	alt_acceptor	1686752	1686753	-	asmbl_19636	none	STRG.21055.2,blat.proc3825158.chain_1935	2	STRG.21055.1,blat.proc3825158.chain_1936	2
scaffold_17	alt_donor	13610707	13610708	+	asmbl_19338	none	STRG.20835.1	1	STRG.20835.2	1
scaffold_16	alternate_exon	11773990	11774028	+	asmbl_16601	none	STRG.19699.1,Trinity_GG_28110_c0_g1_i2,blat.proc3825174.chain_626	3	Trinity_GG_28110_c0_g1_i1,blat.proc3825174.chain_625	2
scaffold_300	alternate_exon	987	1706	+	asmbl_40902,asmbl_40903	none	STRG.30272.1,STRG.30272.3,blat.proc3825178.chain_3363,blat.proc3825178.chain_3365	4	blat.proc3825178.chain_3364	1
scaffold_3	alt_donor	10304221	10304222	+	asmbl_40261,asmbl_40262	none	STRG.3476.1,STRG.3476.2,Trinity_GG_19250_c1_g1_i1,blat.proc3825164.chain_3702	4	Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700	2
scaffold_16	retained_intron	7910151	7910238	+	asmbl_16361,asmbl_16362	none	Trinity_GG_27913_c0_g1_i2,blat.proc3825174.chain_281,blat.proc3825174.chain_283	3	STRG.19445.1,Trinity_GG_27913_c0_g1_i1,blat.proc3825174.chain_282	3
scaffold_18	alt_acceptor	8155778	8155779	-	asmbl_19998	none	STRG.21504.2,blat.proc3825158.chain_2427	2	STRG.21504.1,blat.proc3825158.chain_2425	2
scaffold_3	retained_exon	19407474	19407526	-	asmbl_39647,asmbl_39648,asmbl_39652	none	STRG.4086.1,STRG.4086.3,STRG.4086.4,blat.proc3825150.chain_250,blat.proc3825150.chain_253	5	STRG.4086.5,blat.proc3825150.chain_252	2
scaffold_19	alt_acceptor	6743768	6743769	+	asmbl_21439	none	STRG.22194.1,Trinity_GG_29562_c0_g1_i1,blat.proc3825174.chain_3186	3	STRG.22194.2,Trinity_GG_29562_c0_g1_i2,blat.proc3825174.chain_3187	3
scaffold_17	retained_intron	7038519	7038718	-	asmbl_18026	none	blat.proc3825158.chain_1346	1	STRG.20368.1,STRG.20368.2,blat.proc3825158.chain_1345	3
scaffold_12	starts_in_intron	9036376	9036376	+	asmbl_7849	none	STRG.14916.3	1	STRG.14916.1,STRG.14916.2,blat.proc3825170.chain_3492	3
scaffold_9	starts_in_intron	14040900	14040900	+	asmbl_54520	none	Trinity_GG_23791_c0_g1_i5,blat.proc3825170.chain_426	2	STRG.11665.1,STRG.11665.2,STRG.11665.3,Trinity_GG_23791_c0_g1_i3,Trinity_GG_23791_c0_g1_i4,blat.proc3825170.chain_423,blat.proc3825170.chain_424	7
scaffold_2	retained_intron	13397950	13398180	+	asmbl_24841,asmbl_24845	none	STRG.2359.1,Trinity_GG_18642_c0_g1_i2,blat.proc3825164.chain_2562,blat.proc3825164.chain_2564	4	STRG.2359.2,blat.proc3825164.chain_2560,blat.proc3825164.chain_2563	3
scaffold_4	starts_in_intron	19215548	19215548	+	asmbl_42130	none	blat.proc3825166.chain_1791	1	STRG.5507.1	1
scaffold_16	starts_in_intron	6204600	6204600	-	asmbl_17148	none	blat.proc3825158.chain_532	1	STRG.19372.1	1
scaffold_14	spliced_intron	3160506	3160911	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11918,asmbl_11921,asmbl_11922,asmbl_11923,asmbl_11924	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1609,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	15	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605	2
scaffold_5	spliced_intron	188824	188862	+	asmbl_45090	none	STRG.5587.5	1	STRG.5587.1,STRG.5587.2,STRG.5587.3,STRG.5587.4,Trinity_GG_20359_c0_g1_i2,blat.proc3825166.chain_1844	6
scaffold_94	alt_acceptor	8239	8240	-	asmbl_55838	none	STRG.30135.2	1	STRG.30135.1,blat.proc3825162.chain_3306	2
scaffold_3	ends_in_intron	14319586	14319586	-	asmbl_39357	none	Trinity_GG_2048_c1_g1_i4,blat.proc3825148.chain_3617	2	STRG.3772.1,STRG.3772.2,Trinity_GG_2048_c1_g1_i2,blat.proc3825148.chain_3616	4
scaffold_20	spliced_intron	253640	253910	-	asmbl_25476	none	STRG.22719.2	1	STRG.22719.1	1
scaffold_1	retained_intron	14320880	14321243	+	asmbl_2383	none	blat.proc3825164.chain_1226	1	blat.proc3825164.chain_1225	1
scaffold_27	skipped_exon	3091909	3093432	-	asmbl_36887	none	STRG.28796.5,blat.proc3825162.chain_2065	2	STRG.28796.6	1
scaffold_6	ends_in_intron	5435373	5435373	+	asmbl_46948	none	blat.proc3825166.chain_3656	1	STRG.7513.1,STRG.7513.2,STRG.7513.3,blat.proc3825166.chain_3653,blat.proc3825166.chain_3655	5
scaffold_17	alternate_exon	9008072	9009348	+	asmbl_19054,asmbl_19056	none	STRG.20525.2,STRG.20525.3,blat.proc3825174.chain_1321	3	STRG.20525.1,blat.proc3825174.chain_1320,blat.proc3825174.chain_1322	3
scaffold_15	alternate_exon	12641490	12641618	-	asmbl_14596	none	STRG.18720.2	1	STRG.18720.1,blat.proc3825156.chain_3565	2
scaffold_11	retained_intron	13256356	13256573	+	asmbl_6043	none	Trinity_GG_25137_c0_g1_i5,blat.proc3825170.chain_2731	2	STRG.14199.1,STRG.14199.2,blat.proc3825170.chain_2729,blat.proc3825170.chain_2732	4
scaffold_21	starts_in_intron	2271509	2271509	+	asmbl_28373	none	Trinity_GG_30490_c0_g1_i2,blat.proc3825176.chain_1001	2	STRG.23848.1,STRG.23848.2,blat.proc3825176.chain_1002	3
scaffold_21	ends_in_intron	10940191	10940191	+	asmbl_28899	none	Trinity_GG_30889_c1_g1_i1	1	STRG.24570.1,blat.proc3825176.chain_1695	2
scaffold_12	alternate_exon	5637494	5638629	-	asmbl_8516	none	STRG.14715.2,blat.proc3825154.chain_3251	2	Trinity_GG_8225_c0_g1_i1,blat.proc3825154.chain_3253	2
scaffold_12	alternate_exon	13393738	13393765	-	asmbl_8944	none	STRG.15219.2	1	STRG.15219.3,STRG.15219.5,blat.proc3825156.chain_5,blat.proc3825156.chain_8	4
scaffold_15	retained_intron	4753209	4753331	+	asmbl_15170	none	Trinity_GG_27290_c0_g1_i1,blat.proc3825172.chain_2870	2	STRG.18193.1,STRG.18193.2,blat.proc3825172.chain_2871,blat.proc3825172.chain_2872	4
scaffold_6	spliced_intron	15087115	15087248	-	asmbl_49046,asmbl_49050	none	STRG.8272.1,Trinity_GG_4678_c0_g1_i1,blat.proc3825152.chain_664,blat.proc3825152.chain_665	4	Trinity_GG_4678_c0_g1_i4,blat.proc3825152.chain_663	2
scaffold_15	alternate_exon	4117266	4118011	-	asmbl_14122,asmbl_14123,asmbl_14124,asmbl_14127	none	STRG.18155.1,STRG.18155.2,STRG.18155.3,STRG.18155.4,Trinity_GG_10180_c0_g1_i1,blat.proc3825156.chain_2938,blat.proc3825156.chain_2939,blat.proc3825156.chain_2940	8	Trinity_GG_10180_c0_g2_i1,blat.proc3825156.chain_2941	2
scaffold_2	alt_donor	16420805	16420806	-	asmbl_23688,asmbl_23690,asmbl_23692	none	STRG.2587.1,STRG.2587.2,blat.proc3825148.chain_2556,blat.proc3825148.chain_2558	4	STRG.2587.3,blat.proc3825148.chain_2559	2
scaffold_4	alt_acceptor	17162550	17162551	+	asmbl_42043	none	STRG.5318.2	1	STRG.5318.1	1
scaffold_17	starts_in_intron	11050392	11050392	+	asmbl_19200	none	Trinity_GG_28632_c0_g1_i2,Trinity_GG_28632_c0_g1_i3,blat.proc3825174.chain_1543,blat.proc3825174.chain_1545	4	STRG.20662.1,STRG.20662.2,blat.proc3825174.chain_1542,blat.proc3825174.chain_1544	4
scaffold_6	ends_in_intron	3343793	3343793	+	asmbl_46835	none	blat.proc3825166.chain_3436	1	STRG.7343.1,blat.proc3825166.chain_3435	2
scaffold_20	alt_acceptor	11503141	11503142	+	asmbl_27067	none	STRG.23655.2	1	STRG.23655.1,Trinity_GG_30406_c0_g1_i2,blat.proc3825176.chain_851	3
scaffold_28	spliced_intron	5014513	5014754	+	asmbl_37559	none	Trinity_GG_33747_c0_g1_i3,blat.proc3825178.chain_2831	2	Trinity_GG_33747_c0_g1_i1,blat.proc3825178.chain_2829	2
scaffold_11	alt_donor	1433379	1433380	-	asmbl_6432	none	STRG.13328.3	1	STRG.13328.1,STRG.13328.2,blat.proc3825154.chain_1912	3
scaffold_28	retained_intron	4839616	4841649	+	asmbl_37549	none	Trinity_GG_33746_c0_g1_i1,blat.proc3825178.chain_2826	2	STRG.29649.1,Trinity_GG_33746_c0_g1_i2,blat.proc3825178.chain_2827	3
scaffold_10	spliced_intron	3714042	3714121	+	asmbl_3063	none	STRG.12198.2	1	STRG.12198.1,blat.proc3825170.chain_905,blat.proc3825170.chain_906	3
scaffold_11	alt_donor	1862042	1862043	-	asmbl_6453	none	STRG.13346.1,blat.proc3825154.chain_1920	2	STRG.13346.2,blat.proc3825154.chain_1921	2
scaffold_3	ends_in_intron	12009531	12009531	+	asmbl_40391	none	blat.proc3825166.chain_117	1	STRG.3627.1,blat.proc3825166.chain_118	2
scaffold_6	skipped_exon	14116949	14117326	+	asmbl_47581	none	STRG.8177.2	1	STRG.8177.1	1
scaffold_5	alt_donor	5591152	5591153	+	asmbl_45349	none	STRG.5980.2,blat.proc3825166.chain_2114	2	STRG.5980.1,blat.proc3825166.chain_2113	2
scaffold_20	alt_donor	207447	207448	-	asmbl_25463	none	STRG.22702.2,blat.proc3825158.chain_3563	2	STRG.22702.1,blat.proc3825158.chain_3562	2
scaffold_6	spliced_intron	13573940	13574663	-	asmbl_48914,asmbl_48915,asmbl_48916,asmbl_48917	none	STRG.8098.2,STRG.8098.3,STRG.8098.4,Trinity_GG_4614_c2_g1_i3,Trinity_GG_4614_c2_g1_i4,blat.proc3825152.chain_538,blat.proc3825152.chain_539	7	STRG.8098.1,Trinity_GG_4614_c2_g1_i2,Trinity_GG_4614_c2_g1_i5,blat.proc3825152.chain_536,blat.proc3825152.chain_540	5
scaffold_4	skipped_exon	19679866	19680199	+	asmbl_42155	none	STRG.5559.3,Trinity_GG_20342_c0_g1_i2,blat.proc3825166.chain_1806	3	STRG.5559.1,STRG.5559.2,Trinity_GG_20342_c0_g1_i3,blat.proc3825166.chain_1807	4
scaffold_3	alt_donor	12577576	12577577	+	asmbl_40410	none	STRG.3649.1,blat.proc3825166.chain_171	2	blat.proc3825166.chain_170	1
scaffold_18	retained_exon	3916064	3916194	-	asmbl_19783	none	STRG.21203.4	1	STRG.21203.3	1
scaffold_9	alt_donor	12113441	12113442	+	asmbl_54409,asmbl_54411,asmbl_54414	none	STRG.11537.1,blat.proc3825170.chain_366,blat.proc3825170.chain_368,blat.proc3825170.chain_369	4	STRG.11537.3	1
scaffold_8	spliced_intron	16499327	16499685	-	asmbl_52403,asmbl_52404,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52419,asmbl_52421	none	STRG.10629.3,STRG.10629.4,blat.proc3825152.chain_2928,blat.proc3825152.chain_2932,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2941	7	STRG.10629.1,STRG.10629.2,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2939	5
scaffold_9	alternate_exon	12630499	12630561	+	asmbl_54446,asmbl_54449,asmbl_54450	none	STRG.11586.1,STRG.11586.2,blat.proc3825170.chain_404,blat.proc3825170.chain_406	4	STRG.11586.3,STRG.11586.4,STRG.11586.5,blat.proc3825170.chain_401,blat.proc3825170.chain_403,blat.proc3825170.chain_405	6
scaffold_1	retained_exon	20967252	20967429	+	asmbl_2664	none	STRG.1432.1,blat.proc3825164.chain_1580	2	STRG.1432.2	1
scaffold_54	spliced_intron	7823	8417	-	asmbl_46552	none	STRG.30066.1,blat.proc3825162.chain_3240	2	STRG.30066.2,Trinity_GG_16870_c1_g1_i1,blat.proc3825162.chain_3239,blat.proc3825162.chain_3241	4
scaffold_5	retained_intron	16937471	16937586	-	asmbl_44787	none	blat.proc3825150.chain_2994	1	STRG.6874.1,blat.proc3825150.chain_2993,blat.proc3825150.chain_2995,blat.proc3825150.chain_2996	4
scaffold_15	alt_acceptor	4230503	4230504	+	asmbl_15127,asmbl_15128,asmbl_15129,asmbl_15131,asmbl_15133,asmbl_15134	none	STRG.18172.1,STRG.18172.2,Trinity_GG_27280_c0_g1_i5,blat.proc3825172.chain_2837,blat.proc3825172.chain_2839,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842,blat.proc3825172.chain_2843	9	blat.proc3825172.chain_2838	1
scaffold_13	alternate_exon	6395125	6396105	+	asmbl_10924,asmbl_10930	none	STRG.15929.3,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	4	Trinity_GG_26055_c0_g1_i2,blat.proc3825172.chain_653	2
scaffold_7	retained_intron	16829914	16830413	-	asmbl_51421	none	Trinity_GG_5367_c0_g1_i2,blat.proc3825152.chain_1909	2	STRG.9594.1,blat.proc3825152.chain_1908	2
scaffold_5	retained_intron	2536271	2536536	+	asmbl_45172	none	STRG.5779.2,blat.proc3825166.chain_2004	2	STRG.5779.3,blat.proc3825166.chain_2002	2
scaffold_5	ends_in_intron	5055792	5055792	+	asmbl_45336	none	Trinity_GG_20581_c0_g1_i2,blat.proc3825166.chain_2196	2	STRG.5959.1,STRG.5959.2,STRG.5959.3,STRG.5959.4,Trinity_GG_20581_c0_g2_i1,blat.proc3825166.chain_2195,blat.proc3825166.chain_2197	7
scaffold_5	alt_acceptor	6190083	6190084	+	asmbl_45409	none	STRG.6033.1,blat.proc3825166.chain_2280	2	STRG.6033.2,blat.proc3825166.chain_2278	2
scaffold_27	ends_in_intron	1131896	1131896	-	asmbl_36746	none	blat.proc3825162.chain_1757	1	STRG.28614.1,blat.proc3825162.chain_1758	2
scaffold_1	retained_intron	14334145	14334239	-	asmbl_889	none	STRG.1032.3,blat.proc3825148.chain_1021	2	STRG.1032.1,STRG.1032.2,blat.proc3825148.chain_1020,blat.proc3825148.chain_1022	4
scaffold_16	retained_intron	6138194	6138347	-	asmbl_17144	none	STRG.19348.2,blat.proc3825158.chain_515	2	STRG.19348.1,blat.proc3825158.chain_514	2
scaffold_14	spliced_intron	15693864	15693986	-	asmbl_13740	none	STRG.17812.2	1	STRG.17812.1	1
scaffold_10	spliced_intron	4159649	4159782	-	asmbl_4269,asmbl_4271	none	STRG.12253.2,STRG.12253.3,blat.proc3825154.chain_811	3	blat.proc3825154.chain_810	1
scaffold_5	starts_in_intron	8540705	8540705	-	asmbl_44218	none	STRG.6198.5	1	STRG.6198.1,STRG.6198.3,STRG.6198.4,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419,blat.proc3825150.chain_2421,blat.proc3825150.chain_2422,blat.proc3825150.chain_2423	8
scaffold_11	alt_donor	7668430	7668431	-	asmbl_6798	none	STRG.13780.3	1	STRG.13780.1,STRG.13780.2,blat.proc3825154.chain_2375	3
scaffold_14	spliced_intron	399142	399371	+	asmbl_11753,asmbl_11754,asmbl_11755	none	STRG.16734.3,Trinity_GG_26526_c0_g1_i10,Trinity_GG_26526_c0_g1_i18,blat.proc3825172.chain_1507,blat.proc3825172.chain_1514	5	STRG.16734.5,STRG.16734.6	2
scaffold_11	starts_in_intron	16631056	16631056	-	asmbl_7234	none	blat.proc3825154.chain_2876	1	STRG.14349.1,blat.proc3825154.chain_2875	2
scaffold_11	alternate_exon	3852229	3852262	+	asmbl_5463	none	STRG.13502.2,Trinity_GG_24731_c0_g1_i2,blat.proc3825170.chain_2039	3	STRG.13502.1,Trinity_GG_24731_c0_g1_i3,blat.proc3825170.chain_2038	3
scaffold_2	spliced_intron	9295733	9295827	+	asmbl_24678	none	STRG.2170.1,blat.proc3825164.chain_2358	2	STRG.2170.2	1
scaffold_27	retained_intron	6702554	6703059	-	asmbl_37077	none	STRG.29041.1,blat.proc3825162.chain_2271	2	STRG.29041.2	1
scaffold_21	spliced_intron	5537847	5538423	-	asmbl_27675,asmbl_27676	none	STRG.24086.1,blat.proc3825160.chain_1275	2	STRG.24086.2,blat.proc3825160.chain_1271,blat.proc3825160.chain_1277	3
scaffold_19	alt_donor	1038171	1038172	+	asmbl_21228	none	STRG.21896.1,blat.proc3825174.chain_2871	2	STRG.21896.2,blat.proc3825174.chain_2870	2
scaffold_6	retained_intron	17524201	17525243	+	asmbl_47761,asmbl_47762,asmbl_47763	none	STRG.8455.1,STRG.8455.2,STRG.8455.3,Trinity_GG_21946_c0_g1_i2,Trinity_GG_21946_c1_g1_i4,blat.proc3825168.chain_894	6	STRG.8455.4,blat.proc3825168.chain_892	2
scaffold_13	retained_intron	356960	357391	+	asmbl_10478	none	Trinity_GG_25794_c0_g1_i2,blat.proc3825172.chain_153	2	STRG.15441.1,Trinity_GG_25794_c0_g1_i3,blat.proc3825172.chain_152,blat.proc3825172.chain_154	4
scaffold_18	retained_exon	205250	205340	+	asmbl_20272,asmbl_20278	none	STRG.20974.2,blat.proc3825174.chain_1918,blat.proc3825174.chain_1921	3	STRG.20974.1,STRG.20974.3,blat.proc3825174.chain_1917,blat.proc3825174.chain_1920	4
scaffold_1	spliced_intron	12453468	12453687	+	asmbl_2224,asmbl_2225	none	STRG.860.1,blat.proc3825164.chain_1032,blat.proc3825164.chain_1033	3	blat.proc3825164.chain_1034	1
scaffold_13	retained_intron	4457825	4458799	+	asmbl_10793	none	STRG.15770.2,Trinity_GG_25976_c0_g1_i2,Trinity_GG_25976_c0_g2_i2,blat.proc3825172.chain_507,blat.proc3825172.chain_508	5	STRG.15770.3,blat.proc3825172.chain_511	2
scaffold_14	skipped_exon	15584170	15586492	+	asmbl_12631	none	STRG.17811.7	1	STRG.17811.1	1
scaffold_14	alt_acceptor	11672280	11672281	+	asmbl_12399	none	STRG.17512.2	1	STRG.17512.1,blat.proc3825172.chain_2226	2
scaffold_10	alternate_exon	2671671	2671714	+	asmbl_2990	none	STRG.12089.1	1	STRG.12089.2,blat.proc3825170.chain_827	2
scaffold_22	skipped_exon	6130130	6131156	+	asmbl_30100,asmbl_30104	none	STRG.24968.7,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2124	3	STRG.24968.4,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120	3
scaffold_24	starts_in_intron	7174910	7174910	-	asmbl_33017	none	blat.proc3825162.chain_74	1	STRG.26767.1,STRG.26767.2	2
scaffold_14	retained_intron	399142	399238	+	asmbl_11749,asmbl_11751	none	STRG.16734.5,STRG.16734.6	2	STRG.16734.1,STRG.16734.2,STRG.16734.4,Trinity_GG_26526_c0_g1_i23,blat.proc3825172.chain_1504	5
scaffold_10	alt_acceptor	7276360	7276361	+	asmbl_3273,asmbl_3274	none	STRG.12540.4,blat.proc3825170.chain_1149	2	STRG.12540.3,blat.proc3825170.chain_1148	2
scaffold_17	spliced_intron	13957425	13957742	+	asmbl_19366	none	STRG.20871.1,Trinity_GG_28775_c0_g1_i1,Trinity_GG_28775_c0_g1_i3,blat.proc3825174.chain_1766,blat.proc3825174.chain_1767	5	Trinity_GG_28775_c0_g1_i2,blat.proc3825174.chain_1768	2
scaffold_22	retained_exon	4355993	4356031	+	asmbl_29984,asmbl_29986	none	STRG.24857.2,blat.proc3825176.chain_1962,blat.proc3825176.chain_1964	3	STRG.24857.1,blat.proc3825176.chain_1963	2
scaffold_9	retained_intron	12270251	12270362	+	asmbl_54424,asmbl_54425	none	blat.proc3825170.chain_371,blat.proc3825170.chain_373	2	STRG.11550.1,blat.proc3825170.chain_374	2
scaffold_13	alt_acceptor	7526174	7526175	-	asmbl_9896,asmbl_9898	none	STRG.16048.2,STRG.16048.3,Trinity_GG_9022_c0_g1_i3,Trinity_GG_9022_c0_g1_i4,blat.proc3825156.chain_945,blat.proc3825156.chain_947	6	STRG.16048.1,Trinity_GG_9022_c0_g1_i1,blat.proc3825156.chain_946	3
scaffold_7	retained_intron	13866490	13867075	-	asmbl_51319	none	STRG.9480.2,blat.proc3825152.chain_1823	2	STRG.9480.5	1
scaffold_25	skipped_exon	5053997	5054997	+	asmbl_33558	none	STRG.27435.2,blat.proc3825178.chain_507	2	STRG.27435.1,blat.proc3825178.chain_506	2
scaffold_2	spliced_intron	14556531	14556641	+	asmbl_24948,asmbl_24949,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960	none	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2661,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663	11	blat.proc3825164.chain_2665	1
scaffold_8	alt_acceptor	6115210	6115211	+	asmbl_52938	none	STRG.10015.1,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	3	STRG.10015.2,Trinity_GG_22863_c0_g1_i1,blat.proc3825168.chain_2540	3
scaffold_20	retained_intron	7206140	7206288	-	asmbl_25888	none	STRG.23288.2,blat.proc3825160.chain_346	2	STRG.23288.1,blat.proc3825160.chain_347	2
scaffold_17	alt_acceptor	1365687	1365688	+	asmbl_18606	none	STRG.19977.2	1	STRG.19977.1	1
scaffold_17	spliced_intron	3141752	3141861	-	asmbl_17801	none	STRG.20097.1,blat.proc3825158.chain_1116	2	STRG.20097.2,Trinity_GG_11267_c0_g1_i3	2
scaffold_24	spliced_intron	8121621	8121799	+	asmbl_32410,asmbl_32411,asmbl_32412	none	STRG.26862.1,STRG.26862.2,STRG.26862.3,blat.proc3825178.chain_51,blat.proc3825178.chain_52,blat.proc3825178.chain_53	6	blat.proc3825178.chain_50	1
scaffold_18	spliced_intron	852034	852150	-	asmbl_19604,asmbl_19606	none	STRG.21011.1,blat.proc3825158.chain_1959,blat.proc3825158.chain_1960	3	blat.proc3825158.chain_1958	1
scaffold_1	retained_exon	5137095	5137142	+	asmbl_1700	none	blat.proc3825164.chain_412	1	STRG.321.2,blat.proc3825164.chain_410	2
scaffold_5	spliced_intron	7770850	7770942	+	asmbl_45512	none	STRG.6159.2	1	STRG.6159.1	1
scaffold_2	retained_exon	14193683	14193693	-	asmbl_23569,asmbl_23570	none	blat.proc3825148.chain_2413,blat.proc3825148.chain_2414	2	STRG.2416.3	1
scaffold_23	retained_intron	4315991	4316097	+	asmbl_31496,asmbl_31501	none	blat.proc3825176.chain_2777,blat.proc3825176.chain_2778	2	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2780	4
scaffold_15	retained_exon	6884075	6884143	-	asmbl_14265,asmbl_14270	none	STRG.18301.2,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	3	STRG.18301.4,Trinity_GG_10293_c0_g1_i10,blat.proc3825156.chain_3154	3
scaffold_4	alt_acceptor	5230743	5230744	-	asmbl_42576	none	STRG.4416.3	1	STRG.4416.2,STRG.4416.4,blat.proc3825150.chain_648	3
scaffold_26	alt_acceptor	968624	968625	-	asmbl_35397	none	STRG.27894.2	1	STRG.27894.1,blat.proc3825162.chain_1220	2
scaffold_14	alt_acceptor	12624817	12624818	-	asmbl_13579,asmbl_13581,asmbl_13582,asmbl_13583,asmbl_13584	none	STRG.17582.2,STRG.17582.3,STRG.17582.4,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2424	7	STRG.17582.1,blat.proc3825156.chain_2422	2
scaffold_1	alternate_exon	17861749	17861791	-	asmbl_1066	none	STRG.1250.2	1	STRG.1250.1,blat.proc3825148.chain_1197	2
scaffold_26	alt_donor	1323198	1323199	-	asmbl_35400	none	STRG.27913.2	1	STRG.27913.1,STRG.27913.3	2
scaffold_5	retained_intron	18808969	18809061	+	asmbl_46289	none	STRG.7006.2	1	STRG.7006.1,blat.proc3825166.chain_3209	2
scaffold_14	retained_intron	8405603	8405746	-	asmbl_13307,asmbl_13310	none	STRG.17278.1,STRG.17278.3,blat.proc3825156.chain_2032	3	STRG.17278.2,STRG.17278.4	2
scaffold_28	alternate_exon	2267847	2268295	-	asmbl_38024,asmbl_38030	none	STRG.29401.2,blat.proc3825162.chain_2575,blat.proc3825162.chain_2579	3	blat.proc3825162.chain_2576	1
scaffold_1	ends_in_intron	3614607	3614607	-	asmbl_167	none	Trinity_GG_127_c0_g1_i2,blat.proc3825148.chain_225	2	STRG.228.1,blat.proc3825148.chain_227	2
scaffold_4	spliced_intron	17580414	17580979	+	asmbl_42061,asmbl_42064	none	STRG.5347.1,STRG.5347.2	2	STRG.5347.4	1
scaffold_14	starts_in_intron	3404699	3404699	+	asmbl_11944	none	Trinity_GG_26611_c0_g1_i1	1	STRG.16925.1	1
scaffold_15	alt_acceptor	2196875	2196876	+	asmbl_15052	none	STRG.18006.1	1	STRG.18006.2	1
scaffold_13	alt_donor	11755312	11755313	+	asmbl_11309	none	STRG.16317.2	1	STRG.16317.1	1
scaffold_13	alternate_exon	11379298	11382356	-	asmbl_10082,asmbl_10084,asmbl_10086,asmbl_10087,asmbl_10088,asmbl_10090	none	STRG.16301.1,STRG.16301.2,STRG.16301.3,STRG.16301.4,blat.proc3825156.chain_1169,blat.proc3825156.chain_1170,blat.proc3825156.chain_1172,blat.proc3825156.chain_1173,blat.proc3825156.chain_1174	9	STRG.16301.7,Trinity_GG_9138_c0_g2_i1,blat.proc3825156.chain_1175	3
scaffold_26	starts_in_intron	8732133	8732133	-	asmbl_35749	none	blat.proc3825162.chain_1680	1	STRG.28459.1,blat.proc3825162.chain_1679	2
scaffold_5	retained_exon	18262627	18262698	+	asmbl_46236,asmbl_46240	none	STRG.6968.2,blat.proc3825166.chain_3188,blat.proc3825166.chain_3191	3	STRG.6968.1,blat.proc3825166.chain_3184,blat.proc3825166.chain_3187,blat.proc3825166.chain_3190	4
scaffold_6	alt_acceptor	12976821	12976822	+	asmbl_47459	none	STRG.8057.3,blat.proc3825168.chain_537	2	STRG.8057.1,STRG.8057.2,blat.proc3825168.chain_536,blat.proc3825168.chain_538,blat.proc3825168.chain_539	5
scaffold_9	spliced_intron	3414002	3414140	-	asmbl_54902,asmbl_54905	none	STRG.10955.1,blat.proc3825152.chain_3205	2	blat.proc3825152.chain_3204,blat.proc3825152.chain_3206	2
scaffold_18	retained_intron	1899014	1899766	-	asmbl_19655,asmbl_19656,asmbl_19657,asmbl_19658,asmbl_19662	none	STRG.21081.3,STRG.21081.9,blat.proc3825158.chain_2010,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2018	6	STRG.21081.10,STRG.21081.6,STRG.21081.7,STRG.21081.8,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2017	7
scaffold_11	ends_in_intron	15188367	15188367	-	asmbl_7192	none	STRG.14288.2,blat.proc3825154.chain_2834	2	STRG.14288.1,blat.proc3825154.chain_2833	2
scaffold_25	alt_acceptor	6164847	6164848	+	asmbl_33596	none	STRG.27502.4	1	STRG.27502.1,blat.proc3825178.chain_603	2
scaffold_12	starts_in_intron	15267487	15267487	-	asmbl_9064	none	STRG.15338.4,Trinity_GG_8603_c3_g1_i1,blat.proc3825156.chain_184	3	STRG.15338.1,STRG.15338.2,STRG.15338.3,blat.proc3825156.chain_178	4
scaffold_13	starts_in_intron	4613	4613	+	asmbl_10451	none	Trinity_GG_25787_c0_g1_i8,blat.proc3825172.chain_135	2	STRG.15424.1,STRG.15424.2,STRG.15424.3,Trinity_GG_25787_c0_g1_i1,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i4,Trinity_GG_25787_c0_g1_i5,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,blat.proc3825172.chain_134,blat.proc3825172.chain_136,blat.proc3825172.chain_137,blat.proc3825172.chain_138,blat.proc3825172.chain_139,blat.proc3825172.chain_141	15
scaffold_9	spliced_intron	8396091	8396292	+	asmbl_54168	none	blat.proc3825170.chain_59	1	blat.proc3825170.chain_61	1
scaffold_21	retained_intron	3120017	3120306	+	asmbl_28445	none	STRG.23942.1,Trinity_GG_30585_c1_g1_i1,blat.proc3825176.chain_1172,blat.proc3825176.chain_1173	4	STRG.23942.2	1
scaffold_9	retained_exon	8939254	8939364	-	asmbl_55145,asmbl_55147,asmbl_55149	none	STRG.11280.1,blat.proc3825152.chain_3429,blat.proc3825152.chain_3430,blat.proc3825152.chain_3431	4	STRG.11280.2,blat.proc3825152.chain_3427	2
scaffold_21	spliced_intron	10469247	10469271	+	asmbl_28873	none	STRG.24510.2	1	STRG.24510.1	1
scaffold_26	alt_acceptor	1321986	1321987	-	asmbl_35400	none	STRG.27913.2	1	blat.proc3825162.chain_1239	1
scaffold_6	starts_in_intron	3290819	3290819	+	asmbl_46826,asmbl_46828	none	blat.proc3825166.chain_3458,blat.proc3825166.chain_3459	2	STRG.7335.1,blat.proc3825166.chain_3456,blat.proc3825166.chain_3457	3
scaffold_2	starts_in_intron	14535101	14535101	+	asmbl_24947	none	blat.proc3825164.chain_2721	1	STRG.2455.1,STRG.2455.2,blat.proc3825164.chain_2722,blat.proc3825164.chain_2723	4
scaffold_2	spliced_intron	7469205	7469515	-	asmbl_23260,asmbl_23261,asmbl_23265	none	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063	5	blat.proc3825148.chain_2058,blat.proc3825148.chain_2064	2
scaffold_1	alt_donor	13825493	13825494	-	asmbl_849	none	STRG.990.2,blat.proc3825148.chain_999	2	STRG.990.3,blat.proc3825148.chain_998	2
scaffold_17	spliced_intron	1729059	1729151	+	asmbl_18625,asmbl_18627	none	STRG.20007.1,STRG.20007.2,blat.proc3825174.chain_839	3	blat.proc3825174.chain_840	1
scaffold_1	retained_intron	12338031	12338333	-	asmbl_701,asmbl_705,asmbl_709,asmbl_711,asmbl_715	none	blat.proc3825148.chain_826,blat.proc3825148.chain_833,blat.proc3825148.chain_838,blat.proc3825148.chain_840	4	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_831,blat.proc3825148.chain_834,blat.proc3825148.chain_835,blat.proc3825148.chain_839,blat.proc3825148.chain_841,blat.proc3825148.chain_842	12
scaffold_14	spliced_intron	6938531	6938657	+	asmbl_12119	none	STRG.17137.1,blat.proc3825172.chain_1916	2	blat.proc3825172.chain_1917	1
scaffold_13	alt_acceptor	381543	381544	-	asmbl_9323,asmbl_9325	none	STRG.15437.1,STRG.15437.2,blat.proc3825156.chain_263	3	STRG.15437.3,STRG.15437.4,blat.proc3825156.chain_261,blat.proc3825156.chain_262	4
scaffold_2	starts_in_intron	5732507	5732507	+	asmbl_24442	none	Trinity_GG_18368_c0_g1_i1,blat.proc3825164.chain_2028	2	STRG.1964.1,blat.proc3825164.chain_2027	2
scaffold_12	retained_exon	14882485	14882584	+	asmbl_8092,asmbl_8093	none	STRG.15273.1,STRG.15273.2,blat.proc3825170.chain_3713	3	STRG.15273.3	1
scaffold_9	alt_donor	14817773	14817774	-	asmbl_55497	none	STRG.11702.2,blat.proc3825154.chain_159	2	STRG.11702.1,STRG.11702.4,STRG.11702.6,blat.proc3825154.chain_160,blat.proc3825154.chain_163	5
scaffold_8	skipped_exon	4340424	4341174	+	asmbl_52836	none	STRG.9915.1,blat.proc3825168.chain_2487	2	STRG.9915.2,blat.proc3825168.chain_2488	2
scaffold_6	spliced_intron	11463538	11463675	-	asmbl_48755,asmbl_48757	none	STRG.7938.1,blat.proc3825152.chain_342,blat.proc3825152.chain_343	3	blat.proc3825152.chain_341	1
scaffold_10	alt_acceptor	11971466	11971467	+	asmbl_3509	none	STRG.12838.2,Trinity_GG_24389_c1_g1_i1	2	STRG.12838.5	1
scaffold_6	retained_intron	8581465	8581566	+	asmbl_47153,asmbl_47155	none	STRG.7738.2,blat.proc3825168.chain_176	2	STRG.7738.4	1
scaffold_17	spliced_intron	1592933	1593714	+	asmbl_18615	none	Trinity_GG_28259_c0_g1_i2,blat.proc3825174.chain_866	2	STRG.19996.1,Trinity_GG_28259_c0_g1_i1,blat.proc3825174.chain_867	3
scaffold_2	spliced_intron	5202056	5202363	+	asmbl_24396,asmbl_24398,asmbl_24401,asmbl_24402	none	STRG.1940.1,STRG.1940.2,STRG.1940.3,Trinity_GG_18384_c0_g1_i3,Trinity_GG_18384_c0_g1_i4,blat.proc3825164.chain_2048,blat.proc3825164.chain_2049	7	STRG.1940.4,blat.proc3825164.chain_2050	2
scaffold_11	alt_donor	17208734	17208735	-	asmbl_7256	none	STRG.14388.1,blat.proc3825154.chain_2890	2	STRG.14388.2	1
scaffold_11	retained_exon	3498241	3498441	+	asmbl_5438	none	blat.proc3825170.chain_2034	1	STRG.13484.2	1
scaffold_14	starts_in_intron	1101369	1101369	+	asmbl_11805	none	Trinity_GG_26510_c0_g1_i4,blat.proc3825172.chain_1476	2	STRG.16769.1,STRG.16769.2,STRG.16769.3,Trinity_GG_26510_c0_g1_i2,blat.proc3825172.chain_1475,blat.proc3825172.chain_1477,blat.proc3825172.chain_1478,blat.proc3825172.chain_1480	8
scaffold_27	retained_intron	3624384	3624770	+	asmbl_36213,asmbl_36215,asmbl_36217	none	Trinity_GG_33273_c0_g1_i2,Trinity_GG_33273_c0_g1_i5,blat.proc3825178.chain_2008,blat.proc3825178.chain_2009,blat.proc3825178.chain_2011	5	STRG.28832.1,Trinity_GG_33273_c0_g1_i4,blat.proc3825178.chain_2007,blat.proc3825178.chain_2010	4
scaffold_15	retained_exon	15188654	15188737	+	asmbl_15725,asmbl_15735,asmbl_15740	none	STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3536	5	STRG.18910.1,blat.proc3825172.chain_3520,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3529,blat.proc3825172.chain_3532,blat.proc3825172.chain_3535	7
scaffold_1	spliced_intron	1042580	1042741	+	asmbl_1453	none	STRG.62.4	1	STRG.62.1,Trinity_GG_17322_c0_g1_i1,blat.proc3825164.chain_90	3
scaffold_13	spliced_intron	16326282	16327028	-	asmbl_10291	none	STRG.16688.1,blat.proc3825156.chain_1463	2	STRG.16688.2,STRG.16688.3,blat.proc3825156.chain_1462	3
scaffold_6	alternate_exon	877833	877868	+	asmbl_46682	none	STRG.7158.1	1	STRG.7158.3	1
scaffold_2	retained_intron	7781346	7781544	+	asmbl_24578	none	blat.proc3825164.chain_2234	1	STRG.2075.5	1
scaffold_2	alt_acceptor	17722136	17722137	+	asmbl_25197	none	blat.proc3825164.chain_2950	1	blat.proc3825164.chain_2951	1
scaffold_14	retained_intron	9272559	9272679	-	asmbl_13365	none	blat.proc3825156.chain_2200	1	STRG.17338.1,STRG.17338.2,STRG.17338.3,STRG.17338.4,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2203,blat.proc3825156.chain_2204	8
scaffold_14	alt_acceptor	151803	151804	-	asmbl_12783	none	STRG.16711.5	1	STRG.16711.2,STRG.16711.3,blat.proc3825156.chain_1521	3
scaffold_7	alt_acceptor	286430	286431	+	asmbl_49549,asmbl_49551,asmbl_49552	none	STRG.8603.1,Trinity_GG_22049_c0_g1_i1,Trinity_GG_22049_c0_g1_i3	3	STRG.8603.2	1
scaffold_2	ends_in_intron	13961018	13961018	-	asmbl_23548	none	Trinity_GG_1316_c1_g1_i1,blat.proc3825148.chain_2370	2	STRG.2385.1,blat.proc3825148.chain_2368	2
scaffold_2	spliced_intron	16087681	16088030	-	asmbl_23665,asmbl_23668,asmbl_23669,asmbl_23670,asmbl_23671	none	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2435,blat.proc3825148.chain_2436,blat.proc3825148.chain_2437,blat.proc3825148.chain_2438	6	Trinity_GG_1349_c2_g1_i1,blat.proc3825148.chain_2440	2
scaffold_17	starts_in_intron	10025242	10025242	+	asmbl_19158	none	blat.proc3825174.chain_1506	1	STRG.20619.1	1
scaffold_10	starts_in_intron	13921694	13921694	+	asmbl_3635	none	Trinity_GG_24459_c0_g1_i1,blat.proc3825170.chain_1587	2	STRG.12981.1	1
scaffold_14	starts_in_intron	8308164	8308164	+	asmbl_12219	none	Trinity_GG_26805_c0_g1_i1,blat.proc3825172.chain_2011	2	STRG.17257.1,STRG.17257.2,blat.proc3825172.chain_2012	3
scaffold_5	alternate_exon	10652789	10652997	+	asmbl_45687	none	STRG.6347.2	1	STRG.6347.1,blat.proc3825166.chain_2562	2
scaffold_21	retained_intron	6818461	6818654	+	asmbl_28701,asmbl_28703	none	STRG.24217.1,Trinity_GG_30700_c0_g1_i3,blat.proc3825176.chain_1370,blat.proc3825176.chain_1372	4	STRG.24217.2,blat.proc3825176.chain_1368,blat.proc3825176.chain_1369,blat.proc3825176.chain_1371	4
scaffold_20	ends_in_intron	9500010	9500010	+	asmbl_26854	none	blat.proc3825176.chain_633	1	STRG.23489.2,blat.proc3825176.chain_636	2
scaffold_16	alternate_exon	5507384	5508750	-	asmbl_17119,asmbl_17122	none	STRG.19312.1,STRG.19312.2	2	STRG.19312.3,blat.proc3825158.chain_365	2
scaffold_11	retained_intron	13254292	13254374	-	asmbl_7124,asmbl_7126,asmbl_7127	none	STRG.14198.1,blat.proc3825154.chain_2770,blat.proc3825154.chain_2772,blat.proc3825154.chain_2773	4	STRG.14198.4,blat.proc3825154.chain_2769	2
scaffold_15	alt_donor	9873380	9873381	+	asmbl_15425,asmbl_15428,asmbl_15430	none	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3109,blat.proc3825172.chain_3110	4	blat.proc3825172.chain_3108	1
scaffold_24	alt_acceptor	7934966	7934967	+	asmbl_32405	none	STRG.26852.2	1	STRG.26852.1,Trinity_GG_32161_c2_g1_i2,blat.proc3825178.chain_65	3
scaffold_8	spliced_intron	1801775	1801810	-	asmbl_51706	none	STRG.9780.1	1	blat.proc3825168.chain_2303	1
scaffold_15	retained_intron	1500635	1500789	-	asmbl_13955	none	blat.proc3825156.chain_2801	1	Trinity_GG_10109_c0_g1_i15,blat.proc3825156.chain_2803,blat.proc3825156.chain_2807	3
scaffold_6	spliced_intron	16614134	16614236	+	asmbl_47712,asmbl_47713	none	STRG.8389.1,STRG.8389.2,blat.proc3825168.chain_796,blat.proc3825168.chain_798,blat.proc3825168.chain_799	5	blat.proc3825168.chain_797	1
scaffold_2	spliced_intron	2995343	2995363	-	asmbl_22951,asmbl_22953	none	STRG.1746.3,STRG.1746.4	2	STRG.1746.1,STRG.1746.2	2
scaffold_8	alt_donor	12717269	12717270	+	asmbl_53340	none	STRG.10448.2,blat.proc3825168.chain_3037	2	STRG.10448.1,blat.proc3825168.chain_3038	2
scaffold_28	retained_intron	6515507	6515534	-	asmbl_38348,asmbl_38349	none	STRG.29749.1,STRG.29749.3	2	STRG.29749.2	1
scaffold_19	spliced_intron	8331874	8332032	-	asmbl_22295	none	STRG.22291.1	1	Trinity_GG_12428_c1_g1_i1,blat.proc3825158.chain_3100	2
scaffold_18	retained_intron	281385	282126	+	asmbl_20285	none	STRG.20984.3,Trinity_GG_28852_c1_g1_i1,blat.proc3825174.chain_1904	3	STRG.20984.4,blat.proc3825174.chain_1902	2
scaffold_15	spliced_intron	522528	522575	+	asmbl_14984	none	STRG.17914.3	1	STRG.17914.2	1
scaffold_12	retained_intron	7534953	7535423	+	asmbl_7767	none	Trinity_GG_25511_c0_g1_i1,blat.proc3825170.chain_3382	2	STRG.14834.1,Trinity_GG_25511_c0_g1_i2,blat.proc3825170.chain_3383	3
scaffold_7	spliced_intron	12278830	12278991	+	asmbl_50238	none	STRG.9323.1,blat.proc3825168.chain_1767	2	blat.proc3825168.chain_1766	1
scaffold_20	skipped_exon	1615934	1618620	-	asmbl_25591	none	STRG.22893.1	1	STRG.22893.2,STRG.22893.3,STRG.22893.4	3
scaffold_8	spliced_intron	8600253	8600327	+	asmbl_53016	none	STRG.10118.1,blat.proc3825168.chain_2671	2	blat.proc3825168.chain_2672	1
scaffold_16	spliced_intron	8549399	8549668	+	asmbl_16400	none	STRG.19480.1,blat.proc3825174.chain_397	2	Trinity_GG_27978_c0_g1_i2,blat.proc3825174.chain_398	2
scaffold_5	alt_acceptor	16792930	16792931	-	asmbl_44778	none	STRG.6867.2,blat.proc3825150.chain_2980	2	STRG.6867.3	1
scaffold_5	starts_in_intron	4597318	4597318	+	asmbl_45276	none	Trinity_GG_20538_c0_g1_i1,blat.proc3825166.chain_2107	2	STRG.5907.1,blat.proc3825166.chain_2110	2
scaffold_14	alt_acceptor	9294819	9294820	-	asmbl_13375,asmbl_13376	none	STRG.17341.1,STRG.17341.2	2	STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2166,blat.proc3825156.chain_2167,blat.proc3825156.chain_2168,blat.proc3825156.chain_2169,blat.proc3825156.chain_2170,blat.proc3825156.chain_2171,blat.proc3825156.chain_2172,blat.proc3825156.chain_2174,blat.proc3825156.chain_2176	11
scaffold_15	ends_in_intron	14664675	14664675	+	asmbl_15694	none	blat.proc3825172.chain_3507	1	STRG.18882.2,Trinity_GG_27665_c0_g1_i4,blat.proc3825172.chain_3504	3
scaffold_10	alt_donor	8331991	8331992	-	asmbl_4584	none	blat.proc3825154.chain_1182	1	STRG.12592.1,blat.proc3825154.chain_1181,blat.proc3825154.chain_1187,blat.proc3825154.chain_1189,blat.proc3825154.chain_1192	5
scaffold_10	retained_exon	6705881	6705953	-	asmbl_4494	none	STRG.12500.1,blat.proc3825154.chain_1093	2	STRG.12500.2,blat.proc3825154.chain_1095	2
scaffold_11	alternate_exon	2449072	2449157	-	asmbl_6502	none	STRG.13398.3,blat.proc3825154.chain_1878	2	STRG.13398.1,STRG.13398.2	2
scaffold_9	alt_acceptor	12314457	12314458	-	asmbl_55369	none	STRG.11554.1,blat.proc3825154.chain_34	2	STRG.11554.2,blat.proc3825154.chain_33	2
scaffold_6	spliced_intron	18922318	18922547	-	asmbl_49293	none	STRG.8564.1,blat.proc3825152.chain_993	2	STRG.8564.2,Trinity_GG_4879_c0_g1_i2,blat.proc3825152.chain_994	3
scaffold_15	alt_acceptor	9047431	9047432	-	asmbl_14367	none	STRG.18450.1,blat.proc3825156.chain_3340	2	STRG.18450.2,blat.proc3825156.chain_3341	2
scaffold_7	retained_intron	5927708	5928006	+	asmbl_49831	none	Trinity_GG_22209_c0_g1_i2,blat.proc3825168.chain_1374	2	STRG.8902.1,STRG.8902.2,STRG.8902.3,Trinity_GG_22209_c0_g1_i3,Trinity_GG_22209_c0_g1_i4,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1373,blat.proc3825168.chain_1375,blat.proc3825168.chain_1376	9
scaffold_1555	alternate_exon	996	1078	-	asmbl_15976	none	STRG.30628.4	1	STRG.30628.1	1
scaffold_13	alternate_exon	896155	899038	-	asmbl_9378	none	Trinity_GG_8651_c0_g1_i9,blat.proc3825156.chain_269	2	Trinity_GG_8651_c0_g1_i8,blat.proc3825156.chain_265	2
scaffold_17	alt_acceptor	7832717	7832718	-	asmbl_18058	none	STRG.20409.1,blat.proc3825158.chain_1446	2	STRG.20409.2,blat.proc3825158.chain_1447	2
scaffold_6	alt_acceptor	2536164	2536165	+	asmbl_46764	none	STRG.7255.1	1	STRG.7255.2	1
scaffold_10	alt_acceptor	11970326	11970327	+	asmbl_3515	none	STRG.12838.3	1	STRG.12838.6	1
scaffold_24	ends_in_intron	10487046	10487046	+	asmbl_32575,asmbl_32577	none	STRG.27019.2,Trinity_GG_32229_c1_g1_i8,blat.proc3825178.chain_201	3	STRG.27019.1,STRG.27019.3,Trinity_GG_32229_c1_g1_i2,Trinity_GG_32229_c1_g1_i3,Trinity_GG_32229_c1_g1_i4,Trinity_GG_32229_c1_g1_i5,blat.proc3825178.chain_198,blat.proc3825178.chain_199,blat.proc3825178.chain_202,blat.proc3825178.chain_203	10
scaffold_19	retained_exon	8761200	8761238	-	asmbl_22310	none	STRG.22337.2,blat.proc3825158.chain_3140	2	STRG.22337.1,blat.proc3825158.chain_3139	2
scaffold_26	spliced_intron	5486047	5487189	+	asmbl_34999,asmbl_35002	none	STRG.28257.1,STRG.28257.2,Trinity_GG_32935_c1_g2_i1,blat.proc3825178.chain_1369	4	Trinity_GG_32935_c1_g2_i4,blat.proc3825178.chain_1365,blat.proc3825178.chain_1367	3
scaffold_14	alternate_exon	7430071	7430102	+	asmbl_12159	none	STRG.17180.1	1	STRG.17180.2,STRG.17180.3,blat.proc3825172.chain_1872,blat.proc3825172.chain_1873	4
scaffold_12	spliced_intron	9236297	9236367	-	asmbl_8666,asmbl_8669	none	STRG.14939.3,blat.proc3825154.chain_3451	2	STRG.14939.5,blat.proc3825154.chain_3447,blat.proc3825154.chain_3455,blat.proc3825154.chain_3456	4
scaffold_13	retained_intron	7266430	7266595	-	asmbl_9871	none	blat.proc3825156.chain_939	1	STRG.16029.1,blat.proc3825156.chain_940,blat.proc3825156.chain_941,blat.proc3825156.chain_943	4
scaffold_15	ends_in_intron	4133364	4133364	-	asmbl_14129	none	Trinity_GG_10195_c0_g1_i3,blat.proc3825156.chain_2966	2	STRG.18161.1,blat.proc3825156.chain_2965	2
scaffold_7	alt_donor	18394915	18394916	-	asmbl_51467,asmbl_51468,asmbl_51469,asmbl_51470,asmbl_51471,asmbl_51473,asmbl_51479,asmbl_51480	none	STRG.9670.1,STRG.9670.2,STRG.9670.3,STRG.9670.4,STRG.9670.6,STRG.9670.7,blat.proc3825152.chain_2013,blat.proc3825152.chain_2016,blat.proc3825152.chain_2018,blat.proc3825152.chain_2020	10	STRG.9670.5,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,blat.proc3825152.chain_2012,blat.proc3825152.chain_2015	5
scaffold_11	alternate_exon	9184717	9184874	-	asmbl_6918	none	STRG.13963.1,Trinity_GG_7784_c0_g1_i2,blat.proc3825154.chain_2472	3	STRG.13963.2,Trinity_GG_7784_c0_g1_i1,Trinity_GG_7784_c0_g2_i1,blat.proc3825154.chain_2473	4
scaffold_2	starts_in_intron	14748444	14748444	+	asmbl_24975	none	STRG.2475.3	1	STRG.2475.1,STRG.2475.2,Trinity_GG_18661_c0_g1_i8,blat.proc3825164.chain_2627,blat.proc3825164.chain_2629,blat.proc3825164.chain_2630	6
scaffold_6	retained_intron	7171271	7171397	+	asmbl_47050,asmbl_47053,asmbl_47054	none	STRG.7628.2,STRG.7628.3,Trinity_GG_21499_c0_g1_i2,blat.proc3825168.chain_81	4	STRG.7628.1,STRG.7628.4	2
scaffold_19	retained_intron	3309537	3309592	-	asmbl_22099	none	STRG.22021.1,Trinity_GG_12290_c0_g1_i1,blat.proc3825158.chain_2861	3	STRG.22021.2	1
scaffold_16	retained_intron	290653	291015	+	asmbl_16015	none	STRG.19019.3,Trinity_GG_27744_c0_g1_i11,blat.proc3825172.chain_3690	3	STRG.19019.1,STRG.19019.2,Trinity_GG_27744_c0_g1_i2,blat.proc3825172.chain_3687,blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	6
scaffold_22	starts_in_intron	11134552	11134552	-	asmbl_29649	none	Trinity_GG_14226_c0_g1_i1	1	STRG.25446.1,blat.proc3825160.chain_2575	2
scaffold_5	spliced_intron	10253401	10253602	-	asmbl_44331,asmbl_44333	none	STRG.6327.1,blat.proc3825150.chain_2456,blat.proc3825150.chain_2457	3	STRG.6327.2,blat.proc3825150.chain_2458,blat.proc3825150.chain_2459	3
scaffold_27	starts_in_intron	3997686	3997686	+	asmbl_36244,asmbl_36248,asmbl_36249	none	STRG.28871.2,STRG.28871.3,Trinity_GG_33286_c0_g1_i7,blat.proc3825178.chain_2036	4	STRG.28871.1,blat.proc3825178.chain_2033,blat.proc3825178.chain_2035,blat.proc3825178.chain_2038	4
scaffold_1	alternate_exon	6829325	6830974	-	asmbl_383	none	STRG.474.2,blat.proc3825148.chain_463	2	blat.proc3825148.chain_464	1
scaffold_1	starts_in_intron	17675319	17675319	-	asmbl_1057	none	blat.proc3825148.chain_1233	1	STRG.1239.1,blat.proc3825148.chain_1234	2
scaffold_10	starts_in_intron	13915368	13915368	+	asmbl_3628	none	STRG.12983.3,Trinity_GG_24464_c1_g1_i1,blat.proc3825170.chain_1598	3	STRG.12983.1,STRG.12983.2,blat.proc3825170.chain_1594,blat.proc3825170.chain_1595,blat.proc3825170.chain_1596,blat.proc3825170.chain_1597	6
scaffold_26	starts_in_intron	7904316	7904316	-	asmbl_35720	none	Trinity_GG_15852_c1_g1_i1,blat.proc3825162.chain_1563	2	STRG.28415.1	1
scaffold_15	retained_exon	15761550	15761726	+	asmbl_15817	none	STRG.18961.2,Trinity_GG_27708_c0_g1_i1,blat.proc3825172.chain_3630	3	STRG.18961.1,Trinity_GG_27708_c0_g1_i2,blat.proc3825172.chain_3631	3
scaffold_3	alt_donor	8253370	8253371	+	asmbl_40207	none	STRG.3402.2	1	STRG.3402.1,Trinity_GG_19231_c0_g1_i2,blat.proc3825164.chain_3649	3
scaffold_1	ends_in_intron	5232194	5232194	-	asmbl_252	none	Trinity_GG_168_c1_g1_i1,Trinity_GG_168_c1_g1_i2,blat.proc3825148.chain_290,blat.proc3825148.chain_291	4	STRG.334.1	1
scaffold_21	ends_in_intron	1053595	1053595	-	asmbl_27381,asmbl_27382	none	STRG.23787.3,STRG.23787.4	2	STRG.23787.1,STRG.23787.2,Trinity_GG_13262_c0_g1_i1,Trinity_GG_13262_c0_g1_i12,Trinity_GG_13262_c0_g1_i2,Trinity_GG_13262_c0_g1_i8,blat.proc3825160.chain_922,blat.proc3825160.chain_924,blat.proc3825160.chain_925,blat.proc3825160.chain_926	10
scaffold_2	retained_intron	5440602	5440711	+	asmbl_24420	none	STRG.1953.1,blat.proc3825164.chain_2075	2	STRG.1953.3	1
scaffold_19	alt_donor	12007710	12007711	-	asmbl_22440,asmbl_22441	none	Trinity_GG_12527_c0_g1_i2,Trinity_GG_12527_c0_g1_i4,blat.proc3825158.chain_3280,blat.proc3825158.chain_3281	4	STRG.22522.1	1
scaffold_4	alt_acceptor	13076257	13076258	+	asmbl_41777	none	blat.proc3825166.chain_1380	1	STRG.4947.4,STRG.4947.5,blat.proc3825166.chain_1382	3
scaffold_15	retained_intron	1504460	1505131	-	asmbl_13956	none	Trinity_GG_10091_c0_g1_i1,Trinity_GG_10091_c0_g1_i4,blat.proc3825156.chain_2767,blat.proc3825156.chain_2768	4	STRG.17963.1,blat.proc3825156.chain_2766	2
scaffold_3	starts_in_intron	12664924	12664924	-	asmbl_39222	none	blat.proc3825148.chain_3515	1	STRG.3663.1,STRG.3663.2,blat.proc3825148.chain_3516	3
scaffold_20	starts_in_intron	2638082	2638082	-	asmbl_25659	none	blat.proc3825160.chain_45	1	blat.proc3825160.chain_46	1
scaffold_3	starts_in_intron	14843141	14843141	+	asmbl_40554	none	STRG.3832.2,Trinity_GG_19457_c2_g1_i1,blat.proc3825166.chain_321	3	STRG.3832.1,Trinity_GG_19457_c0_g1_i1,Trinity_GG_19457_c0_g1_i3,blat.proc3825166.chain_316,blat.proc3825166.chain_317	5
scaffold_340	ends_in_intron	1350	1350	+	asmbl_41013	none	blat.proc3825178.chain_3392	1	STRG.30295.1,STRG.30295.2,STRG.30295.3,STRG.30295.4,STRG.30295.5	5
scaffold_5	retained_intron	9085338	9085435	+	asmbl_45602,asmbl_45606	none	blat.proc3825166.chain_2474,blat.proc3825166.chain_2476	2	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6
scaffold_6	starts_in_intron	13258380	13258380	-	asmbl_48904	none	STRG.8086.2,blat.proc3825152.chain_502	2	STRG.8086.1	1
scaffold_9	alt_donor	10271869	10271870	+	asmbl_54281	none	STRG.11372.2	1	STRG.11372.1,blat.proc3825170.chain_111	2
scaffold_14	retained_intron	3388662	3389749	+	asmbl_11940	none	Trinity_GG_26615_c0_g1_i1,blat.proc3825172.chain_1688	2	STRG.16928.1,blat.proc3825172.chain_1689	2
scaffold_9	spliced_intron	13040881	13040907	+	asmbl_54482	none	STRG.11611.1	1	STRG.11611.2	1
scaffold_16	ends_in_intron	8070783	8070783	-	asmbl_17223	none	Trinity_GG_10901_c0_g1_i2,blat.proc3825158.chain_559	2	STRG.19451.1	1
scaffold_20	starts_in_intron	11948814	11948814	-	asmbl_26205	none	STRG.23700.3,blat.proc3825160.chain_680	2	STRG.23700.2,blat.proc3825160.chain_679,blat.proc3825160.chain_681,blat.proc3825160.chain_682	4
scaffold_9	retained_intron	6903544	6903648	-	asmbl_55089	none	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3394	2	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3389,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	7
scaffold_14	alternate_exon	2887920	2888239	-	asmbl_12981	none	STRG.16887.2,blat.proc3825156.chain_1635	2	STRG.16887.1,STRG.16887.3,blat.proc3825156.chain_1636,blat.proc3825156.chain_1637	4
scaffold_698	alt_acceptor	4092	4093	+	asmbl_49531	none	STRG.30433.2	1	STRG.30433.1,blat.proc3825178.chain_3496	2
scaffold_19	alt_acceptor	12822816	12822817	-	asmbl_22545,asmbl_22546,asmbl_22548,asmbl_22549,asmbl_22554	none	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3412,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	7	blat.proc3825158.chain_3413	1
scaffold_19	alt_donor	752098	752099	-	asmbl_22004	none	Trinity_GG_12190_c0_g1_i1,blat.proc3825158.chain_2701	2	STRG.21859.1,blat.proc3825158.chain_2700	2
scaffold_8	retained_intron	6019135	6019279	+	asmbl_52920	none	Trinity_GG_22906_c2_g1_i2,Trinity_GG_22906_c2_g1_i3,blat.proc3825168.chain_2620,blat.proc3825168.chain_2621	4	STRG.10013.4,blat.proc3825168.chain_2619	2
scaffold_5	retained_exon	17036890	17037031	+	asmbl_46134	none	STRG.6881.1,Trinity_GG_21063_c0_g1_i1,blat.proc3825166.chain_3040	3	STRG.6881.2,Trinity_GG_21063_c0_g1_i2,blat.proc3825166.chain_3041	3
scaffold_9	retained_intron	17851315	17851392	+	asmbl_54653	none	STRG.11873.3	1	STRG.11873.1,Trinity_GG_23881_c0_g1_i10,Trinity_GG_23881_c0_g1_i7,blat.proc3825170.chain_572,blat.proc3825170.chain_573	5
scaffold_17	alt_donor	10067457	10067458	+	asmbl_19169	none	STRG.20631.1,Trinity_GG_28612_c0_g1_i2,blat.proc3825174.chain_1515	3	STRG.20631.2,Trinity_GG_28612_c0_g1_i4,blat.proc3825174.chain_1514	3
scaffold_8	retained_exon	16504948	16505055	-	asmbl_52420	none	STRG.10629.5	1	blat.proc3825152.chain_2932	1
scaffold_19	ends_in_intron	1105676	1105676	-	asmbl_22032	none	Trinity_GG_12207_c0_g1_i3,blat.proc3825158.chain_2732	2	STRG.21903.1,STRG.21903.2,STRG.21903.3,STRG.21903.4,Trinity_GG_12207_c0_g1_i2,blat.proc3825158.chain_2733	6
scaffold_3	starts_in_intron	5260951	5260951	-	asmbl_38841	none	blat.proc3825148.chain_3055	1	STRG.3218.1,Trinity_GG_1739_c0_g1_i5,blat.proc3825148.chain_3053,blat.proc3825148.chain_3056	4
scaffold_13	ends_in_intron	7096555	7096555	-	asmbl_9851	none	STRG.16009.1,blat.proc3825156.chain_984	2	blat.proc3825156.chain_979,blat.proc3825156.chain_981,blat.proc3825156.chain_983	3
scaffold_2	starts_in_intron	5447598	5447598	+	asmbl_24422	none	Trinity_GG_18402_c0_g1_i2,blat.proc3825164.chain_2077	2	STRG.1953.1,STRG.1953.2,STRG.1953.3,Trinity_GG_18402_c0_g1_i5,blat.proc3825164.chain_2074,blat.proc3825164.chain_2075,blat.proc3825164.chain_2076	7
scaffold_9	alt_donor	11070771	11070772	-	asmbl_55273	none	STRG.11422.1,Trinity_GG_6310_c0_g1_i3,blat.proc3825152.chain_3652	3	STRG.11422.2,Trinity_GG_6310_c0_g1_i1,blat.proc3825152.chain_3653	3
scaffold_17	alt_acceptor	5507352	5507353	-	asmbl_17943	none	STRG.20270.2	1	STRG.20270.1	1
scaffold_5	retained_intron	13067434	13067568	+	asmbl_45847	none	Trinity_GG_20876_c0_g1_i1,blat.proc3825166.chain_2729	2	STRG.6536.1,blat.proc3825166.chain_2728	2
scaffold_7	alt_donor	18783525	18783526	+	asmbl_50533,asmbl_50534	none	STRG.9696.2,STRG.9696.3	2	STRG.9696.1,STRG.9696.4	2
scaffold_12	alt_donor	7271987	7271988	+	asmbl_7734	none	STRG.14800.2,blat.proc3825170.chain_3339	2	STRG.14800.1,blat.proc3825170.chain_3340	2
scaffold_2	ends_in_intron	17974145	17974145	+	asmbl_25210	none	blat.proc3825164.chain_2963	1	STRG.2689.1,STRG.2689.2,blat.proc3825164.chain_2961,blat.proc3825164.chain_2962,blat.proc3825164.chain_2964	5
scaffold_21	skipped_exon	4099856	4102411	+	asmbl_28501	none	STRG.24000.1	1	STRG.24000.4	1
scaffold_2	alt_acceptor	5717665	5717666	+	asmbl_24435,asmbl_24436	none	STRG.1961.1,Trinity_GG_18408_c0_g1_i2,blat.proc3825164.chain_2083	3	STRG.1961.2,STRG.1961.3,blat.proc3825164.chain_2084	3
scaffold_10	ends_in_intron	950492	950492	+	asmbl_2892	none	Trinity_GG_23961_c0_g1_i3,blat.proc3825170.chain_705	2	STRG.11975.1,Trinity_GG_23961_c0_g1_i1,Trinity_GG_23961_c0_g1_i2,Trinity_GG_23961_c0_g1_i4,blat.proc3825170.chain_706,blat.proc3825170.chain_707,blat.proc3825170.chain_708	7
scaffold_13	retained_intron	16250502	16250688	+	asmbl_11566	none	Trinity_GG_26497_c0_g1_i4,blat.proc3825172.chain_1458	2	STRG.16679.2,blat.proc3825172.chain_1460,blat.proc3825172.chain_1461	3
scaffold_19	retained_exon	4792848	4792986	-	asmbl_22128	none	STRG.22056.2,blat.proc3825158.chain_2885	2	STRG.22056.1,blat.proc3825158.chain_2887	2
scaffold_19	starts_in_intron	6405189	6405189	+	asmbl_21410	none	Trinity_GG_29532_c0_g1_i4,blat.proc3825174.chain_3139	2	STRG.22168.1,Trinity_GG_29532_c0_g1_i3,blat.proc3825174.chain_3137	3
scaffold_4	alt_donor	9716300	9716301	-	asmbl_42819	none	STRG.4739.2,blat.proc3825150.chain_944	2	STRG.4739.1,blat.proc3825150.chain_943	2
scaffold_13	retained_intron	2271430	2271533	-	asmbl_9438,asmbl_9441	none	STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_394	5	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_393,blat.proc3825156.chain_395,blat.proc3825156.chain_397,blat.proc3825156.chain_398,blat.proc3825156.chain_399,blat.proc3825156.chain_400	15
scaffold_6	spliced_intron	17883201	17883316	-	asmbl_49210,asmbl_49214,asmbl_49215	none	STRG.8481.1,STRG.8481.3,blat.proc3825152.chain_879,blat.proc3825152.chain_880	4	Trinity_GG_4813_c0_g1_i6,blat.proc3825152.chain_877	2
scaffold_7	alt_donor	13213351	13213352	+	asmbl_50324	none	blat.proc3825168.chain_1942	1	STRG.9429.3,STRG.9429.4	2
scaffold_14	starts_in_intron	15946239	15946239	+	asmbl_12654	none	blat.proc3825172.chain_2566	1	blat.proc3825172.chain_2565	1
scaffold_24	ends_in_intron	8896538	8896538	-	asmbl_33120	none	blat.proc3825162.chain_277	1	STRG.26912.1	1
scaffold_15	alt_acceptor	8986847	8986848	+	asmbl_15372,asmbl_15373	none	STRG.18445.1,STRG.18445.2,blat.proc3825172.chain_3138,blat.proc3825172.chain_3139	4	blat.proc3825172.chain_3141	1
scaffold_25	skipped_exon	400757	401602	+	asmbl_33327	none	STRG.27085.1,blat.proc3825178.chain_261	2	blat.proc3825178.chain_262	1
scaffold_20	retained_intron	8293604	8293726	+	asmbl_26756,asmbl_26757,asmbl_26758	none	STRG.23374.1,STRG.23374.3,STRG.23374.4,Trinity_GG_30200_c1_g1_i1,blat.proc3825176.chain_521	5	STRG.23374.2,blat.proc3825176.chain_522	2
scaffold_5	starts_in_intron	14711163	14711163	+	asmbl_45964	none	Trinity_GG_20949_c0_g1_i1,blat.proc3825166.chain_2847	2	STRG.6674.1,blat.proc3825166.chain_2848	2
scaffold_16	spliced_intron	9145719	9145955	+	asmbl_16459,asmbl_16461,asmbl_16463	none	STRG.19514.1,blat.proc3825174.chain_435,blat.proc3825174.chain_436,blat.proc3825174.chain_437	4	STRG.19514.2,blat.proc3825174.chain_438	2
scaffold_254	ends_in_intron	4357	4357	-	asmbl_34657	none	STRG.30251.2,Trinity_GG_16973_c0_g1_i1,blat.proc3825162.chain_3383	3	STRG.30251.1	1
scaffold_20	starts_in_intron	6977509	6977509	+	asmbl_26688	none	Trinity_GG_30156_c0_g1_i3,blat.proc3825176.chain_447	2	STRG.23262.1,STRG.23262.2,STRG.23262.3,blat.proc3825176.chain_445,blat.proc3825176.chain_446	5
scaffold_28	retained_intron	233915	233981	+	asmbl_37259,asmbl_37260	none	blat.proc3825178.chain_2481,blat.proc3825178.chain_2483	2	STRG.29253.1,STRG.29253.2,blat.proc3825178.chain_2480,blat.proc3825178.chain_2482,blat.proc3825178.chain_2484	5
scaffold_28	alt_acceptor	3293109	3293110	-	asmbl_38144	none	STRG.29547.1,blat.proc3825162.chain_2702	2	STRG.29547.2,blat.proc3825162.chain_2703	2
scaffold_1	skipped_exon	4237758	4240318	+	asmbl_1646,asmbl_1654	none	STRG.256.2,STRG.256.4,blat.proc3825164.chain_403	3	STRG.256.1,STRG.256.3,STRG.256.5,blat.proc3825164.chain_401,blat.proc3825164.chain_402,blat.proc3825164.chain_404	6
scaffold_17	starts_in_intron	3987525	3987525	-	asmbl_17834,asmbl_17835	none	blat.proc3825158.chain_1216	1	STRG.20158.2,blat.proc3825158.chain_1214	2
scaffold_16	alt_acceptor	14655986	14655987	-	asmbl_17486	none	STRG.19863.2,blat.proc3825158.chain_906	2	STRG.19863.1,blat.proc3825158.chain_905	2
scaffold_7	starts_in_intron	15595874	15595874	+	asmbl_50449	none	blat.proc3825168.chain_2063	1	STRG.9560.1,STRG.9560.2,STRG.9560.3,Trinity_GG_22613_c0_g1_i1,blat.proc3825168.chain_2061,blat.proc3825168.chain_2062	6
scaffold_21	alternate_exon	692285	692434	+	asmbl_28282,asmbl_28285	none	STRG.23756.3,STRG.23756.4,Trinity_GG_30469_c0_g1_i1	3	STRG.23756.1,STRG.23756.2	2
scaffold_23	alt_acceptor	7402818	7402819	+	asmbl_31693,asmbl_31695	none	STRG.26061.2,STRG.26061.3	2	STRG.26061.1	1
scaffold_16	alt_acceptor	14546074	14546075	-	asmbl_17459	none	blat.proc3825158.chain_900,blat.proc3825158.chain_901	2	blat.proc3825158.chain_902	1
scaffold_1	alternate_exon	11745316	11745630	+	asmbl_2142	none	Trinity_GG_17813_c0_g1_i2,blat.proc3825164.chain_972	2	STRG.789.2,blat.proc3825164.chain_970	2
scaffold_11	retained_intron	8567155	8567273	+	asmbl_5801,asmbl_5802	none	Trinity_GG_24965_c0_g1_i1,Trinity_GG_24965_c0_g1_i2,blat.proc3825170.chain_2434,blat.proc3825170.chain_2436	4	STRG.13873.1,Trinity_GG_24965_c0_g1_i3,blat.proc3825170.chain_2435	3
scaffold_4	skipped_exon	14981928	14982524	+	asmbl_41915	none	STRG.5107.3,blat.proc3825166.chain_1523	2	STRG.5107.1,STRG.5107.2,blat.proc3825166.chain_1524	3
scaffold_5	retained_exon	11630482	11630545	-	asmbl_44417	none	blat.proc3825150.chain_2642	1	blat.proc3825150.chain_2643	1
scaffold_5	alt_acceptor	6618028	6618029	-	asmbl_44118	none	STRG.6066.2	1	STRG.6066.1,blat.proc3825150.chain_2270,blat.proc3825150.chain_2271	3
scaffold_2	retained_intron	2995469	2995510	-	asmbl_22951	none	STRG.1746.4	1	STRG.1746.1	1
scaffold_2	alt_acceptor	4900235	4900236	-	asmbl_23112	none	STRG.1910.1,blat.proc3825148.chain_1896	2	STRG.1910.2	1
scaffold_3	spliced_intron	4267463	4267695	-	asmbl_38795	none	STRG.3121.2	1	STRG.3121.1,STRG.3121.3,Trinity_GG_1688_c0_g1_i1,Trinity_GG_1688_c0_g2_i2,blat.proc3825148.chain_2979,blat.proc3825148.chain_2980	6
scaffold_24	starts_in_intron	5936175	5936175	+	asmbl_32268	none	blat.proc3825176.chain_3663	1	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	12
scaffold_5	starts_in_intron	18992732	18992732	+	asmbl_46303	none	STRG.7016.2	1	STRG.7016.1,Trinity_GG_21117_c1_g1_i1,Trinity_GG_21117_c1_g1_i2,blat.proc3825166.chain_3122,blat.proc3825166.chain_3123	5
scaffold_23	alt_acceptor	7005777	7005778	-	asmbl_31005,asmbl_31008	none	STRG.26025.2,STRG.26025.5,blat.proc3825160.chain_3123	3	STRG.26025.3	1
scaffold_7	starts_in_intron	3334431	3334431	-	asmbl_50788	none	STRG.8738.1	1	STRG.8738.2,blat.proc3825152.chain_1207	2
scaffold_4	starts_in_intron	1648653	1648653	+	asmbl_41127	none	Trinity_GG_19646_c0_g1_i2,blat.proc3825166.chain_649	2	STRG.4201.1,blat.proc3825166.chain_648	2
scaffold_27	alt_donor	2881216	2881217	+	asmbl_36142,asmbl_36143	none	STRG.28771.1,STRG.28771.2,blat.proc3825178.chain_1941,blat.proc3825178.chain_1943	4	STRG.28771.3,blat.proc3825178.chain_1938,blat.proc3825178.chain_1939,blat.proc3825178.chain_1940	4
scaffold_2	alt_acceptor	3995654	3995655	+	asmbl_24326	none	STRG.1836.2,blat.proc3825164.chain_1988	2	STRG.1836.1,blat.proc3825164.chain_1987	2
scaffold_26	alt_acceptor	3561045	3561046	+	asmbl_34791,asmbl_34793,asmbl_34794	none	STRG.28036.1,STRG.28036.3,STRG.28036.4	3	STRG.28036.2	1
scaffold_24	spliced_intron	727022	727258	-	asmbl_32705,asmbl_32706	none	STRG.26355.1,Trinity_GG_14732_c0_g1_i1,Trinity_GG_14732_c0_g1_i3,blat.proc3825160.chain_3473,blat.proc3825160.chain_3474	5	Trinity_GG_14732_c0_g1_i2,blat.proc3825160.chain_3475	2
scaffold_9	spliced_intron	8396091	8396249	+	asmbl_54166,asmbl_54167,asmbl_54171,asmbl_54172,asmbl_54173	none	STRG.11261.1,STRG.11261.2,STRG.11261.3,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_62	6	blat.proc3825170.chain_61	1
scaffold_17	alternate_exon	6824129	6829390	-	asmbl_17993	none	blat.proc3825158.chain_1392	1	STRG.20345.3,Trinity_GG_11448_c1_g1_i2,blat.proc3825158.chain_1387,blat.proc3825158.chain_1397	4
scaffold_10	spliced_intron	8492106	8492342	-	asmbl_4594	none	STRG.12607.1,blat.proc3825154.chain_1213	2	STRG.12607.2,blat.proc3825154.chain_1214	2
scaffold_19	alternate_exon	1066366	1066716	-	asmbl_22017	none	STRG.21892.2,blat.proc3825158.chain_2722	2	STRG.21892.1	1
scaffold_20	spliced_intron	1614927	1615776	-	asmbl_25592	none	STRG.22893.4	1	STRG.22893.1,STRG.22893.2,STRG.22893.3,Trinity_GG_12768_c0_g1_i1,Trinity_GG_12768_c0_g1_i2,Trinity_GG_12768_c2_g1_i1,blat.proc3825158.chain_3723,blat.proc3825158.chain_3724,blat.proc3825158.chain_3726	9
scaffold_16	retained_intron	2172434	2173787	+	asmbl_16111,asmbl_16114	none	STRG.19116.1,Trinity_GG_27764_c0_g1_i6,blat.proc3825172.chain_3723,blat.proc3825172.chain_3724	4	STRG.19116.2,blat.proc3825172.chain_3725	2
scaffold_2	retained_intron	14361444	14361522	+	asmbl_24921	none	STRG.2438.2,blat.proc3825164.chain_2689	2	STRG.2438.1,blat.proc3825164.chain_2691,blat.proc3825164.chain_2692	3
scaffold_11	retained_exon	7924530	7924768	+	asmbl_5696	none	STRG.13804.5,Trinity_GG_24903_c0_g1_i2,blat.proc3825170.chain_2323	3	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3
scaffold_1	retained_intron	12336858	12337333	-	asmbl_704,asmbl_712,asmbl_714,asmbl_715	none	blat.proc3825148.chain_825,blat.proc3825148.chain_834,blat.proc3825148.chain_839,blat.proc3825148.chain_840	4	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_826,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_831,blat.proc3825148.chain_833,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_841,blat.proc3825148.chain_842	12
scaffold_4	alt_donor	17109598	17109599	+	asmbl_42033,asmbl_42034,asmbl_42035,asmbl_42036	none	STRG.5308.1,STRG.5308.2,STRG.5308.3,STRG.5308.4,blat.proc3825166.chain_1666,blat.proc3825166.chain_1668,blat.proc3825166.chain_1669	7	Trinity_GG_20255_c0_g1_i1	1
scaffold_15	alt_acceptor	15450442	15450443	+	asmbl_15786,asmbl_15793,asmbl_15794,asmbl_15795	none	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i3,blat.proc3825172.chain_3619,blat.proc3825172.chain_3621,blat.proc3825172.chain_3624	7	Trinity_GG_27706_c0_g1_i6,blat.proc3825172.chain_3625	2
scaffold_4	starts_in_intron	13588790	13588790	+	asmbl_41805	none	Trinity_GG_20083_c0_g1_i3,blat.proc3825166.chain_1392	2	STRG.4984.1,STRG.4984.2,blat.proc3825166.chain_1390,blat.proc3825166.chain_1391	4
scaffold_7	alt_acceptor	7612328	7612329	-	asmbl_50950	none	STRG.9014.1,blat.proc3825152.chain_1363	2	STRG.9014.2,STRG.9014.3,STRG.9014.4,blat.proc3825152.chain_1361	4
scaffold_18	ends_in_intron	4849478	4849478	+	asmbl_20570	none	blat.proc3825174.chain_2172	1	STRG.21278.1,STRG.21278.2,STRG.21278.3,Trinity_GG_28997_c0_g1_i1,Trinity_GG_28997_c0_g1_i4,Trinity_GG_28997_c0_g1_i5,blat.proc3825174.chain_2169,blat.proc3825174.chain_2170,blat.proc3825174.chain_2171	9
scaffold_25	alt_acceptor	7735160	7735161	+	asmbl_33676	none	STRG.27598.1,blat.proc3825178.chain_679	2	STRG.27598.2	1
scaffold_14	alt_donor	12351303	12351304	+	asmbl_12424	none	STRG.17576.3,blat.proc3825172.chain_2274	2	STRG.17576.1,STRG.17576.2,blat.proc3825172.chain_2273	3
scaffold_9	retained_intron	3375064	3375256	+	asmbl_53894	none	blat.proc3825168.chain_3419	1	STRG.10943.1,blat.proc3825168.chain_3418,blat.proc3825168.chain_3420	3
scaffold_10	alt_acceptor	7667502	7667503	+	asmbl_3286,asmbl_3289,asmbl_3290	none	STRG.12555.1,STRG.12555.3,blat.proc3825170.chain_1182,blat.proc3825170.chain_1183	4	STRG.12555.2,blat.proc3825170.chain_1181	2
scaffold_20	retained_intron	8293418	8293589	+	asmbl_26756,asmbl_26757,asmbl_26758,asmbl_26759	none	STRG.23374.1,STRG.23374.2,STRG.23374.3,STRG.23374.4,Trinity_GG_30200_c1_g1_i1,blat.proc3825176.chain_521	6	blat.proc3825176.chain_522	1
scaffold_11	starts_in_intron	8727776	8727776	+	asmbl_5834	none	Trinity_GG_24977_c0_g1_i4,blat.proc3825170.chain_2460	2	STRG.13892.2,STRG.13892.5,Trinity_GG_24977_c0_g1_i8,blat.proc3825170.chain_2455	4
scaffold_11	skipped_exon	14532679	14533569	+	asmbl_6089	none	STRG.14252.3,Trinity_GG_25124_c0_g1_i3,blat.proc3825170.chain_2707	3	STRG.14252.2,Trinity_GG_25124_c0_g1_i1,blat.proc3825170.chain_2710	3
scaffold_24	alt_acceptor	4836881	4836882	+	asmbl_32207	none	blat.proc3825176.chain_3524	1	STRG.26613.1,blat.proc3825176.chain_3523	2
scaffold_1	alternate_exon	2398031	2401095	-	asmbl_121	none	STRG.155.1,blat.proc3825148.chain_129	2	STRG.155.2,Trinity_GG_85_c0_g1_i1,blat.proc3825148.chain_130	3
scaffold_23	retained_intron	10897406	10897583	+	asmbl_31892	none	blat.proc3825176.chain_3257	1	STRG.26291.2,blat.proc3825176.chain_3256	2
scaffold_6	alt_acceptor	10531381	10531382	+	asmbl_47285	none	STRG.7889.1	1	blat.proc3825168.chain_336	1
scaffold_4	alt_acceptor	4417088	4417089	+	asmbl_41259	none	blat.proc3825166.chain_852	1	Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_850	2
scaffold_1	starts_in_intron	16479316	16479316	-	asmbl_996	none	blat.proc3825148.chain_1100	1	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1097,blat.proc3825148.chain_1098,blat.proc3825148.chain_1099,blat.proc3825148.chain_1102,blat.proc3825148.chain_1104	8
scaffold_3	retained_intron	5951454	5951658	-	asmbl_38884,asmbl_38885,asmbl_38886	none	STRG.3259.2,blat.proc3825148.chain_3163,blat.proc3825148.chain_3164	3	STRG.3259.1,STRG.3259.3,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3161,blat.proc3825148.chain_3165	6
scaffold_28	alt_acceptor	155674	155675	-	asmbl_37899	none	STRG.29243.1	1	STRG.29243.2	1
scaffold_28	spliced_intron	5390808	5391169	+	asmbl_37586	none	Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868	2	STRG.29687.4,Trinity_GG_33768_c0_g1_i8,blat.proc3825178.chain_2867	3
scaffold_28	spliced_intron	221848	222198	-	asmbl_37900	none	STRG.29247.2	1	STRG.29247.1,STRG.29247.3	2
scaffold_28	alt_donor	4581039	4581040	-	asmbl_38218,asmbl_38219	none	STRG.29636.1,STRG.29636.2,blat.proc3825162.chain_2823,blat.proc3825162.chain_2824	4	blat.proc3825162.chain_2825	1
scaffold_2	retained_intron	7827162	7827319	-	asmbl_23282	none	STRG.2078.3,Trinity_GG_1152_c0_g1_i4,blat.proc3825148.chain_2096	3	STRG.2078.2,Trinity_GG_1152_c0_g1_i5,blat.proc3825148.chain_2093	3
scaffold_28	alt_acceptor	2190092	2190093	-	asmbl_38020	none	STRG.29384.1	1	STRG.29384.2,blat.proc3825162.chain_2559	2
scaffold_27	starts_in_intron	5435388	5435388	-	asmbl_37009	none	blat.proc3825162.chain_2202	1	STRG.28961.1,blat.proc3825162.chain_2203	2
scaffold_5	ends_in_intron	4539867	4539867	+	asmbl_45271	none	blat.proc3825166.chain_2038	1	STRG.5908.1,blat.proc3825166.chain_2039,blat.proc3825166.chain_2040	3
scaffold_27	starts_in_intron	2536591	2536591	+	asmbl_36088	none	blat.proc3825178.chain_1812	1	STRG.28724.1,blat.proc3825178.chain_1813	2
scaffold_27	alternate_exon	1028333	1028646	-	asmbl_36740	none	STRG.28610.2,blat.proc3825162.chain_1756	2	STRG.28610.3,blat.proc3825162.chain_1755	2
scaffold_10	alt_donor	16997906	16997907	-	asmbl_5022	none	STRG.13144.2,Trinity_GG_7364_c0_g1_i2,blat.proc3825154.chain_1736	3	STRG.13144.1,Trinity_GG_7364_c0_g1_i1,blat.proc3825154.chain_1735	3
scaffold_3	retained_exon	16077959	16078006	-	asmbl_39473,asmbl_39474	none	STRG.3896.1,STRG.3896.2,blat.proc3825150.chain_7,blat.proc3825150.chain_8	4	STRG.3896.3,STRG.3896.4	2
scaffold_14	spliced_intron	8278439	8279308	+	asmbl_12216	none	STRG.17251.3	1	STRG.17251.1,STRG.17251.4,blat.proc3825172.chain_2028,blat.proc3825172.chain_2029	4
scaffold_15	retained_intron	13325591	13325794	+	asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15635,asmbl_15636,asmbl_15637	none	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	8	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3389	6
scaffold_14	ends_in_intron	8038520	8038520	+	asmbl_12197	none	Trinity_GG_26807_c0_g1_i8,blat.proc3825172.chain_2016	2	blat.proc3825172.chain_2018	1
scaffold_4	alt_acceptor	4113774	4113775	-	asmbl_42487	none	blat.proc3825150.chain_479	1	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_477,blat.proc3825150.chain_481,blat.proc3825150.chain_482	6
scaffold_20	alt_acceptor	7471397	7471398	-	asmbl_25907,asmbl_25912,asmbl_25913	none	blat.proc3825160.chain_459,blat.proc3825160.chain_461,blat.proc3825160.chain_463	3	blat.proc3825160.chain_467	1
scaffold_6	alternate_exon	5265172	5265500	+	asmbl_46936	none	STRG.7498.2,blat.proc3825166.chain_3697	2	STRG.7498.1,STRG.7498.3,blat.proc3825166.chain_3700	3
scaffold_21	retained_exon	2953085	2953148	+	asmbl_28430	none	STRG.23920.2	1	STRG.23920.1,blat.proc3825176.chain_1159	2
scaffold_7	alt_acceptor	8288243	8288244	-	asmbl_50989	none	STRG.9063.1,blat.proc3825152.chain_1449	2	STRG.9063.2,Trinity_GG_5113_c0_g1_i2,blat.proc3825152.chain_1448	3
scaffold_17	starts_in_intron	13085111	13085111	+	asmbl_19315	none	Trinity_GG_28752_c0_g1_i6	1	STRG.20804.1,blat.proc3825174.chain_1718,blat.proc3825174.chain_1721,blat.proc3825174.chain_1722,blat.proc3825174.chain_1725,blat.proc3825174.chain_1727	6
scaffold_21	alternate_exon	2602801	2602849	+	asmbl_28410	none	blat.proc3825176.chain_1108	1	STRG.23893.1,blat.proc3825176.chain_1109	2
scaffold_13	alternate_exon	4457502	4457824	+	asmbl_10797	none	STRG.15770.3,blat.proc3825172.chain_511	2	Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_512	2
scaffold_16	alternate_exon	1243461	1249035	-	asmbl_16939,asmbl_16940,asmbl_16941	none	STRG.19087.1,STRG.19087.2,blat.proc3825158.chain_222,blat.proc3825158.chain_224,blat.proc3825158.chain_225	5	Trinity_GG_10709_c1_g1_i1,blat.proc3825158.chain_227	2
scaffold_28	alt_acceptor	1648050	1648051	-	asmbl_37999	none	STRG.29354.2	1	STRG.29354.1,blat.proc3825162.chain_2512	2
scaffold_6	ends_in_intron	2698010	2698010	-	asmbl_48151	none	blat.proc3825150.chain_3386	1	STRG.7265.1,blat.proc3825150.chain_3385	2
scaffold_1	retained_exon	7284196	7284224	-	asmbl_423	none	STRG.519.2,blat.proc3825148.chain_446	2	STRG.519.1,blat.proc3825148.chain_447	2
scaffold_4	alt_acceptor	3269890	3269891	+	asmbl_41163,asmbl_41166	none	STRG.4255.2,blat.proc3825166.chain_625	2	STRG.4255.1,blat.proc3825166.chain_626,blat.proc3825166.chain_627,blat.proc3825166.chain_628	4
scaffold_6	spliced_intron	8582069	8582179	+	asmbl_47155,asmbl_47156	none	STRG.7738.4,blat.proc3825168.chain_176	2	STRG.7738.2,STRG.7738.3	2
scaffold_17	starts_in_intron	8828862	8828862	-	asmbl_18121	none	blat.proc3825158.chain_1520	1	STRG.20493.1,blat.proc3825158.chain_1518	2
scaffold_13	spliced_intron	12104495	12104907	+	asmbl_11331,asmbl_11333	none	STRG.16347.1,Trinity_GG_26304_c0_g1_i1,Trinity_GG_26304_c0_g1_i2,blat.proc3825172.chain_1150,blat.proc3825172.chain_1152	5	STRG.16347.2,Trinity_GG_26304_c0_g1_i4,blat.proc3825172.chain_1149	3
scaffold_28	alt_acceptor	3815621	3815622	-	asmbl_38173,asmbl_38174,asmbl_38175	none	STRG.29582.1,blat.proc3825162.chain_2742,blat.proc3825162.chain_2743,blat.proc3825162.chain_2744	4	STRG.29582.3	1
scaffold_3	retained_intron	10276182	10276586	+	asmbl_40252	none	blat.proc3825164.chain_3735	1	STRG.3467.1,STRG.3467.3,Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3727,blat.proc3825164.chain_3728,blat.proc3825164.chain_3730,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734,blat.proc3825164.chain_3736	9
scaffold_21	retained_intron	11346223	11346264	-	asmbl_28122,asmbl_28123	none	STRG.24614.2,STRG.24614.3	2	STRG.24614.4	1
scaffold_13	starts_in_intron	8355742	8355742	+	asmbl_11127	none	Trinity_GG_26184_c0_g1_i5,blat.proc3825172.chain_918	2	STRG.16130.1,STRG.16130.2,STRG.16130.3,blat.proc3825172.chain_915,blat.proc3825172.chain_917,blat.proc3825172.chain_919	6
scaffold_28	starts_in_intron	2267463	2267463	-	asmbl_38028	none	blat.proc3825162.chain_2583	1	STRG.29401.1,STRG.29401.2,STRG.29401.3,blat.proc3825162.chain_2575,blat.proc3825162.chain_2576,blat.proc3825162.chain_2577,blat.proc3825162.chain_2578,blat.proc3825162.chain_2579	8
scaffold_27	alt_acceptor	9431799	9431800	-	asmbl_37139,asmbl_37140	none	STRG.29189.1,STRG.29189.3,blat.proc3825162.chain_2344,blat.proc3825162.chain_2345	4	STRG.29189.2	1
scaffold_9	alt_acceptor	15590630	15590631	+	asmbl_54579,asmbl_54580,asmbl_54582,asmbl_54583	none	STRG.11750.1,STRG.11750.2,blat.proc3825170.chain_530,blat.proc3825170.chain_531,blat.proc3825170.chain_533	5	blat.proc3825170.chain_532	1
scaffold_5	starts_in_intron	19371555	19371555	-	asmbl_44906,asmbl_44908	none	STRG.7039.2,STRG.7039.3,Trinity_GG_3919_c0_g1_i3,blat.proc3825150.chain_3149	4	STRG.7039.1,Trinity_GG_3919_c0_g1_i1,blat.proc3825150.chain_3148	3
scaffold_25	alt_donor	1232085	1232086	+	asmbl_33369	none	STRG.27169.2,blat.proc3825178.chain_324	2	STRG.27169.1,blat.proc3825178.chain_325	2
scaffold_6	alt_donor	13919127	13919128	-	asmbl_48954	none	STRG.8139.2,blat.proc3825152.chain_569	2	STRG.8139.4	1
scaffold_24	retained_intron	9128917	9129415	+	asmbl_32521	none	STRG.26940.1,blat.proc3825178.chain_142	2	STRG.26940.2,blat.proc3825178.chain_143	2
scaffold_14	alt_acceptor	8610948	8610949	-	asmbl_13328	none	STRG.17296.2,blat.proc3825156.chain_2120	2	STRG.17296.1,blat.proc3825156.chain_2122	2
scaffold_5	retained_intron	10853790	10853941	+	asmbl_45704	none	blat.proc3825166.chain_2521	1	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2523,blat.proc3825166.chain_2525	5
scaffold_12	alt_acceptor	12451996	12451997	+	asmbl_8004	none	STRG.15151.2	1	STRG.15151.1,STRG.15151.3	2
scaffold_4	alt_donor	7087758	7087759	+	asmbl_41458	none	STRG.4547.4	1	STRG.4547.1,STRG.4547.2,STRG.4547.3,blat.proc3825166.chain_1039,blat.proc3825166.chain_1040	5
scaffold_23	skipped_exon	2220486	2222192	-	asmbl_30712,asmbl_30714,asmbl_30716	none	STRG.25698.1,STRG.25698.2,STRG.25698.3	3	STRG.25698.5	1
scaffold_3	alt_donor	15745603	15745604	-	asmbl_39438,asmbl_39440	none	STRG.3851.1,STRG.3851.2,blat.proc3825148.chain_3707	3	STRG.3851.3,blat.proc3825148.chain_3706	2
scaffold_9	skipped_exon	9706825	9707760	+	asmbl_54231	none	Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_146	2	STRG.11349.2,STRG.11349.6,blat.proc3825170.chain_143	3
scaffold_4	alternate_exon	4117821	4119271	+	asmbl_41235	none	STRG.4328.1	1	STRG.4328.2	1
scaffold_103	alt_donor	6807	6808	+	asmbl_5235	none	STRG.30142.1,blat.proc3825178.chain_3265	2	STRG.30142.2	1
scaffold_15	retained_exon	11141906	11141941	-	asmbl_14482,asmbl_14484,asmbl_14486	none	blat.proc3825156.chain_3380,blat.proc3825156.chain_3382,blat.proc3825156.chain_3384	3	blat.proc3825156.chain_3383,blat.proc3825156.chain_3385,blat.proc3825156.chain_3386	3
scaffold_4	alt_acceptor	12716790	12716791	-	asmbl_42954	none	STRG.4911.1,blat.proc3825150.chain_997	2	STRG.4911.2,blat.proc3825150.chain_998	2
scaffold_7	starts_in_intron	8486094	8486094	+	asmbl_49998	none	Trinity_GG_22339_c0_g1_i2,blat.proc3825168.chain_1578	2	STRG.9073.1	1
scaffold_3	spliced_intron	6661802	6662072	+	asmbl_40118	none	STRG.3296.1	1	STRG.3296.2,Trinity_GG_19179_c1_g2_i1,blat.proc3825164.chain_3554	3
scaffold_25	retained_intron	5827048	5827635	-	asmbl_34295,asmbl_34297	none	blat.proc3825162.chain_874,blat.proc3825162.chain_881	2	STRG.27479.1,STRG.27479.2,STRG.27479.4,blat.proc3825162.chain_876,blat.proc3825162.chain_877	5
scaffold_17	spliced_intron	10050958	10051155	+	asmbl_19160,asmbl_19161	none	STRG.20618.2,STRG.20618.3,blat.proc3825174.chain_1497	3	STRG.20618.1,Trinity_GG_28608_c0_g1_i4,blat.proc3825174.chain_1499,blat.proc3825174.chain_1500	4
scaffold_3	spliced_intron	19884864	19885175	-	asmbl_39671,asmbl_39672	none	STRG.4100.1,Trinity_GG_2243_c1_g1_i1,Trinity_GG_2243_c1_g1_i7,blat.proc3825150.chain_244,blat.proc3825150.chain_246	5	Trinity_GG_2243_c1_g1_i6,blat.proc3825150.chain_247,blat.proc3825150.chain_249	3
scaffold_10	retained_intron	9041499	9041894	+	asmbl_3359	none	Trinity_GG_24291_c0_g1_i2,blat.proc3825170.chain_1271	2	STRG.12653.1,blat.proc3825170.chain_1272,blat.proc3825170.chain_1273	3
scaffold_23	alt_donor	7982619	7982620	+	asmbl_31746	none	STRG.26109.1	1	STRG.26109.2,blat.proc3825176.chain_3063	2
scaffold_1	retained_intron	18485288	18485991	-	asmbl_1113,asmbl_1114	none	STRG.1298.1,STRG.1298.3	2	STRG.1298.5,blat.proc3825148.chain_1320	2
scaffold_15	skipped_exon	13558874	13561252	-	asmbl_14640,asmbl_14641	none	STRG.18786.1,STRG.18786.2,blat.proc3825156.chain_3629,blat.proc3825156.chain_3630	4	STRG.18786.3	1
scaffold_3	retained_intron	17144659	17145212	+	asmbl_40654,asmbl_40655	none	STRG.3958.2,STRG.3958.3,Trinity_GG_19534_c0_g1_i5,Trinity_GG_19534_c0_g2_i1,blat.proc3825166.chain_457,blat.proc3825166.chain_459	6	STRG.3958.1,STRG.3958.4,blat.proc3825166.chain_458,blat.proc3825166.chain_460	4
scaffold_5	retained_intron	16258346	16258731	+	asmbl_46068	none	Trinity_GG_21027_c0_g1_i1	1	STRG.6819.1,Trinity_GG_21027_c0_g1_i2	2
scaffold_18	alt_acceptor	4615522	4615523	+	asmbl_20537	none	STRG.21254.1,blat.proc3825174.chain_2210,blat.proc3825174.chain_2211	3	STRG.21254.2	1
scaffold_6	alt_donor	6869228	6869229	+	asmbl_47012	none	STRG.7592.2,blat.proc3825166.chain_3679	2	blat.proc3825166.chain_3681	1
scaffold_7	ends_in_intron	15271137	15271137	+	asmbl_50432	none	STRG.9546.2	1	STRG.9546.1,STRG.9546.3,STRG.9546.4,blat.proc3825168.chain_2120,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2125	7
scaffold_18	alt_acceptor	5905545	5905546	-	asmbl_19875	none	STRG.21337.1,Trinity_GG_11944_c1_g1_i1,blat.proc3825158.chain_2263	3	STRG.21337.2,STRG.21337.3	2
scaffold_10	alternate_exon	770326	784738	+	asmbl_2870	none	blat.proc3825170.chain_654	1	STRG.11971.8	1
scaffold_18	retained_intron	3789471	3789712	-	asmbl_19771,asmbl_19772,asmbl_19775,asmbl_19776,asmbl_19778	none	STRG.21197.1,STRG.21197.3,blat.proc3825158.chain_2171,blat.proc3825158.chain_2173,blat.proc3825158.chain_2177,blat.proc3825158.chain_2178,blat.proc3825158.chain_2179	7	STRG.21197.2,blat.proc3825158.chain_2176	2
scaffold_22	retained_intron	497867	498164	+	asmbl_29860	none	STRG.24697.2	1	STRG.24697.1	1
scaffold_13	alternate_exon	903026	903690	-	asmbl_9375	none	STRG.15470.2,Trinity_GG_8651_c0_g1_i6,blat.proc3825156.chain_270	3	STRG.15470.1,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271,blat.proc3825156.chain_272	10
scaffold_23	alternate_exon	806025	808238	-	asmbl_30612	none	blat.proc3825160.chain_2754	1	Trinity_GG_14309_c0_g1_i7,blat.proc3825160.chain_2756	2
scaffold_28	starts_in_intron	7272840	7272840	-	asmbl_38387	none	STRG.29796.2	1	STRG.29796.3,STRG.29796.4	2
scaffold_28	ends_in_intron	3637143	3637143	+	asmbl_37489	none	blat.proc3825178.chain_2776	1	STRG.29576.1,blat.proc3825178.chain_2775	2
scaffold_3	skipped_exon	10275118	10275967	+	asmbl_40247,asmbl_40250,asmbl_40253,asmbl_40256,asmbl_40257	none	STRG.3467.1,STRG.3467.3,blat.proc3825164.chain_3727,blat.proc3825164.chain_3728,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734,blat.proc3825164.chain_3736	7	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3
scaffold_19	alternate_exon	8174401	8177953	-	asmbl_22279	none	STRG.22266.1,blat.proc3825158.chain_3074	2	STRG.22266.2,Trinity_GG_12410_c0_g1_i1,blat.proc3825158.chain_3073	3
scaffold_17	alt_donor	11590100	11590101	-	asmbl_18287	none	blat.proc3825158.chain_1739	1	STRG.20705.1,blat.proc3825158.chain_1738	2
scaffold_26	retained_intron	3651416	3651580	-	asmbl_35499	none	STRG.28045.1,blat.proc3825162.chain_1283	2	STRG.28045.2,blat.proc3825162.chain_1282	2
scaffold_1	retained_intron	6972741	6972914	+	asmbl_1870	none	blat.proc3825164.chain_647	1	STRG.490.1,blat.proc3825164.chain_645,blat.proc3825164.chain_646,blat.proc3825164.chain_648	4
scaffold_26	retained_exon	1994577	1994623	+	asmbl_34729	none	STRG.27942.1	1	blat.proc3825178.chain_995	1
scaffold_22	retained_intron	6513438	6513461	+	asmbl_30115	none	STRG.24989.1,Trinity_GG_31132_c0_g1_i2,blat.proc3825176.chain_2095	3	STRG.24989.2	1
scaffold_9	alt_acceptor	9706999	9707000	+	asmbl_54237,asmbl_54238	none	STRG.11349.6,blat.proc3825170.chain_139	2	STRG.11349.1,STRG.11349.2,Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_140,blat.proc3825170.chain_143,blat.proc3825170.chain_144,blat.proc3825170.chain_146	7
scaffold_12	retained_exon	2926610	2926726	-	asmbl_8332	none	STRG.14526.1	1	STRG.14526.3	1
scaffold_566	alt_acceptor	4023	4024	+	asmbl_46581	none	blat.proc3825172.chain_735	1	STRG.30397.1	1
scaffold_13	starts_in_intron	15362869	15362869	+	asmbl_11495	none	STRG.16579.7	1	STRG.16579.1,Trinity_GG_26428_c0_g1_i1,Trinity_GG_26428_c0_g1_i3	3
scaffold_8	ends_in_intron	18433264	18433264	+	asmbl_53555	none	Trinity_GG_23267_c0_g2_i1	1	STRG.10742.1,STRG.10742.2,blat.proc3825168.chain_3265	3
scaffold_27	alt_acceptor	1551365	1551366	+	asmbl_36025	none	STRG.28642.2	1	STRG.28642.1,Trinity_GG_33147_c0_g1_i4,Trinity_GG_33147_c0_g1_i5,blat.proc3825178.chain_1740,blat.proc3825178.chain_1741	5
scaffold_21	retained_intron	6818680	6818878	+	asmbl_28701,asmbl_28703,asmbl_28705	none	STRG.24217.1,Trinity_GG_30700_c0_g1_i3,blat.proc3825176.chain_1368,blat.proc3825176.chain_1370,blat.proc3825176.chain_1372	5	STRG.24217.2,blat.proc3825176.chain_1369,blat.proc3825176.chain_1371	3
scaffold_5	retained_intron	189929	189960	+	asmbl_45086	none	STRG.5587.2,Trinity_GG_20359_c4_g1_i3,Trinity_GG_20359_c4_g1_i4,Trinity_GG_20359_c4_g1_i5,blat.proc3825166.chain_1850,blat.proc3825166.chain_1853	6	STRG.5587.3,STRG.5587.4,STRG.5587.5	3
scaffold_4	retained_intron	12571017	12571255	-	asmbl_42932	none	blat.proc3825150.chain_1085	1	STRG.4898.1,blat.proc3825150.chain_1087	2
scaffold_7	retained_intron	11413023	11413205	+	asmbl_50175	none	blat.proc3825168.chain_1793	1	STRG.9288.3,Trinity_GG_22465_c0_g1_i4,blat.proc3825168.chain_1794,blat.proc3825168.chain_1795	4
scaffold_12	alternate_exon	8950250	8950584	-	asmbl_8635	none	STRG.14901.1,blat.proc3825154.chain_3400	2	STRG.14901.2	1
scaffold_1	retained_exon	11174137	11174210	+	asmbl_2078	none	STRG.747.5,blat.proc3825164.chain_912	2	STRG.747.3,blat.proc3825164.chain_914	2
scaffold_14	alt_acceptor	405491	405492	+	asmbl_11749,asmbl_11756	none	STRG.16734.5,blat.proc3825172.chain_1515,blat.proc3825172.chain_1516	3	STRG.16734.2,STRG.16734.3,STRG.16734.4,blat.proc3825172.chain_1502,blat.proc3825172.chain_1508	5
scaffold_9	retained_intron	16569591	16569821	+	asmbl_54599,asmbl_54602	none	Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_612,blat.proc3825170.chain_616	4	Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_614	2
scaffold_26	retained_intron	9316247	9316445	+	asmbl_35216,asmbl_35219	none	blat.proc3825178.chain_1611,blat.proc3825178.chain_1615	2	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1612,blat.proc3825178.chain_1614,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	7
scaffold_2	alt_acceptor	17159517	17159518	+	asmbl_25160	none	STRG.2617.2,blat.proc3825164.chain_2919	2	STRG.2617.1	1
scaffold_6	alt_donor	10531211	10531212	+	asmbl_47285	none	STRG.7889.1	1	blat.proc3825168.chain_336	1
scaffold_2	spliced_intron	7408928	7409546	-	asmbl_23253,asmbl_23255	none	STRG.2065.4,Trinity_GG_1101_c0_g1_i5,blat.proc3825148.chain_1986	3	STRG.2065.1,STRG.2065.5,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1983,blat.proc3825148.chain_1984,blat.proc3825148.chain_1985	7
scaffold_3	retained_exon	10628153	10628321	+	asmbl_40282	none	STRG.3513.7	1	STRG.3513.3,blat.proc3825164.chain_3682	2
scaffold_3	starts_in_intron	10273427	10273427	+	asmbl_40251,asmbl_40257	none	blat.proc3825164.chain_3727,blat.proc3825164.chain_3733	2	STRG.3467.1,STRG.3467.2,STRG.3467.3,blat.proc3825164.chain_3728,blat.proc3825164.chain_3731,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734,blat.proc3825164.chain_3736	8
scaffold_6	retained_intron	4319469	4319899	+	asmbl_46877,asmbl_46879,asmbl_46881,asmbl_46882	none	STRG.7409.1,Trinity_GG_21371_c0_g1_i7,blat.proc3825166.chain_3611,blat.proc3825166.chain_3612,blat.proc3825166.chain_3613,blat.proc3825166.chain_3615	6	STRG.7409.3	1
scaffold_17	spliced_intron	13196891	13197082	-	asmbl_18360,asmbl_18361	none	STRG.20817.1,STRG.20817.2,blat.proc3825158.chain_1827,blat.proc3825158.chain_1830,blat.proc3825174.chain_1690	5	blat.proc3825158.chain_1826	1
scaffold_1	alt_donor	907586	907587	-	asmbl_36	none	STRG.48.1	1	STRG.48.3	1
scaffold_2	ends_in_intron	15267762	15267762	+	asmbl_24998	none	blat.proc3825164.chain_2624	1	STRG.2485.1,STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2605,blat.proc3825164.chain_2606,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	10
scaffold_22	spliced_intron	11402361	11402463	+	asmbl_30379	none	STRG.25474.2	1	STRG.25474.1,Trinity_GG_31374_c2_g1_i1,blat.proc3825176.chain_2469	3
scaffold_4	retained_intron	4449410	4449595	+	asmbl_41274	none	Trinity_GG_19745_c0_g1_i2,blat.proc3825166.chain_827	2	STRG.4354.1,Trinity_GG_19745_c0_g1_i1,blat.proc3825166.chain_828	3
scaffold_14	retained_intron	8295304	8295419	-	asmbl_13282,asmbl_13283	none	STRG.17254.1,blat.proc3825156.chain_2067,blat.proc3825156.chain_2068	3	blat.proc3825156.chain_2069	1
scaffold_23	retained_intron	5732593	5732880	+	asmbl_31594,asmbl_31595	none	STRG.25943.2,Trinity_GG_31589_c0_g1_i1,Trinity_GG_31589_c0_g1_i3,blat.proc3825176.chain_2812,blat.proc3825176.chain_2813	5	STRG.25943.1,Trinity_GG_31589_c0_g1_i2,blat.proc3825176.chain_2811	3
scaffold_17	spliced_intron	10050035	10050204	+	asmbl_19165	none	blat.proc3825174.chain_1500	1	STRG.20618.3,Trinity_GG_28608_c0_g1_i4,blat.proc3825174.chain_1499	3
scaffold_17	spliced_intron	14325639	14325766	-	asmbl_18422	none	STRG.20906.1,blat.proc3825158.chain_1885	2	blat.proc3825158.chain_1884	1
scaffold_8	spliced_intron	16499324	16499685	-	asmbl_52420	none	STRG.10629.5	1	STRG.10629.1,STRG.10629.2,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2939	5
scaffold_2	starts_in_intron	2292262	2292262	-	asmbl_22881	none	blat.proc3825148.chain_1598	1	STRG.1669.1,STRG.1669.2	2
scaffold_15	ends_in_intron	15915391	15915391	+	asmbl_15842,asmbl_15843	none	Trinity_GG_27681_c0_g1_i1,Trinity_GG_27681_c0_g1_i2,blat.proc3825172.chain_3549,blat.proc3825172.chain_3550	4	STRG.18976.1	1
scaffold_285	spliced_intron	1629	1871	+	asmbl_38623	none	blat.proc3825178.chain_3361	1	STRG.30262.2,blat.proc3825178.chain_3356	2
scaffold_13	retained_intron	8912349	8912432	+	asmbl_11159	none	STRG.16165.4,Trinity_GG_26201_c0_g1_i1,blat.proc3825172.chain_958	3	STRG.16165.1,STRG.16165.2,STRG.16165.3,Trinity_GG_26201_c0_g1_i6,blat.proc3825172.chain_954,blat.proc3825172.chain_955,blat.proc3825172.chain_957,blat.proc3825172.chain_959	8
scaffold_21	alternate_exon	2483730	2483800	-	asmbl_27466	none	STRG.23873.2	1	STRG.23873.1,STRG.23873.3,STRG.23873.4,Trinity_GG_13318_c0_g1_i2,blat.proc3825160.chain_1023	5
scaffold_20	alt_donor	11287202	11287203	+	asmbl_27026,asmbl_27027	none	STRG.23634.2,STRG.23634.3	2	STRG.23634.1,Trinity_GG_30350_c0_g1_i2,blat.proc3825176.chain_746,blat.proc3825176.chain_747	4
scaffold_9	alt_donor	2801676	2801677	+	asmbl_53866	none	blat.proc3825168.chain_3428	1	STRG.10918.1,STRG.10918.2,STRG.10918.4,STRG.10918.5,STRG.10918.6,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3430,blat.proc3825168.chain_3431	8
scaffold_13	ends_in_intron	3052	3052	+	asmbl_10454	none	blat.proc3825172.chain_140	1	STRG.15424.1,STRG.15424.2,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i6,blat.proc3825172.chain_134,blat.proc3825172.chain_141	6
scaffold_2	starts_in_intron	13343721	13343721	-	asmbl_23499	none	blat.proc3825148.chain_2349	1	STRG.2356.1,blat.proc3825148.chain_2348	2
scaffold_10	retained_intron	11486695	11488591	+	asmbl_3461	none	STRG.12802.2,Trinity_GG_24377_c0_g1_i3,blat.proc3825170.chain_1413	3	STRG.12802.1	1
scaffold_13	alternate_exon	8098891	8100007	+	asmbl_11097	none	STRG.16098.1,Trinity_GG_26152_c0_g1_i1,Trinity_GG_26152_c2_g1_i1,blat.proc3825172.chain_852,blat.proc3825172.chain_854	5	STRG.16098.2,blat.proc3825172.chain_853	2
scaffold_1	alt_donor	12489339	12489340	+	asmbl_2229	none	STRG.862.3	1	STRG.862.2,Trinity_GG_17849_c0_g1_i2,blat.proc3825164.chain_1053	3
scaffold_17	alt_acceptor	10123263	10123264	+	asmbl_19180,asmbl_19182	none	STRG.20628.1,STRG.20628.3	2	STRG.20628.2	1
scaffold_23	alt_acceptor	7634794	7634795	-	asmbl_31043	none	STRG.26076.3	1	STRG.26076.1,STRG.26076.2,blat.proc3825160.chain_3258,blat.proc3825160.chain_3259	4
scaffold_12	skipped_exon	1055100	1056753	+	asmbl_7454,asmbl_7455	none	STRG.14447.1,STRG.14447.4,blat.proc3825170.chain_2948	3	STRG.14447.2,STRG.14447.3	2
scaffold_27	alt_donor	9435766	9435767	-	asmbl_37138	none	STRG.29189.4,Trinity_GG_16335_c0_g1_i3,blat.proc3825162.chain_2346	3	STRG.29189.1,blat.proc3825162.chain_2345	2
scaffold_14	skipped_exon	15584170	15585636	+	asmbl_12628	none	STRG.17811.3,blat.proc3825172.chain_2554	2	STRG.17811.1,STRG.17811.2,STRG.17811.5,STRG.17811.6,STRG.17811.7	5
scaffold_10	alt_acceptor	5684921	5684922	+	asmbl_3193	none	STRG.12396.3	1	STRG.12396.1,STRG.12396.2,blat.proc3825170.chain_1001	3
scaffold_6	skipped_exon	8172803	8173560	-	asmbl_48542	none	blat.proc3825152.chain_93	1	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_91,blat.proc3825152.chain_92	5
scaffold_8	spliced_intron	11275623	11276066	+	asmbl_53209,asmbl_53210,asmbl_53211,asmbl_53213	none	STRG.10346.1,STRG.10346.2,STRG.10346.3,STRG.10346.4,Trinity_GG_23069_c0_g1_i1,Trinity_GG_23069_c0_g1_i2,blat.proc3825168.chain_2911,blat.proc3825168.chain_2912,blat.proc3825168.chain_2914	9	Trinity_GG_23069_c0_g1_i4,blat.proc3825168.chain_2913	2
scaffold_21	retained_intron	1151006	1151165	+	asmbl_28329	none	STRG.23790.1,blat.proc3825176.chain_1009	2	STRG.23790.2,Trinity_GG_30494_c0_g1_i2,blat.proc3825176.chain_1008	3
scaffold_2	spliced_intron	15267111	15267282	+	asmbl_24996,asmbl_24997,asmbl_25000,asmbl_25001,asmbl_25003,asmbl_25004,asmbl_25005,asmbl_25006	none	STRG.2485.1,STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	10	blat.proc3825164.chain_2603,blat.proc3825164.chain_2606	2
scaffold_17	retained_intron	1512991	1513501	-	asmbl_17720	none	STRG.19991.2,blat.proc3825158.chain_1057	2	STRG.19991.1,blat.proc3825158.chain_1056	2
scaffold_10	alternate_exon	11106737	11106831	+	asmbl_3452	none	STRG.12779.2	1	STRG.12779.1,blat.proc3825170.chain_1378,blat.proc3825170.chain_1379	3
scaffold_10	spliced_intron	2752450	2753447	+	asmbl_3008	none	blat.proc3825170.chain_860	1	STRG.12094.1,Trinity_GG_24049_c0_g1_i3,blat.proc3825170.chain_859,blat.proc3825170.chain_861	4
scaffold_12	retained_exon	1056754	1056810	+	asmbl_7454,asmbl_7455	none	STRG.14447.1,STRG.14447.4,blat.proc3825170.chain_2948	3	STRG.14447.3	1
scaffold_2	ends_in_intron	10878938	10878938	+	asmbl_24737	none	blat.proc3825164.chain_2444	1	STRG.2245.1,Trinity_GG_18581_c0_g1_i6,blat.proc3825164.chain_2437,blat.proc3825164.chain_2438	4
scaffold_22	alt_donor	6927222	6927223	-	asmbl_29347	none	STRG.25011.2,blat.proc3825160.chain_2100	2	STRG.25011.1,blat.proc3825160.chain_2101	2
scaffold_25	alt_donor	3550708	3550709	-	asmbl_34134	none	STRG.27301.1,blat.proc3825162.chain_667	2	STRG.27301.2	1
scaffold_21	spliced_intron	233295	233468	-	asmbl_27279	none	STRG.23731.1,blat.proc3825160.chain_839	2	blat.proc3825160.chain_838	1
scaffold_21	alt_donor	3015285	3015286	+	asmbl_28433,asmbl_28435,asmbl_28437	none	STRG.23928.2,blat.proc3825176.chain_1102,blat.proc3825176.chain_1103,blat.proc3825176.chain_1105	4	STRG.23928.1,blat.proc3825176.chain_1106	2
scaffold_2	alt_acceptor	7782466	7782467	+	asmbl_24575	none	STRG.2075.5	1	blat.proc3825164.chain_2228	1
scaffold_14	starts_in_intron	10778801	10778801	+	asmbl_12348	none	blat.proc3825172.chain_2177	1	STRG.17435.1,blat.proc3825172.chain_2178	2
scaffold_18	spliced_intron	7867463	7867646	+	asmbl_20799,asmbl_20800,asmbl_20801,asmbl_20802,asmbl_20803,asmbl_20804,asmbl_20808	none	STRG.21488.1,STRG.21488.2,STRG.21488.3,STRG.21488.5,Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i16,Trinity_GG_29146_c0_g1_i18,Trinity_GG_29146_c0_g1_i3,blat.proc3825174.chain_2450,blat.proc3825174.chain_2451,blat.proc3825174.chain_2452,blat.proc3825174.chain_2455,blat.proc3825174.chain_2456,blat.proc3825174.chain_2458,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	16	STRG.21488.4,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i11,blat.proc3825174.chain_2453	5
scaffold_9	retained_exon	11465249	11465302	-	asmbl_55291	none	STRG.11462.2	1	STRG.11462.1	1
scaffold_3	skipped_exon	935338	937335	-	asmbl_38686	none	STRG.2916.1	1	blat.proc3825148.chain_2836,blat.proc3825148.chain_2837,blat.proc3825148.chain_2838	3
scaffold_10	skipped_exon	5392562	5395407	-	asmbl_4362	none	blat.proc3825154.chain_935	1	STRG.12366.1,STRG.12366.2,blat.proc3825154.chain_934,blat.proc3825154.chain_937	4
scaffold_28	alt_acceptor	8411412	8411413	+	asmbl_37743	none	STRG.29917.1,Trinity_GG_33870_c0_g1_i1,blat.proc3825178.chain_3061	3	STRG.29917.2	1
scaffold_15	alt_donor	14633943	14633944	-	asmbl_14733	none	STRG.18877.2,blat.proc3825156.chain_3749	2	STRG.18877.1,blat.proc3825156.chain_3750	2
scaffold_17	alt_donor	1732743	1732744	-	asmbl_17731	none	STRG.20008.2,blat.proc3825158.chain_1002	2	STRG.20008.1,blat.proc3825158.chain_1001	2
scaffold_5	retained_intron	188746	188784	+	asmbl_45087,asmbl_45088,asmbl_45089,asmbl_45090	none	STRG.5587.1,STRG.5587.3,STRG.5587.4,STRG.5587.5,Trinity_GG_20359_c0_g1_i2,blat.proc3825166.chain_1844	6	STRG.5587.2	1
scaffold_25	alt_donor	8700438	8700439	-	asmbl_34462	none	STRG.27695.3,blat.proc3825162.chain_1023	2	STRG.27695.2,STRG.27695.5,blat.proc3825162.chain_1020	3
scaffold_25	ends_in_intron	9118041	9118041	+	asmbl_33785	none	STRG.27725.1,blat.proc3825178.chain_865	2	STRG.27725.3,blat.proc3825178.chain_863	2
scaffold_21	alt_donor	2486993	2486994	+	asmbl_28392	none	STRG.23875.1,blat.proc3825176.chain_1065	2	STRG.23875.2	1
scaffold_10	alt_acceptor	8897245	8897246	-	asmbl_4626,asmbl_4632	none	blat.proc3825154.chain_1262,blat.proc3825154.chain_1272	2	STRG.12637.1,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1273	7
scaffold_1	ends_in_intron	16520707	16520707	+	asmbl_2487	none	Trinity_GG_18009_c0_g1_i2	1	blat.proc3825164.chain_1328	1
scaffold_8	skipped_exon	9128050	9128801	-	asmbl_52009,asmbl_52011,asmbl_52012	none	STRG.10172.2,blat.proc3825152.chain_2387,blat.proc3825152.chain_2389	3	STRG.10172.1,STRG.10172.3,STRG.10172.4	3
scaffold_14	spliced_intron	12351231	12351424	+	asmbl_12423,asmbl_12425	none	STRG.17576.1,STRG.17576.2,blat.proc3825172.chain_2273	3	blat.proc3825172.chain_2272	1
scaffold_10	starts_in_intron	8492455	8492455	-	asmbl_4596	none	STRG.12607.2	1	STRG.12607.1,blat.proc3825154.chain_1213,blat.proc3825154.chain_1214	3
scaffold_1	retained_intron	7290185	7290421	+	asmbl_1895,asmbl_1896	none	STRG.520.3,Trinity_GG_17630_c0_g1_i1,Trinity_GG_17630_c0_g1_i2,blat.proc3825164.chain_641,blat.proc3825164.chain_642	5	STRG.520.1,Trinity_GG_17630_c0_g1_i5,blat.proc3825164.chain_639	3
scaffold_28	alternate_exon	1704278	1704305	-	asmbl_38010	none	STRG.29367.3	1	STRG.29367.1,STRG.29367.2,blat.proc3825162.chain_2543	3
scaffold_8	ends_in_intron	10240525	10240525	+	asmbl_53164	none	blat.proc3825168.chain_2732	1	STRG.10282.1,STRG.10282.2,STRG.10282.3,blat.proc3825168.chain_2729,blat.proc3825168.chain_2730,blat.proc3825168.chain_2731,blat.proc3825168.chain_2733	7
scaffold_16	spliced_intron	11596511	11596915	-	asmbl_17353	none	STRG.19676.2	1	STRG.19676.1,blat.proc3825158.chain_760,blat.proc3825158.chain_761	3
scaffold_5	alternate_exon	7027730	7027756	+	asmbl_45473	none	STRG.6116.1	1	STRG.6116.2	1
scaffold_13	alt_acceptor	16433513	16433514	+	asmbl_11575	none	STRG.16695.1	1	STRG.16695.2,blat.proc3825172.chain_1429	2
scaffold_16	spliced_intron	8581350	8581577	+	asmbl_16407,asmbl_16408,asmbl_16411	none	STRG.19485.1,STRG.19485.2,blat.proc3825174.chain_353,blat.proc3825174.chain_355,blat.proc3825174.chain_357	5	blat.proc3825174.chain_356	1
scaffold_1	starts_in_intron	13889556	13889556	+	asmbl_2327	none	blat.proc3825164.chain_1170	1	STRG.997.1,STRG.997.2,STRG.997.3,STRG.997.4,blat.proc3825164.chain_1165,blat.proc3825164.chain_1166,blat.proc3825164.chain_1167,blat.proc3825164.chain_1168,blat.proc3825164.chain_1169	9
scaffold_1	spliced_intron	14320593	14321243	+	asmbl_2379,asmbl_2381	none	STRG.1027.1,blat.proc3825164.chain_1222,blat.proc3825164.chain_1223	3	blat.proc3825164.chain_1226	1
scaffold_14	alternate_exon	10716908	10717019	+	asmbl_12345	none	STRG.17426.2	1	STRG.17426.1,Trinity_GG_26881_c0_g1_i1,Trinity_GG_26881_c0_g1_i2,blat.proc3825172.chain_2152,blat.proc3825172.chain_2153	5
scaffold_14	retained_exon	12763044	12763082	-	asmbl_13596,asmbl_13601	none	STRG.17591.1,STRG.17591.4,blat.proc3825156.chain_2479,blat.proc3825156.chain_2480	4	STRG.17591.5,blat.proc3825156.chain_2478	2
scaffold_5	retained_exon	6064795	6064853	+	asmbl_45397,asmbl_45398	none	STRG.6029.1,STRG.6029.2,blat.proc3825166.chain_2269,blat.proc3825166.chain_2270	4	STRG.6029.3	1
scaffold_7	retained_intron	706941	707196	-	asmbl_50690	none	blat.proc3825152.chain_1070	1	STRG.8607.2,STRG.8607.3,Trinity_GG_4922_c0_g1_i3,Trinity_GG_4922_c0_g1_i5,blat.proc3825152.chain_1071,blat.proc3825152.chain_1072,blat.proc3825152.chain_1073	7
scaffold_21	ends_in_intron	702369	702369	-	asmbl_27348	none	Trinity_GG_13243_c0_g1_i1,blat.proc3825160.chain_895	2	STRG.23762.1,STRG.23762.2,Trinity_GG_13243_c0_g1_i2,Trinity_GG_13243_c0_g1_i3,blat.proc3825160.chain_893,blat.proc3825160.chain_894	6
scaffold_9	retained_intron	6717195	6717297	-	asmbl_55070	none	STRG.11187.2	1	STRG.11187.1,STRG.11187.3	2
scaffold_23	retained_intron	2647054	2647286	+	asmbl_31418	none	blat.proc3825176.chain_2707	1	STRG.25734.1,blat.proc3825176.chain_2708	2
scaffold_27	alt_acceptor	6782117	6782118	-	asmbl_37082	none	STRG.29050.3,blat.proc3825162.chain_2278	2	STRG.29050.1,STRG.29050.2,blat.proc3825162.chain_2276,blat.proc3825162.chain_2279	4
scaffold_13	spliced_intron	350724	350855	-	asmbl_9300,asmbl_9301,asmbl_9303,asmbl_9304	none	STRG.15440.1,Trinity_GG_8667_c0_g1_i6,Trinity_GG_8667_c0_g1_i7,Trinity_GG_8667_c0_g1_i9,blat.proc3825156.chain_305,blat.proc3825156.chain_307,blat.proc3825156.chain_310,blat.proc3825156.chain_311	8	Trinity_GG_8667_c0_g1_i11,blat.proc3825156.chain_309	2
scaffold_9	starts_in_intron	3379607	3379607	-	asmbl_54897	none	blat.proc3825152.chain_3196	1	STRG.10947.1,STRG.10947.2,Trinity_GG_6072_c0_g1_i2,Trinity_GG_6072_c0_g1_i4,blat.proc3825152.chain_3195	5
scaffold_13	skipped_exon	6396903	6397368	+	asmbl_10924,asmbl_10928,asmbl_10929	none	STRG.15929.1,STRG.15929.4,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	5	STRG.15929.2,STRG.15929.3,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_654,blat.proc3825172.chain_655	8
scaffold_16	alt_acceptor	3979608	3979609	-	asmbl_17024,asmbl_17025	none	STRG.19215.2,STRG.19215.3	2	STRG.19215.1,blat.proc3825158.chain_345	2
scaffold_18	alt_acceptor	4690049	4690050	+	asmbl_20541	none	STRG.21258.2,blat.proc3825174.chain_2209	2	STRG.21258.1	1
scaffold_1	retained_exon	3503419	3503774	-	asmbl_147,asmbl_149	none	STRG.221.1,blat.proc3825148.chain_213,blat.proc3825148.chain_214	3	STRG.221.2,STRG.221.4,blat.proc3825148.chain_215,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_218,blat.proc3825148.chain_219,blat.proc3825148.chain_220,blat.proc3825148.chain_221	9
scaffold_11	ends_in_intron	8374239	8374239	-	asmbl_6861	none	Trinity_GG_7764_c0_g1_i1,blat.proc3825154.chain_2432	2	STRG.13853.2	1
scaffold_4	alt_acceptor	15111242	15111243	+	asmbl_41927,asmbl_41929	none	STRG.5115.2,blat.proc3825166.chain_1547	2	STRG.5115.1	1
scaffold_18	starts_in_intron	4724408	4724408	-	asmbl_19820	none	blat.proc3825158.chain_2139	1	STRG.21264.1,blat.proc3825158.chain_2140	2
scaffold_2	alternate_exon	14232095	14233427	-	asmbl_23590	none	STRG.2421.1	1	STRG.2421.2	1
scaffold_2	ends_in_intron	11597250	11597250	+	asmbl_24760	none	blat.proc3825164.chain_2383	1	STRG.2268.1,STRG.2268.2,STRG.2268.3,blat.proc3825164.chain_2376,blat.proc3825164.chain_2377,blat.proc3825164.chain_2378,blat.proc3825164.chain_2379,blat.proc3825164.chain_2380,blat.proc3825164.chain_2381,blat.proc3825164.chain_2382	10
scaffold_1	skipped_exon	11054617	11055916	-	asmbl_605	none	STRG.723.3	1	STRG.723.1,STRG.723.2,blat.proc3825148.chain_696,blat.proc3825148.chain_697	4
scaffold_18	alt_acceptor	12400319	12400320	-	asmbl_20142	none	blat.proc3825158.chain_2583	1	STRG.21709.2,STRG.21709.3	2
scaffold_12	alt_donor	10187769	10187770	-	asmbl_8736	none	blat.proc3825154.chain_3518	1	STRG.14994.1,STRG.14994.2,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516,blat.proc3825154.chain_3517	6
scaffold_15	retained_intron	5453993	5454323	-	asmbl_14210,asmbl_14214	none	Trinity_GG_10273_c0_g1_i6,blat.proc3825156.chain_3105,blat.proc3825156.chain_3107	3	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3106	5
scaffold_23	retained_intron	6632892	6633001	+	asmbl_31640	none	blat.proc3825176.chain_2898	1	STRG.26012.1,STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2895,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897	6
scaffold_9	alternate_exon	3922572	3922855	+	asmbl_53934	none	STRG.11014.2	1	STRG.11014.1	1
scaffold_20	alternate_exon	1952027	1952219	-	asmbl_25627	none	blat.proc3825160.chain_32	1	STRG.22935.2	1
scaffold_19	skipped_exon	13233310	13234904	-	asmbl_22609	none	STRG.22653.2,blat.proc3825158.chain_3427	2	STRG.22653.1,blat.proc3825158.chain_3425	2
scaffold_21	alt_acceptor	8008375	8008376	+	asmbl_28778	none	STRG.24337.1	1	STRG.24337.2,STRG.24337.3,blat.proc3825176.chain_1553,blat.proc3825176.chain_1554,blat.proc3825176.chain_1555,blat.proc3825176.chain_1557	6
scaffold_9	ends_in_intron	13301342	13301342	-	asmbl_55426	none	Trinity_GG_6358_c1_g1_i2	1	STRG.11628.1,STRG.11628.2,STRG.11628.3,STRG.11628.4,STRG.11628.5	5
scaffold_5	spliced_intron	9711452	9711983	+	asmbl_45634	none	STRG.6283.2,blat.proc3825166.chain_2495	2	blat.proc3825166.chain_2496	1
scaffold_22	alt_donor	7417363	7417364	-	asmbl_29395	none	STRG.25079.1,blat.proc3825160.chain_2236	2	STRG.25079.2,blat.proc3825160.chain_2234	2
scaffold_3	alternate_exon	16345792	16348986	-	asmbl_39501	none	blat.proc3825150.chain_115	1	Trinity_GG_2173_c3_g1_i1,blat.proc3825150.chain_121	2
scaffold_2	retained_intron	19892061	19892133	-	asmbl_23877	none	blat.proc3825148.chain_2765	1	STRG.2845.1	1
scaffold_15	ends_in_intron	12619747	12619747	+	asmbl_15590	none	Trinity_GG_27593_c0_g1_i2,blat.proc3825172.chain_3367	2	STRG.18717.1,Trinity_GG_27593_c0_g1_i1,blat.proc3825172.chain_3366	3
scaffold_13	ends_in_intron	9251164	9251164	+	asmbl_11187	none	blat.proc3825172.chain_881	1	STRG.16187.1,blat.proc3825172.chain_879,blat.proc3825172.chain_880	3
scaffold_11	retained_intron	224369	224543	-	asmbl_6386	none	STRG.13262.1	1	STRG.13262.2	1
scaffold_20	alternate_exon	787131	787533	+	asmbl_26378	none	STRG.22782.1,blat.proc3825174.chain_3698	2	blat.proc3825174.chain_3697	1
scaffold_19	spliced_intron	7669634	7671322	-	asmbl_22251	none	STRG.22247.1	1	STRG.22247.2,blat.proc3825158.chain_3063	2
scaffold_5	retained_intron	12915260	12915370	-	asmbl_44493	none	blat.proc3825150.chain_2710	1	STRG.6524.1,STRG.6524.2,blat.proc3825150.chain_2709,blat.proc3825150.chain_2711	4
scaffold_11	retained_exon	17100753	17100818	+	asmbl_6193,asmbl_6194	none	STRG.14376.2,STRG.14376.3,blat.proc3825170.chain_2932,blat.proc3825170.chain_2933,blat.proc3825170.chain_2934	5	STRG.14376.1	1
scaffold_2	starts_in_intron	15487710	15487710	+	asmbl_25053,asmbl_25057	none	STRG.2506.4,blat.proc3825164.chain_2791,blat.proc3825164.chain_2794	3	STRG.2506.1,STRG.2506.2,STRG.2506.3,blat.proc3825164.chain_2792,blat.proc3825164.chain_2793	5
scaffold_20	alt_donor	3712039	3712040	+	asmbl_26537,asmbl_26540	none	STRG.23072.1,blat.proc3825176.chain_179,blat.proc3825176.chain_182	3	STRG.23072.2	1
scaffold_4	retained_intron	7198052	7199617	-	asmbl_42700	none	STRG.4553.1,Trinity_GG_2558_c0_g1_i4,blat.proc3825150.chain_798,blat.proc3825150.chain_799	4	blat.proc3825150.chain_800	1
scaffold_6	spliced_intron	12552240	12553416	-	asmbl_48825	none	STRG.8017.1	1	STRG.8017.2,blat.proc3825152.chain_421	2
scaffold_2	alt_donor	6517413	6517414	+	asmbl_24473	none	STRG.2022.4	1	STRG.2022.1,STRG.2022.2,STRG.2022.3,Trinity_GG_18449_c0_g1_i2	4
scaffold_1	alternate_exon	15101324	15101421	+	asmbl_2422	none	STRG.1078.2,blat.proc3825164.chain_1236	2	STRG.1078.1,blat.proc3825164.chain_1237	2
scaffold_4	starts_in_intron	4097515	4097515	+	asmbl_41223	none	Trinity_GG_19675_c0_g1_i4,blat.proc3825166.chain_706	2	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,blat.proc3825166.chain_702,blat.proc3825166.chain_705,blat.proc3825166.chain_710	7
scaffold_1	spliced_intron	1250261	1250375	-	asmbl_57	none	STRG.76.1,Trinity_GG_6_c1_g1_i1,blat.proc3825148.chain_16	3	STRG.76.2,Trinity_GG_6_c1_g1_i2,blat.proc3825148.chain_15	3
scaffold_17	retained_intron	9088832	9088926	-	asmbl_18148,asmbl_18149	none	STRG.20538.1,STRG.20538.2,blat.proc3825158.chain_1561	3	STRG.20538.4	1
scaffold_28	spliced_intron	3523207	3523344	-	asmbl_38154	none	STRG.29571.1	1	STRG.29571.2,blat.proc3825162.chain_2723	2
scaffold_13	starts_in_intron	5544061	5544061	+	asmbl_10870	none	blat.proc3825172.chain_596	1	STRG.15858.1,blat.proc3825172.chain_595	2
scaffold_12	alt_acceptor	4352511	4352512	+	asmbl_7606	none	blat.proc3825170.chain_3132	1	STRG.14613.1,STRG.14613.2,blat.proc3825170.chain_3131	3
scaffold_13	spliced_intron	7655418	7655568	+	asmbl_11062,asmbl_11064,asmbl_11065,asmbl_11066	none	STRG.16054.1,STRG.16054.2,blat.proc3825172.chain_821,blat.proc3825172.chain_824,blat.proc3825172.chain_825	5	Trinity_GG_26131_c0_g1_i3,blat.proc3825172.chain_820,blat.proc3825172.chain_823	3
scaffold_15	alt_acceptor	9287349	9287350	+	asmbl_15382,asmbl_15383	none	blat.proc3825172.chain_3076,blat.proc3825172.chain_3077	2	STRG.18460.1,STRG.18460.2	2
scaffold_8	alt_donor	9167853	9167854	-	asmbl_52016,asmbl_52017,asmbl_52020	none	STRG.10185.1,STRG.10185.4,blat.proc3825152.chain_2350	3	STRG.10185.2,STRG.10185.3	2
scaffold_26	spliced_intron	9316596	9316754	+	asmbl_35214,asmbl_35217,asmbl_35218,asmbl_35219,asmbl_35224	none	STRG.28487.1,STRG.28487.2,blat.proc3825178.chain_1612,blat.proc3825178.chain_1614,blat.proc3825178.chain_1615,blat.proc3825178.chain_1616	6	STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1618	3
scaffold_17	ends_in_intron	2566265	2566265	+	asmbl_18665	none	blat.proc3825174.chain_932	1	STRG.20057.1,STRG.20057.2,STRG.20057.3,Trinity_GG_28293_c0_g2_i2,blat.proc3825174.chain_933,blat.proc3825174.chain_934,blat.proc3825174.chain_935	7
scaffold_5	retained_intron	8748797	8748963	+	asmbl_45566	none	STRG.6210.1,Trinity_GG_20640_c0_g1_i3,blat.proc3825166.chain_2311	3	STRG.6210.2,Trinity_GG_20640_c0_g1_i4,Trinity_GG_20640_c0_g1_i5,blat.proc3825166.chain_2308,blat.proc3825166.chain_2309,blat.proc3825166.chain_2310,blat.proc3825166.chain_2312	7
scaffold_2	skipped_exon	13393860	13394379	-	asmbl_23512	none	STRG.2358.2	1	STRG.2358.1,Trinity_GG_1308_c0_g1_i1,blat.proc3825148.chain_2346	3
scaffold_13	alt_acceptor	13559333	13559334	+	asmbl_11391	none	STRG.16409.2	1	STRG.16409.1	1
scaffold_13	spliced_intron	393652	393774	-	asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9351,asmbl_9352,asmbl_9353,asmbl_9354	none	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.5,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24	Trinity_GG_8688_c0_g1_i12,blat.proc3825156.chain_365	2
scaffold_4	spliced_intron	12690853	12690998	-	asmbl_42951,asmbl_42952	none	STRG.4910.1,STRG.4910.3,blat.proc3825150.chain_1018,blat.proc3825150.chain_1019	4	STRG.4910.4,blat.proc3825150.chain_1021	2
scaffold_27	starts_in_intron	7011782	7011782	-	asmbl_37089	none	STRG.29069.1,Trinity_GG_16299_c0_g1_i2,blat.proc3825162.chain_2290	3	STRG.29069.2	1
scaffold_3	alternate_exon	5753367	5754542	+	asmbl_40075	none	STRG.3240.1,Trinity_GG_19095_c0_g1_i4,blat.proc3825164.chain_3412	3	STRG.3240.2	1
scaffold_28	alt_acceptor	224146	224147	-	asmbl_37900,asmbl_37901	none	STRG.29247.1,STRG.29247.2	2	STRG.29247.3	1
scaffold_17	starts_in_intron	9594039	9594039	-	asmbl_18183	none	Trinity_GG_11573_c0_g1_i1,blat.proc3825158.chain_1601	2	STRG.20580.2,STRG.20580.3,blat.proc3825158.chain_1602	3
scaffold_9	alternate_exon	11796217	11796405	-	asmbl_55309	none	blat.proc3825152.chain_3686	1	STRG.11496.1,STRG.11496.2,blat.proc3825152.chain_3683,blat.proc3825152.chain_3684,blat.proc3825152.chain_3685	5
scaffold_17	retained_intron	8640140	8640241	-	asmbl_18109	none	blat.proc3825158.chain_1521	1	STRG.20482.1,blat.proc3825158.chain_1523	2
scaffold_3	alt_donor	14495729	14495730	-	asmbl_39382,asmbl_39383	none	Trinity_GG_2093_c0_g1_i1,Trinity_GG_2093_c0_g1_i2,blat.proc3825148.chain_3719,blat.proc3825148.chain_3720	4	STRG.3790.1,Trinity_GG_2093_c0_g2_i1	2
scaffold_10	retained_exon	5751001	5751048	-	asmbl_4380	none	STRG.12408.1,blat.proc3825154.chain_946	2	STRG.12408.2	1
scaffold_9	spliced_intron	11851343	11852018	-	asmbl_55334	none	STRG.11503.2,blat.proc3825152.chain_3713	2	blat.proc3825152.chain_3716	1
scaffold_7	skipped_exon	8773897	8774927	+	asmbl_50050,asmbl_50052	none	STRG.9117.2,STRG.9117.3,Trinity_GG_22376_c0_g1_i3	3	STRG.9117.1,Trinity_GG_22376_c0_g1_i1	2
scaffold_1	skipped_exon	3502214	3503905	-	asmbl_146,asmbl_148,asmbl_150,asmbl_151,asmbl_152,asmbl_153,asmbl_154	none	STRG.221.2,STRG.221.4,blat.proc3825148.chain_215,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_218,blat.proc3825148.chain_219,blat.proc3825148.chain_220,blat.proc3825148.chain_221	9	STRG.221.1,blat.proc3825148.chain_213,blat.proc3825148.chain_214	3
scaffold_4	starts_in_intron	8011123	8011123	+	asmbl_41532	none	Trinity_GG_19880_c0_g1_i1,blat.proc3825166.chain_1078	2	STRG.4616.1,blat.proc3825166.chain_1077	2
scaffold_5	ends_in_intron	7120045	7120045	-	asmbl_44167	none	blat.proc3825150.chain_2280	1	STRG.6121.1,blat.proc3825150.chain_2281	2
scaffold_2	starts_in_intron	4580120	4580120	+	asmbl_24357	none	Trinity_GG_18341_c1_g2_i1,blat.proc3825164.chain_1981	2	STRG.1886.1,STRG.1886.2,STRG.1886.3,blat.proc3825164.chain_1977,blat.proc3825164.chain_1980	5
scaffold_6	starts_in_intron	5011615	5011615	-	asmbl_48380	none	blat.proc3825150.chain_3653	1	STRG.7475.1,blat.proc3825150.chain_3654	2
scaffold_13	starts_in_intron	3820333	3820333	-	asmbl_9589	none	STRG.15711.1	1	STRG.15711.2,STRG.15711.3,blat.proc3825156.chain_573	3
scaffold_6	ends_in_intron	10891806	10891806	-	asmbl_48722	none	blat.proc3825152.chain_290	1	STRG.7906.1,Trinity_GG_4479_c0_g1_i1,blat.proc3825152.chain_291	3
scaffold_3	retained_intron	4282352	4282433	+	asmbl_39993	none	STRG.3123.1	1	STRG.3123.2	1
scaffold_19	alt_acceptor	8213617	8213618	-	asmbl_22281	none	STRG.22270.2,blat.proc3825158.chain_3080	2	STRG.22270.1,STRG.22270.3,blat.proc3825158.chain_3081,blat.proc3825158.chain_3082	4
scaffold_21	alt_donor	3120571	3120572	+	asmbl_28445,asmbl_28446	none	STRG.23942.1,STRG.23942.2,blat.proc3825176.chain_1172	3	blat.proc3825176.chain_1171	1
scaffold_26	retained_intron	10097149	10097583	-	asmbl_35808,asmbl_35812	none	Trinity_GG_15947_c0_g1_i3,blat.proc3825162.chain_1716,blat.proc3825162.chain_1718	3	STRG.28531.2	1
scaffold_500	alt_acceptor	2856	2857	+	asmbl_46490	none	STRG.30357.6	1	STRG.30357.3,STRG.30357.5,blat.proc3825178.chain_3440	3
scaffold_2	alt_acceptor	20324186	20324187	-	asmbl_23896	none	STRG.2879.2	1	STRG.2879.1,blat.proc3825148.chain_2762	2
scaffold_19	retained_exon	12337504	12337563	+	asmbl_21787,asmbl_21788	none	STRG.22564.1,STRG.22564.2,blat.proc3825174.chain_3511,blat.proc3825174.chain_3512	4	blat.proc3825174.chain_3510,blat.proc3825174.chain_3513	2
scaffold_2	alternate_exon	8055627	8055809	-	asmbl_23304	none	STRG.2094.1,blat.proc3825148.chain_2121	2	STRG.2094.3,Trinity_GG_1165_c1_g1_i1	2
scaffold_7	starts_in_intron	15269635	15269635	+	asmbl_50426,asmbl_50434	none	Trinity_GG_22636_c0_g1_i7,blat.proc3825168.chain_2121,blat.proc3825168.chain_2124	3	STRG.9546.1,STRG.9546.2,STRG.9546.3,blat.proc3825168.chain_2120,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2125	7
scaffold_3	retained_intron	10929425	10929727	+	asmbl_40321	none	Trinity_GG_19312_c0_g1_i2,blat.proc3825166.chain_58	2	STRG.3532.1,blat.proc3825166.chain_59	2
scaffold_23	spliced_intron	2604317	2604475	-	asmbl_30750	none	STRG.25724.1,blat.proc3825160.chain_2901	2	blat.proc3825160.chain_2902	1
scaffold_1	retained_intron	14522290	14522424	-	asmbl_928	none	Trinity_GG_552_c0_g1_i2,blat.proc3825148.chain_1054	2	STRG.1050.2,STRG.1050.4,blat.proc3825148.chain_1051	3
scaffold_28	alt_acceptor	4458523	4458524	+	asmbl_37535	none	STRG.29628.1	1	STRG.29628.2,Trinity_GG_33736_c0_g1_i1,blat.proc3825178.chain_2805	3
scaffold_22	spliced_intron	10069396	10069489	+	asmbl_30344	none	STRG.25364.2	1	STRG.25364.1	1
scaffold_18	spliced_intron	8863627	8864527	-	asmbl_20025,asmbl_20027,asmbl_20028,asmbl_20029,asmbl_20030,asmbl_20031,asmbl_20032,asmbl_20033	none	STRG.21549.1,STRG.21549.2,blat.proc3825158.chain_2354,blat.proc3825158.chain_2355,blat.proc3825158.chain_2358,blat.proc3825158.chain_2359,blat.proc3825158.chain_2360,blat.proc3825158.chain_2361,blat.proc3825158.chain_2362	9	Trinity_GG_11998_c0_g1_i1,blat.proc3825158.chain_2353	2
scaffold_9	retained_exon	645134	645512	+	asmbl_53781	none	STRG.10793.1,blat.proc3825168.chain_3345	2	STRG.10793.4	1
scaffold_16	alt_donor	9338076	9338077	-	asmbl_17274	none	STRG.19538.2,Trinity_GG_10898_c1_g1_i1,blat.proc3825158.chain_555	3	STRG.19538.1,Trinity_GG_10898_c1_g1_i2,blat.proc3825158.chain_554	3
scaffold_10	alt_acceptor	5006973	5006974	-	asmbl_4331	none	STRG.12325.1,blat.proc3825154.chain_893	2	STRG.12325.2,Trinity_GG_6889_c0_g1_i1,blat.proc3825154.chain_894	3
scaffold_13	ends_in_intron	2344713	2344713	+	asmbl_10598	none	STRG.15564.4	1	STRG.15564.11,STRG.15564.12,STRG.15564.2,STRG.15564.5	4
scaffold_28	ends_in_intron	2198112	2198112	+	asmbl_37343	none	STRG.29390.1,Trinity_GG_33584_c0_g1_i1,blat.proc3825178.chain_2544	3	STRG.29390.2,STRG.29390.3,Trinity_GG_33584_c0_g1_i2,blat.proc3825178.chain_2543	4
scaffold_5	ends_in_intron	8145176	8145176	+	asmbl_45536	none	blat.proc3825166.chain_2400	1	STRG.6190.1,STRG.6190.2,STRG.6190.3,blat.proc3825166.chain_2396,blat.proc3825166.chain_2397,blat.proc3825166.chain_2398,blat.proc3825166.chain_2399	7
scaffold_6	retained_intron	2479060	2479128	-	asmbl_48129	none	Trinity_GG_4048_c0_g2_i1,blat.proc3825150.chain_3362	2	STRG.7245.2	1
scaffold_1	ends_in_intron	4568582	4568582	-	asmbl_202	none	blat.proc3825148.chain_152	1	STRG.285.1,STRG.285.2,STRG.285.4,blat.proc3825148.chain_153	4
scaffold_8	spliced_intron	9819500	9819912	+	asmbl_53109	none	STRG.10229.3,Trinity_GG_22998_c0_g2_i3,blat.proc3825168.chain_2787	3	STRG.10229.4,Trinity_GG_22998_c0_g1_i1,blat.proc3825168.chain_2783	3
scaffold_21	starts_in_intron	5594967	5594967	-	asmbl_27678	none	blat.proc3825160.chain_1253	1	STRG.24091.1,blat.proc3825160.chain_1252	2
scaffold_10	alternate_exon	7259521	7259568	-	asmbl_4536	none	STRG.12533.1,blat.proc3825154.chain_1123	2	STRG.12533.2	1
scaffold_28	alt_donor	3732179	3732180	-	asmbl_38171	none	STRG.29587.3	1	STRG.29587.1,STRG.29587.2,STRG.29587.4,blat.proc3825162.chain_2733,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2737,blat.proc3825162.chain_2738	9
scaffold_14	skipped_exon	8695572	8696048	-	asmbl_13338,asmbl_13341	none	STRG.17305.2,blat.proc3825156.chain_2144	2	STRG.17305.1,blat.proc3825156.chain_2143,blat.proc3825156.chain_2145	3
scaffold_3	alternate_exon	12061699	12061818	+	asmbl_40393	none	STRG.3630.1,Trinity_GG_19350_c0_g1_i1,blat.proc3825166.chain_128	3	STRG.3630.2	1
scaffold_5	alternate_exon	15674241	15681366	+	asmbl_46006	none	blat.proc3825166.chain_2861	1	blat.proc3825166.chain_2858	1
scaffold_6	retained_exon	12478001	12478109	+	asmbl_47397,asmbl_47398,asmbl_47399,asmbl_47400,asmbl_47403	none	STRG.8006.1,STRG.8006.2,STRG.8006.3,STRG.8006.4,blat.proc3825168.chain_472,blat.proc3825168.chain_474,blat.proc3825168.chain_477	7	blat.proc3825168.chain_473,blat.proc3825168.chain_475	2
scaffold_10	alt_donor	3283796	3283797	-	asmbl_4182	none	STRG.12151.2	1	STRG.12151.1,blat.proc3825154.chain_668	2
scaffold_1	spliced_intron	9298014	9298117	+	asmbl_1973,asmbl_1974,asmbl_1976	none	STRG.629.1,STRG.629.2,Trinity_GG_17708_c0_g1_i2,Trinity_GG_17708_c0_g1_i5,blat.proc3825164.chain_768,blat.proc3825164.chain_770	6	Trinity_GG_17708_c0_g1_i1,blat.proc3825164.chain_771	2
scaffold_13	starts_in_intron	272267	272267	+	asmbl_10467,asmbl_10468,asmbl_10472	none	STRG.15434.2,STRG.15434.3,blat.proc3825172.chain_195,blat.proc3825172.chain_196,blat.proc3825172.chain_197	5	STRG.15434.1,blat.proc3825172.chain_198	2
scaffold_15	alternate_exon	8440706	8440763	+	asmbl_15332	none	STRG.18398.2	1	STRG.18398.1,blat.proc3825172.chain_2997	2
scaffold_12	alt_donor	7335088	7335089	+	asmbl_7746,asmbl_7747	none	STRG.14813.1,STRG.14813.3,blat.proc3825170.chain_3352	3	STRG.14813.2,blat.proc3825170.chain_3351	2
scaffold_10	alt_donor	3794602	3794603	-	asmbl_4229,asmbl_4232	none	STRG.12212.1,blat.proc3825154.chain_782,blat.proc3825154.chain_783	3	STRG.12212.3	1
scaffold_3	retained_exon	11778452	11778567	-	asmbl_39189	none	STRG.3609.2	1	STRG.3609.1,blat.proc3825148.chain_3483	2
scaffold_10	ends_in_intron	7719531	7719531	+	asmbl_3302	none	blat.proc3825170.chain_1198	1	STRG.12559.1,blat.proc3825170.chain_1199,blat.proc3825170.chain_1200	3
scaffold_21	spliced_intron	8529229	8529354	+	asmbl_28816,asmbl_28817	none	STRG.24391.1,blat.proc3825176.chain_1459,blat.proc3825176.chain_1461,blat.proc3825176.chain_1465	4	blat.proc3825176.chain_1462,blat.proc3825176.chain_1464	2
scaffold_7	alt_acceptor	3951625	3951626	-	asmbl_50827	none	STRG.8793.2,blat.proc3825152.chain_1267	2	STRG.8793.1,blat.proc3825152.chain_1268	2
scaffold_18	alternate_exon	1396647	1403117	-	asmbl_19616,asmbl_19617,asmbl_19618,asmbl_19620,asmbl_19622	none	STRG.21025.1,STRG.21025.2,STRG.21025.3,STRG.21025.4,blat.proc3825158.chain_2005,blat.proc3825158.chain_2006	6	blat.proc3825158.chain_2003	1
scaffold_14	alt_donor	7446963	7446964	+	asmbl_12163	none	STRG.17186.2,blat.proc3825172.chain_1925	2	STRG.17186.1,blat.proc3825172.chain_1926	2
scaffold_25	alternate_exon	8706428	8706567	+	asmbl_33757	none	blat.proc3825178.chain_769	1	STRG.27702.1,STRG.27702.3,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_762,blat.proc3825178.chain_763,blat.proc3825178.chain_768	6
scaffold_2	starts_in_intron	5703096	5703096	-	asmbl_23155	none	blat.proc3825148.chain_1962	1	STRG.1962.1,STRG.1962.2,STRG.1962.3,blat.proc3825148.chain_1961,blat.proc3825148.chain_1963,blat.proc3825148.chain_1964	6
scaffold_27	retained_intron	314737	315174	-	asmbl_36658,asmbl_36659,asmbl_36662,asmbl_36663	none	STRG.28557.1,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725	4	STRG.28557.2,STRG.28557.3,Trinity_GG_15948_c0_g1_i7	3
scaffold_11	spliced_intron	262237	262334	-	asmbl_6389,asmbl_6390	none	STRG.13270.1,blat.proc3825154.chain_1850,blat.proc3825154.chain_1852	3	blat.proc3825154.chain_1851	1
scaffold_10	retained_exon	4215034	4215199	-	asmbl_4272	none	STRG.12257.1,blat.proc3825154.chain_812	2	STRG.12257.2	1
scaffold_1	alt_donor	14352457	14352458	-	asmbl_894	none	STRG.1033.2,blat.proc3825148.chain_1025	2	STRG.1033.1,blat.proc3825148.chain_1023,blat.proc3825148.chain_1026	3
scaffold_6	alt_donor	17831222	17831223	+	asmbl_47786	none	STRG.8472.2,blat.proc3825168.chain_937	2	Trinity_GG_34007_c0_g1_i1	1
scaffold_18	alternate_exon	6774402	6776185	-	asmbl_19917	none	STRG.21382.2	1	STRG.21382.3,blat.proc3825158.chain_2320	2
scaffold_22	alt_acceptor	10894917	10894918	-	asmbl_29630	none	STRG.25430.3	1	STRG.25430.1,STRG.25430.2,blat.proc3825160.chain_2594,blat.proc3825160.chain_2595	4
scaffold_11	alt_donor	8044054	8044055	-	asmbl_6822	none	STRG.13810.2	1	STRG.13810.1,blat.proc3825154.chain_2386	2
scaffold_5	retained_intron	9704092	9704702	-	asmbl_44296,asmbl_44298	none	STRG.6293.3,Trinity_GG_3551_c0_g1_i17,blat.proc3825150.chain_2501	3	STRG.6293.2,blat.proc3825150.chain_2499	2
scaffold_3	alternate_exon	5927361	5927963	-	asmbl_38874	none	blat.proc3825148.chain_3099	1	blat.proc3825148.chain_3098	1
scaffold_8	retained_exon	740014	740175	+	asmbl_52662	none	blat.proc3825168.chain_2237	1	STRG.9729.1	1
scaffold_22	alternate_exon	11701969	11702128	+	asmbl_30415	none	STRG.25519.1,Trinity_GG_31397_c0_g1_i1,blat.proc3825176.chain_2505	3	STRG.25519.2	1
scaffold_3	spliced_intron	6240997	6241570	-	asmbl_38932,asmbl_38934,asmbl_38935,asmbl_38938	none	STRG.3271.1,STRG.3271.4,STRG.3271.5,STRG.3271.6,blat.proc3825148.chain_3139,blat.proc3825148.chain_3140,blat.proc3825148.chain_3141	7	STRG.3271.2,blat.proc3825148.chain_3136,blat.proc3825148.chain_3138,blat.proc3825148.chain_3142,blat.proc3825148.chain_3143	5
scaffold_10	alt_acceptor	12143094	12143095	-	asmbl_4811	none	STRG.12846.2	1	STRG.12846.1	1
scaffold_8	alt_donor	3762036	3762037	+	asmbl_52799	none	STRG.9866.1	1	STRG.9866.2	1
scaffold_24	alt_donor	4836511	4836512	+	asmbl_32207	none	blat.proc3825176.chain_3524	1	STRG.26613.1,blat.proc3825176.chain_3523	2
scaffold_10	retained_intron	9555421	9557098	+	asmbl_3405	none	blat.proc3825170.chain_1279	1	STRG.12711.1	1
scaffold_23	alt_acceptor	9956312	9956313	-	asmbl_31115,asmbl_31116	none	STRG.26203.2,STRG.26203.3	2	STRG.26203.1,blat.proc3825160.chain_3297,blat.proc3825160.chain_3298	3
scaffold_11	retained_intron	8073261	8073486	-	asmbl_6833	none	Trinity_GG_7709_c1_g1_i4,blat.proc3825154.chain_2337	2	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335,blat.proc3825154.chain_2336	4
scaffold_12	alt_donor	10611669	10611670	+	asmbl_7951	none	STRG.15044.3,Trinity_GG_25597_c0_g1_i2,blat.proc3825170.chain_3549	3	STRG.15044.2	1
scaffold_1	retained_intron	6576083	6576214	-	asmbl_373	none	STRG.450.1,blat.proc3825148.chain_427	2	STRG.450.2,blat.proc3825148.chain_425,blat.proc3825148.chain_426	3
scaffold_4	retained_intron	13590208	13590355	+	asmbl_41804,asmbl_41805	none	STRG.4984.1,Trinity_GG_20083_c0_g1_i3,blat.proc3825166.chain_1391,blat.proc3825166.chain_1392	4	STRG.4984.2,blat.proc3825166.chain_1390	2
scaffold_6	ends_in_intron	14017501	14017501	-	asmbl_48978	none	Trinity_GG_4644_c0_g1_i1,blat.proc3825152.chain_587	2	STRG.8156.1,blat.proc3825152.chain_586	2
scaffold_6	starts_in_intron	3349565	3349565	+	asmbl_46837	none	STRG.7347.2	1	STRG.7347.1	1
scaffold_10	retained_intron	3928652	3928785	-	asmbl_4242	none	STRG.12235.3	1	STRG.12235.4,blat.proc3825154.chain_798	2
scaffold_14	alt_acceptor	6277225	6277226	-	asmbl_13114,asmbl_13115	none	STRG.17077.3,STRG.17077.4,blat.proc3825156.chain_1801	3	STRG.17077.1,STRG.17077.2,blat.proc3825156.chain_1798,blat.proc3825156.chain_1799,blat.proc3825156.chain_1800	5
scaffold_7	alt_donor	9816879	9816880	-	asmbl_51078	none	STRG.9180.1,blat.proc3825152.chain_1537	2	STRG.9180.2,blat.proc3825152.chain_1536	2
scaffold_17	alt_acceptor	7101836	7101837	+	asmbl_18895	none	STRG.20382.1,blat.proc3825174.chain_1182	2	STRG.20382.2,blat.proc3825174.chain_1181	2
scaffold_1	retained_intron	5736121	5736230	+	asmbl_1766	none	Trinity_GG_17561_c0_g1_i3,blat.proc3825164.chain_507	2	STRG.389.1,STRG.389.2,blat.proc3825164.chain_505,blat.proc3825164.chain_508,blat.proc3825164.chain_509,blat.proc3825164.chain_510	6
scaffold_28	alt_acceptor	2406078	2406079	+	asmbl_37363,asmbl_37364	none	STRG.29414.1,STRG.29414.2,blat.proc3825178.chain_2579,blat.proc3825178.chain_2580	4	STRG.29414.3,STRG.29414.4,blat.proc3825178.chain_2581,blat.proc3825178.chain_2582	4
scaffold_21	alt_acceptor	11272091	11272092	-	asmbl_28114	none	STRG.24607.2	1	STRG.24607.1,blat.proc3825160.chain_1823,blat.proc3825160.chain_1824,blat.proc3825160.chain_1825,blat.proc3825160.chain_1827,blat.proc3825160.chain_1829	6
scaffold_23	retained_intron	2164190	2164417	-	asmbl_30700	none	STRG.25690.1	1	STRG.25690.2	1
scaffold_19	retained_intron	13266345	13266432	-	asmbl_22635	none	blat.proc3825158.chain_3495	1	STRG.22646.1,blat.proc3825158.chain_3494	2
scaffold_13	alt_acceptor	8954859	8954860	+	asmbl_11164,asmbl_11165	none	STRG.16167.3,blat.proc3825172.chain_867,blat.proc3825172.chain_871	3	STRG.16167.1,STRG.16167.2,blat.proc3825172.chain_868,blat.proc3825172.chain_870	4
scaffold_15	retained_intron	2823948	2824025	-	asmbl_14054	none	STRG.18075.1	1	STRG.18075.2,Trinity_GG_10175_c0_g2_i1,Trinity_GG_10175_c0_g2_i2,blat.proc3825156.chain_2921	4
scaffold_20	alt_acceptor	11733009	11733010	+	asmbl_27093	none	STRG.23677.1,blat.proc3825176.chain_904	2	STRG.23677.2	1
scaffold_43	alt_acceptor	829	830	-	asmbl_43695,asmbl_43698	none	STRG.30047.2,STRG.30047.6	2	STRG.30047.7	1
scaffold_7	retained_intron	15270861	15271287	+	asmbl_50434,asmbl_50435	none	blat.proc3825168.chain_2121,blat.proc3825168.chain_2126	2	STRG.9546.1,STRG.9546.3,blat.proc3825168.chain_2122,blat.proc3825168.chain_2125	4
scaffold_19	spliced_intron	11832215	11832284	+	asmbl_21727	none	Trinity_GG_29771_c0_g1_i1,blat.proc3825174.chain_3543	2	STRG.22511.1,Trinity_GG_29771_c0_g1_i2,blat.proc3825174.chain_3544	3
scaffold_7	spliced_intron	6042675	6043339	-	asmbl_50912	none	STRG.8910.4,blat.proc3825152.chain_1342	2	STRG.8910.1,Trinity_GG_5061_c0_g1_i13,Trinity_GG_5061_c0_g1_i3,Trinity_GG_5061_c0_g1_i4,Trinity_GG_5061_c0_g1_i9,blat.proc3825152.chain_1343,blat.proc3825152.chain_1346,blat.proc3825152.chain_1347,blat.proc3825152.chain_1348	9
scaffold_10	alt_acceptor	782613	782614	+	asmbl_2870,asmbl_2874,asmbl_2875,asmbl_2876	none	blat.proc3825170.chain_654,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	4	blat.proc3825170.chain_655	1
scaffold_25	starts_in_intron	3497021	3497021	+	asmbl_33424	none	blat.proc3825178.chain_397	1	STRG.27287.1,blat.proc3825178.chain_398	2
scaffold_6	starts_in_intron	879508	879508	-	asmbl_48085	none	blat.proc3825150.chain_3276	1	STRG.7154.1,blat.proc3825150.chain_3275	2
scaffold_8	skipped_exon	738734	740013	+	asmbl_52662	none	blat.proc3825168.chain_2237	1	STRG.9729.1	1
scaffold_17	alt_donor	14394391	14394392	+	asmbl_19405,asmbl_19406	none	STRG.20919.1,STRG.20919.3,blat.proc3825174.chain_1808,blat.proc3825174.chain_1809	4	STRG.20919.2,blat.proc3825174.chain_1810	2
scaffold_3	starts_in_intron	11002101	11002101	+	asmbl_40329	none	blat.proc3825166.chain_97	1	STRG.3550.1,blat.proc3825166.chain_96	2
scaffold_4	ends_in_intron	6136273	6136273	-	asmbl_42656	none	STRG.4484.2,blat.proc3825150.chain_733	2	STRG.4484.1	1
scaffold_4	starts_in_intron	6350747	6350747	+	asmbl_41407	none	blat.proc3825166.chain_954	1	STRG.4505.1,Trinity_GG_19807_c0_g1_i3,blat.proc3825166.chain_953	3
scaffold_6	starts_in_intron	18912154	18912154	-	asmbl_49288	none	blat.proc3825152.chain_1010	1	STRG.8560.1,STRG.8560.2,blat.proc3825152.chain_1011	3
scaffold_2	retained_intron	15455859	15455931	+	asmbl_25038,asmbl_25040,asmbl_25041	none	STRG.2500.2,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809	4	STRG.2500.1,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811	5
scaffold_23	alt_acceptor	4163045	4163046	-	asmbl_30840	none	STRG.25831.1,blat.proc3825160.chain_3027	2	STRG.25831.3,blat.proc3825160.chain_3026	2
scaffold_5	spliced_intron	13825214	13825331	-	asmbl_44569	none	STRG.6600.1,Trinity_GG_3707_c0_g1_i1,blat.proc3825150.chain_2790	3	STRG.6600.2	1
scaffold_2	retained_exon	7881107	7881454	+	asmbl_24581,asmbl_24586	none	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291	5	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2
scaffold_6	retained_exon	13060364	13060448	-	asmbl_48870,asmbl_48872	none	STRG.8063.1,STRG.8063.2,blat.proc3825152.chain_455	3	STRG.8063.3	1
scaffold_15	alternate_exon	13655009	13655262	-	asmbl_14648	none	STRG.18793.1	1	STRG.18793.3,blat.proc3825156.chain_3645	2
scaffold_9	retained_intron	14817657	14817753	-	asmbl_55495,asmbl_55502,asmbl_55504	none	STRG.11702.3,Trinity_GG_6457_c0_g1_i1,blat.proc3825154.chain_161,blat.proc3825154.chain_164	4	STRG.11702.4,STRG.11702.6,blat.proc3825154.chain_163	3
scaffold_10	retained_intron	9555608	9557098	+	asmbl_3405	none	blat.proc3825170.chain_1279	1	STRG.12711.3,Trinity_GG_24296_c0_g1_i14,blat.proc3825170.chain_1286	3
scaffold_14	alt_donor	11439770	11439771	-	asmbl_13484	none	STRG.17475.1,blat.proc3825156.chain_2281	2	STRG.17475.2	1
scaffold_16	retained_intron	10448144	10448354	+	asmbl_16534,asmbl_16535	none	STRG.19614.1,STRG.19614.3,Trinity_GG_28027_c0_g1_i5,blat.proc3825174.chain_487	4	STRG.19614.4	1
scaffold_8	retained_intron	9651612	9651635	+	asmbl_53092,asmbl_53093,asmbl_53094,asmbl_53095	none	STRG.10219.1,STRG.10219.2,STRG.10219.3,STRG.10219.5	4	blat.proc3825168.chain_2808,blat.proc3825168.chain_2809,blat.proc3825168.chain_2810	3
scaffold_27	starts_in_intron	627409	627409	-	asmbl_36704	none	Trinity_GG_15996_c0_g1_i5,blat.proc3825162.chain_1826	2	STRG.28583.1,STRG.28583.2,STRG.28583.4,Trinity_GG_15996_c0_g1_i1,blat.proc3825162.chain_1824,blat.proc3825162.chain_1827,blat.proc3825162.chain_1828	7
scaffold_3	skipped_exon	17695398	17696191	+	asmbl_40690	none	STRG.3991.1	1	STRG.3991.2,blat.proc3825166.chain_441	2
scaffold_14	spliced_intron	7216942	7217143	+	asmbl_12135,asmbl_12136,asmbl_12137	none	STRG.17156.1,blat.proc3825172.chain_1869,blat.proc3825172.chain_1870,blat.proc3825172.chain_1871	4	Trinity_GG_26721_c0_g1_i3,blat.proc3825172.chain_1868	2
scaffold_13	starts_in_intron	6114176	6114176	+	asmbl_10915	none	blat.proc3825172.chain_620	1	STRG.15920.1,STRG.15920.2,blat.proc3825172.chain_621	3
scaffold_16	alt_donor	8025909	8025910	-	asmbl_17213	none	STRG.19442.1,blat.proc3825158.chain_595	2	STRG.19442.2	1
scaffold_5	spliced_intron	1548524	1548586	-	asmbl_43861	none	STRG.5712.1	1	Trinity_GG_3178_c0_g1_i2,blat.proc3825150.chain_1853	2
scaffold_8	retained_exon	9128242	9128688	-	asmbl_52007,asmbl_52010	none	STRG.10172.3,STRG.10172.4	2	STRG.10172.2,blat.proc3825152.chain_2387,blat.proc3825152.chain_2389	3
scaffold_18	skipped_exon	12935267	12935549	+	asmbl_20981	none	STRG.21740.1	1	STRG.21740.2	1
scaffold_18	alt_acceptor	7943323	7943324	-	asmbl_19989	none	STRG.21493.3	1	STRG.21493.1,STRG.21493.2	2
scaffold_1	alt_donor	1041790	1041791	+	asmbl_1454	none	STRG.62.2,blat.proc3825164.chain_92	2	STRG.62.4,Trinity_GG_17322_c1_g1_i1,blat.proc3825164.chain_93	3
scaffold_28	starts_in_intron	8578818	8578818	+	asmbl_37762	none	Trinity_GG_33893_c0_g1_i1,blat.proc3825178.chain_3100	2	STRG.29938.1,blat.proc3825178.chain_3099,blat.proc3825178.chain_3101	3
scaffold_17	retained_intron	13072493	13072592	-	asmbl_18348	none	blat.proc3825158.chain_1805	1	blat.proc3825158.chain_1807	1
scaffold_7	alt_donor	10282578	10282579	+	asmbl_50103	none	STRG.9205.1,blat.proc3825168.chain_1708	2	Trinity_GG_22418_c0_g2_i2,blat.proc3825168.chain_1707,blat.proc3825168.chain_1710	3
scaffold_14	retained_exon	14148818	14149024	+	asmbl_12525	none	STRG.17687.1	1	STRG.17687.2,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	3
scaffold_13	alt_acceptor	10044688	10044689	+	asmbl_11229	none	STRG.16247.1,blat.proc3825172.chain_1058,blat.proc3825172.chain_1059	3	blat.proc3825172.chain_1056,blat.proc3825172.chain_1057	2
scaffold_8	skipped_exon	11852641	11854227	+	asmbl_53279,asmbl_53288	none	STRG.10390.4,STRG.10390.5	2	STRG.10390.3,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	4
scaffold_26	retained_intron	9045289	9045366	+	asmbl_35203	none	Trinity_GG_33066_c0_g1_i1,blat.proc3825178.chain_1593	2	STRG.28471.1,STRG.28471.2,Trinity_GG_33066_c0_g1_i3,blat.proc3825178.chain_1595	4
scaffold_9	alt_donor	5530705	5530706	+	asmbl_54049,asmbl_54051	none	STRG.11135.1,STRG.11135.2,Trinity_GG_23507_c1_g1_i2,blat.proc3825168.chain_3645	4	Trinity_GG_23507_c1_g1_i1,blat.proc3825168.chain_3646	2
scaffold_1	alt_donor	16326292	16326293	+	asmbl_2478	none	STRG.1145.1	1	STRG.1145.2	1
scaffold_3	retained_intron	9518073	9518444	+	asmbl_40225	none	Trinity_GG_19245_c0_g1_i2,blat.proc3825164.chain_3674	2	STRG.3436.1,STRG.3436.2,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3676,blat.proc3825164.chain_3677,blat.proc3825164.chain_3678	7
scaffold_7	alt_acceptor	83561	83562	-	asmbl_50662	none	STRG.8589.2	1	STRG.8589.1	1
scaffold_23	skipped_exon	7511956	7514060	-	asmbl_31033	none	STRG.26071.3,blat.proc3825160.chain_3240	2	STRG.26071.1,STRG.26071.2,blat.proc3825160.chain_3241	3
scaffold_6	ends_in_intron	12497977	12497977	+	asmbl_47416	none	blat.proc3825168.chain_493	1	STRG.8009.1,STRG.8009.2,Trinity_GG_21714_c0_g1_i1,Trinity_GG_21714_c0_g1_i2,blat.proc3825168.chain_490,blat.proc3825168.chain_491,blat.proc3825168.chain_494,blat.proc3825168.chain_495	8
scaffold_22	retained_exon	11475695	11475839	-	asmbl_29680	none	STRG.25494.2	1	STRG.25494.1	1
scaffold_6	starts_in_intron	9133910	9133910	+	asmbl_47208,asmbl_47217,asmbl_47218	none	STRG.7790.3,blat.proc3825168.chain_210,blat.proc3825168.chain_217	3	STRG.7790.1,STRG.7790.2,blat.proc3825168.chain_211,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_219	7
scaffold_23	alternate_exon	5581283	5583385	+	asmbl_31577,asmbl_31578,asmbl_31579,asmbl_31582,asmbl_31583,asmbl_31584	none	STRG.25933.1,STRG.25933.2,STRG.25933.3,blat.proc3825176.chain_2834,blat.proc3825176.chain_2835,blat.proc3825176.chain_2837,blat.proc3825176.chain_2838,blat.proc3825176.chain_2839,blat.proc3825176.chain_2840	9	STRG.25933.4	1
scaffold_2	alt_acceptor	6652276	6652277	+	asmbl_24489	none	STRG.2024.1,blat.proc3825164.chain_2098	2	STRG.2024.2,blat.proc3825164.chain_2097	2
scaffold_1	alternate_exon	415093	415257	-	asmbl_20	none	STRG.24.2	1	STRG.24.1,blat.proc3825148.chain_37,blat.proc3825148.chain_38	3
scaffold_6	starts_in_intron	9987421	9987421	-	asmbl_48646,asmbl_48647	none	blat.proc3825152.chain_198,blat.proc3825152.chain_199	2	STRG.7839.1,STRG.7839.2,blat.proc3825152.chain_201	3
scaffold_14	ends_in_intron	149958	149958	-	asmbl_12777,asmbl_12778,asmbl_12781	none	blat.proc3825156.chain_1519,blat.proc3825156.chain_1520,blat.proc3825156.chain_1521	3	STRG.16711.2,blat.proc3825156.chain_1518	2
scaffold_27	alternate_exon	2881197	2881215	+	asmbl_36147	none	blat.proc3825178.chain_1942	1	STRG.28771.3,blat.proc3825178.chain_1938,blat.proc3825178.chain_1939,blat.proc3825178.chain_1940	4
scaffold_22	alternate_exon	8203221	8203381	-	asmbl_29463	none	STRG.25173.2	1	STRG.25173.1	1
scaffold_1	spliced_intron	14320593	14320863	+	asmbl_2382	none	blat.proc3825164.chain_1225	1	STRG.1027.2,blat.proc3825164.chain_1224,blat.proc3825164.chain_1226	3
scaffold_3	retained_exon	14514078	14514365	-	asmbl_39385	none	STRG.3791.3,Trinity_GG_2101_c0_g1_i1,blat.proc3825148.chain_3738	3	STRG.3791.2	1
scaffold_21	starts_in_intron	2400197	2400197	+	asmbl_28381	none	Trinity_GG_30499_c0_g1_i1,blat.proc3825176.chain_1016	2	STRG.23860.1,Trinity_GG_30499_c0_g1_i3,Trinity_GG_30499_c0_g1_i4,blat.proc3825176.chain_1014,blat.proc3825176.chain_1018	5
scaffold_12	starts_in_intron	5082164	5082164	+	asmbl_7641	none	Trinity_GG_25386_c0_g1_i1,blat.proc3825170.chain_3177	2	STRG.14680.1,blat.proc3825170.chain_3176,blat.proc3825170.chain_3178	3
scaffold_6	starts_in_intron	8561584	8561584	-	asmbl_48568,asmbl_48569	none	blat.proc3825152.chain_25,blat.proc3825152.chain_26	2	STRG.7737.1,STRG.7737.2	2
scaffold_14	alt_acceptor	15724882	15724883	-	asmbl_13742	none	STRG.17813.1,blat.proc3825156.chain_2625	2	STRG.17813.2,STRG.17813.3	2
scaffold_13	alt_acceptor	16437483	16437484	+	asmbl_11577,asmbl_11581	none	STRG.16696.1,STRG.16696.2,Trinity_GG_26477_c0_g1_i5,blat.proc3825172.chain_1426	4	Trinity_GG_26477_c0_g1_i1,blat.proc3825172.chain_1424	2
scaffold_20	skipped_exon	3251565	3253888	-	asmbl_25690	none	STRG.23047.2,blat.proc3825160.chain_130	2	STRG.23047.1,blat.proc3825160.chain_129	2
scaffold_2	retained_intron	14192137	14192314	-	asmbl_23564,asmbl_23565	none	Trinity_GG_1338_c0_g1_i3,Trinity_GG_1338_c0_g1_i8,blat.proc3825148.chain_2412,blat.proc3825148.chain_2416	4	STRG.2416.1,STRG.2416.2,STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	6
scaffold_14	alt_donor	9273884	9273885	-	asmbl_13361	none	STRG.17338.5	1	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203,blat.proc3825156.chain_2207	3
scaffold_20	spliced_intron	5886547	5886628	-	asmbl_25782	none	STRG.23194.1,blat.proc3825160.chain_266	2	Trinity_GG_12935_c0_g1_i1,blat.proc3825160.chain_265	2
scaffold_1	spliced_intron	4602131	4602216	+	asmbl_1678	none	STRG.287.1,blat.proc3825164.chain_292	2	Trinity_GG_17443_c0_g1_i2,blat.proc3825164.chain_293	2
scaffold_8	starts_in_intron	4669263	4669263	-	asmbl_51788	none	Trinity_GG_5533_c0_g2_i1,blat.proc3825152.chain_2180	2	blat.proc3825152.chain_2179	1
scaffold_1	alt_acceptor	5732064	5732065	-	asmbl_291,asmbl_293,asmbl_294	none	STRG.388.1,STRG.388.2,blat.proc3825148.chain_360,blat.proc3825148.chain_361	4	blat.proc3825148.chain_359	1
scaffold_4	alt_acceptor	19572000	19572001	+	asmbl_42154	none	STRG.5542.2	1	STRG.5542.1,blat.proc3825166.chain_1761	2
scaffold_20	starts_in_intron	2221686	2221686	-	asmbl_25637	none	STRG.22959.1	1	STRG.22959.2	1
scaffold_26	alt_acceptor	9044193	9044194	+	asmbl_35200	none	STRG.28471.1,Trinity_GG_33066_c0_g1_i3,blat.proc3825178.chain_1595	3	STRG.28471.2,Trinity_GG_33066_c0_g1_i2,blat.proc3825178.chain_1594	3
scaffold_15	ends_in_intron	4982817	4982817	-	asmbl_14184,asmbl_14185	none	STRG.18211.5,blat.proc3825156.chain_3069	2	STRG.18211.1,STRG.18211.3,STRG.18211.4,blat.proc3825156.chain_3070,blat.proc3825156.chain_3072	5
scaffold_2	spliced_intron	16085317	16085688	-	asmbl_23665,asmbl_23668,asmbl_23670	none	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2436,blat.proc3825148.chain_2438	4	blat.proc3825148.chain_2435,blat.proc3825148.chain_2437	2
scaffold_11	alternate_exon	1158919	1159157	+	asmbl_5329	none	blat.proc3825170.chain_1783	1	STRG.13315.2,STRG.13315.3	2
scaffold_17	retained_intron	1729059	1729151	+	asmbl_18628	none	blat.proc3825174.chain_840	1	STRG.20007.1,STRG.20007.2,blat.proc3825174.chain_839	3
scaffold_3	alt_acceptor	5664143	5664144	+	asmbl_40070	none	STRG.3228.1,blat.proc3825164.chain_3482	2	STRG.3228.3,blat.proc3825164.chain_3483	2
scaffold_14	spliced_intron	1130983	1131079	-	asmbl_12861,asmbl_12862	none	STRG.16777.1,STRG.16777.2,Trinity_GG_9403_c0_g1_i2,Trinity_GG_9403_c0_g1_i3,blat.proc3825156.chain_1608,blat.proc3825156.chain_1610	6	Trinity_GG_9403_c0_g1_i1,blat.proc3825156.chain_1609	2
scaffold_1	alt_acceptor	14422299	14422300	-	asmbl_916	none	STRG.1042.2	1	STRG.1042.1	1
scaffold_26	starts_in_intron	5561176	5561176	+	asmbl_35025	none	Trinity_GG_32902_c1_g1_i1,blat.proc3825178.chain_1304	2	STRG.28267.1,STRG.28267.2,blat.proc3825178.chain_1303	3
scaffold_322	retained_intron	6549	6737	-	asmbl_40971	none	Trinity_GG_16990_c0_g1_i5,blat.proc3825162.chain_3412	2	STRG.30281.1	1
scaffold_3	retained_intron	1765661	1765894	+	asmbl_39879,asmbl_39881	none	STRG.2994.3,Trinity_GG_19006_c0_g1_i1,blat.proc3825164.chain_3230	3	STRG.2994.1,STRG.2994.2	2
scaffold_20	starts_in_intron	11700575	11700575	+	asmbl_27091	none	Trinity_GG_30425_c0_g1_i2,blat.proc3825176.chain_890	2	STRG.23683.1,blat.proc3825176.chain_889	2
scaffold_4	spliced_intron	4415761	4416396	+	asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41248,asmbl_41249,asmbl_41254,asmbl_41255,asmbl_41258	none	STRG.4349.1,STRG.4349.2,STRG.4349.3,STRG.4349.4,Trinity_GG_19749_c0_g1_i14,Trinity_GG_19749_c0_g1_i15,Trinity_GG_19749_c0_g1_i21,Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_842,blat.proc3825166.chain_843,blat.proc3825166.chain_845,blat.proc3825166.chain_848,blat.proc3825166.chain_849,blat.proc3825166.chain_850,blat.proc3825166.chain_851	15	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_847,blat.proc3825166.chain_852,blat.proc3825166.chain_853,blat.proc3825166.chain_854,blat.proc3825166.chain_855	6
scaffold_1	retained_intron	3680316	3680406	+	asmbl_1625	none	STRG.242.1,blat.proc3825164.chain_370,blat.proc3825164.chain_372	3	blat.proc3825164.chain_366,blat.proc3825164.chain_368	2
scaffold_4	skipped_exon	17129157	17130325	-	asmbl_43258	none	STRG.5313.2,blat.proc3825150.chain_1491	2	STRG.5313.1,Trinity_GG_2969_c0_g1_i2	2
scaffold_16	spliced_intron	5393917	5394344	+	asmbl_16211	none	STRG.19288.1,Trinity_GG_27867_c0_g1_i3,blat.proc3825174.chain_181	3	blat.proc3825174.chain_180	1
scaffold_4	retained_intron	13723093	13723242	-	asmbl_43000	none	STRG.4994.1,blat.proc3825150.chain_1109	2	blat.proc3825150.chain_1108	1
scaffold_21	retained_intron	2654346	2654855	-	asmbl_27484,asmbl_27486,asmbl_27487,asmbl_27488,asmbl_27489	none	STRG.23906.2,STRG.23906.3,Trinity_GG_13292_c0_g1_i8,blat.proc3825160.chain_977,blat.proc3825160.chain_980,blat.proc3825160.chain_982,blat.proc3825160.chain_983	7	STRG.23906.1,Trinity_GG_13292_c0_g1_i2,Trinity_GG_13292_c0_g1_i3,blat.proc3825160.chain_976,blat.proc3825160.chain_981	5
scaffold_9	retained_intron	12112505	12112865	+	asmbl_54410	none	blat.proc3825170.chain_367	1	STRG.11537.2,STRG.11537.3,blat.proc3825170.chain_369	3
scaffold_10	alternate_exon	6012026	6017830	-	asmbl_4417,asmbl_4418	none	blat.proc3825154.chain_1005,blat.proc3825154.chain_1006	2	blat.proc3825154.chain_1007	1
scaffold_6	spliced_intron	10897965	10898174	+	asmbl_47303,asmbl_47304,asmbl_47305	none	STRG.7907.1,STRG.7907.2,STRG.7907.3,blat.proc3825168.chain_379,blat.proc3825168.chain_382	5	Trinity_GG_21655_c0_g1_i2,blat.proc3825168.chain_378	2
scaffold_1	alt_donor	13100567	13100568	-	asmbl_792	none	STRG.947.2,blat.proc3825148.chain_866	2	STRG.947.1,blat.proc3825148.chain_865	2
scaffold_6	starts_in_intron	12054008	12054008	-	asmbl_48783	none	blat.proc3825152.chain_302	1	STRG.7980.1,blat.proc3825152.chain_303	2
scaffold_6	starts_in_intron	16059987	16059987	-	asmbl_49101	none	Trinity_GG_4753_c0_g1_i4	1	STRG.8341.1,blat.proc3825152.chain_777	2
scaffold_25	alternate_exon	6162593	6162986	+	asmbl_33594	none	STRG.27502.2,blat.proc3825178.chain_600	2	STRG.27502.1	1
scaffold_9	alt_acceptor	5085774	5085775	+	asmbl_53990,asmbl_53991	none	STRG.11088.2,STRG.11088.3	2	STRG.11088.1,STRG.11088.4	2
scaffold_16	starts_in_intron	12018604	12018604	+	asmbl_16625	none	STRG.19728.3,blat.proc3825174.chain_577	2	STRG.19728.1,Trinity_GG_28082_c0_g1_i3,blat.proc3825174.chain_576	3
scaffold_8	ends_in_intron	15267743	15267743	+	asmbl_53396	none	STRG.10554.1	1	STRG.10554.2	1
scaffold_9	alt_acceptor	656253	656254	+	asmbl_53789	none	STRG.10802.2,blat.proc3825168.chain_3349	2	STRG.10802.1,blat.proc3825168.chain_3350	2
scaffold_25	starts_in_intron	4328986	4328986	-	asmbl_34178	none	Trinity_GG_15341_c0_g1_i1,blat.proc3825162.chain_730	2	STRG.27365.1,Trinity_GG_15341_c0_g1_i2,blat.proc3825162.chain_729	3
scaffold_27	alternate_exon	4243301	4243336	+	asmbl_36265	none	STRG.28884.1,Trinity_GG_33291_c0_g1_i1,blat.proc3825178.chain_2059	3	STRG.28884.2,blat.proc3825178.chain_2060	2
scaffold_3	retained_intron	14763888	14764213	-	asmbl_39415,asmbl_39419	none	STRG.3820.4,Trinity_GG_2082_c0_g1_i2,Trinity_GG_2082_c0_g1_i3,blat.proc3825148.chain_3684,blat.proc3825148.chain_3685	5	STRG.3820.2,STRG.3820.3,Trinity_GG_2082_c0_g1_i1,blat.proc3825148.chain_3686	4
scaffold_10	alt_acceptor	14826330	14826331	+	asmbl_3668	none	STRG.13026.3	1	STRG.13026.1,STRG.13026.2,blat.proc3825170.chain_1575	3
scaffold_8	alt_acceptor	11711666	11711667	-	asmbl_52155	none	STRG.10367.1,Trinity_GG_5750_c0_g1_i1,blat.proc3825152.chain_2571	3	STRG.10367.2	1
scaffold_5	spliced_intron	6933179	6933389	+	asmbl_45463	none	STRG.6107.1,blat.proc3825166.chain_2320	2	blat.proc3825166.chain_2323	1
scaffold_9	starts_in_intron	16592104	16592104	+	asmbl_54611	none	Trinity_GG_23901_c0_g1_i2,blat.proc3825170.chain_605	2	STRG.11799.1,blat.proc3825170.chain_606	2
scaffold_15	alt_donor	6793924	6793925	+	asmbl_15262	none	STRG.18296.1,Trinity_GG_27307_c0_g1_i2,blat.proc3825172.chain_2911	3	STRG.18296.2,STRG.18296.3,Trinity_GG_27307_c0_g1_i1,blat.proc3825172.chain_2910	4
scaffold_4	retained_intron	8619480	8619572	-	asmbl_42782	none	blat.proc3825150.chain_899	1	STRG.4680.1,STRG.4680.2,blat.proc3825150.chain_900,blat.proc3825150.chain_901	4
scaffold_401	ends_in_intron	854	854	+	asmbl_43667	none	blat.proc3825178.chain_3408	1	STRG.30309.1,blat.proc3825178.chain_3407	2
scaffold_127	alt_acceptor	5976	5977	+	asmbl_9280	none	STRG.30165.1	1	blat.proc3825162.chain_3324	1
scaffold_22	alternate_exon	8204659	8204757	-	asmbl_29462	none	STRG.25173.1	1	STRG.25173.2	1
scaffold_16	starts_in_intron	4490639	4490639	+	asmbl_16185	none	Trinity_GG_27842_c0_g1_i2,blat.proc3825174.chain_126	2	STRG.19245.1,Trinity_GG_27842_c0_g1_i1,blat.proc3825174.chain_125	3
scaffold_6	alternate_exon	17166886	17166910	+	asmbl_47734	none	blat.proc3825168.chain_794	1	Trinity_GG_21893_c0_g1_i1	1
scaffold_5	alternate_exon	14262735	14265037	+	asmbl_45914,asmbl_45915	none	STRG.6638.1,STRG.6638.2,blat.proc3825166.chain_2785,blat.proc3825166.chain_2788	4	blat.proc3825166.chain_2783	1
scaffold_1	skipped_exon	15279778	15281136	+	asmbl_2439	none	STRG.1094.2	1	STRG.1094.1,STRG.1094.3,blat.proc3825164.chain_1250	3
scaffold_25	alternate_exon	4870849	4870934	-	asmbl_34228	none	STRG.27419.1,Trinity_GG_15366_c0_g1_i1,blat.proc3825162.chain_764	3	STRG.27419.2,Trinity_GG_15366_c0_g1_i2,blat.proc3825162.chain_765	3
scaffold_27	alternate_exon	9099303	9099697	+	asmbl_36505	none	blat.proc3825178.chain_2363	1	STRG.29163.1,STRG.29163.2,blat.proc3825178.chain_2361,blat.proc3825178.chain_2362,blat.proc3825178.chain_2364	5
scaffold_16	alt_acceptor	10441842	10441843	+	asmbl_16530	none	STRG.19615.1,Trinity_GG_28034_c0_g1_i1,Trinity_GG_28034_c0_g1_i2,blat.proc3825174.chain_498	4	STRG.19615.2	1
scaffold_18	alt_donor	6901687	6901688	+	asmbl_20689	none	Trinity_GG_29115_c0_g1_i2,blat.proc3825174.chain_2400	2	STRG.21393.1,blat.proc3825174.chain_2399	2
scaffold_3	alternate_exon	6182619	6182663	-	asmbl_38912,asmbl_38913,asmbl_38914	none	blat.proc3825148.chain_3120,blat.proc3825148.chain_3122,blat.proc3825148.chain_3124	3	STRG.3266.5,blat.proc3825148.chain_3121,blat.proc3825148.chain_3123	3
scaffold_11	alt_donor	8426300	8426301	+	asmbl_5770,asmbl_5778	none	STRG.13861.1,STRG.13861.2	2	Trinity_GG_24892_c0_g1_i2,Trinity_GG_24892_c0_g1_i3,blat.proc3825170.chain_2299,blat.proc3825170.chain_2301	4
scaffold_10	retained_intron	8894175	8894277	-	asmbl_4630	none	blat.proc3825154.chain_1263	1	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	11
scaffold_5	starts_in_intron	11964818	11964818	+	asmbl_45779	none	Trinity_GG_20832_c0_g1_i1,blat.proc3825166.chain_2669	2	STRG.6448.1,Trinity_GG_20832_c0_g1_i2,blat.proc3825166.chain_2670	3
scaffold_17	alternate_exon	6905178	6905222	-	asmbl_18008	none	STRG.20354.1	1	STRG.20354.2,blat.proc3825158.chain_1385	2
scaffold_4	spliced_intron	2611815	2611924	-	asmbl_42396	none	STRG.4221.1,blat.proc3825150.chain_438	2	STRG.4221.2,blat.proc3825150.chain_439	2
scaffold_6	starts_in_intron	6146697	6146697	+	asmbl_47002	none	Trinity_GG_21448_c0_g1_i2,blat.proc3825166.chain_3746	2	STRG.7570.1,blat.proc3825166.chain_3747	2
scaffold_9	alt_acceptor	12116058	12116059	+	asmbl_54408	none	STRG.11537.4,Trinity_GG_23763_c0_g1_i1,blat.proc3825170.chain_365	3	STRG.11537.3	1
scaffold_5	alternate_exon	18506223	18506359	-	asmbl_44841	none	STRG.6983.3,blat.proc3825150.chain_3093	2	STRG.6983.2,blat.proc3825150.chain_3094	2
scaffold_5	alt_acceptor	1102482	1102483	-	asmbl_43824	none	STRG.5662.2	1	STRG.5662.1,blat.proc3825150.chain_1888	2
scaffold_8	retained_exon	9868875	9868994	+	asmbl_53117,asmbl_53118,asmbl_53119,asmbl_53123	none	STRG.10233.2,STRG.10233.5,blat.proc3825168.chain_2817,blat.proc3825168.chain_2818,blat.proc3825168.chain_2820	5	STRG.10233.6,blat.proc3825168.chain_2816,blat.proc3825168.chain_2819,blat.proc3825168.chain_2821	4
scaffold_6	starts_in_intron	8173203	8173203	-	asmbl_48535,asmbl_48536,asmbl_48541	none	blat.proc3825152.chain_84,blat.proc3825152.chain_87	2	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93	7
scaffold_10	spliced_intron	12679575	12679670	+	asmbl_3536	none	STRG.12860.3,Trinity_GG_24411_c0_g1_i1	2	STRG.12860.1,STRG.12860.2,Trinity_GG_24411_c0_g1_i2	3
scaffold_24	alt_acceptor	10603099	10603100	+	asmbl_32578,asmbl_32582	none	STRG.27028.1,blat.proc3825178.chain_221,blat.proc3825178.chain_222	3	STRG.27028.2	1
scaffold_10	alternate_exon	7838871	7839806	+	asmbl_3307	none	blat.proc3825170.chain_1209	1	STRG.12576.2	1
scaffold_26	starts_in_intron	5035098	5035098	+	asmbl_34942,asmbl_34953	none	STRG.28240.4,blat.proc3825178.chain_1165,blat.proc3825178.chain_1181	3	STRG.28240.1,STRG.28240.2,STRG.28240.3,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1175,blat.proc3825178.chain_1177,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180,blat.proc3825178.chain_1182	12
scaffold_17	retained_intron	14380546	14380566	+	asmbl_19400	none	STRG.20916.1,blat.proc3825174.chain_1828	2	STRG.20916.2	1
scaffold_11	ends_in_intron	8430883	8430883	+	asmbl_5774	none	blat.proc3825170.chain_2306	1	STRG.13861.1,STRG.13861.2,Trinity_GG_24892_c0_g1_i3,Trinity_GG_24892_c0_g2_i1,blat.proc3825170.chain_2299,blat.proc3825170.chain_2305	6
scaffold_11	ends_in_intron	4760307	4760307	-	asmbl_6631	none	Trinity_GG_7573_c0_g1_i3,blat.proc3825154.chain_2098	2	STRG.13575.1,blat.proc3825154.chain_2095,blat.proc3825154.chain_2096,blat.proc3825154.chain_2097	4
scaffold_24	alternate_exon	9953244	9957896	-	asmbl_33154,asmbl_33155,asmbl_33156,asmbl_33157,asmbl_33160,asmbl_33161,asmbl_33162	none	STRG.26968.1,STRG.26968.2,STRG.26968.6,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	8	Trinity_GG_15063_c0_g1_i3	1
scaffold_18	alt_acceptor	7547034	7547035	-	asmbl_19955,asmbl_19956	none	STRG.21458.1,blat.proc3825158.chain_2374,blat.proc3825158.chain_2375	3	STRG.21458.2,STRG.21458.3	2
scaffold_8	starts_in_intron	9123205	9123205	-	asmbl_52004	none	STRG.10168.2,blat.proc3825152.chain_2443	2	STRG.10168.1,blat.proc3825152.chain_2442	2
scaffold_5	alternate_exon	8134726	8135151	+	asmbl_45533	none	STRG.6190.1,blat.proc3825166.chain_2396	2	STRG.6190.3,blat.proc3825166.chain_2397	2
scaffold_11	alt_donor	2101161	2101162	-	asmbl_6475,asmbl_6476	none	STRG.13379.2,blat.proc3825154.chain_1949	2	STRG.13379.1,STRG.13379.3,blat.proc3825154.chain_1948,blat.proc3825154.chain_1950	4
scaffold_27	ends_in_intron	6782251	6782251	-	asmbl_37083	none	Trinity_GG_16292_c0_g1_i1,blat.proc3825162.chain_2275	2	STRG.29050.1,STRG.29050.2,blat.proc3825162.chain_2276,blat.proc3825162.chain_2279	4
scaffold_26	alt_acceptor	8987335	8987336	+	asmbl_35190	none	STRG.28461.1	1	STRG.28461.2,Trinity_GG_33062_c0_g1_i1,blat.proc3825178.chain_1588	3
scaffold_10	starts_in_intron	5539602	5539602	-	asmbl_4372	none	blat.proc3825154.chain_900	1	STRG.12373.1	1
scaffold_4	spliced_intron	19354741	19354943	-	asmbl_43433,asmbl_43435,asmbl_43436,asmbl_43437,asmbl_43438,asmbl_43440	none	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1681,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	7	Trinity_GG_3086_c0_g1_i9	1
scaffold_24	alt_acceptor	2465446	2465447	-	asmbl_32790,asmbl_32791	none	STRG.26473.1,STRG.26473.3	2	STRG.26473.2,STRG.26473.4,blat.proc3825160.chain_3604,blat.proc3825160.chain_3605	4
scaffold_26	alternate_exon	9840433	9841125	-	asmbl_35794,asmbl_35796	none	STRG.28545.3,Trinity_GG_15923_c0_g1_i3,Trinity_GG_15923_c0_g1_i4,blat.proc3825162.chain_1673,blat.proc3825162.chain_1674	5	STRG.28545.1,Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	3
scaffold_10	ends_in_intron	9054323	9054323	-	asmbl_4661	none	blat.proc3825154.chain_1237	1	STRG.12654.1,STRG.12654.2,Trinity_GG_7062_c0_g1_i1,blat.proc3825154.chain_1239,blat.proc3825154.chain_1240,blat.proc3825154.chain_1241,blat.proc3825154.chain_1242,blat.proc3825154.chain_1243	8
scaffold_20	starts_in_intron	6948468	6948468	-	asmbl_25853	none	STRG.23269.4,blat.proc3825160.chain_304	2	STRG.23269.2,STRG.23269.3,STRG.23269.5,blat.proc3825160.chain_305	4
scaffold_2	alt_donor	16424641	16424642	+	asmbl_25140	none	STRG.2580.2,blat.proc3825164.chain_2875	2	STRG.2580.1,blat.proc3825164.chain_2876	2
scaffold_28	alt_donor	2652929	2652930	+	asmbl_37397,asmbl_37398	none	blat.proc3825178.chain_2669,blat.proc3825178.chain_2670	2	STRG.29457.1,STRG.29457.2,blat.proc3825178.chain_2671	3
scaffold_24	alternate_exon	10480715	10482257	+	asmbl_32563,asmbl_32564	none	STRG.27018.1,STRG.27018.3,Trinity_GG_32229_c4_g1_i1,blat.proc3825178.chain_204,blat.proc3825178.chain_205,blat.proc3825178.chain_208	6	STRG.27018.4	1
scaffold_16	alt_acceptor	7372454	7372455	+	asmbl_16334,asmbl_16335	none	STRG.19397.2,STRG.19397.3,blat.proc3825174.chain_330	3	STRG.19397.1,blat.proc3825174.chain_331	2
scaffold_5	starts_in_intron	3981748	3981748	-	asmbl_43938	none	Trinity_GG_3274_c0_g1_i3,blat.proc3825150.chain_2022	2	STRG.5871.1,blat.proc3825150.chain_2019	2
scaffold_10	spliced_intron	9555608	9557098	+	asmbl_3397,asmbl_3399	none	STRG.12711.3,Trinity_GG_24296_c0_g1_i14,blat.proc3825170.chain_1286	3	blat.proc3825170.chain_1279	1
scaffold_8	alt_donor	12693269	12693270	+	asmbl_53325,asmbl_53326,asmbl_53330,asmbl_53331	none	blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3011	4	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3009	3
scaffold_10	alt_donor	10505603	10505604	-	asmbl_4746	none	blat.proc3825154.chain_1359	1	STRG.12738.1,blat.proc3825154.chain_1358	2
scaffold_2	spliced_intron	2995469	2995489	-	asmbl_22953	none	STRG.1746.3	1	STRG.1746.4	1
scaffold_27	alt_acceptor	2796618	2796619	+	asmbl_36115	none	blat.proc3825178.chain_1916	1	STRG.28760.1,blat.proc3825178.chain_1917	2
scaffold_4	spliced_intron	17622846	17622975	+	asmbl_42068	none	STRG.5351.1,blat.proc3825166.chain_1735	2	blat.proc3825166.chain_1736	1
scaffold_12	starts_in_intron	16376291	16376291	+	asmbl_8166	none	Trinity_GG_25732_c0_g1_i1,blat.proc3825172.chain_37	2	STRG.15394.1,blat.proc3825172.chain_38	2
scaffold_21	skipped_exon	7811690	7812846	-	asmbl_27855	none	STRG.24317.3	1	blat.proc3825160.chain_1426	1
scaffold_23	skipped_exon	3239279	3240880	+	asmbl_31430	none	STRG.25761.1	1	STRG.25761.2,STRG.25761.3,blat.proc3825176.chain_2713,blat.proc3825176.chain_2714	4
scaffold_14	ends_in_intron	13220151	13220151	+	asmbl_12458	none	STRG.17621.3	1	STRG.17621.1,STRG.17621.2,blat.proc3825172.chain_2346	3
scaffold_21	spliced_intron	256225	256484	-	asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27288,asmbl_27294,asmbl_27295,asmbl_27296,asmbl_27297	none	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806	8	blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	3
scaffold_13	skipped_exon	14561036	14563633	-	asmbl_10198	none	STRG.16504.1,blat.proc3825156.chain_1271	2	STRG.16504.3,STRG.16504.5,blat.proc3825156.chain_1270	3
scaffold_17	skipped_exon	12115337	12116491	+	asmbl_19260	none	STRG.20740.3,blat.proc3825174.chain_1622	2	STRG.20740.2,blat.proc3825174.chain_1621	2
scaffold_12	alternate_exon	6530238	6530268	+	asmbl_7695	none	STRG.14750.2	1	STRG.14750.1,Trinity_GG_25445_c0_g1_i1,blat.proc3825170.chain_3267	3
scaffold_12	alternate_exon	9229443	9230828	-	asmbl_8660	none	STRG.14924.2	1	STRG.14924.3,blat.proc3825154.chain_3390	2
scaffold_20	skipped_exon	2763173	2765473	-	asmbl_25670,asmbl_25674	none	STRG.23018.2,STRG.23018.5	2	STRG.23018.3,STRG.23018.4	2
scaffold_10	alt_acceptor	5824132	5824133	+	asmbl_3207	none	STRG.12406.3,Trinity_GG_24196_c0_g1_i3,blat.proc3825170.chain_1101	3	STRG.12406.2,Trinity_GG_24196_c0_g1_i4,blat.proc3825170.chain_1100	3
scaffold_19	retained_intron	12822074	12822167	-	asmbl_22548	none	blat.proc3825158.chain_3412	1	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3409,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3413,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	8
scaffold_23	ends_in_intron	4694629	4694629	+	asmbl_31527	none	blat.proc3825176.chain_2734	1	STRG.25876.1,blat.proc3825176.chain_2735	2
scaffold_17	starts_in_intron	4188278	4188278	-	asmbl_17840	none	STRG.20171.2,blat.proc3825158.chain_1223	2	STRG.20171.1,blat.proc3825158.chain_1219,blat.proc3825158.chain_1220,blat.proc3825158.chain_1221	4
scaffold_15	spliced_intron	2603301	2603322	+	asmbl_15072	none	STRG.18041.3	1	STRG.18041.1,STRG.18041.2,Trinity_GG_27216_c0_g1_i1,blat.proc3825172.chain_2731	4
scaffold_20	starts_in_intron	1628376	1628376	-	asmbl_25597	none	blat.proc3825158.chain_3694	1	STRG.22892.1	1
scaffold_19	starts_in_intron	11482545	11482545	-	asmbl_22405	none	blat.proc3825158.chain_3242	1	STRG.22486.1,STRG.22486.2,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	5
scaffold_10	starts_in_intron	9058945	9058945	-	asmbl_4667	none	blat.proc3825154.chain_1200	1	STRG.12655.1,STRG.12655.2,STRG.12655.3,blat.proc3825154.chain_1198,blat.proc3825154.chain_1202,blat.proc3825154.chain_1203,blat.proc3825154.chain_1204,blat.proc3825154.chain_1205	8
scaffold_11	skipped_exon	17085466	17087549	-	asmbl_7247,asmbl_7248	none	STRG.14373.1,blat.proc3825154.chain_2882,blat.proc3825154.chain_2886	3	STRG.14373.3,STRG.14373.4,blat.proc3825154.chain_2885	3
scaffold_18	alt_acceptor	7172346	7172347	-	asmbl_19927,asmbl_19929	none	STRG.21417.1,STRG.21417.3,Trinity_GG_11987_c0_g1_i3,blat.proc3825158.chain_2333	4	STRG.21417.2,Trinity_GG_11987_c0_g1_i5,blat.proc3825158.chain_2335	3
scaffold_20	spliced_intron	4478711	4479160	-	asmbl_25736,asmbl_25737,asmbl_25738,asmbl_25742	none	STRG.23127.1,STRG.23127.2,STRG.23127.4,blat.proc3825160.chain_167,blat.proc3825160.chain_168	5	blat.proc3825160.chain_170	1
scaffold_20	skipped_exon	11566328	11568474	+	asmbl_27077	none	STRG.23663.1,blat.proc3825176.chain_869	2	STRG.23663.2,Trinity_GG_30414_c0_g1_i1,blat.proc3825176.chain_870	3
scaffold_2	retained_intron	15265851	15265947	+	asmbl_24997,asmbl_25002,asmbl_25004,asmbl_25005	none	STRG.2485.2,blat.proc3825164.chain_2602,blat.proc3825164.chain_2606,blat.proc3825164.chain_2608,blat.proc3825164.chain_2609	5	STRG.2485.1,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2607	7
scaffold_3	starts_in_intron	1757795	1757795	+	asmbl_39875	none	blat.proc3825164.chain_3240	1	STRG.2993.1,blat.proc3825164.chain_3236,blat.proc3825164.chain_3237,blat.proc3825164.chain_3238,blat.proc3825164.chain_3239	5
scaffold_5	spliced_intron	7710260	7710370	-	asmbl_44188	none	STRG.6151.1,blat.proc3825150.chain_2358	2	STRG.6151.2,blat.proc3825150.chain_2357,blat.proc3825150.chain_2359	3
scaffold_6	retained_intron	17886425	17886621	+	asmbl_47796	none	STRG.8482.2,Trinity_GG_21935_c0_g1_i3,blat.proc3825168.chain_874	3	STRG.8482.3,Trinity_GG_21935_c0_g1_i2,blat.proc3825168.chain_877	3
scaffold_1	alt_acceptor	14075899	14075900	+	asmbl_2332	none	Trinity_GG_17903_c0_g1_i4,blat.proc3825164.chain_1139	2	STRG.1003.1,Trinity_GG_17903_c0_g1_i3,blat.proc3825164.chain_1138	3
scaffold_6	retained_intron	3055244	3055748	+	asmbl_46800,asmbl_46806	none	STRG.7319.2,blat.proc3825166.chain_3521,blat.proc3825166.chain_3524	3	STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3522	3
scaffold_15	spliced_intron	13760201	13760410	-	asmbl_14663,asmbl_14665	none	STRG.18808.3,Trinity_GG_10569_c0_g1_i3,blat.proc3825156.chain_3662,blat.proc3825156.chain_3664	4	STRG.18808.2,Trinity_GG_10569_c0_g1_i2,blat.proc3825156.chain_3661	3
scaffold_25	starts_in_intron	3087091	3087091	-	asmbl_34095	none	STRG.27251.5	1	STRG.27251.2,STRG.27251.3,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555,blat.proc3825162.chain_559	6
scaffold_3	starts_in_intron	7327792	7327792	+	asmbl_40155	none	STRG.3334.2	1	STRG.3334.1,blat.proc3825164.chain_3614,blat.proc3825164.chain_3615	3
scaffold_6	starts_in_intron	3228289	3228289	+	asmbl_46818	none	Trinity_GG_21299_c1_g1_i1,blat.proc3825166.chain_3451	2	STRG.7331.2,blat.proc3825166.chain_3449,blat.proc3825166.chain_3450	3
scaffold_7	spliced_intron	12727956	12728043	+	asmbl_50295	none	STRG.9391.1,blat.proc3825168.chain_1914	2	blat.proc3825168.chain_1913	1
scaffold_6	retained_intron	3057252	3057331	+	asmbl_46803,asmbl_46805,asmbl_46806	none	blat.proc3825166.chain_3518,blat.proc3825166.chain_3521,blat.proc3825166.chain_3523	3	STRG.7319.1,STRG.7319.2,STRG.7319.3,blat.proc3825166.chain_3520,blat.proc3825166.chain_3522,blat.proc3825166.chain_3524,blat.proc3825166.chain_3526	7
scaffold_24	alt_acceptor	7163777	7163778	+	asmbl_32372	none	STRG.26763.2	1	STRG.26763.1,blat.proc3825176.chain_3718	2
scaffold_12	ends_in_intron	14104339	14104339	-	asmbl_8976	none	Trinity_GG_8557_c0_g1_i17,blat.proc3825156.chain_90	2	STRG.15241.1,Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i4,Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_87,blat.proc3825156.chain_88,blat.proc3825156.chain_91,blat.proc3825156.chain_92,blat.proc3825156.chain_93,blat.proc3825156.chain_94,blat.proc3825156.chain_95,blat.proc3825156.chain_96,blat.proc3825156.chain_97	14
scaffold_2	retained_intron	7783180	7784364	+	asmbl_24570,asmbl_24571	none	STRG.2075.3,STRG.2075.4,Trinity_GG_18484_c0_g1_i1,Trinity_GG_18484_c0_g1_i4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2230,blat.proc3825164.chain_2231	7	STRG.2075.2,STRG.2075.5,blat.proc3825164.chain_2229	3
scaffold_14	alternate_exon	14107221	14107281	-	asmbl_13678	none	STRG.17678.2	1	STRG.17678.3	1
scaffold_10	starts_in_intron	5177629	5177629	+	asmbl_3152	none	Trinity_GG_24127_c1_g1_i1,blat.proc3825170.chain_992	2	STRG.12343.1,blat.proc3825170.chain_988,blat.proc3825170.chain_990	3
scaffold_27	alt_acceptor	4939552	4939553	+	asmbl_36329,asmbl_36330	none	STRG.28932.1,STRG.28932.3	2	STRG.28932.2,STRG.28932.4,blat.proc3825178.chain_2145,blat.proc3825178.chain_2146,blat.proc3825178.chain_2147	5
scaffold_1	alternate_exon	20134790	20134875	-	asmbl_1173	none	STRG.1386.6	1	STRG.1386.7,blat.proc3825148.chain_1398	2
scaffold_6	retained_intron	18077604	18078336	+	asmbl_47812	none	STRG.8492.1,Trinity_GG_21993_c0_g1_i3,Trinity_GG_21993_c1_g1_i1,blat.proc3825168.chain_972,blat.proc3825168.chain_976	5	STRG.8492.2	1
scaffold_7	alternate_exon	6188517	6188670	+	asmbl_49847,asmbl_49848	none	STRG.8912.2,Trinity_GG_22230_c0_g1_i1,Trinity_GG_22230_c0_g1_i2,Trinity_GG_22230_c0_g1_i3	4	STRG.8912.1,blat.proc3825168.chain_1408,blat.proc3825168.chain_1409,blat.proc3825168.chain_1410	4
scaffold_4	spliced_intron	6282645	6283128	-	asmbl_42666,asmbl_42667,asmbl_42670,asmbl_42673,asmbl_42675	none	STRG.4498.1,STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i1,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,blat.proc3825150.chain_773,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_779	10	Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,blat.proc3825150.chain_777,blat.proc3825150.chain_780	4
scaffold_8	alt_donor	6903208	6903209	+	asmbl_52971	none	blat.proc3825168.chain_2536	1	STRG.10051.1,STRG.10051.2,STRG.10051.3,blat.proc3825168.chain_2534,blat.proc3825168.chain_2537	5
scaffold_1	spliced_intron	18485288	18485976	-	asmbl_1112	none	blat.proc3825148.chain_1321	1	STRG.1298.1,STRG.1298.3	2
scaffold_14	skipped_exon	15583680	15584986	+	asmbl_12633	none	STRG.17811.5	1	STRG.17811.2,STRG.17811.6,STRG.17811.7	3
scaffold_10	alt_acceptor	3922144	3922145	+	asmbl_3091	none	blat.proc3825170.chain_928	1	blat.proc3825170.chain_927	1
scaffold_18	ends_in_intron	3875545	3875545	+	asmbl_20487	none	STRG.21200.2,blat.proc3825174.chain_2140	2	STRG.21200.1,blat.proc3825174.chain_2141	2
scaffold_27	spliced_intron	3624384	3624770	+	asmbl_36212,asmbl_36216	none	STRG.28832.1,Trinity_GG_33273_c0_g1_i4,blat.proc3825178.chain_2007,blat.proc3825178.chain_2010	4	Trinity_GG_33273_c0_g1_i2,Trinity_GG_33273_c0_g1_i5,blat.proc3825178.chain_2008,blat.proc3825178.chain_2009,blat.proc3825178.chain_2011	5
scaffold_19	alt_acceptor	9461404	9461405	+	asmbl_21598	none	STRG.22376.1,blat.proc3825174.chain_3369	2	STRG.22376.2,blat.proc3825174.chain_3370	2
scaffold_19	retained_intron	8755628	8755743	+	asmbl_21551	none	blat.proc3825174.chain_3317	1	STRG.22336.1,blat.proc3825174.chain_3315,blat.proc3825174.chain_3316	3
scaffold_20	alternate_exon	9965669	9965850	-	asmbl_26063,asmbl_26068	none	STRG.23540.2,STRG.23540.4,Trinity_GG_13133_c0_g1_i2,blat.proc3825160.chain_627	4	STRG.23540.3,Trinity_GG_13133_c0_g1_i3,Trinity_GG_13133_c0_g1_i4,blat.proc3825160.chain_626,blat.proc3825160.chain_628	5
scaffold_1	alt_donor	15888367	15888368	+	asmbl_2455	none	Trinity_GG_17960_c0_g1_i3,blat.proc3825164.chain_1261	2	STRG.1119.1,STRG.1119.3,Trinity_GG_17960_c0_g1_i1,Trinity_GG_17960_c0_g1_i2,blat.proc3825164.chain_1258,blat.proc3825164.chain_1259	6
scaffold_7	spliced_intron	13019692	13019783	-	asmbl_51278	none	STRG.9415.1	1	blat.proc3825152.chain_1809	1
scaffold_19	starts_in_intron	10823153	10823153	-	asmbl_22354	none	blat.proc3825158.chain_3107	1	STRG.22422.1,blat.proc3825158.chain_3106	2
scaffold_1	retained_exon	12462825	12462908	-	asmbl_718,asmbl_719,asmbl_722	none	STRG.867.2,STRG.867.3,STRG.867.5	3	STRG.867.1	1
scaffold_6	ends_in_intron	17383662	17383662	+	asmbl_47747	none	blat.proc3825168.chain_908	1	STRG.8444.1,STRG.8444.2,Trinity_GG_21955_c0_g1_i1,Trinity_GG_21955_c0_g1_i4,blat.proc3825168.chain_906,blat.proc3825168.chain_907	6
scaffold_14	spliced_intron	3243702	3243805	+	asmbl_11928,asmbl_11929,asmbl_11933	none	STRG.16923.1,STRG.16923.2,blat.proc3825172.chain_1617,blat.proc3825172.chain_1621,blat.proc3825172.chain_1622	5	Trinity_GG_26577_c0_g1_i1,Trinity_GG_26577_c0_g1_i4,blat.proc3825172.chain_1619,blat.proc3825172.chain_1620	4
scaffold_11	alt_acceptor	13093787	13093788	+	asmbl_6032	none	Trinity_GG_25144_c1_g1_i1,blat.proc3825170.chain_2748,blat.proc3825170.chain_2752	3	STRG.14188.2,blat.proc3825170.chain_2746,blat.proc3825170.chain_2747	3
scaffold_11	alternate_exon	8046721	8046763	+	asmbl_5709	none	STRG.13811.2	1	STRG.13811.1,Trinity_GG_24887_c0_g1_i1,blat.proc3825170.chain_2288	3
scaffold_11	retained_intron	8192814	8192980	-	asmbl_6852	none	Trinity_GG_7742_c0_g1_i2,blat.proc3825154.chain_2393	2	STRG.13829.1,Trinity_GG_7742_c0_g1_i3,blat.proc3825154.chain_2395	3
scaffold_14	alternate_exon	8401692	8402052	-	asmbl_13301,asmbl_13306	none	STRG.17279.2,blat.proc3825156.chain_2087,blat.proc3825156.chain_2088	3	STRG.17279.1,STRG.17279.3,blat.proc3825156.chain_2084	3
scaffold_11	alt_donor	8790380	8790381	-	asmbl_6874	none	blat.proc3825170.chain_2482,blat.proc3825170.chain_2483	2	STRG.13904.1,STRG.13904.3,blat.proc3825170.chain_2484	3
scaffold_5	alt_acceptor	18787819	18787820	+	asmbl_46285	none	STRG.7002.1,Trinity_GG_21158_c0_g1_i3,blat.proc3825166.chain_3211	3	STRG.7002.2,Trinity_GG_21158_c0_g1_i2,blat.proc3825166.chain_3210	3
scaffold_5	starts_in_intron	12483701	12483701	+	asmbl_45801	none	Trinity_GG_20845_c0_g1_i4,blat.proc3825166.chain_2687	2	STRG.6485.1	1
scaffold_4	retained_intron	19357212	19357317	-	asmbl_43434,asmbl_43435,asmbl_43436,asmbl_43437	none	Trinity_GG_3086_c0_g1_i3,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1681,blat.proc3825150.chain_1687	5	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685,blat.proc3825150.chain_1688	5
scaffold_21	alt_donor	1302278	1302279	-	asmbl_27404,asmbl_27405,asmbl_27406	none	STRG.23810.3,Trinity_GG_13281_c0_g1_i1,Trinity_GG_13281_c0_g1_i2,Trinity_GG_13281_c0_g1_i3,blat.proc3825160.chain_949,blat.proc3825160.chain_950,blat.proc3825160.chain_951	7	STRG.23810.1,STRG.23810.4,STRG.23810.5	3
scaffold_14	retained_exon	9273524	9273607	-	asmbl_13364	none	STRG.17338.2	1	STRG.17338.4	1
scaffold_6	retained_intron	8172579	8172708	-	asmbl_48535,asmbl_48536,asmbl_48537	none	Trinity_GG_4351_c0_g1_i7,blat.proc3825152.chain_84,blat.proc3825152.chain_89	3	blat.proc3825152.chain_87,blat.proc3825152.chain_93	2
scaffold_2	starts_in_intron	1597853	1597853	+	asmbl_24215	none	blat.proc3825164.chain_1824	1	STRG.1627.1,STRG.1627.2,STRG.1627.3,STRG.1627.4,blat.proc3825164.chain_1823	5
scaffold_9	retained_exon	11542949	11543082	+	asmbl_54355,asmbl_54357,asmbl_54358	none	STRG.11471.1,STRG.11471.2,STRG.11471.3,Trinity_GG_23714_c0_g1_i2,blat.proc3825170.chain_296	5	Trinity_GG_23714_c0_g1_i1,blat.proc3825170.chain_295	2
scaffold_15	skipped_exon	13834390	13836975	-	asmbl_14677	none	STRG.18814.1,Trinity_GG_10553_c0_g1_i2,blat.proc3825156.chain_3638	3	STRG.18814.2,Trinity_GG_10553_c0_g1_i1,blat.proc3825156.chain_3639	3
scaffold_14	alt_donor	12824704	12824705	-	asmbl_13614,asmbl_13615,asmbl_13616	none	STRG.17598.1,STRG.17598.2,STRG.17598.4,blat.proc3825156.chain_2458,blat.proc3825156.chain_2464	5	STRG.17598.5,Trinity_GG_9905_c0_g1_i1,blat.proc3825156.chain_2462	3
scaffold_12	spliced_intron	16402135	16403321	+	asmbl_8172,asmbl_8174	none	STRG.15402.4,STRG.15402.5,blat.proc3825172.chain_46	3	STRG.15402.1,STRG.15402.2,STRG.15402.3,STRG.15402.6,Trinity_GG_25733_c0_g1_i1,Trinity_GG_25733_c0_g1_i10,Trinity_GG_25733_c0_g1_i3,Trinity_GG_25733_c0_g1_i7,blat.proc3825172.chain_40,blat.proc3825172.chain_43,blat.proc3825172.chain_44,blat.proc3825172.chain_45	12
scaffold_14	starts_in_intron	13581535	13581535	-	asmbl_13645	none	blat.proc3825156.chain_2489	1	STRG.17639.1,STRG.17639.2,blat.proc3825156.chain_2487,blat.proc3825156.chain_2488	4
scaffold_9	retained_exon	16346812	16347045	-	asmbl_55567	none	STRG.11788.1,blat.proc3825154.chain_237	2	STRG.11788.2	1
scaffold_15	spliced_intron	5454516	5454744	-	asmbl_14208,asmbl_14209,asmbl_14213,asmbl_14214	none	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	6	Trinity_GG_10273_c0_g1_i6,blat.proc3825156.chain_3107	2
scaffold_7	retained_intron	6042675	6043363	-	asmbl_50908	none	STRG.8910.1,Trinity_GG_5061_c0_g1_i13,Trinity_GG_5061_c0_g1_i3,Trinity_GG_5061_c0_g1_i4,Trinity_GG_5061_c0_g1_i9,blat.proc3825152.chain_1343,blat.proc3825152.chain_1346,blat.proc3825152.chain_1347,blat.proc3825152.chain_1348	9	STRG.8910.2,STRG.8910.3,blat.proc3825152.chain_1341,blat.proc3825152.chain_1344	4
scaffold_11	ends_in_intron	9652131	9652131	-	asmbl_6944	none	blat.proc3825154.chain_2514	1	STRG.13984.1,STRG.13984.2,blat.proc3825154.chain_2513	3
scaffold_15	alternate_exon	3401570	3401677	-	asmbl_14097,asmbl_14099	none	STRG.18121.1,STRG.18121.4,blat.proc3825156.chain_2975	3	STRG.18121.3,blat.proc3825156.chain_2976	2
scaffold_25	ends_in_intron	6069552	6069552	-	asmbl_34316	none	STRG.27490.4,Trinity_GG_15410_c3_g1_i1,blat.proc3825162.chain_854	3	STRG.27490.1,STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_845,blat.proc3825162.chain_846,blat.proc3825162.chain_847,blat.proc3825162.chain_848,blat.proc3825162.chain_849,blat.proc3825162.chain_850	9
scaffold_8	alt_acceptor	18152310	18152311	+	asmbl_53536	none	STRG.10719.2	1	STRG.10719.1,Trinity_GG_23248_c0_g1_i1,blat.proc3825168.chain_3235	3
scaffold_19	alt_donor	726645	726646	+	asmbl_21203,asmbl_21204,asmbl_21206	none	STRG.21857.2,STRG.21857.3,STRG.21857.4	3	STRG.21857.1	1
scaffold_4	starts_in_intron	12715386	12715386	-	asmbl_42956	none	Trinity_GG_2678_c0_g1_i1,blat.proc3825150.chain_999	2	STRG.4911.1,STRG.4911.2,blat.proc3825150.chain_997,blat.proc3825150.chain_998	4
scaffold_3	retained_intron	10756336	10756429	+	asmbl_40296	none	STRG.3509.2,blat.proc3825166.chain_29	2	STRG.3509.1,blat.proc3825166.chain_30	2
scaffold_12	alt_acceptor	135962	135963	+	asmbl_7438,asmbl_7439	none	STRG.14431.2,STRG.14431.3	2	blat.proc3825170.chain_2984,blat.proc3825170.chain_2985	2
scaffold_9	retained_intron	15384227	15384504	+	asmbl_54562	none	blat.proc3825170.chain_502	1	STRG.11739.3	1
scaffold_8	alt_acceptor	5698563	5698564	+	asmbl_52896	none	STRG.9987.1,Trinity_GG_22869_c1_g1_i1,blat.proc3825168.chain_2554	3	STRG.9987.2	1
scaffold_8	retained_intron	3615695	3615920	+	asmbl_52785	none	STRG.9863.1,blat.proc3825168.chain_2410	2	STRG.9863.3	1
scaffold_4	alternate_exon	12438593	12439319	+	asmbl_41721	none	STRG.4883.2,blat.proc3825166.chain_1308	2	STRG.4883.1,blat.proc3825166.chain_1307	2
scaffold_15	retained_exon	8074969	8075043	-	asmbl_14331	none	STRG.18383.2,blat.proc3825156.chain_3218	2	STRG.18383.1,blat.proc3825156.chain_3219	2
scaffold_22	alt_donor	693358	693359	+	asmbl_29881	none	STRG.24719.1,Trinity_GG_30979_c0_g1_i1,blat.proc3825176.chain_1847	3	STRG.24719.2,STRG.24719.3	2
scaffold_10	alternate_exon	3928828	3929132	-	asmbl_4241	none	STRG.12235.2,blat.proc3825154.chain_800	2	STRG.12235.1,blat.proc3825154.chain_797,blat.proc3825154.chain_801,blat.proc3825154.chain_802	4
scaffold_18	spliced_intron	10447970	10448099	+	asmbl_20925	none	Trinity_GG_29237_c0_g1_i1,blat.proc3825174.chain_2623	2	STRG.21646.1,Trinity_GG_29237_c0_g1_i2	2
scaffold_6	alt_acceptor	8581565	8581566	+	asmbl_47150,asmbl_47154	none	blat.proc3825168.chain_179,blat.proc3825168.chain_181	2	STRG.7738.2	1
scaffold_7	alt_acceptor	8073301	8073302	+	asmbl_49953	none	STRG.9047.3	1	STRG.9047.1,STRG.9047.2,blat.proc3825168.chain_1525,blat.proc3825168.chain_1526,blat.proc3825168.chain_1527	5
scaffold_4	alt_donor	666141	666142	-	asmbl_42341	none	blat.proc3825150.chain_298	1	STRG.4141.1,blat.proc3825150.chain_297,blat.proc3825150.chain_299	3
scaffold_13	retained_intron	3322991	3323068	-	asmbl_9530	none	Trinity_GG_8777_c0_g1_i2,blat.proc3825156.chain_517	2	STRG.15640.1,STRG.15640.2,Trinity_GG_8777_c0_g1_i1,blat.proc3825156.chain_518	4
scaffold_13	spliced_intron	7501582	7501940	-	asmbl_9884,asmbl_9885,asmbl_9886,asmbl_9887,asmbl_9889,asmbl_9890,asmbl_9892	none	STRG.16047.1,STRG.16047.2,STRG.16047.3,STRG.16047.4,blat.proc3825156.chain_899,blat.proc3825156.chain_902,blat.proc3825156.chain_903,blat.proc3825156.chain_904,blat.proc3825156.chain_906,blat.proc3825156.chain_908,blat.proc3825156.chain_909	11	blat.proc3825156.chain_900,blat.proc3825156.chain_901,blat.proc3825156.chain_905	3
scaffold_13	ends_in_intron	16140938	16140938	+	asmbl_11557	none	STRG.16654.2	1	STRG.16654.1,Trinity_GG_26491_c0_g1_i1	2
scaffold_7	ends_in_intron	12260865	12260865	+	asmbl_50226	none	blat.proc3825168.chain_1836	1	STRG.9322.2,Trinity_GG_22482_c0_g1_i4,blat.proc3825168.chain_1838	3
scaffold_13	alt_acceptor	7081818	7081819	-	asmbl_9845	none	STRG.16003.2,Trinity_GG_9004_c0_g1_i2,blat.proc3825156.chain_916	3	STRG.16003.1	1
scaffold_11	spliced_intron	2833544	2833641	+	asmbl_5380,asmbl_5381	none	STRG.13415.1,Trinity_GG_24674_c0_g1_i1,blat.proc3825170.chain_1950,blat.proc3825170.chain_1951	4	blat.proc3825170.chain_1952	1
scaffold_22	spliced_intron	4227359	4227697	-	asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29222,asmbl_29223,asmbl_29225,asmbl_29226,asmbl_29227	none	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	10	blat.proc3825160.chain_2074	1
scaffold_8	retained_intron	5857393	5857551	+	asmbl_52912,asmbl_52914	none	STRG.10001.2,Trinity_GG_22886_c0_g1_i3,blat.proc3825168.chain_2572	3	STRG.10001.1,STRG.10001.3,STRG.10001.4,Trinity_GG_22886_c0_g1_i1,Trinity_GG_22886_c0_g1_i2,Trinity_GG_22886_c0_g1_i4,Trinity_GG_22886_c0_g1_i5,blat.proc3825168.chain_2571,blat.proc3825168.chain_2573,blat.proc3825168.chain_2574,blat.proc3825168.chain_2575	11
scaffold_1	alt_acceptor	1907990	1907991	+	asmbl_1516,asmbl_1519	none	STRG.119.2,STRG.119.3	2	STRG.119.1,blat.proc3825164.chain_170,blat.proc3825164.chain_172	3
scaffold_1	alt_acceptor	1616524	1616525	+	asmbl_1497,asmbl_1499,asmbl_1503	none	STRG.113.1,STRG.113.4,Trinity_GG_17360_c0_g1_i2,Trinity_GG_17360_c0_g1_i5,blat.proc3825164.chain_165,blat.proc3825164.chain_167	6	Trinity_GG_17360_c0_g1_i4,blat.proc3825164.chain_163	2
scaffold_1	alt_donor	16225350	16225351	+	asmbl_2468	none	STRG.1133.2,blat.proc3825164.chain_1301	2	STRG.1133.1,blat.proc3825164.chain_1303	2
scaffold_16	spliced_intron	433622	433712	-	asmbl_16870,asmbl_16875,asmbl_16877,asmbl_16879	none	STRG.19041.2,blat.proc3825158.chain_201,blat.proc3825158.chain_202,blat.proc3825158.chain_204	4	blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_200	3
scaffold_27	alt_acceptor	6198319	6198320	+	asmbl_36378	none	STRG.29014.4	1	STRG.29014.1,STRG.29014.3,Trinity_GG_33374_c0_g1_i2,blat.proc3825178.chain_2228,blat.proc3825178.chain_2229	5
scaffold_15	retained_exon	6886779	6886835	-	asmbl_14264,asmbl_14267,asmbl_14268,asmbl_14270	none	STRG.18301.1,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3159	5	STRG.18301.2,STRG.18301.3,STRG.18301.4,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3156	6
scaffold_13	spliced_intron	16250502	16250639	+	asmbl_11567	none	STRG.16679.1,blat.proc3825172.chain_1459	2	Trinity_GG_26497_c0_g1_i4,blat.proc3825172.chain_1458	2
scaffold_10	alt_acceptor	1621383	1621384	+	asmbl_2950	none	STRG.12026.2,Trinity_GG_23966_c0_g1_i9,blat.proc3825170.chain_716	3	STRG.12026.1,STRG.12026.3,STRG.12026.4,STRG.12026.5,STRG.12026.6,Trinity_GG_23966_c0_g1_i3,Trinity_GG_23966_c0_g1_i4,Trinity_GG_23966_c0_g1_i7,Trinity_GG_23966_c0_g1_i8,blat.proc3825170.chain_713,blat.proc3825170.chain_714,blat.proc3825170.chain_715,blat.proc3825170.chain_717	13
scaffold_4	retained_intron	14087005	14087119	+	asmbl_41839	none	Trinity_GG_20098_c0_g1_i2,blat.proc3825166.chain_1410	2	STRG.5028.1,STRG.5028.2,Trinity_GG_20098_c0_g1_i1,Trinity_GG_20098_c0_g1_i3,blat.proc3825166.chain_1409,blat.proc3825166.chain_1411	6
scaffold_12	retained_intron	14104565	14104838	-	asmbl_8976	none	Trinity_GG_8557_c0_g1_i17,blat.proc3825156.chain_90	2	Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_88,blat.proc3825156.chain_95,blat.proc3825156.chain_96,blat.proc3825156.chain_97	6
scaffold_25	retained_exon	5625918	5625976	-	asmbl_34270	none	STRG.27464.1,blat.proc3825162.chain_828	2	blat.proc3825162.chain_829	1
scaffold_2	alt_donor	17611208	17611209	+	asmbl_25185,asmbl_25186,asmbl_25189	none	STRG.2653.1,STRG.2653.2,blat.proc3825164.chain_2942,blat.proc3825164.chain_2943,blat.proc3825164.chain_2944	5	STRG.2653.3	1
scaffold_20	alt_acceptor	5544467	5544468	+	asmbl_26624	none	STRG.23181.1	1	STRG.23181.2	1
scaffold_2	alt_donor	14193681	14193682	-	asmbl_23567,asmbl_23571	none	STRG.2416.2,blat.proc3825148.chain_2415	2	STRG.2416.3	1
scaffold_13	spliced_intron	1013360	1013456	+	asmbl_10520	none	STRG.15472.2	1	STRG.15472.1,Trinity_GG_25809_c0_g1_i1,blat.proc3825172.chain_178	3
scaffold_9	alt_acceptor	4674851	4674852	+	asmbl_53954	none	STRG.11041.2,Trinity_GG_23410_c0_g1_i2,blat.proc3825168.chain_3489	3	STRG.11041.1,Trinity_GG_23410_c0_g1_i1,blat.proc3825168.chain_3490	3
scaffold_1	ends_in_intron	104143	104143	+	asmbl_1397	none	blat.proc3825164.chain_107	1	STRG.12.1,Trinity_GG_17334_c0_g1_i2,blat.proc3825164.chain_105,blat.proc3825164.chain_106,blat.proc3825164.chain_109	5
scaffold_12	ends_in_intron	9856027	9856027	+	asmbl_7885	none	blat.proc3825170.chain_3519	1	STRG.14955.1,blat.proc3825170.chain_3521	2
scaffold_21	spliced_intron	10098326	10098427	+	asmbl_28857	none	STRG.24472.3	1	STRG.24472.1,STRG.24472.2	2
scaffold_15	alternate_exon	7182916	7183837	-	asmbl_14275	none	STRG.18310.2,blat.proc3825156.chain_3043	2	STRG.18310.3,blat.proc3825156.chain_3042	2
scaffold_15	alt_acceptor	13759939	13759940	-	asmbl_14664	none	STRG.18808.4,blat.proc3825156.chain_3663	2	STRG.18808.3,Trinity_GG_10569_c0_g1_i3,blat.proc3825156.chain_3662,blat.proc3825156.chain_3664	4
scaffold_1	retained_intron	10950202	10950931	+	asmbl_2036,asmbl_2037,asmbl_2039,asmbl_2040	none	STRG.715.2,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_862	6	STRG.715.3,blat.proc3825164.chain_864	2
scaffold_17	skipped_exon	2681607	2682291	+	asmbl_18679,asmbl_18683	none	STRG.20069.2,STRG.20069.3,blat.proc3825174.chain_848	3	STRG.20069.1,blat.proc3825174.chain_849,blat.proc3825174.chain_851	3
scaffold_18	retained_intron	7686561	7686708	+	asmbl_20774,asmbl_20775,asmbl_20776,asmbl_20782,asmbl_20784	none	STRG.21474.3,STRG.21474.5,Trinity_GG_29179_c0_g1_i14,blat.proc3825174.chain_2511,blat.proc3825174.chain_2512,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518	7	STRG.21474.2,blat.proc3825174.chain_2519	2
scaffold_4	alt_acceptor	8770992	8770993	+	asmbl_41580,asmbl_41581	none	STRG.4691.2,STRG.4691.4	2	STRG.4691.1,STRG.4691.3,STRG.4691.5,Trinity_GG_19922_c0_g1_i2,blat.proc3825166.chain_1141,blat.proc3825166.chain_1142	6
scaffold_8	alt_acceptor	15692368	15692369	+	asmbl_53413	none	STRG.10569.2	1	STRG.10569.1,Trinity_GG_23189_c0_g1_i2,blat.proc3825168.chain_3114	3
scaffold_10	alternate_exon	16531477	16534211	+	asmbl_3718,asmbl_3719	none	STRG.13128.1,blat.proc3825170.chain_1651,blat.proc3825170.chain_1653	3	STRG.13128.2,blat.proc3825170.chain_1654	2
scaffold_3	alt_acceptor	6247911	6247912	-	asmbl_38933,asmbl_38934,asmbl_38940	none	STRG.3271.2,STRG.3271.6,blat.proc3825148.chain_3137,blat.proc3825148.chain_3139,blat.proc3825148.chain_3143	5	STRG.3271.5,blat.proc3825148.chain_3138,blat.proc3825148.chain_3141	3
scaffold_9	skipped_exon	16346615	16347997	-	asmbl_55568	none	STRG.11788.2	1	STRG.11788.1,blat.proc3825154.chain_237	2
scaffold_43	alt_donor	780	781	-	asmbl_43694	none	STRG.30047.5	1	STRG.30047.1,STRG.30047.7	2
scaffold_13	alt_acceptor	2354605	2354606	+	asmbl_10595,asmbl_10604,asmbl_10605	none	STRG.15564.11,STRG.15564.2,STRG.15564.5	3	STRG.15564.12	1
scaffold_7	retained_intron	12410566	12410770	+	asmbl_50257	none	blat.proc3825168.chain_1860	1	STRG.9344.1,blat.proc3825168.chain_1859	2
scaffold_16	retained_intron	11394881	11395273	-	asmbl_17340,asmbl_17342,asmbl_17343	none	STRG.19673.1,STRG.19673.4,STRG.19673.6,Trinity_GG_11017_c3_g1_i1,blat.proc3825158.chain_729	5	STRG.19673.3	1
scaffold_24	alt_donor	5334387	5334388	-	asmbl_32899,asmbl_32902	none	STRG.26625.1,blat.proc3825162.chain_13,blat.proc3825162.chain_14	3	blat.proc3825162.chain_15	1
scaffold_5	spliced_intron	18259179	18259303	+	asmbl_46232	none	STRG.6962.1,Trinity_GG_21150_c1_g1_i2,blat.proc3825166.chain_3200	3	Trinity_GG_21150_c1_g1_i1,blat.proc3825166.chain_3199	2
scaffold_5	ends_in_intron	5848752	5848752	-	asmbl_44063	none	Trinity_GG_3387_c1_g1_i1,blat.proc3825150.chain_2228	2	STRG.5999.1,STRG.5999.2,blat.proc3825150.chain_2229	3
scaffold_12	starts_in_intron	7276205	7276205	-	asmbl_8566	none	blat.proc3825154.chain_3309	1	STRG.14801.1,STRG.14801.2,Trinity_GG_8260_c0_g1_i1,Trinity_GG_8260_c0_g1_i2,blat.proc3825154.chain_3307,blat.proc3825154.chain_3308	6
scaffold_5	retained_intron	6629852	6630029	-	asmbl_44121	none	STRG.6067.1,blat.proc3825150.chain_2256	2	STRG.6067.2,STRG.6067.3,blat.proc3825150.chain_2255	3
scaffold_3	retained_intron	19885475	19886465	-	asmbl_39669	none	STRG.4100.3,Trinity_GG_2243_c1_g1_i2,Trinity_GG_2243_c1_g1_i4,blat.proc3825150.chain_245,blat.proc3825150.chain_248	5	blat.proc3825150.chain_249	1
scaffold_20	alt_donor	11574958	11574959	-	asmbl_26158,asmbl_26159,asmbl_26161	none	STRG.23664.1,STRG.23664.3,STRG.23664.4,blat.proc3825160.chain_730,blat.proc3825160.chain_731	5	STRG.23664.2	1
scaffold_28	spliced_intron	303659	303715	+	asmbl_37275	none	STRG.29264.2	1	Trinity_GG_33561_c0_g1_i3,blat.proc3825178.chain_2507	2
scaffold_11	alt_donor	2203529	2203530	-	asmbl_6486	none	STRG.13383.3	1	STRG.13383.1,STRG.13383.2,STRG.13383.4	3
scaffold_4	spliced_intron	4451696	4451771	+	asmbl_41275	none	STRG.4355.1	1	STRG.4355.2,blat.proc3825166.chain_830	2
scaffold_27	alternate_exon	6196501	6196599	+	asmbl_36383	none	Trinity_GG_33374_c0_g1_i2,blat.proc3825178.chain_2228	2	STRG.29014.3	1
scaffold_20	alt_acceptor	3036841	3036842	+	asmbl_26516	none	STRG.23039.2	1	STRG.23039.1,blat.proc3825176.chain_209	2
scaffold_25	retained_intron	5776575	5776928	+	asmbl_33577	none	STRG.27472.1,blat.proc3825178.chain_583	2	STRG.27472.2,blat.proc3825178.chain_588	2
scaffold_20	alt_donor	10132449	10132450	+	asmbl_26937	none	STRG.23557.2	1	blat.proc3825176.chain_727	1
scaffold_25	alternate_exon	3292438	3292471	-	asmbl_34122	none	STRG.27284.4	1	STRG.27284.2,STRG.27284.3,STRG.27284.5,blat.proc3825162.chain_656,blat.proc3825162.chain_657	5
scaffold_25	retained_intron	8475662	8475908	+	asmbl_33739	none	blat.proc3825178.chain_791	1	STRG.27679.1,blat.proc3825178.chain_789,blat.proc3825178.chain_792	3
scaffold_3	alt_acceptor	12941558	12941559	-	asmbl_39242	none	STRG.3672.2	1	STRG.3672.1,Trinity_GG_2010_c0_g1_i2,blat.proc3825148.chain_3545	3
scaffold_5	spliced_intron	10304680	10304767	-	asmbl_44343,asmbl_44345	none	STRG.6333.1,blat.proc3825150.chain_2553,blat.proc3825150.chain_2554,blat.proc3825150.chain_2556	4	blat.proc3825150.chain_2555	1
scaffold_13	alternate_exon	8810329	8810521	-	asmbl_9981	none	STRG.16153.5,blat.proc3825156.chain_1068	2	blat.proc3825156.chain_1067	1
scaffold_13	alternate_exon	14863220	14863250	-	asmbl_10211	none	blat.proc3825156.chain_1363	1	STRG.16531.2,STRG.16531.3,blat.proc3825156.chain_1362	3
scaffold_3	skipped_exon	14668755	14671274	+	asmbl_40542	none	STRG.3810.1,Trinity_GG_19449_c0_g1_i3,blat.proc3825166.chain_300	3	STRG.3810.2,STRG.3810.3,Trinity_GG_19449_c0_g1_i1,blat.proc3825166.chain_299	4
scaffold_20	alternate_exon	6984083	6984192	-	asmbl_25861	none	STRG.23261.1	1	STRG.23261.3	1
scaffold_5	retained_exon	15628455	15628481	-	asmbl_44710	none	STRG.6755.2	1	STRG.6755.1	1
scaffold_1	ends_in_intron	8633041	8633041	-	asmbl_465	none	STRG.571.3	1	STRG.571.2,Trinity_GG_304_c0_g1_i5,blat.proc3825148.chain_546	3
scaffold_21	alternate_exon	10505501	10506791	-	asmbl_28052,asmbl_28053	none	STRG.24523.2,STRG.24523.3,blat.proc3825160.chain_1747	3	STRG.24523.1	1
scaffold_11	alternate_exon	8102121	8102682	+	asmbl_5733	none	STRG.13823.4	1	Trinity_GG_24917_c1_g1_i8,blat.proc3825170.chain_2353	2
scaffold_2	starts_in_intron	18710203	18710203	+	asmbl_25235	none	STRG.2748.3	1	STRG.2748.1,STRG.2748.2,Trinity_GG_18860_c1_g1_i4,blat.proc3825164.chain_3004,blat.proc3825164.chain_3005,blat.proc3825164.chain_3006	6
scaffold_12	alternate_exon	7507621	7510412	-	asmbl_8590	none	STRG.14832.1,Trinity_GG_8280_c1_g1_i2,blat.proc3825154.chain_3352	3	STRG.14832.2	1
scaffold_4	starts_in_intron	7993857	7993857	+	asmbl_41525	none	Trinity_GG_19881_c0_g1_i1,blat.proc3825166.chain_1083	2	STRG.4618.2,STRG.4618.3,Trinity_GG_19881_c0_g1_i5,blat.proc3825166.chain_1079,blat.proc3825166.chain_1080,blat.proc3825166.chain_1082	6
scaffold_12	starts_in_intron	4794049	4794049	-	asmbl_8461	none	blat.proc3825154.chain_3179	1	STRG.14656.1	1
scaffold_3	alternate_exon	3247884	3249029	+	asmbl_39945	none	blat.proc3825164.chain_3395	1	STRG.3072.6,Trinity_GG_19083_c2_g1_i1,blat.proc3825164.chain_3396	3
scaffold_18	starts_in_intron	6958685	6958685	+	asmbl_20697	none	blat.proc3825174.chain_2407	1	STRG.21402.1	1
scaffold_10	skipped_exon	3065795	3066072	-	asmbl_4157	none	STRG.12130.1,blat.proc3825154.chain_664	2	STRG.12130.3,blat.proc3825154.chain_665	2
scaffold_22	starts_in_intron	10277056	10277056	-	asmbl_29594	none	blat.proc3825160.chain_2521	1	blat.proc3825160.chain_2522	1
scaffold_20	spliced_intron	8129408	8129479	+	asmbl_26746	none	blat.proc3825176.chain_473	1	STRG.23358.1,Trinity_GG_30170_c0_g1_i3,blat.proc3825176.chain_471	3
scaffold_27	spliced_intron	1424171	1424344	-	asmbl_36757	none	STRG.28638.1,blat.proc3825162.chain_1910	2	blat.proc3825162.chain_1911	1
scaffold_10	starts_in_intron	641453	641453	-	asmbl_3978	none	blat.proc3825154.chain_526	1	STRG.11946.1,blat.proc3825154.chain_525	2
scaffold_1	spliced_intron	20135302	20135349	-	asmbl_1170,asmbl_1174	none	STRG.1386.5,STRG.1386.7	2	STRG.1386.1,Trinity_GG_765_c0_g1_i2	2
scaffold_9	alt_acceptor	5296577	5296578	+	asmbl_54030	none	blat.proc3825168.chain_3571	1	STRG.11112.1,STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6
scaffold_15	alternate_exon	2424598	2425732	-	asmbl_13998	none	Trinity_GG_10120_c1_g1_i1,blat.proc3825156.chain_2822	2	Trinity_GG_10120_c1_g1_i2,blat.proc3825156.chain_2823	2
scaffold_13	retained_intron	3568630	3568756	+	asmbl_10714	none	blat.proc3825172.chain_384	1	STRG.15671.1,STRG.15671.2,blat.proc3825172.chain_380,blat.proc3825172.chain_382	4
scaffold_25	alternate_exon	8700440	8702377	-	asmbl_34462	none	STRG.27695.3,blat.proc3825162.chain_1023	2	STRG.27695.4,Trinity_GG_15507_c1_g1_i1,blat.proc3825162.chain_1025,blat.proc3825162.chain_1027	4
scaffold_6	ends_in_intron	13948301	13948301	+	asmbl_47550,asmbl_47552	none	STRG.8147.2,STRG.8147.3	2	STRG.8147.1,Trinity_GG_21800_c0_g1_i2,blat.proc3825168.chain_655	3
scaffold_26	alt_acceptor	5486533	5486534	+	asmbl_35000	none	STRG.28257.4,Trinity_GG_32935_c1_g2_i3,blat.proc3825178.chain_1366,blat.proc3825178.chain_1368	4	STRG.28257.1,STRG.28257.2,Trinity_GG_32935_c1_g2_i1,blat.proc3825178.chain_1369	4
scaffold_15	starts_in_intron	7837801	7837801	+	asmbl_15306	none	blat.proc3825172.chain_3050	1	STRG.18362.1,blat.proc3825172.chain_3048,blat.proc3825172.chain_3049	3
scaffold_5	spliced_intron	10853540	10853712	+	asmbl_45699,asmbl_45701,asmbl_45702,asmbl_45704	none	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2521,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	5	blat.proc3825166.chain_2523	1
scaffold_3	retained_exon	6188092	6189042	-	asmbl_38908,asmbl_38917	none	STRG.3266.2,blat.proc3825148.chain_3123,blat.proc3825148.chain_3125	3	STRG.3266.1,blat.proc3825148.chain_3119,blat.proc3825148.chain_3121	3
scaffold_11	skipped_exon	2090208	2091184	+	asmbl_5362	none	STRG.13371.2,blat.proc3825170.chain_1928	2	STRG.13371.1,STRG.13371.3,blat.proc3825170.chain_1927,blat.proc3825170.chain_1929	4
scaffold_16	alternate_exon	7824556	7824597	+	asmbl_16358	none	STRG.19426.1	1	STRG.19426.2,blat.proc3825174.chain_306	2
scaffold_4	ends_in_intron	5179822	5179822	+	asmbl_41339	none	STRG.4405.1	1	blat.proc3825166.chain_872	1
scaffold_3	starts_in_intron	6959875	6959875	-	asmbl_38951	none	blat.proc3825148.chain_3184	1	STRG.3320.1,blat.proc3825148.chain_3183	2
scaffold_15	alt_acceptor	11940228	11940229	-	asmbl_14538	none	STRG.18636.2,blat.proc3825156.chain_3460	2	STRG.18636.1,blat.proc3825156.chain_3459	2
scaffold_21	starts_in_intron	233793	233793	-	asmbl_27280	none	blat.proc3825160.chain_838	1	STRG.23731.1,blat.proc3825160.chain_839	2
scaffold_3	alt_acceptor	4543356	4543357	+	asmbl_40017	none	STRG.3152.1	1	STRG.3152.2	1
scaffold_4	alt_acceptor	16433810	16433811	-	asmbl_43170,asmbl_43171	none	STRG.5219.1,STRG.5219.2	2	STRG.5219.3	1
scaffold_20	alternate_exon	11479122	11480460	+	asmbl_27052,asmbl_27059	none	STRG.23653.3,Trinity_GG_30405_c0_g1_i1,blat.proc3825176.chain_845	3	Trinity_GG_30405_c0_g2_i1,blat.proc3825176.chain_848	2
scaffold_20	spliced_intron	1468562	1468884	-	asmbl_25573,asmbl_25574	none	STRG.22868.1,STRG.22868.3,blat.proc3825158.chain_3735	3	STRG.22868.2,STRG.22868.4,Trinity_GG_12770_c0_g1_i3,blat.proc3825158.chain_3733,blat.proc3825158.chain_3734	5
scaffold_11	alt_donor	8102784	8102785	+	asmbl_5728,asmbl_5729,asmbl_5731	none	STRG.13823.1,STRG.13823.2,blat.proc3825170.chain_2349,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	5	STRG.13823.3,STRG.13823.4	2
scaffold_24	spliced_intron	9128917	9129415	+	asmbl_32520	none	STRG.26940.2,blat.proc3825178.chain_143	2	STRG.26940.1,blat.proc3825178.chain_142	2
scaffold_11	spliced_intron	4755809	4755904	+	asmbl_5518,asmbl_5521	none	STRG.13574.1,blat.proc3825170.chain_2115,blat.proc3825170.chain_2117	3	blat.proc3825170.chain_2116	1
scaffold_9	alternate_exon	11853140	11853374	-	asmbl_55335	none	STRG.11503.1,blat.proc3825152.chain_3714	2	STRG.11503.2,blat.proc3825152.chain_3713	2
scaffold_11	retained_intron	15653309	15653408	-	asmbl_7199,asmbl_7202	none	STRG.14308.2,blat.proc3825154.chain_2861,blat.proc3825154.chain_2867	3	STRG.14308.1,blat.proc3825154.chain_2859,blat.proc3825154.chain_2863,blat.proc3825154.chain_2866,blat.proc3825154.chain_2868	5
scaffold_12	alt_acceptor	14125377	14125378	-	asmbl_8989	none	blat.proc3825156.chain_78	1	STRG.15244.2	1
scaffold_12	alternate_exon	12387161	12387314	+	asmbl_7995	none	STRG.15149.1,blat.proc3825170.chain_3637	2	STRG.15149.2,STRG.15149.3,blat.proc3825170.chain_3636	3
scaffold_6	alt_donor	3320656	3320657	-	asmbl_48246	none	STRG.7338.1,blat.proc3825150.chain_3423	2	STRG.7338.4,blat.proc3825150.chain_3424,blat.proc3825150.chain_3425	3
scaffold_25	spliced_intron	8475662	8475908	+	asmbl_33737,asmbl_33738	none	STRG.27679.1,blat.proc3825178.chain_789,blat.proc3825178.chain_792	3	blat.proc3825178.chain_791	1
scaffold_18	alt_acceptor	1997986	1997987	-	asmbl_19682	none	STRG.21103.1,blat.proc3825158.chain_2053	2	STRG.21103.2	1
scaffold_21	alt_donor	730780	730781	+	asmbl_28291	none	STRG.23764.5,Trinity_GG_30474_c0_g2_i1,blat.proc3825176.chain_971	3	STRG.23764.2,STRG.23764.4,Trinity_GG_30474_c0_g1_i2,blat.proc3825176.chain_969	4
scaffold_6	alternate_exon	13263892	13272723	+	asmbl_47516,asmbl_47517	none	STRG.8090.2,STRG.8090.3	2	STRG.8090.4,STRG.8090.5,blat.proc3825168.chain_517,blat.proc3825168.chain_518	4
scaffold_3	retained_exon	10276587	10276769	+	asmbl_40247,asmbl_40250	none	STRG.3467.1,blat.proc3825164.chain_3728,blat.proc3825164.chain_3734	3	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3
scaffold_6	spliced_intron	13657305	13657555	-	asmbl_48927,asmbl_48928,asmbl_48930	none	STRG.8106.1,STRG.8106.3,blat.proc3825152.chain_524,blat.proc3825152.chain_525,blat.proc3825152.chain_526	5	blat.proc3825152.chain_527	1
scaffold_10	starts_in_intron	12798117	12798117	-	asmbl_4825	none	blat.proc3825154.chain_1467	1	STRG.12868.2,STRG.12868.3,blat.proc3825154.chain_1466	3
scaffold_9	skipped_exon	3387052	3388058	+	asmbl_53900	none	STRG.10946.1,Trinity_GG_23401_c0_g1_i1,blat.proc3825168.chain_3471	3	blat.proc3825168.chain_3472	1
scaffold_14	alternate_exon	2249561	2249588	-	asmbl_12924,asmbl_12926	none	STRG.16830.1,Trinity_GG_9429_c0_g1_i1,Trinity_GG_9429_c0_g1_i3,blat.proc3825156.chain_1650,blat.proc3825156.chain_1652	5	STRG.16830.2,Trinity_GG_9429_c0_g1_i2,blat.proc3825156.chain_1651	3
scaffold_7	alt_donor	8281908	8281909	+	asmbl_49980,asmbl_49983	none	STRG.9062.1,blat.proc3825168.chain_1490,blat.proc3825168.chain_1492	3	blat.proc3825168.chain_1489	1
scaffold_24	alternate_exon	6442831	6444640	+	asmbl_32310,asmbl_32311,asmbl_32312,asmbl_32313	none	STRG.26699.1,STRG.26699.2,blat.proc3825176.chain_3610,blat.proc3825176.chain_3613,blat.proc3825176.chain_3617,blat.proc3825176.chain_3618	6	blat.proc3825176.chain_3620	1
scaffold_3	alt_donor	11454767	11454768	-	asmbl_39166	none	blat.proc3825148.chain_3377	1	STRG.3580.2,blat.proc3825148.chain_3376,blat.proc3825148.chain_3378	3
scaffold_16	retained_intron	810291	810378	-	asmbl_16909,asmbl_16910	none	blat.proc3825158.chain_129,blat.proc3825158.chain_131	2	STRG.19064.1,STRG.19064.2,STRG.19064.3,blat.proc3825158.chain_128,blat.proc3825158.chain_130,blat.proc3825158.chain_132	6
scaffold_7	spliced_intron	4884544	4884813	+	asmbl_49753	none	STRG.8834.2,blat.proc3825168.chain_1305	2	STRG.8834.1,blat.proc3825168.chain_1303	2
scaffold_3	retained_intron	19407196	19407399	-	asmbl_39649	none	blat.proc3825150.chain_251	1	STRG.4086.2	1
scaffold_2	spliced_intron	943318	943692	+	asmbl_24165	none	Trinity_GG_18238_c3_g1_i1,blat.proc3825164.chain_1780	2	Trinity_GG_18238_c3_g1_i2,blat.proc3825164.chain_1781	2
scaffold_24	retained_intron	9116511	9116746	+	asmbl_32513,asmbl_32514	none	blat.proc3825178.chain_179,blat.proc3825178.chain_180	2	blat.proc3825178.chain_173	1
scaffold_428	starts_in_intron	483	483	-	asmbl_43691	none	blat.proc3825162.chain_3445	1	STRG.30325.1	1
scaffold_15	spliced_intron	13324710	13324894	+	asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15634,asmbl_15635	none	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389	7	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	7
scaffold_1	retained_intron	20135278	20135349	-	asmbl_1172,asmbl_1177	none	STRG.1386.1,Trinity_GG_765_c0_g1_i2	2	blat.proc3825148.chain_1398	1
scaffold_14	alternate_exon	7430265	7430328	+	asmbl_12157,asmbl_12158	none	STRG.17180.2,STRG.17180.3,blat.proc3825172.chain_1872,blat.proc3825172.chain_1873	4	STRG.17180.1	1
scaffold_6	alt_acceptor	2902540	2902541	+	asmbl_46781,asmbl_46782	none	STRG.7291.1,STRG.7291.2,blat.proc3825166.chain_3492	3	STRG.7291.3,STRG.7291.4,blat.proc3825166.chain_3491	3
scaffold_16	retained_intron	2215678	2215859	+	asmbl_16125	none	blat.proc3825172.chain_3745	1	STRG.19123.1,Trinity_GG_27776_c0_g1_i2,blat.proc3825172.chain_3744	3
scaffold_28	spliced_intron	8481657	8481677	+	asmbl_37754	none	STRG.29925.2	1	STRG.29925.1,blat.proc3825178.chain_3030	2
scaffold_13	starts_in_intron	8268935	8268935	+	asmbl_11113	none	blat.proc3825172.chain_889	1	STRG.16117.1,STRG.16117.2,blat.proc3825172.chain_890	3
scaffold_15	starts_in_intron	3144679	3144679	-	asmbl_14078	none	blat.proc3825156.chain_2928	1	STRG.18094.1,blat.proc3825156.chain_2926,blat.proc3825156.chain_2927	3
scaffold_12	starts_in_intron	15425462	15425462	-	asmbl_9081	none	blat.proc3825156.chain_197	1	STRG.15346.1,STRG.15346.2,blat.proc3825156.chain_194,blat.proc3825156.chain_195,blat.proc3825156.chain_196	5
scaffold_18	ends_in_intron	816526	816526	-	asmbl_19597	none	blat.proc3825158.chain_1969	1	blat.proc3825158.chain_1968	1
scaffold_16	alt_acceptor	303886	303887	-	asmbl_16849	none	STRG.19021.1	1	STRG.19021.2	1
scaffold_7	alt_acceptor	6642014	6642015	-	asmbl_50926	none	STRG.8938.2	1	STRG.8938.1,blat.proc3825152.chain_1364	2
scaffold_8	retained_intron	8607259	8607362	-	asmbl_51967	none	blat.proc3825152.chain_2395	1	STRG.10123.1,blat.proc3825152.chain_2393	2
scaffold_13	retained_intron	1229434	1229825	+	asmbl_10546,asmbl_10549	none	STRG.15494.1,STRG.15494.3,Trinity_GG_25867_c1_g1_i2,Trinity_GG_25867_c3_g1_i1,blat.proc3825172.chain_314,blat.proc3825172.chain_316	6	STRG.15494.2	1
scaffold_1	alt_acceptor	6126852	6126853	-	asmbl_317,asmbl_318	none	STRG.415.1,STRG.415.2,blat.proc3825148.chain_392	3	blat.proc3825148.chain_391	1
scaffold_26	retained_intron	9082921	9083032	-	asmbl_35763	none	STRG.28473.4,Trinity_GG_15928_c0_g1_i1,blat.proc3825162.chain_1683	3	STRG.28473.1,STRG.28473.2,STRG.28473.3,blat.proc3825162.chain_1681,blat.proc3825162.chain_1682,blat.proc3825162.chain_1684	6
scaffold_18	retained_intron	9164378	9164478	+	asmbl_20876	none	Trinity_GG_29221_c0_g1_i1,blat.proc3825174.chain_2593	2	STRG.21560.1,Trinity_GG_29221_c0_g1_i2,blat.proc3825174.chain_2592	3
scaffold_5	alt_acceptor	19146961	19146962	-	asmbl_44895	none	STRG.7027.1,blat.proc3825150.chain_3122	2	STRG.7027.2	1
scaffold_3	retained_intron	14183210	14183724	-	asmbl_39327,asmbl_39328,asmbl_39331,asmbl_39333	none	STRG.3761.1,STRG.3761.3,STRG.3761.5,Trinity_GG_2073_c0_g1_i3,blat.proc3825148.chain_3663	5	STRG.3761.2,STRG.3761.4,Trinity_GG_2073_c0_g1_i7,blat.proc3825148.chain_3665	4
scaffold_26	starts_in_intron	8987269	8987269	+	asmbl_35191	none	blat.proc3825178.chain_1587	1	STRG.28461.1,STRG.28461.2,Trinity_GG_33062_c0_g1_i1,blat.proc3825178.chain_1588	4
scaffold_9	retained_intron	17469882	17470142	-	asmbl_55647	none	STRG.11840.1,blat.proc3825154.chain_348	2	STRG.11840.2	1
scaffold_28	retained_intron	5233036	5233314	-	asmbl_38273,asmbl_38274	none	blat.proc3825162.chain_2781,blat.proc3825162.chain_2786	2	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2780,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	6
scaffold_6	alternate_exon	17188309	17188423	-	asmbl_49180	none	STRG.8430.2,Trinity_GG_4809_c0_g1_i1,blat.proc3825152.chain_870	3	STRG.8430.1,Trinity_GG_4809_c0_g1_i2,Trinity_GG_4809_c0_g1_i3,blat.proc3825152.chain_868,blat.proc3825152.chain_869	5
scaffold_21	retained_intron	8086347	8086431	-	asmbl_27888	none	STRG.24346.1,blat.proc3825160.chain_1497	2	STRG.24346.2,blat.proc3825160.chain_1496	2
scaffold_25	retained_exon	8698556	8698659	-	asmbl_34463	none	STRG.27695.2,blat.proc3825162.chain_1020	2	STRG.27695.3,STRG.27695.5,blat.proc3825162.chain_1023	3
scaffold_13	starts_in_intron	904551	904551	-	asmbl_9377,asmbl_9383	none	Trinity_GG_8651_c0_g1_i10,blat.proc3825156.chain_264,blat.proc3825156.chain_273	3	STRG.15470.1,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271,blat.proc3825156.chain_272	10
scaffold_12	ends_in_intron	15772745	15772745	-	asmbl_9101	none	STRG.15372.2,blat.proc3825156.chain_174	2	STRG.15372.1,blat.proc3825156.chain_175	2
scaffold_4	alt_donor	4497560	4497561	-	asmbl_42517	none	STRG.4351.1,blat.proc3825150.chain_590	2	blat.proc3825150.chain_591	1
scaffold_16	alternate_exon	12017989	12018159	-	asmbl_17380	none	STRG.19727.1,blat.proc3825158.chain_756	2	blat.proc3825158.chain_755	1
scaffold_5	starts_in_intron	8680946	8680946	-	asmbl_44225,asmbl_44226	none	STRG.6205.2,blat.proc3825150.chain_2389	2	STRG.6205.1,blat.proc3825150.chain_2388,blat.proc3825150.chain_2390	3
scaffold_20	ends_in_intron	5949193	5949193	-	asmbl_25805	none	Trinity_GG_12946_c2_g1_i1,blat.proc3825160.chain_297	2	STRG.23205.1,blat.proc3825160.chain_292,blat.proc3825160.chain_293	3
scaffold_25	spliced_intron	9431822	9432003	+	asmbl_33816	none	STRG.27757.3	1	Trinity_GG_32597_c1_g1_i2,blat.proc3825178.chain_799	2
scaffold_6	ends_in_intron	3806711	3806711	+	asmbl_46864,asmbl_46867,asmbl_46868	none	STRG.7383.1,STRG.7383.3,blat.proc3825166.chain_3604	3	STRG.7383.2,STRG.7383.4,STRG.7383.5	3
scaffold_1	alternate_exon	14607313	14607330	+	asmbl_2401	none	STRG.1061.1	1	STRG.1061.2	1
scaffold_25	retained_intron	4594574	4594648	+	asmbl_33525	none	STRG.27397.2,Trinity_GG_32387_c0_g1_i2,blat.proc3825178.chain_449	3	STRG.27397.1,Trinity_GG_32387_c0_g1_i1,blat.proc3825178.chain_448	3
scaffold_17	spliced_intron	8318412	8318617	+	asmbl_18966,asmbl_18971	none	STRG.20456.2,blat.proc3825174.chain_1200,blat.proc3825174.chain_1206	3	blat.proc3825174.chain_1203,blat.proc3825174.chain_1205	2
scaffold_11	retained_intron	9950767	9950860	-	asmbl_6970	none	blat.proc3825154.chain_2519	1	STRG.14013.2	1
scaffold_9	skipped_exon	9656031	9656875	+	asmbl_54223,asmbl_54224,asmbl_54225,asmbl_54226	none	STRG.11344.2,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_157	4	STRG.11344.1,blat.proc3825170.chain_155,blat.proc3825170.chain_158	3
scaffold_22	skipped_exon	5984784	5985349	-	asmbl_29300	none	STRG.24948.2	1	STRG.24948.3	1
scaffold_18	alt_acceptor	3733080	3733081	-	asmbl_19764	none	STRG.21185.2,blat.proc3825158.chain_2161	2	STRG.21185.1,blat.proc3825158.chain_2162	2
scaffold_13	alt_donor	8268589	8268590	+	asmbl_11112	none	STRG.16117.2	1	STRG.16117.1,blat.proc3825172.chain_890	2
scaffold_9	starts_in_intron	9451062	9451062	-	asmbl_55174	none	Trinity_GG_6263_c0_g1_i3,blat.proc3825152.chain_3545	2	STRG.11304.1,STRG.11304.2,blat.proc3825152.chain_3543,blat.proc3825152.chain_3544	4
scaffold_4	alt_acceptor	3883859	3883860	-	asmbl_42461	none	STRG.4296.3	1	STRG.4296.1,STRG.4296.2,STRG.4296.4,blat.proc3825150.chain_530,blat.proc3825150.chain_531	5
scaffold_13	alt_donor	4378356	4378357	+	asmbl_10785,asmbl_10787	none	STRG.15764.2,STRG.15764.4	2	STRG.15764.1,STRG.15764.3,STRG.15764.5	3
scaffold_12	spliced_intron	14990698	14991070	-	asmbl_9025	none	STRG.15298.2,Trinity_GG_8566_c0_g1_i4,blat.proc3825156.chain_119	3	Trinity_GG_8566_c0_g1_i5,blat.proc3825156.chain_117	2
scaffold_13	spliced_intron	2274959	2277261	-	asmbl_9444	none	STRG.15548.2,blat.proc3825156.chain_399	2	STRG.15548.3,STRG.15548.4,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395	6
scaffold_5	alt_donor	16521059	16521060	-	asmbl_44752	none	STRG.6842.4	1	STRG.6842.1,STRG.6842.2,blat.proc3825150.chain_3015,blat.proc3825150.chain_3017	4
scaffold_6	spliced_intron	3779018	3779105	+	asmbl_46851,asmbl_46854,asmbl_46855	none	STRG.7375.1,STRG.7375.3,blat.proc3825166.chain_3622,blat.proc3825166.chain_3623,blat.proc3825166.chain_3625,blat.proc3825166.chain_3627	6	STRG.7375.2,blat.proc3825166.chain_3620,blat.proc3825166.chain_3624	3
scaffold_6	spliced_intron	298817	299072	+	asmbl_46648,asmbl_46649	none	STRG.7091.2,STRG.7091.3,Trinity_GG_21228_c0_g1_i3,Trinity_GG_21228_c0_g1_i4,blat.proc3825166.chain_3317,blat.proc3825166.chain_3318	6	STRG.7091.1,Trinity_GG_21228_c0_g1_i2,blat.proc3825166.chain_3319	3
scaffold_1	ends_in_intron	14309278	14309278	-	asmbl_886	none	STRG.1022.1,blat.proc3825148.chain_1015	2	blat.proc3825148.chain_1014	1
scaffold_13	starts_in_intron	3337488	3337488	+	asmbl_10681	none	blat.proc3825172.chain_331	1	STRG.15646.1,STRG.15646.2,blat.proc3825172.chain_330	3
scaffold_26	alternate_exon	435600	435789	+	asmbl_34687	none	blat.proc3825178.chain_953	1	blat.proc3825178.chain_956	1
scaffold_17	skipped_exon	1302758	1303353	-	asmbl_17693	none	STRG.19975.2,blat.proc3825158.chain_1034	2	STRG.19975.1,blat.proc3825158.chain_1032	2
scaffold_15	spliced_intron	4493364	4493480	+	asmbl_15140,asmbl_15142,asmbl_15143,asmbl_15145,asmbl_15146,asmbl_15148	none	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2858	8	blat.proc3825172.chain_2857	1
scaffold_10	ends_in_intron	16529554	16529554	+	asmbl_3717	none	blat.proc3825170.chain_1650	1	STRG.13128.1,blat.proc3825170.chain_1651,blat.proc3825170.chain_1652,blat.proc3825170.chain_1653,blat.proc3825170.chain_1654	5
scaffold_11	alternate_exon	11045348	11045395	-	asmbl_7011	none	STRG.14068.2	1	STRG.14068.1,STRG.14068.3	2
scaffold_13	alt_donor	12002386	12002387	+	asmbl_11321	none	STRG.16338.2,blat.proc3825172.chain_1143	2	STRG.16338.1,blat.proc3825172.chain_1140	2
scaffold_6	alternate_exon	2900705	2900813	-	asmbl_48186	none	STRG.7290.1,blat.proc3825150.chain_3392	2	blat.proc3825150.chain_3393	1
scaffold_2	ends_in_intron	10872867	10872867	+	asmbl_24742	none	blat.proc3825164.chain_2440	1	STRG.2245.1,STRG.2245.2,blat.proc3825164.chain_2436,blat.proc3825164.chain_2437	4
scaffold_14	retained_intron	3160506	3161274	+	asmbl_11913	none	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605	2	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2
scaffold_8	starts_in_intron	11300029	11300029	+	asmbl_53220	none	Trinity_GG_23079_c0_g1_i1,blat.proc3825168.chain_2927	2	STRG.10343.1,STRG.10343.2,STRG.10343.3,Trinity_GG_23079_c0_g1_i2,Trinity_GG_23079_c0_g1_i3,Trinity_GG_23079_c0_g1_i4,blat.proc3825168.chain_2924,blat.proc3825168.chain_2925,blat.proc3825168.chain_2926	9
scaffold_15	spliced_intron	12421366	12421557	+	asmbl_15558,asmbl_15562	none	STRG.18696.1,blat.proc3825172.chain_3324,blat.proc3825172.chain_3325	3	blat.proc3825172.chain_3323,blat.proc3825172.chain_3326	2
scaffold_19	alternate_exon	8894427	8894455	-	asmbl_22321	none	STRG.22346.2	1	STRG.22346.1,blat.proc3825158.chain_3126	2
scaffold_11	spliced_intron	1985477	1985515	+	asmbl_5350	none	STRG.13361.1	1	blat.proc3825154.chain_1937	1
scaffold_20	starts_in_intron	11146448	11146448	+	asmbl_27016	none	Trinity_GG_30351_c0_g1_i1,blat.proc3825176.chain_749	2	STRG.23640.1,STRG.23640.2,STRG.23640.3,Trinity_GG_30351_c0_g1_i3,Trinity_GG_30351_c0_g1_i5,blat.proc3825176.chain_748,blat.proc3825176.chain_752	7
scaffold_21	retained_intron	495998	496253	-	asmbl_27329	none	Trinity_GG_13235_c0_g1_i6,blat.proc3825160.chain_879	2	STRG.23744.1,Trinity_GG_13235_c0_g1_i2,Trinity_GG_13235_c0_g1_i5,blat.proc3825160.chain_880,blat.proc3825160.chain_882	5
scaffold_22	spliced_intron	4211178	4211284	+	asmbl_29975	none	STRG.24837.1	1	Trinity_GG_31039_c0_g1_i2,blat.proc3825176.chain_1936,blat.proc3825176.chain_1937	3
scaffold_2	retained_intron	19881129	19881471	+	asmbl_25298	none	STRG.2834.2,Trinity_GG_18872_c0_g1_i1,blat.proc3825164.chain_3022	3	STRG.2834.1,Trinity_GG_18872_c0_g1_i2,blat.proc3825164.chain_3023	3
scaffold_22	alt_donor	5934188	5934189	+	asmbl_30073	none	STRG.24944.2	1	STRG.24944.1	1
scaffold_1	alternate_exon	3605865	3605911	+	asmbl_1612	none	STRG.227.2	1	STRG.227.1,blat.proc3825164.chain_309	2
scaffold_1	alternate_exon	6829325	6830778	-	asmbl_386	none	STRG.474.3	1	blat.proc3825148.chain_464	1
scaffold_24	retained_intron	9121693	9121853	+	asmbl_32517,asmbl_32518	none	STRG.26939.2,blat.proc3825178.chain_97,blat.proc3825178.chain_98	3	blat.proc3825178.chain_96	1
scaffold_25	skipped_exon	4117889	4118352	+	asmbl_33475	none	blat.proc3825178.chain_441	1	STRG.27345.1,STRG.27345.2,blat.proc3825178.chain_442	3
scaffold_4	starts_in_intron	4554644	4554644	+	asmbl_41290	none	Trinity_GG_19722_c0_g1_i2,blat.proc3825166.chain_780	2	STRG.4367.1,STRG.4367.3,blat.proc3825166.chain_778,blat.proc3825166.chain_779	4
scaffold_14	retained_intron	15469046	15469737	+	asmbl_12603	none	blat.proc3825172.chain_2424	1	STRG.17781.1,Trinity_GG_27042_c0_g1_i6,blat.proc3825172.chain_2425	3
scaffold_25	starts_in_intron	9713426	9713426	+	asmbl_33841	none	blat.proc3825178.chain_873	1	STRG.27784.1,blat.proc3825178.chain_874	2
scaffold_2	retained_intron	7924499	7924931	-	asmbl_23299	none	blat.proc3825148.chain_2079	1	STRG.2089.1,blat.proc3825148.chain_2075,blat.proc3825148.chain_2077,blat.proc3825148.chain_2078	4
scaffold_14	alt_donor	6277029	6277030	-	asmbl_13118	none	blat.proc3825156.chain_1799	1	STRG.17077.1,STRG.17077.2,STRG.17077.3,STRG.17077.4,blat.proc3825156.chain_1798,blat.proc3825156.chain_1800,blat.proc3825156.chain_1801	7
scaffold_6	alternate_exon	12990049	13003403	-	asmbl_48856,asmbl_48857,asmbl_48858,asmbl_48859	none	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,Trinity_GG_4595_c0_g1_i2,blat.proc3825152.chain_489,blat.proc3825152.chain_490,blat.proc3825152.chain_492,blat.proc3825152.chain_495	9	STRG.8068.7,blat.proc3825152.chain_494	2
scaffold_25	spliced_intron	3725793	3725904	+	asmbl_33457,asmbl_33458	none	STRG.27323.1,STRG.27323.2,blat.proc3825178.chain_408,blat.proc3825178.chain_409	4	STRG.27323.3	1
scaffold_21	alternate_exon	7506485	7506801	-	asmbl_27829,asmbl_27832	none	STRG.24282.1,STRG.24282.4,blat.proc3825160.chain_1439	3	STRG.24282.3,blat.proc3825160.chain_1440	2
scaffold_11	starts_in_intron	853460	853460	+	asmbl_5310	none	blat.proc3825170.chain_1863	1	STRG.13285.1,Trinity_GG_24628_c0_g1_i5,blat.proc3825170.chain_1859,blat.proc3825170.chain_1860	4
scaffold_6	spliced_intron	18025101	18025221	-	asmbl_49221	none	STRG.8491.1,blat.proc3825152.chain_912	2	blat.proc3825152.chain_911	1
scaffold_2	alternate_exon	29700	29877	+	asmbl_24061,asmbl_24062,asmbl_24063,asmbl_24065	none	STRG.1496.3,Trinity_GG_18174_c0_g1_i1,Trinity_GG_18174_c0_g1_i10,blat.proc3825164.chain_1639,blat.proc3825164.chain_1643,blat.proc3825164.chain_1644,blat.proc3825164.chain_1645	7	STRG.1496.1,Trinity_GG_18174_c0_g1_i4,blat.proc3825164.chain_1641	3
scaffold_25	starts_in_intron	4873277	4873277	-	asmbl_34230,asmbl_34231	none	STRG.27422.2,blat.proc3825162.chain_777,blat.proc3825162.chain_778	3	STRG.27422.1	1
scaffold_5	alt_donor	7740212	7740213	+	asmbl_45505,asmbl_45506	none	STRG.6160.1,STRG.6160.3,blat.proc3825166.chain_2297	3	STRG.6160.2	1
scaffold_3	starts_in_intron	18145348	18145348	-	asmbl_39595	none	STRG.4029.1	1	STRG.4029.3,blat.proc3825150.chain_208	2
scaffold_7	starts_in_intron	8614846	8614846	+	asmbl_50031	none	blat.proc3825168.chain_1616	1	STRG.9097.1,STRG.9097.2,blat.proc3825168.chain_1613,blat.proc3825168.chain_1615	4
scaffold_9	alt_acceptor	13300118	13300119	-	asmbl_55422,asmbl_55423	none	STRG.11628.2,STRG.11628.3	2	STRG.11628.1,STRG.11628.4,STRG.11628.5	3
scaffold_14	spliced_intron	8452011	8452120	-	asmbl_13316	none	Trinity_GG_9713_c0_g1_i2	1	Trinity_GG_9713_c0_g1_i3	1
scaffold_6	starts_in_intron	5681907	5681907	+	asmbl_46972	none	Trinity_GG_21401_c0_g1_i3,blat.proc3825166.chain_3667	2	STRG.7529.1,Trinity_GG_21401_c0_g1_i1,blat.proc3825166.chain_3666	3
scaffold_5	alt_donor	4696342	4696343	+	asmbl_45285,asmbl_45286	none	blat.proc3825166.chain_2149,blat.proc3825166.chain_2150	2	STRG.5925.2,STRG.5925.3	2
scaffold_19	spliced_intron	2649578	2649708	+	asmbl_21267	none	STRG.21952.1,blat.proc3825174.chain_2989	2	blat.proc3825174.chain_2990	1
scaffold_18	starts_in_intron	7741114	7741114	-	asmbl_19977	none	blat.proc3825158.chain_2369	1	STRG.21480.1,blat.proc3825158.chain_2370	2
scaffold_4	spliced_intron	6294036	6294226	+	asmbl_41387	none	STRG.4499.1,blat.proc3825166.chain_958	2	blat.proc3825166.chain_957	1
scaffold_20	starts_in_intron	8449045	8449045	+	asmbl_26779	none	Trinity_GG_30210_c0_g1_i3,blat.proc3825176.chain_534	2	STRG.23395.1	1
scaffold_4	alt_donor	16481292	16481293	-	asmbl_43176	none	STRG.5225.3,blat.proc3825150.chain_1403	2	STRG.5225.1,blat.proc3825150.chain_1404,blat.proc3825150.chain_1405	3
scaffold_16	spliced_intron	5395039	5395131	+	asmbl_16211,asmbl_16213	none	STRG.19288.1,Trinity_GG_27867_c0_g1_i3,blat.proc3825174.chain_180,blat.proc3825174.chain_181	4	blat.proc3825174.chain_183	1
scaffold_19	ends_in_intron	12823839	12823839	-	asmbl_22551	none	Trinity_GG_12585_c1_g1_i1,blat.proc3825158.chain_3418	2	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3409,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3412,blat.proc3825158.chain_3413,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	9
scaffold_16	starts_in_intron	14497745	14497745	-	asmbl_17443	none	blat.proc3825158.chain_841	1	STRG.19827.1,blat.proc3825158.chain_842	2
scaffold_11	retained_intron	9018627	9018713	-	asmbl_6903	none	Trinity_GG_7749_c0_g1_i4,blat.proc3825154.chain_2411	2	STRG.13940.1,STRG.13940.2,Trinity_GG_7749_c0_g1_i6,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406,blat.proc3825154.chain_2407,blat.proc3825154.chain_2408,blat.proc3825154.chain_2409,blat.proc3825154.chain_2410	9
scaffold_2	alt_acceptor	7266607	7266608	-	asmbl_23243	none	STRG.2061.2	1	STRG.2061.1,Trinity_GG_1102_c0_g1_i1,blat.proc3825148.chain_1989	3
scaffold_9	alternate_exon	9870462	9871452	-	asmbl_55241	none	STRG.11356.4,Trinity_GG_6280_c2_g1_i1,blat.proc3825152.chain_3585,blat.proc3825152.chain_3588	4	STRG.11356.1,Trinity_GG_6280_c0_g1_i6,blat.proc3825152.chain_3582	3
scaffold_13	alt_acceptor	2072331	2072332	+	asmbl_10578,asmbl_10579	none	STRG.15540.1,STRG.15540.3,blat.proc3825172.chain_305	3	STRG.15540.2	1
scaffold_6	alternate_exon	13960885	13960931	+	asmbl_47554,asmbl_47556	none	STRG.8150.2,blat.proc3825168.chain_625,blat.proc3825168.chain_626	3	STRG.8150.1	1
scaffold_5	alternate_exon	10654078	10655800	+	asmbl_45686	none	STRG.6347.1,blat.proc3825166.chain_2562	2	STRG.6347.2	1
scaffold_19	retained_intron	13155009	13155525	-	asmbl_22607	none	STRG.22639.3	1	STRG.22639.1,blat.proc3825158.chain_3472	2
scaffold_5	alt_donor	5972401	5972402	+	asmbl_45384	none	STRG.6011.2	1	blat.proc3825166.chain_2242	1
scaffold_20	retained_exon	12095382	12095665	-	asmbl_26221	none	STRG.23707.3,blat.proc3825160.chain_787	2	STRG.23707.1	1
scaffold_5	spliced_intron	16519694	16519798	-	asmbl_44749,asmbl_44750,asmbl_44752	none	STRG.6842.1,STRG.6842.2,STRG.6842.4,blat.proc3825150.chain_3015,blat.proc3825150.chain_3017	5	Trinity_GG_3836_c0_g2_i1,blat.proc3825150.chain_3018	2
scaffold_14	skipped_exon	11688000	11688456	-	asmbl_13525	none	STRG.17516.3	1	STRG.17516.1,STRG.17516.2,blat.proc3825156.chain_2313,blat.proc3825156.chain_2315,blat.proc3825156.chain_2316	5
scaffold_18	alt_acceptor	8593259	8593260	+	asmbl_20846	none	STRG.21525.1,blat.proc3825174.chain_2586	2	STRG.21525.3	1
scaffold_21	retained_intron	6618853	6618996	+	asmbl_28675	none	Trinity_GG_30735_c0_g2_i2,blat.proc3825176.chain_1436	2	STRG.24188.1,STRG.24188.2,Trinity_GG_30735_c0_g1_i2,Trinity_GG_30735_c0_g2_i3,blat.proc3825176.chain_1431,blat.proc3825176.chain_1434,blat.proc3825176.chain_1435,blat.proc3825176.chain_1437	8
scaffold_2	skipped_exon	17613187	17615255	+	asmbl_25187	none	STRG.2653.3	1	STRG.2653.1,STRG.2653.2,Trinity_GG_18824_c1_g1_i1,blat.proc3825164.chain_2942,blat.proc3825164.chain_2943,blat.proc3825164.chain_2945	6
scaffold_21	alt_donor	3162117	3162118	+	asmbl_28456,asmbl_28457,asmbl_28458,asmbl_28464,asmbl_28466,asmbl_28467,asmbl_28470	none	STRG.23959.1,STRG.23959.2,STRG.23959.3,blat.proc3825176.chain_1132,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139	8	STRG.23959.4,STRG.23959.5,STRG.23959.6,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	5
scaffold_9	spliced_intron	8396407	8396490	+	asmbl_54166,asmbl_54167,asmbl_54168,asmbl_54170,asmbl_54171,asmbl_54172,asmbl_54173	none	STRG.11261.1,STRG.11261.2,STRG.11261.3,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_59,blat.proc3825170.chain_61,blat.proc3825170.chain_62	8	Trinity_GG_23603_c0_g1_i5,blat.proc3825170.chain_60	2
scaffold_11	starts_in_intron	16466643	16466643	-	asmbl_7222	none	blat.proc3825154.chain_2815	1	STRG.14346.2,STRG.14346.3,blat.proc3825154.chain_2814	3
scaffold_15	starts_in_intron	5139883	5139883	+	asmbl_15189	none	blat.proc3825172.chain_2878	1	STRG.18217.1,blat.proc3825172.chain_2879	2
scaffold_28	alt_donor	3735259	3735260	-	asmbl_38161,asmbl_38162,asmbl_38163,asmbl_38164,asmbl_38165,asmbl_38166	none	STRG.29587.1,STRG.29587.2,STRG.29587.4,blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2739	6	STRG.29587.3,blat.proc3825162.chain_2736	2
scaffold_1	alt_donor	5192247	5192248	-	asmbl_239	none	STRG.325.1,blat.proc3825148.chain_302	2	STRG.325.2	1
scaffold_16	alt_acceptor	14546061	14546062	-	asmbl_17460	none	blat.proc3825158.chain_902	1	blat.proc3825158.chain_900,blat.proc3825158.chain_901	2
scaffold_10	retained_intron	13544278	13544650	-	asmbl_4905	none	Trinity_GG_7251_c0_g1_i1,Trinity_GG_7251_c0_g2_i2,blat.proc3825154.chain_1573,blat.proc3825154.chain_1575	4	STRG.12954.1,blat.proc3825154.chain_1574,blat.proc3825154.chain_1576	3
scaffold_8	retained_exon	13133094	13133135	-	asmbl_52267	none	blat.proc3825152.chain_2749	1	STRG.10488.1,blat.proc3825152.chain_2748	2
scaffold_13	ends_in_intron	6104664	6104664	+	asmbl_10911	none	STRG.15914.2,Trinity_GG_26048_c0_g1_i2,blat.proc3825172.chain_640	3	STRG.15914.1,Trinity_GG_26048_c0_g1_i3,blat.proc3825172.chain_639	3
scaffold_11	starts_in_intron	11776048	11776048	-	asmbl_7028	none	blat.proc3825154.chain_2638	1	STRG.14097.1,blat.proc3825154.chain_2637	2
scaffold_7	ends_in_intron	15647882	15647882	+	asmbl_50454	none	blat.proc3825168.chain_2094	1	STRG.9559.1,STRG.9559.2,STRG.9559.3,blat.proc3825168.chain_2088,blat.proc3825168.chain_2089,blat.proc3825168.chain_2090,blat.proc3825168.chain_2092	7
scaffold_7	alt_acceptor	6641990	6641991	-	asmbl_50925	none	STRG.8938.1,blat.proc3825152.chain_1364	2	STRG.8938.2	1
scaffold_15	starts_in_intron	9867441	9867441	+	asmbl_15424	none	blat.proc3825172.chain_3111	1	STRG.18505.1,STRG.18505.2,Trinity_GG_27427_c0_g1_i4,blat.proc3825172.chain_3106,blat.proc3825172.chain_3107,blat.proc3825172.chain_3108	6
scaffold_1	alt_donor	4577548	4577549	-	asmbl_199	none	STRG.285.6	1	STRG.285.1,blat.proc3825148.chain_154,blat.proc3825148.chain_155,blat.proc3825148.chain_159,blat.proc3825148.chain_160	5
scaffold_4	alt_acceptor	18117238	18117239	-	asmbl_43349	none	STRG.5417.2	1	STRG.5417.1	1
scaffold_9	starts_in_intron	9734052	9734052	+	asmbl_54245	none	STRG.11353.4,Trinity_GG_23656_c0_g1_i3,Trinity_GG_23656_c0_g1_i5	3	STRG.11353.1,STRG.11353.2,blat.proc3825170.chain_200	3
scaffold_5	spliced_intron	15462675	15462768	-	asmbl_44675,asmbl_44677	none	STRG.6732.1,STRG.6732.2,blat.proc3825150.chain_2873	3	blat.proc3825150.chain_2874	1
scaffold_16	spliced_intron	6534625	6536084	+	asmbl_16310	none	STRG.19378.2,Trinity_GG_27918_c0_g1_i2,blat.proc3825174.chain_290	3	STRG.19378.1,Trinity_GG_27918_c0_g1_i1,Trinity_GG_27918_c0_g1_i4,blat.proc3825174.chain_289,blat.proc3825174.chain_291	5
scaffold_8	skipped_exon	16502745	16503680	-	asmbl_52403,asmbl_52409,asmbl_52411,asmbl_52413,asmbl_52414,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52421,asmbl_52422	none	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,Trinity_GG_5934_c0_g1_i12,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2935,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	13	STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	5
scaffold_4	retained_intron	13075747	13075881	+	asmbl_41775,asmbl_41776,asmbl_41777,asmbl_41778,asmbl_41779,asmbl_41781	none	STRG.4947.1,STRG.4947.2,STRG.4947.3,STRG.4947.5,blat.proc3825166.chain_1379,blat.proc3825166.chain_1380,blat.proc3825166.chain_1381,blat.proc3825166.chain_1382	8	STRG.4947.4	1
scaffold_6	alternate_exon	2930152	2930399	-	asmbl_48195	none	STRG.7297.2,blat.proc3825150.chain_3332	2	STRG.7297.1,STRG.7297.4,blat.proc3825150.chain_3331	3
scaffold_2	alt_acceptor	2516652	2516653	-	asmbl_22899	none	STRG.1691.3	1	STRG.1691.1,STRG.1691.2,blat.proc3825148.chain_1653	3
scaffold_12	alt_acceptor	11951805	11951806	-	asmbl_8839	none	STRG.15111.1	1	STRG.15111.2	1
scaffold_19	retained_intron	8870718	8870824	-	asmbl_22316	none	blat.proc3825158.chain_3144	1	STRG.22342.1,blat.proc3825158.chain_3143	2
scaffold_114	retained_exon	12561	12662	+	asmbl_7407	none	STRG.30151.2	1	STRG.30151.1	1
scaffold_7	alt_acceptor	1219914	1219915	+	asmbl_49583	none	STRG.8629.2,Trinity_GG_22054_c0_g1_i2	2	STRG.8629.1,Trinity_GG_22054_c0_g1_i4	2
scaffold_8	retained_intron	11275623	11276066	+	asmbl_53212	none	Trinity_GG_23069_c0_g1_i4,blat.proc3825168.chain_2913	2	STRG.10346.1,STRG.10346.2,STRG.10346.3,STRG.10346.4,Trinity_GG_23069_c0_g1_i1,Trinity_GG_23069_c0_g1_i2,blat.proc3825168.chain_2911,blat.proc3825168.chain_2912,blat.proc3825168.chain_2914	9
scaffold_20	ends_in_intron	9962882	9962882	-	asmbl_26063	none	Trinity_GG_13133_c1_g1_i2,blat.proc3825160.chain_630	2	STRG.23540.2,STRG.23540.3	2
scaffold_13	starts_in_intron	8836725	8836725	+	asmbl_11151	none	Trinity_GG_26195_c0_g1_i2,blat.proc3825172.chain_945	2	STRG.16160.1,blat.proc3825172.chain_944	2
scaffold_19	alt_acceptor	827107	827108	-	asmbl_22009,asmbl_22010	none	STRG.21882.4,blat.proc3825158.chain_2702	2	STRG.21882.1,STRG.21882.2,STRG.21882.3,STRG.21882.5,blat.proc3825158.chain_2703,blat.proc3825158.chain_2705	6
scaffold_23	starts_in_intron	10209241	10209241	+	asmbl_31840,asmbl_31842	none	STRG.26229.3,blat.proc3825176.chain_3229	2	STRG.26229.1,STRG.26229.2,blat.proc3825176.chain_3227,blat.proc3825176.chain_3230	4
scaffold_1	retained_intron	14427728	14428466	-	asmbl_923	none	STRG.1045.4,blat.proc3825148.chain_1050	2	STRG.1045.2,blat.proc3825148.chain_1046	2
scaffold_5	retained_intron	10314896	10314969	+	asmbl_45676	none	Trinity_GG_20769_c0_g1_i2,blat.proc3825166.chain_2551	2	STRG.6331.1,Trinity_GG_20769_c0_g1_i1,blat.proc3825166.chain_2552,blat.proc3825166.chain_2553	4
scaffold_27	alt_acceptor	2548752	2548753	+	asmbl_36093	none	STRG.28732.3	1	STRG.28732.1	1
scaffold_13	retained_intron	5208212	5208652	+	asmbl_10831	none	Trinity_GG_26004_c0_g1_i2,blat.proc3825172.chain_552	2	STRG.15826.2	1
scaffold_18	alternate_exon	9685705	9686162	-	asmbl_20078,asmbl_20080	none	STRG.21580.1,STRG.21580.2,blat.proc3825158.chain_2490	3	STRG.21580.3	1
scaffold_27	alt_donor	638514	638515	-	asmbl_36710,asmbl_36712	none	STRG.28585.1,Trinity_GG_16002_c1_g1_i6,blat.proc3825162.chain_1843	3	Trinity_GG_16002_c1_g1_i5,blat.proc3825162.chain_1842	2
scaffold_10	ends_in_intron	6092228	6092228	-	asmbl_4433	none	Trinity_GG_6944_c0_g1_i1,blat.proc3825154.chain_995	2	STRG.12437.1	1
scaffold_2	skipped_exon	10135861	10137642	+	asmbl_24699	none	STRG.2200.2,blat.proc3825164.chain_2407	2	STRG.2200.1,STRG.2200.3,blat.proc3825164.chain_2404,blat.proc3825164.chain_2406	4
scaffold_27	skipped_exon	3920125	3920693	-	asmbl_36939	none	STRG.28857.2	1	STRG.28857.1,blat.proc3825162.chain_2104	2
scaffold_2	alternate_exon	4133155	4140611	+	asmbl_24339	none	blat.proc3825164.chain_1927	1	Trinity_GG_18314_c0_g1_i2,blat.proc3825164.chain_1928	2
scaffold_16	ends_in_intron	213626	213626	+	asmbl_16008,asmbl_16009	none	STRG.19016.1,blat.proc3825172.chain_3675,blat.proc3825172.chain_3676	3	STRG.19016.2,blat.proc3825172.chain_3674	2
scaffold_21	starts_in_intron	10473918	10473918	+	asmbl_28875	none	Trinity_GG_30870_c2_g1_i2,blat.proc3825176.chain_1660	2	STRG.24515.1,blat.proc3825176.chain_1658,blat.proc3825176.chain_1659,blat.proc3825176.chain_1661	4
scaffold_2	alt_acceptor	20319554	20319555	+	asmbl_25322	none	STRG.2877.4	1	STRG.2877.5,blat.proc3825164.chain_3104,blat.proc3825164.chain_3105	3
scaffold_13	ends_in_intron	5131378	5131378	+	asmbl_10826	none	blat.proc3825172.chain_557	1	STRG.15817.1,STRG.15817.2,STRG.15817.3,blat.proc3825172.chain_558,blat.proc3825172.chain_559	5
scaffold_4	retained_intron	6294036	6294226	+	asmbl_41388	none	blat.proc3825166.chain_957	1	STRG.4499.1,blat.proc3825166.chain_958	2
scaffold_23	spliced_intron	5583740	5583837	+	asmbl_31590	none	STRG.25931.4	1	STRG.25931.3,blat.proc3825176.chain_2800	2
scaffold_20	alt_acceptor	11382669	11382670	+	asmbl_27034,asmbl_27037	none	STRG.23648.1,STRG.23648.3,Trinity_GG_30352_c0_g1_i1,blat.proc3825176.chain_757	4	STRG.23648.2,STRG.23648.4,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_759	6
scaffold_21	retained_intron	6490693	6490848	+	asmbl_28652	none	blat.proc3825176.chain_1386,blat.proc3825176.chain_1387	2	STRG.24171.1,STRG.24171.2,STRG.24171.3,blat.proc3825176.chain_1384,blat.proc3825176.chain_1385	5
scaffold_7	starts_in_intron	15032339	15032339	-	asmbl_51353	none	STRG.9526.3	1	STRG.9526.1,STRG.9526.2	2
scaffold_6	retained_intron	10916682	10916800	+	asmbl_47313	none	Trinity_GG_21658_c0_g1_i3,blat.proc3825168.chain_390	2	STRG.7909.3,blat.proc3825168.chain_386,blat.proc3825168.chain_389	3
scaffold_1	retained_intron	14305214	14305639	+	asmbl_2378	none	blat.proc3825164.chain_1215	1	STRG.1021.1,Trinity_GG_17936_c0_g1_i4,blat.proc3825164.chain_1213,blat.proc3825164.chain_1214	4
scaffold_2	spliced_intron	19521884	19522271	-	asmbl_23871	none	STRG.2811.2	1	STRG.2811.1,Trinity_GG_1543_c0_g1_i2,Trinity_GG_1543_c0_g2_i1,blat.proc3825148.chain_2747,blat.proc3825148.chain_2750	5
scaffold_10	alt_acceptor	6911504	6911505	+	asmbl_3252	none	STRG.12516.2,blat.proc3825170.chain_1079	2	STRG.12516.1	1
scaffold_1	alt_acceptor	20134860	20134861	-	asmbl_1170	none	STRG.1386.5	1	STRG.1386.1,STRG.1386.2,STRG.1386.6	3
scaffold_2	alt_donor	14369226	14369227	+	asmbl_24925	none	STRG.2437.2,blat.proc3825164.chain_2688	2	STRG.2437.1,blat.proc3825164.chain_2687	2
scaffold_7	spliced_intron	9833548	9833658	-	asmbl_51081,asmbl_51082	none	STRG.9181.3,blat.proc3825152.chain_1507	2	STRG.9181.1,STRG.9181.2,blat.proc3825152.chain_1508,blat.proc3825152.chain_1509	4
scaffold_3	alt_donor	6659747	6659748	+	asmbl_40103,asmbl_40108,asmbl_40110,asmbl_40116	none	STRG.3295.1,STRG.3295.2,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565	6	STRG.3295.4,blat.proc3825164.chain_3560,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569	4
scaffold_500	spliced_intron	746	1074	+	asmbl_46488,asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492	none	STRG.30357.1,STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6	5	blat.proc3825178.chain_3434,blat.proc3825178.chain_3437	2
scaffold_24	alt_donor	6855375	6855376	-	asmbl_32991	none	STRG.26740.1,blat.proc3825162.chain_112	2	STRG.26740.2,blat.proc3825162.chain_113	2
scaffold_10	retained_intron	16475883	16476026	-	asmbl_5005,asmbl_5008	none	STRG.13119.2,Trinity_GG_7353_c0_g1_i2,blat.proc3825154.chain_1717	3	STRG.13119.3	1
scaffold_15	alternate_exon	11161539	11165646	+	asmbl_15484	none	STRG.18593.1	1	STRG.18593.2	1
scaffold_7	skipped_exon	7244469	7246065	+	asmbl_49911	none	STRG.8986.2,blat.proc3825168.chain_1488	2	STRG.8986.1,blat.proc3825168.chain_1487	2
scaffold_27	spliced_intron	5049880	5050708	-	asmbl_36982	none	STRG.28938.4	1	STRG.28938.1,STRG.28938.5,Trinity_GG_16227_c0_g1_i2,blat.proc3825162.chain_2175	4
scaffold_19	alternate_exon	2195462	2195493	-	asmbl_22051	none	STRG.21933.2	1	STRG.21933.1,blat.proc3825158.chain_2773	2
scaffold_25	alternate_exon	637688	638055	-	asmbl_33993	none	STRG.27114.1,blat.proc3825162.chain_463	2	STRG.27114.2,blat.proc3825162.chain_464	2
scaffold_13	alt_donor	7653882	7653883	+	asmbl_11062,asmbl_11064	none	STRG.16054.1,blat.proc3825172.chain_821,blat.proc3825172.chain_824	3	STRG.16054.2	1
scaffold_19	starts_in_intron	5458996	5458996	-	asmbl_22165	none	blat.proc3825158.chain_2974	1	STRG.22108.1,blat.proc3825158.chain_2975	2
scaffold_12	retained_exon	4610037	4610122	-	asmbl_8412,asmbl_8413,asmbl_8415	none	STRG.14639.1,STRG.14639.2,blat.proc3825154.chain_3136,blat.proc3825154.chain_3137,blat.proc3825154.chain_3138	5	STRG.14639.3,blat.proc3825154.chain_3142	2
scaffold_11	starts_in_intron	13694385	13694385	+	asmbl_6075	none	blat.proc3825170.chain_2775	1	STRG.14232.1,blat.proc3825170.chain_2774	2
scaffold_24	alt_acceptor	879830	879831	+	asmbl_32054	none	STRG.26371.3	1	STRG.26371.2	1
scaffold_10	retained_exon	6052478	6052558	+	asmbl_3221,asmbl_3227	none	STRG.12435.1,blat.proc3825170.chain_1067,blat.proc3825170.chain_1069	3	STRG.12435.2,blat.proc3825170.chain_1071	2
scaffold_13	retained_exon	7505395	7506114	-	asmbl_9889,asmbl_9890,asmbl_9893	none	blat.proc3825156.chain_900,blat.proc3825156.chain_906,blat.proc3825156.chain_909	3	STRG.16047.1,STRG.16047.3,blat.proc3825156.chain_899,blat.proc3825156.chain_903,blat.proc3825156.chain_904,blat.proc3825156.chain_905	6
scaffold_15	alt_donor	6064816	6064817	+	asmbl_15233	none	STRG.18270.1,blat.proc3825172.chain_2956,blat.proc3825172.chain_2957	3	STRG.18270.2	1
scaffold_8	spliced_intron	11279257	11280686	-	asmbl_52145,asmbl_52147	none	STRG.10347.3,blat.proc3825152.chain_2594,blat.proc3825152.chain_2596	3	STRG.10347.1,STRG.10347.2,blat.proc3825152.chain_2593	3
scaffold_5	alt_donor	8132808	8132809	+	asmbl_45532	none	blat.proc3825166.chain_2389	1	STRG.6188.1,blat.proc3825166.chain_2391	2
scaffold_9	retained_exon	9530592	9530675	-	asmbl_55189,asmbl_55190,asmbl_55191	none	STRG.11314.1,STRG.11314.2,blat.proc3825152.chain_3548,blat.proc3825152.chain_3549	4	blat.proc3825152.chain_3550	1
scaffold_300	alt_acceptor	1584	1585	+	asmbl_40903	none	STRG.30272.1,blat.proc3825178.chain_3365	2	STRG.30272.2	1
scaffold_15	retained_intron	9289598	9289814	+	asmbl_15383	none	blat.proc3825172.chain_3077	1	STRG.18460.1,STRG.18460.2,blat.proc3825172.chain_3076	3
scaffold_7	spliced_intron	12614534	12614733	+	asmbl_50278	none	STRG.9372.1,Trinity_GG_22488_c0_g1_i2,blat.proc3825168.chain_1849	3	STRG.9372.2,Trinity_GG_22488_c0_g1_i1,blat.proc3825168.chain_1850	3
scaffold_27	alt_donor	1609311	1609312	-	asmbl_36771	none	Trinity_GG_16047_c1_g1_i1,blat.proc3825162.chain_1918	2	STRG.28650.1	1
scaffold_13	alternate_exon	1520328	1520389	-	asmbl_9416	none	Trinity_GG_8698_c0_g1_i1,blat.proc3825156.chain_404	2	STRG.15516.4	1
scaffold_6	alt_donor	1752143	1752144	-	asmbl_48113,asmbl_48115,asmbl_48117,asmbl_48120,asmbl_48121,asmbl_48122	none	STRG.7232.1,STRG.7232.3,STRG.7232.4,STRG.7232.5,STRG.7232.7,blat.proc3825150.chain_3308,blat.proc3825150.chain_3309,blat.proc3825150.chain_3312,blat.proc3825150.chain_3315	9	STRG.7232.6,blat.proc3825150.chain_3311,blat.proc3825150.chain_3314	3
scaffold_4	retained_intron	3884999	3885621	-	asmbl_42459,asmbl_42460,asmbl_42461	none	STRG.4296.1,STRG.4296.2,STRG.4296.3,Trinity_GG_2399_c1_g1_i1,blat.proc3825150.chain_530,blat.proc3825150.chain_531,blat.proc3825150.chain_532	7	STRG.4296.4	1
scaffold_28	starts_in_intron	8577078	8577078	+	asmbl_37763	none	blat.proc3825178.chain_3099	1	STRG.29938.1,blat.proc3825178.chain_3101	2
scaffold_2	alt_donor	2300465	2300466	-	asmbl_22886	none	STRG.1674.4	1	STRG.1674.3	1
scaffold_5	spliced_intron	10384008	10384137	-	asmbl_44352	none	STRG.6339.2	1	STRG.6339.1	1
scaffold_7	retained_exon	11412935	11412971	+	asmbl_50173	none	STRG.9288.1,Trinity_GG_22465_c0_g1_i2,blat.proc3825168.chain_1792	3	STRG.9288.2	1
scaffold_2	spliced_intron	14193694	14193809	-	asmbl_23569,asmbl_23570	none	blat.proc3825148.chain_2413,blat.proc3825148.chain_2414	2	STRG.2416.1,STRG.2416.2,blat.proc3825148.chain_2415	3
scaffold_13	retained_intron	6396468	6396589	+	asmbl_10926,asmbl_10928	none	STRG.15929.1,Trinity_GG_26055_c0_g1_i4,blat.proc3825172.chain_654	3	STRG.15929.2,STRG.15929.4,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i2,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_653,blat.proc3825172.chain_655	8
scaffold_19	alt_acceptor	5637100	5637101	-	asmbl_22178,asmbl_22179	none	blat.proc3825158.chain_2946,blat.proc3825158.chain_2947	2	blat.proc3825158.chain_2948	1
scaffold_5	starts_in_intron	14568037	14568037	-	asmbl_44602	none	blat.proc3825150.chain_2782	1	STRG.6658.1,STRG.6658.2,blat.proc3825150.chain_2784,blat.proc3825150.chain_2785	4
scaffold_17	skipped_exon	12368475	12371115	-	asmbl_18327	none	STRG.20776.2	1	STRG.20776.1,STRG.20776.3,blat.proc3825158.chain_1711	3
scaffold_6	retained_intron	16387153	16387269	+	asmbl_47696	none	Trinity_GG_21904_c0_g1_i2,blat.proc3825168.chain_812	2	STRG.8369.1,Trinity_GG_21904_c0_g1_i1,blat.proc3825168.chain_813	3
scaffold_8	alternate_exon	16507020	16512893	-	asmbl_52415	none	blat.proc3825152.chain_2932	1	Trinity_GG_5934_c0_g1_i12,blat.proc3825152.chain_2935	2
scaffold_10	spliced_intron	6869034	6869156	-	asmbl_4506,asmbl_4507,asmbl_4508,asmbl_4510,asmbl_4511,asmbl_4512	none	STRG.12511.1,Trinity_GG_7015_c0_g1_i3,blat.proc3825154.chain_1139,blat.proc3825154.chain_1143,blat.proc3825154.chain_1144,blat.proc3825154.chain_1145,blat.proc3825154.chain_1146,blat.proc3825154.chain_1147	8	blat.proc3825154.chain_1142	1
scaffold_25	alt_donor	2089234	2089235	-	asmbl_34061	none	blat.proc3825162.chain_615	1	STRG.27219.2	1
scaffold_12	ends_in_intron	15262957	15262957	-	asmbl_9063,asmbl_9064	none	STRG.15338.3,STRG.15338.4,Trinity_GG_8603_c2_g1_i1,blat.proc3825156.chain_183	4	STRG.15338.1,STRG.15338.2,Trinity_GG_8603_c0_g1_i1,blat.proc3825156.chain_180	4
scaffold_18	alternate_exon	1392173	1392292	-	asmbl_19622	none	STRG.21025.4	1	STRG.21025.1,STRG.21025.2,STRG.21025.3,blat.proc3825158.chain_2005,blat.proc3825158.chain_2006	5
scaffold_23	alt_donor	6988870	6988871	-	asmbl_30999	none	blat.proc3825160.chain_3168	1	STRG.26022.1,STRG.26022.2,blat.proc3825160.chain_3166,blat.proc3825160.chain_3167	4
scaffold_14	alt_acceptor	11247860	11247861	-	asmbl_13462,asmbl_13463	none	STRG.17460.3,STRG.17460.4	2	STRG.17460.1,blat.proc3825156.chain_2266,blat.proc3825156.chain_2267	3
scaffold_4	spliced_intron	753564	753737	-	asmbl_42347	none	STRG.4147.2	1	STRG.4147.1,Trinity_GG_2308_c0_g1_i1,blat.proc3825150.chain_376	3
scaffold_5	skipped_exon	6289314	6290164	+	asmbl_45420	none	STRG.6040.2	1	STRG.6040.1,Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	3
scaffold_13	retained_intron	8353056	8353594	+	asmbl_11128	none	blat.proc3825172.chain_917	1	STRG.16130.1,STRG.16130.2,blat.proc3825172.chain_915	3
scaffold_4	ends_in_intron	5647943	5647943	-	asmbl_42622	none	Trinity_GG_2475_c1_g1_i2,blat.proc3825150.chain_674	2	STRG.4472.1,blat.proc3825150.chain_669,blat.proc3825150.chain_670,blat.proc3825150.chain_671,blat.proc3825150.chain_673	5
scaffold_8	retained_intron	12692846	12692968	+	asmbl_53327	none	blat.proc3825168.chain_3009	1	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008	5
scaffold_2	alt_acceptor	15266716	15266717	+	asmbl_25005	none	blat.proc3825164.chain_2609	1	STRG.2485.1,STRG.2485.2,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605	7
scaffold_27	alternate_exon	9094542	9097054	-	asmbl_37126	none	Trinity_GG_16303_c0_g1_i1,blat.proc3825162.chain_2297	2	STRG.29162.1,Trinity_GG_16303_c0_g1_i3,blat.proc3825162.chain_2295	3
scaffold_8	spliced_intron	6161100	6161201	-	asmbl_51861,asmbl_51862,asmbl_51866,asmbl_51868,asmbl_51869,asmbl_51870	none	STRG.10030.1,STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	8	blat.proc3825152.chain_2270,blat.proc3825152.chain_2273	2
scaffold_28	alt_acceptor	224104	224105	-	asmbl_37902	none	STRG.29247.3	1	STRG.29247.1,STRG.29247.2	2
scaffold_14	starts_in_intron	10495184	10495184	+	asmbl_12327	none	Trinity_GG_26851_c1_g1_i1,blat.proc3825172.chain_2100	2	STRG.17401.1,blat.proc3825172.chain_2098,blat.proc3825172.chain_2099	3
scaffold_16	alternate_exon	11952153	11952270	+	asmbl_16618	none	STRG.19723.1,Trinity_GG_28067_c0_g1_i3,blat.proc3825174.chain_557	3	STRG.19723.3,Trinity_GG_28067_c0_g1_i4,blat.proc3825174.chain_555	3
scaffold_20	starts_in_intron	1079736	1079736	-	asmbl_25529	none	Trinity_GG_12731_c0_g1_i1,blat.proc3825158.chain_3665	2	STRG.22815.1,STRG.22815.2,blat.proc3825158.chain_3664	3
scaffold_18	retained_intron	7631535	7631669	-	asmbl_19961,asmbl_19965	none	STRG.21463.1,blat.proc3825158.chain_2394,blat.proc3825158.chain_2397	3	STRG.21463.2,blat.proc3825158.chain_2391,blat.proc3825158.chain_2392,blat.proc3825158.chain_2393	4
scaffold_18	spliced_intron	6294324	6294450	+	asmbl_20668	none	STRG.21362.2,blat.proc3825174.chain_2348	2	STRG.21362.1,Trinity_GG_29090_c0_g1_i1,blat.proc3825174.chain_2347	3
scaffold_18	alt_donor	1327611	1327612	+	asmbl_20336,asmbl_20338,asmbl_20341	none	STRG.21023.1,STRG.21023.3,blat.proc3825174.chain_1861,blat.proc3825174.chain_1862	4	STRG.21023.2,blat.proc3825174.chain_1860	2
scaffold_18	ends_in_intron	8715342	8715342	+	asmbl_20856	none	Trinity_GG_29224_c0_g1_i1,blat.proc3825174.chain_2597	2	STRG.21534.1,Trinity_GG_29224_c0_g1_i2,blat.proc3825174.chain_2598	3
scaffold_13	alternate_exon	7014447	7014556	-	asmbl_9837	none	blat.proc3825156.chain_793	1	STRG.15991.1,blat.proc3825156.chain_794	2
scaffold_1	spliced_intron	11627447	11627548	-	asmbl_648,asmbl_649,asmbl_650	none	STRG.769.1,blat.proc3825148.chain_722,blat.proc3825148.chain_723	3	Trinity_GG_386_c0_g1_i1,Trinity_GG_386_c0_g1_i7,blat.proc3825148.chain_719,blat.proc3825148.chain_721	4
scaffold_1	skipped_exon	3497794	3498653	-	asmbl_148,asmbl_150,asmbl_154	none	STRG.221.2,blat.proc3825148.chain_215,blat.proc3825148.chain_218,blat.proc3825148.chain_221	4	STRG.221.1,STRG.221.4,blat.proc3825148.chain_213,blat.proc3825148.chain_214,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_219,blat.proc3825148.chain_220	8
scaffold_24	retained_exon	9592748	9592808	-	asmbl_33137	none	STRG.26947.1,blat.proc3825162.chain_297	2	STRG.26947.3	1
scaffold_25	spliced_intron	6302449	6302790	+	asmbl_33607,asmbl_33609,asmbl_33615,asmbl_33616,asmbl_33617	none	STRG.27515.1,STRG.27515.2,blat.proc3825178.chain_556,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	6	blat.proc3825178.chain_555,blat.proc3825178.chain_557	2
scaffold_20	ends_in_intron	4013648	4013648	-	asmbl_25723	none	blat.proc3825160.chain_114	1	blat.proc3825160.chain_115	1
scaffold_11	ends_in_intron	12071205	12071205	-	asmbl_7075	none	Trinity_GG_7851_c1_g1_i4,blat.proc3825154.chain_2578	2	STRG.14130.2,Trinity_GG_7851_c1_g1_i2,Trinity_GG_7851_c1_g1_i3,blat.proc3825154.chain_2576	4
scaffold_8	starts_in_intron	9946752	9946752	-	asmbl_52081	none	STRG.10246.2,blat.proc3825152.chain_2515	2	STRG.10246.1,STRG.10246.3,Trinity_GG_5714_c0_g1_i1,blat.proc3825152.chain_2514,blat.proc3825152.chain_2516	5
scaffold_21	retained_intron	1171743	1171837	-	asmbl_27384	none	blat.proc3825160.chain_935	1	STRG.23798.1,STRG.23798.2,blat.proc3825160.chain_936	3
scaffold_3	starts_in_intron	17836590	17836590	+	asmbl_40702	none	blat.proc3825166.chain_501	1	STRG.3996.1,STRG.3996.2,blat.proc3825166.chain_502,blat.proc3825166.chain_503,blat.proc3825166.chain_505	5
scaffold_643	retained_intron	1289	1370	-	asmbl_49489,asmbl_49491	none	STRG.30415.2,blat.proc3825162.chain_3524	2	STRG.30415.1,STRG.30415.3	2
scaffold_2	alternate_exon	9141173	9141261	-	asmbl_23353,asmbl_23354	none	STRG.2159.2,blat.proc3825148.chain_2181	2	STRG.2159.1,blat.proc3825148.chain_2180	2
scaffold_5	spliced_intron	13067434	13067568	+	asmbl_45846	none	STRG.6536.1,blat.proc3825166.chain_2728	2	Trinity_GG_20876_c0_g1_i1,blat.proc3825166.chain_2729	2
scaffold_19	spliced_intron	12246351	12246698	-	asmbl_22472	none	blat.proc3825158.chain_3312	1	STRG.22552.1,blat.proc3825158.chain_3307,blat.proc3825158.chain_3310,blat.proc3825158.chain_3313	4
scaffold_18	spliced_intron	824174	824499	+	asmbl_20329	none	blat.proc3825174.chain_1871	1	STRG.21008.2,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	3
scaffold_3	spliced_intron	17364750	17365193	-	asmbl_39547,asmbl_39548,asmbl_39551,asmbl_39554,asmbl_39555	none	STRG.3971.1,STRG.3971.4,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_181,blat.proc3825150.chain_182	6	blat.proc3825150.chain_175,blat.proc3825150.chain_183	2
scaffold_8	ends_in_intron	18458309	18458309	-	asmbl_52547	none	blat.proc3825152.chain_3026	1	STRG.10744.1,STRG.10744.2,blat.proc3825152.chain_3025	3
scaffold_14	skipped_exon	1590407	1591852	-	asmbl_12900	none	STRG.16799.3	1	STRG.16799.4	1
scaffold_5	spliced_intron	108645	109025	-	asmbl_43754,asmbl_43755	none	STRG.5574.1,STRG.5574.2	2	Trinity_GG_3150_c0_g1_i2	1
scaffold_5	spliced_intron	10196215	10196313	-	asmbl_44320,asmbl_44321,asmbl_44323,asmbl_44324,asmbl_44326,asmbl_44327	none	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2527,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531,blat.proc3825150.chain_2533	8	blat.proc3825150.chain_2528	1
scaffold_16	alternate_exon	11333898	11335046	+	asmbl_16577	none	STRG.19664.1,blat.proc3825174.chain_606	2	STRG.19664.3,STRG.19664.4,blat.proc3825152.chain_406,blat.proc3825174.chain_603,blat.proc3825174.chain_604,blat.proc3825174.chain_605	6
scaffold_23	ends_in_intron	2995537	2995537	-	asmbl_30774	none	STRG.25748.5	1	STRG.25748.1,STRG.25748.4,blat.proc3825160.chain_2955	3
scaffold_6	spliced_intron	3805997	3806086	+	asmbl_46865	none	Trinity_GG_21370_c0_g1_i12,blat.proc3825166.chain_3609	2	STRG.7383.1,STRG.7383.3,Trinity_GG_21370_c0_g1_i10,blat.proc3825166.chain_3604	4
scaffold_21	retained_intron	705967	706986	-	asmbl_27355	none	STRG.23759.2,Trinity_GG_13202_c0_g2_i1,blat.proc3825160.chain_799	3	Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793	2
scaffold_26	alt_acceptor	3790215	3790216	+	asmbl_34832	none	STRG.28067.3	1	STRG.28067.1,STRG.28067.2	2
scaffold_5	spliced_intron	2536271	2536536	+	asmbl_45174,asmbl_45175	none	STRG.5779.3,blat.proc3825166.chain_2002	2	STRG.5779.2,blat.proc3825166.chain_2004	2
scaffold_16	alt_acceptor	6095186	6095187	-	asmbl_17136,asmbl_17138,asmbl_17139,asmbl_17140	none	STRG.19342.1,blat.proc3825158.chain_499,blat.proc3825158.chain_500,blat.proc3825158.chain_501,blat.proc3825158.chain_502	5	STRG.19342.2,blat.proc3825158.chain_498	2
scaffold_23	alt_acceptor	2325248	2325249	+	asmbl_31393	none	STRG.25705.1,Trinity_GG_31501_c0_g1_i2	2	STRG.25705.2,Trinity_GG_31501_c0_g1_i1	2
scaffold_13	retained_exon	6885661	6885747	+	asmbl_10992,asmbl_10994	none	STRG.15980.1,STRG.15980.2,blat.proc3825172.chain_730,blat.proc3825172.chain_731	4	STRG.15980.3,blat.proc3825172.chain_732	2
scaffold_18	starts_in_intron	8437428	8437428	-	asmbl_20013	none	STRG.21523.3	1	STRG.21523.1,STRG.21523.2,Trinity_GG_12033_c0_g1_i2,blat.proc3825158.chain_2422,blat.proc3825158.chain_2423	5
scaffold_5	retained_exon	9083285	9083410	+	asmbl_45599,asmbl_45603,asmbl_45605,asmbl_45606,asmbl_45607	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2475,blat.proc3825166.chain_2476,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479	6	blat.proc3825166.chain_2474,blat.proc3825166.chain_2481	2
scaffold_6	spliced_intron	12116976	12117069	+	asmbl_47373	none	STRG.7985.3,Trinity_GG_21681_c0_g1_i2,blat.proc3825168.chain_429	3	STRG.7985.4,Trinity_GG_21681_c0_g1_i5,blat.proc3825168.chain_431	3
scaffold_23	alt_acceptor	10404996	10404997	+	asmbl_31859	none	STRG.26250.1,blat.proc3825176.chain_3244	2	STRG.26250.2	1
scaffold_16	spliced_intron	14510356	14510447	-	asmbl_17446,asmbl_17447,asmbl_17448,asmbl_17449	none	STRG.19830.1,Trinity_GG_11122_c0_g1_i3,blat.proc3825158.chain_872,blat.proc3825158.chain_874,blat.proc3825158.chain_875,blat.proc3825158.chain_877,blat.proc3825158.chain_878	7	Trinity_GG_11122_c0_g1_i1,blat.proc3825158.chain_876	2
scaffold_19	spliced_intron	12972587	12973050	-	asmbl_22575,asmbl_22578	none	STRG.22618.2,Trinity_GG_12569_c0_g1_i6,blat.proc3825158.chain_3364	3	STRG.22618.3,Trinity_GG_12569_c0_g1_i5,blat.proc3825158.chain_3361	3
scaffold_5	spliced_intron	17211657	17211735	-	asmbl_44795,asmbl_44796,asmbl_44799,asmbl_44800	none	STRG.6894.1,STRG.6894.2,blat.proc3825150.chain_3039,blat.proc3825150.chain_3040,blat.proc3825150.chain_3043	5	blat.proc3825150.chain_3041	1
scaffold_25	alt_donor	6438182	6438183	+	asmbl_33629	none	STRG.27528.1,blat.proc3825178.chain_616	2	STRG.27528.2,blat.proc3825178.chain_615	2
scaffold_6	starts_in_intron	11500466	11500466	+	asmbl_47339	none	blat.proc3825168.chain_338	1	STRG.7947.1,Trinity_GG_21639_c0_g3_i1,blat.proc3825168.chain_340	3
scaffold_2	retained_exon	13897141	13897181	-	asmbl_23539,asmbl_23541	none	STRG.2384.2,blat.proc3825148.chain_2389	2	STRG.2384.1,blat.proc3825148.chain_2392	2
scaffold_11	spliced_intron	14533655	14533915	+	asmbl_6089,asmbl_6090,asmbl_6092	none	STRG.14252.1,STRG.14252.2,STRG.14252.3,Trinity_GG_25124_c0_g1_i1,Trinity_GG_25124_c0_g1_i3,blat.proc3825170.chain_2707,blat.proc3825170.chain_2709,blat.proc3825170.chain_2710	8	Trinity_GG_25124_c0_g1_i4,blat.proc3825170.chain_2708	2
scaffold_2	alt_acceptor	7993796	7993797	-	asmbl_23300	none	STRG.2091.1	1	STRG.2091.2	1
scaffold_10	spliced_intron	16475883	16476026	-	asmbl_5009	none	STRG.13119.3	1	STRG.13119.2,Trinity_GG_7353_c0_g1_i2,blat.proc3825154.chain_1717	3
scaffold_25	alternate_exon	9698384	9698452	+	asmbl_33836	none	STRG.27783.2	1	STRG.27783.1,Trinity_GG_32608_c0_g1_i1,blat.proc3825178.chain_822	3
scaffold_16	alt_donor	1777027	1777028	+	asmbl_16093	none	Trinity_GG_27779_c0_g1_i3,blat.proc3825174.chain_3	2	STRG.19102.1,STRG.19102.2,STRG.19102.3,Trinity_GG_27779_c0_g1_i1,Trinity_GG_27779_c0_g1_i2,blat.proc3825174.chain_2,blat.proc3825174.chain_4	7
scaffold_1	alternate_exon	20729966	20732246	-	asmbl_1198	none	STRG.1417.2,blat.proc3825148.chain_1393	2	STRG.1417.3	1
scaffold_17	retained_exon	5096321	5096465	+	asmbl_18812	none	STRG.20239.2,blat.proc3825158.chain_1291	2	STRG.20239.1,blat.proc3825174.chain_1090	2
scaffold_15	alternate_exon	11969233	11969329	-	asmbl_14544	none	STRG.18637.2	1	STRG.18637.1	1
scaffold_6	alternate_exon	12554855	12554983	-	asmbl_48829	none	blat.proc3825152.chain_423	1	STRG.8017.3,blat.proc3825152.chain_421	2
scaffold_19	starts_in_intron	13849	13849	-	asmbl_21978	none	blat.proc3825158.chain_2667	1	STRG.21818.1,blat.proc3825158.chain_2668	2
scaffold_14	alt_donor	8399511	8399512	-	asmbl_13303,asmbl_13306	none	STRG.17279.1,blat.proc3825156.chain_2088	2	STRG.17279.2,STRG.17279.3,blat.proc3825156.chain_2084,blat.proc3825156.chain_2087	4
scaffold_6	alt_donor	13925515	13925516	-	asmbl_48962	none	STRG.8145.2,blat.proc3825152.chain_578	2	STRG.8145.1,blat.proc3825152.chain_577	2
scaffold_18	spliced_intron	7686295	7686459	+	asmbl_20777,asmbl_20778,asmbl_20780,asmbl_20782,asmbl_20783,asmbl_20784,asmbl_20785,asmbl_20786	none	STRG.21474.1,STRG.21474.2,STRG.21474.3,STRG.21474.4,Trinity_GG_29179_c0_g1_i11,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2510,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	11	STRG.21474.5,Trinity_GG_29179_c0_g1_i14,blat.proc3825174.chain_2511,blat.proc3825174.chain_2512,blat.proc3825174.chain_2516	5
scaffold_25	retained_intron	339732	339809	-	asmbl_33971	none	blat.proc3825162.chain_419	1	blat.proc3825162.chain_418	1
scaffold_22	retained_intron	497867	498066	+	asmbl_29860	none	STRG.24697.2	1	STRG.24697.3	1
scaffold_13	spliced_intron	2274573	2274820	-	asmbl_9444,asmbl_9447	none	STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_399	3	STRG.15548.3,STRG.15548.4,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395	5
scaffold_15	alt_acceptor	13659427	13659428	+	asmbl_15647	none	STRG.18795.1,blat.proc3825172.chain_3360	2	STRG.18795.2	1
scaffold_13	alternate_exon	8801991	8805239	-	asmbl_9983,asmbl_9984,asmbl_9985,asmbl_9986	none	blat.proc3825156.chain_1065,blat.proc3825156.chain_1067,blat.proc3825156.chain_1070,blat.proc3825156.chain_1072	4	blat.proc3825156.chain_1066	1
scaffold_11	alt_donor	11641334	11641335	+	asmbl_5983	none	blat.proc3825170.chain_2634	1	STRG.14090.2	1
scaffold_18	retained_intron	6757958	6758114	-	asmbl_19911	none	STRG.21381.2,Trinity_GG_11979_c0_g1_i1,blat.proc3825158.chain_2322	3	STRG.21381.1,blat.proc3825158.chain_2323	2
scaffold_20	spliced_intron	8002938	8003022	-	asmbl_25952	none	STRG.23349.2	1	STRG.23349.1,Trinity_GG_13017_c0_g1_i2,blat.proc3825160.chain_428	3
scaffold_20	alt_acceptor	11672198	11672199	-	asmbl_26171,asmbl_26173,asmbl_26175	none	STRG.23670.2,STRG.23670.3,blat.proc3825160.chain_747,blat.proc3825160.chain_750,blat.proc3825160.chain_751	5	STRG.23670.1,blat.proc3825160.chain_748,blat.proc3825160.chain_749	3
scaffold_2	alternate_exon	18990661	18990849	-	asmbl_23842	none	STRG.2782.2	1	STRG.2782.1	1
scaffold_13	starts_in_intron	4458970	4458970	+	asmbl_10799	none	blat.proc3825172.chain_510	1	STRG.15770.1,STRG.15770.2,STRG.15770.3,STRG.15770.4,blat.proc3825172.chain_509,blat.proc3825172.chain_511	6
scaffold_2	retained_intron	2324086	2324113	-	asmbl_22889	none	STRG.1681.1	1	STRG.1681.2	1
scaffold_6	retained_intron	13167852	13167934	-	asmbl_48883,asmbl_48889	none	STRG.8074.2,blat.proc3825152.chain_476,blat.proc3825152.chain_477	3	blat.proc3825152.chain_470,blat.proc3825152.chain_471	2
scaffold_11	spliced_intron	17374697	17374848	+	asmbl_6220,asmbl_6223,asmbl_6224,asmbl_6225	none	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2881,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	5	Trinity_GG_25216_c0_g1_i7,blat.proc3825170.chain_2879	2
scaffold_16	spliced_intron	7520401	7520519	+	asmbl_16341	none	STRG.19405.3,blat.proc3825174.chain_337	2	blat.proc3825174.chain_338	1
scaffold_1	alternate_exon	18486789	18488925	-	asmbl_1107	none	STRG.1298.2,blat.proc3825148.chain_1322	2	STRG.1298.5	1
scaffold_5	alternate_exon	15449834	15449885	-	asmbl_44673	none	STRG.6730.2	1	STRG.6730.1,blat.proc3825150.chain_2869	2
scaffold_21	starts_in_intron	5537307	5537307	-	asmbl_27672	none	blat.proc3825160.chain_1274	1	STRG.24086.1	1
scaffold_25	starts_in_intron	4578198	4578198	+	asmbl_33520	none	Trinity_GG_32430_c0_g1_i10,blat.proc3825178.chain_530	2	STRG.27395.1,STRG.27395.2,STRG.27395.3,Trinity_GG_32430_c0_g1_i4,Trinity_GG_32430_c0_g1_i5,Trinity_GG_32430_c0_g1_i9,blat.proc3825178.chain_528,blat.proc3825178.chain_531,blat.proc3825178.chain_533	9
scaffold_19	starts_in_intron	654957	654957	+	asmbl_21197	none	Trinity_GG_29405_c1_g1_i1	1	blat.proc3825174.chain_2908	1
scaffold_27	alternate_exon	5927468	5927477	-	asmbl_37045	none	blat.proc3825162.chain_2239	1	STRG.29001.2,blat.proc3825162.chain_2240	2
scaffold_2	starts_in_intron	10654961	10654961	+	asmbl_24713,asmbl_24714	none	STRG.2225.2,blat.proc3825164.chain_2399	2	STRG.2225.1,blat.proc3825164.chain_2400	2
scaffold_7	ends_in_intron	8772202	8772202	+	asmbl_50053	none	blat.proc3825168.chain_1646	1	STRG.9117.1,STRG.9117.2,STRG.9117.3,blat.proc3825168.chain_1644,blat.proc3825168.chain_1645	5
scaffold_2	alt_acceptor	7469630	7469631	-	asmbl_23260,asmbl_23261,asmbl_23265	none	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063	5	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2
scaffold_5	alternate_exon	4721759	4727070	+	asmbl_45291	none	STRG.5927.1,Trinity_GG_20557_c0_g1_i4,blat.proc3825166.chain_2154	3	STRG.5927.2	1
scaffold_20	ends_in_intron	3997100	3997100	-	asmbl_25717	none	Trinity_GG_12891_c0_g2_i3,blat.proc3825160.chain_183	2	STRG.23095.1,blat.proc3825160.chain_182	2
scaffold_22	skipped_exon	230435	231354	-	asmbl_29075,asmbl_29076,asmbl_29080	none	STRG.24683.1,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1904	4	STRG.24683.5,blat.proc3825160.chain_1905	2
scaffold_24	skipped_exon	7201058	7202218	+	asmbl_32377,asmbl_32379	none	STRG.26769.2,STRG.26769.3	2	STRG.26769.1	1
scaffold_20	starts_in_intron	9442162	9442162	-	asmbl_26031	none	blat.proc3825160.chain_563	1	STRG.23483.1,STRG.23483.2,Trinity_GG_13097_c0_g1_i4,blat.proc3825160.chain_561,blat.proc3825160.chain_562	5
scaffold_1	alt_acceptor	6283665	6283666	-	asmbl_337	none	blat.proc3825148.chain_412	1	STRG.423.2,blat.proc3825148.chain_410,blat.proc3825148.chain_411	3
scaffold_27	alt_donor	5654003	5654004	+	asmbl_36349	none	STRG.28973.3	1	STRG.28973.1,STRG.28973.2,blat.proc3825178.chain_2094,blat.proc3825178.chain_2095	4
scaffold_27	ends_in_intron	144848	144848	-	asmbl_36647	none	Trinity_GG_15968_c0_g1_i1,blat.proc3825162.chain_1770	2	STRG.28551.1,STRG.28551.2,Trinity_GG_15968_c0_g1_i2,blat.proc3825162.chain_1769	4
scaffold_21	ends_in_intron	10505761	10505761	-	asmbl_28055	none	Trinity_GG_13717_c0_g1_i1,blat.proc3825160.chain_1746	2	blat.proc3825160.chain_1747	1
scaffold_3	starts_in_intron	16996116	16996116	+	asmbl_40637	none	Trinity_GG_19516_c0_g1_i2,blat.proc3825166.chain_413	2	STRG.3943.1,STRG.3943.2,Trinity_GG_19516_c0_g1_i3,blat.proc3825166.chain_414	4
scaffold_9	ends_in_intron	17852467	17852467	+	asmbl_54657,asmbl_54658	none	STRG.11873.1,STRG.11873.2	2	STRG.11873.3	1
scaffold_2	starts_in_intron	8316548	8316548	+	asmbl_24637	none	STRG.2119.2,blat.proc3825164.chain_2339	2	STRG.2119.1,blat.proc3825164.chain_2340	2
scaffold_8	alternate_exon	17682599	17682810	-	asmbl_52483	none	STRG.10687.2,Trinity_GG_5890_c0_g1_i4,blat.proc3825152.chain_2840	3	STRG.10687.1,Trinity_GG_5890_c0_g1_i6,blat.proc3825152.chain_2839	3
scaffold_6	alternate_exon	3806087	3806711	+	asmbl_46865	none	Trinity_GG_21370_c0_g1_i12,blat.proc3825166.chain_3609	2	STRG.7383.2,STRG.7383.4,STRG.7383.5	3
scaffold_20	spliced_intron	3440981	3441081	-	asmbl_25693	none	STRG.23051.2	1	STRG.23051.1,Trinity_GG_12865_c0_g1_i1,blat.proc3825160.chain_135	3
scaffold_18	alt_donor	1512768	1512769	+	asmbl_20358,asmbl_20360	none	STRG.21044.1,STRG.21044.3,blat.proc3825174.chain_1986	3	STRG.21044.2	1
scaffold_16	retained_intron	5445512	5445763	-	asmbl_17104	none	STRG.19301.1,blat.proc3825158.chain_456	2	STRG.19301.2,STRG.19301.3,Trinity_GG_10851_c0_g1_i2,blat.proc3825158.chain_457	4
scaffold_4	ends_in_intron	3230279	3230279	-	asmbl_42420	none	Trinity_GG_2357_c1_g2_i1	1	STRG.4248.2	1
scaffold_11	spliced_intron	5868618	5868758	-	asmbl_6685	none	STRG.13653.2,blat.proc3825154.chain_2233	2	STRG.13653.3,blat.proc3825154.chain_2234,blat.proc3825154.chain_2236	3
scaffold_10	skipped_exon	1425641	1425931	+	asmbl_2931,asmbl_2935,asmbl_2937	none	STRG.12016.1,STRG.12016.4,STRG.12016.5,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_760,blat.proc3825170.chain_763	6	blat.proc3825170.chain_761	1
scaffold_6	ends_in_intron	10373886	10373886	-	asmbl_48692	none	blat.proc3825152.chain_263	1	STRG.7873.1,Trinity_GG_4461_c0_g1_i3,blat.proc3825152.chain_265	3
scaffold_7	skipped_exon	10299648	10301691	+	asmbl_50108	none	STRG.9210.1,blat.proc3825168.chain_1704	2	STRG.9210.2,blat.proc3825168.chain_1703	2
scaffold_11	ends_in_intron	17180731	17180731	+	asmbl_6199	none	STRG.14380.2,Trinity_GG_25246_c1_g2_i1,blat.proc3825170.chain_2930	3	STRG.14380.1,Trinity_GG_25246_c1_g2_i2,blat.proc3825170.chain_2931	3
scaffold_10	starts_in_intron	1993634	1993634	-	asmbl_4093	none	blat.proc3825154.chain_613	1	STRG.12054.1,blat.proc3825154.chain_612	2
scaffold_28	alt_acceptor	2406015	2406016	+	asmbl_37365	none	STRG.29414.3,blat.proc3825178.chain_2581	2	STRG.29414.1,STRG.29414.2,STRG.29414.4,blat.proc3825178.chain_2579,blat.proc3825178.chain_2580,blat.proc3825178.chain_2582	6
scaffold_15	alt_acceptor	8986850	8986851	+	asmbl_15375	none	blat.proc3825172.chain_3141	1	STRG.18445.1,STRG.18445.2,blat.proc3825172.chain_3138,blat.proc3825172.chain_3139	4
scaffold_1	alt_acceptor	14259748	14259749	-	asmbl_878	none	STRG.1019.1,blat.proc3825148.chain_1018	2	blat.proc3825148.chain_1019	1
scaffold_27	skipped_exon	1986699	1987064	+	asmbl_36058	none	STRG.28684.2	1	STRG.28684.1,Trinity_GG_33184_c1_g1_i2	2
scaffold_14	skipped_exon	12807539	12807951	-	asmbl_13607	none	STRG.17589.1,blat.proc3825156.chain_2415	2	STRG.17589.2	1
scaffold_2	alternate_exon	14019102	14019204	+	asmbl_24870,asmbl_24871	none	STRG.2398.2,blat.proc3825164.chain_2574	2	STRG.2398.1,Trinity_GG_18647_c0_g1_i1,Trinity_GG_18647_c0_g1_i3,blat.proc3825164.chain_2576,blat.proc3825164.chain_2577	5
scaffold_26	alternate_exon	1318707	1319139	-	asmbl_35398	none	STRG.27913.1	1	blat.proc3825162.chain_1237,blat.proc3825162.chain_1239	2
scaffold_6	alt_acceptor	12520946	12520947	-	asmbl_48816,asmbl_48819	none	STRG.8011.4,blat.proc3825152.chain_398	2	STRG.8011.1,STRG.8011.2,blat.proc3825152.chain_396,blat.proc3825152.chain_397	4
scaffold_8	retained_intron	12560537	12560677	+	asmbl_53319	none	STRG.10425.2	1	STRG.10425.1,Trinity_GG_23125_c0_g1_i1,blat.proc3825168.chain_3002	3
scaffold_10	retained_exon	1976446	1976636	-	asmbl_4087	none	STRG.12049.1,blat.proc3825154.chain_607	2	STRG.12049.2,blat.proc3825154.chain_606	2
scaffold_11	alt_donor	3024461	3024462	+	asmbl_5395,asmbl_5396	none	STRG.13434.1,STRG.13434.2,blat.proc3825170.chain_1879,blat.proc3825170.chain_1880	4	STRG.13434.3	1
scaffold_6	retained_exon	18917077	18917158	-	asmbl_49289	none	STRG.8561.1,blat.proc3825152.chain_1002,blat.proc3825152.chain_1003	3	STRG.8561.2,STRG.8561.3	2
scaffold_6	alt_acceptor	13229382	13229383	+	asmbl_47499,asmbl_47507	none	STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_577	3	STRG.8084.2,STRG.8084.3,STRG.8084.5,blat.proc3825168.chain_570	4
scaffold_14	alternate_exon	13210892	13210996	+	asmbl_12457	none	STRG.17621.1	1	STRG.17621.2,STRG.17621.3	2
scaffold_21	starts_in_intron	6588593	6588593	+	asmbl_28668	none	Trinity_GG_30715_c0_g1_i2,blat.proc3825176.chain_1402	2	STRG.24182.1,blat.proc3825176.chain_1401,blat.proc3825176.chain_1403	3
scaffold_25	spliced_intron	6311971	6313061	-	asmbl_34350	none	STRG.27516.1	1	Trinity_GG_15440_c0_g1_i1,blat.proc3825162.chain_907	2
scaffold_2	alt_donor	5183573	5183574	-	asmbl_23133	none	blat.proc3825148.chain_1967	1	blat.proc3825148.chain_1970	1
scaffold_21	alternate_exon	3152446	3156165	+	asmbl_28456,asmbl_28457,asmbl_28458	none	STRG.23959.1,blat.proc3825160.chain_1075,blat.proc3825176.chain_1132,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139	5	STRG.23959.6	1
scaffold_24	spliced_intron	6225905	6226490	-	asmbl_32940,asmbl_32941,asmbl_32945,asmbl_32946,asmbl_32948,asmbl_32949	none	STRG.26685.1,STRG.26685.2,STRG.26685.4,STRG.26685.5,STRG.26685.8,Trinity_GG_14882_c0_g1_i8,blat.proc3825160.chain_3734,blat.proc3825160.chain_3735,blat.proc3825160.chain_3737	9	STRG.26685.3,STRG.26685.6,STRG.26685.7,Trinity_GG_14882_c0_g1_i10,blat.proc3825160.chain_3732,blat.proc3825160.chain_3733,blat.proc3825160.chain_3736	7
scaffold_4	ends_in_intron	1973741	1973741	+	asmbl_41151	none	blat.proc3825166.chain_623	1	blat.proc3825166.chain_624	1
scaffold_23	retained_exon	7939183	7940157	-	asmbl_31065	none	STRG.26099.3,Trinity_GG_14574_c2_g1_i1,blat.proc3825160.chain_3215,blat.proc3825160.chain_3216,blat.proc3825160.chain_3217	5	STRG.26099.2	1
scaffold_4	retained_intron	19357562	19357800	-	asmbl_43438	none	blat.proc3825150.chain_1684	1	STRG.5523.1,STRG.5523.2,Trinity_GG_3086_c0_g1_i3,blat.proc3825150.chain_1679,blat.proc3825150.chain_1685,blat.proc3825150.chain_1687	6
scaffold_6	alternate_exon	12994820	12998579	-	asmbl_48865	none	blat.proc3825152.chain_488	1	STRG.8068.5,blat.proc3825152.chain_491,blat.proc3825152.chain_496	3
scaffold_12	alternate_exon	10180395	10181008	+	asmbl_7908	none	STRG.14990.2,blat.proc3825170.chain_3553	2	STRG.14990.1	1
scaffold_26	retained_exon	3672349	3672378	+	asmbl_34808,asmbl_34809,asmbl_34811	none	STRG.28048.1,blat.proc3825178.chain_1108,blat.proc3825178.chain_1110,blat.proc3825178.chain_1112	4	blat.proc3825178.chain_1106,blat.proc3825178.chain_1111	2
scaffold_22	spliced_intron	7972285	7972608	+	asmbl_30248	none	STRG.25154.3	1	STRG.25154.4,Trinity_GG_31241_c0_g1_i3,blat.proc3825176.chain_2284	3
scaffold_14	retained_exon	15584128	15584808	+	asmbl_12630	none	STRG.17811.2	1	STRG.17811.5	1
scaffold_16	retained_intron	7520401	7520519	+	asmbl_16342	none	blat.proc3825174.chain_338	1	STRG.19405.3,blat.proc3825174.chain_337	2
scaffold_20	alt_acceptor	12074836	12074837	-	asmbl_26219	none	STRG.23706.2	1	STRG.23706.1,blat.proc3825160.chain_685,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_688	5
scaffold_16	alt_acceptor	3569218	3569219	-	asmbl_16987,asmbl_16990	none	STRG.19175.2,STRG.19175.3,Trinity_GG_10767_c0_g1_i8,blat.proc3825158.chain_306	4	STRG.19175.1,Trinity_GG_10767_c0_g1_i5,blat.proc3825158.chain_305	3
scaffold_13	retained_intron	352039	352293	-	asmbl_9303	none	Trinity_GG_8667_c0_g1_i7,blat.proc3825156.chain_311	2	STRG.15440.1,Trinity_GG_8667_c0_g1_i11,Trinity_GG_8667_c0_g1_i6,Trinity_GG_8667_c0_g1_i9,blat.proc3825156.chain_305,blat.proc3825156.chain_307,blat.proc3825156.chain_309,blat.proc3825156.chain_310	8
scaffold_23	starts_in_intron	4169068	4169068	+	asmbl_31491	none	blat.proc3825176.chain_2768	1	STRG.25833.1,STRG.25833.2,Trinity_GG_31563_c0_g1_i4,blat.proc3825176.chain_2766,blat.proc3825176.chain_2769	5
scaffold_21	alternate_exon	255962	257725	-	asmbl_27289	none	STRG.23725.4	1	blat.proc3825160.chain_807	1
scaffold_27	ends_in_intron	6602806	6602806	-	asmbl_37066	none	Trinity_GG_16282_c0_g1_i3	1	STRG.29038.1,blat.proc3825162.chain_2260	2
scaffold_8	alt_acceptor	6018616	6018617	-	asmbl_51856	none	STRG.10012.1,Trinity_GG_5580_c0_g1_i2,blat.proc3825152.chain_2269	3	STRG.10012.2,Trinity_GG_5580_c0_g1_i1,blat.proc3825152.chain_2268	3
scaffold_5	spliced_intron	11993128	11993287	-	asmbl_44427,asmbl_44429,asmbl_44430,asmbl_44431,asmbl_44432,asmbl_44433	none	STRG.6453.2,STRG.6453.4,STRG.6453.5,STRG.6453.8,STRG.6453.9,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	7	blat.proc3825150.chain_2615	1
scaffold_12	alt_acceptor	4104753	4104754	+	asmbl_7582	none	STRG.14597.1	1	STRG.14597.3	1
scaffold_6	retained_exon	8172709	8172802	-	asmbl_48542	none	blat.proc3825152.chain_93	1	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_91,blat.proc3825152.chain_92	5
scaffold_28	starts_in_intron	2133319	2133319	+	asmbl_37331	none	blat.proc3825178.chain_2537	1	STRG.29377.1,blat.proc3825178.chain_2536	2
scaffold_2	retained_intron	14556531	14556641	+	asmbl_24961	none	blat.proc3825164.chain_2665	1	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2661,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663	11
scaffold_21	alt_donor	406299	406300	-	asmbl_27311,asmbl_27312	none	Trinity_GG_13230_c0_g1_i7,Trinity_GG_13230_c0_g1_i8,blat.proc3825160.chain_862,blat.proc3825160.chain_863	4	Trinity_GG_13230_c0_g1_i4,blat.proc3825160.chain_865	2
scaffold_5	spliced_intron	4866436	4866834	+	asmbl_45307	none	STRG.5946.1,blat.proc3825166.chain_2170	2	STRG.5946.3,Trinity_GG_20566_c0_g1_i1,blat.proc3825166.chain_2171,blat.proc3825166.chain_2173	4
scaffold_12	retained_intron	12287762	12287963	-	asmbl_8856,asmbl_8857	none	STRG.15130.3,Trinity_GG_8430_c0_g1_i1,blat.proc3825154.chain_3606,blat.proc3825154.chain_3607	4	STRG.15130.1,STRG.15130.2,STRG.15130.4,STRG.15130.5	4
scaffold_13	alternate_exon	15510812	15511198	+	asmbl_11514	none	STRG.16593.3	1	STRG.16593.1,Trinity_GG_26459_c0_g1_i1,blat.proc3825172.chain_1398,blat.proc3825172.chain_1400	4
scaffold_3	skipped_exon	6821999	6822283	+	asmbl_40135	none	STRG.3308.2	1	STRG.3308.1	1
scaffold_17	alt_donor	10193981	10193982	-	asmbl_18231	none	STRG.20638.1,blat.proc3825158.chain_1670	2	STRG.20638.2	1
scaffold_1	retained_intron	10950971	10951077	+	asmbl_2037,asmbl_2040	none	STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_862	3	STRG.715.1,STRG.715.2,STRG.715.3,blat.proc3825164.chain_858,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_863,blat.proc3825164.chain_864	8
scaffold_13	alternate_exon	2653424	2653584	-	asmbl_9468	none	Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_380	2	STRG.15580.1,blat.proc3825156.chain_376,blat.proc3825156.chain_377,blat.proc3825156.chain_378	4
scaffold_12	spliced_intron	10384453	10384526	+	asmbl_7921	none	STRG.15014.1,blat.proc3825170.chain_3574	2	blat.proc3825170.chain_3575	1
scaffold_18	retained_intron	6294324	6294450	+	asmbl_20667	none	STRG.21362.1,Trinity_GG_29090_c0_g1_i1,blat.proc3825174.chain_2347	3	STRG.21362.2,blat.proc3825174.chain_2348	2
scaffold_7	alt_acceptor	13213475	13213476	+	asmbl_50323,asmbl_50324	none	STRG.9429.3,blat.proc3825168.chain_1942	2	STRG.9429.4	1
scaffold_1	spliced_intron	14355835	14355988	-	asmbl_899	none	blat.proc3825148.chain_1036	1	blat.proc3825148.chain_1038	1
scaffold_11	starts_in_intron	13520367	13520367	-	asmbl_7135	none	Trinity_GG_7942_c0_g1_i1,blat.proc3825154.chain_2741	2	STRG.14209.1,blat.proc3825154.chain_2742	2
scaffold_2	retained_intron	14203673	14203696	-	asmbl_23576,asmbl_23578	none	STRG.2414.3,blat.proc3825148.chain_2408	2	blat.proc3825148.chain_2404	1
scaffold_17	starts_in_intron	3192673	3192673	+	asmbl_18707	none	Trinity_GG_28314_c0_g1_i4,blat.proc3825174.chain_965	2	STRG.20100.1	1
scaffold_24	alt_donor	4294843	4294844	-	asmbl_32869	none	STRG.26592.1,blat.proc3825160.chain_3717	2	STRG.26592.2,blat.proc3825160.chain_3716	2
scaffold_2	alt_donor	15455112	15455113	+	asmbl_25042,asmbl_25045	none	blat.proc3825164.chain_2805,blat.proc3825164.chain_2810	2	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809,blat.proc3825164.chain_2811,blat.proc3825164.chain_2812	9
scaffold_11	spliced_intron	13092586	13094447	+	asmbl_6034,asmbl_6035	none	STRG.14188.2,blat.proc3825170.chain_2746,blat.proc3825170.chain_2747	3	Trinity_GG_25144_c0_g1_i1,Trinity_GG_25144_c1_g1_i2,blat.proc3825170.chain_2745,blat.proc3825170.chain_2749,blat.proc3825170.chain_2753	5
scaffold_28	spliced_intron	107460	108782	-	asmbl_37891	none	STRG.29246.1,blat.proc3825162.chain_2426	2	blat.proc3825162.chain_2421,blat.proc3825162.chain_2423,blat.proc3825162.chain_2424	3
scaffold_6	ends_in_intron	8451694	8451694	+	asmbl_47125	none	blat.proc3825168.chain_145	1	STRG.7715.1,blat.proc3825168.chain_144	2
scaffold_16	alt_acceptor	7546996	7546997	+	asmbl_16349	none	STRG.19407.1,blat.proc3825174.chain_292	2	STRG.19407.2	1
scaffold_1	alternate_exon	18279767	18279861	-	asmbl_1096	none	STRG.1279.3,blat.proc3825148.chain_1283	2	blat.proc3825148.chain_1284	1
scaffold_7	retained_intron	13952403	13952512	+	asmbl_50386	none	Trinity_GG_22583_c0_g1_i5,blat.proc3825168.chain_2008	2	STRG.9492.1,Trinity_GG_22583_c0_g1_i2,blat.proc3825168.chain_2010	3
scaffold_26	alternate_exon	4571924	4572028	-	asmbl_35564	none	STRG.28173.2,blat.proc3825162.chain_1420	2	STRG.28173.1,blat.proc3825162.chain_1421	2
scaffold_6	alternate_exon	3793845	3794011	+	asmbl_46859	none	STRG.7378.2,blat.proc3825166.chain_3632	2	STRG.7378.1,blat.proc3825166.chain_3633	2
scaffold_12	starts_in_intron	11359739	11359739	-	asmbl_8805	none	blat.proc3825154.chain_3562	1	STRG.15078.1,blat.proc3825154.chain_3563	2
scaffold_13	starts_in_intron	517907	517907	+	asmbl_10493	none	blat.proc3825172.chain_186	1	STRG.15449.2,STRG.15449.3,STRG.15449.4,STRG.15449.5,Trinity_GG_25810_c0_g1_i15,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_179,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_184,blat.proc3825172.chain_185	13
scaffold_4	skipped_exon	12641070	12642425	-	asmbl_42942	none	STRG.4905.2,Trinity_GG_2731_c0_g1_i2,blat.proc3825150.chain_1090	3	STRG.4905.1,Trinity_GG_2731_c0_g1_i1,blat.proc3825150.chain_1089	3
scaffold_27	ends_in_intron	4509890	4509890	+	asmbl_36295	none	STRG.28904.2,Trinity_GG_33313_c0_g1_i4,blat.proc3825178.chain_2103	3	STRG.28904.1,blat.proc3825178.chain_2104,blat.proc3825178.chain_2105	3
scaffold_9	retained_intron	7796656	7797444	+	asmbl_54135,asmbl_54138,asmbl_54139,asmbl_54140	none	blat.proc3825170.chain_70,blat.proc3825170.chain_71,blat.proc3825170.chain_72,blat.proc3825170.chain_74	4	STRG.11230.1,blat.proc3825170.chain_75,blat.proc3825170.chain_76,blat.proc3825170.chain_77	4
scaffold_10	alt_donor	2742255	2742256	+	asmbl_3006	none	STRG.12092.1,blat.proc3825170.chain_840	2	STRG.12092.2,blat.proc3825170.chain_841	2
scaffold_23	spliced_intron	7701820	7701972	+	asmbl_31723	none	STRG.26086.2	1	STRG.26086.1,STRG.26086.3	2
scaffold_22	alternate_exon	10668070	10669801	-	asmbl_29614	none	STRG.25409.1	1	STRG.25409.2,blat.proc3825160.chain_2566	2
scaffold_13	ends_in_intron	15362667	15362667	+	asmbl_11492	none	Trinity_GG_26428_c0_g2_i1,blat.proc3825172.chain_1340	2	STRG.16579.1,STRG.16579.2,Trinity_GG_26428_c0_g1_i1,Trinity_GG_26428_c0_g1_i2,Trinity_GG_26428_c0_g1_i3	5
scaffold_14	skipped_exon	869132	871148	+	asmbl_11776	none	STRG.16759.3	1	STRG.16759.1,STRG.16759.2,blat.proc3825172.chain_1525	3
scaffold_28	retained_intron	5358871	5358960	-	asmbl_38287	none	STRG.29684.2	1	STRG.29684.1,blat.proc3825162.chain_2873	2
scaffold_15	retained_intron	8628465	8629828	-	asmbl_14344	none	Trinity_GG_10362_c0_g1_i3,Trinity_GG_10362_c0_g1_i4,blat.proc3825156.chain_3297,blat.proc3825156.chain_3299	4	STRG.18411.1,blat.proc3825156.chain_3296,blat.proc3825156.chain_3298	3
scaffold_3	retained_exon	6174518	6176149	-	asmbl_38901	none	STRG.3284.1,blat.proc3825148.chain_3074	2	STRG.3284.2,STRG.3284.3,blat.proc3825148.chain_3075,blat.proc3825148.chain_3076	4
scaffold_12	alt_acceptor	3100139	3100140	+	asmbl_7541	none	STRG.14550.1,blat.proc3825170.chain_3074	2	STRG.14550.2	1
scaffold_1	ends_in_intron	5738285	5738285	+	asmbl_1772	none	blat.proc3825164.chain_531	1	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_530	4
scaffold_16	alt_acceptor	5387828	5387829	-	asmbl_17093	none	STRG.19287.3	1	STRG.19287.1,blat.proc3825158.chain_441,blat.proc3825158.chain_442	3
scaffold_19	ends_in_intron	164644	164644	+	asmbl_21181	none	Trinity_GG_29406_c0_g1_i3,blat.proc3825174.chain_2911	2	STRG.21830.1,STRG.21830.2,Trinity_GG_29406_c0_g1_i2,blat.proc3825174.chain_2910,blat.proc3825174.chain_2912	5
scaffold_12	spliced_intron	12005072	12005349	-	asmbl_8845,asmbl_8846	none	STRG.15112.1,STRG.15112.2,Trinity_GG_8447_c0_g1_i1,blat.proc3825154.chain_3632,blat.proc3825154.chain_3634	5	STRG.15112.3,blat.proc3825154.chain_3633	2
scaffold_2	alt_acceptor	894301	894302	+	asmbl_24136,asmbl_24138,asmbl_24143,asmbl_24145	none	STRG.1566.1,STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725,blat.proc3825164.chain_1726,blat.proc3825164.chain_1727,blat.proc3825164.chain_1729	7	STRG.1566.2,STRG.1566.3,STRG.1566.4,Trinity_GG_18212_c0_g2_i7,blat.proc3825164.chain_1728,blat.proc3825164.chain_1730,blat.proc3825164.chain_1731	7
scaffold_3	retained_exon	10628153	10629296	+	asmbl_40280,asmbl_40281,asmbl_40286,asmbl_40290	none	STRG.3513.2,STRG.3513.5,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688	5	STRG.3513.3,blat.proc3825164.chain_3682	2
scaffold_16	alt_donor	9204501	9204502	-	asmbl_17269,asmbl_17270	none	STRG.19522.1,blat.proc3825158.chain_644	2	blat.proc3825158.chain_645	1
scaffold_5	alternate_exon	15044294	15045805	-	asmbl_44633,asmbl_44636	none	STRG.6698.6,Trinity_GG_3732_c0_g1_i2,blat.proc3825150.chain_2825	3	STRG.6698.3	1
scaffold_21	retained_intron	1654469	1654866	+	asmbl_28347,asmbl_28350	none	Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1059	3	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058	4
scaffold_13	retained_intron	8715359	8715468	-	asmbl_9968	none	STRG.16141.1,blat.proc3825156.chain_1052	2	STRG.16141.2,blat.proc3825156.chain_1053	2
scaffold_21	starts_in_intron	6666415	6666415	-	asmbl_27741	none	STRG.24195.1	1	STRG.24195.2	1
scaffold_15	retained_intron	15416433	15416546	-	asmbl_14777,asmbl_14778	none	blat.proc3825158.chain_53,blat.proc3825158.chain_54	2	blat.proc3825158.chain_52	1
scaffold_26	retained_exon	6351172	6351208	-	asmbl_35680,asmbl_35685	none	STRG.28335.1,STRG.28335.2,blat.proc3825162.chain_1570	3	STRG.28335.5	1
scaffold_3	retained_exon	13648702	13648766	-	asmbl_39275	none	STRG.3709.2,Trinity_GG_2039_c0_g1_i1,blat.proc3825148.chain_3600	3	STRG.3709.3,Trinity_GG_2039_c0_g1_i3,blat.proc3825148.chain_3599	3
scaffold_19	alt_acceptor	8753751	8753752	+	asmbl_21547	none	STRG.22336.1,blat.proc3825174.chain_3312	2	blat.proc3825174.chain_3313	1
scaffold_8	starts_in_intron	8180347	8180347	+	asmbl_53008	none	blat.proc3825168.chain_2699	1	STRG.10103.1,STRG.10103.2,STRG.10103.3,STRG.10103.4,blat.proc3825168.chain_2696	5
scaffold_2	retained_intron	15270016	15270269	+	asmbl_25019	none	blat.proc3825164.chain_2618	1	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	6
scaffold_17	alt_acceptor	4005319	4005320	+	asmbl_18763	none	blat.proc3825174.chain_1055	1	STRG.20163.1	1
scaffold_14	skipped_exon	14386356	14387535	+	asmbl_12545	none	STRG.17700.2	1	STRG.17700.1	1
scaffold_5	ends_in_intron	10308054	10308054	+	asmbl_45672	none	blat.proc3825166.chain_2547	1	blat.proc3825166.chain_2543	1
scaffold_16	alternate_exon	8715466	8715506	-	asmbl_17253,asmbl_17254	none	STRG.19504.2,STRG.19504.3,blat.proc3825158.chain_625,blat.proc3825158.chain_627	4	STRG.19504.1,blat.proc3825158.chain_624,blat.proc3825158.chain_626	3
scaffold_5	spliced_intron	13313903	13313990	-	asmbl_44537,asmbl_44539,asmbl_44540,asmbl_44542	none	STRG.6579.1,blat.proc3825150.chain_2763,blat.proc3825150.chain_2764,blat.proc3825150.chain_2766	4	blat.proc3825150.chain_2765	1
scaffold_16	alternate_exon	14550946	14550975	+	asmbl_16690	none	STRG.19851.1	1	STRG.19851.2,Trinity_GG_28180_c0_g1_i3,blat.proc3825174.chain_730	3
scaffold_6	alternate_exon	12999206	12999742	-	asmbl_48864	none	blat.proc3825152.chain_496	1	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,blat.proc3825152.chain_488,blat.proc3825152.chain_492,blat.proc3825152.chain_495	7
scaffold_10	starts_in_intron	6072490	6072490	-	asmbl_4424	none	blat.proc3825154.chain_1031	1	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1028,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033,blat.proc3825154.chain_1034	11
scaffold_16	alternate_exon	12643335	12644767	-	asmbl_17398	none	STRG.19758.1,blat.proc3825158.chain_798	2	STRG.19758.2,blat.proc3825158.chain_800	2
scaffold_13	retained_intron	1238200	1238338	+	asmbl_10553	none	Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_312	2	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,STRG.15494.7,Trinity_GG_25867_c0_g1_i3,blat.proc3825172.chain_307,blat.proc3825172.chain_311	9
scaffold_11	spliced_intron	9829790	9830568	+	asmbl_5908,asmbl_5913	none	STRG.14008.4,blat.proc3825170.chain_2565	2	STRG.14008.1,STRG.14008.3,Trinity_GG_25038_c0_g1_i6,blat.proc3825170.chain_2560	4
scaffold_13	alt_acceptor	8026566	8026567	-	asmbl_9933,asmbl_9934	none	STRG.16086.1,blat.proc3825156.chain_880,blat.proc3825156.chain_881	3	STRG.16086.2	1
scaffold_2	retained_intron	899038	899115	+	asmbl_24148,asmbl_24151	none	STRG.1569.2,Trinity_GG_18211_c0_g1_i4,Trinity_GG_18211_c0_g1_i5,blat.proc3825164.chain_1718	4	STRG.1569.1,STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721,blat.proc3825164.chain_1722	6
scaffold_5	retained_exon	824518	824592	+	asmbl_45103	none	STRG.5638.2	1	STRG.5638.1	1
scaffold_9	retained_intron	11777366	11777484	+	asmbl_54378	none	Trinity_GG_23725_c0_g1_i1,blat.proc3825170.chain_312	2	STRG.11489.1	1
scaffold_23	alternate_exon	7278481	7279164	-	asmbl_31021	none	STRG.26052.4,Trinity_GG_14537_c0_g1_i7	2	STRG.26052.1,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	3
scaffold_28	ends_in_intron	3068675	3068675	+	asmbl_37431	none	blat.proc3825178.chain_2698	1	STRG.29516.1,STRG.29516.2,STRG.29516.3,blat.proc3825178.chain_2699,blat.proc3825178.chain_2700	5
scaffold_18	starts_in_intron	5022756	5022756	-	asmbl_19827	none	blat.proc3825158.chain_2220	1	STRG.21281.1,blat.proc3825158.chain_2221	2
scaffold_25	starts_in_intron	5157719	5157719	-	asmbl_34248	none	blat.proc3825162.chain_810	1	STRG.27443.1,STRG.27443.2,STRG.27443.3,blat.proc3825162.chain_805,blat.proc3825162.chain_806,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809	8
scaffold_10	alternate_exon	211880	211935	-	asmbl_3922,asmbl_3925	none	STRG.11913.1,Trinity_GG_6621_c0_g1_i1,blat.proc3825154.chain_433	3	STRG.11913.2,blat.proc3825154.chain_430,blat.proc3825154.chain_431	3
scaffold_5	spliced_intron	2673418	2674638	-	asmbl_43894,asmbl_43896,asmbl_43898	none	STRG.5796.2,blat.proc3825150.chain_1944,blat.proc3825150.chain_1949	3	STRG.5796.3,STRG.5796.5,STRG.5796.6,blat.proc3825150.chain_1946,blat.proc3825150.chain_1947	5
scaffold_20	alt_acceptor	1952477	1952478	-	asmbl_25624	none	STRG.22935.1	1	blat.proc3825160.chain_32	1
scaffold_19	retained_intron	3668736	3668829	-	asmbl_22120,asmbl_22122	none	Trinity_GG_12309_c0_g1_i4,blat.proc3825158.chain_2895,blat.proc3825158.chain_2898	3	STRG.22046.1,STRG.22046.2,Trinity_GG_12309_c0_g1_i1,Trinity_GG_12309_c0_g1_i3,Trinity_GG_12309_c0_g1_i5,Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2893,blat.proc3825158.chain_2894,blat.proc3825158.chain_2897,blat.proc3825158.chain_2899	10
scaffold_6	spliced_intron	7935430	7936138	-	asmbl_48510,asmbl_48511,asmbl_48512,asmbl_48513,asmbl_48515,asmbl_48516	none	STRG.7676.1,STRG.7676.3,STRG.7676.4,blat.proc3825152.chain_69,blat.proc3825152.chain_70,blat.proc3825152.chain_71,blat.proc3825152.chain_73	7	STRG.7676.2,blat.proc3825152.chain_72	2
scaffold_7	starts_in_intron	125439	125439	-	asmbl_50667	none	STRG.8595.1	1	STRG.8595.2,STRG.8595.5,STRG.8595.7	3
scaffold_9	starts_in_intron	4815225	4815225	-	asmbl_54974	none	blat.proc3825152.chain_3299	1	STRG.11051.1,blat.proc3825152.chain_3297	2
scaffold_13	alternate_exon	15362869	15363547	+	asmbl_11495	none	STRG.16579.7,Trinity_GG_26428_c1_g1_i1	2	STRG.16579.2,Trinity_GG_26428_c0_g1_i2	2
scaffold_85	alt_acceptor	3720	3721	-	asmbl_53705	none	STRG.30130.2	1	STRG.30130.1,blat.proc3825162.chain_3289,blat.proc3825162.chain_3290	3
scaffold_17	alt_donor	9956736	9956737	+	asmbl_19135	none	STRG.20610.1,blat.proc3825174.chain_1464	2	STRG.20610.2,blat.proc3825174.chain_1465	2
scaffold_3	retained_exon	11978355	11978457	+	asmbl_40383	none	STRG.3620.2,Trinity_GG_19308_c0_g1_i1,blat.proc3825166.chain_50	3	STRG.3620.3	1
scaffold_1	spliced_intron	39649	39790	-	asmbl_1,asmbl_2,asmbl_3	none	STRG.11.1,STRG.11.2,STRG.11.3,blat.proc3825148.chain_63	4	blat.proc3825148.chain_64	1
scaffold_7	alt_donor	5916584	5916585	-	asmbl_50903	none	blat.proc3825152.chain_1286	1	STRG.8897.1,blat.proc3825152.chain_1287	2
scaffold_2	alternate_exon	17613833	17619276	+	asmbl_25186	none	STRG.2653.2,Trinity_GG_18813_c0_g1_i1,Trinity_GG_18821_c0_g1_i1,blat.proc3825164.chain_2939,blat.proc3825164.chain_2943	5	blat.proc3825164.chain_2944	1
scaffold_12	starts_in_intron	4721689	4721689	-	asmbl_8433	none	blat.proc3825154.chain_3098	1	STRG.14649.2,STRG.14649.3,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	5
scaffold_7	starts_in_intron	12340018	12340018	-	asmbl_51195	none	Trinity_GG_5248_c0_g1_i1,blat.proc3825152.chain_1671	2	STRG.9330.1,blat.proc3825152.chain_1670	2
scaffold_22	alt_acceptor	7901759	7901760	-	asmbl_29441	none	STRG.25136.3	1	STRG.25136.1	1
scaffold_7	retained_intron	12415910	12416003	-	asmbl_51217	none	blat.proc3825152.chain_1703	1	STRG.9346.1,blat.proc3825152.chain_1701,blat.proc3825152.chain_1704,blat.proc3825152.chain_1705	4
scaffold_6	starts_in_intron	7351783	7351783	+	asmbl_47074	none	Trinity_GG_21496_c0_g1_i3,blat.proc3825168.chain_77	2	STRG.7644.1,Trinity_GG_21496_c0_g1_i2,blat.proc3825168.chain_75,blat.proc3825168.chain_76	4
scaffold_27	alt_donor	1553635	1553636	+	asmbl_36027,asmbl_36028	none	STRG.28644.1,STRG.28644.4,blat.proc3825178.chain_1762	3	STRG.28644.2,STRG.28644.3	2
scaffold_3	starts_in_intron	11764292	11764292	-	asmbl_39184	none	blat.proc3825148.chain_3477	1	STRG.3610.1,blat.proc3825148.chain_3476	2
scaffold_17	retained_intron	9868526	9868619	-	asmbl_18217	none	STRG.20601.2	1	STRG.20601.1,STRG.20601.3,blat.proc3825158.chain_1630,blat.proc3825158.chain_1631	4
scaffold_2	starts_in_intron	14361226	14361226	+	asmbl_24922	none	Trinity_GG_18685_c0_g1_i4,blat.proc3825164.chain_2690	2	STRG.2438.1,STRG.2438.2,blat.proc3825164.chain_2689,blat.proc3825164.chain_2691,blat.proc3825164.chain_2692	5
scaffold_5	alternate_exon	3534424	3534765	-	asmbl_43916	none	STRG.5827.1,Trinity_GG_3282_c0_g1_i1,blat.proc3825150.chain_2032	3	STRG.5827.2	1
scaffold_13	alt_acceptor	3820301	3820302	-	asmbl_9590	none	STRG.15711.2	1	STRG.15711.3,blat.proc3825156.chain_573	2
scaffold_15	retained_intron	15188738	15189128	+	asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737	none	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	6	STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3536	5
scaffold_19	alternate_exon	9456245	9456753	+	asmbl_21593	none	Trinity_GG_29686_c1_g1_i4,blat.proc3825174.chain_3387	2	STRG.22377.1,blat.proc3825174.chain_3388	2
scaffold_8	retained_intron	7483592	7484153	-	asmbl_51913	none	Trinity_GG_5574_c0_g1_i5,blat.proc3825152.chain_2255	2	STRG.10078.1,blat.proc3825152.chain_2256,blat.proc3825152.chain_2259	3
scaffold_13	retained_exon	14561660	14563480	-	asmbl_10199	none	STRG.16504.5	1	STRG.16504.1,STRG.16504.4,blat.proc3825156.chain_1271,blat.proc3825156.chain_1272	4
scaffold_17	alt_acceptor	4688354	4688355	-	asmbl_17883	none	STRG.20205.1,blat.proc3825158.chain_1199	2	STRG.20205.2,blat.proc3825158.chain_1198	2
scaffold_3	ends_in_intron	11650115	11650115	-	asmbl_39178	none	blat.proc3825148.chain_3472	1	STRG.3598.1,Trinity_GG_1960_c0_g1_i2,blat.proc3825148.chain_3471	3
scaffold_5	spliced_intron	6847775	6848001	+	asmbl_45450	none	STRG.6094.1,blat.proc3825166.chain_2227	2	blat.proc3825166.chain_2225	1
scaffold_8	alternate_exon	17974177	17974253	-	asmbl_52499	none	STRG.10702.3	1	STRG.10702.2	1
scaffold_27	skipped_exon	2641245	2642085	+	asmbl_36100	none	STRG.28739.1,blat.proc3825178.chain_1854	2	STRG.28739.2,blat.proc3825178.chain_1855	2
scaffold_7	alt_acceptor	18580188	18580189	+	asmbl_50527	none	STRG.9672.1,blat.proc3825168.chain_2185	2	STRG.9672.2	1
scaffold_10	retained_intron	4159649	4159782	-	asmbl_4270	none	blat.proc3825154.chain_810	1	STRG.12253.2,STRG.12253.3,blat.proc3825154.chain_811	3
scaffold_9	ends_in_intron	1285883	1285883	+	asmbl_53811	none	blat.proc3825168.chain_3356	1	STRG.10833.1,blat.proc3825168.chain_3357	2
scaffold_10	spliced_intron	975363	975513	-	asmbl_4018,asmbl_4020,asmbl_4022,asmbl_4023	none	STRG.11979.1,Trinity_GG_6637_c0_g1_i5,Trinity_GG_6637_c0_g1_i6,Trinity_GG_6637_c0_g1_i7,Trinity_GG_6637_c0_g1_i9,blat.proc3825154.chain_471	6	Trinity_GG_6637_c0_g1_i4,blat.proc3825154.chain_472	2
scaffold_27	ends_in_intron	2699468	2699468	-	asmbl_36845	none	Trinity_GG_16109_c0_g1_i2,blat.proc3825162.chain_2001	2	STRG.28746.1,STRG.28746.2,blat.proc3825162.chain_2000	3
scaffold_24	alt_acceptor	9116763	9116764	+	asmbl_32506,asmbl_32507,asmbl_32508,asmbl_32509,asmbl_32511,asmbl_32512	none	STRG.26942.1,blat.proc3825178.chain_172,blat.proc3825178.chain_175,blat.proc3825178.chain_177,blat.proc3825178.chain_178	5	blat.proc3825178.chain_173	1
scaffold_10	spliced_intron	3732814	3732994	+	asmbl_3066	none	STRG.12202.2,blat.proc3825170.chain_915	2	STRG.12202.1,blat.proc3825170.chain_914	2
scaffold_72	alt_acceptor	17502	17503	+	asmbl_51615	none	STRG.30111.2	1	STRG.30111.1	1
scaffold_13	retained_intron	6628167	6628496	-	asmbl_9812	none	Trinity_GG_8986_c0_g1_i3,blat.proc3825156.chain_868	2	Trinity_GG_8986_c0_g1_i4,blat.proc3825156.chain_867	2
scaffold_5	ends_in_intron	17227310	17227310	+	asmbl_46150,asmbl_46151	none	blat.proc3825166.chain_3074,blat.proc3825166.chain_3077	2	STRG.6896.1,STRG.6896.2,blat.proc3825166.chain_3073,blat.proc3825166.chain_3076	4
scaffold_13	ends_in_intron	4376687	4376687	+	asmbl_10789	none	blat.proc3825172.chain_499	1	STRG.15764.1,STRG.15764.2,STRG.15764.3,STRG.15764.4	4
scaffold_9	skipped_exon	8395093	8395925	+	asmbl_54166,asmbl_54168	none	STRG.11261.3,blat.proc3825170.chain_63	2	STRG.11261.2,STRG.11261.4,blat.proc3825170.chain_62	3
scaffold_11	alternate_exon	15084932	15085050	-	asmbl_7181	none	STRG.14277.2	1	STRG.14277.1,blat.proc3825154.chain_2830	2
scaffold_5	alt_donor	9717905	9717906	+	asmbl_45638	none	STRG.6285.2,blat.proc3825166.chain_2491	2	STRG.6285.1,blat.proc3825166.chain_2490	2
scaffold_7	alt_donor	6043362	6043363	-	asmbl_50910,asmbl_50911	none	STRG.8910.2,STRG.8910.3,blat.proc3825152.chain_1341,blat.proc3825152.chain_1344	4	STRG.8910.4,STRG.8910.5,Trinity_GG_5061_c0_g1_i9,blat.proc3825152.chain_1342,blat.proc3825152.chain_1343,blat.proc3825152.chain_1349	6
scaffold_16	retained_intron	4017628	4017730	-	asmbl_17034	none	blat.proc3825158.chain_343	1	STRG.19221.1,blat.proc3825158.chain_342	2
scaffold_500	retained_intron	2254	2461	+	asmbl_46488,asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46493	none	STRG.30357.1,STRG.30357.3,STRG.30357.4,STRG.30357.6,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445,blat.proc3825178.chain_3446	7	STRG.30357.5,blat.proc3825178.chain_3440	2
scaffold_21	starts_in_intron	2622837	2622837	+	asmbl_28414	none	STRG.23897.2	1	STRG.23897.1,blat.proc3825176.chain_1111	2
scaffold_10	alt_donor	393217	393218	+	asmbl_2849	none	STRG.11927.1,Trinity_GG_23950_c1_g1_i1,blat.proc3825170.chain_690	3	STRG.11927.2,Trinity_GG_23950_c1_g1_i3,blat.proc3825170.chain_688	3
scaffold_2	retained_intron	7892477	7892601	+	asmbl_24595	none	Trinity_GG_18472_c0_g1_i3,blat.proc3825164.chain_2209	2	STRG.2085.1,STRG.2085.2,STRG.2085.3,blat.proc3825164.chain_2201,blat.proc3825164.chain_2202,blat.proc3825164.chain_2203,blat.proc3825164.chain_2205,blat.proc3825164.chain_2208,blat.proc3825164.chain_2211	9
scaffold_10	alt_acceptor	1621480	1621481	+	asmbl_2953	none	STRG.12026.6	1	STRG.12026.1,STRG.12026.2,STRG.12026.3,STRG.12026.4,STRG.12026.5,Trinity_GG_23966_c0_g1_i3,Trinity_GG_23966_c0_g1_i4,Trinity_GG_23966_c0_g1_i7,Trinity_GG_23966_c0_g1_i8,Trinity_GG_23966_c0_g1_i9,blat.proc3825170.chain_713,blat.proc3825170.chain_714,blat.proc3825170.chain_715,blat.proc3825170.chain_716,blat.proc3825170.chain_717	15
scaffold_25	skipped_exon	3722400	3724710	+	asmbl_33457,asmbl_33459	none	STRG.27323.2,STRG.27323.3,blat.proc3825178.chain_409	3	STRG.27323.1,blat.proc3825178.chain_408	2
scaffold_8	spliced_intron	7807845	7807927	-	asmbl_51924,asmbl_51925,asmbl_51926,asmbl_51927	none	STRG.10100.1,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316,blat.proc3825152.chain_2318	5	blat.proc3825152.chain_2313	1
scaffold_298	skipped_exon	743	2048	-	asmbl_38659	none	STRG.30263.1	1	STRG.30263.2	1
scaffold_3	retained_exon	5927361	5928299	-	asmbl_38872,asmbl_38875	none	STRG.3252.1,blat.proc3825148.chain_3097,blat.proc3825148.chain_3100	3	blat.proc3825148.chain_3098	1
scaffold_6	spliced_intron	13710244	13710366	-	asmbl_48939	none	STRG.8119.1,blat.proc3825152.chain_462	2	blat.proc3825152.chain_461	1
scaffold_12	retained_exon	14990638	14990697	-	asmbl_9025	none	STRG.15298.2,Trinity_GG_8566_c0_g1_i4,blat.proc3825156.chain_119	3	STRG.15298.1,Trinity_GG_8566_c0_g1_i1,blat.proc3825156.chain_118	3
scaffold_17	spliced_intron	6803623	6804157	-	asmbl_17986,asmbl_17988	none	STRG.20334.2,STRG.20334.3	2	STRG.20334.1	1
scaffold_5	alternate_exon	1692374	1692496	+	asmbl_45142	none	STRG.5724.1,blat.proc3825166.chain_1940	2	STRG.5724.2	1
scaffold_2	spliced_intron	6763081	6764405	+	asmbl_24490,asmbl_24495,asmbl_24497	none	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i2,Trinity_GG_18452_c0_g1_i3,blat.proc3825164.chain_2148,blat.proc3825164.chain_2149,blat.proc3825164.chain_2151	7	Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i8,Trinity_GG_18452_c0_g1_i9,blat.proc3825164.chain_2146,blat.proc3825164.chain_2147,blat.proc3825164.chain_2150,blat.proc3825164.chain_2152	8
scaffold_3	retained_intron	3261824	3262038	+	asmbl_39944	none	blat.proc3825164.chain_3387	1	STRG.3072.2,STRG.3072.6	2
scaffold_17	alt_donor	1292421	1292422	-	asmbl_17683	none	blat.proc3825158.chain_972	1	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_973,blat.proc3825158.chain_975	4
scaffold_21	retained_intron	1697777	1697954	+	asmbl_28358	none	blat.proc3825176.chain_1073	1	STRG.23822.1,Trinity_GG_30533_c0_g1_i3,blat.proc3825176.chain_1071,blat.proc3825176.chain_1072,blat.proc3825176.chain_1074	5
scaffold_25	starts_in_intron	2675338	2675338	+	asmbl_33401	none	blat.proc3825178.chain_314	1	STRG.27236.1,blat.proc3825178.chain_312	2
scaffold_10	starts_in_intron	11450944	11450944	-	asmbl_4777	none	blat.proc3825154.chain_1386	1	STRG.12798.1,blat.proc3825154.chain_1387	2
scaffold_26	spliced_intron	9315311	9315414	+	asmbl_35214,asmbl_35215,asmbl_35216,asmbl_35222,asmbl_35224	none	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1612,blat.proc3825178.chain_1618	6	blat.proc3825178.chain_1616	1
scaffold_13	spliced_intron	2340633	2341002	+	asmbl_10598,asmbl_10604,asmbl_10605	none	STRG.15564.2,STRG.15564.4,STRG.15564.5	3	STRG.15564.10	1
scaffold_27	skipped_exon	3023796	3025670	+	asmbl_36162,asmbl_36163,asmbl_36171	none	STRG.28790.1,STRG.28790.2,blat.proc3825178.chain_1872	3	blat.proc3825178.chain_1868	1
scaffold_26	spliced_intron	3651416	3651580	-	asmbl_35498	none	STRG.28045.2,blat.proc3825162.chain_1282	2	STRG.28045.1,blat.proc3825162.chain_1283	2
scaffold_21	alt_acceptor	6921894	6921895	-	asmbl_27752,asmbl_27753,asmbl_27754	none	STRG.24221.1,Trinity_GG_13500_c0_g1_i2,blat.proc3825160.chain_1341,blat.proc3825160.chain_1342	4	STRG.24221.2	1
scaffold_23	alt_donor	4226698	4226699	-	asmbl_30848,asmbl_30850,asmbl_30853	none	STRG.25839.3,STRG.25839.5,blat.proc3825160.chain_2986,blat.proc3825160.chain_2989	4	STRG.25839.1,STRG.25839.2,blat.proc3825160.chain_2987,blat.proc3825160.chain_2988	4
scaffold_15	retained_intron	6793556	6793655	-	asmbl_14257	none	STRG.18295.1,blat.proc3825156.chain_3138	2	STRG.18295.2,blat.proc3825156.chain_3137	2
scaffold_6	alternate_exon	10746664	10749989	+	asmbl_47292	none	STRG.7893.1,blat.proc3825168.chain_365	2	blat.proc3825168.chain_364	1
scaffold_4	spliced_intron	15907621	15907662	-	asmbl_43127	none	STRG.5167.2	1	STRG.5167.1,Trinity_GG_2866_c1_g1_i1,blat.proc3825150.chain_1306	3
scaffold_5	alt_acceptor	6733174	6733175	+	asmbl_45447,asmbl_45448	none	STRG.6078.1,STRG.6078.2,blat.proc3825166.chain_2281,blat.proc3825166.chain_2282	4	STRG.6078.3	1
scaffold_7	spliced_intron	12451061	12451154	-	asmbl_51226	none	Trinity_GG_5252_c0_g1_i10,blat.proc3825152.chain_1688	2	Trinity_GG_5252_c0_g1_i7,blat.proc3825152.chain_1692	2
scaffold_4	alt_acceptor	6602258	6602259	+	asmbl_41414,asmbl_41417	none	STRG.4521.1,blat.proc3825166.chain_972,blat.proc3825166.chain_973	3	STRG.4521.2,blat.proc3825166.chain_971	2
scaffold_27	ends_in_intron	3023102	3023102	+	asmbl_36164	none	blat.proc3825178.chain_1870	1	STRG.28790.1,STRG.28790.2,blat.proc3825178.chain_1868,blat.proc3825178.chain_1871,blat.proc3825178.chain_1872,blat.proc3825178.chain_1873	6
scaffold_12	retained_exon	9669326	9669967	+	asmbl_7867	none	STRG.14944.2,Trinity_GG_25536_c0_g1_i3,blat.proc3825170.chain_3434	3	Trinity_GG_25536_c0_g1_i1,blat.proc3825170.chain_3436	2
scaffold_17	retained_intron	3035297	3035419	-	asmbl_17793	none	STRG.20095.1,Trinity_GG_11256_c0_g1_i1,blat.proc3825158.chain_1099	3	blat.proc3825158.chain_1098	1
scaffold_22	alternate_exon	1005521	1005779	+	asmbl_29912	none	STRG.24754.1,Trinity_GG_30985_c0_g1_i3,blat.proc3825176.chain_1857	3	STRG.24754.2,STRG.24754.3,Trinity_GG_30985_c0_g1_i9,blat.proc3825176.chain_1858,blat.proc3825176.chain_1859,blat.proc3825176.chain_1860,blat.proc3825176.chain_1861	7
scaffold_15	alt_donor	12781083	12781084	+	asmbl_15605	none	STRG.18730.2,blat.proc3825172.chain_3399	2	STRG.18730.1,blat.proc3825172.chain_3398	2
scaffold_17	alt_donor	1292435	1292436	-	asmbl_17680	none	STRG.19964.4,blat.proc3825158.chain_975	2	STRG.19964.1,blat.proc3825158.chain_972,blat.proc3825158.chain_973	3
scaffold_7	ends_in_intron	12541080	12541080	-	asmbl_51240	none	Trinity_GG_5257_c0_g1_i2,blat.proc3825152.chain_1716	2	STRG.9363.1,STRG.9363.3,STRG.9363.4,STRG.9363.5,blat.proc3825152.chain_1713,blat.proc3825152.chain_1717	6
scaffold_10	starts_in_intron	13423705	13423705	+	asmbl_3597	none	Trinity_GG_24442_c2_g1_i1	1	STRG.12932.1	1
scaffold_1	spliced_intron	5738505	5739159	+	asmbl_1781	none	blat.proc3825164.chain_528	1	blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_529	3
scaffold_26	retained_intron	4925304	4925435	-	asmbl_35599	none	STRG.28205.1,Trinity_GG_15797_c0_g1_i1,blat.proc3825162.chain_1463	3	STRG.28205.2	1
scaffold_13	spliced_intron	3054628	3054794	-	asmbl_9512	none	STRG.15613.2	1	STRG.15613.1,STRG.15613.3,Trinity_GG_8738_c0_g1_i1,blat.proc3825156.chain_464,blat.proc3825156.chain_465	5
scaffold_4	spliced_intron	4113203	4113283	-	asmbl_42480,asmbl_42481,asmbl_42484,asmbl_42485	none	STRG.4317.1,STRG.4317.2,blat.proc3825150.chain_476,blat.proc3825150.chain_478,blat.proc3825150.chain_481,blat.proc3825150.chain_482	6	blat.proc3825150.chain_477,blat.proc3825150.chain_479,blat.proc3825150.chain_480	3
scaffold_9	spliced_intron	15394570	15395108	+	asmbl_54566,asmbl_54568,asmbl_54571,asmbl_54572	none	STRG.11741.1,STRG.11741.3,Trinity_GG_23876_c0_g1_i2,Trinity_GG_23876_c0_g1_i5,Trinity_GG_23876_c0_g1_i6,Trinity_GG_23876_c0_g1_i7,blat.proc3825170.chain_552,blat.proc3825170.chain_553,blat.proc3825170.chain_555,blat.proc3825170.chain_557	10	STRG.11741.2,Trinity_GG_23876_c0_g1_i8,blat.proc3825170.chain_556	3
scaffold_26	ends_in_intron	9917695	9917695	-	asmbl_35800,asmbl_35801,asmbl_35802	none	STRG.28525.2,STRG.28525.3,blat.proc3825162.chain_1640	3	STRG.28525.1,Trinity_GG_15896_c0_g1_i4,blat.proc3825162.chain_1641	3
scaffold_18	ends_in_intron	13807635	13807635	+	asmbl_21044	none	Trinity_GG_29370_c4_g1_i1,blat.proc3825174.chain_2846	2	Trinity_GG_29370_c1_g1_i3,Trinity_GG_29370_c1_g1_i4,blat.proc3825174.chain_2840,blat.proc3825174.chain_2841	4
scaffold_5	alternate_exon	10143115	10143166	-	asmbl_44313	none	STRG.6315.1	1	Trinity_GG_3552_c0_g1_i2,blat.proc3825150.chain_2506	2
scaffold_4	alt_donor	13113597	13113598	-	asmbl_42973,asmbl_42974	none	STRG.4950.3,blat.proc3825150.chain_1128	2	STRG.4950.1,STRG.4950.2,blat.proc3825150.chain_1129,blat.proc3825150.chain_1130	4
scaffold_5	alt_donor	6664267	6664268	-	asmbl_44127	none	STRG.6073.3	1	STRG.6073.1,STRG.6073.2	2
scaffold_9	spliced_intron	12831578	12831611	+	asmbl_54471	none	STRG.11607.3	1	STRG.11607.2	1
scaffold_14	alternate_exon	15911175	15911213	-	asmbl_13762	none	STRG.17833.4,Trinity_GG_10019_c0_g1_i2,blat.proc3825156.chain_2646	3	STRG.17833.2,blat.proc3825156.chain_2645	2
scaffold_26	alt_donor	9847061	9847062	+	asmbl_35278,asmbl_35279,asmbl_35283,asmbl_35285,asmbl_35286,asmbl_35287,asmbl_35289,asmbl_35290	none	STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1576,blat.proc3825178.chain_1577,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580	10	STRG.28546.1,blat.proc3825178.chain_1575,blat.proc3825178.chain_1581	3
scaffold_19	ends_in_intron	165674	165674	+	asmbl_21183	none	blat.proc3825174.chain_2912	1	STRG.21830.2	1
scaffold_21	retained_exon	255962	256535	-	asmbl_27285,asmbl_27294,asmbl_27297	none	STRG.23725.3,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_809	4	blat.proc3825160.chain_807	1
scaffold_20	spliced_intron	10070223	10070662	-	asmbl_26078,asmbl_26079	none	STRG.23549.1,Trinity_GG_13135_c0_g1_i2,blat.proc3825160.chain_632,blat.proc3825160.chain_634	4	STRG.23549.2,blat.proc3825160.chain_633	2
scaffold_26	alt_acceptor	1942317	1942318	-	asmbl_35426	none	STRG.27933.2	1	STRG.27933.1	1
scaffold_25	alternate_exon	7206771	7206829	-	asmbl_34386	none	STRG.27578.2	1	STRG.27578.1	1
scaffold_10	ends_in_intron	2775436	2775436	+	asmbl_3012	none	blat.proc3825170.chain_853	1	STRG.12098.1,blat.proc3825170.chain_852	2
scaffold_9	alt_acceptor	6941763	6941764	+	asmbl_54112	none	STRG.11205.2	1	STRG.11205.1,blat.proc3825168.chain_3733	2
scaffold_4	alternate_exon	1320745	1321383	-	asmbl_42365	none	STRG.4172.2	1	STRG.4172.1,blat.proc3825150.chain_406	2
scaffold_10	skipped_exon	13914729	13915905	+	asmbl_3630,asmbl_3631	none	STRG.12983.2,blat.proc3825170.chain_1596,blat.proc3825170.chain_1597	3	STRG.12983.1,blat.proc3825170.chain_1595	2
scaffold_27	starts_in_intron	3967755	3967755	-	asmbl_36940	none	blat.proc3825162.chain_2113	1	blat.proc3825162.chain_2112	1
scaffold_27	ends_in_intron	2642025	2642025	+	asmbl_36101	none	blat.proc3825178.chain_1856	1	STRG.28739.2,blat.proc3825178.chain_1855	2
scaffold_2	alt_donor	13079501	13079502	-	asmbl_23488,asmbl_23491,asmbl_23493,asmbl_23495	none	STRG.2337.3,STRG.2337.4,STRG.2337.5,blat.proc3825148.chain_2341,blat.proc3825148.chain_2345	5	STRG.2337.1,STRG.2337.2,blat.proc3825148.chain_2340,blat.proc3825148.chain_2342,blat.proc3825148.chain_2343	5
scaffold_6	alternate_exon	9710819	9711247	-	asmbl_48635	none	STRG.7819.1	1	STRG.7819.3,blat.proc3825152.chain_190	2
scaffold_17	alternate_exon	2355867	2360164	+	asmbl_18639,asmbl_18642	none	STRG.20030.5,STRG.20030.7,Trinity_GG_28283_c0_g1_i1,blat.proc3825174.chain_906	4	STRG.20030.3	1
scaffold_19	retained_intron	11460464	11460646	-	asmbl_22388,asmbl_22390	none	blat.proc3825158.chain_3199,blat.proc3825158.chain_3201	2	STRG.22479.1,blat.proc3825158.chain_3198,blat.proc3825158.chain_3200	3
scaffold_14	retained_exon	7432963	7432983	+	asmbl_12158	none	STRG.17180.2,blat.proc3825172.chain_1873	2	STRG.17180.1,STRG.17180.3,blat.proc3825172.chain_1872	3
scaffold_19	alternate_exon	13215481	13215874	-	asmbl_22615	none	Trinity_GG_12588_c1_g1_i13,blat.proc3825158.chain_3429	2	STRG.22653.1,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3436	7
scaffold_12	alt_donor	6527067	6527068	-	asmbl_8541	none	STRG.14748.1	1	STRG.14748.2,blat.proc3825154.chain_3259,blat.proc3825154.chain_3260	3
scaffold_3	skipped_exon	7408578	7410004	-	asmbl_38966	none	STRG.3339.2,blat.proc3825148.chain_3220	2	STRG.3339.1,blat.proc3825148.chain_3221	2
scaffold_10	alternate_exon	3928828	3928980	-	asmbl_4246	none	STRG.12235.5	1	STRG.12235.1,blat.proc3825154.chain_797,blat.proc3825154.chain_801,blat.proc3825154.chain_802	4
scaffold_7	starts_in_intron	223047	223047	-	asmbl_50678	none	blat.proc3825152.chain_1086	1	Trinity_GG_4927_c0_g1_i1,blat.proc3825152.chain_1087	2
scaffold_11	retained_exon	9817110	9817177	+	asmbl_5902	none	STRG.13997.1,blat.proc3825170.chain_2535	2	STRG.13997.2	1
scaffold_13	retained_intron	400473	401576	-	asmbl_9337,asmbl_9338,asmbl_9339,asmbl_9341,asmbl_9350	none	Trinity_GG_8688_c0_g2_i1,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i3,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_367,blat.proc3825156.chain_368,blat.proc3825156.chain_369,blat.proc3825156.chain_370,blat.proc3825156.chain_371	9	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24
scaffold_2	starts_in_intron	15269260	15269260	+	asmbl_25007	none	Trinity_GG_18659_c2_g1_i1,blat.proc3825164.chain_2623	2	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7
scaffold_6	starts_in_intron	10890737	10890737	+	asmbl_47302	none	Trinity_GG_21643_c0_g1_i1,blat.proc3825168.chain_346	2	STRG.7905.1,blat.proc3825168.chain_347	2
scaffold_18	alt_donor	4848613	4848614	+	asmbl_20568	none	STRG.21278.3,Trinity_GG_28997_c0_g1_i5,blat.proc3825174.chain_2169	3	STRG.21278.2,Trinity_GG_28997_c0_g1_i1,blat.proc3825174.chain_2171	3
scaffold_2	starts_in_intron	4592022	4592022	+	asmbl_24368	none	Trinity_GG_18361_c0_g1_i1,blat.proc3825164.chain_2016	2	STRG.1883.1,blat.proc3825164.chain_2017	2
scaffold_14	alt_donor	13380947	13380948	-	asmbl_13638,asmbl_13639	none	STRG.17630.1,Trinity_GG_9874_c0_g1_i4,blat.proc3825156.chain_2403,blat.proc3825156.chain_2404	4	STRG.17630.2,blat.proc3825156.chain_2402	2
scaffold_6	spliced_intron	16272558	16272579	-	asmbl_49107	none	STRG.8351.2	1	STRG.8351.1,Trinity_GG_4728_c0_g1_i1	2
scaffold_6	alt_donor	3326080	3326081	+	asmbl_46831,asmbl_46832	none	STRG.7340.1,STRG.7340.2,blat.proc3825166.chain_3445,blat.proc3825166.chain_3446	4	STRG.7340.3	1
scaffold_16	retained_intron	810150	810259	-	asmbl_16909,asmbl_16910,asmbl_16911	none	blat.proc3825158.chain_129,blat.proc3825158.chain_131,blat.proc3825158.chain_132	3	STRG.19064.2,blat.proc3825158.chain_128	2
scaffold_17	alt_acceptor	10014790	10014791	+	asmbl_19151	none	STRG.20616.1,Trinity_GG_28603_c0_g1_i1	2	STRG.20616.2,Trinity_GG_28603_c0_g1_i3	2
scaffold_29	spliced_intron	56911	57031	+	asmbl_38639	none	blat.proc3825178.chain_3174	1	STRG.30016.1,Trinity_GG_33925_c1_g1_i1,blat.proc3825178.chain_3149	3
scaffold_6	starts_in_intron	12868549	12868549	+	asmbl_47436	none	Trinity_GG_21711_c0_g1_i3,blat.proc3825168.chain_487	2	STRG.8045.1,blat.proc3825168.chain_485	2
scaffold_3	spliced_intron	5951042	5951165	-	asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38882,asmbl_38885	none	STRG.3259.1,STRG.3259.3,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3164,blat.proc3825148.chain_3165	6	STRG.3259.2,blat.proc3825148.chain_3161,blat.proc3825148.chain_3163	3
scaffold_15	alt_acceptor	2071395	2071396	-	asmbl_13990	none	STRG.18002.2	1	STRG.18002.1	1
scaffold_5	alt_acceptor	15801908	15801909	-	asmbl_44731	none	STRG.6776.2	1	STRG.6776.1	1
scaffold_3	retained_exon	14670173	14670250	+	asmbl_40541,asmbl_40543	none	STRG.3810.2,STRG.3810.3,Trinity_GG_19449_c0_g1_i1,blat.proc3825166.chain_299	4	STRG.3810.1,Trinity_GG_19449_c0_g1_i3,blat.proc3825166.chain_300	3
scaffold_15	spliced_intron	11562810	11563294	-	asmbl_14522	none	STRG.18618.1,blat.proc3825156.chain_3525	2	blat.proc3825156.chain_3524	1
scaffold_13	retained_exon	518334	518380	+	asmbl_10488,asmbl_10490	none	STRG.15449.4,blat.proc3825172.chain_183	2	STRG.15449.2,STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_179,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_184	8
scaffold_5	alt_donor	10600132	10600133	-	asmbl_44373	none	STRG.6346.1,blat.proc3825150.chain_2548	2	STRG.6346.2,STRG.6346.3,blat.proc3825150.chain_2546,blat.proc3825150.chain_2547	4
scaffold_13	starts_in_intron	742416	742416	+	asmbl_10517	none	blat.proc3825172.chain_192	1	STRG.15461.1,STRG.15461.2,STRG.15461.3,Trinity_GG_25811_c0_g1_i2,blat.proc3825172.chain_190,blat.proc3825172.chain_191,blat.proc3825172.chain_193	7
scaffold_3	retained_intron	7917839	7917880	-	asmbl_39001,asmbl_39002	none	blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	2	STRG.3377.2	1
scaffold_8	starts_in_intron	6953776	6953776	+	asmbl_52979	none	blat.proc3825168.chain_2606	1	STRG.10060.1,blat.proc3825168.chain_2605	2
scaffold_11	retained_intron	2061239	2061594	+	asmbl_5352,asmbl_5353	none	STRG.13366.2,STRG.13366.3,blat.proc3825170.chain_1922,blat.proc3825170.chain_1924	4	STRG.13366.1	1
scaffold_22	alternate_exon	4364154	4364206	+	asmbl_29991	none	Trinity_GG_31043_c1_g1_i2,blat.proc3825176.chain_1943	2	STRG.24855.2	1
scaffold_24	skipped_exon	6784331	6785132	-	asmbl_32973	none	STRG.26733.1	1	STRG.26733.2,STRG.26733.4	2
scaffold_19	spliced_intron	12958865	12958948	-	asmbl_22564,asmbl_22568	none	STRG.22612.1,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402	3	Trinity_GG_12582_c0_g1_i6,blat.proc3825158.chain_3404	2
scaffold_6	spliced_intron	11499265	11499368	+	asmbl_47336	none	STRG.7947.1,Trinity_GG_21639_c0_g3_i1,blat.proc3825168.chain_340	3	Trinity_GG_21639_c0_g1_i1,blat.proc3825168.chain_337	2
scaffold_2	alternate_exon	14343127	14344424	-	asmbl_23597	none	blat.proc3825148.chain_2418	1	blat.proc3825148.chain_2417	1
scaffold_4	alt_acceptor	4121588	4121589	-	asmbl_42500	none	STRG.4329.2	1	STRG.4329.1,blat.proc3825150.chain_593	2
scaffold_7	alt_acceptor	8659757	8659758	-	asmbl_51028	none	STRG.9099.2	1	STRG.9099.1,blat.proc3825152.chain_1496,blat.proc3825152.chain_1499	3
scaffold_5	alt_donor	8131648	8131649	+	asmbl_45529	none	STRG.6188.2,blat.proc3825166.chain_2392	2	STRG.6188.1,blat.proc3825166.chain_2391	2
scaffold_5	starts_in_intron	9812506	9812506	+	asmbl_45649	none	Trinity_GG_20744_c0_g1_i1,blat.proc3825166.chain_2500	2	STRG.6299.1,STRG.6299.2,blat.proc3825166.chain_2499,blat.proc3825166.chain_2501	4
scaffold_12	spliced_intron	14171917	14172236	+	asmbl_8064	none	STRG.15252.2,blat.proc3825172.chain_3	2	Trinity_GG_25713_c0_g1_i9,blat.proc3825172.chain_5	2
scaffold_28	ends_in_intron	7357368	7357368	+	asmbl_37667	none	blat.proc3825178.chain_2957	1	STRG.29807.1,Trinity_GG_33819_c0_g1_i3,blat.proc3825178.chain_2956	3
scaffold_23	ends_in_intron	5616090	5616090	-	asmbl_30925,asmbl_30926,asmbl_30927,asmbl_30930	none	STRG.25937.2,STRG.25937.3,STRG.25937.4,Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057,blat.proc3825160.chain_3058,blat.proc3825160.chain_3059	7	STRG.25937.1	1
scaffold_6	retained_intron	19074609	19074822	+	asmbl_47871	none	Trinity_GG_21983_c0_g1_i6,blat.proc3825168.chain_951	2	STRG.8575.1,STRG.8575.2,STRG.8575.3,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i4,Trinity_GG_21983_c0_g1_i5,Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_948,blat.proc3825168.chain_949,blat.proc3825168.chain_950,blat.proc3825168.chain_952	11
scaffold_13	retained_intron	4532541	4532619	+	asmbl_10810	none	STRG.15780.1,Trinity_GG_25975_c0_g1_i2,blat.proc3825172.chain_504	3	STRG.15780.2,Trinity_GG_25975_c0_g1_i1,blat.proc3825172.chain_505	3
scaffold_1	retained_intron	20354313	20354546	+	asmbl_2623	none	blat.proc3825164.chain_1584	1	STRG.1396.1,STRG.1396.6,STRG.1396.8,blat.proc3825164.chain_1585,blat.proc3825164.chain_1587,blat.proc3825164.chain_1588	6
scaffold_3030	spliced_intron	488	641	-	asmbl_40916	none	STRG.30815.2	1	STRG.30815.1,Trinity_GG_17288_c0_g1_i1,blat.proc3825164.chain_46	3
scaffold_2	skipped_exon	5374792	5376203	-	asmbl_23145	none	STRG.1946.2,blat.proc3825148.chain_1907	2	blat.proc3825148.chain_1906	1
scaffold_13	spliced_intron	3810685	3810836	-	asmbl_9582,asmbl_9584	none	STRG.15712.1,blat.proc3825156.chain_542,blat.proc3825156.chain_545	3	blat.proc3825156.chain_543,blat.proc3825156.chain_546	2
scaffold_10	retained_exon	2675550	2675608	+	asmbl_2991,asmbl_2994	none	STRG.12083.3,STRG.12083.4,blat.proc3825170.chain_832	3	STRG.12083.1,STRG.12083.2	2
scaffold_21	starts_in_intron	10001909	10001909	-	asmbl_27998	none	blat.proc3825160.chain_1575	1	STRG.24467.1,blat.proc3825160.chain_1576	2
scaffold_5	spliced_intron	8539438	8539947	-	asmbl_44214,asmbl_44215,asmbl_44218	none	STRG.6198.1,STRG.6198.5,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419	4	blat.proc3825150.chain_2422,blat.proc3825150.chain_2423	2
scaffold_19	retained_intron	12105421	12105533	+	asmbl_21742	none	blat.proc3825174.chain_3496	1	STRG.22538.1,blat.proc3825174.chain_3495	2
scaffold_10	ends_in_intron	9059903	9059903	-	asmbl_4665	none	Trinity_GG_7041_c1_g1_i1,blat.proc3825154.chain_1206	2	STRG.12655.1,STRG.12655.2,STRG.12655.3,blat.proc3825154.chain_1198,blat.proc3825154.chain_1199,blat.proc3825154.chain_1202,blat.proc3825154.chain_1203,blat.proc3825154.chain_1204	8
scaffold_21	alt_donor	11346200	11346201	-	asmbl_28123	none	STRG.24614.2	1	STRG.24614.1	1
scaffold_1	alternate_exon	20469580	20470397	-	asmbl_1182	none	STRG.1398.1	1	STRG.1398.2	1
scaffold_28	retained_intron	8030132	8030254	+	asmbl_37718	none	Trinity_GG_33831_c0_g1_i1	1	STRG.29874.2	1
scaffold_13	alternate_exon	8896041	8896069	-	asmbl_9995	none	STRG.16155.3,Trinity_GG_9057_c0_g1_i1,blat.proc3825156.chain_1023	3	STRG.16155.2	1
scaffold_7	starts_in_intron	1517758	1517758	+	asmbl_49613	none	STRG.8646.2	1	STRG.8646.1,blat.proc3825168.chain_1051	2
scaffold_9	ends_in_intron	9603523	9603523	-	asmbl_55213	none	Trinity_GG_6285_c2_g1_i1,blat.proc3825152.chain_3601	2	STRG.11328.1,STRG.11328.2,Trinity_GG_6285_c0_g1_i1,blat.proc3825152.chain_3599	4
scaffold_27	retained_intron	2997750	2997932	+	asmbl_36155,asmbl_36157,asmbl_36158	none	STRG.28786.4,blat.proc3825178.chain_1902,blat.proc3825178.chain_1903	3	STRG.28786.5	1
scaffold_15	retained_intron	9818455	9818660	+	asmbl_15415,asmbl_15420	none	STRG.18497.3,Trinity_GG_27412_c0_g1_i2,blat.proc3825172.chain_3080,blat.proc3825172.chain_3084	4	STRG.18497.1,STRG.18497.2,blat.proc3825172.chain_3081,blat.proc3825172.chain_3082	4
scaffold_1	retained_exon	19695156	19695224	-	asmbl_1153	none	STRG.1358.1,blat.proc3825148.chain_1352	2	STRG.1358.2,blat.proc3825148.chain_1353	2
scaffold_19	spliced_intron	10302844	10303671	+	asmbl_21644	none	STRG.22416.4,Trinity_GG_29710_c0_g1_i3,blat.proc3825174.chain_3426	3	STRG.22416.2,blat.proc3825174.chain_3425	2
scaffold_1	retained_intron	5957952	5958646	+	asmbl_1800	none	STRG.396.3,Trinity_GG_17582_c2_g1_i2,Trinity_GG_17582_c2_g1_i4,blat.proc3825164.chain_554,blat.proc3825164.chain_555	5	STRG.396.2,Trinity_GG_17582_c2_g1_i1,blat.proc3825164.chain_556	3
scaffold_1	spliced_intron	4226072	4226335	+	asmbl_1641,asmbl_1644	none	STRG.254.2,blat.proc3825164.chain_378,blat.proc3825164.chain_380,blat.proc3825164.chain_381	4	Trinity_GG_17494_c1_g1_i1,blat.proc3825164.chain_382	2
scaffold_4	starts_in_intron	14571324	14571324	+	asmbl_41890	none	STRG.5073.3,blat.proc3825166.chain_1433	2	STRG.5073.1,STRG.5073.2,blat.proc3825166.chain_1431,blat.proc3825166.chain_1432	4
scaffold_10	skipped_exon	17394143	17395941	+	asmbl_3774	none	STRG.13190.3	1	STRG.13190.1,STRG.13190.2	2
scaffold_18	starts_in_intron	5986010	5986010	+	asmbl_20637	none	Trinity_GG_29059_c6_g1_i1,blat.proc3825174.chain_2298	2	blat.proc3825174.chain_2286,blat.proc3825174.chain_2287,blat.proc3825174.chain_2288,blat.proc3825174.chain_2289,blat.proc3825174.chain_2290,blat.proc3825174.chain_2291,blat.proc3825174.chain_2292,blat.proc3825174.chain_2293	8
scaffold_7	retained_intron	13019692	13019783	-	asmbl_51284	none	blat.proc3825152.chain_1809	1	STRG.9415.1	1
scaffold_17	alternate_exon	7121471	7121578	-	asmbl_18049	none	STRG.20383.2	1	STRG.20383.1	1
scaffold_25	retained_exon	4319475	4319528	+	asmbl_33486,asmbl_33489,asmbl_33490	none	STRG.27360.1,STRG.27360.3,Trinity_GG_32398_c0_g1_i1,blat.proc3825178.chain_466,blat.proc3825178.chain_469	5	STRG.27360.2,Trinity_GG_32398_c0_g1_i2,blat.proc3825178.chain_467,blat.proc3825178.chain_468	4
scaffold_3	retained_intron	10937871	10938064	+	asmbl_40323	none	STRG.3546.1,blat.proc3825166.chain_62	2	STRG.3546.2,blat.proc3825166.chain_60	2
scaffold_13	starts_in_intron	11381630	11381630	-	asmbl_10089	none	STRG.16301.5	1	STRG.16301.1,blat.proc3825156.chain_1174	2
scaffold_10	retained_exon	1292095	1292163	+	asmbl_2923	none	STRG.12028.1,blat.proc3825170.chain_725	2	STRG.12028.2	1
scaffold_7	alt_acceptor	1679718	1679719	+	asmbl_49618	none	STRG.8650.1,Trinity_GG_22070_c0_g1_i1,blat.proc3825168.chain_1149	3	STRG.8650.2	1
scaffold_26	alternate_exon	4572836	4585123	-	asmbl_35565	none	STRG.28173.1,blat.proc3825162.chain_1421	2	STRG.28173.2,blat.proc3825162.chain_1420	2
scaffold_5	spliced_intron	15041706	15041804	-	asmbl_44638,asmbl_44639,asmbl_44640	none	STRG.6698.1,STRG.6698.2,STRG.6698.3,blat.proc3825150.chain_2828,blat.proc3825150.chain_2829,blat.proc3825150.chain_2834	6	Trinity_GG_3732_c0_g3_i1,blat.proc3825150.chain_2833	2
scaffold_22	retained_intron	4221540	4221851	-	asmbl_29221	none	blat.proc3825160.chain_2077	1	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2074,blat.proc3825160.chain_2075,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	11
scaffold_2	starts_in_intron	9814000	9814000	-	asmbl_23392	none	STRG.2196.3	1	STRG.2196.1,STRG.2196.2,blat.proc3825148.chain_2227,blat.proc3825148.chain_2228	4
scaffold_10	alt_donor	557658	557659	-	asmbl_3968	none	STRG.11937.2	1	STRG.11937.1,Trinity_GG_6599_c0_g1_i2,blat.proc3825154.chain_398,blat.proc3825154.chain_399	4
scaffold_18	retained_intron	2834262	2835573	+	asmbl_20426	none	Trinity_GG_28933_c0_g1_i5,blat.proc3825174.chain_2054	2	STRG.21142.4,blat.proc3825174.chain_2046	2
scaffold_5	alt_donor	4773598	4773599	-	asmbl_44013	none	STRG.5941.3	1	STRG.5941.1,STRG.5941.4	2
scaffold_13	retained_intron	5841697	5842514	-	asmbl_9732	none	blat.proc3825156.chain_771	1	STRG.15894.1,blat.proc3825156.chain_773	2
scaffold_21	spliced_intron	254930	255185	-	asmbl_27282,asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27286,asmbl_27291	none	STRG.23725.2,STRG.23725.3,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_807,blat.proc3825160.chain_809	6	STRG.23725.4,blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	4
scaffold_17	retained_intron	2535887	2536718	-	asmbl_17757	none	STRG.20049.2,blat.proc3825158.chain_1073	2	STRG.20049.1,STRG.20049.3,blat.proc3825158.chain_1071,blat.proc3825158.chain_1072,blat.proc3825158.chain_1076	5
scaffold_20	alt_acceptor	7103318	7103319	-	asmbl_25878	none	STRG.23282.2,blat.proc3825160.chain_375	2	STRG.23282.3,Trinity_GG_12993_c0_g2_i1,blat.proc3825160.chain_374,blat.proc3825160.chain_377	4
scaffold_7	alt_donor	7790075	7790076	-	asmbl_50975,asmbl_50976	none	STRG.9034.2,Trinity_GG_5091_c0_g1_i2,Trinity_GG_5091_c0_g1_i7,blat.proc3825152.chain_1415,blat.proc3825152.chain_1418	5	STRG.9034.1,Trinity_GG_5091_c0_g1_i4,Trinity_GG_5091_c0_g1_i5,blat.proc3825152.chain_1414,blat.proc3825152.chain_1417	5
scaffold_3	alt_donor	14466923	14466924	+	asmbl_40526	none	STRG.3786.2	1	STRG.3786.1,Trinity_GG_19437_c0_g1_i1,blat.proc3825166.chain_282	3
scaffold_20	alternate_exon	12075689	12076778	-	asmbl_26215	none	Trinity_GG_13163_c0_g1_i1,blat.proc3825160.chain_689	2	STRG.23706.2	1
scaffold_7	alt_acceptor	18784047	18784048	+	asmbl_50532,asmbl_50533	none	STRG.9696.2,STRG.9696.4	2	STRG.9696.1	1
scaffold_13	ends_in_intron	3428644	3428644	+	asmbl_10688	none	Trinity_GG_25878_c0_g1_i2,blat.proc3825172.chain_339	2	STRG.15650.1,Trinity_GG_25878_c0_g1_i1,blat.proc3825172.chain_340	3
scaffold_8	retained_intron	10245429	10245640	+	asmbl_53167	none	blat.proc3825168.chain_2729	1	STRG.10282.1,STRG.10282.2,STRG.10282.3,STRG.10282.4,blat.proc3825168.chain_2730,blat.proc3825168.chain_2731,blat.proc3825168.chain_2733,blat.proc3825168.chain_2734	8
scaffold_23	alt_donor	6923923	6923924	-	asmbl_30995	none	STRG.26020.2,blat.proc3825160.chain_3135	2	STRG.26020.1,blat.proc3825160.chain_3134	2
scaffold_12	alt_acceptor	13110266	13110267	-	asmbl_8917	none	STRG.15201.2,Trinity_GG_8497_c0_g1_i3,blat.proc3825154.chain_3714	3	STRG.15201.1	1
scaffold_14	alt_acceptor	1970217	1970218	+	asmbl_11842	none	STRG.16821.1,blat.proc3825172.chain_1594	2	STRG.16821.2	1
scaffold_5	retained_intron	8539438	8539947	-	asmbl_44216,asmbl_44219	none	blat.proc3825150.chain_2422,blat.proc3825150.chain_2423	2	STRG.6198.1,STRG.6198.5,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419	4
scaffold_7	alt_acceptor	17737513	17737514	+	asmbl_50493	none	STRG.9619.2	1	STRG.9619.1,blat.proc3825168.chain_2072,blat.proc3825168.chain_2074	3
scaffold_16	retained_intron	325094	325177	-	asmbl_16858,asmbl_16859	none	blat.proc3825158.chain_169,blat.proc3825158.chain_170	2	STRG.19029.1,STRG.19029.2,blat.proc3825158.chain_167,blat.proc3825158.chain_168,blat.proc3825158.chain_171,blat.proc3825158.chain_172	6
scaffold_23	alternate_exon	5581102	5583385	+	asmbl_31580	none	STRG.25933.5,blat.proc3825176.chain_2841	2	STRG.25933.4	1
scaffold_15	alt_donor	9873384	9873385	+	asmbl_15431	none	blat.proc3825172.chain_3108	1	STRG.18505.1,blat.proc3825172.chain_3106,blat.proc3825172.chain_3109,blat.proc3825172.chain_3110	4
scaffold_9	retained_exon	7794215	7794223	+	asmbl_54134,asmbl_54135,asmbl_54138,asmbl_54140	none	blat.proc3825170.chain_70,blat.proc3825170.chain_72,blat.proc3825170.chain_74,blat.proc3825170.chain_75,blat.proc3825170.chain_77	5	STRG.11230.1,blat.proc3825170.chain_71	2
scaffold_6	ends_in_intron	12999206	12999206	-	asmbl_48866,asmbl_48867	none	STRG.8068.6,blat.proc3825152.chain_493	2	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,blat.proc3825152.chain_488,blat.proc3825152.chain_492,blat.proc3825152.chain_495	7
scaffold_22	alternate_exon	6950926	6951000	+	asmbl_30143	none	STRG.25014.2,blat.proc3825176.chain_2140	2	STRG.25014.1,blat.proc3825176.chain_2139	2
scaffold_15	retained_intron	12621910	12622004	+	asmbl_15587	none	STRG.18717.2,Trinity_GG_27593_c1_g1_i5,blat.proc3825172.chain_3370	3	blat.proc3825172.chain_3368	1
scaffold_1	alt_donor	9109476	9109477	+	asmbl_1953	none	STRG.604.1,blat.proc3825164.chain_759,blat.proc3825164.chain_760	3	STRG.604.2	1
scaffold_21	retained_intron	5170787	5170985	-	asmbl_27626	none	blat.proc3825160.chain_1240	1	STRG.24060.1,blat.proc3825160.chain_1237,blat.proc3825160.chain_1238,blat.proc3825160.chain_1239,blat.proc3825160.chain_1241,blat.proc3825160.chain_1242	6
scaffold_7	alternate_exon	1447349	1447618	-	asmbl_50736	none	STRG.8648.2	1	Trinity_GG_4938_c4_g1_i1,blat.proc3825152.chain_1136	2
scaffold_15	alt_acceptor	16302388	16302389	-	asmbl_14827	none	STRG.18985.2,blat.proc3825158.chain_79	2	STRG.18985.1,blat.proc3825158.chain_80	2
scaffold_15	alt_donor	6197268	6197269	+	asmbl_15247,asmbl_15248	none	STRG.18283.2,STRG.18283.4	2	STRG.18283.1,STRG.18283.5	2
scaffold_11	starts_in_intron	6254551	6254551	+	asmbl_5619	none	STRG.13692.4,Trinity_GG_24860_c0_g1_i7,blat.proc3825170.chain_2241	3	STRG.13692.1,STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237,blat.proc3825170.chain_2239,blat.proc3825170.chain_2242	6
scaffold_22	starts_in_intron	593807	593807	+	asmbl_29869	none	Trinity_GG_30938_c0_g1_i1,blat.proc3825176.chain_1771	2	STRG.24712.1,Trinity_GG_30938_c0_g1_i3,Trinity_GG_30938_c0_g1_i4,blat.proc3825176.chain_1772,blat.proc3825176.chain_1773	5
scaffold_5	starts_in_intron	18787620	18787620	+	asmbl_46286	none	Trinity_GG_21158_c0_g1_i1,blat.proc3825166.chain_3212	2	STRG.7002.1,STRG.7002.2,Trinity_GG_21158_c0_g1_i2,Trinity_GG_21158_c0_g1_i3,blat.proc3825166.chain_3210,blat.proc3825166.chain_3211	6
scaffold_12	retained_intron	14256759	14257074	+	asmbl_8076	none	STRG.15262.2,blat.proc3825170.chain_3697	2	STRG.15262.3	1
scaffold_21	alt_donor	5490740	5490741	-	asmbl_27660	none	STRG.24081.1,blat.proc3825160.chain_1246,blat.proc3825160.chain_1247	3	STRG.24081.2	1
scaffold_6	retained_exon	18660363	18660383	+	asmbl_47835	none	blat.proc3825168.chain_1035	1	STRG.8548.1,blat.proc3825168.chain_1034,blat.proc3825168.chain_1037	3
scaffold_9	alt_donor	376861	376862	+	asmbl_53758	none	STRG.10774.1	1	Trinity_GG_23285_c0_g1_i1	1
scaffold_18	alt_donor	8436152	8436153	-	asmbl_20011,asmbl_20012	none	STRG.21523.1,STRG.21523.2,Trinity_GG_12033_c0_g1_i2,blat.proc3825158.chain_2422,blat.proc3825158.chain_2423	5	STRG.21523.3	1
scaffold_27	retained_exon	3920227	3920466	-	asmbl_36938	none	STRG.28857.1,blat.proc3825162.chain_2104	2	STRG.28857.2	1
scaffold_8	alternate_exon	11919412	11920348	-	asmbl_52174	none	STRG.10389.1	1	STRG.10389.2	1
scaffold_24	ends_in_intron	5940275	5940275	+	asmbl_32256	none	blat.proc3825176.chain_3668	1	STRG.26675.1,STRG.26675.2,Trinity_GG_32084_c0_g1_i2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3665,blat.proc3825176.chain_3666,blat.proc3825176.chain_3667,blat.proc3825176.chain_3669,blat.proc3825176.chain_3670,blat.proc3825176.chain_3671,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680,blat.proc3825176.chain_3681	21
scaffold_14	alternate_exon	15357909	15358036	-	asmbl_13719	none	STRG.17774.2	1	STRG.17774.1,blat.proc3825156.chain_2628	2
scaffold_9	ends_in_intron	4199448	4199448	+	asmbl_53939	none	STRG.11022.2	1	STRG.11022.1,blat.proc3825168.chain_3532,blat.proc3825168.chain_3533	3
scaffold_24	retained_exon	7594330	7594888	-	asmbl_33034	none	STRG.26799.1	1	STRG.26799.2	1
scaffold_2	starts_in_intron	15300331	15300331	+	asmbl_25027	none	STRG.2479.3,blat.proc3825164.chain_2748	2	STRG.2479.1,STRG.2479.2,blat.proc3825164.chain_2747	3
scaffold_23	retained_intron	2197978	2198128	-	asmbl_30706	none	Trinity_GG_14344_c0_g1_i1,blat.proc3825160.chain_2811	2	STRG.25691.1,STRG.25691.3,Trinity_GG_14344_c0_g1_i2,blat.proc3825160.chain_2812	4
scaffold_4	alt_donor	4425808	4425809	-	asmbl_42512,asmbl_42513,asmbl_42515	none	STRG.4343.1,STRG.4343.2,blat.proc3825150.chain_580,blat.proc3825150.chain_581	4	STRG.4343.3	1
scaffold_5	alt_acceptor	9081567	9081568	+	asmbl_45605	none	STRG.6247.2	1	STRG.6247.1,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	5
scaffold_1	spliced_intron	854980	855087	+	asmbl_1427,asmbl_1428,asmbl_1429,asmbl_1430	none	STRG.43.1,STRG.43.3,STRG.43.4,Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142	5	STRG.43.2,Trinity_GG_17353_c0_g1_i1,blat.proc3825164.chain_147	3
scaffold_24	alternate_exon	10480379	10482257	+	asmbl_32565	none	STRG.27018.2,Trinity_GG_32229_c4_g1_i1,blat.proc3825178.chain_208	3	STRG.27018.4	1
scaffold_21	spliced_intron	5594719	5594820	-	asmbl_27677	none	STRG.24091.1,blat.proc3825160.chain_1252	2	Trinity_GG_13438_c0_g1_i2,blat.proc3825160.chain_1253	2
scaffold_8	alt_acceptor	9870744	9870745	+	asmbl_53123	none	STRG.10233.5	1	STRG.10233.2,STRG.10233.6,blat.proc3825168.chain_2815,blat.proc3825168.chain_2816,blat.proc3825168.chain_2817,blat.proc3825168.chain_2818,blat.proc3825168.chain_2819,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	9
scaffold_19	alt_donor	13192827	13192828	-	asmbl_22622	none	blat.proc3825158.chain_3434	1	STRG.22653.1,Trinity_GG_12588_c1_g1_i6,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3431,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3436	8
scaffold_1	retained_intron	11769504	11769614	+	asmbl_2149	none	blat.proc3825164.chain_983	1	STRG.802.1,STRG.802.2,STRG.802.3,blat.proc3825164.chain_982	4
scaffold_4	retained_intron	12380946	12380988	-	asmbl_42909,asmbl_42910	none	STRG.4873.1,Trinity_GG_2716_c0_g1_i2,blat.proc3825150.chain_1058,blat.proc3825150.chain_1059	4	STRG.4873.2	1
scaffold_21	skipped_exon	5518491	5519924	-	asmbl_27662	none	STRG.24083.3	1	STRG.24083.1	1
scaffold_5	alt_donor	6933262	6933263	+	asmbl_45465	none	blat.proc3825166.chain_2322	1	STRG.6107.1,blat.proc3825166.chain_2320	2
scaffold_23	retained_intron	10938169	10938227	-	asmbl_31176	none	Trinity_GG_14694_c0_g1_i2,Trinity_GG_14694_c0_g1_i3,Trinity_GG_14694_c0_g1_i4	3	blat.proc3825160.chain_3413,blat.proc3825160.chain_3414	2
scaffold_8	alt_donor	18248547	18248548	-	asmbl_52531	none	STRG.10728.1	1	STRG.10728.2,STRG.10728.3,STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3016,blat.proc3825152.chain_3018,blat.proc3825152.chain_3019	7
scaffold_17	spliced_intron	8317665	8317809	+	asmbl_18965,asmbl_18967,asmbl_18968,asmbl_18969,asmbl_18971,asmbl_18972	none	STRG.20456.3,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1203	7	STRG.20456.1,STRG.20456.2,blat.proc3825174.chain_1202,blat.proc3825174.chain_1205,blat.proc3825174.chain_1206	5
scaffold_20	starts_in_intron	11744525	11744525	-	asmbl_26194	none	blat.proc3825160.chain_782	1	STRG.23685.1,blat.proc3825160.chain_780	2
scaffold_22	alt_acceptor	3792612	3792613	-	asmbl_29186,asmbl_29187,asmbl_29189	none	STRG.24812.1,STRG.24812.2,blat.proc3825160.chain_1934,blat.proc3825160.chain_1935	4	STRG.24812.3	1
scaffold_5	retained_exon	13235395	13235505	+	asmbl_45864	none	STRG.6565.3	1	STRG.6565.1,STRG.6565.2,blat.proc3825166.chain_2741,blat.proc3825166.chain_2743	4
scaffold_1	alt_donor	14200941	14200942	+	asmbl_2344,asmbl_2348	none	STRG.1008.1,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1192	5	STRG.1008.2,blat.proc3825164.chain_1190	2
scaffold_6	alt_acceptor	11459	11460	-	asmbl_48014	none	STRG.7057.1	1	blat.proc3825150.chain_3174	1
scaffold_13	starts_in_intron	6619516	6619516	-	asmbl_9809	none	blat.proc3825156.chain_865	1	STRG.15958.1	1
scaffold_2	skipped_exon	14751245	14752836	+	asmbl_24983	none	STRG.2476.2,blat.proc3825164.chain_2733	2	STRG.2476.1,blat.proc3825164.chain_2734	2
scaffold_28	alternate_exon	4205205	4210879	+	asmbl_37520	none	STRG.29616.1,Trinity_GG_33739_c0_g1_i6,blat.proc3825178.chain_2809,blat.proc3825178.chain_2810	4	STRG.29616.2	1
scaffold_3	alt_acceptor	13544257	13544258	-	asmbl_39272	none	STRG.3703.2,blat.proc3825148.chain_3550	2	STRG.3703.1,blat.proc3825148.chain_3551	2
scaffold_11	starts_in_intron	850515	850515	+	asmbl_5304	none	Trinity_GG_24616_c0_g1_i3,blat.proc3825170.chain_1842	2	STRG.13283.1,Trinity_GG_24616_c0_g1_i5,blat.proc3825170.chain_1840,blat.proc3825170.chain_1841	4
scaffold_10	starts_in_intron	3731899	3731899	+	asmbl_3067	none	blat.proc3825170.chain_913	1	STRG.12202.1,STRG.12202.2,blat.proc3825170.chain_914,blat.proc3825170.chain_915	4
scaffold_10	starts_in_intron	3922471	3922471	+	asmbl_3089	none	Trinity_GG_24092_c1_g1_i3,blat.proc3825170.chain_929	2	blat.proc3825170.chain_927,blat.proc3825170.chain_928	2
scaffold_22	ends_in_intron	7755269	7755269	+	asmbl_30216	none	blat.proc3825176.chain_2249	1	STRG.25116.1,blat.proc3825176.chain_2248	2
scaffold_15	spliced_intron	15907550	15907932	-	asmbl_14807,asmbl_14809,asmbl_14812,asmbl_14813	none	STRG.18975.1,STRG.18975.2,blat.proc3825158.chain_64,blat.proc3825158.chain_65,blat.proc3825158.chain_66	5	blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_67	3
scaffold_1	retained_intron	857694	857888	-	asmbl_27	none	STRG.44.2,blat.proc3825148.chain_43	2	STRG.44.1,blat.proc3825148.chain_41,blat.proc3825148.chain_42	3
scaffold_1	alt_acceptor	11763230	11763231	+	asmbl_2146,asmbl_2149	none	STRG.802.1,blat.proc3825164.chain_982,blat.proc3825164.chain_983	3	STRG.802.2,STRG.802.3	2
scaffold_1	retained_exon	22134525	22134589	+	asmbl_2684	none	STRG.1487.1	1	STRG.1487.2	1
scaffold_1	alt_acceptor	1616527	1616528	+	asmbl_1501	none	Trinity_GG_17360_c0_g1_i4,blat.proc3825164.chain_163	2	STRG.113.1,STRG.113.4,Trinity_GG_17360_c0_g1_i2,Trinity_GG_17360_c0_g1_i5,blat.proc3825164.chain_165,blat.proc3825164.chain_167	6
scaffold_10	alt_acceptor	11918877	11918878	-	asmbl_4803	none	STRG.12830.2	1	STRG.12830.1,blat.proc3825154.chain_1433,blat.proc3825154.chain_1434	3
scaffold_22	ends_in_intron	7944570	7944570	+	asmbl_30241	none	blat.proc3825176.chain_2290	1	STRG.25149.1,blat.proc3825176.chain_2291	2
scaffold_13	alt_donor	274732	274733	+	asmbl_10467	none	STRG.15434.3,blat.proc3825172.chain_196	2	STRG.15434.1,blat.proc3825172.chain_198	2
scaffold_6	alt_acceptor	15697267	15697268	+	asmbl_47668	none	STRG.8311.2,blat.proc3825168.chain_737	2	STRG.8311.1,blat.proc3825168.chain_736	2
scaffold_5	alt_acceptor	13023172	13023173	+	asmbl_45840	none	STRG.6532.3	1	STRG.6532.1,blat.proc3825166.chain_2716	2
scaffold_9	starts_in_intron	5669149	5669149	+	asmbl_54066	none	blat.proc3825168.chain_3688	1	STRG.11140.1,STRG.11140.2,blat.proc3825168.chain_3686,blat.proc3825168.chain_3687,blat.proc3825168.chain_3689	5
scaffold_7	spliced_intron	11147047	11147136	+	asmbl_50150,asmbl_50151,asmbl_50152	none	STRG.9262.1,blat.proc3825168.chain_1785,blat.proc3825168.chain_1789,blat.proc3825168.chain_1790,blat.proc3825168.chain_1791	5	STRG.9262.2,blat.proc3825168.chain_1784,blat.proc3825168.chain_1788	3
scaffold_17	starts_in_intron	653837	653837	-	asmbl_17638	none	Trinity_GG_11177_c0_g1_i1,blat.proc3825158.chain_966	2	STRG.19915.1,Trinity_GG_11177_c0_g1_i2,blat.proc3825158.chain_964,blat.proc3825158.chain_965	4
scaffold_9	ends_in_intron	9354552	9354552	-	asmbl_55158	none	STRG.11290.2,Trinity_GG_6204_c0_g1_i1,blat.proc3825152.chain_3436	3	STRG.11290.1,blat.proc3825152.chain_3437	2
scaffold_2	retained_intron	8300696	8300832	+	asmbl_24630	none	blat.proc3825164.chain_2310	1	STRG.2114.1,STRG.2114.2,STRG.2114.3,blat.proc3825164.chain_2306,blat.proc3825164.chain_2307,blat.proc3825164.chain_2311	6
scaffold_5	starts_in_intron	19004306	19004306	-	asmbl_44883	none	Trinity_GG_3917_c0_g1_i1	1	STRG.7017.1,blat.proc3825150.chain_3146	2
scaffold_10	alternate_exon	3758322	3759631	-	asmbl_4221	none	STRG.12208.2	1	STRG.12208.4	1
scaffold_810	spliced_intron	2605	2957	+	asmbl_53679	none	STRG.30479.1	1	blat.proc3825178.chain_3684,blat.proc3825178.chain_3686	2
scaffold_16	alt_acceptor	4910195	4910196	-	asmbl_17084	none	STRG.19268.3	1	STRG.19268.1,STRG.19268.2,Trinity_GG_10809_c0_g1_i3,blat.proc3825158.chain_384	4
scaffold_11	retained_intron	9830658	9831678	+	asmbl_5906	none	STRG.14008.1,Trinity_GG_25038_c0_g1_i6,blat.proc3825170.chain_2557,blat.proc3825170.chain_2560	4	STRG.14008.3,STRG.14008.4,blat.proc3825170.chain_2565	3
scaffold_13	alt_acceptor	3820309	3820310	-	asmbl_9588	none	STRG.15711.3,blat.proc3825156.chain_573	2	STRG.15711.2	1
scaffold_7	alternate_exon	1227349	1233709	+	asmbl_49594,asmbl_49602,asmbl_49604,asmbl_49605,asmbl_49606	none	STRG.8637.1,STRG.8637.2,STRG.8637.5,STRG.8637.6,STRG.8637.7	5	blat.proc3825168.chain_1068	1
scaffold_13	alt_acceptor	10239640	10239641	-	asmbl_10053,asmbl_10054	none	STRG.16258.1,STRG.16258.3,blat.proc3825156.chain_1115,blat.proc3825156.chain_1116	4	STRG.16258.4	1
scaffold_27	ends_in_intron	6195472	6195472	+	asmbl_36385	none	STRG.29014.2	1	STRG.29014.3	1
scaffold_15	skipped_exon	3898968	3900665	+	asmbl_15112	none	STRG.18143.1	1	STRG.18143.2,Trinity_GG_27258_c0_g1_i1,blat.proc3825172.chain_2799	3
scaffold_17	ends_in_intron	14626966	14626966	-	asmbl_18438,asmbl_18439	none	blat.proc3825158.chain_1899,blat.proc3825158.chain_1902	2	STRG.20931.1,STRG.20931.4	2
scaffold_14	retained_exon	3173132	3173282	-	asmbl_12997	none	STRG.16909.2,blat.proc3825156.chain_1763	2	STRG.16909.1,blat.proc3825156.chain_1761	2
scaffold_1	retained_intron	3270179	3270358	-	asmbl_141,asmbl_145	none	STRG.204.2,blat.proc3825148.chain_202	2	STRG.204.4	1
scaffold_21	ends_in_intron	3172779	3172779	-	asmbl_27521	none	Trinity_GG_13346_c0_g1_i1,blat.proc3825160.chain_1077	2	STRG.23960.1	1
scaffold_5	alt_donor	3772939	3772940	+	asmbl_45237,asmbl_45239	none	STRG.5842.3,blat.proc3825166.chain_2079	2	STRG.5842.2,blat.proc3825166.chain_2078	2
scaffold_5	spliced_intron	13022943	13023169	+	asmbl_45838	none	STRG.6532.1,blat.proc3825166.chain_2716	2	STRG.6532.2,blat.proc3825166.chain_2715	2
scaffold_1	retained_exon	3146428	3146530	-	asmbl_137	none	STRG.197.1,blat.proc3825148.chain_173	2	STRG.197.2,blat.proc3825148.chain_174	2
scaffold_20	spliced_intron	11948483	11948577	-	asmbl_26208	none	blat.proc3825160.chain_681	1	STRG.23700.2,STRG.23700.3,blat.proc3825160.chain_680	3
scaffold_4	retained_intron	6283224	6283378	-	asmbl_42675	none	blat.proc3825150.chain_773	1	STRG.4498.1,STRG.4498.2,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778,blat.proc3825150.chain_780	12
scaffold_26	spliced_intron	5953595	5953639	-	asmbl_35656	none	STRG.28307.2	1	STRG.28307.1,blat.proc3825162.chain_1520,blat.proc3825162.chain_1521	3
scaffold_6	ends_in_intron	2697873	2697873	-	asmbl_48150	none	STRG.7265.2	1	STRG.7265.1,blat.proc3825150.chain_3385	2
scaffold_7	retained_intron	8518033	8520452	+	asmbl_50011	none	STRG.9083.1,blat.proc3825168.chain_1566	2	STRG.9083.2	1
scaffold_19	retained_exon	2780749	2780818	+	asmbl_21276,asmbl_21280	none	STRG.21962.1,blat.proc3825174.chain_2998	2	STRG.21962.2	1
scaffold_12	alternate_exon	9231328	9231654	-	asmbl_8663,asmbl_8664,asmbl_8666,asmbl_8667	none	STRG.14939.1,STRG.14939.3,blat.proc3825154.chain_3447,blat.proc3825154.chain_3450	4	STRG.14939.5,blat.proc3825154.chain_3451,blat.proc3825154.chain_3454,blat.proc3825154.chain_3456	4
scaffold_25	alternate_exon	3687916	3688060	+	asmbl_33453,asmbl_33454	none	STRG.27315.3,blat.proc3825178.chain_416,blat.proc3825178.chain_417	3	STRG.27315.1	1
scaffold_14	starts_in_intron	3550328	3550328	-	asmbl_13021	none	blat.proc3825156.chain_1728	1	STRG.16946.1,STRG.16946.2,STRG.16946.3,blat.proc3825156.chain_1729,blat.proc3825156.chain_1730	5
scaffold_1	alternate_exon	12489214	12489338	+	asmbl_2229	none	STRG.862.3	1	STRG.862.1	1
scaffold_2	alt_donor	14232093	14232094	-	asmbl_23590	none	STRG.2421.1	1	blat.proc3825148.chain_2420	1
scaffold_6	alt_donor	3326155	3326156	+	asmbl_46833	none	STRG.7340.3	1	STRG.7340.1,STRG.7340.2,blat.proc3825166.chain_3445,blat.proc3825166.chain_3446	4
scaffold_21	spliced_intron	3112262	3112397	-	asmbl_27506,asmbl_27509	none	STRG.23940.1,blat.proc3825160.chain_1062,blat.proc3825160.chain_1064	3	blat.proc3825160.chain_1061,blat.proc3825160.chain_1063	2
scaffold_13	skipped_exon	2375080	2376219	-	asmbl_9459	none	STRG.15553.4	1	STRG.15553.1,STRG.15553.2,STRG.15553.3,blat.proc3825156.chain_448,blat.proc3825156.chain_449,blat.proc3825156.chain_450	6
scaffold_4	retained_exon	7154530	7154765	+	asmbl_41465,asmbl_41468,asmbl_41470	none	STRG.4559.1,STRG.4559.2,blat.proc3825166.chain_1027	3	STRG.4559.3,STRG.4559.4,STRG.4559.5,blat.proc3825166.chain_1028	4
scaffold_12	retained_intron	9071332	9071490	+	asmbl_7852	none	Trinity_GG_25570_c0_g1_i4,blat.proc3825170.chain_3505	2	STRG.14915.1,Trinity_GG_25570_c0_g1_i2,blat.proc3825170.chain_3504	3
scaffold_6	skipped_exon	12550525	12553416	-	asmbl_48827,asmbl_48829	none	STRG.8017.3,blat.proc3825152.chain_423	2	STRG.8017.1,STRG.8017.2,blat.proc3825152.chain_421	3
scaffold_22	alternate_exon	7880895	7884808	-	asmbl_29429,asmbl_29430	none	blat.proc3825160.chain_2295,blat.proc3825160.chain_2297,blat.proc3825160.chain_2298	3	blat.proc3825160.chain_2296	1
scaffold_24	alternate_exon	6725096	6726452	-	asmbl_32970	none	blat.proc3825162.chain_95	1	blat.proc3825162.chain_96	1
scaffold_15	spliced_intron	15435691	15435799	-	asmbl_14783	none	STRG.18932.3	1	STRG.18932.1,STRG.18932.2,Trinity_GG_10599_c0_g1_i5,blat.proc3825156.chain_3727,blat.proc3825156.chain_3728,blat.proc3825156.chain_3729,blat.proc3825156.chain_3731,blat.proc3825156.chain_3732,blat.proc3825156.chain_3733	9
scaffold_3	alternate_exon	6247494	6249110	-	asmbl_38936	none	blat.proc3825148.chain_3138	1	STRG.3271.1,STRG.3271.4,blat.proc3825148.chain_3136,blat.proc3825148.chain_3140	4
scaffold_21	retained_intron	7009972	7010079	-	asmbl_27778	none	STRG.24233.2	1	STRG.24233.1,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393	5
scaffold_21	skipped_exon	3162883	3165288	+	asmbl_28456,asmbl_28457,asmbl_28464,asmbl_28468,asmbl_28469,asmbl_28472	none	STRG.23959.1,STRG.23959.2,STRG.23959.5,blat.proc3825176.chain_1132,blat.proc3825176.chain_1137,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	7	STRG.23959.3,STRG.23959.4,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1139	5
scaffold_5	spliced_intron	13881229	13881333	+	asmbl_45886,asmbl_45887	none	STRG.6616.1,STRG.6616.2,blat.proc3825166.chain_2762,blat.proc3825166.chain_2763	4	blat.proc3825166.chain_2764	1
scaffold_13	alt_acceptor	5382015	5382016	+	asmbl_10843	none	STRG.15834.1,blat.proc3825172.chain_565	2	STRG.15834.2	1
scaffold_5	starts_in_intron	13689035	13689035	-	asmbl_44553	none	blat.proc3825150.chain_2769	1	STRG.6589.1,blat.proc3825150.chain_2768	2
scaffold_22	alt_acceptor	7345679	7345680	+	asmbl_30174	none	STRG.25068.1,Trinity_GG_31184_c1_g1_i2,blat.proc3825176.chain_2192	3	STRG.25068.2	1
scaffold_25	alternate_exon	3685591	3687106	+	asmbl_33452	none	STRG.27315.1,blat.proc3825178.chain_418	2	STRG.27315.3,blat.proc3825178.chain_416,blat.proc3825178.chain_417	3
scaffold_4	retained_exon	19525666	19525696	-	asmbl_43444	none	STRG.5538.1,blat.proc3825150.chain_1642	2	blat.proc3825150.chain_1643,blat.proc3825150.chain_1644	2
scaffold_22	retained_exon	8237055	8237190	-	asmbl_29466,asmbl_29467	none	STRG.25182.1,STRG.25182.2,blat.proc3825160.chain_2327,blat.proc3825160.chain_2328	4	STRG.25182.3	1
scaffold_3	retained_intron	7908386	7908760	-	asmbl_38996	none	STRG.3373.2,blat.proc3825148.chain_3179	2	STRG.3373.1,blat.proc3825148.chain_3180	2
scaffold_12	alt_donor	7335092	7335093	+	asmbl_7745	none	STRG.14813.2,blat.proc3825170.chain_3351	2	STRG.14813.1,STRG.14813.3,blat.proc3825170.chain_3352	3
scaffold_26	ends_in_intron	9029745	9029745	+	asmbl_35197	none	blat.proc3825178.chain_1571	1	STRG.28467.1,blat.proc3825178.chain_1569	2
scaffold_2	alt_donor	16097660	16097661	-	asmbl_23674	none	STRG.2561.2	1	STRG.2561.1,blat.proc3825148.chain_2446	2
scaffold_2	spliced_intron	8063944	8064058	+	asmbl_24609	none	STRG.2102.1,blat.proc3825164.chain_2261	2	Trinity_GG_18492_c0_g1_i1,blat.proc3825164.chain_2260	2
scaffold_13	retained_intron	6619004	6619115	-	asmbl_9809	none	Trinity_GG_8985_c0_g1_i2,blat.proc3825156.chain_865	2	STRG.15958.2,Trinity_GG_8985_c0_g1_i3,blat.proc3825156.chain_864	3
scaffold_4	skipped_exon	13076162	13076345	+	asmbl_41779	none	STRG.4947.5	1	STRG.4947.1,STRG.4947.2,STRG.4947.3,blat.proc3825166.chain_1379,blat.proc3825166.chain_1381	5
scaffold_11	alt_acceptor	7886971	7886972	+	asmbl_5690,asmbl_5691	none	STRG.13792.3,Trinity_GG_24911_c0_g1_i4,blat.proc3825170.chain_2336	3	STRG.13792.1,STRG.13792.2,Trinity_GG_24911_c0_g1_i1,Trinity_GG_24911_c0_g1_i3,blat.proc3825170.chain_2334,blat.proc3825170.chain_2335	6
scaffold_8	retained_intron	13138179	13138853	-	asmbl_52268	none	blat.proc3825152.chain_2750	1	STRG.10488.1,STRG.10488.2,blat.proc3825152.chain_2748,blat.proc3825152.chain_2749,blat.proc3825152.chain_2751	5
scaffold_12	alt_acceptor	7430855	7430856	+	asmbl_7759	none	STRG.14827.2	1	STRG.14827.1,Trinity_GG_25502_c0_g1_i1,Trinity_GG_25502_c0_g1_i2,blat.proc3825170.chain_3366,blat.proc3825170.chain_3367	5
scaffold_16	spliced_intron	11607412	11607538	+	asmbl_16589	none	STRG.19683.2	1	STRG.19683.1,blat.proc3825174.chain_565	2
scaffold_18	skipped_exon	7228357	7231127	+	asmbl_20725	none	STRG.21429.3,blat.proc3825174.chain_2442	2	STRG.21429.1,STRG.21429.2,blat.proc3825174.chain_2443,blat.proc3825174.chain_2444,blat.proc3825174.chain_2445	5
scaffold_7	alt_donor	5837176	5837177	+	asmbl_49824	none	STRG.8891.2	1	STRG.8891.1	1
scaffold_3	spliced_intron	7972688	7972770	+	asmbl_40188	none	STRG.3384.1,blat.proc3825164.chain_3591	2	blat.proc3825164.chain_3590	1
scaffold_17	retained_intron	3990235	3990481	-	asmbl_17836,asmbl_17838	none	STRG.20158.2,STRG.20158.4	2	STRG.20158.3,blat.proc3825158.chain_1211	2
scaffold_27	starts_in_intron	2997744	2997744	+	asmbl_36157,asmbl_36158	none	blat.proc3825178.chain_1902,blat.proc3825178.chain_1903	2	STRG.28786.1,STRG.28786.2,STRG.28786.3,blat.proc3825178.chain_1904,blat.proc3825178.chain_1905,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	7
scaffold_2	alt_acceptor	8059384	8059385	-	asmbl_23309	none	STRG.2093.2,blat.proc3825148.chain_2111	2	STRG.2093.3	1
scaffold_19	starts_in_intron	13020576	13020576	+	asmbl_21847	none	Trinity_GG_29827_c0_g1_i2,blat.proc3825174.chain_3667	2	STRG.22622.1	1
scaffold_18	alt_donor	3634663	3634664	+	asmbl_20465,asmbl_20466,asmbl_20468	none	STRG.21184.1,STRG.21184.3,STRG.21184.4,blat.proc3825174.chain_2121,blat.proc3825174.chain_2123	5	STRG.21184.2,blat.proc3825174.chain_2122	2
scaffold_8	ends_in_intron	17683851	17683851	-	asmbl_52484	none	STRG.10687.3,Trinity_GG_5890_c0_g1_i2,blat.proc3825152.chain_2837	3	STRG.10687.1,Trinity_GG_5890_c0_g1_i6,blat.proc3825152.chain_2839	3
scaffold_17	alt_acceptor	13084690	13084691	+	asmbl_19311,asmbl_19314	none	STRG.20804.1,blat.proc3825174.chain_1721,blat.proc3825174.chain_1726,blat.proc3825174.chain_1727	4	blat.proc3825174.chain_1718,blat.proc3825174.chain_1722,blat.proc3825174.chain_1725	3
scaffold_15	spliced_intron	676925	677039	-	asmbl_13938	none	STRG.17932.1,blat.proc3825156.chain_2721	2	blat.proc3825156.chain_2722	1
scaffold_19	starts_in_intron	8233462	8233462	+	asmbl_21503	none	Trinity_GG_29610_c0_g1_i3,blat.proc3825174.chain_3264	2	STRG.22282.1,Trinity_GG_29610_c0_g1_i1,blat.proc3825174.chain_3265,blat.proc3825174.chain_3266	4
scaffold_22	alternate_exon	4574699	4577206	+	asmbl_30030	none	STRG.24887.1	1	blat.proc3825176.chain_2003	1
scaffold_6	ends_in_intron	13228503	13228503	+	asmbl_47510	none	blat.proc3825168.chain_569	1	STRG.8084.1,STRG.8084.2,STRG.8084.3,STRG.8084.4,STRG.8084.5,STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_573,blat.proc3825168.chain_575,blat.proc3825168.chain_576,blat.proc3825168.chain_577	13
scaffold_5	skipped_exon	9648398	9650888	+	asmbl_45625	none	STRG.6281.1,blat.proc3825166.chain_2429	2	STRG.6281.2,blat.proc3825166.chain_2430	2
scaffold_17	starts_in_intron	2635447	2635447	+	asmbl_18673	none	Trinity_GG_28292_c0_g1_i2,blat.proc3825174.chain_930	2	STRG.20060.3,STRG.20060.4,Trinity_GG_28292_c0_g1_i3,blat.proc3825174.chain_926,blat.proc3825174.chain_928	5
scaffold_4	ends_in_intron	8264264	8264264	+	asmbl_41544	none	blat.proc3825166.chain_1106	1	STRG.4654.2,blat.proc3825166.chain_1107	2
scaffold_9	spliced_intron	8395093	8395319	+	asmbl_54171,asmbl_54173	none	STRG.11261.2,blat.proc3825170.chain_62	2	STRG.11261.1,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_61	4
scaffold_13	alt_donor	12243648	12243649	-	asmbl_10125	none	STRG.16353.3,blat.proc3825156.chain_1218	2	STRG.16353.1,STRG.16353.2,blat.proc3825156.chain_1216,blat.proc3825156.chain_1217	4
scaffold_8	spliced_intron	11278090	11278313	-	asmbl_52145,asmbl_52146,asmbl_52147,asmbl_52148	none	STRG.10347.1,STRG.10347.2,STRG.10347.3,blat.proc3825152.chain_2593,blat.proc3825152.chain_2594,blat.proc3825152.chain_2596	6	Trinity_GG_5759_c0_g1_i4,blat.proc3825152.chain_2595	2
scaffold_9	starts_in_intron	7795259	7795259	+	asmbl_54141	none	blat.proc3825170.chain_76	1	STRG.11230.1,blat.proc3825170.chain_70,blat.proc3825170.chain_71,blat.proc3825170.chain_72,blat.proc3825170.chain_74,blat.proc3825170.chain_75,blat.proc3825170.chain_77	7
scaffold_4	alt_acceptor	6602288	6602289	+	asmbl_41416,asmbl_41418	none	STRG.4521.2,blat.proc3825166.chain_971	2	STRG.4521.1,blat.proc3825166.chain_972,blat.proc3825166.chain_973	3
scaffold_21	retained_intron	11346303	11346361	-	asmbl_28122	none	STRG.24614.3	1	STRG.24614.1,STRG.24614.2,STRG.24614.4	3
scaffold_1	starts_in_intron	1050627	1050627	+	asmbl_1455	none	Trinity_GG_17352_c0_g1_i1,blat.proc3825164.chain_141	2	STRG.60.1	1
scaffold_7	alt_acceptor	8288330	8288331	-	asmbl_50990	none	Trinity_GG_5113_c0_g1_i2,blat.proc3825152.chain_1448	2	STRG.9063.1,STRG.9063.2,blat.proc3825152.chain_1449	3
scaffold_9	alt_acceptor	17791561	17791562	-	asmbl_55681,asmbl_55682	none	STRG.11865.1,Trinity_GG_6570_c0_g1_i2,Trinity_GG_6570_c0_g1_i3,blat.proc3825154.chain_356,blat.proc3825154.chain_358	5	STRG.11865.2,Trinity_GG_6570_c0_g2_i1,blat.proc3825154.chain_359	3
scaffold_27	alt_acceptor	941587	941588	-	asmbl_36726	none	STRG.28593.2,Trinity_GG_16005_c0_g1_i1,blat.proc3825162.chain_1849	3	STRG.28593.1,Trinity_GG_16005_c0_g1_i2,blat.proc3825162.chain_1848	3
scaffold_643	alt_acceptor	1472	1473	-	asmbl_49490	none	STRG.30415.1	1	STRG.30415.3	1
scaffold_26	retained_exon	2781939	2781953	+	asmbl_34754	none	blat.proc3825178.chain_1016	1	STRG.27969.2	1
scaffold_2	alt_donor	3771198	3771199	+	asmbl_24314	none	STRG.1810.1	1	blat.proc3825164.chain_1957	1
scaffold_1	skipped_exon	4237758	4239798	+	asmbl_1652,asmbl_1653,asmbl_1655	none	STRG.256.3,STRG.256.5,blat.proc3825164.chain_401	3	STRG.256.1,blat.proc3825164.chain_404	2
scaffold_2	alt_acceptor	3771256	3771257	+	asmbl_24314	none	STRG.1810.1	1	blat.proc3825164.chain_1957	1
scaffold_9	ends_in_intron	1696880	1696880	-	asmbl_54835	none	Trinity_GG_6029_c0_g2_i1,blat.proc3825152.chain_3107	2	STRG.10861.1	1
scaffold_1	retained_intron	12410452	12410980	+	asmbl_2212	none	Trinity_GG_17839_c0_g1_i1,blat.proc3825164.chain_1024	2	STRG.855.1,Trinity_GG_17839_c0_g1_i2,blat.proc3825164.chain_1023	3
scaffold_23	alt_acceptor	5619810	5619811	-	asmbl_30927	none	STRG.25937.3,blat.proc3825160.chain_3058	2	STRG.25937.2,blat.proc3825160.chain_3059	2
scaffold_21	alt_acceptor	7318301	7318302	+	asmbl_28722	none	STRG.24254.1,blat.proc3825176.chain_1458	2	STRG.24254.2	1
scaffold_7	starts_in_intron	17811957	17811957	+	asmbl_50503	none	STRG.9630.2,blat.proc3825168.chain_2143	2	STRG.9630.1	1
scaffold_6	alt_acceptor	13176586	13176587	+	asmbl_47479,asmbl_47480	none	STRG.8075.1,STRG.8075.3,blat.proc3825168.chain_555,blat.proc3825168.chain_557	4	STRG.8075.2,blat.proc3825168.chain_556	2
scaffold_1	alt_donor	11173731	11173732	+	asmbl_2082,asmbl_2083	none	STRG.747.3,blat.proc3825164.chain_914	2	STRG.747.4	1
scaffold_28	alt_donor	1705886	1705887	-	asmbl_38009	none	STRG.29367.1,blat.proc3825162.chain_2543	2	STRG.29367.2	1
scaffold_13	spliced_intron	1238835	1239623	+	asmbl_10546,asmbl_10550,asmbl_10551,asmbl_10552,asmbl_10553,asmbl_10556	none	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.6,Trinity_GG_25867_c0_g1_i1,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_308,blat.proc3825172.chain_311,blat.proc3825172.chain_312	11	STRG.15494.5,STRG.15494.7,Trinity_GG_25867_c0_g1_i7,Trinity_GG_25867_c0_g1_i8,Trinity_GG_25867_c2_g1_i1,blat.proc3825172.chain_309,blat.proc3825172.chain_310,blat.proc3825172.chain_315	8
scaffold_10	ends_in_intron	1114440	1114440	+	asmbl_2905	none	Trinity_GG_23978_c0_g1_i1,blat.proc3825170.chain_737	2	STRG.12000.1,Trinity_GG_23978_c0_g1_i2,blat.proc3825170.chain_736	3
scaffold_7	starts_in_intron	12389416	12389416	-	asmbl_51207	none	blat.proc3825152.chain_1657	1	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1661	5
scaffold_20	starts_in_intron	4374527	4374527	+	asmbl_26584	none	Trinity_GG_30071_c0_g1_i3,blat.proc3825176.chain_309	2	STRG.23122.1,STRG.23122.2	2
scaffold_14	retained_intron	11686951	11687213	-	asmbl_13522	none	blat.proc3825156.chain_2314	1	STRG.17516.1,STRG.17516.2,STRG.17516.3,blat.proc3825156.chain_2313,blat.proc3825156.chain_2316	5
scaffold_19	ends_in_intron	5462132	5462132	+	asmbl_21374	none	blat.proc3825174.chain_3162	1	STRG.22117.1,blat.proc3825174.chain_3157,blat.proc3825174.chain_3160	3
scaffold_22	alt_acceptor	10681034	10681035	-	asmbl_29615,asmbl_29616	none	STRG.25415.1,STRG.25415.2,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608	4	blat.proc3825160.chain_2610	1
scaffold_23	retained_intron	10981234	10981331	-	asmbl_31184	none	STRG.26308.3	1	STRG.26308.1,blat.proc3825160.chain_3395	2
scaffold_18	ends_in_intron	4071476	4071476	-	asmbl_19788	none	blat.proc3825158.chain_2168	1	STRG.21204.1	1
scaffold_6	ends_in_intron	12654223	12654223	+	asmbl_47431	none	Trinity_GG_21691_c1_g1_i4,blat.proc3825168.chain_447	2	STRG.8027.1,STRG.8027.2,blat.proc3825168.chain_448,blat.proc3825168.chain_449	4
scaffold_1	alt_acceptor	6817840	6817841	-	asmbl_379	none	blat.proc3825148.chain_461	1	STRG.472.1	1
scaffold_4	starts_in_intron	17538263	17538263	+	asmbl_42053	none	Trinity_GG_20276_c0_g1_i1,blat.proc3825166.chain_1706	2	STRG.5340.1,STRG.5340.2	2
scaffold_1	retained_exon	4567838	4567860	-	asmbl_207	none	STRG.285.3	1	STRG.285.1,STRG.285.2,blat.proc3825148.chain_153	3
scaffold_28	spliced_intron	2810466	2811309	-	asmbl_38088,asmbl_38092	none	STRG.29471.3,blat.proc3825162.chain_2598	2	STRG.29471.2,STRG.29471.4,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	4
scaffold_3	starts_in_intron	14012604	14012604	+	asmbl_40489	none	Trinity_GG_19419_c0_g1_i3,blat.proc3825166.chain_260	2	STRG.3746.1,Trinity_GG_19419_c0_g1_i2,blat.proc3825166.chain_257	3
scaffold_17	retained_exon	2354832	2358219	+	asmbl_18637,asmbl_18643	none	STRG.20030.1,blat.proc3825174.chain_907,blat.proc3825174.chain_909	3	STRG.20030.5	1
scaffold_4	starts_in_intron	16479691	16479691	-	asmbl_43181	none	Trinity_GG_2926_c0_g2_i1	1	STRG.5225.1,STRG.5225.2,STRG.5225.3,blat.proc3825150.chain_1403,blat.proc3825150.chain_1404,blat.proc3825150.chain_1405,blat.proc3825150.chain_1406	7
scaffold_22	alternate_exon	8191321	8191393	-	asmbl_29456	none	STRG.25169.3	1	STRG.25169.1,blat.proc3825160.chain_2321	2
scaffold_27	spliced_intron	3000478	3000572	+	asmbl_36150,asmbl_36155,asmbl_36156,asmbl_36158,asmbl_36159	none	STRG.28786.1,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	6	STRG.28786.2,STRG.28786.3,blat.proc3825178.chain_1901,blat.proc3825178.chain_1906	4
scaffold_21	retained_exon	10329938	10330394	-	asmbl_28037	none	STRG.24501.3	1	STRG.24501.2	1
scaffold_20	alternate_exon	1571288	1571571	+	asmbl_26431	none	STRG.22885.2	1	STRG.22885.1,blat.proc3825176.chain_15	2
scaffold_2	spliced_intron	956724	956897	-	asmbl_22826	none	STRG.1572.1,blat.proc3825148.chain_1533	2	STRG.1572.2,Trinity_GG_850_c0_g1_i2,blat.proc3825148.chain_1534	3
scaffold_1	ends_in_intron	6831193	6831193	-	asmbl_387	none	blat.proc3825148.chain_464	1	STRG.474.1,blat.proc3825148.chain_465	2
scaffold_56	ends_in_intron	14429	14429	+	asmbl_46573	none	STRG.30075.1	1	Trinity_GG_33957_c0_g1_i2,blat.proc3825178.chain_3199	2
scaffold_28	skipped_exon	1434222	1435417	-	asmbl_37989	none	STRG.29342.1,blat.proc3825162.chain_2528	2	STRG.29342.2,STRG.29342.3,blat.proc3825162.chain_2527	3
scaffold_10	spliced_intron	15426722	15426763	+	asmbl_3687	none	STRG.13064.1	1	STRG.13064.3	1
scaffold_6	spliced_intron	8922099	8922181	-	asmbl_48604	none	blat.proc3825152.chain_152	1	STRG.7768.1,Trinity_GG_4392_c0_g1_i2,blat.proc3825152.chain_153	3
scaffold_14	alt_acceptor	13897831	13897832	+	asmbl_12514	none	STRG.17673.4	1	STRG.17673.1,STRG.17673.2,STRG.17673.3,blat.proc3825172.chain_2390,blat.proc3825172.chain_2392	5
scaffold_8	alternate_exon	11272893	11272950	+	asmbl_53210	none	STRG.10346.3,Trinity_GG_23069_c0_g1_i2,blat.proc3825168.chain_2914	3	STRG.10346.1,Trinity_GG_23069_c0_g1_i1,blat.proc3825168.chain_2911	3
scaffold_16	alt_acceptor	4077930	4077931	+	asmbl_16167	none	STRG.19224.2	1	STRG.19224.1,blat.proc3825174.chain_115,blat.proc3825174.chain_116	3
scaffold_25	spliced_intron	3709933	3710091	+	asmbl_33456	none	STRG.27320.2,Trinity_GG_32370_c0_g1_i2,blat.proc3825178.chain_412	3	STRG.27320.1,Trinity_GG_32370_c0_g1_i1,blat.proc3825178.chain_411,blat.proc3825178.chain_413	4
scaffold_13	retained_intron	7265980	7266076	-	asmbl_9869	none	blat.proc3825156.chain_942	1	STRG.16029.1,blat.proc3825156.chain_939,blat.proc3825156.chain_940,blat.proc3825156.chain_941,blat.proc3825156.chain_943	5
scaffold_8	retained_intron	16274198	16274331	-	asmbl_52382	none	Trinity_GG_5880_c0_g1_i3,blat.proc3825152.chain_2815	2	STRG.10619.1,STRG.10619.2,blat.proc3825152.chain_2812,blat.proc3825152.chain_2813,blat.proc3825152.chain_2814	5
scaffold_1	skipped_exon	13098218	13100568	-	asmbl_792	none	STRG.947.2,blat.proc3825148.chain_866	2	blat.proc3825148.chain_867	1
scaffold_4	alt_donor	19448557	19448558	+	asmbl_42147	none	STRG.5532.1,blat.proc3825166.chain_1819	2	STRG.5532.2	1
scaffold_23	retained_intron	7686045	7687381	+	asmbl_31717,asmbl_31719	none	STRG.26090.4,Trinity_GG_31727_c0_g1_i6,blat.proc3825176.chain_3055	3	STRG.26090.2,STRG.26090.6,Trinity_GG_31727_c0_g1_i1,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3057	6
scaffold_6	skipped_exon	18916513	18917076	-	asmbl_49289	none	STRG.8561.1,blat.proc3825152.chain_1002,blat.proc3825152.chain_1003	3	STRG.8561.2,STRG.8561.3	2
scaffold_11	alt_acceptor	9285062	9285063	+	asmbl_5884,asmbl_5886	none	STRG.13971.2,Trinity_GG_25028_c0_g1_i1,Trinity_GG_25028_c0_g1_i2,blat.proc3825170.chain_2543,blat.proc3825170.chain_2544	5	STRG.13971.1	1
scaffold_10	alternate_exon	2787348	2788532	-	asmbl_4133,asmbl_4136	none	Trinity_GG_6692_c0_g1_i3,blat.proc3825154.chain_580,blat.proc3825154.chain_581	3	STRG.12105.2,Trinity_GG_6692_c0_g1_i2,blat.proc3825154.chain_584	3
scaffold_9	ends_in_intron	17610562	17610562	-	asmbl_55659,asmbl_55661	none	STRG.11851.3,STRG.11851.4,Trinity_GG_6530_c0_g2_i1,blat.proc3825154.chain_298	4	STRG.11851.1,STRG.11851.2,blat.proc3825154.chain_294,blat.proc3825154.chain_295,blat.proc3825154.chain_296	5
scaffold_4	spliced_intron	5653238	5653334	-	asmbl_42618,asmbl_42621	none	STRG.4472.2,STRG.4472.4,blat.proc3825150.chain_662	3	STRG.4472.1,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_657,blat.proc3825150.chain_658,blat.proc3825150.chain_659,blat.proc3825150.chain_663,blat.proc3825150.chain_666	9
scaffold_2	alt_acceptor	18045479	18045480	+	asmbl_25218	none	STRG.2692.2	1	STRG.2692.1,Trinity_GG_18844_c0_g1_i1	2
scaffold_27	alternate_exon	971742	973031	+	asmbl_35967,asmbl_35973	none	STRG.28595.4,Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	3	Trinity_GG_33133_c0_g1_i12,Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1712,blat.proc3825178.chain_1717	4
scaffold_22	ends_in_intron	5828814	5828814	-	asmbl_29289	none	blat.proc3825160.chain_2121	1	STRG.24931.1,blat.proc3825160.chain_2122	2
scaffold_5	spliced_intron	18713113	18713290	-	asmbl_44865	none	STRG.6999.3,Trinity_GG_3901_c0_g1_i2,blat.proc3825150.chain_3112	3	STRG.6999.1,STRG.6999.2,Trinity_GG_3901_c0_g1_i1,blat.proc3825150.chain_3113	4
scaffold_2	alt_donor	1334735	1334736	+	asmbl_24188,asmbl_24189	none	STRG.1604.4,blat.proc3825164.chain_1784,blat.proc3825164.chain_1785	3	STRG.1604.3	1
scaffold_1	spliced_intron	11173731	11174136	+	asmbl_2078,asmbl_2080	none	STRG.747.2,STRG.747.5,blat.proc3825164.chain_911,blat.proc3825164.chain_912	4	STRG.747.1,STRG.747.4,blat.proc3825164.chain_909,blat.proc3825164.chain_913,blat.proc3825164.chain_915	5
scaffold_10	alt_acceptor	13883170	13883171	+	asmbl_3626,asmbl_3627	none	STRG.12976.1,blat.proc3825170.chain_1589,blat.proc3825170.chain_1590	3	STRG.12976.2,Trinity_GG_24460_c0_g1_i4,blat.proc3825170.chain_1588	3
scaffold_12	retained_intron	4617396	4617716	-	asmbl_8423	none	Trinity_GG_8135_c0_g1_i2,blat.proc3825154.chain_3081	2	STRG.14640.1,STRG.14640.2,Trinity_GG_8135_c0_g1_i3,blat.proc3825154.chain_3082	4
scaffold_21	alt_acceptor	5253859	5253860	-	asmbl_27628	none	STRG.24058.1,blat.proc3825160.chain_1206	2	STRG.24058.2	1
scaffold_14	alt_acceptor	15565944	15565945	+	asmbl_12623	none	STRG.17796.3	1	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2534	3
scaffold_10	ends_in_intron	10414546	10414546	+	asmbl_3415	none	STRG.12728.2,blat.proc3825170.chain_1329	2	STRG.12728.1,blat.proc3825170.chain_1328	2
scaffold_15	starts_in_intron	6115838	6115838	-	asmbl_14247	none	blat.proc3825156.chain_3123	1	STRG.18277.1,blat.proc3825156.chain_3124	2
scaffold_9	alt_donor	8395535	8395536	+	asmbl_54167,asmbl_54170,asmbl_54173	none	STRG.11261.1,STRG.11261.2,blat.proc3825170.chain_58,blat.proc3825170.chain_61	4	STRG.11261.3,blat.proc3825170.chain_62,blat.proc3825170.chain_63	3
scaffold_9	alt_donor	9455084	9455085	-	asmbl_55175	none	STRG.11304.2	1	STRG.11304.1,blat.proc3825152.chain_3543,blat.proc3825152.chain_3544	3
scaffold_6	alt_acceptor	50366	50367	+	asmbl_46626	none	STRG.7061.2	1	STRG.7061.1,Trinity_GG_21197_c0_g1_i1,blat.proc3825166.chain_3267	3
scaffold_8	ends_in_intron	17682506	17682506	-	asmbl_52486	none	Trinity_GG_5890_c0_g1_i1,blat.proc3825152.chain_2838	2	STRG.10687.2,Trinity_GG_5890_c0_g1_i4,blat.proc3825152.chain_2840	3
scaffold_14	ends_in_intron	13897928	13897928	-	asmbl_13664	none	Trinity_GG_9899_c0_g1_i4,blat.proc3825156.chain_2447	2	STRG.17672.2,blat.proc3825156.chain_2445	2
scaffold_19	alt_acceptor	6377094	6377095	-	asmbl_22206	none	STRG.22160.1,blat.proc3825158.chain_2998	2	blat.proc3825158.chain_2997	1
scaffold_24	alt_donor	5940578	5940579	+	asmbl_32260,asmbl_32269,asmbl_32271,asmbl_32274	none	STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3667,blat.proc3825176.chain_3675,blat.proc3825176.chain_3677	5	STRG.26675.1,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3665,blat.proc3825176.chain_3671,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3676,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	11
scaffold_5	retained_intron	6578599	6580344	-	asmbl_44098	none	STRG.6057.1,blat.proc3825150.chain_2178	2	STRG.6057.2,blat.proc3825150.chain_2180	2
scaffold_7	starts_in_intron	8712041	8712041	-	asmbl_51035	none	blat.proc3825152.chain_1503	1	STRG.9112.1,STRG.9112.2,blat.proc3825152.chain_1504	3
scaffold_6	starts_in_intron	19115953	19115953	-	asmbl_49302	none	STRG.8585.4	1	STRG.8585.1,STRG.8585.3,STRG.8585.5,Trinity_GG_4894_c0_g1_i1,Trinity_GG_4894_c0_g1_i2,blat.proc3825152.chain_1021,blat.proc3825152.chain_1022	7
scaffold_10	skipped_exon	5857032	5858338	-	asmbl_4398,asmbl_4400,asmbl_4401	none	STRG.12409.1,STRG.12409.2,STRG.12409.3,blat.proc3825154.chain_985	4	blat.proc3825154.chain_983	1
scaffold_19	alternate_exon	10220926	10221441	+	asmbl_21627	none	STRG.22402.1,blat.proc3825174.chain_3299	2	STRG.22402.3,blat.proc3825174.chain_3298	2
scaffold_20	retained_intron	7469286	7469829	-	asmbl_25907,asmbl_25908,asmbl_25911	none	blat.proc3825160.chain_461,blat.proc3825160.chain_462,blat.proc3825160.chain_467	3	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_465,blat.proc3825160.chain_466	4
scaffold_25	alt_donor	5158049	5158050	-	asmbl_34251	none	blat.proc3825162.chain_806	1	STRG.27443.1,STRG.27443.2,STRG.27443.3,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809	6
scaffold_3	spliced_intron	19407196	19407399	-	asmbl_39651	none	STRG.4086.2	1	blat.proc3825150.chain_251	1
scaffold_7	alternate_exon	17611628	17611814	+	asmbl_50486	none	Trinity_GG_22616_c0_g1_i2	1	STRG.9612.2	1
scaffold_11	starts_in_intron	8098394	8098394	+	asmbl_5724	none	Trinity_GG_24917_c0_g1_i3,blat.proc3825170.chain_2343	2	STRG.13822.1,STRG.13822.2,STRG.13822.3,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2344,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	9
scaffold_3	retained_exon	7956311	7956397	-	asmbl_39005,asmbl_39007	none	STRG.3392.1,blat.proc3825148.chain_3237,blat.proc3825148.chain_3241	3	STRG.3392.2,blat.proc3825148.chain_3238,blat.proc3825148.chain_3240	3
scaffold_7	starts_in_intron	8295870	8295870	-	asmbl_50997	none	Trinity_GG_5116_c1_g1_i1,blat.proc3825152.chain_1458	2	STRG.9066.1,STRG.9066.2,STRG.9066.3,STRG.9066.4,blat.proc3825152.chain_1452,blat.proc3825152.chain_1453,blat.proc3825152.chain_1454,blat.proc3825152.chain_1457	8
scaffold_23	ends_in_intron	7294351	7294351	+	asmbl_31686	none	blat.proc3825176.chain_2901	1	STRG.26049.1,blat.proc3825176.chain_2900	2
scaffold_26	starts_in_intron	4332457	4332457	-	asmbl_35545	none	STRG.28149.3	1	STRG.28149.1,STRG.28149.2,STRG.28149.4,STRG.28149.5	4
scaffold_6	starts_in_intron	9059266	9059266	+	asmbl_47196	none	blat.proc3825168.chain_229	1	STRG.7782.1,blat.proc3825168.chain_230	2
scaffold_8	ends_in_intron	6023571	6023571	+	asmbl_52923	none	blat.proc3825168.chain_2608	1	blat.proc3825168.chain_2609,blat.proc3825168.chain_2610,blat.proc3825168.chain_2611,blat.proc3825168.chain_2613	4
scaffold_21	alt_acceptor	5956768	5956769	-	asmbl_27708	none	STRG.24127.1	1	blat.proc3825160.chain_1286,blat.proc3825160.chain_1287	2
scaffold_6	alternate_exon	5777556	5777634	-	asmbl_48433	none	STRG.7535.1,blat.proc3825150.chain_3719	2	STRG.7535.2,blat.proc3825150.chain_3718	2
scaffold_24	skipped_exon	7733066	7734328	-	asmbl_33055	none	STRG.26824.2	1	STRG.26824.1	1
scaffold_13	alternate_exon	11257854	11257923	+	asmbl_11259	none	STRG.16290.1	1	STRG.16290.2,blat.proc3825172.chain_1072	2
scaffold_20	retained_intron	3440981	3441081	-	asmbl_25692	none	STRG.23051.1,Trinity_GG_12865_c0_g1_i1,blat.proc3825160.chain_135	3	STRG.23051.2	1
scaffold_28	alternate_exon	2161675	2163894	+	asmbl_37338	none	STRG.29385.1,blat.proc3825178.chain_2552,blat.proc3825178.chain_2586	3	STRG.29385.2	1
scaffold_6	spliced_intron	2481572	2481735	-	asmbl_48131	none	STRG.7245.3	1	STRG.7245.4,STRG.7245.5,blat.proc3825150.chain_3361	3
scaffold_7	starts_in_intron	15001411	15001411	+	asmbl_50411	none	blat.proc3825168.chain_1976	1	STRG.9522.1,blat.proc3825168.chain_1977	2
scaffold_1	starts_in_intron	11619343	11619343	-	asmbl_645	none	Trinity_GG_357_c1_g1_i1,blat.proc3825148.chain_661	2	STRG.770.1,STRG.770.2,blat.proc3825148.chain_659,blat.proc3825148.chain_660	4
scaffold_13	ends_in_intron	4607189	4607189	-	asmbl_9642	none	STRG.15796.4	1	STRG.15796.1,blat.proc3825156.chain_670	2
scaffold_11	alt_acceptor	11935097	11935098	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.2,STRG.14177.3	2
scaffold_5	retained_intron	18561228	18562070	+	asmbl_46266,asmbl_46267	none	STRG.6987.2,STRG.6987.4,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i15,Trinity_GG_21132_c0_g1_i3,blat.proc3825166.chain_3149,blat.proc3825166.chain_3150	7	STRG.6987.1,STRG.6987.3,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i7,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	8
scaffold_12	starts_in_intron	12436220	12436220	+	asmbl_8002	none	blat.proc3825170.chain_3661	1	STRG.15153.2	1
scaffold_15	spliced_intron	15189220	15189525	+	asmbl_15725,asmbl_15728,asmbl_15732,asmbl_15735,asmbl_15736,asmbl_15740,asmbl_15741,asmbl_15742	none	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3520,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3529,blat.proc3825172.chain_3532,blat.proc3825172.chain_3536	11	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535	7
scaffold_4	retained_exon	15677765	15677879	-	asmbl_43114	none	blat.proc3825150.chain_1298	1	STRG.5151.1,STRG.5151.2,blat.proc3825150.chain_1295,blat.proc3825150.chain_1296,blat.proc3825150.chain_1297	5
scaffold_19	starts_in_intron	5574925	5574925	-	asmbl_22168	none	blat.proc3825158.chain_2952	1	STRG.22118.1,blat.proc3825158.chain_2953	2
scaffold_18	retained_intron	2758917	2759003	-	asmbl_19737,asmbl_19739	none	Trinity_GG_11829_c0_g1_i3,blat.proc3825158.chain_2078,blat.proc3825158.chain_2081	3	STRG.21136.1,STRG.21136.2,blat.proc3825158.chain_2079,blat.proc3825158.chain_2080	4
scaffold_11	ends_in_intron	13302461	13302461	+	asmbl_6051	none	blat.proc3825170.chain_2740	1	STRG.14200.1,blat.proc3825170.chain_2741	2
scaffold_18	alt_acceptor	1901421	1901422	-	asmbl_19655,asmbl_19656,asmbl_19658,asmbl_19660,asmbl_19663	none	STRG.21081.3,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	6	STRG.21081.6,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014	3
scaffold_21	ends_in_intron	2473294	2473294	-	asmbl_27459	none	Trinity_GG_13331_c0_g1_i1,blat.proc3825160.chain_1049	2	STRG.23874.1,STRG.23874.2,blat.proc3825160.chain_1043,blat.proc3825160.chain_1044,blat.proc3825160.chain_1045,blat.proc3825160.chain_1047,blat.proc3825160.chain_1048	7
scaffold_14	spliced_intron	15345450	15346208	-	asmbl_13715	none	blat.proc3825156.chain_2607	1	STRG.17765.2	1
scaffold_5	alt_acceptor	2536535	2536536	+	asmbl_45174,asmbl_45175	none	STRG.5779.3,blat.proc3825166.chain_2002	2	STRG.5779.1,STRG.5779.4,blat.proc3825166.chain_2003,blat.proc3825166.chain_2005	4
scaffold_27	alt_acceptor	6907779	6907780	+	asmbl_36416	none	STRG.29055.1,blat.proc3825178.chain_2261	2	STRG.29055.2	1
scaffold_7	ends_in_intron	3575837	3575837	-	asmbl_50804	none	Trinity_GG_5001_c0_g1_i1,blat.proc3825152.chain_1240	2	STRG.8756.1,blat.proc3825152.chain_1239	2
scaffold_24	retained_intron	5945203	5947592	+	asmbl_32266,asmbl_32271,asmbl_32272	none	blat.proc3825176.chain_3665,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671	3	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	13
scaffold_7	alternate_exon	1524145	1524239	-	asmbl_50745	none	STRG.8654.1	1	STRG.8654.2,Trinity_GG_4949_c0_g1_i2,blat.proc3825152.chain_1150	3
scaffold_21	retained_intron	8129161	8129599	-	asmbl_27890	none	STRG.24349.1,Trinity_GG_13590_c0_g1_i7,blat.proc3825160.chain_1513	3	blat.proc3825160.chain_1510,blat.proc3825160.chain_1511	2
scaffold_12	alternate_exon	10534378	10536248	+	asmbl_7928	none	STRG.15021.2	1	Trinity_GG_25582_c0_g1_i1,blat.proc3825170.chain_3525	2
scaffold_7	alternate_exon	8564247	8564281	-	asmbl_51017	none	blat.proc3825152.chain_1485	1	STRG.9087.2	1
scaffold_6	alt_acceptor	15944985	15944986	+	asmbl_47683	none	blat.proc3825152.chain_740	1	STRG.8324.3	1
scaffold_7	retained_intron	11121409	11121518	-	asmbl_51151	none	Trinity_GG_5209_c0_g1_i1,blat.proc3825152.chain_1604	2	STRG.9259.1,blat.proc3825152.chain_1605	2
scaffold_15	retained_intron	4497290	4497450	+	asmbl_15152	none	blat.proc3825172.chain_2830	1	STRG.18181.1,blat.proc3825172.chain_2831	2
scaffold_27	retained_intron	8919877	8919990	+	asmbl_36478	none	STRG.29131.1,Trinity_GG_33416_c0_g1_i1,blat.proc3825178.chain_2294	3	blat.proc3825178.chain_2293	1
scaffold_12	retained_intron	16399852	16401681	+	asmbl_8168,asmbl_8169,asmbl_8170,asmbl_8172	none	STRG.15402.1,STRG.15402.3,STRG.15402.5,STRG.15402.6,Trinity_GG_25733_c0_g1_i10,Trinity_GG_25733_c0_g1_i11,Trinity_GG_25733_c0_g1_i13,blat.proc3825172.chain_40,blat.proc3825172.chain_46,blat.proc3825172.chain_47,blat.proc3825172.chain_48	11	STRG.15402.4,Trinity_GG_25733_c0_g1_i9,blat.proc3825172.chain_42	3
scaffold_19	alt_donor	12207921	12207922	+	asmbl_21763,asmbl_21764	none	STRG.22551.3,Trinity_GG_29759_c0_g1_i5,blat.proc3825174.chain_3520	3	STRG.22551.1,Trinity_GG_29759_c0_g1_i1,blat.proc3825174.chain_3521	3
scaffold_14	spliced_intron	8330057	8330148	-	asmbl_13286	none	STRG.17260.1,blat.proc3825156.chain_2004	2	blat.proc3825156.chain_2005	1
scaffold_26	spliced_intron	4678864	4679059	-	asmbl_35584	none	STRG.28192.2	1	STRG.28192.1	1
scaffold_6	alt_donor	3287976	3287977	-	asmbl_48235	none	STRG.7334.2	1	STRG.7334.1,STRG.7334.3	2
scaffold_20	spliced_intron	7185087	7185227	-	asmbl_25884	none	blat.proc3825160.chain_383	1	Trinity_GG_12999_c0_g1_i1,blat.proc3825160.chain_385	2
scaffold_11	alt_donor	12905441	12905442	-	asmbl_7101,asmbl_7102	none	STRG.14175.1,STRG.14175.2	2	blat.proc3825154.chain_2732	1
scaffold_10	ends_in_intron	14700317	14700317	+	asmbl_3658	none	blat.proc3825170.chain_1627	1	STRG.13024.1,STRG.13024.2,blat.proc3825170.chain_1624,blat.proc3825170.chain_1625,blat.proc3825170.chain_1626,blat.proc3825170.chain_1628	6
scaffold_14	alt_donor	10479363	10479364	+	asmbl_12325	none	STRG.17398.3	1	STRG.17398.1,blat.proc3825172.chain_2142	2
scaffold_8	alt_acceptor	8747341	8747342	+	asmbl_53033	none	STRG.10133.1,blat.proc3825168.chain_2691	2	STRG.10133.2,blat.proc3825168.chain_2692	2
scaffold_10	retained_exon	1292231	1292299	+	asmbl_2926	none	STRG.12028.2	1	STRG.12028.1,blat.proc3825170.chain_725	2
scaffold_3	spliced_intron	795219	795435	+	asmbl_39814	none	STRG.2906.1,blat.proc3825164.chain_3160	2	blat.proc3825164.chain_3161,blat.proc3825164.chain_3162	2
scaffold_10	alt_acceptor	12680943	12680944	+	asmbl_3536,asmbl_3537	none	STRG.12860.1,STRG.12860.3,Trinity_GG_24411_c0_g1_i1,Trinity_GG_24411_c0_g1_i2	4	STRG.12860.2	1
scaffold_19	skipped_exon	10221442	10223579	+	asmbl_21627	none	STRG.22402.1,blat.proc3825174.chain_3299	2	STRG.22402.2,blat.proc3825174.chain_3297	2
scaffold_16	spliced_intron	6232211	6232250	-	asmbl_17155	none	STRG.19360.1	1	blat.proc3825158.chain_513	1
scaffold_27	alt_donor	4945235	4945236	+	asmbl_36326	none	blat.proc3825178.chain_2145	1	STRG.28932.1,STRG.28932.2,STRG.28932.3,STRG.28932.4,blat.proc3825178.chain_2146,blat.proc3825178.chain_2147	6
scaffold_26	retained_exon	9774175	9774293	+	asmbl_35264	none	STRG.28516.6	1	STRG.28516.1,STRG.28516.2,STRG.28516.3,STRG.28516.7,blat.proc3825178.chain_1649	5
scaffold_12	ends_in_intron	9987591	9987591	-	asmbl_8710,asmbl_8712	none	Trinity_GG_8331_c0_g1_i3,blat.proc3825154.chain_3437,blat.proc3825154.chain_3440	3	STRG.14972.3,blat.proc3825154.chain_3439	2
scaffold_10	alternate_exon	2042403	2042457	-	asmbl_4099	none	STRG.12058.2	1	STRG.12058.1,blat.proc3825154.chain_621	2
scaffold_12	starts_in_intron	13051423	13051423	+	asmbl_8037	none	blat.proc3825170.chain_3691	1	STRG.15195.1,blat.proc3825170.chain_3690	2
scaffold_13	alt_acceptor	3352902	3352903	-	asmbl_9537	none	STRG.15647.2	1	STRG.15647.1,blat.proc3825156.chain_529	2
scaffold_18	skipped_exon	1886374	1887983	-	asmbl_19653,asmbl_19657,asmbl_19658,asmbl_19661,asmbl_19662	none	STRG.21081.1,blat.proc3825158.chain_2010,blat.proc3825158.chain_2013,blat.proc3825158.chain_2018	4	STRG.21081.3,STRG.21081.7,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2014	5
scaffold_28	ends_in_intron	5244594	5244594	+	asmbl_37578	none	Trinity_GG_33753_c1_g1_i1,blat.proc3825178.chain_2849	2	STRG.29677.1,Trinity_GG_33753_c0_g1_i3,blat.proc3825178.chain_2846	3
scaffold_5	retained_intron	13246847	13246949	+	asmbl_45869	none	blat.proc3825166.chain_2751	1	STRG.6568.1,STRG.6568.2,STRG.6568.3,blat.proc3825166.chain_2749,blat.proc3825166.chain_2750	5
scaffold_21	spliced_intron	4944460	4944587	+	asmbl_28538,asmbl_28542	none	STRG.24044.1,blat.proc3825176.chain_1190,blat.proc3825176.chain_1192	3	blat.proc3825176.chain_1191	1
scaffold_21	starts_in_intron	7004230	7004230	-	asmbl_27771	none	STRG.24247.2,blat.proc3825160.chain_1378	2	STRG.24247.1,blat.proc3825160.chain_1377	2
scaffold_5	alt_acceptor	6664376	6664377	-	asmbl_44129	none	STRG.6073.1	1	STRG.6073.2,STRG.6073.3	2
scaffold_18	alt_donor	1324799	1324800	+	asmbl_20337,asmbl_20338,asmbl_20341	none	STRG.21023.2,STRG.21023.3,blat.proc3825174.chain_1861	3	STRG.21023.1,blat.proc3825174.chain_1860,blat.proc3825174.chain_1862	3
scaffold_21	retained_intron	1657218	1657472	+	asmbl_28351,asmbl_28352	none	blat.proc3825176.chain_1055,blat.proc3825176.chain_1058	2	STRG.23819.1,Trinity_GG_30526_c0_g1_i11,Trinity_GG_30526_c0_g1_i12,Trinity_GG_30526_c0_g1_i4,Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1057,blat.proc3825176.chain_1059,blat.proc3825176.chain_1060,blat.proc3825176.chain_1061	10
scaffold_17	retained_intron	9007049	9007385	+	asmbl_19057	none	blat.proc3825174.chain_1323	1	STRG.20525.1,blat.proc3825174.chain_1320,blat.proc3825174.chain_1322	3
scaffold_13	starts_in_intron	3510350	3510350	+	asmbl_10699	none	blat.proc3825172.chain_415	1	STRG.15664.1	1
scaffold_17	skipped_exon	5489357	5490876	-	asmbl_17940	none	STRG.20268.2	1	STRG.20268.1,blat.proc3825158.chain_1253	2
scaffold_8	spliced_intron	4194632	4194691	-	asmbl_51759	none	blat.proc3825152.chain_2109	1	STRG.9896.1	1
scaffold_28	alt_acceptor	6515706	6515707	-	asmbl_38349	none	STRG.29749.1	1	STRG.29749.3	1
scaffold_9	alt_acceptor	12335647	12335648	-	asmbl_55373	none	STRG.11557.2	1	STRG.11557.1	1
scaffold_149	starts_in_intron	1375	1375	+	asmbl_13900	none	Trinity_GG_34029_c0_g1_i2,blat.proc3825178.chain_3307	2	STRG.30192.2,blat.proc3825178.chain_3306	2
scaffold_14	ends_in_intron	8002830	8002830	+	asmbl_12182	none	STRG.17214.1,Trinity_GG_26783_c0_g1_i3,blat.proc3825172.chain_1973	3	STRG.17214.2,Trinity_GG_26783_c0_g1_i2,blat.proc3825172.chain_1975	3
scaffold_1	retained_intron	9165141	9165231	-	asmbl_516	none	blat.proc3825148.chain_612	1	STRG.612.1,blat.proc3825148.chain_613,blat.proc3825148.chain_614	3
scaffold_10	retained_intron	5200830	5200903	-	asmbl_4345,asmbl_4347	none	STRG.12347.1,blat.proc3825154.chain_912,blat.proc3825154.chain_913	3	STRG.12347.2,blat.proc3825154.chain_914	2
scaffold_19	retained_intron	12686175	12686347	-	asmbl_22529	none	blat.proc3825158.chain_3366	1	STRG.22592.1,STRG.22592.2,blat.proc3825158.chain_3367,blat.proc3825158.chain_3368,blat.proc3825158.chain_3369	5
scaffold_2	starts_in_intron	9863846	9863846	-	asmbl_23396,asmbl_23397	none	STRG.2188.2,STRG.2188.3	2	STRG.2188.1,blat.proc3825148.chain_2216	2
scaffold_16	ends_in_intron	6133760	6133760	+	asmbl_16274	none	Trinity_GG_27874_c0_g1_i5,blat.proc3825174.chain_192	2	STRG.19347.1,STRG.19347.2,blat.proc3825174.chain_191,blat.proc3825174.chain_193,blat.proc3825174.chain_194	5
scaffold_9	alt_acceptor	650434	650435	+	asmbl_53785	none	STRG.10795.3	1	STRG.10795.1,STRG.10795.2,blat.proc3825168.chain_3338	3
scaffold_18	spliced_intron	824174	824807	+	asmbl_20327,asmbl_20328	none	STRG.21008.1,STRG.21008.3,blat.proc3825174.chain_1872	3	STRG.21008.2,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	3
scaffold_21	retained_intron	11228603	11228728	-	asmbl_28096	none	STRG.24589.1,blat.proc3825160.chain_1831	2	STRG.24589.2	1
scaffold_24	retained_exon	6832782	6832859	+	asmbl_32346,asmbl_32347,asmbl_32349,asmbl_32353	none	STRG.26736.1,STRG.26736.2,blat.proc3825176.chain_3729,blat.proc3825176.chain_3730,blat.proc3825176.chain_3732,blat.proc3825176.chain_3734	6	STRG.26736.4	1
scaffold_20	starts_in_intron	11684668	11684668	+	asmbl_27089	none	Trinity_GG_30424_c0_g1_i2,blat.proc3825176.chain_887	2	STRG.23681.1,blat.proc3825176.chain_886	2
scaffold_19	alt_acceptor	1038789	1038790	+	asmbl_21228	none	STRG.21896.1,blat.proc3825174.chain_2871	2	STRG.21896.2	1
scaffold_8	alt_donor	18248542	18248543	-	asmbl_52525,asmbl_52526,asmbl_52527	none	STRG.10728.2,STRG.10728.3,STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3016,blat.proc3825152.chain_3018,blat.proc3825152.chain_3019	7	STRG.10728.1	1
scaffold_5	skipped_exon	5738210	5739761	+	asmbl_45364,asmbl_45366	none	STRG.5992.5,blat.proc3825166.chain_2135	2	STRG.5992.4,STRG.5992.6,blat.proc3825166.chain_2131	3
scaffold_7	starts_in_intron	10569905	10569905	-	asmbl_51136	none	STRG.9238.1,blat.proc3825152.chain_1596	2	STRG.9238.2,blat.proc3825152.chain_1594	2
scaffold_28	ends_in_intron	575515	575515	-	asmbl_37917,asmbl_37919	none	STRG.29279.2,blat.proc3825162.chain_2427	2	STRG.29279.1,blat.proc3825162.chain_2428,blat.proc3825162.chain_2429	3
scaffold_2367	alt_acceptor	687	688	-	asmbl_31992	none	STRG.30744.1,blat.proc3825164.chain_1	2	STRG.30744.2	1
scaffold_15	alt_donor	6197250	6197251	+	asmbl_15246,asmbl_15249	none	STRG.18283.1,STRG.18283.5	2	STRG.18283.2,STRG.18283.4	2
scaffold_8	retained_intron	4194632	4194691	-	asmbl_51760	none	STRG.9896.1	1	blat.proc3825152.chain_2109	1
scaffold_2	starts_in_intron	703329	703329	-	asmbl_22818	none	blat.proc3825148.chain_1470	1	STRG.1543.1	1
scaffold_10	spliced_intron	715100	715709	-	asmbl_3988,asmbl_3989,asmbl_3992	none	STRG.11957.1,STRG.11957.4,STRG.11957.5	3	STRG.11957.2,STRG.11957.3,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541,blat.proc3825154.chain_545	5
scaffold_7	retained_intron	13205487	13205684	+	asmbl_50315,asmbl_50316	none	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1974,blat.proc3825168.chain_1975	3	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1973	3
scaffold_1	starts_in_intron	11656192	11656192	+	asmbl_2120	none	Trinity_GG_17783_c0_g1_i3,blat.proc3825164.chain_899	2	STRG.776.1,blat.proc3825164.chain_898,blat.proc3825164.chain_900	3
scaffold_5	starts_in_intron	9514445	9514445	-	asmbl_44282	none	blat.proc3825150.chain_2477	1	STRG.6270.1,blat.proc3825150.chain_2478	2
scaffold_14	alt_acceptor	7497480	7497481	+	asmbl_12170	none	STRG.17193.3	1	STRG.17193.1,STRG.17193.2,STRG.17193.4,blat.proc3825172.chain_1878	4
scaffold_20	alt_acceptor	417145	417146	+	asmbl_26347	none	STRG.22734.2	1	STRG.22734.1,blat.proc3825174.chain_3714	2
scaffold_1	retained_exon	20134840	20134955	-	asmbl_1171	none	STRG.1386.2	1	blat.proc3825148.chain_1398	1
scaffold_18	retained_intron	7866184	7866281	-	asmbl_19983	none	blat.proc3825158.chain_2407	1	STRG.21486.1,blat.proc3825158.chain_2406	2
scaffold_7	alt_acceptor	15031483	15031484	-	asmbl_51354,asmbl_51355	none	STRG.9526.1,STRG.9526.2	2	STRG.9526.3	1
scaffold_23	alternate_exon	7875828	7877367	-	asmbl_31050	none	STRG.26094.2,blat.proc3825160.chain_3269	2	STRG.26094.1,blat.proc3825160.chain_3268	2
scaffold_24	alt_acceptor	7350455	7350456	-	asmbl_33029	none	STRG.26790.2	1	STRG.26790.1,blat.proc3825162.chain_66	2
scaffold_19	starts_in_intron	12671592	12671592	+	asmbl_21820	none	Trinity_GG_29802_c0_g1_i4,blat.proc3825174.chain_3615	2	STRG.22581.1,blat.proc3825174.chain_3614	2
scaffold_21	retained_intron	7507874	7507982	-	asmbl_27834	none	Trinity_GG_13549_c0_g1_i1,blat.proc3825160.chain_1433	2	STRG.24283.1,STRG.24283.2,blat.proc3825160.chain_1432	3
scaffold_26	alt_acceptor	133258	133259	-	asmbl_35371	none	STRG.27835.1,blat.proc3825162.chain_1181	2	blat.proc3825162.chain_1182	1
scaffold_4	spliced_intron	8822899	8822991	-	asmbl_42794	none	STRG.4698.2,blat.proc3825150.chain_833	2	STRG.4698.1,blat.proc3825150.chain_832	2
scaffold_22	alt_acceptor	9884821	9884822	+	asmbl_30324	none	STRG.25327.1,Trinity_GG_31313_c0_g1_i1,blat.proc3825176.chain_2380	3	STRG.25327.2	1
scaffold_14	starts_in_intron	1074857	1074857	-	asmbl_12858	none	STRG.16767.1	1	Trinity_GG_9391_c1_g1_i1,blat.proc3825156.chain_1595	2
scaffold_1	spliced_intron	8733191	8733283	-	asmbl_482,asmbl_483,asmbl_484	none	STRG.576.1,blat.proc3825148.chain_569,blat.proc3825148.chain_570,blat.proc3825148.chain_571	4	blat.proc3825148.chain_568	1
scaffold_6	alt_acceptor	14087947	14087948	+	asmbl_47574	none	STRG.8175.2	1	STRG.8175.1,blat.proc3825168.chain_605,blat.proc3825168.chain_607	3
scaffold_6	retained_intron	13919016	13919162	-	asmbl_48955,asmbl_48960	none	STRG.8139.1,blat.proc3825152.chain_568,blat.proc3825152.chain_570	3	STRG.8139.4	1
scaffold_17	retained_exon	6204733	6204817	-	asmbl_17974,asmbl_17975	none	STRG.20295.1,Trinity_GG_11408_c0_g1_i1,blat.proc3825158.chain_1335,blat.proc3825158.chain_1336	4	Trinity_GG_11408_c0_g1_i2,blat.proc3825158.chain_1334	2
scaffold_13	alt_acceptor	15672323	15672324	+	asmbl_11525,asmbl_11526,asmbl_11527	none	STRG.16612.1,STRG.16612.2,STRG.16612.3	3	STRG.16612.5,STRG.16612.6	2
scaffold_12	retained_exon	10004225	10004603	-	asmbl_8715	none	STRG.14976.3	1	STRG.14976.2,blat.proc3825154.chain_3480	2
scaffold_5	alt_donor	189929	189930	+	asmbl_45088	none	STRG.5587.3	1	STRG.5587.1	1
scaffold_2	alternate_exon	14204349	14205043	-	asmbl_23573	none	STRG.2414.1,blat.proc3825148.chain_2407	2	STRG.2414.3,STRG.2414.4,blat.proc3825148.chain_2404	3
scaffold_18	retained_intron	616372	616548	+	asmbl_20308	none	Trinity_GG_28867_c0_g1_i2,blat.proc3825174.chain_1941	2	STRG.21003.1,Trinity_GG_28867_c0_g1_i1,blat.proc3825174.chain_1942	3
scaffold_28	retained_intron	9115472	9115873	-	asmbl_38491,asmbl_38492	none	STRG.29963.2,blat.proc3825162.chain_3136,blat.proc3825162.chain_3137	3	STRG.29963.1,blat.proc3825162.chain_3135	2
scaffold_28	alt_acceptor	3293170	3293171	-	asmbl_38143	none	STRG.29547.2,blat.proc3825162.chain_2703	2	STRG.29547.1,blat.proc3825162.chain_2702	2
scaffold_4	retained_intron	8097999	8098087	-	asmbl_42747	none	Trinity_GG_2587_c0_g1_i2	1	STRG.4626.1	1
scaffold_11	spliced_intron	6952071	6952149	-	asmbl_6747	none	STRG.13721.2,blat.proc3825154.chain_2298	2	STRG.13721.1,STRG.13721.3,blat.proc3825154.chain_2294,blat.proc3825154.chain_2295,blat.proc3825154.chain_2296,blat.proc3825154.chain_2297	6
scaffold_3	alt_donor	17843965	17843966	+	asmbl_40707,asmbl_40708	none	STRG.4004.3,STRG.4004.4	2	STRG.4004.1,STRG.4004.2,blat.proc3825166.chain_495,blat.proc3825166.chain_496,blat.proc3825166.chain_497	5
scaffold_9	starts_in_intron	9414972	9414972	-	asmbl_55169	none	blat.proc3825152.chain_3560	1	STRG.11303.1,blat.proc3825152.chain_3562	2
scaffold_18	alternate_exon	8722739	8722773	-	asmbl_20019	none	STRG.21536.2	1	STRG.21536.1,blat.proc3825158.chain_2430	2
scaffold_2	alternate_exon	17714872	17714896	-	asmbl_23745	none	STRG.2669.4	1	STRG.2669.1,STRG.2669.2,blat.proc3825148.chain_2606,blat.proc3825148.chain_2607	4
scaffold_18	spliced_intron	2050891	2050959	-	asmbl_19693	none	STRG.21094.3	1	Trinity_GG_11827_c1_g1_i2,blat.proc3825158.chain_2075	2
scaffold_5	starts_in_intron	1635232	1635232	+	asmbl_45138	none	Trinity_GG_20433_c0_g1_i1	1	STRG.5719.1	1
scaffold_13	retained_intron	16460477	16460808	-	asmbl_10302	none	Trinity_GG_9330_c0_g1_i3,blat.proc3825156.chain_1487	2	STRG.16703.1,STRG.16703.2,STRG.16703.3,STRG.16703.4,Trinity_GG_9330_c0_g1_i5,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1486,blat.proc3825156.chain_1488,blat.proc3825156.chain_1489	9
scaffold_70	ends_in_intron	7894	7894	-	asmbl_51598	none	STRG.30109.1	1	STRG.30108.1,blat.proc3825162.chain_3271,blat.proc3825162.chain_3272,blat.proc3825178.chain_3226	4
scaffold_20	skipped_exon	1616762	1619278	-	asmbl_25590	none	STRG.22893.3	1	STRG.22893.1,STRG.22893.2,STRG.22893.4	3
scaffold_21	skipped_exon	9840273	9840911	+	asmbl_28848	none	blat.proc3825176.chain_1601	1	STRG.24439.1,blat.proc3825176.chain_1600	2
scaffold_5	alt_donor	8539946	8539947	-	asmbl_44214,asmbl_44215,asmbl_44218	none	STRG.6198.1,STRG.6198.5,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419	4	STRG.6198.3,STRG.6198.4,blat.proc3825150.chain_2421	3
scaffold_4	alt_donor	15116251	15116252	+	asmbl_41929	none	STRG.5115.2	1	STRG.5115.1,blat.proc3825166.chain_1547	2
scaffold_12	alternate_exon	12439703	12439738	+	asmbl_8006	none	STRG.15151.1	1	STRG.15151.2,STRG.15151.3,blat.proc3825170.chain_3676,blat.proc3825170.chain_3677	4
scaffold_10	ends_in_intron	8540567	8540567	-	asmbl_4598	none	blat.proc3825154.chain_1230	1	STRG.12610.3,blat.proc3825154.chain_1228	2
scaffold_12	retained_intron	14100592	14100679	-	asmbl_8974	none	Trinity_GG_8539_c0_g1_i1,blat.proc3825156.chain_31	2	STRG.15238.1,Trinity_GG_8539_c0_g1_i2,blat.proc3825156.chain_32	3
scaffold_10	starts_in_intron	8794702	8794702	-	asmbl_4616	none	blat.proc3825154.chain_1245	1	STRG.12633.1	1
scaffold_13	spliced_intron	6396106	6396423	+	asmbl_10925,asmbl_10929	none	STRG.15929.4,Trinity_GG_26055_c0_g1_i1,blat.proc3825172.chain_652	3	STRG.15929.1,STRG.15929.2,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_654,blat.proc3825172.chain_655	6
scaffold_25	alt_acceptor	289963	289964	+	asmbl_33320	none	Trinity_GG_32268_c0_g2_i1,blat.proc3825178.chain_271	2	STRG.27068.1	1
scaffold_2	retained_intron	15272997	15273081	+	asmbl_25019	none	blat.proc3825164.chain_2618	1	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	6
scaffold_14	alt_donor	6283692	6283693	+	asmbl_12057	none	STRG.17079.2,blat.proc3825172.chain_1853	2	STRG.17079.1,STRG.17079.3,blat.proc3825172.chain_1848,blat.proc3825172.chain_1849	4
scaffold_12	skipped_exon	2576972	2578181	+	asmbl_7500	none	STRG.14503.2,Trinity_GG_25328_c0_g1_i2,blat.proc3825170.chain_3054	3	STRG.14503.1,Trinity_GG_25328_c0_g1_i1,blat.proc3825170.chain_3053	3
scaffold_5	alt_acceptor	4696466	4696467	+	asmbl_45289	none	STRG.5925.2	1	STRG.5925.3,blat.proc3825166.chain_2149,blat.proc3825166.chain_2150	3
scaffold_10	starts_in_intron	4055793	4055793	-	asmbl_4258	none	blat.proc3825154.chain_825	1	STRG.12246.1,STRG.12246.2,STRG.12246.3,STRG.12246.4,STRG.12246.6,STRG.12246.7,blat.proc3825154.chain_826	7
scaffold_13	starts_in_intron	3085844	3085844	+	asmbl_10659	none	STRG.15621.4,blat.proc3825172.chain_371	2	STRG.15621.1,STRG.15621.2,blat.proc3825172.chain_370,blat.proc3825172.chain_372	4
scaffold_14	ends_in_intron	6878523	6878523	-	asmbl_13164	none	Trinity_GG_9572_c0_g1_i2,blat.proc3825156.chain_1877	2	STRG.17127.1,Trinity_GG_9572_c0_g1_i1,blat.proc3825156.chain_1878	3
scaffold_8	skipped_exon	17974030	17974808	-	asmbl_52498	none	STRG.10702.2	1	STRG.10702.1,Trinity_GG_5951_c0_g1_i1,blat.proc3825152.chain_2975	3
scaffold_15	retained_intron	4493364	4493480	+	asmbl_15144	none	blat.proc3825172.chain_2857	1	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2858	8
scaffold_7	alt_donor	18394632	18394633	-	asmbl_51467,asmbl_51468,asmbl_51469,asmbl_51470,asmbl_51471,asmbl_51472,asmbl_51473,asmbl_51474,asmbl_51475,asmbl_51479	none	STRG.9670.1,STRG.9670.2,STRG.9670.3,STRG.9670.4,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016,blat.proc3825152.chain_2018,blat.proc3825152.chain_2021	16	blat.proc3825152.chain_2020	1
scaffold_23	alternate_exon	2208940	2221298	-	asmbl_30717	none	STRG.25698.6	1	STRG.25698.4	1
scaffold_1611	starts_in_intron	1290	1290	+	asmbl_17601	none	Trinity_GG_34236_c0_g1_i2	1	STRG.30634.1,blat.proc3825178.chain_3620	2
scaffold_10	spliced_intron	3039893	3040106	+	asmbl_3022,asmbl_3024	none	STRG.12119.1,STRG.12119.2,blat.proc3825170.chain_805	3	blat.proc3825170.chain_806	1
scaffold_20	starts_in_intron	5950185	5950185	-	asmbl_25808	none	blat.proc3825160.chain_292	1	STRG.23205.1,blat.proc3825160.chain_293	2
scaffold_15	alt_acceptor	13982377	13982378	-	asmbl_14695	none	blat.proc3825156.chain_3683	1	STRG.18830.2,Trinity_GG_10577_c0_g1_i2,blat.proc3825156.chain_3684	3
scaffold_22	alternate_exon	5959232	5959294	-	asmbl_29299	none	blat.proc3825160.chain_2134	1	STRG.24946.1,blat.proc3825160.chain_2135	2
scaffold_5	alt_acceptor	8413713	8413714	+	asmbl_45549	none	STRG.6187.3,blat.proc3825166.chain_2306	2	STRG.6187.2,blat.proc3825166.chain_2307	2
scaffold_8	spliced_intron	10601114	10601193	-	asmbl_52114	none	STRG.10299.1,blat.proc3825152.chain_2531	2	Trinity_GG_5721_c0_g1_i2,blat.proc3825152.chain_2530	2
scaffold_1	ends_in_intron	13890343	13890343	+	asmbl_2324	none	blat.proc3825164.chain_1166	1	STRG.997.1,STRG.997.2,STRG.997.3,STRG.997.4,blat.proc3825164.chain_1165,blat.proc3825164.chain_1167,blat.proc3825164.chain_1168,blat.proc3825164.chain_1169,blat.proc3825164.chain_1170	9
scaffold_15	alternate_exon	11165708	11166045	+	asmbl_15485	none	STRG.18593.2	1	STRG.18593.1	1
scaffold_14	spliced_intron	405268	405642	+	asmbl_11748,asmbl_11750,asmbl_11753	none	STRG.16734.2,STRG.16734.3,STRG.16734.4,blat.proc3825172.chain_1502,blat.proc3825172.chain_1508	5	STRG.16734.1,STRG.16734.6,Trinity_GG_26526_c0_g1_i5,Trinity_GG_26526_c0_g1_i6,blat.proc3825172.chain_1510,blat.proc3825172.chain_1513	6
scaffold_8	retained_intron	16398423	16398835	-	asmbl_52388,asmbl_52394	none	STRG.10626.1,blat.proc3825152.chain_2845,blat.proc3825152.chain_2852	3	STRG.10626.2,STRG.10626.3,STRG.10626.4,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2849,blat.proc3825152.chain_2851,blat.proc3825152.chain_2853	8
scaffold_13	retained_intron	3810685	3810836	-	asmbl_9585,asmbl_9586	none	blat.proc3825156.chain_543,blat.proc3825156.chain_546	2	STRG.15712.1,blat.proc3825156.chain_542,blat.proc3825156.chain_545	3
scaffold_8	ends_in_intron	10488457	10488457	-	asmbl_52106	none	blat.proc3825152.chain_2459	1	STRG.10291.1,blat.proc3825152.chain_2458,blat.proc3825152.chain_2460	3
scaffold_15	spliced_intron	4231931	4232179	+	asmbl_15128,asmbl_15129,asmbl_15131,asmbl_15132,asmbl_15135	none	STRG.18172.1,STRG.18172.2,blat.proc3825172.chain_2836,blat.proc3825172.chain_2837,blat.proc3825172.chain_2838,blat.proc3825172.chain_2841,blat.proc3825172.chain_2843	7	blat.proc3825172.chain_2840,blat.proc3825172.chain_2842	2
scaffold_19	retained_intron	13254452	13254529	-	asmbl_22626	none	STRG.22643.1,Trinity_GG_12610_c0_g1_i1,blat.proc3825158.chain_3477	3	blat.proc3825158.chain_3478	1
scaffold_6	alt_acceptor	10170460	10170461	+	asmbl_47262	none	STRG.7850.2	1	STRG.7850.1	1
scaffold_14	alt_acceptor	1613601	1613602	+	asmbl_11829	none	STRG.16804.4,Trinity_GG_26566_c0_g2_i4,blat.proc3825172.chain_1589	3	STRG.16804.1,STRG.16804.2,STRG.16804.3,Trinity_GG_26566_c0_g2_i2,blat.proc3825172.chain_1587,blat.proc3825172.chain_1588	6
scaffold_14	ends_in_intron	10495892	10495892	+	asmbl_12328	none	blat.proc3825172.chain_2099	1	STRG.17401.1,blat.proc3825172.chain_2098	2
scaffold_16	retained_intron	2386305	2386343	-	asmbl_16964	none	STRG.19133.1,blat.proc3825158.chain_271	2	STRG.19133.3	1
scaffold_3	spliced_intron	14425017	14426154	+	asmbl_40521	none	STRG.3788.1,Trinity_GG_19450_c0_g1_i4,blat.proc3825166.chain_302	3	STRG.3788.2,Trinity_GG_19450_c0_g1_i1,Trinity_GG_19450_c0_g1_i2,Trinity_GG_19450_c0_g1_i3,blat.proc3825166.chain_304,blat.proc3825166.chain_305,blat.proc3825166.chain_306	7
scaffold_5	ends_in_intron	4663073	4663073	-	asmbl_43980	none	blat.proc3825150.chain_2124	1	STRG.5923.1,STRG.5923.2	2
scaffold_9	spliced_intron	16654233	16654417	-	asmbl_55603,asmbl_55604,asmbl_55605,asmbl_55606	none	STRG.11813.1,blat.proc3825154.chain_279,blat.proc3825154.chain_280,blat.proc3825154.chain_281,blat.proc3825154.chain_282	5	Trinity_GG_6525_c0_g1_i4,blat.proc3825154.chain_283	2
scaffold_13	spliced_intron	3092016	3092119	-	asmbl_9514	none	STRG.15615.2	1	STRG.15615.1	1
scaffold_26	alt_acceptor	6301336	6301337	-	asmbl_35670	none	blat.proc3825162.chain_1560	1	STRG.28327.1,STRG.28327.2,STRG.28327.3,blat.proc3825162.chain_1558,blat.proc3825162.chain_1559	5
scaffold_20	alternate_exon	2722278	2722315	+	asmbl_26501	none	STRG.23001.1,Trinity_GG_29993_c0_g1_i1,blat.proc3825176.chain_186	3	STRG.23001.2	1
scaffold_18	spliced_intron	7661288	7661516	+	asmbl_20764,asmbl_20765,asmbl_20767,asmbl_20768	none	STRG.21471.1,STRG.21471.4,STRG.21471.5,STRG.21471.6	4	STRG.21471.2,STRG.21471.3	2
scaffold_15	ends_in_intron	12033450	12033450	+	asmbl_15516	none	Trinity_GG_27537_c0_g1_i1,blat.proc3825172.chain_3278	2	STRG.18644.1,STRG.18644.2,STRG.18644.3,Trinity_GG_27537_c0_g1_i2,Trinity_GG_27537_c0_g1_i3,Trinity_GG_27537_c0_g1_i4,blat.proc3825172.chain_3276,blat.proc3825172.chain_3277,blat.proc3825172.chain_3279	9
scaffold_15	alt_acceptor	15156180	15156181	+	asmbl_15717,asmbl_15720	none	Trinity_GG_27624_c0_g1_i6,blat.proc3825172.chain_3436,blat.proc3825172.chain_3440	3	STRG.18906.5,Trinity_GG_27624_c0_g1_i8,blat.proc3825172.chain_3438,blat.proc3825172.chain_3439	4
scaffold_4	retained_intron	13183547	13184043	-	asmbl_42982	none	blat.proc3825150.chain_1155	1	STRG.4962.1,STRG.4962.2,STRG.4962.3,blat.proc3825150.chain_1153,blat.proc3825150.chain_1154,blat.proc3825150.chain_1156	6
scaffold_14	skipped_exon	2297643	2298415	+	asmbl_11855	none	STRG.16845.3	1	STRG.16845.1,STRG.16845.2,blat.proc3825172.chain_1545	3
scaffold_14	alt_donor	6283675	6283676	+	asmbl_12056,asmbl_12058	none	STRG.17079.1,STRG.17079.3,blat.proc3825172.chain_1848,blat.proc3825172.chain_1849	4	STRG.17079.2,blat.proc3825172.chain_1853	2
scaffold_11	starts_in_intron	3032159	3032159	-	asmbl_6524	none	blat.proc3825154.chain_2033	1	STRG.13436.1,blat.proc3825154.chain_2032	2
scaffold_14	alt_donor	11639474	11639475	+	asmbl_12396	none	STRG.17500.2	1	STRG.17500.1	1
scaffold_11	retained_intron	8601859	8601985	+	asmbl_5808	none	Trinity_GG_24974_c0_g1_i2,blat.proc3825170.chain_2446	2	STRG.13876.1,STRG.13876.3,Trinity_GG_24974_c0_g1_i3,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2447,blat.proc3825170.chain_2448,blat.proc3825170.chain_2449	7
scaffold_13	alt_donor	12002415	12002416	+	asmbl_11320	none	STRG.16338.1,blat.proc3825172.chain_1140	2	STRG.16338.2,blat.proc3825172.chain_1143	2
scaffold_24	alternate_exon	5950912	5955224	+	asmbl_32251	none	STRG.26675.1,Trinity_GG_32084_c1_g1_i1,blat.proc3825176.chain_3678	3	blat.proc3825176.chain_3679	1
scaffold_6	alt_acceptor	12520974	12520975	-	asmbl_48815,asmbl_48818	none	STRG.8011.2,blat.proc3825152.chain_396	2	STRG.8011.1,STRG.8011.4,blat.proc3825152.chain_397,blat.proc3825152.chain_398	4
scaffold_21	skipped_exon	2950671	2951902	+	asmbl_28428,asmbl_28430	none	STRG.23920.1,STRG.23920.2,blat.proc3825176.chain_1159	3	Trinity_GG_30578_c0_g1_i4,blat.proc3825176.chain_1160	2
scaffold_12	ends_in_intron	9942150	9942150	+	asmbl_7898	none	blat.proc3825170.chain_3501	1	STRG.14966.1,blat.proc3825170.chain_3502	2
scaffold_21	retained_intron	9780293	9781249	+	asmbl_28844	none	STRG.24433.1,Trinity_GG_30833_c0_g1_i2,blat.proc3825176.chain_1604	3	STRG.24433.2	1
scaffold_13	ends_in_intron	8010713	8010713	+	asmbl_11089	none	Trinity_GG_26119_c1_g1_i1,blat.proc3825172.chain_791	2	STRG.16081.1,blat.proc3825172.chain_788	2
scaffold_21	alt_acceptor	11346202	11346203	-	asmbl_28121	none	STRG.24614.1	1	STRG.24614.2,STRG.24614.3,STRG.24614.4	3
scaffold_9	spliced_intron	13368752	13368963	-	asmbl_55443	none	STRG.11644.1,blat.proc3825154.chain_103	2	Trinity_GG_6421_c0_g1_i1,blat.proc3825154.chain_102	2
scaffold_4	retained_exon	9729577	9729732	+	asmbl_41620	none	STRG.4741.1,blat.proc3825166.chain_1201	2	blat.proc3825166.chain_1202	1
scaffold_18	starts_in_intron	8399310	8399310	+	asmbl_20838,asmbl_20839	none	STRG.21513.4,STRG.21513.5	2	STRG.21513.1,STRG.21513.2,STRG.21513.3,blat.proc3825174.chain_2580,blat.proc3825174.chain_2581,blat.proc3825174.chain_2583	6
scaffold_16	starts_in_intron	4094923	4094923	+	asmbl_16175,asmbl_16176	none	Trinity_GG_27809_c0_g1_i8,blat.proc3825174.chain_61	2	STRG.19226.1,STRG.19226.2	2
scaffold_20	spliced_intron	8340131	8340449	-	asmbl_25978,asmbl_25979,asmbl_25980,asmbl_25982,asmbl_25983,asmbl_25985,asmbl_25986	none	STRG.23378.1,STRG.23378.2,STRG.23378.3,Trinity_GG_13065_c0_g1_i10,blat.proc3825160.chain_506,blat.proc3825160.chain_507,blat.proc3825160.chain_508,blat.proc3825160.chain_509,blat.proc3825160.chain_511,blat.proc3825160.chain_512	10	blat.proc3825160.chain_510	1
scaffold_17	retained_intron	477860	478200	-	asmbl_17623	none	blat.proc3825158.chain_925	1	STRG.19894.1,blat.proc3825158.chain_926	2
scaffold_19	retained_exon	13233721	13233855	-	asmbl_22610	none	STRG.22653.1,blat.proc3825158.chain_3425	2	STRG.22653.2,blat.proc3825158.chain_3427	2
scaffold_1	ends_in_intron	11745890	11745890	+	asmbl_2143	none	blat.proc3825164.chain_971	1	STRG.789.1,Trinity_GG_17813_c0_g1_i2,blat.proc3825164.chain_972,blat.proc3825164.chain_973	4
scaffold_612	starts_in_intron	4381	4381	-	asmbl_49462	none	STRG.30400.2	1	STRG.30400.1	1
scaffold_3	alt_acceptor	17834325	17834326	+	asmbl_40698,asmbl_40699,asmbl_40701	none	STRG.3996.1,blat.proc3825166.chain_502,blat.proc3825166.chain_503,blat.proc3825166.chain_505	4	STRG.3996.2	1
scaffold_10	alternate_exon	16252344	16258017	+	asmbl_3707	none	Trinity_GG_24504_c0_g1_i2,blat.proc3825170.chain_1659	2	STRG.13106.4	1
scaffold_5	ends_in_intron	14794517	14794517	-	asmbl_44624	none	blat.proc3825150.chain_2856	1	STRG.6684.1,blat.proc3825150.chain_2854,blat.proc3825150.chain_2855	3
scaffold_15	spliced_intron	13324142	13324642	+	asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15630,asmbl_15634,asmbl_15635,asmbl_15637	none	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3383,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389,blat.proc3825172.chain_3390	10	Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3392	4
scaffold_1	ends_in_intron	9981320	9981320	+	asmbl_1999	none	blat.proc3825164.chain_794	1	STRG.667.1,blat.proc3825164.chain_795	2
scaffold_1	alt_donor	20347167	20347168	+	asmbl_2621	none	STRG.1396.5	1	STRG.1396.1	1
scaffold_23	retained_intron	2163935	2164106	-	asmbl_30701	none	STRG.25690.2	1	STRG.25690.1	1
scaffold_18	alt_donor	3634675	3634676	+	asmbl_20467	none	STRG.21184.2,blat.proc3825174.chain_2122	2	STRG.21184.1,STRG.21184.3,STRG.21184.4,blat.proc3825174.chain_2121,blat.proc3825174.chain_2123	5
scaffold_26	alt_donor	5862691	5862692	+	asmbl_35049	none	STRG.28294.1,blat.proc3825178.chain_1390	2	blat.proc3825178.chain_1391	1
scaffold_11	retained_exon	3558136	3558269	-	asmbl_6550,asmbl_6551	none	STRG.13483.1,blat.proc3825154.chain_2066,blat.proc3825154.chain_2068	3	STRG.13483.2	1
scaffold_28	retained_intron	2810466	2811511	-	asmbl_38089,asmbl_38090,asmbl_38091	none	STRG.29471.4,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	3	STRG.29471.1,blat.proc3825162.chain_2599	2
scaffold_13	spliced_intron	3999070	3999310	-	asmbl_9600,asmbl_9602	none	STRG.15726.1,blat.proc3825156.chain_606,blat.proc3825156.chain_608	3	blat.proc3825156.chain_607	1
scaffold_15	alt_donor	14663329	14663330	+	asmbl_15695	none	STRG.18882.1	1	STRG.18882.2,Trinity_GG_27665_c0_g1_i4,blat.proc3825172.chain_3504	3
scaffold_18	alternate_exon	1390317	1391552	-	asmbl_19616	none	STRG.21025.2,Trinity_GG_11785_c0_g1_i1,blat.proc3825158.chain_1984,blat.proc3825158.chain_2005	4	STRG.21025.4,blat.proc3825158.chain_2003	2
scaffold_6	retained_intron	5021998	5022641	-	asmbl_48385	none	STRG.7480.1,Trinity_GG_4207_c0_g1_i2,Trinity_GG_4207_c0_g1_i5,blat.proc3825150.chain_3612,blat.proc3825150.chain_3613	5	STRG.7480.2	1
scaffold_12	starts_in_intron	14043838	14043838	+	asmbl_8047	none	Trinity_GG_25692_c0_g1_i1,blat.proc3825170.chain_3717	2	Trinity_GG_25692_c0_g1_i2,blat.proc3825170.chain_3716	2
scaffold_5	alt_acceptor	8414763	8414764	+	asmbl_45550,asmbl_45551	none	STRG.6187.2,blat.proc3825166.chain_2307	2	STRG.6187.3,blat.proc3825166.chain_2306	2
scaffold_21	starts_in_intron	2948027	2948027	-	asmbl_27492	none	STRG.23917.2,blat.proc3825160.chain_984	2	STRG.23917.1,blat.proc3825160.chain_985,blat.proc3825160.chain_986	3
scaffold_8	retained_intron	9903716	9903809	-	asmbl_52065	none	Trinity_GG_5719_c0_g1_i4,blat.proc3825152.chain_2523	2	STRG.10243.1,STRG.10243.2,Trinity_GG_5719_c0_g1_i2,blat.proc3825152.chain_2525,blat.proc3825152.chain_2526,blat.proc3825152.chain_2527	6
scaffold_2	spliced_intron	13063387	13063523	+	asmbl_24811,asmbl_24813,asmbl_24815	none	STRG.2332.1,STRG.2332.2,blat.proc3825164.chain_2495,blat.proc3825164.chain_2497,blat.proc3825164.chain_2500,blat.proc3825164.chain_2502	6	blat.proc3825164.chain_2494,blat.proc3825164.chain_2496,blat.proc3825164.chain_2498	3
scaffold_25	retained_intron	6038950	6039040	-	asmbl_34312	none	blat.proc3825162.chain_866	1	STRG.27484.1,STRG.27484.2,blat.proc3825162.chain_864,blat.proc3825162.chain_865	4
scaffold_21	starts_in_intron	3120201	3120201	+	asmbl_28447	none	blat.proc3825176.chain_1171	1	STRG.23942.2	1
scaffold_13	starts_in_intron	4076589	4076589	+	asmbl_10757	none	Trinity_GG_25948_c1_g2_i1,blat.proc3825172.chain_459	2	STRG.15729.1,STRG.15729.2,blat.proc3825172.chain_457,blat.proc3825172.chain_458	4
scaffold_15	alt_acceptor	12304560	12304561	+	asmbl_15551	none	STRG.18679.1,Trinity_GG_27555_c0_g1_i2,blat.proc3825172.chain_3304	3	STRG.18679.2,Trinity_GG_27555_c0_g1_i1,blat.proc3825172.chain_3303	3
scaffold_6	alt_acceptor	9098570	9098571	+	asmbl_47202	none	STRG.7789.1,blat.proc3825168.chain_248	2	STRG.7789.2,STRG.7789.3	2
scaffold_24	spliced_intron	8992308	8992351	+	asmbl_32476	none	STRG.26923.2	1	STRG.26923.1,Trinity_GG_32198_c0_g1_i2,blat.proc3825178.chain_120	3
scaffold_1	spliced_intron	18322459	18322534	+	asmbl_2548	none	STRG.1285.1	1	STRG.1285.2,blat.proc3825164.chain_1356,blat.proc3825164.chain_1357	3
scaffold_17	alt_acceptor	1365684	1365685	+	asmbl_18605	none	STRG.19977.1	1	STRG.19977.2	1
scaffold_13	spliced_intron	534811	534931	-	asmbl_9358,asmbl_9360	none	STRG.15447.1,Trinity_GG_8674_c0_g1_i1,Trinity_GG_8674_c0_g1_i2,blat.proc3825156.chain_326,blat.proc3825156.chain_327	5	Trinity_GG_8674_c0_g1_i6,blat.proc3825156.chain_328	2
scaffold_13	retained_intron	8163692	8164029	-	asmbl_9941	none	blat.proc3825156.chain_988	1	STRG.16109.1,blat.proc3825156.chain_989	2
scaffold_4	spliced_intron	14648429	14648648	-	asmbl_43062,asmbl_43063	none	STRG.5090.1,STRG.5090.2,blat.proc3825150.chain_1237,blat.proc3825150.chain_1238	4	STRG.5090.3,blat.proc3825150.chain_1236	2
scaffold_3	starts_in_intron	13716453	13716453	+	asmbl_40455	none	Trinity_GG_19391_c1_g1_i1,blat.proc3825166.chain_202	2	STRG.3715.1,Trinity_GG_19391_c0_g1_i1,blat.proc3825166.chain_201	3
scaffold_7	starts_in_intron	18617242	18617242	-	asmbl_51486	none	STRG.9681.3	1	STRG.9681.1,STRG.9681.2,STRG.9681.4,STRG.9681.5,blat.proc3825152.chain_2027,blat.proc3825152.chain_2028,blat.proc3825152.chain_2029	7
scaffold_7	alt_donor	6042945	6042946	-	asmbl_50909	none	STRG.8910.5,Trinity_GG_5061_c0_g1_i9,blat.proc3825152.chain_1343,blat.proc3825152.chain_1349	4	STRG.8910.2,STRG.8910.3,STRG.8910.4,blat.proc3825152.chain_1341,blat.proc3825152.chain_1342,blat.proc3825152.chain_1344	6
scaffold_13	spliced_intron	4457659	4457733	+	asmbl_10793,asmbl_10794,asmbl_10796,asmbl_10797	none	STRG.15770.1,STRG.15770.2,STRG.15770.3,STRG.15770.4,Trinity_GG_25976_c0_g2_i2,blat.proc3825172.chain_507,blat.proc3825172.chain_509,blat.proc3825172.chain_511	8	Trinity_GG_25976_c0_g2_i1,blat.proc3825172.chain_506	2
scaffold_16	alt_acceptor	10441847	10441848	+	asmbl_16532	none	STRG.19615.2	1	STRG.19615.1,Trinity_GG_28034_c0_g1_i1,Trinity_GG_28034_c0_g1_i2,blat.proc3825174.chain_498	4
scaffold_28	alternate_exon	2640000	2640104	+	asmbl_37390,asmbl_37391	none	STRG.29439.2,STRG.29439.3,Trinity_GG_33632_c0_g1_i1,Trinity_GG_33632_c0_g1_i3,blat.proc3825178.chain_2615,blat.proc3825178.chain_2616	6	STRG.29439.1,blat.proc3825178.chain_2614	2
scaffold_6	alt_acceptor	14197731	14197732	+	asmbl_47592	none	STRG.8185.2,blat.proc3825168.chain_613	2	STRG.8185.1,Trinity_GG_21766_c0_g1_i4,blat.proc3825168.chain_610,blat.proc3825168.chain_611	4
scaffold_5	starts_in_intron	2670502	2670502	-	asmbl_43895	none	STRG.5796.1	1	STRG.5796.2,STRG.5796.3,STRG.5796.5,blat.proc3825150.chain_1947,blat.proc3825150.chain_1949	5
scaffold_13	retained_intron	4457825	4458511	+	asmbl_10793,asmbl_10794	none	STRG.15770.2,STRG.15770.4,Trinity_GG_25976_c0_g1_i2,Trinity_GG_25976_c0_g2_i2,blat.proc3825172.chain_507,blat.proc3825172.chain_508	6	STRG.15770.1,blat.proc3825172.chain_509	2
scaffold_16	alt_donor	1123843	1123844	-	asmbl_16926	none	STRG.19077.1	1	STRG.19077.2,blat.proc3825158.chain_236	2
scaffold_4	spliced_intron	13590208	13590355	+	asmbl_41803	none	STRG.4984.2,blat.proc3825166.chain_1390	2	STRG.4984.1,Trinity_GG_20083_c0_g1_i3,blat.proc3825166.chain_1391,blat.proc3825166.chain_1392	4
scaffold_12	skipped_exon	7222058	7223211	+	asmbl_7727	none	STRG.14792.2,blat.proc3825170.chain_3256	2	STRG.14792.1,blat.proc3825170.chain_3254	2
scaffold_7	retained_intron	8507767	8508686	+	asmbl_50004,asmbl_50005	none	STRG.9078.2,blat.proc3825168.chain_1605	2	STRG.9078.3,blat.proc3825168.chain_1607,blat.proc3825168.chain_1609	3
scaffold_4	alt_donor	3528470	3528471	-	asmbl_42450	none	STRG.4289.5	1	STRG.4289.3	1
scaffold_4	starts_in_intron	2739614	2739614	-	asmbl_42402	none	blat.proc3825150.chain_402	1	STRG.4238.1,blat.proc3825150.chain_403,blat.proc3825150.chain_404	3
scaffold_12	alternate_exon	5636449	5637491	-	asmbl_8518	none	Trinity_GG_8225_c0_g1_i1,blat.proc3825154.chain_3253	2	STRG.14715.2,blat.proc3825154.chain_3251	2
scaffold_6	alt_donor	4383271	4383272	-	asmbl_48313	none	STRG.7413.1,blat.proc3825150.chain_3513	2	STRG.7413.2	1
scaffold_13	spliced_intron	3021498	3021692	-	asmbl_9504	none	STRG.15603.2,blat.proc3825156.chain_503	2	STRG.15603.1	1
scaffold_18	alternate_exon	9789207	9789346	+	asmbl_20891	none	STRG.21586.3,blat.proc3825174.chain_2555	2	STRG.21586.2,blat.proc3825174.chain_2556	2
scaffold_2	alternate_exon	7783101	7784953	+	asmbl_24571,asmbl_24573	none	STRG.2075.2,STRG.2075.3,Trinity_GG_18484_c0_g1_i4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2229,blat.proc3825164.chain_2231	6	STRG.2075.1,blat.proc3825164.chain_2228,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	4
scaffold_8	alternate_exon	14431109	14431522	+	asmbl_53374	none	STRG.10530.2	1	STRG.10530.1,blat.proc3825168.chain_3099,blat.proc3825168.chain_3100	3
scaffold_15	ends_in_intron	5143810	5143810	+	asmbl_15190	none	STRG.18222.2,blat.proc3825172.chain_2884	2	STRG.18222.1,blat.proc3825172.chain_2885,blat.proc3825172.chain_2886,blat.proc3825172.chain_2887	4
scaffold_8	retained_intron	12693374	12693431	+	asmbl_53332	none	blat.proc3825168.chain_3010	1	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3009	3
scaffold_1	starts_in_intron	2129979	2129979	+	asmbl_1538	none	blat.proc3825164.chain_258	1	STRG.147.1,STRG.147.2,STRG.147.3,blat.proc3825164.chain_255,blat.proc3825164.chain_256,blat.proc3825164.chain_257	6
scaffold_1	alternate_exon	14365199	14365238	-	asmbl_909	none	STRG.1037.3	1	STRG.1037.1,blat.proc3825148.chain_1032,blat.proc3825148.chain_1035	3
scaffold_11	alt_donor	17366459	17366460	-	asmbl_7266	none	blat.proc3825154.chain_2893	1	STRG.14404.1,blat.proc3825154.chain_2892	2
scaffold_18	alternate_exon	2004770	2014079	-	asmbl_19684	none	STRG.21105.3,STRG.21105.4,Trinity_GG_11835_c2_g1_i1,blat.proc3825158.chain_2089,blat.proc3825158.chain_2092	5	STRG.21105.1,blat.proc3825158.chain_2090	2
scaffold_8	skipped_exon	11110746	11111142	+	asmbl_53196	none	STRG.10324.1,blat.proc3825168.chain_2894	2	STRG.10324.3,blat.proc3825168.chain_2896	2
scaffold_20	alt_acceptor	8339140	8339141	-	asmbl_25978,asmbl_25979,asmbl_25982,asmbl_25983,asmbl_25984,asmbl_25985,asmbl_25986	none	STRG.23378.1,STRG.23378.2,STRG.23378.3,blat.proc3825160.chain_506,blat.proc3825160.chain_507,blat.proc3825160.chain_508,blat.proc3825160.chain_509,blat.proc3825160.chain_510,blat.proc3825160.chain_512	9	Trinity_GG_13065_c0_g1_i10,blat.proc3825160.chain_511	2
scaffold_16	skipped_exon	10156837	10157265	-	asmbl_17307	none	STRG.19603.3	1	STRG.19603.1,STRG.19603.2,blat.proc3825158.chain_710	3
scaffold_3	ends_in_intron	15741069	15741069	-	asmbl_39441	none	Trinity_GG_2086_c2_g1_i1,blat.proc3825148.chain_3709	2	STRG.3851.1,STRG.3851.2,STRG.3851.3,blat.proc3825148.chain_3704,blat.proc3825148.chain_3706,blat.proc3825148.chain_3707	6
scaffold_1445	spliced_intron	333	442	+	asmbl_13886	none	STRG.30605.2	1	STRG.30605.1,Trinity_GG_34223_c0_g1_i1,blat.proc3825178.chain_3604	3
scaffold_14	starts_in_intron	209121	209121	-	asmbl_12797	none	STRG.16713.4,Trinity_GG_9359_c0_g2_i4,blat.proc3825156.chain_1539	3	STRG.16713.1,STRG.16713.2,Trinity_GG_9359_c0_g2_i2,Trinity_GG_9359_c0_g2_i3,Trinity_GG_9359_c0_g2_i5,blat.proc3825156.chain_1536,blat.proc3825156.chain_1537,blat.proc3825156.chain_1538	8
scaffold_9	alt_donor	17470141	17470142	-	asmbl_55649	none	STRG.11840.2	1	STRG.11840.3,blat.proc3825154.chain_346	2
scaffold_22	skipped_exon	10684729	10685515	-	asmbl_29617	none	blat.proc3825160.chain_2610	1	STRG.25415.1,STRG.25415.2,STRG.25415.3	3
scaffold_6	spliced_intron	12034964	12035191	-	asmbl_48780	none	STRG.7975.1,blat.proc3825152.chain_364	2	STRG.7975.2,blat.proc3825152.chain_365	2
scaffold_22	spliced_intron	900648	900742	+	asmbl_29897	none	Trinity_GG_30991_c0_g1_i2,blat.proc3825176.chain_1870	2	Trinity_GG_30991_c0_g1_i3,blat.proc3825176.chain_1872	2
scaffold_15	skipped_exon	4230907	4231387	+	asmbl_15128,asmbl_15131,asmbl_15133,asmbl_15134	none	STRG.18172.1,blat.proc3825172.chain_2837,blat.proc3825172.chain_2840,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842	5	STRG.18172.2,Trinity_GG_27280_c0_g1_i5,blat.proc3825172.chain_2838,blat.proc3825172.chain_2839,blat.proc3825172.chain_2843	5
scaffold_4	alt_donor	15027392	15027393	-	asmbl_43086	none	STRG.5112.2	1	STRG.5112.1,blat.proc3825150.chain_1251	2
scaffold_20	skipped_exon	10249203	10249538	-	asmbl_26096	none	STRG.23572.2,blat.proc3825160.chain_664	2	STRG.23572.1,blat.proc3825160.chain_660,blat.proc3825160.chain_663	3
scaffold_7	alt_acceptor	18347452	18347453	-	asmbl_51458	none	STRG.9663.1	1	STRG.9663.2,STRG.9663.3	2
scaffold_13	starts_in_intron	2861884	2861884	-	asmbl_9484	none	blat.proc3825156.chain_479	1	STRG.15589.1,blat.proc3825156.chain_476,blat.proc3825156.chain_478	3
scaffold_3	alt_donor	7216567	7216568	-	asmbl_38956	none	STRG.3326.1,blat.proc3825148.chain_3185	2	STRG.3326.2,blat.proc3825148.chain_3186,blat.proc3825148.chain_3187	3
scaffold_3	spliced_intron	5951813	5951900	-	asmbl_38878,asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38882,asmbl_38883,asmbl_38884,asmbl_38887	none	STRG.3259.1,STRG.3259.2,STRG.3259.3,STRG.3259.4,STRG.3259.5,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3161,blat.proc3825148.chain_3162,blat.proc3825148.chain_3165	10	blat.proc3825148.chain_3163,blat.proc3825148.chain_3164	2
scaffold_21	retained_intron	1861553	1861668	-	asmbl_27426	none	blat.proc3825160.chain_952	1	STRG.23827.1,blat.proc3825160.chain_953	2
scaffold_13	ends_in_intron	7106189	7106189	+	asmbl_11012	none	Trinity_GG_26113_c0_g1_i11	1	STRG.16010.1,STRG.16010.2,blat.proc3825172.chain_778	3
scaffold_2	spliced_intron	888918	889046	+	asmbl_24131,asmbl_24134	none	STRG.1565.5,blat.proc3825164.chain_1715	2	STRG.1565.1,STRG.1565.2,STRG.1565.3,STRG.1565.4,Trinity_GG_18210_c1_g1_i3,blat.proc3825164.chain_1713	6
scaffold_2	spliced_intron	4579215	4579828	+	asmbl_24358,asmbl_24365,asmbl_24366	none	STRG.1886.1,STRG.1886.2,STRG.1886.3,blat.proc3825164.chain_1980	4	Trinity_GG_18341_c1_g1_i4,blat.proc3825164.chain_1977,blat.proc3825164.chain_1979	3
scaffold_11	alternate_exon	4772001	4772166	-	asmbl_6635	none	STRG.13571.1,blat.proc3825154.chain_2168	2	STRG.13571.2	1
scaffold_10	alt_acceptor	1976634	1976635	-	asmbl_4089	none	STRG.12049.3	1	STRG.12049.1,blat.proc3825154.chain_607	2
scaffold_3	ends_in_intron	6833167	6833167	+	asmbl_40140	none	STRG.3309.2	1	STRG.3309.1,blat.proc3825164.chain_3583	2
scaffold_10	alt_acceptor	5685235	5685236	+	asmbl_3192	none	STRG.12396.2	1	STRG.12396.1,STRG.12396.3,blat.proc3825170.chain_1001	3
scaffold_15	alt_acceptor	11492014	11492015	-	asmbl_14519	none	STRG.18613.2	1	STRG.18613.1,blat.proc3825156.chain_3487	2
scaffold_8	ends_in_intron	12976925	12976925	-	asmbl_52262	none	blat.proc3825152.chain_2681	1	STRG.10478.1,blat.proc3825152.chain_2682	2
scaffold_15	spliced_intron	9819517	9819607	+	asmbl_15417,asmbl_15420	none	STRG.18497.1,blat.proc3825172.chain_3080,blat.proc3825172.chain_3081	3	STRG.18497.2,STRG.18497.3,Trinity_GG_27412_c0_g1_i2,blat.proc3825172.chain_3082,blat.proc3825172.chain_3084	5
scaffold_15	alt_acceptor	12106784	12106785	+	asmbl_15537	none	blat.proc3825172.chain_3296	1	STRG.18668.1,STRG.18668.2	2
scaffold_5	retained_intron	7770850	7770942	+	asmbl_45513	none	STRG.6159.1	1	STRG.6159.2	1
scaffold_10	skipped_exon	5177142	5178792	+	asmbl_3147,asmbl_3149	none	STRG.12343.3,blat.proc3825170.chain_991	2	STRG.12343.1,blat.proc3825170.chain_988,blat.proc3825170.chain_990	3
scaffold_23	spliced_intron	2016514	2016841	-	asmbl_30683	none	blat.proc3825160.chain_2799	1	STRG.25673.1,blat.proc3825160.chain_2798	2
scaffold_19	retained_intron	11484684	11484870	-	asmbl_22407,asmbl_22413	none	Trinity_GG_12512_c0_g1_i4,blat.proc3825158.chain_3239,blat.proc3825158.chain_3248	3	STRG.22486.1,STRG.22486.2,Trinity_GG_12512_c0_g1_i13,blat.proc3825158.chain_3240,blat.proc3825158.chain_3241,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247	7
scaffold_7	retained_intron	3954085	3954301	-	asmbl_50832,asmbl_50833,asmbl_50836,asmbl_50837,asmbl_50839	none	blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1231,blat.proc3825152.chain_1233,blat.proc3825152.chain_1236	5	STRG.8794.1,STRG.8794.2,blat.proc3825152.chain_1228,blat.proc3825152.chain_1229,blat.proc3825152.chain_1230,blat.proc3825152.chain_1232,blat.proc3825152.chain_1235	7
scaffold_16	alt_donor	6186126	6186127	+	asmbl_16287	none	STRG.19353.1,Trinity_GG_27895_c0_g1_i1,blat.proc3825174.chain_246	3	STRG.19353.2	1
scaffold_27	alt_acceptor	3145195	3145196	+	asmbl_36193	none	STRG.28806.1,blat.proc3825178.chain_1959	2	STRG.28806.2,blat.proc3825178.chain_1958	2
scaffold_5	alt_donor	6664249	6664250	-	asmbl_44128,asmbl_44129	none	STRG.6073.1,STRG.6073.2	2	STRG.6073.3	1
scaffold_9	alt_acceptor	5085765	5085766	+	asmbl_53989,asmbl_53992	none	STRG.11088.1,STRG.11088.4	2	STRG.11088.2,STRG.11088.3	2
scaffold_5	spliced_intron	14262861	14263018	+	asmbl_45914,asmbl_45916,asmbl_45917,asmbl_45920,asmbl_45921	none	STRG.6638.1,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2792	6	blat.proc3825166.chain_2789,blat.proc3825166.chain_2790,blat.proc3825166.chain_2791	3
scaffold_3	spliced_intron	192086	192185	+	asmbl_39810	none	STRG.2892.1	1	Trinity_GG_18954_c0_g1_i2,blat.proc3825164.chain_3146,blat.proc3825164.chain_3147	3
scaffold_8	alt_acceptor	8882508	8882509	-	asmbl_51977	none	blat.proc3825152.chain_2396	1	STRG.10140.1,blat.proc3825152.chain_2397	2
scaffold_18	starts_in_intron	646196	646196	+	asmbl_20316	none	Trinity_GG_28827_c0_g1_i5,blat.proc3825174.chain_1858	2	STRG.21005.1,STRG.21005.2,Trinity_GG_28827_c0_g1_i2,Trinity_GG_28827_c0_g1_i6,blat.proc3825174.chain_1855,blat.proc3825174.chain_1856	6
scaffold_2	retained_intron	7324810	7325889	+	asmbl_24562	none	STRG.2062.1,Trinity_GG_18498_c0_g1_i4,blat.proc3825164.chain_2280	3	STRG.2062.3,Trinity_GG_18498_c0_g1_i1,blat.proc3825164.chain_2279	3
scaffold_10	starts_in_intron	5396207	5396207	-	asmbl_4358,asmbl_4361	none	STRG.12366.2,blat.proc3825154.chain_932	2	STRG.12366.1,blat.proc3825154.chain_933	2
scaffold_9	retained_intron	16664696	16664923	-	asmbl_55610	none	blat.proc3825154.chain_187	1	STRG.11805.2,blat.proc3825154.chain_185	2
scaffold_2	alt_acceptor	20327888	20327889	-	asmbl_23895	none	STRG.2879.1,blat.proc3825148.chain_2762	2	STRG.2879.2	1
scaffold_6	ends_in_intron	8560975	8560975	-	asmbl_48569	none	blat.proc3825152.chain_26	1	STRG.7737.1,STRG.7737.2,blat.proc3825152.chain_25	3
scaffold_28	alt_acceptor	5391168	5391169	+	asmbl_37586	none	Trinity_GG_33768_c0_g1_i3,blat.proc3825178.chain_2868	2	blat.proc3825178.chain_2870	1
scaffold_1	alt_donor	5192251	5192252	-	asmbl_240	none	STRG.325.2	1	STRG.325.1,blat.proc3825148.chain_302	2
scaffold_22	alt_donor	10320402	10320403	+	asmbl_30356	none	blat.proc3825176.chain_2361	1	STRG.25386.1,STRG.25386.2,blat.proc3825176.chain_2362	3
scaffold_5	retained_intron	18255195	18255273	+	asmbl_46228	none	Trinity_GG_21150_c0_g1_i4,blat.proc3825166.chain_3198	2	STRG.6961.1,Trinity_GG_21150_c0_g1_i1,blat.proc3825166.chain_3197	3
scaffold_12	ends_in_intron	9667660	9667660	+	asmbl_7868	none	blat.proc3825170.chain_3435	1	STRG.14944.1,STRG.14944.2,Trinity_GG_25536_c0_g1_i1,Trinity_GG_25536_c0_g1_i3,blat.proc3825170.chain_3434,blat.proc3825170.chain_3436	6
scaffold_8	retained_exon	10239507	10239563	+	asmbl_53162,asmbl_53167	none	STRG.10282.1,blat.proc3825168.chain_2729,blat.proc3825168.chain_2731	3	STRG.10282.2,blat.proc3825168.chain_2733	2
scaffold_5	starts_in_intron	4651649	4651649	-	asmbl_43975	none	blat.proc3825150.chain_2117	1	STRG.5919.1,blat.proc3825150.chain_2116	2
scaffold_23	alt_acceptor	1606072	1606073	+	asmbl_31346,asmbl_31348	none	STRG.25640.1,blat.proc3825176.chain_2613,blat.proc3825176.chain_2614	3	blat.proc3825176.chain_2615	1
scaffold_27	starts_in_intron	5051007	5051007	-	asmbl_36981,asmbl_36982	none	STRG.28938.1,STRG.28938.4	2	STRG.28938.5	1
scaffold_10	ends_in_intron	13780237	13780237	+	asmbl_3622	none	blat.proc3825170.chain_1565	1	STRG.12979.1,STRG.12979.2,STRG.12979.3	3
scaffold_17	starts_in_intron	14349855	14349855	-	asmbl_18424,asmbl_18426	none	STRG.20914.2,blat.proc3825158.chain_1890,blat.proc3825158.chain_1893	3	STRG.20914.1,blat.proc3825158.chain_1891,blat.proc3825158.chain_1892	3
scaffold_24	starts_in_intron	1953821	1953821	-	asmbl_32760	none	blat.proc3825160.chain_3545	1	STRG.26428.1,blat.proc3825160.chain_3547	2
scaffold_26	alternate_exon	2959442	2960899	-	asmbl_35463	none	blat.proc3825162.chain_1300	1	STRG.27989.5,Trinity_GG_15696_c1_g1_i1,blat.proc3825162.chain_1302	3
scaffold_12	starts_in_intron	14962548	14962548	-	asmbl_9019	none	Trinity_GG_8560_c0_g1_i2,blat.proc3825156.chain_103	2	STRG.15289.1,blat.proc3825156.chain_102	2
scaffold_12	spliced_intron	16399852	16401681	+	asmbl_8173,asmbl_8174	none	STRG.15402.4,Trinity_GG_25733_c0_g1_i9,blat.proc3825172.chain_42	3	STRG.15402.1,STRG.15402.3,STRG.15402.5,STRG.15402.6,Trinity_GG_25733_c0_g1_i10,Trinity_GG_25733_c0_g1_i11,Trinity_GG_25733_c0_g1_i13,blat.proc3825172.chain_40,blat.proc3825172.chain_46,blat.proc3825172.chain_47,blat.proc3825172.chain_48	11
scaffold_19	alternate_exon	12134403	12134501	+	asmbl_21755	none	STRG.22544.1,Trinity_GG_29790_c1_g1_i2,blat.proc3825174.chain_3580	3	STRG.22544.2,Trinity_GG_29790_c1_g1_i5,blat.proc3825174.chain_3582	3
scaffold_16	spliced_intron	5394585	5394936	+	asmbl_16211,asmbl_16213	none	STRG.19288.1,Trinity_GG_27867_c0_g1_i3,blat.proc3825174.chain_180,blat.proc3825174.chain_181	4	blat.proc3825174.chain_183	1
scaffold_17	alternate_exon	10024570	10030323	+	asmbl_19156	none	STRG.20619.1	1	STRG.20619.2,STRG.20619.3	2
scaffold_1	retained_intron	20506233	20506257	-	asmbl_1185	none	STRG.1406.1	1	STRG.1406.2	1
scaffold_27	starts_in_intron	2880372	2880372	+	asmbl_36146	none	blat.proc3825178.chain_1938	1	STRG.28771.1,STRG.28771.2,STRG.28771.3,blat.proc3825178.chain_1939,blat.proc3825178.chain_1940,blat.proc3825178.chain_1941	6
scaffold_13	retained_intron	2637243	2637508	+	asmbl_10630	none	STRG.15562.2,Trinity_GG_25823_c0_g1_i2,blat.proc3825172.chain_214	3	STRG.15562.1,Trinity_GG_25823_c0_g1_i1,blat.proc3825172.chain_213	3
scaffold_1	alt_donor	13930079	13930080	-	asmbl_865	none	STRG.1001.1	1	STRG.1001.2	1
scaffold_4	retained_exon	19587419	19587593	-	asmbl_43453	none	STRG.5543.2,blat.proc3825150.chain_1740	2	STRG.5543.3,STRG.5543.4,blat.proc3825150.chain_1742	3
scaffold_8	starts_in_intron	11272893	11272893	+	asmbl_53213	none	STRG.10346.2	1	STRG.10346.1,Trinity_GG_23069_c0_g1_i1,blat.proc3825168.chain_2911	3
scaffold_3	spliced_intron	5926294	5926496	-	asmbl_38872,asmbl_38873,asmbl_38874	none	STRG.3252.1,blat.proc3825148.chain_3097,blat.proc3825148.chain_3098,blat.proc3825148.chain_3099	4	blat.proc3825148.chain_3100	1
scaffold_4	alt_donor	16665781	16665782	+	asmbl_41996	none	STRG.5253.1,blat.proc3825166.chain_1611	2	STRG.5253.2,blat.proc3825166.chain_1610	2
scaffold_5	retained_intron	11991739	11992075	-	asmbl_44431,asmbl_44432,asmbl_44435	none	STRG.6453.2,STRG.6453.5,blat.proc3825150.chain_2615	3	STRG.6453.4,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	3
scaffold_24	alternate_exon	164343	165305	-	asmbl_32697	none	STRG.26320.1	1	STRG.26320.2,Trinity_GG_14715_c0_g1_i1,Trinity_GG_14715_c0_g1_i3,blat.proc3825160.chain_3447,blat.proc3825160.chain_3448	5
scaffold_8	retained_intron	4852233	4852322	+	asmbl_52860,asmbl_52863	none	Trinity_GG_22856_c0_g1_i6,blat.proc3825168.chain_2524,blat.proc3825168.chain_2526	3	STRG.9951.1,STRG.9951.2,blat.proc3825168.chain_2523,blat.proc3825168.chain_2528	4
scaffold_17	retained_exon	4186961	4187913	-	asmbl_17841	none	STRG.20171.1,blat.proc3825158.chain_1219	2	blat.proc3825158.chain_1220	1
scaffold_4	alternate_exon	12936219	12936326	-	asmbl_42959	none	STRG.4938.1,blat.proc3825150.chain_1052	2	STRG.4938.2,blat.proc3825150.chain_1051	2
scaffold_21	retained_exon	58223	58306	-	asmbl_27272,asmbl_27273	none	STRG.23720.1,STRG.23720.3,blat.proc3825160.chain_829,blat.proc3825160.chain_830	4	STRG.23720.2,blat.proc3825160.chain_828	2
scaffold_18	spliced_intron	2148780	2149152	-	asmbl_19709,asmbl_19710	none	STRG.21114.2,STRG.21114.3,blat.proc3825158.chain_2088	3	STRG.21114.1,Trinity_GG_11834_c0_g1_i1,blat.proc3825158.chain_2087	3
scaffold_8	alt_acceptor	17362678	17362679	-	asmbl_52453	none	STRG.10659.1,blat.proc3825152.chain_2908	2	STRG.10659.2,blat.proc3825152.chain_2907	2
scaffold_3	spliced_intron	6659860	6660509	+	asmbl_40105	none	blat.proc3825164.chain_3568	1	STRG.3295.3,Trinity_GG_19180_c0_g1_i4,blat.proc3825164.chain_3561,blat.proc3825164.chain_3564,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3570,blat.proc3825164.chain_3571	8
scaffold_1	alt_acceptor	6817609	6817610	-	asmbl_378	none	STRG.472.1	1	blat.proc3825148.chain_461	1
scaffold_1	skipped_exon	12334369	12335043	-	asmbl_711,asmbl_712,asmbl_713	none	blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839	3	STRG.849.1,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	8
scaffold_18	retained_exon	7229478	7229525	+	asmbl_20722,asmbl_20723	none	STRG.21429.1,STRG.21429.2,blat.proc3825174.chain_2443,blat.proc3825174.chain_2444,blat.proc3825174.chain_2445	5	STRG.21429.3,blat.proc3825174.chain_2442	2
scaffold_1	retained_intron	11626819	11626939	-	asmbl_649	none	blat.proc3825148.chain_723	1	STRG.769.1,Trinity_GG_386_c0_g1_i1,Trinity_GG_386_c0_g1_i7,blat.proc3825148.chain_719,blat.proc3825148.chain_721,blat.proc3825148.chain_722	6
scaffold_13	alt_donor	6415710	6415711	+	asmbl_10935	none	STRG.15931.2	1	STRG.15931.1	1
scaffold_18	alt_acceptor	3634975	3634976	+	asmbl_20465,asmbl_20466,asmbl_20467	none	STRG.21184.1,STRG.21184.2,STRG.21184.3,blat.proc3825174.chain_2121,blat.proc3825174.chain_2122,blat.proc3825174.chain_2123	6	STRG.21184.4	1
scaffold_15	starts_in_intron	9640416	9640416	-	asmbl_14389	none	blat.proc3825156.chain_3261	1	Trinity_GG_10347_c2_g1_i7	1
scaffold_13	retained_exon	4458512	4458560	+	asmbl_10796	none	STRG.15770.1,blat.proc3825172.chain_509	2	STRG.15770.3,blat.proc3825172.chain_511	2
scaffold_15	retained_intron	14891299	14891623	+	asmbl_15707,asmbl_15708	none	STRG.18902.1,blat.proc3825172.chain_3434,blat.proc3825172.chain_3435	3	STRG.18902.2,Trinity_GG_27623_c0_g1_i3,blat.proc3825172.chain_3432	3
scaffold_27	spliced_intron	158035	158158	-	asmbl_36650,asmbl_36651	none	STRG.28549.1,STRG.28549.3,blat.proc3825162.chain_1774	3	STRG.28549.2,Trinity_GG_15970_c0_g1_i3,blat.proc3825162.chain_1775	3
scaffold_24	ends_in_intron	8865338	8865338	+	asmbl_32452	none	blat.proc3825178.chain_12	1	STRG.26908.1,blat.proc3825178.chain_14	2
scaffold_16	starts_in_intron	11737023	11737023	-	asmbl_17362	none	Trinity_GG_11018_c0_g1_i2	1	STRG.19692.1,blat.proc3825158.chain_734	2
scaffold_3	retained_intron	13988445	13988538	+	asmbl_40475,asmbl_40476,asmbl_40477,asmbl_40483	none	STRG.3744.1,STRG.3744.2,STRG.3744.3,STRG.3744.5,blat.proc3825166.chain_189,blat.proc3825166.chain_191	6	STRG.3744.4	1
scaffold_3	starts_in_intron	17852879	17852879	+	asmbl_40710	none	blat.proc3825166.chain_454	1	blat.proc3825166.chain_453	1
scaffold_5	retained_intron	9086017	9086102	+	asmbl_45604	none	blat.proc3825166.chain_2481	1	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479	6
scaffold_3	ends_in_intron	13176922	13176922	+	asmbl_40435	none	STRG.3682.2	1	blat.proc3825166.chain_165,blat.proc3825166.chain_166	2
scaffold_2	spliced_intron	4599512	4599633	+	asmbl_24369	none	STRG.1885.1,blat.proc3825164.chain_1944	2	STRG.1885.2	1
scaffold_10	starts_in_intron	11971113	11971113	+	asmbl_3511	none	Trinity_GG_24389_c0_g1_i11,blat.proc3825170.chain_1446	2	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.6	4
scaffold_12	retained_exon	3329360	3330742	+	asmbl_7546,asmbl_7549,asmbl_7550	none	STRG.14555.1,STRG.14555.3,STRG.14555.5,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i3,blat.proc3825170.chain_3112	6	STRG.14555.4	1
scaffold_5	skipped_exon	15044032	15044293	-	asmbl_44633	none	STRG.6698.6	1	STRG.6698.2,STRG.6698.4,STRG.6698.5,Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2827	5
scaffold_22	alt_donor	7968284	7968285	+	asmbl_30246	none	STRG.25150.2	1	STRG.25150.1,blat.proc3825176.chain_2271	2
scaffold_28	alt_acceptor	3391740	3391741	+	asmbl_37480,asmbl_37481	none	STRG.29559.1,STRG.29559.2	2	STRG.29559.3	1
scaffold_4	alt_donor	12544247	12544248	-	asmbl_42923	none	STRG.4891.1,blat.proc3825150.chain_1081,blat.proc3825150.chain_1083	3	blat.proc3825150.chain_1082	1
scaffold_28	ends_in_intron	56490	56490	-	asmbl_37887	none	blat.proc3825162.chain_2401	1	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2400,blat.proc3825162.chain_2402	4
scaffold_5	spliced_intron	14263100	14263469	+	asmbl_45914,asmbl_45916,asmbl_45917,asmbl_45920,asmbl_45921	none	STRG.6638.1,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2792	6	blat.proc3825166.chain_2789,blat.proc3825166.chain_2790,blat.proc3825166.chain_2791	3
scaffold_22	ends_in_intron	10320730	10320730	+	asmbl_30355	none	blat.proc3825176.chain_2362	1	STRG.25386.1	1
scaffold_5	alt_acceptor	14205738	14205739	-	asmbl_44593	none	STRG.6632.2	1	STRG.6632.1	1
scaffold_18	spliced_intron	8372775	8373987	-	asmbl_20001,asmbl_20002	none	STRG.21509.2,STRG.21509.3	2	STRG.21509.1,blat.proc3825158.chain_2435	2
scaffold_27	starts_in_intron	2538775	2538775	+	asmbl_36090	none	Trinity_GG_33220_c0_g1_i1,blat.proc3825178.chain_1896	2	STRG.28725.1,blat.proc3825178.chain_1895	2
scaffold_15	skipped_exon	7181904	7184176	-	asmbl_14276	none	STRG.18310.3,blat.proc3825156.chain_3042	2	STRG.18310.4,blat.proc3825156.chain_3041	2
scaffold_21	spliced_intron	5138274	5138792	-	asmbl_27612	none	STRG.24059.3	1	STRG.24059.2	1
scaffold_11	starts_in_intron	13086863	13086863	+	asmbl_6031	none	Trinity_GG_25136_c0_g1_i2,blat.proc3825170.chain_2727	2	STRG.14184.1,blat.proc3825170.chain_2726	2
scaffold_24	starts_in_intron	71048	71048	-	asmbl_32691	none	Trinity_GG_14711_c0_g1_i3,blat.proc3825160.chain_3440	2	STRG.26319.1,blat.proc3825160.chain_3439,blat.proc3825160.chain_3441	3
scaffold_12	alternate_exon	14290451	14290670	-	asmbl_9006,asmbl_9008	none	STRG.15271.3,blat.proc3825156.chain_66,blat.proc3825156.chain_67	3	STRG.15271.2	1
scaffold_24	retained_intron	162380	162721	-	asmbl_32699	none	STRG.26320.2,Trinity_GG_14715_c0_g1_i3,blat.proc3825160.chain_3447	3	Trinity_GG_14715_c0_g1_i1,blat.proc3825160.chain_3448	2
scaffold_13	alt_acceptor	3913614	3913615	+	asmbl_10750	none	STRG.15718.2	1	STRG.15718.1,blat.proc3825172.chain_455	2
scaffold_21	retained_intron	2654905	2655051	-	asmbl_27484,asmbl_27487	none	STRG.23906.3,Trinity_GG_13292_c0_g1_i8,blat.proc3825160.chain_980	3	STRG.23906.1,STRG.23906.2,Trinity_GG_13292_c0_g1_i2,Trinity_GG_13292_c0_g1_i3,blat.proc3825160.chain_976,blat.proc3825160.chain_977,blat.proc3825160.chain_981,blat.proc3825160.chain_982,blat.proc3825160.chain_983	9
scaffold_1	alt_donor	17729078	17729079	+	asmbl_2532	none	STRG.1245.2,blat.proc3825164.chain_1409	2	STRG.1245.1	1
scaffold_13	alt_donor	4457825	4457826	+	asmbl_10797	none	STRG.15770.3,blat.proc3825172.chain_511	2	STRG.15770.4,Trinity_GG_25976_c0_g2_i2,blat.proc3825172.chain_507	3
scaffold_18	retained_intron	7509091	7509220	-	asmbl_19948	none	Trinity_GG_11994_c0_g1_i2,blat.proc3825158.chain_2344	2	STRG.21447.1,Trinity_GG_11994_c0_g1_i1,Trinity_GG_11994_c0_g1_i3,blat.proc3825158.chain_2345,blat.proc3825158.chain_2346	5
scaffold_2	retained_intron	19140192	19140304	+	asmbl_25266	none	STRG.2783.1,Trinity_GG_18842_c0_g1_i2,blat.proc3825164.chain_2980	3	STRG.2783.2,blat.proc3825164.chain_2981	2
scaffold_2	retained_intron	3079174	3079230	+	asmbl_24269	none	Trinity_GG_18268_c0_g1_i1,blat.proc3825164.chain_1847	2	STRG.1752.1	1
scaffold_17	retained_exon	9570412	9570707	+	asmbl_19117	none	STRG.20579.2,blat.proc3825174.chain_1454	2	STRG.20579.1,blat.proc3825174.chain_1453	2
scaffold_1	starts_in_intron	9254732	9254732	+	asmbl_1970	none	Trinity_GG_17679_c0_g1_i1,blat.proc3825164.chain_724	2	STRG.619.1,STRG.619.2,STRG.619.3,STRG.619.4,Trinity_GG_17679_c0_g1_i2,Trinity_GG_17679_c0_g1_i3,Trinity_GG_17679_c0_g1_i4,blat.proc3825164.chain_721,blat.proc3825164.chain_722,blat.proc3825164.chain_723	10
scaffold_8	spliced_intron	18249988	18250262	-	asmbl_52527,asmbl_52529	none	STRG.10728.3,blat.proc3825152.chain_3015,blat.proc3825152.chain_3016	3	STRG.10728.1,STRG.10728.2,blat.proc3825152.chain_3017,blat.proc3825152.chain_3019	4
scaffold_5	alternate_exon	8134726	8134923	+	asmbl_45534	none	STRG.6190.2,blat.proc3825166.chain_2398	2	STRG.6190.3,blat.proc3825166.chain_2397	2
scaffold_7	spliced_intron	7927994	7928676	-	asmbl_50978,asmbl_50980	none	STRG.9043.1,blat.proc3825152.chain_1442,blat.proc3825152.chain_1443	3	blat.proc3825152.chain_1441	1
scaffold_26	alternate_exon	423394	423751	+	asmbl_34684,asmbl_34685	none	STRG.27868.2,blat.proc3825178.chain_941	2	STRG.27868.1,blat.proc3825178.chain_942,blat.proc3825178.chain_943	3
scaffold_9	alt_donor	9853052	9853053	+	asmbl_54265	none	STRG.11357.2	1	STRG.11357.1,blat.proc3825170.chain_207	2
scaffold_7	ends_in_intron	12453642	12453642	-	asmbl_51235	none	STRG.9354.4	1	STRG.9354.1,STRG.9354.2,STRG.9354.3,Trinity_GG_5252_c0_g1_i20	4
scaffold_20	retained_exon	1616257	1616378	-	asmbl_25589,asmbl_25592	none	STRG.22893.2,STRG.22893.4	2	STRG.22893.1	1
scaffold_5	alt_donor	7408024	7408025	-	asmbl_44174	none	STRG.6142.3	1	STRG.6142.1,STRG.6142.2	2
scaffold_20	ends_in_intron	10444870	10444870	+	asmbl_26969	none	blat.proc3825176.chain_675	1	STRG.23582.1,blat.proc3825176.chain_674	2
scaffold_21	spliced_intron	5770329	5771473	-	asmbl_27691,asmbl_27692,asmbl_27695,asmbl_27696,asmbl_27697	none	STRG.24114.1,STRG.24114.2,STRG.24114.3,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200,blat.proc3825160.chain_1201,blat.proc3825160.chain_1203	7	blat.proc3825160.chain_1198	1
scaffold_2	alt_acceptor	19774094	19774095	+	asmbl_25287	none	blat.proc3825164.chain_3073	1	STRG.2827.1,STRG.2827.2,blat.proc3825164.chain_3071,blat.proc3825164.chain_3072,blat.proc3825164.chain_3074	5
scaffold_25	alt_acceptor	6073591	6073592	-	asmbl_34316,asmbl_34319,asmbl_34320,asmbl_34321	none	STRG.27490.4,blat.proc3825162.chain_851	2	STRG.27490.1,STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_852	4
scaffold_21	spliced_intron	6818461	6818654	+	asmbl_28702,asmbl_28704,asmbl_28705	none	STRG.24217.2,blat.proc3825176.chain_1368,blat.proc3825176.chain_1369,blat.proc3825176.chain_1371	4	STRG.24217.1,Trinity_GG_30700_c0_g1_i3,blat.proc3825176.chain_1370,blat.proc3825176.chain_1372	4
scaffold_3	alt_donor	17834057	17834058	+	asmbl_40700	none	STRG.3996.2	1	STRG.3996.1,blat.proc3825166.chain_502,blat.proc3825166.chain_503,blat.proc3825166.chain_505	4
scaffold_2	spliced_intron	7895023	7895182	+	asmbl_24589,asmbl_24590,asmbl_24591,asmbl_24592,asmbl_24596,asmbl_24597	none	STRG.2085.1,STRG.2085.2,STRG.2085.3,blat.proc3825164.chain_2201,blat.proc3825164.chain_2202,blat.proc3825164.chain_2203,blat.proc3825164.chain_2205,blat.proc3825164.chain_2206,blat.proc3825164.chain_2208,blat.proc3825164.chain_2210,blat.proc3825164.chain_2211	11	Trinity_GG_18472_c0_g1_i8,blat.proc3825164.chain_2207	2
scaffold_15	spliced_intron	15501981	15502092	+	asmbl_15799,asmbl_15800,asmbl_15801,asmbl_15803	none	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602,blat.proc3825172.chain_3603	8	STRG.18943.2	1
scaffold_5	starts_in_intron	10884885	10884885	+	asmbl_45708	none	Trinity_GG_20783_c0_g1_i1,blat.proc3825166.chain_2582	2	STRG.6360.1,blat.proc3825166.chain_2580	2
scaffold_23	skipped_exon	10701051	10702423	+	asmbl_31868	none	STRG.26258.2	1	STRG.26258.1	1
scaffold_19	retained_intron	12822377	12822631	-	asmbl_22553	none	blat.proc3825158.chain_3409	1	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3412,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	7
scaffold_16	alt_donor	15174488	15174489	+	asmbl_16717	none	STRG.19880.2,Trinity_GG_28160_c0_g1_i1,blat.proc3825174.chain_700	3	STRG.19880.1,Trinity_GG_28160_c0_g1_i2,blat.proc3825174.chain_701	3
scaffold_2	alternate_exon	15296160	15296192	+	asmbl_25028	none	STRG.2479.2	1	STRG.2479.1,blat.proc3825164.chain_2747	2
scaffold_13	spliced_intron	13868019	13868068	+	asmbl_11412	none	STRG.16439.2	1	STRG.16439.1,blat.proc3825156.chain_1285	2
scaffold_10	alt_donor	8917894	8917895	+	asmbl_3343	none	blat.proc3825170.chain_1196	1	STRG.12642.2,blat.proc3825170.chain_1194	2
scaffold_3	ends_in_intron	16001243	16001243	-	asmbl_39466	none	Trinity_GG_2132_c1_g1_i1,blat.proc3825150.chain_53	2	STRG.3876.1,blat.proc3825150.chain_52	2
scaffold_11	alternate_exon	11045514	11045592	-	asmbl_7012	none	STRG.14068.1	1	STRG.14068.2,STRG.14068.3	2
scaffold_14	retained_intron	2373729	2374187	-	asmbl_12934,asmbl_12935,asmbl_12936,asmbl_12938	none	STRG.16854.5,STRG.16854.6,STRG.16854.7,Trinity_GG_9462_c0_g1_i7,Trinity_GG_9462_c0_g1_i8	5	STRG.16854.1,STRG.16854.2,STRG.16854.3,STRG.16854.4	4
scaffold_9	alt_acceptor	2801830	2801831	+	asmbl_53866	none	blat.proc3825168.chain_3428	1	STRG.10918.1,STRG.10918.2,STRG.10918.4,STRG.10918.5,STRG.10918.6,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3430,blat.proc3825168.chain_3431	8
scaffold_17	spliced_intron	1128141	1128599	+	asmbl_18594	none	STRG.19963.4,blat.proc3825174.chain_838	2	STRG.19963.2,STRG.19963.3,Trinity_GG_28239_c0_g1_i7,blat.proc3825174.chain_837	4
scaffold_13	retained_intron	3811189	3811295	-	asmbl_9586	none	blat.proc3825156.chain_546	1	STRG.15712.1,blat.proc3825156.chain_543,blat.proc3825156.chain_545	3
scaffold_8	alt_donor	8172684	8172685	+	asmbl_53005	none	STRG.10103.1	1	STRG.10103.2	1
scaffold_2	retained_intron	7936735	7936885	+	asmbl_24604	none	Trinity_GG_18487_c0_g1_i2,blat.proc3825164.chain_2245	2	STRG.2090.1,Trinity_GG_18487_c0_g1_i6,Trinity_GG_18487_c0_g1_i7,Trinity_GG_18487_c0_g1_i9,Trinity_GG_18487_c0_g2_i1,blat.proc3825164.chain_2246,blat.proc3825164.chain_2247,blat.proc3825164.chain_2250,blat.proc3825164.chain_2251	9
scaffold_13	alt_donor	4378422	4378423	+	asmbl_10786,asmbl_10788,asmbl_10790	none	STRG.15764.1,STRG.15764.3,STRG.15764.5	3	STRG.15764.2,STRG.15764.4	2
scaffold_15	starts_in_intron	4234962	4234962	+	asmbl_15137	none	blat.proc3825172.chain_2825	1	STRG.18168.1,blat.proc3825172.chain_2824	2
scaffold_14	ends_in_intron	3102656	3102656	+	asmbl_11902	none	blat.proc3825172.chain_1668	1	STRG.16901.1	1
scaffold_3	skipped_exon	14512784	14514077	-	asmbl_39385	none	STRG.3791.3,Trinity_GG_2101_c0_g1_i1,blat.proc3825148.chain_3738	3	STRG.3791.1,STRG.3791.2	2
scaffold_27	alt_acceptor	2903073	2903074	-	asmbl_36868	none	STRG.28776.1,Trinity_GG_16082_c0_g1_i2,blat.proc3825162.chain_1966	3	STRG.28776.2	1
scaffold_17	alt_acceptor	14037349	14037350	-	asmbl_18400	none	STRG.20881.1	1	STRG.20881.3	1
scaffold_1	spliced_intron	3270179	3270373	-	asmbl_144	none	STRG.204.3	1	STRG.204.2,blat.proc3825148.chain_202	2
scaffold_15	alt_acceptor	13760201	13760202	-	asmbl_14663,asmbl_14665	none	STRG.18808.3,Trinity_GG_10569_c0_g1_i3,blat.proc3825156.chain_3662,blat.proc3825156.chain_3664	4	STRG.18808.4,blat.proc3825156.chain_3663	2
scaffold_15	spliced_intron	4231185	4231387	+	asmbl_15129,asmbl_15132	none	STRG.18172.2,blat.proc3825172.chain_2838,blat.proc3825172.chain_2843	3	blat.proc3825172.chain_2836	1
scaffold_2	alt_donor	13398120	13398121	+	asmbl_24842	none	STRG.2359.3,Trinity_GG_18642_c0_g1_i5,blat.proc3825164.chain_2559	3	STRG.2359.2,blat.proc3825164.chain_2560	2
scaffold_11	starts_in_intron	8478568	8478568	+	asmbl_5788	none	blat.proc3825170.chain_2289	1	STRG.13864.1,STRG.13864.2,Trinity_GG_24888_c0_g1_i1,Trinity_GG_24888_c0_g1_i4,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2290,blat.proc3825170.chain_2291,blat.proc3825170.chain_2292	8
scaffold_19	alt_acceptor	8478076	8478077	-	asmbl_22302	none	STRG.22315.2,blat.proc3825158.chain_3032	2	STRG.22315.1,blat.proc3825158.chain_3033	2
scaffold_2	spliced_intron	8875113	8876256	+	asmbl_24656,asmbl_24657	none	STRG.2139.4,blat.proc3825164.chain_2329	2	STRG.2139.1,STRG.2139.2,STRG.2139.3,blat.proc3825164.chain_2330	4
scaffold_14	skipped_exon	3796395	3797745	+	asmbl_11964	none	STRG.16953.1,blat.proc3825172.chain_1716	2	STRG.16953.2	1
scaffold_23	alt_acceptor	10893556	10893557	-	asmbl_31168	none	STRG.26289.3	1	STRG.26289.1,STRG.26289.2,blat.proc3825160.chain_3408,blat.proc3825160.chain_3409	4
scaffold_3	ends_in_intron	18119300	18119300	+	asmbl_40725	none	Trinity_GG_19569_c1_g1_i1,blat.proc3825166.chain_519	2	STRG.4024.1,blat.proc3825166.chain_517	2
scaffold_1	ends_in_intron	11692560	11692560	-	asmbl_657	none	blat.proc3825148.chain_703	1	blat.proc3825148.chain_702	1
scaffold_10	alt_acceptor	6072208	6072209	-	asmbl_4423	none	STRG.12445.3,blat.proc3825154.chain_1028	2	STRG.12445.1,STRG.12445.2,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1032,blat.proc3825154.chain_1033,blat.proc3825154.chain_1034	8
scaffold_20	spliced_intron	11672168	11672271	-	asmbl_26176	none	blat.proc3825160.chain_749	1	STRG.23670.1,blat.proc3825160.chain_748	2
scaffold_21	retained_exon	608994	609074	+	asmbl_28280	none	STRG.23750.2,blat.proc3825176.chain_968	2	STRG.23750.1,blat.proc3825176.chain_967	2
scaffold_19	alt_donor	12108308	12108309	-	asmbl_22456,asmbl_22457,asmbl_22459	none	STRG.22539.1,STRG.22539.5,Trinity_GG_12482_c0_g1_i6,blat.proc3825158.chain_3190,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	6	STRG.22539.4	1
scaffold_26	alt_acceptor	9607191	9607192	+	asmbl_35245,asmbl_35249	none	STRG.28513.3,Trinity_GG_33085_c0_g1_i1,blat.proc3825178.chain_1632	3	STRG.28513.1,STRG.28513.2,Trinity_GG_33085_c0_g1_i3,blat.proc3825178.chain_1633	4
scaffold_24	starts_in_intron	7610103	7610103	-	asmbl_33037	none	blat.proc3825162.chain_163	1	STRG.26793.1	1
scaffold_23	starts_in_intron	7020747	7020747	+	asmbl_31666	none	blat.proc3825176.chain_2962	1	STRG.26029.1	1
scaffold_21	alt_acceptor	4593913	4593914	+	asmbl_28528	none	STRG.24013.2	1	STRG.24013.3,blat.proc3825176.chain_1210	2
scaffold_1	spliced_intron	14304985	14305075	+	asmbl_2376	none	STRG.1021.1,blat.proc3825164.chain_1213	2	blat.proc3825164.chain_1215	1
scaffold_22	alternate_exon	10320530	10320730	+	asmbl_30355	none	blat.proc3825176.chain_2362	1	STRG.25386.2,blat.proc3825176.chain_2361	2
scaffold_8	starts_in_intron	4852653	4852653	+	asmbl_52861,asmbl_52862	none	Trinity_GG_22856_c0_g1_i1,Trinity_GG_22856_c0_g1_i2,blat.proc3825168.chain_2525,blat.proc3825168.chain_2527	4	STRG.9951.1,STRG.9951.2,blat.proc3825168.chain_2523,blat.proc3825168.chain_2524,blat.proc3825168.chain_2528	5
scaffold_1	alt_acceptor	9171402	9171403	-	asmbl_520	none	STRG.613.2	1	STRG.613.1,Trinity_GG_294_c0_g1_i1,blat.proc3825148.chain_532	3
scaffold_5	alt_acceptor	13235139	13235140	+	asmbl_45863	none	STRG.6565.1,blat.proc3825166.chain_2743	2	STRG.6565.2,STRG.6565.3,blat.proc3825166.chain_2741	3
scaffold_5	spliced_intron	17226444	17226936	+	asmbl_46153	none	STRG.6896.2	1	Trinity_GG_21086_c0_g1_i8,blat.proc3825166.chain_3073,blat.proc3825166.chain_3074	3
scaffold_19	ends_in_intron	13264002	13264002	-	asmbl_22632	none	Trinity_GG_12616_c0_g1_i4,blat.proc3825158.chain_3492	2	STRG.22647.1,STRG.22647.2,blat.proc3825158.chain_3491	3
scaffold_6	ends_in_intron	883139	883139	-	asmbl_48089	none	STRG.7159.3	1	STRG.7159.1,STRG.7159.2	2
scaffold_6	spliced_intron	8172324	8172399	-	asmbl_48538,asmbl_48541,asmbl_48542,asmbl_48543,asmbl_48544,asmbl_48545	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_87,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93	7	Trinity_GG_4351_c0_g1_i4,blat.proc3825152.chain_88,blat.proc3825152.chain_90	3
scaffold_1	alt_acceptor	10415040	10415041	-	asmbl_584	none	STRG.678.3,blat.proc3825148.chain_717	2	STRG.678.2,blat.proc3825148.chain_718	2
scaffold_11	alt_donor	8790357	8790358	-	asmbl_6877,asmbl_6878	none	STRG.13904.1,blat.proc3825170.chain_2484	2	STRG.13904.2,STRG.13904.3,blat.proc3825170.chain_2482,blat.proc3825170.chain_2483	4
scaffold_4	alt_donor	6701492	6701493	+	asmbl_41422	none	STRG.4531.1,blat.proc3825166.chain_908	2	STRG.4531.2,STRG.4531.3	2
scaffold_3	starts_in_intron	9844650	9844650	-	asmbl_39072	none	blat.proc3825148.chain_3336	1	STRG.3462.1,blat.proc3825148.chain_3339	2
scaffold_5	skipped_exon	4683554	4684210	-	asmbl_43983,asmbl_43995	none	STRG.5929.1,blat.proc3825150.chain_2083,blat.proc3825150.chain_2085	3	blat.proc3825150.chain_2075,blat.proc3825150.chain_2078,blat.proc3825150.chain_2081	3
scaffold_2	starts_in_intron	6084270	6084270	-	asmbl_23178	none	Trinity_GG_1051_c0_g1_i9,blat.proc3825148.chain_1869	2	STRG.1980.1,Trinity_GG_1051_c0_g1_i2,blat.proc3825148.chain_1868	3
scaffold_12	alt_donor	14041156	14041157	+	asmbl_8043,asmbl_8045	none	STRG.15233.1,STRG.15233.2,Trinity_GG_25691_c0_g1_i2,blat.proc3825170.chain_3714	4	Trinity_GG_25691_c0_g1_i1,blat.proc3825170.chain_3715	2
scaffold_6	alternate_exon	3321067	3321119	+	asmbl_46830	none	STRG.7339.1	1	STRG.7339.2,Trinity_GG_21297_c0_g1_i1,blat.proc3825166.chain_3444	3
scaffold_16	alternate_exon	14551488	14551570	+	asmbl_16685	none	STRG.19851.2,Trinity_GG_28180_c0_g1_i3,blat.proc3825174.chain_730	3	STRG.19851.1	1
scaffold_20	ends_in_intron	10911985	10911985	-	asmbl_26126	none	Trinity_GG_13159_c0_g1_i3,blat.proc3825160.chain_677	2	STRG.23619.1,blat.proc3825160.chain_678	2
scaffold_4	starts_in_intron	6604085	6604085	+	asmbl_41415	none	Trinity_GG_19814_c0_g1_i2,blat.proc3825166.chain_970	2	STRG.4521.1,STRG.4521.2,blat.proc3825166.chain_971,blat.proc3825166.chain_972,blat.proc3825166.chain_973	5
scaffold_2	starts_in_intron	6467086	6467086	+	asmbl_24471	none	Trinity_GG_18413_c0_g1_i2,blat.proc3825164.chain_2092	2	STRG.2011.1,STRG.2011.2,blat.proc3825164.chain_2091,blat.proc3825164.chain_2093	4
scaffold_15	alternate_exon	11495532	11496454	-	asmbl_14516,asmbl_14517	none	STRG.18613.1,blat.proc3825156.chain_3487,blat.proc3825156.chain_3489,blat.proc3825156.chain_3490	4	STRG.18613.2	1
scaffold_23	ends_in_intron	4700961	4700961	+	asmbl_31529	none	Trinity_GG_31542_c0_g1_i1,blat.proc3825176.chain_2737	2	STRG.25878.1,Trinity_GG_31542_c0_g1_i2,blat.proc3825176.chain_2736	3
scaffold_22	alt_donor	4288161	4288162	-	asmbl_29241	none	STRG.24854.3	1	blat.proc3825160.chain_2087	1
scaffold_3	spliced_intron	4953609	4954271	+	asmbl_40047	none	STRG.3193.1,blat.proc3825164.chain_3467	2	Trinity_GG_19123_c0_g1_i2,blat.proc3825164.chain_3468	2
scaffold_22	alternate_exon	10681482	10681709	-	asmbl_29618	none	STRG.25415.3	1	STRG.25415.1,STRG.25415.2,Trinity_GG_14238_c0_g1_i1,blat.proc3825160.chain_2608	4
scaffold_11	retained_intron	9281871	9282068	+	asmbl_5884	none	STRG.13971.2,Trinity_GG_25028_c0_g1_i1,blat.proc3825170.chain_2543	3	STRG.13971.1,Trinity_GG_25028_c0_g1_i2,blat.proc3825170.chain_2544	3
scaffold_12	alternate_exon	2920428	2926205	-	asmbl_8333	none	STRG.14526.3	1	STRG.14526.5	1
scaffold_1	alt_acceptor	3270179	3270180	-	asmbl_140,asmbl_142	none	STRG.204.1,blat.proc3825148.chain_203,blat.proc3825148.chain_204	3	STRG.204.2	1
scaffold_2	alt_acceptor	3899360	3899361	+	asmbl_24316,asmbl_24317,asmbl_24319,asmbl_24320,asmbl_24322	none	STRG.1826.1,STRG.1826.2,STRG.1826.3,blat.proc3825164.chain_1999,blat.proc3825164.chain_2000,blat.proc3825164.chain_2002,blat.proc3825164.chain_2003,blat.proc3825164.chain_2004	8	blat.proc3825164.chain_2001	1
scaffold_6	starts_in_intron	9580409	9580409	-	asmbl_48627	none	blat.proc3825152.chain_171	1	STRG.7809.1,blat.proc3825152.chain_172,blat.proc3825152.chain_173	3
scaffold_10	spliced_intron	16531561	16531803	+	asmbl_3718,asmbl_3720	none	STRG.13128.1,blat.proc3825170.chain_1652,blat.proc3825170.chain_1653	3	STRG.13128.3,blat.proc3825170.chain_1651	2
scaffold_1	retained_intron	12410452	12410983	+	asmbl_2212	none	Trinity_GG_17839_c0_g1_i1,blat.proc3825164.chain_1024	2	STRG.855.2	1
scaffold_21	ends_in_intron	707889	707889	-	asmbl_27351,asmbl_27356	none	Trinity_GG_13202_c0_g1_i2,Trinity_GG_13202_c0_g1_i5,blat.proc3825160.chain_795,blat.proc3825160.chain_798	4	STRG.23759.1,STRG.23759.2,Trinity_GG_13202_c0_g1_i4,Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793,blat.proc3825160.chain_794,blat.proc3825160.chain_796,blat.proc3825160.chain_797	8
scaffold_3	retained_exon	17695731	17695801	+	asmbl_40689	none	STRG.3991.2,blat.proc3825166.chain_441	2	STRG.3991.1	1
scaffold_10	alt_acceptor	3421265	3421266	-	asmbl_4206	none	STRG.12173.2,blat.proc3825154.chain_733	2	STRG.12173.1,blat.proc3825154.chain_732	2
scaffold_17	retained_intron	9006765	9006969	+	asmbl_19057	none	blat.proc3825174.chain_1323	1	STRG.20525.1,blat.proc3825174.chain_1320,blat.proc3825174.chain_1322	3
scaffold_26	alt_acceptor	133288	133289	-	asmbl_35372	none	blat.proc3825162.chain_1182	1	STRG.27835.1,blat.proc3825162.chain_1181	2
scaffold_27	starts_in_intron	1097119	1097119	+	asmbl_35991	none	Trinity_GG_33149_c0_g1_i1,blat.proc3825178.chain_1750	2	STRG.28608.1,blat.proc3825178.chain_1751,blat.proc3825178.chain_1752	3
scaffold_6	retained_intron	13574733	13575353	-	asmbl_48913,asmbl_48917	none	STRG.8098.1,Trinity_GG_4614_c2_g1_i4,Trinity_GG_4614_c2_g1_i5,blat.proc3825152.chain_539,blat.proc3825152.chain_540	5	STRG.8098.2,STRG.8098.3,STRG.8098.4,Trinity_GG_4614_c2_g1_i3,blat.proc3825152.chain_538	5
scaffold_2	alternate_exon	14342901	14343078	-	asmbl_23596	none	blat.proc3825148.chain_2417	1	blat.proc3825148.chain_2418	1
scaffold_1	alternate_exon	12109034	12109217	+	asmbl_2176	none	STRG.826.2,blat.proc3825164.chain_954	2	STRG.826.1,blat.proc3825164.chain_952	2
scaffold_14	skipped_exon	8307389	8308665	+	asmbl_12221	none	STRG.17257.2	1	STRG.17257.1,blat.proc3825172.chain_2012	2
scaffold_5	alt_donor	10163602	10163603	+	asmbl_45661	none	STRG.6319.1,blat.proc3825166.chain_2508	2	STRG.6319.2	1
scaffold_7	alternate_exon	12543462	12543529	-	asmbl_51237,asmbl_51241,asmbl_51243	none	STRG.9363.1,STRG.9363.4,blat.proc3825152.chain_1713,blat.proc3825152.chain_1717	4	STRG.9363.5	1
scaffold_7	spliced_intron	4931699	4933374	+	asmbl_49773	none	STRG.8852.2,blat.proc3825168.chain_1347	2	STRG.8852.4,blat.proc3825168.chain_1349,blat.proc3825168.chain_1350	3
scaffold_1	alt_acceptor	10857895	10857896	+	asmbl_2033	none	STRG.711.3	1	STRG.711.1,blat.proc3825164.chain_850	2
scaffold_4	retained_intron	17115130	17115304	+	asmbl_42038	none	Trinity_GG_20255_c0_g1_i5	1	STRG.5308.4	1
scaffold_22	alternate_exon	685499	685673	+	asmbl_29877	none	STRG.24720.2,Trinity_GG_30975_c0_g1_i2,blat.proc3825176.chain_1839	3	Trinity_GG_30975_c0_g1_i1,blat.proc3825176.chain_1840	2
scaffold_15	starts_in_intron	14592641	14592641	-	asmbl_14731	none	blat.proc3825156.chain_3744	1	STRG.18874.1,blat.proc3825156.chain_3743	2
scaffold_8	spliced_intron	4865417	4865526	+	asmbl_52865	none	STRG.9949.1,blat.proc3825168.chain_2508	2	blat.proc3825168.chain_2507	1
scaffold_10	alternate_exon	4543801	4544090	-	asmbl_4299,asmbl_4300	none	STRG.12283.1,blat.proc3825154.chain_834	2	STRG.12283.2,blat.proc3825154.chain_833	2
scaffold_7	spliced_intron	4933150	4933374	+	asmbl_49779	none	blat.proc3825168.chain_1351	1	STRG.8852.4,blat.proc3825168.chain_1349,blat.proc3825168.chain_1350	3
scaffold_4	retained_exon	19587419	19587577	-	asmbl_43454	none	STRG.5543.1,blat.proc3825150.chain_1743	2	STRG.5543.3,STRG.5543.4,blat.proc3825150.chain_1742	3
scaffold_25	starts_in_intron	290849	290849	+	asmbl_33323	none	STRG.27068.3	1	STRG.27068.1,STRG.27068.2	2
scaffold_4	ends_in_intron	307114	307114	-	asmbl_42328	none	Trinity_GG_2302_c0_g1_i3,blat.proc3825150.chain_363	2	STRG.4129.1,STRG.4129.3,Trinity_GG_2302_c0_g1_i1,Trinity_GG_2302_c0_g1_i2,blat.proc3825150.chain_361,blat.proc3825150.chain_362	6
scaffold_13	spliced_intron	6396468	6396589	+	asmbl_10923,asmbl_10925,asmbl_10927,asmbl_10929	none	STRG.15929.2,STRG.15929.4,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i2,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_653,blat.proc3825172.chain_655	8	STRG.15929.1,Trinity_GG_26055_c0_g1_i4,blat.proc3825172.chain_654	3
scaffold_14	retained_intron	3364505	3364903	-	asmbl_13003	none	STRG.16915.1,Trinity_GG_9489_c0_g1_i2,blat.proc3825156.chain_1756	3	STRG.16915.2,blat.proc3825156.chain_1757	2
scaffold_2	spliced_intron	15271311	15271411	+	asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	8	blat.proc3825164.chain_2622	1
scaffold_1	spliced_intron	12953093	12953198	-	asmbl_784	none	STRG.923.2,blat.proc3825148.chain_897	2	STRG.923.1,STRG.923.3,blat.proc3825148.chain_898,blat.proc3825148.chain_899	4
scaffold_18	spliced_intron	8726889	8727002	+	asmbl_20857,asmbl_20858,asmbl_20859,asmbl_20861	none	STRG.21537.1,STRG.21537.2,STRG.21537.3,blat.proc3825174.chain_2615,blat.proc3825174.chain_2616,blat.proc3825174.chain_2617,blat.proc3825174.chain_2620	7	blat.proc3825174.chain_2618	1
scaffold_12	skipped_exon	9668105	9669325	+	asmbl_7867	none	STRG.14944.2,Trinity_GG_25536_c0_g1_i3,blat.proc3825170.chain_3434	3	STRG.14944.1	1
scaffold_2	alt_donor	10586583	10586584	+	asmbl_24705	none	blat.proc3825164.chain_2396	1	STRG.2219.1,blat.proc3825164.chain_2397	2
scaffold_9	skipped_exon	3663798	3666612	+	asmbl_53907	none	STRG.10971.1,Trinity_GG_23413_c0_g1_i4,blat.proc3825168.chain_3495	3	blat.proc3825168.chain_3493	1
scaffold_2	spliced_intron	7241982	7242169	+	asmbl_24552,asmbl_24554,asmbl_24557	none	STRG.2055.1,blat.proc3825164.chain_2169,blat.proc3825164.chain_2172,blat.proc3825164.chain_2173	4	blat.proc3825164.chain_2170,blat.proc3825164.chain_2171	2
scaffold_10	retained_exon	7797564	7797608	-	asmbl_4555,asmbl_4556	none	STRG.12566.1,STRG.12566.2,blat.proc3825154.chain_1154,blat.proc3825154.chain_1155	4	STRG.12566.3	1
scaffold_1	retained_intron	20498696	20498844	-	asmbl_1183	none	Trinity_GG_731_c1_g1_i1,blat.proc3825148.chain_1351	2	blat.proc3825148.chain_1350	1
scaffold_10	ends_in_intron	341697	341697	-	asmbl_3938	none	STRG.11919.2,Trinity_GG_6630_c1_g1_i1,blat.proc3825154.chain_454	3	STRG.11919.1,blat.proc3825154.chain_451,blat.proc3825154.chain_452	3
scaffold_14	starts_in_intron	8404155	8404155	-	asmbl_13311	none	blat.proc3825156.chain_2030	1	STRG.17278.1,STRG.17278.2,STRG.17278.3,STRG.17278.4,blat.proc3825156.chain_2031	5
scaffold_3	spliced_intron	9515750	9516729	+	asmbl_40225,asmbl_40226,asmbl_40227,asmbl_40229	none	STRG.3436.1,Trinity_GG_19245_c0_g1_i2,Trinity_GG_19245_c0_g1_i3,Trinity_GG_19245_c0_g1_i4,blat.proc3825164.chain_3674,blat.proc3825164.chain_3676,blat.proc3825164.chain_3677,blat.proc3825164.chain_3678	8	STRG.3436.2,Trinity_GG_19245_c1_g1_i1,blat.proc3825164.chain_3679	3
scaffold_15	spliced_intron	1797670	1797717	-	asmbl_13974	none	STRG.17982.1	1	blat.proc3825156.chain_2748	1
scaffold_28	alternate_exon	2342938	2343000	-	asmbl_38045,asmbl_38048	none	Trinity_GG_16495_c0_g1_i3,blat.proc3825162.chain_2607,blat.proc3825162.chain_2608	3	blat.proc3825162.chain_2609	1
scaffold_13	ends_in_intron	7369752	7369752	+	asmbl_11042	none	Trinity_GG_26104_c0_g1_i5,blat.proc3825172.chain_756	2	STRG.16037.1,Trinity_GG_26104_c0_g1_i3,blat.proc3825172.chain_758	3
scaffold_6	alternate_exon	14178030	14180729	-	asmbl_48990	none	STRG.8181.1,blat.proc3825152.chain_562	2	STRG.8181.2,blat.proc3825152.chain_565	2
scaffold_4	skipped_exon	4922110	4923378	+	asmbl_41320	none	STRG.4388.2	1	STRG.4388.1,blat.proc3825166.chain_869,blat.proc3825166.chain_870	3
scaffold_5	spliced_intron	5063957	5064081	-	asmbl_44026	none	STRG.5964.1,Trinity_GG_3315_c0_g1_i4,blat.proc3825150.chain_2090	3	Trinity_GG_3315_c0_g1_i2,blat.proc3825150.chain_2091	2
scaffold_24	alt_acceptor	8118542	8118543	+	asmbl_32412	none	STRG.26862.1	1	STRG.26862.2,blat.proc3825178.chain_51	2
scaffold_27	retained_intron	294852	294971	+	asmbl_35942	none	STRG.28556.1,Trinity_GG_33120_c0_g1_i1,blat.proc3825178.chain_1694	3	STRG.28556.2,Trinity_GG_33120_c0_g1_i2,blat.proc3825178.chain_1695	3
scaffold_6	alt_donor	7285978	7285979	-	asmbl_48491	none	STRG.7634.2	1	STRG.7634.1,blat.proc3825152.chain_36	2
scaffold_11	spliced_intron	3358702	3358797	+	asmbl_5422,asmbl_5424	none	STRG.13469.1,blat.proc3825170.chain_2004	2	blat.proc3825170.chain_2003	1
scaffold_6	alternate_exon	12115545	12116670	+	asmbl_47375	none	STRG.7985.2,blat.proc3825168.chain_430	2	STRG.7985.3,Trinity_GG_21681_c0_g1_i2,blat.proc3825168.chain_429	3
scaffold_12	skipped_exon	13030042	13031510	-	asmbl_8902	none	blat.proc3825154.chain_3690	1	STRG.15189.1,STRG.15189.2	2
scaffold_22	spliced_intron	31144	31291	+	asmbl_29801	none	STRG.24664.2,blat.proc3825176.chain_1761	2	STRG.24664.1,blat.proc3825176.chain_1762	2
scaffold_6	retained_intron	3218305	3218462	-	asmbl_48230,asmbl_48231	none	STRG.7327.2,STRG.7327.3,blat.proc3825150.chain_3411,blat.proc3825150.chain_3412	4	STRG.7327.1,blat.proc3825150.chain_3410	2
scaffold_23	alt_acceptor	10897582	10897583	+	asmbl_31890	none	STRG.26291.2,blat.proc3825176.chain_3256	2	STRG.26291.1,blat.proc3825176.chain_3258	2
scaffold_25	alt_donor	4117386	4117387	+	asmbl_33476	none	STRG.27345.2	1	STRG.27345.1,blat.proc3825178.chain_441,blat.proc3825178.chain_442	3
scaffold_20	alt_acceptor	4478057	4478058	-	asmbl_25737,asmbl_25742	none	STRG.23127.1,blat.proc3825160.chain_167,blat.proc3825160.chain_168	3	STRG.23127.2,STRG.23127.4,blat.proc3825160.chain_170	3
scaffold_3	ends_in_intron	1525755	1525755	+	asmbl_39860	none	blat.proc3825164.chain_3205	1	STRG.2978.1	1
scaffold_8	retained_intron	17454124	17454424	+	asmbl_53480	none	blat.proc3825168.chain_3161	1	STRG.10670.2,Trinity_GG_23215_c0_g1_i1,blat.proc3825168.chain_3162	3
scaffold_14	starts_in_intron	582839	582839	+	asmbl_11769	none	Trinity_GG_26527_c0_g1_i1,blat.proc3825172.chain_1519	2	STRG.16740.1,STRG.16740.2,STRG.16740.3,STRG.16740.4,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	6
scaffold_19	alt_donor	11475479	11475480	-	asmbl_22398	none	STRG.22483.1	1	STRG.22483.2,STRG.22483.3	2
scaffold_27	alt_acceptor	571601	571602	+	asmbl_35953	none	blat.proc3825178.chain_1669	1	STRG.28577.2,blat.proc3825178.chain_1668	2
scaffold_8	starts_in_intron	8793095	8793095	-	asmbl_51971	none	blat.proc3825152.chain_2400	1	STRG.10137.1,blat.proc3825152.chain_2401,blat.proc3825152.chain_2402	3
scaffold_5	skipped_exon	6064631	6065158	+	asmbl_45401	none	STRG.6029.3	1	STRG.6029.1,STRG.6029.2,blat.proc3825166.chain_2269,blat.proc3825166.chain_2270	4
scaffold_3	starts_in_intron	5528058	5528058	-	asmbl_38850	none	blat.proc3825148.chain_3082	1	STRG.3225.1,blat.proc3825148.chain_3081	2
scaffold_3	skipped_exon	6041928	6044119	-	asmbl_38880	none	STRG.3259.3	1	STRG.3259.1,STRG.3259.4,STRG.3259.6,STRG.3259.7	4
scaffold_2	retained_intron	7469630	7469727	-	asmbl_23264	none	blat.proc3825148.chain_2058	1	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063,blat.proc3825148.chain_2064	6
scaffold_17	skipped_exon	5323173	5324241	+	asmbl_18816	none	STRG.20256.1,blat.proc3825174.chain_1016	2	STRG.20256.2,blat.proc3825174.chain_1017	2
scaffold_4	retained_intron	15907621	15907662	-	asmbl_43126	none	STRG.5167.1,Trinity_GG_2866_c1_g1_i1,blat.proc3825150.chain_1306	3	STRG.5167.2	1
scaffold_16	retained_exon	9032991	9033040	+	asmbl_16456	none	STRG.19515.4,blat.proc3825174.chain_443	2	STRG.19515.1,blat.proc3825174.chain_442	2
scaffold_2	retained_exon	7214806	7215153	+	asmbl_24543,asmbl_24550	none	STRG.2054.1,STRG.2054.2,Trinity_GG_18495_c0_g1_i7,blat.proc3825164.chain_2268	4	STRG.2054.4,Trinity_GG_18495_c0_g1_i3,blat.proc3825164.chain_2271	3
scaffold_9	ends_in_intron	12067400	12067400	-	asmbl_55346	none	Trinity_GG_6348_c1_g1_i1,blat.proc3825152.chain_3730	2	STRG.11529.3	1
scaffold_20	retained_exon	2765259	2765357	-	asmbl_25671,asmbl_25673	none	STRG.23018.3,STRG.23018.4	2	STRG.23018.2,STRG.23018.5	2
scaffold_25	alt_acceptor	9120030	9120031	+	asmbl_33787	none	STRG.27725.6	1	STRG.27725.3,STRG.27725.5	2
scaffold_8	alt_donor	12411198	12411199	+	asmbl_53311	none	STRG.10430.1	1	STRG.10430.2,STRG.10430.3,Trinity_GG_23094_c0_g1_i1,blat.proc3825168.chain_2954	4
scaffold_13	starts_in_intron	6433378	6433378	-	asmbl_9787	none	Trinity_GG_8977_c0_g2_i1,blat.proc3825156.chain_851	2	STRG.15943.2	1
scaffold_6	alternate_exon	13960260	13960306	+	asmbl_47555	none	STRG.8150.1	1	STRG.8150.2,blat.proc3825168.chain_625,blat.proc3825168.chain_626	3
scaffold_2	retained_intron	15273247	15273404	+	asmbl_25018	none	blat.proc3825164.chain_2619	1	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2621	5
scaffold_12	spliced_intron	10186262	10186424	-	asmbl_8731,asmbl_8732,asmbl_8733,asmbl_8734,asmbl_8736,asmbl_8737	none	STRG.14994.1,STRG.14994.2,STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3515,blat.proc3825154.chain_3517,blat.proc3825154.chain_3518,blat.proc3825154.chain_3519,blat.proc3825154.chain_3520	9	blat.proc3825154.chain_3516	1
scaffold_10	spliced_intron	716590	716682	-	asmbl_3989	none	STRG.11957.4	1	STRG.11957.2,STRG.11957.3,STRG.11957.5,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541	5
scaffold_11	spliced_intron	1305168	1305286	-	asmbl_6427	none	STRG.13321.1,blat.proc3825154.chain_1906	2	Trinity_GG_7464_c1_g1_i1,blat.proc3825154.chain_1905	2
scaffold_6	alt_donor	8172827	8172828	-	asmbl_48538,asmbl_48543,asmbl_48544,asmbl_48545	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_91,blat.proc3825152.chain_92	5	blat.proc3825152.chain_87	1
scaffold_14	starts_in_intron	5958562	5958562	-	asmbl_13105	none	Trinity_GG_9565_c0_g1_i2,blat.proc3825156.chain_1864	2	STRG.17069.1,STRG.17069.2,blat.proc3825156.chain_1863	3
scaffold_28	retained_intron	2811349	2811511	-	asmbl_38089,asmbl_38090,asmbl_38091	none	STRG.29471.4,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	3	STRG.29471.2,STRG.29471.3,blat.proc3825162.chain_2598	3
scaffold_4	retained_exon	14318666	14318790	-	asmbl_43043	none	STRG.5048.1,blat.proc3825150.chain_1206	2	STRG.5048.3,blat.proc3825150.chain_1203	2
scaffold_22	alternate_exon	6128255	6128540	+	asmbl_30100	none	STRG.24968.7	1	STRG.24968.1,STRG.24968.4,Trinity_GG_31147_c1_g1_i7,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2125,blat.proc3825176.chain_2128,blat.proc3825176.chain_2129,blat.proc3825176.chain_2132	8
scaffold_1	alt_acceptor	11572744	11572745	-	asmbl_632,asmbl_635	none	STRG.767.1,blat.proc3825148.chain_743,blat.proc3825148.chain_747	3	STRG.767.2	1
scaffold_26	retained_intron	5746449	5746583	+	asmbl_35033	none	Trinity_GG_32933_c0_g1_i2,blat.proc3825178.chain_1358	2	STRG.28271.1,STRG.28271.2,blat.proc3825178.chain_1356,blat.proc3825178.chain_1357	4
scaffold_12	alt_donor	14041166	14041167	+	asmbl_8044	none	Trinity_GG_25691_c0_g1_i1,blat.proc3825170.chain_3715	2	STRG.15233.1,STRG.15233.2,Trinity_GG_25691_c0_g1_i2,blat.proc3825170.chain_3714	4
scaffold_14	alternate_exon	11246423	11246477	-	asmbl_13464	none	STRG.17460.2	1	STRG.17460.1,STRG.17460.3,STRG.17460.4,blat.proc3825156.chain_2266,blat.proc3825156.chain_2267	5
scaffold_15	alt_acceptor	12304512	12304513	+	asmbl_15550	none	STRG.18679.2,Trinity_GG_27555_c0_g1_i1,blat.proc3825172.chain_3303	3	STRG.18679.1,Trinity_GG_27555_c0_g1_i2,blat.proc3825172.chain_3304	3
scaffold_5	skipped_exon	992426	993796	+	asmbl_45107,asmbl_45108	none	STRG.5651.2,blat.proc3825166.chain_1830,blat.proc3825166.chain_1831	3	STRG.5651.1	1
scaffold_8	ends_in_intron	3436342	3436342	+	asmbl_52764	none	Trinity_GG_22782_c0_g1_i1,blat.proc3825168.chain_2370	2	STRG.9840.1,Trinity_GG_22782_c0_g1_i2,blat.proc3825168.chain_2369	3
scaffold_4	starts_in_intron	13820558	13820558	+	asmbl_41827	none	Trinity_GG_20113_c0_g1_i1,blat.proc3825166.chain_1445	2	STRG.5008.1,blat.proc3825166.chain_1447	2
scaffold_4	alt_donor	4433640	4433641	+	asmbl_41268,asmbl_41269	none	STRG.4342.2,STRG.4342.3,blat.proc3825166.chain_792	3	STRG.4342.4	1
scaffold_23	alt_acceptor	7702665	7702666	+	asmbl_31723,asmbl_31724	none	STRG.26086.1,STRG.26086.2	2	STRG.26086.3	1
scaffold_2	alt_donor	5183931	5183932	-	asmbl_23134	none	blat.proc3825148.chain_1970	1	blat.proc3825148.chain_1967	1
scaffold_9	starts_in_intron	16657453	16657453	-	asmbl_55606	none	blat.proc3825154.chain_282	1	STRG.11813.1,blat.proc3825154.chain_279	2
scaffold_3	starts_in_intron	15785345	15785345	-	asmbl_39452	none	blat.proc3825148.chain_3732	1	STRG.3859.2	1
scaffold_6	alternate_exon	12493114	12493763	+	asmbl_47413	none	STRG.8009.4,blat.proc3825168.chain_496	2	STRG.8009.1,STRG.8009.2,blat.proc3825168.chain_493,blat.proc3825168.chain_494,blat.proc3825168.chain_495	5
scaffold_4	retained_intron	5651747	5651850	-	asmbl_42623	none	blat.proc3825150.chain_658	1	STRG.4472.1,STRG.4472.2,STRG.4472.3,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_663,blat.proc3825150.chain_664,blat.proc3825150.chain_665,blat.proc3825150.chain_666,blat.proc3825150.chain_667,blat.proc3825150.chain_668	12
scaffold_114	skipped_exon	12177	13245	+	asmbl_7408	none	STRG.30151.1	1	STRG.30151.2	1
scaffold_2	alternate_exon	9870088	9870118	-	asmbl_23399	none	STRG.2191.2	1	STRG.2191.1	1
scaffold_19	spliced_intron	12491455	12492160	+	asmbl_21809,asmbl_21811	none	STRG.22590.3,blat.proc3825174.chain_3624	2	STRG.22590.2	1
scaffold_15	spliced_intron	15413602	15413826	+	asmbl_15780,asmbl_15784,asmbl_15785	none	STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3609	3	STRG.18953.1,STRG.18953.2,STRG.18953.5,blat.proc3825172.chain_3607,blat.proc3825172.chain_3608,blat.proc3825172.chain_3611,blat.proc3825172.chain_3612	7
scaffold_5	alt_acceptor	18221516	18221517	+	asmbl_46220	none	STRG.6959.3	1	STRG.6959.1,STRG.6959.2,STRG.6959.4,STRG.6959.5,blat.proc3825166.chain_3166,blat.proc3825166.chain_3167	6
scaffold_10	spliced_intron	1794196	1794683	+	asmbl_2960	none	blat.proc3825170.chain_790	1	Trinity_GG_24010_c0_g1_i3,blat.proc3825170.chain_789	2
scaffold_14	retained_exon	7495626	7496652	+	asmbl_12167	none	STRG.17193.4,blat.proc3825172.chain_1878	2	STRG.17193.3	1
scaffold_27	alternate_exon	2820671	2820856	+	asmbl_36117	none	STRG.28763.2	1	STRG.28763.1,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1924	5
scaffold_23	skipped_exon	5617751	5620236	-	asmbl_30925,asmbl_30930	none	STRG.25937.4,Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057	3	STRG.25937.2,STRG.25937.3,blat.proc3825160.chain_3058,blat.proc3825160.chain_3059	4
scaffold_13	alternate_exon	9326794	9332962	-	asmbl_10017	none	STRG.16199.1,blat.proc3825156.chain_1041	2	STRG.16199.4	1
scaffold_5	alternate_exon	4689531	4689995	-	asmbl_43986	none	Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2077	2	STRG.5929.1,STRG.5929.4,blat.proc3825150.chain_2078,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2082,blat.proc3825150.chain_2085	7
scaffold_14	spliced_intron	12815903	12816062	-	asmbl_13611	none	STRG.17596.1,blat.proc3825156.chain_2442	2	STRG.17596.2,blat.proc3825156.chain_2443	2
scaffold_12	alt_donor	7335637	7335638	+	asmbl_7745,asmbl_7747	none	STRG.14813.1,STRG.14813.2,blat.proc3825170.chain_3351	3	STRG.14813.3,blat.proc3825170.chain_3352	2
scaffold_23	spliced_intron	2032895	2033003	-	asmbl_30690	none	STRG.25678.1	1	Trinity_GG_14358_c0_g1_i4,blat.proc3825160.chain_2841	2
scaffold_23	retained_intron	2039135	2039394	+	asmbl_31374,asmbl_31375	none	blat.proc3825176.chain_2601,blat.proc3825176.chain_2603	2	STRG.25686.1,blat.proc3825176.chain_2602	2
scaffold_9	alternate_exon	4827640	4827675	+	asmbl_53957	none	STRG.11058.2,Trinity_GG_23441_c0_g1_i2,blat.proc3825168.chain_3530	3	STRG.11058.1,blat.proc3825168.chain_3529	2
scaffold_7	alt_donor	2311986	2311987	+	asmbl_49631,asmbl_49632	none	STRG.8670.1,STRG.8670.2,Trinity_GG_22081_c0_g1_i1,blat.proc3825168.chain_1166	4	STRG.8670.3	1
scaffold_15	alt_donor	15443730	15443731	+	asmbl_15793	none	STRG.18935.1,blat.proc3825172.chain_3624	2	STRG.18935.2	1
scaffold_10	retained_intron	922305	922681	+	asmbl_2882	none	blat.proc3825170.chain_666	1	STRG.11967.1,blat.proc3825170.chain_665,blat.proc3825170.chain_668,blat.proc3825170.chain_669	4
scaffold_4	alternate_exon	19579746	19579772	-	asmbl_43458	none	STRG.5543.4	1	STRG.5543.1,STRG.5543.2,STRG.5543.3,blat.proc3825150.chain_1740,blat.proc3825150.chain_1741,blat.proc3825150.chain_1742,blat.proc3825150.chain_1743	7
scaffold_1	spliced_intron	20132712	20132927	+	asmbl_2609	none	blat.proc3825164.chain_1420	1	Trinity_GG_18065_c0_g1_i2,Trinity_GG_18065_c0_g1_i5,blat.proc3825164.chain_1418,blat.proc3825164.chain_1419	4
scaffold_2	alt_donor	20127928	20127929	-	asmbl_23882	none	STRG.2840.1	1	blat.proc3825164.chain_3026	1
scaffold_13	retained_intron	1230177	1230306	+	asmbl_10546,asmbl_10551,asmbl_10555	none	STRG.15494.1,STRG.15494.2,Trinity_GG_25867_c1_g1_i2,Trinity_GG_25867_c1_g1_i3,blat.proc3825172.chain_313,blat.proc3825172.chain_314	6	STRG.15494.3	1
scaffold_27	retained_exon	1774274	1774539	+	asmbl_36037,asmbl_36039	none	STRG.28669.2,Trinity_GG_33182_c0_g1_i1,Trinity_GG_33182_c0_g1_i2	3	STRG.28669.1	1
scaffold_11	spliced_intron	11941482	11941526	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.3	1
scaffold_1	starts_in_intron	9524251	9524251	-	asmbl_544	none	STRG.643.1,blat.proc3825148.chain_638	2	STRG.643.2	1
scaffold_24	alt_donor	10485869	10485870	+	asmbl_32570,asmbl_32576,asmbl_32577	none	STRG.27019.2,STRG.27019.3,Trinity_GG_32229_c1_g1_i2,Trinity_GG_32229_c1_g1_i5,blat.proc3825178.chain_202,blat.proc3825178.chain_203	6	STRG.27019.1,Trinity_GG_32229_c1_g1_i3,Trinity_GG_32229_c1_g1_i4,Trinity_GG_32229_c1_g1_i8,blat.proc3825178.chain_198,blat.proc3825178.chain_199,blat.proc3825178.chain_201	7
scaffold_10	starts_in_intron	5393088	5393088	-	asmbl_4359	none	blat.proc3825154.chain_936	1	STRG.12366.1,STRG.12366.2,blat.proc3825154.chain_934,blat.proc3825154.chain_935,blat.proc3825154.chain_937	5
scaffold_9	alt_acceptor	12632945	12632946	+	asmbl_54450	none	STRG.11586.2	1	STRG.11586.1,STRG.11586.3,STRG.11586.4,STRG.11586.5,blat.proc3825170.chain_401,blat.proc3825170.chain_403,blat.proc3825170.chain_404,blat.proc3825170.chain_405,blat.proc3825170.chain_406	9
scaffold_15	retained_intron	15914237	15914412	+	asmbl_15843	none	Trinity_GG_27681_c0_g1_i2,blat.proc3825172.chain_3550	2	STRG.18976.1,Trinity_GG_27681_c0_g1_i1,blat.proc3825172.chain_3549	3
scaffold_17	starts_in_intron	2706405	2706405	+	asmbl_18689	none	blat.proc3825174.chain_937	1	STRG.20071.1,STRG.20071.2,blat.proc3825174.chain_938	3
scaffold_13	alternate_exon	366291	366456	-	asmbl_9312	none	Trinity_GG_8663_c0_g1_i21,blat.proc3825156.chain_298	2	STRG.15442.3	1
scaffold_23	retained_intron	2585757	2588165	-	asmbl_30743	none	STRG.25725.1,Trinity_GG_14322_c1_g1_i3,blat.proc3825160.chain_2774,blat.proc3825160.chain_2775	4	STRG.25725.2,blat.proc3825160.chain_2777	2
scaffold_13	retained_intron	398875	400388	-	asmbl_9338,asmbl_9341	none	Trinity_GG_8688_c0_g2_i1,Trinity_GG_8688_c0_g2_i2,blat.proc3825156.chain_367,blat.proc3825156.chain_370	4	Trinity_GG_8688_c0_g2_i3,blat.proc3825156.chain_371	2
scaffold_11	starts_in_intron	17503694	17503694	-	asmbl_7276	none	blat.proc3825154.chain_2897	1	STRG.14408.1,STRG.14408.2,Trinity_GG_8024_c0_g1_i2,blat.proc3825154.chain_2898	4
scaffold_4	retained_exon	19372029	19372090	+	asmbl_42137	none	STRG.5525.1,blat.proc3825166.chain_1814	2	blat.proc3825166.chain_1812	1
scaffold_2	alt_donor	14015491	14015492	+	asmbl_24866	none	STRG.2396.3,blat.proc3825164.chain_2573	2	STRG.2396.1,blat.proc3825164.chain_2571	2
scaffold_15	retained_intron	15501981	15502092	+	asmbl_15804	none	STRG.18943.2	1	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602,blat.proc3825172.chain_3603	8
scaffold_2	spliced_intron	6301801	6302073	-	asmbl_23190	none	STRG.1994.1,Trinity_GG_1055_c0_g1_i2,blat.proc3825148.chain_1882	3	Trinity_GG_1055_c0_g1_i1,Trinity_GG_1055_c0_g1_i3,blat.proc3825148.chain_1883,blat.proc3825148.chain_1884	4
scaffold_22	starts_in_intron	4416483	4416483	-	asmbl_29264	none	blat.proc3825160.chain_2000	1	STRG.24869.1,blat.proc3825160.chain_2021	2
scaffold_10	alt_donor	7110355	7110356	+	asmbl_3262	none	STRG.12531.1,blat.proc3825170.chain_1139	2	STRG.12531.2,blat.proc3825170.chain_1136	2
scaffold_18	retained_exon	4463867	4463917	+	asmbl_20524	none	STRG.21238.2,blat.proc3825174.chain_2189	2	STRG.21238.1,blat.proc3825174.chain_2190,blat.proc3825174.chain_2191	3
scaffold_27	alternate_exon	2820674	2821233	+	asmbl_36125	none	STRG.28763.5	1	STRG.28763.1,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1924	5
scaffold_11	ends_in_intron	16659384	16659384	+	asmbl_6171	none	STRG.14365.1,blat.proc3825170.chain_2909	2	STRG.14365.2,Trinity_GG_25230_c2_g1_i1	2
scaffold_22	starts_in_intron	1762105	1762105	-	asmbl_29151	none	blat.proc3825160.chain_1956	1	STRG.24768.1,blat.proc3825160.chain_1957	2
scaffold_5	starts_in_intron	15486056	15486056	+	asmbl_45995,asmbl_45997	none	STRG.6736.2,STRG.6736.3	2	STRG.6736.1	1
scaffold_23	spliced_intron	5849629	5849725	-	asmbl_30949	none	STRG.25956.1,Trinity_GG_14544_c0_g1_i1,blat.proc3825160.chain_3156	3	STRG.25956.2,blat.proc3825160.chain_3157	2
scaffold_23	alt_donor	4226784	4226785	-	asmbl_30847,asmbl_30849,asmbl_30852	none	STRG.25839.1,STRG.25839.2,blat.proc3825160.chain_2987,blat.proc3825160.chain_2988	4	STRG.25839.3,STRG.25839.5,blat.proc3825160.chain_2986,blat.proc3825160.chain_2989	4
scaffold_12	retained_intron	14289988	14290450	-	asmbl_9004,asmbl_9005	none	STRG.15271.1,Trinity_GG_8552_c0_g1_i1,blat.proc3825156.chain_64,blat.proc3825156.chain_65	4	STRG.15271.3,blat.proc3825156.chain_66,blat.proc3825156.chain_67	3
scaffold_5	alt_acceptor	2166979	2166980	-	asmbl_43876	none	STRG.5754.2	1	STRG.5754.3	1
scaffold_22	spliced_intron	9402434	9402476	+	asmbl_30306	none	STRG.25284.3	1	STRG.25284.1	1
scaffold_2	ends_in_intron	17483446	17483446	-	asmbl_23729	none	STRG.2635.2,blat.proc3825148.chain_2561	2	STRG.2635.1,blat.proc3825148.chain_2563	2
scaffold_17	retained_intron	14633366	14633405	+	asmbl_19418	none	STRG.20943.2	1	STRG.20943.1	1
scaffold_8	alt_acceptor	11976919	11976920	-	asmbl_52176	none	STRG.10396.3	1	STRG.10396.2,Trinity_GG_5731_c0_g1_i1,blat.proc3825152.chain_2547	3
scaffold_24	alternate_exon	6726585	6727126	-	asmbl_32971	none	blat.proc3825162.chain_96	1	STRG.26723.1,blat.proc3825162.chain_100,blat.proc3825162.chain_95,blat.proc3825162.chain_98	4
scaffold_23	retained_exon	6331560	6332174	+	asmbl_31616	none	blat.proc3825176.chain_2912	1	STRG.25988.3,blat.proc3825176.chain_2910	2
scaffold_6	alternate_exon	12555119	12555173	-	asmbl_48827	none	STRG.8017.3	1	STRG.8017.1,STRG.8017.2,blat.proc3825152.chain_423,blat.proc3825152.chain_427	4
scaffold_11	ends_in_intron	584438	584438	+	asmbl_5295	none	blat.proc3825170.chain_1845	1	STRG.13274.1,blat.proc3825170.chain_1846	2
scaffold_25	alt_acceptor	8708652	8708653	+	asmbl_33755	none	Trinity_GG_32580_c0_g1_i6,blat.proc3825178.chain_765	2	STRG.27702.1,STRG.27702.2,STRG.27702.3,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_762,blat.proc3825178.chain_763,blat.proc3825178.chain_766,blat.proc3825178.chain_767,blat.proc3825178.chain_768	9
scaffold_11	alt_acceptor	6139756	6139757	-	asmbl_6699,asmbl_6700,asmbl_6701	none	STRG.13679.1,STRG.13679.2,blat.proc3825154.chain_2224,blat.proc3825154.chain_2225,blat.proc3825154.chain_2227	5	blat.proc3825154.chain_2226	1
scaffold_21	retained_intron	11303261	11303360	+	asmbl_28919	none	blat.proc3825176.chain_1704	1	STRG.24604.1	1
scaffold_2	retained_exon	3863661	3863789	-	asmbl_23007	none	STRG.1823.1,blat.proc3825148.chain_1750	2	STRG.1823.2	1
scaffold_5	retained_intron	17368979	17369287	-	asmbl_44802	none	STRG.6915.2,Trinity_GG_3837_c0_g1_i1,blat.proc3825150.chain_3020	3	STRG.6915.1,blat.proc3825150.chain_3019	2
scaffold_6	alt_acceptor	13228969	13228970	+	asmbl_47496,asmbl_47497,asmbl_47498	none	STRG.8084.2,STRG.8084.3,STRG.8084.5,blat.proc3825168.chain_570	4	STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_577	3
scaffold_25	ends_in_intron	8706567	8706567	+	asmbl_33754,asmbl_33758	none	blat.proc3825178.chain_764,blat.proc3825178.chain_771	2	STRG.27702.1,STRG.27702.3,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_762,blat.proc3825178.chain_763,blat.proc3825178.chain_768	6
scaffold_16	alt_acceptor	3995827	3995828	+	asmbl_16161	none	STRG.19208.1,blat.proc3825174.chain_99	2	STRG.19208.2,STRG.19208.3,blat.proc3825174.chain_100,blat.proc3825174.chain_98	4
scaffold_5	ends_in_intron	18254711	18254711	+	asmbl_46229	none	Trinity_GG_21150_c0_g1_i2,blat.proc3825166.chain_3196	2	STRG.6961.1,Trinity_GG_21150_c0_g1_i1,Trinity_GG_21150_c0_g1_i4,blat.proc3825166.chain_3197,blat.proc3825166.chain_3198	5
scaffold_24	starts_in_intron	8958132	8958132	+	asmbl_32466	none	Trinity_GG_32190_c0_g1_i3,blat.proc3825178.chain_112	2	STRG.26918.1,STRG.26918.2,Trinity_GG_32190_c0_g1_i1,Trinity_GG_32190_c0_g1_i2,blat.proc3825178.chain_110,blat.proc3825178.chain_111	6
scaffold_1	ends_in_intron	1908591	1908591	+	asmbl_1519	none	STRG.119.2	1	STRG.119.1,STRG.119.3,blat.proc3825164.chain_170,blat.proc3825164.chain_172	4
scaffold_8	alt_donor	11270823	11270824	-	asmbl_52140	none	STRG.10337.2,blat.proc3825152.chain_2579	2	STRG.10337.1,STRG.10337.3,blat.proc3825152.chain_2577	3
scaffold_1	alt_donor	17861832	17861833	-	asmbl_1066	none	STRG.1250.2	1	STRG.1250.1,blat.proc3825148.chain_1197	2
scaffold_20	starts_in_intron	11487105	11487105	+	asmbl_27062	none	Trinity_GG_30407_c0_g1_i1,blat.proc3825176.chain_853	2	STRG.23656.1,blat.proc3825176.chain_854	2
scaffold_15	retained_exon	12391006	12391047	-	asmbl_14572	none	STRG.18695.3	1	STRG.18695.2	1
scaffold_21	retained_intron	5110399	5110504	-	asmbl_27606	none	blat.proc3825160.chain_1178	1	STRG.24048.1,blat.proc3825160.chain_1177	2
scaffold_6	ends_in_intron	4531957	4531957	-	asmbl_48333	none	blat.proc3825150.chain_3567	1	STRG.7432.2,blat.proc3825150.chain_3568	2
scaffold_2	starts_in_intron	14075090	14075090	+	asmbl_24875	none	STRG.2404.3	1	STRG.2404.1,STRG.2404.2	2
scaffold_28	retained_intron	5228162	5228281	-	asmbl_38258	none	blat.proc3825162.chain_2844	1	STRG.29674.2,blat.proc3825162.chain_2843	2
scaffold_14	ends_in_intron	15243477	15243477	+	asmbl_12579	none	blat.proc3825172.chain_2464	1	STRG.17751.1,blat.proc3825172.chain_2463	2
scaffold_3	spliced_intron	19887827	19887892	-	asmbl_39678	none	STRG.4107.3	1	STRG.4107.2,Trinity_GG_2250_c1_g1_i1,blat.proc3825150.chain_262	3
scaffold_1	alt_acceptor	11546602	11546603	+	asmbl_2116	none	STRG.763.1,Trinity_GG_17785_c0_g1_i1,blat.proc3825164.chain_905	3	STRG.763.2	1
scaffold_16	alternate_exon	12017960	12018115	+	asmbl_16627	none	Trinity_GG_28082_c0_g1_i3,blat.proc3825174.chain_576	2	STRG.19728.1	1
scaffold_1	ends_in_intron	3584669	3584669	+	asmbl_1609	none	Trinity_GG_17452_c0_g1_i1,blat.proc3825164.chain_307	2	STRG.226.1,Trinity_GG_17452_c0_g1_i2,blat.proc3825164.chain_308	3
scaffold_13	starts_in_intron	15254463	15254463	-	asmbl_10236	none	blat.proc3825156.chain_1396	1	STRG.16570.1	1
scaffold_4	alternate_exon	3379590	3379819	+	asmbl_41188,asmbl_41189	none	STRG.4276.1,STRG.4276.2,blat.proc3825166.chain_748,blat.proc3825166.chain_749	4	blat.proc3825166.chain_751	1
scaffold_13	spliced_intron	5136	5411	+	asmbl_10449,asmbl_10452	none	STRG.15424.2,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i4,blat.proc3825172.chain_134,blat.proc3825172.chain_139	5	STRG.15424.1,STRG.15424.3,Trinity_GG_25787_c0_g1_i1,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,Trinity_GG_25787_c0_g1_i8,blat.proc3825172.chain_135,blat.proc3825172.chain_137,blat.proc3825172.chain_138,blat.proc3825172.chain_141	10
scaffold_3	retained_intron	14425017	14426154	+	asmbl_40519,asmbl_40520	none	STRG.3788.2,Trinity_GG_19450_c0_g1_i1,Trinity_GG_19450_c0_g1_i2,Trinity_GG_19450_c0_g1_i3,blat.proc3825166.chain_304,blat.proc3825166.chain_305,blat.proc3825166.chain_306	7	STRG.3788.1,Trinity_GG_19450_c0_g1_i4,blat.proc3825166.chain_302	3
scaffold_21	spliced_intron	9925390	9925585	-	asmbl_27992	none	STRG.24461.5	1	STRG.24461.2,blat.proc3825160.chain_1643	2
scaffold_11	starts_in_intron	9028928	9028928	-	asmbl_6902,asmbl_6905,asmbl_6907	none	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406	4	blat.proc3825154.chain_2407	1
scaffold_4	alternate_exon	7306509	7306578	+	asmbl_41487	none	STRG.4560.1,blat.proc3825166.chain_1031	2	Trinity_GG_19854_c1_g1_i2,blat.proc3825166.chain_1032	2
scaffold_12	starts_in_intron	4104395	4104395	+	asmbl_7581	none	Trinity_GG_25378_c0_g1_i2,blat.proc3825170.chain_3162	2	STRG.14597.1,STRG.14597.3	2
scaffold_14	starts_in_intron	6909020	6909020	+	asmbl_12111	none	STRG.17131.3,Trinity_GG_26743_c0_g1_i2,blat.proc3825172.chain_1911	3	STRG.17131.1,STRG.17131.2,blat.proc3825172.chain_1908,blat.proc3825172.chain_1909,blat.proc3825172.chain_1912	5
scaffold_21	retained_intron	3189776	3190483	+	asmbl_28476	none	blat.proc3825176.chain_1092	1	STRG.23947.1,blat.proc3825176.chain_1093	2
scaffold_5	retained_intron	8776863	8776953	-	asmbl_44242	none	Trinity_GG_3504_c0_g1_i1,blat.proc3825150.chain_2429	2	STRG.6218.1,blat.proc3825150.chain_2430	2
scaffold_18	spliced_intron	6757958	6758114	-	asmbl_19912	none	STRG.21381.1,blat.proc3825158.chain_2323	2	STRG.21381.2,Trinity_GG_11979_c0_g1_i1,blat.proc3825158.chain_2322	3
scaffold_2	retained_intron	12727849	12728348	-	asmbl_23479	none	blat.proc3825148.chain_2309	1	STRG.2328.1,blat.proc3825148.chain_2308	2
scaffold_2	starts_in_intron	5971837	5971837	-	asmbl_23164	none	STRG.1975.2,blat.proc3825148.chain_1939	2	STRG.1975.1,blat.proc3825148.chain_1938	2
scaffold_4	retained_exon	5651380	5651422	-	asmbl_42616,asmbl_42619,asmbl_42620,asmbl_42625,asmbl_42627	none	STRG.4472.1,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_666,blat.proc3825150.chain_667	6	STRG.4472.4,blat.proc3825150.chain_665	2
scaffold_28	retained_exon	1008211	1008357	-	asmbl_37957	none	STRG.29311.2,blat.proc3825162.chain_2392	2	STRG.29311.1,blat.proc3825162.chain_2391	2
scaffold_10	retained_exon	5393824	5393937	-	asmbl_4357,asmbl_4358	none	STRG.12366.1,STRG.12366.2,blat.proc3825154.chain_934,blat.proc3825154.chain_937	4	blat.proc3825154.chain_935	1
scaffold_11	ends_in_intron	6535914	6535914	-	asmbl_6721	none	blat.proc3825154.chain_2272	1	STRG.13702.1,STRG.13702.2,blat.proc3825154.chain_2271,blat.proc3825154.chain_2273	4
scaffold_3	ends_in_intron	14775494	14775494	-	asmbl_39421	none	Trinity_GG_2123_c0_g1_i4,blat.proc3825150.chain_36	2	STRG.3822.1,STRG.3822.2,blat.proc3825150.chain_33,blat.proc3825150.chain_35	4
scaffold_1	spliced_intron	19042133	19042344	+	asmbl_2579,asmbl_2581	none	STRG.1335.1,STRG.1335.5	2	Trinity_GG_18101_c0_g1_i2,blat.proc3825164.chain_1480	2
scaffold_28	alt_acceptor	3216636	3216637	-	asmbl_38140	none	STRG.29535.1,blat.proc3825162.chain_2654	2	STRG.29535.2,blat.proc3825162.chain_2653	2
scaffold_15	spliced_intron	2823948	2824025	-	asmbl_14052,asmbl_14053	none	STRG.18075.2,Trinity_GG_10175_c0_g2_i1,Trinity_GG_10175_c0_g2_i2,blat.proc3825156.chain_2921	4	STRG.18075.1	1
scaffold_19	retained_intron	13011394	13011749	-	asmbl_22579	none	STRG.22624.2,blat.proc3825158.chain_3457	2	STRG.22624.1,blat.proc3825158.chain_3455,blat.proc3825158.chain_3456	3
scaffold_6	alt_acceptor	10170457	10170458	+	asmbl_47263	none	STRG.7850.1	1	STRG.7850.2	1
scaffold_18	starts_in_intron	853890	853890	-	asmbl_19605	none	blat.proc3825158.chain_1961	1	STRG.21011.1,blat.proc3825158.chain_1959,blat.proc3825158.chain_1960	3
scaffold_3	skipped_exon	10276182	10277684	+	asmbl_40248,asmbl_40251	none	STRG.3467.2,blat.proc3825164.chain_3731,blat.proc3825164.chain_3733	3	STRG.3467.1,blat.proc3825164.chain_3728,blat.proc3825164.chain_3734	3
scaffold_18	retained_intron	1862478	1862581	-	asmbl_19648	none	STRG.21074.2,Trinity_GG_11788_c0_g1_i3,blat.proc3825158.chain_2000	3	STRG.21074.1,STRG.21074.3,blat.proc3825158.chain_1998,blat.proc3825158.chain_1999	4
scaffold_15	alternate_exon	13312486	13312527	+	asmbl_15623	none	STRG.18763.2,Trinity_GG_27611_c0_g1_i1,blat.proc3825172.chain_3414	3	STRG.18763.1	1
scaffold_25	ends_in_intron	800495	800495	-	asmbl_34004	none	STRG.27136.4	1	STRG.27136.1,STRG.27136.3,blat.proc3825162.chain_511	3
scaffold_20	spliced_intron	5922950	5923078	-	asmbl_25788,asmbl_25790,asmbl_25791,asmbl_25792	none	STRG.23199.2,STRG.23199.3,STRG.23199.4,blat.proc3825160.chain_276,blat.proc3825160.chain_278,blat.proc3825160.chain_280,blat.proc3825160.chain_281	7	STRG.23199.1	1
scaffold_27	alt_acceptor	2903102	2903103	-	asmbl_36869	none	STRG.28776.2	1	STRG.28776.1,Trinity_GG_16082_c0_g1_i2,blat.proc3825162.chain_1966	3
scaffold_20	retained_intron	6975652	6975749	+	asmbl_26690	none	blat.proc3825176.chain_445	1	STRG.23262.2,blat.proc3825176.chain_446	2
scaffold_3	alt_acceptor	13838275	13838276	+	asmbl_40461,asmbl_40463,asmbl_40464	none	STRG.3730.1,Trinity_GG_19394_c0_g1_i1,Trinity_GG_19394_c0_g1_i4,Trinity_GG_19394_c0_g1_i6,blat.proc3825166.chain_206,blat.proc3825166.chain_208,blat.proc3825166.chain_209,blat.proc3825166.chain_210	8	Trinity_GG_19394_c0_g1_i3,blat.proc3825166.chain_207	2
scaffold_27	spliced_intron	638380	638592	-	asmbl_36708	none	Trinity_GG_16002_c1_g1_i5,blat.proc3825162.chain_1842	2	Trinity_GG_16002_c1_g1_i3,blat.proc3825162.chain_1844	2
scaffold_16	spliced_intron	4095539	4095747	+	asmbl_16169,asmbl_16174	none	STRG.19226.1,STRG.19226.2	2	Trinity_GG_27809_c0_g1_i8	1
scaffold_9	retained_intron	14817894	14818073	-	asmbl_55495,asmbl_55496,asmbl_55497,asmbl_55502,asmbl_55503,asmbl_55504	none	STRG.11702.2,STRG.11702.3,STRG.11702.4,STRG.11702.6,Trinity_GG_6457_c0_g1_i1,blat.proc3825154.chain_159,blat.proc3825154.chain_161,blat.proc3825154.chain_163,blat.proc3825154.chain_164	9	STRG.11702.5	1
scaffold_19	retained_exon	5373273	5373362	+	asmbl_21369	none	STRG.22100.1,blat.proc3825174.chain_3118	2	STRG.22100.2	1
scaffold_5	spliced_intron	12258749	12258866	-	asmbl_44443	none	STRG.6459.1,blat.proc3825150.chain_2631	2	STRG.6459.2,blat.proc3825150.chain_2630	2
scaffold_1	spliced_intron	855428	855520	+	asmbl_1429	none	STRG.43.4	1	STRG.43.1,STRG.43.2,STRG.43.3,Trinity_GG_17353_c0_g1_i1,Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142,blat.proc3825164.chain_147	7
scaffold_9	retained_exon	3149642	3149822	+	asmbl_53879	none	STRG.10933.1,blat.proc3825168.chain_3460	2	STRG.10933.2,Trinity_GG_23392_c0_g1_i1,blat.proc3825168.chain_3459	3
scaffold_9	alt_donor	18446645	18446646	-	asmbl_55711	none	STRG.11889.1,blat.proc3825154.chain_393	2	STRG.11889.2	1
scaffold_13	starts_in_intron	6685950	6685950	+	asmbl_10963	none	blat.proc3825172.chain_695	1	STRG.15961.1,Trinity_GG_26071_c0_g1_i1,blat.proc3825172.chain_694	3
scaffold_7	retained_exon	1439519	1440370	-	asmbl_50727	none	STRG.8647.1	1	STRG.8647.2	1
scaffold_20	starts_in_intron	11411700	11411700	+	asmbl_27042	none	Trinity_GG_30373_c0_g1_i1,blat.proc3825176.chain_790	2	STRG.23647.1,Trinity_GG_30373_c0_g1_i2,blat.proc3825176.chain_789	3
scaffold_25	retained_exon	7342152	7342277	+	asmbl_33671	none	STRG.27589.1,Trinity_GG_32527_c1_g1_i1,blat.proc3825178.chain_699	3	STRG.27589.2	1
scaffold_16	spliced_intron	12642114	12642264	-	asmbl_17397	none	STRG.19758.2,blat.proc3825158.chain_800	2	Trinity_GG_11067_c0_g1_i6,blat.proc3825158.chain_799	2
scaffold_1	skipped_exon	3270179	3270864	-	asmbl_140,asmbl_142	none	STRG.204.1,blat.proc3825148.chain_203,blat.proc3825148.chain_204	3	STRG.204.3	1
scaffold_1	retained_intron	6830779	6830889	-	asmbl_385	none	blat.proc3825148.chain_462	1	STRG.474.1,STRG.474.2,blat.proc3825148.chain_463,blat.proc3825148.chain_465	4
scaffold_18	starts_in_intron	2081460	2081460	+	asmbl_20401,asmbl_20402	none	STRG.21110.2,STRG.21110.3,blat.proc3825174.chain_2026,blat.proc3825174.chain_2028	4	STRG.21110.1,blat.proc3825174.chain_2027	2
scaffold_4	alternate_exon	4415345	4417794	+	asmbl_41250,asmbl_41258	none	Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_853	3	blat.proc3825166.chain_844	1
scaffold_22	starts_in_intron	5999862	5999862	+	asmbl_30082	none	blat.proc3825176.chain_2069	1	blat.proc3825176.chain_2067,blat.proc3825176.chain_2068	2
scaffold_11	spliced_intron	7049578	7049788	+	asmbl_5644,asmbl_5647	none	STRG.13733.1,STRG.13733.4,Trinity_GG_24878_c0_g1_i2,blat.proc3825170.chain_2272	4	Trinity_GG_24878_c0_g1_i6,blat.proc3825170.chain_2271	2
scaffold_23	starts_in_intron	10990920	10990920	-	asmbl_31186	none	Trinity_GG_14683_c0_g1_i5,blat.proc3825160.chain_3396	2	STRG.26306.2	1
scaffold_20	spliced_intron	10384363	10384667	+	asmbl_26954,asmbl_26961	none	STRG.23583.1,STRG.23583.2,Trinity_GG_30302_c0_g1_i1,blat.proc3825176.chain_670	4	blat.proc3825176.chain_672	1
scaffold_24	spliced_intron	3701651	3701884	+	asmbl_32157,asmbl_32158	none	STRG.26557.1,blat.proc3825176.chain_3489,blat.proc3825176.chain_3490,blat.proc3825176.chain_3491,blat.proc3825176.chain_3492	5	Trinity_GG_31986_c0_g1_i6,blat.proc3825176.chain_3493	2
scaffold_2	starts_in_intron	7891764	7891764	+	asmbl_24591,asmbl_24592	none	blat.proc3825164.chain_2203,blat.proc3825164.chain_2211	2	STRG.2085.1,STRG.2085.2,STRG.2085.3,Trinity_GG_18472_c0_g1_i3,blat.proc3825164.chain_2201,blat.proc3825164.chain_2202,blat.proc3825164.chain_2205,blat.proc3825164.chain_2208,blat.proc3825164.chain_2209	9
scaffold_3	alt_donor	11978536	11978537	+	asmbl_40384	none	STRG.3620.1,Trinity_GG_19308_c0_g1_i2,blat.proc3825166.chain_49	3	STRG.3620.2,Trinity_GG_19308_c0_g1_i1,blat.proc3825166.chain_50	3
scaffold_27	starts_in_intron	2818111	2818111	+	asmbl_36121	none	Trinity_GG_33230_c0_g1_i5,blat.proc3825178.chain_1926	2	STRG.28763.1,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1924	5
scaffold_13	alt_donor	3746398	3746399	+	asmbl_10742,asmbl_10744	none	STRG.15702.1,Trinity_GG_25936_c0_g1_i4,blat.proc3825172.chain_435	3	STRG.15702.2,Trinity_GG_25936_c0_g1_i1,blat.proc3825172.chain_434	3
scaffold_28	alternate_exon	8316598	8316646	-	asmbl_38454	none	STRG.29908.2	1	STRG.29908.1,STRG.29908.3,blat.proc3825162.chain_3098	3
scaffold_15	alt_acceptor	4786799	4786800	-	asmbl_14159	none	STRG.18195.2,blat.proc3825156.chain_3029	2	STRG.18195.1	1
scaffold_13	starts_in_intron	15200363	15200363	-	asmbl_10232	none	blat.proc3825156.chain_1389	1	STRG.16564.1,blat.proc3825156.chain_1388	2
scaffold_2	alt_acceptor	3517727	3517728	-	asmbl_22985	none	STRG.1786.1	1	STRG.1786.2	1
scaffold_17	alt_donor	14633326	14633327	+	asmbl_19420	none	blat.proc3825174.chain_1755	1	STRG.20943.1,STRG.20943.3	2
scaffold_10	retained_intron	13458298	13458388	-	asmbl_4881	none	STRG.12936.2,blat.proc3825154.chain_1527	2	STRG.12936.1,blat.proc3825154.chain_1526	2
scaffold_20	alt_donor	10383223	10383224	+	asmbl_26958,asmbl_26959,asmbl_26960,asmbl_26961	none	STRG.23583.2,STRG.23583.3,STRG.23583.4,blat.proc3825176.chain_672	4	STRG.23583.1,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_670,blat.proc3825176.chain_671	5
scaffold_8	alt_acceptor	9870747	9870748	+	asmbl_53117,asmbl_53118,asmbl_53119,asmbl_53120,asmbl_53121,asmbl_53124,asmbl_53125	none	STRG.10233.2,blat.proc3825168.chain_2815,blat.proc3825168.chain_2816,blat.proc3825168.chain_2817,blat.proc3825168.chain_2818,blat.proc3825168.chain_2819,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	8	STRG.10233.5,STRG.10233.6	2
scaffold_4	retained_intron	4121063	4121376	-	asmbl_42497,asmbl_42498,asmbl_42499	none	STRG.4329.3,Trinity_GG_2440_c0_g1_i3,blat.proc3825150.chain_594,blat.proc3825150.chain_595	4	STRG.4329.1,STRG.4329.2,blat.proc3825150.chain_593	3
scaffold_15	alternate_exon	15353387	15353491	+	asmbl_15755,asmbl_15756,asmbl_15760,asmbl_15761	none	STRG.18922.1,STRG.18922.2,blat.proc3825172.chain_3563,blat.proc3825172.chain_3564,blat.proc3825172.chain_3566	5	STRG.18922.3,Trinity_GG_27686_c0_g1_i4,Trinity_GG_27686_c0_g1_i7,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3561,blat.proc3825172.chain_3565	7
scaffold_3	alt_donor	10983714	10983715	-	asmbl_39131	none	STRG.3536.2	1	STRG.3536.1	1
scaffold_5	ends_in_intron	10170363	10170363	+	asmbl_45664	none	Trinity_GG_20748_c1_g1_i2,blat.proc3825166.chain_2510	2	STRG.6320.1,blat.proc3825166.chain_2512	2
scaffold_2	starts_in_intron	4599462	4599462	+	asmbl_24371	none	STRG.1885.2	1	STRG.1885.1,blat.proc3825164.chain_1944	2
scaffold_1	retained_exon	14201385	14201845	+	asmbl_2345	none	Trinity_GG_17929_c0_g1_i5,blat.proc3825164.chain_1191	2	STRG.1008.1,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1192	5
scaffold_16	starts_in_intron	4089060	4089060	+	asmbl_16171	none	blat.proc3825174.chain_58	1	STRG.19226.1	1
scaffold_20	alt_donor	12072266	12072267	+	asmbl_27112	none	STRG.23705.2,blat.proc3825176.chain_899	2	STRG.23705.1,blat.proc3825176.chain_898,blat.proc3825176.chain_900	3
scaffold_16	alt_acceptor	8291494	8291495	+	asmbl_16386	none	STRG.19460.2	1	STRG.19460.1,blat.proc3825174.chain_359	2
scaffold_3	retained_intron	14844379	14844569	+	asmbl_40554	none	STRG.3832.2	1	STRG.3832.1,blat.proc3825166.chain_320	2
scaffold_8	starts_in_intron	3603907	3603907	+	asmbl_52782,asmbl_52783	none	STRG.9857.3,Trinity_GG_22801_c0_g1_i3,blat.proc3825168.chain_2401,blat.proc3825168.chain_2402	4	STRG.9857.2,blat.proc3825168.chain_2403	2
scaffold_2	spliced_intron	7923087	7923870	-	asmbl_23295,asmbl_23296,asmbl_23298,asmbl_23299	none	STRG.2089.1,blat.proc3825148.chain_2075,blat.proc3825148.chain_2077,blat.proc3825148.chain_2078,blat.proc3825148.chain_2079	5	blat.proc3825148.chain_2076	1
scaffold_11	alt_donor	4751476	4751477	+	asmbl_5516	none	STRG.13573.2	1	STRG.13573.1,blat.proc3825170.chain_2102	2
scaffold_3	starts_in_intron	3751285	3751285	+	asmbl_39974	none	blat.proc3825164.chain_3338	1	STRG.3102.1,blat.proc3825164.chain_3340	2
scaffold_18	spliced_intron	8400595	8401901	+	asmbl_20831	none	STRG.21513.1,blat.proc3825174.chain_2580	2	STRG.21513.4,blat.proc3825174.chain_2583	2
scaffold_2	retained_exon	17614275	17614349	+	asmbl_25185	none	STRG.2653.1,Trinity_GG_18824_c1_g1_i1,blat.proc3825164.chain_2942,blat.proc3825164.chain_2945	4	STRG.2653.2	1
scaffold_7	spliced_intron	5928121	5928803	+	asmbl_49828	none	STRG.8902.3,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1375	3	STRG.8902.1,STRG.8902.4,Trinity_GG_22209_c0_g1_i3,blat.proc3825168.chain_1373	4
scaffold_8	alt_acceptor	11853027	11853028	+	asmbl_53277	none	STRG.10390.2	1	STRG.10390.4,STRG.10390.5	2
scaffold_22	spliced_intron	4404848	4404976	-	asmbl_29255	none	blat.proc3825160.chain_2001	1	STRG.24862.1,blat.proc3825160.chain_1999	2
scaffold_28	alternate_exon	5391484	5392602	+	asmbl_37585,asmbl_37587	none	STRG.29687.3,Trinity_GG_33768_c0_g1_i4,blat.proc3825178.chain_2866	3	blat.proc3825178.chain_2870	1
scaffold_8	retained_intron	16142261	16142410	-	asmbl_52367	none	blat.proc3825152.chain_2832	1	STRG.10604.4,blat.proc3825152.chain_2833	2
scaffold_23	skipped_exon	6330942	6332799	+	asmbl_31613	none	STRG.25988.3,blat.proc3825176.chain_2910	2	blat.proc3825176.chain_2912	1
scaffold_27	spliced_intron	5049610	5049786	-	asmbl_36982,asmbl_36983	none	STRG.28938.4,STRG.28938.5	2	STRG.28938.1,Trinity_GG_16227_c0_g1_i2,blat.proc3825162.chain_2175	3
scaffold_16	alt_donor	6189722	6189723	+	asmbl_16290	none	STRG.19369.1,Trinity_GG_27882_c0_g1_i1,Trinity_GG_27882_c0_g1_i3,blat.proc3825174.chain_210	4	STRG.19369.2,Trinity_GG_27882_c0_g1_i2,blat.proc3825174.chain_208	3
scaffold_14	alternate_exon	15346007	15346341	-	asmbl_13716	none	blat.proc3825156.chain_2608	1	STRG.17765.3,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2610	3
scaffold_16	spliced_intron	290653	291015	+	asmbl_16016,asmbl_16017,asmbl_16018,asmbl_16019,asmbl_16020	none	STRG.19019.1,STRG.19019.2,Trinity_GG_27744_c0_g1_i2,blat.proc3825172.chain_3687,blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	6	STRG.19019.3,Trinity_GG_27744_c0_g1_i11,blat.proc3825172.chain_3690	3
scaffold_4	starts_in_intron	2194078	2194078	-	asmbl_42391	none	Trinity_GG_2344_c0_g1_i1,blat.proc3825150.chain_432	2	STRG.4218.1,blat.proc3825150.chain_431	2
scaffold_17	skipped_exon	603900	606582	-	asmbl_17633	none	STRG.19912.1	1	STRG.19912.2,STRG.19912.3,STRG.19912.4	3
scaffold_23	alt_acceptor	7941280	7941281	-	asmbl_31065	none	STRG.26099.3	1	STRG.26099.2	1
scaffold_6	retained_intron	92644	92783	+	asmbl_46633	none	STRG.7066.2,Trinity_GG_21205_c0_g1_i1,blat.proc3825166.chain_3276	3	STRG.7066.1,Trinity_GG_21205_c0_g1_i2,blat.proc3825166.chain_3275	3
scaffold_14	alt_acceptor	8405948	8405949	-	asmbl_13307,asmbl_13308	none	STRG.17278.1,STRG.17278.2,blat.proc3825156.chain_2032	3	STRG.17278.3,STRG.17278.4	2
scaffold_13	retained_exon	15101050	15101105	+	asmbl_11486	none	blat.proc3825172.chain_1351	1	STRG.16559.1,blat.proc3825172.chain_1352	2
scaffold_18	alt_donor	599995	599996	-	asmbl_19592	none	STRG.20998.2	1	STRG.20998.1,blat.proc3825158.chain_1955,blat.proc3825158.chain_1956	3
scaffold_9	alt_donor	12113353	12113354	+	asmbl_54413	none	STRG.11537.3	1	STRG.11537.1,blat.proc3825170.chain_366,blat.proc3825170.chain_368,blat.proc3825170.chain_369	4
scaffold_6	alternate_exon	877833	878698	+	asmbl_46682	none	STRG.7158.1	1	STRG.7158.2	1
scaffold_28	ends_in_intron	9441867	9441867	-	asmbl_38516	none	blat.proc3825162.chain_3167	1	STRG.29974.1,blat.proc3825162.chain_3166	2
scaffold_15	starts_in_intron	1708162	1708162	+	asmbl_15033,asmbl_15036	none	STRG.17986.2,blat.proc3825172.chain_2714,blat.proc3825172.chain_2715	3	STRG.17986.1,blat.proc3825172.chain_2710,blat.proc3825172.chain_2711	3
scaffold_17	alt_acceptor	10000186	10000187	+	asmbl_19150	none	STRG.20614.2	1	STRG.20614.1,blat.proc3825174.chain_1474,blat.proc3825174.chain_1475	3
scaffold_26	alt_donor	9846960	9846961	+	asmbl_35282,asmbl_35284,asmbl_35288	none	STRG.28546.1,blat.proc3825178.chain_1575,blat.proc3825178.chain_1581	3	STRG.28546.2,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1576,blat.proc3825178.chain_1577,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580	10
scaffold_19	spliced_intron	12246328	12246698	-	asmbl_22468,asmbl_22470	none	STRG.22552.2,blat.proc3825158.chain_3309,blat.proc3825158.chain_3311	3	STRG.22552.1,blat.proc3825158.chain_3307,blat.proc3825158.chain_3310,blat.proc3825158.chain_3313	4
scaffold_16	retained_intron	14552847	14553116	+	asmbl_16687,asmbl_16688,asmbl_16691	none	STRG.19851.3,Trinity_GG_28180_c0_g1_i1,Trinity_GG_28180_c0_g1_i6,blat.proc3825174.chain_731,blat.proc3825174.chain_732	5	STRG.19851.1,STRG.19851.2,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i3,blat.proc3825174.chain_729,blat.proc3825174.chain_730	6
scaffold_18	ends_in_intron	7868203	7868203	+	asmbl_20802,asmbl_20804	none	Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i18,blat.proc3825174.chain_2450,blat.proc3825174.chain_2458	4	STRG.21488.1,STRG.21488.2,STRG.21488.3,STRG.21488.5,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2452,blat.proc3825174.chain_2456,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	12
scaffold_14	retained_intron	11391513	11391625	-	asmbl_13477,asmbl_13478,asmbl_13479,asmbl_13481	none	STRG.17477.1,STRG.17477.3,STRG.17477.4,blat.proc3825156.chain_2291,blat.proc3825156.chain_2292,blat.proc3825156.chain_2295	6	STRG.17477.2,Trinity_GG_9803_c0_g1_i5,blat.proc3825156.chain_2293	3
scaffold_25	spliced_intron	7220041	7220502	-	asmbl_34390	none	STRG.27575.2	1	blat.proc3825162.chain_971	1
scaffold_3	spliced_intron	7286007	7286114	-	asmbl_38961	none	STRG.3330.1,blat.proc3825148.chain_3214	2	STRG.3330.2,STRG.3330.3,blat.proc3825148.chain_3215,blat.proc3825148.chain_3216	4
scaffold_8	alt_acceptor	14147795	14147796	-	asmbl_52298	none	STRG.10522.1,blat.proc3825152.chain_2757	2	STRG.10522.2,STRG.10522.3,blat.proc3825152.chain_2758	3
scaffold_12	alternate_exon	2662025	2662179	+	asmbl_7509	none	blat.proc3825170.chain_3089	1	STRG.14507.1,STRG.14507.3,blat.proc3825170.chain_3085,blat.proc3825170.chain_3088	4
scaffold_28	spliced_intron	5233036	5233314	-	asmbl_38267,asmbl_38268,asmbl_38271,asmbl_38272	none	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2780,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	6	blat.proc3825162.chain_2781,blat.proc3825162.chain_2786	2
scaffold_11	alternate_exon	8707717	8707898	-	asmbl_6868	none	STRG.13900.2	1	STRG.13900.1,Trinity_GG_7758_c1_g1_i1,blat.proc3825154.chain_2424	3
scaffold_8	retained_intron	4081520	4081648	+	asmbl_52813	none	blat.proc3825168.chain_2479	1	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2480,blat.proc3825168.chain_2481	4
scaffold_2	alternate_exon	7881050	7881454	+	asmbl_24583	none	Trinity_GG_18501_c0_g1_i20,blat.proc3825164.chain_2293	2	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2
scaffold_8	retained_intron	7804828	7805076	-	asmbl_51926,asmbl_51928	none	blat.proc3825152.chain_2313,blat.proc3825152.chain_2318	2	STRG.10100.1,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316,blat.proc3825152.chain_2317	5
scaffold_10	skipped_exon	1492524	1494142	-	asmbl_4063	none	STRG.12025.1,blat.proc3825154.chain_513	2	STRG.12025.3	1
scaffold_23	spliced_intron	6633740	6633978	+	asmbl_31634,asmbl_31637,asmbl_31638,asmbl_31639,asmbl_31640	none	STRG.26012.1,STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897,blat.proc3825176.chain_2898	6	blat.proc3825176.chain_2895	1
scaffold_3	ends_in_intron	13990270	13990270	+	asmbl_40480,asmbl_40483	none	STRG.3744.3,Trinity_GG_19386_c0_g2_i1,blat.proc3825166.chain_192	3	STRG.3744.1,STRG.3744.2,STRG.3744.4,STRG.3744.5,Trinity_GG_19386_c0_g1_i2,blat.proc3825166.chain_189,blat.proc3825166.chain_190,blat.proc3825166.chain_191	8
scaffold_2	retained_intron	14220832	14221010	-	asmbl_23582	none	blat.proc3825148.chain_2355	1	STRG.2418.2,blat.proc3825148.chain_2354,blat.proc3825148.chain_2356,blat.proc3825148.chain_2357,blat.proc3825148.chain_2358	5
scaffold_19	starts_in_intron	12670818	12670818	+	asmbl_21819	none	Trinity_GG_29802_c0_g1_i3,blat.proc3825174.chain_3613	2	STRG.22581.1,Trinity_GG_29802_c0_g1_i1,blat.proc3825174.chain_3612,blat.proc3825174.chain_3614	4
scaffold_23	retained_exon	7684372	7685166	+	asmbl_31714,asmbl_31715	none	STRG.26090.2,STRG.26090.3,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3053	6	STRG.26090.4	1
scaffold_17	retained_intron	2720917	2721238	+	asmbl_18692	none	STRG.20072.3,Trinity_GG_28282_c0_g1_i1,blat.proc3825174.chain_905	3	STRG.20072.1,STRG.20072.2,Trinity_GG_28282_c0_g1_i2,blat.proc3825174.chain_904	4
scaffold_18	ends_in_intron	7234430	7234430	+	asmbl_20727	none	Trinity_GG_29143_c0_g2_i1,blat.proc3825174.chain_2446	2	STRG.21429.1,STRG.21429.2,STRG.21429.3,blat.proc3825174.chain_2442,blat.proc3825174.chain_2443,blat.proc3825174.chain_2444,blat.proc3825174.chain_2445	7
scaffold_19	retained_intron	6213363	6213442	+	asmbl_21402	none	blat.proc3825174.chain_3105	1	STRG.22153.3,blat.proc3825174.chain_3104	2
scaffold_1	alt_acceptor	4567861	4567862	-	asmbl_201	none	STRG.285.4	1	STRG.285.1,STRG.285.2,blat.proc3825148.chain_153	3
scaffold_16	spliced_intron	7702579	7702690	-	asmbl_17192	none	STRG.19419.2	1	Trinity_GG_10894_c1_g1_i1,blat.proc3825158.chain_549	2
scaffold_14	starts_in_intron	9191753	9191753	+	asmbl_12274	none	Trinity_GG_26839_c0_g1_i2,blat.proc3825172.chain_2083	2	STRG.17321.1,STRG.17321.2,blat.proc3825172.chain_2082,blat.proc3825172.chain_2084,blat.proc3825172.chain_2085	5
scaffold_11	starts_in_intron	9124048	9124048	+	asmbl_5871,asmbl_5872	none	blat.proc3825170.chain_2531,blat.proc3825170.chain_2533	2	STRG.13952.1,STRG.13952.2,blat.proc3825170.chain_2529,blat.proc3825170.chain_2530,blat.proc3825170.chain_2532	5
scaffold_9	alternate_exon	11829318	11829387	-	asmbl_55318	none	blat.proc3825152.chain_3676	1	STRG.11499.1,STRG.11499.2	2
scaffold_4	spliced_intron	4433640	4433862	+	asmbl_41268,asmbl_41269	none	STRG.4342.2,STRG.4342.3,blat.proc3825166.chain_792	3	STRG.4342.1,blat.proc3825166.chain_791	2
scaffold_5	retained_intron	108210	108423	-	asmbl_43753,asmbl_43754	none	STRG.5574.1,Trinity_GG_3150_c0_g1_i2	2	STRG.5574.2	1
scaffold_27	retained_exon	6195097	6195177	+	asmbl_36379	none	STRG.29014.3	1	STRG.29014.1,STRG.29014.4	2
scaffold_3	alt_acceptor	947653	947654	-	asmbl_38687	none	blat.proc3825148.chain_2841	1	STRG.2918.1	1
scaffold_7	alt_donor	5927708	5927709	+	asmbl_49827,asmbl_49828,asmbl_49829	none	STRG.8902.1,STRG.8902.2,STRG.8902.3,Trinity_GG_22209_c0_g1_i3,Trinity_GG_22209_c0_g1_i4,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1373,blat.proc3825168.chain_1375,blat.proc3825168.chain_1376	9	STRG.8902.4,blat.proc3825168.chain_1372	2
scaffold_11	retained_intron	5651474	5651835	+	asmbl_5574	none	blat.proc3825170.chain_2169	1	STRG.13632.1,blat.proc3825170.chain_2167	2
scaffold_3	retained_intron	3271219	3271370	-	asmbl_38763	none	Trinity_GG_1668_c0_g1_i5,blat.proc3825148.chain_2949	2	STRG.3073.3,blat.proc3825148.chain_2950,blat.proc3825148.chain_2951	3
scaffold_19	ends_in_intron	6404721	6404721	+	asmbl_21408	none	blat.proc3825174.chain_3136	1	STRG.22168.1,Trinity_GG_29532_c0_g1_i2,Trinity_GG_29532_c0_g1_i3,blat.proc3825174.chain_3137,blat.proc3825174.chain_3138	5
scaffold_1	ends_in_intron	988964	988964	+	asmbl_1449	none	Trinity_GG_17318_c0_g1_i1,blat.proc3825164.chain_79	2	STRG.56.1,Trinity_GG_17318_c0_g1_i2,blat.proc3825164.chain_80	3
scaffold_25	spliced_intron	9090794	9090907	+	asmbl_33780,asmbl_33781	none	STRG.27722.2,blat.proc3825178.chain_835	2	STRG.27722.1,blat.proc3825178.chain_834	2
scaffold_24	spliced_intron	3655919	3656169	+	asmbl_32151,asmbl_32152	none	STRG.26550.5,blat.proc3825176.chain_3466,blat.proc3825176.chain_3467	3	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3
scaffold_2	ends_in_intron	7781989	7781989	+	asmbl_24578	none	blat.proc3825164.chain_2234	1	STRG.2075.1,STRG.2075.2,STRG.2075.3,STRG.2075.4,STRG.2075.5,blat.proc3825164.chain_2227,blat.proc3825164.chain_2228,blat.proc3825164.chain_2229,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	10
scaffold_20	alt_acceptor	6127896	6127897	-	asmbl_25816	none	STRG.23210.2	1	STRG.23210.1,blat.proc3825160.chain_261	2
scaffold_6	spliced_intron	19075642	19076743	+	asmbl_47869	none	STRG.8575.2,Trinity_GG_21983_c0_g1_i4,blat.proc3825168.chain_950	3	STRG.8575.1,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i5,Trinity_GG_21983_c0_g1_i6,blat.proc3825168.chain_948,blat.proc3825168.chain_949,blat.proc3825168.chain_951	7
scaffold_20	retained_exon	6134055	6134081	-	asmbl_25818	none	STRG.23214.1,blat.proc3825160.chain_247	2	STRG.23214.2,blat.proc3825160.chain_248	2
scaffold_8	alternate_exon	8187711	8187882	-	asmbl_51946	none	blat.proc3825152.chain_2378	1	blat.proc3825152.chain_2379	1
scaffold_6	alternate_exon	17646697	17646892	-	asmbl_49193	none	STRG.8458.3,Trinity_GG_4817_c0_g1_i1,blat.proc3825152.chain_885	3	STRG.8458.1	1
scaffold_6	spliced_intron	4320004	4320281	+	asmbl_46878,asmbl_46881	none	STRG.7409.3,blat.proc3825166.chain_3613	2	STRG.7409.1,Trinity_GG_21371_c0_g1_i7,blat.proc3825166.chain_3611,blat.proc3825166.chain_3612,blat.proc3825166.chain_3615	5
scaffold_9	alt_acceptor	18390499	18390500	+	asmbl_54664,asmbl_54665	none	STRG.11879.1,blat.proc3825170.chain_644	2	STRG.11879.3	1
scaffold_21	spliced_intron	2497047	2497201	+	asmbl_28395,asmbl_28398	none	STRG.23878.1,Trinity_GG_30537_c0_g1_i2,blat.proc3825176.chain_1081,blat.proc3825176.chain_1082	4	STRG.23878.2,Trinity_GG_30537_c0_g1_i3,Trinity_GG_30537_c0_g1_i4,blat.proc3825176.chain_1079,blat.proc3825176.chain_1080	5
scaffold_9	alternate_exon	6988388	6992588	+	asmbl_54117	none	STRG.11214.1,blat.proc3825168.chain_3695,blat.proc3825168.chain_3696	3	STRG.11214.3,blat.proc3825168.chain_3698	2
scaffold_21	ends_in_intron	6392769	6392769	+	asmbl_28631	none	STRG.24166.2,Trinity_GG_30650_c4_g1_i1,blat.proc3825176.chain_1285	3	blat.proc3825176.chain_1279,blat.proc3825176.chain_1280	2
scaffold_15	retained_intron	4117365	4117553	-	asmbl_14122	none	STRG.18155.3,Trinity_GG_10180_c0_g1_i1,blat.proc3825156.chain_2940	3	STRG.18155.1,STRG.18155.2,STRG.18155.4,blat.proc3825156.chain_2938,blat.proc3825156.chain_2939	5
scaffold_6	alt_donor	1752113	1752114	-	asmbl_48118,asmbl_48119	none	STRG.7232.6,blat.proc3825150.chain_3311,blat.proc3825150.chain_3314	3	STRG.7232.1,STRG.7232.3,STRG.7232.4,STRG.7232.5,STRG.7232.7,blat.proc3825150.chain_3308,blat.proc3825150.chain_3309,blat.proc3825150.chain_3312,blat.proc3825150.chain_3315	9
scaffold_2	alt_donor	1594909	1594910	+	asmbl_24211,asmbl_24212,asmbl_24213	none	STRG.1627.1,STRG.1627.3,STRG.1627.4,blat.proc3825164.chain_1823	4	STRG.1627.2	1
scaffold_18	spliced_intron	7943320	7944087	-	asmbl_19988	none	STRG.21493.2	1	Trinity_GG_12022_c0_g1_i2,blat.proc3825158.chain_2408	2
scaffold_25	alternate_exon	7939056	7940539	+	asmbl_33700	none	STRG.27623.1,Trinity_GG_32523_c0_g1_i1,blat.proc3825178.chain_688	3	STRG.27623.2	1
scaffold_20	retained_intron	12075926	12076083	-	asmbl_26216	none	blat.proc3825160.chain_685	1	STRG.23706.1,Trinity_GG_13163_c0_g1_i1,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_688,blat.proc3825160.chain_689	6
scaffold_4	retained_intron	13076300	13076428	+	asmbl_41777	none	blat.proc3825166.chain_1380	1	STRG.4947.3,blat.proc3825166.chain_1381	2
scaffold_13	skipped_exon	7504347	7506710	-	asmbl_9892	none	blat.proc3825156.chain_904	1	STRG.16047.1,STRG.16047.3,blat.proc3825156.chain_899,blat.proc3825156.chain_900,blat.proc3825156.chain_903,blat.proc3825156.chain_905,blat.proc3825156.chain_906,blat.proc3825156.chain_909	8
scaffold_15	alt_acceptor	1588727	1588728	+	asmbl_15020	none	STRG.17965.1,blat.proc3825172.chain_2686	2	STRG.17965.2,blat.proc3825172.chain_2685	2
scaffold_24	alt_acceptor	879841	879842	+	asmbl_32055	none	STRG.26371.2	1	STRG.26371.3	1
scaffold_1	ends_in_intron	6343007	6343007	+	asmbl_1834	none	blat.proc3825164.chain_585	1	STRG.435.1,STRG.435.2,blat.proc3825164.chain_583	3
scaffold_8	spliced_intron	6307610	6307748	+	asmbl_52959,asmbl_52961	none	STRG.10033.1,blat.proc3825168.chain_2625,blat.proc3825168.chain_2626	3	blat.proc3825168.chain_2629	1
scaffold_23	alt_donor	7678004	7678005	-	asmbl_31045	none	STRG.26079.2	1	STRG.26079.1	1
scaffold_13	retained_exon	2324402	2324668	+	asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605,asmbl_10610,asmbl_10611	none	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.6,STRG.15564.7	6	blat.proc3825172.chain_232	1
scaffold_20	starts_in_intron	1952624	1952624	-	asmbl_25625	none	STRG.22935.2	1	STRG.22935.1,blat.proc3825160.chain_32	2
scaffold_23	ends_in_intron	3573486	3573486	+	asmbl_31443	none	blat.proc3825176.chain_2651	1	STRG.25778.1,blat.proc3825176.chain_2649,blat.proc3825176.chain_2650,blat.proc3825176.chain_2652	4
scaffold_15	ends_in_intron	8431160	8431160	+	asmbl_15330	none	blat.proc3825172.chain_3057	1	STRG.18399.2	1
scaffold_21	retained_exon	834695	834853	+	asmbl_28309,asmbl_28313	none	STRG.23777.2,blat.proc3825176.chain_910,blat.proc3825176.chain_911	3	STRG.23777.1,blat.proc3825176.chain_909,blat.proc3825176.chain_912	3
scaffold_10	retained_exon	13914936	13915154	+	asmbl_3629	none	STRG.12983.1,blat.proc3825170.chain_1595	2	STRG.12983.2,blat.proc3825170.chain_1596,blat.proc3825170.chain_1597	3
scaffold_9	alternate_exon	12116116	12118449	+	asmbl_54413	none	STRG.11537.3	1	STRG.11537.1,STRG.11537.2,blat.proc3825170.chain_366,blat.proc3825170.chain_367,blat.proc3825170.chain_368,blat.proc3825170.chain_369	6
scaffold_4	alternate_exon	6186058	6186978	-	asmbl_42661,asmbl_42662	none	STRG.4491.1,Trinity_GG_2477_c0_g1_i1,blat.proc3825150.chain_677	3	STRG.4491.3,Trinity_GG_2477_c0_g1_i3,blat.proc3825150.chain_678	3
scaffold_8	alt_acceptor	17815249	17815250	+	asmbl_53510,asmbl_53511	none	STRG.10693.4,blat.proc3825168.chain_3178	2	STRG.10693.1,STRG.10693.2,Trinity_GG_23223_c0_g1_i5,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3182,blat.proc3825168.chain_3183,blat.proc3825168.chain_3184	7
scaffold_12	spliced_intron	4784663	4785218	-	asmbl_8448,asmbl_8456	none	STRG.14660.1,blat.proc3825154.chain_3151,blat.proc3825154.chain_3152	3	Trinity_GG_8171_c0_g1_i15,blat.proc3825154.chain_3146	2
scaffold_2	alt_acceptor	15490689	15490690	+	asmbl_25055,asmbl_25057	none	STRG.2506.3,blat.proc3825164.chain_2794	2	STRG.2506.1,STRG.2506.2,STRG.2506.4,blat.proc3825164.chain_2791,blat.proc3825164.chain_2792,blat.proc3825164.chain_2793	6
scaffold_1	alt_acceptor	2744666	2744667	-	asmbl_125	none	STRG.176.1,blat.proc3825148.chain_183	2	STRG.176.3	1
scaffold_18	starts_in_intron	7243068	7243068	+	asmbl_20731	none	Trinity_GG_29105_c0_g1_i3,blat.proc3825174.chain_2379	2	STRG.21430.1,STRG.21430.2,STRG.21430.3,blat.proc3825174.chain_2380,blat.proc3825174.chain_2381	5
scaffold_1	retained_intron	11269947	11270054	+	asmbl_2093	none	STRG.746.3	1	STRG.746.1,Trinity_GG_17778_c0_g1_i1,blat.proc3825164.chain_886	3
scaffold_28	alt_acceptor	2616375	2616376	+	asmbl_37384	none	STRG.29436.1	1	STRG.29436.2	1
scaffold_8	starts_in_intron	17814873	17814873	+	asmbl_53511,asmbl_53512,asmbl_53513	none	blat.proc3825168.chain_3178,blat.proc3825168.chain_3181,blat.proc3825168.chain_3182	3	STRG.10693.1,STRG.10693.2,STRG.10693.4,Trinity_GG_23223_c0_g1_i5,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3180,blat.proc3825168.chain_3183,blat.proc3825168.chain_3184	8
scaffold_20	skipped_exon	2391876	2393012	+	asmbl_26485	none	STRG.22976.2	1	STRG.22976.1	1
scaffold_15	retained_intron	15917540	15917607	+	asmbl_15845,asmbl_15847	none	STRG.18976.3,Trinity_GG_27681_c1_g1_i2,blat.proc3825172.chain_3551	3	STRG.18976.1,STRG.18976.2,Trinity_GG_27681_c1_g1_i1,blat.proc3825172.chain_3552	4
scaffold_10	spliced_intron	13300486	13300597	+	asmbl_3591,asmbl_3593	none	STRG.12924.1,blat.proc3825170.chain_1459,blat.proc3825170.chain_1460	3	blat.proc3825170.chain_1458	1
scaffold_24	spliced_intron	9121547	9121613	+	asmbl_32517	none	STRG.26939.2,blat.proc3825178.chain_97	2	blat.proc3825178.chain_98	1
scaffold_3	alt_acceptor	14422686	14422687	+	asmbl_40523	none	Trinity_GG_19450_c0_g1_i5,blat.proc3825166.chain_303	2	STRG.3788.1,STRG.3788.2,STRG.3788.3,Trinity_GG_19450_c0_g1_i1,Trinity_GG_19450_c0_g1_i2,Trinity_GG_19450_c0_g1_i4,Trinity_GG_19450_c0_g2_i1,blat.proc3825166.chain_302,blat.proc3825166.chain_304,blat.proc3825166.chain_305,blat.proc3825166.chain_307	11
scaffold_1	alt_donor	18485990	18485991	-	asmbl_1111,asmbl_1115	none	STRG.1298.5,blat.proc3825148.chain_1320	2	blat.proc3825148.chain_1321	1
scaffold_4	spliced_intron	12571017	12571255	-	asmbl_42930	none	STRG.4898.1,blat.proc3825150.chain_1087	2	blat.proc3825150.chain_1085	1
scaffold_20	retained_exon	8431370	8431467	+	asmbl_26777	none	STRG.23391.1,blat.proc3825176.chain_535	2	STRG.23391.2,blat.proc3825176.chain_537	2
scaffold_27	alternate_exon	4807510	4807619	+	asmbl_36320	none	Trinity_GG_33330_c0_g1_i2,blat.proc3825178.chain_2144	2	blat.proc3825178.chain_2141,blat.proc3825178.chain_2142	2
scaffold_15	starts_in_intron	12394406	12394406	-	asmbl_14573,asmbl_14575	none	STRG.18695.2,blat.proc3825156.chain_3517	2	STRG.18695.3,STRG.18695.4,blat.proc3825156.chain_3518	3
scaffold_27	alt_acceptor	4765455	4765456	-	asmbl_36965	none	STRG.28915.2	1	STRG.28915.1,blat.proc3825162.chain_2094	2
scaffold_16	alt_acceptor	3742284	3742285	-	asmbl_16998	none	STRG.19180.1,blat.proc3825158.chain_326	2	STRG.19180.2	1
scaffold_20	starts_in_intron	4479869	4479869	-	asmbl_25739,asmbl_25742,asmbl_25743	none	blat.proc3825160.chain_167,blat.proc3825160.chain_169,blat.proc3825160.chain_170	3	STRG.23127.1,STRG.23127.4,blat.proc3825160.chain_168	3
scaffold_27	starts_in_intron	6265754	6265754	-	asmbl_37051	none	blat.proc3825162.chain_2246	1	STRG.29018.1,STRG.29018.2,blat.proc3825162.chain_2245	3
scaffold_22	alt_donor	6956786	6956787	-	asmbl_29353	none	STRG.25024.1	1	STRG.25024.2,STRG.25024.3	2
scaffold_3	retained_intron	17364766	17365193	-	asmbl_39550,asmbl_39556	none	blat.proc3825150.chain_175,blat.proc3825150.chain_183	2	STRG.3971.2,blat.proc3825150.chain_184,blat.proc3825150.chain_185	3
scaffold_5	spliced_intron	5047311	5047832	+	asmbl_45329	none	STRG.5958.3,blat.proc3825166.chain_2123	2	STRG.5958.4,Trinity_GG_20544_c0_g1_i5,Trinity_GG_20544_c0_g1_i7,blat.proc3825166.chain_2122,blat.proc3825166.chain_2124	5
scaffold_9	retained_intron	9706825	9707000	+	asmbl_54229	none	STRG.11349.3,Trinity_GG_23640_c1_g1_i12,blat.proc3825170.chain_142	3	STRG.11349.6,blat.proc3825170.chain_139	2
scaffold_21	spliced_intron	7367729	7367814	-	asmbl_27800,asmbl_27801	none	STRG.24259.1,Trinity_GG_13537_c0_g1_i2,blat.proc3825160.chain_1409,blat.proc3825160.chain_1410	4	blat.proc3825160.chain_1407,blat.proc3825160.chain_1408	2
scaffold_10	skipped_exon	4049797	4051046	+	asmbl_3104	none	STRG.12245.2	1	STRG.12245.1,Trinity_GG_24107_c0_g1_i2,Trinity_GG_24107_c0_g1_i3,blat.proc3825170.chain_954,blat.proc3825170.chain_955	5
scaffold_26	skipped_exon	2781259	2782166	+	asmbl_34755	none	STRG.27969.2	1	blat.proc3825178.chain_1016	1
scaffold_7	starts_in_intron	13454354	13454354	+	asmbl_50342	none	Trinity_GG_22562_c0_g1_i2	1	STRG.9445.1,Trinity_GG_22562_c0_g1_i1	2
scaffold_4	ends_in_intron	8989329	8989329	-	asmbl_42802	none	Trinity_GG_2567_c1_g1_i1,blat.proc3825150.chain_819	2	STRG.4718.1,STRG.4718.2,STRG.4718.3,STRG.4718.4,blat.proc3825150.chain_817,blat.proc3825150.chain_818	6
scaffold_27	alt_acceptor	5777118	5777119	-	asmbl_37016	none	STRG.28976.1,blat.proc3825162.chain_2204	2	STRG.28976.2,blat.proc3825162.chain_2205	2
scaffold_6	retained_intron	7170247	7171242	+	asmbl_47050,asmbl_47053,asmbl_47055	none	STRG.7628.2,STRG.7628.4,Trinity_GG_21499_c0_g1_i2,blat.proc3825168.chain_81	4	STRG.7628.3	1
scaffold_8	skipped_exon	9868367	9869282	+	asmbl_53120,asmbl_53121,asmbl_53122,asmbl_53124	none	STRG.10233.6,blat.proc3825168.chain_2816,blat.proc3825168.chain_2819,blat.proc3825168.chain_2821	4	STRG.10233.2,STRG.10233.5,blat.proc3825168.chain_2817,blat.proc3825168.chain_2818,blat.proc3825168.chain_2820	5
scaffold_9	alt_donor	12064506	12064507	-	asmbl_55350	none	STRG.11529.3	1	STRG.11529.2,blat.proc3825152.chain_3728	2
scaffold_2	retained_exon	7864425	7864751	-	asmbl_23287	none	STRG.2081.1,blat.proc3825148.chain_2097	2	STRG.2081.2,blat.proc3825148.chain_2098	2
scaffold_16	ends_in_intron	294970	294970	-	asmbl_16846	none	STRG.19020.3,Trinity_GG_10682_c0_g1_i1,blat.proc3825158.chain_141	3	STRG.19020.1,blat.proc3825158.chain_142	2
scaffold_24	retained_exon	2980353	2980510	-	asmbl_32811	none	STRG.26508.1,blat.proc3825160.chain_3573	2	STRG.26508.2,blat.proc3825160.chain_3574	2
scaffold_10	starts_in_intron	14624051	14624051	-	asmbl_4952	none	STRG.13006.1	1	STRG.13006.2	1
scaffold_9	ends_in_intron	11427325	11427325	-	asmbl_55284	none	Trinity_GG_6333_c1_g1_i1,blat.proc3825152.chain_3699	2	STRG.11463.1,blat.proc3825152.chain_3698	2
scaffold_4	spliced_intron	8097999	8098087	-	asmbl_42748	none	STRG.4626.1	1	Trinity_GG_2587_c0_g1_i2	1
scaffold_13	starts_in_intron	11581541	11581541	+	asmbl_11283	none	blat.proc3825172.chain_1014	1	STRG.16314.1,blat.proc3825172.chain_1011,blat.proc3825172.chain_1012,blat.proc3825172.chain_1013	4
scaffold_18	alternate_exon	205251	205340	+	asmbl_20274,asmbl_20275	none	Trinity_GG_28858_c0_g1_i1,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1919,blat.proc3825174.chain_1923	4	STRG.20974.1,STRG.20974.3,blat.proc3825174.chain_1917,blat.proc3825174.chain_1920	4
scaffold_21	ends_in_intron	7485896	7485896	-	asmbl_27824	none	blat.proc3825160.chain_1430	1	STRG.24279.1,STRG.24279.2,blat.proc3825160.chain_1431	3
scaffold_1	alt_acceptor	12683636	12683637	+	asmbl_2245	none	STRG.892.1,blat.proc3825164.chain_1038	2	STRG.892.2	1
scaffold_8	spliced_intron	16040457	16040586	-	asmbl_52351	none	STRG.10585.1,blat.proc3825152.chain_2823	2	STRG.10585.3	1
scaffold_27	starts_in_intron	2767541	2767541	-	asmbl_36852	none	blat.proc3825162.chain_2005	1	STRG.28758.1,blat.proc3825162.chain_2004,blat.proc3825162.chain_2006,blat.proc3825162.chain_2007	4
scaffold_5	skipped_exon	17192140	17194833	+	asmbl_46143	none	STRG.6891.1	1	STRG.6891.2	1
scaffold_19	alt_acceptor	13372924	13372925	+	asmbl_21874	none	STRG.22657.1,Trinity_GG_29796_c0_g1_i2,blat.proc3825174.chain_3600	3	STRG.22657.2,STRG.22657.3	2
scaffold_10	starts_in_intron	10572085	10572085	+	asmbl_3424	none	STRG.12751.2,Trinity_GG_24284_c0_g1_i2	2	STRG.12751.1,Trinity_GG_24284_c0_g1_i6	2
scaffold_9	spliced_intron	6290195	6290500	+	asmbl_54087	none	STRG.11166.1,blat.proc3825168.chain_3666	2	STRG.11166.2,blat.proc3825168.chain_3665	2
scaffold_2	ends_in_intron	16413787	16413787	-	asmbl_23694	none	STRG.2587.3	1	STRG.2587.1,STRG.2587.2,blat.proc3825148.chain_2556,blat.proc3825148.chain_2557,blat.proc3825148.chain_2558,blat.proc3825148.chain_2559	6
scaffold_1	retained_intron	11627447	11627548	-	asmbl_646,asmbl_647	none	Trinity_GG_386_c0_g1_i1,Trinity_GG_386_c0_g1_i7,blat.proc3825148.chain_719,blat.proc3825148.chain_721	4	STRG.769.1,blat.proc3825148.chain_722,blat.proc3825148.chain_723	3
scaffold_17	alternate_exon	13958580	13958731	+	asmbl_19368,asmbl_19369,asmbl_19372	none	STRG.20882.1,STRG.20882.2,blat.proc3825174.chain_1773,blat.proc3825174.chain_1774,blat.proc3825174.chain_1775	5	blat.proc3825174.chain_1771	1
scaffold_2	spliced_intron	5392157	5392284	-	asmbl_23147,asmbl_23149	none	STRG.1948.1,blat.proc3825148.chain_1875,blat.proc3825148.chain_1877	3	blat.proc3825148.chain_1876	1
scaffold_17	alt_donor	13844775	13844776	-	asmbl_18380	none	STRG.20860.1,blat.proc3825158.chain_1779	2	STRG.20860.3	1
scaffold_20	starts_in_intron	1754551	1754551	+	asmbl_26453	none	blat.proc3825176.chain_124	1	STRG.22921.1,STRG.22921.2,STRG.22921.3,Trinity_GG_29951_c0_g1_i3,blat.proc3825176.chain_122,blat.proc3825176.chain_125	6
scaffold_2	ends_in_intron	13962650	13962650	-	asmbl_23551	none	Trinity_GG_1325_c1_g1_i1,blat.proc3825148.chain_2382	2	STRG.2386.1,STRG.2386.2,blat.proc3825148.chain_2380,blat.proc3825148.chain_2381	4
scaffold_1	ends_in_intron	7802891	7802891	-	asmbl_442	none	Trinity_GG_268_c0_g1_i2,blat.proc3825148.chain_489	2	STRG.543.1,STRG.543.2,blat.proc3825148.chain_488	3
scaffold_11	alt_acceptor	8024109	8024110	+	asmbl_5706	none	STRG.13807.1,Trinity_GG_24919_c0_g1_i1,blat.proc3825170.chain_2355	3	STRG.13807.2	1
scaffold_16	ends_in_intron	14707046	14707046	+	asmbl_16709	none	blat.proc3825174.chain_708	1	STRG.19869.1,blat.proc3825174.chain_709	2
scaffold_2	alt_donor	7880804	7880805	+	asmbl_24581,asmbl_24586,asmbl_24587	none	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291,blat.proc3825164.chain_2292	7	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2
scaffold_13	spliced_intron	6628218	6628496	-	asmbl_9810	none	STRG.15960.1,Trinity_GG_8986_c0_g1_i1,blat.proc3825156.chain_869	3	Trinity_GG_8986_c0_g1_i3,blat.proc3825156.chain_868	2
scaffold_2	skipped_exon	14193588	14193798	-	asmbl_23568	none	STRG.2416.3	1	blat.proc3825148.chain_2413,blat.proc3825148.chain_2414	2
scaffold_19	spliced_intron	12432771	12432955	+	asmbl_21799,asmbl_21802	none	STRG.22571.1,blat.proc3825174.chain_3594,blat.proc3825174.chain_3597	3	blat.proc3825174.chain_3596,blat.proc3825174.chain_3598	2
scaffold_17	retained_intron	4267792	4267908	+	asmbl_18779	none	Trinity_GG_28385_c0_g2_i1,blat.proc3825174.chain_1079	2	STRG.20175.1,blat.proc3825174.chain_1078	2
scaffold_16	alt_acceptor	13214170	13214171	+	asmbl_16651,asmbl_16652	none	STRG.19781.1,STRG.19781.2,blat.proc3825174.chain_693,blat.proc3825174.chain_695	4	STRG.19781.3	1
scaffold_7	starts_in_intron	12083166	12083166	+	asmbl_50219	none	Trinity_GG_22485_c1_g1_i1,blat.proc3825168.chain_1846	2	STRG.9316.1,STRG.9316.2,STRG.9316.3,STRG.9316.4,blat.proc3825168.chain_1845	5
scaffold_17	alternate_exon	1290652	1290765	-	asmbl_17685	none	STRG.19964.2	1	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_972,blat.proc3825158.chain_973,blat.proc3825158.chain_975,blat.proc3825158.chain_976	7
scaffold_8	retained_exon	7306416	7306517	-	asmbl_51896	none	STRG.10061.1,blat.proc3825152.chain_2327	2	STRG.10061.2,blat.proc3825152.chain_2326	2
scaffold_3	retained_intron	17457148	17457253	+	asmbl_40680,asmbl_40684	none	STRG.3978.4,Trinity_GG_19520_c0_g1_i1,blat.proc3825166.chain_435	3	STRG.3978.1,STRG.3978.2,STRG.3978.3,STRG.3978.5,Trinity_GG_19520_c0_g1_i2,blat.proc3825166.chain_436	6
scaffold_20	alternate_exon	11183247	11184157	-	asmbl_26150	none	STRG.23631.1,blat.proc3825160.chain_717	2	STRG.23631.2,blat.proc3825160.chain_716	2
scaffold_22	alternate_exon	4577470	4577657	+	asmbl_30031	none	blat.proc3825176.chain_2003	1	STRG.24887.1	1
scaffold_23	alt_acceptor	10826235	10826236	-	asmbl_31165	none	STRG.26273.2	1	STRG.26273.1,blat.proc3825160.chain_3407	2
scaffold_13	retained_intron	9608243	9608361	+	asmbl_11213	none	blat.proc3825172.chain_1041	1	STRG.16227.1,STRG.16227.2,blat.proc3825172.chain_1038,blat.proc3825172.chain_1039,blat.proc3825172.chain_1042	5
scaffold_21	alternate_exon	5774120	5774359	-	asmbl_27698	none	blat.proc3825160.chain_1204	1	STRG.24114.1,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200	4
scaffold_9	retained_intron	13279621	13279904	+	asmbl_54493	none	blat.proc3825170.chain_416	1	STRG.11625.1,STRG.11625.2,blat.proc3825170.chain_417,blat.proc3825170.chain_418	4
scaffold_5	spliced_intron	12660558	12661236	+	asmbl_45807,asmbl_45812,asmbl_45814	none	STRG.6505.1,STRG.6505.2,STRG.6505.4,blat.proc3825166.chain_2637	4	STRG.6505.3,blat.proc3825166.chain_2636,blat.proc3825166.chain_2638,blat.proc3825166.chain_2639	4
scaffold_13	spliced_intron	9254392	9254501	+	asmbl_11186	none	STRG.16187.1,blat.proc3825172.chain_879	2	blat.proc3825172.chain_880	1
scaffold_22	alternate_exon	6123382	6127862	+	asmbl_30097,asmbl_30102	none	STRG.24968.1,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2128,blat.proc3825176.chain_2132	4	STRG.24968.7	1
scaffold_23	alternate_exon	4101046	4104950	-	asmbl_30832	none	STRG.25826.1	1	STRG.25826.3,blat.proc3825160.chain_3032	2
scaffold_9	ends_in_intron	17743019	17743019	+	asmbl_54646	none	blat.proc3825170.chain_568	1	STRG.11863.1,STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_563,blat.proc3825170.chain_564,blat.proc3825170.chain_565,blat.proc3825170.chain_566,blat.proc3825170.chain_567	8
scaffold_20	ends_in_intron	5482439	5482439	-	asmbl_25764	none	blat.proc3825160.chain_255	1	STRG.23173.1,blat.proc3825160.chain_254	2
scaffold_28	alt_acceptor	7254677	7254678	+	asmbl_37658,asmbl_37659	none	STRG.29793.3,STRG.29793.4	2	STRG.29793.1,STRG.29793.2,Trinity_GG_33812_c0_g1_i1,Trinity_GG_33812_c0_g1_i2,blat.proc3825178.chain_2945,blat.proc3825178.chain_2947	6
scaffold_13	spliced_intron	14174926	14175940	+	asmbl_11435	none	Trinity_GG_26388_c0_g1_i2,blat.proc3825172.chain_1270	2	STRG.16460.4,Trinity_GG_26388_c0_g1_i1,Trinity_GG_26388_c0_g1_i6,Trinity_GG_26388_c0_g1_i8,Trinity_GG_26388_c0_g1_i9,blat.proc3825172.chain_1264,blat.proc3825172.chain_1265,blat.proc3825172.chain_1267,blat.proc3825172.chain_1268	9
scaffold_23	spliced_intron	6290838	6290991	-	asmbl_30968,asmbl_30971,asmbl_30973	none	STRG.25975.1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192	6	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190	7
scaffold_20	alternate_exon	6655851	6656024	-	asmbl_25847	none	Trinity_GG_12978_c1_g1_i2,blat.proc3825160.chain_353	2	blat.proc3825160.chain_352	1
scaffold_13	retained_exon	15672427	15672466	+	asmbl_11526	none	STRG.16612.3	1	STRG.16612.5,STRG.16612.6	2
scaffold_2	starts_in_intron	15768430	15768430	-	asmbl_23657	none	Trinity_GG_1377_c0_g1_i1	1	STRG.2528.1	1
scaffold_5	starts_in_intron	9583736	9583736	-	asmbl_44292	none	blat.proc3825150.chain_2481	1	STRG.6280.1,blat.proc3825150.chain_2480	2
scaffold_25	retained_intron	3820300	3820402	-	asmbl_34160	none	Trinity_GG_15320_c0_g1_i1,blat.proc3825162.chain_700	2	STRG.27339.1,STRG.27339.2,Trinity_GG_15320_c0_g1_i2,blat.proc3825162.chain_701	4
scaffold_14	alternate_exon	13600285	13600566	+	asmbl_12485,asmbl_12488	none	STRG.17648.2,blat.proc3825172.chain_2301	2	STRG.17648.1,blat.proc3825172.chain_2302	2
scaffold_18	spliced_intron	9787536	9787656	-	asmbl_20085,asmbl_20086,asmbl_20087	none	STRG.21584.1,STRG.21584.2,blat.proc3825158.chain_2496	3	Trinity_GG_12062_c0_g1_i2,blat.proc3825158.chain_2495	2
scaffold_2	alt_acceptor	13995432	13995433	+	asmbl_24863	none	STRG.2397.2	1	STRG.2397.1,STRG.2397.3	2
scaffold_4	retained_intron	4102190	4102272	+	asmbl_41231	none	blat.proc3825166.chain_696	1	STRG.4316.1,STRG.4316.2	2
scaffold_6	spliced_intron	3055244	3055748	+	asmbl_46801,asmbl_46805	none	STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3522	3	STRG.7319.2,blat.proc3825166.chain_3521,blat.proc3825166.chain_3524	3
scaffold_25	skipped_exon	4575779	4576670	+	asmbl_33519,asmbl_33523	none	STRG.27395.3,Trinity_GG_32430_c0_g1_i4,Trinity_GG_32430_c0_g1_i6,blat.proc3825178.chain_529,blat.proc3825178.chain_531	5	STRG.27395.1,STRG.27395.2,Trinity_GG_32430_c0_g1_i1,Trinity_GG_32430_c0_g1_i9,blat.proc3825178.chain_528,blat.proc3825178.chain_532	6
scaffold_3	retained_exon	1758480	1758557	+	asmbl_39872,asmbl_39874,asmbl_39875	none	STRG.2993.1,blat.proc3825164.chain_3236,blat.proc3825164.chain_3237,blat.proc3825164.chain_3238,blat.proc3825164.chain_3240	5	blat.proc3825164.chain_3239	1
scaffold_14	retained_intron	8694420	8694707	-	asmbl_13339,asmbl_13341	none	STRG.17305.2,blat.proc3825156.chain_2145	2	STRG.17305.1,blat.proc3825156.chain_2143,blat.proc3825156.chain_2144,blat.proc3825156.chain_2146	4
scaffold_6	alternate_exon	2681910	2681944	-	asmbl_48145	none	STRG.7261.2	1	STRG.7261.1,blat.proc3825150.chain_3375	2
scaffold_11	retained_intron	10981968	10982289	-	asmbl_7008	none	STRG.14062.1,Trinity_GG_7857_c0_g1_i1,blat.proc3825154.chain_2608	3	STRG.14062.2	1
scaffold_4	retained_intron	16311395	16311679	-	asmbl_43152	none	blat.proc3825150.chain_1334	1	STRG.5199.1,blat.proc3825150.chain_1332,blat.proc3825150.chain_1333	3
scaffold_3	starts_in_intron	3247884	3247884	+	asmbl_39945,asmbl_39947	none	blat.proc3825164.chain_3380,blat.proc3825164.chain_3395	2	STRG.3072.2,STRG.3072.4,STRG.3072.5	3
scaffold_14	alternate_exon	6909278	6909702	+	asmbl_12112,asmbl_12113	none	STRG.17131.1,STRG.17131.2,blat.proc3825172.chain_1908,blat.proc3825172.chain_1909	4	blat.proc3825172.chain_1910	1
scaffold_6	retained_exon	2880868	2881305	-	asmbl_48181	none	STRG.7287.1,blat.proc3825150.chain_3405	2	STRG.7287.3,blat.proc3825150.chain_3406	2
scaffold_10	ends_in_intron	10308231	10308231	-	asmbl_4723	none	blat.proc3825154.chain_1312	1	STRG.12722.1,blat.proc3825154.chain_1313	2
scaffold_14	alt_acceptor	7966006	7966007	-	asmbl_13234	none	STRG.17212.1,Trinity_GG_9661_c1_g1_i1,blat.proc3825156.chain_2039	3	STRG.17212.2,Trinity_GG_9661_c1_g1_i2,blat.proc3825156.chain_2038	3
scaffold_10	alt_donor	1292164	1292165	+	asmbl_2923	none	STRG.12028.1,blat.proc3825170.chain_725	2	STRG.12028.3,Trinity_GG_23971_c0_g2_i1,blat.proc3825170.chain_724	3
scaffold_10	alt_acceptor	9004205	9004206	+	asmbl_3352	none	STRG.12646.1	1	STRG.12646.2,STRG.12646.3,STRG.12646.4,blat.proc3825170.chain_1216	4
scaffold_1	retained_intron	16722860	16722887	+	asmbl_2499	none	STRG.1175.2	1	STRG.1175.1	1
scaffold_10	alternate_exon	5548807	5549932	+	asmbl_3185	none	STRG.12375.1,blat.proc3825170.chain_1021	2	STRG.12375.2,blat.proc3825170.chain_1022	2
scaffold_14	skipped_exon	9272764	9273885	-	asmbl_13363	none	STRG.17338.4	1	STRG.17338.1,STRG.17338.2,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204	6
scaffold_18	skipped_exon	4848613	4849494	+	asmbl_20568	none	STRG.21278.3,Trinity_GG_28997_c0_g1_i5,blat.proc3825174.chain_2169	3	STRG.21278.1,Trinity_GG_28997_c0_g1_i4,blat.proc3825174.chain_2170	3
scaffold_27	retained_intron	931032	931338	-	asmbl_36718,asmbl_36719,asmbl_36721	none	STRG.28588.1,STRG.28588.2,STRG.28588.4,blat.proc3825162.chain_1833,blat.proc3825162.chain_1834,blat.proc3825162.chain_1836	6	STRG.28588.3,blat.proc3825162.chain_1835	2
scaffold_3	alt_donor	7714416	7714417	-	asmbl_38977,asmbl_38978,asmbl_38979,asmbl_38980,asmbl_38984	none	blat.proc3825148.chain_3197,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3200,blat.proc3825148.chain_3204	5	blat.proc3825148.chain_3201,blat.proc3825148.chain_3202,blat.proc3825148.chain_3203	3
scaffold_1	spliced_intron	17975385	17975557	-	asmbl_1073	none	STRG.1265.2	1	STRG.1265.1,Trinity_GG_619_c0_g1_i1	2
scaffold_7	alternate_exon	17990672	17990844	+	asmbl_50507	none	STRG.9639.2,blat.proc3825168.chain_2164	2	STRG.9639.3	1
scaffold_9	starts_in_intron	9413930	9413930	-	asmbl_55170	none	blat.proc3825152.chain_3561	1	STRG.11303.1,blat.proc3825152.chain_3560,blat.proc3825152.chain_3562	3
scaffold_2	starts_in_intron	7878269	7878269	+	asmbl_24581	none	Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2291	2	Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2289,blat.proc3825164.chain_2290,blat.proc3825164.chain_2292	6
scaffold_8	ends_in_intron	6119641	6119641	+	asmbl_52941	none	blat.proc3825168.chain_2544	1	STRG.10015.1,STRG.10015.2,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	4
scaffold_12	retained_intron	7626482	7626549	-	asmbl_8610	none	STRG.14843.1,Trinity_GG_8248_c0_g1_i2,blat.proc3825154.chain_3290	3	STRG.14843.2	1
scaffold_2	retained_intron	892404	892512	+	asmbl_24136,asmbl_24137,asmbl_24143	none	STRG.1566.1,STRG.1566.3,blat.proc3825164.chain_1727,blat.proc3825164.chain_1729,blat.proc3825164.chain_1730	5	STRG.1566.2,STRG.1566.4,STRG.1566.5,blat.proc3825164.chain_1726,blat.proc3825164.chain_1731	5
scaffold_11	alt_donor	5139850	5139851	+	asmbl_5544	none	STRG.13601.1,Trinity_GG_24752_c0_g1_i2,blat.proc3825170.chain_2070	3	STRG.13601.2,Trinity_GG_24752_c0_g1_i1,blat.proc3825170.chain_2071	3
scaffold_16	alternate_exon	11337137	11337885	+	asmbl_16577	none	STRG.19664.1,blat.proc3825174.chain_606	2	STRG.19664.2	1
scaffold_19	alt_acceptor	6740773	6740774	+	asmbl_21438	none	STRG.22187.1	1	STRG.22187.2,Trinity_GG_29563_c0_g1_i1	2
scaffold_17	spliced_intron	4267792	4267908	+	asmbl_18776	none	STRG.20175.1,blat.proc3825174.chain_1078	2	Trinity_GG_28385_c0_g2_i1,blat.proc3825174.chain_1079	2
scaffold_12	alt_acceptor	16403809	16403810	+	asmbl_8170,asmbl_8172,asmbl_8174	none	STRG.15402.4,STRG.15402.5,STRG.15402.6,blat.proc3825172.chain_46	4	STRG.15402.2,STRG.15402.3,Trinity_GG_25733_c0_g1_i7,blat.proc3825172.chain_45	4
scaffold_2	alt_donor	14276385	14276386	+	asmbl_24898,asmbl_24900,asmbl_24904,asmbl_24905	none	STRG.2428.3,blat.proc3825164.chain_2594,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596	4	STRG.2428.2	1
scaffold_9	retained_exon	14315898	14315991	-	asmbl_55478	none	STRG.11680.1	1	STRG.11680.2	1
scaffold_21	spliced_intron	2654905	2655051	-	asmbl_27483,asmbl_27485,asmbl_27486,asmbl_27488,asmbl_27489	none	STRG.23906.1,STRG.23906.2,Trinity_GG_13292_c0_g1_i2,Trinity_GG_13292_c0_g1_i3,blat.proc3825160.chain_976,blat.proc3825160.chain_977,blat.proc3825160.chain_981,blat.proc3825160.chain_982,blat.proc3825160.chain_983	9	STRG.23906.3,Trinity_GG_13292_c0_g1_i8,blat.proc3825160.chain_980	3
scaffold_21	retained_exon	256174	256535	-	asmbl_27292,asmbl_27293	none	blat.proc3825160.chain_808,blat.proc3825160.chain_810	2	blat.proc3825160.chain_807	1
scaffold_4	alternate_exon	3260040	3265000	-	asmbl_42434	none	blat.proc3825150.chain_514	1	Trinity_GG_2388_c1_g1_i3,blat.proc3825150.chain_516	2
scaffold_3	alt_donor	17834027	17834028	+	asmbl_40701	none	blat.proc3825166.chain_503	1	STRG.3996.1,STRG.3996.2,blat.proc3825166.chain_502,blat.proc3825166.chain_505	4
scaffold_19	starts_in_intron	8150286	8150286	+	asmbl_21496	none	STRG.22267.2,blat.proc3825174.chain_3248	2	STRG.22267.1,blat.proc3825174.chain_3249	2
scaffold_5	alt_acceptor	18989363	18989364	+	asmbl_46299	none	STRG.7015.1,Trinity_GG_21162_c0_g1_i1,blat.proc3825166.chain_3218	3	STRG.7015.2	1
scaffold_10	retained_exon	6674432	6674521	-	asmbl_4488	none	blat.proc3825154.chain_1064	1	blat.proc3825154.chain_1063	1
scaffold_1	alternate_exon	9174122	9174142	-	asmbl_522	none	STRG.608.1	1	STRG.608.2	1
scaffold_23	ends_in_intron	5015114	5015114	-	asmbl_30878	none	blat.proc3825160.chain_3063	1	STRG.25885.1,blat.proc3825160.chain_3061	2
scaffold_10	spliced_intron	207548	207639	-	asmbl_3921,asmbl_3924,asmbl_3925	none	STRG.11913.1,STRG.11913.2,blat.proc3825154.chain_430,blat.proc3825154.chain_432	4	blat.proc3825154.chain_431	1
scaffold_5	alt_acceptor	5738074	5738075	+	asmbl_45363,asmbl_45364,asmbl_45365	none	STRG.5992.2,STRG.5992.5,STRG.5992.6,blat.proc3825166.chain_2134	4	STRG.5992.1,STRG.5992.4,blat.proc3825166.chain_2131,blat.proc3825166.chain_2135	4
scaffold_15	spliced_intron	9818455	9818660	+	asmbl_15417,asmbl_15418	none	STRG.18497.1,STRG.18497.2,blat.proc3825172.chain_3081,blat.proc3825172.chain_3082	4	STRG.18497.3,Trinity_GG_27412_c0_g1_i2,blat.proc3825172.chain_3080,blat.proc3825172.chain_3084	4
scaffold_13	starts_in_intron	14863209	14863209	-	asmbl_10209	none	Trinity_GG_9251_c0_g1_i4	1	STRG.16531.2	1
scaffold_1	starts_in_intron	9121559	9121559	+	asmbl_1955	none	Trinity_GG_17704_c0_g1_i3,blat.proc3825164.chain_763	2	STRG.605.1	1
scaffold_26	alt_donor	3082042	3082043	+	asmbl_34765	none	STRG.28002.2	1	STRG.28002.1,blat.proc3825178.chain_1034,blat.proc3825178.chain_1035	3
scaffold_16	alt_donor	4149505	4149506	+	asmbl_16177	none	STRG.19230.1,Trinity_GG_27835_c0_g1_i1,blat.proc3825174.chain_113	3	STRG.19230.2,STRG.19230.3	2
scaffold_14	spliced_intron	151364	151904	-	asmbl_12778,asmbl_12780	none	STRG.16711.2,STRG.16711.3,blat.proc3825156.chain_1521	3	STRG.16711.4,blat.proc3825156.chain_1519,blat.proc3825156.chain_1520	3
scaffold_27	spliced_intron	9917345	9917430	+	asmbl_36543	none	blat.proc3825178.chain_2444	1	Trinity_GG_33521_c1_g1_i6,blat.proc3825178.chain_2446	2
scaffold_19	starts_in_intron	11270040	11270040	+	asmbl_21687	none	STRG.22459.2,blat.proc3825174.chain_3473	2	STRG.22459.1,blat.proc3825174.chain_3472	2
scaffold_19	retained_intron	12436516	12436685	+	asmbl_21804	none	blat.proc3825174.chain_3595	1	STRG.22571.1,blat.proc3825174.chain_3594,blat.proc3825174.chain_3596,blat.proc3825174.chain_3597,blat.proc3825174.chain_3598	5
scaffold_1	retained_intron	14191116	14191205	-	asmbl_871	none	blat.proc3825148.chain_968	1	STRG.1005.1,blat.proc3825148.chain_969,blat.proc3825148.chain_971	3
scaffold_10	spliced_intron	13304334	13304549	+	asmbl_3591,asmbl_3592,asmbl_3593	none	STRG.12924.1,blat.proc3825170.chain_1458,blat.proc3825170.chain_1459,blat.proc3825170.chain_1460	4	blat.proc3825170.chain_1461	1
scaffold_10	alt_acceptor	17117714	17117715	+	asmbl_3742	none	STRG.13156.1,blat.proc3825170.chain_1736	2	STRG.13156.3	1
scaffold_2	skipped_exon	7880738	7881679	+	asmbl_24588	none	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291,blat.proc3825164.chain_2292	7
scaffold_20	ends_in_intron	1095421	1095421	-	asmbl_25532	none	Trinity_GG_12699_c1_g1_i1,blat.proc3825158.chain_3619	2	STRG.22817.1,Trinity_GG_12699_c0_g1_i2,blat.proc3825158.chain_3617,blat.proc3825158.chain_3618	4
scaffold_4	alt_acceptor	13607677	13607678	+	asmbl_41807	none	STRG.4987.2	1	STRG.4987.1,Trinity_GG_20084_c0_g1_i1,blat.proc3825166.chain_1393	3
scaffold_13	spliced_intron	8112220	8112754	+	asmbl_11104	none	STRG.16091.1,Trinity_GG_26097_c0_g2_i1	2	STRG.16091.2,Trinity_GG_26097_c0_g1_i1,blat.proc3825172.chain_742	3
scaffold_22	spliced_intron	4239789	4240805	-	asmbl_29213	none	STRG.24845.3	1	blat.proc3825160.chain_2066	1
scaffold_9	starts_in_intron	8089145	8089145	-	asmbl_55120	none	blat.proc3825152.chain_3463	1	STRG.11241.1,blat.proc3825152.chain_3464	2
scaffold_12	alternate_exon	4723970	4724663	-	asmbl_8436	none	STRG.14649.2	1	STRG.14649.5,blat.proc3825154.chain_3100,blat.proc3825154.chain_3101	3
scaffold_9	ends_in_intron	9702511	9702511	+	asmbl_54234	none	blat.proc3825170.chain_138	1	STRG.11349.1,STRG.11349.2,STRG.11349.3,STRG.11349.4,blat.proc3825170.chain_139,blat.proc3825170.chain_143,blat.proc3825170.chain_144	7
scaffold_6	spliced_intron	11456049	11456165	-	asmbl_48753	none	STRG.7935.2,blat.proc3825152.chain_345	2	STRG.7935.1,blat.proc3825152.chain_346	2
scaffold_7	alt_donor	8860418	8860419	+	asmbl_50068	none	STRG.9128.2	1	STRG.9128.1,blat.proc3825168.chain_1598	2
scaffold_10	retained_exon	10641909	10642036	-	asmbl_4754	none	STRG.12763.1	1	STRG.12763.2	1
scaffold_11	skipped_exon	9816932	9817297	+	asmbl_5903	none	STRG.13997.2	1	STRG.13997.1,blat.proc3825170.chain_2535	2
scaffold_14	alternate_exon	12766789	12767228	-	asmbl_13601	none	STRG.17591.4,blat.proc3825156.chain_2479	2	STRG.17591.1,blat.proc3825156.chain_2478,blat.proc3825156.chain_2480	3
scaffold_8	retained_intron	8969632	8969801	-	asmbl_51986	none	blat.proc3825152.chain_2424	1	STRG.10148.1,blat.proc3825152.chain_2425	2
scaffold_2	alt_donor	8855625	8855626	+	asmbl_24646	none	STRG.2137.1,Trinity_GG_18519_c0_g1_i1,blat.proc3825164.chain_2322	3	STRG.2137.2,Trinity_GG_18519_c0_g1_i2,blat.proc3825164.chain_2323	3
scaffold_5	starts_in_intron	997120	997120	+	asmbl_45110	none	Trinity_GG_20393_c0_g1_i1,blat.proc3825166.chain_1908	2	STRG.5649.1	1
scaffold_13	spliced_intron	519849	520155	+	asmbl_10484,asmbl_10486,asmbl_10488,asmbl_10490,asmbl_10492	none	STRG.15449.2,STRG.15449.4,STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_184	9	STRG.15449.1,blat.proc3825172.chain_179,blat.proc3825172.chain_186,blat.proc3825172.chain_188	4
scaffold_7	ends_in_intron	3415162	3415162	-	asmbl_50798	none	blat.proc3825152.chain_1250	1	blat.proc3825152.chain_1246	1
scaffold_14	alt_donor	6277328	6277329	-	asmbl_13113,asmbl_13115,asmbl_13118	none	STRG.17077.2,STRG.17077.3,blat.proc3825156.chain_1798,blat.proc3825156.chain_1799	4	STRG.17077.1,STRG.17077.4,blat.proc3825156.chain_1800,blat.proc3825156.chain_1801	4
scaffold_12	alt_acceptor	5659353	5659354	+	asmbl_7667	none	STRG.14721.2	1	STRG.14721.1,blat.proc3825170.chain_3242	2
scaffold_18	alternate_exon	7947974	7948122	-	asmbl_19992	none	STRG.21494.4,blat.proc3825158.chain_2404	2	STRG.21494.1,STRG.21494.2,STRG.21494.3,blat.proc3825158.chain_2402,blat.proc3825158.chain_2403	5
scaffold_7	retained_intron	12387853	12388141	-	asmbl_51206,asmbl_51207,asmbl_51209	none	blat.proc3825152.chain_1655,blat.proc3825152.chain_1657,blat.proc3825152.chain_1660	3	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1661	5
scaffold_7	retained_exon	13575816	13575933	+	asmbl_50364	none	STRG.9460.1,Trinity_GG_22572_c0_g1_i1,blat.proc3825168.chain_1990	3	STRG.9460.2,Trinity_GG_22572_c0_g1_i2,blat.proc3825168.chain_1991	3
scaffold_14	retained_intron	3161864	3162176	+	asmbl_11915,asmbl_11916,asmbl_11922,asmbl_11923,asmbl_11924	none	Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	7	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2
scaffold_3	alternate_exon	6034867	6035682	-	asmbl_38878	none	STRG.3259.5,Trinity_GG_1777_c0_g2_i1,blat.proc3825148.chain_3160	3	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.6,STRG.3259.7	5
scaffold_10	ends_in_intron	13771900	13771900	-	asmbl_4930	none	STRG.12971.2	1	STRG.12971.1,blat.proc3825154.chain_1610,blat.proc3825154.chain_1611	3
scaffold_17	alt_acceptor	9090251	9090252	-	asmbl_18151,asmbl_18152	none	STRG.20538.3,STRG.20538.4	2	STRG.20538.1,STRG.20538.2,blat.proc3825158.chain_1560,blat.proc3825158.chain_1561	4
scaffold_28	starts_in_intron	2652499	2652499	+	asmbl_37397	none	blat.proc3825178.chain_2670	1	STRG.29457.1,STRG.29457.2,blat.proc3825178.chain_2671	3
scaffold_2	starts_in_intron	13093955	13093955	+	asmbl_24822	none	STRG.2335.2,blat.proc3825164.chain_2530	2	STRG.2335.1,blat.proc3825164.chain_2528	2
scaffold_24	starts_in_intron	6897081	6897081	+	asmbl_32358	none	blat.proc3825176.chain_3709	1	STRG.26751.1,blat.proc3825176.chain_3710	2
scaffold_10	starts_in_intron	9684320	9684320	-	asmbl_4701	none	blat.proc3825154.chain_1310	1	STRG.12702.1,blat.proc3825154.chain_1311	2
scaffold_4	starts_in_intron	12606695	12606695	+	asmbl_41733	none	Trinity_GG_19989_c0_g1_i3,blat.proc3825166.chain_1237	2	STRG.4900.1,STRG.4900.2,blat.proc3825166.chain_1236,blat.proc3825166.chain_1238	4
scaffold_22	spliced_intron	8241615	8241803	-	asmbl_29467	none	STRG.25182.2,blat.proc3825160.chain_2327	2	STRG.25182.1,STRG.25182.3,blat.proc3825160.chain_2328	3
scaffold_5	skipped_exon	237071	239063	-	asmbl_43762	none	STRG.5593.2	1	STRG.5593.1,STRG.5593.3,STRG.5593.4,blat.proc3825150.chain_1832	4
scaffold_16	starts_in_intron	8646364	8646364	+	asmbl_16437	none	STRG.19493.3	1	STRG.19493.1,blat.proc3825174.chain_411,blat.proc3825174.chain_415,blat.proc3825174.chain_416	4
scaffold_5	starts_in_intron	14261207	14261207	+	asmbl_45912,asmbl_45919	none	Trinity_GG_20907_c0_g1_i4,blat.proc3825166.chain_2784,blat.proc3825166.chain_2789	3	STRG.6638.1,STRG.6638.2,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2783,blat.proc3825166.chain_2785,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2790	9
scaffold_7	alt_donor	8297093	8297094	-	asmbl_50994,asmbl_50995	none	STRG.9066.1,STRG.9066.4,blat.proc3825152.chain_1454,blat.proc3825152.chain_1457	4	STRG.9066.2,blat.proc3825152.chain_1452	2
scaffold_11	alternate_exon	11999663	11999789	-	asmbl_7057	none	STRG.14126.1,Trinity_GG_7897_c0_g1_i4,blat.proc3825154.chain_2671	3	Trinity_GG_7897_c0_g1_i1,blat.proc3825154.chain_2673	2
scaffold_22	alt_donor	7417490	7417491	-	asmbl_29396,asmbl_29397	none	STRG.25079.2,blat.proc3825160.chain_2234	2	STRG.25079.1,blat.proc3825160.chain_2236	2
scaffold_25	alt_acceptor	6164213	6164214	+	asmbl_33595	none	STRG.27502.1,blat.proc3825178.chain_603	2	STRG.27502.4	1
scaffold_2	alt_donor	20127839	20127840	-	asmbl_23881	none	blat.proc3825164.chain_3026	1	STRG.2840.1	1
scaffold_6	alt_donor	17829917	17829918	+	asmbl_47786,asmbl_47787	none	STRG.8472.2,Trinity_GG_21977_c0_g1_i1,blat.proc3825168.chain_934	3	STRG.8472.1	1
scaffold_15	starts_in_intron	12597923	12597923	-	asmbl_14591	none	blat.proc3825156.chain_3575	1	STRG.18712.1,blat.proc3825156.chain_3573,blat.proc3825156.chain_3577	3
scaffold_13	starts_in_intron	9179773	9179773	-	asmbl_10009	none	blat.proc3825156.chain_1085	1	STRG.16177.1,STRG.16177.2,blat.proc3825156.chain_1083,blat.proc3825156.chain_1084,blat.proc3825156.chain_1086	5
scaffold_11	alt_donor	7049236	7049237	+	asmbl_5649	none	Trinity_GG_24878_c0_g1_i3,blat.proc3825170.chain_2274	2	STRG.13733.1,STRG.13733.4,STRG.13733.5,Trinity_GG_24878_c0_g1_i2,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i6,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2271,blat.proc3825170.chain_2272,blat.proc3825170.chain_2273	11
scaffold_8	retained_intron	16384026	16384136	+	asmbl_53447	none	STRG.10618.2	1	STRG.10618.1,Trinity_GG_23214_c0_g1_i1,blat.proc3825168.chain_3160	3
scaffold_17	alt_acceptor	539183	539184	+	asmbl_18545	none	STRG.19902.2	1	STRG.19902.1,blat.proc3825174.chain_788,blat.proc3825174.chain_789	3
scaffold_21	skipped_exon	7724644	7727560	+	asmbl_28764	none	STRG.24316.3,blat.proc3825176.chain_1476	2	STRG.24316.1	1
scaffold_4	alt_donor	16341161	16341162	-	asmbl_43158	none	STRG.5202.1	1	STRG.5202.2	1
scaffold_16	spliced_intron	3821260	3821374	-	asmbl_17004	none	Trinity_GG_10774_c0_g1_i1,blat.proc3825158.chain_314	2	STRG.19185.1,Trinity_GG_10774_c0_g1_i2,blat.proc3825158.chain_315	3
scaffold_14	retained_intron	4116590	4116724	+	asmbl_11973	none	STRG.16963.2,Trinity_GG_26646_c0_g1_i1,blat.proc3825172.chain_1739	3	STRG.16963.1,STRG.16963.3,Trinity_GG_26646_c0_g1_i3,Trinity_GG_26646_c0_g1_i5,blat.proc3825172.chain_1740,blat.proc3825172.chain_1741	6
scaffold_20	starts_in_intron	11101637	11101637	+	asmbl_27011	none	Trinity_GG_30385_c0_g1_i1,blat.proc3825176.chain_812	2	STRG.23628.1,STRG.23628.2,blat.proc3825176.chain_813,blat.proc3825176.chain_814	4
scaffold_4	alt_acceptor	4444071	4444072	+	asmbl_41271	none	STRG.4344.2,Trinity_GG_19733_c0_g1_i2,blat.proc3825166.chain_801	3	STRG.4344.1,Trinity_GG_19733_c0_g1_i1,blat.proc3825166.chain_800	3
scaffold_1	alt_acceptor	19044608	19044609	+	asmbl_2578,asmbl_2579	none	STRG.1335.1,Trinity_GG_18101_c0_g1_i2	2	STRG.1335.5,STRG.1335.7	2
scaffold_2	alt_acceptor	167660	167661	+	asmbl_24080,asmbl_24082	none	STRG.1522.2,blat.proc3825164.chain_1668	2	STRG.1522.1,blat.proc3825164.chain_1669,blat.proc3825164.chain_1671	3
scaffold_16	alt_donor	6096689	6096690	-	asmbl_17136,asmbl_17137,asmbl_17138,asmbl_17140	none	STRG.19342.1,blat.proc3825158.chain_498,blat.proc3825158.chain_499,blat.proc3825158.chain_500,blat.proc3825158.chain_502	5	STRG.19342.2,blat.proc3825158.chain_501	2
scaffold_23	alternate_exon	811093	811158	-	asmbl_30609,asmbl_30610	none	STRG.25583.1,STRG.25583.3	2	STRG.25583.2	1
scaffold_26	alt_donor	3345561	3345562	-	asmbl_35482,asmbl_35483,asmbl_35484	none	STRG.28013.1,STRG.28013.3,blat.proc3825162.chain_1262	3	STRG.28013.2	1
scaffold_1	ends_in_intron	12756605	12756605	-	asmbl_758,asmbl_759	none	Trinity_GG_445_c0_g1_i6,blat.proc3825148.chain_845,blat.proc3825148.chain_846	3	STRG.897.1,blat.proc3825148.chain_843	2
scaffold_5	spliced_intron	3935999	3936105	+	asmbl_45260	none	blat.proc3825166.chain_2095	1	STRG.5863.1,Trinity_GG_20532_c0_g1_i3,blat.proc3825166.chain_2097	3
scaffold_2	retained_intron	14191448	14192045	-	asmbl_23564,asmbl_23565,asmbl_23571	none	Trinity_GG_1338_c0_g1_i3,Trinity_GG_1338_c0_g1_i8,blat.proc3825148.chain_2412,blat.proc3825148.chain_2415,blat.proc3825148.chain_2416	5	STRG.2416.1,STRG.2416.2,STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414	5
scaffold_23	ends_in_intron	6630971	6630971	+	asmbl_31635	none	blat.proc3825176.chain_2899	1	STRG.26012.1,blat.proc3825176.chain_2894	2
scaffold_3	ends_in_intron	18345641	18345641	+	asmbl_40735	none	STRG.4039.2	1	STRG.4039.1,blat.proc3825166.chain_520	2
scaffold_7	retained_intron	13205270	13205387	+	asmbl_50315,asmbl_50318	none	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1972,blat.proc3825168.chain_1974	3	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1973,blat.proc3825168.chain_1975	4
scaffold_26	spliced_intron	6350865	6351156	-	asmbl_35683	none	STRG.28335.3	1	STRG.28335.4,blat.proc3825162.chain_1569	2
scaffold_8	alt_acceptor	9922006	9922007	-	asmbl_52072,asmbl_52073	none	STRG.10244.1,blat.proc3825152.chain_2453	2	STRG.10244.2	1
scaffold_9	retained_intron	13297182	13297316	-	asmbl_55420	none	STRG.11628.4	1	STRG.11628.2	1
scaffold_17	retained_intron	6390344	6390421	+	asmbl_18850	none	Trinity_GG_28437_c1_g1_i2,blat.proc3825174.chain_1152	2	blat.proc3825174.chain_1153	1
scaffold_3	alternate_exon	5683194	5683268	-	asmbl_38854	none	STRG.3234.1,Trinity_GG_1753_c0_g1_i1,blat.proc3825148.chain_3090	3	STRG.3234.2,blat.proc3825148.chain_3089	2
scaffold_13	spliced_intron	8831245	8831460	-	asmbl_9993,asmbl_9994	none	STRG.16159.1,Trinity_GG_9044_c0_g1_i3,blat.proc3825156.chain_998,blat.proc3825156.chain_999	4	Trinity_GG_9044_c0_g1_i2,blat.proc3825156.chain_996	2
scaffold_19	alt_acceptor	9461271	9461272	+	asmbl_21599	none	STRG.22376.2,blat.proc3825174.chain_3370	2	STRG.22376.1,blat.proc3825174.chain_3369	2
scaffold_4	spliced_intron	115885	116152	-	asmbl_42306	none	STRG.4109.1,blat.proc3825150.chain_312	2	STRG.4109.2,Trinity_GG_2279_c0_g1_i1,blat.proc3825150.chain_311	3
scaffold_13	alt_acceptor	366562	366563	-	asmbl_9307	none	STRG.15442.1,Trinity_GG_8663_c0_g1_i6,blat.proc3825156.chain_295	3	STRG.15442.4	1
scaffold_13	alt_acceptor	5815169	5815170	+	asmbl_10902	none	blat.proc3825172.chain_706	1	STRG.15896.1	1
scaffold_25	skipped_exon	2689435	2690331	+	asmbl_33403	none	STRG.27234.1	1	STRG.27234.2,blat.proc3825178.chain_309	2
scaffold_3	alternate_exon	11635012	11641666	+	asmbl_40365	none	blat.proc3825166.chain_109	1	STRG.3596.4	1
scaffold_7	spliced_intron	9782875	9783156	-	asmbl_51067,asmbl_51068	none	STRG.9172.2,blat.proc3825152.chain_1517	2	STRG.9172.1,blat.proc3825152.chain_1518	2
scaffold_2	skipped_exon	5706732	5707568	-	asmbl_23153	none	STRG.1962.1,blat.proc3825148.chain_1964	2	blat.proc3825148.chain_1961	1
scaffold_15	starts_in_intron	12132471	12132471	-	asmbl_14563	none	blat.proc3825156.chain_3497,blat.proc3825156.chain_3498	2	STRG.18689.1,blat.proc3825156.chain_3496,blat.proc3825156.chain_3499,blat.proc3825156.chain_3500	4
scaffold_11	alt_acceptor	13253413	13253414	-	asmbl_7126	none	blat.proc3825154.chain_2770	1	STRG.14198.3,blat.proc3825154.chain_2771	2
scaffold_6	alt_acceptor	7267942	7267943	-	asmbl_48488	none	blat.proc3825152.chain_31	1	STRG.7632.1,blat.proc3825152.chain_32	2
scaffold_28	alt_acceptor	9565713	9565714	+	asmbl_37790	none	STRG.29985.1	1	blat.proc3825178.chain_3096	1
scaffold_1	spliced_intron	4864196	4864311	-	asmbl_217	none	STRG.292.1,blat.proc3825148.chain_258	2	STRG.292.2,blat.proc3825148.chain_256	2
scaffold_1	alternate_exon	16486786	16488419	-	asmbl_990,asmbl_991,asmbl_998	none	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1101,blat.proc3825148.chain_1102	5	blat.proc3825148.chain_1098	1
scaffold_2	ends_in_intron	6764910	6764910	+	asmbl_24493	none	Trinity_GG_18452_c1_g1_i1,blat.proc3825164.chain_2154	2	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i2,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i8,Trinity_GG_18452_c0_g1_i9,blat.proc3825164.chain_2146,blat.proc3825164.chain_2147,blat.proc3825164.chain_2148,blat.proc3825164.chain_2149,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	15
scaffold_7	spliced_intron	15248021	15248121	+	asmbl_50419,asmbl_50420,asmbl_50421	none	STRG.9540.1,STRG.9540.2,STRG.9540.3,blat.proc3825168.chain_2111,blat.proc3825168.chain_2112	5	blat.proc3825168.chain_2114	1
scaffold_1	retained_exon	15279892	15280373	+	asmbl_2438	none	STRG.1094.3,blat.proc3825164.chain_1250	2	STRG.1094.2	1
scaffold_25	starts_in_intron	6753954	6753954	+	asmbl_33641	none	Trinity_GG_32444_c0_g1_i1,blat.proc3825178.chain_569	2	STRG.27536.1	1
scaffold_27	alt_donor	5927734	5927735	-	asmbl_37041	none	STRG.29001.2,blat.proc3825162.chain_2240	2	STRG.29001.1,blat.proc3825162.chain_2239	2
scaffold_8	alt_acceptor	9643594	9643595	+	asmbl_53093,asmbl_53095	none	STRG.10219.3,STRG.10219.5	2	STRG.10219.1,STRG.10219.2,blat.proc3825168.chain_2808,blat.proc3825168.chain_2809,blat.proc3825168.chain_2810	5
scaffold_7	spliced_intron	12388225	12388322	-	asmbl_51204,asmbl_51205,asmbl_51207,asmbl_51208,asmbl_51210	none	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1657,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1661	6	blat.proc3825152.chain_1655,blat.proc3825152.chain_1660	2
scaffold_23	starts_in_intron	8811804	8811804	+	asmbl_31784	none	blat.proc3825176.chain_3123	1	STRG.26148.1,STRG.26148.2,blat.proc3825176.chain_3119,blat.proc3825176.chain_3122	4
scaffold_11	alt_donor	13092586	13092587	+	asmbl_6034,asmbl_6035	none	STRG.14188.2,blat.proc3825170.chain_2746,blat.proc3825170.chain_2747	3	Trinity_GG_25144_c0_g1_i1,Trinity_GG_25144_c1_g1_i1,blat.proc3825170.chain_2745,blat.proc3825170.chain_2752	4
scaffold_15	alternate_exon	10880862	10881691	-	asmbl_14462	none	STRG.18571.3	1	STRG.18571.2,Trinity_GG_10429_c1_g1_i1,blat.proc3825156.chain_3424	3
scaffold_11	alternate_exon	3496309	3498002	+	asmbl_5440	none	STRG.13484.1	1	blat.proc3825170.chain_2034	1
scaffold_4	alt_acceptor	11075572	11075573	+	asmbl_41698	none	STRG.4828.1,Trinity_GG_20019_c0_g1_i1,blat.proc3825166.chain_1286	3	STRG.4828.2,Trinity_GG_20019_c0_g1_i2,blat.proc3825166.chain_1287	3
scaffold_24	retained_intron	31492	31533	+	asmbl_32001	none	STRG.26314.1	1	STRG.26314.2	1
scaffold_3	alt_donor	14186363	14186364	-	asmbl_39335	none	blat.proc3825148.chain_3668	1	STRG.3761.2,STRG.3761.5,blat.proc3825148.chain_3666	3
scaffold_13	starts_in_intron	385226	385226	-	asmbl_9332	none	blat.proc3825156.chain_286	1	STRG.15438.1,STRG.15438.2,blat.proc3825156.chain_284,blat.proc3825156.chain_287	4
scaffold_18	alternate_exon	8595277	8598790	+	asmbl_20848	none	STRG.21525.2	1	STRG.21525.1,STRG.21525.3,blat.proc3825174.chain_2586	3
scaffold_15	skipped_exon	15448589	15449160	+	asmbl_15786	none	Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3626	2	STRG.18935.1,STRG.18935.2,Trinity_GG_27706_c0_g1_i1,blat.proc3825172.chain_3619,blat.proc3825172.chain_3624	5
scaffold_22	spliced_intron	7893263	7893360	-	asmbl_29434	none	STRG.25146.1	1	STRG.25146.2,blat.proc3825160.chain_2306	2
scaffold_15	retained_intron	4491295	4491494	+	asmbl_15148	none	blat.proc3825172.chain_2853	1	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2857,blat.proc3825172.chain_2858,blat.proc3825172.chain_2859	9
scaffold_3	alternate_exon	16345425	16345776	-	asmbl_39500	none	Trinity_GG_2173_c3_g1_i1,blat.proc3825150.chain_121	2	STRG.3910.1,blat.proc3825150.chain_114,blat.proc3825150.chain_115	3
scaffold_3	retained_intron	1089470	1089642	+	asmbl_39829	none	STRG.2937.1,blat.proc3825164.chain_3168	2	STRG.2937.2,STRG.2937.3	2
scaffold_26	alt_donor	9033613	9033614	+	asmbl_35198	none	STRG.28470.1,Trinity_GG_33065_c0_g1_i3,blat.proc3825178.chain_1591	3	STRG.28470.2,Trinity_GG_33065_c0_g1_i1,blat.proc3825178.chain_1592	3
scaffold_15	alt_donor	2563261	2563262	+	asmbl_15065	none	STRG.18045.2	1	STRG.18045.1,STRG.18045.3	2
scaffold_15	alternate_exon	10656856	10657064	-	asmbl_14440,asmbl_14446	none	STRG.18558.2,blat.proc3825156.chain_3419	2	STRG.18558.1,STRG.18558.4,blat.proc3825156.chain_3413,blat.proc3825156.chain_3415	4
scaffold_24	spliced_intron	7864239	7864324	-	asmbl_33075	none	blat.proc3825162.chain_224	1	STRG.26842.1,blat.proc3825162.chain_223	2
scaffold_9	alt_donor	6905102	6905103	-	asmbl_55093	none	STRG.11202.1,Trinity_GG_6207_c0_g1_i1,blat.proc3825152.chain_3443	3	Trinity_GG_6207_c0_g1_i5,blat.proc3825152.chain_3441	2
scaffold_18	alt_acceptor	9167910	9167911	+	asmbl_20878,asmbl_20879	none	STRG.21559.1,STRG.21559.3,Trinity_GG_29198_c0_g1_i2,blat.proc3825174.chain_2557	4	STRG.21559.2	1
scaffold_2	retained_intron	883173	884775	+	asmbl_24125	none	STRG.1564.2	1	STRG.1564.3	1
scaffold_14	alt_acceptor	13897694	13897695	+	asmbl_12509,asmbl_12512	none	STRG.17673.2,STRG.17673.3,blat.proc3825172.chain_2390	3	STRG.17673.1,STRG.17673.4,blat.proc3825172.chain_2392	3
scaffold_11	alt_acceptor	11931045	11931046	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.3	1
scaffold_6	alt_donor	13925551	13925552	-	asmbl_48963	none	STRG.8145.1,blat.proc3825152.chain_577	2	STRG.8145.2,blat.proc3825152.chain_578	2
scaffold_10	alt_acceptor	2766120	2766121	+	asmbl_3010	none	STRG.12096.1,blat.proc3825170.chain_857	2	STRG.12096.2,blat.proc3825170.chain_856	2
scaffold_16	alt_donor	6186097	6186098	+	asmbl_16288	none	STRG.19353.2	1	STRG.19353.1,Trinity_GG_27895_c0_g1_i1,blat.proc3825174.chain_246	3
scaffold_2	skipped_exon	2454814	2455483	-	asmbl_22894	none	STRG.1690.2,blat.proc3825148.chain_1631	2	STRG.1690.1,blat.proc3825148.chain_1632	2
scaffold_6	spliced_intron	13167852	13167977	-	asmbl_48884,asmbl_48890	none	STRG.8074.1,blat.proc3825152.chain_472,blat.proc3825152.chain_478	3	STRG.8074.2,blat.proc3825152.chain_476,blat.proc3825152.chain_477	3
scaffold_6	ends_in_intron	12626580	12626580	-	asmbl_48837,asmbl_48838,asmbl_48839	none	Trinity_GG_4556_c0_g1_i6,blat.proc3825152.chain_412,blat.proc3825152.chain_414,blat.proc3825152.chain_415	4	STRG.8021.1,Trinity_GG_4556_c0_g1_i2,blat.proc3825152.chain_411	3
scaffold_15	retained_intron	13972065	13972165	+	asmbl_15662	none	blat.proc3825172.chain_3459	1	STRG.18831.1,Trinity_GG_27636_c0_g1_i2,blat.proc3825172.chain_3460	3
scaffold_6	ends_in_intron	3042370	3042370	-	asmbl_48221	none	Trinity_GG_4104_c0_g1_i1,blat.proc3825150.chain_3454	2	STRG.7310.1,STRG.7310.2,STRG.7310.3,blat.proc3825150.chain_3455,blat.proc3825150.chain_3456,blat.proc3825150.chain_3457	6
scaffold_26	alternate_exon	5664460	5664621	-	asmbl_35608,asmbl_35609,asmbl_35610,asmbl_35611	none	STRG.28272.1,STRG.28272.2,STRG.28272.3,blat.proc3825162.chain_1526,blat.proc3825162.chain_1528,blat.proc3825162.chain_1532	6	blat.proc3825162.chain_1527,blat.proc3825162.chain_1529	2
scaffold_1	starts_in_intron	12760439	12760439	-	asmbl_760	none	STRG.897.2	1	STRG.897.1,blat.proc3825148.chain_843,blat.proc3825148.chain_844,blat.proc3825148.chain_845	4
scaffold_8	ends_in_intron	8793490	8793490	-	asmbl_51974	none	blat.proc3825152.chain_2403	1	STRG.10137.1,blat.proc3825152.chain_2401,blat.proc3825152.chain_2402	3
scaffold_4	starts_in_intron	17579640	17579640	+	asmbl_42062,asmbl_42063,asmbl_42064	none	STRG.5347.2,STRG.5347.3,STRG.5347.4	3	STRG.5347.1	1
scaffold_17	retained_intron	1592933	1593714	+	asmbl_18614	none	STRG.19996.1,Trinity_GG_28259_c0_g1_i1,blat.proc3825174.chain_867	3	Trinity_GG_28259_c0_g1_i2,blat.proc3825174.chain_866	2
scaffold_8	retained_exon	9128525	9128688	-	asmbl_52007,asmbl_52010	none	STRG.10172.3,STRG.10172.4	2	STRG.10172.1	1
scaffold_14	starts_in_intron	10382813	10382813	+	asmbl_12312	none	Trinity_GG_26829_c1_g1_i1,blat.proc3825172.chain_2066	2	STRG.17387.2	1
scaffold_15	alternate_exon	15345897	15346146	+	asmbl_15751	none	STRG.18919.3,Trinity_GG_27682_c0_g1_i1	2	STRG.18919.1	1
scaffold_15	retained_intron	3363315	3363443	-	asmbl_14088	none	STRG.18111.2,Trinity_GG_10185_c0_g1_i4,blat.proc3825156.chain_2950	3	STRG.18111.1,blat.proc3825156.chain_2949	2
scaffold_9	ends_in_intron	11842077	11842077	-	asmbl_55332	none	blat.proc3825152.chain_3663	1	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3664	7
scaffold_22	alt_donor	7437749	7437750	-	asmbl_29398,asmbl_29401	none	STRG.25084.2,STRG.25084.5,blat.proc3825160.chain_2246,blat.proc3825160.chain_2248	4	STRG.25084.1,STRG.25084.3,STRG.25084.4,blat.proc3825160.chain_2245,blat.proc3825160.chain_2247	5
scaffold_8	starts_in_intron	18423746	18423746	+	asmbl_53548	none	Trinity_GG_23252_c0_g1_i3,blat.proc3825168.chain_3240	2	STRG.10739.1	1
scaffold_23	alt_donor	5579027	5579028	+	asmbl_31579,asmbl_31583,asmbl_31584,asmbl_31585	none	STRG.25933.1,STRG.25933.4,blat.proc3825176.chain_2835,blat.proc3825176.chain_2839,blat.proc3825176.chain_2840	5	STRG.25933.2,STRG.25933.3,STRG.25933.5,blat.proc3825176.chain_2834,blat.proc3825176.chain_2837,blat.proc3825176.chain_2838,blat.proc3825176.chain_2841	7
scaffold_16	skipped_exon	7238165	7239491	-	asmbl_17170	none	STRG.19399.5,blat.proc3825158.chain_476	2	STRG.19399.1,STRG.19399.2,STRG.19399.3,STRG.19399.4	4
scaffold_14	spliced_intron	15638709	15638796	+	asmbl_12637	none	STRG.17807.1,Trinity_GG_27094_c0_g1_i2,blat.proc3825172.chain_2515	3	STRG.17807.2	1
scaffold_3	skipped_exon	10628316	10630201	+	asmbl_40279	none	STRG.3513.1,blat.proc3825164.chain_3684	2	STRG.3513.2,STRG.3513.4,STRG.3513.5,STRG.3513.6,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688,blat.proc3825164.chain_3689	8
scaffold_17	alt_acceptor	2709579	2709580	+	asmbl_18688	none	STRG.20071.1	1	STRG.20071.2,blat.proc3825174.chain_937,blat.proc3825174.chain_938	3
scaffold_4	spliced_intron	5651946	5652054	-	asmbl_42616,asmbl_42618,asmbl_42620,asmbl_42621,asmbl_42625,asmbl_42627	none	STRG.4472.1,STRG.4472.2,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_662,blat.proc3825150.chain_665,blat.proc3825150.chain_666,blat.proc3825150.chain_667,blat.proc3825150.chain_668	10	STRG.4472.3,blat.proc3825150.chain_658,blat.proc3825150.chain_663,blat.proc3825150.chain_664	4
scaffold_24	alternate_exon	9084956	9084989	+	asmbl_32502	none	STRG.26951.3	1	STRG.26951.1,STRG.26951.2,blat.proc3825178.chain_158	3
scaffold_2	retained_intron	166805	166882	+	asmbl_24081	none	blat.proc3825164.chain_1669	1	STRG.1522.1,STRG.1522.2,blat.proc3825164.chain_1668,blat.proc3825164.chain_1671	4
scaffold_12	retained_intron	14990698	14991070	-	asmbl_9024	none	Trinity_GG_8566_c0_g1_i5,blat.proc3825156.chain_117	2	STRG.15298.2,Trinity_GG_8566_c0_g1_i4,blat.proc3825156.chain_119	3
scaffold_7	spliced_intron	13866490	13867075	-	asmbl_51321	none	STRG.9480.5	1	STRG.9480.2,blat.proc3825152.chain_1823	2
scaffold_24	starts_in_intron	1909728	1909728	-	asmbl_32748	none	blat.proc3825160.chain_3499	1	blat.proc3825160.chain_3501	1
scaffold_5	alt_acceptor	16282534	16282535	+	asmbl_46076,asmbl_46078	none	STRG.6827.2,Trinity_GG_21030_c0_g1_i5,Trinity_GG_21030_c0_g1_i6,blat.proc3825166.chain_2982,blat.proc3825166.chain_2984	5	Trinity_GG_21030_c0_g1_i3,blat.proc3825166.chain_2983	2
scaffold_28	starts_in_intron	231646	231646	+	asmbl_37260	none	blat.proc3825178.chain_2481	1	STRG.29253.1,STRG.29253.2,blat.proc3825178.chain_2480,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483,blat.proc3825178.chain_2485	6
scaffold_13	alternate_exon	6048623	6050994	-	asmbl_9763,asmbl_9766	none	STRG.15915.1,STRG.15915.5,blat.proc3825156.chain_778,blat.proc3825156.chain_782	4	STRG.15915.2,Trinity_GG_8939_c1_g1_i1,blat.proc3825156.chain_780,blat.proc3825156.chain_786	4
scaffold_19	alt_donor	13262293	13262294	-	asmbl_22633	none	STRG.22647.2	1	STRG.22647.1,blat.proc3825158.chain_3491,blat.proc3825158.chain_3493	3
scaffold_2	retained_intron	13064373	13064567	+	asmbl_24816	none	blat.proc3825164.chain_2499	1	STRG.2332.1,STRG.2332.2,blat.proc3825164.chain_2494,blat.proc3825164.chain_2495,blat.proc3825164.chain_2496,blat.proc3825164.chain_2497,blat.proc3825164.chain_2498,blat.proc3825164.chain_2500	8
scaffold_9	skipped_exon	4898175	4899091	+	asmbl_53967	none	blat.proc3825168.chain_3562	1	STRG.11064.1,STRG.11064.2	2
scaffold_1	alt_acceptor	11177132	11177133	+	asmbl_2087	none	blat.proc3825164.chain_908	1	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_906,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915	10
scaffold_2	starts_in_intron	3900839	3900839	+	asmbl_24323,asmbl_24324	none	STRG.1826.4,Trinity_GG_18352_c0_g2_i1	2	STRG.1826.1,STRG.1826.2,STRG.1826.3,blat.proc3825164.chain_1999,blat.proc3825164.chain_2000,blat.proc3825164.chain_2002,blat.proc3825164.chain_2003,blat.proc3825164.chain_2004	8
scaffold_1	starts_in_intron	14429021	14429021	+	asmbl_2397	none	blat.proc3825164.chain_1218	1	STRG.1046.1,STRG.1046.2,STRG.1046.3,blat.proc3825164.chain_1219,blat.proc3825164.chain_1220	5
scaffold_2	ends_in_intron	61964	61964	+	asmbl_24071	none	Trinity_GG_18172_c0_g1_i1,blat.proc3825164.chain_1637	2	STRG.1501.1,Trinity_GG_18172_c0_g1_i2,blat.proc3825164.chain_1636	3
scaffold_17	alt_donor	11049394	11049395	+	asmbl_19202	none	STRG.20662.2	1	STRG.20662.1,blat.proc3825174.chain_1542,blat.proc3825174.chain_1544	3
scaffold_5	starts_in_intron	10297511	10297511	-	asmbl_44341	none	blat.proc3825150.chain_2559	1	STRG.6332.1,STRG.6332.2,blat.proc3825150.chain_2557,blat.proc3825150.chain_2558	4
scaffold_17	retained_exon	5490393	5490524	-	asmbl_17939	none	STRG.20268.1,blat.proc3825158.chain_1253	2	STRG.20268.2	1
scaffold_1	alternate_exon	5736724	5737218	+	asmbl_1775	none	STRG.390.2	1	blat.proc3825164.chain_528	1
scaffold_21	retained_intron	3117600	3118195	-	asmbl_27510	none	STRG.23938.1,Trinity_GG_13300_c0_g1_i3,blat.proc3825160.chain_997	3	STRG.23938.2,blat.proc3825160.chain_996	2
scaffold_2	retained_intron	4836305	4836534	-	asmbl_23104	none	blat.proc3825148.chain_1919	1	STRG.1905.1,blat.proc3825148.chain_1918,blat.proc3825148.chain_1922	3
scaffold_2	skipped_exon	893116	894265	+	asmbl_24137,asmbl_24139,asmbl_24144	none	STRG.1566.2,STRG.1566.3,STRG.1566.4,blat.proc3825164.chain_1730,blat.proc3825164.chain_1731	5	STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725	3
scaffold_11	alternate_exon	12410267	12410342	-	asmbl_7087	none	STRG.14158.3,blat.proc3825154.chain_2693	2	STRG.14158.1	1
scaffold_8	ends_in_intron	17495949	17495949	+	asmbl_53485	none	Trinity_GG_23212_c0_g1_i1,blat.proc3825168.chain_3149	2	STRG.10682.1,STRG.10682.3,STRG.10682.5,blat.proc3825168.chain_3150,blat.proc3825168.chain_3151,blat.proc3825168.chain_3152,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	8
scaffold_8	alternate_exon	15683863	15684691	-	asmbl_52336	none	STRG.10571.1,Trinity_GG_5873_c1_g1_i1,blat.proc3825152.chain_2801	3	STRG.10571.2,Trinity_GG_5873_c0_g1_i2,blat.proc3825152.chain_2800	3
scaffold_10	retained_exon	16822208	16822303	+	asmbl_3726	none	STRG.13127.1	1	STRG.13127.2	1
scaffold_3	ends_in_intron	10276906	10276906	+	asmbl_40253,asmbl_40255,asmbl_40256,asmbl_40257	none	blat.proc3825164.chain_3727,blat.proc3825164.chain_3730,blat.proc3825164.chain_3732,blat.proc3825164.chain_3736	4	STRG.3467.1,blat.proc3825164.chain_3728,blat.proc3825164.chain_3734,blat.proc3825164.chain_3735	4
scaffold_19	skipped_exon	9376163	9378679	-	asmbl_22329	none	STRG.22371.1,blat.proc3825158.chain_3160	2	STRG.22371.2	1
scaffold_10	starts_in_intron	3820376	3820376	+	asmbl_3078	none	blat.proc3825170.chain_919	1	STRG.12216.1,blat.proc3825170.chain_920	2
scaffold_3	retained_intron	14774473	14774932	-	asmbl_39424	none	STRG.3822.2,blat.proc3825150.chain_33	2	STRG.3822.1,blat.proc3825150.chain_35	2
scaffold_13	starts_in_intron	4472201	4472201	-	asmbl_9636	none	blat.proc3825156.chain_653	1	STRG.15773.1	1
scaffold_8	alt_donor	5757281	5757282	+	asmbl_52904	none	STRG.9994.1,Trinity_GG_22874_c0_g1_i1,blat.proc3825168.chain_2559	3	STRG.9994.2	1
scaffold_2	starts_in_intron	7937652	7937652	+	asmbl_24601	none	STRG.2090.2,Trinity_GG_18487_c0_g1_i1,blat.proc3825164.chain_2244	3	STRG.2090.1,Trinity_GG_18487_c0_g1_i6,Trinity_GG_18487_c0_g1_i7,Trinity_GG_18487_c0_g1_i9,Trinity_GG_18487_c0_g2_i1,blat.proc3825164.chain_2246,blat.proc3825164.chain_2247,blat.proc3825164.chain_2250	8
scaffold_5	alt_donor	8680296	8680297	-	asmbl_44223,asmbl_44225	none	STRG.6205.1,blat.proc3825150.chain_2389,blat.proc3825150.chain_2390	3	STRG.6205.2,blat.proc3825150.chain_2388	2
scaffold_1	retained_intron	5746244	5746355	-	asmbl_300	none	blat.proc3825148.chain_349	1	STRG.375.1,blat.proc3825148.chain_348	2
scaffold_13	retained_intron	6602967	6603353	-	asmbl_9804	none	STRG.15949.1,blat.proc3825156.chain_791	2	STRG.15949.2,blat.proc3825156.chain_790	2
scaffold_22	spliced_intron	6128912	6129087	+	asmbl_30096,asmbl_30097,asmbl_30098,asmbl_30100,asmbl_30102,asmbl_30103	none	STRG.24968.1,STRG.24968.4,STRG.24968.7,blat.proc3825176.chain_2118,blat.proc3825176.chain_2120,blat.proc3825176.chain_2121	6	STRG.24968.6,blat.proc3825176.chain_2119	2
scaffold_24	starts_in_intron	162957	162957	-	asmbl_32700	none	Trinity_GG_14715_c0_g1_i2,blat.proc3825160.chain_3449	2	STRG.26320.2,Trinity_GG_14715_c0_g1_i1,Trinity_GG_14715_c0_g1_i3,blat.proc3825160.chain_3447,blat.proc3825160.chain_3448	5
scaffold_19	spliced_intron	11483212	11483436	-	asmbl_22409	none	STRG.22486.2,blat.proc3825158.chain_3247	2	STRG.22486.1,Trinity_GG_12512_c0_g1_i1,blat.proc3825158.chain_3245,blat.proc3825158.chain_3246,blat.proc3825158.chain_3250	5
scaffold_1	retained_intron	175065	175198	-	asmbl_11,asmbl_12,asmbl_13	none	Trinity_GG_12_c0_g1_i1,Trinity_GG_12_c0_g1_i4,Trinity_GG_12_c0_g1_i5,blat.proc3825148.chain_23,blat.proc3825148.chain_24,blat.proc3825148.chain_27,blat.proc3825148.chain_28	7	STRG.16.1,STRG.16.2,blat.proc3825148.chain_25,blat.proc3825148.chain_26	4
scaffold_6	retained_intron	8172176	8172279	-	asmbl_48535,asmbl_48536,asmbl_48537	none	Trinity_GG_4351_c0_g1_i4,blat.proc3825152.chain_88,blat.proc3825152.chain_90	3	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_87,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93	7
scaffold_22	starts_in_intron	3042114	3042114	+	asmbl_29950	none	Trinity_GG_30981_c0_g1_i2,blat.proc3825176.chain_1850	2	STRG.24790.1,blat.proc3825176.chain_1849,blat.proc3825176.chain_1851	3
scaffold_14	retained_intron	3588641	3588755	+	asmbl_11952,asmbl_11953	none	STRG.16942.2,STRG.16942.4,blat.proc3825172.chain_1711	3	STRG.16942.3	1
scaffold_27	starts_in_intron	9870380	9870380	+	asmbl_36534	none	Trinity_GG_33476_c0_g1_i1,blat.proc3825178.chain_2379	2	STRG.29213.1	1
scaffold_5	retained_exon	136010	136166	+	asmbl_45072	none	STRG.5577.1	1	STRG.5577.2	1
scaffold_1	spliced_intron	854276	854519	+	asmbl_1424,asmbl_1428,asmbl_1429,asmbl_1430	none	STRG.43.1,STRG.43.2,STRG.43.3,STRG.43.4	4	Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142	2
scaffold_6	alt_acceptor	14900003	14900004	+	asmbl_47645	none	STRG.8266.1,Trinity_GG_21865_c0_g1_i3,blat.proc3825168.chain_751	3	STRG.8266.2,Trinity_GG_21865_c0_g1_i1,blat.proc3825168.chain_752	3
scaffold_1	retained_intron	5964053	5964145	+	asmbl_1809	none	Trinity_GG_17575_c0_g1_i3,blat.proc3825164.chain_541	2	STRG.400.1,STRG.400.2,blat.proc3825164.chain_540	3
scaffold_28	alt_acceptor	3329538	3329539	+	asmbl_37476	none	STRG.29555.1	1	blat.proc3825178.chain_2631	1
scaffold_17	starts_in_intron	8159179	8159179	+	asmbl_18941	none	blat.proc3825174.chain_1264	1	STRG.20433.1,STRG.20433.2,blat.proc3825174.chain_1263,blat.proc3825174.chain_1265	4
scaffold_5	starts_in_intron	15683067	15683067	+	asmbl_46008	none	blat.proc3825166.chain_2858	1	STRG.6761.1,blat.proc3825166.chain_2859,blat.proc3825166.chain_2862	3
scaffold_3	skipped_exon	5928825	5929630	-	asmbl_38873	none	blat.proc3825148.chain_3098	1	STRG.3252.1,blat.proc3825148.chain_3097,blat.proc3825148.chain_3100	3
scaffold_3	alt_acceptor	11274392	11274393	+	asmbl_40338	none	STRG.3555.2,Trinity_GG_19329_c0_g1_i2,blat.proc3825166.chain_84	3	STRG.3555.1,Trinity_GG_19329_c0_g1_i1,blat.proc3825166.chain_85	3
scaffold_9	alt_acceptor	11842903	11842904	-	asmbl_55326	none	STRG.11513.2	1	STRG.11513.1,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660	4
scaffold_11	ends_in_intron	15705975	15705975	-	asmbl_7213	none	STRG.14311.2,Trinity_GG_7987_c0_g1_i1,blat.proc3825154.chain_2825	3	STRG.14311.1	1
scaffold_17	ends_in_intron	5725846	5725846	-	asmbl_17954	none	Trinity_GG_11397_c0_g1_i1,blat.proc3825158.chain_1320	2	STRG.20273.1,STRG.20273.3,blat.proc3825158.chain_1321	3
scaffold_5	spliced_intron	10529716	10530671	+	asmbl_45680	none	STRG.6341.2	1	STRG.6341.1,Trinity_GG_20761_c0_g1_i1,Trinity_GG_20761_c0_g1_i2,blat.proc3825166.chain_2538,blat.proc3825166.chain_2539	5
scaffold_24	alternate_exon	4317229	4318760	+	asmbl_32188	none	STRG.26600.3,Trinity_GG_31987_c2_g1_i1,blat.proc3825176.chain_3496,blat.proc3825176.chain_3497	4	Trinity_GG_31987_c0_g1_i1,Trinity_GG_31987_c0_g1_i2,blat.proc3825176.chain_3494,blat.proc3825176.chain_3495	4
scaffold_15	retained_intron	15502347	15502438	+	asmbl_15802	none	Trinity_GG_27698_c0_g1_i5,blat.proc3825172.chain_3600	2	STRG.18943.1,STRG.18943.2,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602,blat.proc3825172.chain_3603	9
scaffold_2	skipped_exon	11603158	11605993	+	asmbl_24758,asmbl_24761,asmbl_24762,asmbl_24764,asmbl_24765	none	STRG.2268.1,STRG.2268.2,STRG.2268.3,blat.proc3825164.chain_2377,blat.proc3825164.chain_2378,blat.proc3825164.chain_2379,blat.proc3825164.chain_2382	7	blat.proc3825164.chain_2376,blat.proc3825164.chain_2380,blat.proc3825164.chain_2381	3
scaffold_13	alternate_exon	14484999	14485037	-	asmbl_10193	none	STRG.16499.1	1	STRG.16499.2	1
scaffold_6	alt_donor	1746305	1746306	+	asmbl_46740	none	STRG.7231.3	1	STRG.7231.1,STRG.7231.2,Trinity_GG_21249_c0_g1_i1,blat.proc3825166.chain_3354	4
scaffold_28	ends_in_intron	5234695	5234695	-	asmbl_38269	none	Trinity_GG_16598_c0_g1_i7,blat.proc3825162.chain_2779	2	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2780,blat.proc3825162.chain_2781,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2786,blat.proc3825162.chain_2787	8
scaffold_15	retained_intron	5144985	5145081	+	asmbl_15193	none	blat.proc3825172.chain_2886	1	STRG.18222.1,blat.proc3825172.chain_2885,blat.proc3825172.chain_2887	3
scaffold_12	retained_intron	5635890	5636032	-	asmbl_8518	none	Trinity_GG_8225_c0_g1_i1,blat.proc3825154.chain_3253	2	STRG.14715.1,STRG.14715.2,blat.proc3825154.chain_3251,blat.proc3825154.chain_3252	4
scaffold_28	alt_donor	540487	540488	-	asmbl_37910	none	STRG.29277.2,blat.proc3825162.chain_2441	2	STRG.29277.1,STRG.29277.3,blat.proc3825162.chain_2442,blat.proc3825162.chain_2443	4
scaffold_2	spliced_intron	14220662	14220786	-	asmbl_23580,asmbl_23583,asmbl_23584	none	STRG.2418.2,blat.proc3825148.chain_2354,blat.proc3825148.chain_2357,blat.proc3825148.chain_2358	4	blat.proc3825148.chain_2355,blat.proc3825148.chain_2356	2
scaffold_14	skipped_exon	7295227	7295668	+	asmbl_12149	none	STRG.17169.2,blat.proc3825172.chain_1940	2	STRG.17169.1,blat.proc3825172.chain_1939,blat.proc3825172.chain_1941	3
scaffold_23	alt_acceptor	4503352	4503353	+	asmbl_31517	none	STRG.25867.2,Trinity_GG_31575_c0_g1_i1,blat.proc3825176.chain_2793	3	STRG.25867.1,Trinity_GG_31575_c0_g1_i2,blat.proc3825176.chain_2792	3
scaffold_6	ends_in_intron	16605055	16605055	+	asmbl_47707	none	blat.proc3825168.chain_832	1	STRG.8386.1,STRG.8386.2,STRG.8386.3,blat.proc3825168.chain_828,blat.proc3825168.chain_830	5
scaffold_9	alt_donor	6743427	6743428	-	asmbl_55076	none	STRG.11188.2	1	STRG.11188.1,blat.proc3825152.chain_3414,blat.proc3825152.chain_3417	3
scaffold_13	alt_acceptor	9535183	9535184	-	asmbl_10034	none	STRG.16216.3	1	STRG.16216.1,STRG.16216.2,STRG.16216.4,STRG.16216.5,blat.proc3825156.chain_1123,blat.proc3825156.chain_1124	6
scaffold_12	starts_in_intron	3783115	3783115	-	asmbl_8368	none	Trinity_GG_8128_c0_g1_i1,blat.proc3825154.chain_3066	2	STRG.14582.1,blat.proc3825154.chain_3067	2
scaffold_11	alternate_exon	8790438	8791012	-	asmbl_6876	none	STRG.13904.2	1	blat.proc3825170.chain_2482,blat.proc3825170.chain_2483,blat.proc3825170.chain_2484	3
scaffold_7	retained_intron	4884544	4884813	+	asmbl_49752	none	STRG.8834.1,blat.proc3825168.chain_1303	2	STRG.8834.2,blat.proc3825168.chain_1305	2
scaffold_4	ends_in_intron	12690202	12690202	-	asmbl_42952,asmbl_42953	none	blat.proc3825150.chain_1018,blat.proc3825150.chain_1021	2	STRG.4910.1,blat.proc3825150.chain_1019	2
scaffold_12	starts_in_intron	10591243	10591243	+	asmbl_7943	none	Trinity_GG_25591_c0_g1_i1,blat.proc3825170.chain_3538	2	STRG.15030.1,Trinity_GG_25591_c0_g1_i2,blat.proc3825170.chain_3539	3
scaffold_27	spliced_intron	5320907	5320932	-	asmbl_37003	none	STRG.28952.1	1	Trinity_GG_16238_c0_g1_i1,blat.proc3825162.chain_2188	2
scaffold_6	alt_donor	1746423	1746424	+	asmbl_46735,asmbl_46739	none	STRG.7231.1,STRG.7231.2,Trinity_GG_21249_c0_g1_i1,blat.proc3825166.chain_3354	4	STRG.7231.3	1
scaffold_1	alt_acceptor	6920062	6920063	-	asmbl_405	none	blat.proc3825148.chain_430	1	STRG.486.1,blat.proc3825148.chain_432	2
scaffold_14	alternate_exon	2487324	2487390	+	asmbl_11868	none	Trinity_GG_26585_c1_g1_i2	1	STRG.16863.1,Trinity_GG_26585_c1_g1_i1	2
scaffold_4	alternate_exon	7026185	7026423	+	asmbl_41444,asmbl_41445	none	STRG.4537.2,blat.proc3825166.chain_995,blat.proc3825166.chain_997	3	STRG.4537.1,blat.proc3825166.chain_996	2
scaffold_14	spliced_intron	15566459	15566494	+	asmbl_12619,asmbl_12622,asmbl_12623,asmbl_12624	none	STRG.17796.1,STRG.17796.2,STRG.17796.3,blat.proc3825172.chain_2531,blat.proc3825172.chain_2533	5	blat.proc3825172.chain_2535	1
scaffold_10	ends_in_intron	13916117	13916117	+	asmbl_3631	none	blat.proc3825170.chain_1597	1	STRG.12983.1,STRG.12983.2,STRG.12983.3,blat.proc3825170.chain_1594,blat.proc3825170.chain_1595,blat.proc3825170.chain_1596	6
scaffold_11	spliced_intron	3698054	3698259	+	asmbl_5456	none	STRG.13489.1,blat.proc3825170.chain_1994	2	Trinity_GG_24702_c0_g1_i1,blat.proc3825170.chain_1995	2
scaffold_11	alt_donor	8600562	8600563	+	asmbl_5813	none	STRG.13876.3	1	Trinity_GG_24974_c0_g1_i3,blat.proc3825170.chain_2448	2
scaffold_7	ends_in_intron	16241125	16241125	+	asmbl_50470	none	blat.proc3825168.chain_2103	1	STRG.9593.1	1
scaffold_18	starts_in_intron	2006641	2006641	-	asmbl_19687	none	STRG.21105.2	1	STRG.21105.3,STRG.21105.4,blat.proc3825158.chain_2089	3
scaffold_3	spliced_intron	14700578	14700686	-	asmbl_39412	none	STRG.3818.3	1	STRG.3818.1,blat.proc3825150.chain_13	2
scaffold_12	ends_in_intron	7616843	7616843	-	asmbl_8603,asmbl_8607,asmbl_8608,asmbl_8609	none	STRG.14840.3,STRG.14840.4,STRG.14840.5,STRG.14840.6	4	STRG.14840.1,STRG.14840.2,blat.proc3825154.chain_3359	3
scaffold_15	alt_donor	9856877	9856878	-	asmbl_14414,asmbl_14415,asmbl_14417	none	STRG.18501.1,STRG.18501.2,STRG.18501.3	3	STRG.18501.4	1
scaffold_12	alt_acceptor	4213866	4213867	+	asmbl_7591,asmbl_7593	none	STRG.14601.3,blat.proc3825170.chain_3169	2	STRG.14601.1,STRG.14601.2,blat.proc3825170.chain_3167	3
scaffold_5	skipped_exon	17191832	17194624	+	asmbl_46142	none	STRG.6891.2	1	STRG.6891.1	1
scaffold_8	starts_in_intron	4895611	4895611	+	asmbl_52879	none	blat.proc3825168.chain_2418	1	STRG.9956.1,STRG.9956.2,blat.proc3825168.chain_2415,blat.proc3825168.chain_2416,blat.proc3825168.chain_2417	5
scaffold_8	retained_intron	17839229	17839334	+	asmbl_53515	none	Trinity_GG_23208_c0_g1_i1,blat.proc3825168.chain_3143	2	STRG.10692.1,Trinity_GG_23208_c0_g1_i3,blat.proc3825168.chain_3144	3
scaffold_17	alt_acceptor	8318622	8318623	+	asmbl_18969	none	STRG.20456.3	1	STRG.20456.1,STRG.20456.2,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1202,blat.proc3825174.chain_1206	9
scaffold_7	retained_exon	268750	268818	+	asmbl_49542,asmbl_49543,asmbl_49544	none	STRG.8598.1,STRG.8598.3,STRG.8598.4	3	STRG.8598.6	1
scaffold_1	retained_intron	13537791	13537907	-	asmbl_823	none	Trinity_GG_496_c0_g2_i1,blat.proc3825148.chain_934	2	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_931,blat.proc3825148.chain_932,blat.proc3825148.chain_933	7
scaffold_15	spliced_intron	15416433	15416546	-	asmbl_14776	none	blat.proc3825158.chain_52	1	blat.proc3825158.chain_53,blat.proc3825158.chain_54	2
scaffold_2	alt_donor	8874134	8874135	+	asmbl_24654	none	STRG.2139.2,blat.proc3825164.chain_2331	2	STRG.2139.1,STRG.2139.3,STRG.2139.4,blat.proc3825164.chain_2328,blat.proc3825164.chain_2329,blat.proc3825164.chain_2330	6
scaffold_3	retained_exon	6042295	6043267	-	asmbl_38881,asmbl_38882,asmbl_38883	none	STRG.3259.4,STRG.3259.6,STRG.3259.7	3	STRG.3259.3	1
scaffold_8	skipped_exon	14569488	14571071	+	asmbl_53382	none	STRG.10543.2	1	STRG.10543.1,STRG.10543.3,blat.proc3825168.chain_3106	3
scaffold_19	starts_in_intron	3669379	3669379	-	asmbl_22120	none	blat.proc3825158.chain_2895	1	STRG.22046.1,STRG.22046.2,Trinity_GG_12309_c0_g1_i1,Trinity_GG_12309_c0_g1_i3,Trinity_GG_12309_c0_g1_i5,Trinity_GG_12309_c0_g1_i6,blat.proc3825158.chain_2893,blat.proc3825158.chain_2894,blat.proc3825158.chain_2897,blat.proc3825158.chain_2898,blat.proc3825158.chain_2899	11
scaffold_13	spliced_intron	12105019	12105196	+	asmbl_11331	none	STRG.16347.1,Trinity_GG_26304_c0_g1_i1,blat.proc3825172.chain_1152	3	STRG.16347.2	1
scaffold_2	retained_exon	14548889	14549008	+	asmbl_24954,asmbl_24960	none	STRG.2464.2,blat.proc3825164.chain_2653,blat.proc3825164.chain_2658	3	STRG.2464.1,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	7
scaffold_21	alt_acceptor	705967	705968	-	asmbl_27352	none	Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793	2	STRG.23759.1,Trinity_GG_13202_c0_g2_i1,blat.proc3825160.chain_796,blat.proc3825160.chain_799	4
scaffold_3	skipped_exon	6170797	6171815	-	asmbl_38901,asmbl_38904	none	STRG.3284.1,blat.proc3825148.chain_3074,blat.proc3825148.chain_3075	3	STRG.3284.2,STRG.3284.3,blat.proc3825148.chain_3076	3
scaffold_28	starts_in_intron	9669883	9669883	-	asmbl_38526	none	blat.proc3825162.chain_3106	1	Trinity_GG_16789_c0_g1_i1,blat.proc3825162.chain_3105	2
scaffold_2	alt_acceptor	15457510	15457511	-	asmbl_23626	none	STRG.2501.1,blat.proc3825148.chain_2433	2	STRG.2501.2	1
scaffold_11	retained_intron	17086528	17087549	-	asmbl_7245	none	Trinity_GG_8018_c0_g2_i1,Trinity_GG_8018_c1_g1_i1,blat.proc3825154.chain_2888	3	STRG.14373.3,STRG.14373.4,blat.proc3825154.chain_2885	3
scaffold_18	spliced_intron	5910191	5910450	+	asmbl_20619	none	STRG.21344.2,blat.proc3825174.chain_2322	2	Trinity_GG_29070_c0_g1_i3,blat.proc3825174.chain_2323	2
scaffold_7	starts_in_intron	12576064	12576064	-	asmbl_51247	none	STRG.9367.1,Trinity_GG_5260_c1_g1_i1,blat.proc3825152.chain_1725	3	STRG.9367.2	1
scaffold_19	starts_in_intron	8337782	8337782	+	asmbl_21514	none	STRG.22292.2	1	STRG.22292.1,blat.proc3825174.chain_3198	2
scaffold_4	retained_intron	6300650	6300748	+	asmbl_41394,asmbl_41395	none	blat.proc3825166.chain_919,blat.proc3825166.chain_921	2	STRG.4503.1,STRG.4503.2,Trinity_GG_19783_c0_g1_i1,Trinity_GG_19783_c0_g1_i3,blat.proc3825166.chain_920,blat.proc3825166.chain_922	6
scaffold_4	alt_acceptor	12629250	12629251	-	asmbl_42939	none	blat.proc3825150.chain_1040	1	STRG.4902.3	1
scaffold_5	spliced_intron	18249279	18249475	+	asmbl_46224	none	STRG.6960.2,blat.proc3825166.chain_3162	2	STRG.6960.1,STRG.6960.3,STRG.6960.4,Trinity_GG_21136_c0_g1_i2,blat.proc3825166.chain_3160,blat.proc3825166.chain_3161	6
scaffold_13	retained_intron	4459323	4459424	+	asmbl_10798	none	Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_512	2	STRG.15770.1,STRG.15770.2,STRG.15770.3,STRG.15770.4,blat.proc3825172.chain_509,blat.proc3825172.chain_510,blat.proc3825172.chain_511	7
scaffold_21	alternate_exon	257435	257725	-	asmbl_27283	none	STRG.23725.6	1	blat.proc3825160.chain_807	1
scaffold_22	starts_in_intron	4577470	4577470	+	asmbl_30031	none	blat.proc3825176.chain_2003	1	STRG.24887.2,STRG.24887.3,blat.proc3825176.chain_2004,blat.proc3825176.chain_2005	4
scaffold_13	starts_in_intron	8697897	8697897	+	asmbl_11142	none	blat.proc3825172.chain_934	1	STRG.16140.1,STRG.16140.2,blat.proc3825172.chain_936,blat.proc3825172.chain_937	4
scaffold_24	spliced_intron	9119810	9119908	+	asmbl_32506	none	Trinity_GG_32221_c0_g1_i8,blat.proc3825178.chain_170	2	Trinity_GG_32221_c0_g1_i2,Trinity_GG_32221_c0_g1_i9,blat.proc3825178.chain_171,blat.proc3825178.chain_174	4
scaffold_11	retained_exon	8478806	8478871	+	asmbl_5783	none	STRG.13864.1,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2291	3	STRG.13864.2,Trinity_GG_24888_c0_g1_i4,blat.proc3825170.chain_2292	3
scaffold_20	spliced_intron	11948625	11948717	-	asmbl_26206,asmbl_26208	none	STRG.23700.2,blat.proc3825160.chain_681	2	STRG.23700.3,blat.proc3825160.chain_680	2
scaffold_10	retained_intron	5856417	5857533	-	asmbl_4393	none	Trinity_GG_6938_c0_g1_i1,blat.proc3825154.chain_981	2	blat.proc3825154.chain_983	1
scaffold_7	alt_donor	31313	31314	+	asmbl_49535	none	STRG.8587.1	1	STRG.8587.2,blat.proc3825168.chain_1094	2
scaffold_7	skipped_exon	1224787	1225948	+	asmbl_49587	none	STRG.8636.1,blat.proc3825168.chain_1042	2	STRG.8636.2,blat.proc3825168.chain_1043	2
scaffold_18	spliced_intron	7867916	7867988	+	asmbl_20800,asmbl_20801,asmbl_20804	none	STRG.21488.2,STRG.21488.3,Trinity_GG_29146_c0_g1_i18,Trinity_GG_29146_c0_g1_i3,blat.proc3825174.chain_2452,blat.proc3825174.chain_2455,blat.proc3825174.chain_2458,blat.proc3825174.chain_2459	8	STRG.21488.1,STRG.21488.4,STRG.21488.5,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i11,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2450,blat.proc3825174.chain_2451,blat.proc3825174.chain_2453,blat.proc3825174.chain_2456,blat.proc3825174.chain_2460	13
scaffold_2	alt_acceptor	14537011	14537012	+	asmbl_24944,asmbl_24946	none	STRG.2455.2,STRG.2455.3,blat.proc3825164.chain_2723	3	STRG.2455.1,blat.proc3825164.chain_2722	2
scaffold_1	starts_in_intron	12978354	12978354	+	asmbl_2289	none	Trinity_GG_17845_c0_g1_i6,blat.proc3825164.chain_1043	2	STRG.935.1,blat.proc3825164.chain_1042,blat.proc3825164.chain_1044,blat.proc3825164.chain_1047	4
scaffold_25	starts_in_intron	5785528	5785528	+	asmbl_33579	none	Trinity_GG_32454_c0_g1_i2,blat.proc3825178.chain_582	2	STRG.27472.1,STRG.27472.2,STRG.27472.3,blat.proc3825178.chain_583,blat.proc3825178.chain_587	5
scaffold_25	retained_intron	4810572	4810690	+	asmbl_33534	none	blat.proc3825178.chain_526	1	STRG.27415.2,Trinity_GG_32429_c0_g1_i2,blat.proc3825178.chain_523	3
scaffold_22	ends_in_intron	10681482	10681482	-	asmbl_29618	none	STRG.25415.3	1	blat.proc3825160.chain_2610	1
scaffold_24	ends_in_intron	6083671	6083671	-	asmbl_32925	none	STRG.26666.3,blat.proc3825162.chain_55	2	STRG.26666.2	1
scaffold_4	alt_acceptor	1972705	1972706	-	asmbl_42384	none	blat.proc3825150.chain_424	1	blat.proc3825150.chain_423	1
scaffold_5	alternate_exon	990732	990858	+	asmbl_45107	none	STRG.5651.2,blat.proc3825166.chain_1831	2	STRG.5651.1,blat.proc3825166.chain_1830	2
scaffold_22	alternate_exon	10670130	10670934	-	asmbl_29613	none	STRG.25409.2,blat.proc3825160.chain_2566	2	STRG.25409.1	1
scaffold_10	ends_in_intron	11971450	11971450	+	asmbl_3511	none	blat.proc3825170.chain_1446	1	STRG.12838.2	1
scaffold_24	alt_donor	8747124	8747125	+	asmbl_32443	none	STRG.26888.3	1	STRG.26888.1,Trinity_GG_32167_c0_g1_i1,blat.proc3825178.chain_75	3
scaffold_21	alternate_exon	1758526	1759216	-	asmbl_27420	none	Trinity_GG_13284_c3_g1_i1,blat.proc3825160.chain_963,blat.proc3825160.chain_966	3	blat.proc3825160.chain_962	1
scaffold_14	alternate_exon	14140582	14149024	+	asmbl_12525,asmbl_12528	none	STRG.17687.1,STRG.17687.3	2	Trinity_GG_27000_c0_g1_i5,blat.proc3825172.chain_2358	2
scaffold_25	starts_in_intron	5813714	5813714	-	asmbl_34284	none	blat.proc3825162.chain_840	1	STRG.27473.1,blat.proc3825162.chain_839,blat.proc3825162.chain_841	3
scaffold_3	starts_in_intron	1758763	1758763	+	asmbl_39876	none	STRG.2993.2	1	STRG.2993.1,blat.proc3825164.chain_3236,blat.proc3825164.chain_3237,blat.proc3825164.chain_3238,blat.proc3825164.chain_3239,blat.proc3825164.chain_3240	6
scaffold_20	ends_in_intron	11546789	11546789	-	asmbl_26156	none	Trinity_GG_13177_c0_g1_i3,blat.proc3825160.chain_735	2	STRG.23661.1,blat.proc3825160.chain_737	2
scaffold_12	retained_intron	2662471	2662567	+	asmbl_7505	none	STRG.14507.1,blat.proc3825170.chain_3088	2	STRG.14507.3,blat.proc3825170.chain_3085	2
scaffold_11	alternate_exon	9149170	9149570	+	asmbl_5874	none	STRG.13954.1,blat.proc3825170.chain_2540	2	STRG.13954.3	1
scaffold_4	spliced_intron	3884999	3885621	-	asmbl_42462	none	STRG.4296.4	1	STRG.4296.1,STRG.4296.2,STRG.4296.3,Trinity_GG_2399_c1_g1_i1,blat.proc3825150.chain_530,blat.proc3825150.chain_531,blat.proc3825150.chain_532	7
scaffold_11	starts_in_intron	17180796	17180796	+	asmbl_6200	none	Trinity_GG_25246_c1_g1_i1,blat.proc3825170.chain_2929	2	STRG.14380.1,Trinity_GG_25246_c1_g2_i2,blat.proc3825170.chain_2931	3
scaffold_6	starts_in_intron	7516657	7516657	-	asmbl_48501	none	blat.proc3825152.chain_15	1	STRG.7655.4,blat.proc3825152.chain_11	2
scaffold_27	alternate_exon	934982	935128	-	asmbl_36719,asmbl_36721,asmbl_36722	none	STRG.28588.2,STRG.28588.3,STRG.28588.4,blat.proc3825162.chain_1834	4	STRG.28588.1,blat.proc3825162.chain_1833,blat.proc3825162.chain_1835	3
scaffold_6	starts_in_intron	5190334	5190334	+	asmbl_46920,asmbl_46929	none	STRG.7496.3,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550	3	STRG.7496.1,STRG.7496.2,blat.proc3825166.chain_3551,blat.proc3825166.chain_3554	4
scaffold_13	retained_intron	7109506	7110796	+	asmbl_11010,asmbl_11014	none	STRG.16010.1,Trinity_GG_26113_c0_g1_i5,Trinity_GG_26113_c0_g1_i9,blat.proc3825172.chain_778	4	STRG.16010.3,blat.proc3825172.chain_781	2
scaffold_397	starts_in_intron	1709	1709	-	asmbl_41078	none	Trinity_GG_17006_c0_g1_i1	1	STRG.30308.2	1
scaffold_6	alt_donor	187756	187757	+	asmbl_46637	none	STRG.7087.2	1	blat.proc3825166.chain_3308	1
scaffold_5	alternate_exon	5608188	5608889	+	asmbl_45353	none	blat.proc3825166.chain_2202	1	STRG.5985.1,blat.proc3825166.chain_2203	2
scaffold_23	alternate_exon	4100078	4104118	-	asmbl_30831	none	blat.proc3825160.chain_3031	1	blat.proc3825160.chain_3030	1
scaffold_13	alt_donor	3478917	3478918	+	asmbl_10694	none	STRG.15656.1,blat.proc3825172.chain_355	2	STRG.15656.2	1
scaffold_12	retained_intron	14123567	14123697	-	asmbl_8991	none	Trinity_GG_8555_c0_g1_i1,Trinity_GG_8555_c0_g1_i3,blat.proc3825156.chain_77	3	STRG.15244.1,STRG.15244.2,STRG.15244.3,blat.proc3825156.chain_75	4
scaffold_19	alt_acceptor	5637475	5637476	-	asmbl_22180	none	blat.proc3825158.chain_2948	1	blat.proc3825158.chain_2946,blat.proc3825158.chain_2947	2
scaffold_13	alternate_exon	2067078	2067118	+	asmbl_10577,asmbl_10579,asmbl_10580	none	STRG.15540.1,STRG.15540.2,Trinity_GG_25866_c0_g1_i1,blat.proc3825172.chain_306	4	STRG.15540.3,blat.proc3825172.chain_305	2
scaffold_1	alt_donor	13926178	13926179	-	asmbl_860,asmbl_861	none	STRG.1000.2,STRG.1000.3,blat.proc3825148.chain_1010	3	STRG.1000.1	1
scaffold_28	spliced_intron	56228	56300	-	asmbl_37881,asmbl_37885	none	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2400	3	blat.proc3825162.chain_2402	1
scaffold_16	starts_in_intron	1244750	1244750	-	asmbl_16937	none	blat.proc3825158.chain_223	1	STRG.19087.1,STRG.19087.2,STRG.19087.3,blat.proc3825158.chain_222,blat.proc3825158.chain_224,blat.proc3825158.chain_225	6
scaffold_2	starts_in_intron	3911167	3911167	-	asmbl_23021	none	blat.proc3825148.chain_1820	1	STRG.1830.1	1
scaffold_20	spliced_intron	1490355	1490426	+	asmbl_26416,asmbl_26418	none	STRG.22869.2,STRG.22869.3	2	STRG.22869.4,Trinity_GG_29893_c1_g1_i3,Trinity_GG_29893_c1_g1_i4,blat.proc3825176.chain_24,blat.proc3825176.chain_25,blat.proc3825176.chain_26	6
scaffold_2	starts_in_intron	17714634	17714634	-	asmbl_23744	none	STRG.2669.3	1	STRG.2669.1,STRG.2669.2,STRG.2669.4,blat.proc3825148.chain_2606,blat.proc3825148.chain_2607	5
scaffold_3	alternate_exon	16345792	16351003	-	asmbl_39499	none	STRG.3910.1,blat.proc3825150.chain_114	2	Trinity_GG_2173_c3_g1_i1,blat.proc3825150.chain_121	2
scaffold_15	alternate_exon	8039836	8042181	-	asmbl_14328	none	blat.proc3825156.chain_3226	1	STRG.18380.1,blat.proc3825156.chain_3224	2
scaffold_13	spliced_intron	7216203	7216365	+	asmbl_11019,asmbl_11021,asmbl_11026,asmbl_11027	none	STRG.16019.1,blat.proc3825172.chain_809,blat.proc3825172.chain_813,blat.proc3825172.chain_815,blat.proc3825172.chain_816	5	blat.proc3825172.chain_810,blat.proc3825172.chain_811,blat.proc3825172.chain_812,blat.proc3825172.chain_814	4
scaffold_22	alternate_exon	8016441	8016539	+	asmbl_30253	none	STRG.25156.1,blat.proc3825176.chain_2288	2	STRG.25156.2	1
scaffold_17	ends_in_intron	14630717	14630717	+	asmbl_19419	none	blat.proc3825174.chain_1756	1	STRG.20943.1,STRG.20943.2,STRG.20943.3,blat.proc3825174.chain_1755	4
scaffold_14	retained_exon	15346297	15346341	-	asmbl_13711	none	STRG.17765.1,Trinity_GG_9998_c0_g1_i4,blat.proc3825156.chain_2605	3	STRG.17765.3,Trinity_GG_9998_c0_g1_i7,blat.proc3825156.chain_2610	3
scaffold_28	alt_donor	3318136	3318137	+	asmbl_37471	none	STRG.29548.1,blat.proc3825178.chain_2655	2	STRG.29548.2,blat.proc3825178.chain_2656	2
scaffold_3	skipped_exon	8253370	8255934	+	asmbl_40207	none	STRG.3402.2	1	STRG.3402.1,Trinity_GG_19231_c0_g1_i2,blat.proc3825164.chain_3649	3
scaffold_8	starts_in_intron	4694785	4694785	+	asmbl_52850	none	Trinity_GG_22845_c0_g1_i1,blat.proc3825168.chain_2504	2	STRG.9929.1,STRG.9929.2,blat.proc3825168.chain_2505	3
scaffold_6	alternate_exon	17709796	17709869	+	asmbl_47780	none	STRG.8460.2	1	STRG.8460.1,Trinity_GG_21934_c0_g1_i1,blat.proc3825168.chain_872	3
scaffold_2	retained_intron	13330421	13330492	+	asmbl_24832,asmbl_24833	none	STRG.2344.1,STRG.2344.2,blat.proc3825164.chain_2554,blat.proc3825164.chain_2555	4	STRG.2344.3,STRG.2344.5,blat.proc3825164.chain_2553	3
scaffold_3	skipped_exon	11777605	11778736	-	asmbl_39188	none	STRG.3609.1,blat.proc3825148.chain_3483	2	STRG.3609.2	1
scaffold_26	starts_in_intron	4679586	4679586	-	asmbl_35584	none	STRG.28192.2	1	STRG.28192.1	1
scaffold_1	retained_intron	20687634	20687780	-	asmbl_1189	none	STRG.1410.2	1	STRG.1410.1	1
scaffold_26	retained_intron	6350865	6351295	-	asmbl_35681	none	STRG.28335.4,blat.proc3825162.chain_1569	2	STRG.28335.5	1
scaffold_4	alt_donor	10982399	10982400	+	asmbl_41696	none	STRG.4819.2	1	STRG.4819.1,blat.proc3825166.chain_1284	2
scaffold_19	spliced_intron	2917569	2917600	+	asmbl_21291	none	blat.proc3825174.chain_2943	1	STRG.21979.1	1
scaffold_5	retained_intron	16314540	16314719	+	asmbl_46085	none	blat.proc3825166.chain_3011	1	STRG.6829.1,blat.proc3825166.chain_3010,blat.proc3825166.chain_3012	3
scaffold_25	alternate_exon	666371	666409	+	asmbl_33349	none	STRG.27122.1	1	STRG.27122.2	1
scaffold_21	skipped_exon	6391077	6393407	+	asmbl_28632	none	STRG.24166.1,blat.proc3825176.chain_1282	2	blat.proc3825176.chain_1279,blat.proc3825176.chain_1280	2
scaffold_7	spliced_intron	8279661	8279764	+	asmbl_49980,asmbl_49982	none	STRG.9062.1,blat.proc3825168.chain_1489,blat.proc3825168.chain_1490	3	blat.proc3825168.chain_1492	1
scaffold_9	alt_acceptor	16569994	16569995	+	asmbl_54600	none	Trinity_GG_23904_c0_g1_i18,blat.proc3825170.chain_613	2	Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_614	2
scaffold_4	alt_acceptor	3883862	3883863	-	asmbl_42459,asmbl_42460,asmbl_42462	none	STRG.4296.1,STRG.4296.2,STRG.4296.4,blat.proc3825150.chain_530,blat.proc3825150.chain_531	5	STRG.4296.3	1
scaffold_17	alt_donor	5997592	5997593	+	asmbl_18835,asmbl_18836,asmbl_18837	none	STRG.20285.1,STRG.20285.2,blat.proc3825174.chain_1141	3	STRG.20285.4,STRG.20285.5	2
scaffold_8	spliced_intron	7985872	7986129	-	asmbl_51941,asmbl_51942,asmbl_51943	none	STRG.10098.1,Trinity_GG_5617_c0_g1_i2,Trinity_GG_5617_c0_g1_i4,Trinity_GG_5617_c0_g1_i6,blat.proc3825152.chain_2333,blat.proc3825152.chain_2335,blat.proc3825152.chain_2337	7	STRG.10098.2,blat.proc3825152.chain_2334	2
scaffold_22	spliced_intron	9911206	9911454	-	asmbl_29572	none	Trinity_GG_14183_c0_g1_i2,blat.proc3825160.chain_2500	2	STRG.25331.1,blat.proc3825160.chain_2501	2
scaffold_21	alt_acceptor	8283335	8283336	-	asmbl_27914	none	blat.proc3825160.chain_1531	1	STRG.24367.1,STRG.24367.2,blat.proc3825160.chain_1532	3
scaffold_11	alt_donor	1433331	1433332	-	asmbl_6431	none	STRG.13328.1,STRG.13328.2,blat.proc3825154.chain_1912	3	STRG.13328.3	1
scaffold_2	alt_acceptor	15656428	15656429	-	asmbl_23649	none	STRG.2520.1	1	STRG.2520.2,blat.proc3825148.chain_2472	2
scaffold_4	skipped_exon	6947237	6947567	+	asmbl_41434,asmbl_41435	none	STRG.4536.2,blat.proc3825166.chain_914	2	STRG.4536.1,STRG.4536.3,blat.proc3825166.chain_915,blat.proc3825166.chain_917	4
scaffold_23	starts_in_intron	5843859	5843859	-	asmbl_30945	none	blat.proc3825160.chain_3130	1	STRG.25954.1,blat.proc3825160.chain_3129	2
scaffold_11	alt_acceptor	16613178	16613179	-	asmbl_7231	none	STRG.14347.1,blat.proc3825154.chain_2797	2	STRG.14347.2,blat.proc3825154.chain_2796	2
scaffold_21	retained_exon	11272769	11272852	-	asmbl_28113,asmbl_28114,asmbl_28115,asmbl_28116	none	STRG.24607.1,STRG.24607.2,blat.proc3825160.chain_1823,blat.proc3825160.chain_1827,blat.proc3825160.chain_1829	5	blat.proc3825160.chain_1824,blat.proc3825160.chain_1825	2
scaffold_17	alt_acceptor	7076527	7076528	+	asmbl_18892	none	STRG.20378.1,blat.proc3825174.chain_1183	2	STRG.20378.2	1
scaffold_9	alt_acceptor	16558842	16558843	-	asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55590,asmbl_55591	none	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7	STRG.11806.4,STRG.11806.5,Trinity_GG_6524_c0_g2_i1,blat.proc3825154.chain_276	4
scaffold_21	alternate_exon	8135342	8139076	-	asmbl_27892,asmbl_27894,asmbl_27895	none	blat.proc3825160.chain_1509,blat.proc3825160.chain_1511,blat.proc3825160.chain_1512	3	STRG.24349.5,blat.proc3825160.chain_1508	2
scaffold_15	retained_intron	4964556	4964665	+	asmbl_15182	none	STRG.18207.4	1	STRG.18207.2,STRG.18207.3,blat.proc3825172.chain_2889,blat.proc3825172.chain_2891	4
scaffold_1	alt_donor	6661723	6661724	+	asmbl_1842	none	STRG.456.2	1	STRG.456.1,blat.proc3825164.chain_587	2
scaffold_10	retained_intron	3062983	3063389	-	asmbl_4153	none	STRG.12127.1,Trinity_GG_6721_c0_g1_i2,blat.proc3825154.chain_626	3	STRG.12127.2,blat.proc3825154.chain_627	2
scaffold_14	retained_exon	2298111	2298222	+	asmbl_11856,asmbl_11857,asmbl_11858	none	STRG.16845.1,STRG.16845.2,blat.proc3825172.chain_1545	3	STRG.16845.3	1
scaffold_7	retained_intron	4930321	4930697	+	asmbl_49774,asmbl_49778	none	blat.proc3825168.chain_1344,blat.proc3825168.chain_1346	2	STRG.8852.1,STRG.8852.2,STRG.8852.3,blat.proc3825168.chain_1345,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1352	7
scaffold_4	alt_acceptor	12531836	12531837	-	asmbl_42918	none	STRG.4888.2	1	STRG.4888.1,Trinity_GG_2721_c0_g1_i3,blat.proc3825150.chain_1068	3
scaffold_14	spliced_intron	2373729	2374187	-	asmbl_12937,asmbl_12939,asmbl_12940,asmbl_12941	none	STRG.16854.1,STRG.16854.2,STRG.16854.3,STRG.16854.4	4	STRG.16854.5,STRG.16854.6,STRG.16854.7,Trinity_GG_9462_c0_g1_i7,Trinity_GG_9462_c0_g1_i8	5
scaffold_1	alt_donor	5996903	5996904	-	asmbl_313	none	blat.proc3825148.chain_402	1	STRG.404.3,blat.proc3825148.chain_400	2
scaffold_3	alt_acceptor	19805362	19805363	+	asmbl_40775	none	STRG.4097.4	1	STRG.4097.1,STRG.4097.2,STRG.4097.3,blat.proc3825166.chain_568,blat.proc3825166.chain_569	5
scaffold_9	spliced_intron	9656350	9656875	+	asmbl_54218,asmbl_54220	none	STRG.11344.1,blat.proc3825170.chain_155,blat.proc3825170.chain_158	3	blat.proc3825170.chain_160,blat.proc3825170.chain_163	2
scaffold_3	alternate_exon	17145692	17145777	+	asmbl_40656	none	STRG.3958.1,blat.proc3825166.chain_460	2	STRG.3958.3,blat.proc3825166.chain_458	2
scaffold_6	retained_intron	12991556	12992335	-	asmbl_48858	none	STRG.8068.2,blat.proc3825152.chain_495	2	STRG.8068.1,blat.proc3825152.chain_492	2
scaffold_23	retained_intron	5709650	5709748	-	asmbl_30937	none	Trinity_GG_14531_c0_g1_i2,blat.proc3825160.chain_3132	2	STRG.25941.1	1
scaffold_17	starts_in_intron	2634311	2634311	+	asmbl_18671	none	Trinity_GG_28292_c0_g1_i4,blat.proc3825174.chain_927	2	STRG.20060.4,blat.proc3825174.chain_928	2
scaffold_6	alternate_exon	10139384	10139434	-	asmbl_48656	none	STRG.7845.3	1	STRG.7845.1,STRG.7845.2,Trinity_GG_4435_c1_g1_i1,blat.proc3825152.chain_225,blat.proc3825152.chain_226	5
scaffold_13	alt_donor	2480231	2480232	-	asmbl_9461	none	STRG.15554.1,blat.proc3825156.chain_443	2	STRG.15554.2,blat.proc3825156.chain_445	2
scaffold_28	ends_in_intron	2267464	2267464	-	asmbl_38031	none	blat.proc3825162.chain_2580	1	STRG.29401.1,STRG.29401.2,STRG.29401.3,blat.proc3825162.chain_2575,blat.proc3825162.chain_2576,blat.proc3825162.chain_2577,blat.proc3825162.chain_2578,blat.proc3825162.chain_2579	8
scaffold_2	retained_exon	18951171	18951207	+	asmbl_25252,asmbl_25254	none	STRG.2769.2,STRG.2769.3,blat.proc3825164.chain_2976	3	STRG.2769.1,blat.proc3825164.chain_2977	2
scaffold_11	alt_acceptor	7924528	7924529	+	asmbl_5699	none	STRG.13804.3	1	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3
scaffold_5	alt_donor	14042289	14042290	-	asmbl_44588	none	STRG.6619.2,blat.proc3825150.chain_2836	2	STRG.6619.1,blat.proc3825150.chain_2835	2
scaffold_9	alt_donor	12453992	12453993	+	asmbl_54434	none	STRG.11562.1,blat.proc3825170.chain_392	2	STRG.11562.2,blat.proc3825170.chain_391	2
scaffold_17	ends_in_intron	8042582	8042582	-	asmbl_18072	none	Trinity_GG_11504_c0_g1_i3,blat.proc3825158.chain_1490	2	STRG.20425.1,STRG.20425.2,blat.proc3825158.chain_1489,blat.proc3825158.chain_1491	4
scaffold_21	starts_in_intron	702814	702814	-	asmbl_27347	none	STRG.23762.2,Trinity_GG_13243_c0_g1_i3,blat.proc3825160.chain_894	3	STRG.23762.1,Trinity_GG_13243_c0_g1_i1,Trinity_GG_13243_c0_g1_i2,blat.proc3825160.chain_893,blat.proc3825160.chain_895	5
scaffold_2	ends_in_intron	6765798	6765798	+	asmbl_24497,asmbl_24498	none	Trinity_GG_18452_c0_g1_i2,Trinity_GG_18452_c0_g1_i9,blat.proc3825164.chain_2146,blat.proc3825164.chain_2149	4	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2147,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	11
scaffold_3	alt_acceptor	13831839	13831840	-	asmbl_39307	none	STRG.3724.1	1	blat.proc3825148.chain_3569	1
scaffold_11	alt_donor	4688729	4688730	-	asmbl_6609,asmbl_6610	none	STRG.13564.1,STRG.13564.2,blat.proc3825154.chain_2144,blat.proc3825154.chain_2147	4	STRG.13564.4,STRG.13564.5	2
scaffold_22	alternate_exon	1706325	1706362	-	asmbl_29150	none	blat.proc3825160.chain_1960	1	STRG.24761.1,STRG.24761.2,Trinity_GG_13841_c0_g1_i1,Trinity_GG_13841_c0_g1_i3,blat.proc3825160.chain_1958,blat.proc3825160.chain_1959	6
scaffold_3	alt_acceptor	9582337	9582338	-	asmbl_39056	none	STRG.3434.2	1	STRG.3434.1,blat.proc3825148.chain_3307	2
scaffold_8	starts_in_intron	9110044	9110044	+	asmbl_53052	none	Trinity_GG_22950_c0_g1_i3,blat.proc3825168.chain_2708	2	STRG.10166.1,Trinity_GG_22950_c0_g1_i1,blat.proc3825168.chain_2709	3
scaffold_1	spliced_intron	22133297	22134524	+	asmbl_2684	none	STRG.1487.1	1	STRG.1487.3,Trinity_GG_18164_c1_g1_i1,blat.proc3825164.chain_1616	3
scaffold_10	retained_intron	13471381	13471638	-	asmbl_4884,asmbl_4889	none	STRG.12943.1,Trinity_GG_7233_c0_g2_i3,blat.proc3825154.chain_1534,blat.proc3825154.chain_1535	4	STRG.12943.2,STRG.12943.3,STRG.12943.4,blat.proc3825154.chain_1532,blat.proc3825154.chain_1533	5
scaffold_4	alternate_exon	4414503	4414536	+	asmbl_41260	none	blat.proc3825166.chain_844	1	STRG.4349.1,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_851,blat.proc3825166.chain_853	5
scaffold_7	spliced_intron	4915842	4915925	+	asmbl_49761	none	STRG.8836.2	1	STRG.8836.1,STRG.8836.3,blat.proc3825168.chain_1316	3
scaffold_20	alt_acceptor	1624139	1624140	-	asmbl_25594	none	STRG.22899.2	1	STRG.22899.1,STRG.22899.3	2
scaffold_16	alternate_exon	5515034	5515132	-	asmbl_17119	none	STRG.19312.2,blat.proc3825158.chain_361	2	STRG.19312.1,blat.proc3825158.chain_362	2
scaffold_28	alt_acceptor	753817	753818	-	asmbl_37931,asmbl_37935	none	STRG.29291.1,blat.proc3825162.chain_2383,blat.proc3825162.chain_2384	3	STRG.29291.2,STRG.29291.3,STRG.29291.4,blat.proc3825162.chain_2381,blat.proc3825162.chain_2382	5
scaffold_17	retained_intron	8731691	8732397	+	asmbl_19020	none	STRG.20488.1,blat.proc3825174.chain_1293	2	STRG.20488.2,blat.proc3825174.chain_1292	2
scaffold_3	alternate_exon	15575390	15575685	+	asmbl_40568,asmbl_40569,asmbl_40570	none	STRG.3847.1,blat.proc3825166.chain_327,blat.proc3825166.chain_328,blat.proc3825166.chain_329	4	STRG.3847.3,STRG.3847.4,blat.proc3825166.chain_330	3
scaffold_21	retained_intron	7286601	7286692	-	asmbl_27791	none	STRG.24249.2	1	STRG.24249.1,STRG.24249.3,Trinity_GG_13530_c0_g1_i1,Trinity_GG_13530_c0_g1_i2,blat.proc3825160.chain_1388,blat.proc3825160.chain_1389	6
scaffold_14	spliced_intron	7215130	7215744	+	asmbl_12134,asmbl_12135	none	STRG.17156.1,Trinity_GG_26721_c0_g1_i3,blat.proc3825172.chain_1868,blat.proc3825172.chain_1870	4	blat.proc3825172.chain_1869,blat.proc3825172.chain_1871	2
scaffold_13	retained_intron	4602805	4604926	-	asmbl_9639	none	STRG.15796.3,Trinity_GG_8874_c0_g1_i1,blat.proc3825156.chain_667	3	STRG.15796.1,Trinity_GG_8874_c0_g1_i5,blat.proc3825156.chain_665,blat.proc3825156.chain_666,blat.proc3825156.chain_670	5
scaffold_24	retained_intron	1452917	1452990	+	asmbl_32078	none	STRG.26401.2,Trinity_GG_31891_c1_g1_i2,blat.proc3825176.chain_3350	3	STRG.26401.3,Trinity_GG_31891_c1_g1_i1,blat.proc3825176.chain_3349	3
scaffold_14	retained_intron	15565919	15565945	+	asmbl_12622,asmbl_12624	none	STRG.17796.1,STRG.17796.2	2	STRG.17796.3	1
scaffold_28	skipped_exon	7237911	7238320	+	asmbl_37647	none	Trinity_GG_33802_c0_g1_i2,blat.proc3825178.chain_2924	2	STRG.29786.1,blat.proc3825178.chain_2923	2
scaffold_10	starts_in_intron	11598072	11598072	+	asmbl_3474	none	STRG.12815.4,Trinity_GG_24375_c1_g1_i1,blat.proc3825170.chain_1408	3	STRG.12815.1,STRG.12815.2,STRG.12815.3	3
scaffold_22	spliced_intron	4241052	4241193	-	asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29215,asmbl_29220	none	STRG.24845.1,STRG.24845.2,STRG.24845.3,Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065,blat.proc3825160.chain_2066,blat.proc3825160.chain_2068	7	blat.proc3825160.chain_2067	1
scaffold_24	retained_intron	1035334	1035594	+	asmbl_32062	none	blat.proc3825176.chain_3371	1	STRG.26378.1,blat.proc3825176.chain_3370	2
scaffold_5	retained_exon	16646474	16646497	+	asmbl_46113	none	STRG.6855.2,blat.proc3825166.chain_3027	2	STRG.6855.1,blat.proc3825166.chain_3029	2
scaffold_9	alt_acceptor	2799124	2799125	+	asmbl_53859,asmbl_53860,asmbl_53861	none	STRG.10918.1,STRG.10918.5,STRG.10918.6,Trinity_GG_23372_c0_g1_i7,Trinity_GG_23372_c0_g1_i8,blat.proc3825168.chain_3427,blat.proc3825168.chain_3429,blat.proc3825168.chain_3430,blat.proc3825168.chain_3433	9	STRG.10918.2,STRG.10918.4,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3431	4
scaffold_20	ends_in_intron	3540165	3540165	-	asmbl_25703	none	blat.proc3825160.chain_145	1	STRG.23067.1,blat.proc3825160.chain_146	2
scaffold_8	retained_intron	16040457	16040586	-	asmbl_52353	none	STRG.10585.3	1	STRG.10585.1,blat.proc3825152.chain_2823	2
scaffold_13	spliced_intron	6615541	6615731	+	asmbl_10952,asmbl_10953	none	STRG.15957.1,blat.proc3825172.chain_681,blat.proc3825172.chain_682	3	blat.proc3825172.chain_683	1
scaffold_5	starts_in_intron	10653591	10653591	+	asmbl_45690	none	Trinity_GG_20776_c0_g1_i2,blat.proc3825166.chain_2561	2	STRG.6347.1,blat.proc3825166.chain_2562	2
scaffold_17	alt_donor	6959745	6959746	-	asmbl_18011	none	STRG.20355.2,blat.proc3825158.chain_1400	2	STRG.20355.1,blat.proc3825158.chain_1399	2
scaffold_16	retained_intron	9145719	9145955	+	asmbl_16460,asmbl_16464	none	STRG.19514.2,blat.proc3825174.chain_438	2	STRG.19514.1,blat.proc3825174.chain_435,blat.proc3825174.chain_436,blat.proc3825174.chain_437	4
scaffold_17	retained_intron	13467626	13467758	-	asmbl_18369	none	STRG.20824.2,blat.proc3825158.chain_1771	2	STRG.20824.1,blat.proc3825158.chain_1770	2
scaffold_2	alt_acceptor	6633153	6633154	-	asmbl_23212,asmbl_23215,asmbl_23216,asmbl_23217,asmbl_23218	none	STRG.2030.1,Trinity_GG_1127_c0_g1_i1,blat.proc3825148.chain_2032,blat.proc3825148.chain_2033,blat.proc3825148.chain_2034,blat.proc3825148.chain_2035,blat.proc3825148.chain_2037	7	STRG.2030.2,STRG.2030.3	2
scaffold_20	skipped_exon	2290860	2292024	+	asmbl_26481	none	STRG.22968.2	1	STRG.22968.1,blat.proc3825176.chain_165	2
scaffold_3	alt_acceptor	6040384	6040385	-	asmbl_38879,asmbl_38880,asmbl_38882,asmbl_38883	none	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.6	4	STRG.3259.7	1
scaffold_5	ends_in_intron	4855949	4855949	-	asmbl_44020	none	blat.proc3825150.chain_2145	1	STRG.5945.1,STRG.5945.2,blat.proc3825150.chain_2144,blat.proc3825150.chain_2146,blat.proc3825150.chain_2147	5
scaffold_5	retained_exon	5738079	5738649	+	asmbl_45361	none	STRG.5992.4,blat.proc3825166.chain_2131	2	STRG.5992.3,blat.proc3825166.chain_2133	2
scaffold_2	retained_exon	7469728	7470198	-	asmbl_23261,asmbl_23265,asmbl_23266	none	STRG.2074.3,blat.proc3825148.chain_2063,blat.proc3825148.chain_2064	3	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2
scaffold_13	retained_intron	12104495	12104907	+	asmbl_11332	none	STRG.16347.2,Trinity_GG_26304_c0_g1_i4,blat.proc3825172.chain_1149	3	STRG.16347.1,Trinity_GG_26304_c0_g1_i1,Trinity_GG_26304_c0_g1_i2,blat.proc3825172.chain_1150,blat.proc3825172.chain_1152	5
scaffold_18	retained_exon	1893644	1893652	-	asmbl_19655,asmbl_19658,asmbl_19660,asmbl_19661,asmbl_19662,asmbl_19665	none	blat.proc3825158.chain_2010,blat.proc3825158.chain_2011,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	8	STRG.21081.3,STRG.21081.7,STRG.21081.8	3
scaffold_19	alt_acceptor	6677712	6677713	-	asmbl_22219,asmbl_22221	none	STRG.22184.1,blat.proc3825158.chain_2916,blat.proc3825158.chain_2917	3	STRG.22184.2	1
scaffold_23	starts_in_intron	7940184	7940184	-	asmbl_31064	none	STRG.26099.1	1	STRG.26099.2,STRG.26099.3,blat.proc3825160.chain_3216	3
scaffold_14	retained_intron	3588641	3588784	+	asmbl_11952,asmbl_11953	none	STRG.16942.2,STRG.16942.4,blat.proc3825172.chain_1711	3	STRG.16942.1,blat.proc3825172.chain_1710	2
scaffold_5	spliced_intron	14763416	14763651	-	asmbl_44620	none	blat.proc3825150.chain_2848	1	STRG.6677.3,Trinity_GG_3741_c0_g1_i2,blat.proc3825150.chain_2849	3
scaffold_14	ends_in_intron	2388910	2388910	-	asmbl_12950	none	blat.proc3825156.chain_1665	1	STRG.16855.2,STRG.16855.3	2
scaffold_3	alt_acceptor	16347312	16347313	-	asmbl_39497	none	STRG.3910.3,Trinity_GG_2173_c1_g1_i2,Trinity_GG_2173_c2_g1_i2,blat.proc3825150.chain_119,blat.proc3825150.chain_120	5	STRG.3910.1,blat.proc3825150.chain_114,blat.proc3825150.chain_115	3
scaffold_14	alt_acceptor	11760883	11760884	-	asmbl_13529,asmbl_13530	none	STRG.17520.1,STRG.17520.2,blat.proc3825156.chain_2320,blat.proc3825156.chain_2321	4	STRG.17520.3,blat.proc3825156.chain_2319	2
scaffold_24	alternate_exon	5950912	5951919	+	asmbl_32261,asmbl_32262,asmbl_32268,asmbl_32269,asmbl_32274	none	blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3675,blat.proc3825176.chain_3680	5	blat.proc3825176.chain_3679	1
scaffold_18	retained_intron	7864869	7866281	-	asmbl_19983	none	blat.proc3825158.chain_2407	1	STRG.21486.2,blat.proc3825158.chain_2405	2
scaffold_2	retained_intron	8055011	8055080	-	asmbl_23307	none	blat.proc3825148.chain_2120	1	STRG.2094.1,STRG.2094.2,STRG.2094.3,STRG.2094.4,blat.proc3825148.chain_2117,blat.proc3825148.chain_2118,blat.proc3825148.chain_2119,blat.proc3825148.chain_2121	8
scaffold_9	starts_in_intron	8944099	8944099	-	asmbl_55146	none	STRG.11280.2	1	STRG.11280.1,blat.proc3825152.chain_3426,blat.proc3825152.chain_3427,blat.proc3825152.chain_3428	4
scaffold_21	spliced_intron	730780	730999	+	asmbl_28291	none	STRG.23764.5	1	STRG.23764.3	1
scaffold_15	retained_intron	15907550	15907932	-	asmbl_14810,asmbl_14811,asmbl_14814	none	blat.proc3825158.chain_61,blat.proc3825158.chain_63,blat.proc3825158.chain_67	3	STRG.18975.1,STRG.18975.2,blat.proc3825158.chain_64,blat.proc3825158.chain_65,blat.proc3825158.chain_66	5
scaffold_1	retained_intron	5706882	5706999	+	asmbl_1756	none	blat.proc3825164.chain_500	1	STRG.372.1,blat.proc3825164.chain_496,blat.proc3825164.chain_497,blat.proc3825164.chain_498	4
scaffold_22	retained_intron	223722	223962	-	asmbl_29074,asmbl_29075,asmbl_29077,asmbl_29078,asmbl_29080,asmbl_29081,asmbl_29082	none	STRG.24683.1,STRG.24683.2,STRG.24683.3,STRG.24683.5,blat.proc3825160.chain_1903,blat.proc3825160.chain_1904,blat.proc3825160.chain_1905,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	9	STRG.24683.4	1
scaffold_21	alt_acceptor	706527	706528	-	asmbl_27350	none	STRG.23759.1,Trinity_GG_13202_c0_g2_i1,blat.proc3825160.chain_796,blat.proc3825160.chain_799	4	Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793	2
scaffold_10	retained_intron	3426012	3426415	+	asmbl_3045	none	Trinity_GG_24037_c0_g1_i2,blat.proc3825170.chain_837	2	STRG.12174.1,blat.proc3825170.chain_835	2
scaffold_4	starts_in_intron	16659266	16659266	+	asmbl_41995	none	blat.proc3825166.chain_1604	1	STRG.5252.2,blat.proc3825166.chain_1602	2
scaffold_1	alt_acceptor	13882872	13882873	-	asmbl_854,asmbl_856	none	STRG.996.4,blat.proc3825148.chain_1003	2	STRG.996.1,STRG.996.2,STRG.996.3,blat.proc3825148.chain_1004,blat.proc3825148.chain_1005,blat.proc3825148.chain_1006	6
scaffold_9	alt_donor	10271843	10271844	+	asmbl_54280	none	STRG.11372.1,blat.proc3825170.chain_111	2	STRG.11372.2	1
scaffold_3	ends_in_intron	11504574	11504574	+	asmbl_40354	none	blat.proc3825166.chain_105	1	STRG.3587.1,Trinity_GG_19340_c0_g1_i2,blat.proc3825166.chain_103,blat.proc3825166.chain_106	4
scaffold_10	starts_in_intron	8895317	8895317	-	asmbl_4630	none	blat.proc3825154.chain_1263	1	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1274	11
scaffold_15	alternate_exon	2423793	2423929	-	asmbl_13999	none	Trinity_GG_10120_c1_g1_i2,blat.proc3825156.chain_2823	2	Trinity_GG_10120_c1_g1_i1,blat.proc3825156.chain_2822	2
scaffold_3	spliced_intron	18947965	18948081	+	asmbl_40754	none	STRG.4065.1,blat.proc3825166.chain_536	2	blat.proc3825166.chain_535	1
scaffold_3	alt_acceptor	5003813	5003814	+	asmbl_40056	none	STRG.3206.1	1	STRG.3206.2	1
scaffold_11	alternate_exon	8897108	8897254	-	asmbl_6885	none	blat.proc3825154.chain_2427	1	STRG.13911.1	1
scaffold_18	starts_in_intron	815388	815388	+	asmbl_20325	none	blat.proc3825174.chain_1949	1	STRG.21006.1,STRG.21006.2,blat.proc3825174.chain_1945,blat.proc3825174.chain_1947,blat.proc3825174.chain_1948,blat.proc3825174.chain_1950	6
scaffold_19	alt_acceptor	12200143	12200144	-	asmbl_22467	none	STRG.22549.2	1	STRG.22549.1,Trinity_GG_12531_c0_g1_i2	2
scaffold_5	retained_exon	5738076	5738649	+	asmbl_45363	none	STRG.5992.6	1	STRG.5992.3,blat.proc3825166.chain_2133	2
scaffold_20	alt_acceptor	2389446	2389447	-	asmbl_25641	none	STRG.22971.2,blat.proc3825160.chain_61	2	STRG.22971.3	1
scaffold_6	alternate_exon	12971541	12971585	+	asmbl_47462	none	blat.proc3825168.chain_536	1	STRG.8057.1,STRG.8057.2,STRG.8057.3,blat.proc3825168.chain_537,blat.proc3825168.chain_538,blat.proc3825168.chain_539	6
scaffold_25	alternate_exon	641719	643664	+	asmbl_33344	none	STRG.27113.2	1	STRG.27113.1,Trinity_GG_32290_c1_g1_i1,blat.proc3825178.chain_301	3
scaffold_20	alternate_exon	1008285	1008373	+	asmbl_26400	none	STRG.22805.3	1	STRG.22805.2	1
scaffold_20	skipped_exon	628851	631334	-	asmbl_25502	none	STRG.22765.2,blat.proc3825158.chain_3608	2	STRG.22765.1,STRG.22765.3,blat.proc3825158.chain_3609,blat.proc3825158.chain_3610	4
scaffold_27	alt_acceptor	4380753	4380754	+	asmbl_36279	none	STRG.28897.2,blat.proc3825178.chain_2086	2	blat.proc3825178.chain_2085	1
scaffold_28	alt_acceptor	232184	232185	+	asmbl_37255,asmbl_37256,asmbl_37257,asmbl_37259	none	STRG.29253.1,blat.proc3825178.chain_2480,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483,blat.proc3825178.chain_2485	5	STRG.29253.2	1
scaffold_7	skipped_exon	5928121	5929865	+	asmbl_49827	none	STRG.8902.2,Trinity_GG_22209_c0_g1_i4,blat.proc3825168.chain_1376	3	STRG.8902.3,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1375	3
scaffold_3	retained_intron	10304998	10305546	+	asmbl_40261	none	STRG.3476.2,Trinity_GG_19250_c1_g1_i2,Trinity_GG_19250_c3_g1_i1,blat.proc3825164.chain_3699,blat.proc3825164.chain_3704	5	STRG.3476.1,Trinity_GG_19250_c1_g1_i1,Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700,blat.proc3825164.chain_3702	5
scaffold_24	alt_acceptor	7737497	7737498	-	asmbl_33057	none	STRG.26823.1,Trinity_GG_15017_c0_g1_i1,blat.proc3825162.chain_202	3	Trinity_GG_15017_c0_g1_i2,blat.proc3825162.chain_201	2
scaffold_9	alt_acceptor	8396248	8396249	+	asmbl_54166,asmbl_54167,asmbl_54171,asmbl_54172,asmbl_54173	none	STRG.11261.1,STRG.11261.2,STRG.11261.3,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_62	6	blat.proc3825170.chain_59	1
scaffold_3	starts_in_intron	17345176	17345176	+	asmbl_40669	none	blat.proc3825166.chain_471	1	STRG.3963.1,blat.proc3825166.chain_470	2
scaffold_24	retained_intron	6432023	6432210	-	asmbl_32957	none	STRG.26697.2,blat.proc3825160.chain_3740	2	STRG.26697.1,blat.proc3825160.chain_3741,blat.proc3825160.chain_3742	3
scaffold_21	retained_exon	8973582	8973638	-	asmbl_27946,asmbl_27947	none	STRG.24409.1,STRG.24409.3,blat.proc3825160.chain_1566,blat.proc3825160.chain_1569	4	STRG.24409.2,blat.proc3825160.chain_1567,blat.proc3825160.chain_1568	3
scaffold_9	retained_intron	9470104	9470201	-	asmbl_55182,asmbl_55185	none	STRG.11310.2,blat.proc3825152.chain_3571	2	STRG.11310.1,STRG.11310.3,blat.proc3825152.chain_3566,blat.proc3825152.chain_3567,blat.proc3825152.chain_3570	5
scaffold_11	retained_exon	9123255	9123278	+	asmbl_5868,asmbl_5870	none	STRG.13952.1,blat.proc3825170.chain_2529,blat.proc3825170.chain_2532	3	STRG.13952.2,blat.proc3825170.chain_2530	2
scaffold_4	retained_intron	19379217	19379340	+	asmbl_42137	none	STRG.5525.1,blat.proc3825166.chain_1814	2	Trinity_GG_20347_c0_g1_i4,blat.proc3825166.chain_1813	2
scaffold_15	alternate_exon	1688913	1690166	+	asmbl_15028	none	STRG.17978.1,Trinity_GG_27194_c0_g1_i2,blat.proc3825172.chain_2688,blat.proc3825172.chain_2690	4	STRG.17978.2	1
scaffold_1	retained_intron	175417	175492	-	asmbl_13	none	Trinity_GG_12_c0_g1_i1,blat.proc3825148.chain_27	2	STRG.16.1,STRG.16.2,Trinity_GG_12_c0_g1_i4,Trinity_GG_12_c0_g1_i5,blat.proc3825148.chain_23,blat.proc3825148.chain_24,blat.proc3825148.chain_25,blat.proc3825148.chain_26	8
scaffold_28	alt_donor	4240015	4240016	+	asmbl_37528	none	STRG.29613.1	1	STRG.29613.2	1
scaffold_19	alternate_exon	12971777	12972586	-	asmbl_22575	none	Trinity_GG_12569_c0_g1_i6,blat.proc3825158.chain_3364	2	Trinity_GG_12569_c0_g1_i1,blat.proc3825158.chain_3362	2
scaffold_14	spliced_intron	2263195	2263335	-	asmbl_12929	none	STRG.16838.1,blat.proc3825156.chain_1656	2	blat.proc3825156.chain_1657	1
scaffold_3	retained_intron	13462730	13462851	+	asmbl_40441,asmbl_40442	none	blat.proc3825166.chain_149,blat.proc3825166.chain_150	2	STRG.3697.1,blat.proc3825166.chain_151	2
scaffold_7	alt_acceptor	18619279	18619280	-	asmbl_51484,asmbl_51489,asmbl_51490	none	STRG.9681.2,STRG.9681.4,blat.proc3825152.chain_2028	3	STRG.9681.1,STRG.9681.5,blat.proc3825152.chain_2027,blat.proc3825152.chain_2029	4
scaffold_13	spliced_intron	16460089	16460350	-	asmbl_10304,asmbl_10305	none	STRG.16703.4,blat.proc3825156.chain_1485	2	STRG.16703.2,blat.proc3825156.chain_1486	2
scaffold_7	starts_in_intron	17810257	17810257	+	asmbl_50502	none	blat.proc3825168.chain_2132	1	STRG.9628.1,blat.proc3825168.chain_2133,blat.proc3825168.chain_2134,blat.proc3825168.chain_2135,blat.proc3825168.chain_2136	5
scaffold_16	spliced_intron	14553177	14553355	+	asmbl_16685,asmbl_16686,asmbl_16688,asmbl_16689,asmbl_16690	none	STRG.19851.1,STRG.19851.2,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i3,Trinity_GG_28180_c0_g1_i4,Trinity_GG_28180_c0_g1_i6,blat.proc3825174.chain_729,blat.proc3825174.chain_730,blat.proc3825174.chain_732,blat.proc3825174.chain_733	10	STRG.19851.3,Trinity_GG_28180_c0_g1_i1,blat.proc3825174.chain_731	3
scaffold_20	alt_acceptor	1439311	1439312	-	asmbl_25565	none	STRG.22863.2	1	STRG.22863.1	1
scaffold_19	skipped_exon	5372937	5373632	+	asmbl_21370	none	STRG.22100.2	1	STRG.22100.1,blat.proc3825174.chain_3118	2
scaffold_3	retained_exon	5951166	5951453	-	asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38882	none	STRG.3259.1,STRG.3259.3,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3165	5	STRG.3259.4,STRG.3259.5,blat.proc3825148.chain_3162	3
scaffold_21	alt_donor	33515	33516	-	asmbl_27267	none	STRG.23713.2,blat.proc3825160.chain_819	2	STRG.23713.1,blat.proc3825160.chain_820	2
scaffold_12	starts_in_intron	12341983	12341983	-	asmbl_8876	none	blat.proc3825154.chain_3645	1	STRG.15142.1,blat.proc3825154.chain_3644	2
scaffold_25	spliced_intron	4810463	4810690	+	asmbl_33531	none	STRG.27415.1,Trinity_GG_32429_c0_g1_i5,blat.proc3825178.chain_527	3	blat.proc3825178.chain_526	1
scaffold_6	alt_donor	4320004	4320005	+	asmbl_46881	none	blat.proc3825166.chain_3613	1	STRG.7409.2,blat.proc3825166.chain_3614	2
scaffold_2	spliced_intron	15333838	15333989	+	asmbl_25031	none	STRG.2483.1,Trinity_GG_18716_c0_g1_i1	2	STRG.2483.3,Trinity_GG_18716_c0_g1_i3	2
scaffold_12	alt_donor	4613489	4613490	-	asmbl_8413,asmbl_8418,asmbl_8420	none	STRG.14639.2,STRG.14639.4,blat.proc3825154.chain_3136,blat.proc3825154.chain_3139	4	STRG.14639.1,blat.proc3825154.chain_3138,blat.proc3825154.chain_3140,blat.proc3825154.chain_3142	4
scaffold_1	alt_acceptor	2744687	2744688	-	asmbl_130	none	STRG.176.3	1	STRG.176.1,blat.proc3825148.chain_183	2
scaffold_15	alt_acceptor	15233211	15233212	-	asmbl_14762	none	STRG.18913.3	1	STRG.18913.1,blat.proc3825158.chain_34	2
scaffold_2	spliced_intron	9322220	9323761	-	asmbl_23386	none	STRG.2178.4	1	STRG.2178.3,Trinity_GG_1187_c1_g1_i2,blat.proc3825148.chain_2161	3
scaffold_1	retained_intron	14350452	14350634	-	asmbl_896	none	blat.proc3825148.chain_1024	1	STRG.1033.1,STRG.1033.2,blat.proc3825148.chain_1023,blat.proc3825148.chain_1025,blat.proc3825148.chain_1026	5
scaffold_16	starts_in_intron	4602698	4602698	+	asmbl_16190	none	blat.proc3825174.chain_56	1	STRG.19247.1,STRG.19247.2,blat.proc3825174.chain_57	3
scaffold_3	alternate_exon	18159427	18159472	-	asmbl_39599	none	STRG.4025.4	1	STRG.4025.1,STRG.4025.2,STRG.4025.3,blat.proc3825150.chain_205,blat.proc3825150.chain_206	5
scaffold_18	alt_acceptor	180051	180052	+	asmbl_20268,asmbl_20269	none	STRG.20973.1,blat.proc3825174.chain_1897,blat.proc3825174.chain_1898	3	blat.proc3825174.chain_1895	1
scaffold_22	starts_in_intron	507817	507817	-	asmbl_29102	none	Trinity_GG_13790_c0_g1_i4,blat.proc3825160.chain_1867	2	STRG.24702.1,STRG.24702.5,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i15,Trinity_GG_13790_c0_g1_i5,Trinity_GG_13790_c0_g1_i8,Trinity_GG_13790_c0_g1_i9,blat.proc3825160.chain_1860,blat.proc3825160.chain_1861,blat.proc3825160.chain_1863,blat.proc3825160.chain_1865,blat.proc3825160.chain_1866,blat.proc3825160.chain_1869	14
scaffold_6	spliced_intron	7516493	7516579	-	asmbl_48496,asmbl_48498	none	STRG.7655.3,STRG.7655.5,blat.proc3825152.chain_14	3	STRG.7655.2,blat.proc3825152.chain_15	2
scaffold_322	retained_intron	608	748	+	asmbl_40962	none	Trinity_GG_34074_c1_g1_i4,Trinity_GG_34184_c0_g1_i4,blat.proc3825178.chain_3552	3	STRG.30276.1	1
scaffold_16	alternate_exon	7216375	7240373	-	asmbl_17173,asmbl_17176	none	STRG.19399.1,STRG.19399.2	2	STRG.19399.6	1
scaffold_22	ends_in_intron	745220	745220	-	asmbl_29129	none	blat.proc3825160.chain_1925	1	STRG.24730.1,blat.proc3825160.chain_1924,blat.proc3825160.chain_1926	3
scaffold_10	spliced_intron	7685649	7686027	+	asmbl_3298	none	STRG.12557.2,blat.proc3825170.chain_1170	2	STRG.12557.4,STRG.12557.5,blat.proc3825170.chain_1164,blat.proc3825170.chain_1166,blat.proc3825170.chain_1167,blat.proc3825170.chain_1168	6
scaffold_9	ends_in_intron	2451574	2451574	-	asmbl_54874	none	Trinity_GG_6053_c0_g1_i2,blat.proc3825152.chain_3150	2	STRG.10888.1,Trinity_GG_6053_c0_g1_i1,blat.proc3825152.chain_3151	3
scaffold_12	ends_in_intron	2339111	2339111	-	asmbl_8325	none	STRG.14498.2,blat.proc3825154.chain_2991	2	STRG.14498.1,blat.proc3825154.chain_2992	2
scaffold_21	starts_in_intron	6403390	6403390	+	asmbl_28639	none	Trinity_GG_30650_c0_g1_i3,blat.proc3825176.chain_1276	2	STRG.24166.4	1
scaffold_16	retained_intron	145688	145807	+	asmbl_16003	none	STRG.19001.2	1	STRG.19001.1,blat.proc3825172.chain_3658	2
scaffold_10	alt_donor	6413511	6413512	-	asmbl_4451	none	STRG.12469.1	1	blat.proc3825154.chain_1025	1
scaffold_22	alternate_exon	9715517	9715541	+	asmbl_30311	none	STRG.25307.1,blat.proc3825176.chain_2352	2	blat.proc3825176.chain_2375	1
scaffold_23	retained_exon	4322149	4322192	-	asmbl_30860	none	STRG.25850.2	1	STRG.25850.1,blat.proc3825160.chain_3044	2
scaffold_13	alt_donor	15672447	15672448	+	asmbl_11525	none	STRG.16612.1	1	STRG.16612.2,STRG.16612.5,STRG.16612.6	3
scaffold_25	starts_in_intron	3635157	3635157	+	asmbl_33442	none	blat.proc3825178.chain_428	1	STRG.27312.1,STRG.27312.2,STRG.27312.3,blat.proc3825178.chain_426,blat.proc3825178.chain_427,blat.proc3825178.chain_429,blat.proc3825178.chain_430	7
scaffold_11	retained_intron	7049578	7049788	+	asmbl_5645	none	Trinity_GG_24878_c0_g1_i6,blat.proc3825170.chain_2271	2	STRG.13733.1,STRG.13733.4,Trinity_GG_24878_c0_g1_i2,blat.proc3825170.chain_2272	4
scaffold_14	alt_acceptor	15947031	15947032	+	asmbl_12653,asmbl_12654,asmbl_12656	none	STRG.17840.1,STRG.17840.3,blat.proc3825172.chain_2565,blat.proc3825172.chain_2566	4	STRG.17840.2,blat.proc3825172.chain_2563	2
scaffold_27	alt_donor	9105649	9105650	+	asmbl_36501,asmbl_36502,asmbl_36504,asmbl_36505,asmbl_36506	none	STRG.29163.1,STRG.29163.2,blat.proc3825178.chain_2362,blat.proc3825178.chain_2363,blat.proc3825178.chain_2364,blat.proc3825178.chain_2365	6	blat.proc3825178.chain_2361	1
scaffold_7	alt_acceptor	12053851	12053852	+	asmbl_50206	none	Trinity_GG_22477_c0_g1_i4,blat.proc3825168.chain_1830	2	STRG.9309.1,STRG.9309.2,blat.proc3825168.chain_1831	3
scaffold_1	alt_acceptor	9176439	9176440	-	asmbl_522	none	STRG.608.1,blat.proc3825148.chain_610	2	STRG.608.2	1
scaffold_29	ends_in_intron	10945	10945	-	asmbl_38631	none	Trinity_GG_16828_c0_g1_i3,blat.proc3825162.chain_3177	2	STRG.30013.1,STRG.30013.2,STRG.30013.3,blat.proc3825162.chain_3176,blat.proc3825162.chain_3178	5
scaffold_5	retained_exon	10171023	10171094	+	asmbl_45663	none	STRG.6320.1,blat.proc3825166.chain_2512	2	blat.proc3825166.chain_2511	1
scaffold_26	alternate_exon	5480963	5481074	+	asmbl_34996,asmbl_34997	none	STRG.28252.3,STRG.28252.4	2	STRG.28252.1,STRG.28252.2	2
scaffold_6	ends_in_intron	13168555	13168555	-	asmbl_48891	none	blat.proc3825152.chain_475	1	STRG.8074.1,STRG.8074.2,blat.proc3825152.chain_470,blat.proc3825152.chain_472,blat.proc3825152.chain_476,blat.proc3825152.chain_477	6
scaffold_2	starts_in_intron	5254626	5254626	+	asmbl_24413	none	blat.proc3825164.chain_2060	1	STRG.1942.1,blat.proc3825164.chain_2058	2
scaffold_28	retained_intron	5230739	5230823	-	asmbl_38264	none	STRG.29674.2	1	Trinity_GG_16632_c0_g1_i9,blat.proc3825162.chain_2849	2
scaffold_20	alternate_exon	8167820	8167954	+	asmbl_26748	none	STRG.23366.2	1	STRG.23366.1,Trinity_GG_30189_c0_g1_i1,blat.proc3825176.chain_502	3
scaffold_6	alt_acceptor	600726	600727	-	asmbl_48048	none	STRG.7125.5,blat.proc3825150.chain_3225	2	STRG.7125.1,STRG.7125.2,STRG.7125.3,STRG.7125.4,blat.proc3825150.chain_3224	5
scaffold_6	retained_exon	12520880	12520973	-	asmbl_48815,asmbl_48818	none	STRG.8011.2,blat.proc3825152.chain_396	2	STRG.8011.3	1
scaffold_12	starts_in_intron	14256647	14256647	+	asmbl_8076	none	STRG.15262.2,blat.proc3825170.chain_3697	2	STRG.15262.1,Trinity_GG_25682_c0_g1_i2,blat.proc3825170.chain_3696	3
scaffold_13	skipped_exon	394206	395582	-	asmbl_9334,asmbl_9335,asmbl_9345,asmbl_9349,asmbl_9351	none	STRG.15444.2,STRG.15444.4,STRG.15444.5,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i5,blat.proc3825156.chain_351,blat.proc3825156.chain_354,blat.proc3825156.chain_360,blat.proc3825156.chain_362	11	STRG.15444.1,STRG.15444.3,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_352,blat.proc3825156.chain_355,blat.proc3825156.chain_364	9
scaffold_17	ends_in_intron	12218351	12218351	-	asmbl_18318	none	Trinity_GG_11665_c1_g1_i1,blat.proc3825158.chain_1765	2	STRG.20757.1,blat.proc3825158.chain_1764	2
scaffold_10	skipped_exon	17325221	17326440	-	asmbl_5051	none	STRG.13182.1,blat.proc3825154.chain_1775	2	STRG.13182.2,blat.proc3825154.chain_1776	2
scaffold_17	retained_intron	8318266	8318623	+	asmbl_18972,asmbl_18973	none	blat.proc3825174.chain_1203,blat.proc3825174.chain_1205	2	STRG.20456.3	1
scaffold_7	alt_donor	13513475	13513476	+	asmbl_50354	none	STRG.9454.2,Trinity_GG_22543_c0_g1_i2,blat.proc3825168.chain_1932	3	STRG.9454.1,Trinity_GG_22543_c0_g1_i1,blat.proc3825168.chain_1931	3
scaffold_13	retained_exon	8348306	8348586	+	asmbl_11123	none	STRG.16126.1,blat.proc3825172.chain_911	2	STRG.16126.2,blat.proc3825172.chain_910	2
scaffold_2	spliced_intron	18730231	18730319	-	asmbl_23817	none	STRG.2753.1,blat.proc3825148.chain_2696	2	blat.proc3825148.chain_2697	1
scaffold_12	alt_donor	2272521	2272522	-	asmbl_8322	none	STRG.14491.2	1	STRG.14491.1,blat.proc3825154.chain_2987	2
scaffold_16	alternate_exon	6147056	6147791	+	asmbl_16278,asmbl_16284	none	STRG.19354.2,STRG.19354.3,blat.proc3825174.chain_143	3	STRG.19354.1,STRG.19354.4,blat.proc3825174.chain_141,blat.proc3825174.chain_144,blat.proc3825174.chain_145	5
scaffold_25	spliced_intron	339732	339809	-	asmbl_33970	none	blat.proc3825162.chain_418	1	blat.proc3825162.chain_419	1
scaffold_17	ends_in_intron	4652779	4652779	-	asmbl_17875	none	blat.proc3825158.chain_1178	1	STRG.20198.1	1
scaffold_5	alt_donor	8764198	8764199	-	asmbl_44238	none	Trinity_GG_3495_c0_g1_i3,blat.proc3825150.chain_2406	2	STRG.6212.2,Trinity_GG_3495_c0_g1_i1,blat.proc3825150.chain_2407	3
scaffold_8	ends_in_intron	9476635	9476635	-	asmbl_52045	none	blat.proc3825152.chain_2472	1	STRG.10206.1,Trinity_GG_5695_c0_g1_i6,blat.proc3825152.chain_2473,blat.proc3825152.chain_2475,blat.proc3825152.chain_2477	5
scaffold_4	alternate_exon	4414581	4414706	+	asmbl_41249,asmbl_41259	none	Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_850,blat.proc3825166.chain_852	3	STRG.4349.1,STRG.4349.3,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_843,blat.proc3825166.chain_851,blat.proc3825166.chain_853	7
scaffold_20	retained_intron	1126444	1126470	-	asmbl_25544	none	STRG.22825.1	1	blat.proc3825158.chain_3682	1
scaffold_2258	retained_exon	812	921	-	asmbl_30559	none	STRG.30733.1	1	STRG.30733.2	1
scaffold_5	ends_in_intron	15765289	15765289	+	asmbl_46015	none	Trinity_GG_20993_c1_g1_i1,blat.proc3825166.chain_2924	2	STRG.6771.1,blat.proc3825166.chain_2914,blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	8
scaffold_14	spliced_intron	2376089	2376796	-	asmbl_12938,asmbl_12939,asmbl_12940,asmbl_12941	none	STRG.16854.1,STRG.16854.2,STRG.16854.4,STRG.16854.5	4	STRG.16854.3,STRG.16854.6,STRG.16854.7,Trinity_GG_9462_c0_g1_i1,Trinity_GG_9462_c0_g1_i7,blat.proc3825156.chain_1714	6
scaffold_16	starts_in_intron	11345200	11345200	-	asmbl_17338	none	blat.proc3825158.chain_743	1	STRG.19665.1,blat.proc3825158.chain_742	2
scaffold_11	spliced_intron	1981821	1981961	-	asmbl_6459,asmbl_6461	none	STRG.13359.2,STRG.13359.3,blat.proc3825154.chain_1935	3	STRG.13359.1,blat.proc3825154.chain_1934	2
scaffold_28	alt_donor	9226023	9226024	-	asmbl_38499	none	STRG.29966.2	1	STRG.29966.3	1
scaffold_19	alt_acceptor	8339611	8339612	+	asmbl_21513,asmbl_21514	none	STRG.22292.2,blat.proc3825158.chain_3094,blat.proc3825174.chain_3198	3	STRG.22292.1	1
scaffold_21	starts_in_intron	10283543	10283543	-	asmbl_28025	none	blat.proc3825160.chain_1691	1	STRG.24492.1,blat.proc3825160.chain_1690	2
scaffold_13	spliced_intron	2570469	2570603	+	asmbl_10624,asmbl_10625,asmbl_10626,asmbl_10628,asmbl_10629	none	STRG.15563.1,STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_327	8	STRG.15563.2,Trinity_GG_25871_c0_g1_i4,blat.proc3825172.chain_323,blat.proc3825172.chain_326	4
scaffold_23	alt_donor	7005931	7005932	-	asmbl_31005	none	STRG.26025.2	1	STRG.26025.3,STRG.26025.4,STRG.26025.5,blat.proc3825160.chain_3123	4
scaffold_3	retained_intron	18733461	18733619	+	asmbl_40743	none	blat.proc3825166.chain_542	1	STRG.4057.1,blat.proc3825166.chain_543	2
scaffold_2	retained_exon	14276258	14276384	+	asmbl_24897,asmbl_24903	none	STRG.2428.1,blat.proc3825164.chain_2591,blat.proc3825164.chain_2597	3	STRG.2428.2	1
scaffold_8	alt_donor	11675642	11675643	-	asmbl_52153	none	STRG.10365.1	1	STRG.10365.2	1
scaffold_19	starts_in_intron	1736017	1736017	-	asmbl_22048	none	blat.proc3825158.chain_2780	1	STRG.21930.1,STRG.21930.2,blat.proc3825158.chain_2781	3
scaffold_10	retained_intron	6447456	6447566	-	asmbl_4458,asmbl_4460	none	blat.proc3825154.chain_1038,blat.proc3825154.chain_1040	2	blat.proc3825154.chain_1039	1
scaffold_26	retained_intron	3791532	3791799	+	asmbl_34835,asmbl_34837	none	blat.proc3825178.chain_1145,blat.proc3825178.chain_1153	2	STRG.28068.3	1
scaffold_2	starts_in_intron	14014150	14014150	-	asmbl_23557	none	Trinity_GG_1332_c0_g1_i3,blat.proc3825148.chain_2400	2	STRG.2395.1,STRG.2395.2,Trinity_GG_1332_c0_g1_i1,Trinity_GG_1332_c0_g1_i2,blat.proc3825148.chain_2398,blat.proc3825148.chain_2399	6
scaffold_27	starts_in_intron	9120184	9120184	+	asmbl_36508	none	blat.proc3825178.chain_2358	1	STRG.29160.1,blat.proc3825178.chain_2357	2
scaffold_26	retained_intron	4441929	4442021	+	asmbl_34899	none	STRG.28147.2,Trinity_GG_32860_c0_g1_i1,blat.proc3825178.chain_1234	3	STRG.28147.1,blat.proc3825178.chain_1233,blat.proc3825178.chain_1235	3
scaffold_3	retained_intron	5260258	5260560	-	asmbl_38840	none	Trinity_GG_1739_c0_g1_i1,blat.proc3825148.chain_3052	2	STRG.3218.1,Trinity_GG_1739_c0_g1_i3,Trinity_GG_1739_c0_g1_i5,blat.proc3825148.chain_3053,blat.proc3825148.chain_3055,blat.proc3825148.chain_3056	6
scaffold_7	starts_in_intron	13864434	13864434	-	asmbl_51320	none	STRG.9480.3	1	STRG.9480.1,STRG.9480.2,STRG.9480.4,STRG.9480.5,blat.proc3825152.chain_1822,blat.proc3825152.chain_1823,blat.proc3825152.chain_1825	7
scaffold_4	skipped_exon	16882986	16884087	-	asmbl_43233	none	STRG.5278.2	1	STRG.5278.1,Trinity_GG_2939_c0_g1_i1,blat.proc3825150.chain_1434	3
scaffold_11	starts_in_intron	11939925	11939925	-	asmbl_7042	none	STRG.14177.2	1	STRG.14177.3,STRG.14177.4	2
scaffold_13	retained_intron	393652	393774	-	asmbl_9336	none	Trinity_GG_8688_c0_g1_i12,blat.proc3825156.chain_365	2	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.5,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24
scaffold_4	starts_in_intron	9909666	9909666	+	asmbl_41629	none	blat.proc3825166.chain_1168	1	STRG.4756.1,STRG.4756.2,blat.proc3825166.chain_1169	3
scaffold_17	alt_acceptor	8317549	8317550	+	asmbl_18965,asmbl_18969,asmbl_18971,asmbl_18972	none	STRG.20456.3,STRG.20456.5,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1203	5	STRG.20456.4,STRG.20456.6	2
scaffold_27	retained_exon	7193619	7193775	-	asmbl_37094	none	STRG.29085.1,blat.proc3825162.chain_2224	2	STRG.29085.2,blat.proc3825162.chain_2223	2
scaffold_5	spliced_intron	15539705	15539796	-	asmbl_44694	none	STRG.6744.1	1	STRG.6744.2	1
scaffold_6	alt_acceptor	4125983	4125984	-	asmbl_48287	none	STRG.7388.3	1	STRG.7388.1,STRG.7388.2	2
scaffold_2	starts_in_intron	6086832	6086832	-	asmbl_23177	none	blat.proc3825148.chain_1866	1	STRG.1980.3,Trinity_GG_1051_c0_g1_i6,blat.proc3825148.chain_1867	3
scaffold_10	retained_exon	1493413	1493587	-	asmbl_4067	none	STRG.12025.3	1	STRG.12025.1,STRG.12025.2,blat.proc3825154.chain_512,blat.proc3825154.chain_513	4
scaffold_506	retained_intron	2659	3028	+	asmbl_46502	none	blat.proc3825178.chain_3450	1	STRG.30354.1,blat.proc3825178.chain_3453,blat.proc3825178.chain_3454	3
scaffold_4	ends_in_intron	15358546	15358546	+	asmbl_41946	none	STRG.5127.1,blat.proc3825166.chain_1557	2	STRG.5127.2	1
scaffold_19	alt_acceptor	11528935	11528936	-	asmbl_22419	none	STRG.22491.3	1	STRG.22491.1,blat.proc3825158.chain_3208	2
scaffold_4	alt_donor	19337808	19337809	-	asmbl_43427	none	blat.proc3825150.chain_1640	1	STRG.5515.1,STRG.5515.2	2
scaffold_1	starts_in_intron	1826087	1826087	-	asmbl_89	none	Trinity_GG_60_c0_g1_i2,blat.proc3825148.chain_102	2	STRG.111.1,Trinity_GG_60_c0_g1_i1,blat.proc3825148.chain_103	3
scaffold_13	retained_intron	16250502	16250639	+	asmbl_11566	none	Trinity_GG_26497_c0_g1_i4,blat.proc3825172.chain_1458	2	STRG.16679.1,blat.proc3825172.chain_1459	2
scaffold_10	ends_in_intron	6330603	6330603	+	asmbl_3235	none	blat.proc3825170.chain_1065	1	STRG.12464.1	1
scaffold_5	retained_intron	2400901	2400920	+	asmbl_45165	none	STRG.5768.2,Trinity_GG_20458_c1_g1_i1	2	blat.proc3825166.chain_1991	1
scaffold_12	alt_acceptor	14946298	14946299	-	asmbl_9016,asmbl_9018	none	STRG.15288.1,Trinity_GG_8556_c0_g1_i1,Trinity_GG_8556_c0_g1_i5,blat.proc3825156.chain_84,blat.proc3825156.chain_86	5	STRG.15288.2,Trinity_GG_8556_c0_g1_i4,blat.proc3825156.chain_85	3
scaffold_21	starts_in_intron	7811910	7811910	-	asmbl_27853	none	STRG.24317.2,blat.proc3825160.chain_1427	2	STRG.24317.1,STRG.24317.3,blat.proc3825160.chain_1426	3
scaffold_27	skipped_exon	6782129	6782627	-	asmbl_37080	none	STRG.29050.1,blat.proc3825162.chain_2279	2	STRG.29050.3,blat.proc3825162.chain_2278	2
scaffold_11	ends_in_intron	11942444	11942444	-	asmbl_7051	none	STRG.14177.6	1	STRG.14177.4	1
scaffold_4	alt_donor	15027432	15027433	-	asmbl_43085	none	STRG.5112.1,blat.proc3825150.chain_1251	2	STRG.5112.2	1
scaffold_9	starts_in_intron	5022108	5022108	+	asmbl_53981	none	Trinity_GG_23480_c1_g1_i1,blat.proc3825168.chain_3602	2	STRG.11074.2	1
scaffold_14	alt_acceptor	3588754	3588755	+	asmbl_11951	none	STRG.16942.3	1	STRG.16942.1,blat.proc3825172.chain_1710	2
scaffold_1	retained_intron	5739762	5739896	+	asmbl_1773	none	Trinity_GG_17568_c1_g1_i1,blat.proc3825164.chain_532	2	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528,blat.proc3825164.chain_529,blat.proc3825164.chain_530	8
scaffold_5	spliced_intron	14569299	14569509	-	asmbl_44599,asmbl_44601	none	STRG.6658.1,STRG.6658.2,blat.proc3825150.chain_2785	3	blat.proc3825150.chain_2783	1
scaffold_15	skipped_exon	1961303	1961855	+	asmbl_15041	none	STRG.17992.1	1	STRG.17992.2	1
scaffold_3	retained_intron	7708984	7709075	-	asmbl_38980	none	blat.proc3825148.chain_3200	1	STRG.3368.1,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3201,blat.proc3825148.chain_3203	5
scaffold_1	ends_in_intron	12462206	12462206	-	asmbl_723	none	Trinity_GG_408_c0_g1_i17,blat.proc3825148.chain_772	2	STRG.867.1,STRG.867.2,STRG.867.3,STRG.867.4,STRG.867.5	5
scaffold_2	alt_acceptor	888817	888818	+	asmbl_24131,asmbl_24134	none	STRG.1565.5,blat.proc3825164.chain_1715	2	blat.proc3825164.chain_1714	1
scaffold_19	spliced_intron	11168790	11168935	+	asmbl_21670	none	STRG.22450.1,blat.proc3825174.chain_3410	2	blat.proc3825174.chain_3411	1
scaffold_20	ends_in_intron	11080533	11080533	-	asmbl_26132	none	Trinity_GG_13116_c0_g1_i4,blat.proc3825160.chain_596	2	STRG.23624.1,STRG.23624.2,blat.proc3825160.chain_591,blat.proc3825160.chain_592,blat.proc3825160.chain_593,blat.proc3825160.chain_595	6
scaffold_6	alt_donor	11112916	11112917	-	asmbl_48741	none	STRG.7925.2	1	STRG.7925.1	1
scaffold_5	spliced_intron	19351052	19351309	-	asmbl_44899,asmbl_44900	none	STRG.7034.1,STRG.7034.2,blat.proc3825150.chain_3156	3	blat.proc3825150.chain_3157	1
scaffold_3026	alt_donor	362	363	+	asmbl_40914	none	STRG.30816.3	1	STRG.30816.1	1
scaffold_9	ends_in_intron	13306974	13306974	-	asmbl_55432	none	blat.proc3825154.chain_74	1	STRG.11631.1,STRG.11631.2,blat.proc3825154.chain_72	3
scaffold_17	spliced_intron	13048788	13049071	+	asmbl_19306	none	STRG.20798.1,blat.proc3825174.chain_1646	2	Trinity_GG_28702_c0_g2_i1,blat.proc3825174.chain_1647	2
scaffold_25	alt_donor	9119292	9119293	+	asmbl_33783	none	STRG.27725.3	1	STRG.27725.4,STRG.27725.5,STRG.27725.6,blat.proc3825178.chain_859,blat.proc3825178.chain_862	5
scaffold_11	starts_in_intron	15833428	15833428	+	asmbl_6137	none	Trinity_GG_25173_c0_g1_i4	1	STRG.14321.1,blat.proc3825170.chain_2800	2
scaffold_8	skipped_exon	11848560	11850658	+	asmbl_53280,asmbl_53281,asmbl_53283	none	blat.proc3825168.chain_3019,blat.proc3825168.chain_3023,blat.proc3825168.chain_3027	3	STRG.10390.3,blat.proc3825168.chain_3016,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022	4
scaffold_8	starts_in_intron	6114906	6114906	+	asmbl_52943	none	Trinity_GG_22863_c2_g1_i1,blat.proc3825168.chain_2546	2	STRG.10015.2,Trinity_GG_22863_c0_g1_i1,blat.proc3825168.chain_2540	3
scaffold_23	retained_exon	4100078	4100716	-	asmbl_30831	none	blat.proc3825160.chain_3031	1	STRG.25826.1	1
scaffold_13	ends_in_intron	6740210	6740210	+	asmbl_10967	none	Trinity_GG_26069_c0_g1_i3,blat.proc3825172.chain_690	2	STRG.15956.1	1
scaffold_4	spliced_intron	4912273	4912392	+	asmbl_41314,asmbl_41317	none	STRG.4387.2,blat.proc3825166.chain_862	2	STRG.4387.1,Trinity_GG_19752_c0_g1_i3,blat.proc3825166.chain_864,blat.proc3825166.chain_866	4
scaffold_12	alternate_exon	2927115	2927734	-	asmbl_8334	none	STRG.14526.5	1	STRG.14526.3	1
scaffold_22	starts_in_intron	4345833	4345833	+	asmbl_29982	none	STRG.24852.2,blat.proc3825176.chain_1947	2	STRG.24852.1,blat.proc3825176.chain_1948	2
scaffold_8	retained_exon	11849715	11850110	+	asmbl_53282	none	blat.proc3825168.chain_3016	1	blat.proc3825168.chain_3019,blat.proc3825168.chain_3023,blat.proc3825168.chain_3027	3
scaffold_17	starts_in_intron	3659395	3659395	+	asmbl_18728	none	Trinity_GG_28342_c0_g2_i1,blat.proc3825174.chain_1005	2	blat.proc3825174.chain_1003	1
scaffold_10	spliced_intron	13787525	13787965	+	asmbl_3619	none	STRG.12979.1	1	STRG.12979.2	1
scaffold_17	ends_in_intron	7072393	7072393	-	asmbl_18037	none	blat.proc3825158.chain_1418	1	STRG.20377.1,blat.proc3825158.chain_1417	2
scaffold_16	alternate_exon	11774056	11774095	+	asmbl_16602	none	Trinity_GG_28110_c0_g1_i1,blat.proc3825174.chain_625	2	STRG.19699.1,Trinity_GG_28110_c0_g1_i2,blat.proc3825174.chain_626	3
scaffold_11	spliced_intron	4760580	4761026	-	asmbl_6629,asmbl_6633	none	STRG.13575.1,blat.proc3825154.chain_2096,blat.proc3825154.chain_2097	3	Trinity_GG_7573_c0_g1_i3,blat.proc3825154.chain_2095,blat.proc3825154.chain_2098	3
scaffold_1	ends_in_intron	12333784	12333784	-	asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_710,asmbl_711,asmbl_712,asmbl_713	none	Trinity_GG_444_c0_g1_i11,blat.proc3825148.chain_832,blat.proc3825148.chain_835,blat.proc3825148.chain_837,blat.proc3825148.chain_838,blat.proc3825148.chain_839	6	STRG.849.1,blat.proc3825148.chain_825,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	6
scaffold_13	spliced_intron	16460477	16460808	-	asmbl_10300,asmbl_10301,asmbl_10303,asmbl_10305	none	STRG.16703.1,STRG.16703.2,STRG.16703.3,STRG.16703.4,Trinity_GG_9330_c0_g1_i5,Trinity_GG_9330_c0_g1_i6,blat.proc3825156.chain_1486,blat.proc3825156.chain_1488,blat.proc3825156.chain_1489	9	Trinity_GG_9330_c0_g1_i3,blat.proc3825156.chain_1487	2
scaffold_1	alt_donor	6752941	6752942	+	asmbl_1850	none	STRG.465.1,blat.proc3825164.chain_606	2	STRG.465.2,blat.proc3825164.chain_605	2
scaffold_15	alt_acceptor	12000469	12000470	-	asmbl_14548,asmbl_14551	none	STRG.18639.1,STRG.18639.4,Trinity_GG_10485_c0_g1_i2,blat.proc3825156.chain_3534	4	STRG.18639.2,STRG.18639.3,STRG.18639.6,Trinity_GG_10485_c0_g1_i3,Trinity_GG_10485_c0_g1_i6,blat.proc3825156.chain_3529,blat.proc3825156.chain_3531	7
scaffold_10	ends_in_intron	10271788	10271788	+	asmbl_3410	none	blat.proc3825170.chain_1326	1	STRG.12715.1	1
scaffold_17	starts_in_intron	13974029	13974029	-	asmbl_18399	none	blat.proc3825158.chain_1835	1	STRG.20885.1,STRG.20885.3,blat.proc3825158.chain_1833,blat.proc3825158.chain_1834	4
scaffold_1	spliced_intron	16478498	16478746	-	asmbl_989,asmbl_990,asmbl_991,asmbl_994,asmbl_995,asmbl_996	none	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1097,blat.proc3825148.chain_1098,blat.proc3825148.chain_1100,blat.proc3825148.chain_1102,blat.proc3825148.chain_1104	8	blat.proc3825148.chain_1099	1
scaffold_1	starts_in_intron	4574454	4574454	-	asmbl_208	none	STRG.285.5	1	STRG.285.1,blat.proc3825148.chain_155,blat.proc3825148.chain_159,blat.proc3825148.chain_160	4
scaffold_3	alt_acceptor	14835431	14835432	+	asmbl_40555,asmbl_40556	none	STRG.3832.1,Trinity_GG_19457_c0_g1_i1,Trinity_GG_19457_c0_g1_i3,blat.proc3825166.chain_316,blat.proc3825166.chain_317	5	Trinity_GG_19457_c0_g1_i4	1
scaffold_18	retained_intron	8912486	8913581	-	asmbl_20042,asmbl_20044,asmbl_20050	none	STRG.21558.3,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2451	4	STRG.21558.1	1
scaffold_15	spliced_intron	8039747	8042221	-	asmbl_14327	none	STRG.18380.1,blat.proc3825156.chain_3224	2	STRG.18380.2,blat.proc3825156.chain_3223,blat.proc3825156.chain_3225	3
scaffold_1	skipped_exon	9312842	9313118	+	asmbl_1983	none	STRG.627.2	1	STRG.627.1,blat.proc3825164.chain_774	2
scaffold_19	starts_in_intron	7904699	7904699	+	asmbl_21494	none	blat.proc3825174.chain_3223	1	STRG.22256.1,blat.proc3825174.chain_3222	2
scaffold_1	spliced_intron	14427728	14428504	-	asmbl_922	none	STRG.1045.3,blat.proc3825148.chain_1049	2	STRG.1045.4,blat.proc3825148.chain_1050	2
scaffold_4	alt_acceptor	4095842	4095843	+	asmbl_41218	none	STRG.4315.3,blat.proc3825166.chain_707	2	STRG.4315.1,STRG.4315.4,blat.proc3825166.chain_703,blat.proc3825166.chain_704	4
scaffold_4	alt_donor	19337804	19337805	-	asmbl_43425	none	STRG.5515.1	1	STRG.5515.2,blat.proc3825150.chain_1640	2
scaffold_21	retained_intron	5537847	5538423	-	asmbl_27673,asmbl_27674	none	STRG.24086.2,blat.proc3825160.chain_1271,blat.proc3825160.chain_1277	3	STRG.24086.1,blat.proc3825160.chain_1275	2
scaffold_2	spliced_intron	7469156	7469515	-	asmbl_23263	none	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2	blat.proc3825148.chain_2058,blat.proc3825148.chain_2064	2
scaffold_4	starts_in_intron	1394223	1394223	-	asmbl_42372	none	blat.proc3825150.chain_409	1	STRG.4180.1,blat.proc3825150.chain_410	2
scaffold_8	alt_donor	4634269	4634270	-	asmbl_51783	none	STRG.9925.1	1	STRG.9925.2	1
scaffold_19	spliced_intron	678886	678974	+	asmbl_21202	none	blat.proc3825174.chain_2897	1	Trinity_GG_29401_c0_g1_i4,blat.proc3825174.chain_2898	2
scaffold_19	alt_acceptor	724687	724688	+	asmbl_21204,asmbl_21205,asmbl_21206	none	STRG.21857.1,STRG.21857.2,STRG.21857.4	3	STRG.21857.3	1
scaffold_13	skipped_exon	16437030	16437484	+	asmbl_11577,asmbl_11581	none	STRG.16696.1,STRG.16696.2,Trinity_GG_26477_c0_g1_i5,blat.proc3825172.chain_1426	4	blat.proc3825172.chain_1427	1
scaffold_2	starts_in_intron	13826961	13826961	-	asmbl_23527	none	blat.proc3825148.chain_2377	1	STRG.2379.1,blat.proc3825148.chain_2376	2
scaffold_9	starts_in_intron	6847692	6847692	-	asmbl_55078,asmbl_55079	none	STRG.11196.2,STRG.11196.3,blat.proc3825152.chain_3346,blat.proc3825152.chain_3347	4	STRG.11196.1,blat.proc3825152.chain_3348	2
scaffold_1999	alternate_exon	27	44	+	asmbl_22777	none	STRG.30689.1,blat.proc3825158.chain_3627	2	STRG.30689.2,blat.proc3825178.chain_3643,blat.proc3825178.chain_3644	3
scaffold_8	retained_exon	11560366	11560578	+	asmbl_53232	none	STRG.10351.1,Trinity_GG_23082_c0_g1_i2,blat.proc3825168.chain_2934,blat.proc3825168.chain_2935	4	STRG.10351.2	1
scaffold_21	retained_intron	4099856	4100642	+	asmbl_28505	none	STRG.24000.3,blat.proc3825176.chain_1242	2	STRG.24000.4	1
scaffold_16	ends_in_intron	1514567	1514567	+	asmbl_16082,asmbl_16083,asmbl_16085	none	STRG.19099.1,STRG.19099.3,blat.proc3825174.chain_10,blat.proc3825174.chain_11	4	STRG.19099.2	1
scaffold_28	skipped_exon	56889	58087	-	asmbl_37885	none	blat.proc3825162.chain_2400	1	STRG.29241.1,blat.proc3825162.chain_2397,blat.proc3825162.chain_2401,blat.proc3825162.chain_2402	4
scaffold_2	retained_intron	2995469	2995489	-	asmbl_22951	none	STRG.1746.4	1	STRG.1746.3	1
scaffold_25	starts_in_intron	9940807	9940807	-	asmbl_34529,asmbl_34532	none	blat.proc3825162.chain_1152,blat.proc3825162.chain_1157	2	STRG.27806.1,STRG.27808.1,blat.proc3825162.chain_1154	3
scaffold_1	spliced_intron	5735051	5735263	+	asmbl_1767,asmbl_1768,asmbl_1769,asmbl_1770	none	STRG.389.1,STRG.389.2,blat.proc3825164.chain_505,blat.proc3825164.chain_508,blat.proc3825164.chain_509	5	blat.proc3825164.chain_506	1
scaffold_22	retained_exon	685622	685673	+	asmbl_29879	none	STRG.24720.1	1	Trinity_GG_30975_c0_g1_i1,blat.proc3825176.chain_1840	2
scaffold_15	starts_in_intron	3693758	3693758	-	asmbl_14111	none	blat.proc3825156.chain_2989	1	STRG.18149.2,STRG.18149.3	2
scaffold_340	alt_acceptor	2918	2919	+	asmbl_41014	none	STRG.30295.1	1	STRG.30295.2,STRG.30295.3	2
scaffold_15	retained_intron	9573070	9573444	-	asmbl_14384	none	Trinity_GG_10357_c3_g1_i1,blat.proc3825156.chain_3282	2	STRG.18476.1,blat.proc3825156.chain_3280,blat.proc3825156.chain_3281	3
scaffold_17	retained_intron	9005779	9006436	+	asmbl_19057	none	blat.proc3825174.chain_1323	1	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4
scaffold_11	retained_exon	3091977	3092261	+	asmbl_5399	none	STRG.13431.2,blat.proc3825170.chain_1961	2	STRG.13431.1	1
scaffold_1	starts_in_intron	13129196	13129196	-	asmbl_797	none	blat.proc3825148.chain_912	1	STRG.955.1,blat.proc3825148.chain_913,blat.proc3825148.chain_914,blat.proc3825148.chain_915	4
scaffold_6	retained_exon	18174352	18174423	-	asmbl_49229	none	blat.proc3825152.chain_916	1	STRG.8498.1,blat.proc3825152.chain_915	2
scaffold_27	spliced_intron	1638883	1639004	-	asmbl_36774	none	STRG.28656.1,blat.proc3825162.chain_1859	2	blat.proc3825162.chain_1860	1
scaffold_1	starts_in_intron	12449207	12449207	+	asmbl_2223	none	Trinity_GG_17840_c0_g1_i9,blat.proc3825164.chain_1026	2	STRG.859.2,Trinity_GG_17840_c0_g1_i2,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1030,blat.proc3825164.chain_1031	5
scaffold_6	spliced_intron	8172023	8172117	-	asmbl_48536,asmbl_48538,asmbl_48541,asmbl_48542,asmbl_48544	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_87,blat.proc3825152.chain_90,blat.proc3825152.chain_91,blat.proc3825152.chain_93	6	Trinity_GG_4351_c0_g1_i4,blat.proc3825152.chain_86,blat.proc3825152.chain_88,blat.proc3825152.chain_92	4
scaffold_9	starts_in_intron	12270840	12270840	+	asmbl_54423	none	Trinity_GG_23765_c0_g1_i2,blat.proc3825170.chain_372	2	STRG.11550.1,blat.proc3825170.chain_371,blat.proc3825170.chain_373,blat.proc3825170.chain_374	4
scaffold_21	retained_intron	5537163	5537307	-	asmbl_27673,asmbl_27674,asmbl_27675	none	STRG.24086.2,blat.proc3825160.chain_1271,blat.proc3825160.chain_1275,blat.proc3825160.chain_1277	4	STRG.24086.1	1
scaffold_5	alt_donor	8082100	8082101	+	asmbl_45525	none	STRG.6169.1	1	STRG.6169.2	1
scaffold_15	retained_intron	15501375	15501520	+	asmbl_15800	none	Trinity_GG_27698_c0_g1_i2,blat.proc3825172.chain_3599	2	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602	5
scaffold_14	alternate_exon	8216518	8217384	-	asmbl_13251,asmbl_13252,asmbl_13254,asmbl_13255,asmbl_13256	none	STRG.17234.1,STRG.17234.2,blat.proc3825156.chain_2055,blat.proc3825156.chain_2056,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	7	STRG.17234.4,STRG.17234.5	2
scaffold_15	retained_intron	16266207	16266369	-	asmbl_14822	none	Trinity_GG_10657_c0_g1_i2,blat.proc3825158.chain_94	2	STRG.18981.1,blat.proc3825158.chain_93	2
scaffold_2	retained_intron	6765473	6765659	+	asmbl_24496,asmbl_24497,asmbl_24498	none	Trinity_GG_18452_c0_g1_i2,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i9,blat.proc3825164.chain_2146,blat.proc3825164.chain_2147,blat.proc3825164.chain_2149	6	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	9
scaffold_3	ends_in_intron	7216974	7216974	-	asmbl_38957	none	Trinity_GG_1790_c0_g3_i1,blat.proc3825148.chain_3188	2	STRG.3326.1,STRG.3326.2,blat.proc3825148.chain_3185,blat.proc3825148.chain_3187	4
scaffold_9	alt_acceptor	9707264	9707265	+	asmbl_54236	none	STRG.11349.2,blat.proc3825170.chain_143	2	STRG.11349.6	1
scaffold_1	ends_in_intron	6974085	6974085	+	asmbl_1869	none	blat.proc3825164.chain_646	1	STRG.490.1,blat.proc3825164.chain_645,blat.proc3825164.chain_647,blat.proc3825164.chain_648	4
scaffold_25	alt_acceptor	2979597	2979598	-	asmbl_34082	none	STRG.27241.2	1	STRG.27241.1,blat.proc3825162.chain_612	2
scaffold_3	retained_intron	3322168	3322250	-	asmbl_38775	none	blat.proc3825148.chain_2947	1	STRG.3080.1,STRG.3080.2,blat.proc3825148.chain_2945,blat.proc3825148.chain_2946	4
scaffold_4	starts_in_intron	7267143	7267143	+	asmbl_41485	none	Trinity_GG_19860_c0_g1_i2,blat.proc3825166.chain_1047	2	STRG.4561.2,STRG.4561.5,STRG.4561.6,STRG.4561.7,Trinity_GG_19860_c0_g1_i1,Trinity_GG_19860_c0_g1_i3,Trinity_GG_19860_c0_g1_i4,blat.proc3825166.chain_1048,blat.proc3825166.chain_1049,blat.proc3825166.chain_1050	10
scaffold_6	starts_in_intron	9180811	9180811	-	asmbl_48615	none	blat.proc3825152.chain_178	1	STRG.7796.1,blat.proc3825152.chain_177	2
scaffold_21	skipped_exon	3169154	3170344	+	asmbl_28466,asmbl_28470,asmbl_28472	none	STRG.23959.3,STRG.23959.5,blat.proc3825176.chain_1133	3	STRG.23959.1,STRG.23959.2,STRG.23959.4,blat.proc3825176.chain_1132,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	9
scaffold_7	starts_in_intron	228594	228594	-	asmbl_50681	none	Trinity_GG_4927_c1_g1_i1,blat.proc3825152.chain_1089	2	STRG.8597.1,Trinity_GG_4927_c1_g1_i2,blat.proc3825152.chain_1088	3
scaffold_9	alt_acceptor	16560431	16560432	-	asmbl_55582	none	STRG.11806.4,Trinity_GG_6524_c0_g2_i1,blat.proc3825154.chain_276	3	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7
scaffold_17	retained_exon	2681893	2682008	+	asmbl_18680,asmbl_18682	none	STRG.20069.1,blat.proc3825174.chain_849,blat.proc3825174.chain_851	3	STRG.20069.2,STRG.20069.3,blat.proc3825174.chain_848	3
scaffold_2	alternate_exon	14278992	14279018	+	asmbl_24905	none	blat.proc3825164.chain_2594	1	STRG.2428.1,STRG.2428.2,STRG.2428.3,STRG.2428.4,blat.proc3825164.chain_2593,blat.proc3825164.chain_2596	6
scaffold_21	retained_intron	8008219	8008376	+	asmbl_28777	none	Trinity_GG_30800_c1_g1_i5,Trinity_GG_30800_c1_g1_i6,blat.proc3825176.chain_1556,blat.proc3825176.chain_1558	4	STRG.24337.1	1
scaffold_23	starts_in_intron	5584006	5584006	+	asmbl_31588	none	Trinity_GG_31582_c0_g1_i2,blat.proc3825176.chain_2801	2	STRG.25931.1,STRG.25931.2,STRG.25931.3,STRG.25931.4,Trinity_GG_31582_c0_g1_i1,blat.proc3825176.chain_2800,blat.proc3825176.chain_2802	7
scaffold_10	retained_intron	714718	715006	-	asmbl_3986,asmbl_3990,asmbl_3991	none	STRG.11957.2,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541,blat.proc3825154.chain_545	4	STRG.11957.1,STRG.11957.3,STRG.11957.4,STRG.11957.5	4
scaffold_6	alt_donor	16448348	16448349	-	asmbl_49134	none	STRG.8373.2,blat.proc3825152.chain_807	2	STRG.8373.1,blat.proc3825152.chain_808	2
scaffold_16	alt_acceptor	290192	290193	+	asmbl_16020	none	STRG.19019.2	1	STRG.19019.1,blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	3
scaffold_3	retained_exon	11659462	11659533	+	asmbl_40370,asmbl_40371,asmbl_40374	none	STRG.3605.1,STRG.3605.5,Trinity_GG_19349_c0_g1_i3,Trinity_GG_19349_c0_g1_i4,Trinity_GG_19349_c0_g1_i7,blat.proc3825166.chain_119,blat.proc3825166.chain_123,blat.proc3825166.chain_125	8	STRG.3605.2,STRG.3605.3,STRG.3605.4,Trinity_GG_19349_c0_g1_i6,Trinity_GG_19349_c0_g1_i8,blat.proc3825166.chain_120,blat.proc3825166.chain_121,blat.proc3825166.chain_124	8
scaffold_16	retained_exon	8584929	8585014	+	asmbl_16414,asmbl_16415,asmbl_16416,asmbl_16418,asmbl_16419,asmbl_16420,asmbl_16422	none	STRG.19490.1,STRG.19490.2,STRG.19490.3,STRG.19490.4,STRG.19490.6,Trinity_GG_27967_c0_g1_i7,blat.proc3825174.chain_373,blat.proc3825174.chain_375,blat.proc3825174.chain_376,blat.proc3825174.chain_377	10	STRG.19490.5,STRG.19490.7,blat.proc3825174.chain_372,blat.proc3825174.chain_374	4
scaffold_17	skipped_exon	4186382	4188809	-	asmbl_17844	none	blat.proc3825158.chain_1220	1	STRG.20171.1,blat.proc3825158.chain_1219	2
scaffold_13	alternate_exon	10229528	10241964	-	asmbl_10053,asmbl_10054	none	STRG.16258.1,STRG.16258.3,blat.proc3825156.chain_1115,blat.proc3825156.chain_1116	4	STRG.16258.2,blat.proc3825156.chain_1118	2
scaffold_17	ends_in_intron	5129590	5129590	-	asmbl_17916	none	blat.proc3825158.chain_1303	1	STRG.20241.1,blat.proc3825158.chain_1306	2
scaffold_21	alt_acceptor	1156242	1156243	+	asmbl_28332	none	STRG.23791.1,Trinity_GG_30501_c0_g1_i1,blat.proc3825176.chain_1021	3	STRG.23791.2,Trinity_GG_30501_c0_g1_i2,blat.proc3825176.chain_1020	3
scaffold_1	alternate_exon	1324615	1324661	+	asmbl_1472	none	STRG.77.2	1	STRG.77.1,Trinity_GG_17374_c0_g1_i1,blat.proc3825164.chain_190	3
scaffold_7	alt_donor	12421148	12421149	+	asmbl_50260	none	STRG.9347.1,blat.proc3825168.chain_1864	2	STRG.9347.2,blat.proc3825168.chain_1863	2
scaffold_3	alt_acceptor	18937856	18937857	+	asmbl_40749	none	STRG.4067.3	1	STRG.4067.1,STRG.4067.2,STRG.4067.4	3
scaffold_9	skipped_exon	6919651	6920387	-	asmbl_55101	none	blat.proc3825152.chain_3450	1	STRG.11207.1,STRG.11207.2,blat.proc3825152.chain_3453,blat.proc3825152.chain_3454,blat.proc3825152.chain_3455	5
scaffold_4	starts_in_intron	16541518	16541518	-	asmbl_43192	none	blat.proc3825150.chain_1418	1	STRG.5230.1,STRG.5230.2,blat.proc3825150.chain_1419	3
scaffold_2	spliced_intron	7781346	7781544	+	asmbl_24575	none	STRG.2075.5	1	blat.proc3825164.chain_2234	1
scaffold_1	alt_donor	16744053	16744054	-	asmbl_1016	none	blat.proc3825148.chain_1167	1	STRG.1179.1,blat.proc3825148.chain_1169	2
scaffold_4	starts_in_intron	16952381	16952381	+	asmbl_42019	none	Trinity_GG_20243_c0_g1_i2	1	blat.proc3825166.chain_1643	1
scaffold_18	spliced_intron	1624835	1624863	-	asmbl_19628	none	blat.proc3825158.chain_2023	1	Trinity_GG_11795_c0_g1_i1	1
scaffold_7	alternate_exon	12542827	12542862	-	asmbl_51242	none	STRG.9363.5	1	STRG.9363.1,STRG.9363.4,blat.proc3825152.chain_1713,blat.proc3825152.chain_1717	4
scaffold_3	alt_acceptor	17845839	17845840	+	asmbl_40704,asmbl_40707	none	STRG.4004.2,STRG.4004.3,blat.proc3825166.chain_495	3	STRG.4004.1,blat.proc3825166.chain_497	2
scaffold_1	ends_in_intron	11121898	11121898	+	asmbl_2066	none	blat.proc3825164.chain_877	1	STRG.732.1,STRG.732.2,blat.proc3825164.chain_878,blat.proc3825164.chain_880	4
scaffold_13	spliced_intron	8831597	8831757	-	asmbl_9994	none	STRG.16159.1,blat.proc3825156.chain_998	2	Trinity_GG_9044_c0_g1_i2,Trinity_GG_9044_c0_g1_i3,blat.proc3825156.chain_996,blat.proc3825156.chain_999	4
scaffold_14	starts_in_intron	8215484	8215484	-	asmbl_13253	none	blat.proc3825156.chain_2058	1	STRG.17234.1,STRG.17234.2,STRG.17234.3,STRG.17234.4,STRG.17234.5,blat.proc3825156.chain_2055,blat.proc3825156.chain_2056,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	10
scaffold_9	starts_in_intron	16602304	16602304	+	asmbl_54614	none	Trinity_GG_23898_c0_g1_i1	1	STRG.11796.1,blat.proc3825170.chain_600	2
scaffold_6	starts_in_intron	16851435	16851435	-	asmbl_49160	none	blat.proc3825152.chain_859	1	STRG.8399.1,blat.proc3825152.chain_860	2
scaffold_8	spliced_intron	6161273	6161428	-	asmbl_51861,asmbl_51862,asmbl_51865,asmbl_51866,asmbl_51868,asmbl_51869,asmbl_51870	none	STRG.10030.1,STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	9	blat.proc3825152.chain_2273	1
scaffold_11	starts_in_intron	4640077	4640077	+	asmbl_5491	none	Trinity_GG_24765_c0_g1_i4,blat.proc3825170.chain_2086	2	STRG.13546.1,blat.proc3825170.chain_2087,blat.proc3825170.chain_2088	3
scaffold_5	starts_in_intron	8086587	8086587	-	asmbl_44195	none	STRG.6174.2,blat.proc3825150.chain_2335	2	STRG.6174.1,blat.proc3825150.chain_2336	2
scaffold_2	alternate_exon	7479635	7480026	-	asmbl_23269	none	STRG.2068.1,blat.proc3825148.chain_1978	2	STRG.2068.2,blat.proc3825148.chain_1979	2
scaffold_2	alternate_exon	4070311	4070469	-	asmbl_23047	none	STRG.1852.2,Trinity_GG_1029_c0_g1_i1,blat.proc3825148.chain_1831	3	STRG.1852.1,blat.proc3825148.chain_1830	2
scaffold_1150	alt_donor	1346	1347	+	asmbl_7413	none	STRG.30556.1,blat.proc3825178.chain_3564	2	STRG.30556.2	1
scaffold_11	skipped_exon	4672046	4673293	-	asmbl_6610,asmbl_6611,asmbl_6612,asmbl_6616	none	STRG.13564.2,STRG.13564.3,STRG.13564.4,blat.proc3825154.chain_2157,blat.proc3825154.chain_2158,blat.proc3825154.chain_2159	6	STRG.13564.1,STRG.13564.5,blat.proc3825154.chain_2155	3
scaffold_13	skipped_exon	6047203	6049582	-	asmbl_9765	none	STRG.15915.4,blat.proc3825156.chain_784	2	STRG.15915.1,STRG.15915.5,blat.proc3825156.chain_778,blat.proc3825156.chain_782	4
scaffold_2	retained_intron	6350944	6351046	-	asmbl_23194	none	Trinity_GG_1061_c0_g1_i2,blat.proc3825148.chain_1894	2	STRG.2001.2	1
scaffold_27	starts_in_intron	1961569	1961569	+	asmbl_36053	none	blat.proc3825178.chain_1774	1	STRG.28677.1,STRG.28677.2,blat.proc3825178.chain_1771,blat.proc3825178.chain_1772,blat.proc3825178.chain_1775	5
scaffold_6	spliced_intron	17670897	17672065	+	asmbl_47771,asmbl_47773,asmbl_47775	none	STRG.8462.2,Trinity_GG_21933_c0_g1_i2,Trinity_GG_21933_c0_g1_i5,Trinity_GG_21933_c0_g1_i7,blat.proc3825168.chain_867,blat.proc3825168.chain_869,blat.proc3825168.chain_871	7	STRG.8462.3,Trinity_GG_21933_c0_g1_i6,blat.proc3825168.chain_865,blat.proc3825168.chain_866,blat.proc3825168.chain_868	5
scaffold_7	alternate_exon	17991109	17991295	+	asmbl_50509	none	STRG.9639.3	1	STRG.9639.1,STRG.9639.2,blat.proc3825168.chain_2164	3
scaffold_15	spliced_intron	16266207	16266369	-	asmbl_14823	none	STRG.18981.1,blat.proc3825158.chain_93	2	Trinity_GG_10657_c0_g1_i2,blat.proc3825158.chain_94	2
scaffold_18	spliced_intron	1887392	1887983	-	asmbl_19655,asmbl_19656,asmbl_19663,asmbl_19664,asmbl_19665	none	STRG.21081.3,STRG.21081.7,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2014	5	STRG.21081.6	1
scaffold_14	spliced_intron	14251277	14251622	-	asmbl_13684	none	STRG.17691.1,blat.proc3825156.chain_2544	2	STRG.17691.2,Trinity_GG_9954_c0_g1_i3,blat.proc3825156.chain_2542,blat.proc3825156.chain_2543	4
scaffold_20	alt_donor	11679394	11679395	-	asmbl_26180,asmbl_26182	none	STRG.23672.1,blat.proc3825160.chain_760,blat.proc3825160.chain_761	3	STRG.23672.3,blat.proc3825160.chain_757	2
scaffold_12	alt_donor	12339623	12339624	+	asmbl_7990	none	STRG.15141.2	1	STRG.15141.1	1
scaffold_21	alternate_exon	10119142	10120323	+	asmbl_28861	none	STRG.24477.1,blat.proc3825176.chain_1624	2	STRG.24477.2,STRG.24477.3,blat.proc3825176.chain_1626	3
scaffold_24	alt_donor	5940590	5940591	+	asmbl_32251,asmbl_32261,asmbl_32262,asmbl_32264,asmbl_32266,asmbl_32268,asmbl_32272,asmbl_32273,asmbl_32275,asmbl_32276	none	STRG.26675.1,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3665,blat.proc3825176.chain_3671,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3676,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	11	STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3667,blat.proc3825176.chain_3675,blat.proc3825176.chain_3677	5
scaffold_21	alt_acceptor	11346118	11346119	-	asmbl_28122,asmbl_28123	none	STRG.24614.2,STRG.24614.3	2	STRG.24614.1	1
scaffold_5	retained_intron	1249677	1249957	-	asmbl_43848	none	blat.proc3825150.chain_1929	1	STRG.5688.1,blat.proc3825150.chain_1932,blat.proc3825150.chain_1933	3
scaffold_16	spliced_intron	12019045	12019148	+	asmbl_16625,asmbl_16626	none	STRG.19728.1,STRG.19728.3,blat.proc3825174.chain_577	3	Trinity_GG_28082_c0_g1_i1,blat.proc3825174.chain_575	2
scaffold_24	retained_intron	10778708	10778819	-	asmbl_33222	none	blat.proc3825162.chain_371	1	STRG.27043.1,blat.proc3825162.chain_367,blat.proc3825162.chain_368,blat.proc3825162.chain_369,blat.proc3825162.chain_370	5
scaffold_8	starts_in_intron	9936516	9936516	-	asmbl_52078	none	blat.proc3825152.chain_2522	1	STRG.10247.1,STRG.10247.2,blat.proc3825152.chain_2520,blat.proc3825152.chain_2521	4
scaffold_10	alt_acceptor	8335733	8335734	+	asmbl_3313	none	STRG.12594.1,Trinity_GG_24262_c0_g1_i1,blat.proc3825170.chain_1212	3	STRG.12594.2	1
scaffold_2	starts_in_intron	2544544	2544544	-	asmbl_22903	none	blat.proc3825148.chain_1646	1	STRG.1700.1,STRG.1700.2,blat.proc3825148.chain_1645,blat.proc3825148.chain_1647	4
scaffold_5	alternate_exon	15892255	15892306	+	asmbl_46030	none	STRG.6778.1	1	STRG.6778.2,STRG.6778.3,STRG.6778.4,blat.proc3825166.chain_2866,blat.proc3825166.chain_2867	5
scaffold_6	alternate_exon	14855671	14857685	-	asmbl_49038	none	STRG.8264.2,Trinity_GG_4670_c2_g1_i1,blat.proc3825152.chain_651	3	STRG.8264.3	1
scaffold_11	skipped_exon	17374271	17374612	+	asmbl_6220,asmbl_6224	none	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2882	3	blat.proc3825170.chain_2884	1
scaffold_28	alt_donor	4580997	4580998	-	asmbl_38220	none	blat.proc3825162.chain_2825	1	STRG.29636.1,STRG.29636.2,blat.proc3825162.chain_2823,blat.proc3825162.chain_2824	4
scaffold_8	skipped_exon	11572603	11573251	+	asmbl_53237	none	STRG.10354.2,Trinity_GG_23090_c0_g1_i2,blat.proc3825168.chain_2945	3	STRG.10354.1,blat.proc3825168.chain_2946	2
scaffold_7	ends_in_intron	8264053	8264053	+	asmbl_49977	none	blat.proc3825168.chain_1554	1	STRG.9061.1,blat.proc3825168.chain_1551	2
scaffold_9	starts_in_intron	6919079	6919079	-	asmbl_55098	none	blat.proc3825152.chain_3451	1	STRG.11207.1,STRG.11207.2,blat.proc3825152.chain_3450,blat.proc3825152.chain_3452,blat.proc3825152.chain_3453,blat.proc3825152.chain_3454,blat.proc3825152.chain_3455	7
scaffold_25	starts_in_intron	7944527	7944527	+	asmbl_33703	none	blat.proc3825178.chain_697	1	STRG.27625.1,blat.proc3825178.chain_698	2
scaffold_1	starts_in_intron	20345427	20345427	+	asmbl_2621	none	STRG.1396.5	1	STRG.1396.1,STRG.1396.2,STRG.1396.3,blat.proc3825164.chain_1591,blat.proc3825164.chain_1594,blat.proc3825164.chain_1596,blat.proc3825164.chain_1597	7
scaffold_6	alt_acceptor	9152067	9152068	-	asmbl_48610,asmbl_48611	none	STRG.7792.2,STRG.7792.3	2	STRG.7792.1,blat.proc3825152.chain_167,blat.proc3825152.chain_168	3
scaffold_1	alt_acceptor	3257807	3257808	+	asmbl_1584	none	blat.proc3825164.chain_322	1	STRG.205.1,STRG.205.2,Trinity_GG_17459_c0_g1_i4,blat.proc3825164.chain_319,blat.proc3825164.chain_320,blat.proc3825164.chain_321	6
scaffold_2	retained_intron	7242608	7242683	+	asmbl_24555	none	blat.proc3825164.chain_2170	1	STRG.2055.1,blat.proc3825164.chain_2169,blat.proc3825164.chain_2171,blat.proc3825164.chain_2172,blat.proc3825164.chain_2173	5
scaffold_28	ends_in_intron	7820432	7820432	-	asmbl_38419	none	Trinity_GG_16740_c0_g1_i1	1	STRG.29849.1	1
scaffold_23	ends_in_intron	3233848	3233848	-	asmbl_30788	none	Trinity_GG_14405_c1_g1_i1,blat.proc3825160.chain_2918	2	STRG.25755.1,STRG.25755.3,blat.proc3825160.chain_2917	3
scaffold_500	alt_donor	1484	1485	+	asmbl_46494	none	blat.proc3825178.chain_3434	1	STRG.30357.1,STRG.30357.3,STRG.30357.4,STRG.30357.5,STRG.30357.6,Trinity_GG_34112_c0_g1_i2,blat.proc3825178.chain_3435	7
scaffold_13	ends_in_intron	14563273	14563273	-	asmbl_10200	none	Trinity_GG_9195_c1_g2_i1,blat.proc3825156.chain_1273	2	STRG.16504.5	1
scaffold_18	alt_acceptor	4442791	4442792	+	asmbl_20519	none	STRG.21236.1,blat.proc3825174.chain_2151	2	STRG.21236.2,blat.proc3825174.chain_2153	2
scaffold_21	starts_in_intron	6639098	6639098	+	asmbl_28684	none	Trinity_GG_30736_c2_g1_i1,blat.proc3825176.chain_1444	2	STRG.24190.1,STRG.24190.2,blat.proc3825176.chain_1441	3
scaffold_5	skipped_exon	11990788	11991389	-	asmbl_44430,asmbl_44433,asmbl_44434	none	STRG.6453.8,blat.proc3825150.chain_2611,blat.proc3825150.chain_2613	3	STRG.6453.1,STRG.6453.2,STRG.6453.4,STRG.6453.5,STRG.6453.9,blat.proc3825150.chain_2612,blat.proc3825150.chain_2614,blat.proc3825150.chain_2615	8
scaffold_4	retained_intron	19524379	19524448	-	asmbl_43447	none	blat.proc3825150.chain_1644	1	STRG.5538.1,blat.proc3825150.chain_1642,blat.proc3825150.chain_1643	3
scaffold_28	alt_acceptor	2656102	2656103	-	asmbl_38070,asmbl_38071	none	STRG.29458.2,blat.proc3825162.chain_2637,blat.proc3825162.chain_2638,blat.proc3825162.chain_2639	4	STRG.29458.1	1
scaffold_6	spliced_intron	8171724	8171933	-	asmbl_48538,asmbl_48541,asmbl_48542,asmbl_48543,asmbl_48544	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_87,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93	6	blat.proc3825152.chain_86	1
scaffold_7	skipped_exon	9767491	9767994	-	asmbl_51064	none	STRG.9168.1	1	STRG.9168.2,blat.proc3825152.chain_1530	2
scaffold_12	alt_acceptor	7661362	7661363	+	asmbl_7782,asmbl_7784	none	STRG.14851.2,blat.proc3825170.chain_3403,blat.proc3825170.chain_3405,blat.proc3825170.chain_3406	4	STRG.14851.1	1
scaffold_22	ends_in_intron	11402034	11402034	+	asmbl_30376	none	Trinity_GG_31374_c0_g1_i1,blat.proc3825176.chain_2467	2	STRG.25474.1,STRG.25474.2	2
scaffold_11	alternate_exon	210583	210774	-	asmbl_6382	none	STRG.13254.1	1	STRG.13254.2	1
scaffold_25	spliced_intron	6301207	6301328	+	asmbl_33607,asmbl_33614,asmbl_33615	none	STRG.27515.2,blat.proc3825178.chain_557,blat.proc3825178.chain_558,blat.proc3825178.chain_560	4	STRG.27515.1,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_559	4
scaffold_27	ends_in_intron	6609853	6609853	-	asmbl_37069	none	blat.proc3825162.chain_2254	1	STRG.29032.1,STRG.29032.2,blat.proc3825162.chain_2253	3
scaffold_6	alt_acceptor	13230102	13230103	+	asmbl_47495,asmbl_47496,asmbl_47497,asmbl_47498,asmbl_47499,asmbl_47503,asmbl_47504,asmbl_47505,asmbl_47506,asmbl_47508,asmbl_47509	none	STRG.8084.1,STRG.8084.2,STRG.8084.3,STRG.8084.4,STRG.8084.5,STRG.8084.6,STRG.8084.8,blat.proc3825168.chain_570,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_573,blat.proc3825168.chain_574,blat.proc3825168.chain_575,blat.proc3825168.chain_576,blat.proc3825168.chain_577	15	STRG.8084.7	1
scaffold_18	skipped_exon	2087237	2087931	-	asmbl_19705	none	STRG.21108.2	1	STRG.21108.1,blat.proc3825158.chain_2025	2
scaffold_7	skipped_exon	8173018	8175492	+	asmbl_49959	none	STRG.9049.2,blat.proc3825168.chain_1535	2	STRG.9049.1,blat.proc3825168.chain_1534	2
scaffold_9	retained_intron	16561348	16562614	-	asmbl_55580	none	STRG.11806.6,Trinity_GG_6524_c1_g1_i1,blat.proc3825154.chain_277	3	STRG.11806.2,STRG.11806.3,STRG.11806.4,blat.proc3825154.chain_267,blat.proc3825154.chain_272,blat.proc3825154.chain_274	6
scaffold_14	alternate_exon	14147837	14147954	+	asmbl_12524	none	Trinity_GG_27000_c0_g1_i5,blat.proc3825172.chain_2358	2	STRG.17687.1,STRG.17687.3	2
scaffold_26	retained_intron	902781	902905	+	asmbl_34709	none	Trinity_GG_32665_c0_g1_i1,blat.proc3825178.chain_906	2	STRG.27895.1,blat.proc3825178.chain_907	2
scaffold_1	spliced_intron	9163722	9163832	-	asmbl_515,asmbl_516,asmbl_517	none	STRG.612.1,blat.proc3825148.chain_612,blat.proc3825148.chain_613	3	blat.proc3825148.chain_614	1
scaffold_15	alt_acceptor	15857501	15857502	+	asmbl_15821,asmbl_15822,asmbl_15823,asmbl_15827,asmbl_15829	none	STRG.18973.2,STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3572,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575	10	STRG.18973.1,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i5,blat.proc3825172.chain_3568,blat.proc3825172.chain_3576,blat.proc3825172.chain_3577	6
scaffold_1	alt_donor	4234166	4234167	+	asmbl_1646,asmbl_1647,asmbl_1648,asmbl_1652	none	STRG.256.1,STRG.256.2,blat.proc3825164.chain_400,blat.proc3825164.chain_401,blat.proc3825164.chain_402,blat.proc3825164.chain_403,blat.proc3825164.chain_404	7	STRG.256.3,STRG.256.4,STRG.256.5	3
scaffold_26	starts_in_intron	4137096	4137096	-	asmbl_35530,asmbl_35532	none	STRG.28116.3,blat.proc3825162.chain_1396	2	STRG.28116.4,blat.proc3825162.chain_1397	2
scaffold_9	ends_in_intron	14041829	14041829	+	asmbl_54517,asmbl_54518,asmbl_54520	none	Trinity_GG_23791_c0_g1_i3,Trinity_GG_23791_c0_g1_i4,blat.proc3825170.chain_423,blat.proc3825170.chain_424,blat.proc3825170.chain_426	5	STRG.11665.2	1
scaffold_5	retained_intron	4866969	4867162	+	asmbl_45309	none	Trinity_GG_20566_c0_g1_i1,blat.proc3825166.chain_2173	2	STRG.5946.1,STRG.5946.2,STRG.5946.3,blat.proc3825166.chain_2170,blat.proc3825166.chain_2171,blat.proc3825166.chain_2172	6
scaffold_7	starts_in_intron	10710402	10710402	+	asmbl_50143	none	blat.proc3825168.chain_1731	1	STRG.9249.1,STRG.9249.2,blat.proc3825168.chain_1733	3
scaffold_6	retained_intron	17798851	17799282	-	asmbl_49201	none	blat.proc3825152.chain_849	1	STRG.8463.1,blat.proc3825152.chain_850	2
scaffold_18	alternate_exon	6439065	6439091	-	asmbl_19902	none	STRG.21371.2	1	STRG.21371.1,blat.proc3825158.chain_2312	2
scaffold_21	retained_intron	7600965	7601224	+	asmbl_28755	none	STRG.24297.3,blat.proc3825176.chain_1517	2	STRG.24297.1,blat.proc3825176.chain_1515	2
scaffold_6	retained_intron	13726449	13726589	-	asmbl_48945	none	STRG.8122.2,blat.proc3825152.chain_513	2	STRG.8122.1,Trinity_GG_4600_c0_g1_i1,blat.proc3825152.chain_512	3
scaffold_10	spliced_intron	5010843	5010929	-	asmbl_4335	none	blat.proc3825154.chain_848	1	STRG.12327.1,blat.proc3825154.chain_847	2
scaffold_2	retained_intron	14560203	14560372	+	asmbl_24962	none	blat.proc3825164.chain_2659	1	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2651,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	12
scaffold_20	starts_in_intron	2075949	2075949	+	asmbl_26466	none	blat.proc3825176.chain_137	1	STRG.22958.1,STRG.22958.2,blat.proc3825176.chain_136	3
scaffold_27	alt_acceptor	3903535	3903536	-	asmbl_36929	none	STRG.28860.2	1	STRG.28860.1,blat.proc3825162.chain_2027	2
scaffold_27	ends_in_intron	3130347	3130347	+	asmbl_36189,asmbl_36190,asmbl_36191	none	Trinity_GG_33197_c0_g1_i3,blat.proc3825178.chain_1837,blat.proc3825178.chain_1838,blat.proc3825178.chain_1839	4	STRG.28805.3	1
scaffold_15	retained_exon	11143710	11143790	-	asmbl_14484,asmbl_14488	none	blat.proc3825156.chain_3382,blat.proc3825156.chain_3386	2	blat.proc3825156.chain_3383,blat.proc3825156.chain_3384	2
scaffold_14	alt_donor	12351231	12351232	+	asmbl_12423,asmbl_12425	none	STRG.17576.1,STRG.17576.2,blat.proc3825172.chain_2273	3	STRG.17576.3,blat.proc3825172.chain_2274	2
scaffold_17	starts_in_intron	8839518	8839518	-	asmbl_18126	none	STRG.20491.1	1	STRG.20491.2	1
scaffold_13	alt_donor	10222022	10222023	-	asmbl_10052	none	STRG.16246.2	1	STRG.16246.1,blat.proc3825156.chain_1141	2
scaffold_4	starts_in_intron	17019494	17019494	-	asmbl_43242	none	blat.proc3825150.chain_1470	1	STRG.5297.1,blat.proc3825150.chain_1469	2
scaffold_14	alt_donor	8451916	8451917	-	asmbl_13315	none	Trinity_GG_9713_c0_g1_i3	1	Trinity_GG_9713_c0_g1_i1	1
scaffold_11	alt_acceptor	6016403	6016404	+	asmbl_5601	none	STRG.13667.2,blat.proc3825170.chain_2207	2	STRG.13667.1,STRG.13667.3,blat.proc3825170.chain_2206,blat.proc3825170.chain_2208	4
scaffold_14	starts_in_intron	9930512	9930512	-	asmbl_13396	none	STRG.17363.2	1	STRG.17363.1	1
scaffold_2	alt_acceptor	16403414	16403415	+	asmbl_25138	none	blat.proc3825164.chain_2870	1	blat.proc3825164.chain_2873	1
scaffold_10	spliced_intron	6075638	6075745	-	asmbl_4422	none	STRG.12445.2,blat.proc3825154.chain_1033	2	STRG.12445.1,STRG.12445.3,blat.proc3825154.chain_1026,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1032,blat.proc3825154.chain_1034	8
scaffold_19	retained_intron	1039595	1040154	-	asmbl_22013	none	STRG.21897.1	1	STRG.21897.2	1
scaffold_6	retained_intron	18691242	18691696	+	asmbl_47842	none	Trinity_GG_22011_c0_g2_i1,blat.proc3825168.chain_1010	2	STRG.8537.1,STRG.8537.2,Trinity_GG_22011_c0_g1_i1,blat.proc3825168.chain_1009	4
scaffold_21	alt_acceptor	676034	676035	-	asmbl_27340,asmbl_27341,asmbl_27342	none	STRG.23755.3,STRG.23755.4,STRG.23755.5	3	STRG.23755.2,blat.proc3825160.chain_876	2
scaffold_1	spliced_intron	12745169	12745369	-	asmbl_749,asmbl_754	none	STRG.895.3,STRG.895.4,blat.proc3825148.chain_851	3	STRG.895.2,blat.proc3825148.chain_849	2
scaffold_16	spliced_intron	743885	744041	-	asmbl_16896,asmbl_16898,asmbl_16899,asmbl_16900,asmbl_16901,asmbl_16902	none	STRG.19055.1,blat.proc3825158.chain_184,blat.proc3825158.chain_185,blat.proc3825158.chain_186,blat.proc3825158.chain_187,blat.proc3825158.chain_188,blat.proc3825158.chain_189	7	Trinity_GG_10701_c0_g1_i2,blat.proc3825158.chain_190	2
scaffold_15	alt_donor	15569530	15569531	+	asmbl_15805	none	STRG.18949.1,Trinity_GG_27695_c0_g1_i1,blat.proc3825172.chain_3593	3	STRG.18949.2,blat.proc3825172.chain_3592	2
scaffold_8	alternate_exon	10144865	10144904	+	asmbl_53149	none	blat.proc3825168.chain_2828	1	STRG.10270.1,Trinity_GG_23020_c0_g1_i2,blat.proc3825168.chain_2829	3
scaffold_1	skipped_exon	11745095	11746185	+	asmbl_2141	none	STRG.789.2,blat.proc3825164.chain_970	2	STRG.789.1,blat.proc3825164.chain_973	2
scaffold_15	retained_exon	1961658	1961770	+	asmbl_15040	none	STRG.17992.2	1	STRG.17992.1	1
scaffold_14	alt_acceptor	3142235	3142236	+	asmbl_11904	none	STRG.16905.1,Trinity_GG_26603_c0_g1_i2,blat.proc3825172.chain_1672	3	Trinity_GG_26603_c0_g1_i3,blat.proc3825172.chain_1671	2
scaffold_22	alt_acceptor	25406	25407	+	asmbl_29797,asmbl_29798	none	STRG.24662.1,STRG.24662.2,Trinity_GG_30926_c0_g1_i1,Trinity_GG_30926_c0_g1_i4,blat.proc3825176.chain_1754,blat.proc3825176.chain_1756	6	Trinity_GG_30926_c0_g1_i2,blat.proc3825176.chain_1755	2
scaffold_8	alternate_exon	10006392	10006518	+	asmbl_53137	none	STRG.10257.1	1	STRG.10257.2	1
scaffold_1	starts_in_intron	6833275	6833275	-	asmbl_389	none	blat.proc3825148.chain_467	1	STRG.471.1,blat.proc3825148.chain_468	2
scaffold_9	alt_acceptor	17833626	17833627	+	asmbl_54650	none	STRG.11868.2	1	STRG.11868.1	1
scaffold_7	alt_acceptor	8711884	8711885	-	asmbl_51034	none	STRG.9112.1	1	STRG.9112.2,blat.proc3825152.chain_1504	2
scaffold_1	alt_acceptor	4239037	4239038	+	asmbl_1648	none	blat.proc3825164.chain_402	1	STRG.256.3,STRG.256.5,blat.proc3825164.chain_401	3
scaffold_19	alternate_exon	3671441	3672204	-	asmbl_22116,asmbl_22122	none	STRG.22046.1,Trinity_GG_12309_c0_g1_i1,blat.proc3825158.chain_2893,blat.proc3825158.chain_2898	4	STRG.22046.2,Trinity_GG_12309_c0_g1_i3,blat.proc3825158.chain_2897	3
scaffold_14	alternate_exon	8216524	8216958	-	asmbl_13257	none	STRG.17234.3	1	STRG.17234.4,STRG.17234.5	2
scaffold_13	retained_exon	13973710	13973738	+	asmbl_11415,asmbl_11416	none	blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	2	blat.proc3825172.chain_1171	1
scaffold_5	spliced_intron	17368979	17369287	-	asmbl_44803	none	STRG.6915.1,blat.proc3825150.chain_3019	2	STRG.6915.2,Trinity_GG_3837_c0_g1_i1,blat.proc3825150.chain_3020	3
scaffold_2	retained_intron	8059380	8059478	-	asmbl_23308	none	STRG.2093.1,Trinity_GG_1159_c0_g1_i1,blat.proc3825148.chain_2110	3	STRG.2093.3	1
scaffold_13	spliced_intron	8955354	8955451	+	asmbl_11163,asmbl_11164,asmbl_11167,asmbl_11168	none	STRG.16167.1,STRG.16167.2,STRG.16167.3,blat.proc3825172.chain_869,blat.proc3825172.chain_870,blat.proc3825172.chain_871	6	blat.proc3825172.chain_867,blat.proc3825172.chain_868	2
scaffold_24	retained_intron	9121547	9121853	+	asmbl_32518	none	blat.proc3825178.chain_98	1	STRG.26939.1,Trinity_GG_32182_c0_g1_i4,blat.proc3825178.chain_95	3
scaffold_17	alt_acceptor	1291368	1291369	-	asmbl_17683	none	blat.proc3825158.chain_972	1	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_973,blat.proc3825158.chain_975	4
scaffold_3	alt_acceptor	7927365	7927366	+	asmbl_40184	none	STRG.3380.1	1	STRG.3380.2	1
scaffold_11	spliced_intron	16755265	16755293	+	asmbl_6174	none	STRG.14369.1	1	Trinity_GG_25225_c0_g1_i1,blat.proc3825170.chain_2899	2
scaffold_6	ends_in_intron	12077751	12077751	-	asmbl_48790	none	Trinity_GG_4531_c1_g1_i2,blat.proc3825152.chain_371	2	STRG.7982.1,Trinity_GG_4531_c1_g1_i1,blat.proc3825152.chain_372	3
scaffold_21	retained_intron	7424823	7425004	-	asmbl_27808	none	blat.proc3825160.chain_1443	1	STRG.24271.2,blat.proc3825160.chain_1444,blat.proc3825160.chain_1445,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	5
scaffold_7	alt_acceptor	18350738	18350739	-	asmbl_51459,asmbl_51460	none	STRG.9663.2,STRG.9663.3	2	STRG.9663.1	1
scaffold_4	retained_intron	4121588	4121687	-	asmbl_42497,asmbl_42499	none	STRG.4329.3,Trinity_GG_2440_c0_g1_i3,blat.proc3825150.chain_595	3	STRG.4329.2,blat.proc3825150.chain_594	2
scaffold_10	alt_acceptor	9375921	9375922	+	asmbl_3373	none	blat.proc3825170.chain_1255	1	STRG.12676.1,blat.proc3825170.chain_1253,blat.proc3825170.chain_1254	3
scaffold_28	spliced_intron	5234854	5235055	-	asmbl_38267,asmbl_38268,asmbl_38271,asmbl_38272,asmbl_38273,asmbl_38274	none	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2780,blat.proc3825162.chain_2781,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2786,blat.proc3825162.chain_2787	8	Trinity_GG_16598_c0_g1_i7,blat.proc3825162.chain_2779	2
scaffold_1	alt_acceptor	5731990	5731991	-	asmbl_292	none	blat.proc3825148.chain_359	1	STRG.388.1,STRG.388.2,blat.proc3825148.chain_360,blat.proc3825148.chain_361	4
scaffold_14	alt_donor	6367794	6367795	+	asmbl_12071	none	STRG.17085.2,blat.proc3825172.chain_1854	2	STRG.17085.1,STRG.17085.3,blat.proc3825172.chain_1855,blat.proc3825172.chain_1856	4
scaffold_21	alt_donor	1174735	1174736	-	asmbl_27386,asmbl_27387	none	STRG.23795.1,STRG.23795.2,Trinity_GG_13264_c0_g1_i2,Trinity_GG_13264_c0_g1_i3,blat.proc3825160.chain_929,blat.proc3825160.chain_930	6	STRG.23795.3	1
scaffold_20	starts_in_intron	5906502	5906502	+	asmbl_26643	none	blat.proc3825176.chain_383	1	STRG.23195.1,blat.proc3825176.chain_382	2
scaffold_24	alt_acceptor	9952399	9952400	-	asmbl_33155,asmbl_33157,asmbl_33161,asmbl_33162	none	STRG.26968.6,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_275	4	STRG.26968.1,STRG.26968.2,Trinity_GG_15063_c0_g1_i3,blat.proc3825162.chain_273,blat.proc3825162.chain_274	5
scaffold_24	alternate_exon	2962922	2963249	-	asmbl_32807	none	Trinity_GG_14797_c0_g1_i2,blat.proc3825160.chain_3587	2	STRG.26507.2	1
scaffold_22	alternate_exon	232031	232213	-	asmbl_29074,asmbl_29078,asmbl_29082	none	STRG.24683.2,STRG.24683.3,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	4	STRG.24683.1,STRG.24683.4,STRG.24683.5,blat.proc3825160.chain_1903,blat.proc3825160.chain_1904,blat.proc3825160.chain_1905	6
scaffold_2	ends_in_intron	8777258	8777258	-	asmbl_23331	none	STRG.2134.2,Trinity_GG_1147_c1_g1_i1,blat.proc3825148.chain_2085	3	STRG.2134.1,blat.proc3825148.chain_2081,blat.proc3825148.chain_2083	3
scaffold_1	alternate_exon	16712197	16713438	-	asmbl_1009,asmbl_1010,asmbl_1011,asmbl_1012	none	STRG.1177.1,STRG.1177.2,STRG.1177.3,STRG.1177.4,Trinity_GG_600_c0_g1_i1,blat.proc3825148.chain_1083,blat.proc3825148.chain_1084,blat.proc3825148.chain_1152	8	Trinity_GG_569_c0_g1_i3,blat.proc3825148.chain_1082	2
scaffold_5	alt_acceptor	11643338	11643339	+	asmbl_45756	none	STRG.6426.1	1	STRG.6426.2,blat.proc3825166.chain_2586	2
scaffold_14	retained_intron	11572188	11573625	-	asmbl_13496,asmbl_13497,asmbl_13498	none	STRG.17499.1,STRG.17499.3,STRG.17499.4,Trinity_GG_9808_c0_g1_i5	4	STRG.17499.2,blat.proc3825156.chain_2304	2
scaffold_550	alt_acceptor	1331	1332	+	asmbl_46560,asmbl_46562	none	STRG.30372.2,blat.proc3825178.chain_3462	2	STRG.30372.1,blat.proc3825178.chain_3461	2
scaffold_11	spliced_intron	9281871	9282068	+	asmbl_5885,asmbl_5886	none	STRG.13971.1,Trinity_GG_25028_c0_g1_i2,blat.proc3825170.chain_2544	3	STRG.13971.2,Trinity_GG_25028_c0_g1_i1,blat.proc3825170.chain_2543	3
scaffold_6	spliced_intron	8172579	8172828	-	asmbl_48538,asmbl_48543,asmbl_48544,asmbl_48545	none	STRG.7706.1,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_91,blat.proc3825152.chain_92	5	Trinity_GG_4351_c0_g1_i7,blat.proc3825152.chain_84,blat.proc3825152.chain_89	3
scaffold_12	alt_donor	14882852	14882853	+	asmbl_8092	none	STRG.15273.2,Trinity_GG_25690_c0_g1_i1,blat.proc3825170.chain_3712	3	STRG.15273.1,STRG.15273.3,blat.proc3825170.chain_3713	3
scaffold_12	alternate_exon	10611616	10611668	+	asmbl_7951	none	STRG.15044.3,Trinity_GG_25597_c0_g1_i2,blat.proc3825170.chain_3549	3	STRG.15044.1,blat.proc3825170.chain_3550	2
scaffold_8	alternate_exon	16505854	16506374	-	asmbl_52416	none	blat.proc3825152.chain_2934	1	STRG.10629.5	1
scaffold_13	alternate_exon	15637557	15638003	+	asmbl_11522	none	STRG.16607.2	1	STRG.16607.1,blat.proc3825172.chain_1408	2
scaffold_26	spliced_intron	6660908	6661271	+	asmbl_35097,asmbl_35099	none	STRG.28376.1,blat.proc3825178.chain_1443,blat.proc3825178.chain_1445	3	Trinity_GG_32983_c0_g1_i5,blat.proc3825178.chain_1444,blat.proc3825178.chain_1447	3
scaffold_20	skipped_exon	11085396	11086338	-	asmbl_26137	none	STRG.23625.2,Trinity_GG_13173_c0_g1_i3,blat.proc3825160.chain_727	3	STRG.23625.1,Trinity_GG_13173_c0_g1_i1,Trinity_GG_13173_c0_g1_i2,blat.proc3825160.chain_725,blat.proc3825160.chain_726	5
scaffold_11	alt_acceptor	6073278	6073279	+	asmbl_5605,asmbl_5607	none	STRG.13670.1,STRG.13670.2,blat.proc3825170.chain_2150	3	STRG.13670.3	1
scaffold_5	retained_exon	16844385	16844647	-	asmbl_44781	none	STRG.6872.3,blat.proc3825150.chain_2984	2	STRG.6872.1,blat.proc3825150.chain_2985	2
scaffold_6	starts_in_intron	3036911	3036911	-	asmbl_48216	none	blat.proc3825150.chain_3442	1	STRG.7312.1,blat.proc3825150.chain_3441	2
scaffold_20	starts_in_intron	9498933	9498933	+	asmbl_26855	none	blat.proc3825176.chain_632	1	STRG.23489.1,STRG.23489.2,blat.proc3825176.chain_633,blat.proc3825176.chain_634	4
scaffold_24	spliced_intron	8736585	8736696	-	asmbl_33097,asmbl_33099,asmbl_33100	none	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_184	4	Trinity_GG_15007_c0_g1_i6,blat.proc3825162.chain_185	2
scaffold_25	skipped_exon	637428	638058	-	asmbl_33994	none	STRG.27114.2,blat.proc3825162.chain_464	2	STRG.27114.3	1
scaffold_18	spliced_intron	8865798	8865880	-	asmbl_20025,asmbl_20027,asmbl_20028,asmbl_20030,asmbl_20031	none	STRG.21549.1,STRG.21549.2,blat.proc3825158.chain_2354,blat.proc3825158.chain_2358,blat.proc3825158.chain_2359,blat.proc3825158.chain_2361	6	blat.proc3825158.chain_2355,blat.proc3825158.chain_2360,blat.proc3825158.chain_2362	3
scaffold_28	alternate_exon	2638965	2639612	+	asmbl_37392	none	STRG.29439.1,blat.proc3825178.chain_2614	2	STRG.29439.2,STRG.29439.3,Trinity_GG_33632_c0_g1_i1,Trinity_GG_33632_c0_g1_i3,blat.proc3825178.chain_2615,blat.proc3825178.chain_2616	6
scaffold_8	ends_in_intron	4830562	4830562	-	asmbl_51806,asmbl_51807	none	blat.proc3825152.chain_2168,blat.proc3825152.chain_2169	2	STRG.9947.1,STRG.9947.2,blat.proc3825152.chain_2166,blat.proc3825152.chain_2167	4
scaffold_15	alternate_exon	15353552	15353700	+	asmbl_15762	none	STRG.18922.3	1	STRG.18922.1,STRG.18922.2,blat.proc3825172.chain_3563,blat.proc3825172.chain_3564,blat.proc3825172.chain_3566	5
scaffold_26	retained_intron	5945002	5945154	-	asmbl_35651	none	STRG.28306.1,Trinity_GG_15823_c1_g1_i2,blat.proc3825162.chain_1510	3	STRG.28306.2,Trinity_GG_15823_c1_g1_i1,blat.proc3825162.chain_1511	3
scaffold_6	alt_acceptor	12521078	12521079	-	asmbl_48814	none	STRG.8011.1,blat.proc3825152.chain_397	2	STRG.8011.2,STRG.8011.4,blat.proc3825152.chain_396,blat.proc3825152.chain_398	4
scaffold_3	spliced_intron	5260258	5260560	-	asmbl_38841,asmbl_38842,asmbl_38843	none	STRG.3218.1,Trinity_GG_1739_c0_g1_i3,Trinity_GG_1739_c0_g1_i5,blat.proc3825148.chain_3053,blat.proc3825148.chain_3055,blat.proc3825148.chain_3056	6	Trinity_GG_1739_c0_g1_i1,blat.proc3825148.chain_3052	2
scaffold_3	alternate_exon	12042935	12043488	-	asmbl_39199,asmbl_39201	none	STRG.3626.1,Trinity_GG_1980_c0_g1_i2,blat.proc3825148.chain_3499,blat.proc3825148.chain_3501	4	STRG.3626.2,STRG.3626.3,blat.proc3825148.chain_3500	3
scaffold_8	retained_intron	11744324	11744678	+	asmbl_53258	none	STRG.10377.2,blat.proc3825168.chain_2856	2	STRG.10377.1,blat.proc3825168.chain_2857	2
scaffold_19	spliced_intron	11481673	11481887	-	asmbl_22403,asmbl_22404,asmbl_22409,asmbl_22414	none	STRG.22486.1,STRG.22486.2,STRG.22486.3,blat.proc3825158.chain_3243,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	7	Trinity_GG_12512_c0_g1_i12,blat.proc3825158.chain_3242	2
scaffold_2	alt_donor	4006910	4006911	-	asmbl_23033	none	STRG.1838.1,Trinity_GG_1019_c0_g1_i1,blat.proc3825148.chain_1809	3	STRG.1838.2	1
scaffold_3	alt_acceptor	947655	947656	-	asmbl_38688	none	STRG.2918.1	1	blat.proc3825148.chain_2841	1
scaffold_2	alt_donor	17479006	17479007	-	asmbl_23727	none	STRG.2634.3	1	STRG.2634.1,STRG.2634.2,Trinity_GG_1445_c1_g1_i2,blat.proc3825148.chain_2587	4
scaffold_6	starts_in_intron	4924924	4924924	-	asmbl_48371	none	blat.proc3825150.chain_3592	1	STRG.7468.1,STRG.7468.2,blat.proc3825150.chain_3591,blat.proc3825150.chain_3593	4
scaffold_3	retained_intron	17535333	17535434	-	asmbl_39569,asmbl_39572	none	STRG.3989.2,blat.proc3825150.chain_192,blat.proc3825150.chain_194	3	STRG.3989.1,STRG.3989.3,blat.proc3825150.chain_193,blat.proc3825150.chain_195	4
scaffold_7	spliced_intron	1235897	1236477	+	asmbl_49601	none	Trinity_GG_22033_c0_g1_i15	1	STRG.8637.2	1
scaffold_15	alt_acceptor	15447514	15447515	+	asmbl_15795	none	STRG.18935.2	1	STRG.18935.1,Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i4,Trinity_GG_27706_c0_g1_i5,blat.proc3825172.chain_3619,blat.proc3825172.chain_3620,blat.proc3825172.chain_3624,blat.proc3825172.chain_3626	8
scaffold_7	alt_donor	16155251	16155252	+	asmbl_50467,asmbl_50468	none	STRG.9579.1,STRG.9579.3,Trinity_GG_22634_c0_g1_i2,blat.proc3825168.chain_2117	4	STRG.9579.2,Trinity_GG_22634_c0_g1_i1,blat.proc3825168.chain_2118	3
scaffold_1	spliced_intron	14274324	14274482	+	asmbl_2363	none	STRG.1023.1,blat.proc3825164.chain_1208	2	STRG.1023.2,blat.proc3825164.chain_1209,blat.proc3825164.chain_1210	3
scaffold_13	alternate_exon	9328290	9328370	-	asmbl_10021	none	blat.proc3825156.chain_1013	1	STRG.16199.1	1
scaffold_17	alt_donor	7855544	7855545	-	asmbl_18063	none	STRG.20413.2	1	STRG.20413.1,Trinity_GG_11480_c0_g1_i1,blat.proc3825158.chain_1453	3
scaffold_1	starts_in_intron	6281208	6281208	-	asmbl_340,asmbl_343	none	STRG.423.4,blat.proc3825148.chain_409	2	STRG.423.1,STRG.423.2,STRG.423.3,blat.proc3825148.chain_410,blat.proc3825148.chain_411,blat.proc3825148.chain_412,blat.proc3825148.chain_414,blat.proc3825148.chain_415,blat.proc3825148.chain_418	9
scaffold_2	alt_acceptor	4243847	4243848	-	asmbl_23054	none	STRG.1859.2,blat.proc3825148.chain_1781	2	STRG.1859.1,blat.proc3825148.chain_1780	2
scaffold_19	spliced_intron	11578071	11578294	-	asmbl_22428	none	STRG.22501.2	1	STRG.22501.1,blat.proc3825158.chain_3274	2
scaffold_1	alternate_exon	11424272	11424356	+	asmbl_2106	none	STRG.751.2	1	STRG.751.1,blat.proc3825164.chain_894	2
scaffold_7	retained_exon	4873996	4874087	+	asmbl_49751	none	blat.proc3825168.chain_1295	1	STRG.8833.1,blat.proc3825168.chain_1296	2
scaffold_13	alt_acceptor	354775	354776	-	asmbl_9300,asmbl_9302,asmbl_9303,asmbl_9304	none	STRG.15440.1,Trinity_GG_8667_c0_g1_i11,Trinity_GG_8667_c0_g1_i7,Trinity_GG_8667_c0_g1_i9,blat.proc3825156.chain_305,blat.proc3825156.chain_308,blat.proc3825156.chain_309,blat.proc3825156.chain_311	8	Trinity_GG_8667_c0_g1_i6,blat.proc3825156.chain_307	2
scaffold_27	alt_donor	5671484	5671485	-	asmbl_37013	none	STRG.28975.1,blat.proc3825162.chain_2153	2	blat.proc3825162.chain_2152	1
scaffold_1	starts_in_intron	14623877	14623877	+	asmbl_2410,asmbl_2411	none	STRG.1064.2,blat.proc3825164.chain_1234	2	STRG.1064.1,blat.proc3825164.chain_1235	2
scaffold_5	spliced_intron	10296210	10296333	-	asmbl_44337,asmbl_44341,asmbl_44342	none	STRG.6332.1,STRG.6332.2,blat.proc3825150.chain_2558,blat.proc3825150.chain_2559	4	blat.proc3825150.chain_2557	1
scaffold_2	spliced_intron	2542873	2542935	-	asmbl_22901,asmbl_22902	none	STRG.1700.2,STRG.1700.3	2	STRG.1700.1,blat.proc3825148.chain_1645,blat.proc3825148.chain_1646	3
scaffold_4	starts_in_intron	5652744	5652744	-	asmbl_42627,asmbl_42628	none	blat.proc3825150.chain_664,blat.proc3825150.chain_667	2	STRG.4472.1,STRG.4472.2,STRG.4472.3,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_657,blat.proc3825150.chain_658,blat.proc3825150.chain_659,blat.proc3825150.chain_662,blat.proc3825150.chain_663,blat.proc3825150.chain_666	12
scaffold_7	retained_intron	6654846	6655304	-	asmbl_50929	none	STRG.8943.2,Trinity_GG_5086_c0_g1_i5,blat.proc3825152.chain_1404,blat.proc3825152.chain_1406	4	STRG.8943.1,blat.proc3825152.chain_1403,blat.proc3825152.chain_1407	3
scaffold_15	alt_acceptor	8619332	8619333	+	asmbl_15340	none	STRG.18409.2,blat.proc3825172.chain_3043	2	STRG.18409.1,blat.proc3825172.chain_3042,blat.proc3825172.chain_3044	3
scaffold_2	spliced_intron	16101801	16102006	-	asmbl_23676	none	STRG.2551.1,blat.proc3825148.chain_2443	2	Trinity_GG_1350_c0_g1_i1,blat.proc3825148.chain_2442	2
scaffold_13	retained_intron	7934786	7934861	-	asmbl_9917,asmbl_9918	none	STRG.16070.3,blat.proc3825156.chain_878	2	STRG.16070.1,STRG.16070.2,STRG.16070.4,blat.proc3825156.chain_874,blat.proc3825156.chain_875,blat.proc3825156.chain_876,blat.proc3825156.chain_877	7
scaffold_1	starts_in_intron	18486118	18486118	-	asmbl_1114,asmbl_1115	none	STRG.1298.1,STRG.1298.5	2	STRG.1298.2,STRG.1298.3,STRG.1298.4,blat.proc3825148.chain_1320,blat.proc3825148.chain_1321,blat.proc3825148.chain_1322	6
scaffold_7	retained_intron	7493241	7494424	-	asmbl_50941	none	STRG.9005.1,blat.proc3825152.chain_1413	2	STRG.9005.2	1
scaffold_13	spliced_intron	15672407	15672426	+	asmbl_11526	none	STRG.16612.3	1	STRG.16612.1	1
scaffold_11	retained_intron	8100073	8100172	+	asmbl_5725,asmbl_5726	none	Trinity_GG_24917_c0_g1_i2,Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342,blat.proc3825170.chain_2345	4	STRG.13822.1,STRG.13822.2,STRG.13822.3,STRG.13822.4,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	12
scaffold_14	spliced_intron	15453964	15454004	-	asmbl_13727	none	STRG.17777.2	1	STRG.17777.1	1
scaffold_4	retained_intron	13416104	13416213	+	asmbl_41792,asmbl_41793	none	blat.proc3825166.chain_1335,blat.proc3825166.chain_1337	2	STRG.4977.1,STRG.4977.2,STRG.4977.3,blat.proc3825166.chain_1334,blat.proc3825166.chain_1336	5
scaffold_15	spliced_intron	15188079	15189525	+	asmbl_15729	none	blat.proc3825172.chain_3530	1	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	6
scaffold_28	alt_acceptor	5580934	5580935	+	asmbl_37592,asmbl_37594	none	STRG.29692.1,Trinity_GG_33772_c0_g1_i4,Trinity_GG_33772_c0_g1_i5,blat.proc3825178.chain_2878,blat.proc3825178.chain_2879	5	STRG.29692.2,Trinity_GG_33772_c0_g1_i2,blat.proc3825178.chain_2876	3
scaffold_24	starts_in_intron	5947887	5947887	+	asmbl_32253	none	Trinity_GG_32084_c0_g1_i11,blat.proc3825176.chain_3673	2	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	12
scaffold_8	alt_donor	16576572	16576573	-	asmbl_52429,asmbl_52430	none	STRG.10634.1,blat.proc3825152.chain_2879,blat.proc3825152.chain_2880	3	STRG.10634.2	1
scaffold_2	starts_in_intron	19290944	19290944	-	asmbl_23860	none	blat.proc3825148.chain_2688,blat.proc3825148.chain_2691	2	STRG.2798.1,STRG.2798.2,blat.proc3825148.chain_2685,blat.proc3825148.chain_2690	4
scaffold_17	retained_intron	8880820	8880901	+	asmbl_19042	none	Trinity_GG_28545_c0_g1_i3,blat.proc3825174.chain_1360	2	STRG.20508.1,blat.proc3825174.chain_1359	2
scaffold_2	alt_donor	16861216	16861217	+	asmbl_25147	none	STRG.2602.2,blat.proc3825164.chain_2902	2	STRG.2602.1,blat.proc3825164.chain_2898	2
scaffold_14	spliced_intron	15468155	15468287	+	asmbl_12597	none	STRG.17780.2	1	STRG.17780.1	1
scaffold_8	alternate_exon	16227552	16227792	+	asmbl_53435,asmbl_53439	none	STRG.10614.1,Trinity_GG_23224_c0_g1_i3,blat.proc3825168.chain_3186	3	STRG.10614.2,Trinity_GG_23224_c0_g1_i2,blat.proc3825168.chain_3188	3
scaffold_23	retained_intron	7281701	7281793	-	asmbl_31022,asmbl_31024	none	STRG.26052.1,blat.proc3825160.chain_3144,blat.proc3825160.chain_3145	3	STRG.26052.3	1
scaffold_9	alternate_exon	4831187	4831462	-	asmbl_54976	none	STRG.11059.1,blat.proc3825152.chain_3305	2	STRG.11059.2	1
scaffold_12	alt_donor	16729936	16729937	-	asmbl_9142	none	STRG.15418.2,Trinity_GG_8621_c0_g1_i5,blat.proc3825156.chain_221	3	STRG.15418.1,Trinity_GG_8621_c0_g1_i1,blat.proc3825156.chain_220	3
scaffold_11	alternate_exon	16255929	16256272	+	asmbl_6145	none	STRG.14327.2	1	STRG.14327.3	1
scaffold_12	alt_donor	14171816	14171817	+	asmbl_8065,asmbl_8067,asmbl_8068	none	STRG.15252.1,blat.proc3825172.chain_2,blat.proc3825172.chain_4,blat.proc3825172.chain_6	4	STRG.15252.2,blat.proc3825172.chain_3	2
scaffold_11	alt_acceptor	11935100	11935101	-	asmbl_7042,asmbl_7043	none	STRG.14177.2,STRG.14177.3	2	STRG.14177.4	1
scaffold_3	retained_exon	13424031	13424799	-	asmbl_39262,asmbl_39265	none	STRG.3693.3,blat.proc3825148.chain_3585	2	STRG.3693.2,blat.proc3825148.chain_3583	2
scaffold_24	retained_intron	1078652	1078823	+	asmbl_32068	none	STRG.26383.2,blat.proc3825176.chain_3363	2	STRG.26383.3,blat.proc3825176.chain_3365	2
scaffold_2	ends_in_intron	5983748	5983748	-	asmbl_23170	none	Trinity_GG_1095_c0_g1_i2,blat.proc3825148.chain_1974	2	STRG.1978.1,blat.proc3825148.chain_1973	2
scaffold_15	retained_intron	5835875	5836379	+	asmbl_15227	none	STRG.18265.1,Trinity_GG_27323_c0_g1_i1,blat.proc3825172.chain_2931	3	Trinity_GG_27323_c0_g2_i1,blat.proc3825172.chain_2932	2
scaffold_27	starts_in_intron	2793654	2793654	+	asmbl_36112	none	Trinity_GG_33228_c1_g1_i2,blat.proc3825178.chain_1918	2	STRG.28760.1,blat.proc3825178.chain_1914,blat.proc3825178.chain_1916	3
scaffold_20	retained_intron	2137292	2137342	+	asmbl_26474	none	STRG.22952.2,Trinity_GG_29964_c1_g1_i1,blat.proc3825176.chain_145	3	STRG.22952.1	1
scaffold_18	spliced_intron	1862675	1862768	-	asmbl_19648,asmbl_19649	none	STRG.21074.2,STRG.21074.3,blat.proc3825158.chain_1998	3	STRG.21074.1,blat.proc3825158.chain_1999	2
scaffold_22	skipped_exon	9157307	9158488	-	asmbl_29518,asmbl_29521	none	STRG.25251.2,Trinity_GG_14095_c0_g1_i2,blat.proc3825160.chain_2364	3	STRG.25251.1,blat.proc3825160.chain_2365	2
scaffold_3	alt_acceptor	7917853	7917854	-	asmbl_38998,asmbl_39000	none	STRG.3377.1,STRG.3377.4	2	STRG.3377.2,STRG.3377.3	2
scaffold_20	retained_intron	11078653	11078744	-	asmbl_26133,asmbl_26135	none	blat.proc3825160.chain_591,blat.proc3825160.chain_593	2	STRG.23624.1,blat.proc3825160.chain_592,blat.proc3825160.chain_594	3
scaffold_21	starts_in_intron	3727317	3727317	-	asmbl_27530,asmbl_27532	none	STRG.23962.3,blat.proc3825160.chain_1088	2	STRG.23962.1,STRG.23962.2,blat.proc3825160.chain_1089,blat.proc3825160.chain_1091	4
scaffold_6	alt_acceptor	2681833	2681834	-	asmbl_48145	none	STRG.7261.2	1	STRG.7261.1,blat.proc3825150.chain_3375	2
scaffold_6	alternate_exon	6466567	6466641	-	asmbl_48454	none	STRG.7568.2,Trinity_GG_4285_c0_g1_i1,blat.proc3825150.chain_3745	3	STRG.7568.1	1
scaffold_22	spliced_intron	6128541	6128687	+	asmbl_30100	none	STRG.24968.7	1	STRG.24968.6,Trinity_GG_31147_c1_g2_i1,blat.proc3825176.chain_2133	3
scaffold_24	alternate_exon	10483049	10484016	+	asmbl_32569	none	STRG.27018.4	1	STRG.27018.1,STRG.27018.2,STRG.27018.3,Trinity_GG_32229_c4_g1_i1,blat.proc3825178.chain_204,blat.proc3825178.chain_205,blat.proc3825178.chain_208	7
scaffold_6	spliced_intron	10958023	10958151	-	asmbl_48725	none	STRG.7913.1,blat.proc3825152.chain_306	2	blat.proc3825152.chain_307	1
scaffold_1	alternate_exon	920505	921842	+	asmbl_1441	none	STRG.49.3,Trinity_GG_17320_c0_g1_i6,blat.proc3825164.chain_83	3	STRG.49.4,blat.proc3825164.chain_87	2
scaffold_1	alt_donor	5727343	5727344	-	asmbl_288	none	STRG.386.1,blat.proc3825148.chain_369,blat.proc3825148.chain_370,blat.proc3825148.chain_371	4	STRG.386.2	1
scaffold_5	alternate_exon	6325777	6325804	+	asmbl_45423	none	STRG.6044.3	1	STRG.6044.1	1
scaffold_8	alt_acceptor	9872480	9872481	-	asmbl_52059	none	STRG.10234.2	1	STRG.10234.1,blat.proc3825152.chain_2490	2
scaffold_1	alt_acceptor	14259745	14259746	-	asmbl_879	none	blat.proc3825148.chain_1019	1	STRG.1019.1,blat.proc3825148.chain_1018	2
scaffold_19	spliced_intron	7701981	7702197	+	asmbl_21488,asmbl_21489,asmbl_21492	none	STRG.22255.1,STRG.22255.2,STRG.22255.3,blat.proc3825174.chain_3256	4	blat.proc3825174.chain_3257	1
scaffold_3	alternate_exon	10302271	10302499	+	asmbl_40263	none	Trinity_GG_19250_c1_g1_i3,blat.proc3825164.chain_3698	2	STRG.3476.1,STRG.3476.2,Trinity_GG_19250_c1_g1_i1,Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700,blat.proc3825164.chain_3702	6
scaffold_6	alt_acceptor	11482899	11482900	+	asmbl_47326,asmbl_47327,asmbl_47331,asmbl_47333	none	STRG.7943.1,STRG.7943.2,STRG.7943.4,blat.proc3825168.chain_309,blat.proc3825168.chain_312,blat.proc3825168.chain_314	6	STRG.7943.3,blat.proc3825168.chain_310	2
scaffold_1	starts_in_intron	11947746	11947746	+	asmbl_2174	none	Trinity_GG_17805_c0_g1_i2,blat.proc3825164.chain_956	2	STRG.815.1,blat.proc3825164.chain_955	2
scaffold_11	alt_acceptor	17374181	17374182	+	asmbl_6220,asmbl_6223	none	STRG.14402.2,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	3	STRG.14402.1	1
scaffold_21	spliced_intron	4948171	4948378	+	asmbl_28543	none	STRG.24045.1,blat.proc3825176.chain_1196	2	STRG.24045.2,blat.proc3825176.chain_1197	2
scaffold_16	starts_in_intron	13218554	13218554	+	asmbl_16654	none	Trinity_GG_28158_c0_g1_i4,blat.proc3825174.chain_697	2	STRG.19781.1,STRG.19781.2,STRG.19781.3,blat.proc3825174.chain_692,blat.proc3825174.chain_693,blat.proc3825174.chain_694,blat.proc3825174.chain_695	7
scaffold_4	alt_donor	6283377	6283378	-	asmbl_42666,asmbl_42667,asmbl_42669,asmbl_42671,asmbl_42672	none	STRG.4498.1,STRG.4498.2,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778,blat.proc3825150.chain_780	12	STRG.4498.3,Trinity_GG_2543_c0_g1_i1,blat.proc3825150.chain_779	3
scaffold_6	alt_donor	12888466	12888467	+	asmbl_47440	none	STRG.8047.1,blat.proc3825168.chain_489	2	STRG.8047.2	1
scaffold_13	alt_donor	13273379	13273380	+	asmbl_11381	none	STRG.16399.1,blat.proc3825172.chain_1206	2	STRG.16399.2	1
scaffold_10	starts_in_intron	6870532	6870532	-	asmbl_4507	none	blat.proc3825154.chain_1146	1	STRG.12511.1,blat.proc3825154.chain_1139,blat.proc3825154.chain_1142,blat.proc3825154.chain_1143,blat.proc3825154.chain_1144,blat.proc3825154.chain_1145,blat.proc3825154.chain_1147	7
scaffold_21	starts_in_intron	5599697	5599697	-	asmbl_27680	none	blat.proc3825160.chain_1257	1	STRG.24095.1,blat.proc3825160.chain_1255	2
scaffold_21	alt_donor	1302284	1302285	-	asmbl_27407,asmbl_27408,asmbl_27409	none	STRG.23810.1,STRG.23810.4,STRG.23810.5	3	STRG.23810.3,Trinity_GG_13281_c0_g1_i1,Trinity_GG_13281_c0_g1_i2,Trinity_GG_13281_c0_g1_i3,blat.proc3825160.chain_949,blat.proc3825160.chain_950,blat.proc3825160.chain_951	7
scaffold_5	alt_donor	13316990	13316991	-	asmbl_44537	none	STRG.6579.1	1	blat.proc3825150.chain_2763,blat.proc3825150.chain_2764,blat.proc3825150.chain_2766	3
scaffold_17	alt_donor	1124305	1124306	+	asmbl_18591	none	STRG.19963.2	1	STRG.19963.1,STRG.19963.3,STRG.19963.4,blat.proc3825174.chain_835,blat.proc3825174.chain_837,blat.proc3825174.chain_838	6
scaffold_22	retained_intron	326720	327593	+	asmbl_29847	none	Trinity_GG_30961_c0_g1_i1,blat.proc3825176.chain_1812	2	STRG.24687.1,Trinity_GG_30961_c0_g1_i2,blat.proc3825176.chain_1811	3
scaffold_3	starts_in_intron	3809452	3809452	+	asmbl_39976	none	Trinity_GG_19060_c0_g1_i2,blat.proc3825164.chain_3333	2	STRG.3100.1,blat.proc3825164.chain_3332	2
scaffold_17	alt_acceptor	8317524	8317525	+	asmbl_18967,asmbl_18968	none	STRG.20456.4,STRG.20456.6	2	STRG.20456.3,STRG.20456.5,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1203	5
scaffold_11	starts_in_intron	13256889	13256889	+	asmbl_6044	none	Trinity_GG_25137_c0_g1_i2,blat.proc3825170.chain_2730	2	STRG.14199.1,STRG.14199.2,blat.proc3825170.chain_2732	3
scaffold_23	spliced_intron	7686045	7686483	+	asmbl_31715,asmbl_31718	none	STRG.26090.3,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i3,blat.proc3825176.chain_3053,blat.proc3825176.chain_3054	5	STRG.26090.4,Trinity_GG_31727_c0_g1_i6,blat.proc3825176.chain_3055	3
scaffold_14	alternate_exon	13582513	13582579	-	asmbl_13643	none	STRG.17639.1,blat.proc3825156.chain_2487	2	STRG.17639.2,blat.proc3825156.chain_2488	2
scaffold_5	retained_intron	19463375	19463478	-	asmbl_44918	none	STRG.7044.2	1	STRG.7044.1	1
scaffold_10	retained_intron	779629	779931	+	asmbl_2870,asmbl_2873,asmbl_2874,asmbl_2875	none	blat.proc3825170.chain_654,blat.proc3825170.chain_655,blat.proc3825170.chain_659,blat.proc3825170.chain_660	4	blat.proc3825170.chain_661	1
scaffold_16	retained_exon	2337297	2337340	-	asmbl_16962	none	STRG.19129.2,Trinity_GG_10745_c0_g1_i1,blat.proc3825158.chain_274	3	STRG.19129.1	1
scaffold_17	alt_acceptor	13610473	13610474	+	asmbl_19338	none	STRG.20835.1	1	STRG.20835.2	1
scaffold_27	alt_donor	4945193	4945194	+	asmbl_36325,asmbl_36327,asmbl_36328,asmbl_36329,asmbl_36330	none	STRG.28932.1,STRG.28932.2,STRG.28932.3,STRG.28932.4,blat.proc3825178.chain_2146,blat.proc3825178.chain_2147	6	blat.proc3825178.chain_2145	1
scaffold_17	starts_in_intron	5726761	5726761	-	asmbl_17954	none	blat.proc3825158.chain_1320	1	STRG.20273.1,STRG.20273.3,blat.proc3825158.chain_1321	3
scaffold_8	ends_in_intron	16502429	16502429	-	asmbl_52402,asmbl_52405	none	STRG.10629.6,Trinity_GG_5934_c0_g1_i2,Trinity_GG_5934_c0_g1_i21,blat.proc3825152.chain_2937,blat.proc3825152.chain_2938	5	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2928,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939,blat.proc3825152.chain_2941	14
scaffold_2	retained_exon	924482	924504	+	asmbl_24153,asmbl_24154	none	STRG.1570.3,STRG.1570.6,blat.proc3825164.chain_1630,blat.proc3825164.chain_1631	4	STRG.1570.1,blat.proc3825164.chain_1625,blat.proc3825164.chain_1632	3
scaffold_15	starts_in_intron	1712168	1712168	+	asmbl_15037,asmbl_15038	none	STRG.17986.3,blat.proc3825172.chain_2712	2	STRG.17986.1,STRG.17986.2,blat.proc3825172.chain_2710,blat.proc3825172.chain_2711,blat.proc3825172.chain_2714,blat.proc3825172.chain_2715	6
scaffold_10	spliced_intron	5006392	5006680	-	asmbl_4329,asmbl_4331	none	STRG.12325.1,STRG.12325.2,blat.proc3825154.chain_893	3	Trinity_GG_6889_c0_g2_i1,blat.proc3825154.chain_895,blat.proc3825154.chain_896,blat.proc3825154.chain_897	4
scaffold_12	starts_in_intron	12927955	12927955	+	asmbl_8035	none	Trinity_GG_25660_c0_g1_i6,blat.proc3825170.chain_3665	2	STRG.15183.1,blat.proc3825170.chain_3668	2
scaffold_4	starts_in_intron	3260254	3260254	-	asmbl_42432	none	blat.proc3825150.chain_515	1	blat.proc3825150.chain_514	1
scaffold_8	alternate_exon	17973918	17974253	-	asmbl_52499	none	STRG.10702.3	1	STRG.10702.1,Trinity_GG_5951_c0_g1_i1,blat.proc3825152.chain_2975	3
scaffold_15	alternate_exon	15347792	15348041	+	asmbl_15754	none	STRG.18919.1	1	STRG.18919.3,Trinity_GG_27682_c0_g1_i1	2
scaffold_13	retained_intron	8683729	8683824	+	asmbl_11137	none	STRG.16135.1,Trinity_GG_26178_c0_g1_i2,blat.proc3825172.chain_903	3	STRG.16135.2,Trinity_GG_26178_c0_g1_i1	2
scaffold_7	starts_in_intron	11767603	11767603	+	asmbl_50186,asmbl_50187	none	STRG.9289.2,blat.proc3825168.chain_1752	2	STRG.9289.1,blat.proc3825168.chain_1750	2
scaffold_15	skipped_exon	2566797	2567481	-	asmbl_14024,asmbl_14025	none	STRG.18046.2,blat.proc3825156.chain_2865	2	STRG.18046.1,STRG.18046.3,blat.proc3825156.chain_2864,blat.proc3825156.chain_2866,blat.proc3825156.chain_2867	5
scaffold_5	spliced_intron	68119	68377	+	asmbl_45067	none	blat.proc3825166.chain_1861	1	Trinity_GG_20364_c0_g1_i1,Trinity_GG_20364_c0_g1_i3,Trinity_GG_20364_c0_g1_i5,blat.proc3825166.chain_1859,blat.proc3825166.chain_1860	5
scaffold_2	alternate_exon	18772685	18772775	+	asmbl_25249	none	STRG.2756.2	1	STRG.2756.1	1
scaffold_5	spliced_intron	9711452	9711758	+	asmbl_45636	none	STRG.6283.1	1	blat.proc3825166.chain_2496	1
scaffold_12	alt_donor	16316169	16316170	-	asmbl_9117,asmbl_9119	none	STRG.15386.2,blat.proc3825156.chain_239	2	STRG.15386.1,blat.proc3825156.chain_241	2
scaffold_1	alt_donor	1417442	1417443	+	asmbl_1481	none	STRG.84.1,Trinity_GG_17391_c0_g1_i2,blat.proc3825164.chain_209	3	STRG.84.2,Trinity_GG_17391_c0_g1_i1,blat.proc3825164.chain_208	3
scaffold_2	alt_donor	20313308	20313309	+	asmbl_25322	none	STRG.2877.4	1	STRG.2877.3,blat.proc3825164.chain_3116	2
scaffold_18	alt_donor	7219069	7219070	-	asmbl_19932	none	STRG.21423.1	1	STRG.21423.2	1
scaffold_1	retained_exon	22371428	22371479	+	asmbl_2687,asmbl_2688	none	STRG.1491.2,STRG.1491.5	2	STRG.1491.3,STRG.1491.4	2
scaffold_3	skipped_exon	5927206	5928685	-	asmbl_38873	none	blat.proc3825148.chain_3098	1	STRG.3252.1,blat.proc3825148.chain_3097,blat.proc3825148.chain_3100	3
scaffold_16	starts_in_intron	4077828	4077828	+	asmbl_16164	none	STRG.19224.3,Trinity_GG_27836_c0_g1_i3,blat.proc3825174.chain_114	3	STRG.19224.1,STRG.19224.2,blat.proc3825174.chain_115,blat.proc3825174.chain_116	4
scaffold_22	retained_intron	11731907	11731990	+	asmbl_30422	none	Trinity_GG_31396_c0_g1_i2	1	Trinity_GG_31396_c0_g1_i1	1
scaffold_18	retained_intron	1624835	1624863	-	asmbl_19629	none	Trinity_GG_11795_c0_g1_i1	1	blat.proc3825158.chain_2023	1
scaffold_11	skipped_exon	3514872	3517181	+	asmbl_5445	none	STRG.13485.1	1	STRG.13485.3,blat.proc3825170.chain_1978	2
scaffold_5	spliced_intron	11016319	11016635	-	asmbl_44397	none	STRG.6388.3	1	STRG.6388.2,blat.proc3825150.chain_2593	2
scaffold_4	alt_acceptor	13416713	13416714	+	asmbl_41788,asmbl_41789,asmbl_41791,asmbl_41792,asmbl_41793	none	STRG.4977.1,STRG.4977.3,blat.proc3825166.chain_1334,blat.proc3825166.chain_1335,blat.proc3825166.chain_1336,blat.proc3825166.chain_1337	6	STRG.4977.2	1
scaffold_23	retained_intron	7984376	7984498	+	asmbl_31748	none	blat.proc3825176.chain_3064	1	STRG.26109.1,STRG.26109.2,blat.proc3825176.chain_3062,blat.proc3825176.chain_3063	4
scaffold_4	alt_acceptor	15031801	15031802	+	asmbl_41924	none	blat.proc3825166.chain_1543	1	blat.proc3825166.chain_1542	1
scaffold_3	retained_exon	6177589	6177666	-	asmbl_38903	none	STRG.3284.2	1	STRG.3284.1,STRG.3284.3,blat.proc3825148.chain_3075,blat.proc3825148.chain_3076	4
scaffold_3026	alt_donor	358	359	+	asmbl_40913	none	STRG.30816.1	1	STRG.30816.3	1
scaffold_13	ends_in_intron	5820574	5820574	+	asmbl_10900	none	blat.proc3825172.chain_715	1	STRG.15896.1	1
scaffold_6	retained_intron	3778396	3778632	+	asmbl_46852,asmbl_46854,asmbl_46855	none	STRG.7375.2,STRG.7375.3,blat.proc3825166.chain_3620,blat.proc3825166.chain_3623,blat.proc3825166.chain_3624,blat.proc3825166.chain_3627	6	STRG.7375.1,Trinity_GG_21375_c0_g1_i7,blat.proc3825166.chain_3621,blat.proc3825166.chain_3622,blat.proc3825166.chain_3625	5
scaffold_23	alternate_exon	7915793	7916159	-	asmbl_31058	none	STRG.26100.1,blat.proc3825160.chain_3253	2	STRG.26100.3	1
scaffold_5	retained_intron	7320374	7320425	+	asmbl_45490,asmbl_45492	none	STRG.6129.1,blat.proc3825166.chain_2350	2	Trinity_GG_20663_c0_g2_i1	1
scaffold_20	retained_exon	9532630	9532662	+	asmbl_26860,asmbl_26861	none	STRG.23496.2,blat.proc3825176.chain_642,blat.proc3825176.chain_644	3	STRG.23496.1	1
scaffold_8	alt_acceptor	6162712	6162713	-	asmbl_51870	none	STRG.10030.4	1	blat.proc3825152.chain_2276	1
scaffold_7	alternate_exon	8315067	8315120	-	asmbl_51000	none	STRG.9070.2,blat.proc3825152.chain_1373	2	STRG.9070.3,STRG.9070.4,blat.proc3825152.chain_1372	3
scaffold_12	retained_intron	10190123	10190194	+	asmbl_7911	none	STRG.14991.1	1	STRG.14991.2	1
scaffold_6	alt_donor	601235	601236	-	asmbl_48047,asmbl_48050	none	STRG.7125.1,STRG.7125.2,blat.proc3825150.chain_3224	3	STRG.7125.3,STRG.7125.4,STRG.7125.5,blat.proc3825150.chain_3225	4
scaffold_17	starts_in_intron	8770248	8770248	-	asmbl_18114	none	Trinity_GG_11515_c0_g1_i1,blat.proc3825158.chain_1510	2	STRG.20487.1,Trinity_GG_11515_c0_g1_i2,blat.proc3825158.chain_1511	3
scaffold_2	spliced_intron	7774792	7775188	-	asmbl_23275,asmbl_23276	none	STRG.2072.2,STRG.2072.3,blat.proc3825148.chain_2100,blat.proc3825148.chain_2101	4	STRG.2072.1,Trinity_GG_1154_c0_g1_i3,Trinity_GG_1154_c0_g1_i4,blat.proc3825148.chain_2099,blat.proc3825148.chain_2102,blat.proc3825148.chain_2103	6
scaffold_3	alternate_exon	3245921	3246437	+	asmbl_39942	none	Trinity_GG_19083_c1_g1_i21,blat.proc3825164.chain_3392	2	STRG.3072.2,STRG.3072.4	2
scaffold_9	alternate_exon	647870	648036	+	asmbl_53787	none	STRG.10795.1	1	STRG.10795.2,STRG.10795.3,blat.proc3825168.chain_3338,blat.proc3825168.chain_3339,blat.proc3825168.chain_3340	5
scaffold_26	alternate_exon	1323200	1329585	-	asmbl_35400	none	STRG.27913.2	1	blat.proc3825162.chain_1239	1
scaffold_10	ends_in_intron	6884696	6884696	-	asmbl_4520	none	blat.proc3825154.chain_1114	1	STRG.12514.1,Trinity_GG_7002_c0_g1_i1,blat.proc3825154.chain_1115	3
scaffold_12	retained_intron	4290876	4291432	-	asmbl_8387	none	blat.proc3825154.chain_3073	1	STRG.14604.1,blat.proc3825154.chain_3072	2
scaffold_10	alt_acceptor	11969778	11969779	+	asmbl_3518	none	STRG.12838.5	1	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.6,Trinity_GG_24389_c0_g1_i5,blat.proc3825170.chain_1447	6
scaffold_12	alt_acceptor	16404416	16404417	+	asmbl_8169,asmbl_8171	none	STRG.15402.2,STRG.15402.3,Trinity_GG_25733_c0_g1_i7,blat.proc3825172.chain_45	4	STRG.15402.4,STRG.15402.5,STRG.15402.6,blat.proc3825172.chain_46	4
scaffold_6	ends_in_intron	5664063	5664063	+	asmbl_46970	none	blat.proc3825166.chain_3663	1	STRG.7530.1,Trinity_GG_21398_c0_g1_i2,blat.proc3825166.chain_3662	3
scaffold_10	alt_donor	16997918	16997919	-	asmbl_5021	none	STRG.13144.1,Trinity_GG_7364_c0_g1_i1,blat.proc3825154.chain_1735	3	STRG.13144.2,Trinity_GG_7364_c0_g1_i2,blat.proc3825154.chain_1736	3
scaffold_8	retained_intron	16397415	16397527	-	asmbl_52386,asmbl_52388,asmbl_52394,asmbl_52395	none	STRG.10626.1,STRG.10626.2,blat.proc3825152.chain_2845,blat.proc3825152.chain_2848,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	6	STRG.10626.3,STRG.10626.4,blat.proc3825152.chain_2846,blat.proc3825152.chain_2849	4
scaffold_1	retained_exon	3498449	3498541	-	asmbl_146,asmbl_147,asmbl_149,asmbl_151,asmbl_152,asmbl_153	none	STRG.221.1,STRG.221.4,blat.proc3825148.chain_213,blat.proc3825148.chain_214,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_219,blat.proc3825148.chain_220	8	STRG.221.2,blat.proc3825148.chain_215,blat.proc3825148.chain_218,blat.proc3825148.chain_221	4
scaffold_17	alternate_exon	11038782	11039046	-	asmbl_18260	none	STRG.20664.4,blat.proc3825158.chain_1651	2	STRG.20664.5,STRG.20664.7,Trinity_GG_11602_c1_g1_i1,blat.proc3825158.chain_1650,blat.proc3825158.chain_1653,blat.proc3825158.chain_1655	6
scaffold_28	alt_acceptor	6515709	6515710	-	asmbl_38348	none	STRG.29749.3	1	STRG.29749.1	1
scaffold_2	spliced_intron	18614288	18614705	-	asmbl_23807	none	blat.proc3825148.chain_2647	1	blat.proc3825148.chain_2648	1
scaffold_21	alt_acceptor	675967	675968	-	asmbl_27338	none	STRG.23755.2,blat.proc3825160.chain_876	2	STRG.23755.3,STRG.23755.4,STRG.23755.5	3
scaffold_18	skipped_exon	5905385	5905544	-	asmbl_19879	none	STRG.21337.3	1	STRG.21337.4	1
scaffold_26	spliced_intron	6350817	6351171	-	asmbl_35685	none	STRG.28335.1	1	STRG.28335.4,blat.proc3825162.chain_1569	2
scaffold_22	retained_exon	10044904	10045098	-	asmbl_29578	none	STRG.25357.4	1	STRG.25357.3	1
scaffold_13	spliced_intron	13972082	13972131	+	asmbl_11417	none	STRG.16448.2	1	Trinity_GG_26313_c1_g1_i1,blat.proc3825172.chain_1174	2
scaffold_25	retained_intron	8705312	8707289	+	asmbl_33751	none	STRG.27702.2,blat.proc3825178.chain_766,blat.proc3825178.chain_770	3	STRG.27702.3,blat.proc3825178.chain_762	2
scaffold_1	alt_donor	16744065	16744066	-	asmbl_1015	none	STRG.1179.1,blat.proc3825148.chain_1169	2	blat.proc3825148.chain_1167	1
scaffold_12	retained_intron	15773119	15773403	-	asmbl_9101	none	STRG.15372.2,blat.proc3825156.chain_174	2	STRG.15372.1,blat.proc3825156.chain_175	2
scaffold_23	retained_intron	3655994	3656154	+	asmbl_31461,asmbl_31463	none	STRG.25792.2,Trinity_GG_31535_c0_g1_i1,Trinity_GG_31535_c0_g1_i3,blat.proc3825176.chain_2718,blat.proc3825176.chain_2720	5	STRG.25792.1,blat.proc3825176.chain_2719	2
scaffold_26	spliced_intron	5795098	5795276	-	asmbl_35626	none	STRG.28282.1	1	STRG.28282.2,STRG.28282.3	2
scaffold_4	alt_donor	16639111	16639112	+	asmbl_41986	none	STRG.5243.1	1	STRG.5243.2	1
scaffold_7	alt_donor	11413023	11413024	+	asmbl_50172	none	STRG.9288.3,Trinity_GG_22465_c0_g1_i4,blat.proc3825168.chain_1794,blat.proc3825168.chain_1795	4	STRG.9288.1,Trinity_GG_22465_c0_g1_i2,blat.proc3825168.chain_1792	3
scaffold_2	alternate_exon	181211	181283	+	asmbl_24084	none	STRG.1512.1	1	blat.proc3825164.chain_1665	1
scaffold_5	alt_acceptor	4686016	4686017	-	asmbl_43983,asmbl_43985,asmbl_43986,asmbl_43992,asmbl_43993,asmbl_43994,asmbl_43995	none	STRG.5929.1,STRG.5929.4,Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2075,blat.proc3825150.chain_2077,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084,blat.proc3825150.chain_2085	10	blat.proc3825150.chain_2078	1
scaffold_17	spliced_intron	10048773	10050113	+	asmbl_19163	none	blat.proc3825174.chain_1496	1	STRG.20618.3,Trinity_GG_28608_c0_g1_i3,Trinity_GG_28608_c1_g1_i1,blat.proc3825174.chain_1498,blat.proc3825174.chain_1501	5
scaffold_19	retained_intron	12491455	12492152	+	asmbl_21814	none	STRG.22590.2	1	STRG.22590.1,blat.proc3825174.chain_3626	2
scaffold_1	alt_acceptor	20350986	20350987	+	asmbl_2619,asmbl_2623	none	STRG.1396.1,blat.proc3825164.chain_1584	2	STRG.1396.6	1
scaffold_1	retained_intron	14274324	14274482	+	asmbl_2364,asmbl_2369	none	STRG.1023.2,blat.proc3825164.chain_1209,blat.proc3825164.chain_1210	3	STRG.1023.1,blat.proc3825164.chain_1208	2
scaffold_17	alternate_exon	12196149	12198249	+	asmbl_19278	none	STRG.20759.3,blat.proc3825174.chain_1661	2	blat.proc3825174.chain_1664	1
scaffold_2	spliced_intron	13397328	13397546	+	asmbl_24842,asmbl_24843,asmbl_24845	none	STRG.2359.2,STRG.2359.3,blat.proc3825164.chain_2560,blat.proc3825164.chain_2562	4	STRG.2359.1,Trinity_GG_18642_c0_g1_i2,blat.proc3825164.chain_2561,blat.proc3825164.chain_2563,blat.proc3825164.chain_2564	5
scaffold_3	alt_donor	6190086	6190087	-	asmbl_38908,asmbl_38910,asmbl_38916,asmbl_38917	none	STRG.3266.1,STRG.3266.2,blat.proc3825148.chain_3119,blat.proc3825148.chain_3121,blat.proc3825148.chain_3123,blat.proc3825148.chain_3125	6	blat.proc3825148.chain_3124	1
scaffold_23	ends_in_intron	2027421	2027421	-	asmbl_30687	none	blat.proc3825160.chain_2839	1	STRG.25675.1,blat.proc3825160.chain_2837,blat.proc3825160.chain_2838	3
scaffold_2	spliced_intron	14560203	14560372	+	asmbl_24948,asmbl_24949,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961	none	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2651,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	12	blat.proc3825164.chain_2659	1
scaffold_18	retained_intron	12400501	12400526	-	asmbl_20142,asmbl_20143,asmbl_20144	none	STRG.21709.1,STRG.21709.2,Trinity_GG_12126_c0_g1_i7,blat.proc3825158.chain_2581,blat.proc3825158.chain_2583	5	STRG.21709.3,STRG.21709.4	2
scaffold_7	alt_acceptor	1236476	1236477	+	asmbl_49601	none	Trinity_GG_22033_c0_g1_i15	1	STRG.8637.1,STRG.8637.4,STRG.8637.7,Trinity_GG_22033_c0_g1_i4,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	9
scaffold_6	ends_in_intron	12820785	12820785	-	asmbl_48849	none	Trinity_GG_4534_c0_g1_i2,blat.proc3825152.chain_378	2	STRG.8038.1,blat.proc3825152.chain_377	2
scaffold_24	alt_donor	4808743	4808744	-	asmbl_32875	none	STRG.26612.1,blat.proc3825160.chain_3662	2	STRG.26612.2,blat.proc3825160.chain_3663	2
scaffold_20	alt_acceptor	4262299	4262300	-	asmbl_25730	none	STRG.23110.1	1	STRG.23110.3	1
scaffold_3	retained_intron	18372532	18372629	-	asmbl_39620	none	blat.proc3825150.chain_229	1	STRG.4051.1	1
scaffold_14	starts_in_intron	4117097	4117097	+	asmbl_11974	none	STRG.16963.4,blat.proc3825172.chain_1738	2	STRG.16963.1,STRG.16963.2,STRG.16963.3,Trinity_GG_26646_c0_g1_i1,Trinity_GG_26646_c0_g1_i3,Trinity_GG_26646_c0_g1_i5,blat.proc3825172.chain_1739,blat.proc3825172.chain_1740,blat.proc3825172.chain_1741	9
scaffold_1	spliced_intron	10950971	10951077	+	asmbl_2035,asmbl_2036,asmbl_2038,asmbl_2039,asmbl_2041	none	STRG.715.1,STRG.715.2,STRG.715.3,blat.proc3825164.chain_858,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_863,blat.proc3825164.chain_864	8	STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_862	3
scaffold_19	alt_acceptor	623985	623986	-	asmbl_21988	none	STRG.21845.2	1	STRG.21845.1,STRG.21845.3,blat.proc3825158.chain_2686	3
scaffold_25	starts_in_intron	2687225	2687225	+	asmbl_33404	none	STRG.27234.2	1	STRG.27234.1,blat.proc3825178.chain_309	2
scaffold_1	alternate_exon	3566661	3575129	+	asmbl_1604	none	STRG.224.1,Trinity_GG_17445_c1_g1_i1,Trinity_GG_17462_c0_g1_i1,Trinity_GG_17469_c0_g1_i1,Trinity_GG_17471_c0_g1_i1,blat.proc3825164.chain_297,blat.proc3825164.chain_299,blat.proc3825164.chain_325,blat.proc3825164.chain_334,blat.proc3825164.chain_338	10	STRG.224.2,blat.proc3825164.chain_298	2
scaffold_13	alternate_exon	405973	407045	-	asmbl_9354	none	STRG.15444.3	1	STRG.15444.2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360	7
scaffold_12	alternate_exon	2927115	2928560	-	asmbl_8334	none	STRG.14526.5	1	STRG.14526.1	1
scaffold_16	alternate_exon	11952502	11952529	+	asmbl_16619	none	STRG.19723.3,Trinity_GG_28067_c0_g1_i4,blat.proc3825174.chain_555	3	STRG.19723.1,Trinity_GG_28067_c0_g1_i3,blat.proc3825174.chain_557	3
scaffold_21	starts_in_intron	5134934	5134934	-	asmbl_27609	none	STRG.24059.5,blat.proc3825160.chain_1226	2	STRG.24059.2,STRG.24059.3,STRG.24059.4	3
scaffold_550	spliced_intron	1774	1827	+	asmbl_46559,asmbl_46560	none	blat.proc3825178.chain_3461,blat.proc3825178.chain_3462	2	STRG.30372.1,STRG.30372.2	2
scaffold_10	spliced_intron	4057996	4058495	-	asmbl_4252,asmbl_4255	none	STRG.12246.2,STRG.12246.4,blat.proc3825154.chain_822,blat.proc3825154.chain_824	4	STRG.12246.7,Trinity_GG_6843_c2_g1_i1,blat.proc3825154.chain_821,blat.proc3825154.chain_827	4
scaffold_12	alternate_exon	12447069	12447103	+	asmbl_8005	none	Trinity_GG_25666_c1_g1_i1,blat.proc3825170.chain_3675	2	STRG.15151.1,STRG.15151.2,STRG.15151.3,blat.proc3825170.chain_3676,blat.proc3825170.chain_3677	5
scaffold_4	alt_acceptor	19539846	19539847	-	asmbl_43449	none	STRG.5541.3	1	blat.proc3825150.chain_1720	1
scaffold_3	skipped_exon	11977944	11980935	+	asmbl_40385	none	STRG.3620.3	1	STRG.3620.1,STRG.3620.2,Trinity_GG_19308_c0_g1_i1,Trinity_GG_19308_c0_g1_i2,blat.proc3825166.chain_49,blat.proc3825166.chain_50	6
scaffold_2	retained_intron	17237710	17237871	-	asmbl_23720	none	Trinity_GG_1438_c0_g1_i2,blat.proc3825148.chain_2576	2	STRG.2624.1,blat.proc3825148.chain_2575	2
scaffold_14	starts_in_intron	14147837	14147837	+	asmbl_12524	none	Trinity_GG_27000_c0_g1_i5,blat.proc3825172.chain_2358	2	STRG.17687.2,STRG.17687.4,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	4
scaffold_423	alt_acceptor	672	673	+	asmbl_43688	none	STRG.30324.2	1	STRG.30324.1	1
scaffold_4	spliced_intron	4099761	4100917	+	asmbl_41231,asmbl_41232	none	STRG.4316.2,blat.proc3825166.chain_696	2	STRG.4316.1,Trinity_GG_19673_c0_g2_i1,blat.proc3825166.chain_699	3
scaffold_12	retained_exon	7541007	7541102	-	asmbl_8594,asmbl_8598	none	STRG.14835.2,STRG.14835.3,blat.proc3825154.chain_3375	3	STRG.14835.1,blat.proc3825154.chain_3373,blat.proc3825154.chain_3374	3
scaffold_5	starts_in_intron	965744	965744	-	asmbl_43799	none	Trinity_GG_3137_c0_g1_i4,blat.proc3825150.chain_1793	2	STRG.5644.1,STRG.5644.2,Trinity_GG_3137_c0_g1_i1	3
scaffold_3	retained_intron	14332211	14332313	+	asmbl_40507,asmbl_40508	none	STRG.3779.1,blat.proc3825166.chain_247,blat.proc3825166.chain_248	3	blat.proc3825166.chain_249	1
scaffold_18	starts_in_intron	7549580	7549580	-	asmbl_19956	none	blat.proc3825158.chain_2375	1	STRG.21458.1,STRG.21458.2,STRG.21458.3,blat.proc3825158.chain_2374	4
scaffold_9	alt_donor	14819872	14819873	-	asmbl_55500	none	blat.proc3825154.chain_162	1	STRG.11702.1,STRG.11702.3,STRG.11702.7,STRG.11702.8,Trinity_GG_6457_c0_g1_i2,blat.proc3825154.chain_158,blat.proc3825154.chain_160,blat.proc3825154.chain_161	8
scaffold_23	spliced_intron	9425520	9425631	+	asmbl_31794,asmbl_31795	none	STRG.26164.2,STRG.26164.3	2	STRG.26164.1,Trinity_GG_31776_c0_g1_i1,blat.proc3825176.chain_3142	3
scaffold_3	alt_donor	3834808	3834809	-	asmbl_38786	none	STRG.3105.1,blat.proc3825148.chain_2974	2	STRG.3105.2,blat.proc3825148.chain_2975	2
scaffold_18	alt_donor	7662032	7662033	+	asmbl_20766	none	STRG.21471.3	1	STRG.21471.1,Trinity_GG_29183_c0_g1_i11	2
scaffold_8	alt_acceptor	18575180	18575181	-	asmbl_52558	none	STRG.10754.3	1	STRG.10754.1,STRG.10754.2,Trinity_GG_5945_c0_g1_i1,Trinity_GG_5945_c0_g1_i4,blat.proc3825152.chain_2963,blat.proc3825152.chain_2964,blat.proc3825152.chain_2965	7
scaffold_3	alt_donor	19901546	19901547	-	asmbl_39680	none	STRG.4108.2	1	STRG.4108.1,blat.proc3825150.chain_280	2
scaffold_8	starts_in_intron	8745009	8745009	+	asmbl_53036	none	blat.proc3825168.chain_2692	1	STRG.10133.1,STRG.10133.2,blat.proc3825168.chain_2691	3
scaffold_5	starts_in_intron	18575972	18575972	+	asmbl_46275	none	Trinity_GG_21161_c0_g1_i2,blat.proc3825166.chain_3216	2	STRG.6990.1,Trinity_GG_21161_c0_g1_i3,blat.proc3825166.chain_3215,blat.proc3825166.chain_3217	4
scaffold_85	alt_acceptor	3723	3724	-	asmbl_53704,asmbl_53706	none	STRG.30130.1,blat.proc3825162.chain_3289,blat.proc3825162.chain_3290	3	STRG.30130.2	1
scaffold_18	alt_donor	7867750	7867751	+	asmbl_20799,asmbl_20800,asmbl_20804	none	STRG.21488.1,STRG.21488.2,Trinity_GG_29146_c0_g1_i18,blat.proc3825174.chain_2452,blat.proc3825174.chain_2456,blat.proc3825174.chain_2458,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	8	STRG.21488.3,STRG.21488.5,Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i3,blat.proc3825174.chain_2450,blat.proc3825174.chain_2455	6
scaffold_8	retained_intron	17815077	17815250	+	asmbl_53509,asmbl_53512	none	blat.proc3825168.chain_3180,blat.proc3825168.chain_3181	2	STRG.10693.4,blat.proc3825168.chain_3178	2
scaffold_23	spliced_intron	5339139	5340317	-	asmbl_30906,asmbl_30909	none	STRG.25911.1,blat.proc3825160.chain_3100,blat.proc3825160.chain_3101	3	STRG.25911.2,Trinity_GG_14511_c0_g1_i7,blat.proc3825160.chain_3097,blat.proc3825160.chain_3098,blat.proc3825160.chain_3102	5
scaffold_2	skipped_exon	14734113	14735586	+	asmbl_24974,asmbl_24981	none	STRG.2475.1,blat.proc3825164.chain_2627,blat.proc3825164.chain_2632	3	STRG.2475.2,blat.proc3825164.chain_2626,blat.proc3825164.chain_2630	3
scaffold_19	spliced_intron	8258058	8258133	+	asmbl_21506	none	STRG.22285.1,blat.proc3825174.chain_3261	2	blat.proc3825174.chain_3260	1
scaffold_1	alt_acceptor	12049593	12049594	-	asmbl_680	none	STRG.817.3	1	blat.proc3825148.chain_753	1
scaffold_25	starts_in_intron	3486356	3486356	+	asmbl_33422	none	blat.proc3825178.chain_374	1	STRG.27296.1	1
scaffold_24	spliced_intron	162380	162721	-	asmbl_32698	none	Trinity_GG_14715_c0_g1_i1,blat.proc3825160.chain_3448	2	STRG.26320.2,Trinity_GG_14715_c0_g1_i3,blat.proc3825160.chain_3447	3
scaffold_20	spliced_intron	11672198	11672271	-	asmbl_26171,asmbl_26175	none	STRG.23670.3,blat.proc3825160.chain_747,blat.proc3825160.chain_750	3	STRG.23670.1,blat.proc3825160.chain_748	2
scaffold_15	retained_intron	15414145	15414258	+	asmbl_15775,asmbl_15776	none	STRG.18953.2,STRG.18953.3,Trinity_GG_27701_c0_g1_i3,blat.proc3825172.chain_3613	4	STRG.18953.1,STRG.18953.5,STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3607,blat.proc3825172.chain_3610,blat.proc3825172.chain_3611	7
scaffold_26	spliced_intron	5294667	5294755	+	asmbl_34974	none	STRG.28232.1,Trinity_GG_32911_c0_g1_i3,blat.proc3825178.chain_1316	3	blat.proc3825178.chain_1317	1
scaffold_6	alt_donor	18834831	18834832	+	asmbl_47853,asmbl_47854,asmbl_47855,asmbl_47856	none	STRG.8556.1,blat.proc3825168.chain_960,blat.proc3825168.chain_961,blat.proc3825168.chain_962,blat.proc3825168.chain_963	5	STRG.8556.2,STRG.8556.3	2
scaffold_701	alt_donor	4744	4745	-	asmbl_51603	none	STRG.30441.2,blat.proc3825162.chain_3538	2	STRG.30441.1,blat.proc3825162.chain_3537	2
scaffold_3	spliced_intron	14587006	14587312	-	asmbl_39403	none	STRG.3803.1,Trinity_GG_2081_c0_g1_i2,blat.proc3825148.chain_3681	3	STRG.3803.2,blat.proc3825148.chain_3683	2
scaffold_15	alternate_exon	3395683	3396554	-	asmbl_14097,asmbl_14098	none	STRG.18121.1,blat.proc3825156.chain_2975,blat.proc3825156.chain_2976	3	STRG.18121.3,STRG.18121.4	2
scaffold_27	alt_donor	4938756	4938757	+	asmbl_36328	none	STRG.28932.4	1	STRG.28932.1,STRG.28932.2,blat.proc3825178.chain_2145,blat.proc3825178.chain_2147	4
scaffold_19	alternate_exon	7583511	7584123	+	asmbl_21473	none	blat.proc3825174.chain_3235	1	blat.proc3825174.chain_3240	1
scaffold_10	retained_exon	12898797	12898824	-	asmbl_4839	none	blat.proc3825154.chain_1475	1	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1474,blat.proc3825154.chain_1476	4
scaffold_4	alternate_exon	10915949	10916142	+	asmbl_41684	none	STRG.4813.2,blat.proc3825166.chain_1270	2	STRG.4813.1,blat.proc3825166.chain_1271	2
scaffold_13	alt_acceptor	3748307	3748308	+	asmbl_10742,asmbl_10743,asmbl_10744	none	STRG.15702.1,STRG.15702.2,Trinity_GG_25936_c0_g1_i4,blat.proc3825172.chain_435	4	Trinity_GG_25936_c0_g1_i1,blat.proc3825172.chain_434	2
scaffold_19	retained_exon	857705	858401	+	asmbl_21219	none	blat.proc3825174.chain_2854	1	STRG.21878.1,Trinity_GG_29375_c1_g1_i1,blat.proc3825174.chain_2855	3
scaffold_19	spliced_intron	4808048	4808289	-	asmbl_22133	none	STRG.22061.1,blat.proc3825158.chain_2883	2	blat.proc3825158.chain_2882	1
scaffold_21	alternate_exon	7937501	7937647	-	asmbl_27871	none	Trinity_GG_13571_c0_g1_i1,blat.proc3825160.chain_1470	2	blat.proc3825160.chain_1469	1
scaffold_16	alt_donor	1123802	1123803	-	asmbl_16925	none	STRG.19077.2,blat.proc3825158.chain_236	2	STRG.19077.1	1
scaffold_5	retained_intron	8746681	8747979	+	asmbl_45566	none	STRG.6210.1,Trinity_GG_20640_c0_g1_i3,blat.proc3825166.chain_2311	3	STRG.6210.2,Trinity_GG_20640_c0_g1_i4,Trinity_GG_20640_c0_g1_i5,blat.proc3825166.chain_2309,blat.proc3825166.chain_2310	5
scaffold_4	retained_intron	9344094	9344316	-	asmbl_42808	none	blat.proc3825150.chain_946	1	STRG.4735.1,blat.proc3825150.chain_947,blat.proc3825150.chain_949	3
scaffold_17	starts_in_intron	11339255	11339255	-	asmbl_18277	none	blat.proc3825158.chain_1614	1	STRG.20687.1,STRG.20687.2,blat.proc3825158.chain_1615,blat.proc3825158.chain_1616	4
scaffold_1	alt_acceptor	14528878	14528879	-	asmbl_933	none	STRG.1052.1,blat.proc3825148.chain_1042	2	blat.proc3825148.chain_1041	1
scaffold_13	starts_in_intron	6384235	6384235	-	asmbl_9783	none	Trinity_GG_8978_c1_g1_i1,blat.proc3825156.chain_854	2	STRG.15927.1,blat.proc3825156.chain_856	2
scaffold_10	starts_in_intron	566348	566348	-	asmbl_3971	none	blat.proc3825154.chain_410	1	STRG.11939.1,blat.proc3825154.chain_409	2
scaffold_13	alternate_exon	896155	912229	-	asmbl_9376,asmbl_9380,asmbl_9381,asmbl_9384,asmbl_9385	none	STRG.15470.1,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_271,blat.proc3825156.chain_272	9	Trinity_GG_8651_c0_g1_i8,blat.proc3825156.chain_265	2
scaffold_18	alt_donor	347719	347720	+	asmbl_20293,asmbl_20294	none	STRG.20985.1,STRG.20985.2,blat.proc3825174.chain_1892,blat.proc3825174.chain_1894	4	blat.proc3825174.chain_1893	1
scaffold_1	starts_in_intron	7207346	7207346	+	asmbl_1891	none	blat.proc3825164.chain_673	1	STRG.515.1,blat.proc3825164.chain_674	2
scaffold_7	alt_acceptor	5224680	5224681	+	asmbl_49794	none	STRG.8861.1,blat.proc3825168.chain_1313	2	STRG.8861.2	1
scaffold_15	starts_in_intron	4964245	4964245	+	asmbl_15181	none	blat.proc3825172.chain_2891	1	STRG.18207.1,STRG.18207.2,STRG.18207.3,STRG.18207.4,Trinity_GG_27299_c0_g1_i8,Trinity_GG_27299_c0_g1_i9,blat.proc3825172.chain_2889,blat.proc3825172.chain_2890,blat.proc3825172.chain_2892,blat.proc3825172.chain_2893,blat.proc3825172.chain_2895	11
scaffold_8	starts_in_intron	3621277	3621277	+	asmbl_52788	none	Trinity_GG_22804_c0_g1_i2,blat.proc3825168.chain_2409	2	STRG.9863.1,STRG.9863.2,STRG.9863.3,STRG.9863.4,STRG.9863.5,blat.proc3825168.chain_2408,blat.proc3825168.chain_2410	7
scaffold_5	retained_intron	420596	420639	-	asmbl_43775	none	STRG.5612.1	1	blat.proc3825150.chain_1845	1
scaffold_4	alt_donor	6282536	6282537	-	asmbl_42669,asmbl_42672	none	Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i5,blat.proc3825150.chain_777,blat.proc3825150.chain_780	4	Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_778	2
scaffold_9	skipped_exon	8938979	8939567	-	asmbl_55146,asmbl_55148	none	STRG.11280.2,blat.proc3825152.chain_3427	2	STRG.11280.1,blat.proc3825152.chain_3429,blat.proc3825152.chain_3430,blat.proc3825152.chain_3431	4
scaffold_20	retained_intron	1671485	1671524	+	asmbl_26442	none	STRG.22909.1,Trinity_GG_29939_c0_g1_i1	2	STRG.22909.2	1
scaffold_24	alt_donor	8954907	8954908	+	asmbl_32463	none	blat.proc3825178.chain_104	1	STRG.26917.2	1
scaffold_24	alt_acceptor	3656071	3656072	+	asmbl_32148,asmbl_32153	none	STRG.26550.1,blat.proc3825176.chain_3465,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469	4	STRG.26550.2,STRG.26550.3,STRG.26550.5,STRG.26550.6,Trinity_GG_31970_c0_g1_i5,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463,blat.proc3825176.chain_3466,blat.proc3825176.chain_3467,blat.proc3825176.chain_3470	10
scaffold_1	retained_intron	18357390	18357458	+	asmbl_2559	none	STRG.1288.1,Trinity_GG_18012_c0_g1_i2,blat.proc3825164.chain_1344	3	STRG.1288.2	1
scaffold_4	starts_in_intron	17029176	17029176	+	asmbl_42024	none	blat.proc3825166.chain_1649	1	STRG.5301.2,STRG.5301.3,blat.proc3825166.chain_1648,blat.proc3825166.chain_1650	4
scaffold_21	alt_donor	5776475	5776476	-	asmbl_27691,asmbl_27694,asmbl_27695,asmbl_27697	none	STRG.24114.1,STRG.24114.3,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200	5	STRG.24114.2,blat.proc3825160.chain_1203	2
scaffold_3	alt_donor	7917893	7917894	-	asmbl_38998,asmbl_38999	none	STRG.3377.1,STRG.3377.3	2	STRG.3377.2,STRG.3377.4	2
scaffold_10	spliced_intron	779629	779931	+	asmbl_2876	none	blat.proc3825170.chain_661	1	blat.proc3825170.chain_654,blat.proc3825170.chain_655,blat.proc3825170.chain_659,blat.proc3825170.chain_660	4
scaffold_20	alt_donor	7209004	7209005	+	asmbl_26708	none	STRG.23290.1,blat.proc3825176.chain_453	2	STRG.23290.2,Trinity_GG_30160_c0_g1_i1,blat.proc3825176.chain_454	3
scaffold_6	retained_exon	14900005	14900184	+	asmbl_47647	none	STRG.8266.3,blat.proc3825168.chain_753	2	STRG.8266.2,Trinity_GG_21865_c0_g1_i1,blat.proc3825168.chain_752	3
scaffold_14	retained_exon	11664755	11665268	-	asmbl_13511,asmbl_13512,asmbl_13513	none	STRG.17511.1,STRG.17511.2,blat.proc3825156.chain_2307,blat.proc3825156.chain_2308,blat.proc3825156.chain_2309	5	blat.proc3825156.chain_2310	1
scaffold_9	alt_acceptor	13297144	13297145	-	asmbl_55423,asmbl_55424	none	STRG.11628.1,STRG.11628.3	2	STRG.11628.2,STRG.11628.5	2
scaffold_5	alt_acceptor	16205611	16205612	+	asmbl_46059,asmbl_46060,asmbl_46062	none	STRG.6809.1,STRG.6809.2,blat.proc3825166.chain_2951,blat.proc3825166.chain_2952,blat.proc3825166.chain_2953	5	blat.proc3825166.chain_2954	1
scaffold_20	starts_in_intron	9730352	9730352	+	asmbl_26893	none	STRG.23516.2,blat.proc3825176.chain_653	2	STRG.23516.1,blat.proc3825176.chain_652	2
scaffold_2	alternate_exon	2586545	2603595	-	asmbl_22908	none	STRG.1708.1,Trinity_GG_915_c0_g1_i2,blat.proc3825148.chain_1640,blat.proc3825148.chain_1643	4	blat.proc3825148.chain_1634	1
scaffold_6	retained_intron	1749516	1750052	-	asmbl_48113,asmbl_48114,asmbl_48117,asmbl_48119	none	STRG.7232.1,STRG.7232.3,Trinity_GG_4021_c0_g1_i7,blat.proc3825150.chain_3309,blat.proc3825150.chain_3310,blat.proc3825150.chain_3311,blat.proc3825150.chain_3315	7	STRG.7232.2,STRG.7232.4,STRG.7232.5,blat.proc3825150.chain_3312,blat.proc3825150.chain_3313	5
scaffold_12	skipped_exon	9668105	9671050	+	asmbl_7869	none	Trinity_GG_25536_c0_g1_i1,blat.proc3825170.chain_3436	2	STRG.14944.1,STRG.14944.2,Trinity_GG_25536_c0_g1_i3,blat.proc3825170.chain_3434	4
scaffold_10	retained_exon	12818218	12819520	+	asmbl_3546,asmbl_3548	none	STRG.12867.1,STRG.12867.2,blat.proc3825170.chain_1475	3	blat.proc3825170.chain_1476	1
scaffold_13	spliced_intron	87947	88104	+	asmbl_10459,asmbl_10460	none	STRG.15429.2,blat.proc3825172.chain_143	2	STRG.15429.1,Trinity_GG_25788_c0_g1_i2,blat.proc3825172.chain_142,blat.proc3825172.chain_144	4
scaffold_1	ends_in_intron	1799011	1799011	+	asmbl_1510	none	Trinity_GG_17403_c0_g1_i1,blat.proc3825164.chain_227	2	STRG.118.1,Trinity_GG_17403_c0_g1_i2,blat.proc3825164.chain_228	3
scaffold_5	alt_donor	15893580	15893581	+	asmbl_46027,asmbl_46028	none	STRG.6778.2,STRG.6778.3,blat.proc3825166.chain_2866,blat.proc3825166.chain_2867	4	STRG.6778.4	1
scaffold_1	alt_acceptor	3255231	3255232	+	asmbl_1582	none	STRG.205.1,Trinity_GG_17459_c0_g1_i4,blat.proc3825164.chain_321	3	blat.proc3825164.chain_320,blat.proc3825164.chain_322	2
scaffold_7	starts_in_intron	17990672	17990672	+	asmbl_50507	none	STRG.9639.2,blat.proc3825168.chain_2164	2	STRG.9639.1	1
scaffold_21	retained_intron	7422031	7422123	-	asmbl_27809	none	blat.proc3825160.chain_1445	1	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	5
scaffold_11	retained_exon	7403752	7404186	+	asmbl_5669	none	STRG.13748.1,Trinity_GG_24841_c0_g1_i1,blat.proc3825170.chain_2213	3	Trinity_GG_24841_c0_g1_i2,blat.proc3825170.chain_2214	2
scaffold_5	spliced_intron	6576837	6576949	-	asmbl_44097,asmbl_44098	none	STRG.6057.1,STRG.6057.2,blat.proc3825150.chain_2178,blat.proc3825150.chain_2180	4	Trinity_GG_3360_c0_g1_i4,blat.proc3825150.chain_2174	2
scaffold_16	alt_acceptor	4137289	4137290	-	asmbl_17052	none	STRG.19229.4,blat.proc3825158.chain_423	2	STRG.19229.2,blat.proc3825158.chain_421	2
scaffold_8	starts_in_intron	25879	25879	-	asmbl_51684,asmbl_51685	none	STRG.9705.2,blat.proc3825152.chain_2048	2	STRG.9705.1,blat.proc3825152.chain_2050	2
scaffold_13	alternate_exon	8895829	8895935	-	asmbl_9996	none	STRG.16155.1,blat.proc3825156.chain_1024	2	STRG.16155.2	1
scaffold_22	starts_in_intron	521238	521238	+	asmbl_29864	none	blat.proc3825176.chain_1741	1	STRG.24700.1,blat.proc3825176.chain_1742,blat.proc3825176.chain_1743	3
scaffold_11	ends_in_intron	16460283	16460283	+	asmbl_6150	none	blat.proc3825170.chain_2853	1	STRG.14345.1	1
scaffold_20	retained_exon	9969246	9969260	+	asmbl_26917	none	STRG.23545.2,blat.proc3825176.chain_681	2	STRG.23545.1,Trinity_GG_30309_c0_g1_i2,blat.proc3825176.chain_682	3
scaffold_4	alt_donor	14590933	14590934	-	asmbl_43051,asmbl_43053	none	STRG.5077.1,STRG.5077.2,blat.proc3825150.chain_1241	3	STRG.5077.3	1
scaffold_14	alt_donor	6671832	6671833	-	asmbl_13147	none	STRG.17126.2,blat.proc3825156.chain_1876	2	STRG.17126.1,blat.proc3825156.chain_1874	2
scaffold_28	alt_acceptor	1649350	1649351	-	asmbl_38000	none	STRG.29355.2	1	STRG.29355.1	1
scaffold_13	starts_in_intron	14561813	14561813	-	asmbl_10202	none	blat.proc3825156.chain_1269	1	STRG.16504.3,STRG.16504.5,blat.proc3825156.chain_1270	3
scaffold_12	alt_donor	13167263	13167264	-	asmbl_8926	none	STRG.15204.2	1	STRG.15204.1	1
scaffold_21	retained_intron	407848	408231	-	asmbl_27312,asmbl_27314,asmbl_27315	none	Trinity_GG_13230_c0_g1_i3,Trinity_GG_13230_c0_g1_i5,Trinity_GG_13230_c0_g1_i7,blat.proc3825160.chain_863,blat.proc3825160.chain_866,blat.proc3825160.chain_867	6	STRG.23739.1,Trinity_GG_13230_c0_g1_i1,Trinity_GG_13230_c0_g1_i6,Trinity_GG_13230_c0_g1_i8,blat.proc3825160.chain_862,blat.proc3825160.chain_864,blat.proc3825160.chain_868	7
scaffold_19	alternate_exon	8893089	8893770	-	asmbl_22320	none	STRG.22346.1,blat.proc3825158.chain_3126	2	STRG.22346.2	1
scaffold_10	ends_in_intron	380877	380877	-	asmbl_3951	none	Trinity_GG_6631_c0_g1_i4,blat.proc3825154.chain_457	2	STRG.11922.1,STRG.11922.2,STRG.11922.3,STRG.11922.4,Trinity_GG_6631_c0_g1_i1,Trinity_GG_6631_c0_g1_i5,blat.proc3825154.chain_456,blat.proc3825154.chain_460,blat.proc3825154.chain_461,blat.proc3825154.chain_462	10
scaffold_4	spliced_intron	16912391	16912492	+	asmbl_42008	none	STRG.5280.1	1	STRG.5280.4	1
scaffold_27	alternate_exon	627069	627300	-	asmbl_36705	none	Trinity_GG_15996_c0_g1_i1,blat.proc3825162.chain_1828	2	STRG.28583.3,blat.proc3825162.chain_1825	2
scaffold_7	starts_in_intron	14919369	14919369	+	asmbl_50403	none	Trinity_GG_22591_c0_g1_i1,blat.proc3825168.chain_2021	2	STRG.9509.1,blat.proc3825168.chain_2022	2
scaffold_11	retained_intron	4747068	4747472	+	asmbl_5511	none	Trinity_GG_24745_c0_g1_i2,blat.proc3825170.chain_2063	2	STRG.13568.1	1
scaffold_26	starts_in_intron	4594342	4594342	-	asmbl_35569,asmbl_35572	none	blat.proc3825162.chain_1435,blat.proc3825162.chain_1437	2	STRG.28182.1,blat.proc3825162.chain_1436	2
scaffold_8	alt_acceptor	18424595	18424596	+	asmbl_53547	none	STRG.10739.2,Trinity_GG_23252_c0_g1_i2,blat.proc3825168.chain_3239	3	STRG.10739.1,Trinity_GG_23252_c0_g1_i3,blat.proc3825168.chain_3240	3
scaffold_26	alt_acceptor	7544927	7544928	+	asmbl_35126	none	STRG.28388.1	1	Trinity_GG_33002_c0_g1_i1,blat.proc3825178.chain_1474	2
scaffold_7	retained_exon	8508687	8508719	+	asmbl_50000	none	STRG.9078.3,blat.proc3825168.chain_1607	2	STRG.9078.1,blat.proc3825168.chain_1604	2
scaffold_11	skipped_exon	6711357	6713812	-	asmbl_6736	none	STRG.13716.5	1	STRG.13716.1,STRG.13716.2,STRG.13716.4,blat.proc3825154.chain_2286,blat.proc3825154.chain_2287	5
scaffold_27	alt_acceptor	3903532	3903533	-	asmbl_36928	none	STRG.28860.1,blat.proc3825162.chain_2027	2	STRG.28860.2	1
scaffold_12	retained_intron	16402135	16403321	+	asmbl_8168,asmbl_8169,asmbl_8170,asmbl_8171	none	STRG.15402.1,STRG.15402.2,STRG.15402.3,STRG.15402.6,Trinity_GG_25733_c0_g1_i1,Trinity_GG_25733_c0_g1_i10,Trinity_GG_25733_c0_g1_i3,Trinity_GG_25733_c0_g1_i7,blat.proc3825172.chain_40,blat.proc3825172.chain_43,blat.proc3825172.chain_44,blat.proc3825172.chain_45	12	STRG.15402.4,STRG.15402.5,blat.proc3825172.chain_46	3
scaffold_27	alt_acceptor	3000383	3000384	+	asmbl_36154,asmbl_36155	none	STRG.28786.3,STRG.28786.4	2	STRG.28786.1,STRG.28786.2,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	7
scaffold_9	alt_donor	9657137	9657138	+	asmbl_54224	none	STRG.11344.2	1	blat.proc3825170.chain_160	1
scaffold_4	starts_in_intron	8946054	8946054	+	asmbl_41595	none	blat.proc3825166.chain_1159	1	STRG.4702.1,blat.proc3825166.chain_1160	2
scaffold_23	spliced_intron	2610389	2611916	-	asmbl_30752,asmbl_30754,asmbl_30756	none	STRG.25729.1,blat.proc3825160.chain_2923,blat.proc3825160.chain_2925,blat.proc3825160.chain_2926	4	blat.proc3825160.chain_2924	1
scaffold_14	spliced_intron	1069783	1069872	+	asmbl_11788,asmbl_11793,asmbl_11794,asmbl_11797	none	STRG.16766.3,STRG.16766.4,STRG.16766.5,blat.proc3825172.chain_1536,blat.proc3825172.chain_1539	5	blat.proc3825172.chain_1533	1
scaffold_10	alt_donor	11970172	11970173	+	asmbl_3508,asmbl_3509,asmbl_3510,asmbl_3515	none	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.6	4	STRG.12838.5	1
scaffold_13	skipped_exon	7526169	7528668	-	asmbl_9897	none	STRG.16048.1,Trinity_GG_9022_c0_g1_i1,blat.proc3825156.chain_946	3	STRG.16048.2,Trinity_GG_9022_c0_g1_i4,blat.proc3825156.chain_947	3
scaffold_27	ends_in_intron	128854	128854	-	asmbl_36640	none	Trinity_GG_15985_c0_g1_i8,blat.proc3825162.chain_1803	2	STRG.28543.2,STRG.28543.3,Trinity_GG_15985_c0_g1_i5,Trinity_GG_15985_c0_g1_i6,blat.proc3825162.chain_1801,blat.proc3825162.chain_1802	6
scaffold_27	skipped_exon	2550132	2552911	-	asmbl_36828	none	STRG.28734.1,blat.proc3825162.chain_1985	2	STRG.28734.2,blat.proc3825162.chain_1984	2
scaffold_20	alternate_exon	11479733	11479918	+	asmbl_27054	none	Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_847	2	STRG.23653.1,STRG.23653.2,STRG.23653.3,STRG.23653.4,Trinity_GG_30405_c0_g1_i1,Trinity_GG_30405_c0_g1_i2,blat.proc3825176.chain_845,blat.proc3825176.chain_846	8
scaffold_14	alternate_exon	14387536	14387585	+	asmbl_12545	none	STRG.17700.2	1	STRG.17700.3,blat.proc3825172.chain_2406	2
scaffold_8	starts_in_intron	12911926	12911926	-	asmbl_52253	none	blat.proc3825152.chain_2735	1	STRG.10480.2,STRG.10480.3,STRG.10480.4	3
scaffold_19	skipped_exon	8180860	8182966	+	asmbl_21497	none	STRG.22268.1	1	blat.proc3825174.chain_3199	1
scaffold_2	spliced_intron	884927	885046	+	asmbl_24124,asmbl_24125,asmbl_24126	none	STRG.1564.2,STRG.1564.3,blat.proc3825164.chain_1624	3	blat.proc3825164.chain_1623	1
scaffold_15	alt_acceptor	9665936	9665937	-	asmbl_14394	none	STRG.18477.2	1	STRG.18477.1,STRG.18477.3,blat.proc3825156.chain_3351	3
scaffold_7	starts_in_intron	2503181	2503181	-	asmbl_50754	none	STRG.8685.2	1	STRG.8685.1	1
scaffold_26	ends_in_intron	2269246	2269246	+	asmbl_34743	none	STRG.27961.2,blat.proc3825178.chain_1007	2	STRG.27961.4	1
scaffold_14	alt_donor	1608787	1608788	+	asmbl_11832	none	STRG.16804.2	1	STRG.16804.1,Trinity_GG_26566_c0_g2_i2,blat.proc3825172.chain_1588	3
scaffold_11	alt_acceptor	8078029	8078030	-	asmbl_6826	none	STRG.13815.2,Trinity_GG_7709_c0_g1_i3,blat.proc3825154.chain_2326	3	STRG.13815.1,STRG.13815.3,STRG.13815.4,STRG.13815.5,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i5,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2330,blat.proc3825154.chain_2331,blat.proc3825154.chain_2332	10
scaffold_7	alt_acceptor	280387	280388	+	asmbl_49547,asmbl_49549,asmbl_49550	none	STRG.8603.2,Trinity_GG_22049_c0_g1_i2,Trinity_GG_22049_c0_g1_i3,blat.proc3825168.chain_1111	4	STRG.8603.1	1
scaffold_17	retained_exon	12370509	12370560	-	asmbl_18326,asmbl_18328,asmbl_18329	none	STRG.20776.1,STRG.20776.3,blat.proc3825158.chain_1711	3	STRG.20776.2	1
scaffold_16	retained_intron	6232211	6232250	-	asmbl_17156	none	blat.proc3825158.chain_513	1	STRG.19360.1	1
scaffold_14	alt_donor	7027527	7027528	+	asmbl_12125	none	STRG.17153.1,blat.proc3825172.chain_1933	2	blat.proc3825172.chain_1932	1
scaffold_2	retained_intron	14561522	14561619	+	asmbl_24949,asmbl_24962	none	Trinity_GG_18675_c0_g1_i21,blat.proc3825164.chain_2655,blat.proc3825164.chain_2659	3	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11
scaffold_19	starts_in_intron	3683357	3683357	+	asmbl_21335,asmbl_21336,asmbl_21337	none	STRG.22058.5,blat.proc3825174.chain_3084,blat.proc3825174.chain_3085	3	STRG.22058.1,STRG.22058.2,STRG.22058.3	3
scaffold_54	retained_intron	7823	8417	-	asmbl_46551	none	STRG.30066.2,Trinity_GG_16870_c1_g1_i1,blat.proc3825162.chain_3239,blat.proc3825162.chain_3241	4	STRG.30066.1,blat.proc3825162.chain_3240	2
scaffold_14	spliced_intron	2375443	2375890	-	asmbl_12935,asmbl_12937,asmbl_12939,asmbl_12941	none	STRG.16854.2,STRG.16854.3,STRG.16854.4,STRG.16854.6	4	STRG.16854.1,Trinity_GG_9462_c0_g1_i7	2
scaffold_10	retained_exon	9554352	9554426	+	asmbl_3403	none	STRG.12711.1	1	STRG.12711.2,STRG.12711.3	2
scaffold_6	spliced_intron	5054843	5054934	-	asmbl_48389,asmbl_48390,asmbl_48391,asmbl_48395	none	STRG.7486.1,STRG.7486.3,STRG.7486.5,blat.proc3825150.chain_3641,blat.proc3825150.chain_3645	5	STRG.7486.2,Trinity_GG_4225_c0_g1_i12,blat.proc3825150.chain_3643	3
scaffold_4	retained_exon	15007303	15008130	+	asmbl_41920	none	STRG.5108.1,blat.proc3825166.chain_1537	2	STRG.5108.2,blat.proc3825166.chain_1536	2
scaffold_21	retained_intron	5770329	5771473	-	asmbl_27694	none	blat.proc3825160.chain_1198	1	STRG.24114.1,STRG.24114.2,STRG.24114.3,blat.proc3825160.chain_1199,blat.proc3825160.chain_1200,blat.proc3825160.chain_1201,blat.proc3825160.chain_1203	7
scaffold_7	skipped_exon	8302442	8303074	+	asmbl_49984	none	STRG.9064.1,blat.proc3825168.chain_1571	2	blat.proc3825168.chain_1572	1
scaffold_13	retained_intron	3264232	3264348	+	asmbl_10676	none	blat.proc3825172.chain_404	1	STRG.15636.2,blat.proc3825172.chain_403	2
scaffold_10	skipped_exon	9060945	9062853	-	asmbl_4662	none	STRG.12655.1,blat.proc3825154.chain_1202	2	STRG.12655.2,blat.proc3825154.chain_1198	2
scaffold_9	retained_intron	9853052	9854248	+	asmbl_54266	none	blat.proc3825170.chain_206	1	STRG.11357.2	1
scaffold_27	spliced_intron	3000034	3000124	+	asmbl_36150,asmbl_36151,asmbl_36154,asmbl_36155,asmbl_36156,asmbl_36158,asmbl_36159	none	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	9	blat.proc3825178.chain_1902,blat.proc3825178.chain_1904	2
scaffold_21	alternate_exon	27165	27337	-	asmbl_27262	none	STRG.23712.1,Trinity_GG_13205_c0_g1_i1,blat.proc3825160.chain_816	3	STRG.23712.2,Trinity_GG_13205_c0_g1_i2,blat.proc3825160.chain_815	3
scaffold_17	spliced_intron	9868140	9868228	-	asmbl_18213,asmbl_18214,asmbl_18216	none	STRG.20601.1,STRG.20601.3,blat.proc3825158.chain_1630	3	STRG.20601.2,blat.proc3825158.chain_1631	2
scaffold_3	retained_intron	16038460	16038558	+	asmbl_40598	none	STRG.3885.2	1	STRG.3885.1,blat.proc3825166.chain_384,blat.proc3825166.chain_385	3
scaffold_19	retained_intron	13155142	13155525	-	asmbl_22604,asmbl_22606,asmbl_22607	none	STRG.22639.2,STRG.22639.3,blat.proc3825158.chain_3470,blat.proc3825158.chain_3471	4	blat.proc3825158.chain_3473	1
scaffold_11	starts_in_intron	7897646	7897646	+	asmbl_5693	none	Trinity_GG_24907_c0_g1_i1	1	STRG.13791.1,Trinity_GG_24907_c0_g1_i2	2
scaffold_28	ends_in_intron	2581324	2581324	+	asmbl_37379	none	Trinity_GG_33633_c2_g1_i1,blat.proc3825178.chain_2620	2	STRG.29432.1,blat.proc3825178.chain_2618	2
scaffold_10	spliced_intron	3065795	3066072	-	asmbl_4157	none	STRG.12130.1,blat.proc3825154.chain_664	2	blat.proc3825154.chain_666	1
scaffold_1	spliced_intron	12754534	12756067	+	asmbl_2251	none	STRG.896.3,Trinity_GG_17878_c0_g1_i3,blat.proc3825164.chain_1093	3	STRG.896.1,Trinity_GG_17878_c0_g1_i2,blat.proc3825164.chain_1094	3
scaffold_6	alternate_exon	1750690	1750959	-	asmbl_48122	none	STRG.7232.7	1	STRG.7232.1,STRG.7232.4,STRG.7232.5,blat.proc3825150.chain_3311,blat.proc3825150.chain_3312,blat.proc3825150.chain_3315	6
scaffold_18	spliced_intron	1899014	1899766	-	asmbl_19653,asmbl_19659,asmbl_19660,asmbl_19661,asmbl_19663,asmbl_19664,asmbl_19665	none	STRG.21081.10,STRG.21081.6,STRG.21081.7,STRG.21081.8,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2017	7	STRG.21081.3,STRG.21081.9,blat.proc3825158.chain_2010,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2018	6
scaffold_16	alternate_exon	1781017	1786445	+	asmbl_16088	none	STRG.19102.3,blat.proc3825174.chain_21	2	STRG.19102.2,Trinity_GG_27789_c0_g1_i4,blat.proc3825174.chain_20	3
scaffold_5	spliced_intron	5039918	5039996	-	asmbl_44024	none	STRG.5957.1,Trinity_GG_3352_c0_g1_i1,blat.proc3825150.chain_2159	3	Trinity_GG_3352_c0_g1_i2,blat.proc3825150.chain_2160	2
scaffold_22	alt_donor	10945256	10945257	-	asmbl_29634	none	blat.proc3825160.chain_2600	1	blat.proc3825160.chain_2597	1
scaffold_14	starts_in_intron	13382177	13382177	-	asmbl_13639	none	blat.proc3825156.chain_2403	1	STRG.17630.1,STRG.17630.2,blat.proc3825156.chain_2402,blat.proc3825156.chain_2404	4
scaffold_15	retained_exon	13560493	13560666	-	asmbl_14642	none	STRG.18786.3	1	STRG.18786.1,STRG.18786.2,blat.proc3825156.chain_3629,blat.proc3825156.chain_3630	4
scaffold_11	alt_donor	3737411	3737412	-	asmbl_6569,asmbl_6570	none	STRG.13497.1,blat.proc3825154.chain_2060,blat.proc3825154.chain_2061	3	STRG.13497.2,blat.proc3825154.chain_2062	2
scaffold_4	alt_acceptor	17524253	17524254	-	asmbl_43282	none	STRG.5338.2	1	STRG.5338.1,blat.proc3825150.chain_1523	2
scaffold_18	ends_in_intron	141073	141073	+	asmbl_20258	none	Trinity_GG_28833_c0_g1_i2	1	STRG.20965.1	1
scaffold_7	retained_exon	18784052	18784164	+	asmbl_50535	none	STRG.9696.1	1	STRG.9696.3	1
scaffold_9	alt_acceptor	17852000	17852001	+	asmbl_54655,asmbl_54657	none	STRG.11873.2,Trinity_GG_23881_c0_g1_i5,blat.proc3825170.chain_570	3	Trinity_GG_23881_c0_g1_i10,blat.proc3825170.chain_573	2
scaffold_3	retained_intron	18372738	18372846	-	asmbl_39620	none	blat.proc3825150.chain_229	1	STRG.4051.1	1
scaffold_12	retained_exon	7958741	7958822	+	asmbl_7797,asmbl_7800	none	STRG.14861.1,blat.proc3825170.chain_3356,blat.proc3825170.chain_3359	3	STRG.14861.2,STRG.14861.3,blat.proc3825170.chain_3358	3
scaffold_14	alt_donor	11341170	11341171	-	asmbl_13472	none	STRG.17464.2,blat.proc3825156.chain_2287	2	STRG.17464.1	1
scaffold_16	spliced_intron	2386305	2386343	-	asmbl_16966	none	STRG.19133.3	1	STRG.19133.1,blat.proc3825158.chain_271	2
scaffold_3	spliced_intron	17849572	17849654	-	asmbl_39577	none	STRG.4005.2	1	STRG.4005.1,blat.proc3825150.chain_190	2
scaffold_17	starts_in_intron	6698624	6698624	+	asmbl_18869	none	Trinity_GG_28442_c0_g1_i2,blat.proc3825174.chain_1162	2	STRG.20330.1,blat.proc3825174.chain_1161	2
scaffold_20	alt_acceptor	5544470	5544471	+	asmbl_26625	none	STRG.23181.2	1	STRG.23181.1	1
scaffold_3	spliced_intron	13462730	13462851	+	asmbl_40439	none	STRG.3697.1,blat.proc3825166.chain_151	2	blat.proc3825166.chain_149,blat.proc3825166.chain_150	2
scaffold_7	alt_donor	2510091	2510092	-	asmbl_50757	none	STRG.8686.1,Trinity_GG_4956_c0_g1_i2,blat.proc3825152.chain_1161	3	Trinity_GG_4956_c0_g1_i3,blat.proc3825152.chain_1162	2
scaffold_13	alt_donor	8116730	8116731	+	asmbl_11105	none	STRG.16092.2,Trinity_GG_26150_c0_g1_i3,blat.proc3825172.chain_849	3	STRG.16092.1,Trinity_GG_26150_c0_g1_i1,blat.proc3825172.chain_850	3
scaffold_1	alt_acceptor	5646051	5646052	+	asmbl_1742	none	STRG.360.5,blat.proc3825164.chain_427	2	STRG.360.1,STRG.360.2,STRG.360.3,STRG.360.4,blat.proc3825164.chain_424,blat.proc3825164.chain_425,blat.proc3825164.chain_426,blat.proc3825164.chain_428	8
scaffold_20	retained_intron	10384363	10384458	+	asmbl_26958	none	blat.proc3825176.chain_672	1	STRG.23583.4	1
scaffold_12	skipped_exon	7617691	7618187	-	asmbl_8605,asmbl_8607,asmbl_8609	none	STRG.14840.2,STRG.14840.3,STRG.14840.6	3	STRG.14840.1,STRG.14840.4,STRG.14840.5,blat.proc3825154.chain_3358,blat.proc3825154.chain_3359	5
scaffold_2	retained_intron	7776424	7777128	+	asmbl_24567	none	Trinity_GG_18457_c0_g1_i2,blat.proc3825164.chain_2177	2	STRG.2073.1,Trinity_GG_18457_c0_g1_i1	2
scaffold_28	alt_acceptor	2653606	2653607	+	asmbl_37395	none	STRG.29457.1	1	STRG.29457.2,blat.proc3825178.chain_2671	2
scaffold_23	alt_donor	3053562	3053563	-	asmbl_30782	none	STRG.25753.2,blat.proc3825160.chain_2894	2	STRG.25753.1,blat.proc3825160.chain_2895	2
scaffold_16	retained_intron	5395039	5395131	+	asmbl_16214	none	blat.proc3825174.chain_183	1	STRG.19288.1,Trinity_GG_27867_c0_g1_i3,blat.proc3825174.chain_180,blat.proc3825174.chain_181	4
scaffold_1	skipped_exon	14964792	14965935	+	asmbl_2418	none	STRG.1073.2	1	STRG.1073.1,blat.proc3825164.chain_1156	2
scaffold_5	alternate_exon	12915612	12915967	-	asmbl_44491,asmbl_44493	none	STRG.6524.2,blat.proc3825150.chain_2709,blat.proc3825150.chain_2710	3	STRG.6524.1,blat.proc3825150.chain_2711	2
scaffold_4	retained_intron	4692582	4692952	+	asmbl_41297,asmbl_41300	none	blat.proc3825166.chain_813,blat.proc3825166.chain_819	2	STRG.4379.1,blat.proc3825166.chain_814,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_818,blat.proc3825166.chain_820	6
scaffold_9	alt_donor	8028439	8028440	-	asmbl_55116	none	STRG.11231.3	1	STRG.11231.1,STRG.11231.2,blat.proc3825152.chain_3476,blat.proc3825152.chain_3477	4
scaffold_17	starts_in_intron	13444988	13444988	-	asmbl_18367	none	blat.proc3825158.chain_1838	1	STRG.20820.1,blat.proc3825158.chain_1837	2
scaffold_23	spliced_intron	1992483	1992563	+	asmbl_31367	none	STRG.25666.1,blat.proc3825176.chain_2563	2	STRG.25666.2	1
scaffold_28	starts_in_intron	3840731	3840731	+	asmbl_37496	none	blat.proc3825178.chain_2779	1	STRG.29579.1,STRG.29579.2,blat.proc3825178.chain_2778,blat.proc3825178.chain_2780	4
scaffold_23	skipped_exon	4100717	4102604	-	asmbl_30831,asmbl_30833	none	STRG.25826.2,blat.proc3825160.chain_3031	2	STRG.25826.1	1
scaffold_13	alt_donor	11981351	11981352	-	asmbl_10117	none	blat.proc3825156.chain_1205	1	STRG.16331.1	1
scaffold_26	spliced_intron	9773422	9774402	+	asmbl_35262,asmbl_35263,asmbl_35266,asmbl_35267	none	STRG.28516.1,STRG.28516.2,STRG.28516.3,STRG.28516.7,blat.proc3825178.chain_1649	5	STRG.28516.4,Trinity_GG_33091_c0_g1_i3,blat.proc3825178.chain_1653	3
scaffold_23	retained_intron	362285	362464	-	asmbl_30591,asmbl_30592,asmbl_30594,asmbl_30598,asmbl_30600	none	STRG.25564.1,STRG.25564.2,STRG.25564.3,Trinity_GG_14303_c0_g1_i3,blat.proc3825160.chain_2720,blat.proc3825160.chain_2723,blat.proc3825160.chain_2727	7	STRG.25564.4,Trinity_GG_14303_c0_g1_i4,blat.proc3825160.chain_2721,blat.proc3825160.chain_2726	4
scaffold_5	starts_in_intron	7028731	7028731	+	asmbl_45476,asmbl_45477	none	STRG.6116.3,STRG.6116.4	2	STRG.6116.1,STRG.6116.2	2
scaffold_1	retained_exon	15280154	15280373	+	asmbl_2438	none	STRG.1094.3,blat.proc3825164.chain_1250	2	STRG.1094.1	1
scaffold_16	retained_exon	318495	318641	+	asmbl_16025	none	STRG.19023.2,blat.proc3825172.chain_3680	2	STRG.19023.1,Trinity_GG_27740_c0_g1_i3,blat.proc3825172.chain_3678	3
scaffold_25	retained_exon	8707290	8707409	+	asmbl_33756,asmbl_33759	none	STRG.27702.3,blat.proc3825178.chain_762	2	STRG.27702.1,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_763,blat.proc3825178.chain_768	4
scaffold_15	skipped_exon	6883631	6884459	-	asmbl_14260	none	STRG.18301.4,Trinity_GG_10293_c0_g1_i10,blat.proc3825156.chain_3154	3	STRG.18301.2,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	3
scaffold_1	spliced_intron	14273795	14273994	+	asmbl_2363,asmbl_2364	none	STRG.1023.1,STRG.1023.2,blat.proc3825164.chain_1208,blat.proc3825164.chain_1209	4	blat.proc3825164.chain_1210	1
scaffold_14	ends_in_intron	13216430	13216430	+	asmbl_12460	none	blat.proc3825172.chain_2350	1	STRG.17621.1,STRG.17621.2,STRG.17621.3	3
scaffold_22	alt_acceptor	7573294	7573295	+	asmbl_30193	none	STRG.25095.1,blat.proc3825176.chain_2212	2	STRG.25095.2,blat.proc3825176.chain_2211	2
scaffold_8	alt_acceptor	2690453	2690454	+	asmbl_52737	none	STRG.9810.3	1	STRG.9810.1,STRG.9810.2	2
scaffold_2	spliced_intron	2871451	2871540	-	asmbl_22931,asmbl_22933,asmbl_22942	none	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1662,blat.proc3825148.chain_1663,blat.proc3825148.chain_1664	5	blat.proc3825148.chain_1661	1
scaffold_20	retained_exon	2290959	2291069	+	asmbl_26480	none	STRG.22968.1,blat.proc3825176.chain_165	2	STRG.22968.2	1
scaffold_4	alt_acceptor	3272747	3272748	+	asmbl_41165	none	blat.proc3825166.chain_628	1	STRG.4255.1,blat.proc3825166.chain_625,blat.proc3825166.chain_626	3
scaffold_21	spliced_intron	7009393	7009561	-	asmbl_27772,asmbl_27773,asmbl_27774,asmbl_27775,asmbl_27778	none	STRG.24233.1,STRG.24233.2,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393	6	blat.proc3825160.chain_1394,blat.proc3825160.chain_1395	2
scaffold_1	alternate_exon	22369668	22371747	+	asmbl_2689	none	STRG.1491.1	1	STRG.1491.6	1
scaffold_11	alt_donor	15833671	15833672	+	asmbl_6133,asmbl_6134	none	STRG.14321.1,STRG.14321.2,blat.proc3825170.chain_2798,blat.proc3825170.chain_2800	4	blat.proc3825170.chain_2797	1
scaffold_13	alternate_exon	15636036	15636464	+	asmbl_11520	none	STRG.16607.1,blat.proc3825172.chain_1408	2	STRG.16607.2	1
scaffold_1	ends_in_intron	4571525	4571525	-	asmbl_203,asmbl_208,asmbl_209,asmbl_210	none	STRG.285.5,Trinity_GG_95_c0_g1_i6,blat.proc3825148.chain_151,blat.proc3825148.chain_155,blat.proc3825148.chain_157	5	STRG.285.1,blat.proc3825148.chain_159,blat.proc3825148.chain_160	3
scaffold_12	spliced_intron	7626482	7626549	-	asmbl_8612	none	STRG.14843.2	1	STRG.14843.1,Trinity_GG_8248_c0_g1_i2,blat.proc3825154.chain_3290	3
scaffold_16	starts_in_intron	14607809	14607809	-	asmbl_17478	none	blat.proc3825158.chain_913	1	STRG.19858.3,STRG.19858.4,STRG.19858.5,blat.proc3825158.chain_911,blat.proc3825158.chain_912,blat.proc3825158.chain_914	6
scaffold_2	alternate_exon	8055710	8055809	-	asmbl_23306	none	blat.proc3825148.chain_2117	1	STRG.2094.3,Trinity_GG_1165_c1_g1_i1	2
scaffold_2	alt_acceptor	14537060	14537061	+	asmbl_24945	none	STRG.2455.1,blat.proc3825164.chain_2722	2	STRG.2455.2,STRG.2455.3,blat.proc3825164.chain_2723	3
scaffold_15	starts_in_intron	4094948	4094948	+	asmbl_15122	none	Trinity_GG_27272_c0_g1_i1,blat.proc3825172.chain_2818	2	STRG.18154.1,STRG.18154.2,blat.proc3825172.chain_2821,blat.proc3825172.chain_2822	4
scaffold_5	alt_donor	15418252	15418253	-	asmbl_44664	none	STRG.6728.1,blat.proc3825150.chain_2880	2	STRG.6728.3	1
scaffold_14	alt_donor	9276923	9276924	-	asmbl_13362,asmbl_13363,asmbl_13365,asmbl_13367	none	STRG.17338.1,STRG.17338.4,blat.proc3825156.chain_2200,blat.proc3825156.chain_2203,blat.proc3825156.chain_2204	5	STRG.17338.2,blat.proc3825156.chain_2202	2
scaffold_12	retained_exon	3008647	3008798	-	asmbl_8345	none	STRG.14541.1,blat.proc3825154.chain_3019	2	STRG.14541.2	1
scaffold_21	alt_acceptor	5280792	5280793	-	asmbl_27638,asmbl_27639,asmbl_27646	none	STRG.24066.2,STRG.24066.5,Trinity_GG_13405_c0_g1_i4,blat.proc3825160.chain_1168	4	STRG.24066.3,STRG.24066.4,blat.proc3825160.chain_1167	3
scaffold_5	alternate_exon	135750	135830	+	asmbl_45074	none	STRG.5577.3	1	STRG.5577.1	1
scaffold_23	spliced_intron	2038445	2038542	+	asmbl_31373,asmbl_31374	none	STRG.25686.1,blat.proc3825176.chain_2601,blat.proc3825176.chain_2602	3	blat.proc3825176.chain_2603	1
scaffold_3	ends_in_intron	19834011	19834011	-	asmbl_39664	none	blat.proc3825150.chain_257	1	STRG.4098.1,blat.proc3825150.chain_255	2
scaffold_355	alt_donor	6457	6458	+	asmbl_41038	none	STRG.30299.2	1	STRG.30299.1	1
scaffold_5	alt_acceptor	5043028	5043029	+	asmbl_45325,asmbl_45329	none	STRG.5958.3,STRG.5958.4	2	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2126,blat.proc3825166.chain_2127,blat.proc3825166.chain_2128	6
scaffold_17	ends_in_intron	8303489	8303489	-	asmbl_18085,asmbl_18086	none	STRG.20446.2,blat.proc3825158.chain_1503	2	STRG.20446.1,blat.proc3825158.chain_1502	2
scaffold_2	retained_exon	7042599	7042724	+	asmbl_24522,asmbl_24523,asmbl_24524	none	STRG.2044.1,Trinity_GG_18468_c0_g1_i1,Trinity_GG_18468_c0_g1_i3,blat.proc3825164.chain_2194,blat.proc3825164.chain_2195	5	Trinity_GG_18468_c0_g1_i2,Trinity_GG_18468_c0_g1_i5,blat.proc3825164.chain_2192,blat.proc3825164.chain_2193	4
scaffold_9	retained_exon	3374637	3374669	+	asmbl_53894	none	blat.proc3825168.chain_3419	1	STRG.10943.1,blat.proc3825168.chain_3420	2
scaffold_6	alt_donor	5195619	5195620	+	asmbl_46919	none	Trinity_GG_21344_c0_g1_i16,Trinity_GG_21344_c0_g1_i2,blat.proc3825166.chain_3553,blat.proc3825166.chain_3556	4	STRG.7496.1,STRG.7496.2,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3554	8
scaffold_285	alternate_exon	84	733	+	asmbl_38621	none	STRG.30262.1,blat.proc3825178.chain_3357,blat.proc3825178.chain_3358	3	blat.proc3825178.chain_3361	1
scaffold_8	spliced_intron	1207473	1207512	-	asmbl_51699	none	STRG.9750.1	1	STRG.9750.2	1
scaffold_11	ends_in_intron	6253484	6253484	+	asmbl_5618	none	STRG.13692.3	1	STRG.13692.1,STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237,blat.proc3825170.chain_2239,blat.proc3825170.chain_2242	6
scaffold_1	spliced_intron	9165141	9165231	-	asmbl_515,asmbl_517,asmbl_518	none	STRG.612.1,blat.proc3825148.chain_613,blat.proc3825148.chain_614	3	blat.proc3825148.chain_612	1
scaffold_10	alt_acceptor	11918879	11918880	-	asmbl_4801,asmbl_4802	none	STRG.12830.1,blat.proc3825154.chain_1433,blat.proc3825154.chain_1434	3	STRG.12830.2	1
scaffold_20	alternate_exon	1513068	1513873	-	asmbl_25580	none	STRG.22870.3	1	STRG.22870.2	1
scaffold_1950	alt_acceptor	1067	1068	-	asmbl_22762	none	STRG.30680.1	1	STRG.30680.2	1
scaffold_17	starts_in_intron	3997656	3997656	+	asmbl_18753,asmbl_18757,asmbl_18758	none	blat.proc3825174.chain_1031,blat.proc3825174.chain_1033,blat.proc3825174.chain_1034	3	STRG.20160.1,STRG.20160.2,blat.proc3825174.chain_1032	3
scaffold_23	alt_acceptor	10764266	10764267	-	asmbl_31156	none	STRG.26268.1,blat.proc3825160.chain_3381	2	STRG.26268.2	1
scaffold_21	alt_donor	1174729	1174730	-	asmbl_27389	none	STRG.23795.3	1	STRG.23795.1,STRG.23795.2,Trinity_GG_13264_c0_g1_i2,Trinity_GG_13264_c0_g1_i3,blat.proc3825160.chain_929,blat.proc3825160.chain_930	6
scaffold_9	starts_in_intron	1711694	1711694	-	asmbl_54841	none	STRG.10863.1	1	STRG.10863.2,blat.proc3825152.chain_3111	2
scaffold_9	starts_in_intron	14051928	14051928	+	asmbl_54526	none	blat.proc3825170.chain_473	1	STRG.11674.1,Trinity_GG_23822_c0_g1_i2,blat.proc3825170.chain_474	3
scaffold_19	spliced_intron	2696720	2696863	+	asmbl_21273	none	STRG.21955.1	1	Trinity_GG_29454_c0_g1_i1	1
scaffold_29	ends_in_intron	8994	8994	-	asmbl_38630	none	STRG.30013.3	1	STRG.30013.1,STRG.30013.2,blat.proc3825162.chain_3176	3
scaffold_3	retained_exon	18495876	18495899	-	asmbl_39628	none	STRG.4047.2	1	STRG.4047.1,blat.proc3825150.chain_224	2
scaffold_2	retained_exon	18709526	18709606	+	asmbl_25232,asmbl_25233	none	STRG.2748.1,Trinity_GG_18860_c1_g1_i4,blat.proc3825164.chain_3005,blat.proc3825164.chain_3006	4	STRG.2748.2,blat.proc3825164.chain_3004	2
scaffold_13	starts_in_intron	8012736	8012736	+	asmbl_11092,asmbl_11093	none	STRG.16081.2,blat.proc3825172.chain_787	2	STRG.16081.1,blat.proc3825172.chain_788	2
scaffold_2	spliced_intron	7782690	7783100	+	asmbl_24571,asmbl_24573,asmbl_24575	none	STRG.2075.2,STRG.2075.3,STRG.2075.5,blat.proc3825164.chain_2227,blat.proc3825164.chain_2229	5	STRG.2075.4,Trinity_GG_18484_c0_g1_i1,blat.proc3825164.chain_2230,blat.proc3825164.chain_2237	4
scaffold_4	skipped_exon	7150900	7152429	+	asmbl_41470,asmbl_41471	none	STRG.4559.2,STRG.4559.5	2	STRG.4559.1,STRG.4559.3,STRG.4559.4,blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	5
scaffold_15	alt_acceptor	3687306	3687307	-	asmbl_14113,asmbl_14114	none	STRG.18149.2,STRG.18149.3	2	blat.proc3825156.chain_2988	1
scaffold_24	alternate_exon	8740433	8740912	-	asmbl_33100	none	blat.proc3825162.chain_184	1	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_183	4
scaffold_18	alt_donor	8913580	8913581	-	asmbl_20051	none	STRG.21558.1	1	STRG.21558.4,STRG.21558.6,STRG.21558.7,blat.proc3825158.chain_2447,blat.proc3825158.chain_2449,blat.proc3825158.chain_2453	6
scaffold_16	retained_exon	8711878	8711984	-	asmbl_17254,asmbl_17255	none	STRG.19504.2,blat.proc3825158.chain_626,blat.proc3825158.chain_627	3	STRG.19504.1,STRG.19504.3,blat.proc3825158.chain_624,blat.proc3825158.chain_625	4
scaffold_14	retained_intron	6281800	6282048	+	asmbl_12057,asmbl_12058,asmbl_12059	none	STRG.17079.1,STRG.17079.2,STRG.17079.4,blat.proc3825172.chain_1848,blat.proc3825172.chain_1853	5	STRG.17079.3,blat.proc3825172.chain_1849	2
scaffold_19	alternate_exon	8371	8525	+	asmbl_21167	none	STRG.21816.3	1	STRG.21816.1	1
scaffold_3	spliced_intron	13988803	13989050	+	asmbl_40476,asmbl_40479	none	STRG.3744.1,STRG.3744.4,blat.proc3825166.chain_191	3	STRG.3744.2,Trinity_GG_19386_c0_g1_i2,blat.proc3825166.chain_190	3
scaffold_1	alternate_exon	20990735	20990907	+	asmbl_2668	none	STRG.1435.2,Trinity_GG_18143_c0_g1_i3,blat.proc3825164.chain_1565	3	STRG.1435.3,Trinity_GG_18143_c0_g1_i2,blat.proc3825164.chain_1567	3
scaffold_340	alt_acceptor	2915	2916	+	asmbl_41011,asmbl_41015	none	STRG.30295.2,STRG.30295.3	2	STRG.30295.1	1
scaffold_8	ends_in_intron	17401845	17401845	-	asmbl_52457	none	Trinity_GG_5925_c0_g1_i5,blat.proc3825152.chain_2910	2	STRG.10664.1,Trinity_GG_5925_c0_g1_i1,Trinity_GG_5925_c0_g1_i3,blat.proc3825152.chain_2911,blat.proc3825152.chain_2913	5
scaffold_1	alt_donor	974812	974813	-	asmbl_41	none	STRG.58.2	1	blat.proc3825148.chain_81	1
scaffold_1	retained_intron	1993732	1994147	+	asmbl_1527	none	Trinity_GG_17420_c1_g1_i1,blat.proc3825164.chain_264	2	STRG.128.1,Trinity_GG_17420_c0_g1_i2,blat.proc3825164.chain_261,blat.proc3825164.chain_262,blat.proc3825164.chain_263	5
scaffold_18	retained_exon	8400470	8400594	+	asmbl_20831	none	STRG.21513.1,blat.proc3825174.chain_2580	2	STRG.21513.2,STRG.21513.3,STRG.21513.5,blat.proc3825174.chain_2581	4
scaffold_13	alternate_exon	364759	365317	-	asmbl_9305	none	STRG.15442.2,Trinity_GG_8663_c0_g1_i17,blat.proc3825156.chain_296	3	STRG.15442.1,STRG.15442.3,STRG.15442.4,Trinity_GG_8663_c0_g1_i19,Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g1_i6,blat.proc3825156.chain_290,blat.proc3825156.chain_295,blat.proc3825156.chain_298	9
scaffold_14	starts_in_intron	67897	67897	+	asmbl_11742	none	Trinity_GG_26507_c0_g1_i2,blat.proc3825172.chain_1472	2	STRG.16702.1	1
scaffold_8	ends_in_intron	16506794	16506794	-	asmbl_52407	none	Trinity_GG_5934_c3_g1_i1,blat.proc3825152.chain_2944	2	STRG.10629.1,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	9
scaffold_20	spliced_intron	11438436	11438575	+	asmbl_27045,asmbl_27046	none	STRG.23652.2,STRG.23652.3,blat.proc3825176.chain_819,blat.proc3825176.chain_820	4	STRG.23652.1,blat.proc3825176.chain_817,blat.proc3825176.chain_818	3
scaffold_3	retained_intron	5926294	5926496	-	asmbl_38875	none	blat.proc3825148.chain_3100	1	STRG.3252.1,blat.proc3825148.chain_3097,blat.proc3825148.chain_3098,blat.proc3825148.chain_3099	4
scaffold_17	alt_acceptor	11611613	11611614	-	asmbl_18295	none	STRG.20715.2,blat.proc3825158.chain_1742	2	STRG.20715.1,blat.proc3825158.chain_1743	2
scaffold_13	alt_donor	4376481	4376482	+	asmbl_10786	none	STRG.15764.3	1	STRG.15764.1,STRG.15764.2,STRG.15764.4	3
scaffold_18	skipped_exon	3636836	3638415	+	asmbl_20466,asmbl_20467,asmbl_20468	none	STRG.21184.1,STRG.21184.2,STRG.21184.4,blat.proc3825174.chain_2122,blat.proc3825174.chain_2123	5	STRG.21184.3,blat.proc3825174.chain_2121	2
scaffold_21	alternate_exon	5792251	5792388	-	asmbl_27700	none	STRG.24109.1,blat.proc3825160.chain_1154	2	STRG.24109.2,blat.proc3825160.chain_1153	2
scaffold_6	alt_donor	12697720	12697721	-	asmbl_48843	none	STRG.8028.2,Trinity_GG_4533_c0_g1_i3,blat.proc3825152.chain_376	3	STRG.8028.1,Trinity_GG_4533_c0_g1_i1,blat.proc3825152.chain_375	3
scaffold_6	spliced_intron	7171271	7171397	+	asmbl_47052,asmbl_47055	none	STRG.7628.1,STRG.7628.4	2	STRG.7628.2,STRG.7628.3,Trinity_GG_21499_c0_g1_i2,blat.proc3825168.chain_81	4
scaffold_13	retained_intron	7655940	7656087	+	asmbl_11064	none	blat.proc3825172.chain_824	1	STRG.16054.1,STRG.16054.2,blat.proc3825172.chain_820,blat.proc3825172.chain_821,blat.proc3825172.chain_825	5
scaffold_26	retained_exon	9841947	9842107	-	asmbl_35793	none	STRG.28545.1,Trinity_GG_15923_c0_g1_i2,blat.proc3825162.chain_1672	3	STRG.28545.2	1
scaffold_7	starts_in_intron	3378428	3378428	+	asmbl_49687	none	Trinity_GG_22134_c0_g1_i1,blat.proc3825168.chain_1238	2	STRG.8742.1,Trinity_GG_22134_c0_g1_i2,blat.proc3825168.chain_1239	3
scaffold_1	retained_intron	10951165	10951333	+	asmbl_2037,asmbl_2040	none	STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_862	3	STRG.715.1,STRG.715.2,STRG.715.3,blat.proc3825164.chain_858,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_863,blat.proc3825164.chain_864	8
scaffold_11	alternate_exon	8373823	8373988	-	asmbl_6862	none	STRG.13853.1	1	STRG.13853.2	1
scaffold_17	ends_in_intron	2637871	2637871	-	asmbl_17772	none	blat.proc3825158.chain_1095	1	STRG.20059.1,blat.proc3825158.chain_1096	2
scaffold_2	ends_in_intron	17014898	17014898	-	asmbl_23709	none	blat.proc3825148.chain_2524	1	STRG.2614.1,STRG.2614.2,blat.proc3825148.chain_2525	3
scaffold_6	skipped_exon	14622505	14623328	-	asmbl_49017	none	STRG.8228.6	1	STRG.8228.7,blat.proc3825152.chain_630	2
scaffold_6	alt_donor	11012004	11012005	-	asmbl_48731	none	STRG.7916.3	1	STRG.7916.2,STRG.7916.4,blat.proc3825152.chain_319	3
scaffold_11	alt_donor	7804289	7804290	-	asmbl_6806	none	STRG.13783.2,blat.proc3825154.chain_2367	2	STRG.13783.1,blat.proc3825154.chain_2366	2
scaffold_50	alt_acceptor	26713	26714	-	asmbl_46484	none	STRG.30058.3	1	STRG.30058.2,blat.proc3825162.chain_3227	2
scaffold_5	retained_intron	16206282	16206377	+	asmbl_46060	none	blat.proc3825166.chain_2952	1	STRG.6809.2	1
scaffold_3	skipped_exon	8191936	8193365	-	asmbl_39020	none	Trinity_GG_1828_c8_g1_i1	1	STRG.3440.1,blat.proc3825148.chain_3282	2
scaffold_15	retained_intron	14650043	14650231	+	asmbl_15692	none	Trinity_GG_27664_c0_g1_i1	1	STRG.18879.1,Trinity_GG_27664_c0_g1_i3	2
scaffold_15	alt_donor	4983129	4983130	-	asmbl_14181	none	blat.proc3825156.chain_3070	1	STRG.18211.1,STRG.18211.3,blat.proc3825156.chain_3072	3
scaffold_11	retained_intron	13541271	13541378	+	asmbl_6061,asmbl_6062	none	STRG.14211.2,Trinity_GG_25145_c0_g1_i1,blat.proc3825170.chain_2754	3	STRG.14211.1,Trinity_GG_25145_c0_g1_i2,blat.proc3825170.chain_2755	3
scaffold_18	alt_acceptor	632851	632852	+	asmbl_20312	none	STRG.21004.1,blat.proc3825174.chain_1853	2	STRG.21004.3	1
scaffold_16	starts_in_intron	11953346	11953346	+	asmbl_16620	none	blat.proc3825174.chain_556	1	STRG.19723.1,STRG.19723.3,Trinity_GG_28067_c0_g1_i3,Trinity_GG_28067_c0_g1_i4,blat.proc3825174.chain_555,blat.proc3825174.chain_557	6
scaffold_27	retained_exon	973582	975044	+	asmbl_35968,asmbl_35975	none	STRG.28595.1,Trinity_GG_33133_c0_g1_i11,blat.proc3825178.chain_1720	3	Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	2
scaffold_3	starts_in_intron	6189687	6189687	-	asmbl_38911	none	STRG.3266.4	1	blat.proc3825148.chain_3124	1
scaffold_8	spliced_intron	10484487	10484569	+	asmbl_53172	none	STRG.10286.1,blat.proc3825168.chain_2872	2	blat.proc3825168.chain_2873	1
scaffold_6	retained_intron	13005188	13005430	-	asmbl_48860	none	STRG.8068.8,Trinity_GG_4595_c3_g1_i1,blat.proc3825152.chain_498	3	STRG.8068.7,blat.proc3825152.chain_494	2
scaffold_10	retained_intron	9071539	9071698	+	asmbl_3362	none	Trinity_GG_24297_c1_g1_i1,blat.proc3825170.chain_1293	2	STRG.12659.1,STRG.12659.2,STRG.12659.3,blat.proc3825170.chain_1292	4
scaffold_11	starts_in_intron	8073696	8073696	-	asmbl_6833	none	Trinity_GG_7709_c1_g1_i4,blat.proc3825154.chain_2337	2	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335,blat.proc3825154.chain_2336	4
scaffold_23	alt_donor	7979585	7979586	-	asmbl_31068	none	STRG.26106.1,blat.proc3825160.chain_3273	2	STRG.26106.2	1
scaffold_6	retained_intron	13317856	13318018	+	asmbl_47524	none	STRG.8092.1,Trinity_GG_21760_c0_g1_i1,blat.proc3825168.chain_601	3	STRG.8092.2,Trinity_GG_21760_c0_g1_i2,blat.proc3825168.chain_600	3
scaffold_2	alt_acceptor	16079556	16079557	-	asmbl_23663,asmbl_23664	none	STRG.2557.1,STRG.2557.3	2	STRG.2557.2,blat.proc3825148.chain_2488	2
scaffold_5	spliced_intron	5754426	5756080	+	asmbl_45370	none	STRG.5996.2,blat.proc3825166.chain_2158	2	STRG.5996.1,Trinity_GG_20558_c0_g1_i4	2
scaffold_4	alt_acceptor	13184671	13184672	-	asmbl_42980	none	STRG.4962.1,blat.proc3825150.chain_1156	2	STRG.4962.3,blat.proc3825150.chain_1153	2
scaffold_20	alternate_exon	11482107	11482674	+	asmbl_27054,asmbl_27059	none	STRG.23653.3,Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_847	3	STRG.23653.4	1
scaffold_18	spliced_intron	12400332	12400435	-	asmbl_20143,asmbl_20146	none	STRG.21709.2,STRG.21709.3	2	STRG.21709.1,STRG.21709.4	2
scaffold_13	starts_in_intron	9255479	9255479	+	asmbl_11188	none	Trinity_GG_26166_c1_g1_i1,blat.proc3825172.chain_882	2	STRG.16187.1,blat.proc3825172.chain_879,blat.proc3825172.chain_880	3
scaffold_5	spliced_intron	9704095	9704702	-	asmbl_44295	none	blat.proc3825150.chain_2502,blat.proc3825150.chain_2503	2	STRG.6293.3,Trinity_GG_3551_c0_g1_i17,blat.proc3825150.chain_2501	3
scaffold_25	spliced_intron	6253400	6253539	+	asmbl_33605,asmbl_33606	none	STRG.27510.1,blat.proc3825178.chain_625,blat.proc3825178.chain_626	3	Trinity_GG_32481_c0_g1_i2,blat.proc3825178.chain_623,blat.proc3825178.chain_624	3
scaffold_23	retained_exon	5080495	5080566	-	asmbl_30880	none	STRG.25891.1,blat.proc3825160.chain_3068	2	STRG.25891.2,blat.proc3825160.chain_3069	2
scaffold_5	alt_acceptor	1097095	1097096	-	asmbl_43821	none	STRG.5661.1	1	blat.proc3825150.chain_1910	1
scaffold_6	alt_donor	10147743	10147744	-	asmbl_48665	none	blat.proc3825152.chain_193	1	STRG.7847.1,blat.proc3825152.chain_192	2
scaffold_8	retained_intron	4082268	4082465	+	asmbl_52811	none	blat.proc3825168.chain_2481	1	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2479,blat.proc3825168.chain_2480	4
scaffold_10	spliced_intron	5006780	5006917	-	asmbl_4328,asmbl_4329,asmbl_4331	none	STRG.12325.1,STRG.12325.2,Trinity_GG_6889_c0_g1_i1,blat.proc3825154.chain_893,blat.proc3825154.chain_894,blat.proc3825154.chain_895	6	blat.proc3825154.chain_896	1
scaffold_22	starts_in_intron	10012398	10012398	-	asmbl_29575	none	blat.proc3825160.chain_2455	1	STRG.25352.1,blat.proc3825160.chain_2454	2
scaffold_21	alt_donor	10121769	10121770	+	asmbl_28863	none	STRG.24477.3	1	STRG.24477.2,blat.proc3825176.chain_1626	2
scaffold_4	alt_acceptor	4095810	4095811	+	asmbl_41217,asmbl_41221	none	STRG.4315.4,blat.proc3825166.chain_703	2	STRG.4315.1,STRG.4315.3,blat.proc3825166.chain_704,blat.proc3825166.chain_707	4
scaffold_2	alt_acceptor	4243577	4243578	-	asmbl_23055	none	STRG.1859.1,blat.proc3825148.chain_1780	2	STRG.1859.2,blat.proc3825148.chain_1781	2
scaffold_13	spliced_intron	7935012	7935207	-	asmbl_9913,asmbl_9914,asmbl_9915,asmbl_9919	none	STRG.16070.1,STRG.16070.2,STRG.16070.4,blat.proc3825156.chain_874,blat.proc3825156.chain_875,blat.proc3825156.chain_876	6	STRG.16070.3,blat.proc3825156.chain_877,blat.proc3825156.chain_878	3
scaffold_13	alt_acceptor	3705936	3705937	-	asmbl_9564	none	STRG.15688.4	1	STRG.15688.1,STRG.15688.3	2
scaffold_10	alt_acceptor	13883400	13883401	+	asmbl_3625	none	STRG.12976.2,Trinity_GG_24460_c0_g1_i4,blat.proc3825170.chain_1588	3	STRG.12976.1,blat.proc3825170.chain_1589,blat.proc3825170.chain_1590	3
scaffold_14	retained_intron	8213726	8214121	-	asmbl_13254,asmbl_13255	none	blat.proc3825156.chain_2055,blat.proc3825156.chain_2056	2	STRG.17234.1,STRG.17234.2,STRG.17234.3,STRG.17234.4,STRG.17234.5,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	8
scaffold_1	retained_intron	12916164	12916271	+	asmbl_2275	none	blat.proc3825164.chain_1119	1	STRG.922.1,STRG.922.2,blat.proc3825164.chain_1116,blat.proc3825164.chain_1118	4
scaffold_16	spliced_intron	1510085	1511404	+	asmbl_16083,asmbl_16084	none	STRG.19099.2,blat.proc3825174.chain_11	2	STRG.19099.1,blat.proc3825174.chain_10	2
scaffold_9	alt_acceptor	10242514	10242515	+	asmbl_54278	none	STRG.11371.1,blat.proc3825170.chain_224,blat.proc3825170.chain_230	3	STRG.11371.2	1
scaffold_7	spliced_intron	12415910	12416003	-	asmbl_51215,asmbl_51216,asmbl_51218	none	STRG.9346.1,blat.proc3825152.chain_1701,blat.proc3825152.chain_1704,blat.proc3825152.chain_1705	4	blat.proc3825152.chain_1703	1
scaffold_17	alt_donor	10054357	10054358	-	asmbl_18228,asmbl_18229	none	STRG.20621.1,STRG.20621.2,blat.proc3825158.chain_1672	3	blat.proc3825158.chain_1671	1
scaffold_1	spliced_intron	5750406	5750501	+	asmbl_1785,asmbl_1786,asmbl_1787,asmbl_1788	none	STRG.378.1,STRG.378.2,STRG.378.3,blat.proc3825164.chain_513,blat.proc3825164.chain_514,blat.proc3825164.chain_516	6	blat.proc3825164.chain_517	1
scaffold_1	retained_intron	5962878	5963181	-	asmbl_306	none	Trinity_GG_210_c0_g2_i1,blat.proc3825148.chain_364	2	STRG.399.1,blat.proc3825148.chain_363	2
scaffold_12	retained_exon	4559127	4559150	-	asmbl_8401	none	STRG.14631.1,blat.proc3825154.chain_3107	2	blat.proc3825154.chain_3109	1
scaffold_1	alternate_exon	11445097	11445204	+	asmbl_2109	none	STRG.753.2,blat.proc3825164.chain_854	2	STRG.753.1,blat.proc3825164.chain_855	2
scaffold_21	starts_in_intron	457363	457363	-	asmbl_27323	none	blat.proc3825160.chain_854	1	STRG.23740.1,blat.proc3825160.chain_855,blat.proc3825160.chain_856	3
scaffold_2	retained_intron	19299385	19299486	-	asmbl_23859,asmbl_23863	none	STRG.2798.1,Trinity_GG_1511_c0_g1_i1,blat.proc3825148.chain_2685,blat.proc3825148.chain_2686,blat.proc3825148.chain_2689	5	STRG.2798.2,blat.proc3825148.chain_2690	2
scaffold_18	skipped_exon	824174	824807	+	asmbl_20327,asmbl_20328	none	STRG.21008.1,STRG.21008.3,blat.proc3825174.chain_1872	3	blat.proc3825174.chain_1871	1
scaffold_2	retained_intron	7876359	7876445	+	asmbl_24585	none	Trinity_GG_18501_c0_g1_i18,blat.proc3825164.chain_2294	2	STRG.2082.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i14,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2287,blat.proc3825164.chain_2289,blat.proc3825164.chain_2290,blat.proc3825164.chain_2292	9
scaffold_5	alternate_exon	10528370	10528466	+	asmbl_45678,asmbl_45680	none	STRG.6341.1,STRG.6341.2,Trinity_GG_20761_c0_g1_i1,blat.proc3825166.chain_2538	4	Trinity_GG_20761_c0_g1_i2,blat.proc3825166.chain_2539	2
scaffold_6	alt_acceptor	4600505	4600506	+	asmbl_46891	none	STRG.7441.2	1	STRG.7441.1,blat.proc3825166.chain_3567	2
scaffold_13	starts_in_intron	11600814	11600814	+	asmbl_11287,asmbl_11288	none	STRG.16316.7,blat.proc3825172.chain_1033	2	STRG.16316.1,STRG.16316.3,blat.proc3825172.chain_1028,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	9
scaffold_5	skipped_exon	7740584	7741185	+	asmbl_45506	none	STRG.6160.3	1	STRG.6160.1,STRG.6160.2,blat.proc3825166.chain_2297	3
scaffold_17	spliced_intron	1353517	1353628	+	asmbl_18604	none	STRG.19973.1,blat.proc3825174.chain_856	2	STRG.19973.2,Trinity_GG_28251_c0_g1_i2,blat.proc3825174.chain_857	3
scaffold_3	starts_in_intron	11341820	11341820	-	asmbl_39151	none	STRG.3565.1	1	STRG.3565.2	1
scaffold_18	alt_acceptor	3634978	3634979	+	asmbl_20468	none	STRG.21184.4	1	STRG.21184.1,STRG.21184.2,STRG.21184.3,blat.proc3825174.chain_2121,blat.proc3825174.chain_2122,blat.proc3825174.chain_2123	6
scaffold_1	starts_in_intron	5771446	5771446	+	asmbl_1796	none	STRG.384.3,blat.proc3825164.chain_434	2	STRG.384.1,STRG.384.2,blat.proc3825164.chain_435,blat.proc3825164.chain_436	4
scaffold_14	retained_intron	15831084	15831226	-	asmbl_13755	none	blat.proc3825156.chain_2636	1	STRG.17828.2	1
scaffold_2	alternate_exon	6517217	6517408	+	asmbl_24474	none	STRG.2022.3	1	STRG.2022.5	1
scaffold_19	alternate_exon	4793391	4793476	-	asmbl_22129	none	STRG.22056.1,blat.proc3825158.chain_2887	2	STRG.22056.3,blat.proc3825158.chain_2886	2
scaffold_1	retained_intron	16095601	16095685	-	asmbl_972	none	STRG.1129.1,Trinity_GG_582_c0_g1_i1,blat.proc3825148.chain_1119	3	STRG.1129.3	1
scaffold_5	retained_exon	13245174	13245236	+	asmbl_45868,asmbl_45869	none	STRG.6568.1,blat.proc3825166.chain_2750,blat.proc3825166.chain_2751	3	STRG.6568.2,STRG.6568.3,blat.proc3825166.chain_2749	3
scaffold_18	alternate_exon	1922500	1922563	+	asmbl_20393	none	STRG.21085.2,blat.proc3825174.chain_2002	2	STRG.21085.1,blat.proc3825174.chain_2003	2
scaffold_3	alt_acceptor	5916628	5916629	-	asmbl_38871	none	STRG.3250.2	1	STRG.3250.1,blat.proc3825148.chain_3024	2
scaffold_2	alternate_exon	17715161	17718109	-	asmbl_23742,asmbl_23743	none	STRG.2669.1,STRG.2669.2,blat.proc3825148.chain_2606,blat.proc3825148.chain_2607	4	STRG.2669.4	1
scaffold_7	alt_acceptor	1237949	1237950	+	asmbl_49600	none	Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	2	STRG.8637.1,STRG.8637.4,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i15,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i4,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1079	11
scaffold_14	alt_acceptor	8277347	8277348	+	asmbl_12213	none	STRG.17251.4,blat.proc3825172.chain_2028	2	STRG.17251.1,blat.proc3825172.chain_2029	2
scaffold_18	retained_intron	7867713	7867862	+	asmbl_20798,asmbl_20803,asmbl_20806,asmbl_20807	none	STRG.21488.4,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i11,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2453	7	STRG.21488.3,STRG.21488.5,Trinity_GG_29146_c0_g1_i10,Trinity_GG_29146_c0_g1_i3,blat.proc3825174.chain_2450,blat.proc3825174.chain_2455	6
scaffold_25	alt_acceptor	7905436	7905437	-	asmbl_34414	none	blat.proc3825162.chain_919	1	blat.proc3825162.chain_920	1
scaffold_560	spliced_intron	741	875	-	asmbl_46575	none	STRG.30375.1	1	Trinity_GG_17043_c0_g1_i2,blat.proc3825162.chain_3493	2
scaffold_2	retained_intron	15270688	15270822	+	asmbl_25011,asmbl_25019	none	blat.proc3825164.chain_2614,blat.proc3825164.chain_2618	2	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	5
scaffold_13	alt_donor	6603994	6603995	+	asmbl_10947	none	Trinity_GG_26063_c0_g1_i4,blat.proc3825172.chain_677	2	STRG.15951.1,STRG.15951.2,STRG.15951.3,STRG.15951.4,Trinity_GG_26063_c0_g1_i2,Trinity_GG_26063_c0_g1_i3,blat.proc3825172.chain_674,blat.proc3825172.chain_675,blat.proc3825172.chain_676	9
scaffold_12	spliced_intron	12307824	12308727	+	asmbl_7984,asmbl_7986,asmbl_7987	none	STRG.15133.1,STRG.15133.2,STRG.15133.5,blat.proc3825170.chain_3640	4	STRG.15133.3,Trinity_GG_25650_c0_g1_i1,blat.proc3825170.chain_3642	3
scaffold_27	alt_donor	2881786	2881787	+	asmbl_36145	none	blat.proc3825178.chain_1939	1	blat.proc3825178.chain_1942	1
scaffold_20	ends_in_intron	3238944	3238944	+	asmbl_26521	none	blat.proc3825176.chain_214	1	STRG.23046.2	1
scaffold_21	alternate_exon	254754	254929	-	asmbl_27282,asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27286,asmbl_27291	none	STRG.23725.2,STRG.23725.3,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_807,blat.proc3825160.chain_809	6	STRG.23725.1,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806	5
scaffold_21	alt_donor	257554	257555	-	asmbl_27283,asmbl_27286,asmbl_27289,asmbl_27290,asmbl_27292,asmbl_27293,asmbl_27294,asmbl_27296,asmbl_27297	none	STRG.23725.4,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_812	9	STRG.23725.2,STRG.23725.5,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_804,blat.proc3825160.chain_811,blat.proc3825160.chain_813	6
scaffold_24	alt_acceptor	9073111	9073112	+	asmbl_32490,asmbl_32491,asmbl_32496	none	STRG.26950.1,Trinity_GG_32214_c0_g1_i3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_148,blat.proc3825178.chain_149,blat.proc3825178.chain_150	7	STRG.26950.2,Trinity_GG_32214_c0_g1_i6,blat.proc3825178.chain_151	3
scaffold_24	skipped_exon	4280160	4281253	+	asmbl_32179	none	STRG.26586.3	1	STRG.26586.1,blat.proc3825176.chain_3529	2
scaffold_23	alternate_exon	2414859	2415142	+	asmbl_31404	none	STRG.25716.4,blat.proc3825176.chain_2677	2	STRG.25716.1,Trinity_GG_31508_c0_g1_i1,blat.proc3825176.chain_2676	3
scaffold_6	retained_exon	19116136	19116266	-	asmbl_49300	none	STRG.8585.1,Trinity_GG_4894_c0_g1_i2,blat.proc3825152.chain_1021	3	STRG.8585.3,STRG.8585.5,Trinity_GG_4894_c0_g1_i1,blat.proc3825152.chain_1022	4
scaffold_23	spliced_intron	2315712	2315927	+	asmbl_31390	none	STRG.25706.1,Trinity_GG_31496_c0_g1_i2,blat.proc3825176.chain_2643	3	STRG.25706.2,Trinity_GG_31496_c0_g1_i4,blat.proc3825176.chain_2645	3
scaffold_12	ends_in_intron	7973071	7973071	+	asmbl_7805	none	blat.proc3825170.chain_3414	1	STRG.14862.1,blat.proc3825170.chain_3413,blat.proc3825170.chain_3415,blat.proc3825170.chain_3417	4
scaffold_6	ends_in_intron	7496043	7496043	+	asmbl_47077	none	STRG.7652.1,blat.proc3825168.chain_78	2	STRG.7652.2	1
scaffold_13	spliced_intron	8955171	8955244	+	asmbl_11168	none	blat.proc3825172.chain_869	1	STRG.16167.1,blat.proc3825172.chain_870	2
scaffold_5	alt_donor	19031894	19031895	-	asmbl_44884,asmbl_44885,asmbl_44890,asmbl_44892	none	STRG.7022.2,STRG.7022.4,Trinity_GG_3910_c0_g1_i11,blat.proc3825150.chain_3131,blat.proc3825150.chain_3133,blat.proc3825150.chain_3135	6	STRG.7022.5	1
scaffold_4	retained_exon	3237420	3237960	-	asmbl_42423	none	STRG.4249.2,blat.proc3825150.chain_493	2	STRG.4249.4	1
scaffold_10	alternate_exon	7800308	7800445	-	asmbl_4556,asmbl_4557	none	STRG.12566.2,STRG.12566.3,blat.proc3825154.chain_1155	3	STRG.12566.1,blat.proc3825154.chain_1154	2
scaffold_1	alternate_exon	17619448	17619629	-	asmbl_1047	none	STRG.1225.2,blat.proc3825148.chain_1206	2	STRG.1225.1	1
scaffold_21	starts_in_intron	2954195	2954195	+	asmbl_28429	none	Trinity_GG_30578_c0_g1_i2,blat.proc3825176.chain_1158	2	STRG.23920.1,STRG.23920.2,blat.proc3825176.chain_1159	3
scaffold_2	starts_in_intron	16000263	16000263	+	asmbl_25093	none	Trinity_GG_18756_c0_g1_i1,blat.proc3825164.chain_2836	2	Trinity_GG_18756_c0_g1_i2,blat.proc3825164.chain_2837	2
scaffold_25	alternate_exon	3293326	3293494	-	asmbl_34121	none	STRG.27284.5	1	STRG.27284.2,STRG.27284.4,blat.proc3825162.chain_656	3
scaffold_26	alt_donor	665311	665312	-	asmbl_35388	none	STRG.27861.1	1	STRG.27861.2	1
scaffold_17	ends_in_intron	9867629	9867629	-	asmbl_18216,asmbl_18217	none	STRG.20601.2,STRG.20601.3	2	STRG.20601.1,blat.proc3825158.chain_1630,blat.proc3825158.chain_1631	3
scaffold_24	retained_intron	10423260	10423576	+	asmbl_32559	none	Trinity_GG_32235_c0_g1_i2,blat.proc3825178.chain_217	2	STRG.27007.1,blat.proc3825178.chain_215,blat.proc3825178.chain_216	3
scaffold_12	retained_intron	10187619	10188436	-	asmbl_8737	none	blat.proc3825154.chain_3519	1	STRG.14994.2,blat.proc3825154.chain_3517	2
scaffold_4	alt_acceptor	14679949	14679950	-	asmbl_43077	none	STRG.5102.1	1	STRG.5102.2,blat.proc3825150.chain_1226	2
scaffold_27	alt_acceptor	6782164	6782165	-	asmbl_37081	none	STRG.29050.2,blat.proc3825162.chain_2276	2	STRG.29050.1,STRG.29050.3,STRG.29050.4,blat.proc3825162.chain_2278,blat.proc3825162.chain_2279,blat.proc3825162.chain_2280	6
scaffold_8	alt_acceptor	5742349	5742350	+	asmbl_52903	none	STRG.9996.2	1	STRG.9996.1,blat.proc3825168.chain_2568	2
scaffold_13	alt_donor	6140069	6140070	-	asmbl_9774	none	STRG.15919.2	1	STRG.15919.3,Trinity_GG_8952_c0_g1_i1,blat.proc3825156.chain_808	3
scaffold_22	retained_intron	31144	31291	+	asmbl_29802	none	STRG.24664.1,blat.proc3825176.chain_1762	2	STRG.24664.2,blat.proc3825176.chain_1761	2
scaffold_1	alt_acceptor	15988382	15988383	+	asmbl_2459	none	STRG.1120.2	1	STRG.1120.1,blat.proc3825164.chain_1256	2
scaffold_25	starts_in_intron	6298108	6298108	-	asmbl_34342	none	blat.proc3825162.chain_901	1	STRG.27514.1,blat.proc3825162.chain_902,blat.proc3825162.chain_903	3
scaffold_18	alternate_exon	8883474	8883675	-	asmbl_20034,asmbl_20035	none	STRG.21551.4,STRG.21551.5,Trinity_GG_12055_c0_g1_i2,Trinity_GG_12055_c0_g1_i3,blat.proc3825158.chain_2469,blat.proc3825158.chain_2470	6	STRG.21551.1,blat.proc3825158.chain_2468,blat.proc3825158.chain_2471	3
scaffold_19	retained_intron	2917569	2917600	+	asmbl_21292	none	STRG.21979.1	1	blat.proc3825174.chain_2943	1
scaffold_19	skipped_exon	13173372	13173750	+	asmbl_21866	none	Trinity_GG_29797_c0_g1_i3,blat.proc3825174.chain_3602	2	STRG.22641.1,blat.proc3825174.chain_3604,blat.proc3825174.chain_3605	3
scaffold_1	spliced_intron	170665	170776	+	asmbl_1400	none	STRG.15.1,Trinity_GG_17335_c0_g2_i1,blat.proc3825164.chain_113	3	Trinity_GG_17335_c0_g2_i2,blat.proc3825164.chain_112	2
scaffold_23	alternate_exon	2209153	2222393	-	asmbl_30712,asmbl_30713	none	STRG.25698.2,STRG.25698.5	2	STRG.25698.4	1
scaffold_26	alt_acceptor	6707716	6707717	-	asmbl_35700	none	STRG.28371.2	1	STRG.28371.1,blat.proc3825162.chain_1604	2
scaffold_1	retained_intron	14200941	14201384	+	asmbl_2342,asmbl_2347	none	STRG.1008.2,Trinity_GG_17929_c0_g1_i7,blat.proc3825164.chain_1186,blat.proc3825164.chain_1190	4	Trinity_GG_17929_c0_g1_i4,Trinity_GG_17929_c0_g1_i5,blat.proc3825164.chain_1189,blat.proc3825164.chain_1191,blat.proc3825164.chain_1195	5
scaffold_19	retained_exon	8182278	8182286	+	asmbl_21498	none	blat.proc3825174.chain_3199	1	STRG.22268.1	1
scaffold_4	starts_in_intron	10954511	10954511	+	asmbl_41690	none	blat.proc3825166.chain_1243	1	STRG.4821.1,STRG.4821.2,blat.proc3825166.chain_1241,blat.proc3825166.chain_1244	4
scaffold_18	spliced_intron	9628583	9628642	-	asmbl_20065,asmbl_20066,asmbl_20067	none	blat.proc3825158.chain_2477,blat.proc3825158.chain_2480,blat.proc3825158.chain_2481	3	STRG.21576.1,STRG.21576.2,STRG.21576.4	3
scaffold_1	alt_donor	12175314	12175315	+	asmbl_2189,asmbl_2190	none	STRG.839.3,STRG.839.4,blat.proc3825164.chain_1014,blat.proc3825164.chain_1016	4	STRG.839.1,STRG.839.2,blat.proc3825164.chain_1012,blat.proc3825164.chain_1013	4
scaffold_2	retained_intron	8059384	8059478	-	asmbl_23308	none	STRG.2093.1,Trinity_GG_1159_c0_g1_i1,blat.proc3825148.chain_2110	3	STRG.2093.2,blat.proc3825148.chain_2111	2
scaffold_15	alt_acceptor	14513244	14513245	+	asmbl_15684,asmbl_15685	none	STRG.18865.1,STRG.18865.3,blat.proc3825172.chain_3488,blat.proc3825172.chain_3489	4	STRG.18865.2,blat.proc3825172.chain_3487	2
scaffold_16	spliced_intron	14510761	14510867	-	asmbl_17447,asmbl_17448,asmbl_17449	none	STRG.19830.1,blat.proc3825158.chain_874,blat.proc3825158.chain_875,blat.proc3825158.chain_877	4	Trinity_GG_11122_c0_g1_i3,blat.proc3825158.chain_878	2
scaffold_22	spliced_intron	497867	498164	+	asmbl_29858	none	STRG.24697.1	1	STRG.24697.2	1
scaffold_22	skipped_exon	4433987	4435158	-	asmbl_29266	none	STRG.24870.1,Trinity_GG_13911_c0_g1_i1,blat.proc3825160.chain_2091	3	Trinity_GG_13911_c0_g1_i2,blat.proc3825160.chain_2090	2
scaffold_8	skipped_exon	6161958	6163631	-	asmbl_51861,asmbl_51862,asmbl_51866,asmbl_51867,asmbl_51868	none	STRG.10030.1,STRG.10030.3,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275	7	STRG.10030.4,blat.proc3825152.chain_2276	2
scaffold_10	skipped_exon	13889774	13890094	-	asmbl_4938	none	STRG.12978.2	1	STRG.12978.1,blat.proc3825154.chain_1564	2
scaffold_2	alt_acceptor	11598062	11598063	+	asmbl_24764,asmbl_24765	none	STRG.2268.2,STRG.2268.3	2	STRG.2268.1,blat.proc3825164.chain_2376,blat.proc3825164.chain_2377,blat.proc3825164.chain_2378,blat.proc3825164.chain_2379,blat.proc3825164.chain_2380,blat.proc3825164.chain_2381,blat.proc3825164.chain_2382	8
scaffold_2	alt_donor	4848020	4848021	-	asmbl_23105	none	STRG.1902.1,blat.proc3825148.chain_1900	2	STRG.1902.2	1
scaffold_8	alt_acceptor	5434118	5434119	+	asmbl_52884,asmbl_52887	none	STRG.9974.1,STRG.9974.2,blat.proc3825168.chain_2432	3	blat.proc3825168.chain_2430	1
scaffold_13	ends_in_intron	14158286	14158286	+	asmbl_11425	none	blat.proc3825172.chain_1277	1	STRG.16461.1,blat.proc3825172.chain_1276,blat.proc3825172.chain_1278	3
scaffold_19	retained_intron	11832215	11832284	+	asmbl_21726	none	STRG.22511.1,Trinity_GG_29771_c0_g1_i2,blat.proc3825174.chain_3544	3	Trinity_GG_29771_c0_g1_i1,blat.proc3825174.chain_3543	2
scaffold_3	alternate_exon	3247287	3247731	+	asmbl_39948	none	STRG.3072.5	1	STRG.3072.2,STRG.3072.4	2
scaffold_15	retained_exon	15189129	15189219	+	asmbl_15728,asmbl_15732,asmbl_15736,asmbl_15741,asmbl_15742	none	STRG.18910.1,blat.proc3825172.chain_3520,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3529,blat.proc3825172.chain_3532	6	blat.proc3825172.chain_3530	1
scaffold_24	starts_in_intron	9082176	9082176	+	asmbl_32493	none	Trinity_GG_32214_c0_g2_i1,blat.proc3825178.chain_153	2	STRG.26950.2,Trinity_GG_32214_c0_g1_i4,blat.proc3825178.chain_146,blat.proc3825178.chain_150	4
scaffold_24	starts_in_intron	1231508	1231508	-	asmbl_32718	none	STRG.26393.2,blat.proc3825160.chain_3483	2	blat.proc3825160.chain_3482	1
scaffold_13	alt_acceptor	2352541	2352542	+	asmbl_10594	none	STRG.15564.12	1	STRG.15564.11,STRG.15564.2,STRG.15564.5	3
scaffold_18	starts_in_intron	7682122	7682122	+	asmbl_20784,asmbl_20785	none	STRG.21474.2,STRG.21474.3	2	STRG.21474.1,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	5
scaffold_2	alt_donor	2903659	2903660	-	asmbl_22946,asmbl_22948	none	STRG.1731.2,blat.proc3825148.chain_1613,blat.proc3825148.chain_1614	3	STRG.1731.1,blat.proc3825148.chain_1611,blat.proc3825148.chain_1612,blat.proc3825148.chain_1615	4
scaffold_23	starts_in_intron	10204624	10204624	-	asmbl_31133	none	STRG.26231.1	1	STRG.26231.2	1
scaffold_3	spliced_intron	17144659	17145212	+	asmbl_40656,asmbl_40657,asmbl_40658	none	STRG.3958.1,STRG.3958.4,blat.proc3825166.chain_458,blat.proc3825166.chain_460	4	STRG.3958.2,STRG.3958.3,Trinity_GG_19534_c0_g1_i5,Trinity_GG_19534_c0_g2_i1,blat.proc3825166.chain_457,blat.proc3825166.chain_459	6
scaffold_20	ends_in_intron	10411456	10411456	+	asmbl_26964	none	STRG.23581.1,blat.proc3825176.chain_743	2	STRG.23581.2	1
scaffold_16	spliced_intron	14513223	14513295	-	asmbl_17447	none	STRG.19830.1,blat.proc3825158.chain_875	2	blat.proc3825158.chain_874	1
scaffold_12	ends_in_intron	4103363	4103363	+	asmbl_7580	none	blat.proc3825170.chain_3163	1	STRG.14597.3	1
scaffold_3	retained_intron	14519626	14519705	-	asmbl_39389	none	Trinity_GG_2106_c0_g1_i5,blat.proc3825148.chain_3748	2	STRG.3792.1,Trinity_GG_2106_c0_g1_i2,Trinity_GG_2106_c0_g1_i4,blat.proc3825148.chain_3749,blat.proc3825150.chain_1	5
scaffold_12	retained_intron	9855571	9855735	-	asmbl_8697	none	STRG.14956.1,blat.proc3825154.chain_3462	2	blat.proc3825154.chain_3463	1
scaffold_17	spliced_intron	3990235	3990481	-	asmbl_17837	none	STRG.20158.3,blat.proc3825158.chain_1211	2	STRG.20158.2,STRG.20158.4	2
scaffold_21	spliced_intron	7009972	7010079	-	asmbl_27772,asmbl_27773,asmbl_27774,asmbl_27775	none	STRG.24233.1,blat.proc3825160.chain_1390,blat.proc3825160.chain_1391,blat.proc3825160.chain_1392,blat.proc3825160.chain_1393	5	STRG.24233.2	1
scaffold_2	skipped_exon	9860700	9863107	-	asmbl_23397	none	STRG.2188.2	1	STRG.2188.1,STRG.2188.3,blat.proc3825148.chain_2216	3
scaffold_4	starts_in_intron	6705245	6705245	+	asmbl_41425	none	blat.proc3825166.chain_910	1	STRG.4531.1,STRG.4531.2,blat.proc3825166.chain_909	3
scaffold_15	ends_in_intron	2800590	2800590	+	asmbl_15082	none	Trinity_GG_27219_c0_g1_i3,blat.proc3825172.chain_2740	2	STRG.18066.1,blat.proc3825172.chain_2739	2
scaffold_11	alt_acceptor	9950767	9950768	-	asmbl_6971	none	STRG.14013.2	1	STRG.14013.1,blat.proc3825154.chain_2520	2
scaffold_3	retained_intron	16336074	16336193	-	asmbl_39493	none	STRG.3907.1,Trinity_GG_2167_c1_g1_i1,blat.proc3825150.chain_107	3	STRG.3907.2	1
scaffold_1	alt_acceptor	20349586	20349587	+	asmbl_2624	none	STRG.1396.6	1	STRG.1396.1,blat.proc3825164.chain_1584	2
scaffold_4	retained_exon	10909340	10909425	-	asmbl_42866,asmbl_42867	none	STRG.4811.1,STRG.4811.2,blat.proc3825150.chain_956	3	STRG.4811.3	1
scaffold_22	ends_in_intron	4479472	4479472	+	asmbl_30009	none	Trinity_GG_31057_c0_g1_i1,blat.proc3825176.chain_1975	2	STRG.24874.1,Trinity_GG_31057_c0_g1_i2,blat.proc3825176.chain_1974	3
scaffold_7	starts_in_intron	6036935	6036935	+	asmbl_49835	none	Trinity_GG_22211_c0_g1_i2,blat.proc3825168.chain_1379	2	STRG.8909.1,Trinity_GG_22211_c0_g1_i1,blat.proc3825168.chain_1380	3
scaffold_10	retained_exon	926313	926810	-	asmbl_4009,asmbl_4010	none	STRG.11968.1,Trinity_GG_6668_c0_g1_i1,Trinity_GG_6668_c0_g1_i2,blat.proc3825154.chain_538,blat.proc3825154.chain_540	5	STRG.11968.2	1
scaffold_17	retained_exon	11035476	11035526	-	asmbl_18267	none	STRG.20664.3	1	STRG.20664.1	1
scaffold_14	alt_acceptor	6699546	6699547	+	asmbl_12102	none	STRG.17116.2	1	STRG.17116.1,blat.proc3825172.chain_1896	2
scaffold_369	retained_intron	1680	1727	+	asmbl_41052	none	STRG.30301.1	1	STRG.30301.2	1
scaffold_27	skipped_exon	3020508	3022748	+	asmbl_36162,asmbl_36163,asmbl_36169,asmbl_36172	none	STRG.28790.1,STRG.28790.2,blat.proc3825178.chain_1868,blat.proc3825178.chain_1873	4	blat.proc3825178.chain_1872	1
scaffold_23	retained_intron	6290063	6290359	-	asmbl_30967,asmbl_30969,asmbl_30970	none	STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i2,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3189,blat.proc3825160.chain_3190	7	STRG.25975.1,STRG.25975.3,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192,blat.proc3825160.chain_3193	9
scaffold_5	starts_in_intron	17226147	17226147	+	asmbl_46150,asmbl_46153	none	STRG.6896.2,Trinity_GG_21086_c0_g1_i8,blat.proc3825166.chain_3074	3	STRG.6896.1,blat.proc3825166.chain_3073,blat.proc3825166.chain_3076,blat.proc3825166.chain_3077	4
scaffold_17	alt_acceptor	8158243	8158244	+	asmbl_18938,asmbl_18939,asmbl_18940	none	STRG.20433.1,blat.proc3825174.chain_1263,blat.proc3825174.chain_1265	3	STRG.20433.2	1
scaffold_1	starts_in_intron	3276314	3276314	+	asmbl_1586	none	Trinity_GG_17456_c0_g1_i1	1	STRG.206.1,blat.proc3825164.chain_313,blat.proc3825164.chain_314	3
scaffold_2	ends_in_intron	7043315	7043315	+	asmbl_24520,asmbl_24522	none	Trinity_GG_18468_c0_g1_i1,Trinity_GG_18468_c0_g1_i2,blat.proc3825164.chain_2192,blat.proc3825164.chain_2194	4	STRG.2044.1,Trinity_GG_18468_c0_g1_i5,blat.proc3825164.chain_2193	3
scaffold_15	starts_in_intron	6884395	6884395	-	asmbl_14259	none	STRG.18301.6,Trinity_GG_10293_c1_g1_i1,blat.proc3825156.chain_3160	3	STRG.18301.2,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	3
scaffold_14	alternate_exon	14106449	14107281	-	asmbl_13678	none	STRG.17678.2	1	STRG.17678.1	1
scaffold_20	alt_acceptor	4478060	4478061	-	asmbl_25736,asmbl_25738,asmbl_25743	none	STRG.23127.2,STRG.23127.4,blat.proc3825160.chain_170	3	STRG.23127.1,blat.proc3825160.chain_167,blat.proc3825160.chain_168	3
scaffold_22	retained_intron	210328	210515	+	asmbl_29818,asmbl_29819,asmbl_29820,asmbl_29821,asmbl_29822	none	STRG.24676.1,STRG.24676.3,STRG.24676.5,Trinity_GG_30960_c1_g1_i1,blat.proc3825176.chain_1809	5	STRG.24676.2,blat.proc3825176.chain_1810	2
scaffold_23	alt_donor	2992369	2992370	-	asmbl_30769,asmbl_30770,asmbl_30771	none	STRG.25748.1,blat.proc3825160.chain_2952,blat.proc3825160.chain_2955	3	STRG.25748.3	1
scaffold_3	ends_in_intron	8176306	8176306	-	asmbl_39015	none	Trinity_GG_1828_c2_g1_i2,blat.proc3825148.chain_3274	2	STRG.3440.1	1
scaffold_13	alt_acceptor	5339633	5339634	+	asmbl_10840,asmbl_10841	none	STRG.15832.2,blat.proc3825172.chain_580	2	STRG.15832.1,blat.proc3825172.chain_578,blat.proc3825172.chain_579	3
scaffold_7	retained_intron	13866546	13867075	-	asmbl_51319	none	STRG.9480.2,blat.proc3825152.chain_1823	2	STRG.9480.4	1
scaffold_9	spliced_intron	17849137	17851107	+	asmbl_54657,asmbl_54658	none	STRG.11873.1,STRG.11873.2	2	STRG.11873.3,Trinity_GG_23881_c1_g1_i1,Trinity_GG_23881_c2_g1_i1,blat.proc3825170.chain_576,blat.proc3825170.chain_577	5
scaffold_20	retained_intron	12095031	12095381	-	asmbl_26222	none	STRG.23707.2,blat.proc3825160.chain_788	2	STRG.23707.3,blat.proc3825160.chain_787	2
scaffold_15	alternate_exon	2563725	2565933	+	asmbl_15063	none	STRG.18045.1,Trinity_GG_27217_c0_g1_i6	2	STRG.18045.2	1
scaffold_8	retained_exon	17464116	17464202	-	asmbl_52463	none	STRG.10667.1,blat.proc3825152.chain_2918	2	STRG.10667.2,blat.proc3825152.chain_2917	2
scaffold_9	starts_in_intron	5219996	5219996	+	asmbl_54004	none	STRG.11103.3,blat.proc3825168.chain_3556	2	STRG.11103.1,STRG.11103.2	2
scaffold_2	alt_donor	16403308	16403309	+	asmbl_25137,asmbl_25138	none	STRG.2582.1,blat.proc3825164.chain_2870,blat.proc3825164.chain_2872	3	blat.proc3825164.chain_2873	1
scaffold_5	alt_donor	12903820	12903821	+	asmbl_45832	none	STRG.6522.1,blat.proc3825166.chain_2698	2	STRG.6522.2	1
scaffold_24	ends_in_intron	3776984	3776984	-	asmbl_32854	none	blat.proc3825160.chain_3694	1	STRG.26561.1,blat.proc3825160.chain_3693	2
scaffold_4	retained_intron	5228399	5231130	-	asmbl_42572	none	STRG.4416.1,Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_651	3	STRG.4416.2,STRG.4416.4,blat.proc3825150.chain_648	3
scaffold_1	alt_acceptor	18275995	18275996	+	asmbl_2546	none	STRG.1277.2	1	STRG.1277.1,blat.proc3825164.chain_1413	2
scaffold_446	skipped_exon	5026	6422	+	asmbl_43717	none	STRG.30330.2,blat.proc3825178.chain_3421	2	STRG.30330.1,blat.proc3825178.chain_3420	2
scaffold_19	starts_in_intron	12116605	12116605	+	asmbl_21746	none	Trinity_GG_29786_c1_g1_i2,blat.proc3825174.chain_3575	2	STRG.22537.1,Trinity_GG_29786_c1_g1_i1,blat.proc3825174.chain_3574	3
scaffold_12	starts_in_intron	15263699	15263699	-	asmbl_9066	none	blat.proc3825156.chain_181	1	STRG.15338.1,STRG.15338.2,STRG.15338.3,STRG.15338.4,Trinity_GG_8603_c0_g1_i1,blat.proc3825156.chain_178,blat.proc3825156.chain_180	7
scaffold_10	retained_intron	5536926	5537113	+	asmbl_3182	none	STRG.12371.1,blat.proc3825170.chain_1053	2	STRG.12371.2,blat.proc3825170.chain_1054	2
scaffold_15	spliced_intron	5738488	5739051	-	asmbl_14231	none	STRG.18261.4	1	STRG.18261.1,STRG.18261.2,STRG.18261.3,blat.proc3825156.chain_3116	4
scaffold_14	retained_exon	9287989	9288015	-	asmbl_13370,asmbl_13372,asmbl_13373,asmbl_13374,asmbl_13375,asmbl_13377	none	STRG.17341.1,STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2168,blat.proc3825156.chain_2170,blat.proc3825156.chain_2173,blat.proc3825156.chain_2174,blat.proc3825156.chain_2175,blat.proc3825156.chain_2176	9	STRG.17341.2,blat.proc3825156.chain_2167,blat.proc3825156.chain_2169,blat.proc3825156.chain_2171	4
scaffold_9	alt_acceptor	11752020	11752021	+	asmbl_54375	none	STRG.11491.2	1	STRG.11491.1,Trinity_GG_23702_c2_g1_i1,blat.proc3825170.chain_281	3
scaffold_6	alt_donor	7543847	7543848	+	asmbl_47080	none	STRG.7656.1,blat.proc3825168.chain_88	2	STRG.7656.2,blat.proc3825168.chain_89	2
scaffold_2	ends_in_intron	14546857	14546857	+	asmbl_24950	none	Trinity_GG_18675_c0_g1_i11	1	STRG.2464.1,STRG.2464.2,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	10
scaffold_3	alternate_exon	14490491	14490536	-	asmbl_39380	none	Trinity_GG_2093_c1_g1_i2,blat.proc3825148.chain_3722	2	STRG.3790.1,blat.proc3825148.chain_3723	2
scaffold_7	skipped_exon	18392948	18394633	-	asmbl_51469	none	STRG.9670.4,blat.proc3825152.chain_2018	2	STRG.9670.1,STRG.9670.2,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016,blat.proc3825152.chain_2021	13
scaffold_15	alt_acceptor	15355142	15355143	+	asmbl_15755,asmbl_15761	none	STRG.18922.2,blat.proc3825172.chain_3562,blat.proc3825172.chain_3566	3	STRG.18922.3,Trinity_GG_27686_c0_g1_i7,blat.proc3825172.chain_3561,blat.proc3825172.chain_3563	4
scaffold_18	retained_intron	4308398	4308494	+	asmbl_20510	none	STRG.21222.2	1	STRG.21222.1	1
scaffold_11	retained_exon	8103025	8103388	+	asmbl_5729,asmbl_5731,asmbl_5732	none	STRG.13823.1,STRG.13823.3,blat.proc3825170.chain_2349,blat.proc3825170.chain_2352	4	STRG.13823.4	1
scaffold_14	spliced_intron	7216560	7216831	+	asmbl_12135,asmbl_12137	none	STRG.17156.1,blat.proc3825172.chain_1870,blat.proc3825172.chain_1871	3	Trinity_GG_26721_c0_g1_i3,blat.proc3825172.chain_1868,blat.proc3825172.chain_1869	3
scaffold_9	alternate_exon	13606215	13606569	+	asmbl_54504,asmbl_54505	none	STRG.11647.1,STRG.11647.2,blat.proc3825170.chain_455,blat.proc3825170.chain_456	4	STRG.11647.3,STRG.11647.4,blat.proc3825170.chain_453,blat.proc3825170.chain_454	4
scaffold_19	ends_in_intron	11490123	11490123	+	asmbl_21704,asmbl_21705	none	Trinity_GG_29743_c0_g1_i3,blat.proc3825174.chain_3480,blat.proc3825174.chain_3482	3	STRG.22487.1,Trinity_GG_29743_c0_g1_i4,blat.proc3825174.chain_3481	3
scaffold_10	alt_donor	4058814	4058815	-	asmbl_4252,asmbl_4256	none	STRG.12246.2,STRG.12246.3,blat.proc3825154.chain_824	3	STRG.12246.1,STRG.12246.4,blat.proc3825154.chain_820,blat.proc3825154.chain_822	4
scaffold_18	retained_exon	5905425	5905504	-	asmbl_19876	none	STRG.21337.4	1	STRG.21337.3	1
scaffold_2	starts_in_intron	5716687	5716687	+	asmbl_24433	none	STRG.1961.3	1	STRG.1961.1,STRG.1961.2,blat.proc3825164.chain_2084	3
scaffold_24	alt_acceptor	2515024	2515025	+	asmbl_32101	none	STRG.26469.4,blat.proc3825176.chain_3420	2	STRG.26469.1,STRG.26469.2,blat.proc3825176.chain_3422	3
scaffold_15	starts_in_intron	8933238	8933238	+	asmbl_15367	none	Trinity_GG_27424_c0_g1_i2,blat.proc3825172.chain_3100	2	STRG.18438.1,blat.proc3825172.chain_3099	2
scaffold_15	alternate_exon	10658089	10661330	-	asmbl_14445	none	blat.proc3825156.chain_3415	1	STRG.18558.2,blat.proc3825156.chain_3419,blat.proc3825156.chain_3420	3
scaffold_17	alt_donor	9621536	9621537	-	asmbl_18188	none	STRG.20582.1,Trinity_GG_11575_c0_g1_i2,blat.proc3825158.chain_1606	3	STRG.20582.2,Trinity_GG_11575_c0_g1_i1,blat.proc3825158.chain_1605	3
scaffold_27	skipped_exon	313987	314458	-	asmbl_36659	none	blat.proc3825162.chain_1725	1	STRG.28557.1,STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1728	5
scaffold_18	skipped_exon	10188895	10189251	-	asmbl_20101	none	STRG.21618.3	1	blat.proc3825158.chain_2524	1
scaffold_5	alt_donor	18821443	18821444	+	asmbl_46293	none	STRG.7010.3	1	STRG.7010.1,STRG.7010.2,blat.proc3825166.chain_3170	3
scaffold_9	retained_intron	15384599	15384899	+	asmbl_54562	none	blat.proc3825170.chain_502	1	STRG.11739.1,STRG.11739.3,blat.proc3825170.chain_501,blat.proc3825170.chain_503	4
scaffold_11	alt_donor	9136371	9136372	-	asmbl_6915	none	STRG.13953.3	1	blat.proc3825154.chain_2461	1
scaffold_10	alt_acceptor	4913501	4913502	+	asmbl_3132	none	STRG.12312.3	1	STRG.12313.1,blat.proc3825170.chain_1005	2
scaffold_11	starts_in_intron	4753000	4753000	+	asmbl_5514	none	STRG.13573.3	1	STRG.13573.1,STRG.13573.2,blat.proc3825170.chain_2101,blat.proc3825170.chain_2102	4
scaffold_1	spliced_intron	5543912	5544420	-	asmbl_271,asmbl_272	none	STRG.347.1,STRG.347.3	2	STRG.347.2,blat.proc3825148.chain_317	2
scaffold_13	alt_donor	7997256	7997257	-	asmbl_9926,asmbl_9928	none	STRG.16080.1,STRG.16080.3,blat.proc3825156.chain_972,blat.proc3825156.chain_973,blat.proc3825156.chain_975	5	STRG.16080.2,blat.proc3825156.chain_970,blat.proc3825156.chain_971	3
scaffold_10	alternate_exon	5561525	5561613	-	asmbl_4375	none	STRG.12387.2,blat.proc3825154.chain_857	2	STRG.12387.1,blat.proc3825154.chain_856	2
scaffold_21	alt_donor	7485704	7485705	-	asmbl_27823	none	STRG.24279.2	1	STRG.24279.1,blat.proc3825160.chain_1431	2
scaffold_16	alternate_exon	7228663	7240373	-	asmbl_17175	none	STRG.19399.4	1	STRG.19399.6	1
scaffold_16	starts_in_intron	8871749	8871749	-	asmbl_17262	none	blat.proc3825158.chain_641	1	STRG.19506.1,STRG.19506.2,blat.proc3825158.chain_642	3
scaffold_4	spliced_intron	13076283	13076428	+	asmbl_41776,asmbl_41781	none	STRG.4947.1,STRG.4947.2,blat.proc3825166.chain_1379	3	blat.proc3825166.chain_1380	1
scaffold_9	ends_in_intron	11815527	11815527	+	asmbl_54381,asmbl_54384	none	blat.proc3825170.chain_314,blat.proc3825170.chain_316	2	STRG.11498.1,blat.proc3825170.chain_315	2
scaffold_13	alt_acceptor	4016213	4016214	+	asmbl_10754	none	blat.proc3825172.chain_462	1	blat.proc3825172.chain_461	1
scaffold_23	ends_in_intron	5017587	5017587	-	asmbl_30877	none	Trinity_GG_14489_c0_g1_i3,blat.proc3825160.chain_3062	2	STRG.25885.1,blat.proc3825160.chain_3061,blat.proc3825160.chain_3063	3
scaffold_25	alt_acceptor	4877158	4877159	+	asmbl_33539	none	STRG.27423.1,Trinity_GG_32416_c0_g2_i3,blat.proc3825178.chain_501	3	STRG.27423.2	1
scaffold_13	alt_donor	6114519	6114520	+	asmbl_10913	none	STRG.15920.1,blat.proc3825172.chain_621	2	STRG.15920.2,blat.proc3825172.chain_620	2
scaffold_8	retained_intron	6028914	6029014	+	asmbl_52927	none	blat.proc3825168.chain_2613	1	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2614,blat.proc3825168.chain_2615	5
scaffold_23	retained_intron	5303321	5303517	+	asmbl_31554,asmbl_31555,asmbl_31556,asmbl_31557	none	STRG.25908.1,STRG.25908.2,STRG.25908.3,Trinity_GG_31605_c0_g1_i1,Trinity_GG_31605_c0_g1_i2,Trinity_GG_31605_c0_g1_i3,Trinity_GG_31605_c0_g1_i5,blat.proc3825176.chain_2847,blat.proc3825176.chain_2848,blat.proc3825176.chain_2849,blat.proc3825176.chain_2851	11	Trinity_GG_31605_c0_g1_i4,blat.proc3825176.chain_2850	2
scaffold_18	alt_acceptor	7864869	7864870	-	asmbl_19981	none	STRG.21486.2,blat.proc3825158.chain_2405	2	STRG.21486.1,blat.proc3825158.chain_2406	2
scaffold_6	spliced_intron	7170247	7171242	+	asmbl_47054	none	STRG.7628.3	1	STRG.7628.2,STRG.7628.4,Trinity_GG_21499_c0_g1_i2,blat.proc3825168.chain_81	4
scaffold_3	spliced_intron	6658411	6658488	+	asmbl_40104,asmbl_40108,asmbl_40110,asmbl_40111,asmbl_40112,asmbl_40114,asmbl_40115,asmbl_40116	none	STRG.3295.2,STRG.3295.3,STRG.3295.4,blat.proc3825164.chain_3559,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567	10	STRG.3295.1,blat.proc3825164.chain_3558,blat.proc3825164.chain_3564,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	6
scaffold_4	alternate_exon	13763508	13763615	-	asmbl_43004	none	STRG.4997.1,blat.proc3825150.chain_1143	2	STRG.4997.2,blat.proc3825150.chain_1144	2
scaffold_3	alternate_exon	13176884	13176897	+	asmbl_40430	none	blat.proc3825166.chain_164	1	STRG.3682.1	1
scaffold_12	alt_donor	12451819	12451820	+	asmbl_8007	none	STRG.15151.3	1	STRG.15151.2,blat.proc3825170.chain_3676,blat.proc3825170.chain_3677	3
scaffold_11	alt_acceptor	8790290	8790291	-	asmbl_6874	none	blat.proc3825170.chain_2482,blat.proc3825170.chain_2483	2	STRG.13904.1,STRG.13904.2,STRG.13904.3,blat.proc3825170.chain_2484	4
scaffold_8	spliced_intron	16505056	16505853	-	asmbl_52411,asmbl_52414,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52421	none	STRG.10629.1,STRG.10629.4,blat.proc3825152.chain_2929,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	7	STRG.10629.6,blat.proc3825152.chain_2931	2
scaffold_23	alternate_exon	5616090	5617750	-	asmbl_30925,asmbl_30930	none	STRG.25937.4,Trinity_GG_14487_c0_g2_i4,blat.proc3825160.chain_3057	3	Trinity_GG_14487_c0_g1_i1,blat.proc3825160.chain_3056	2
scaffold_4	spliced_intron	3237961	3238369	-	asmbl_42423	none	STRG.4249.2,blat.proc3825150.chain_493	2	STRG.4249.1,STRG.4249.3,Trinity_GG_2372_c0_g1_i5,blat.proc3825150.chain_494	4
scaffold_20	retained_intron	11285643	11285794	+	asmbl_27025,asmbl_27027	none	STRG.23634.1,STRG.23634.2,blat.proc3825176.chain_747	3	STRG.23634.3,Trinity_GG_30350_c0_g1_i2,blat.proc3825176.chain_746	3
scaffold_6	starts_in_intron	14723932	14723932	+	asmbl_47639	none	STRG.8239.1,blat.proc3825168.chain_684	2	blat.proc3825168.chain_683	1
scaffold_25	alt_acceptor	6083062	6083063	+	asmbl_33592	none	STRG.27488.1,Trinity_GG_32459_c0_g1_i1,blat.proc3825178.chain_595	3	STRG.27488.2	1
scaffold_7	alt_acceptor	15595242	15595243	+	asmbl_50446	none	STRG.9560.2,Trinity_GG_22613_c0_g1_i1,blat.proc3825168.chain_2062	3	STRG.9560.3	1
scaffold_27	starts_in_intron	973551	973551	+	asmbl_35971	none	Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1717	2	STRG.28595.1,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i3,Trinity_GG_33133_c0_g2_i1,blat.proc3825178.chain_1718,blat.proc3825178.chain_1720	6
scaffold_17	starts_in_intron	8224718	8224718	+	asmbl_18951	none	Trinity_GG_28483_c0_g1_i2,blat.proc3825174.chain_1247	2	STRG.20449.1,STRG.20449.3,Trinity_GG_28483_c0_g1_i3,blat.proc3825174.chain_1241,blat.proc3825174.chain_1242,blat.proc3825174.chain_1245,blat.proc3825174.chain_1248	7
scaffold_26	alternate_exon	3266000	3266496	+	asmbl_34769	none	STRG.28011.2,blat.proc3825178.chain_985,blat.proc3825178.chain_986	3	STRG.28011.3	1
scaffold_19	alt_donor	12958338	12958339	-	asmbl_22568	none	STRG.22612.1	1	Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3404	4
scaffold_25	spliced_intron	8726199	8726312	+	asmbl_33761	none	STRG.27700.1,blat.proc3825178.chain_773	2	blat.proc3825178.chain_772	1
scaffold_10	alt_acceptor	925748	925749	-	asmbl_4009	none	STRG.11968.1,Trinity_GG_6668_c0_g1_i2,blat.proc3825154.chain_538	3	STRG.11968.2	1
scaffold_18	retained_exon	3916064	3916386	-	asmbl_19785	none	STRG.21203.5	1	STRG.21203.3	1
scaffold_5	alternate_exon	5040828	5042890	+	asmbl_45329	none	STRG.5958.3	1	STRG.5958.1,STRG.5958.2,blat.proc3825166.chain_2121,blat.proc3825166.chain_2127,blat.proc3825166.chain_2128	5
scaffold_18	spliced_intron	616372	616548	+	asmbl_20307	none	STRG.21003.1,Trinity_GG_28867_c0_g1_i1,blat.proc3825174.chain_1942	3	Trinity_GG_28867_c0_g1_i2,blat.proc3825174.chain_1941	2
scaffold_1	spliced_intron	1432116	1432283	-	asmbl_70	none	Trinity_GG_1_c0_g1_i1,blat.proc3825148.chain_1	2	STRG.86.1,Trinity_GG_1_c0_g1_i2,blat.proc3825148.chain_2	3
scaffold_3	spliced_intron	14301647	14301823	-	asmbl_39346	none	STRG.3770.1,Trinity_GG_2050_c0_g1_i3,blat.proc3825148.chain_3622	3	STRG.3770.2,Trinity_GG_2050_c0_g1_i1,blat.proc3825148.chain_3621	3
scaffold_6	starts_in_intron	10381741	10381741	+	asmbl_47281	none	blat.proc3825168.chain_327	1	STRG.7877.1,blat.proc3825168.chain_328,blat.proc3825168.chain_329	3
scaffold_15	spliced_intron	2822581	2822636	-	asmbl_14053,asmbl_14054	none	STRG.18075.1,STRG.18075.2	2	Trinity_GG_10175_c0_g1_i1	1
scaffold_12	starts_in_intron	144921	144921	+	asmbl_7441	none	Trinity_GG_25272_c1_g1_i1,blat.proc3825170.chain_2979	2	STRG.14423.1,Trinity_GG_25272_c0_g1_i2,blat.proc3825170.chain_2978	3
scaffold_18	retained_exon	3917889	3918019	-	asmbl_19786	none	STRG.21203.3	1	STRG.21203.4	1
scaffold_4	spliced_intron	10872473	10872693	-	asmbl_42861,asmbl_42863	none	STRG.4808.1,blat.proc3825150.chain_988,blat.proc3825150.chain_989	3	blat.proc3825150.chain_986,blat.proc3825150.chain_987	2
scaffold_17	alt_acceptor	5138001	5138002	-	asmbl_17922	none	STRG.20247.1,blat.proc3825158.chain_1310	2	STRG.20247.2,STRG.20247.3,blat.proc3825158.chain_1307,blat.proc3825158.chain_1309	4
scaffold_20	alt_acceptor	2389441	2389442	-	asmbl_25643	none	STRG.22971.3	1	STRG.22971.2,blat.proc3825160.chain_61	2
scaffold_7	spliced_intron	3953206	3953955	-	asmbl_50829,asmbl_50830,asmbl_50831	none	STRG.8794.1,STRG.8794.2,Trinity_GG_4999_c0_g1_i6,blat.proc3825152.chain_1228,blat.proc3825152.chain_1232,blat.proc3825152.chain_1234	6	blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1229,blat.proc3825152.chain_1230,blat.proc3825152.chain_1231,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235,blat.proc3825152.chain_1236	8
scaffold_12	alternate_exon	12388034	12388295	+	asmbl_7997	none	STRG.15149.3	1	STRG.15149.1,STRG.15149.2,blat.proc3825170.chain_3636,blat.proc3825170.chain_3637	4
scaffold_14	retained_intron	11676922	11677256	-	asmbl_13519	none	STRG.17513.3,blat.proc3825156.chain_2348	2	STRG.17513.2,blat.proc3825156.chain_2347	2
scaffold_7	retained_intron	13953437	13953519	+	asmbl_50386,asmbl_50389	none	STRG.9492.2,Trinity_GG_22583_c0_g1_i3,Trinity_GG_22583_c0_g1_i5,blat.proc3825168.chain_2008,blat.proc3825168.chain_2009	5	STRG.9492.1,Trinity_GG_22583_c0_g1_i2,blat.proc3825168.chain_2010	3
scaffold_3	spliced_intron	7927018	7927366	+	asmbl_40185	none	STRG.3380.3	1	STRG.3380.2	1
scaffold_27	alt_acceptor	9431797	9431798	-	asmbl_37141	none	STRG.29189.2	1	STRG.29189.1,STRG.29189.3,blat.proc3825162.chain_2344,blat.proc3825162.chain_2345	4
scaffold_8	alt_acceptor	17362705	17362706	-	asmbl_52452	none	STRG.10659.2,blat.proc3825152.chain_2907	2	STRG.10659.1,blat.proc3825152.chain_2908	2
scaffold_5	retained_intron	10135753	10135836	+	asmbl_45659	none	blat.proc3825166.chain_2505	1	STRG.6311.1,blat.proc3825166.chain_2503,blat.proc3825166.chain_2504	3
scaffold_3	starts_in_intron	17114327	17114327	+	asmbl_40643	none	STRG.3952.3,Trinity_GG_19517_c5_g1_i1	2	STRG.3952.1,STRG.3952.2	2
scaffold_8	ends_in_intron	4852504	4852504	+	asmbl_52860	none	blat.proc3825168.chain_2526	1	STRG.9951.1,STRG.9951.2,blat.proc3825168.chain_2523,blat.proc3825168.chain_2524,blat.proc3825168.chain_2528	5
scaffold_322	spliced_intron	6549	6737	-	asmbl_40973	none	STRG.30281.1	1	Trinity_GG_16990_c0_g1_i5,blat.proc3825162.chain_3412	2
scaffold_3	starts_in_intron	8994554	8994554	-	asmbl_39048	none	blat.proc3825148.chain_3316	1	STRG.3431.1,STRG.3431.2,blat.proc3825148.chain_3317,blat.proc3825148.chain_3318,blat.proc3825148.chain_3319,blat.proc3825148.chain_3320	6
scaffold_17	ends_in_intron	14080268	14080268	+	asmbl_19386	none	blat.proc3825174.chain_1792	1	STRG.20887.1,blat.proc3825174.chain_1791	2
scaffold_8	alt_acceptor	11303874	11303875	+	asmbl_53222	none	STRG.10340.2,blat.proc3825168.chain_2888	2	STRG.10340.1,blat.proc3825168.chain_2889	2
scaffold_16	starts_in_intron	11688487	11688487	-	asmbl_17356	none	blat.proc3825158.chain_722	1	STRG.19693.1,blat.proc3825158.chain_720	2
scaffold_2	alternate_exon	7783101	7784952	+	asmbl_24575	none	STRG.2075.5	1	STRG.2075.1,blat.proc3825164.chain_2228,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	4
scaffold_7	spliced_intron	13173894	13174034	-	asmbl_51292,asmbl_51293	none	STRG.9426.1,blat.proc3825152.chain_1759	2	Trinity_GG_5287_c0_g1_i1,blat.proc3825152.chain_1758	2
scaffold_4	spliced_intron	5228399	5231130	-	asmbl_42574,asmbl_42577	none	STRG.4416.2,STRG.4416.4,blat.proc3825150.chain_648	3	STRG.4416.1,Trinity_GG_2471_c0_g1_i5,blat.proc3825150.chain_651	3
scaffold_7	spliced_intron	4936495	4936637	+	asmbl_49766,asmbl_49767,asmbl_49772,asmbl_49773,asmbl_49774,asmbl_49775,asmbl_49777,asmbl_49778	none	STRG.8852.1,STRG.8852.2,STRG.8852.3,STRG.8852.4,STRG.8852.5,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1350	11	blat.proc3825168.chain_1352	1
scaffold_6	alt_acceptor	10365796	10365797	-	asmbl_48687	none	STRG.7872.2	1	STRG.7872.1,blat.proc3825152.chain_247	2
scaffold_1	retained_intron	4927829	4928203	-	asmbl_229	none	Trinity_GG_156_c0_g1_i2	1	STRG.307.1,Trinity_GG_156_c0_g1_i1	2
scaffold_7	alternate_exon	4048172	4048275	-	asmbl_50847	none	STRG.8803.2	1	STRG.8803.1,STRG.8803.3,blat.proc3825152.chain_1276	3
scaffold_7	alternate_exon	15315769	15319694	-	asmbl_51368,asmbl_51370	none	STRG.9548.2,STRG.9548.3,Trinity_GG_5358_c0_g1_i1,blat.proc3825152.chain_1893,blat.proc3825152.chain_1895	5	STRG.9548.1,Trinity_GG_5358_c0_g2_i1,blat.proc3825152.chain_1894	3
scaffold_7	retained_exon	8296155	8296257	-	asmbl_50995,asmbl_50996	none	STRG.9066.1,STRG.9066.2,blat.proc3825152.chain_1452,blat.proc3825152.chain_1457	4	STRG.9066.4,blat.proc3825152.chain_1454	2
scaffold_15	alt_acceptor	4520329	4520330	-	asmbl_14148	none	STRG.18183.2	1	STRG.18183.1	1
scaffold_6	alt_acceptor	15945058	15945059	+	asmbl_47680,asmbl_47682	none	STRG.8324.3,STRG.8324.4	2	STRG.8324.2	1
scaffold_17	spliced_intron	7049932	7050209	+	asmbl_18889,asmbl_18890	none	STRG.20370.1,STRG.20370.3,blat.proc3825174.chain_1223,blat.proc3825174.chain_1225,blat.proc3825174.chain_1226,blat.proc3825174.chain_1227	6	STRG.20370.2,blat.proc3825174.chain_1224	2
scaffold_13	ends_in_intron	6434654	6434654	-	asmbl_9789	none	Trinity_GG_8977_c0_g1_i4,blat.proc3825156.chain_848	2	STRG.15943.1,blat.proc3825156.chain_846,blat.proc3825156.chain_847	3
scaffold_12	skipped_exon	14107246	14107823	-	asmbl_8978,asmbl_8979,asmbl_8980,asmbl_8981	none	Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i4,Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_87,blat.proc3825156.chain_93,blat.proc3825156.chain_95,blat.proc3825156.chain_97	8	STRG.15241.1,blat.proc3825156.chain_88,blat.proc3825156.chain_91,blat.proc3825156.chain_92,blat.proc3825156.chain_94,blat.proc3825156.chain_96	6
scaffold_6	retained_intron	13573595	13573738	-	asmbl_48913	none	STRG.8098.1,Trinity_GG_4614_c2_g1_i2,blat.proc3825152.chain_536	3	STRG.8098.2,STRG.8098.3,STRG.8098.4,Trinity_GG_4614_c2_g1_i1,Trinity_GG_4614_c2_g1_i3,blat.proc3825152.chain_537,blat.proc3825152.chain_538	7
scaffold_10	alternate_exon	16531312	16531387	+	asmbl_3721,asmbl_3722	none	STRG.13128.2,blat.proc3825170.chain_1654	2	STRG.13128.1,blat.proc3825170.chain_1651,blat.proc3825170.chain_1652,blat.proc3825170.chain_1653	4
scaffold_4	alt_donor	2202839	2202840	-	asmbl_42394	none	STRG.4219.2,blat.proc3825150.chain_440	2	STRG.4219.1,blat.proc3825150.chain_441	2
scaffold_25	ends_in_intron	5812680	5812680	-	asmbl_34283	none	Trinity_GG_15407_c1_g1_i1,blat.proc3825162.chain_842	2	STRG.27473.1,blat.proc3825162.chain_839,blat.proc3825162.chain_840,blat.proc3825162.chain_841	4
scaffold_14	ends_in_intron	1481054	1481054	-	asmbl_12889	none	Trinity_GG_9370_c2_g1_i1,blat.proc3825156.chain_1562	2	STRG.16795.1,blat.proc3825156.chain_1560	2
scaffold_12	alt_acceptor	5509947	5509948	+	asmbl_7661,asmbl_7662	none	STRG.14707.2,STRG.14707.3	2	STRG.14707.1,blat.proc3825170.chain_3234,blat.proc3825170.chain_3235	3
scaffold_14	alternate_exon	8217585	8217649	-	asmbl_13259	none	STRG.17234.4	1	STRG.17234.1,STRG.17234.2,STRG.17234.3,STRG.17234.5,blat.proc3825156.chain_2055,blat.proc3825156.chain_2056,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059,blat.proc3825156.chain_2060	9
scaffold_8	retained_intron	6307610	6307748	+	asmbl_52963	none	blat.proc3825168.chain_2629	1	STRG.10033.1,blat.proc3825168.chain_2625,blat.proc3825168.chain_2626	3
scaffold_16	spliced_intron	7910628	7911984	+	asmbl_16360	none	STRG.19445.1,Trinity_GG_27913_c0_g1_i1,blat.proc3825174.chain_282	3	blat.proc3825174.chain_283	1
scaffold_4	starts_in_intron	17129377	17129377	-	asmbl_43259	none	Trinity_GG_2969_c0_g1_i1,blat.proc3825150.chain_1490	2	STRG.5313.2,blat.proc3825150.chain_1491	2
scaffold_7	retained_exon	17339668	17339702	-	asmbl_51424	none	STRG.9613.4	1	STRG.9613.1,STRG.9613.2,STRG.9613.3	3
scaffold_7	alternate_exon	2582710	2582744	+	asmbl_49656	none	STRG.8699.2,Trinity_GG_22094_c0_g1_i1,blat.proc3825168.chain_1182	3	STRG.8699.1	1
scaffold_15	retained_exon	4566580	4566617	+	asmbl_15161	none	Trinity_GG_27289_c0_g1_i4,blat.proc3825172.chain_2866	2	STRG.18186.1,Trinity_GG_27289_c0_g1_i1,Trinity_GG_27289_c0_g1_i3,blat.proc3825172.chain_2867,blat.proc3825172.chain_2869	5
scaffold_15	alt_acceptor	15857504	15857505	+	asmbl_15819,asmbl_15825,asmbl_15828	none	STRG.18973.1,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i5,blat.proc3825172.chain_3568,blat.proc3825172.chain_3576,blat.proc3825172.chain_3577	6	STRG.18973.2,STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3572,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575	10
scaffold_15	spliced_intron	4817650	4817737	-	asmbl_14163	none	STRG.18206.1,blat.proc3825156.chain_2945	2	blat.proc3825156.chain_2948	1
scaffold_8	starts_in_intron	6036790	6036790	+	asmbl_52934	none	Trinity_GG_22892_c0_g1_i3,blat.proc3825168.chain_2587	2	STRG.10010.1,Trinity_GG_22892_c0_g1_i1,Trinity_GG_22892_c0_g1_i4,blat.proc3825168.chain_2584,blat.proc3825168.chain_2585,blat.proc3825168.chain_2586	6
scaffold_1	retained_intron	43037	43442	-	asmbl_1	none	STRG.11.2,Trinity_GG_34_c0_g2_i1,blat.proc3825148.chain_65	3	STRG.11.1,STRG.11.3,blat.proc3825148.chain_63,blat.proc3825148.chain_64	4
scaffold_23	ends_in_intron	3510375	3510375	-	asmbl_30803	none	Trinity_GG_14435_c0_g1_i4,blat.proc3825160.chain_2974	2	STRG.25774.1,blat.proc3825160.chain_2975,blat.proc3825160.chain_2979	3
scaffold_2	starts_in_intron	1322240	1322240	+	asmbl_24185	none	Trinity_GG_18243_c0_g1_i1,blat.proc3825164.chain_1793	2	STRG.1595.4,STRG.1595.5	2
scaffold_6	spliced_intron	13000458	13000538	-	asmbl_48856,asmbl_48857,asmbl_48858,asmbl_48859,asmbl_48865,asmbl_48867,asmbl_48868	none	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,STRG.8068.5,STRG.8068.6,blat.proc3825152.chain_488,blat.proc3825152.chain_492,blat.proc3825152.chain_495	9	blat.proc3825152.chain_491,blat.proc3825152.chain_493,blat.proc3825152.chain_496	3
scaffold_15	spliced_intron	6793556	6793655	-	asmbl_14258	none	STRG.18295.2,blat.proc3825156.chain_3137	2	STRG.18295.1,blat.proc3825156.chain_3138	2
scaffold_2	retained_exon	11603471	11603482	+	asmbl_24759,asmbl_24763	none	blat.proc3825164.chain_2376,blat.proc3825164.chain_2380,blat.proc3825164.chain_2381	3	STRG.2268.1,STRG.2268.2,STRG.2268.3,blat.proc3825164.chain_2377,blat.proc3825164.chain_2378,blat.proc3825164.chain_2379,blat.proc3825164.chain_2382	7
scaffold_14	alt_donor	12593720	12593721	+	asmbl_12433	none	STRG.17580.1,blat.proc3825172.chain_2230,blat.proc3825172.chain_2231	3	STRG.17580.3	1
scaffold_11	alternate_exon	4335884	4335979	-	asmbl_6597,asmbl_6599	none	blat.proc3825154.chain_2136,blat.proc3825154.chain_2137	2	STRG.13525.2	1
scaffold_4	starts_in_intron	14657036	14657036	-	asmbl_43068	none	blat.proc3825150.chain_1201	1	STRG.5093.1,blat.proc3825150.chain_1200	2
scaffold_5	alt_donor	6323968	6323969	+	asmbl_45422	none	STRG.6044.1	1	STRG.6044.3	1
scaffold_23	alt_acceptor	9424800	9424801	+	asmbl_31794	none	STRG.26164.3,Trinity_GG_31776_c1_g1_i1,blat.proc3825176.chain_3143	3	STRG.26164.1,STRG.26164.2,blat.proc3825176.chain_3144	3
scaffold_6	alt_donor	12116976	12116977	+	asmbl_47376	none	Trinity_GG_21681_c0_g1_i3,blat.proc3825168.chain_428	2	STRG.7985.4,Trinity_GG_21681_c0_g1_i5,blat.proc3825168.chain_431	3
scaffold_10	skipped_exon	10641555	10642467	-	asmbl_4753	none	STRG.12763.2	1	STRG.12763.1	1
scaffold_2	alt_acceptor	17974189	17974190	+	asmbl_25208,asmbl_25211,asmbl_25212	none	STRG.2689.1,STRG.2689.2,blat.proc3825164.chain_2961,blat.proc3825164.chain_2964	4	blat.proc3825164.chain_2962	1
scaffold_9	alternate_exon	76390	76566	+	asmbl_53748	none	STRG.10767.1,Trinity_GG_23281_c0_g1_i1,blat.proc3825168.chain_3293	3	STRG.10767.2	1
scaffold_8	alt_donor	18434348	18434349	+	asmbl_53551	none	STRG.10742.1,blat.proc3825168.chain_3265	2	STRG.10742.2	1
scaffold_5	alt_acceptor	16350425	16350426	+	asmbl_46094	none	Trinity_GG_21009_c0_g1_i1,blat.proc3825166.chain_2957	2	STRG.6830.1	1
scaffold_8	retained_intron	3796351	3797087	+	asmbl_52803	none	STRG.9872.1,Trinity_GG_22818_c0_g1_i1,Trinity_GG_22818_c0_g2_i1,blat.proc3825168.chain_2446,blat.proc3825168.chain_2447	5	STRG.9872.2	1
scaffold_28	starts_in_intron	3848680	3848680	-	asmbl_38179	none	blat.proc3825162.chain_2727	1	STRG.29584.1	1
scaffold_18	retained_intron	824174	824807	+	asmbl_20326,asmbl_20330	none	STRG.21008.2,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	3	STRG.21008.1,STRG.21008.3,blat.proc3825174.chain_1872	3
scaffold_5	alternate_exon	7979716	7980265	-	asmbl_44193	none	STRG.6171.1,blat.proc3825150.chain_2284	2	STRG.6171.2	1
scaffold_8	spliced_intron	4899967	4900064	+	asmbl_52873,asmbl_52874,asmbl_52879	none	STRG.9956.1,STRG.9956.2,blat.proc3825168.chain_2417,blat.proc3825168.chain_2418	4	blat.proc3825168.chain_2416	1
scaffold_19	ends_in_intron	8329511	8329511	+	asmbl_21511	none	blat.proc3825174.chain_3267	1	STRG.22290.1,blat.proc3825174.chain_3268	2
scaffold_11	alternate_exon	4751421	4751642	+	asmbl_5515	none	STRG.13573.1,blat.proc3825170.chain_2102	2	blat.proc3825170.chain_2101	1
scaffold_6	spliced_intron	4962197	4962323	-	asmbl_48372,asmbl_48374	none	blat.proc3825150.chain_3661,blat.proc3825150.chain_3662	2	blat.proc3825150.chain_3663	1
scaffold_6	alt_donor	18258131	18258132	-	asmbl_49236	none	STRG.8505.3	1	STRG.8505.1,STRG.8505.2	2
scaffold_18	ends_in_intron	13653488	13653488	-	asmbl_20182	none	blat.proc3825158.chain_2602	1	STRG.21800.1,STRG.21800.2,blat.proc3825158.chain_2603	3
scaffold_8	alt_donor	18251416	18251417	-	asmbl_52524,asmbl_52525,asmbl_52526,asmbl_52527,asmbl_52529,asmbl_52530,asmbl_52531	none	STRG.10728.1,STRG.10728.2,STRG.10728.3,STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3015,blat.proc3825152.chain_3016,blat.proc3825152.chain_3017,blat.proc3825152.chain_3018,blat.proc3825152.chain_3019	12	Trinity_GG_5973_c0_g1_i7,blat.proc3825152.chain_3014	2
scaffold_6	alt_donor	5195631	5195632	+	asmbl_46916,asmbl_46917,asmbl_46920,asmbl_46921,asmbl_46926	none	STRG.7496.1,STRG.7496.2,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3554	8	Trinity_GG_21344_c0_g1_i16,Trinity_GG_21344_c0_g1_i2,blat.proc3825166.chain_3553,blat.proc3825166.chain_3556	4
scaffold_10	alt_donor	190593	190594	-	asmbl_3915	none	STRG.11907.2,blat.proc3825154.chain_419	2	STRG.11907.1,blat.proc3825154.chain_420	2
scaffold_2	retained_exon	7782119	7782194	+	asmbl_24570,asmbl_24571,asmbl_24572,asmbl_24573	none	STRG.2075.1,STRG.2075.2,STRG.2075.3,STRG.2075.4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2229,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	8	STRG.2075.5	1
scaffold_18	alt_donor	13150229	13150230	-	asmbl_20168	none	STRG.21756.1	1	STRG.21756.3	1
scaffold_1	retained_intron	20741340	20741546	-	asmbl_1201	none	blat.proc3825148.chain_1415	1	STRG.1420.1,blat.proc3825148.chain_1416	2
scaffold_12	alternate_exon	12441162	12441209	+	asmbl_8004,asmbl_8007	none	STRG.15151.2,STRG.15151.3,blat.proc3825170.chain_3676,blat.proc3825170.chain_3677	4	STRG.15151.1	1
scaffold_14	ends_in_intron	3243557	3243557	+	asmbl_11934	none	blat.proc3825172.chain_1618	1	STRG.16923.1,STRG.16923.2,blat.proc3825172.chain_1617,blat.proc3825172.chain_1621,blat.proc3825172.chain_1622	5
scaffold_11	skipped_exon	3024724	3026445	+	asmbl_5397	none	STRG.13434.3	1	STRG.13434.2,blat.proc3825170.chain_1880	2
scaffold_6	alternate_exon	5430341	5433751	+	asmbl_46946	none	STRG.7513.2	1	STRG.7513.3,Trinity_GG_21394_c0_g1_i4,blat.proc3825166.chain_3654	3
scaffold_1	starts_in_intron	6341966	6341966	+	asmbl_1833	none	STRG.435.2	1	STRG.435.1,blat.proc3825164.chain_583	2
scaffold_20	spliced_intron	1624100	1624144	-	asmbl_25595	none	STRG.22899.3	1	blat.proc3825160.chain_10	1
scaffold_2	alt_donor	1318012	1318013	+	asmbl_24182,asmbl_24183,asmbl_24184	none	STRG.1595.1,blat.proc3825164.chain_1794,blat.proc3825164.chain_1795	3	STRG.1595.2	1
scaffold_23	starts_in_intron	8813283	8813283	+	asmbl_31783	none	Trinity_GG_31765_c0_g1_i4,blat.proc3825176.chain_3120	2	STRG.26148.1,STRG.26148.2,STRG.26148.3,blat.proc3825176.chain_3119,blat.proc3825176.chain_3122,blat.proc3825176.chain_3123	6
scaffold_20	alt_donor	11573193	11573194	-	asmbl_26158,asmbl_26160,asmbl_26161	none	STRG.23664.2,STRG.23664.3,STRG.23664.4,blat.proc3825160.chain_731	4	STRG.23664.1,blat.proc3825160.chain_730	2
scaffold_1	skipped_exon	6126767	6127234	-	asmbl_320	none	blat.proc3825148.chain_391	1	STRG.415.1,STRG.415.2,blat.proc3825148.chain_392	3
scaffold_6	retained_intron	9170836	9170927	+	asmbl_47226	none	Trinity_GG_21600_c0_g1_i2,blat.proc3825168.chain_266	2	STRG.7793.1,Trinity_GG_21600_c0_g1_i1,blat.proc3825168.chain_265	3
scaffold_20	starts_in_intron	11545753	11545753	-	asmbl_26157	none	blat.proc3825160.chain_736	1	STRG.23661.1,blat.proc3825160.chain_737	2
scaffold_14	alt_acceptor	11246784	11246785	-	asmbl_13462,asmbl_13465	none	STRG.17460.3,blat.proc3825156.chain_2267	2	STRG.17460.1,STRG.17460.4,blat.proc3825156.chain_2266	3
scaffold_14	alt_acceptor	917460	917461	+	asmbl_11781,asmbl_11782	none	STRG.16761.2,STRG.16761.3	2	STRG.16761.1,blat.proc3825172.chain_1522	2
scaffold_22	skipped_exon	8236659	8237400	-	asmbl_29468	none	STRG.25182.3	1	STRG.25182.1,STRG.25182.2,blat.proc3825160.chain_2327,blat.proc3825160.chain_2328	4
scaffold_14	retained_exon	3160026	3160064	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11922	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	14	blat.proc3825172.chain_1609	1
scaffold_19	ends_in_intron	10227754	10227754	+	asmbl_21633	none	blat.proc3825174.chain_3305	1	STRG.22403.1,blat.proc3825174.chain_3303	2
scaffold_8	ends_in_intron	7728312	7728312	+	asmbl_52993	none	STRG.10085.2	1	STRG.10085.1,blat.proc3825168.chain_2654	2
scaffold_10	alt_acceptor	13046471	13046472	-	asmbl_4852,asmbl_4854	none	STRG.12914.1,blat.proc3825154.chain_1518	2	STRG.12914.2,blat.proc3825154.chain_1517	2
scaffold_13	alt_donor	3996835	3996836	-	asmbl_9600,asmbl_9601	none	STRG.15726.1,blat.proc3825156.chain_606,blat.proc3825156.chain_607	3	blat.proc3825156.chain_608	1
scaffold_13	alt_donor	9242950	9242951	+	asmbl_11184	none	STRG.16188.1,blat.proc3825172.chain_883	2	STRG.16188.2,blat.proc3825172.chain_884	2
scaffold_13	alt_acceptor	4016234	4016235	+	asmbl_10753	none	blat.proc3825172.chain_461	1	blat.proc3825172.chain_462	1
scaffold_10	retained_intron	13279609	13280597	+	asmbl_3589	none	Trinity_GG_24437_c0_g1_i2,blat.proc3825170.chain_1537	2	Trinity_GG_24437_c0_g1_i1,blat.proc3825170.chain_1536	2
scaffold_17	spliced_intron	7965060	7965092	-	asmbl_18068	none	STRG.20416.3	1	STRG.20416.1,STRG.20416.2,blat.proc3825158.chain_1467	3
scaffold_5	spliced_intron	18264036	18264289	+	asmbl_46235,asmbl_46236,asmbl_46238,asmbl_46240	none	STRG.6968.1,STRG.6968.2,blat.proc3825166.chain_3184,blat.proc3825166.chain_3188,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	6	STRG.6968.5,blat.proc3825166.chain_3187	2
scaffold_1	retained_exon	12463815	12464403	-	asmbl_720	none	STRG.867.1	1	STRG.867.3,STRG.867.5	2
scaffold_6	retained_exon	13060355	13060448	-	asmbl_48873	none	STRG.8063.4	1	STRG.8063.3	1
scaffold_14	alt_acceptor	202514	202515	-	asmbl_12795,asmbl_12796,asmbl_12804	none	STRG.16713.1,STRG.16713.2,blat.proc3825156.chain_1540,blat.proc3825156.chain_1541	4	STRG.16713.4,blat.proc3825156.chain_1542	2
scaffold_8	alt_donor	6902999	6903000	+	asmbl_52968,asmbl_52970,asmbl_52972,asmbl_52973	none	STRG.10051.1,STRG.10051.2,STRG.10051.3,blat.proc3825168.chain_2534,blat.proc3825168.chain_2537	5	blat.proc3825168.chain_2536	1
scaffold_3	retained_intron	14048563	14048700	+	asmbl_40497	none	STRG.3748.2,blat.proc3825166.chain_244	2	STRG.3748.1	1
scaffold_12	starts_in_intron	13043076	13043076	-	asmbl_8909	none	blat.proc3825154.chain_3699	1	STRG.15192.1,blat.proc3825154.chain_3700	2
scaffold_11	retained_intron	1809111	1809270	-	asmbl_6447	none	STRG.13348.1	1	blat.proc3825154.chain_1926	1
scaffold_8	retained_intron	18089772	18090313	+	asmbl_53525	none	STRG.10711.1,blat.proc3825168.chain_3139	2	blat.proc3825168.chain_3141	1
scaffold_20	alt_donor	6950041	6950042	-	asmbl_25852,asmbl_25854,asmbl_25857,asmbl_25858	none	STRG.23269.3,STRG.23269.5,STRG.23269.6,blat.proc3825160.chain_305,blat.proc3825160.chain_306,blat.proc3825160.chain_308	6	STRG.23269.2,blat.proc3825160.chain_307	2
scaffold_6	retained_intron	12415798	12415973	-	asmbl_48801,asmbl_48802,asmbl_48803,asmbl_48804	none	STRG.7996.1,STRG.7996.2,STRG.7996.3,STRG.7996.5,blat.proc3825152.chain_392,blat.proc3825152.chain_393,blat.proc3825152.chain_394	7	STRG.7996.4	1
scaffold_20	skipped_exon	650710	652095	-	asmbl_25507	none	STRG.22768.2	1	STRG.22768.1,blat.proc3825158.chain_3613	2
scaffold_1	skipped_exon	10690372	10690977	-	asmbl_595	none	STRG.698.2,blat.proc3825148.chain_706	2	STRG.698.1,blat.proc3825148.chain_705	2
scaffold_52	skipped_exon	1519	1786	-	asmbl_46525	none	STRG.30060.3	1	STRG.30060.1,STRG.30060.2,blat.proc3825162.chain_3235,blat.proc3825162.chain_3236	4
scaffold_20	starts_in_intron	1951333	1951333	-	asmbl_25623	none	Trinity_GG_12798_c0_g1_i1	1	STRG.22935.1	1
scaffold_2	alt_acceptor	7881678	7881679	+	asmbl_24588	none	Trinity_GG_18501_c0_g1_i2,blat.proc3825164.chain_2290	2	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i20,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291,blat.proc3825164.chain_2292,blat.proc3825164.chain_2293	9
scaffold_20	starts_in_intron	12070186	12070186	-	asmbl_26213	none	Trinity_GG_13165_c0_g1_i3,blat.proc3825160.chain_710	2	STRG.23701.1,Trinity_GG_13165_c0_g1_i2,blat.proc3825160.chain_709	3
scaffold_16	retained_intron	6195012	6195163	+	asmbl_16295,asmbl_16297	none	blat.proc3825174.chain_257,blat.proc3825174.chain_259	2	STRG.19370.1,STRG.19370.2,blat.proc3825174.chain_258,blat.proc3825174.chain_260,blat.proc3825174.chain_261	5
scaffold_21	starts_in_intron	5520366	5520366	-	asmbl_27666	none	blat.proc3825160.chain_1267	1	STRG.24083.3,blat.proc3825160.chain_1261	2
scaffold_15	alternate_exon	11400341	11400430	-	asmbl_14497,asmbl_14498	none	STRG.18606.4,STRG.18606.6	2	STRG.18606.1,STRG.18606.2,STRG.18606.3,STRG.18606.5,blat.proc3825156.chain_3363,blat.proc3825156.chain_3364,blat.proc3825156.chain_3365,blat.proc3825156.chain_3366	8
scaffold_10	retained_intron	6867580	6867771	-	asmbl_4508	none	blat.proc3825154.chain_1139	1	blat.proc3825154.chain_1143,blat.proc3825154.chain_1145	2
scaffold_23	spliced_intron	5709650	5709748	-	asmbl_30938	none	STRG.25941.1	1	Trinity_GG_14531_c0_g1_i2,blat.proc3825160.chain_3132	2
scaffold_5	retained_exon	17225624	17225757	+	asmbl_46147	none	STRG.6896.1,blat.proc3825166.chain_3076	2	blat.proc3825166.chain_3077	1
scaffold_6	retained_exon	18051135	18051319	-	asmbl_49223,asmbl_49224,asmbl_49225	none	STRG.8487.1,STRG.8487.2,STRG.8487.3,blat.proc3825152.chain_918,blat.proc3825152.chain_919,blat.proc3825152.chain_920	6	STRG.8487.4	1
scaffold_4	spliced_intron	17472694	17472804	-	asmbl_43271	none	Trinity_GG_2943_c0_g1_i2,blat.proc3825150.chain_1440	2	STRG.5334.1,Trinity_GG_2943_c0_g1_i1,blat.proc3825150.chain_1441	3
scaffold_6	starts_in_intron	1489361	1489361	+	asmbl_46706	none	blat.proc3825166.chain_3414	1	blat.proc3825166.chain_3413,blat.proc3825166.chain_3415	2
scaffold_25	alternate_exon	9445695	9445800	+	asmbl_33817,asmbl_33819	none	STRG.27758.1,blat.proc3825178.chain_801,blat.proc3825178.chain_804	3	STRG.27758.2,blat.proc3825178.chain_802	2
scaffold_25	retained_intron	3631412	3631606	+	asmbl_33440	none	blat.proc3825178.chain_432	1	STRG.27312.1,STRG.27312.2,blat.proc3825178.chain_426,blat.proc3825178.chain_427,blat.proc3825178.chain_429	5
scaffold_21	retained_intron	255543	255961	-	asmbl_27290,asmbl_27292,asmbl_27293	none	blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	3	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.4,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806,blat.proc3825160.chain_809,blat.proc3825160.chain_811,blat.proc3825160.chain_812	13
scaffold_16	starts_in_intron	3742046	3742046	-	asmbl_16997	none	blat.proc3825158.chain_327	1	STRG.19180.1,STRG.19180.2,blat.proc3825158.chain_326	3
scaffold_26	retained_exon	2962932	2962975	-	asmbl_35458,asmbl_35459,asmbl_35460	none	STRG.27989.1,STRG.27989.3,STRG.27989.4,blat.proc3825162.chain_1299,blat.proc3825162.chain_1301,blat.proc3825162.chain_1303	6	STRG.27989.2,blat.proc3825162.chain_1300	2
scaffold_15	starts_in_intron	5739351	5739351	-	asmbl_14234	none	blat.proc3825156.chain_3116	1	STRG.18261.1,STRG.18261.2,STRG.18261.3,STRG.18261.4	4
scaffold_7	retained_intron	8279661	8279764	+	asmbl_49983	none	blat.proc3825168.chain_1492	1	STRG.9062.1,blat.proc3825168.chain_1489,blat.proc3825168.chain_1490	3
scaffold_3	retained_intron	19882464	19882567	-	asmbl_39675	none	STRG.4100.2,blat.proc3825150.chain_241	2	STRG.4100.5	1
scaffold_11	alternate_exon	4723618	4723780	+	asmbl_5504	none	STRG.13558.2	1	STRG.13558.1	1
scaffold_15	retained_intron	7254010	7254095	-	asmbl_14288	none	Trinity_GG_10241_c0_g1_i2	1	STRG.18323.1,blat.proc3825156.chain_3049	2
scaffold_13	retained_intron	394206	395582	-	asmbl_9343,asmbl_9346,asmbl_9348	none	Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_353,blat.proc3825156.chain_359,blat.proc3825156.chain_366	6	STRG.15444.2,STRG.15444.4,STRG.15444.5,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i5,blat.proc3825156.chain_351,blat.proc3825156.chain_354,blat.proc3825156.chain_360,blat.proc3825156.chain_362	11
scaffold_12	retained_exon	3216288	3216509	-	asmbl_8350	none	STRG.14553.2,blat.proc3825154.chain_3043	2	STRG.14553.1,blat.proc3825154.chain_3041	2
scaffold_5	alternate_exon	18262627	18263021	+	asmbl_46241	none	STRG.6968.4	1	STRG.6968.1,blat.proc3825166.chain_3184,blat.proc3825166.chain_3187,blat.proc3825166.chain_3190	4
scaffold_11	retained_intron	8399407	8399497	+	asmbl_5766,asmbl_5767,asmbl_5768	none	blat.proc3825170.chain_2392,blat.proc3825170.chain_2393,blat.proc3825170.chain_2396	3	STRG.13857.1,STRG.13857.2,STRG.13857.3,Trinity_GG_24940_c0_g1_i11,blat.proc3825170.chain_2390,blat.proc3825170.chain_2391,blat.proc3825170.chain_2394,blat.proc3825170.chain_2395,blat.proc3825170.chain_2397	9
scaffold_9	retained_intron	16654233	16654417	-	asmbl_55602	none	Trinity_GG_6525_c0_g1_i4,blat.proc3825154.chain_283	2	STRG.11813.1,blat.proc3825154.chain_279,blat.proc3825154.chain_280,blat.proc3825154.chain_281,blat.proc3825154.chain_282	5
scaffold_15	alternate_exon	6883099	6884395	-	asmbl_14259	none	STRG.18301.6,Trinity_GG_10293_c1_g1_i1,blat.proc3825156.chain_3160	3	STRG.18301.1,STRG.18301.3,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153	7
scaffold_25	retained_exon	8668702	8668797	+	asmbl_33741	none	STRG.27689.3,blat.proc3825178.chain_783	2	STRG.27689.1,blat.proc3825178.chain_785	2
scaffold_17	retained_exon	2355867	2356400	+	asmbl_18638,asmbl_18641,asmbl_18642	none	STRG.20030.4,STRG.20030.5,STRG.20030.6	3	STRG.20030.1,blat.proc3825174.chain_907,blat.proc3825174.chain_909	3
scaffold_9	alt_acceptor	8181503	8181504	+	asmbl_54156	none	STRG.11248.2,Trinity_GG_23577_c0_g1_i1,blat.proc3825170.chain_17,blat.proc3825170.chain_18	4	STRG.11248.1,STRG.11248.3,blat.proc3825170.chain_19	3
scaffold_18	retained_intron	1382455	1382684	-	asmbl_19614	none	STRG.21024.2,blat.proc3825158.chain_1982	2	STRG.21024.1,blat.proc3825158.chain_1981	2
scaffold_11	spliced_intron	14794936	14794956	+	asmbl_6102	none	STRG.14260.1	1	Trinity_GG_25165_c0_g1_i2	1
scaffold_1	alternate_exon	8632804	8633664	-	asmbl_464	none	blat.proc3825148.chain_548	1	STRG.571.1,blat.proc3825148.chain_545	2
scaffold_8	spliced_intron	1801739	1801810	-	asmbl_51705	none	STRG.9780.2	1	blat.proc3825168.chain_2303	1
scaffold_19	spliced_intron	11470827	11471462	-	asmbl_22395	none	STRG.22481.4,blat.proc3825158.chain_3257	2	STRG.22481.1,STRG.22481.2,blat.proc3825158.chain_3256,blat.proc3825158.chain_3258	4
scaffold_3	spliced_intron	7917839	7917880	-	asmbl_38997	none	STRG.3377.2	1	blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	2
scaffold_5	retained_intron	15044032	15044118	-	asmbl_44635	none	Trinity_GG_3732_c0_g1_i1,blat.proc3825150.chain_2826	2	STRG.6698.2,STRG.6698.3,STRG.6698.4	3
scaffold_18	starts_in_intron	11472356	11472356	+	asmbl_20944	none	STRG.21681.2	1	STRG.21681.1,blat.proc3825174.chain_2702	2
scaffold_8	alt_acceptor	18460455	18460456	-	asmbl_52546	none	STRG.10744.2	1	STRG.10744.1,blat.proc3825152.chain_3025,blat.proc3825152.chain_3026	3
scaffold_9	spliced_intron	9853052	9854248	+	asmbl_54265	none	STRG.11357.2	1	blat.proc3825170.chain_206	1
scaffold_26	ends_in_intron	5040141	5040141	+	asmbl_34941,asmbl_34944,asmbl_34945	none	blat.proc3825178.chain_1177,blat.proc3825178.chain_1178,blat.proc3825178.chain_1182	3	STRG.28240.1,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180	8
scaffold_16	retained_exon	432654	432695	-	asmbl_16869,asmbl_16870,asmbl_16871,asmbl_16873,asmbl_16874,asmbl_16875,asmbl_16876,asmbl_16877,asmbl_16879,asmbl_16880	none	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_196,blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_200,blat.proc3825158.chain_201,blat.proc3825158.chain_202,blat.proc3825158.chain_203,blat.proc3825158.chain_204	10	blat.proc3825158.chain_197	1
scaffold_1	skipped_exon	22371748	22373576	+	asmbl_2689	none	STRG.1491.1	1	STRG.1491.2,STRG.1491.3,STRG.1491.4,STRG.1491.5	4
scaffold_26	starts_in_intron	4136644	4136644	-	asmbl_35533,asmbl_35534	none	STRG.28116.1,STRG.28116.2	2	STRG.28116.3,STRG.28116.4,blat.proc3825162.chain_1396,blat.proc3825162.chain_1397	4
scaffold_16	alt_donor	7587394	7587395	-	asmbl_17184	none	STRG.19414.2,Trinity_GG_10891_c0_g1_i1,blat.proc3825158.chain_542	3	STRG.19414.1,Trinity_GG_10891_c0_g1_i2,blat.proc3825158.chain_541	3
scaffold_5	spliced_intron	11991739	11992075	-	asmbl_44427,asmbl_44433	none	STRG.6453.4,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	3	STRG.6453.2,STRG.6453.5,blat.proc3825150.chain_2615	3
scaffold_14	retained_intron	2898639	2898894	+	asmbl_11894	none	Trinity_GG_26600_c0_g1_i3,blat.proc3825172.chain_1666	2	STRG.16891.1,Trinity_GG_26600_c0_g1_i1,blat.proc3825172.chain_1665	3
scaffold_3	starts_in_intron	14481035	14481035	+	asmbl_40530	none	Trinity_GG_19439_c0_g1_i2,blat.proc3825166.chain_288	2	STRG.3789.1,STRG.3789.2,Trinity_GG_19439_c0_g1_i1,blat.proc3825166.chain_286,blat.proc3825166.chain_287	5
scaffold_6	starts_in_intron	12653794	12653794	+	asmbl_47430,asmbl_47431	none	STRG.8027.2,Trinity_GG_21691_c1_g1_i4,blat.proc3825168.chain_447	3	STRG.8027.1,blat.proc3825168.chain_448,blat.proc3825168.chain_449	3
scaffold_2	starts_in_intron	32822	32822	+	asmbl_24066,asmbl_24067	none	STRG.1496.4,STRG.1496.5	2	STRG.1496.1,STRG.1496.3,blat.proc3825164.chain_1639,blat.proc3825164.chain_1645	4
scaffold_13	retained_intron	1013360	1013456	+	asmbl_10519	none	STRG.15472.1,Trinity_GG_25809_c0_g1_i1,blat.proc3825172.chain_178	3	STRG.15472.2	1
scaffold_6	retained_intron	14379745	14379856	+	asmbl_47600	none	STRG.8196.1,Trinity_GG_21822_c0_g1_i2,blat.proc3825168.chain_689	3	blat.proc3825168.chain_690	1
scaffold_13	starts_in_intron	1532231	1532231	+	asmbl_10567	none	Trinity_GG_25847_c0_g1_i1,blat.proc3825172.chain_274	2	STRG.15517.1,Trinity_GG_25847_c0_g1_i2,Trinity_GG_25847_c0_g1_i3,blat.proc3825172.chain_275,blat.proc3825172.chain_276	5
scaffold_27	retained_intron	2436344	2436418	+	asmbl_36086	none	blat.proc3825178.chain_1891	1	STRG.28717.2	1
scaffold_28	starts_in_intron	552621	552621	+	asmbl_37288,asmbl_37289	none	Trinity_GG_33533_c0_g1_i3,Trinity_GG_33533_c0_g1_i4,blat.proc3825178.chain_2464,blat.proc3825178.chain_2465	4	STRG.29275.1,Trinity_GG_33533_c0_g1_i2,blat.proc3825178.chain_2463	3
scaffold_4	spliced_intron	13365831	13366046	-	asmbl_42991	none	STRG.4965.2,blat.proc3825150.chain_1103	2	STRG.4965.1,Trinity_GG_2736_c0_g1_i2,blat.proc3825150.chain_1102	3
scaffold_10	spliced_intron	5010430	5010561	-	asmbl_4335	none	blat.proc3825154.chain_848	1	STRG.12326.1,blat.proc3825154.chain_850	2
scaffold_2	retained_intron	16087681	16088030	-	asmbl_23666	none	Trinity_GG_1349_c2_g1_i1,blat.proc3825148.chain_2440	2	STRG.2559.1,blat.proc3825148.chain_2434,blat.proc3825148.chain_2435,blat.proc3825148.chain_2436,blat.proc3825148.chain_2437,blat.proc3825148.chain_2438	6
scaffold_11	retained_intron	11941632	11941758	-	asmbl_7043	none	STRG.14177.3	1	STRG.14177.4	1
scaffold_12	skipped_exon	9687346	9690020	-	asmbl_8689,asmbl_8694	none	STRG.14946.2,STRG.14946.4,Trinity_GG_8342_c0_g1_i3,blat.proc3825154.chain_3465	4	STRG.14946.1,STRG.14946.3,blat.proc3825154.chain_3467	3
scaffold_18	ends_in_intron	3838257	3838257	+	asmbl_20483	none	blat.proc3825174.chain_2132	1	STRG.21195.1,blat.proc3825174.chain_2133	2
scaffold_2	alt_acceptor	11610203	11610204	+	asmbl_24762,asmbl_24763,asmbl_24764	none	STRG.2268.2,blat.proc3825164.chain_2378,blat.proc3825164.chain_2380	3	STRG.2268.3,blat.proc3825164.chain_2377	2
scaffold_19	alternate_exon	4865464	4865507	+	asmbl_21343	none	STRG.22065.3,blat.proc3825174.chain_3068	2	STRG.22065.1	1
scaffold_21	starts_in_intron	2475472	2475472	-	asmbl_27460	none	blat.proc3825160.chain_1044	1	STRG.23874.1,blat.proc3825160.chain_1043,blat.proc3825160.chain_1045,blat.proc3825160.chain_1047,blat.proc3825160.chain_1048	5
scaffold_5	ends_in_intron	15527615	15527615	-	asmbl_44691	none	Trinity_GG_3783_c0_g1_i1,blat.proc3825150.chain_2924	2	STRG.6742.1,blat.proc3825150.chain_2923	2
scaffold_14	alt_acceptor	4154677	4154678	+	asmbl_11978,asmbl_11980,asmbl_11981,asmbl_11982	none	STRG.16971.1,STRG.16971.2,Trinity_GG_26617_c0_g1_i2,Trinity_GG_26617_c0_g1_i3	4	STRG.16971.3,Trinity_GG_26617_c0_g1_i1	2
scaffold_8	starts_in_intron	5556340	5556340	-	asmbl_51837	none	blat.proc3825152.chain_2235	1	STRG.9976.1,blat.proc3825152.chain_2232,blat.proc3825152.chain_2233,blat.proc3825152.chain_2236	4
scaffold_7	spliced_intron	5928121	5929865	+	asmbl_49827	none	STRG.8902.2,Trinity_GG_22209_c0_g1_i4,blat.proc3825168.chain_1376	3	STRG.8902.1,STRG.8902.4,Trinity_GG_22209_c0_g1_i3,blat.proc3825168.chain_1373	4
scaffold_1	starts_in_intron	4118674	4118674	+	asmbl_1639	none	blat.proc3825164.chain_374	1	STRG.251.1,blat.proc3825164.chain_373	2
scaffold_7	alternate_exon	18773276	18773417	-	asmbl_51503	none	STRG.9694.2,blat.proc3825152.chain_1976	2	blat.proc3825152.chain_1977,blat.proc3825152.chain_1978	2
scaffold_17	retained_exon	7960323	7960383	-	asmbl_18064	none	STRG.20414.2,blat.proc3825158.chain_1456	2	STRG.20414.1,blat.proc3825158.chain_1457	2
scaffold_6	retained_intron	7516493	7516579	-	asmbl_48499,asmbl_48501	none	STRG.7655.2,blat.proc3825152.chain_15	2	STRG.7655.3,STRG.7655.5,blat.proc3825152.chain_14	3
scaffold_7	alternate_exon	1227342	1233709	+	asmbl_49600,asmbl_49607	none	Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1076	3	blat.proc3825168.chain_1068	1
scaffold_6	starts_in_intron	17039268	17039268	+	asmbl_47724	none	blat.proc3825168.chain_843	1	STRG.8418.1	1
scaffold_10	alternate_exon	7671862	7677632	+	asmbl_3292	none	STRG.12556.2,Trinity_GG_24268_c0_g1_i5,Trinity_GG_24268_c1_g1_i1,blat.proc3825170.chain_1221,blat.proc3825170.chain_1224	5	STRG.12556.1	1
scaffold_2	retained_intron	9191729	9191859	-	asmbl_23364,asmbl_23365	none	blat.proc3825148.chain_2200,blat.proc3825148.chain_2203	2	STRG.2171.1,STRG.2171.2,blat.proc3825148.chain_2197,blat.proc3825148.chain_2198,blat.proc3825148.chain_2199,blat.proc3825148.chain_2201,blat.proc3825148.chain_2202	7
scaffold_28	retained_exon	7880680	7880694	-	asmbl_38429	none	blat.proc3825162.chain_3026	1	STRG.29870.1,blat.proc3825162.chain_3029	2
scaffold_5	alt_acceptor	6667299	6667300	-	asmbl_44129	none	STRG.6073.1	1	STRG.6073.2,blat.proc3825150.chain_2279	2
scaffold_27	spliced_intron	4526378	4526769	+	asmbl_36302,asmbl_36303	none	STRG.28906.1,STRG.28906.2	2	blat.proc3825178.chain_2159	1
scaffold_6	retained_intron	8579544	8579666	+	asmbl_47154	none	blat.proc3825168.chain_181	1	STRG.7738.1,STRG.7738.2,STRG.7738.3,blat.proc3825168.chain_179	4
scaffold_16	alt_donor	434013	434014	-	asmbl_16871	none	blat.proc3825158.chain_196	1	blat.proc3825158.chain_202,blat.proc3825158.chain_204	2
scaffold_14	alternate_exon	12629700	12629772	-	asmbl_13581	none	STRG.17582.2,blat.proc3825156.chain_2421	2	STRG.17582.1,STRG.17582.3,STRG.17582.5,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2420,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	9
scaffold_2	alternate_exon	14204349	14205039	-	asmbl_23574	none	blat.proc3825148.chain_2405	1	STRG.2414.3,STRG.2414.4,blat.proc3825148.chain_2404	3
scaffold_3	retained_exon	14514078	14514131	-	asmbl_39385	none	STRG.3791.3,Trinity_GG_2101_c0_g1_i1,blat.proc3825148.chain_3738	3	STRG.3791.1	1
scaffold_7	retained_exon	18393031	18394507	-	asmbl_51468,asmbl_51474	none	STRG.9670.1,Trinity_GG_5439_c0_g1_i12,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016	4	STRG.9670.3,STRG.9670.4,blat.proc3825152.chain_2018,blat.proc3825152.chain_2020	4
scaffold_15	starts_in_intron	13201981	13201981	-	asmbl_14618	none	STRG.18756.1,blat.proc3825156.chain_3561	2	STRG.18756.2,blat.proc3825156.chain_3560	2
scaffold_14	alt_acceptor	8294618	8294619	-	asmbl_13282,asmbl_13284	none	STRG.17254.1,blat.proc3825156.chain_2068,blat.proc3825156.chain_2069	3	blat.proc3825156.chain_2067	1
scaffold_11	alt_donor	8096919	8096920	+	asmbl_5722	none	STRG.13822.2,Trinity_GG_24917_c0_g1_i5,blat.proc3825170.chain_2344	3	STRG.13822.1,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2347	3
scaffold_3	retained_intron	1487982	1488142	+	asmbl_39856	none	STRG.2973.1,Trinity_GG_18953_c0_g1_i3,blat.proc3825164.chain_3143	3	STRG.2973.2	1
scaffold_24	retained_intron	3655652	3655776	+	asmbl_32152,asmbl_32153	none	blat.proc3825176.chain_3465,blat.proc3825176.chain_3466	2	STRG.26550.1,STRG.26550.2,STRG.26550.3,STRG.26550.4,STRG.26550.5,STRG.26550.6,Trinity_GG_31970_c0_g1_i12,Trinity_GG_31970_c0_g1_i5,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463,blat.proc3825176.chain_3464,blat.proc3825176.chain_3467,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469,blat.proc3825176.chain_3470	15
scaffold_24	alt_acceptor	8958006	8958007	+	asmbl_32467	none	STRG.26918.1	1	STRG.26918.2,Trinity_GG_32190_c0_g1_i2,blat.proc3825178.chain_110	3
scaffold_20	alt_acceptor	429447	429448	+	asmbl_26353	none	STRG.22745.4	1	STRG.22745.1,STRG.22745.2,STRG.22745.5,Trinity_GG_16850_c4_g1_i1,Trinity_GG_29876_c0_g1_i1,blat.proc3825174.chain_3743,blat.proc3825174.chain_3744	7
scaffold_11	spliced_intron	3767045	3767446	-	asmbl_6574,asmbl_6575,asmbl_6576,asmbl_6577,asmbl_6580	none	STRG.13508.1,STRG.13508.2,STRG.13508.3,STRG.13508.4,Trinity_GG_7568_c0_g1_i9,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	7	Trinity_GG_7568_c0_g1_i3,Trinity_GG_7568_c0_g1_i8	2
scaffold_21	skipped_exon	8129636	8132125	-	asmbl_27894	none	blat.proc3825160.chain_1511	1	STRG.24349.5,blat.proc3825160.chain_1508,blat.proc3825160.chain_1509,blat.proc3825160.chain_1512	4
scaffold_4	ends_in_intron	9251483	9251483	+	asmbl_41604	none	blat.proc3825166.chain_1127	1	STRG.4719.1,STRG.4719.2,blat.proc3825166.chain_1128	3
scaffold_2	alternate_exon	6507524	6510560	-	asmbl_23209,asmbl_23210	none	STRG.2013.2,blat.proc3825148.chain_2017	2	STRG.2013.4,Trinity_GG_1121_c0_g1_i2,blat.proc3825148.chain_2018	3
scaffold_2	alt_donor	4006914	4006915	-	asmbl_23034	none	STRG.1838.2	1	STRG.1838.1,Trinity_GG_1019_c0_g1_i1,blat.proc3825148.chain_1809	3
scaffold_25	alt_donor	7339802	7339803	+	asmbl_33666,asmbl_33667,asmbl_33668,asmbl_33669	none	STRG.27588.1,STRG.27588.2,STRG.27588.4,Trinity_GG_32501_c0_g1_i3,Trinity_GG_32501_c0_g1_i5,Trinity_GG_32501_c0_g1_i6,blat.proc3825178.chain_655,blat.proc3825178.chain_656,blat.proc3825178.chain_657,blat.proc3825178.chain_658,blat.proc3825178.chain_659	11	STRG.27588.3	1
scaffold_3	spliced_intron	13801022	13801246	-	asmbl_39302	none	STRG.3726.2,blat.proc3825148.chain_3595	2	STRG.3726.1,Trinity_GG_2036_c0_g1_i1,Trinity_GG_2036_c0_g1_i4,blat.proc3825148.chain_3594,blat.proc3825148.chain_3596	5
scaffold_23	alt_donor	5340316	5340317	-	asmbl_30906,asmbl_30909	none	STRG.25911.1,blat.proc3825160.chain_3100,blat.proc3825160.chain_3101	3	blat.proc3825160.chain_3099	1
scaffold_3	starts_in_intron	6050043	6050043	-	asmbl_38881,asmbl_38882,asmbl_38883,asmbl_38889	none	STRG.3259.4,STRG.3259.6,STRG.3259.7,Trinity_GG_1752_c0_g1_i1,blat.proc3825148.chain_3087	5	STRG.3259.1,STRG.3259.3,blat.proc3825148.chain_3088	3
scaffold_17	ends_in_intron	1124587	1124587	+	asmbl_18592	none	blat.proc3825174.chain_836	1	STRG.19963.1,STRG.19963.2,STRG.19963.3,STRG.19963.4,blat.proc3825174.chain_835,blat.proc3825174.chain_837,blat.proc3825174.chain_838	7
scaffold_5	retained_intron	17211657	17211735	-	asmbl_44797	none	blat.proc3825150.chain_3041	1	STRG.6894.1,STRG.6894.2,blat.proc3825150.chain_3039,blat.proc3825150.chain_3040,blat.proc3825150.chain_3043	5
scaffold_43	alt_acceptor	547	548	-	asmbl_43695,asmbl_43696,asmbl_43697,asmbl_43698	none	STRG.30047.1,STRG.30047.2,STRG.30047.6,STRG.30047.7	4	STRG.30047.5,Trinity_GG_16850_c3_g1_i1,Trinity_GG_16850_c3_g1_i2,blat.proc3825162.chain_3211,blat.proc3825162.chain_3212	5
scaffold_4	alt_donor	13195544	13195545	-	asmbl_42985	none	STRG.4963.3,blat.proc3825150.chain_1137	2	STRG.4963.1,STRG.4963.2,blat.proc3825150.chain_1135,blat.proc3825150.chain_1136	4
scaffold_15	retained_intron	12742614	12743313	+	asmbl_15602	none	blat.proc3825172.chain_3377	1	STRG.18732.2,blat.proc3825172.chain_3379	2
scaffold_12	alternate_exon	4215575	4217714	+	asmbl_7592,asmbl_7593	none	STRG.14601.2,STRG.14601.3	2	STRG.14601.1,blat.proc3825170.chain_3167,blat.proc3825170.chain_3169	3
scaffold_13	retained_intron	16434082	16434150	+	asmbl_11574,asmbl_11575	none	STRG.16695.1,STRG.16695.2,blat.proc3825172.chain_1429	3	STRG.16695.3	1
scaffold_17	starts_in_intron	1519276	1519276	-	asmbl_17726	none	blat.proc3825158.chain_1068	1	STRG.19992.1,blat.proc3825158.chain_1067	2
scaffold_13	retained_exon	2375166	2375597	-	asmbl_9456,asmbl_9457,asmbl_9458	none	STRG.15553.1,STRG.15553.2,STRG.15553.3,blat.proc3825156.chain_448,blat.proc3825156.chain_449,blat.proc3825156.chain_450	6	STRG.15553.4	1
scaffold_1	spliced_intron	14216887	14216983	+	asmbl_2354	none	blat.proc3825164.chain_1132	1	STRG.1012.1,blat.proc3825164.chain_1133,blat.proc3825164.chain_1134	3
scaffold_4	retained_intron	7389727	7389948	+	asmbl_41497	none	STRG.4591.1,blat.proc3825166.chain_1062	2	STRG.4591.2	1
scaffold_4	skipped_exon	10451857	10452576	-	asmbl_42850	none	blat.proc3825150.chain_914	1	STRG.4796.1,STRG.4796.2,blat.proc3825150.chain_912,blat.proc3825150.chain_913	4
scaffold_1	spliced_intron	175417	175492	-	asmbl_11,asmbl_12,asmbl_14,asmbl_15	none	STRG.16.1,STRG.16.2,Trinity_GG_12_c0_g1_i4,Trinity_GG_12_c0_g1_i5,blat.proc3825148.chain_23,blat.proc3825148.chain_24,blat.proc3825148.chain_25,blat.proc3825148.chain_26	8	Trinity_GG_12_c0_g1_i1,blat.proc3825148.chain_27	2
scaffold_19	alt_donor	858402	858403	+	asmbl_21219	none	blat.proc3825174.chain_2854	1	STRG.21878.2,blat.proc3825174.chain_2853	2
scaffold_1	alternate_exon	11457777	11457891	-	asmbl_618	none	STRG.759.2,blat.proc3825148.chain_674	2	Trinity_GG_362_c0_g1_i5,blat.proc3825148.chain_670	2
scaffold_21	retained_intron	7421674	7421760	-	asmbl_27809	none	blat.proc3825160.chain_1445	1	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	5
scaffold_20	retained_intron	9185074	9185156	+	asmbl_26841	none	blat.proc3825160.chain_530,blat.proc3825176.chain_622	2	blat.proc3825160.chain_533	1
scaffold_18	retained_intron	2148780	2149152	-	asmbl_19708	none	STRG.21114.1,Trinity_GG_11834_c0_g1_i1,blat.proc3825158.chain_2087	3	STRG.21114.2,STRG.21114.3,blat.proc3825158.chain_2088	3
scaffold_5	starts_in_intron	14698831	14698831	+	asmbl_45959	none	Trinity_GG_20945_c0_g1_i2,blat.proc3825166.chain_2842	2	STRG.6673.1,STRG.6673.2,blat.proc3825166.chain_2841	3
scaffold_15	retained_intron	6080096	6080203	-	asmbl_14241	none	blat.proc3825156.chain_3120	1	STRG.18271.1,blat.proc3825156.chain_3121	2
scaffold_14	retained_intron	8695572	8695770	-	asmbl_13340	none	blat.proc3825156.chain_2146	1	STRG.17305.1,blat.proc3825156.chain_2143,blat.proc3825156.chain_2145	3
scaffold_17	alternate_exon	8221146	8221393	+	asmbl_18954	none	STRG.20449.3	1	STRG.20449.1,STRG.20449.2,blat.proc3825174.chain_1239,blat.proc3825174.chain_1242,blat.proc3825174.chain_1248	5
scaffold_20	ends_in_intron	5954211	5954211	-	asmbl_25806	none	Trinity_GG_12946_c0_g1_i1,blat.proc3825160.chain_290	2	STRG.23205.1,blat.proc3825160.chain_293	2
scaffold_18	retained_exon	2087503	2087627	-	asmbl_19704	none	STRG.21108.1,blat.proc3825158.chain_2025	2	STRG.21108.2	1
scaffold_14	retained_intron	1070202	1070949	+	asmbl_11789,asmbl_11793,asmbl_11795,asmbl_11796,asmbl_11798	none	STRG.16766.3,Trinity_GG_26535_c0_g1_i1,blat.proc3825172.chain_1533,blat.proc3825172.chain_1535,blat.proc3825172.chain_1537,blat.proc3825172.chain_1538	6	STRG.16766.1,STRG.16766.2,STRG.16766.5,Trinity_GG_26535_c0_g1_i7,blat.proc3825172.chain_1534,blat.proc3825172.chain_1536,blat.proc3825172.chain_1539	7
scaffold_3	ends_in_intron	15744885	15744885	-	asmbl_39437	none	Trinity_GG_2086_c1_g1_i1	1	STRG.3851.1,STRG.3851.2,STRG.3851.3,blat.proc3825148.chain_3706,blat.proc3825148.chain_3707	5
scaffold_19	ends_in_intron	12529445	12529445	-	asmbl_22514	none	Trinity_GG_12538_c0_g1_i2,blat.proc3825158.chain_3299	2	STRG.22575.1,Trinity_GG_12538_c0_g1_i1,blat.proc3825158.chain_3300	3
scaffold_1950	alt_acceptor	1064	1065	-	asmbl_22761	none	STRG.30680.2	1	STRG.30680.1	1
scaffold_18	alt_donor	1328476	1328477	+	asmbl_20338	none	STRG.21023.3	1	STRG.21023.1,STRG.21023.2,blat.proc3825174.chain_1860,blat.proc3825174.chain_1861,blat.proc3825174.chain_1862	5
scaffold_8	alt_donor	10578305	10578306	-	asmbl_52109	none	STRG.10294.2	1	STRG.10294.1,blat.proc3825152.chain_2539	2
scaffold_4	alt_donor	6499144	6499145	-	asmbl_42683	none	STRG.4512.2,blat.proc3825150.chain_768	2	STRG.4512.1,blat.proc3825150.chain_769	2
scaffold_28	spliced_intron	7721599	7722019	+	asmbl_37703,asmbl_37704,asmbl_37706,asmbl_37707	none	STRG.29845.1,STRG.29845.2,blat.proc3825178.chain_3018,blat.proc3825178.chain_3019,blat.proc3825178.chain_3021,blat.proc3825178.chain_3022	6	Trinity_GG_33846_c1_g1_i2	1
scaffold_3	retained_exon	3735950	3736073	+	asmbl_39968	none	STRG.3101.1,blat.proc3825164.chain_3309	2	STRG.3101.2,blat.proc3825164.chain_3308	2
scaffold_23	retained_exon	10976189	10976361	+	asmbl_31898,asmbl_31900,asmbl_31905,asmbl_31906	none	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5	STRG.26307.2	1
scaffold_10	spliced_intron	11909255	11909403	+	asmbl_3501,asmbl_3504,asmbl_3505	none	STRG.12828.1,STRG.12828.2,Trinity_GG_24345_c0_g1_i2,blat.proc3825170.chain_1352,blat.proc3825170.chain_1355	5	Trinity_GG_24345_c0_g1_i3,Trinity_GG_24345_c0_g1_i4,blat.proc3825170.chain_1353,blat.proc3825170.chain_1354	4
scaffold_6	alt_donor	14153087	14153088	-	asmbl_48987	none	STRG.8179.2	1	STRG.8179.1	1
scaffold_22	alternate_exon	7774764	7774825	+	asmbl_30218	none	STRG.25117.1	1	STRG.25117.2,blat.proc3825176.chain_2247	2
scaffold_26	spliced_intron	9844185	9844437	+	asmbl_35285,asmbl_35289	none	STRG.28546.2,blat.proc3825178.chain_1576	2	STRG.28546.1,STRG.28546.3,STRG.28546.5,blat.proc3825178.chain_1573,blat.proc3825178.chain_1574,blat.proc3825178.chain_1575,blat.proc3825178.chain_1577,blat.proc3825178.chain_1578,blat.proc3825178.chain_1579,blat.proc3825178.chain_1580,blat.proc3825178.chain_1581	11
scaffold_24	starts_in_intron	10487602	10487602	+	asmbl_32572	none	Trinity_GG_32229_c1_g1_i7,blat.proc3825178.chain_200	2	STRG.27019.1,STRG.27019.3,Trinity_GG_32229_c1_g1_i2,Trinity_GG_32229_c1_g1_i3,Trinity_GG_32229_c1_g1_i4,Trinity_GG_32229_c1_g1_i5,blat.proc3825178.chain_198,blat.proc3825178.chain_199,blat.proc3825178.chain_202,blat.proc3825178.chain_203	10
scaffold_12	retained_intron	12291136	12292234	-	asmbl_8854,asmbl_8855	none	STRG.15130.2,STRG.15130.4,Trinity_GG_8430_c0_g1_i4,Trinity_GG_8430_c1_g1_i1,blat.proc3825154.chain_3608,blat.proc3825154.chain_3609	6	STRG.15130.1	1
scaffold_20	spliced_intron	11942421	11942684	-	asmbl_26202,asmbl_26203	none	STRG.23697.1,blat.proc3825160.chain_777,blat.proc3825160.chain_778	3	blat.proc3825160.chain_776	1
scaffold_13	alt_donor	911810	911811	-	asmbl_9376,asmbl_9382,asmbl_9384	none	STRG.15470.3,STRG.15470.4,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271	5	STRG.15470.1,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_266,blat.proc3825156.chain_272	5
scaffold_12	spliced_intron	6947821	6948376	-	asmbl_8549,asmbl_8552	none	STRG.14768.1,STRG.14768.2,blat.proc3825154.chain_3277	3	blat.proc3825154.chain_3276,blat.proc3825154.chain_3278	2
scaffold_1	alt_acceptor	12049598	12049599	-	asmbl_682	none	blat.proc3825148.chain_753	1	STRG.817.3	1
scaffold_11	alternate_exon	11046769	11046889	-	asmbl_7013	none	STRG.14068.3	1	STRG.14068.1,STRG.14068.2	2
scaffold_10	starts_in_intron	8464169	8464169	-	asmbl_4592	none	blat.proc3825154.chain_1208	1	STRG.12603.1,STRG.12603.2,blat.proc3825154.chain_1209,blat.proc3825154.chain_1210	4
scaffold_6	alt_acceptor	13193088	13193089	+	asmbl_47484	none	STRG.8078.1,blat.proc3825168.chain_560	2	blat.proc3825168.chain_559	1
scaffold_23	starts_in_intron	3606635	3606635	+	asmbl_31454	none	blat.proc3825176.chain_2667	1	STRG.25782.1,blat.proc3825176.chain_2668	2
scaffold_8	alt_acceptor	7809915	7809916	+	asmbl_53000	none	STRG.10101.1,blat.proc3825168.chain_2674	2	STRG.10101.2	1
scaffold_22	ends_in_intron	6131013	6131013	+	asmbl_30097,asmbl_30102,asmbl_30103	none	blat.proc3825176.chain_2118	1	STRG.24968.4,blat.proc3825176.chain_2119,blat.proc3825176.chain_2120	3
scaffold_26	ends_in_intron	9316161	9316161	+	asmbl_35221	none	blat.proc3825178.chain_1613	1	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1611,blat.proc3825178.chain_1612,blat.proc3825178.chain_1614,blat.proc3825178.chain_1615,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	9
scaffold_9	retained_intron	3672539	3672630	-	asmbl_54927	none	blat.proc3825152.chain_3210	1	STRG.10993.1,STRG.10993.2,STRG.10993.4,STRG.10993.5,blat.proc3825152.chain_3211,blat.proc3825152.chain_3215	6
scaffold_2	spliced_intron	276356	276443	-	asmbl_22795	none	STRG.1517.1	1	Trinity_GG_824_c0_g1_i1,blat.proc3825148.chain_1490	2
scaffold_27	spliced_intron	314564	314644	-	asmbl_36658,asmbl_36659,asmbl_36660,asmbl_36661,asmbl_36662,asmbl_36663	none	STRG.28557.1,STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725,blat.proc3825162.chain_1728	6	STRG.28557.2,Trinity_GG_15948_c0_g1_i7	2
scaffold_3	retained_exon	6042295	6043728	-	asmbl_38879	none	STRG.3259.1	1	STRG.3259.3	1
scaffold_1	starts_in_intron	16238833	16238833	+	asmbl_2471	none	Trinity_GG_17995_c0_g1_i2,blat.proc3825164.chain_1307	2	STRG.1134.1,blat.proc3825164.chain_1306	2
scaffold_22	alt_acceptor	7246506	7246507	-	asmbl_29387	none	STRG.25063.3	1	STRG.25063.1,STRG.25063.2	2
scaffold_7	retained_intron	11147047	11147136	+	asmbl_50153,asmbl_50154,asmbl_50155	none	STRG.9262.2,blat.proc3825168.chain_1784,blat.proc3825168.chain_1788	3	STRG.9262.1,blat.proc3825168.chain_1785,blat.proc3825168.chain_1789,blat.proc3825168.chain_1790,blat.proc3825168.chain_1791	5
scaffold_20	alt_donor	11679287	11679288	-	asmbl_26179	none	STRG.23672.3,blat.proc3825160.chain_757	2	STRG.23672.1,blat.proc3825160.chain_760,blat.proc3825160.chain_761	3
scaffold_10	ends_in_intron	1175465	1175465	+	asmbl_2918,asmbl_2919	none	Trinity_GG_23997_c0_g2_i1,blat.proc3825170.chain_769,blat.proc3825170.chain_771	3	STRG.12009.2,blat.proc3825170.chain_770	2
scaffold_6	alt_donor	187725	187726	+	asmbl_46639	none	blat.proc3825166.chain_3308	1	STRG.7087.2	1
scaffold_21	alternate_exon	7726086	7726193	+	asmbl_28767	none	STRG.24316.2	1	STRG.24316.1	1
scaffold_7	spliced_intron	12386811	12386906	-	asmbl_51204	none	STRG.9338.1,blat.proc3825152.chain_1659	2	blat.proc3825152.chain_1654,blat.proc3825152.chain_1658	2
scaffold_25	starts_in_intron	6318457	6318457	-	asmbl_34354	none	blat.proc3825162.chain_922	1	STRG.27512.2	1
scaffold_13	spliced_intron	4351	4448	+	asmbl_10448,asmbl_10449,asmbl_10450	none	STRG.15424.1,STRG.15424.2,STRG.15424.3,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,blat.proc3825172.chain_134,blat.proc3825172.chain_138,blat.proc3825172.chain_141	9	Trinity_GG_25787_c0_g1_i1,blat.proc3825172.chain_137	2
scaffold_12	starts_in_intron	12297210	12297210	-	asmbl_8864	none	Trinity_GG_8463_c0_g1_i2	1	STRG.15129.1	1
scaffold_9	alt_donor	18446673	18446674	-	asmbl_55713	none	STRG.11889.2	1	STRG.11889.1,blat.proc3825154.chain_393	2
scaffold_2	alternate_exon	18772423	18772553	+	asmbl_25248	none	STRG.2756.1	1	STRG.2756.2	1
scaffold_24	retained_intron	9064471	9064576	+	asmbl_32486	none	Trinity_GG_32210_c0_g1_i2,blat.proc3825178.chain_138	2	STRG.26933.1,STRG.26933.2,STRG.26933.3,blat.proc3825178.chain_139	4
scaffold_2	alt_donor	2890067	2890068	-	asmbl_22931,asmbl_22933,asmbl_22938,asmbl_22943	none	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1667,blat.proc3825148.chain_1674	4	STRG.1736.3,blat.proc3825148.chain_1668,blat.proc3825148.chain_1669,blat.proc3825148.chain_1670,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672,blat.proc3825148.chain_1673	7
scaffold_20	starts_in_intron	4355652	4355652	+	asmbl_26576	none	STRG.23115.2	1	STRG.23115.1,blat.proc3825176.chain_288	2
scaffold_27	alt_donor	340971	340972	-	asmbl_36671	none	STRG.28561.2,blat.proc3825162.chain_1739	2	STRG.28561.1,STRG.28561.3,blat.proc3825162.chain_1740,blat.proc3825162.chain_1742,blat.proc3825162.chain_1743	5
scaffold_18	alternate_exon	1920748	1920882	-	asmbl_19672	none	Trinity_GG_11825_c1_g1_i1,blat.proc3825158.chain_2066	2	STRG.21084.1,STRG.21084.2,blat.proc3825158.chain_2065	3
scaffold_17	starts_in_intron	11959741	11959741	-	asmbl_18302	none	STRG.20722.1	1	STRG.20722.2,STRG.20722.3,STRG.20722.5,blat.proc3825158.chain_1749,blat.proc3825158.chain_1752	5
scaffold_6	spliced_intron	4319469	4320281	+	asmbl_46880	none	STRG.7409.2,blat.proc3825166.chain_3614	2	STRG.7409.1,Trinity_GG_21371_c0_g1_i7,blat.proc3825166.chain_3611,blat.proc3825166.chain_3612,blat.proc3825166.chain_3615	5
scaffold_7	alt_acceptor	12618433	12618434	+	asmbl_50280	none	STRG.9373.1,blat.proc3825168.chain_1903	2	STRG.9373.2	1
scaffold_12	retained_exon	8825193	8825578	+	asmbl_7827,asmbl_7830,asmbl_7831	none	STRG.14893.1,Trinity_GG_25551_c0_g1_i1,Trinity_GG_25551_c0_g1_i2,Trinity_GG_25551_c0_g1_i6,blat.proc3825170.chain_3464,blat.proc3825170.chain_3465,blat.proc3825170.chain_3467	7	Trinity_GG_25551_c0_g1_i5,blat.proc3825170.chain_3463	2
scaffold_22	alt_acceptor	9124112	9124113	-	asmbl_29513,asmbl_29514	none	STRG.25245.2,STRG.25245.3	2	STRG.25245.1	1
scaffold_1	retained_intron	15888312	15889037	+	asmbl_2456	none	STRG.1119.2,blat.proc3825164.chain_1260	2	STRG.1119.1,Trinity_GG_17960_c0_g1_i1,Trinity_GG_17960_c0_g1_i2,blat.proc3825164.chain_1258,blat.proc3825164.chain_1259	5
scaffold_3	starts_in_intron	15929814	15929814	-	asmbl_39458	none	blat.proc3825148.chain_3696	1	STRG.3873.1,blat.proc3825148.chain_3693,blat.proc3825148.chain_3697	3
scaffold_17	alt_acceptor	1128598	1128599	+	asmbl_18594	none	STRG.19963.4,blat.proc3825174.chain_838	2	STRG.19963.1,blat.proc3825174.chain_835	2
scaffold_7	starts_in_intron	2325665	2325665	+	asmbl_49640	none	Trinity_GG_22090_c0_g1_i1,blat.proc3825168.chain_1177	2	STRG.8677.1,blat.proc3825168.chain_1178	2
scaffold_2	alternate_exon	14132114	14137214	-	asmbl_23558,asmbl_23559,asmbl_23560	none	STRG.2408.1,blat.proc3825148.chain_2401,blat.proc3825148.chain_2402,blat.proc3825148.chain_2403	4	STRG.2408.2	1
scaffold_10	alt_acceptor	6052473	6052474	+	asmbl_3228,asmbl_3230	none	STRG.12435.3,STRG.12435.4	2	STRG.12435.1,blat.proc3825170.chain_1067,blat.proc3825170.chain_1069	3
scaffold_14	alternate_exon	6444848	6449781	-	asmbl_13135	none	STRG.17095.2,Trinity_GG_9602_c1_g1_i1,blat.proc3825156.chain_1923	3	Trinity_GG_9602_c0_g1_i3,blat.proc3825156.chain_1920,blat.proc3825156.chain_1921	3
scaffold_22	alt_acceptor	474206	474207	+	asmbl_29851	none	STRG.24691.2	1	STRG.24691.1,Trinity_GG_30917_c1_g1_i1,blat.proc3825176.chain_1740	3
scaffold_19	alt_donor	9556167	9556168	-	asmbl_22342	none	STRG.22391.1,blat.proc3825158.chain_3111	2	STRG.22391.2,blat.proc3825158.chain_3110	2
scaffold_13	retained_exon	11586690	11586913	+	asmbl_11293,asmbl_11294	none	blat.proc3825172.chain_1028,blat.proc3825172.chain_1036	2	STRG.16316.1,STRG.16316.5,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035	5
scaffold_20	retained_intron	11942421	11942684	-	asmbl_26204	none	blat.proc3825160.chain_776	1	STRG.23697.1,blat.proc3825160.chain_777,blat.proc3825160.chain_778	3
scaffold_6	starts_in_intron	13184742	13184742	-	asmbl_48899	none	blat.proc3825152.chain_435	1	STRG.8077.1,blat.proc3825152.chain_433,blat.proc3825152.chain_434	3
scaffold_14	alt_donor	10473665	10473666	+	asmbl_12319	none	STRG.17397.1	1	STRG.17397.2	1
scaffold_17	starts_in_intron	2535729	2535729	-	asmbl_17758	none	blat.proc3825158.chain_1075	1	STRG.20049.3,blat.proc3825158.chain_1076	2
scaffold_28	spliced_intron	9441074	9441164	-	asmbl_38515	none	STRG.29974.1	1	blat.proc3825162.chain_3166	1
scaffold_21	spliced_intron	8000621	8001304	-	asmbl_27882	none	STRG.24336.3,blat.proc3825160.chain_1502	2	STRG.24336.4,blat.proc3825160.chain_1500	2
scaffold_2	alternate_exon	12351946	12352010	+	asmbl_24788	none	STRG.2295.2	1	STRG.2295.1,blat.proc3825164.chain_2472	2
scaffold_7	starts_in_intron	1333088	1333088	-	asmbl_50715	none	STRG.8635.2,blat.proc3825152.chain_1051	2	blat.proc3825152.chain_1049,blat.proc3825152.chain_1050	2
scaffold_15	spliced_intron	12421730	12421933	+	asmbl_15558,asmbl_15562	none	STRG.18696.1,blat.proc3825172.chain_3324,blat.proc3825172.chain_3325	3	blat.proc3825172.chain_3323,blat.proc3825172.chain_3326	2
scaffold_1	spliced_intron	4389591	4389688	-	asmbl_191	none	STRG.272.1,blat.proc3825148.chain_234	2	Trinity_GG_132_c0_g1_i1,blat.proc3825148.chain_233	2
scaffold_18	alt_donor	12403783	12403784	-	asmbl_20147	none	STRG.21708.1,blat.proc3825158.chain_2575	2	STRG.21708.2,blat.proc3825158.chain_2573,blat.proc3825158.chain_2574	3
scaffold_27	ends_in_intron	2767086	2767086	-	asmbl_36852,asmbl_36855	none	Trinity_GG_16112_c0_g1_i1,blat.proc3825162.chain_2005,blat.proc3825162.chain_2006	3	STRG.28758.1,blat.proc3825162.chain_2004,blat.proc3825162.chain_2007	3
scaffold_6	starts_in_intron	2938641	2938641	-	asmbl_48204	none	blat.proc3825150.chain_3422	1	STRG.7300.1,blat.proc3825150.chain_3421	2
scaffold_27	starts_in_intron	7250966	7250966	+	asmbl_36438	none	blat.proc3825178.chain_2278	1	STRG.29086.1,Trinity_GG_33407_c0_g1_i2,blat.proc3825178.chain_2279	3
scaffold_12	spliced_intron	5452318	5452775	-	asmbl_8496	none	STRG.14701.2	1	STRG.14701.1	1
scaffold_12	retained_intron	6424684	6424834	-	asmbl_8534,asmbl_8535	none	STRG.14754.2,STRG.14754.3,blat.proc3825154.chain_3271,blat.proc3825154.chain_3272	4	STRG.14754.1,blat.proc3825154.chain_3270	2
scaffold_6	retained_intron	13577498	13577850	-	asmbl_48914	none	STRG.8098.2	1	STRG.8098.1,STRG.8098.4	2
scaffold_23	spliced_intron	5303321	5303517	+	asmbl_31558	none	Trinity_GG_31605_c0_g1_i4,blat.proc3825176.chain_2850	2	STRG.25908.1,STRG.25908.2,STRG.25908.3,Trinity_GG_31605_c0_g1_i1,Trinity_GG_31605_c0_g1_i2,Trinity_GG_31605_c0_g1_i3,Trinity_GG_31605_c0_g1_i5,blat.proc3825176.chain_2847,blat.proc3825176.chain_2848,blat.proc3825176.chain_2849,blat.proc3825176.chain_2851	11
scaffold_20	alternate_exon	7264915	7266842	+	asmbl_26717,asmbl_26719	none	STRG.23297.1,STRG.23297.2,blat.proc3825176.chain_477	3	STRG.23297.3,blat.proc3825176.chain_475	2
scaffold_14	ends_in_intron	6661408	6661408	+	asmbl_12096	none	blat.proc3825172.chain_1876	1	STRG.17125.1,blat.proc3825172.chain_1877	2
scaffold_17	alt_acceptor	4693416	4693417	+	asmbl_18790	none	STRG.20208.1	1	STRG.20208.2	1
scaffold_4	starts_in_intron	16315601	16315601	+	asmbl_41961	none	STRG.5200.2,blat.proc3825166.chain_1499	2	STRG.5200.1	1
scaffold_10	retained_intron	17204036	17204220	-	asmbl_5041	none	Trinity_GG_7334_c1_g2_i2,blat.proc3825154.chain_1689	2	blat.proc3825154.chain_1690	1
scaffold_8	alt_donor	11761437	11761438	-	asmbl_52165	none	STRG.10380.2	1	STRG.10380.3	1
scaffold_27	starts_in_intron	636647	636647	-	asmbl_36711	none	blat.proc3825162.chain_1840	1	STRG.28585.1,blat.proc3825162.chain_1841	2
scaffold_11	ends_in_intron	13248306	13248306	+	asmbl_6039	none	blat.proc3825170.chain_2691	1	STRG.14192.2,blat.proc3825170.chain_2692	2
scaffold_1	starts_in_intron	14609061	14609061	+	asmbl_2403	none	blat.proc3825164.chain_1230	1	STRG.1061.1,STRG.1061.2,blat.proc3825164.chain_1229	3
scaffold_12	spliced_intron	6424684	6424834	-	asmbl_8533	none	STRG.14754.1,blat.proc3825154.chain_3270	2	STRG.14754.2,STRG.14754.3,blat.proc3825154.chain_3271,blat.proc3825154.chain_3272	4
scaffold_6	spliced_intron	13984619	13985071	-	asmbl_48970,asmbl_48974	none	STRG.8159.1,blat.proc3825152.chain_614,blat.proc3825152.chain_615	3	Trinity_GG_4653_c0_g2_i6,blat.proc3825152.chain_611,blat.proc3825152.chain_612,blat.proc3825152.chain_617	4
scaffold_8	alt_acceptor	10484568	10484569	+	asmbl_53171	none	STRG.10286.2,blat.proc3825168.chain_2874	2	blat.proc3825168.chain_2873	1
scaffold_15	spliced_intron	15412571	15412679	+	asmbl_15775,asmbl_15779,asmbl_15783	none	STRG.18953.3,STRG.18953.4,blat.proc3825172.chain_3608	3	STRG.18953.1,STRG.18953.2,STRG.18953.5,STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3607,blat.proc3825172.chain_3609,blat.proc3825172.chain_3610,blat.proc3825172.chain_3611,blat.proc3825172.chain_3612	10
scaffold_13	alt_acceptor	7085246	7085247	-	asmbl_9849	none	STRG.16012.2	1	STRG.16012.1,blat.proc3825156.chain_983	2
scaffold_1	spliced_intron	14333858	14334027	-	asmbl_888	none	STRG.1032.1,blat.proc3825148.chain_1020	2	STRG.1032.2,STRG.1032.3,blat.proc3825148.chain_1021,blat.proc3825148.chain_1022	4
scaffold_10	spliced_intron	13300842	13301043	+	asmbl_3591,asmbl_3592	none	STRG.12924.1,blat.proc3825170.chain_1458,blat.proc3825170.chain_1460	3	blat.proc3825170.chain_1459	1
scaffold_2	alt_acceptor	15266468	15266469	+	asmbl_24996,asmbl_24997,asmbl_24999,asmbl_25000,asmbl_25001	none	STRG.2485.1,STRG.2485.2,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605	7	blat.proc3825164.chain_2609	1
scaffold_1	retained_intron	12335617	12335989	-	asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_705	none	Trinity_GG_444_c0_g1_i30,blat.proc3825148.chain_826,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_834,blat.proc3825148.chain_836	6	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_831,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	13
scaffold_14	alternate_exon	15831227	15831399	-	asmbl_13757	none	STRG.17828.2	1	STRG.17828.1	1
scaffold_19	alternate_exon	6138682	6138830	-	asmbl_22189	none	STRG.22139.1,blat.proc3825158.chain_2984	2	STRG.22139.2	1
scaffold_22	retained_exon	9720834	9721268	+	asmbl_30313	none	STRG.25308.1,blat.proc3825176.chain_2309	2	STRG.25308.4	1
scaffold_14	starts_in_intron	2377332	2377332	-	asmbl_12934,asmbl_12935,asmbl_12936,asmbl_12937,asmbl_12938,asmbl_12940	none	STRG.16854.1,STRG.16854.3,STRG.16854.5,STRG.16854.6,STRG.16854.7,blat.proc3825156.chain_1714	6	STRG.16854.2,STRG.16854.4	2
scaffold_5	ends_in_intron	8881815	8881815	+	asmbl_45583	none	blat.proc3825166.chain_2436	1	STRG.6228.1,Trinity_GG_20711_c0_g1_i1,blat.proc3825166.chain_2437	3
scaffold_6	alt_donor	3805720	3805721	+	asmbl_46861,asmbl_46862,asmbl_46868	none	STRG.7383.1,STRG.7383.2,STRG.7383.5	3	STRG.7383.3,STRG.7383.4	2
scaffold_23	spliced_intron	4316233	4316385	+	asmbl_31496,asmbl_31498,asmbl_31499,asmbl_31501,asmbl_31502	none	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2777,blat.proc3825176.chain_2778,blat.proc3825176.chain_2780	6	Trinity_GG_31566_c0_g1_i7,blat.proc3825176.chain_2775	2
scaffold_24	skipped_exon	7594889	7596265	-	asmbl_33034	none	STRG.26799.1	1	STRG.26799.2	1
scaffold_10	alt_donor	4058756	4058757	-	asmbl_4254,asmbl_4255	none	STRG.12246.1,STRG.12246.4,blat.proc3825154.chain_820,blat.proc3825154.chain_822	4	STRG.12246.2,STRG.12246.3,blat.proc3825154.chain_824	3
scaffold_7	retained_exon	4931639	4931698	+	asmbl_49773	none	STRG.8852.2,blat.proc3825168.chain_1347	2	STRG.8852.1,STRG.8852.3,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1348,blat.proc3825168.chain_1352	7
scaffold_6	alternate_exon	5429074	5429195	+	asmbl_46945	none	STRG.7513.1,blat.proc3825166.chain_3653	2	STRG.7513.2	1
scaffold_8	retained_intron	18541820	18542760	+	asmbl_53564	none	STRG.10751.1,blat.proc3825168.chain_3272	2	STRG.10751.2,STRG.10751.3,Trinity_GG_23268_c0_g1_i3,blat.proc3825168.chain_3270,blat.proc3825168.chain_3271	5
scaffold_24	alt_acceptor	4281252	4281253	+	asmbl_32179	none	STRG.26586.3	1	STRG.26586.1,STRG.26586.2,blat.proc3825176.chain_3528,blat.proc3825176.chain_3529	4
scaffold_19	starts_in_intron	1105257	1105257	-	asmbl_22025	none	Trinity_GG_12207_c0_g1_i5,blat.proc3825158.chain_2734	2	STRG.21903.1,STRG.21903.2,STRG.21903.3,STRG.21903.4,Trinity_GG_12207_c0_g1_i2,blat.proc3825158.chain_2733	6
scaffold_14	spliced_intron	11572188	11573625	-	asmbl_13499	none	STRG.17499.2,blat.proc3825156.chain_2304	2	STRG.17499.1,STRG.17499.3,STRG.17499.4,Trinity_GG_9808_c0_g1_i5	4
scaffold_7	retained_exon	1225105	1225206	+	asmbl_49586	none	STRG.8636.2,blat.proc3825168.chain_1043	2	STRG.8636.1,blat.proc3825168.chain_1042	2
scaffold_24	alt_acceptor	8643417	8643418	+	asmbl_32431	none	STRG.26874.2	1	STRG.26874.1,blat.proc3825178.chain_68	2
scaffold_9	starts_in_intron	9368447	9368447	+	asmbl_54199	none	blat.proc3825170.chain_42	1	STRG.11291.1,blat.proc3825170.chain_41,blat.proc3825170.chain_43	3
scaffold_6	alternate_exon	4986889	4986951	+	asmbl_46900,asmbl_46901	none	STRG.7472.1,STRG.7472.2,blat.proc3825166.chain_3595,blat.proc3825166.chain_3596	4	STRG.7472.3	1
scaffold_25	retained_intron	9338119	9338227	+	asmbl_33809	none	blat.proc3825178.chain_878	1	STRG.27762.1,blat.proc3825178.chain_877,blat.proc3825178.chain_879,blat.proc3825178.chain_882	4
scaffold_17	skipped_exon	14325639	14325908	-	asmbl_18421	none	Trinity_GG_11735_c0_g1_i2,blat.proc3825158.chain_1886	2	STRG.20906.1,blat.proc3825158.chain_1885	2
scaffold_3	ends_in_intron	13460461	13460461	+	asmbl_40440	none	blat.proc3825166.chain_148	1	STRG.3697.1,blat.proc3825166.chain_149,blat.proc3825166.chain_150,blat.proc3825166.chain_151	4
scaffold_4	alt_acceptor	19579607	19579608	-	asmbl_43453,asmbl_43454,asmbl_43455,asmbl_43456	none	STRG.5543.1,STRG.5543.2,blat.proc3825150.chain_1740,blat.proc3825150.chain_1741,blat.proc3825150.chain_1742,blat.proc3825150.chain_1743	6	STRG.5543.3	1
scaffold_24	retained_intron	8736860	8737041	-	asmbl_33096	none	Trinity_GG_15007_c0_g1_i6,blat.proc3825162.chain_185	2	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_184	4
scaffold_16	retained_exon	744376	744435	-	asmbl_16896,asmbl_16898	none	STRG.19055.1,blat.proc3825158.chain_184,blat.proc3825158.chain_185	3	blat.proc3825158.chain_189	1
scaffold_5	alt_donor	16285475	16285476	+	asmbl_46076	none	STRG.6827.2,Trinity_GG_21030_c0_g1_i5,blat.proc3825166.chain_2982	3	Trinity_GG_21030_c0_g1_i3,Trinity_GG_21030_c0_g1_i6,blat.proc3825166.chain_2983,blat.proc3825166.chain_2984	4
scaffold_3	alternate_exon	6190088	6196909	-	asmbl_38908,asmbl_38910,asmbl_38916,asmbl_38917	none	STRG.3266.1,STRG.3266.2,blat.proc3825148.chain_3119,blat.proc3825148.chain_3121,blat.proc3825148.chain_3123,blat.proc3825148.chain_3125	6	STRG.3266.4	1
scaffold_18	skipped_exon	7172231	7172664	-	asmbl_19926	none	STRG.21417.2,Trinity_GG_11987_c0_g1_i5,blat.proc3825158.chain_2335	3	STRG.21417.1,STRG.21417.3,Trinity_GG_11987_c0_g1_i3,blat.proc3825158.chain_2333	4
scaffold_15	spliced_intron	12748652	12748931	+	asmbl_15599,asmbl_15600,asmbl_15602	none	STRG.18732.1,STRG.18732.2,blat.proc3825172.chain_3377,blat.proc3825172.chain_3378,blat.proc3825172.chain_3379	5	blat.proc3825172.chain_3380	1
scaffold_18	alt_donor	8912796	8912797	-	asmbl_20053	none	blat.proc3825158.chain_2453	1	STRG.21558.1,STRG.21558.4,blat.proc3825158.chain_2447	3
scaffold_2	retained_intron	4579215	4579828	+	asmbl_24359,asmbl_24360	none	Trinity_GG_18341_c1_g1_i4,blat.proc3825164.chain_1977,blat.proc3825164.chain_1979	3	STRG.1886.1,STRG.1886.2,STRG.1886.3,blat.proc3825164.chain_1980	4
scaffold_20	alternate_exon	5437909	5437964	+	asmbl_26617	none	STRG.23161.2,Trinity_GG_30091_c0_g1_i3,blat.proc3825176.chain_347	3	STRG.23161.1,Trinity_GG_30091_c0_g1_i1,blat.proc3825176.chain_348	3
scaffold_6	alternate_exon	2851481	2851519	-	asmbl_48174	none	STRG.7283.3	1	STRG.7283.2	1
scaffold_21	spliced_intron	7495452	7495669	-	asmbl_27825,asmbl_27828	none	STRG.24281.1,STRG.24281.2,blat.proc3825160.chain_1415	3	blat.proc3825160.chain_1414	1
scaffold_15	skipped_exon	12030067	12032794	+	asmbl_15514,asmbl_15516	none	STRG.18644.1,Trinity_GG_27537_c0_g1_i1,Trinity_GG_27537_c0_g1_i3,blat.proc3825172.chain_3278,blat.proc3825172.chain_3279	5	STRG.18644.2,Trinity_GG_27537_c0_g1_i2,blat.proc3825172.chain_3276	3
scaffold_1	alt_donor	11457775	11457776	-	asmbl_618	none	STRG.759.2,blat.proc3825148.chain_674	2	STRG.759.1,blat.proc3825148.chain_673	2
scaffold_2	spliced_intron	7925080	7925321	-	asmbl_23295,asmbl_23298	none	STRG.2089.1,blat.proc3825148.chain_2077,blat.proc3825148.chain_2078	3	blat.proc3825148.chain_2075	1
scaffold_16	spliced_intron	3563930	3564366	-	asmbl_16983	none	STRG.19171.2,blat.proc3825158.chain_302	2	STRG.19171.1,blat.proc3825158.chain_300,blat.proc3825158.chain_301	3
scaffold_13	retained_intron	6686158	6686374	+	asmbl_10963	none	blat.proc3825172.chain_695	1	STRG.15961.1,Trinity_GG_26071_c0_g1_i1,blat.proc3825172.chain_694	3
scaffold_5	alt_acceptor	18824262	18824263	+	asmbl_46295	none	STRG.7012.2,Trinity_GG_21167_c0_g1_i1,blat.proc3825166.chain_3224	3	STRG.7012.1,Trinity_GG_21167_c0_g1_i2,blat.proc3825166.chain_3225	3
scaffold_6	alternate_exon	4987653	4987725	+	asmbl_46903	none	STRG.7472.3	1	STRG.7472.1,STRG.7472.2,blat.proc3825166.chain_3595,blat.proc3825166.chain_3596	4
scaffold_2	alt_acceptor	16291999	16292000	+	asmbl_25115,asmbl_25116	none	STRG.2564.1,STRG.2564.2,blat.proc3825164.chain_2763,blat.proc3825164.chain_2764	4	Trinity_GG_18726_c0_g1_i3,blat.proc3825164.chain_2765	2
scaffold_20	retained_intron	10384363	10384687	+	asmbl_26958	none	blat.proc3825176.chain_672	1	STRG.23583.3	1
scaffold_3	starts_in_intron	6065639	6065639	-	asmbl_38899	none	blat.proc3825148.chain_3132	1	STRG.3258.3	1
scaffold_6	alt_donor	7170247	7170248	+	asmbl_47054	none	STRG.7628.3	1	STRG.7628.1	1
scaffold_9	ends_in_intron	5759083	5759083	-	asmbl_55032	none	Trinity_GG_6190_c1_g1_i2,blat.proc3825152.chain_3401	2	STRG.11147.1,STRG.11147.3,STRG.11147.4,Trinity_GG_6190_c1_g1_i1,blat.proc3825152.chain_3402	5
scaffold_3	alt_acceptor	19814247	19814248	+	asmbl_40774,asmbl_40775,asmbl_40776,asmbl_40777,asmbl_40779	none	STRG.4097.2,STRG.4097.4,blat.proc3825166.chain_565,blat.proc3825166.chain_566,blat.proc3825166.chain_569	5	STRG.4097.1,STRG.4097.3,blat.proc3825166.chain_567,blat.proc3825166.chain_568,blat.proc3825166.chain_570	5
scaffold_21	alt_acceptor	5973902	5973903	+	asmbl_28598	none	STRG.24136.1,blat.proc3825176.chain_1309	2	blat.proc3825176.chain_1308	1
scaffold_1	starts_in_intron	7096014	7096014	-	asmbl_411	none	STRG.503.2	1	STRG.503.1,blat.proc3825148.chain_492,blat.proc3825148.chain_493	3
scaffold_3	spliced_intron	10275118	10275967	+	asmbl_40247,asmbl_40250,asmbl_40253,asmbl_40256,asmbl_40257	none	STRG.3467.1,STRG.3467.3,blat.proc3825164.chain_3727,blat.proc3825164.chain_3728,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734,blat.proc3825164.chain_3736	7	Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3730	2
scaffold_13	spliced_intron	3734461	3734631	+	asmbl_10730,asmbl_10731	none	Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i8,blat.proc3825172.chain_445,blat.proc3825172.chain_446	4	STRG.15695.3,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_444	3
scaffold_5	retained_intron	2234179	2234653	-	asmbl_43877	none	blat.proc3825150.chain_1993,blat.proc3825150.chain_1994,blat.proc3825150.chain_1996	3	STRG.5760.1,blat.proc3825150.chain_1995	2
scaffold_8	retained_intron	18108227	18108429	+	asmbl_53531	none	STRG.10716.2,Trinity_GG_23260_c0_g1_i3,blat.proc3825168.chain_3249	3	STRG.10716.1,Trinity_GG_23260_c0_g1_i1,blat.proc3825168.chain_3251	3
scaffold_1	alt_donor	6752969	6752970	+	asmbl_1851	none	STRG.465.2,blat.proc3825164.chain_605	2	STRG.465.1,blat.proc3825164.chain_606	2
scaffold_22	spliced_intron	7882885	7884431	-	asmbl_29430	none	blat.proc3825160.chain_2297	1	STRG.25144.1,blat.proc3825160.chain_2298	2
scaffold_19	spliced_intron	12107159	12107238	-	asmbl_22455,asmbl_22456,asmbl_22457	none	STRG.22539.1,STRG.22539.2,STRG.22539.5,blat.proc3825158.chain_3188,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	6	STRG.22539.3,blat.proc3825158.chain_3193	2
scaffold_22	alt_donor	4239757	4239758	-	asmbl_29220	none	blat.proc3825160.chain_2066	1	STRG.24845.2,Trinity_GG_13909_c0_g1_i4,blat.proc3825160.chain_2065	3
scaffold_10	retained_exon	13002488	13002626	+	asmbl_3571	none	STRG.12909.1,blat.proc3825170.chain_1524	2	STRG.12909.2,blat.proc3825170.chain_1525	2
scaffold_25	skipped_exon	9119773	9120068	+	asmbl_33782	none	STRG.27725.5	1	STRG.27725.6	1
scaffold_3	spliced_intron	16072508	16072625	+	asmbl_40607	none	STRG.3889.3	1	blat.proc3825166.chain_375	1
scaffold_8	alt_donor	16040585	16040586	-	asmbl_52352	none	STRG.10585.2,blat.proc3825152.chain_2822	2	STRG.10585.3	1
scaffold_14	starts_in_intron	4252290	4252290	+	asmbl_11993	none	Trinity_GG_26660_c0_g1_i2,blat.proc3825172.chain_1759	2	STRG.16987.1,Trinity_GG_26660_c0_g1_i3,blat.proc3825172.chain_1760	3
scaffold_23	skipped_exon	4949839	4950422	+	asmbl_31539	none	STRG.25886.1,Trinity_GG_31594_c0_g1_i3,blat.proc3825176.chain_2822	3	Trinity_GG_31594_c0_g1_i1,blat.proc3825176.chain_2824	2
scaffold_25	spliced_intron	6067602	6068378	-	asmbl_34317,asmbl_34319,asmbl_34320,asmbl_34321,asmbl_34322	none	STRG.27490.2,STRG.27490.3,blat.proc3825162.chain_845,blat.proc3825162.chain_846,blat.proc3825162.chain_848,blat.proc3825162.chain_850	6	STRG.27490.1,blat.proc3825162.chain_847,blat.proc3825162.chain_849	3
scaffold_20	starts_in_intron	11079629	11079629	-	asmbl_26134	none	blat.proc3825160.chain_594	1	STRG.23624.1,STRG.23624.2,blat.proc3825160.chain_591,blat.proc3825160.chain_592,blat.proc3825160.chain_593,blat.proc3825160.chain_595	6
scaffold_26	starts_in_intron	5483090	5483090	+	asmbl_34993,asmbl_34998	none	Trinity_GG_32931_c0_g1_i1,Trinity_GG_32931_c0_g1_i7,blat.proc3825178.chain_1352	3	STRG.28252.1,STRG.28252.2,STRG.28252.3,STRG.28252.4	4
scaffold_10	retained_exon	17683072	17683193	+	asmbl_3789	none	STRG.13220.2	1	STRG.13220.1	1
scaffold_26	retained_exon	3343796	3343936	-	asmbl_35482,asmbl_35483,asmbl_35485	none	STRG.28013.1,STRG.28013.2,blat.proc3825162.chain_1262	3	STRG.28013.3	1
scaffold_12	retained_intron	7422321	7422559	-	asmbl_8583,asmbl_8587	none	STRG.14825.1,blat.proc3825154.chain_3339,blat.proc3825154.chain_3340,blat.proc3825154.chain_3341	4	STRG.14825.3,blat.proc3825154.chain_3337	2
scaffold_14	retained_intron	8415776	8416021	+	asmbl_12242	none	STRG.17281.3,Trinity_GG_26820_c0_g1_i2,Trinity_GG_26820_c0_g1_i3,blat.proc3825172.chain_2051,blat.proc3825172.chain_2052	5	STRG.17281.1,STRG.17281.2,blat.proc3825172.chain_2049,blat.proc3825172.chain_2050	4
scaffold_23	alt_acceptor	2325275	2325276	+	asmbl_31394	none	STRG.25705.2,Trinity_GG_31501_c0_g1_i1	2	STRG.25705.1,Trinity_GG_31501_c0_g1_i2	2
scaffold_26	ends_in_intron	8442085	8442085	-	asmbl_35732	none	blat.proc3825162.chain_1575	1	STRG.28438.1,blat.proc3825162.chain_1576	2
scaffold_5	starts_in_intron	14130962	14130962	+	asmbl_45904	none	Trinity_GG_20901_c0_g1_i3,blat.proc3825166.chain_2767	2	STRG.6625.1,blat.proc3825166.chain_2768	2
scaffold_1	retained_intron	17729072	17729199	+	asmbl_2533	none	blat.proc3825164.chain_1408	1	STRG.1245.1	1
scaffold_22	retained_intron	224610	224758	-	asmbl_29074,asmbl_29080	none	STRG.24683.2,blat.proc3825160.chain_1904,blat.proc3825160.chain_1907	3	STRG.24683.1,STRG.24683.3,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1905,blat.proc3825160.chain_1908	6
scaffold_20	skipped_exon	11612162	11613978	-	asmbl_26169	none	STRG.23678.1	1	STRG.23678.2	1
scaffold_20	alt_donor	2844670	2844671	-	asmbl_25677,asmbl_25678	none	STRG.23019.1,blat.proc3825160.chain_41,blat.proc3825160.chain_43	3	STRG.23019.4,blat.proc3825160.chain_42	2
scaffold_5	retained_intron	11630266	11631086	-	asmbl_44415,asmbl_44419	none	blat.proc3825150.chain_2638,blat.proc3825150.chain_2639	2	blat.proc3825150.chain_2643	1
scaffold_13	starts_in_intron	3523950	3523950	-	asmbl_9547	none	STRG.15675.1,blat.proc3825156.chain_463	2	STRG.15675.2	1
scaffold_11	spliced_intron	8074409	8074589	-	asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6828	none	STRG.13814.1,Trinity_GG_7709_c1_g1_i2,blat.proc3825154.chain_2335	3	blat.proc3825154.chain_2336	1
scaffold_21	skipped_exon	58137	58705	-	asmbl_27271	none	STRG.23720.2,blat.proc3825160.chain_828	2	STRG.23720.1,STRG.23720.3,blat.proc3825160.chain_829,blat.proc3825160.chain_830	4
scaffold_1	alt_acceptor	10409360	10409361	-	asmbl_581,asmbl_582	none	STRG.676.2,blat.proc3825148.chain_694	2	STRG.676.1,blat.proc3825148.chain_693,blat.proc3825148.chain_695	3
scaffold_4	skipped_exon	13875672	13876976	-	asmbl_43018	none	STRG.5016.1,blat.proc3825150.chain_1179	2	blat.proc3825150.chain_1180	1
scaffold_4	starts_in_intron	17541568	17541568	+	asmbl_42057	none	blat.proc3825166.chain_1712	1	STRG.5341.1,blat.proc3825166.chain_1711	2
scaffold_15	spliced_intron	8620031	8620119	+	asmbl_15340,asmbl_15341,asmbl_15343,asmbl_15344	none	STRG.18409.1,STRG.18409.2,blat.proc3825172.chain_3042,blat.proc3825172.chain_3043,blat.proc3825172.chain_3044,blat.proc3825172.chain_3045	6	Trinity_GG_27395_c0_g1_i4,blat.proc3825172.chain_3046	2
scaffold_1	retained_intron	12564359	12564465	+	asmbl_2234	none	blat.proc3825164.chain_1057	1	STRG.868.1,blat.proc3825164.chain_1056	2
scaffold_2	ends_in_intron	1483801	1483801	+	asmbl_24204	none	STRG.1621.1,blat.proc3825164.chain_1819	2	STRG.1621.2	1
scaffold_17	retained_intron	7046365	7049246	+	asmbl_18888	none	STRG.20370.2,Trinity_GG_28477_c0_g2_i1,Trinity_GG_28477_c1_g1_i1,blat.proc3825174.chain_1230	4	STRG.20370.1,blat.proc3825174.chain_1223,blat.proc3825174.chain_1226	3
scaffold_19	starts_in_intron	11798988	11798988	+	asmbl_21723,asmbl_21724	none	Trinity_GG_29765_c0_g1_i4,blat.proc3825174.chain_3530,blat.proc3825174.chain_3531	3	STRG.22507.1,blat.proc3825174.chain_3529	2
scaffold_17	retained_exon	7101487	7101709	+	asmbl_18895	none	STRG.20382.1,blat.proc3825174.chain_1182	2	STRG.20382.2,blat.proc3825174.chain_1181	2
scaffold_6	alt_acceptor	8642197	8642198	+	asmbl_47168,asmbl_47169,asmbl_47170,asmbl_47172	none	STRG.7754.1,STRG.7754.3,blat.proc3825168.chain_188,blat.proc3825168.chain_189,blat.proc3825168.chain_190	5	STRG.7754.2	1
scaffold_10	starts_in_intron	7645643	7645643	+	asmbl_3283	none	Trinity_GG_24237_c0_g1_i1,blat.proc3825170.chain_1173	2	STRG.12550.1,blat.proc3825170.chain_1174	2
scaffold_10	spliced_intron	13458298	13458388	-	asmbl_4880	none	STRG.12936.1,blat.proc3825154.chain_1526	2	STRG.12936.2,blat.proc3825154.chain_1527	2
scaffold_18	starts_in_intron	371700	371700	-	asmbl_19577,asmbl_19582	none	blat.proc3825158.chain_1987,blat.proc3825158.chain_1988	2	STRG.20990.1,blat.proc3825158.chain_1985,blat.proc3825158.chain_1986,blat.proc3825158.chain_1989,blat.proc3825158.chain_1990	5
scaffold_12	starts_in_intron	5066350	5066350	-	asmbl_8478	none	blat.proc3825154.chain_3192	1	STRG.14679.1,blat.proc3825154.chain_3191	2
scaffold_10	alt_donor	8917449	8917450	+	asmbl_3342	none	STRG.12642.2,blat.proc3825170.chain_1194	2	blat.proc3825170.chain_1196	1
scaffold_5	retained_intron	9079063	9079449	-	asmbl_44264	none	blat.proc3825150.chain_2444	1	STRG.6246.1,Trinity_GG_3515_c0_g1_i1,blat.proc3825150.chain_2443	3
scaffold_9	alt_acceptor	15384503	15384504	+	asmbl_54563	none	STRG.11739.3	1	STRG.11739.1,blat.proc3825170.chain_501,blat.proc3825170.chain_503	3
scaffold_1	ends_in_intron	11708737	11708737	+	asmbl_2137	none	STRG.784.1	1	blat.proc3825164.chain_938	1
scaffold_5	alt_acceptor	13316098	13316099	-	asmbl_44542	none	blat.proc3825150.chain_2766	1	STRG.6579.1,blat.proc3825150.chain_2763	2
scaffold_5	retained_intron	5061259	5061405	+	asmbl_45339,asmbl_45341	none	STRG.5963.4,Trinity_GG_20579_c0_g1_i2,blat.proc3825166.chain_2190	3	STRG.5963.1,STRG.5963.2,STRG.5963.3,Trinity_GG_20579_c0_g1_i3,blat.proc3825166.chain_2191,blat.proc3825166.chain_2192	6
scaffold_15	spliced_intron	4753209	4753331	+	asmbl_15168,asmbl_15169	none	STRG.18193.1,STRG.18193.2,blat.proc3825172.chain_2871,blat.proc3825172.chain_2872	4	Trinity_GG_27290_c0_g1_i1,blat.proc3825172.chain_2870	2
scaffold_7	spliced_intron	271564	271669	+	asmbl_49543,asmbl_49544,asmbl_49545	none	STRG.8598.3,STRG.8598.4,STRG.8598.6	3	STRG.8598.1,blat.proc3825168.chain_1053	2
scaffold_17	starts_in_intron	1410807	1410807	-	asmbl_17709	none	blat.proc3825154.chain_498,blat.proc3825158.chain_1042	2	STRG.19988.1,blat.proc3825158.chain_1043	2
scaffold_2	starts_in_intron	7925321	7925321	-	asmbl_23299	none	blat.proc3825148.chain_2079	1	STRG.2089.1,blat.proc3825148.chain_2077,blat.proc3825148.chain_2078	3
scaffold_15	alternate_exon	2782259	2782399	-	asmbl_14051	none	STRG.18069.1	1	STRG.18069.2,STRG.18069.3,blat.proc3825156.chain_2898	3
scaffold_15	spliced_intron	15413379	15413488	+	asmbl_15775,asmbl_15779,asmbl_15780,asmbl_15784	none	STRG.18953.3,STRG.18953.7,blat.proc3825172.chain_3608,blat.proc3825172.chain_3609	4	STRG.18953.1,STRG.18953.2,STRG.18953.4,STRG.18953.5,STRG.18953.6,blat.proc3825172.chain_3607,blat.proc3825172.chain_3610,blat.proc3825172.chain_3611,blat.proc3825172.chain_3612	9
scaffold_13	alternate_exon	2337301	2337672	+	asmbl_10607	none	STRG.15564.9	1	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,blat.proc3825172.chain_222,blat.proc3825172.chain_224	6
scaffold_3	starts_in_intron	12421661	12421661	+	asmbl_40401	none	Trinity_GG_19353_c0_g1_i5	1	STRG.3637.1,STRG.3637.2,blat.proc3825166.chain_131,blat.proc3825166.chain_134	4
scaffold_14	alternate_exon	6774876	6774999	-	asmbl_13159	none	blat.proc3825156.chain_1933	1	STRG.17120.2,blat.proc3825156.chain_1934	2
scaffold_20	starts_in_intron	6759683	6759683	+	asmbl_26680	none	blat.proc3825176.chain_430	1	STRG.23253.1,blat.proc3825176.chain_431	2
scaffold_52	alt_acceptor	2425	2426	-	asmbl_46522,asmbl_46525	none	STRG.30060.2,STRG.30060.3,blat.proc3825162.chain_3236	3	STRG.30060.1,Trinity_GG_16867_c0_g1_i1,blat.proc3825162.chain_3233,blat.proc3825162.chain_3235	4
scaffold_11	retained_exon	9131081	9131092	+	asmbl_5870,asmbl_5872	none	blat.proc3825170.chain_2529,blat.proc3825170.chain_2533	2	STRG.13952.1,STRG.13952.2,blat.proc3825170.chain_2531,blat.proc3825170.chain_2532	4
scaffold_10	alt_acceptor	3065944	3065945	-	asmbl_4155,asmbl_4159	none	STRG.12130.2,blat.proc3825154.chain_662,blat.proc3825154.chain_663	3	STRG.12130.1,blat.proc3825154.chain_664	2
scaffold_3	alt_acceptor	7722710	7722711	-	asmbl_38985	none	STRG.3364.2,blat.proc3825148.chain_3171	2	STRG.3364.1	1
scaffold_3	retained_intron	14319899	14319995	-	asmbl_39356,asmbl_39357	none	STRG.3772.2,Trinity_GG_2048_c1_g1_i4,blat.proc3825148.chain_3617	3	STRG.3772.1,Trinity_GG_2048_c1_g1_i2,blat.proc3825148.chain_3616	3
scaffold_19	starts_in_intron	12467704	12467704	-	asmbl_22491,asmbl_22497	none	Trinity_GG_12581_c2_g1_i9,blat.proc3825158.chain_3391,blat.proc3825158.chain_3395	3	STRG.22587.1,STRG.22587.2,blat.proc3825158.chain_3392,blat.proc3825158.chain_3393	4
scaffold_10	ends_in_intron	13082041	13082041	-	asmbl_4859	none	STRG.12910.2	1	STRG.12910.1,blat.proc3825154.chain_1455	2
scaffold_27	alt_acceptor	2822761	2822762	-	asmbl_36860,asmbl_36861,asmbl_36862	none	STRG.28765.1,blat.proc3825162.chain_2010,blat.proc3825162.chain_2011,blat.proc3825162.chain_2012	4	blat.proc3825162.chain_2013	1
scaffold_16	alt_acceptor	11291582	11291583	+	asmbl_16570	none	STRG.19661.1,blat.proc3825174.chain_590	2	STRG.19661.2,STRG.19661.3	2
scaffold_8	retained_intron	8901327	8902097	-	asmbl_51980	none	STRG.10146.2,blat.proc3825152.chain_2431	2	STRG.10146.3	1
scaffold_22	alt_donor	5818114	5818115	-	asmbl_29286	none	STRG.24930.1	1	STRG.24930.2	1
scaffold_6	starts_in_intron	12523670	12523670	-	asmbl_48817,asmbl_48818,asmbl_48819	none	STRG.8011.2,STRG.8011.3,STRG.8011.4	3	STRG.8011.1,blat.proc3825152.chain_396,blat.proc3825152.chain_397,blat.proc3825152.chain_398	4
scaffold_15	spliced_intron	12435253	12435567	+	asmbl_15571,asmbl_15572,asmbl_15573	none	STRG.18701.1,blat.proc3825172.chain_3335,blat.proc3825172.chain_3339,blat.proc3825172.chain_3344	4	blat.proc3825172.chain_3337,blat.proc3825172.chain_3338,blat.proc3825172.chain_3340,blat.proc3825172.chain_3341,blat.proc3825172.chain_3343	5
scaffold_23	alt_acceptor	1125061	1125062	+	asmbl_31306	none	STRG.25593.1,blat.proc3825176.chain_2510	2	STRG.25593.2,blat.proc3825176.chain_2509	2
scaffold_4	ends_in_intron	1970835	1970835	+	asmbl_41148	none	blat.proc3825166.chain_622	1	STRG.4211.1,STRG.4211.2,Trinity_GG_19631_c0_g1_i1,Trinity_GG_19631_c0_g1_i3,blat.proc3825166.chain_620,blat.proc3825166.chain_621	6
scaffold_27	starts_in_intron	1417557	1417557	+	asmbl_36004,asmbl_36005	none	STRG.28637.2,STRG.28637.3	2	STRG.28637.1,Trinity_GG_33168_c0_g1_i2	2
scaffold_12	starts_in_intron	5091267	5091267	-	asmbl_8481	none	blat.proc3825154.chain_3164	1	STRG.14685.1,blat.proc3825154.chain_3162,blat.proc3825154.chain_3163	3
scaffold_14	spliced_intron	7508898	7509085	-	asmbl_13215,asmbl_13217,asmbl_13219	none	STRG.17196.1,blat.proc3825156.chain_1996,blat.proc3825156.chain_1998,blat.proc3825156.chain_2000	4	STRG.17196.3,blat.proc3825156.chain_1999	2
scaffold_23	alt_donor	6923527	6923528	-	asmbl_30994	none	STRG.26020.1,blat.proc3825160.chain_3134	2	STRG.26020.2,blat.proc3825160.chain_3135	2
scaffold_8	retained_intron	6161100	6161201	-	asmbl_51865,asmbl_51867	none	blat.proc3825152.chain_2270,blat.proc3825152.chain_2273	2	STRG.10030.1,STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	8
scaffold_21	alt_acceptor	4654508	4654509	-	asmbl_27578	none	STRG.24014.1,blat.proc3825160.chain_1142	2	STRG.24014.2	1
scaffold_28	ends_in_intron	1018046	1018046	+	asmbl_37301	none	blat.proc3825178.chain_2520	1	STRG.29316.1,blat.proc3825178.chain_2519	2
scaffold_13	alt_donor	11585754	11585755	+	asmbl_11286,asmbl_11290	none	STRG.16316.4,STRG.16316.5	2	STRG.16316.1,STRG.16316.3,blat.proc3825172.chain_1028,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	9
scaffold_9	starts_in_intron	11733087	11733087	+	asmbl_54370	none	Trinity_GG_23698_c0_g1_i3,blat.proc3825170.chain_273	2	STRG.11486.1,blat.proc3825170.chain_274	2
scaffold_26	alt_donor	4689201	4689202	-	asmbl_35585,asmbl_35587	none	STRG.28194.2,STRG.28194.3,blat.proc3825162.chain_1410	3	STRG.28194.1,blat.proc3825162.chain_1412	2
scaffold_20	starts_in_intron	11144437	11144437	+	asmbl_27019	none	Trinity_GG_30351_c0_g1_i2,blat.proc3825176.chain_751	2	STRG.23640.1,STRG.23640.2,STRG.23640.3,Trinity_GG_30351_c0_g1_i3,Trinity_GG_30351_c0_g1_i4,Trinity_GG_30351_c0_g1_i5,blat.proc3825176.chain_748,blat.proc3825176.chain_750,blat.proc3825176.chain_752	9
scaffold_17	alt_donor	14037372	14037373	-	asmbl_18400,asmbl_18402	none	STRG.20881.1,STRG.20881.2	2	STRG.20881.3	1
scaffold_14	retained_intron	2374520	2375412	-	asmbl_12936,asmbl_12940	none	STRG.16854.1,Trinity_GG_9462_c0_g1_i7	2	STRG.16854.2,STRG.16854.3,STRG.16854.4,STRG.16854.6	4
scaffold_20	alternate_exon	10007337	10012144	+	asmbl_26918	none	STRG.23547.1,Trinity_GG_30325_c0_g1_i1,blat.proc3825176.chain_711	3	STRG.23547.2	1
scaffold_23	retained_exon	5859322	5859333	+	asmbl_31605	none	blat.proc3825176.chain_2844	1	STRG.25970.2,Trinity_GG_31603_c0_g1_i2,blat.proc3825176.chain_2843	3
scaffold_8	spliced_intron	14432596	14432761	+	asmbl_53369	none	STRG.10530.1,blat.proc3825168.chain_3100	2	blat.proc3825168.chain_3099	1
scaffold_5	alt_acceptor	7315372	7315373	+	asmbl_45485,asmbl_45486	none	STRG.6126.2,blat.proc3825166.chain_2343	2	STRG.6126.1,blat.proc3825166.chain_2342	2
scaffold_5	ends_in_intron	15119098	15119098	-	asmbl_44646	none	STRG.6702.2,Trinity_GG_3769_c0_g1_i1,blat.proc3825150.chain_2901	3	STRG.6702.1	1
scaffold_5	alt_acceptor	5169337	5169338	-	asmbl_44034	none	STRG.5968.2	1	STRG.5968.1	1
scaffold_17	spliced_intron	8640140	8640241	-	asmbl_18108	none	STRG.20482.1,blat.proc3825158.chain_1523	2	blat.proc3825158.chain_1521	1
scaffold_19	starts_in_intron	13217205	13217205	-	asmbl_22611	none	blat.proc3825158.chain_3439	1	STRG.22653.1,STRG.22653.2,Trinity_GG_12588_c1_g1_i13,Trinity_GG_12588_c1_g1_i4,blat.proc3825158.chain_3428,blat.proc3825158.chain_3429,blat.proc3825158.chain_3430,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3435,blat.proc3825158.chain_3436	12
scaffold_26	ends_in_intron	3975638	3975638	-	asmbl_35520	none	Trinity_GG_15745_c0_g1_i1,blat.proc3825162.chain_1382	2	STRG.28090.1	1
scaffold_2	ends_in_intron	3632250	3632250	+	asmbl_24293	none	STRG.1787.3	1	STRG.1787.1,STRG.1787.2,blat.proc3825164.chain_1919	3
scaffold_1	spliced_intron	9897278	9897370	-	asmbl_561,asmbl_564	none	STRG.664.1,STRG.664.2,blat.proc3825148.chain_621	3	blat.proc3825148.chain_620	1
scaffold_8	retained_exon	12690957	12690998	+	asmbl_53325,asmbl_53329	none	STRG.10446.2,blat.proc3825168.chain_3007	2	STRG.10446.1,blat.proc3825168.chain_3008,blat.proc3825168.chain_3009	3
scaffold_8	alt_donor	10578385	10578386	-	asmbl_52108	none	STRG.10294.1,blat.proc3825152.chain_2539	2	STRG.10294.2	1
scaffold_4	ends_in_intron	14626491	14626491	+	asmbl_41901	none	blat.proc3825166.chain_1507	1	STRG.5088.1,STRG.5088.2,blat.proc3825166.chain_1506	3
scaffold_7	ends_in_intron	4514786	4514786	+	asmbl_49738	none	blat.proc3825168.chain_1274	1	STRG.8828.1,blat.proc3825168.chain_1275	2
scaffold_12	spliced_intron	12287220	12287724	-	asmbl_8854,asmbl_8857,asmbl_8859	none	STRG.15130.1,STRG.15130.2,blat.proc3825154.chain_3607	3	STRG.15130.3,STRG.15130.4,STRG.15130.5,Trinity_GG_8430_c0_g1_i1,blat.proc3825154.chain_3606	5
scaffold_43	spliced_intron	829	922	-	asmbl_43695	none	STRG.30047.2	1	STRG.30047.1,STRG.30047.5	2
scaffold_13	ends_in_intron	13692117	13692117	-	asmbl_10154	none	Trinity_GG_9200_c1_g1_i3,blat.proc3825156.chain_1282	2	STRG.16419.1	1
scaffold_1	spliced_intron	15888312	15889037	+	asmbl_2454	none	STRG.1119.1,Trinity_GG_17960_c0_g1_i1,Trinity_GG_17960_c0_g1_i2,blat.proc3825164.chain_1258,blat.proc3825164.chain_1259	5	STRG.1119.2,blat.proc3825164.chain_1260	2
scaffold_20	retained_exon	7862451	7862542	-	asmbl_25931,asmbl_25937	none	STRG.23336.1,blat.proc3825160.chain_415,blat.proc3825160.chain_416	3	STRG.23336.2,blat.proc3825160.chain_418	2
scaffold_13	spliced_intron	9608243	9608361	+	asmbl_11211,asmbl_11212	none	STRG.16227.1,STRG.16227.2,blat.proc3825172.chain_1038,blat.proc3825172.chain_1039,blat.proc3825172.chain_1042	5	blat.proc3825172.chain_1041	1
scaffold_24	starts_in_intron	8699397	8699397	+	asmbl_32435	none	blat.proc3825178.chain_71	1	STRG.26878.1,STRG.26878.2,blat.proc3825178.chain_72	3
scaffold_9	alt_donor	12143015	12143016	-	asmbl_55355	none	STRG.11531.1,blat.proc3825152.chain_3725	2	STRG.11531.2	1
scaffold_21	retained_exon	2166517	2166597	-	asmbl_27434,asmbl_27436,asmbl_27437	none	STRG.23841.1,blat.proc3825160.chain_907,blat.proc3825160.chain_908,blat.proc3825160.chain_909	4	STRG.23841.2	1
scaffold_2	spliced_intron	15686309	15686390	+	asmbl_25068,asmbl_25070	none	STRG.2522.2,STRG.2522.3,Trinity_GG_18746_c0_g1_i4,Trinity_GG_18746_c0_g1_i5,blat.proc3825164.chain_2816	5	Trinity_GG_18746_c0_g1_i1,blat.proc3825164.chain_2817	2
scaffold_19	ends_in_intron	2246882	2246882	-	asmbl_22054	none	blat.proc3825158.chain_2796	1	blat.proc3825158.chain_2795	1
scaffold_8	retained_exon	1339763	1339846	+	asmbl_52690	none	STRG.9765.1	1	blat.proc3825168.chain_2213	1
scaffold_4	spliced_intron	18296287	18296326	+	asmbl_42097	none	blat.proc3825166.chain_1704	1	STRG.5427.2,Trinity_GG_20274_c1_g1_i1	2
scaffold_3	alt_acceptor	13720565	13720566	-	asmbl_39293,asmbl_39294	none	STRG.3718.1,Trinity_GG_2032_c0_g1_i3,Trinity_GG_2032_c0_g1_i4,blat.proc3825148.chain_3576,blat.proc3825148.chain_3577	5	STRG.3718.2,Trinity_GG_2032_c0_g1_i1,blat.proc3825148.chain_3579	3
scaffold_2	ends_in_intron	5184345	5184345	-	asmbl_23135	none	Trinity_GG_1094_c0_g1_i5	1	STRG.1929.1,blat.proc3825148.chain_1965,blat.proc3825148.chain_1967,blat.proc3825148.chain_1970	4
scaffold_2	spliced_intron	14193588	14193798	-	asmbl_23568	none	STRG.2416.3	1	STRG.2416.1	1
scaffold_16	starts_in_intron	4910546	4910546	-	asmbl_17079	none	Trinity_GG_10809_c2_g1_i1,blat.proc3825158.chain_387	2	STRG.19268.1,STRG.19268.2,STRG.19268.3,Trinity_GG_10809_c0_g1_i3,blat.proc3825158.chain_384	5
scaffold_2	alt_donor	15686309	15686310	+	asmbl_25068,asmbl_25070	none	STRG.2522.2,STRG.2522.3,Trinity_GG_18746_c0_g1_i4,Trinity_GG_18746_c0_g1_i5,blat.proc3825164.chain_2816	5	STRG.2522.1,Trinity_GG_18746_c0_g1_i2,blat.proc3825164.chain_2814	3
scaffold_13	retained_exon	519725	519848	+	asmbl_10484,asmbl_10492	none	STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_184	5	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3
scaffold_6	ends_in_intron	10384784	10384784	+	asmbl_47280	none	blat.proc3825168.chain_328	1	STRG.7877.1,blat.proc3825168.chain_327,blat.proc3825168.chain_329	3
scaffold_2	alternate_exon	10909380	10909513	-	asmbl_23441	none	STRG.2247.2,blat.proc3825148.chain_2290	2	STRG.2247.1,blat.proc3825148.chain_2289	2
scaffold_5	starts_in_intron	16624513	16624513	-	asmbl_44764	none	blat.proc3825150.chain_3005	1	STRG.6848.1,blat.proc3825150.chain_3004	2
scaffold_6	starts_in_intron	14261368	14261368	-	asmbl_49001	none	blat.proc3825152.chain_560	1	STRG.8195.1,blat.proc3825152.chain_559	2
scaffold_2	retained_intron	15451748	15451824	+	asmbl_25044	none	blat.proc3825164.chain_2812	1	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809,blat.proc3825164.chain_2810,blat.proc3825164.chain_2811	9
scaffold_7	starts_in_intron	9918694	9918694	-	asmbl_51103	none	STRG.9202.2	1	STRG.9202.1,blat.proc3825152.chain_1568	2
scaffold_18	alternate_exon	1390317	1391629	-	asmbl_19617	none	STRG.21025.3,Trinity_GG_11785_c0_g1_i1,blat.proc3825158.chain_1984	3	STRG.21025.4,blat.proc3825158.chain_2003	2
scaffold_16	starts_in_intron	8579351	8579351	+	asmbl_16410	none	blat.proc3825174.chain_354	1	STRG.19485.1,STRG.19485.2,blat.proc3825174.chain_353,blat.proc3825174.chain_356,blat.proc3825174.chain_357	5
scaffold_23	starts_in_intron	1585161	1585161	+	asmbl_31344	none	Trinity_GG_31436_c0_g1_i1,blat.proc3825176.chain_2557	2	STRG.25635.1,Trinity_GG_31436_c0_g1_i2,blat.proc3825176.chain_2558	3
scaffold_18	alt_acceptor	7662195	7662196	+	asmbl_20766	none	STRG.21471.3	1	STRG.21471.5	1
scaffold_6	alt_acceptor	2902137	2902138	+	asmbl_46780,asmbl_46781	none	STRG.7291.1,STRG.7291.3,blat.proc3825166.chain_3491,blat.proc3825166.chain_3492	4	STRG.7291.2,STRG.7291.4	2
scaffold_2	ends_in_intron	4679175	4679175	+	asmbl_24377	none	STRG.1894.2	1	STRG.1894.1,blat.proc3825164.chain_1932,blat.proc3825164.chain_1933	3
scaffold_13	alternate_exon	11379298	11381630	-	asmbl_10089	none	STRG.16301.5	1	STRG.16301.7,Trinity_GG_9138_c0_g2_i1,blat.proc3825156.chain_1175	3
scaffold_3	alternate_exon	6064346	6065413	-	asmbl_38896	none	STRG.3258.3,blat.proc3825148.chain_3134	2	STRG.3258.1,STRG.3258.2,blat.proc3825148.chain_3126,blat.proc3825148.chain_3127,blat.proc3825148.chain_3128,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131	7
scaffold_13	starts_in_intron	8237460	8237460	-	asmbl_9960	none	blat.proc3825156.chain_1036	1	STRG.16116.1,blat.proc3825156.chain_1035,blat.proc3825156.chain_1037,blat.proc3825156.chain_1038	4
scaffold_22	alt_donor	10682938	10682939	-	asmbl_29616	none	STRG.25415.1	1	STRG.25415.2,STRG.25415.3,blat.proc3825160.chain_2610	3
scaffold_8	alt_acceptor	16386890	16386891	+	asmbl_53448	none	STRG.10620.1,Trinity_GG_23226_c0_g1_i4,blat.proc3825168.chain_3196	3	STRG.10620.2,STRG.10620.3,STRG.10620.4,Trinity_GG_23226_c0_g1_i2,Trinity_GG_23226_c0_g1_i3,Trinity_GG_23226_c0_g1_i6,blat.proc3825168.chain_3193,blat.proc3825168.chain_3195,blat.proc3825168.chain_3197	9
scaffold_28	alternate_exon	5612156	5612215	-	asmbl_38300	none	STRG.29697.5,Trinity_GG_16664_c0_g1_i1,blat.proc3825162.chain_2900	3	STRG.29697.1,STRG.29697.2,STRG.29697.3,STRG.29697.6,Trinity_GG_16664_c0_g1_i8,Trinity_GG_16664_c0_g1_i9,blat.proc3825162.chain_2897,blat.proc3825162.chain_2899,blat.proc3825162.chain_2901,blat.proc3825162.chain_2902	10
scaffold_10	alternate_exon	2718417	2718571	+	asmbl_3002	none	blat.proc3825170.chain_796	1	STRG.12090.1,blat.proc3825170.chain_795	2
scaffold_4	alternate_exon	5031567	5033785	-	asmbl_42554	none	STRG.4399.2	1	Trinity_GG_2462_c0_g1_i1,blat.proc3825150.chain_630	2
scaffold_10	retained_intron	1425641	1425931	+	asmbl_2934,asmbl_2936	none	STRG.12016.2,Trinity_GG_23995_c0_g1_i8,blat.proc3825170.chain_759,blat.proc3825170.chain_762	4	STRG.12016.1,STRG.12016.4,STRG.12016.5,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_760,blat.proc3825170.chain_763	6
scaffold_6	alt_donor	7171935	7171936	+	asmbl_47052,asmbl_47053,asmbl_47055	none	STRG.7628.1,STRG.7628.2,STRG.7628.4	3	blat.proc3825168.chain_83,blat.proc3825168.chain_84	2
scaffold_13	alternate_exon	12869879	12870371	-	asmbl_10142	none	STRG.16379.3,Trinity_GG_9176_c0_g1_i1,blat.proc3825156.chain_1236	3	STRG.16379.1	1
scaffold_2	spliced_intron	18711549	18711905	+	asmbl_25233,asmbl_25234	none	STRG.2748.1,STRG.2748.2,blat.proc3825164.chain_3004,blat.proc3825164.chain_3005	4	STRG.2748.3,Trinity_GG_18860_c1_g1_i4,blat.proc3825164.chain_3006	3
scaffold_5	retained_intron	15285942	15286100	-	asmbl_44657	none	STRG.6716.1,Trinity_GG_3775_c0_g1_i5,blat.proc3825150.chain_2909	3	STRG.6716.2,blat.proc3825150.chain_2911	2
scaffold_20	spliced_intron	1489870	1489939	+	asmbl_26415,asmbl_26416,asmbl_26418,asmbl_26419	none	STRG.22869.2,STRG.22869.3,STRG.22869.4,STRG.22869.6	4	STRG.22869.1	1
scaffold_24	retained_intron	8950507	8950872	-	asmbl_33126	none	Trinity_GG_15077_c0_g1_i2,blat.proc3825162.chain_301	2	STRG.26916.1,blat.proc3825162.chain_300	2
scaffold_12	alt_acceptor	5463765	5463766	-	asmbl_8501	none	STRG.14703.5	1	STRG.14703.1,STRG.14703.2,STRG.14703.3,STRG.14703.4,blat.proc3825154.chain_3235,blat.proc3825154.chain_3236,blat.proc3825154.chain_3237	7
scaffold_4	alternate_exon	12680226	12682135	-	asmbl_42947	none	STRG.4907.1,blat.proc3825150.chain_1096	2	STRG.4907.2,Trinity_GG_2733_c0_g1_i1,blat.proc3825150.chain_1093	3
scaffold_12	alt_donor	10539610	10539611	+	asmbl_7930	none	STRG.15023.2,Trinity_GG_25618_c0_g1_i1,blat.proc3825170.chain_3587	3	STRG.15023.1,Trinity_GG_25618_c0_g1_i2,blat.proc3825170.chain_3586	3
scaffold_10	starts_in_intron	13512582	13512582	-	asmbl_4894	none	STRG.12948.2,blat.proc3825154.chain_1540	2	STRG.12948.1,blat.proc3825154.chain_1541,blat.proc3825154.chain_1542	3
scaffold_22	starts_in_intron	11474058	11474058	+	asmbl_30390	none	Trinity_GG_31348_c1_g1_i1,blat.proc3825176.chain_2429	2	STRG.25490.1,Trinity_GG_31348_c0_g1_i2,blat.proc3825176.chain_2426,blat.proc3825176.chain_2427	4
scaffold_5	spliced_intron	2536271	2536552	+	asmbl_45171,asmbl_45173	none	STRG.5779.1,STRG.5779.4,blat.proc3825166.chain_2003,blat.proc3825166.chain_2005	4	STRG.5779.2,blat.proc3825166.chain_2004	2
scaffold_14	spliced_intron	11945131	11945237	+	asmbl_12408	none	STRG.17536.1,Trinity_GG_26949_c0_g1_i1,blat.proc3825172.chain_2263	3	Trinity_GG_26949_c0_g1_i2,blat.proc3825172.chain_2264	2
scaffold_15	alternate_exon	15442973	15443075	+	asmbl_15786,asmbl_15794	none	Trinity_GG_27706_c0_g1_i1,Trinity_GG_27706_c0_g1_i4,blat.proc3825172.chain_3619,blat.proc3825172.chain_3626	4	STRG.18935.1,STRG.18935.2,blat.proc3825172.chain_3624	3
scaffold_2	alt_acceptor	894264	894265	+	asmbl_24137,asmbl_24139,asmbl_24142,asmbl_24144	none	STRG.1566.2,STRG.1566.3,STRG.1566.4,Trinity_GG_18212_c0_g2_i7,blat.proc3825164.chain_1728,blat.proc3825164.chain_1730,blat.proc3825164.chain_1731	7	STRG.1566.1,STRG.1566.5,Trinity_GG_18212_c0_g2_i4,blat.proc3825164.chain_1725,blat.proc3825164.chain_1726,blat.proc3825164.chain_1727,blat.proc3825164.chain_1729	7
scaffold_20	retained_intron	5180909	5180942	+	asmbl_26609	none	STRG.23156.2	1	STRG.23156.1	1
scaffold_5	alt_acceptor	8538828	8538829	-	asmbl_44215,asmbl_44217,asmbl_44218	none	STRG.6198.3,STRG.6198.5,blat.proc3825150.chain_2418	3	STRG.6198.1,STRG.6198.4,blat.proc3825150.chain_2419,blat.proc3825150.chain_2421,blat.proc3825150.chain_2423	5
scaffold_27	alternate_exon	6782251	6782459	-	asmbl_37084	none	blat.proc3825162.chain_2277	1	STRG.29050.1,STRG.29050.2,blat.proc3825162.chain_2276,blat.proc3825162.chain_2279	4
scaffold_6	retained_intron	7935430	7936138	-	asmbl_48514,asmbl_48517	none	STRG.7676.2,blat.proc3825152.chain_72	2	STRG.7676.1,STRG.7676.3,STRG.7676.4,blat.proc3825152.chain_69,blat.proc3825152.chain_70,blat.proc3825152.chain_71,blat.proc3825152.chain_73	7
scaffold_28	alt_donor	7884628	7884629	+	asmbl_37713	none	STRG.29858.1,Trinity_GG_33828_c0_g1_i1,blat.proc3825178.chain_2975	3	STRG.29858.2	1
scaffold_6	alternate_exon	2490181	2490700	+	asmbl_46756	none	STRG.7248.4	1	STRG.7248.1,STRG.7248.5	2
scaffold_10	retained_intron	8492106	8492342	-	asmbl_4595,asmbl_4596	none	STRG.12607.2,blat.proc3825154.chain_1214	2	STRG.12607.1,blat.proc3825154.chain_1213	2
scaffold_13	starts_in_intron	7176104	7176104	-	asmbl_9854	none	Trinity_GG_9010_c0_g1_i2,blat.proc3825156.chain_923	2	STRG.16014.1,blat.proc3825156.chain_924	2
scaffold_10	starts_in_intron	8560677	8560677	-	asmbl_4602	none	blat.proc3825154.chain_1221	1	STRG.12611.1,blat.proc3825154.chain_1223	2
scaffold_17	retained_exon	6820268	6820384	-	asmbl_17989	none	STRG.20345.3	1	blat.proc3825158.chain_1392,blat.proc3825158.chain_1393	2
scaffold_5	ends_in_intron	2327876	2327876	-	asmbl_43887	none	Trinity_GG_3255_c0_g1_i2,blat.proc3825150.chain_1990	2	STRG.5761.1,STRG.5761.2,blat.proc3825150.chain_1991	3
scaffold_15	spliced_intron	4232365	4232536	+	asmbl_15128,asmbl_15129,asmbl_15132,asmbl_15134,asmbl_15135	none	STRG.18172.1,STRG.18172.2,blat.proc3825172.chain_2836,blat.proc3825172.chain_2838,blat.proc3825172.chain_2841,blat.proc3825172.chain_2842,blat.proc3825172.chain_2843	7	blat.proc3825172.chain_2837,blat.proc3825172.chain_2840	2
scaffold_6	alt_donor	10531207	10531208	+	asmbl_47286	none	blat.proc3825168.chain_336	1	STRG.7889.1	1
scaffold_1	skipped_exon	15306118	15306585	-	asmbl_955	none	STRG.1100.2	1	STRG.1100.1,blat.proc3825148.chain_965	2
scaffold_10	alternate_exon	10603456	10606340	+	asmbl_3428	none	blat.proc3825170.chain_1337	1	STRG.12752.1	1
scaffold_5	starts_in_intron	13891862	13891862	-	asmbl_44581	none	blat.proc3825150.chain_2808	1	STRG.6604.1,blat.proc3825150.chain_2809	2
scaffold_25	alt_acceptor	2089152	2089153	-	asmbl_34061	none	blat.proc3825162.chain_615	1	STRG.27219.1,STRG.27219.2	2
scaffold_16	retained_intron	14556348	14556439	-	asmbl_17464	none	Trinity_GG_11121_c0_g1_i2,blat.proc3825158.chain_873	2	STRG.19838.1	1
scaffold_15	retained_intron	15409801	15410226	+	asmbl_15771	none	STRG.18930.4,blat.proc3825172.chain_3591	2	STRG.18930.6,blat.proc3825172.chain_3589	2
scaffold_9	retained_intron	6400017	6400100	+	asmbl_54091,asmbl_54094	none	STRG.11175.2,STRG.11175.3,Trinity_GG_23514_c0_g1_i3,blat.proc3825168.chain_3671	4	STRG.11175.1,Trinity_GG_23514_c0_g1_i1,blat.proc3825168.chain_3672	3
scaffold_4	skipped_exon	7150686	7152429	+	asmbl_41468	none	STRG.4559.1	1	blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	2
scaffold_3	spliced_intron	13423924	13424513	-	asmbl_39263,asmbl_39264	none	STRG.3693.4,blat.proc3825148.chain_3590	2	STRG.3693.1,blat.proc3825148.chain_3584	2
scaffold_29	retained_intron	56911	57031	+	asmbl_38638	none	STRG.30016.1,Trinity_GG_33925_c1_g1_i1,blat.proc3825178.chain_3149	3	blat.proc3825178.chain_3174	1
scaffold_13	retained_exon	11381832	11381855	-	asmbl_10082	none	STRG.16301.2,blat.proc3825156.chain_1172	2	STRG.16301.3,STRG.16301.4,blat.proc3825156.chain_1169,blat.proc3825156.chain_1170,blat.proc3825156.chain_1173	5
scaffold_1	starts_in_intron	11095806	11095806	+	asmbl_2059	none	Trinity_GG_17769_c0_g1_i4	1	STRG.726.2	1
scaffold_6	spliced_intron	13577498	13577850	-	asmbl_48913,asmbl_48915	none	STRG.8098.1,STRG.8098.4	2	STRG.8098.2	1
scaffold_6	ends_in_intron	18010829	18010829	-	asmbl_49219	none	Trinity_GG_4846_c1_g2_i1,blat.proc3825152.chain_939	2	STRG.8488.1,blat.proc3825152.chain_937	2
scaffold_17	alt_acceptor	6798441	6798442	+	asmbl_18872	none	STRG.20333.2,blat.proc3825174.chain_1167	2	STRG.20333.1,blat.proc3825174.chain_1165	2
scaffold_7	ends_in_intron	13807084	13807084	+	asmbl_50377,asmbl_50378	none	STRG.9488.1,STRG.9488.4	2	STRG.9488.2	1
scaffold_5	skipped_exon	10419526	10422301	-	asmbl_44358	none	STRG.6337.2,blat.proc3825150.chain_2483	2	STRG.6337.1,blat.proc3825150.chain_2482	2
scaffold_15	ends_in_intron	5477377	5477377	-	asmbl_14217	none	blat.proc3825156.chain_3094	1	STRG.18241.1	1
scaffold_16	starts_in_intron	3869007	3869007	-	asmbl_17011	none	blat.proc3825158.chain_337	1	STRG.19196.1,STRG.19196.2,STRG.19196.3,blat.proc3825158.chain_332,blat.proc3825158.chain_333	5
scaffold_12	spliced_intron	2984860	2985625	-	asmbl_8340,asmbl_8341	none	STRG.14535.1,STRG.14535.2,blat.proc3825154.chain_3027	3	Trinity_GG_8109_c0_g1_i1,blat.proc3825154.chain_3028	2
scaffold_10	spliced_intron	3129058	3129956	-	asmbl_4167	none	STRG.12138.1,Trinity_GG_6767_c0_g1_i3,blat.proc3825154.chain_701	3	STRG.12138.2,Trinity_GG_6767_c0_g1_i1,Trinity_GG_6767_c0_g1_i4,blat.proc3825154.chain_699,blat.proc3825154.chain_700	5
scaffold_3	alt_donor	10631385	10631386	+	asmbl_40284	none	STRG.3513.3,blat.proc3825164.chain_3682	2	STRG.3513.1,STRG.3513.2,STRG.3513.4,STRG.3513.5,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3684,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688,blat.proc3825164.chain_3689,blat.proc3825164.chain_3691	12
scaffold_10	alternate_exon	17196969	17200451	+	asmbl_3750,asmbl_3751	none	STRG.13168.1,STRG.13168.2	2	Trinity_GG_24554_c0_g1_i2,blat.proc3825170.chain_1732	2
scaffold_9	retained_intron	8934348	8934433	+	asmbl_54183	none	blat.proc3825170.chain_94	1	STRG.11279.2,STRG.11279.3,blat.proc3825170.chain_95	3
scaffold_21	ends_in_intron	4100813	4100813	+	asmbl_28505	none	STRG.24000.3	1	STRG.24000.1	1
scaffold_18	retained_intron	1893653	1894712	-	asmbl_19653,asmbl_19657,asmbl_19659	none	STRG.21081.1,STRG.21081.10,STRG.21081.6,STRG.21081.9,blat.proc3825158.chain_2019	5	blat.proc3825158.chain_2010,blat.proc3825158.chain_2011,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	8
scaffold_6	starts_in_intron	7167841	7167841	+	asmbl_47049	none	blat.proc3825168.chain_19	1	STRG.7622.1,blat.proc3825168.chain_20	2
scaffold_21	skipped_exon	9705783	9707076	-	asmbl_27961	none	STRG.24431.1	1	STRG.24431.2	1
scaffold_17	retained_intron	3839188	3839302	+	asmbl_18743	none	blat.proc3825174.chain_971	1	STRG.20149.1,blat.proc3825174.chain_972,blat.proc3825174.chain_973	3
scaffold_1	starts_in_intron	18091615	18091615	-	asmbl_1090	none	blat.proc3825148.chain_1274	1	STRG.1273.1	1
scaffold_17	alternate_exon	8399215	8399364	-	asmbl_18093,asmbl_18096	none	STRG.20461.2,Trinity_GG_11516_c0_g1_i1,blat.proc3825158.chain_1514	3	STRG.20461.1,blat.proc3825158.chain_1515	2
scaffold_12	retained_intron	4784663	4785218	-	asmbl_8449	none	Trinity_GG_8171_c0_g1_i15,blat.proc3825154.chain_3146	2	STRG.14660.1,blat.proc3825154.chain_3151,blat.proc3825154.chain_3152	3
scaffold_2	alt_donor	4624725	4624726	+	asmbl_24373	none	blat.proc3825164.chain_2018	1	STRG.1884.1	1
scaffold_9	retained_intron	8396407	8396490	+	asmbl_54169	none	Trinity_GG_23603_c0_g1_i5,blat.proc3825170.chain_60	2	STRG.11261.1,STRG.11261.2,STRG.11261.3,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_59,blat.proc3825170.chain_61,blat.proc3825170.chain_62	8
scaffold_10	spliced_intron	3063468	3063729	-	asmbl_4154	none	STRG.12127.2,blat.proc3825154.chain_627	2	STRG.12127.1,Trinity_GG_6721_c0_g1_i2,blat.proc3825154.chain_626	3
scaffold_6	alt_acceptor	12534638	12534639	-	asmbl_48822	none	STRG.8010.3	1	STRG.8010.1,STRG.8010.2,blat.proc3825152.chain_399,blat.proc3825152.chain_400	4
scaffold_5	retained_intron	10195945	10196056	-	asmbl_44327	none	blat.proc3825150.chain_2527	1	STRG.6323.1,STRG.6323.2,STRG.6323.3,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2531,blat.proc3825150.chain_2533	8
scaffold_7	ends_in_intron	732231	732231	-	asmbl_50702	none	STRG.8609.3	1	STRG.8609.1,STRG.8609.2,Trinity_GG_4925_c0_g1_i5,blat.proc3825152.chain_1077,blat.proc3825152.chain_1079	5
scaffold_9	skipped_exon	5082362	5084569	+	asmbl_53990	none	STRG.11088.2	1	STRG.11088.1,STRG.11088.3,STRG.11088.4	3
scaffold_8	retained_intron	11852296	11852549	+	asmbl_53286	none	Trinity_GG_23130_c0_g1_i6,blat.proc3825168.chain_3014	2	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3013,blat.proc3825168.chain_3015,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	10
scaffold_18	alt_donor	1512722	1512723	+	asmbl_20359	none	STRG.21044.2	1	STRG.21044.1,STRG.21044.3,blat.proc3825174.chain_1986	3
scaffold_22	retained_exon	5981805	5981878	-	asmbl_29302	none	STRG.24948.4	1	STRG.24948.1,STRG.24948.2,STRG.24948.3	3
scaffold_15	starts_in_intron	6882713	6882713	-	asmbl_14266	none	blat.proc3825156.chain_3158	1	STRG.18301.1,STRG.18301.2,STRG.18301.3,STRG.18301.4,STRG.18301.5,STRG.18301.6,STRG.18301.7,Trinity_GG_10293_c0_g1_i10,Trinity_GG_10293_c0_g1_i6,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3154,blat.proc3825156.chain_3156,blat.proc3825156.chain_3157,blat.proc3825156.chain_3159	16
scaffold_10	spliced_intron	2787857	2787930	-	asmbl_4131,asmbl_4134,asmbl_4136	none	STRG.12105.1,Trinity_GG_6692_c0_g1_i1,Trinity_GG_6692_c0_g1_i6,blat.proc3825154.chain_580,blat.proc3825154.chain_582,blat.proc3825154.chain_583,blat.proc3825154.chain_585,blat.proc3825154.chain_586	8	Trinity_GG_6692_c0_g1_i3,blat.proc3825154.chain_581	2
scaffold_24	alternate_exon	2960830	2960995	-	asmbl_32809	none	STRG.26507.2	1	STRG.26507.1,Trinity_GG_14797_c0_g1_i2,blat.proc3825160.chain_3584,blat.proc3825160.chain_3585,blat.proc3825160.chain_3587	5
scaffold_3	retained_intron	10305664	10306094	+	asmbl_40261	none	STRG.3476.2,Trinity_GG_19250_c1_g1_i2,blat.proc3825164.chain_3699	3	STRG.3476.1,Trinity_GG_19250_c1_g1_i1,Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700,blat.proc3825164.chain_3702	5
scaffold_28	spliced_intron	6557835	6557938	-	asmbl_38360	none	STRG.29755.1,blat.proc3825162.chain_2944	2	STRG.29755.2,blat.proc3825162.chain_2943	2
scaffold_3	spliced_intron	10628322	10628697	+	asmbl_40283,asmbl_40290	none	STRG.3513.5,STRG.3513.6,blat.proc3825164.chain_3689	3	blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3688	3
scaffold_13	retained_intron	394778	395582	-	asmbl_9343,asmbl_9346,asmbl_9348	none	Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_353,blat.proc3825156.chain_359,blat.proc3825156.chain_366	6	STRG.15444.1,STRG.15444.3,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_352,blat.proc3825156.chain_355,blat.proc3825156.chain_364	9
scaffold_5	alt_donor	4948983	4948984	+	asmbl_45320	none	STRG.5954.4	1	STRG.5954.1,Trinity_GG_20574_c0_g1_i1,blat.proc3825166.chain_2183	3
scaffold_16	retained_exon	206369	206450	+	asmbl_16006	none	Trinity_GG_27729_c0_g1_i1,blat.proc3825172.chain_3661	2	STRG.19008.1,Trinity_GG_27729_c0_g1_i2,Trinity_GG_27729_c0_g1_i3,blat.proc3825172.chain_3659,blat.proc3825172.chain_3660	5
scaffold_7	alt_donor	16155146	16155147	+	asmbl_50466	none	STRG.9579.2,Trinity_GG_22634_c0_g1_i1,blat.proc3825168.chain_2118	3	STRG.9579.1,STRG.9579.3,Trinity_GG_22634_c0_g1_i2,blat.proc3825168.chain_2117	4
scaffold_22	retained_intron	485089	485440	+	asmbl_29855	none	blat.proc3825176.chain_1750	1	blat.proc3825176.chain_1752	1
scaffold_20	retained_intron	1624100	1624144	-	asmbl_25593	none	blat.proc3825160.chain_10	1	STRG.22899.3	1
scaffold_11	spliced_intron	13253413	13253723	-	asmbl_7126	none	blat.proc3825154.chain_2770	1	STRG.14198.1,STRG.14198.4,blat.proc3825154.chain_2769,blat.proc3825154.chain_2772,blat.proc3825154.chain_2773	5
scaffold_13	spliced_intron	16460036	16460303	-	asmbl_10302	none	Trinity_GG_9330_c0_g1_i3,blat.proc3825156.chain_1487	2	STRG.16703.2,blat.proc3825156.chain_1486	2
scaffold_18	alternate_exon	12935348	12935402	+	asmbl_20983	none	blat.proc3825158.chain_2618	1	STRG.21740.1,STRG.21740.4	2
scaffold_21	starts_in_intron	1689745	1689745	+	asmbl_28357	none	blat.proc3825176.chain_1071	1	STRG.23822.1,blat.proc3825176.chain_1072	2
scaffold_1	starts_in_intron	4601904	4601904	+	asmbl_1679	none	Trinity_GG_17443_c0_g1_i2,blat.proc3825164.chain_293	2	STRG.287.1,blat.proc3825164.chain_292	2
scaffold_6	alt_acceptor	12654091	12654092	+	asmbl_47433	none	blat.proc3825168.chain_448	1	STRG.8027.1,blat.proc3825168.chain_449	2
scaffold_12	spliced_intron	12349852	12350033	+	asmbl_7991,asmbl_7994	none	STRG.15140.1,Trinity_GG_25652_c0_g1_i2,blat.proc3825170.chain_3644,blat.proc3825170.chain_3645	4	Trinity_GG_25652_c0_g1_i3,blat.proc3825170.chain_3646	2
scaffold_13	retained_intron	16048795	16048914	+	asmbl_11548	none	STRG.16642.3	1	STRG.16642.1	1
scaffold_25	alternate_exon	8700444	8702377	-	asmbl_34465	none	STRG.27695.5	1	STRG.27695.4,Trinity_GG_15507_c1_g1_i1,blat.proc3825162.chain_1025,blat.proc3825162.chain_1027	4
scaffold_11	skipped_exon	3497550	3498550	+	asmbl_5439	none	STRG.13484.2	1	STRG.13484.1,blat.proc3825170.chain_2033,blat.proc3825170.chain_2034	3
scaffold_10	alt_acceptor	8442046	8442047	-	asmbl_4589	none	STRG.12596.2	1	STRG.12596.1,blat.proc3825154.chain_1196	2
scaffold_19	retained_intron	5461618	5461705	+	asmbl_21374	none	Trinity_GG_29546_c0_g3_i1,blat.proc3825174.chain_3162	2	blat.proc3825174.chain_3157	1
scaffold_28	retained_intron	5014676	5014754	+	asmbl_37558	none	Trinity_GG_33747_c0_g1_i1,blat.proc3825178.chain_2829	2	STRG.29651.1,STRG.29651.2,Trinity_GG_33747_c0_g1_i4,blat.proc3825178.chain_2828,blat.proc3825178.chain_2830	5
scaffold_27	skipped_exon	7521642	7522244	+	asmbl_36465	none	STRG.29117.1	1	STRG.29117.4	1
scaffold_27	alt_acceptor	5802259	5802260	-	asmbl_37028	none	STRG.28984.1,blat.proc3825162.chain_2197,blat.proc3825162.chain_2198	3	STRG.28984.2	1
scaffold_10	alt_donor	1292300	1292301	+	asmbl_2922	none	STRG.12028.3,Trinity_GG_23971_c0_g2_i1,blat.proc3825170.chain_724	3	STRG.12028.1,blat.proc3825170.chain_725	2
scaffold_14	ends_in_intron	15232352	15232352	+	asmbl_12573	none	STRG.17749.1,Trinity_GG_27060_c0_g1_i1,blat.proc3825172.chain_2447	3	STRG.17749.2	1
scaffold_24	retained_exon	4319490	4319675	+	asmbl_32188	none	STRG.26600.3	1	STRG.26600.1	1
scaffold_2	retained_intron	15805763	15805856	-	asmbl_23659	none	Trinity_GG_1390_c0_g1_i2,blat.proc3825148.chain_2492	2	STRG.2529.1	1
scaffold_3	retained_exon	18156321	18156395	-	asmbl_39597	none	STRG.4025.1,blat.proc3825150.chain_206	2	STRG.4025.3,STRG.4025.4	2
scaffold_3	alt_acceptor	5870708	5870709	+	asmbl_40089	none	STRG.3249.2	1	STRG.3249.1,blat.proc3825164.chain_3504	2
scaffold_19	alt_donor	11336405	11336406	-	asmbl_22380	none	STRG.22468.1,Trinity_GG_12501_c0_g1_i2,blat.proc3825158.chain_3222	3	STRG.22468.2,Trinity_GG_12501_c0_g1_i1,blat.proc3825158.chain_3223	3
scaffold_3	alternate_exon	13176884	13176922	+	asmbl_40435	none	STRG.3682.2	1	STRG.3682.1	1
scaffold_5	starts_in_intron	15525907	15525907	-	asmbl_44689	none	Trinity_GG_3783_c0_g1_i2,blat.proc3825150.chain_2925	2	STRG.6742.1,blat.proc3825150.chain_2923	2
scaffold_21	spliced_intron	8295961	8296045	-	asmbl_27918	none	STRG.24373.2,blat.proc3825160.chain_1539	2	STRG.24373.1,blat.proc3825160.chain_1540	2
scaffold_9	alternate_exon	649648	650300	+	asmbl_53785	none	STRG.10795.3,blat.proc3825168.chain_3339,blat.proc3825168.chain_3340	3	STRG.10795.1,STRG.10795.2,blat.proc3825168.chain_3338	3
scaffold_28	retained_exon	2642632	2642744	+	asmbl_37390	none	STRG.29439.3,Trinity_GG_33632_c0_g1_i3,blat.proc3825178.chain_2615	3	STRG.29439.1,STRG.29439.2,Trinity_GG_33632_c0_g1_i1,blat.proc3825178.chain_2614,blat.proc3825178.chain_2616	5
scaffold_21	starts_in_intron	2496159	2496159	+	asmbl_28397,asmbl_28398	none	Trinity_GG_30537_c0_g1_i2,Trinity_GG_30537_c0_g1_i3,blat.proc3825176.chain_1079,blat.proc3825176.chain_1081	4	STRG.23878.1,blat.proc3825176.chain_1082	2
scaffold_9	alt_donor	1664895	1664896	-	asmbl_54826	none	STRG.10862.7	1	STRG.10862.5	1
scaffold_2	spliced_intron	15266383	15266469	+	asmbl_24996,asmbl_24997,asmbl_24999,asmbl_25000,asmbl_25001,asmbl_25002,asmbl_25006	none	STRG.2485.1,STRG.2485.2,STRG.2485.3,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2606	9	blat.proc3825164.chain_2607,blat.proc3825164.chain_2608	2
scaffold_2	alt_acceptor	168567	168568	+	asmbl_24079,asmbl_24080,asmbl_24081	none	STRG.1522.1,blat.proc3825164.chain_1668,blat.proc3825164.chain_1669,blat.proc3825164.chain_1671	4	STRG.1522.2	1
scaffold_11	ends_in_intron	7604778	7604778	-	asmbl_6780	none	Trinity_GG_7670_c1_g1_i2,blat.proc3825154.chain_2266	2	blat.proc3825154.chain_2267	1
scaffold_1	spliced_intron	22324113	22324192	-	asmbl_1235	none	STRG.1484.1,Trinity_GG_799_c0_g1_i2,blat.proc3825148.chain_1455	3	Trinity_GG_799_c0_g1_i1,blat.proc3825148.chain_1456	2
scaffold_21	ends_in_intron	3785065	3785065	-	asmbl_27540	none	blat.proc3825160.chain_1065	1	STRG.23969.1,blat.proc3825160.chain_1066	2
scaffold_3	starts_in_intron	8131169	8131169	+	asmbl_40200	none	blat.proc3825164.chain_3595	1	STRG.3396.1,blat.proc3825164.chain_3594	2
scaffold_21	starts_in_intron	27407	27407	-	asmbl_27264	none	Trinity_GG_13205_c0_g1_i3,blat.proc3825160.chain_814	2	STRG.23712.1,Trinity_GG_13205_c0_g1_i1,blat.proc3825160.chain_816	3
scaffold_19	starts_in_intron	9171575	9171575	+	asmbl_21572	none	Trinity_GG_29633_c1_g1_i1,blat.proc3825174.chain_3306	2	STRG.22352.1	1
scaffold_14	alternate_exon	14106644	14106847	-	asmbl_13679	none	STRG.17678.3	1	STRG.17678.2	1
scaffold_18	alternate_exon	1513199	1513420	+	asmbl_20361	none	STRG.21044.4	1	STRG.21044.1,STRG.21044.2,STRG.21044.3,blat.proc3825174.chain_1986	4
scaffold_21	alternate_exon	257074	258187	-	asmbl_27291	none	blat.proc3825160.chain_807	1	STRG.23725.4	1
scaffold_14	retained_intron	3165584	3165934	+	asmbl_11907,asmbl_11911	none	STRG.16908.1,STRG.16908.4,blat.proc3825172.chain_1612	3	STRG.16908.3,STRG.16908.5,blat.proc3825172.chain_1613	3
scaffold_5	retained_exon	18391919	18391994	-	asmbl_44836	none	STRG.6974.1	1	STRG.6974.2,blat.proc3825150.chain_3088	2
scaffold_23	retained_exon	10701584	10701642	+	asmbl_31869	none	STRG.26258.1	1	STRG.26258.2	1
scaffold_12	alternate_exon	9229699	9229748	-	asmbl_8658	none	STRG.14924.1,blat.proc3825154.chain_3389	2	STRG.14924.2	1
scaffold_28	alt_acceptor	2684464	2684465	-	asmbl_38076	none	STRG.29448.1,blat.proc3825162.chain_2625	2	STRG.29448.2	1
scaffold_1	alt_acceptor	11680816	11680817	+	asmbl_2130	none	STRG.781.2,blat.proc3825164.chain_848	2	STRG.781.1,blat.proc3825164.chain_849	2
scaffold_9	alternate_exon	11850209	11850474	-	asmbl_55336	none	blat.proc3825152.chain_3715	1	STRG.11503.1,STRG.11503.2,blat.proc3825152.chain_3713,blat.proc3825152.chain_3714,blat.proc3825152.chain_3716	5
scaffold_24	alt_acceptor	4327750	4327751	+	asmbl_32192	none	STRG.26597.2	1	STRG.26597.1	1
scaffold_14	starts_in_intron	8496145	8496145	-	asmbl_13322	none	STRG.17290.1,blat.proc3825156.chain_2111	2	STRG.17290.2,blat.proc3825156.chain_2112	2
scaffold_5	alt_donor	14696723	14696724	+	asmbl_45960	none	STRG.6673.2	1	STRG.6673.1,blat.proc3825166.chain_2841	2
scaffold_11	retained_intron	4744838	4745192	-	asmbl_6625	none	blat.proc3825154.chain_2164	1	STRG.13567.2,blat.proc3825154.chain_2162,blat.proc3825154.chain_2163,blat.proc3825154.chain_2166,blat.proc3825154.chain_2167	5
scaffold_15	spliced_intron	14323219	14323986	-	asmbl_14711	none	Trinity_GG_10597_c0_g1_i8,blat.proc3825156.chain_3715	2	Trinity_GG_10597_c0_g1_i3,Trinity_GG_10597_c0_g1_i4,blat.proc3825156.chain_3718	3
scaffold_25	retained_exon	8270512	8270617	-	asmbl_34427	none	STRG.27658.1,Trinity_GG_15513_c0_g1_i1,blat.proc3825162.chain_1037	3	Trinity_GG_15513_c0_g1_i2,blat.proc3825162.chain_1038	2
scaffold_25	alternate_exon	1903666	1903741	-	asmbl_34055	none	STRG.27201.2	1	STRG.27201.3,STRG.27201.4	2
scaffold_5	spliced_intron	11630266	11630481	-	asmbl_44417	none	blat.proc3825150.chain_2642	1	blat.proc3825150.chain_2638,blat.proc3825150.chain_2639	2
scaffold_12	spliced_intron	16403693	16404417	+	asmbl_8169,asmbl_8171	none	STRG.15402.2,STRG.15402.3,Trinity_GG_25733_c0_g1_i7,blat.proc3825172.chain_45	4	STRG.15402.1,Trinity_GG_25733_c0_g1_i1,blat.proc3825172.chain_43	3
scaffold_14	starts_in_intron	404095	404095	+	asmbl_11752	none	Trinity_GG_26526_c0_g1_i4,blat.proc3825172.chain_1503	2	STRG.16734.1,STRG.16734.2,STRG.16734.3,STRG.16734.4,STRG.16734.5,STRG.16734.6,Trinity_GG_26526_c0_g1_i18,Trinity_GG_26526_c0_g1_i24,blat.proc3825172.chain_1506,blat.proc3825172.chain_1508,blat.proc3825172.chain_1514,blat.proc3825172.chain_1515	12
scaffold_2	retained_intron	5716839	5716996	+	asmbl_24433	none	STRG.1961.3,Trinity_GG_18408_c0_g2_i1,blat.proc3825164.chain_2085	3	STRG.1961.1,STRG.1961.2,blat.proc3825164.chain_2084	3
scaffold_11	alt_acceptor	5125243	5125244	-	asmbl_6655	none	STRG.13605.2,blat.proc3825154.chain_2107	2	STRG.13605.1,blat.proc3825154.chain_2108	2
scaffold_19	alt_acceptor	5994958	5994959	-	asmbl_22186	none	STRG.22136.1,Trinity_GG_12315_c0_g1_i2,blat.proc3825158.chain_2910	3	STRG.22136.2,Trinity_GG_12315_c0_g1_i1,blat.proc3825158.chain_2909	3
scaffold_2	starts_in_intron	1489930	1489930	+	asmbl_24209,asmbl_24210	none	STRG.1622.2,STRG.1622.3	2	STRG.1622.1	1
scaffold_3	spliced_intron	11654136	11654326	+	asmbl_40372,asmbl_40373,asmbl_40374	none	STRG.3605.3,STRG.3605.4,Trinity_GG_19349_c0_g1_i3,blat.proc3825166.chain_119	4	STRG.3605.1,STRG.3605.2,STRG.3605.5,Trinity_GG_19349_c0_g1_i4,Trinity_GG_19349_c0_g1_i6,Trinity_GG_19349_c0_g1_i7,Trinity_GG_19349_c0_g1_i8,blat.proc3825166.chain_121,blat.proc3825166.chain_123,blat.proc3825166.chain_124,blat.proc3825166.chain_125	11
scaffold_11	retained_intron	17375833	17376038	+	asmbl_6222	none	Trinity_GG_25216_c0_g1_i4,blat.proc3825170.chain_2880	2	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2881,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	5
scaffold_13	retained_intron	3734461	3734554	+	asmbl_10732	none	STRG.15695.3,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_444	3	STRG.15695.1,STRG.15695.2,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_448	5
scaffold_5	alternate_exon	15549339	15549985	-	asmbl_44696	none	STRG.6747.1,blat.proc3825150.chain_2941	2	STRG.6747.2,STRG.6747.3	2
scaffold_14	alt_donor	1592566	1592567	-	asmbl_12894,asmbl_12902	none	STRG.16799.2,Trinity_GG_16450_c0_g1_i1,blat.proc3825156.chain_1566	3	STRG.16799.1,STRG.16799.3,STRG.16799.4,Trinity_GG_16450_c0_g1_i2,blat.proc3825156.chain_1564	5
scaffold_24	starts_in_intron	447502	447502	+	asmbl_32018	none	Trinity_GG_31878_c0_g1_i9,blat.proc3825176.chain_3329	2	STRG.26337.1,Trinity_GG_31878_c0_g1_i2,blat.proc3825176.chain_3325,blat.proc3825176.chain_3326	4
scaffold_12	starts_in_intron	6528303	6528303	-	asmbl_8541	none	STRG.14748.1	1	STRG.14748.2,blat.proc3825154.chain_3259,blat.proc3825154.chain_3260	3
scaffold_21	spliced_intron	2516716	2516804	+	asmbl_28400,asmbl_28401	none	STRG.23880.1,blat.proc3825176.chain_1028	2	Trinity_GG_30506_c0_g1_i3,blat.proc3825176.chain_1027	2
scaffold_1	retained_intron	18784825	18784961	-	asmbl_1131	none	STRG.1313.1,blat.proc3825148.chain_1310	2	STRG.1313.2,blat.proc3825148.chain_1309	2
scaffold_19	alternate_exon	2780487	2780543	+	asmbl_21280	none	blat.proc3825174.chain_2998	1	STRG.21962.4,STRG.21962.5	2
scaffold_12	starts_in_intron	14104305	14104305	-	asmbl_8977	none	blat.proc3825156.chain_89	1	STRG.15241.1,Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i4,Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_87,blat.proc3825156.chain_88,blat.proc3825156.chain_91,blat.proc3825156.chain_92,blat.proc3825156.chain_93,blat.proc3825156.chain_94,blat.proc3825156.chain_95,blat.proc3825156.chain_96,blat.proc3825156.chain_97	14
scaffold_17	spliced_intron	9088832	9088926	-	asmbl_18151	none	STRG.20538.4	1	STRG.20538.1,STRG.20538.2,blat.proc3825158.chain_1561	3
scaffold_16	retained_intron	2172434	2173338	+	asmbl_16111,asmbl_16114	none	STRG.19116.1,Trinity_GG_27764_c0_g1_i6,blat.proc3825172.chain_3723,blat.proc3825172.chain_3724	4	blat.proc3825172.chain_3727	1
scaffold_4	retained_intron	13762015	13762163	-	asmbl_43006	none	blat.proc3825150.chain_1142	1	STRG.4997.1,STRG.4997.2,STRG.4997.3,blat.proc3825150.chain_1141,blat.proc3825150.chain_1143,blat.proc3825150.chain_1144	6
scaffold_18	alternate_exon	13463805	13463896	+	asmbl_21023,asmbl_21024	none	blat.proc3825174.chain_2819,blat.proc3825174.chain_2820	2	Trinity_GG_29359_c1_g1_i3,blat.proc3825174.chain_2818	2
scaffold_6	spliced_intron	12554228	12554438	-	asmbl_48825,asmbl_48826,asmbl_48827,asmbl_48828,asmbl_48829	none	STRG.8017.1,STRG.8017.2,STRG.8017.3,blat.proc3825152.chain_421,blat.proc3825152.chain_423	5	blat.proc3825152.chain_427	1
scaffold_27	starts_in_intron	9097054	9097054	-	asmbl_37126	none	blat.proc3825162.chain_2297	1	STRG.29162.2,blat.proc3825162.chain_2296	2
scaffold_1	spliced_intron	20341539	20341565	+	asmbl_2616	none	STRG.1396.4	1	blat.proc3825164.chain_1589,blat.proc3825164.chain_1590	2
scaffold_9	retained_intron	9597034	9597966	-	asmbl_55209,asmbl_55210	none	STRG.11329.2,STRG.11329.3,blat.proc3825152.chain_3514	3	STRG.11329.1,blat.proc3825152.chain_3513	2
scaffold_3	alternate_exon	11639032	11642738	+	asmbl_40363	none	STRG.3596.1,blat.proc3825166.chain_110	2	STRG.3596.2	1
scaffold_6	retained_intron	7937253	7938427	-	asmbl_48510,asmbl_48513,asmbl_48514	none	STRG.7676.1,blat.proc3825152.chain_71,blat.proc3825152.chain_72,blat.proc3825152.chain_73	4	STRG.7676.2,STRG.7676.3,blat.proc3825152.chain_69,blat.proc3825152.chain_70	4
scaffold_24	spliced_intron	8747124	8747465	+	asmbl_32443	none	STRG.26888.3	1	STRG.26888.2,Trinity_GG_32167_c0_g2_i1,blat.proc3825178.chain_76	3
scaffold_9	spliced_intron	9644933	9645015	+	asmbl_54213	none	STRG.11334.1,Trinity_GG_23627_c0_g1_i1,blat.proc3825170.chain_114	3	STRG.11334.2	1
scaffold_18	starts_in_intron	8594672	8594672	+	asmbl_20847	none	blat.proc3825174.chain_2587	1	STRG.21525.2	1
scaffold_12	alt_acceptor	976469	976470	-	asmbl_8282,asmbl_8283,asmbl_8285	none	STRG.14442.1,STRG.14442.2,STRG.14442.3,blat.proc3825154.chain_2955,blat.proc3825154.chain_2956,blat.proc3825154.chain_2958	6	STRG.14442.4	1
scaffold_1	starts_in_intron	103170	103170	+	asmbl_1396	none	Trinity_GG_17334_c0_g1_i2,blat.proc3825164.chain_105	2	STRG.12.1,blat.proc3825164.chain_106,blat.proc3825164.chain_107,blat.proc3825164.chain_108,blat.proc3825164.chain_109	5
scaffold_17	retained_intron	3142038	3142233	-	asmbl_17802,asmbl_17803	none	STRG.20097.2,Trinity_GG_11267_c0_g1_i3	2	STRG.20097.1,blat.proc3825158.chain_1116	2
scaffold_1	alternate_exon	20733469	20733619	-	asmbl_1198	none	STRG.1417.2,blat.proc3825148.chain_1393	2	STRG.1417.1,blat.proc3825148.chain_1394	2
scaffold_9	skipped_exon	16558842	16561320	-	asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55590,asmbl_55591	none	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_274	7	STRG.11806.5	1
scaffold_6	starts_in_intron	13355815	13355815	-	asmbl_48911	none	blat.proc3825152.chain_506	1	STRG.8094.1,STRG.8094.2,blat.proc3825152.chain_508,blat.proc3825152.chain_509,blat.proc3825152.chain_510	5
scaffold_14	alt_acceptor	3154560	3154561	+	asmbl_11911,asmbl_11912,asmbl_11913,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11921,asmbl_11922,asmbl_11923,asmbl_11924	none	STRG.16908.1,STRG.16908.2,Trinity_GG_26576_c0_g1_i11,Trinity_GG_26576_c0_g1_i12,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1601,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1605,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1609,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	20	STRG.16908.3	1
scaffold_6	retained_exon	18916805	18916886	-	asmbl_49290,asmbl_49291	none	STRG.8561.2,STRG.8561.3	2	STRG.8561.1,blat.proc3825152.chain_1002,blat.proc3825152.chain_1003	3
scaffold_18	spliced_intron	3789471	3789712	-	asmbl_19777,asmbl_19779	none	STRG.21197.2,blat.proc3825158.chain_2176	2	STRG.21197.1,STRG.21197.3,blat.proc3825158.chain_2171,blat.proc3825158.chain_2173,blat.proc3825158.chain_2177,blat.proc3825158.chain_2178,blat.proc3825158.chain_2179	7
scaffold_16	skipped_exon	10976248	10977481	-	asmbl_17322	none	blat.proc3825158.chain_661	1	STRG.19645.1,STRG.19645.2,blat.proc3825158.chain_660	3
scaffold_18	starts_in_intron	202828	202828	+	asmbl_20277,asmbl_20278	none	blat.proc3825174.chain_1917,blat.proc3825174.chain_1918	2	STRG.20974.1,STRG.20974.2,STRG.20974.3,blat.proc3825174.chain_1920,blat.proc3825174.chain_1921	5
scaffold_14	alt_acceptor	15724459	15724460	-	asmbl_13743	none	STRG.17813.3	1	STRG.17813.1,STRG.17813.2,blat.proc3825156.chain_2625	3
scaffold_6	alt_acceptor	19111185	19111186	+	asmbl_47876,asmbl_47877	none	STRG.8584.1,STRG.8584.2,Trinity_GG_22000_c0_g1_i2,Trinity_GG_22000_c0_g1_i3,blat.proc3825168.chain_988,blat.proc3825168.chain_989	6	STRG.8584.3	1
scaffold_25	retained_exon	5619083	5619182	-	asmbl_34268	none	STRG.27459.2,blat.proc3825162.chain_827	2	STRG.27459.1	1
scaffold_5	alt_donor	5729856	5729857	+	asmbl_45357	none	STRG.5990.1,blat.proc3825166.chain_2117,blat.proc3825166.chain_2118	3	STRG.5990.2	1
scaffold_7	starts_in_intron	15270513	15270513	+	asmbl_50435	none	blat.proc3825168.chain_2126	1	STRG.9546.1,STRG.9546.2,STRG.9546.3,STRG.9546.4,blat.proc3825168.chain_2120,blat.proc3825168.chain_2121,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2125	9
scaffold_15	spliced_intron	11941297	11941598	-	asmbl_14539	none	STRG.18636.1,blat.proc3825156.chain_3459	2	blat.proc3825156.chain_3462	1
scaffold_1	spliced_intron	15880705	15881317	+	asmbl_2451	none	STRG.1114.1,blat.proc3825164.chain_1298	2	Trinity_GG_17990_c0_g1_i1,blat.proc3825164.chain_1297	2
scaffold_3	skipped_exon	1839647	1840955	+	asmbl_39891	none	STRG.3005.2	1	STRG.3005.1,blat.proc3825164.chain_3256	2
scaffold_20	skipped_exon	10132449	10132774	+	asmbl_26937	none	STRG.23557.2	1	blat.proc3825176.chain_727	1
scaffold_2	spliced_intron	8062385	8062907	+	asmbl_24609	none	STRG.2102.1,blat.proc3825164.chain_2261	2	Trinity_GG_18492_c1_g1_i1,blat.proc3825164.chain_2262	2
scaffold_23	starts_in_intron	2200958	2200958	-	asmbl_30707	none	blat.proc3825160.chain_2816	1	STRG.25691.3	1
scaffold_8	starts_in_intron	9373233	9373233	-	asmbl_52031	none	blat.proc3825152.chain_2462	1	STRG.10202.3,STRG.10202.4,STRG.10202.5,STRG.10202.6,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463,blat.proc3825152.chain_2464	7
scaffold_15	alt_donor	11399371	11399372	-	asmbl_14493,asmbl_14494,asmbl_14495,asmbl_14496,asmbl_14497	none	STRG.18606.1,STRG.18606.2,STRG.18606.3,STRG.18606.5,STRG.18606.6,blat.proc3825156.chain_3363,blat.proc3825156.chain_3365,blat.proc3825156.chain_3366	8	STRG.18606.4,blat.proc3825156.chain_3364	2
scaffold_22	ends_in_intron	7889092	7889092	+	asmbl_30229	none	blat.proc3825176.chain_2266	1	STRG.25145.2,Trinity_GG_31232_c0_g1_i1,blat.proc3825176.chain_2265	3
scaffold_3	alt_acceptor	1448381	1448382	+	asmbl_39847	none	STRG.2964.1,blat.proc3825164.chain_3191	2	blat.proc3825164.chain_3190	1
scaffold_10	starts_in_intron	10800856	10800856	+	asmbl_3438,asmbl_3439	none	STRG.12766.2,blat.proc3825170.chain_1374	2	STRG.12766.1,blat.proc3825170.chain_1372,blat.proc3825170.chain_1373	3
scaffold_15	alt_acceptor	15414285	15414286	+	asmbl_15779,asmbl_15780,asmbl_15782,asmbl_15783	none	STRG.18953.4,blat.proc3825172.chain_3608,blat.proc3825172.chain_3609,blat.proc3825172.chain_3612	4	STRG.18953.1,STRG.18953.5,STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3607,blat.proc3825172.chain_3610,blat.proc3825172.chain_3611	7
scaffold_18	alt_donor	4849093	4849094	+	asmbl_20567	none	STRG.21278.2,Trinity_GG_28997_c0_g1_i1,blat.proc3825174.chain_2171	3	STRG.21278.3,Trinity_GG_28997_c0_g1_i5,blat.proc3825174.chain_2169	3
scaffold_24	alternate_exon	4319255	4319531	+	asmbl_32190,asmbl_32191	none	Trinity_GG_31987_c0_g1_i1,Trinity_GG_31987_c0_g1_i2,blat.proc3825176.chain_3494,blat.proc3825176.chain_3495	4	STRG.26600.2	1
scaffold_12	alternate_exon	7618895	7619017	-	asmbl_8603,asmbl_8605,asmbl_8606,asmbl_8609	none	STRG.14840.1,STRG.14840.2,STRG.14840.3,STRG.14840.4,blat.proc3825154.chain_3358	5	STRG.14840.5,STRG.14840.6,blat.proc3825154.chain_3359	3
scaffold_3	alt_acceptor	1032794	1032795	+	asmbl_39824	none	STRG.2927.2	1	STRG.2927.1,blat.proc3825164.chain_3178	2
scaffold_6	alternate_exon	16605135	16606264	+	asmbl_47705	none	STRG.8386.3,blat.proc3825168.chain_828,blat.proc3825168.chain_830	3	STRG.8386.2	1
scaffold_3	alternate_exon	6184449	6189687	-	asmbl_38911	none	STRG.3266.4	1	STRG.3266.3,blat.proc3825148.chain_3118	2
scaffold_7	starts_in_intron	12370477	12370477	+	asmbl_50255	none	blat.proc3825168.chain_1874	1	STRG.9336.1,blat.proc3825168.chain_1875,blat.proc3825168.chain_1877,blat.proc3825168.chain_1878,blat.proc3825168.chain_1879	5
scaffold_10	starts_in_intron	3802994	3802994	+	asmbl_3076	none	Trinity_GG_24095_c0_g1_i1	1	STRG.12224.1	1
scaffold_12	retained_exon	7542623	7542703	-	asmbl_8594,asmbl_8595	none	STRG.14835.1,STRG.14835.2,blat.proc3825154.chain_3373,blat.proc3825154.chain_3375	4	STRG.14835.3,blat.proc3825154.chain_3374	2
scaffold_14	retained_intron	12351231	12351424	+	asmbl_12426	none	blat.proc3825172.chain_2272	1	STRG.17576.1,STRG.17576.2,blat.proc3825172.chain_2273	3
scaffold_3	alt_acceptor	14764542	14764543	-	asmbl_39415,asmbl_39417	none	STRG.3820.2,STRG.3820.4,Trinity_GG_2082_c0_g1_i3,blat.proc3825148.chain_3685	4	STRG.3820.3,Trinity_GG_2082_c0_g1_i2,blat.proc3825148.chain_3684	3
scaffold_14	ends_in_intron	12122654	12122654	-	asmbl_13550	none	STRG.17543.2	1	STRG.17543.1	1
scaffold_24	alt_donor	278080	278081	-	asmbl_32701	none	STRG.26327.1,Trinity_GG_14724_c0_g1_i1,blat.proc3825160.chain_3465	3	STRG.26327.2	1
scaffold_19	spliced_intron	13003307	13003408	+	asmbl_21835,asmbl_21836,asmbl_21844	none	STRG.22623.1,STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i13,Trinity_GG_29821_c0_g1_i5,blat.proc3825174.chain_3643,blat.proc3825174.chain_3646,blat.proc3825174.chain_3651	8	Trinity_GG_29821_c0_g1_i10,blat.proc3825174.chain_3645	2
scaffold_15	retained_intron	13759939	13760410	-	asmbl_14662	none	STRG.18808.2,Trinity_GG_10569_c0_g1_i2,blat.proc3825156.chain_3661	3	STRG.18808.4,blat.proc3825156.chain_3663	2
scaffold_8	skipped_exon	11269758	11270824	-	asmbl_52140	none	STRG.10337.2,blat.proc3825152.chain_2579	2	STRG.10337.1,STRG.10337.3,blat.proc3825152.chain_2577	3
scaffold_8	retained_intron	9885234	9885406	+	asmbl_53132	none	blat.proc3825168.chain_2805	1	STRG.10237.1,Trinity_GG_23010_c0_g1_i1,blat.proc3825168.chain_2806	3
scaffold_12	alternate_exon	7413134	7413356	-	asmbl_8580	none	STRG.14824.1,blat.proc3825154.chain_3313	2	STRG.14824.3,blat.proc3825154.chain_3314	2
scaffold_5	ends_in_intron	15519826	15519826	-	asmbl_44687,asmbl_44688	none	blat.proc3825150.chain_2943,blat.proc3825150.chain_2946	2	STRG.6745.1,STRG.6745.2,blat.proc3825150.chain_2945	3
scaffold_14	starts_in_intron	7485018	7485018	-	asmbl_13213	none	STRG.17191.1,Trinity_GG_9624_c0_g1_i2,blat.proc3825156.chain_1978	3	STRG.17191.2,Trinity_GG_9624_c0_g1_i1,blat.proc3825156.chain_1977	3
scaffold_2	alternate_exon	14133107	14133149	-	asmbl_23562	none	STRG.2408.3	1	STRG.2408.1,blat.proc3825148.chain_2401,blat.proc3825148.chain_2402,blat.proc3825148.chain_2403	4
scaffold_26	retained_intron	9420301	9420411	-	asmbl_35778	none	Trinity_GG_15932_c0_g1_i1,blat.proc3825162.chain_1689	2	STRG.28493.1	1
scaffold_111	retained_exon	7050	7115	+	asmbl_7392	none	STRG.30157.1,Trinity_GG_34009_c2_g1_i2,blat.proc3825178.chain_3273	3	Trinity_GG_34009_c2_g1_i1,blat.proc3825162.chain_3488,blat.proc3825178.chain_3274	3
scaffold_4	alt_donor	14571069	14571070	+	asmbl_41888	none	STRG.5073.2,blat.proc3825166.chain_1431	2	STRG.5073.1,blat.proc3825166.chain_1432	2
scaffold_4	spliced_intron	17537231	17537656	+	asmbl_42051	none	STRG.5339.1,blat.proc3825166.chain_1713	2	blat.proc3825166.chain_1714	1
scaffold_1	retained_intron	5543912	5544420	-	asmbl_273	none	STRG.347.2,blat.proc3825148.chain_317	2	STRG.347.1,STRG.347.3	2
scaffold_56	spliced_intron	4308	4486	-	asmbl_46566	none	STRG.30073.2	1	STRG.30073.1	1
scaffold_4	ends_in_intron	19522058	19522058	-	asmbl_43445	none	blat.proc3825150.chain_1645	1	STRG.5538.1,blat.proc3825150.chain_1642,blat.proc3825150.chain_1643,blat.proc3825150.chain_1644	4
scaffold_13	starts_in_intron	1218951	1218951	+	asmbl_10544	none	blat.proc3825172.chain_282	1	STRG.15493.1,blat.proc3825172.chain_281	2
scaffold_1	ends_in_intron	14618880	14618880	+	asmbl_2407	none	blat.proc3825164.chain_1144	1	STRG.1072.1,STRG.1072.2,blat.proc3825164.chain_1142	3
scaffold_21	ends_in_intron	10498212	10498212	-	asmbl_28051	none	blat.proc3825160.chain_1744	1	STRG.24519.1,STRG.24519.2,blat.proc3825160.chain_1740,blat.proc3825160.chain_1741,blat.proc3825160.chain_1742,blat.proc3825160.chain_1743,blat.proc3825160.chain_1745	7
scaffold_14	retained_exon	14148818	14148881	+	asmbl_12525	none	STRG.17687.1	1	STRG.17687.3	1
scaffold_9	retained_exon	4899092	4899133	+	asmbl_53967	none	blat.proc3825168.chain_3562	1	STRG.11064.1,STRG.11064.2	2
scaffold_4	spliced_intron	5832068	5832537	+	asmbl_41372	none	STRG.4475.2	1	STRG.4475.1,STRG.4475.3	2
scaffold_20	alt_acceptor	10132770	10132771	+	asmbl_26936	none	blat.proc3825176.chain_727	1	STRG.23557.2	1
scaffold_17	alt_acceptor	13083980	13083981	+	asmbl_19312	none	blat.proc3825174.chain_1718,blat.proc3825174.chain_1725	2	STRG.20804.1,blat.proc3825174.chain_1721,blat.proc3825174.chain_1722,blat.proc3825174.chain_1726,blat.proc3825174.chain_1727	5
scaffold_2	ends_in_intron	15286709	15286709	+	asmbl_25021,asmbl_25022	none	STRG.2481.2,blat.proc3825164.chain_2745,blat.proc3825164.chain_2746	3	STRG.2481.1	1
scaffold_3	retained_exon	14513671	14513808	-	asmbl_39386	none	STRG.3791.2	1	STRG.3791.1	1
scaffold_22	alt_acceptor	7901739	7901740	-	asmbl_29443	none	STRG.25136.1	1	STRG.25136.3	1
scaffold_7	spliced_intron	6042675	6043363	-	asmbl_50910,asmbl_50911	none	STRG.8910.2,STRG.8910.3,blat.proc3825152.chain_1341,blat.proc3825152.chain_1344	4	STRG.8910.1,Trinity_GG_5061_c0_g1_i13,Trinity_GG_5061_c0_g1_i3,Trinity_GG_5061_c0_g1_i4,Trinity_GG_5061_c0_g1_i9,blat.proc3825152.chain_1343,blat.proc3825152.chain_1346,blat.proc3825152.chain_1347,blat.proc3825152.chain_1348	9
scaffold_13	retained_exon	7504556	7504603	-	asmbl_9884,asmbl_9885,asmbl_9886,asmbl_9890,asmbl_9891,asmbl_9893,asmbl_9894	none	STRG.16047.1,STRG.16047.2,STRG.16047.3,blat.proc3825156.chain_899,blat.proc3825156.chain_900,blat.proc3825156.chain_901,blat.proc3825156.chain_903,blat.proc3825156.chain_905,blat.proc3825156.chain_906,blat.proc3825156.chain_908	10	blat.proc3825156.chain_904,blat.proc3825156.chain_909	2
scaffold_10	alt_acceptor	10098113	10098114	-	asmbl_4708	none	Trinity_GG_7109_c0_g1_i2,blat.proc3825154.chain_1323	2	STRG.12714.1,Trinity_GG_7109_c0_g1_i1,blat.proc3825154.chain_1324	3
scaffold_11	alt_donor	3698054	3698055	+	asmbl_5456	none	STRG.13489.1,blat.proc3825170.chain_1994	2	STRG.13489.2	1
scaffold_9	ends_in_intron	3674519	3674519	-	asmbl_54923	none	Trinity_GG_6077_c0_g2_i1	1	Trinity_GG_6077_c0_g2_i2	1
scaffold_4	spliced_intron	15296018	15296103	+	asmbl_41942	none	STRG.5125.2	1	STRG.5125.3,Trinity_GG_20176_c0_g1_i2,blat.proc3825166.chain_1526	3
scaffold_17	spliced_intron	6808283	6808729	+	asmbl_18877	none	STRG.20335.1,Trinity_GG_28412_c1_g1_i1,blat.proc3825174.chain_1113	3	STRG.20335.2,Trinity_GG_28412_c2_g1_i1,blat.proc3825174.chain_1114	3
scaffold_11	retained_exon	11943840	11944315	-	asmbl_7044,asmbl_7052	none	STRG.14177.4,blat.proc3825154.chain_2596	2	STRG.14177.6	1
scaffold_10	starts_in_intron	3352880	3352880	-	asmbl_4194	none	Trinity_GG_6758_c0_g1_i3,blat.proc3825154.chain_686	2	STRG.12167.1,blat.proc3825154.chain_689	2
scaffold_4	alt_donor	17419156	17419157	-	asmbl_43263	none	STRG.5328.1	1	STRG.5328.2,STRG.5328.4,Trinity_GG_2975_c0_g1_i1,blat.proc3825150.chain_1501	4
scaffold_12	spliced_intron	14989527	14989688	-	asmbl_9024	none	STRG.15298.3,Trinity_GG_8566_c0_g1_i2,blat.proc3825156.chain_116	3	Trinity_GG_8566_c0_g1_i6,blat.proc3825156.chain_115	2
scaffold_14	retained_intron	583074	583762	+	asmbl_11767,asmbl_11773	none	STRG.16740.1,STRG.16740.4,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	4	STRG.16740.3	1
scaffold_22	starts_in_intron	5984819	5984819	-	asmbl_29302	none	STRG.24948.4	1	STRG.24948.2,STRG.24948.3	2
scaffold_14	retained_intron	9475503	9475665	+	asmbl_12284,asmbl_12285	none	STRG.17340.1,STRG.17340.3,Trinity_GG_26857_c0_g1_i1,Trinity_GG_26857_c0_g1_i2,blat.proc3825172.chain_2107,blat.proc3825172.chain_2108	6	STRG.17340.2	1
scaffold_13	alt_donor	382052	382053	-	asmbl_9323,asmbl_9326	none	STRG.15437.1,STRG.15437.3,blat.proc3825156.chain_263	3	STRG.15437.4,blat.proc3825156.chain_262	2
scaffold_19	retained_exon	13268055	13268107	-	asmbl_22636	none	STRG.22648.1,blat.proc3825158.chain_3490	2	STRG.22648.2,blat.proc3825158.chain_3489	2
scaffold_22	alternate_exon	4879424	4883289	-	asmbl_29279,asmbl_29281	none	STRG.24908.2,STRG.24908.3,blat.proc3825160.chain_2012,blat.proc3825160.chain_2014	4	STRG.24908.1,blat.proc3825160.chain_2013	2
scaffold_23	spliced_intron	2608885	2609300	-	asmbl_30752,asmbl_30755,asmbl_30756	none	STRG.25729.1,blat.proc3825160.chain_2924,blat.proc3825160.chain_2925,blat.proc3825160.chain_2926	4	blat.proc3825160.chain_2923	1
scaffold_18	retained_intron	8863627	8864527	-	asmbl_20026	none	Trinity_GG_11998_c0_g1_i1,blat.proc3825158.chain_2353	2	STRG.21549.1,STRG.21549.2,blat.proc3825158.chain_2354,blat.proc3825158.chain_2355,blat.proc3825158.chain_2358,blat.proc3825158.chain_2359,blat.proc3825158.chain_2360,blat.proc3825158.chain_2361,blat.proc3825158.chain_2362	9
scaffold_8	starts_in_intron	10485133	10485133	+	asmbl_53173	none	Trinity_GG_23049_c0_g1_i1,blat.proc3825168.chain_2871	2	STRG.10286.1,STRG.10286.2,blat.proc3825168.chain_2872,blat.proc3825168.chain_2873,blat.proc3825168.chain_2874	5
scaffold_27	ends_in_intron	318122	318122	-	asmbl_36664	none	STRG.28557.5	1	STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725	4
scaffold_28	ends_in_intron	7241738	7241738	+	asmbl_37651	none	blat.proc3825178.chain_2937	1	STRG.29790.1,blat.proc3825178.chain_2938	2
scaffold_25	spliced_intron	6324446	6324641	-	asmbl_34356,asmbl_34357,asmbl_34359,asmbl_34360	none	STRG.27519.1,STRG.27519.2,blat.proc3825162.chain_938,blat.proc3825162.chain_940,blat.proc3825162.chain_942,blat.proc3825162.chain_943	6	blat.proc3825162.chain_939,blat.proc3825162.chain_941	2
scaffold_7	retained_intron	3953206	3953955	-	asmbl_50832,asmbl_50833,asmbl_50834,asmbl_50835,asmbl_50836,asmbl_50837,asmbl_50838,asmbl_50839	none	blat.proc3825152.chain_1226,blat.proc3825152.chain_1227,blat.proc3825152.chain_1229,blat.proc3825152.chain_1230,blat.proc3825152.chain_1231,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235,blat.proc3825152.chain_1236	8	STRG.8794.1,STRG.8794.2,Trinity_GG_4999_c0_g1_i6,blat.proc3825152.chain_1228,blat.proc3825152.chain_1232,blat.proc3825152.chain_1234	6
scaffold_24	retained_intron	879746	879842	+	asmbl_32053	none	STRG.26371.1,blat.proc3825176.chain_3378	2	STRG.26371.2	1
scaffold_18	alternate_exon	4762387	4769669	+	asmbl_20559	none	STRG.21273.2	1	Trinity_GG_29026_c1_g1_i2,blat.proc3825174.chain_2229	2
scaffold_15	retained_exon	8986430	8986483	+	asmbl_15372	none	STRG.18445.1,blat.proc3825172.chain_3138	2	STRG.18445.2,blat.proc3825172.chain_3139	2
scaffold_18	spliced_intron	236302	236439	-	asmbl_19568,asmbl_19569	none	STRG.20979.1,blat.proc3825158.chain_1925,blat.proc3825158.chain_1926	3	STRG.20979.2,STRG.20979.3,blat.proc3825158.chain_1923	3
scaffold_5	starts_in_intron	9735343	9735343	-	asmbl_44303	none	blat.proc3825150.chain_2487	1	STRG.6295.1,blat.proc3825150.chain_2486	2
scaffold_6	spliced_intron	8581614	8581696	+	asmbl_47152,asmbl_47156	none	STRG.7738.3,STRG.7738.4	2	STRG.7738.2,blat.proc3825168.chain_176	2
scaffold_4	ends_in_intron	12380820	12380820	-	asmbl_42910	none	Trinity_GG_2716_c0_g1_i2,blat.proc3825150.chain_1059	2	STRG.4873.1,STRG.4873.2,blat.proc3825150.chain_1058	3
scaffold_14	alternate_exon	14764657	14764751	+	asmbl_12561	none	STRG.17739.2,Trinity_GG_27026_c0_g1_i2,blat.proc3825172.chain_2403	3	STRG.17739.1,Trinity_GG_27026_c0_g1_i1,blat.proc3825172.chain_2404	3
scaffold_26	retained_intron	3790895	3791028	+	asmbl_34836,asmbl_34837	none	blat.proc3825178.chain_1150,blat.proc3825178.chain_1153	2	STRG.28068.3,blat.proc3825178.chain_1145	2
scaffold_9	alt_acceptor	11889194	11889195	+	asmbl_54393,asmbl_54394	none	STRG.11516.1,STRG.11516.2	2	blat.proc3825170.chain_339	1
scaffold_4	ends_in_intron	12341688	12341688	-	asmbl_42902	none	blat.proc3825150.chain_1056	1	STRG.4868.1,STRG.4868.2,blat.proc3825150.chain_1054	3
scaffold_28	spliced_intron	2404241	2404447	+	asmbl_37364	none	STRG.29414.2,blat.proc3825178.chain_2580	2	STRG.29414.1,STRG.29414.3,STRG.29414.4,blat.proc3825178.chain_2579,blat.proc3825178.chain_2581,blat.proc3825178.chain_2582	6
scaffold_7	retained_intron	5916762	5917155	-	asmbl_50903,asmbl_50904	none	blat.proc3825152.chain_1286,blat.proc3825152.chain_1288	2	STRG.8897.2,blat.proc3825152.chain_1284	2
scaffold_18	alternate_exon	4762379	4768248	+	asmbl_20554	none	STRG.21273.3,Trinity_GG_29026_c1_g1_i4,blat.proc3825174.chain_2228	3	Trinity_GG_29026_c1_g1_i2,blat.proc3825174.chain_2229	2
scaffold_4	starts_in_intron	18916223	18916223	+	asmbl_42115	none	STRG.5469.2	1	STRG.5469.1,blat.proc3825166.chain_1767	2
scaffold_24	spliced_intron	6311156	6311448	+	asmbl_32302,asmbl_32303,asmbl_32305	none	STRG.26696.1,STRG.26696.2,blat.proc3825176.chain_3579,blat.proc3825176.chain_3580	4	blat.proc3825176.chain_3581	1
scaffold_17	starts_in_intron	2537067	2537067	-	asmbl_17757	none	STRG.20049.2,blat.proc3825158.chain_1073	2	STRG.20049.1,STRG.20049.3,blat.proc3825158.chain_1071,blat.proc3825158.chain_1072	4
scaffold_2	alternate_exon	2881502	2881925	-	asmbl_22937	none	blat.proc3825148.chain_1666	1	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1667,blat.proc3825148.chain_1671,blat.proc3825148.chain_1672	5
scaffold_8	skipped_exon	17311618	17313674	-	asmbl_52443	none	STRG.10653.2,blat.proc3825152.chain_2900	2	STRG.10653.4,blat.proc3825152.chain_2902	2
scaffold_17	spliced_intron	8540373	8540456	+	asmbl_18993	none	STRG.20467.2	1	STRG.20467.1,blat.proc3825174.chain_1315	2
scaffold_27	alt_donor	1109217	1109218	+	asmbl_35997	none	STRG.28611.2	1	STRG.28611.1,Trinity_GG_33154_c0_g1_i1,blat.proc3825178.chain_1758	3
scaffold_27	spliced_intron	157697	157951	-	asmbl_36650	none	STRG.28549.1,blat.proc3825162.chain_1774	2	STRG.28549.2,STRG.28549.3,Trinity_GG_15970_c0_g1_i3,blat.proc3825162.chain_1775	4
scaffold_25	alt_donor	7323967	7323968	-	asmbl_34395	none	STRG.27581.4	1	STRG.27581.1,STRG.27581.2,blat.proc3825178.chain_653	3
scaffold_7	spliced_intron	9311935	9312011	+	asmbl_50074,asmbl_50075,asmbl_50076	none	STRG.9144.1,Trinity_GG_22395_c0_g1_i2,Trinity_GG_22395_c0_g1_i3,Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669,blat.proc3825168.chain_1670,blat.proc3825168.chain_1671	7	Trinity_GG_22395_c0_g1_i1,blat.proc3825168.chain_1672	2
scaffold_13	alt_acceptor	2653343	2653344	-	asmbl_9467,asmbl_9470,asmbl_9471	none	STRG.15580.1,blat.proc3825156.chain_376,blat.proc3825156.chain_377,blat.proc3825156.chain_378	4	Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_380	2
scaffold_5	alt_donor	4718667	4718668	+	asmbl_45293	none	STRG.5927.2	1	STRG.5927.1,blat.proc3825166.chain_2154	2
scaffold_3	starts_in_intron	11326642	11326642	-	asmbl_39150	none	Trinity_GG_1936_c0_g1_i1	1	STRG.3562.1,Trinity_GG_1936_c0_g1_i2,blat.proc3825148.chain_3437	3
scaffold_6	spliced_intron	5197857	5197979	+	asmbl_46916,asmbl_46917,asmbl_46918,asmbl_46920,asmbl_46921,asmbl_46924	none	STRG.7496.1,STRG.7496.2,STRG.7496.5,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i3,Trinity_GG_21344_c0_g1_i6,blat.proc3825166.chain_3548,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3555	11	STRG.7496.6,Trinity_GG_21344_c0_g1_i16,blat.proc3825166.chain_3547,blat.proc3825166.chain_3554,blat.proc3825166.chain_3556	5
scaffold_7	alt_acceptor	12368361	12368362	+	asmbl_50247,asmbl_50251,asmbl_50253	none	STRG.9336.1,blat.proc3825168.chain_1875,blat.proc3825168.chain_1878,blat.proc3825168.chain_1880	4	blat.proc3825168.chain_1877	1
scaffold_15	starts_in_intron	14325526	14325526	-	asmbl_14712	none	Trinity_GG_10597_c0_g1_i4	1	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2
scaffold_1	starts_in_intron	12756558	12756558	-	asmbl_757	none	Trinity_GG_445_c0_g2_i1,blat.proc3825148.chain_847	2	STRG.897.1,blat.proc3825148.chain_843	2
scaffold_6	alt_acceptor	17523319	17523320	+	asmbl_47762	none	STRG.8455.1,blat.proc3825168.chain_892	2	STRG.8455.3	1
scaffold_3	spliced_intron	13800170	13800928	-	asmbl_39302,asmbl_39303,asmbl_39305	none	STRG.3726.1,STRG.3726.2,Trinity_GG_2036_c0_g1_i4,blat.proc3825148.chain_3595,blat.proc3825148.chain_3596	5	Trinity_GG_2036_c0_g1_i1,blat.proc3825148.chain_3594	2
scaffold_3	skipped_exon	19407196	19407789	-	asmbl_39650,asmbl_39653	none	STRG.4086.5,blat.proc3825150.chain_252	2	STRG.4086.1,STRG.4086.2,STRG.4086.3,STRG.4086.4,blat.proc3825150.chain_250,blat.proc3825150.chain_253	6
scaffold_2	alternate_exon	7216791	7217129	+	asmbl_24541	none	STRG.2054.4,Trinity_GG_18495_c0_g1_i3,blat.proc3825164.chain_2271	3	STRG.2054.3,Trinity_GG_18495_c0_g1_i5,Trinity_GG_18495_c0_g1_i8,blat.proc3825164.chain_2272,blat.proc3825164.chain_2273	5
scaffold_19	starts_in_intron	13161747	13161747	+	asmbl_21861	none	blat.proc3825174.chain_3673	1	STRG.22640.1,STRG.22640.2,blat.proc3825174.chain_3672	3
scaffold_13	alternate_exon	366022	366456	-	asmbl_9312	none	Trinity_GG_8663_c0_g1_i21,blat.proc3825156.chain_298	2	STRG.15442.2,Trinity_GG_8663_c0_g1_i17,blat.proc3825156.chain_296	3
scaffold_20	starts_in_intron	5948891	5948891	-	asmbl_25803	none	blat.proc3825160.chain_294	1	STRG.23205.1,blat.proc3825160.chain_292,blat.proc3825160.chain_293	3
scaffold_26	spliced_intron	902781	902905	+	asmbl_34710	none	STRG.27895.1,blat.proc3825178.chain_907	2	Trinity_GG_32665_c0_g1_i1,blat.proc3825178.chain_906	2
scaffold_26	alt_donor	7519025	7519026	+	asmbl_35122	none	STRG.28382.2	1	STRG.28382.1,blat.proc3825178.chain_1465	2
scaffold_10	starts_in_intron	3787047	3787047	+	asmbl_3073	none	Trinity_GG_24099_c1_g1_i1,blat.proc3825170.chain_940	2	STRG.12211.2	1
scaffold_15	alt_donor	11142184	11142185	-	asmbl_14482	none	blat.proc3825156.chain_3380	1	blat.proc3825156.chain_3382,blat.proc3825156.chain_3383,blat.proc3825156.chain_3384,blat.proc3825156.chain_3386	4
scaffold_7	alternate_exon	4931375	4933149	+	asmbl_49779	none	blat.proc3825168.chain_1351	1	STRG.8852.1,STRG.8852.3,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1348,blat.proc3825168.chain_1352	7
scaffold_1	starts_in_intron	5705172	5705172	+	asmbl_1757	none	blat.proc3825164.chain_497	1	STRG.372.1,blat.proc3825164.chain_496,blat.proc3825164.chain_498,blat.proc3825164.chain_500	4
scaffold_5	alt_donor	13299964	13299965	+	asmbl_45877	none	STRG.6578.2	1	STRG.6578.1	1
scaffold_2	alt_donor	18914581	18914582	-	asmbl_23835	none	STRG.2767.1,Trinity_GG_1525_c0_g1_i3,blat.proc3825148.chain_2715	3	STRG.2767.2,Trinity_GG_1525_c0_g1_i2,blat.proc3825148.chain_2713	3
scaffold_5	alt_acceptor	18989360	18989361	+	asmbl_46300	none	STRG.7015.2	1	STRG.7015.1,Trinity_GG_21162_c0_g1_i1,blat.proc3825166.chain_3218	3
scaffold_17	alternate_exon	8398576	8398679	-	asmbl_18092	none	STRG.20461.1,blat.proc3825158.chain_1515	2	STRG.20461.2,Trinity_GG_11516_c0_g1_i1,blat.proc3825158.chain_1514	3
scaffold_15	alternate_exon	1506891	1506988	+	asmbl_15014	none	STRG.17964.2,Trinity_GG_27185_c0_g1_i4,blat.proc3825172.chain_2673	3	STRG.17964.1	1
scaffold_1	spliced_intron	12690151	12690339	-	asmbl_745	none	STRG.893.1,STRG.893.2,blat.proc3825148.chain_876	3	STRG.893.3,STRG.893.4,Trinity_GG_464_c0_g1_i1,blat.proc3825148.chain_879	4
scaffold_11	retained_intron	17374697	17374848	+	asmbl_6221	none	Trinity_GG_25216_c0_g1_i7,blat.proc3825170.chain_2879	2	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2881,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	5
scaffold_25	starts_in_intron	9942653	9942653	-	asmbl_34535	none	STRG.27808.1	1	blat.proc3825162.chain_1154	1
scaffold_26	alternate_exon	9100082	9101417	+	asmbl_35206	none	STRG.28476.1,Trinity_GG_33036_c0_g1_i2,blat.proc3825178.chain_1529	3	STRG.28476.2,blat.proc3825178.chain_1528	2
scaffold_8	starts_in_intron	12910046	12910046	-	asmbl_52244	none	STRG.10480.1,Trinity_GG_5838_c5_g1_i1,blat.proc3825152.chain_2741	3	STRG.10480.2,STRG.10480.3	2
scaffold_5	retained_intron	15521839	15522081	-	asmbl_44684	none	STRG.6745.1,blat.proc3825150.chain_2945	2	STRG.6745.2,blat.proc3825150.chain_2943	2
scaffold_12	starts_in_intron	5339507	5339507	+	asmbl_7651	none	Trinity_GG_25416_c0_g1_i1,blat.proc3825170.chain_3221	2	STRG.14693.1,Trinity_GG_25416_c0_g1_i2,blat.proc3825170.chain_3220	3
scaffold_13	retained_intron	9957806	9957985	+	asmbl_11217	none	STRG.16237.2,blat.proc3825172.chain_972	2	STRG.16237.1	1
scaffold_24	retained_intron	6307469	6307627	+	asmbl_32302,asmbl_32303,asmbl_32304	none	STRG.26696.1,blat.proc3825176.chain_3579,blat.proc3825176.chain_3580,blat.proc3825176.chain_3581	4	STRG.26696.2	1
scaffold_13	spliced_intron	16460036	16460320	-	asmbl_10300	none	STRG.16703.3,Trinity_GG_9330_c0_g1_i5,blat.proc3825156.chain_1488	3	STRG.16703.2,blat.proc3825156.chain_1486	2
scaffold_21	retained_intron	532678	533027	-	asmbl_27332	none	Trinity_GG_13229_c0_g1_i2,Trinity_GG_13229_c0_g1_i3,blat.proc3825160.chain_860,blat.proc3825160.chain_861	4	STRG.23746.1,Trinity_GG_13229_c0_g1_i1,blat.proc3825160.chain_859	3
scaffold_2	alt_acceptor	2993177	2993178	+	asmbl_24267	none	STRG.1739.2	1	STRG.1739.1,blat.proc3825164.chain_1904	2
scaffold_3	starts_in_intron	11306688	11306688	-	asmbl_39144	none	blat.proc3825148.chain_3429	1	STRG.3563.1,blat.proc3825148.chain_3427,blat.proc3825148.chain_3428	3
scaffold_1	alt_acceptor	6980107	6980108	+	asmbl_1872	none	STRG.501.1,blat.proc3825164.chain_653	2	STRG.501.2	1
scaffold_5	alt_acceptor	6664232	6664233	-	asmbl_44127	none	STRG.6073.3	1	STRG.6073.1,STRG.6073.2	2
scaffold_17	retained_intron	3998584	3998790	+	asmbl_18753,asmbl_18754,asmbl_18755,asmbl_18758,asmbl_18759	none	STRG.20160.1,STRG.20160.3,STRG.20160.4,blat.proc3825174.chain_1032,blat.proc3825174.chain_1033,blat.proc3825174.chain_1034	6	blat.proc3825174.chain_1031	1
scaffold_19	alt_donor	3559309	3559310	+	asmbl_21331	none	STRG.22045.1	1	STRG.22045.3,STRG.22045.4,Trinity_GG_29503_c1_g1_i1,blat.proc3825174.chain_3079	4
scaffold_21	alt_acceptor	9930172	9930173	-	asmbl_27993	none	STRG.24461.3	1	STRG.24461.1,STRG.24461.4,blat.proc3825160.chain_1641	3
scaffold_15	spliced_intron	13972065	13972165	+	asmbl_15660	none	STRG.18831.1,Trinity_GG_27636_c0_g1_i2,blat.proc3825172.chain_3460	3	blat.proc3825172.chain_3459	1
scaffold_2	retained_intron	4839101	4839436	-	asmbl_23101,asmbl_23102	none	Trinity_GG_1073_c0_g1_i5,blat.proc3825148.chain_1918,blat.proc3825148.chain_1922	3	STRG.1905.1	1
scaffold_12	ends_in_intron	5567134	5567134	-	asmbl_8508	none	blat.proc3825154.chain_3198	1	STRG.14712.1,STRG.14712.2,blat.proc3825154.chain_3199,blat.proc3825154.chain_3200	4
scaffold_25	spliced_intron	3615584	3615675	+	asmbl_33435	none	STRG.27306.1	1	STRG.27306.2	1
scaffold_7	alt_donor	13575693	13575694	+	asmbl_50364	none	STRG.9460.1,Trinity_GG_22572_c0_g1_i1,blat.proc3825168.chain_1990	3	STRG.9460.2,Trinity_GG_22572_c0_g1_i2,blat.proc3825168.chain_1991	3
scaffold_20	retained_intron	10660786	10661477	+	asmbl_26977	none	STRG.23599.1,Trinity_GG_30362_c0_g1_i3,blat.proc3825176.chain_773	3	STRG.23599.2,Trinity_GG_30362_c0_g1_i1,blat.proc3825176.chain_774	3
scaffold_27	alternate_exon	382928	383179	-	asmbl_36682	none	STRG.28567.5,blat.proc3825162.chain_1733	2	STRG.28567.1,blat.proc3825162.chain_1731	2
scaffold_25	alt_acceptor	3627660	3627661	+	asmbl_33436	none	STRG.27312.1,blat.proc3825178.chain_426,blat.proc3825178.chain_427	3	STRG.27312.2,STRG.27312.3,blat.proc3825178.chain_429	3
scaffold_11	retained_intron	8105125	8105409	+	asmbl_5731	none	blat.proc3825170.chain_2349	1	STRG.13823.1,STRG.13823.2,STRG.13823.3,STRG.13823.4,blat.proc3825170.chain_2348,blat.proc3825170.chain_2350,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	8
scaffold_14	alt_donor	10692528	10692529	+	asmbl_12342	none	STRG.17422.4	1	STRG.17422.1,blat.proc3825172.chain_2154,blat.proc3825172.chain_2156	3
scaffold_4	alt_acceptor	14679968	14679969	-	asmbl_43075	none	STRG.5102.2,blat.proc3825150.chain_1226	2	STRG.5102.1	1
scaffold_2	retained_intron	9790539	9790880	+	asmbl_24687	none	Trinity_GG_18541_c0_g1_i1,blat.proc3825164.chain_2363	2	STRG.2185.1,Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2361,blat.proc3825164.chain_2364,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	6
scaffold_20	alternate_exon	6944662	6948279	-	asmbl_25852,asmbl_25854,asmbl_25855	none	STRG.23269.1,STRG.23269.2,STRG.23269.3,STRG.23269.5,blat.proc3825160.chain_305	5	STRG.23269.6,blat.proc3825160.chain_306,blat.proc3825160.chain_307,blat.proc3825160.chain_308	4
scaffold_3	alt_donor	3323907	3323908	-	asmbl_38774	none	blat.proc3825148.chain_2946	1	STRG.3080.1,STRG.3080.2,blat.proc3825148.chain_2945	3
scaffold_16	starts_in_intron	5754120	5754120	+	asmbl_16224	none	Trinity_GG_27853_c1_g1_i6,blat.proc3825174.chain_159	2	STRG.19319.1,STRG.19319.2,Trinity_GG_27853_c1_g1_i2,blat.proc3825174.chain_156,blat.proc3825174.chain_157,blat.proc3825174.chain_158	6
scaffold_10	alt_donor	3066071	3066072	-	asmbl_4157	none	STRG.12130.1,blat.proc3825154.chain_664	2	blat.proc3825154.chain_667	1
scaffold_28	spliced_intron	5358871	5358960	-	asmbl_38286	none	STRG.29684.1,blat.proc3825162.chain_2873	2	STRG.29684.2	1
scaffold_27	spliced_intron	2793632	2795233	+	asmbl_36114,asmbl_36115,asmbl_36116	none	STRG.28760.1,blat.proc3825178.chain_1914,blat.proc3825178.chain_1916	3	STRG.28760.2,Trinity_GG_33228_c1_g1_i2,blat.proc3825178.chain_1918	3
scaffold_13	spliced_intron	13570331	13570402	+	asmbl_11396	none	blat.proc3825172.chain_1207	1	STRG.16416.1,Trinity_GG_26347_c0_g1_i1	2
scaffold_26	ends_in_intron	4593222	4593222	-	asmbl_35569	none	Trinity_GG_15782_c0_g1_i1,blat.proc3825162.chain_1437	2	STRG.28182.1,STRG.28182.2,blat.proc3825162.chain_1435,blat.proc3825162.chain_1436	4
scaffold_8	starts_in_intron	17853168	17853168	+	asmbl_53518	none	Trinity_GG_23230_c0_g1_i1,blat.proc3825168.chain_3205	2	STRG.10696.1,Trinity_GG_23230_c0_g1_i2,blat.proc3825168.chain_3204	3
scaffold_4	alternate_exon	17116847	17120086	+	asmbl_42034	none	STRG.5308.1,blat.proc3825166.chain_1659,blat.proc3825166.chain_1665,blat.proc3825166.chain_1666	4	STRG.5308.4	1
scaffold_13	ends_in_intron	8807835	8807835	-	asmbl_9980	none	Trinity_GG_9086_c0_g1_i5,blat.proc3825156.chain_1073	2	blat.proc3825156.chain_1065,blat.proc3825156.chain_1067,blat.proc3825156.chain_1070	3
scaffold_12	spliced_intron	15213364	15213677	+	asmbl_8113,asmbl_8115,asmbl_8116	none	STRG.15322.1,STRG.15322.3,Trinity_GG_25697_c0_g1_i3,Trinity_GG_25697_c0_g1_i4,Trinity_GG_25697_c0_g1_i5,blat.proc3825170.chain_3727,blat.proc3825170.chain_3729,blat.proc3825170.chain_3730	8	STRG.15322.2,Trinity_GG_25697_c0_g1_i2,blat.proc3825170.chain_3728	3
scaffold_14	alt_acceptor	330806	330807	-	asmbl_12822,asmbl_12824	none	STRG.16724.1,Trinity_GG_9360_c0_g1_i4,blat.proc3825156.chain_1546	3	STRG.16724.2,Trinity_GG_9360_c0_g1_i2,Trinity_GG_9360_c0_g1_i3,blat.proc3825156.chain_1548,blat.proc3825156.chain_1549	5
scaffold_24	spliced_intron	1078656	1078823	+	asmbl_32066	none	STRG.26383.1,blat.proc3825176.chain_3364	2	STRG.26383.2,blat.proc3825176.chain_3363	2
scaffold_18	spliced_intron	5583163	5583302	+	asmbl_20589	none	STRG.21310.2	1	STRG.21310.1,Trinity_GG_29048_c0_g1_i1,Trinity_GG_29048_c0_g1_i2,Trinity_GG_29048_c1_g1_i1,blat.proc3825174.chain_2260,blat.proc3825174.chain_2261,blat.proc3825174.chain_2262	7
scaffold_27	alternate_exon	1402121	1402155	+	asmbl_35999	none	STRG.28621.1	1	STRG.28621.2	1
scaffold_5	retained_intron	12660558	12661236	+	asmbl_45810,asmbl_45811,asmbl_45813	none	STRG.6505.3,blat.proc3825166.chain_2636,blat.proc3825166.chain_2638,blat.proc3825166.chain_2639	4	STRG.6505.1,STRG.6505.2,STRG.6505.4,blat.proc3825166.chain_2637	4
scaffold_24	alt_acceptor	4319605	4319606	+	asmbl_32187,asmbl_32188,asmbl_32190	none	STRG.26600.2,STRG.26600.3,Trinity_GG_31987_c0_g1_i1,blat.proc3825176.chain_3494	4	Trinity_GG_31987_c0_g1_i2,blat.proc3825176.chain_3495	2
scaffold_24	spliced_intron	8736275	8736426	-	asmbl_33097,asmbl_33099,asmbl_33100	none	STRG.26890.1,blat.proc3825162.chain_181,blat.proc3825162.chain_182,blat.proc3825162.chain_184	4	Trinity_GG_15007_c0_g1_i6,blat.proc3825162.chain_185	2
scaffold_6	alternate_exon	9133910	9134832	+	asmbl_47217,asmbl_47218	none	STRG.7790.3,blat.proc3825168.chain_217	2	STRG.7790.5	1
scaffold_5	retained_intron	10253401	10253602	-	asmbl_44332,asmbl_44334	none	STRG.6327.2,blat.proc3825150.chain_2458,blat.proc3825150.chain_2459	3	STRG.6327.1,blat.proc3825150.chain_2456,blat.proc3825150.chain_2457	3
scaffold_13	spliced_intron	8721343	8721448	+	asmbl_11144	none	STRG.16143.1,Trinity_GG_26153_c0_g2_i1,blat.proc3825172.chain_856	3	STRG.16143.2,Trinity_GG_26153_c0_g1_i1,blat.proc3825172.chain_855	3
scaffold_3	retained_intron	7593502	7593776	+	asmbl_40171	none	blat.proc3825164.chain_3625	1	Trinity_GG_19221_c0_g1_i6,blat.proc3825164.chain_3628	2
scaffold_12	alt_donor	5089640	5089641	-	asmbl_8480,asmbl_8481	none	STRG.14685.1,blat.proc3825154.chain_3162,blat.proc3825154.chain_3163,blat.proc3825154.chain_3164	4	blat.proc3825154.chain_3165	1
scaffold_24	spliced_intron	5951108	5951617	+	asmbl_32251,asmbl_32262,asmbl_32268,asmbl_32269,asmbl_32274	none	STRG.26675.1,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3675,blat.proc3825176.chain_3678,blat.proc3825176.chain_3680	6	blat.proc3825176.chain_3664	1
scaffold_14	spliced_intron	4780275	4781266	-	asmbl_13071,asmbl_13073	none	STRG.17010.1,STRG.17010.2,blat.proc3825156.chain_1840	3	STRG.17010.3,blat.proc3825156.chain_1841	2
scaffold_21	spliced_intron	7424823	7425004	-	asmbl_27807,asmbl_27809,asmbl_27810,asmbl_27811	none	STRG.24271.2,blat.proc3825160.chain_1444,blat.proc3825160.chain_1445,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	5	blat.proc3825160.chain_1443	1
scaffold_21	spliced_intron	3192371	3192392	+	asmbl_28478	none	STRG.23947.1	1	blat.proc3825176.chain_1092,blat.proc3825176.chain_1093,blat.proc3825176.chain_1094	3
scaffold_11	retained_intron	13092994	13093788	+	asmbl_6033	none	Trinity_GG_25144_c1_g1_i2,blat.proc3825170.chain_2753	2	Trinity_GG_25144_c1_g1_i1,blat.proc3825170.chain_2752	2
scaffold_4	spliced_intron	18288544	18288639	+	asmbl_42090	none	STRG.5425.2	1	STRG.5425.1	1
scaffold_3	ends_in_intron	19836455	19836455	-	asmbl_39665	none	blat.proc3825150.chain_256	1	STRG.4098.1,blat.proc3825150.chain_255,blat.proc3825150.chain_257	3
scaffold_18	ends_in_intron	179368	179368	+	asmbl_20266,asmbl_20267	none	STRG.20973.2,STRG.20973.3,Trinity_GG_28849_c0_g1_i5,Trinity_GG_28849_c0_g1_i6,blat.proc3825174.chain_1896,blat.proc3825174.chain_1899	6	STRG.20973.1,blat.proc3825174.chain_1895,blat.proc3825174.chain_1897,blat.proc3825174.chain_1898	4
scaffold_1	retained_intron	5205899	5206482	+	asmbl_1704,asmbl_1705,asmbl_1709,asmbl_1711	none	STRG.329.2,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_476	4	STRG.329.1,STRG.329.3,blat.proc3825164.chain_469,blat.proc3825164.chain_473,blat.proc3825164.chain_475	5
scaffold_6	retained_intron	7173897	7174059	+	asmbl_47060	none	blat.proc3825168.chain_82	1	STRG.7628.1,STRG.7628.2,STRG.7628.4,STRG.7628.5,blat.proc3825168.chain_83,blat.proc3825168.chain_84,blat.proc3825168.chain_85	7
scaffold_15	spliced_intron	14322902	14323125	-	asmbl_14718,asmbl_14719	none	Trinity_GG_10597_c0_g1_i3,Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712,blat.proc3825156.chain_3718	4	Trinity_GG_10597_c0_g1_i4,Trinity_GG_10597_c0_g1_i7	2
scaffold_20	alt_acceptor	7797215	7797216	-	asmbl_25918	none	STRG.23325.2	1	STRG.23325.1	1
scaffold_8	alt_acceptor	7392373	7392374	+	asmbl_52985	none	STRG.10064.2	1	STRG.10064.1,blat.proc3825168.chain_2630	2
scaffold_7	starts_in_intron	5343906	5343906	-	asmbl_50882	none	blat.proc3825152.chain_1318	1	STRG.8873.2	1
scaffold_16	retained_exon	15219675	15219803	+	asmbl_16719	none	STRG.19882.2,blat.proc3825174.chain_761	2	STRG.19882.1	1
scaffold_3	starts_in_intron	19807743	19807743	+	asmbl_40777,asmbl_40778	none	blat.proc3825166.chain_566,blat.proc3825166.chain_567	2	STRG.4097.1,STRG.4097.2,STRG.4097.3,STRG.4097.4,blat.proc3825166.chain_568,blat.proc3825166.chain_569	6
scaffold_4	retained_intron	4095323	4095985	+	asmbl_41220,asmbl_41227,asmbl_41229	none	STRG.4315.2,blat.proc3825166.chain_705,blat.proc3825166.chain_709	3	STRG.4315.1,blat.proc3825166.chain_704	2
scaffold_14	spliced_intron	8415587	8415753	+	asmbl_12243	none	STRG.17281.1,blat.proc3825172.chain_2049	2	STRG.17281.2,STRG.17281.3,Trinity_GG_26820_c0_g1_i3,blat.proc3825172.chain_2050,blat.proc3825172.chain_2051	5
scaffold_14	alt_donor	15346207	15346208	-	asmbl_13715	none	blat.proc3825156.chain_2607	1	STRG.17765.1,Trinity_GG_9998_c0_g1_i4,blat.proc3825156.chain_2605	3
scaffold_24	alt_donor	10089224	10089225	+	asmbl_32540	none	blat.proc3825162.chain_331	1	STRG.26971.2	1
scaffold_6	ends_in_intron	14593576	14593576	+	asmbl_47629	none	STRG.8222.2,blat.proc3825168.chain_719	2	STRG.8222.1,STRG.8222.3,blat.proc3825168.chain_720	3
scaffold_20	alt_acceptor	11948483	11948484	-	asmbl_26207,asmbl_26209	none	blat.proc3825160.chain_679,blat.proc3825160.chain_682	2	STRG.23700.2	1
scaffold_20	retained_intron	9104952	9105052	+	asmbl_26830	none	blat.proc3825176.chain_616	1	STRG.23455.1,STRG.23455.2,Trinity_GG_30271_c0_g1_i1,Trinity_GG_30271_c0_g1_i2,blat.proc3825176.chain_612,blat.proc3825176.chain_615	6
scaffold_4	retained_exon	13430086	13430250	+	asmbl_41795,asmbl_41797	none	STRG.4981.1,STRG.4981.2	2	STRG.4981.3	1
scaffold_10	alt_donor	11080089	11080090	+	asmbl_3445	none	STRG.12781.1,blat.proc3825170.chain_1376	2	STRG.12781.2	1
scaffold_23	alt_acceptor	9956730	9956731	-	asmbl_31114,asmbl_31115,asmbl_31117	none	STRG.26203.1,STRG.26203.2,blat.proc3825160.chain_3297,blat.proc3825160.chain_3298	4	STRG.26203.3	1
scaffold_12	retained_intron	14124654	14125258	-	asmbl_8993	none	Trinity_GG_8555_c1_g1_i1,blat.proc3825156.chain_80	2	STRG.15244.1,STRG.15244.2,STRG.15244.3,blat.proc3825156.chain_78,blat.proc3825156.chain_79,blat.proc3825156.chain_81	6
scaffold_20	retained_intron	12076152	12076237	-	asmbl_26216,asmbl_26218	none	blat.proc3825160.chain_685,blat.proc3825160.chain_688	2	STRG.23706.1,Trinity_GG_13163_c0_g1_i1,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_689	5
scaffold_16	retained_intron	809175	809692	-	asmbl_16907,asmbl_16909,asmbl_16912	none	STRG.19064.2,STRG.19064.3,blat.proc3825158.chain_128,blat.proc3825158.chain_129	4	STRG.19064.1,blat.proc3825158.chain_130,blat.proc3825158.chain_131,blat.proc3825158.chain_132	4
scaffold_3	ends_in_intron	3719373	3719373	+	asmbl_39961	none	blat.proc3825164.chain_3329	1	STRG.3094.1,blat.proc3825164.chain_3328	2
scaffold_11	retained_exon	11641270	11641333	+	asmbl_5980,asmbl_5989	none	STRG.14090.1,blat.proc3825170.chain_2633,blat.proc3825170.chain_2639	3	STRG.14090.2	1
scaffold_4	alt_donor	13825712	13825713	-	asmbl_43011	none	STRG.5009.1,blat.proc3825150.chain_1168	2	STRG.5009.2,STRG.5009.3,blat.proc3825150.chain_1167	3
scaffold_13	skipped_exon	14561719	14563633	-	asmbl_10197	none	STRG.16504.3,blat.proc3825156.chain_1270	2	STRG.16504.5	1
scaffold_5	alt_acceptor	71229	71230	+	asmbl_45069	none	STRG.5571.1	1	STRG.5571.2	1
scaffold_15	spliced_intron	2564009	2564591	+	asmbl_15066,asmbl_15067	none	STRG.18045.3,Trinity_GG_27217_c0_g1_i9	2	STRG.18045.4	1
scaffold_21	alt_acceptor	10972981	10972982	+	asmbl_28906	none	STRG.24573.1	1	STRG.24573.2	1
scaffold_2	alt_acceptor	7406494	7406495	-	asmbl_23255	none	STRG.2065.4	1	STRG.2065.1,STRG.2065.3,STRG.2065.5,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i4,Trinity_GG_1101_c0_g1_i5,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1982,blat.proc3825148.chain_1983,blat.proc3825148.chain_1985,blat.proc3825148.chain_1986	11
scaffold_14	spliced_intron	11759003	11759212	-	asmbl_13530	none	STRG.17520.2,blat.proc3825156.chain_2321	2	STRG.17520.1,STRG.17520.3,blat.proc3825156.chain_2319,blat.proc3825156.chain_2320	4
scaffold_26	alt_donor	5894719	5894720	-	asmbl_35643	none	STRG.28301.3	1	Trinity_GG_15800_c0_g1_i8,blat.proc3825162.chain_1471	2
scaffold_26	alt_donor	8177462	8177463	+	asmbl_35161	none	STRG.28419.1,blat.proc3825178.chain_1521,blat.proc3825178.chain_1522	3	STRG.28419.2,blat.proc3825178.chain_1523	2
scaffold_13	alt_acceptor	9337886	9337887	-	asmbl_10023,asmbl_10024	none	STRG.16201.1,STRG.16201.2,blat.proc3825156.chain_1010,blat.proc3825156.chain_1011	4	STRG.16201.3	1
scaffold_2	skipped_exon	8191219	8193191	+	asmbl_24617	none	STRG.2110.2,blat.proc3825164.chain_2282	2	STRG.2110.1,blat.proc3825164.chain_2284	2
scaffold_9	ends_in_intron	13282636	13282636	-	asmbl_55418	none	Trinity_GG_6351_c0_g1_i1,blat.proc3825152.chain_3744	2	STRG.11626.1,blat.proc3825152.chain_3743	2
scaffold_24	retained_intron	655307	655405	+	asmbl_32030	none	Trinity_GG_31870_c0_g1_i1,blat.proc3825176.chain_3309	2	Trinity_GG_31870_c0_g1_i3,blat.proc3825176.chain_3308	2
scaffold_12	retained_exon	8915968	8916065	+	asmbl_7837	none	STRG.14900.1,blat.proc3825170.chain_3475	2	STRG.14900.2	1
scaffold_6	retained_intron	13575827	13577850	-	asmbl_48914	none	STRG.8098.2,Trinity_GG_4614_c1_g1_i1	2	STRG.8098.3	1
scaffold_18	spliced_intron	9258671	9259387	-	asmbl_20059	none	STRG.21569.1,Trinity_GG_12060_c0_g1_i1,blat.proc3825158.chain_2488	3	STRG.21569.2,STRG.21569.3,blat.proc3825158.chain_2485	3
scaffold_7	ends_in_intron	5147	5147	-	asmbl_50654	none	Trinity_GG_4901_c0_g1_i2,blat.proc3825152.chain_1033	2	STRG.8581.1	1
scaffold_1	alternate_exon	20742759	20743261	-	asmbl_1203	none	blat.proc3825148.chain_1414	1	STRG.1420.1,blat.proc3825148.chain_1411	2
scaffold_24	spliced_intron	3655652	3655776	+	asmbl_32147,asmbl_32148,asmbl_32149,asmbl_32150,asmbl_32151,asmbl_32154	none	STRG.26550.1,STRG.26550.2,STRG.26550.3,STRG.26550.4,STRG.26550.5,STRG.26550.6,Trinity_GG_31970_c0_g1_i12,Trinity_GG_31970_c0_g1_i5,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463,blat.proc3825176.chain_3464,blat.proc3825176.chain_3467,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469,blat.proc3825176.chain_3470	15	blat.proc3825176.chain_3465,blat.proc3825176.chain_3466	2
scaffold_1	spliced_intron	12564359	12564465	+	asmbl_2233	none	STRG.868.1,blat.proc3825164.chain_1056	2	blat.proc3825164.chain_1057	1
scaffold_8	retained_intron	8733193	8733226	+	asmbl_53028,asmbl_53029	none	STRG.10134.1,STRG.10134.3,Trinity_GG_22941_c1_g1_i1,blat.proc3825168.chain_2681	4	STRG.10134.4	1
scaffold_26	retained_exon	5648478	5648504	-	asmbl_35608,asmbl_35610,asmbl_35611,asmbl_35612,asmbl_35613,asmbl_35614	none	STRG.28272.1,STRG.28272.3,blat.proc3825162.chain_1526,blat.proc3825162.chain_1527,blat.proc3825162.chain_1528,blat.proc3825162.chain_1529,blat.proc3825162.chain_1530	7	STRG.28272.2,blat.proc3825162.chain_1531	2
scaffold_14	starts_in_intron	12831866	12831866	+	asmbl_12451	none	blat.proc3825172.chain_2252	1	STRG.17603.1,blat.proc3825172.chain_2253,blat.proc3825172.chain_2254	3
scaffold_20	alternate_exon	5486136	5486277	-	asmbl_25762	none	STRG.23173.2,Trinity_GG_12928_c0_g1_i3,blat.proc3825160.chain_253	3	STRG.23173.1,blat.proc3825160.chain_254	2
scaffold_8	spliced_intron	11952271	11952696	+	asmbl_53298	none	STRG.10399.1	1	Trinity_GG_23095_c0_g1_i5,blat.proc3825168.chain_2958	2
scaffold_8	retained_intron	16576119	16576384	-	asmbl_52430	none	blat.proc3825152.chain_2880	1	STRG.10634.1,STRG.10634.2,blat.proc3825152.chain_2879	3
scaffold_6	ends_in_intron	13925463	13925463	-	asmbl_48964	none	Trinity_GG_4639_c0_g1_i1,blat.proc3825152.chain_579	2	STRG.8145.1,STRG.8145.2,blat.proc3825152.chain_577,blat.proc3825152.chain_578	4
scaffold_12	alt_donor	7335661	7335662	+	asmbl_7746	none	STRG.14813.3,blat.proc3825170.chain_3352	2	STRG.14813.1,STRG.14813.2,blat.proc3825170.chain_3351	3
scaffold_9	spliced_intron	17456173	17456492	-	asmbl_55643	none	STRG.11839.2,blat.proc3825154.chain_335	2	STRG.11839.1,Trinity_GG_6557_c0_g1_i4,blat.proc3825154.chain_333,blat.proc3825154.chain_334	4
scaffold_7	alt_donor	15647597	15647598	+	asmbl_50456,asmbl_50460	none	STRG.9559.1,blat.proc3825168.chain_2088,blat.proc3825168.chain_2090	3	STRG.9559.2,STRG.9559.3,blat.proc3825168.chain_2089,blat.proc3825168.chain_2092	4
scaffold_7	alt_acceptor	13866546	13866547	-	asmbl_51322	none	STRG.9480.4	1	STRG.9480.1,STRG.9480.5,blat.proc3825152.chain_1822	3
scaffold_7	spliced_intron	8842324	8844151	+	asmbl_50063	none	STRG.9134.2,blat.proc3825168.chain_1557	2	STRG.9134.1,blat.proc3825168.chain_1558	2
scaffold_1	ends_in_intron	1259631	1259631	-	asmbl_60	none	blat.proc3825148.chain_13	1	STRG.76.1,STRG.76.3,blat.proc3825148.chain_11,blat.proc3825148.chain_12	4
scaffold_13	spliced_intron	6431003	6431154	-	asmbl_9793,asmbl_9794	none	STRG.15943.1,blat.proc3825156.chain_850	2	Trinity_GG_8977_c0_g1_i10,blat.proc3825156.chain_845,blat.proc3825156.chain_846,blat.proc3825156.chain_847,blat.proc3825156.chain_849	5
scaffold_16	retained_intron	6198531	6198916	+	asmbl_16298	none	STRG.19371.2,blat.proc3825174.chain_251	2	STRG.19371.1	1
scaffold_4	alternate_exon	5188786	5190682	-	asmbl_42561,asmbl_42563	none	STRG.4410.3,STRG.4410.4,blat.proc3825150.chain_644	3	STRG.4410.2,blat.proc3825150.chain_641	2
scaffold_21	retained_intron	10848260	10848466	-	asmbl_28077	none	STRG.24556.1,blat.proc3825160.chain_1786	2	STRG.24556.2,blat.proc3825160.chain_1785	2
scaffold_6	ends_in_intron	18008164	18008164	-	asmbl_49220	none	blat.proc3825152.chain_937	1	STRG.8488.1	1
scaffold_24	retained_exon	6833624	6833656	+	asmbl_32347,asmbl_32348	none	STRG.26736.1,STRG.26736.4,blat.proc3825176.chain_3729	3	STRG.26736.2,blat.proc3825176.chain_3732,blat.proc3825176.chain_3734	3
scaffold_1	starts_in_intron	169083	169083	+	asmbl_1403,asmbl_1404	none	Trinity_GG_17335_c0_g1_i1,Trinity_GG_17335_c0_g1_i2,blat.proc3825164.chain_110,blat.proc3825164.chain_111	4	STRG.15.1,Trinity_GG_17335_c0_g2_i1,blat.proc3825164.chain_113	3
scaffold_21	alt_acceptor	2483177	2483178	-	asmbl_27465,asmbl_27466,asmbl_27467	none	STRG.23873.1,STRG.23873.2,STRG.23873.3,Trinity_GG_13318_c0_g1_i2,blat.proc3825160.chain_1023	5	STRG.23873.4	1
scaffold_14	ends_in_intron	11754552	11754552	+	asmbl_12404	none	blat.proc3825172.chain_2163	1	STRG.17519.1,STRG.17519.2,blat.proc3825172.chain_2162,blat.proc3825172.chain_2164	4
scaffold_19	alt_donor	8219724	8219725	-	asmbl_22284,asmbl_22285	none	STRG.22275.1,STRG.22275.3,blat.proc3825158.chain_3083	3	STRG.22275.2	1
scaffold_6	starts_in_intron	8241988	8241988	+	asmbl_47115	none	STRG.7704.2,Trinity_GG_21508_c0_g1_i2,blat.proc3825168.chain_100	3	STRG.7704.1,blat.proc3825168.chain_101	2
scaffold_23	alt_donor	7281792	7281793	-	asmbl_31026	none	STRG.26052.3	1	STRG.26052.2	1
scaffold_18	ends_in_intron	1903399	1903399	-	asmbl_19654	none	Trinity_GG_11794_c2_g1_i1,blat.proc3825158.chain_2022	2	STRG.21081.3,STRG.21081.8,blat.proc3825158.chain_2012,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	6
scaffold_19	retained_intron	7366595	7366687	-	asmbl_22240	none	Trinity_GG_12398_c0_g1_i1,blat.proc3825158.chain_3051	2	STRG.22215.1,blat.proc3825158.chain_3053	2
scaffold_1	alt_donor	6661711	6661712	+	asmbl_1841	none	STRG.456.1,blat.proc3825164.chain_587	2	STRG.456.2	1
scaffold_9	alternate_exon	9757612	9760088	+	asmbl_54249	none	STRG.11351.2	1	STRG.11351.3	1
scaffold_27	starts_in_intron	7240458	7240458	-	asmbl_37099	none	blat.proc3825162.chain_2314	1	STRG.29079.1,blat.proc3825162.chain_2313	2
scaffold_23	ends_in_intron	2587070	2587070	-	asmbl_30747	none	blat.proc3825160.chain_2779	1	STRG.25725.2,blat.proc3825160.chain_2777	2
scaffold_5	spliced_intron	5972401	5972548	+	asmbl_45384	none	STRG.6011.2	1	STRG.6011.1	1
scaffold_4	spliced_intron	15678206	15678313	-	asmbl_43111,asmbl_43112,asmbl_43114	none	STRG.5151.1,STRG.5151.2,blat.proc3825150.chain_1296,blat.proc3825150.chain_1297,blat.proc3825150.chain_1298	5	blat.proc3825150.chain_1295	1
scaffold_8	alt_acceptor	4824505	4824506	+	asmbl_52853	none	STRG.9946.2	1	STRG.9946.1,blat.proc3825168.chain_2478	2
scaffold_3	alternate_exon	947964	948052	-	asmbl_38688	none	STRG.2918.1	1	blat.proc3825148.chain_2841	1
scaffold_22	alt_acceptor	3792609	3792610	-	asmbl_29188	none	STRG.24812.3	1	STRG.24812.1,STRG.24812.2,blat.proc3825160.chain_1934,blat.proc3825160.chain_1935	4
scaffold_12	starts_in_intron	15437848	15437848	-	asmbl_9088	none	blat.proc3825156.chain_206	1	STRG.15351.1,STRG.15351.2,blat.proc3825156.chain_207,blat.proc3825156.chain_208	4
scaffold_18	starts_in_intron	836819	836819	-	asmbl_19598	none	STRG.21007.3,blat.proc3825158.chain_1978	2	blat.proc3825158.chain_1974,blat.proc3825158.chain_1976,blat.proc3825158.chain_1977	3
scaffold_2	skipped_exon	14342781	14343126	-	asmbl_23597	none	blat.proc3825148.chain_2418	1	STRG.2436.1,blat.proc3825148.chain_2419	2
scaffold_11	alt_acceptor	8984397	8984398	-	asmbl_6899	none	STRG.13922.2	1	STRG.13922.1,blat.proc3825154.chain_2469	2
scaffold_11	retained_intron	4666941	4667075	+	asmbl_5494	none	STRG.13563.2,Trinity_GG_24735_c0_g1_i3,blat.proc3825170.chain_2048	3	blat.proc3825170.chain_2045,blat.proc3825170.chain_2046,blat.proc3825170.chain_2047	3
scaffold_24	starts_in_intron	8943097	8943097	-	asmbl_33124	none	blat.proc3825162.chain_290	1	STRG.26915.1,blat.proc3825162.chain_289	2
scaffold_21	alt_acceptor	2999540	2999541	+	asmbl_28431	none	STRG.23923.2,blat.proc3825176.chain_1156	2	STRG.23923.1	1
scaffold_8	alternate_exon	3049948	3050089	+	asmbl_52742	none	STRG.9821.1,blat.proc3825168.chain_2351	2	STRG.9821.2,Trinity_GG_22769_c0_g1_i1	2
scaffold_6	alternate_exon	13224604	13224668	+	asmbl_47508,asmbl_47509	none	blat.proc3825168.chain_572,blat.proc3825168.chain_573	2	STRG.8084.1,STRG.8084.2,blat.proc3825168.chain_571,blat.proc3825168.chain_575,blat.proc3825168.chain_576	5
scaffold_13	alt_acceptor	7526169	7526170	-	asmbl_9897	none	STRG.16048.1,Trinity_GG_9022_c0_g1_i1,blat.proc3825156.chain_946	3	STRG.16048.2,STRG.16048.3,Trinity_GG_9022_c0_g1_i3,Trinity_GG_9022_c0_g1_i4,blat.proc3825156.chain_945,blat.proc3825156.chain_947	6
scaffold_3	retained_intron	4267463	4267695	-	asmbl_38793,asmbl_38794	none	STRG.3121.1,STRG.3121.3,Trinity_GG_1688_c0_g1_i1,Trinity_GG_1688_c0_g2_i2,blat.proc3825148.chain_2979,blat.proc3825148.chain_2980	6	STRG.3121.2	1
scaffold_4	starts_in_intron	12438555	12438555	+	asmbl_41722	none	Trinity_GG_20032_c0_g1_i2,blat.proc3825166.chain_1306	2	STRG.4883.2,blat.proc3825166.chain_1308	2
scaffold_24	starts_in_intron	6075079	6075079	+	asmbl_32282	none	STRG.26664.3,blat.proc3825176.chain_3623	2	STRG.26664.1,STRG.26664.2,blat.proc3825176.chain_3622,blat.proc3825176.chain_3624	4
scaffold_1	alt_donor	14201846	14201847	+	asmbl_2347	none	STRG.1008.2,blat.proc3825164.chain_1190	2	STRG.1008.1,Trinity_GG_17929_c0_g1_i10,Trinity_GG_17929_c0_g1_i6,blat.proc3825164.chain_1188,blat.proc3825164.chain_1192	5
scaffold_1	alt_donor	12942677	12942678	+	asmbl_2281	none	STRG.930.1,blat.proc3825164.chain_1106	2	STRG.930.2	1
scaffold_17	spliced_intron	7046365	7049246	+	asmbl_18889	none	STRG.20370.1,blat.proc3825174.chain_1223,blat.proc3825174.chain_1226	3	STRG.20370.2,Trinity_GG_28477_c0_g2_i1,Trinity_GG_28477_c1_g1_i1,blat.proc3825174.chain_1230	4
scaffold_12	starts_in_intron	7113077	7113077	+	asmbl_7715	none	blat.proc3825170.chain_3298	1	STRG.14780.1,blat.proc3825170.chain_3296,blat.proc3825170.chain_3297	3
scaffold_8	alt_donor	5856597	5856598	+	asmbl_52909,asmbl_52914	none	STRG.10001.2,STRG.10001.3,Trinity_GG_22886_c0_g1_i2,Trinity_GG_22886_c0_g1_i4,blat.proc3825168.chain_2573,blat.proc3825168.chain_2575	6	STRG.10001.1,STRG.10001.4,Trinity_GG_22886_c0_g1_i1,Trinity_GG_22886_c0_g1_i3,Trinity_GG_22886_c0_g1_i5,blat.proc3825168.chain_2571,blat.proc3825168.chain_2572,blat.proc3825168.chain_2574	8
scaffold_21	starts_in_intron	5281648	5281648	-	asmbl_27646	none	blat.proc3825160.chain_1168	1	STRG.24066.1,STRG.24066.2,STRG.24066.3,STRG.24066.4,STRG.24066.5,blat.proc3825160.chain_1166,blat.proc3825160.chain_1167	7
scaffold_21	starts_in_intron	3155826	3155826	+	asmbl_28464,asmbl_28466,asmbl_28467,asmbl_28468,asmbl_28469,asmbl_28470,asmbl_28471,asmbl_28472	none	STRG.23959.2,STRG.23959.3,STRG.23959.4,STRG.23959.5,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	8	STRG.23959.1,blat.proc3825176.chain_1132,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139	4
scaffold_21	alt_donor	1054548	1054549	-	asmbl_27376,asmbl_27380,asmbl_27381	none	STRG.23787.2,STRG.23787.3,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	4	STRG.23787.1,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922	3
scaffold_20	alt_donor	4377165	4377166	+	asmbl_26585	none	STRG.23125.1,blat.proc3825176.chain_299	2	STRG.23125.2,blat.proc3825176.chain_298	2
scaffold_17	alternate_exon	11036073	11036188	-	asmbl_18267	none	STRG.20664.3	1	STRG.20664.4,blat.proc3825158.chain_1638,blat.proc3825158.chain_1639	3
scaffold_21	alt_donor	8003425	8003426	-	asmbl_27879	none	STRG.24336.2,blat.proc3825160.chain_1499	2	STRG.24336.1,blat.proc3825160.chain_1501	2
scaffold_14	retained_intron	6987427	6987843	-	asmbl_13172	none	blat.proc3825156.chain_1953	1	STRG.17138.1,blat.proc3825156.chain_1952	2
scaffold_23	alt_donor	4312110	4312111	+	asmbl_31495	none	blat.proc3825176.chain_2773	1	STRG.25852.1,Trinity_GG_31566_c0_g1_i9,blat.proc3825176.chain_2772,blat.proc3825176.chain_2777,blat.proc3825176.chain_2779	5
scaffold_20	retained_exon	2403441	2403500	+	asmbl_26488	none	blat.proc3825176.chain_155	1	STRG.22972.1,blat.proc3825176.chain_157	2
scaffold_7	retained_intron	1236503	1236590	+	asmbl_49589,asmbl_49594,asmbl_49601,asmbl_49602	none	STRG.8637.1,STRG.8637.2,Trinity_GG_22033_c0_g1_i15,Trinity_GG_22033_c0_g1_i4	4	STRG.8637.5,STRG.8637.6,Trinity_GG_22033_c0_g1_i2	3
scaffold_1	ends_in_intron	4117542	4117542	+	asmbl_1638	none	blat.proc3825164.chain_375	1	STRG.251.1,blat.proc3825164.chain_373	2
scaffold_3	retained_intron	12774687	12774814	+	asmbl_40414	none	STRG.3668.3,Trinity_GG_19373_c0_g1_i1,blat.proc3825166.chain_172	3	STRG.3668.1,STRG.3668.2	2
scaffold_22	starts_in_intron	1721525	1721525	+	asmbl_29930	none	Trinity_GG_31012_c0_g1_i1,blat.proc3825176.chain_1902	2	STRG.24764.1,Trinity_GG_31012_c0_g1_i2,blat.proc3825176.chain_1903	3
scaffold_8	retained_intron	4233387	4233662	+	asmbl_52826	none	blat.proc3825168.chain_2491	1	STRG.9905.1,blat.proc3825168.chain_2493,blat.proc3825168.chain_2494	3
scaffold_1	alt_acceptor	13518406	13518407	-	asmbl_816	none	STRG.965.2,blat.proc3825148.chain_945	2	STRG.965.1,blat.proc3825148.chain_944	2
scaffold_6	retained_exon	16595769	16595889	-	asmbl_49143,asmbl_49145	none	STRG.8385.2,STRG.8385.3,blat.proc3825152.chain_772	3	STRG.8385.1,blat.proc3825152.chain_770	2
scaffold_26	retained_exon	9829802	9829918	+	asmbl_35274	none	STRG.28521.1,blat.proc3825178.chain_1551	2	blat.proc3825178.chain_1550	1
scaffold_13	alt_acceptor	732825	732826	+	asmbl_10507	none	STRG.15459.2	1	STRG.15459.1,STRG.15459.3,blat.proc3825172.chain_122	3
scaffold_8	ends_in_intron	11811607	11811607	+	asmbl_53268	none	blat.proc3825168.chain_2984	1	STRG.10386.1,blat.proc3825168.chain_2986,blat.proc3825168.chain_2987	3
scaffold_4	alt_donor	8621856	8621857	-	asmbl_42783	none	STRG.4680.2	1	STRG.4680.1,blat.proc3825150.chain_900,blat.proc3825150.chain_901	3
scaffold_7	alt_donor	15270196	15270197	+	asmbl_50425,asmbl_50434	none	STRG.9546.4,blat.proc3825168.chain_2121	2	STRG.9546.1,STRG.9546.2,STRG.9546.3,blat.proc3825168.chain_2120,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123,blat.proc3825168.chain_2125	7
scaffold_5	alt_donor	8680340	8680341	-	asmbl_44224,asmbl_44226	none	STRG.6205.2,blat.proc3825150.chain_2388	2	STRG.6205.1,blat.proc3825150.chain_2389,blat.proc3825150.chain_2390	3
scaffold_24	starts_in_intron	3394475	3394475	+	asmbl_32145	none	Trinity_GG_31961_c0_g1_i2,blat.proc3825176.chain_3453	2	STRG.26537.1,blat.proc3825176.chain_3454	2
scaffold_15	alt_donor	13561742	13561743	-	asmbl_14641	none	STRG.18786.1,blat.proc3825156.chain_3630	2	STRG.18786.2,STRG.18786.3,blat.proc3825156.chain_3629	3
scaffold_10	spliced_intron	13767257	13767588	+	asmbl_3617	none	STRG.12970.1	1	Trinity_GG_24455_c0_g1_i1	1
scaffold_25	ends_in_intron	8424310	8424310	+	asmbl_33732	none	blat.proc3825178.chain_748	1	STRG.27674.1,blat.proc3825178.chain_747	2
scaffold_12	alternate_exon	16438557	16438733	+	asmbl_8186	none	blat.proc3825172.chain_120	1	STRG.15407.1	1
scaffold_5	alt_acceptor	18222896	18222897	+	asmbl_46218,asmbl_46219,asmbl_46221	none	STRG.6959.1,STRG.6959.2,STRG.6959.4,blat.proc3825166.chain_3166,blat.proc3825166.chain_3167	5	STRG.6959.3,STRG.6959.5	2
scaffold_24	ends_in_intron	442919	442919	+	asmbl_32019	none	Trinity_GG_31878_c0_g1_i5,blat.proc3825176.chain_3324	2	STRG.26337.1,blat.proc3825176.chain_3326,blat.proc3825176.chain_3328	3
scaffold_3	ends_in_intron	8170293	8170293	-	asmbl_39017	none	Trinity_GG_1828_c11_g1_i1,blat.proc3825148.chain_3285	2	STRG.3440.1	1
scaffold_14	alt_acceptor	13897828	13897829	+	asmbl_12510,asmbl_12513	none	STRG.17673.1,blat.proc3825172.chain_2392	2	STRG.17673.2,STRG.17673.3,STRG.17673.4,blat.proc3825172.chain_2390	4
scaffold_13	retained_intron	7217965	7218248	+	asmbl_11025,asmbl_11027	none	blat.proc3825172.chain_814,blat.proc3825172.chain_816	2	blat.proc3825172.chain_811	1
scaffold_9	starts_in_intron	9604969	9604969	-	asmbl_55211	none	STRG.11328.1	1	STRG.11328.2	1
scaffold_2	spliced_intron	15271155	15271232	+	asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019,asmbl_25020	none	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2617,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	8	blat.proc3825164.chain_2622	1
scaffold_14	alt_acceptor	202906	202907	-	asmbl_12797,asmbl_12803	none	STRG.16713.4,blat.proc3825156.chain_1542	2	STRG.16713.1,STRG.16713.2,blat.proc3825156.chain_1540,blat.proc3825156.chain_1541	4
scaffold_7	spliced_intron	12428916	12429023	-	asmbl_51222	none	STRG.9342.1,blat.proc3825152.chain_1721,blat.proc3825152.chain_1722	3	Trinity_GG_5259_c0_g1_i3,blat.proc3825152.chain_1719	2
scaffold_9	spliced_intron	15384227	15384543	+	asmbl_54558,asmbl_54561	none	STRG.11739.1,blat.proc3825170.chain_501,blat.proc3825170.chain_503	3	blat.proc3825170.chain_502	1
scaffold_20	starts_in_intron	10784403	10784403	+	asmbl_26991	none	Trinity_GG_30370_c0_g1_i1,blat.proc3825176.chain_783	2	STRG.23605.1,blat.proc3825176.chain_784	2
scaffold_20	ends_in_intron	11940875	11940875	-	asmbl_26204	none	blat.proc3825160.chain_776	1	blat.proc3825160.chain_778	1
scaffold_26	alt_acceptor	9090035	9090036	-	asmbl_35770	none	STRG.28474.2	1	STRG.28474.1,blat.proc3825162.chain_1693,blat.proc3825162.chain_1694	3
scaffold_1	ends_in_intron	4215434	4215434	-	asmbl_182	none	Trinity_GG_91_c0_g1_i1,blat.proc3825148.chain_144	2	STRG.253.1	1
scaffold_23	alt_acceptor	806133	806134	-	asmbl_30612	none	blat.proc3825160.chain_2754	1	STRG.25583.3	1
scaffold_14	retained_intron	2573325	2573401	+	asmbl_11880	none	Trinity_GG_26589_c0_g1_i2,Trinity_GG_26589_c0_g1_i3,blat.proc3825172.chain_1642,blat.proc3825172.chain_1643	4	STRG.16865.1,Trinity_GG_26589_c0_g1_i1,blat.proc3825172.chain_1641	3
scaffold_12	starts_in_intron	4985621	4985621	+	asmbl_7627	none	Trinity_GG_25363_c1_g1_i1,blat.proc3825170.chain_3142	2	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3139	5
scaffold_15	retained_intron	5454516	5454744	-	asmbl_14210	none	Trinity_GG_10273_c0_g1_i6,blat.proc3825156.chain_3107	2	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	6
scaffold_16	starts_in_intron	3566533	3566533	-	asmbl_16984	none	STRG.19171.1	1	STRG.19171.2,blat.proc3825158.chain_264	2
scaffold_25	starts_in_intron	3550584	3550584	-	asmbl_34136	none	blat.proc3825162.chain_666	1	STRG.27301.1,STRG.27301.2,blat.proc3825162.chain_667	3
scaffold_2	skipped_exon	9159684	9161313	+	asmbl_24671,asmbl_24673	none	STRG.2164.1,Trinity_GG_18534_c0_g1_i1,Trinity_GG_18534_c0_g1_i2,blat.proc3825164.chain_2350,blat.proc3825164.chain_2351	5	STRG.2164.2	1
scaffold_11	ends_in_intron	8142568	8142568	-	asmbl_6847	none	Trinity_GG_7712_c1_g1_i2,blat.proc3825154.chain_2342	2	STRG.13826.5,Trinity_GG_7712_c1_g1_i1,blat.proc3825154.chain_2343	3
scaffold_2	ends_in_intron	13443872	13443872	+	asmbl_24854	none	Trinity_GG_18637_c0_g1_i1,blat.proc3825164.chain_2546	2	STRG.2361.1,Trinity_GG_18637_c0_g1_i2,blat.proc3825164.chain_2545	3
scaffold_14	retained_intron	15753825	15753858	-	asmbl_13747	none	STRG.17814.1,Trinity_GG_10009_c0_g1_i1,blat.proc3825156.chain_2626	3	STRG.17814.2	1
scaffold_10	ends_in_intron	533649	533649	-	asmbl_3958	none	Trinity_GG_6601_c2_g1_i1,blat.proc3825154.chain_407	2	STRG.11932.2	1
scaffold_1	retained_intron	12683677	12684002	+	asmbl_2246,asmbl_2247	none	blat.proc3825164.chain_1037,blat.proc3825164.chain_1039,blat.proc3825164.chain_1040	3	STRG.892.1,STRG.892.2,blat.proc3825164.chain_1038	3
scaffold_27	alt_donor	2881986	2881987	+	asmbl_36147	none	blat.proc3825178.chain_1942	1	blat.proc3825178.chain_1939	1
scaffold_6	spliced_intron	8164348	8164374	-	asmbl_48533	none	STRG.7697.1	1	STRG.7697.2	1
scaffold_21	retained_intron	7495452	7495669	-	asmbl_27827	none	blat.proc3825160.chain_1414	1	STRG.24281.1,STRG.24281.2,blat.proc3825160.chain_1415	3
scaffold_3	alternate_exon	3249267	3250442	+	asmbl_39938	none	STRG.3072.6,Trinity_GG_19083_c2_g1_i1,blat.proc3825164.chain_3396	3	STRG.3072.2,STRG.3072.4,STRG.3072.5,blat.proc3825164.chain_3395	4
scaffold_7	alt_acceptor	18392890	18392891	-	asmbl_51471,asmbl_51472,asmbl_51474,asmbl_51476,asmbl_51479	none	STRG.9670.5,STRG.9670.6,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2013,blat.proc3825152.chain_2014,blat.proc3825152.chain_2015	7	STRG.9670.1,STRG.9670.2,STRG.9670.3,STRG.9670.4,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2016,blat.proc3825152.chain_2017,blat.proc3825152.chain_2018,blat.proc3825152.chain_2020,blat.proc3825152.chain_2021	14
scaffold_5	alternate_exon	8764200	8764281	-	asmbl_44238	none	Trinity_GG_3495_c0_g1_i3,blat.proc3825150.chain_2406	2	STRG.6212.1,Trinity_GG_3495_c0_g1_i4,blat.proc3825150.chain_2408	3
scaffold_4	spliced_intron	13076300	13076428	+	asmbl_41775	none	STRG.4947.3,blat.proc3825166.chain_1381	2	blat.proc3825166.chain_1380	1
scaffold_25	spliced_intron	9503273	9503414	-	asmbl_34503,asmbl_34505	none	STRG.27764.1,blat.proc3825162.chain_1075,blat.proc3825162.chain_1078	3	Trinity_GG_15543_c0_g1_i4,blat.proc3825162.chain_1076	2
scaffold_13	spliced_intron	16138073	16138097	+	asmbl_11555	none	STRG.16653.1	1	STRG.16653.3	1
scaffold_3	retained_intron	19407196	19407473	-	asmbl_39649	none	blat.proc3825150.chain_251	1	STRG.4086.1,STRG.4086.3,STRG.4086.4,blat.proc3825150.chain_250,blat.proc3825150.chain_253	5
scaffold_13	spliced_intron	2507240	2507489	+	asmbl_10620	none	STRG.15559.2,Trinity_GG_25851_c0_g1_i4,blat.proc3825172.chain_285	3	STRG.15559.3,Trinity_GG_25851_c0_g1_i1,Trinity_GG_25851_c0_g1_i2,blat.proc3825172.chain_286,blat.proc3825172.chain_287	5
scaffold_17	alternate_exon	2563456	2565155	+	asmbl_18662,asmbl_18666	none	STRG.20057.1,STRG.20057.2,blat.proc3825174.chain_935	3	Trinity_GG_28293_c0_g2_i2,blat.proc3825174.chain_933	2
scaffold_13	spliced_intron	15751759	15752058	+	asmbl_11539	none	STRG.16624.2	1	Trinity_GG_26444_c0_g1_i1,Trinity_GG_26444_c2_g1_i2,blat.proc3825172.chain_1372,blat.proc3825172.chain_1374	4
scaffold_5	spliced_intron	10853174	10853266	+	asmbl_45699,asmbl_45701,asmbl_45702	none	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	4	blat.proc3825166.chain_2523	1
scaffold_5	starts_in_intron	998128	998128	+	asmbl_45111	none	Trinity_GG_20393_c0_g1_i3,blat.proc3825166.chain_1906	2	STRG.5649.1,Trinity_GG_20393_c0_g1_i1,blat.proc3825166.chain_1908	3
scaffold_8	retained_exon	9866264	9866359	+	asmbl_53117,asmbl_53119,asmbl_53120,asmbl_53121	none	STRG.10233.2,blat.proc3825168.chain_2818,blat.proc3825168.chain_2819,blat.proc3825168.chain_2820,blat.proc3825168.chain_2821	5	blat.proc3825168.chain_2817	1
scaffold_18	starts_in_intron	8866158	8866158	-	asmbl_20025	none	STRG.21549.1,Trinity_GG_11998_c1_g1_i1,blat.proc3825158.chain_2364	3	STRG.21549.2,blat.proc3825158.chain_2354,blat.proc3825158.chain_2355,blat.proc3825158.chain_2358,blat.proc3825158.chain_2359,blat.proc3825158.chain_2360,blat.proc3825158.chain_2361,blat.proc3825158.chain_2362	8
scaffold_18	alternate_exon	6439295	6440019	-	asmbl_19899	none	STRG.21371.1,blat.proc3825158.chain_2312	2	STRG.21371.2	1
scaffold_7	retained_exon	8173614	8173679	+	asmbl_49960	none	STRG.9049.1,blat.proc3825168.chain_1534	2	STRG.9049.2,blat.proc3825168.chain_1535	2
scaffold_21	alternate_exon	402606	403076	-	asmbl_27305	none	Trinity_GG_13226_c0_g1_i6,blat.proc3825160.chain_849	2	STRG.23733.2	1
scaffold_27	starts_in_intron	6603040	6603040	-	asmbl_37066	none	Trinity_GG_16282_c0_g1_i3	1	STRG.29038.1,blat.proc3825162.chain_2259	2
scaffold_4	alt_acceptor	13184627	13184628	-	asmbl_42979	none	STRG.4962.3,blat.proc3825150.chain_1153	2	STRG.4962.1,blat.proc3825150.chain_1156	2
scaffold_12	skipped_exon	1056128	1056993	+	asmbl_7456	none	STRG.14447.3	1	STRG.14447.1,STRG.14447.2,STRG.14447.4,blat.proc3825170.chain_2948	4
scaffold_17	alternate_exon	12200488	12207093	+	asmbl_19278	none	STRG.20759.3,blat.proc3825174.chain_1661	2	STRG.20759.2,Trinity_GG_28712_c2_g1_i1,blat.proc3825174.chain_1666	3
scaffold_7	alt_donor	9816897	9816898	-	asmbl_51077	none	STRG.9180.2,blat.proc3825152.chain_1536	2	STRG.9180.1,blat.proc3825152.chain_1537	2
scaffold_1	starts_in_intron	8426547	8426547	+	asmbl_1933	none	blat.proc3825164.chain_672	1	STRG.552.1	1
scaffold_3	ends_in_intron	7925673	7925673	+	asmbl_40183	none	blat.proc3825164.chain_3659	1	STRG.3380.1,STRG.3380.2,STRG.3380.3	3
scaffold_23	spliced_intron	6289367	6289481	-	asmbl_30967,asmbl_30968,asmbl_30969,asmbl_30971,asmbl_30972	none	STRG.25975.1,STRG.25975.2,Trinity_GG_14564_c0_g1_i1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i5,Trinity_GG_14564_c0_g1_i6,Trinity_GG_14564_c0_g1_i7,blat.proc3825160.chain_3187,blat.proc3825160.chain_3188,blat.proc3825160.chain_3189,blat.proc3825160.chain_3191,blat.proc3825160.chain_3193	12	STRG.25975.3,Trinity_GG_14564_c0_g1_i2,blat.proc3825160.chain_3190,blat.proc3825160.chain_3192	4
scaffold_21	alt_donor	755516	755517	+	asmbl_28303	none	STRG.23772.2	1	STRG.23772.1,Trinity_GG_30485_c0_g1_i2,blat.proc3825176.chain_986,blat.proc3825176.chain_987	4
scaffold_11	retained_intron	13252911	13254374	-	asmbl_7124,asmbl_7127	none	STRG.14198.1,blat.proc3825154.chain_2772,blat.proc3825154.chain_2773	3	STRG.14198.2,STRG.14198.3,blat.proc3825154.chain_2767,blat.proc3825154.chain_2771	4
scaffold_27	alt_donor	1008145	1008146	-	asmbl_36738	none	STRG.28598.2	1	STRG.28598.1,Trinity_GG_15972_c0_g1_i1,blat.proc3825162.chain_1778	3
scaffold_5	starts_in_intron	14132900	14132900	+	asmbl_45905	none	Trinity_GG_20901_c0_g1_i2,blat.proc3825166.chain_2770	2	STRG.6625.1,Trinity_GG_20901_c0_g1_i4,blat.proc3825166.chain_2768	3
scaffold_20	skipped_exon	12113774	12115279	+	asmbl_27116,asmbl_27117	none	STRG.23711.2,blat.proc3825176.chain_857	2	STRG.23711.1,Trinity_GG_30409_c0_g1_i1,Trinity_GG_30409_c0_g1_i3,blat.proc3825176.chain_858,blat.proc3825176.chain_859,blat.proc3825176.chain_860	6
scaffold_11	retained_intron	13035297	13035575	-	asmbl_7115	none	STRG.14179.2,blat.proc3825154.chain_2758	2	STRG.14179.3,blat.proc3825154.chain_2756	2
scaffold_5	alt_acceptor	6190113	6190114	+	asmbl_45410	none	STRG.6033.2,blat.proc3825166.chain_2278	2	STRG.6033.1,blat.proc3825166.chain_2280	2
scaffold_23	retained_intron	10894395	10894488	+	asmbl_31888	none	Trinity_GG_31842_c0_g1_i2,blat.proc3825176.chain_3270	2	blat.proc3825176.chain_3271	1
scaffold_10	starts_in_intron	7671723	7671723	+	asmbl_3293,asmbl_3294	none	STRG.12556.3,STRG.12556.4	2	STRG.12556.2	1
scaffold_1555	alternate_exon	18	478	-	asmbl_15974	none	STRG.30628.2	1	STRG.30628.4	1
scaffold_2131	starts_in_intron	1046	1046	+	asmbl_29044	none	Trinity_GG_34268_c0_g1_i1,blat.proc3825178.chain_3657	2	STRG.30712.1,blat.proc3825178.chain_3658	2
scaffold_18	retained_intron	2535900	2536164	+	asmbl_20411	none	STRG.21124.2	1	STRG.21124.1,Trinity_GG_28917_c0_g1_i1,blat.proc3825174.chain_2023	3
scaffold_4	alternate_exon	12679986	12680048	-	asmbl_42945	none	STRG.4907.2,Trinity_GG_2733_c0_g1_i1,blat.proc3825150.chain_1093	3	STRG.4907.1,blat.proc3825150.chain_1096	2
scaffold_14	spliced_intron	5790911	5791036	-	asmbl_13092,asmbl_13094	none	STRG.17052.1,blat.proc3825156.chain_1795,blat.proc3825156.chain_1796	3	Trinity_GG_9519_c1_g1_i2,blat.proc3825156.chain_1794	2
scaffold_1	alt_acceptor	4590121	4590122	-	asmbl_213	none	STRG.284.3	1	STRG.284.1,STRG.284.2,Trinity_GG_101_c0_g1_i1,blat.proc3825148.chain_171	4
scaffold_16	starts_in_intron	1787370	1787370	-	asmbl_16953	none	blat.proc3825158.chain_257	1	STRG.19103.1,blat.proc3825158.chain_256	2
scaffold_1	ends_in_intron	11175147	11175147	+	asmbl_2083	none	blat.proc3825164.chain_914	1	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_909,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915	10
scaffold_26	spliced_intron	7900294	7900429	+	asmbl_35153	none	STRG.28410.2,Trinity_GG_32991_c0_g1_i3,blat.proc3825178.chain_1456	3	STRG.28410.1,blat.proc3825178.chain_1457,blat.proc3825178.chain_1458	3
scaffold_8	ends_in_intron	17794680	17794680	+	asmbl_53504	none	blat.proc3825168.chain_3228	1	STRG.10695.1,blat.proc3825168.chain_3229	2
scaffold_5	spliced_intron	14261743	14261868	+	asmbl_45916,asmbl_45919,asmbl_45920,asmbl_45921,asmbl_45922,asmbl_45923	none	STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2783,blat.proc3825166.chain_2786,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	6	Trinity_GG_20907_c0_g1_i8,blat.proc3825166.chain_2787	2
scaffold_1	alternate_exon	8762138	8765631	-	asmbl_498	none	STRG.580.1,blat.proc3825148.chain_557	2	STRG.580.2	1
scaffold_11	alt_acceptor	11936507	11936508	-	asmbl_7042	none	STRG.14177.2	1	STRG.14177.3,STRG.14177.4	2
scaffold_19	starts_in_intron	825574	825574	-	asmbl_22008	none	blat.proc3825158.chain_2704	1	STRG.21882.1,blat.proc3825158.chain_2702,blat.proc3825158.chain_2703,blat.proc3825158.chain_2705	4
scaffold_5	alternate_exon	12472110	12472197	-	asmbl_44456	none	STRG.6488.2,blat.proc3825150.chain_2680	2	STRG.6488.1,blat.proc3825150.chain_2681	2
scaffold_14	retained_intron	1715347	1715448	-	asmbl_12914	none	blat.proc3825156.chain_1644	1	STRG.16805.1,Trinity_GG_9425_c0_g1_i1,blat.proc3825156.chain_1645	3
scaffold_25	starts_in_intron	2648337	2648337	+	asmbl_33397	none	blat.proc3825178.chain_349	1	STRG.27228.1,blat.proc3825178.chain_348	2
scaffold_18	ends_in_intron	7029797	7029797	+	asmbl_20703	none	Trinity_GG_29095_c0_g2_i1,blat.proc3825174.chain_2368	2	STRG.21413.1,blat.proc3825174.chain_2367	2
scaffold_23	retained_intron	9886338	9886445	+	asmbl_31805	none	Trinity_GG_31775_c0_g1_i4,blat.proc3825176.chain_3140	2	STRG.26189.1,blat.proc3825176.chain_3137,blat.proc3825176.chain_3139	3
scaffold_8	spliced_intron	16397415	16397527	-	asmbl_52385,asmbl_52387	none	STRG.10626.3,STRG.10626.4,blat.proc3825152.chain_2846,blat.proc3825152.chain_2849	4	STRG.10626.1,STRG.10626.2,blat.proc3825152.chain_2845,blat.proc3825152.chain_2848,blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	6
scaffold_2	alt_donor	4443370	4443371	-	asmbl_23076	none	STRG.1873.2	1	STRG.1873.1,blat.proc3825148.chain_1846	2
scaffold_4	starts_in_intron	7998574	7998574	+	asmbl_41529	none	blat.proc3825166.chain_980	1	STRG.4614.1,blat.proc3825166.chain_979	2
scaffold_9	retained_intron	16628131	16628261	-	asmbl_55597,asmbl_55598	none	STRG.11802.2,STRG.11802.4,blat.proc3825154.chain_260	3	STRG.11802.1,STRG.11802.3	2
scaffold_1	starts_in_intron	12891292	12891292	-	asmbl_778	none	blat.proc3825148.chain_901	1	STRG.921.1,blat.proc3825148.chain_900	2
scaffold_7	ends_in_intron	1402552	1402552	-	asmbl_50726	none	blat.proc3825152.chain_1120	1	STRG.8652.1,blat.proc3825152.chain_1118,blat.proc3825152.chain_1124	3
scaffold_9	alt_donor	6842921	6842922	+	asmbl_54106	none	STRG.11195.1,blat.proc3825168.chain_3742	2	STRG.11195.2,blat.proc3825168.chain_3741	2
scaffold_5	spliced_intron	13316127	13316220	-	asmbl_44537,asmbl_44539	none	STRG.6579.1,blat.proc3825150.chain_2763	2	blat.proc3825150.chain_2764	1
scaffold_5	skipped_exon	4628574	4630113	-	asmbl_43966	none	STRG.5917.2,blat.proc3825150.chain_2104	2	STRG.5917.1,blat.proc3825150.chain_2105	2
scaffold_21	spliced_intron	494987	495125	-	asmbl_27328,asmbl_27329	none	STRG.23744.1,Trinity_GG_13235_c0_g1_i2,Trinity_GG_13235_c0_g1_i6,blat.proc3825160.chain_879,blat.proc3825160.chain_882	5	Trinity_GG_13235_c0_g1_i5,blat.proc3825160.chain_880	2
scaffold_6	alternate_exon	12495507	12503307	+	asmbl_47412,asmbl_47417	none	STRG.8009.1,blat.proc3825168.chain_494,blat.proc3825168.chain_495	3	STRG.8009.4,blat.proc3825168.chain_496	2
scaffold_2	starts_in_intron	15652382	15652382	+	asmbl_25066	none	blat.proc3825164.chain_2803	1	STRG.2519.1,blat.proc3825164.chain_2802	2
scaffold_25	retained_intron	1440431	1440581	+	asmbl_33375,asmbl_33376	none	STRG.27180.1,STRG.27180.2,Trinity_GG_32306_c0_g1_i1,blat.proc3825178.chain_326,blat.proc3825178.chain_327	5	STRG.27180.3	1
scaffold_10	skipped_exon	9003426	9004229	+	asmbl_3354	none	STRG.12646.3	1	STRG.12646.1,STRG.12646.2,blat.proc3825170.chain_1215,blat.proc3825170.chain_1216	4
scaffold_24	spliced_intron	10423260	10423576	+	asmbl_32558,asmbl_32560	none	STRG.27007.1,blat.proc3825178.chain_215,blat.proc3825178.chain_216	3	Trinity_GG_32235_c0_g1_i2,blat.proc3825178.chain_217	2
scaffold_6	retained_intron	6869228	6869357	+	asmbl_47010,asmbl_47011,asmbl_47014	none	STRG.7592.1,STRG.7592.3,blat.proc3825166.chain_3678,blat.proc3825166.chain_3680	4	STRG.7592.2,blat.proc3825166.chain_3679	2
scaffold_5	alternate_exon	11544608	11544767	+	asmbl_45745	none	STRG.6420.1,blat.proc3825166.chain_2537	2	STRG.6420.2	1
scaffold_19	skipped_exon	12255741	12257781	+	asmbl_21773	none	STRG.22553.1,blat.proc3825174.chain_3518	2	STRG.22553.2	1
scaffold_25	alt_donor	7322768	7322769	-	asmbl_34398	none	blat.proc3825178.chain_653	1	STRG.27581.1,STRG.27581.2,STRG.27581.4	3
scaffold_17	ends_in_intron	12387493	12387493	-	asmbl_18331	none	Trinity_GG_11637_c1_g1_i8	1	STRG.20776.3	1
scaffold_4	starts_in_intron	19378587	19378587	+	asmbl_42139	none	Trinity_GG_20347_c0_g1_i1,blat.proc3825166.chain_1815	2	STRG.5525.1,blat.proc3825166.chain_1812,blat.proc3825166.chain_1814	3
scaffold_15	alternate_exon	8986186	8986483	+	asmbl_15375	none	blat.proc3825172.chain_3141	1	STRG.18445.2,blat.proc3825172.chain_3139	2
scaffold_16	alt_donor	3979126	3979127	-	asmbl_17023,asmbl_17024	none	STRG.19215.1,STRG.19215.2,blat.proc3825158.chain_345	3	STRG.19215.3	1
scaffold_16	ends_in_intron	7241236	7241236	-	asmbl_17172	none	blat.proc3825158.chain_479	1	STRG.19399.3	1
scaffold_15	spliced_intron	15502347	15502438	+	asmbl_15799,asmbl_15800,asmbl_15801,asmbl_15803,asmbl_15804	none	STRG.18943.1,STRG.18943.2,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602,blat.proc3825172.chain_3603	9	Trinity_GG_27698_c0_g1_i5,blat.proc3825172.chain_3600	2
scaffold_11	retained_intron	175992	176605	+	asmbl_5265,asmbl_5267	none	blat.proc3825170.chain_1809,blat.proc3825170.chain_1811	2	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	4
scaffold_22	spliced_intron	497867	498066	+	asmbl_29859	none	STRG.24697.3	1	STRG.24697.2	1
scaffold_21	starts_in_intron	7315772	7315772	+	asmbl_28723	none	STRG.24254.2	1	STRG.24254.1,blat.proc3825176.chain_1458	2
scaffold_8	starts_in_intron	3664109	3664109	+	asmbl_52794	none	Trinity_GG_22798_c0_g1_i1,blat.proc3825168.chain_2397	2	STRG.9859.1,blat.proc3825168.chain_2398	2
scaffold_23	alternate_exon	1570798	1570889	-	asmbl_30662	none	STRG.25638.2,Trinity_GG_14351_c1_g1_i2,blat.proc3825160.chain_2825	3	STRG.25638.1,Trinity_GG_14351_c1_g1_i1,blat.proc3825160.chain_2824	3
scaffold_10	spliced_intron	8897598	8897769	-	asmbl_4621,asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632,asmbl_4633	none	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	12	blat.proc3825154.chain_1272	1
scaffold_12	starts_in_intron	12305804	12305804	+	asmbl_7983,asmbl_7984,asmbl_7985	none	STRG.15133.3,blat.proc3825170.chain_3640,blat.proc3825170.chain_3641	3	STRG.15133.1,STRG.15133.2	2
scaffold_8	starts_in_intron	4238788	4238788	-	asmbl_51769	none	blat.proc3825152.chain_2100	1	STRG.9906.1,blat.proc3825152.chain_2101,blat.proc3825152.chain_2102,blat.proc3825152.chain_2104	4
scaffold_11	alt_acceptor	8295681	8295682	+	asmbl_5743	none	STRG.13837.1,Trinity_GG_24926_c0_g1_i2,blat.proc3825170.chain_2364	3	STRG.13837.2	1
scaffold_11	retained_exon	9699752	9699802	-	asmbl_6956	none	Trinity_GG_7828_c1_g1_i1,blat.proc3825154.chain_2535	2	STRG.13992.3,Trinity_GG_7828_c1_g1_i3,blat.proc3825154.chain_2538	3
scaffold_5	starts_in_intron	7280268	7280268	+	asmbl_45483	none	Trinity_GG_20667_c0_g1_i1,blat.proc3825166.chain_2359	2	STRG.6125.1,Trinity_GG_20667_c0_g1_i2,blat.proc3825166.chain_2360	3
scaffold_506	alt_acceptor	4465	4466	+	asmbl_46505	none	STRG.30354.2	1	STRG.30354.1,blat.proc3825178.chain_3450,blat.proc3825178.chain_3451,blat.proc3825178.chain_3453,blat.proc3825178.chain_3454	5
scaffold_18	alt_donor	7944086	7944087	-	asmbl_19988	none	STRG.21493.2	1	STRG.21493.1,STRG.21493.3	2
scaffold_1	retained_exon	12448483	12448552	+	asmbl_2218,asmbl_2220	none	STRG.859.1,STRG.859.2,Trinity_GG_17840_c0_g1_i1,Trinity_GG_17840_c0_g1_i4,blat.proc3825164.chain_1028,blat.proc3825164.chain_1030	6	STRG.859.3,Trinity_GG_17840_c0_g1_i2,Trinity_GG_17840_c0_g1_i6,blat.proc3825164.chain_1029,blat.proc3825164.chain_1031	5
scaffold_21	spliced_intron	7422211	7422334	-	asmbl_27807,asmbl_27808,asmbl_27810,asmbl_27811	none	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	5	blat.proc3825160.chain_1445	1
scaffold_13	alt_donor	10433211	10433212	+	asmbl_11237	none	STRG.16250.3,blat.proc3825172.chain_975	2	STRG.16250.1,STRG.16250.2,STRG.16250.4,blat.proc3825172.chain_976,blat.proc3825172.chain_977	5
scaffold_22	alt_acceptor	6957795	6957796	-	asmbl_29354,asmbl_29355	none	STRG.25024.2,blat.proc3825160.chain_2159	2	STRG.25024.1,STRG.25024.3,STRG.25024.5,blat.proc3825160.chain_2160	4
scaffold_1	retained_intron	11174211	11174990	+	asmbl_2079,asmbl_2080,asmbl_2084,asmbl_2086	none	STRG.747.1,STRG.747.2,blat.proc3825164.chain_909,blat.proc3825164.chain_911,blat.proc3825164.chain_913,blat.proc3825164.chain_915	6	STRG.747.4,STRG.747.5,blat.proc3825164.chain_912	3
scaffold_5	ends_in_intron	6910864	6910864	+	asmbl_45458	none	Trinity_GG_20627_c0_g1_i2,blat.proc3825166.chain_2285	2	STRG.6104.1,STRG.6104.2,blat.proc3825166.chain_2284,blat.proc3825166.chain_2287	4
scaffold_23	starts_in_intron	7685895	7685895	+	asmbl_31717,asmbl_31718	none	Trinity_GG_31727_c0_g1_i3,Trinity_GG_31727_c0_g1_i6,blat.proc3825176.chain_3054,blat.proc3825176.chain_3055	4	STRG.26090.2,STRG.26090.3,STRG.26090.4,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3053	7
scaffold_27	spliced_intron	4799664	4799998	-	asmbl_36970,asmbl_36972	none	STRG.28911.1,STRG.28911.2,Trinity_GG_16198_c0_g1_i2,blat.proc3825162.chain_2139	4	Trinity_GG_16198_c0_g1_i1,blat.proc3825162.chain_2138	2
scaffold_8	alt_acceptor	9903934	9903935	-	asmbl_52064	none	STRG.10243.2,blat.proc3825152.chain_2526	2	STRG.10243.1,Trinity_GG_5719_c0_g1_i2,blat.proc3825152.chain_2525,blat.proc3825152.chain_2527	4
scaffold_23	retained_intron	10975035	10975280	+	asmbl_31894,asmbl_31904	none	STRG.26307.2,Trinity_GG_31796_c0_g1_i8,blat.proc3825176.chain_3180	3	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_13	alt_acceptor	3154869	3154870	+	asmbl_10664	none	STRG.15624.1,blat.proc3825172.chain_400	2	STRG.15624.2	1
scaffold_23	alt_acceptor	316983	316984	-	asmbl_30581	none	STRG.25554.1,blat.proc3825160.chain_2697	2	STRG.25554.2	1
scaffold_24	alt_acceptor	10480377	10480378	+	asmbl_32565	none	STRG.27018.2	1	STRG.27018.1,STRG.27018.3,blat.proc3825178.chain_204,blat.proc3825178.chain_205	4
scaffold_27	alt_donor	5927612	5927613	-	asmbl_37045	none	blat.proc3825162.chain_2239	1	STRG.29001.1,STRG.29001.2,blat.proc3825162.chain_2240	3
scaffold_4	alternate_exon	8983491	8984444	+	asmbl_41599	none	STRG.4711.1,blat.proc3825166.chain_1167	2	STRG.4711.2	1
scaffold_7	alt_acceptor	1513365	1513366	+	asmbl_49612	none	STRG.8645.2	1	STRG.8645.1,Trinity_GG_22057_c0_g1_i1,blat.proc3825168.chain_1132	3
scaffold_4	starts_in_intron	18760666	18760666	+	asmbl_42104	none	Trinity_GG_20303_c0_g1_i1	1	STRG.5462.2,Trinity_GG_20303_c0_g1_i3,blat.proc3825166.chain_1747	3
scaffold_10	ends_in_intron	13523525	13523525	-	asmbl_4897	none	Trinity_GG_7202_c1_g1_i1,blat.proc3825154.chain_1463	2	STRG.12951.1,blat.proc3825154.chain_1460,blat.proc3825154.chain_1461	3
scaffold_14	alt_acceptor	15724462	15724463	-	asmbl_13742,asmbl_13744	none	STRG.17813.1,STRG.17813.2,blat.proc3825156.chain_2625	3	STRG.17813.3	1
scaffold_17	alternate_exon	8648960	8649074	-	asmbl_18111	none	STRG.20484.1	1	STRG.20484.2	1
scaffold_9	starts_in_intron	10063169	10063169	+	asmbl_54276	none	Trinity_GG_23622_c0_g1_i1,blat.proc3825170.chain_105	2	STRG.11367.1,STRG.11367.2,Trinity_GG_23622_c0_g1_i2,Trinity_GG_23622_c0_g1_i3,blat.proc3825170.chain_106,blat.proc3825170.chain_107	6
scaffold_9	alt_acceptor	11842900	11842901	-	asmbl_55325,asmbl_55328,asmbl_55333	none	STRG.11513.1,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660	4	STRG.11513.2	1
scaffold_1	spliced_intron	17729072	17729199	+	asmbl_2534	none	STRG.1245.1	1	blat.proc3825164.chain_1408	1
scaffold_3	skipped_exon	11658956	11660776	+	asmbl_40369,asmbl_40372,asmbl_40373,asmbl_40375	none	STRG.3605.2,STRG.3605.3,STRG.3605.4,Trinity_GG_19349_c0_g1_i6,Trinity_GG_19349_c0_g1_i8,blat.proc3825166.chain_120,blat.proc3825166.chain_121,blat.proc3825166.chain_124	8	STRG.3605.1,STRG.3605.5,Trinity_GG_19349_c0_g1_i3,Trinity_GG_19349_c0_g1_i4,Trinity_GG_19349_c0_g1_i7,blat.proc3825166.chain_119,blat.proc3825166.chain_123,blat.proc3825166.chain_125	8
scaffold_1	retained_exon	11056412	11056528	-	asmbl_603,asmbl_605	none	STRG.723.1,STRG.723.3,blat.proc3825148.chain_696,blat.proc3825148.chain_697	4	STRG.723.2	1
scaffold_5	alt_donor	19354747	19354748	-	asmbl_44899	none	STRG.7034.2,Trinity_GG_3924_c1_g1_i1,blat.proc3825150.chain_3158	3	Trinity_GG_3924_c1_g1_i2,blat.proc3825150.chain_3159	2
scaffold_17	alt_donor	11036071	11036072	-	asmbl_18267	none	STRG.20664.3	1	STRG.20664.1	1
scaffold_14	alternate_exon	8400813	8401138	-	asmbl_13303	none	STRG.17279.1	1	STRG.17279.2,blat.proc3825156.chain_2087,blat.proc3825156.chain_2088	3
scaffold_18	ends_in_intron	348607	348607	+	asmbl_20293	none	STRG.20985.1,blat.proc3825174.chain_1894	2	STRG.20985.2,blat.proc3825174.chain_1892	2
scaffold_29	alt_acceptor	8296	8297	-	asmbl_38629	none	STRG.30013.1,blat.proc3825162.chain_3176	2	STRG.30013.2	1
scaffold_20	alternate_exon	11378244	11378336	+	asmbl_27034,asmbl_27035,asmbl_27036,asmbl_27037,asmbl_27039	none	STRG.23648.1,STRG.23648.2,STRG.23648.3,STRG.23648.4,STRG.23648.5,Trinity_GG_30352_c0_g1_i1,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_757,blat.proc3825176.chain_759	9	STRG.23648.6	1
scaffold_20	skipped_exon	3036350	3037166	+	asmbl_26514	none	STRG.23039.3,Trinity_GG_30010_c0_g1_i1,blat.proc3825176.chain_208	3	STRG.23039.1,STRG.23039.2,blat.proc3825176.chain_209	3
scaffold_8	alt_acceptor	18421773	18421774	+	asmbl_53545	none	STRG.10741.1,blat.proc3825168.chain_3256	2	STRG.10741.2,blat.proc3825168.chain_3257,blat.proc3825168.chain_3258	3
scaffold_15	retained_intron	5454907	5455211	-	asmbl_14210	none	Trinity_GG_10273_c0_g1_i6,blat.proc3825156.chain_3107	2	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	6
scaffold_11	alternate_exon	4686596	4686710	-	asmbl_6617	none	blat.proc3825154.chain_2145	1	STRG.13564.1,STRG.13564.2,STRG.13564.4,STRG.13564.5,blat.proc3825154.chain_2144,blat.proc3825154.chain_2147	6
scaffold_22	starts_in_intron	7578651	7578651	+	asmbl_30198	none	Trinity_GG_31207_c1_g1_i1,blat.proc3825176.chain_2221	2	STRG.25099.1,Trinity_GG_31207_c1_g1_i2,blat.proc3825176.chain_2220	3
scaffold_3	retained_exon	13702786	13702910	+	asmbl_40450	none	STRG.3717.1,blat.proc3825166.chain_222	2	STRG.3717.2,blat.proc3825166.chain_218	2
scaffold_12	alt_donor	7430616	7430617	+	asmbl_7756,asmbl_7757	none	STRG.14827.1,Trinity_GG_25502_c0_g1_i1,Trinity_GG_25502_c0_g1_i2,blat.proc3825170.chain_3366,blat.proc3825170.chain_3367	5	STRG.14827.2	1
scaffold_5	alt_acceptor	13316699	13316700	-	asmbl_44539,asmbl_44540,asmbl_44542	none	blat.proc3825150.chain_2763,blat.proc3825150.chain_2764,blat.proc3825150.chain_2766	3	STRG.6579.1	1
scaffold_1	ends_in_intron	10988218	10988218	+	asmbl_2046	none	blat.proc3825164.chain_847	1	STRG.718.1,blat.proc3825164.chain_845	2
scaffold_5	ends_in_intron	414836	414836	+	asmbl_45098	none	Trinity_GG_20386_c1_g1_i1,blat.proc3825166.chain_1898	2	STRG.5609.1,blat.proc3825166.chain_1897	2
scaffold_11	alt_donor	8096857	8096858	+	asmbl_5721	none	STRG.13822.1,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2347	3	STRG.13822.2,Trinity_GG_24917_c0_g1_i5,blat.proc3825170.chain_2344	3
scaffold_3	retained_exon	8999420	8999513	-	asmbl_39051,asmbl_39052	none	STRG.3431.1,STRG.3431.2	2	blat.proc3825148.chain_3317,blat.proc3825148.chain_3319,blat.proc3825148.chain_3320	3
scaffold_85	alt_acceptor	1302	1303	-	asmbl_53704,asmbl_53705	none	STRG.30130.1,STRG.30130.2,Trinity_GG_28028_c0_g1_i2,blat.proc3825162.chain_3289,blat.proc3825174.chain_490	5	blat.proc3825162.chain_3290,blat.proc3825174.chain_491	2
scaffold_7	alt_donor	3957769	3957770	-	asmbl_50840	none	STRG.8789.1,blat.proc3825152.chain_1271	2	STRG.8789.2	1
scaffold_12	alt_acceptor	14284130	14284131	+	asmbl_8090	none	blat.proc3825172.chain_15	1	STRG.15266.1,blat.proc3825172.chain_16	2
scaffold_11	starts_in_intron	849634	849634	+	asmbl_5305	none	blat.proc3825170.chain_1841	1	STRG.13283.1,Trinity_GG_24616_c0_g1_i5,blat.proc3825170.chain_1840	3
scaffold_6	spliced_intron	11668222	11668463	+	asmbl_47357	none	STRG.7960.2	1	Trinity_GG_21670_c0_g1_i1,blat.proc3825168.chain_406	2
scaffold_22	ends_in_intron	10770602	10770602	-	asmbl_29624	none	Trinity_GG_14200_c0_g1_i1	1	STRG.25417.1	1
scaffold_6	alt_donor	2759888	2759889	+	asmbl_46773	none	STRG.7273.1,blat.proc3825166.chain_3481	2	STRG.7273.2	1
scaffold_11	starts_in_intron	2426367	2426367	-	asmbl_6497	none	blat.proc3825154.chain_1980	1	STRG.13392.1,blat.proc3825154.chain_1979	2
scaffold_8	starts_in_intron	17679696	17679696	-	asmbl_52485	none	Trinity_GG_5890_c0_g1_i3,blat.proc3825152.chain_2841	2	STRG.10687.1,STRG.10687.2,Trinity_GG_5890_c0_g1_i4,Trinity_GG_5890_c0_g1_i6,blat.proc3825152.chain_2839,blat.proc3825152.chain_2840	6
scaffold_3	retained_intron	13988803	13989079	+	asmbl_40475	none	STRG.3744.2,Trinity_GG_19386_c0_g1_i2,blat.proc3825166.chain_190	3	STRG.3744.3,STRG.3744.5,blat.proc3825166.chain_189	3
scaffold_9	starts_in_intron	9475027	9475027	-	asmbl_55180,asmbl_55183	none	STRG.11310.3,blat.proc3825152.chain_3567	2	STRG.11310.1,blat.proc3825152.chain_3569	2
scaffold_18	alt_acceptor	1394505	1394506	-	asmbl_19618	none	STRG.21025.1	1	STRG.21025.2,STRG.21025.3,STRG.21025.4,blat.proc3825158.chain_2003,blat.proc3825158.chain_2005,blat.proc3825158.chain_2006	6
scaffold_7	alt_acceptor	5240418	5240419	+	asmbl_49797	none	STRG.8866.2	1	STRG.8866.1,blat.proc3825168.chain_1363,blat.proc3825168.chain_1364,blat.proc3825168.chain_1365,blat.proc3825168.chain_1366	5
scaffold_2	spliced_intron	8322079	8322426	+	asmbl_24636,asmbl_24637	none	STRG.2119.1,STRG.2119.2,blat.proc3825164.chain_2339,blat.proc3825164.chain_2340	4	Trinity_GG_18527_c0_g1_i2,blat.proc3825164.chain_2338	2
scaffold_11	spliced_intron	9830658	9831678	+	asmbl_5907,asmbl_5908,asmbl_5913	none	STRG.14008.3,STRG.14008.4,blat.proc3825170.chain_2565	3	STRG.14008.1,Trinity_GG_25038_c0_g1_i6,blat.proc3825170.chain_2557,blat.proc3825170.chain_2560	4
scaffold_3	skipped_exon	18376861	18377450	-	asmbl_39622	none	STRG.4043.2	1	STRG.4043.1,blat.proc3825150.chain_222	2
scaffold_4	alt_acceptor	12629642	12629643	-	asmbl_42938,asmbl_42940	none	STRG.4902.2,STRG.4902.3,blat.proc3825150.chain_1038	3	STRG.4902.1,blat.proc3825150.chain_1039,blat.proc3825150.chain_1040	3
scaffold_2	retained_intron	7469205	7469515	-	asmbl_23264,asmbl_23266	none	blat.proc3825148.chain_2058,blat.proc3825148.chain_2064	2	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063	5
scaffold_23	retained_intron	5340412	5340615	-	asmbl_30907,asmbl_30911,asmbl_30913	none	STRG.25911.2,STRG.25911.3,Trinity_GG_14511_c0_g1_i7,blat.proc3825160.chain_3098	4	STRG.25911.1,blat.proc3825160.chain_3097,blat.proc3825160.chain_3099,blat.proc3825160.chain_3100,blat.proc3825160.chain_3101,blat.proc3825160.chain_3102	6
scaffold_3	retained_intron	5951813	5951900	-	asmbl_38885,asmbl_38886	none	blat.proc3825148.chain_3163,blat.proc3825148.chain_3164	2	STRG.3259.1,STRG.3259.2,STRG.3259.3,STRG.3259.4,STRG.3259.5,STRG.3259.6,STRG.3259.7,blat.proc3825148.chain_3161,blat.proc3825148.chain_3162,blat.proc3825148.chain_3165	10
scaffold_21	starts_in_intron	3122338	3122338	-	asmbl_27517	none	blat.proc3825160.chain_1055	1	STRG.23943.1,STRG.23943.2,STRG.23943.3,STRG.23943.4,blat.proc3825160.chain_1056,blat.proc3825160.chain_1057,blat.proc3825160.chain_1058,blat.proc3825160.chain_1059	8
scaffold_12	spliced_intron	14045126	14045217	-	asmbl_8961,asmbl_8963	none	STRG.15234.1,blat.proc3825156.chain_37	2	STRG.15234.3,blat.proc3825156.chain_40	2
scaffold_22	retained_intron	6127007	6127298	+	asmbl_30103	none	blat.proc3825176.chain_2129	1	STRG.24968.1,STRG.24968.4,Trinity_GG_31147_c1_g1_i1,Trinity_GG_31147_c1_g1_i7,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2125,blat.proc3825176.chain_2128,blat.proc3825176.chain_2130,blat.proc3825176.chain_2132	9
scaffold_7	retained_intron	9708727	9708817	-	asmbl_51058	none	STRG.9158.2	1	STRG.9158.1,blat.proc3825152.chain_1494	2
scaffold_5	skipped_exon	12532379	12533784	-	asmbl_44465	none	STRG.6499.2	1	STRG.6499.1,STRG.6499.3,blat.proc3825150.chain_2699	3
scaffold_17	spliced_intron	2533988	2534159	-	asmbl_17756,asmbl_17757,asmbl_17760	none	STRG.20049.1,STRG.20049.2,blat.proc3825158.chain_1072,blat.proc3825158.chain_1073,blat.proc3825158.chain_1074	5	blat.proc3825158.chain_1071	1
scaffold_16	starts_in_intron	9204853	9204853	-	asmbl_17270	none	blat.proc3825158.chain_644	1	STRG.19522.1,blat.proc3825158.chain_645	2
scaffold_7	starts_in_intron	13210717	13210717	+	asmbl_50324	none	blat.proc3825168.chain_1945	1	STRG.9429.2,STRG.9429.3,STRG.9429.4,blat.proc3825168.chain_1943,blat.proc3825168.chain_1944,blat.proc3825168.chain_1946	6
scaffold_19	alt_acceptor	5155499	5155500	+	asmbl_21357	none	STRG.22084.4,blat.proc3825174.chain_3026	2	STRG.22084.1,STRG.22084.3,blat.proc3825174.chain_3027,blat.proc3825174.chain_3028	4
scaffold_7	starts_in_intron	8555699	8555699	+	asmbl_50016	none	Trinity_GG_22353_c0_g1_i1,blat.proc3825168.chain_1602	2	STRG.9081.1,Trinity_GG_22353_c0_g1_i2,blat.proc3825168.chain_1603	3
scaffold_22	alt_donor	6123576	6123577	+	asmbl_30102,asmbl_30110	none	STRG.24968.3,blat.proc3825176.chain_2132	2	STRG.24968.1,STRG.24968.2,Trinity_GG_31147_c1_g1_i3,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2128	5
scaffold_25	retained_intron	6303553	6303774	+	asmbl_33615,asmbl_33616,asmbl_33618	none	blat.proc3825178.chain_555,blat.proc3825178.chain_559,blat.proc3825178.chain_560	3	STRG.27515.1,STRG.27515.2,blat.proc3825178.chain_556,blat.proc3825178.chain_557,blat.proc3825178.chain_558	5
scaffold_18	ends_in_intron	7498058	7498058	-	asmbl_19944	none	Trinity_GG_11961_c0_g1_i1,blat.proc3825158.chain_2289	2	STRG.21449.1,Trinity_GG_11961_c0_g2_i2,blat.proc3825158.chain_2290	3
scaffold_19	retained_intron	8753361	8753752	+	asmbl_21549	none	blat.proc3825174.chain_3314	1	STRG.22336.1,blat.proc3825174.chain_3312	2
scaffold_27	skipped_exon	616486	616959	+	asmbl_35960	none	STRG.28581.1	1	STRG.28581.2,blat.proc3825178.chain_1678	2
scaffold_25	retained_intron	6311974	6313061	-	asmbl_34351	none	Trinity_GG_15440_c0_g1_i1,blat.proc3825162.chain_907	2	STRG.27516.2,blat.proc3825162.chain_906	2
scaffold_12	alternate_exon	11691850	11693415	-	asmbl_8825	none	STRG.15092.1,blat.proc3825154.chain_3613	2	STRG.15092.2,blat.proc3825154.chain_3615	2
scaffold_16	alt_acceptor	8291533	8291534	+	asmbl_16385	none	STRG.19460.1,blat.proc3825174.chain_359	2	STRG.19460.2	1
scaffold_13	retained_exon	366291	366416	-	asmbl_9318	none	STRG.15442.4	1	STRG.15442.3	1
scaffold_10	alt_donor	6867785	6867786	-	asmbl_4506,asmbl_4509,asmbl_4512	none	STRG.12511.1,blat.proc3825154.chain_1142,blat.proc3825154.chain_1144,blat.proc3825154.chain_1147	4	blat.proc3825154.chain_1143,blat.proc3825154.chain_1145	2
scaffold_2	alt_acceptor	2995448	2995449	-	asmbl_22952	none	STRG.1746.2	1	STRG.1746.1	1
scaffold_20	retained_exon	11085819	11085964	-	asmbl_26136	none	STRG.23625.1,Trinity_GG_13173_c0_g1_i1,blat.proc3825160.chain_726	3	Trinity_GG_13173_c0_g1_i2,blat.proc3825160.chain_725	2
scaffold_8	retained_exon	16504948	16506689	-	asmbl_52411,asmbl_52413,asmbl_52414,asmbl_52417,asmbl_52418,asmbl_52421	none	STRG.10629.1,STRG.10629.4,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	7	blat.proc3825152.chain_2932	1
scaffold_4	starts_in_intron	14115610	14115610	-	asmbl_43032	none	blat.proc3825150.chain_1186	1	STRG.5032.1,blat.proc3825150.chain_1185	2
scaffold_8	alt_donor	11263941	11263942	-	asmbl_52139	none	STRG.10336.1	1	STRG.10336.2,blat.proc3825152.chain_2566	2
scaffold_11	retained_intron	1985399	1985437	+	asmbl_5350	none	STRG.13361.1	1	blat.proc3825154.chain_1937	1
scaffold_4	retained_intron	17031495	17031641	+	asmbl_42025	none	blat.proc3825166.chain_1647	1	STRG.5301.2,STRG.5301.3,blat.proc3825166.chain_1650	3
scaffold_14	ends_in_intron	12595737	12595737	+	asmbl_12432	none	STRG.17580.2,blat.proc3825172.chain_2228,blat.proc3825172.chain_2229,blat.proc3825172.chain_2232,blat.proc3825172.chain_2233	5	STRG.17580.1,STRG.17580.3,blat.proc3825172.chain_2230,blat.proc3825172.chain_2231	4
scaffold_12	alternate_exon	4102455	4102700	+	asmbl_7582	none	STRG.14597.1	1	STRG.14597.3	1
scaffold_11	alt_acceptor	3137524	3137525	-	asmbl_6530	none	STRG.13446.1,blat.proc3825154.chain_2026	2	blat.proc3825154.chain_2025	1
scaffold_4	alt_donor	19605327	19605328	-	asmbl_43469,asmbl_43470	none	STRG.5550.1,STRG.5550.2	2	STRG.5550.4	1
scaffold_8	alternate_exon	17765022	17766335	+	asmbl_53498	none	STRG.10691.1,Trinity_GG_23246_c0_g1_i2,blat.proc3825168.chain_3233	3	STRG.10691.2	1
scaffold_1	spliced_intron	10949081	10950931	+	asmbl_2035	none	STRG.715.1,blat.proc3825164.chain_858	2	STRG.715.2,STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_861	4
scaffold_21	spliced_intron	495998	496253	-	asmbl_27328,asmbl_27330	none	STRG.23744.1,Trinity_GG_13235_c0_g1_i2,Trinity_GG_13235_c0_g1_i5,blat.proc3825160.chain_880,blat.proc3825160.chain_882	5	Trinity_GG_13235_c0_g1_i6,blat.proc3825160.chain_879	2
scaffold_14	alt_acceptor	8405893	8405894	-	asmbl_13309,asmbl_13310	none	STRG.17278.3,STRG.17278.4	2	STRG.17278.1,STRG.17278.2,blat.proc3825156.chain_2032	3
scaffold_11	alt_donor	2090204	2090205	+	asmbl_5360	none	STRG.13371.3,blat.proc3825170.chain_1929	2	STRG.13371.1,STRG.13371.2,blat.proc3825170.chain_1927,blat.proc3825170.chain_1928	4
scaffold_27	ends_in_intron	340928	340928	-	asmbl_36675	none	blat.proc3825162.chain_1741	1	STRG.28561.1,STRG.28561.2,STRG.28561.3,blat.proc3825162.chain_1739,blat.proc3825162.chain_1740,blat.proc3825162.chain_1742,blat.proc3825162.chain_1743	7
scaffold_22	spliced_intron	10089893	10089999	+	asmbl_30347	none	STRG.25360.2,Trinity_GG_31305_c0_g1_i2,blat.proc3825176.chain_2370	3	STRG.25360.1,Trinity_GG_31305_c0_g1_i1,blat.proc3825176.chain_2369	3
scaffold_19	alt_acceptor	12957784	12957785	-	asmbl_22568	none	STRG.22612.1	1	Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3404	4
scaffold_12	starts_in_intron	13392321	13392321	-	asmbl_8941	none	STRG.15219.1	1	STRG.15219.2,STRG.15219.3,STRG.15219.4,STRG.15219.5,blat.proc3825156.chain_4,blat.proc3825156.chain_5,blat.proc3825156.chain_6,blat.proc3825156.chain_8	8
scaffold_10	alternate_exon	10284848	10285058	-	asmbl_4711	none	STRG.12719.2,blat.proc3825154.chain_1345	2	STRG.12719.3,Trinity_GG_7121_c0_g1_i1,blat.proc3825154.chain_1346,blat.proc3825154.chain_1348	4
scaffold_11	alt_acceptor	11935482	11935483	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.2,STRG.14177.3	2
scaffold_1	spliced_intron	952977	953543	+	asmbl_1445	none	STRG.50.1,blat.proc3825164.chain_160	2	Trinity_GG_17358_c0_g1_i1,blat.proc3825164.chain_158	2
scaffold_2	starts_in_intron	14249648	14249648	+	asmbl_24896	none	blat.proc3825164.chain_2599	1	STRG.2423.1,blat.proc3825164.chain_2598	2
scaffold_9	alternate_exon	3924644	3924758	+	asmbl_53933	none	STRG.11014.1	1	STRG.11014.2	1
scaffold_2	starts_in_intron	2790038	2790038	-	asmbl_22918	none	blat.proc3825148.chain_1606	1	STRG.1715.1,STRG.1715.2,blat.proc3825148.chain_1603,blat.proc3825148.chain_1604,blat.proc3825148.chain_1605	5
scaffold_10	spliced_intron	3439144	3439233	-	asmbl_4211	none	STRG.12176.2	1	Trinity_GG_6782_c0_g1_i1,blat.proc3825154.chain_722	2
scaffold_16	retained_exon	7097283	7097405	+	asmbl_16323	none	STRG.19387.1,blat.proc3825174.chain_316	2	STRG.19387.2,blat.proc3825174.chain_317	2
scaffold_14	alt_acceptor	2758048	2758049	-	asmbl_12973	none	STRG.16875.2	1	STRG.16875.1,Trinity_GG_9450_c0_g1_i2,blat.proc3825156.chain_1684	3
scaffold_12	alternate_exon	16316452	16316495	-	asmbl_9120	none	blat.proc3825156.chain_240	1	STRG.15386.1,STRG.15386.2,blat.proc3825156.chain_239,blat.proc3825156.chain_241	4
scaffold_10	retained_intron	5390545	5390782	+	asmbl_3168	none	Trinity_GG_24154_c0_g1_i2,blat.proc3825170.chain_1034	2	STRG.12365.2,blat.proc3825170.chain_1032	2
scaffold_17	retained_exon	9973649	9973666	+	asmbl_19142,asmbl_19145	none	STRG.20615.2,blat.proc3825174.chain_1489	2	STRG.20615.3	1
scaffold_2	alt_acceptor	8874367	8874368	+	asmbl_24657	none	STRG.2139.4	1	STRG.2139.2,STRG.2139.3,blat.proc3825164.chain_2328,blat.proc3825164.chain_2331	4
scaffold_8	starts_in_intron	745661	745661	+	asmbl_52664	none	blat.proc3825168.chain_2239	1	STRG.9729.1,blat.proc3825168.chain_2237	2
scaffold_16	starts_in_intron	151525	151525	-	asmbl_16836	none	blat.proc3825158.chain_151	1	STRG.19010.1,Trinity_GG_10685_c0_g1_i3,Trinity_GG_10685_c0_g1_i4,Trinity_GG_10685_c0_g1_i7,Trinity_GG_10685_c0_g1_i8,blat.proc3825158.chain_147,blat.proc3825158.chain_148	7
scaffold_26	skipped_exon	4141762	4142407	+	asmbl_34874	none	STRG.28122.3	1	STRG.28122.2	1
scaffold_28	spliced_intron	4255504	4255598	-	asmbl_38201,asmbl_38203	none	STRG.29622.1,blat.proc3825162.chain_2794,blat.proc3825162.chain_2796	3	blat.proc3825162.chain_2795	1
scaffold_25	ends_in_intron	3292529	3292529	-	asmbl_34124,asmbl_34125,asmbl_34126	none	STRG.27284.6,STRG.27284.7,Trinity_GG_15295_c0_g1_i1,blat.proc3825162.chain_653,blat.proc3825162.chain_658	5	STRG.27284.3,STRG.27284.5,blat.proc3825162.chain_657	3
scaffold_7	alt_acceptor	280390	280391	+	asmbl_49551	none	STRG.8603.1	1	STRG.8603.2,Trinity_GG_22049_c0_g1_i2,Trinity_GG_22049_c0_g1_i3,blat.proc3825168.chain_1111	4
scaffold_3	starts_in_intron	10606915	10606915	-	asmbl_39100	none	blat.proc3825148.chain_3327	1	STRG.3501.1,STRG.3501.2,blat.proc3825148.chain_3328	3
scaffold_6	starts_in_intron	9582343	9582343	-	asmbl_48628	none	blat.proc3825152.chain_173	1	STRG.7809.1,blat.proc3825152.chain_172	2
scaffold_12	alt_donor	4721688	4721689	-	asmbl_8431,asmbl_8432,asmbl_8436	none	STRG.14649.2,STRG.14649.3,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	5	STRG.14649.4	1
scaffold_5	alt_donor	6004105	6004106	-	asmbl_44073	none	STRG.6017.1,blat.proc3825150.chain_2236	2	blat.proc3825150.chain_2235	1
scaffold_28	alternate_exon	5230414	5231709	-	asmbl_38260,asmbl_38262	none	STRG.29674.1,blat.proc3825162.chain_2843,blat.proc3825162.chain_2846	3	Trinity_GG_16632_c0_g1_i2,blat.proc3825162.chain_2845	2
scaffold_19	retained_exon	3548064	3548176	-	asmbl_22113	none	STRG.22044.2,blat.proc3825158.chain_2851	2	STRG.22044.1	1
scaffold_18	alternate_exon	8722950	8725813	-	asmbl_20018	none	STRG.21536.1,blat.proc3825158.chain_2430	2	STRG.21536.2	1
scaffold_6	retained_intron	4319469	4320281	+	asmbl_46877,asmbl_46879,asmbl_46882	none	STRG.7409.1,Trinity_GG_21371_c0_g1_i7,blat.proc3825166.chain_3611,blat.proc3825166.chain_3612,blat.proc3825166.chain_3615	5	STRG.7409.2,blat.proc3825166.chain_3614	2
scaffold_13	starts_in_intron	11792491	11792491	-	asmbl_10105	none	blat.proc3825156.chain_1103	1	STRG.16320.1,blat.proc3825156.chain_1105	2
scaffold_8	retained_intron	17494980	17495324	+	asmbl_53481	none	STRG.10682.2,Trinity_GG_23212_c0_g2_i1,Trinity_GG_23212_c2_g1_i1,blat.proc3825168.chain_3156,blat.proc3825168.chain_3158	5	STRG.10682.4	1
scaffold_9	alt_acceptor	10974981	10974982	+	asmbl_54321	none	blat.proc3825170.chain_244	1	STRG.11407.1,Trinity_GG_23674_c0_g1_i2,blat.proc3825170.chain_245	3
scaffold_27	retained_intron	3872262	3872498	+	asmbl_36227	none	Trinity_GG_33287_c0_g1_i14,blat.proc3825178.chain_2050	2	blat.proc3825178.chain_2040	1
scaffold_2	retained_intron	7240923	7241276	+	asmbl_24553	none	blat.proc3825164.chain_2167	1	STRG.2055.1,blat.proc3825164.chain_2169,blat.proc3825164.chain_2170,blat.proc3825164.chain_2171,blat.proc3825164.chain_2172,blat.proc3825164.chain_2173	6
scaffold_2	starts_in_intron	4326838	4326838	-	asmbl_23063	none	STRG.1862.2,blat.proc3825148.chain_1768	2	STRG.1862.1,blat.proc3825148.chain_1770	2
scaffold_6	alt_acceptor	15945069	15945070	+	asmbl_47681	none	STRG.8324.2	1	STRG.8324.3,STRG.8324.4	2
scaffold_3	retained_intron	4268351	4268565	-	asmbl_38793	none	STRG.3121.1,Trinity_GG_1688_c0_g1_i1,blat.proc3825148.chain_2979	3	STRG.3121.3	1
scaffold_21	retained_intron	6817863	6818183	+	asmbl_28701,asmbl_28704	none	STRG.24217.1,Trinity_GG_30700_c0_g1_i3,blat.proc3825176.chain_1369,blat.proc3825176.chain_1372	4	STRG.24217.2,blat.proc3825176.chain_1370,blat.proc3825176.chain_1371	3
scaffold_17	retained_exon	5097033	5097177	+	asmbl_18811	none	STRG.20239.1,blat.proc3825174.chain_1090	2	STRG.20239.2	1
scaffold_27	ends_in_intron	975119	975119	+	asmbl_35974	none	Trinity_GG_33133_c0_g1_i3,blat.proc3825178.chain_1718	2	STRG.28595.1,STRG.28595.4,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i12,Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1712,blat.proc3825178.chain_1717,blat.proc3825178.chain_1720	8
scaffold_23	alternate_exon	2221234	2221298	-	asmbl_30717	none	STRG.25698.6	1	STRG.25698.1,STRG.25698.2,STRG.25698.3,STRG.25698.5	4
scaffold_15	alternate_exon	8589777	8590102	+	asmbl_15338	none	STRG.18405.2	1	STRG.18405.1,blat.proc3825172.chain_3062	2
scaffold_10	alt_acceptor	381395	381396	-	asmbl_3946,asmbl_3947,asmbl_3948,asmbl_3949,asmbl_3950,asmbl_3951	none	STRG.11922.1,STRG.11922.3,STRG.11922.4,Trinity_GG_6631_c0_g1_i1,Trinity_GG_6631_c0_g1_i4,Trinity_GG_6631_c0_g1_i5,blat.proc3825154.chain_456,blat.proc3825154.chain_457,blat.proc3825154.chain_460,blat.proc3825154.chain_461,blat.proc3825154.chain_462	11	STRG.11922.2,Trinity_GG_6631_c0_g1_i3,blat.proc3825154.chain_459	3
scaffold_24	starts_in_intron	8942486	8942486	-	asmbl_33123	none	blat.proc3825162.chain_288	1	STRG.26915.1,blat.proc3825162.chain_289,blat.proc3825162.chain_290	3
scaffold_2	alt_donor	17951798	17951799	-	asmbl_23764	none	STRG.2687.2	1	STRG.2687.1,blat.proc3825148.chain_2624	2
scaffold_13	ends_in_intron	13818739	13818739	+	asmbl_11409	none	STRG.16437.1,blat.proc3825172.chain_1185,blat.proc3825172.chain_1186	3	STRG.16437.2	1
scaffold_8	alt_donor	4634245	4634246	-	asmbl_51784	none	STRG.9925.2	1	STRG.9925.1	1
scaffold_16	ends_in_intron	6148988	6148988	+	asmbl_16281	none	blat.proc3825174.chain_145	1	STRG.19354.1,blat.proc3825174.chain_141,blat.proc3825174.chain_144	3
scaffold_10	alternate_exon	9061441	9061788	-	asmbl_4671	none	blat.proc3825154.chain_1199	1	STRG.12655.1,STRG.12655.3,blat.proc3825154.chain_1202,blat.proc3825154.chain_1203	4
scaffold_15	starts_in_intron	11409593	11409593	-	asmbl_14506	none	blat.proc3825156.chain_3451	1	STRG.18616.1,blat.proc3825156.chain_3449	2
scaffold_21	starts_in_intron	8526580	8526580	+	asmbl_28818	none	Trinity_GG_30746_c1_g1_i1,blat.proc3825176.chain_1469	2	STRG.24391.1,blat.proc3825176.chain_1459,blat.proc3825176.chain_1461,blat.proc3825176.chain_1465,blat.proc3825176.chain_1467	5
scaffold_20	alternate_exon	7070237	7070384	-	asmbl_25868	none	STRG.23276.2,blat.proc3825160.chain_315	2	STRG.23276.1,blat.proc3825160.chain_314	2
scaffold_13	alternate_exon	6136220	6137466	-	asmbl_9774	none	STRG.15919.2	1	STRG.15919.3,Trinity_GG_8952_c0_g1_i1,blat.proc3825156.chain_808	3
scaffold_4	alt_donor	13195175	13195176	-	asmbl_42983,asmbl_42985	none	STRG.4963.1,STRG.4963.3,blat.proc3825150.chain_1135,blat.proc3825150.chain_1137	4	STRG.4963.2,blat.proc3825150.chain_1136	2
scaffold_13	retained_intron	519849	520155	+	asmbl_10487,asmbl_10489,asmbl_10493	none	STRG.15449.1,blat.proc3825172.chain_179,blat.proc3825172.chain_186,blat.proc3825172.chain_188	4	STRG.15449.2,STRG.15449.4,STRG.15449.5,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_182,blat.proc3825172.chain_183,blat.proc3825172.chain_184	9
scaffold_16	alt_donor	14084594	14084595	-	asmbl_17428	none	blat.proc3825158.chain_843	1	STRG.19807.1	1
scaffold_8	retained_exon	16040335	16040456	-	asmbl_52351	none	STRG.10585.1,blat.proc3825152.chain_2823	2	STRG.10585.2,blat.proc3825152.chain_2822	2
scaffold_22	alt_acceptor	10896639	10896640	-	asmbl_29628	none	STRG.25430.1,blat.proc3825160.chain_2595	2	STRG.25430.2,STRG.25430.3,blat.proc3825160.chain_2594	3
scaffold_13	alt_acceptor	772979	772980	-	asmbl_9372	none	STRG.15463.1,blat.proc3825156.chain_259	2	STRG.15463.2	1
scaffold_18	starts_in_intron	5563760	5563760	-	asmbl_19853,asmbl_19854	none	STRG.21309.2,Trinity_GG_11924_c1_g1_i6,blat.proc3825158.chain_2236	3	STRG.21309.1,STRG.21309.3,Trinity_GG_11924_c1_g1_i1,Trinity_GG_11924_c1_g1_i8,blat.proc3825158.chain_2237,blat.proc3825158.chain_2239	6
scaffold_28	ends_in_intron	3154273	3154273	+	asmbl_37446	none	STRG.29528.2,blat.proc3825178.chain_2716	2	STRG.29528.1,blat.proc3825178.chain_2717	2
scaffold_9	alternate_exon	16564559	16564754	-	asmbl_55587	none	Trinity_GG_6524_c0_g1_i13,blat.proc3825154.chain_265	2	STRG.11806.1,STRG.11806.2,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_271,blat.proc3825154.chain_274	6
scaffold_28	alternate_exon	1159136	1159239	-	asmbl_37977	none	STRG.29323.2,blat.proc3825162.chain_2511	2	STRG.29323.1	1
scaffold_10	ends_in_intron	1628692	1628692	-	asmbl_4073	none	blat.proc3825154.chain_507	1	STRG.12027.1,blat.proc3825154.chain_509,blat.proc3825154.chain_510	3
scaffold_6	alt_donor	2480046	2480047	-	asmbl_48131	none	STRG.7245.3	1	STRG.7245.1,STRG.7245.4,blat.proc3825150.chain_3360,blat.proc3825150.chain_3361	4
scaffold_1	retained_intron	5206637	5207244	+	asmbl_1704	none	STRG.329.2,blat.proc3825164.chain_472	2	STRG.329.1,STRG.329.3,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_476	5
scaffold_21	alt_acceptor	8283329	8283330	-	asmbl_27915	none	STRG.24367.2	1	STRG.24367.1,blat.proc3825160.chain_1531,blat.proc3825160.chain_1532	3
scaffold_22	skipped_exon	10682956	10684527	-	asmbl_29617	none	blat.proc3825160.chain_2610	1	STRG.25415.1,STRG.25415.2,STRG.25415.3	3
scaffold_25	alt_acceptor	2089080	2089081	-	asmbl_34060	none	STRG.27219.1	1	STRG.27219.2,blat.proc3825162.chain_615	2
scaffold_13	starts_in_intron	8699799	8699799	+	asmbl_11141	none	Trinity_GG_26192_c0_g1_i3,blat.proc3825172.chain_935	2	STRG.16140.1,STRG.16140.2,blat.proc3825172.chain_934,blat.proc3825172.chain_936,blat.proc3825172.chain_937	5
scaffold_9	starts_in_intron	2812289	2812289	-	asmbl_54884	none	STRG.10923.3,blat.proc3825152.chain_3171	2	STRG.10923.1	1
scaffold_26	skipped_exon	4142306	4142563	+	asmbl_34872	none	STRG.28122.2	1	STRG.28122.1,STRG.28122.3	2
scaffold_15	alt_acceptor	10766468	10766469	+	asmbl_15463,asmbl_15464,asmbl_15466	none	blat.proc3825172.chain_3210,blat.proc3825172.chain_3212,blat.proc3825172.chain_3216	3	blat.proc3825172.chain_3213	1
scaffold_7	retained_exon	5183287	5183353	-	asmbl_50875	none	STRG.8855.1,blat.proc3825152.chain_1305	2	STRG.8855.3	1
scaffold_12	starts_in_intron	15132051	15132051	-	asmbl_9054	none	STRG.15319.1,blat.proc3825156.chain_126	2	STRG.15319.2,blat.proc3825156.chain_125	2
scaffold_23	spliced_intron	1514785	1514962	-	asmbl_30655	none	STRG.25633.1,blat.proc3825160.chain_2808	2	blat.proc3825160.chain_2809	1
scaffold_14	alt_acceptor	5958794	5958795	-	asmbl_13107	none	STRG.17069.2	1	STRG.17069.1,blat.proc3825156.chain_1863	2
scaffold_14	ends_in_intron	2464402	2464402	-	asmbl_12956	none	Trinity_GG_9452_c1_g1_i1,blat.proc3825156.chain_1690	2	STRG.16856.2,blat.proc3825156.chain_1687	2
scaffold_24	retained_intron	718962	719078	+	asmbl_32037,asmbl_32038	none	STRG.26350.1,Trinity_GG_31885_c0_g1_i4,blat.proc3825176.chain_3338,blat.proc3825176.chain_3339	4	STRG.26350.2,blat.proc3825176.chain_3340	2
scaffold_22	skipped_exon	11475840	11476355	-	asmbl_29680	none	STRG.25494.2	1	STRG.25494.1	1
scaffold_12	alt_acceptor	14131990	14131991	+	asmbl_8053,asmbl_8055	none	STRG.15242.1,STRG.15242.3,blat.proc3825170.chain_3741	3	STRG.15242.2	1
scaffold_28	alt_acceptor	9157365	9157366	+	asmbl_37776	none	STRG.29955.2	1	STRG.29955.1,blat.proc3825178.chain_3107	2
scaffold_7	spliced_intron	12387637	12387722	-	asmbl_51204,asmbl_51205,asmbl_51206,asmbl_51208,asmbl_51210	none	STRG.9338.1,blat.proc3825152.chain_1654,blat.proc3825152.chain_1655,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1661	6	blat.proc3825152.chain_1657,blat.proc3825152.chain_1660	2
scaffold_1	spliced_intron	1420788	1420966	-	asmbl_66	none	STRG.85.1,Trinity_GG_5_c0_g1_i2,blat.proc3825148.chain_9	3	Trinity_GG_5_c0_g1_i3,blat.proc3825148.chain_10	2
scaffold_6	alternate_exon	12970062	12970210	+	asmbl_47459,asmbl_47460,asmbl_47461	none	STRG.8057.1,STRG.8057.2,STRG.8057.3,blat.proc3825168.chain_537,blat.proc3825168.chain_538,blat.proc3825168.chain_539	6	blat.proc3825168.chain_536	1
scaffold_17	alt_acceptor	13196844	13196845	-	asmbl_18362	none	STRG.20817.3,blat.proc3825158.chain_1829	2	STRG.20817.1,STRG.20817.2,blat.proc3825158.chain_1827,blat.proc3825158.chain_1830,blat.proc3825174.chain_1690	5
scaffold_5	alternate_exon	9149299	9149693	+	asmbl_45614	none	STRG.6253.1,blat.proc3825166.chain_2408	2	STRG.6253.2,blat.proc3825166.chain_2409	2
scaffold_24	starts_in_intron	6205495	6205495	+	asmbl_32291	none	blat.proc3825176.chain_3636	1	STRG.26679.1,blat.proc3825176.chain_3637	2
scaffold_18	retained_intron	7682382	7682466	+	asmbl_20774,asmbl_20780,asmbl_20781,asmbl_20784,asmbl_20785	none	STRG.21474.2,STRG.21474.3,Trinity_GG_29179_c0_g1_i14,Trinity_GG_29179_c0_g1_i7,Trinity_GG_29179_c0_g2_i1,blat.proc3825174.chain_2515,blat.proc3825174.chain_2516,blat.proc3825174.chain_2520	8	STRG.21474.4	1
scaffold_14	retained_intron	7508898	7509085	-	asmbl_13218,asmbl_13220	none	STRG.17196.3,blat.proc3825156.chain_1999	2	STRG.17196.1,blat.proc3825156.chain_1996,blat.proc3825156.chain_1998,blat.proc3825156.chain_2000	4
scaffold_28	skipped_exon	7880365	7880912	-	asmbl_38427	none	STRG.29870.1,blat.proc3825162.chain_3029	2	blat.proc3825162.chain_3026	1
scaffold_23	retained_exon	10323928	10324071	-	asmbl_31145	none	STRG.26236.1,blat.proc3825160.chain_3369	2	STRG.26236.2,blat.proc3825160.chain_3370	2
scaffold_5	retained_exon	14261869	14261931	+	asmbl_45916	none	blat.proc3825166.chain_2786	1	STRG.6638.1,STRG.6638.2,blat.proc3825166.chain_2785,blat.proc3825166.chain_2788	4
scaffold_20	alt_donor	6308080	6308081	-	asmbl_25836	none	STRG.23228.1,blat.proc3825160.chain_328	2	STRG.23228.2	1
scaffold_9	alt_donor	13297315	13297316	-	asmbl_55422	none	STRG.11628.2	1	STRG.11628.1,STRG.11628.3,STRG.11628.5	3
scaffold_1	spliced_intron	14320880	14321243	+	asmbl_2382	none	blat.proc3825164.chain_1225	1	blat.proc3825164.chain_1226	1
scaffold_14	alt_acceptor	2271037	2271038	-	asmbl_12932	none	STRG.16837.1	1	STRG.16837.2	1
scaffold_14	alt_acceptor	15565917	15565918	+	asmbl_12621	none	blat.proc3825172.chain_2534	1	STRG.17796.1,STRG.17796.2,STRG.17796.3,blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	6
scaffold_10	alt_acceptor	16532558	16532559	+	asmbl_3718,asmbl_3719	none	STRG.13128.1,blat.proc3825170.chain_1651,blat.proc3825170.chain_1653	3	STRG.13128.3	1
scaffold_8	retained_intron	16501928	16502016	-	asmbl_52410	none	Trinity_GG_5934_c0_g1_i14,blat.proc3825152.chain_2927	2	STRG.10629.1,STRG.10629.2,STRG.10629.3,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2928,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2932,blat.proc3825152.chain_2933,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939,blat.proc3825152.chain_2941	14
scaffold_14	retained_exon	14143477	14143575	+	asmbl_12526,asmbl_12527	none	STRG.17687.2,STRG.17687.4	2	STRG.17687.1,STRG.17687.3,blat.proc3825172.chain_2357,blat.proc3825172.chain_2359	4
scaffold_1	skipped_exon	12466110	12468409	-	asmbl_718,asmbl_719,asmbl_720	none	STRG.867.1,STRG.867.2,STRG.867.5	3	STRG.867.3	1
scaffold_21	spliced_intron	5536369	5536490	-	asmbl_27674,asmbl_27675,asmbl_27676	none	STRG.24086.1,blat.proc3825160.chain_1271,blat.proc3825160.chain_1275	3	STRG.24086.2,Trinity_GG_13445_c0_g1_i9,blat.proc3825160.chain_1274,blat.proc3825160.chain_1277	4
scaffold_10	spliced_intron	8908482	8908686	+	asmbl_3337	none	blat.proc3825170.chain_1226	1	STRG.12636.1,STRG.12636.2,blat.proc3825170.chain_1225,blat.proc3825170.chain_1227	4
scaffold_1	alt_acceptor	4270585	4270586	+	asmbl_1658,asmbl_1660	none	STRG.261.1,STRG.261.3,blat.proc3825164.chain_398	3	STRG.261.2	1
scaffold_13	ends_in_intron	7667238	7667238	+	asmbl_11068	none	STRG.16051.1	1	blat.proc3825172.chain_782	1
scaffold_18	ends_in_intron	4467262	4467262	+	asmbl_20525	none	blat.proc3825174.chain_2191	1	STRG.21238.1,STRG.21238.2,blat.proc3825174.chain_2189,blat.proc3825174.chain_2190	4
scaffold_5	ends_in_intron	3935915	3935915	-	asmbl_43934	none	STRG.5864.1	1	STRG.5863.2	1
scaffold_27	ends_in_intron	627069	627069	-	asmbl_36704,asmbl_36705	none	Trinity_GG_15996_c0_g1_i1,Trinity_GG_15996_c0_g1_i5,blat.proc3825162.chain_1826,blat.proc3825162.chain_1828	4	STRG.28583.1,STRG.28583.2,STRG.28583.4,blat.proc3825162.chain_1824,blat.proc3825162.chain_1827	5
scaffold_1	alternate_exon	20733012	20733100	-	asmbl_1197	none	STRG.1417.1,blat.proc3825148.chain_1394	2	STRG.1417.2,blat.proc3825148.chain_1393	2
scaffold_8	spliced_intron	9903716	9903809	-	asmbl_52063,asmbl_52064,asmbl_52066	none	STRG.10243.1,STRG.10243.2,Trinity_GG_5719_c0_g1_i2,blat.proc3825152.chain_2525,blat.proc3825152.chain_2526,blat.proc3825152.chain_2527	6	Trinity_GG_5719_c0_g1_i4,blat.proc3825152.chain_2523	2
scaffold_23	alternate_exon	2208940	2222393	-	asmbl_30716	none	STRG.25698.3	1	STRG.25698.4	1
scaffold_12	alternate_exon	16315084	16315432	-	asmbl_9117	none	STRG.15386.2,Trinity_GG_8634_c1_g1_i2,blat.proc3825156.chain_242	3	blat.proc3825156.chain_239,blat.proc3825156.chain_240,blat.proc3825156.chain_241	3
scaffold_14	alt_acceptor	11665576	11665577	-	asmbl_13511,asmbl_13514	none	STRG.17511.2,blat.proc3825156.chain_2307,blat.proc3825156.chain_2310	3	STRG.17511.1,blat.proc3825156.chain_2308,blat.proc3825156.chain_2309	3
scaffold_12	alt_acceptor	4613101	4613102	-	asmbl_8412,asmbl_8413,asmbl_8416,asmbl_8418,asmbl_8419	none	STRG.14639.1,STRG.14639.2,blat.proc3825154.chain_3136,blat.proc3825154.chain_3138,blat.proc3825154.chain_3139,blat.proc3825154.chain_3140,blat.proc3825154.chain_3142	7	STRG.14639.4	1
scaffold_1	skipped_exon	13129025	13129359	-	asmbl_799	none	blat.proc3825148.chain_915	1	STRG.955.1,blat.proc3825148.chain_913,blat.proc3825148.chain_914	3
scaffold_21	starts_in_intron	7490947	7490947	+	asmbl_28742	none	blat.proc3825176.chain_1493	1	STRG.24280.1,blat.proc3825176.chain_1494	2
scaffold_18	spliced_intron	4574673	4575183	+	asmbl_20531,asmbl_20532,asmbl_20534	none	STRG.21248.1,STRG.21248.2,blat.proc3825174.chain_2216,blat.proc3825174.chain_2217,blat.proc3825174.chain_2219	5	blat.proc3825174.chain_2218	1
scaffold_1	retained_intron	4225778	4226020	+	asmbl_1644	none	blat.proc3825164.chain_380	1	STRG.254.2,blat.proc3825164.chain_378,blat.proc3825164.chain_381	3
scaffold_14	alt_acceptor	11076259	11076260	-	asmbl_13444,asmbl_13445	none	STRG.17446.2,STRG.17446.3,blat.proc3825156.chain_2240	3	STRG.17446.1	1
scaffold_7	alternate_exon	18394449	18394963	-	asmbl_51468	none	STRG.9670.1,blat.proc3825152.chain_2016	2	Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2014,blat.proc3825152.chain_2017	4
scaffold_5	ends_in_intron	13244735	13244735	+	asmbl_45871	none	Trinity_GG_20890_c1_g1_i1,blat.proc3825166.chain_2752	2	STRG.6568.1,STRG.6568.2,STRG.6568.3,blat.proc3825166.chain_2749,blat.proc3825166.chain_2750,blat.proc3825166.chain_2751	6
scaffold_17	alt_acceptor	13610511	13610512	+	asmbl_19339	none	STRG.20835.2	1	STRG.20835.1	1
scaffold_18	alt_donor	3217943	3217944	-	asmbl_19753	none	STRG.21159.1,Trinity_GG_11855_c0_g1_i1,blat.proc3825158.chain_2130	3	STRG.21159.2,Trinity_GG_11855_c0_g1_i2,blat.proc3825158.chain_2129	3
scaffold_22	starts_in_intron	5997584	5997584	+	asmbl_30081	none	blat.proc3825176.chain_2067	1	blat.proc3825176.chain_2068	1
scaffold_6	retained_intron	15762521	15764191	-	asmbl_49081,asmbl_49084,asmbl_49085	none	STRG.8318.3,blat.proc3825152.chain_757,blat.proc3825152.chain_759	3	STRG.8318.1,STRG.8318.2,blat.proc3825152.chain_758	3
scaffold_8	spliced_intron	12693269	12693431	+	asmbl_53325,asmbl_53326,asmbl_53330,asmbl_53331	none	blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3011	4	blat.proc3825168.chain_3010	1
scaffold_21	retained_exon	5519925	5520018	-	asmbl_27662	none	STRG.24083.3	1	STRG.24083.1	1
scaffold_1	alternate_exon	12166139	12170872	+	asmbl_2184,asmbl_2187	none	blat.proc3825164.chain_1006,blat.proc3825164.chain_1008	2	STRG.838.1	1
scaffold_6	ends_in_intron	5017985	5017985	-	asmbl_48384	none	Trinity_GG_4199_c0_g1_i1,Trinity_GG_4199_c0_g1_i2,blat.proc3825150.chain_3599,blat.proc3825150.chain_3600	4	STRG.7474.2	1
scaffold_3	skipped_exon	18154089	18156850	-	asmbl_39598,asmbl_39599	none	STRG.4025.3,STRG.4025.4	2	STRG.4025.1,STRG.4025.2,blat.proc3825150.chain_205,blat.proc3825150.chain_206	4
scaffold_3	alternate_exon	16146522	16146714	-	asmbl_39485	none	STRG.3902.2,blat.proc3825150.chain_82	2	STRG.3902.3,blat.proc3825150.chain_81	2
scaffold_11	spliced_intron	4745326	4745491	-	asmbl_6622,asmbl_6623,asmbl_6624,asmbl_6626,asmbl_6627	none	STRG.13567.1,STRG.13567.2,blat.proc3825154.chain_2162,blat.proc3825154.chain_2163,blat.proc3825154.chain_2165,blat.proc3825154.chain_2166,blat.proc3825154.chain_2167	7	blat.proc3825154.chain_2164	1
scaffold_5	alt_donor	939512	939513	-	asmbl_43793	none	STRG.5640.3	1	STRG.5640.2	1
scaffold_13	spliced_intron	5208212	5208652	+	asmbl_10832	none	STRG.15826.2	1	Trinity_GG_26004_c0_g1_i2,blat.proc3825172.chain_552	2
scaffold_16	retained_intron	7910628	7911984	+	asmbl_16362	none	blat.proc3825174.chain_283	1	STRG.19445.1,Trinity_GG_27913_c0_g1_i1,blat.proc3825174.chain_282	3
scaffold_21	ends_in_intron	7325092	7325092	-	asmbl_27799	none	blat.proc3825160.chain_1404	1	STRG.24258.1,blat.proc3825160.chain_1403,blat.proc3825160.chain_1405,blat.proc3825160.chain_1406	4
scaffold_14	alt_acceptor	2271052	2271053	-	asmbl_12931	none	STRG.16837.2	1	STRG.16837.1	1
scaffold_3	skipped_exon	15784164	15787002	-	asmbl_39450	none	STRG.3859.3	1	STRG.3859.1,STRG.3859.2,blat.proc3825148.chain_3733	3
scaffold_3	ends_in_intron	7592905	7592905	+	asmbl_40166	none	blat.proc3825164.chain_3631	1	STRG.3351.1,Trinity_GG_19221_c0_g1_i1,blat.proc3825164.chain_3626,blat.proc3825164.chain_3629,blat.proc3825164.chain_3630	5
scaffold_7	retained_intron	13889999	13890106	+	asmbl_50383	none	STRG.9487.2	1	STRG.9487.1,Trinity_GG_22588_c0_g1_i1,blat.proc3825168.chain_2017	3
scaffold_17	starts_in_intron	8876511	8876511	+	asmbl_19039	none	Trinity_GG_28547_c0_g1_i2,blat.proc3825174.chain_1364	2	STRG.20506.1,STRG.20506.2,blat.proc3825174.chain_1363,blat.proc3825174.chain_1365	4
scaffold_1	spliced_intron	11173731	11174990	+	asmbl_2082,asmbl_2083	none	STRG.747.3,blat.proc3825164.chain_914	2	STRG.747.1,blat.proc3825164.chain_909,blat.proc3825164.chain_913,blat.proc3825164.chain_915	4
scaffold_9	ends_in_intron	9637811	9637811	-	asmbl_55225	none	Trinity_GG_6250_c0_g1_i1,blat.proc3825152.chain_3522	2	STRG.11335.1,Trinity_GG_6250_c0_g2_i1,blat.proc3825152.chain_3525	3
scaffold_9	retained_intron	17743121	17743198	+	asmbl_54642	none	blat.proc3825170.chain_566	1	STRG.11863.1,blat.proc3825170.chain_563,blat.proc3825170.chain_565,blat.proc3825170.chain_567	4
scaffold_8	spliced_intron	4783781	4783869	-	asmbl_51797	none	STRG.9942.1,blat.proc3825152.chain_2218	2	blat.proc3825152.chain_2219	1
scaffold_7	retained_exon	7416484	7417321	+	asmbl_49919	none	STRG.8994.2,Trinity_GG_22293_c0_g1_i1,blat.proc3825168.chain_1499	3	STRG.8994.1,blat.proc3825168.chain_1498	2
scaffold_21	spliced_intron	3824094	3824282	-	asmbl_27548	none	STRG.23974.4,blat.proc3825160.chain_1118	2	STRG.23974.2,STRG.23974.3,blat.proc3825160.chain_1116,blat.proc3825160.chain_1119	4
scaffold_14	alternate_exon	8400813	8401055	-	asmbl_13302	none	STRG.17279.3,blat.proc3825156.chain_2084	2	STRG.17279.2,blat.proc3825156.chain_2087,blat.proc3825156.chain_2088	3
scaffold_28	alt_donor	4202584	4202585	+	asmbl_37527	none	STRG.29616.3	1	STRG.29616.1,STRG.29616.2,Trinity_GG_33739_c0_g1_i8,blat.proc3825178.chain_2811	4
scaffold_14	alt_acceptor	15946938	15946939	+	asmbl_12655	none	STRG.17840.2,blat.proc3825172.chain_2563	2	STRG.17840.1,STRG.17840.3,blat.proc3825172.chain_2565,blat.proc3825172.chain_2566	4
scaffold_2	alt_acceptor	14449301	14449302	-	asmbl_23600	none	STRG.2451.1,blat.proc3825148.chain_2352	2	blat.proc3825148.chain_2351	1
scaffold_4	ends_in_intron	16804027	16804027	-	asmbl_43217	none	blat.proc3825150.chain_1430	1	STRG.5268.1,STRG.5268.2,blat.proc3825150.chain_1428	3
scaffold_3	alternate_exon	19824480	19824664	-	asmbl_39660,asmbl_39661	none	STRG.4096.2,STRG.4096.3,Trinity_GG_2255_c0_g1_i2,blat.proc3825150.chain_268	4	STRG.4096.1,Trinity_GG_2255_c0_g1_i1,Trinity_GG_2255_c0_g1_i3,blat.proc3825150.chain_269,blat.proc3825150.chain_270	5
scaffold_28	ends_in_intron	2723109	2723109	+	asmbl_37410	none	blat.proc3825178.chain_2682	1	STRG.29459.1,STRG.29459.2,STRG.29459.3,blat.proc3825178.chain_2681,blat.proc3825178.chain_2684	5
scaffold_26	spliced_intron	3673200	3673300	+	asmbl_34808,asmbl_34809,asmbl_34810,asmbl_34811	none	STRG.28048.1,blat.proc3825178.chain_1108,blat.proc3825178.chain_1110,blat.proc3825178.chain_1111,blat.proc3825178.chain_1112	5	blat.proc3825178.chain_1106	1
scaffold_1	spliced_intron	20132580	20132927	+	asmbl_2608	none	STRG.1380.1,Trinity_GG_18065_c0_g1_i1,blat.proc3825164.chain_1417	3	Trinity_GG_18065_c0_g1_i2,Trinity_GG_18065_c0_g1_i5,blat.proc3825164.chain_1418,blat.proc3825164.chain_1419	4
scaffold_16	alt_donor	2386381	2386382	-	asmbl_16965	none	STRG.19133.2	1	STRG.19133.3	1
scaffold_3	retained_exon	14807664	14807675	-	asmbl_39430	none	blat.proc3825150.chain_24	1	STRG.3824.2,blat.proc3825150.chain_23	2
scaffold_3	alt_acceptor	15784691	15784692	-	asmbl_39449,asmbl_39451,asmbl_39452	none	STRG.3859.1,STRG.3859.2,blat.proc3825148.chain_3732,blat.proc3825148.chain_3733	4	STRG.3859.3	1
scaffold_14	starts_in_intron	16125574	16125574	-	asmbl_13773	none	blat.proc3825156.chain_2652	1	STRG.17857.1,blat.proc3825152.chain_1177,blat.proc3825156.chain_2653,blat.proc3825156.chain_2654	4
scaffold_1	starts_in_intron	8648611	8648611	-	asmbl_474	none	Trinity_GG_322_c1_g1_i1,blat.proc3825148.chain_587	2	STRG.569.1,STRG.569.2	2
scaffold_14	retained_exon	1376332	1376480	-	asmbl_12875,asmbl_12876,asmbl_12878	none	STRG.16791.1,STRG.16791.2,blat.proc3825156.chain_1624,blat.proc3825156.chain_1625	4	blat.proc3825156.chain_1626	1
scaffold_11	retained_intron	15655831	15655930	-	asmbl_7197,asmbl_7198	none	blat.proc3825154.chain_2863,blat.proc3825154.chain_2868	2	STRG.14308.1,STRG.14308.2,blat.proc3825154.chain_2859,blat.proc3825154.chain_2860,blat.proc3825154.chain_2861,blat.proc3825154.chain_2865,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867	8
scaffold_4	alt_acceptor	4112610	4112611	-	asmbl_42481	none	STRG.4317.2,blat.proc3825150.chain_482	2	STRG.4317.1,blat.proc3825150.chain_476	2
scaffold_12	alternate_exon	13393932	13396504	-	asmbl_8940	none	blat.proc3825156.chain_8	1	STRG.15219.2	1
scaffold_10	alt_acceptor	8464041	8464042	-	asmbl_4590	none	STRG.12603.2,blat.proc3825154.chain_1209	2	STRG.12603.1,blat.proc3825154.chain_1210	2
scaffold_8	retained_exon	11463927	11464005	+	asmbl_53226	none	STRG.10352.3,blat.proc3825168.chain_2931	2	STRG.10352.1,blat.proc3825168.chain_2932	2
scaffold_8	alt_donor	12717298	12717299	+	asmbl_53339	none	STRG.10448.1,blat.proc3825168.chain_3038	2	STRG.10448.2,blat.proc3825168.chain_3037	2
scaffold_14	retained_intron	9273608	9273885	-	asmbl_13365,asmbl_13367	none	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203	2	STRG.17338.2	1
scaffold_4	retained_intron	12711355	12711630	+	asmbl_41738	none	STRG.4912.3,Trinity_GG_20041_c0_g1_i1,blat.proc3825166.chain_1324	3	blat.proc3825166.chain_1323	1
scaffold_2	alternate_exon	8055586	8055809	-	asmbl_23303	none	STRG.2094.2,blat.proc3825148.chain_2119	2	STRG.2094.3,Trinity_GG_1165_c1_g1_i1	2
scaffold_3	alt_acceptor	17696711	17696712	+	asmbl_40690	none	STRG.3991.1	1	STRG.3991.2,blat.proc3825166.chain_441	2
scaffold_11	alternate_exon	12918033	12918085	-	asmbl_7109	none	STRG.14176.3	1	STRG.14176.2,blat.proc3825154.chain_2722	2
scaffold_11	alt_acceptor	2855116	2855117	+	asmbl_5389	none	STRG.13418.2	1	STRG.13418.1,Trinity_GG_24636_c0_g1_i3,blat.proc3825170.chain_1875	3
scaffold_1	skipped_exon	18028928	18029644	-	asmbl_1075	none	STRG.1268.5	1	STRG.1268.7	1
scaffold_1	spliced_intron	13538442	13538687	-	asmbl_821,asmbl_822	none	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_933	5	blat.proc3825148.chain_931	1
scaffold_7	alt_acceptor	18392945	18392946	-	asmbl_51468,asmbl_51470,asmbl_51473,asmbl_51475,asmbl_51480	none	STRG.9670.1,STRG.9670.2,STRG.9670.3,Trinity_GG_5439_c0_g1_i1,blat.proc3825152.chain_2012,blat.proc3825152.chain_2016,blat.proc3825152.chain_2020	7	STRG.9670.4,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i3,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2013,blat.proc3825152.chain_2014,blat.proc3825152.chain_2015,blat.proc3825152.chain_2017,blat.proc3825152.chain_2018,blat.proc3825152.chain_2021	14
scaffold_7	starts_in_intron	12073391	12073391	-	asmbl_51186	none	blat.proc3825152.chain_1645	1	STRG.9313.1,blat.proc3825152.chain_1644	2
scaffold_19	retained_intron	2781526	2781716	+	asmbl_21280	none	blat.proc3825174.chain_2998	1	STRG.21962.1,STRG.21962.2,STRG.21962.3,STRG.21962.4,STRG.21962.5	5
scaffold_18	alternate_exon	13438982	13439245	+	asmbl_21017	none	STRG.21786.2,Trinity_GG_29340_c2_g1_i1,blat.proc3825174.chain_2793	3	STRG.21786.1,Trinity_GG_29340_c0_g2_i1,blat.proc3825174.chain_2792	3
scaffold_15	retained_intron	14323219	14324235	-	asmbl_14712,asmbl_14718	none	Trinity_GG_10597_c0_g1_i3,Trinity_GG_10597_c0_g1_i4,blat.proc3825156.chain_3718	3	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2
scaffold_7	retained_intron	7789092	7789283	-	asmbl_50974,asmbl_50975	none	Trinity_GG_5091_c0_g1_i2,Trinity_GG_5091_c0_g1_i5,Trinity_GG_5091_c0_g1_i8,blat.proc3825152.chain_1414,blat.proc3825152.chain_1416,blat.proc3825152.chain_1418	6	STRG.9034.1,STRG.9034.2,Trinity_GG_5091_c0_g1_i4,Trinity_GG_5091_c0_g1_i7,blat.proc3825152.chain_1415,blat.proc3825152.chain_1417	6
scaffold_4	skipped_exon	3229649	3230889	-	asmbl_42416,asmbl_42419	none	STRG.4248.1,blat.proc3825150.chain_458	2	STRG.4248.2	1
scaffold_9	alternate_exon	3674740	3675058	-	asmbl_54924	none	Trinity_GG_6077_c0_g2_i2	1	STRG.10993.1,STRG.10993.4,STRG.10993.5,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	7
scaffold_9	alt_donor	16384828	16384829	+	asmbl_54593	none	STRG.11792.2,blat.proc3825170.chain_588	2	STRG.11792.1,blat.proc3825170.chain_587	2
scaffold_6	skipped_exon	18922318	18922987	-	asmbl_49294	none	STRG.8564.3	1	STRG.8564.1,blat.proc3825152.chain_993	2
scaffold_3	alt_donor	19407398	19407399	-	asmbl_39651	none	STRG.4086.2	1	STRG.4086.1,STRG.4086.3,STRG.4086.4,blat.proc3825150.chain_250,blat.proc3825150.chain_253	5
scaffold_5	retained_exon	9811654	9811724	+	asmbl_45647	none	STRG.6299.2,blat.proc3825166.chain_2499	2	STRG.6299.1,blat.proc3825166.chain_2501	2
scaffold_18	alt_acceptor	3733168	3733169	-	asmbl_19765	none	STRG.21185.1,blat.proc3825158.chain_2162	2	STRG.21185.2,blat.proc3825158.chain_2161	2
scaffold_5	starts_in_intron	12518024	12518024	-	asmbl_44461	none	STRG.6489.2	1	STRG.6489.1,blat.proc3825150.chain_2655	2
scaffold_18	alt_acceptor	7185322	7185323	+	asmbl_20714	none	STRG.21422.2	1	STRG.21422.1,STRG.21422.3,Trinity_GG_29133_c0_g1_i1,blat.proc3825174.chain_2426	4
scaffold_7	alt_acceptor	15551499	15551500	-	asmbl_51377	none	STRG.9557.1	1	STRG.9557.2	1
scaffold_4	skipped_exon	6280167	6283128	-	asmbl_42671	none	Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_778	2	STRG.4498.1,STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i1,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i7,blat.proc3825150.chain_773,blat.proc3825150.chain_774,blat.proc3825150.chain_775,blat.proc3825150.chain_779	10
scaffold_12	retained_exon	11915921	11916018	-	asmbl_8836	none	STRG.15103.2	1	STRG.15103.1,Trinity_GG_8439_c0_g1_i2,blat.proc3825154.chain_3623	3
scaffold_5	alt_acceptor	1548461	1548462	-	asmbl_43860	none	STRG.5712.2	1	STRG.5712.1	1
scaffold_21	alternate_exon	7928459	7928624	+	asmbl_28772	none	STRG.24330.4,blat.proc3825176.chain_1543	2	STRG.24330.3,blat.proc3825176.chain_1544	2
scaffold_8	starts_in_intron	13144398	13144398	-	asmbl_52271	none	blat.proc3825152.chain_2728	1	blat.proc3825152.chain_2724,blat.proc3825152.chain_2725,blat.proc3825152.chain_2726,blat.proc3825152.chain_2727	4
scaffold_27	alternate_exon	3092523	3092591	-	asmbl_36894	none	blat.proc3825162.chain_2066	1	STRG.28796.2,STRG.28796.4,STRG.28796.5,STRG.28796.6,blat.proc3825162.chain_2065,blat.proc3825162.chain_2068	6
scaffold_12	retained_intron	14171917	14172236	+	asmbl_8066	none	Trinity_GG_25713_c0_g1_i9,blat.proc3825172.chain_5	2	STRG.15252.2,blat.proc3825172.chain_3	2
scaffold_26	retained_intron	9772970	9773112	+	asmbl_35256,asmbl_35259,asmbl_35261,asmbl_35262,asmbl_35263,asmbl_35265,asmbl_35266,asmbl_35267	none	STRG.28516.1,STRG.28516.2,STRG.28516.3,STRG.28516.5,STRG.28516.7,Trinity_GG_33086_c0_g1_i6,blat.proc3825178.chain_1636,blat.proc3825178.chain_1637,blat.proc3825178.chain_1638,blat.proc3825178.chain_1639,blat.proc3825178.chain_1641	11	STRG.28516.4,STRG.28516.6,blat.proc3825178.chain_1640,blat.proc3825178.chain_1642	4
scaffold_9	alt_acceptor	8583839	8583840	+	asmbl_54177	none	STRG.11268.1	1	STRG.11268.3	1
scaffold_11	alternate_exon	13651633	13651672	-	asmbl_7151	none	STRG.14222.2,blat.proc3825154.chain_2706	2	STRG.14222.1,blat.proc3825154.chain_2707	2
scaffold_20	alt_acceptor	9540951	9540952	-	asmbl_26042	none	STRG.23490.2,Trinity_GG_13070_c0_g1_i2,blat.proc3825160.chain_524	3	STRG.23490.1,Trinity_GG_13070_c0_g1_i1,blat.proc3825160.chain_523	3
scaffold_16	starts_in_intron	125086	125086	+	asmbl_15998,asmbl_15999	none	Trinity_GG_27742_c0_g1_i1,Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3682,blat.proc3825172.chain_3684	4	STRG.19007.1,STRG.19007.2,Trinity_GG_27742_c0_g1_i2,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3683,blat.proc3825172.chain_3685	6
scaffold_24	ends_in_intron	8955026	8955026	+	asmbl_32461	none	Trinity_GG_32185_c0_g1_i3,blat.proc3825178.chain_103	2	STRG.26917.1,STRG.26917.2,Trinity_GG_32185_c0_g1_i1,blat.proc3825178.chain_102,blat.proc3825178.chain_104	5
scaffold_2	ends_in_intron	16413748	16413748	-	asmbl_23693	none	blat.proc3825148.chain_2560	1	STRG.2587.1,STRG.2587.2,blat.proc3825148.chain_2556,blat.proc3825148.chain_2557,blat.proc3825148.chain_2558,blat.proc3825148.chain_2559	6
scaffold_1	skipped_exon	10414454	10415687	-	asmbl_585	none	STRG.678.2,blat.proc3825148.chain_718	2	STRG.678.1,blat.proc3825148.chain_716	2
scaffold_11	ends_in_intron	3518042	3518042	+	asmbl_5443,asmbl_5447	none	blat.proc3825170.chain_1977,blat.proc3825170.chain_1978	2	STRG.13485.3	1
scaffold_23	alternate_exon	7406584	7410499	+	asmbl_31693	none	STRG.26061.3,Trinity_GG_31707_c0_g1_i1	2	STRG.26061.2	1
scaffold_26	alt_donor	6018172	6018173	+	asmbl_35069,asmbl_35070	none	STRG.28321.2,blat.proc3825178.chain_1376	2	STRG.28321.1,blat.proc3825178.chain_1377	2
scaffold_18	retained_intron	6005536	6006129	+	asmbl_20656	none	blat.proc3825174.chain_2355,blat.proc3825174.chain_2358	2	STRG.21369.1,blat.proc3825174.chain_2357,blat.proc3825174.chain_2359	3
scaffold_25	retained_intron	4539033	4539139	+	asmbl_33510	none	Trinity_GG_32413_c0_g1_i4,blat.proc3825178.chain_491	2	blat.proc3825178.chain_493	1
scaffold_14	spliced_intron	7444437	7444909	-	asmbl_13200	none	STRG.17184.1,Trinity_GG_9625_c0_g1_i3,blat.proc3825156.chain_1979	3	STRG.17184.2,Trinity_GG_9625_c0_g1_i2,blat.proc3825156.chain_1980	3
scaffold_2	retained_exon	7781545	7781620	+	asmbl_24575	none	STRG.2075.5	1	STRG.2075.1,STRG.2075.2,STRG.2075.3,STRG.2075.4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2228,blat.proc3825164.chain_2229,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	9
scaffold_5	skipped_exon	4688617	4690762	-	asmbl_43983,asmbl_43985,asmbl_43989,asmbl_43991,asmbl_43993	none	STRG.5929.1,STRG.5929.4,blat.proc3825150.chain_2078,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2082,blat.proc3825150.chain_2085	7	blat.proc3825150.chain_2075,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084	3
scaffold_2	alternate_exon	6507524	6510600	-	asmbl_23206	none	STRG.2013.1,blat.proc3825148.chain_2016	2	STRG.2013.4,Trinity_GG_1121_c0_g1_i2,blat.proc3825148.chain_2018	3
scaffold_24	alt_acceptor	9119235	9119236	+	asmbl_32507,asmbl_32508	none	Trinity_GG_32221_c0_g1_i2,Trinity_GG_32221_c0_g1_i9,blat.proc3825178.chain_171,blat.proc3825178.chain_172,blat.proc3825178.chain_174	5	STRG.26942.1,blat.proc3825178.chain_173,blat.proc3825178.chain_175,blat.proc3825178.chain_176,blat.proc3825178.chain_177,blat.proc3825178.chain_178,blat.proc3825178.chain_179,blat.proc3825178.chain_180	8
scaffold_17	retained_intron	13048788	13049071	+	asmbl_19307	none	Trinity_GG_28702_c0_g2_i1,blat.proc3825174.chain_1647	2	STRG.20798.1,blat.proc3825174.chain_1646	2
scaffold_2	alt_donor	796784	796785	+	asmbl_24106	none	STRG.1558.2	1	STRG.1558.1,Trinity_GG_18207_c0_g1_i2	2
scaffold_2	alt_donor	1334729	1334730	+	asmbl_24190	none	STRG.1604.3	1	STRG.1604.4,blat.proc3825164.chain_1784,blat.proc3825164.chain_1785	3
scaffold_8	alt_donor	12719843	12719844	-	asmbl_52221	none	STRG.10449.1	1	STRG.10449.2,blat.proc3825152.chain_2668	2
scaffold_5	alternate_exon	10306383	10307764	+	asmbl_45670	none	STRG.6330.1,blat.proc3825166.chain_2544	2	blat.proc3825166.chain_2543	1
scaffold_1097	spliced_intron	2773	2913	+	asmbl_5247	none	STRG.30536.1	1	STRG.30536.3	1
scaffold_16	alt_donor	744655	744656	-	asmbl_16902	none	blat.proc3825158.chain_189	1	blat.proc3825158.chain_187,blat.proc3825158.chain_188	2
scaffold_14	spliced_intron	6596360	6596436	+	asmbl_12091	none	Trinity_GG_26716_c0_g1_i1,blat.proc3825172.chain_1859	2	Trinity_GG_26716_c0_g1_i2,blat.proc3825172.chain_1860	2
scaffold_8	spliced_intron	6018616	6018729	-	asmbl_51856	none	STRG.10012.1,Trinity_GG_5580_c0_g1_i2,blat.proc3825152.chain_2269	3	Trinity_GG_5580_c0_g1_i3,blat.proc3825152.chain_2267	2
scaffold_3	alt_donor	14189175	14189176	-	asmbl_39332	none	STRG.3761.4	1	STRG.3761.2,blat.proc3825148.chain_3664,blat.proc3825148.chain_3666,blat.proc3825148.chain_3668	4
scaffold_24	retained_intron	6225905	6226490	-	asmbl_32939,asmbl_32942,asmbl_32944,asmbl_32947,asmbl_32950	none	STRG.26685.3,STRG.26685.6,STRG.26685.7,Trinity_GG_14882_c0_g1_i10,blat.proc3825160.chain_3732,blat.proc3825160.chain_3733,blat.proc3825160.chain_3736	7	STRG.26685.1,STRG.26685.2,STRG.26685.4,STRG.26685.5,STRG.26685.8,Trinity_GG_14882_c0_g1_i8,blat.proc3825160.chain_3734,blat.proc3825160.chain_3735,blat.proc3825160.chain_3737	9
scaffold_1	spliced_intron	17725702	17726002	+	asmbl_2528,asmbl_2529,asmbl_2530	none	STRG.1244.1,Trinity_GG_18025_c0_g1_i1,Trinity_GG_18025_c0_g1_i2,Trinity_GG_18025_c0_g1_i3,blat.proc3825164.chain_1364,blat.proc3825164.chain_1365,blat.proc3825164.chain_1366	7	STRG.1244.2	1
scaffold_5	retained_intron	10251374	10251506	-	asmbl_44332,asmbl_44333	none	STRG.6327.2,blat.proc3825150.chain_2457,blat.proc3825150.chain_2459	3	STRG.6327.1,blat.proc3825150.chain_2456,blat.proc3825150.chain_2458	3
scaffold_11	alternate_exon	190514	194414	+	asmbl_5275	none	STRG.13252.1,blat.proc3825170.chain_1804	2	STRG.13252.2,Trinity_GG_24600_c0_g1_i2,blat.proc3825170.chain_1806	3
scaffold_17	alt_donor	3233713	3233714	-	asmbl_17808	none	STRG.20107.1,blat.proc3825158.chain_1150	2	STRG.20107.2,blat.proc3825158.chain_1151	2
scaffold_25	retained_intron	5828532	5828681	-	asmbl_34297	none	blat.proc3825162.chain_881	1	STRG.27479.1,STRG.27479.4,Trinity_GG_15422_c0_g1_i7,blat.proc3825162.chain_875,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_879,blat.proc3825162.chain_880	8
scaffold_4	skipped_exon	5738957	5739769	-	asmbl_42635	none	STRG.4470.1,blat.proc3825150.chain_713	2	STRG.4470.2	1
scaffold_19	starts_in_intron	10066451	10066451	+	asmbl_21613,asmbl_21616	none	STRG.22393.3,blat.proc3825174.chain_3292	2	STRG.22393.1,STRG.22393.2,blat.proc3825174.chain_3294,blat.proc3825174.chain_3296	4
scaffold_26	ends_in_intron	6704737	6704737	-	asmbl_35702	none	blat.proc3825162.chain_1603	1	STRG.28371.1,STRG.28371.2,STRG.28371.3,blat.proc3825162.chain_1602,blat.proc3825162.chain_1604	5
scaffold_14	retained_intron	11764873	11765001	-	asmbl_13532	none	blat.proc3825156.chain_2323	1	STRG.17521.1,blat.proc3825156.chain_2324	2
scaffold_10	spliced_intron	9060945	9061043	-	asmbl_4668	none	STRG.12655.3,blat.proc3825154.chain_1203	2	blat.proc3825154.chain_1204	1
scaffold_17	ends_in_intron	8159803	8159803	+	asmbl_18936	none	Trinity_GG_28494_c1_g1_i1	1	STRG.20433.1,STRG.20433.2,blat.proc3825174.chain_1263,blat.proc3825174.chain_1264,blat.proc3825174.chain_1265	5
scaffold_7	spliced_intron	12279110	12279796	+	asmbl_50238,asmbl_50241	none	STRG.9323.1,blat.proc3825168.chain_1766,blat.proc3825168.chain_1767	3	Trinity_GG_22453_c0_g1_i2,blat.proc3825168.chain_1765	2
scaffold_28	alt_donor	2317742	2317743	+	asmbl_37361,asmbl_37362	none	STRG.29407.2,blat.proc3825178.chain_2596	2	STRG.29407.1,blat.proc3825178.chain_2597	2
scaffold_2	retained_intron	14193588	14193682	-	asmbl_23566	none	STRG.2416.1	1	STRG.2416.2,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	4
scaffold_15	retained_exon	3918068	3918098	+	asmbl_15114	none	STRG.18146.1,Trinity_GG_27267_c1_g1_i1	2	STRG.18146.2	1
scaffold_5	skipped_exon	13660264	13661299	-	asmbl_44545	none	STRG.6585.2,blat.proc3825150.chain_2670	2	STRG.6585.1,blat.proc3825150.chain_2672,blat.proc3825150.chain_2674	3
scaffold_19	alt_acceptor	13143402	13143403	+	asmbl_21856	none	STRG.22635.1,blat.proc3825174.chain_3608	2	STRG.22635.2,Trinity_GG_29799_c0_g1_i1,blat.proc3825174.chain_3607	3
scaffold_4	alt_acceptor	13416717	13416718	+	asmbl_41790	none	STRG.4977.2	1	STRG.4977.1,STRG.4977.3,blat.proc3825166.chain_1334,blat.proc3825166.chain_1335,blat.proc3825166.chain_1336,blat.proc3825166.chain_1337	6
scaffold_17	ends_in_intron	2358631	2358631	+	asmbl_18645	none	blat.proc3825174.chain_910	1	STRG.20030.1,STRG.20030.2,STRG.20030.4,STRG.20030.5,STRG.20030.6,STRG.20030.7,blat.proc3825174.chain_907,blat.proc3825174.chain_909	8
scaffold_8	alt_donor	11270675	11270676	-	asmbl_52142	none	STRG.10337.3	1	STRG.10337.2,blat.proc3825152.chain_2579	2
scaffold_22	starts_in_intron	4364297	4364297	+	asmbl_29992	none	Trinity_GG_31043_c1_g1_i1,blat.proc3825176.chain_1944	2	STRG.24855.2,Trinity_GG_31043_c1_g1_i2,blat.proc3825176.chain_1943	3
scaffold_4	starts_in_intron	3297452	3297452	+	asmbl_41173	none	blat.proc3825166.chain_686	1	STRG.4259.1,blat.proc3825166.chain_687	2
scaffold_3	ends_in_intron	4282203	4282203	+	asmbl_39995	none	blat.proc3825164.chain_3366	1	STRG.3123.1,STRG.3123.2	2
scaffold_6	retained_intron	11114758	11114940	-	asmbl_48739	none	STRG.7925.3,Trinity_GG_4505_c0_g1_i1,blat.proc3825152.chain_327	3	STRG.7925.1,STRG.7925.2,Trinity_GG_4505_c0_g1_i4,blat.proc3825152.chain_328	4
scaffold_20	alternate_exon	8256395	8256448	+	asmbl_26753	none	STRG.23369.2	1	STRG.23369.1,Trinity_GG_30198_c0_g1_i1,blat.proc3825176.chain_515	3
scaffold_1	spliced_intron	20506233	20506257	-	asmbl_1186	none	STRG.1406.2	1	STRG.1406.1	1
scaffold_23	retained_intron	10230166	10230202	+	asmbl_31843	none	STRG.26230.2	1	STRG.26230.1	1
scaffold_13	retained_intron	11581870	11581964	+	asmbl_11281	none	blat.proc3825172.chain_1011	1	STRG.16314.1,blat.proc3825172.chain_1012,blat.proc3825172.chain_1013,blat.proc3825172.chain_1014	4
scaffold_20	alt_donor	11695429	11695430	-	asmbl_26187	none	STRG.23682.1,blat.proc3825160.chain_772	2	blat.proc3825160.chain_771	1
scaffold_23	retained_intron	4449320	4449423	-	asmbl_30865,asmbl_30867,asmbl_30870	none	STRG.25862.3,STRG.25862.4,STRG.25862.5,Trinity_GG_14447_c0_g1_i1,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3002,blat.proc3825160.chain_3004	7	STRG.25862.1,STRG.25862.2,Trinity_GG_14447_c0_g1_i2,blat.proc3825160.chain_3005	4
scaffold_3	spliced_intron	13899490	13899649	+	asmbl_40467,asmbl_40468	none	STRG.3736.1,blat.proc3825166.chain_230,blat.proc3825166.chain_231	3	blat.proc3825166.chain_232	1
scaffold_13	alt_acceptor	518486	518487	+	asmbl_10486,asmbl_10488,asmbl_10489,asmbl_10490	none	STRG.15449.2,STRG.15449.4,blat.proc3825172.chain_179,blat.proc3825172.chain_182,blat.proc3825172.chain_183	5	STRG.15449.3,STRG.15449.5,Trinity_GG_25810_c0_g1_i15,Trinity_GG_25810_c0_g1_i5,Trinity_GG_25810_c0_g1_i9,blat.proc3825172.chain_180,blat.proc3825172.chain_184,blat.proc3825172.chain_185	8
scaffold_14	alt_acceptor	3226991	3226992	+	asmbl_11925	none	STRG.16910.2	1	STRG.16910.1,STRG.16910.3	2
scaffold_20	starts_in_intron	10519625	10519625	-	asmbl_26109	none	Trinity_GG_13142_c0_g1_i4,blat.proc3825160.chain_650	2	STRG.23593.1,STRG.23593.2,blat.proc3825160.chain_651,blat.proc3825160.chain_652	4
scaffold_22	spliced_intron	4220495	4220866	-	asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29222,asmbl_29227	none	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2079	7	blat.proc3825160.chain_2069,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078	3
scaffold_1	retained_intron	1420788	1420966	-	asmbl_67	none	Trinity_GG_5_c0_g1_i3,blat.proc3825148.chain_10	2	STRG.85.1,Trinity_GG_5_c0_g1_i2,blat.proc3825148.chain_9	3
scaffold_13	starts_in_intron	8942776	8942776	-	asmbl_10001	none	blat.proc3825156.chain_1047	1	STRG.16164.1,blat.proc3825156.chain_1046	2
scaffold_6	skipped_exon	14899596	14900520	+	asmbl_47646	none	STRG.8266.2,Trinity_GG_21865_c0_g1_i1,blat.proc3825168.chain_752	3	STRG.8266.3,blat.proc3825168.chain_753	2
scaffold_20	alternate_exon	11479122	11479192	+	asmbl_27051,asmbl_27052,asmbl_27057,asmbl_27058,asmbl_27059	none	STRG.23653.1,STRG.23653.2,STRG.23653.3,STRG.23653.4,Trinity_GG_30405_c0_g1_i1,Trinity_GG_30405_c0_g1_i2,blat.proc3825176.chain_845,blat.proc3825176.chain_846	8	Trinity_GG_30405_c0_g1_i4,blat.proc3825176.chain_847	2
scaffold_4	retained_intron	158350	158690	+	asmbl_41087	none	Trinity_GG_19603_c0_g1_i2,Trinity_GG_19603_c1_g1_i1,blat.proc3825166.chain_576,blat.proc3825166.chain_578	4	STRG.4113.1,blat.proc3825166.chain_577	2
scaffold_1	retained_exon	14965422	14965493	+	asmbl_2416	none	STRG.1073.1,blat.proc3825164.chain_1156	2	STRG.1073.2	1
scaffold_340	alt_acceptor	1023	1024	+	asmbl_41014	none	STRG.30295.1	1	STRG.30295.3,STRG.30295.4,STRG.30295.5	3
scaffold_8	retained_exon	17974550	17974661	-	asmbl_52497	none	STRG.10702.1,Trinity_GG_5951_c0_g1_i1,blat.proc3825152.chain_2975	3	STRG.10702.2	1
scaffold_1	spliced_intron	14349751	14349879	-	asmbl_893,asmbl_894,asmbl_896	none	STRG.1033.1,STRG.1033.2,blat.proc3825148.chain_1023,blat.proc3825148.chain_1024,blat.proc3825148.chain_1025	5	blat.proc3825148.chain_1026	1
scaffold_9	alt_acceptor	13954780	13954781	-	asmbl_55468	none	STRG.11660.1	1	blat.proc3825154.chain_145	1
scaffold_13	skipped_exon	9552494	9553613	-	asmbl_10035	none	STRG.16220.1,blat.proc3825156.chain_1112	2	STRG.16220.2	1
scaffold_13	spliced_intron	663297	663385	-	asmbl_9364,asmbl_9365,asmbl_9367,asmbl_9368	none	STRG.15453.1,STRG.15453.2,Trinity_GG_8668_c0_g1_i2,Trinity_GG_8668_c0_g1_i3,Trinity_GG_8668_c0_g1_i4,Trinity_GG_8668_c0_g1_i5,blat.proc3825156.chain_312,blat.proc3825156.chain_313,blat.proc3825156.chain_315,blat.proc3825156.chain_316	10	Trinity_GG_8668_c0_g1_i6,blat.proc3825156.chain_314	2
scaffold_22	retained_intron	1013399	1013787	-	asmbl_29142	none	Trinity_GG_13836_c0_g1_i3,blat.proc3825160.chain_1947	2	STRG.24755.2,blat.proc3825160.chain_1946	2
scaffold_1	alt_donor	5207312	5207313	+	asmbl_1715	none	blat.proc3825164.chain_468	1	STRG.329.1,STRG.329.2,STRG.329.3,blat.proc3825164.chain_466,blat.proc3825164.chain_467,blat.proc3825164.chain_470,blat.proc3825164.chain_472,blat.proc3825164.chain_474,blat.proc3825164.chain_476	9
scaffold_22	spliced_intron	7891905	7892011	-	asmbl_29434	none	STRG.25146.1,blat.proc3825160.chain_2308	2	STRG.25146.2,Trinity_GG_14058_c0_g1_i1,blat.proc3825160.chain_2306,blat.proc3825160.chain_2307	4
scaffold_1	retained_intron	4226072	4226335	+	asmbl_1643	none	Trinity_GG_17494_c1_g1_i1,blat.proc3825164.chain_382	2	STRG.254.2,blat.proc3825164.chain_378,blat.proc3825164.chain_380,blat.proc3825164.chain_381	4
scaffold_2	alt_donor	9812007	9812008	-	asmbl_23392	none	STRG.2196.3	1	STRG.2196.1,STRG.2196.2,blat.proc3825148.chain_2227,blat.proc3825148.chain_2228	4
scaffold_15	retained_intron	1500945	1501282	-	asmbl_13955	none	blat.proc3825156.chain_2801	1	blat.proc3825156.chain_2803	1
scaffold_12	starts_in_intron	2921110	2921110	-	asmbl_8331	none	blat.proc3825154.chain_3049	1	STRG.14526.1,STRG.14526.3	2
scaffold_22	alt_acceptor	215204	215205	+	asmbl_29819	none	STRG.24676.3	1	STRG.24676.5	1
scaffold_12	starts_in_intron	977326	977326	-	asmbl_8282	none	STRG.14442.2,blat.proc3825154.chain_2955	2	STRG.14442.1,STRG.14442.3,STRG.14442.4,blat.proc3825154.chain_2956,blat.proc3825154.chain_2958	5
scaffold_18	starts_in_intron	600256	600256	-	asmbl_19593	none	blat.proc3825158.chain_1956	1	STRG.20998.1,STRG.20998.2,blat.proc3825158.chain_1955	3
scaffold_20	spliced_intron	8293604	8293726	+	asmbl_26759,asmbl_26762	none	STRG.23374.2,blat.proc3825176.chain_522	2	STRG.23374.1,STRG.23374.3,STRG.23374.4,Trinity_GG_30200_c1_g1_i1,blat.proc3825176.chain_521	5
scaffold_25	starts_in_intron	3092415	3092415	-	asmbl_34088	none	blat.proc3825162.chain_552	1	STRG.27251.2,STRG.27251.3,blat.proc3825162.chain_553,blat.proc3825162.chain_555	4
scaffold_14	alt_acceptor	11572188	11572189	-	asmbl_13501	none	blat.proc3825156.chain_2302	1	STRG.17499.3,Trinity_GG_9808_c0_g1_i5	2
scaffold_9	starts_in_intron	3664940	3664940	+	asmbl_53910	none	STRG.10971.4	1	STRG.10971.2,blat.proc3825168.chain_3493	2
scaffold_9	retained_exon	13607545	13607747	+	asmbl_54505	none	STRG.11647.1,blat.proc3825170.chain_456	2	STRG.11647.2,blat.proc3825170.chain_455	2
scaffold_24	retained_exon	5290242	5290375	-	asmbl_32885	none	STRG.26616.1,blat.proc3825160.chain_3750	2	STRG.26616.2	1
scaffold_13	ends_in_intron	9323411	9323411	-	asmbl_10022	none	STRG.16199.4	1	STRG.16199.1,STRG.16199.3,blat.proc3825156.chain_1012,blat.proc3825156.chain_1013	4
scaffold_19	alt_acceptor	12492120	12492121	+	asmbl_21812	none	STRG.22590.4,blat.proc3825174.chain_3625	2	STRG.22590.1,STRG.22590.3,STRG.22590.5,blat.proc3825174.chain_3624,blat.proc3825174.chain_3626	5
scaffold_24	alt_donor	7637567	7637568	-	asmbl_33044	none	STRG.26805.2	1	STRG.26805.1,blat.proc3825162.chain_169	2
scaffold_17	retained_intron	5711015	5711316	-	asmbl_17949,asmbl_17951	none	STRG.20274.2,STRG.20274.3,blat.proc3825158.chain_1288	3	STRG.20274.1,blat.proc3825158.chain_1286,blat.proc3825158.chain_1287	3
scaffold_3	spliced_intron	14317546	14317663	-	asmbl_39355,asmbl_39356,asmbl_39359	none	STRG.3772.1,STRG.3772.2,blat.proc3825148.chain_3614,blat.proc3825148.chain_3615	4	blat.proc3825148.chain_3613	1
scaffold_2	retained_exon	15686608	15686682	+	asmbl_25067,asmbl_25068	none	STRG.2522.1,STRG.2522.2,Trinity_GG_18746_c0_g1_i2,Trinity_GG_18746_c0_g1_i5,blat.proc3825164.chain_2814,blat.proc3825164.chain_2816	6	STRG.2522.3,Trinity_GG_18746_c0_g1_i4	2
scaffold_21	starts_in_intron	5453663	5453663	+	asmbl_28571	none	Trinity_GG_30672_c0_g2_i2,blat.proc3825176.chain_1318	2	STRG.24079.1,Trinity_GG_30672_c0_g2_i4,blat.proc3825176.chain_1319	3
scaffold_2	spliced_intron	5196150	5196244	-	asmbl_23142	none	STRG.1937.2,blat.proc3825148.chain_1953	2	STRG.1937.1,blat.proc3825148.chain_1952	2
scaffold_8	retained_exon	9128802	9128916	-	asmbl_52009,asmbl_52011,asmbl_52012	none	STRG.10172.2,blat.proc3825152.chain_2387,blat.proc3825152.chain_2389	3	STRG.10172.1	1
scaffold_21	retained_intron	5110609	5110692	-	asmbl_27606	none	blat.proc3825160.chain_1178	1	STRG.24048.1,blat.proc3825160.chain_1177	2
scaffold_2	retained_intron	10635940	10636060	-	asmbl_23427	none	STRG.2224.2,blat.proc3825148.chain_2261	2	STRG.2224.1,STRG.2224.3,blat.proc3825148.chain_2260,blat.proc3825148.chain_2262,blat.proc3825148.chain_2263	5
scaffold_19	skipped_exon	10204950	10206951	+	asmbl_21625	none	STRG.22401.1,blat.proc3825174.chain_3379	2	STRG.22401.2,blat.proc3825174.chain_3380	2
scaffold_10	retained_exon	3385409	3385600	+	asmbl_3037	none	STRG.12169.1,Trinity_GG_24055_c0_g1_i2,blat.proc3825170.chain_871	3	STRG.12169.2,Trinity_GG_24055_c0_g1_i1,blat.proc3825170.chain_870	3
scaffold_22	retained_intron	11402361	11402463	+	asmbl_30377,asmbl_30378	none	STRG.25474.1,Trinity_GG_31374_c2_g1_i1,blat.proc3825176.chain_2469	3	STRG.25474.2	1
scaffold_6	alt_acceptor	5196975	5196976	+	asmbl_46916,asmbl_46917	none	STRG.7496.2,Trinity_GG_21344_c0_g1_i13,blat.proc3825166.chain_3552	3	STRG.7496.1,Trinity_GG_21344_c0_g1_i16,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3554,blat.proc3825166.chain_3556	7
scaffold_19	retained_exon	3684358	3684556	+	asmbl_21333,asmbl_21337	none	STRG.22058.1,blat.proc3825174.chain_3085	2	STRG.22058.2,STRG.22058.3,STRG.22058.5	3
scaffold_22	ends_in_intron	4287584	4287584	-	asmbl_29236,asmbl_29237	none	STRG.24854.5,STRG.24854.6,Trinity_GG_13910_c2_g1_i1,blat.proc3825160.chain_2089	4	STRG.24854.1,STRG.24854.3,blat.proc3825160.chain_2083,blat.proc3825160.chain_2084,blat.proc3825160.chain_2087	5
scaffold_23	skipped_exon	10698860	10701583	+	asmbl_31869	none	STRG.26258.1	1	STRG.26258.2	1
scaffold_11	alt_acceptor	6591255	6591256	-	asmbl_6726	none	STRG.13705.2	1	STRG.13705.1,blat.proc3825154.chain_2268,blat.proc3825154.chain_2269	3
scaffold_17	spliced_intron	2535887	2536718	-	asmbl_17756,asmbl_17759,asmbl_17761,asmbl_17762	none	STRG.20049.1,STRG.20049.3,blat.proc3825158.chain_1071,blat.proc3825158.chain_1072,blat.proc3825158.chain_1076	5	STRG.20049.2,blat.proc3825158.chain_1073	2
scaffold_17	alternate_exon	13954193	13956967	-	asmbl_18389	none	STRG.20870.3	1	STRG.20870.1	1
scaffold_17	ends_in_intron	10128965	10128965	+	asmbl_19183	none	Trinity_GG_28555_c0_g1_i2,blat.proc3825174.chain_1381	2	STRG.20629.1	1
scaffold_7	starts_in_intron	17737451	17737451	+	asmbl_50495	none	blat.proc3825168.chain_2073	1	STRG.9619.1,STRG.9619.2,blat.proc3825168.chain_2072,blat.proc3825168.chain_2074	4
scaffold_6	starts_in_intron	16475006	16475006	+	asmbl_47702	none	Trinity_GG_21906_c0_g1_i1,blat.proc3825168.chain_815	2	STRG.8374.1,Trinity_GG_21906_c0_g1_i2,blat.proc3825168.chain_816	3
scaffold_22	skipped_exon	322655	323437	+	asmbl_29838,asmbl_29845	none	STRG.24686.1,blat.proc3825176.chain_1815,blat.proc3825176.chain_1819	3	STRG.24686.3,blat.proc3825176.chain_1816	2
scaffold_13	retained_intron	381874	382053	-	asmbl_9324,asmbl_9325	none	STRG.15437.2,blat.proc3825156.chain_261	2	STRG.15437.1,STRG.15437.3,blat.proc3825156.chain_263	3
scaffold_10	starts_in_intron	11603350	11603350	+	asmbl_3478	none	STRG.12815.5,Trinity_GG_24381_c0_g2_i1,blat.proc3825170.chain_1430	3	STRG.12815.1,STRG.12815.2,STRG.12815.3,STRG.12815.4,blat.proc3825170.chain_1424,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1428,blat.proc3825170.chain_1429	9
scaffold_11	alternate_exon	9185245	9186868	-	asmbl_6919	none	STRG.13963.2,Trinity_GG_7784_c0_g1_i1,blat.proc3825154.chain_2473	3	STRG.13963.1,Trinity_GG_7784_c0_g1_i2,blat.proc3825154.chain_2472	3
scaffold_4	spliced_intron	8427334	8427438	-	asmbl_42773	none	STRG.4673.2,blat.proc3825150.chain_830	2	STRG.4673.1,Trinity_GG_2573_c0_g1_i2,blat.proc3825150.chain_828,blat.proc3825150.chain_829	4
scaffold_4	spliced_intron	4103311	4103635	+	asmbl_41231,asmbl_41232	none	STRG.4316.2,blat.proc3825166.chain_696	2	STRG.4316.1,Trinity_GG_19673_c0_g1_i3,Trinity_GG_19673_c0_g1_i6,Trinity_GG_19673_c0_g1_i8,blat.proc3825166.chain_690,blat.proc3825166.chain_693,blat.proc3825166.chain_697	7
scaffold_4	starts_in_intron	14664942	14664942	-	asmbl_43071	none	blat.proc3825150.chain_1245	1	STRG.5094.1,Trinity_GG_2821_c0_g1_i2,blat.proc3825150.chain_1243,blat.proc3825150.chain_1244	4
scaffold_1	alt_acceptor	20134956	20134957	-	asmbl_1171	none	STRG.1386.2	1	STRG.1386.1,STRG.1386.5,STRG.1386.6	3
scaffold_19	ends_in_intron	2649352	2649352	+	asmbl_21265	none	blat.proc3825174.chain_2992	1	STRG.21952.1,blat.proc3825174.chain_2989,blat.proc3825174.chain_2990	3
scaffold_14	skipped_exon	15583680	15586492	+	asmbl_12629,asmbl_12633	none	STRG.17811.5,STRG.17811.6	2	STRG.17811.1,STRG.17811.3,blat.proc3825172.chain_2554,blat.proc3825172.chain_2556	4
scaffold_2	spliced_intron	6765473	6765659	+	asmbl_24490,asmbl_24491,asmbl_24494,asmbl_24495	none	STRG.2035.1,Trinity_GG_18452_c0_g1_i1,Trinity_GG_18452_c0_g1_i10,Trinity_GG_18452_c0_g1_i3,Trinity_GG_18452_c0_g1_i8,blat.proc3825164.chain_2148,blat.proc3825164.chain_2150,blat.proc3825164.chain_2151,blat.proc3825164.chain_2152	9	Trinity_GG_18452_c0_g1_i2,Trinity_GG_18452_c0_g1_i4,Trinity_GG_18452_c0_g1_i9,blat.proc3825164.chain_2146,blat.proc3825164.chain_2147,blat.proc3825164.chain_2149	6
scaffold_17	alt_acceptor	11611592	11611593	-	asmbl_18296	none	STRG.20715.1,blat.proc3825158.chain_1743	2	STRG.20715.2,blat.proc3825158.chain_1742	2
scaffold_2	ends_in_intron	7784953	7784953	+	asmbl_24570	none	Trinity_GG_18484_c0_g1_i4,blat.proc3825164.chain_2231	2	STRG.2075.1,blat.proc3825164.chain_2228,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	4
scaffold_17	retained_intron	1128141	1128599	+	asmbl_18590,asmbl_18591	none	STRG.19963.2,STRG.19963.3,Trinity_GG_28239_c0_g1_i7,blat.proc3825174.chain_837	4	STRG.19963.4,blat.proc3825174.chain_838	2
scaffold_5	alt_acceptor	7410140	7410141	-	asmbl_44174,asmbl_44175	none	STRG.6142.2,STRG.6142.3	2	STRG.6142.1	1
scaffold_14	alternate_exon	8007596	8007987	+	asmbl_12187	none	STRG.17217.3	1	STRG.17217.1,blat.proc3825172.chain_1980,blat.proc3825172.chain_1981	3
scaffold_8	skipped_exon	17651645	17653997	-	asmbl_52477	none	STRG.10684.1,blat.proc3825152.chain_2953	2	STRG.10684.2,blat.proc3825152.chain_2954	2
scaffold_7	retained_intron	13205012	13205170	+	asmbl_50315	none	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1974	2	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1972,blat.proc3825168.chain_1973,blat.proc3825168.chain_1975	5
scaffold_26	alt_acceptor	5487188	5487189	+	asmbl_34999,asmbl_35002	none	STRG.28257.1,STRG.28257.2,Trinity_GG_32935_c1_g2_i1,blat.proc3825178.chain_1369	4	STRG.28257.4,Trinity_GG_32935_c1_g2_i3,blat.proc3825178.chain_1366,blat.proc3825178.chain_1368	4
scaffold_23	alt_acceptor	317005	317006	-	asmbl_30582	none	STRG.25554.2	1	STRG.25554.1,blat.proc3825160.chain_2697	2
scaffold_13	spliced_intron	6950776	6951100	-	asmbl_9819,asmbl_9820,asmbl_9822,asmbl_9823	none	STRG.15984.2,STRG.15984.3,STRG.15984.5,STRG.15984.6	4	STRG.15984.1,Trinity_GG_8951_c0_g1_i5	2
scaffold_12	retained_intron	14908049	14908188	+	asmbl_8098	none	blat.proc3825172.chain_20	1	STRG.15276.1	1
scaffold_3	starts_in_intron	3642461	3642461	-	asmbl_38780	none	blat.proc3825148.chain_2940	1	STRG.3083.1,blat.proc3825148.chain_2939	2
scaffold_5	retained_intron	16519221	16519444	-	asmbl_44751	none	Trinity_GG_3836_c0_g2_i1,blat.proc3825150.chain_3018	2	STRG.6842.2,STRG.6842.4,blat.proc3825150.chain_3015	3
scaffold_9	alt_acceptor	5399980	5399981	+	asmbl_54037	none	STRG.11117.2,blat.proc3825168.chain_3627	2	STRG.11117.1	1
scaffold_26	retained_intron	5894602	5894720	-	asmbl_35640	none	Trinity_GG_15800_c0_g1_i8,blat.proc3825162.chain_1471	2	STRG.28301.1,STRG.28301.2,blat.proc3825162.chain_1468,blat.proc3825162.chain_1472,blat.proc3825162.chain_1473	5
scaffold_17	alternate_exon	9491166	9491564	+	asmbl_19099	none	STRG.20571.2,Trinity_GG_28580_c0_g1_i1,blat.proc3825174.chain_1433	3	STRG.20571.1,Trinity_GG_28580_c0_g1_i2,blat.proc3825174.chain_1432	3
scaffold_16	alt_acceptor	10746561	10746562	+	asmbl_16552	none	STRG.19627.1,Trinity_GG_28064_c0_g1_i2,blat.proc3825174.chain_551	3	STRG.19627.2,STRG.19627.3,Trinity_GG_28064_c0_g1_i1,blat.proc3825174.chain_552	4
scaffold_14	retained_intron	8415587	8415753	+	asmbl_12242,asmbl_12244,asmbl_12245	none	STRG.17281.2,STRG.17281.3,Trinity_GG_26820_c0_g1_i3,blat.proc3825172.chain_2050,blat.proc3825172.chain_2051	5	STRG.17281.1,blat.proc3825172.chain_2049	2
scaffold_7	retained_intron	5916677	5917155	-	asmbl_50903,asmbl_50904	none	blat.proc3825152.chain_1286,blat.proc3825152.chain_1288	2	STRG.8897.3,blat.proc3825152.chain_1285	2
scaffold_6	skipped_exon	2484045	2485297	+	asmbl_46753,asmbl_46756,asmbl_46758	none	STRG.7248.1,STRG.7248.4,blat.proc3825166.chain_3496	3	STRG.7248.5,STRG.7248.6,blat.proc3825166.chain_3499	3
scaffold_18	retained_intron	4768861	4768995	+	asmbl_20553	none	STRG.21273.1,Trinity_GG_29026_c0_g1_i1,blat.proc3825174.chain_2227	3	STRG.21273.2	1
scaffold_13	alt_donor	9536299	9536300	-	asmbl_10030,asmbl_10034	none	STRG.16216.3,STRG.16216.5,blat.proc3825156.chain_1124	3	STRG.16216.4	1
scaffold_3	retained_exon	8253586	8255632	+	asmbl_40206	none	STRG.3402.1,Trinity_GG_19231_c0_g1_i2,blat.proc3825164.chain_3649	3	STRG.3402.2	1
scaffold_17	ends_in_intron	12063159	12063159	-	asmbl_18312	none	STRG.20733.2,Trinity_GG_11640_c0_g1_i2,blat.proc3825158.chain_1719,blat.proc3825158.chain_1721	4	STRG.20733.1,Trinity_GG_11640_c0_g1_i3,blat.proc3825158.chain_1720	3
scaffold_6	starts_in_intron	4480717	4480717	-	asmbl_48320	none	blat.proc3825150.chain_3550	1	STRG.7427.1,blat.proc3825150.chain_3551	2
scaffold_8	spliced_intron	6163758	6164314	-	asmbl_51861,asmbl_51862,asmbl_51866,asmbl_51867,asmbl_51868,asmbl_51869,asmbl_51870	none	STRG.10030.1,STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	9	blat.proc3825152.chain_2270	1
scaffold_5	alternate_exon	9105759	9105949	+	asmbl_45612	none	STRG.6256.1	1	STRG.6256.2	1
scaffold_20	alt_donor	11146797	11146798	+	asmbl_27014,asmbl_27015,asmbl_27016	none	STRG.23640.2,STRG.23640.3,Trinity_GG_30351_c0_g1_i1,Trinity_GG_30351_c0_g1_i3,Trinity_GG_30351_c0_g1_i5,blat.proc3825176.chain_748,blat.proc3825176.chain_749,blat.proc3825176.chain_752	8	STRG.23640.1	1
scaffold_2	spliced_intron	4178724	4178813	+	asmbl_24342	none	STRG.1857.1,blat.proc3825164.chain_1964	2	blat.proc3825164.chain_1963	1
scaffold_5	alt_donor	2167499	2167500	-	asmbl_43874	none	STRG.5754.1,blat.proc3825150.chain_1989	2	STRG.5754.3	1
scaffold_18	spliced_intron	4848613	4848998	+	asmbl_20569	none	STRG.21278.1,Trinity_GG_28997_c0_g1_i4,blat.proc3825174.chain_2170	3	STRG.21278.2,Trinity_GG_28997_c0_g1_i1,Trinity_GG_28997_c0_g1_i2,blat.proc3825174.chain_2171,blat.proc3825174.chain_2172	5
scaffold_6	starts_in_intron	12179720	12179720	+	asmbl_47381	none	blat.proc3825168.chain_437	1	STRG.7988.1,Trinity_GG_21686_c0_g1_i2,blat.proc3825168.chain_438	3
scaffold_17	alternate_exon	8340384	8340518	+	asmbl_18984	none	STRG.20454.2	1	STRG.20454.1	1
scaffold_10	alt_donor	9555581	9555582	+	asmbl_3402,asmbl_3404	none	STRG.12711.2,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1287	3	STRG.12711.1,STRG.12711.3,Trinity_GG_24296_c0_g1_i14,blat.proc3825170.chain_1286	4
scaffold_2	starts_in_intron	4036408	4036408	+	asmbl_24334	none	Trinity_GG_18338_c0_g1_i1,blat.proc3825164.chain_1969	2	STRG.1845.1,Trinity_GG_18338_c0_g1_i2,blat.proc3825164.chain_1968	3
scaffold_13	spliced_intron	3371276	3371709	+	asmbl_10685	none	STRG.15652.1,blat.proc3825172.chain_348	2	Trinity_GG_25884_c0_g1_i2,blat.proc3825172.chain_347	2
scaffold_11	starts_in_intron	4837256	4837256	+	asmbl_5528	none	Trinity_GG_24779_c0_g1_i1,blat.proc3825170.chain_2111	2	STRG.13579.1,blat.proc3825170.chain_2112	2
scaffold_21	spliced_intron	255225	255467	-	asmbl_27282,asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27286,asmbl_27288,asmbl_27289,asmbl_27291,asmbl_27292,asmbl_27294,asmbl_27295,asmbl_27296,asmbl_27297	none	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.4,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806,blat.proc3825160.chain_807,blat.proc3825160.chain_808,blat.proc3825160.chain_809,blat.proc3825160.chain_811,blat.proc3825160.chain_812	15	blat.proc3825160.chain_805,blat.proc3825160.chain_810	2
scaffold_27	starts_in_intron	3000234	3000234	+	asmbl_36160	none	blat.proc3825178.chain_1901	1	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907,blat.proc3825178.chain_1908	9
scaffold_22	starts_in_intron	7755694	7755694	+	asmbl_30215	none	Trinity_GG_31217_c0_g1_i3,blat.proc3825176.chain_2250	2	STRG.25116.1,blat.proc3825176.chain_2248	2
scaffold_5	spliced_intron	10852168	10852260	+	asmbl_45699,asmbl_45702	none	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2525	3	blat.proc3825166.chain_2522	1
scaffold_8	starts_in_intron	4668390	4668390	-	asmbl_51787	none	STRG.9928.1,blat.proc3825152.chain_2178	2	blat.proc3825152.chain_2179	1
scaffold_5	alternate_exon	2235044	2235386	-	asmbl_43878	none	STRG.5760.1	1	blat.proc3825150.chain_1995	1
scaffold_8	alternate_exon	14406348	14411940	-	asmbl_52311	none	STRG.10529.1,blat.proc3825152.chain_2648	2	blat.proc3825152.chain_2649	1
scaffold_6	spliced_intron	12992093	12992335	-	asmbl_48857,asmbl_48859	none	STRG.8068.3,STRG.8068.4,blat.proc3825152.chain_489	3	STRG.8068.2,blat.proc3825152.chain_495	2
scaffold_11	alt_acceptor	6396023	6396024	-	asmbl_6707,asmbl_6708	none	STRG.13697.1,STRG.13697.2,Trinity_GG_7653_c0_g1_i2,Trinity_GG_7653_c0_g1_i3,blat.proc3825154.chain_2241,blat.proc3825154.chain_2242	6	STRG.13697.3,STRG.13697.4	2
scaffold_4	starts_in_intron	1970862	1970862	+	asmbl_41149	none	blat.proc3825166.chain_619	1	STRG.4211.1,STRG.4211.2,Trinity_GG_19631_c0_g1_i1,Trinity_GG_19631_c0_g1_i3,blat.proc3825166.chain_620,blat.proc3825166.chain_621	6
scaffold_11	retained_intron	9829435	9829603	+	asmbl_5906,asmbl_5907	none	STRG.14008.1,STRG.14008.3,Trinity_GG_25038_c0_g1_i4,Trinity_GG_25038_c0_g1_i6,blat.proc3825170.chain_2560,blat.proc3825170.chain_2561	6	STRG.14008.4,blat.proc3825170.chain_2565	2
scaffold_4	spliced_intron	3383632	3383773	+	asmbl_41188,asmbl_41189,asmbl_41192	none	STRG.4276.1,STRG.4276.2,blat.proc3825166.chain_746,blat.proc3825166.chain_748,blat.proc3825166.chain_749	5	STRG.4276.3,blat.proc3825166.chain_745	2
scaffold_3	starts_in_intron	17455909	17455909	+	asmbl_40679,asmbl_40682,asmbl_40684	none	STRG.3978.2,STRG.3978.3,STRG.3978.4	3	STRG.3978.1	1
scaffold_24	ends_in_intron	3766386	3766386	-	asmbl_32852	none	blat.proc3825160.chain_3682	1	STRG.26560.1,blat.proc3825160.chain_3683	2
scaffold_7	ends_in_intron	1447349	1447349	-	asmbl_50736	none	STRG.8648.2	1	STRG.8648.1,Trinity_GG_4938_c0_g1_i2,blat.proc3825152.chain_1132	3
scaffold_11	alt_donor	6590721	6590722	-	asmbl_6725,asmbl_6726	none	STRG.13705.2,blat.proc3825154.chain_2269	2	STRG.13705.1,blat.proc3825154.chain_2268	2
scaffold_6	starts_in_intron	7306624	7306624	+	asmbl_47069	none	Trinity_GG_21488_c0_g1_i1,blat.proc3825168.chain_63	2	STRG.7639.1,blat.proc3825168.chain_62	2
scaffold_13	alternate_exon	7014565	7014695	-	asmbl_9835	none	STRG.15991.1,blat.proc3825156.chain_794	2	blat.proc3825156.chain_793	1
scaffold_21	alt_donor	1300298	1300299	-	asmbl_27405,asmbl_27406,asmbl_27407,asmbl_27408	none	STRG.23810.1,STRG.23810.4,Trinity_GG_13281_c0_g1_i1,Trinity_GG_13281_c0_g1_i2,blat.proc3825160.chain_949,blat.proc3825160.chain_950	6	STRG.23810.3,STRG.23810.5,Trinity_GG_13281_c0_g1_i3,blat.proc3825160.chain_951	4
scaffold_9	retained_intron	6240560	6240600	-	asmbl_55047	none	Trinity_GG_6156_c0_g1_i2,blat.proc3825152.chain_3336	2	STRG.11163.1,blat.proc3825152.chain_3337	2
scaffold_1	spliced_intron	3680316	3680406	+	asmbl_1627	none	blat.proc3825164.chain_366,blat.proc3825164.chain_368	2	STRG.242.1,blat.proc3825164.chain_370,blat.proc3825164.chain_372	3
scaffold_22	spliced_intron	1013479	1013787	-	asmbl_29140	none	STRG.24755.1,blat.proc3825160.chain_1945	2	Trinity_GG_13836_c0_g1_i3,blat.proc3825160.chain_1947	2
scaffold_5	alt_acceptor	13227872	13227873	+	asmbl_45860	none	STRG.6563.1	1	STRG.6563.2,blat.proc3825166.chain_2738	2
scaffold_18	retained_intron	8726003	8726179	+	asmbl_20858,asmbl_20861	none	STRG.21537.2,blat.proc3825174.chain_2615,blat.proc3825174.chain_2617	3	STRG.21537.3,blat.proc3825174.chain_2618,blat.proc3825174.chain_2620	3
scaffold_12	alt_donor	7271999	7272000	+	asmbl_7735	none	STRG.14800.1,blat.proc3825170.chain_3340	2	STRG.14800.2,blat.proc3825170.chain_3339	2
scaffold_4	retained_intron	3383632	3383773	+	asmbl_41193,asmbl_41194	none	STRG.4276.3,blat.proc3825166.chain_745	2	STRG.4276.1,STRG.4276.2,blat.proc3825166.chain_746,blat.proc3825166.chain_748,blat.proc3825166.chain_749	5
scaffold_5	retained_intron	11993128	11993287	-	asmbl_44435	none	blat.proc3825150.chain_2615	1	STRG.6453.2,STRG.6453.4,STRG.6453.5,STRG.6453.8,STRG.6453.9,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	7
scaffold_7	alternate_exon	17610793	17613091	+	asmbl_50487	none	STRG.9612.2	1	Trinity_GG_22616_c0_g1_i2	1
scaffold_22	alt_acceptor	4578373	4578374	+	asmbl_30023,asmbl_30030,asmbl_30031	none	STRG.24887.1,STRG.24887.2,blat.proc3825176.chain_2003,blat.proc3825176.chain_2004	4	STRG.24887.3,blat.proc3825176.chain_2005	2
scaffold_20	alternate_exon	10695177	10695256	+	asmbl_26987	none	STRG.23601.1	1	STRG.23601.2,STRG.23601.3,blat.proc3825176.chain_791,blat.proc3825176.chain_792	4
scaffold_18	alt_acceptor	13662446	13662447	+	asmbl_21034	none	STRG.21806.1,blat.proc3825174.chain_2827	2	STRG.21806.2	1
scaffold_18	retained_intron	7868121	7868317	+	asmbl_20798	none	STRG.21488.4,Trinity_GG_29146_c0_g1_i11,blat.proc3825174.chain_2453,blat.proc3825174.chain_2454	4	STRG.21488.1,STRG.21488.2,STRG.21488.3,STRG.21488.5,STRG.21488.6,STRG.21488.7,Trinity_GG_29146_c0_g1_i16,blat.proc3825174.chain_2451,blat.proc3825174.chain_2452,blat.proc3825174.chain_2456,blat.proc3825174.chain_2459,blat.proc3825174.chain_2460	12
scaffold_25	spliced_intron	4810874	4810995	+	asmbl_33530,asmbl_33531,asmbl_33534	none	STRG.27415.1,STRG.27415.2,Trinity_GG_32429_c0_g1_i2,Trinity_GG_32429_c0_g1_i5,blat.proc3825178.chain_523,blat.proc3825178.chain_526,blat.proc3825178.chain_527	7	Trinity_GG_32429_c0_g1_i1,Trinity_GG_32429_c0_g1_i4,blat.proc3825178.chain_524,blat.proc3825178.chain_525	4
scaffold_1545	skipped_exon	357	1828	-	asmbl_15971	none	STRG.30622.2	1	STRG.30622.1	1
scaffold_25	retained_intron	4871626	4872194	-	asmbl_34231	none	STRG.27422.2,blat.proc3825162.chain_777	2	STRG.27422.1,Trinity_GG_15377_c0_g1_i2,blat.proc3825162.chain_778	3
scaffold_20	alt_acceptor	5544121	5544122	+	asmbl_26625	none	STRG.23181.2	1	STRG.23181.1	1
scaffold_1	starts_in_intron	4387144	4387144	-	asmbl_187	none	Trinity_GG_92_c0_g1_i4,blat.proc3825148.chain_146	2	STRG.269.1,STRG.269.2,blat.proc3825148.chain_147	3
scaffold_22	retained_intron	7884588	7884719	-	asmbl_29429	none	blat.proc3825160.chain_2295,blat.proc3825160.chain_2298	2	STRG.25144.1,blat.proc3825160.chain_2297	2
scaffold_2	alt_acceptor	19773023	19773024	+	asmbl_25288	none	STRG.2827.2	1	STRG.2827.1,blat.proc3825164.chain_3072,blat.proc3825164.chain_3073,blat.proc3825164.chain_3074	4
scaffold_22	retained_exon	10238117	10238146	-	asmbl_29586	none	STRG.25369.1,blat.proc3825160.chain_2495	2	STRG.25369.2,STRG.25369.3,blat.proc3825160.chain_2496	3
scaffold_10	alt_acceptor	9375887	9375888	+	asmbl_3374	none	blat.proc3825170.chain_1253	1	STRG.12676.1,blat.proc3825170.chain_1254,blat.proc3825170.chain_1255	3
scaffold_5	alt_donor	5754426	5754427	+	asmbl_45370	none	STRG.5996.2,blat.proc3825166.chain_2158	2	STRG.5996.3,STRG.5996.4	2
scaffold_17	skipped_exon	791549	793111	+	asmbl_18575	none	blat.proc3825174.chain_823	1	STRG.19934.1,STRG.19934.2	2
scaffold_5	retained_exon	5608356	5608889	+	asmbl_45352	none	STRG.5985.2	1	STRG.5985.1,blat.proc3825166.chain_2203	2
scaffold_26	retained_intron	5874800	5875093	-	asmbl_35633	none	STRG.28291.1,Trinity_GG_15831_c1_g1_i1,blat.proc3825162.chain_1537	3	STRG.28291.2,Trinity_GG_15831_c0_g1_i1,blat.proc3825162.chain_1536	3
scaffold_7	alt_acceptor	18350736	18350737	-	asmbl_51458	none	STRG.9663.1	1	STRG.9663.2,STRG.9663.3	2
scaffold_25	retained_intron	5157955	5158103	-	asmbl_34247	none	blat.proc3825162.chain_805	1	STRG.27443.1,STRG.27443.2,STRG.27443.3,blat.proc3825162.chain_807,blat.proc3825162.chain_808,blat.proc3825162.chain_809	6
scaffold_28	alternate_exon	9268632	9269134	+	asmbl_37779	none	STRG.29970.3,Trinity_GG_33883_c0_g1_i1,blat.proc3825178.chain_3087	3	STRG.29970.1,Trinity_GG_33883_c0_g1_i2,blat.proc3825178.chain_3088	3
scaffold_18	spliced_intron	5606473	5606848	+	asmbl_20594	none	STRG.21316.1,blat.proc3825174.chain_2263	2	Trinity_GG_29049_c0_g1_i2,blat.proc3825174.chain_2264	2
scaffold_3	alt_donor	11978458	11978459	+	asmbl_40383	none	STRG.3620.2,Trinity_GG_19308_c0_g1_i1,blat.proc3825166.chain_50	3	STRG.3620.1,Trinity_GG_19308_c0_g1_i2,blat.proc3825166.chain_49	3
scaffold_8	retained_intron	15733421	15733539	+	asmbl_53416	none	Trinity_GG_23193_c0_g1_i2,blat.proc3825168.chain_3119	2	STRG.10577.1,blat.proc3825168.chain_3118,blat.proc3825168.chain_3120	3
scaffold_3	retained_intron	11270000	11270142	+	asmbl_40336	none	Trinity_GG_19325_c0_g1_i1,blat.proc3825166.chain_77	2	STRG.3552.1,Trinity_GG_19325_c0_g1_i2,blat.proc3825166.chain_76	3
scaffold_11	alt_acceptor	5104247	5104248	+	asmbl_5540	none	STRG.13598.2,blat.proc3825170.chain_2125	2	STRG.13598.1,blat.proc3825170.chain_2126	2
scaffold_7	alt_acceptor	13213512	13213513	+	asmbl_50320	none	STRG.9429.4	1	STRG.9429.3,blat.proc3825168.chain_1942	2
scaffold_6	retained_intron	12653940	12654089	+	asmbl_47430,asmbl_47431	none	STRG.8027.2,Trinity_GG_21691_c1_g1_i4,blat.proc3825168.chain_447	3	STRG.8027.1,blat.proc3825168.chain_449	2
scaffold_4	alt_donor	6286677	6286678	-	asmbl_42666,asmbl_42669,asmbl_42673	none	STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i7,blat.proc3825150.chain_774,blat.proc3825150.chain_780	6	STRG.4498.1,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778	7
scaffold_27	alternate_exon	8935439	8935525	-	asmbl_37122	none	STRG.29138.2	1	STRG.29138.1	1
scaffold_5	retained_intron	5622048	5622220	-	asmbl_44048	none	Trinity_GG_3374_c0_g1_i4,blat.proc3825150.chain_2203	2	STRG.5989.1,STRG.5989.2,blat.proc3825150.chain_2200	3
scaffold_1	retained_intron	6323837	6323948	+	asmbl_1829	none	blat.proc3825164.chain_578	1	STRG.430.1,blat.proc3825164.chain_576,blat.proc3825164.chain_577	3
scaffold_9	retained_exon	9656293	9656349	+	asmbl_54218,asmbl_54220	none	STRG.11344.1,blat.proc3825170.chain_155,blat.proc3825170.chain_158	3	STRG.11344.2,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_157	4
scaffold_24	ends_in_intron	6725096	6725096	-	asmbl_32970	none	blat.proc3825162.chain_95	1	STRG.26723.1,STRG.26723.2,blat.proc3825162.chain_100,blat.proc3825162.chain_98,blat.proc3825162.chain_99	5
scaffold_1	skipped_exon	18086651	18087485	-	asmbl_1088	none	STRG.1272.2	1	STRG.1272.1,blat.proc3825148.chain_1269,blat.proc3825148.chain_1270	3
scaffold_22	alternate_exon	6156680	6156731	-	asmbl_29313,asmbl_29314	none	blat.proc3825160.chain_2105,blat.proc3825160.chain_2107	2	STRG.24977.3	1
scaffold_21	ends_in_intron	6588957	6588957	+	asmbl_28669	none	blat.proc3825176.chain_1401	1	STRG.24182.1,Trinity_GG_30715_c0_g1_i2,blat.proc3825176.chain_1402,blat.proc3825176.chain_1403	4
scaffold_5	starts_in_intron	13660580	13660580	-	asmbl_44547	none	blat.proc3825150.chain_2671	1	STRG.6585.1,STRG.6585.2,blat.proc3825150.chain_2670,blat.proc3825150.chain_2672,blat.proc3825150.chain_2674	5
scaffold_17	alternate_exon	7622708	7622876	+	asmbl_18912	none	STRG.20398.1	1	STRG.20398.2	1
scaffold_23	spliced_intron	1741287	1741399	+	asmbl_31353,asmbl_31354,asmbl_31355	none	blat.proc3825176.chain_2571,blat.proc3825176.chain_2572,blat.proc3825176.chain_2573	3	blat.proc3825176.chain_2570	1
scaffold_12	alt_acceptor	16247327	16247328	+	asmbl_8154	none	STRG.15380.2,Trinity_GG_25754_c0_g1_i3,blat.proc3825172.chain_83	3	STRG.15380.1,Trinity_GG_25754_c0_g1_i2,blat.proc3825172.chain_85	3
scaffold_8	spliced_intron	18108298	18108429	+	asmbl_53533	none	STRG.10716.3	1	STRG.10716.2,Trinity_GG_23260_c0_g1_i3,blat.proc3825168.chain_3249	3
scaffold_4	retained_intron	19274897	19275126	-	asmbl_43417,asmbl_43418	none	Trinity_GG_3099_c0_g1_i2,Trinity_GG_3099_c0_g1_i3,blat.proc3825150.chain_1704,blat.proc3825150.chain_1706	4	STRG.5511.1,blat.proc3825150.chain_1705,blat.proc3825150.chain_1707	3
scaffold_11	retained_intron	1286686	1286928	-	asmbl_6421	none	blat.proc3825154.chain_1868	1	STRG.13318.1,blat.proc3825154.chain_1869,blat.proc3825154.chain_1870	3
scaffold_15	alternate_exon	4133364	4133547	-	asmbl_14129	none	Trinity_GG_10195_c0_g1_i3,blat.proc3825156.chain_2966	2	STRG.18161.2	1
scaffold_3	alt_donor	7711275	7711276	-	asmbl_38978,asmbl_38981	none	blat.proc3825148.chain_3198,blat.proc3825148.chain_3201	2	STRG.3368.1,blat.proc3825148.chain_3197,blat.proc3825148.chain_3199,blat.proc3825148.chain_3200,blat.proc3825148.chain_3202,blat.proc3825148.chain_3203,blat.proc3825148.chain_3204	7
scaffold_9	alt_donor	2823440	2823441	+	asmbl_53871	none	STRG.10917.2	1	STRG.10917.1,Trinity_GG_23379_c0_g1_i1,blat.proc3825168.chain_3444	3
scaffold_28	spliced_intron	2651234	2651332	+	asmbl_37394	none	STRG.29457.2,blat.proc3825178.chain_2671	2	STRG.29457.1	1
scaffold_4	retained_intron	4414847	4415344	+	asmbl_41256,asmbl_41257,asmbl_41261	none	blat.proc3825166.chain_847,blat.proc3825166.chain_854,blat.proc3825166.chain_855	3	Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_845	2
scaffold_11	starts_in_intron	8928079	8928079	-	asmbl_6894	none	Trinity_GG_7773_c0_g1_i1,blat.proc3825154.chain_2451	2	STRG.13916.1,Trinity_GG_7773_c0_g1_i2,blat.proc3825154.chain_2452	3
scaffold_10	alt_acceptor	3774874	3774875	-	asmbl_4228	none	STRG.12210.2	1	STRG.12210.1,blat.proc3825154.chain_775	2
scaffold_11	spliced_intron	11641641	11641750	+	asmbl_5980,asmbl_5982,asmbl_5983,asmbl_5984,asmbl_5987,asmbl_5988,asmbl_5989	none	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2633,blat.proc3825170.chain_2634,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2639,blat.proc3825170.chain_2640	8	blat.proc3825170.chain_2635	1
scaffold_5	ends_in_intron	403119	403119	+	asmbl_45095	none	blat.proc3825166.chain_1891	1	STRG.5604.1	1
scaffold_15	retained_exon	3713334	3713461	-	asmbl_14116	none	STRG.18138.1,blat.proc3825156.chain_2994	2	STRG.18138.2	1
scaffold_9	spliced_intron	3413981	3414140	-	asmbl_54901,asmbl_54904	none	STRG.10955.3,blat.proc3825152.chain_3203	2	blat.proc3825152.chain_3204,blat.proc3825152.chain_3206	2
scaffold_17	alt_acceptor	11959236	11959237	-	asmbl_18306	none	STRG.20722.5	1	STRG.20722.2,STRG.20722.3,blat.proc3825158.chain_1749,blat.proc3825158.chain_1752	4
scaffold_26	retained_intron	9772322	9772904	+	asmbl_35256,asmbl_35258,asmbl_35262,asmbl_35265	none	STRG.28516.3,STRG.28516.4,STRG.28516.5,Trinity_GG_33086_c0_g1_i6,blat.proc3825178.chain_1637,blat.proc3825178.chain_1639	6	STRG.28516.2,STRG.28516.6,blat.proc3825178.chain_1638,blat.proc3825178.chain_1640	4
scaffold_22	alt_acceptor	10059286	10059287	+	asmbl_30342	none	STRG.25359.1,blat.proc3825176.chain_2372	2	STRG.25359.2	1
scaffold_5	alt_donor	12903734	12903735	+	asmbl_45833	none	STRG.6522.2	1	STRG.6522.1,blat.proc3825166.chain_2698	2
scaffold_11	alternate_exon	9699752	9707494	-	asmbl_6953	none	STRG.13992.2,Trinity_GG_7828_c1_g1_i1,blat.proc3825170.chain_2504	3	STRG.13992.5	1
scaffold_5	retained_exon	16202679	16202690	-	asmbl_44747	none	blat.proc3825150.chain_3001	1	STRG.6805.1	1
scaffold_3	starts_in_intron	18754751	18754751	+	asmbl_40746	none	STRG.4059.2	1	STRG.4059.1	1
scaffold_23	skipped_exon	9117592	9120056	-	asmbl_31093	none	blat.proc3825160.chain_3236	1	STRG.26159.1,blat.proc3825160.chain_3237	2
scaffold_22	ends_in_intron	205454	205454	+	asmbl_29817	none	Trinity_GG_30943_c0_g1_i3,blat.proc3825176.chain_1779	2	STRG.24674.1,STRG.24674.2,Trinity_GG_30943_c0_g1_i1,blat.proc3825176.chain_1780,blat.proc3825176.chain_1781	5
scaffold_20	alt_donor	9965341	9965342	-	asmbl_26066	none	Trinity_GG_13133_c0_g1_i3,blat.proc3825160.chain_628	2	STRG.23540.3,Trinity_GG_13133_c0_g1_i4,blat.proc3825160.chain_626	3
scaffold_26	starts_in_intron	4408782	4408782	-	asmbl_35551	none	blat.proc3825162.chain_1336	1	STRG.28146.1,blat.proc3825162.chain_1335,blat.proc3825162.chain_1337	3
scaffold_28	spliced_intron	9225871	9225909	-	asmbl_38498	none	Trinity_GG_16810_c0_g1_i2,blat.proc3825162.chain_3142	2	STRG.29966.1,STRG.29966.2,STRG.29966.3,Trinity_GG_16810_c0_g1_i1,blat.proc3825162.chain_3141	5
scaffold_7	alt_acceptor	13554839	13554840	-	asmbl_51312	none	blat.proc3825152.chain_1803	1	STRG.9465.1,blat.proc3825152.chain_1802,blat.proc3825152.chain_1804	3
scaffold_20	alt_donor	2364806	2364807	+	asmbl_26482	none	STRG.22969.1	1	STRG.22969.2	1
scaffold_4	alternate_exon	16661783	16661882	+	asmbl_41991	none	Trinity_GG_20222_c0_g1_i3,blat.proc3825166.chain_1601	2	STRG.5252.2,blat.proc3825166.chain_1602,blat.proc3825166.chain_1604	3
scaffold_25	spliced_intron	4289292	4289367	+	asmbl_33484	none	STRG.27359.2	1	STRG.27359.1,blat.proc3825178.chain_381	2
scaffold_28	skipped_exon	7233835	7235090	+	asmbl_37645	none	STRG.29785.3	1	STRG.29785.1,blat.proc3825178.chain_2930,blat.proc3825178.chain_2932	3
scaffold_23	spliced_intron	4311119	4313057	+	asmbl_31496,asmbl_31498,asmbl_31499,asmbl_31501	none	STRG.25852.1,Trinity_GG_31566_c0_g1_i9,blat.proc3825176.chain_2772,blat.proc3825176.chain_2777,blat.proc3825176.chain_2779	5	blat.proc3825176.chain_2776	1
scaffold_6	ends_in_intron	297882	297882	+	asmbl_46651	none	blat.proc3825166.chain_3323	1	STRG.7091.1,STRG.7091.2,STRG.7091.3,STRG.7091.4,Trinity_GG_21228_c0_g1_i1,Trinity_GG_21228_c0_g1_i2,Trinity_GG_21228_c0_g1_i3,Trinity_GG_21228_c0_g1_i4,blat.proc3825166.chain_3316,blat.proc3825166.chain_3317,blat.proc3825166.chain_3318,blat.proc3825166.chain_3319	12
scaffold_24	spliced_intron	10779344	10779463	-	asmbl_33218,asmbl_33219,asmbl_33220	none	STRG.27043.1,blat.proc3825162.chain_367,blat.proc3825162.chain_368,blat.proc3825162.chain_369	4	blat.proc3825162.chain_370	1
scaffold_10	alt_acceptor	759623	759624	-	asmbl_4003	none	STRG.11959.2	1	STRG.11959.1,blat.proc3825154.chain_529	2
scaffold_1	starts_in_intron	20743261	20743261	-	asmbl_1202	none	blat.proc3825148.chain_1413	1	STRG.1420.1,blat.proc3825148.chain_1411	2
scaffold_8	alt_acceptor	11829367	11829368	+	asmbl_53273	none	STRG.10387.1	1	STRG.10387.2,blat.proc3825168.chain_2982	2
scaffold_23	alt_donor	2220329	2220330	-	asmbl_30712,asmbl_30713,asmbl_30717	none	STRG.25698.2,STRG.25698.5,STRG.25698.6	3	STRG.25698.1,STRG.25698.3	2
scaffold_7	retained_exon	8774004	8774090	+	asmbl_50051	none	STRG.9117.1,Trinity_GG_22376_c0_g1_i1	2	STRG.9117.2,STRG.9117.3,Trinity_GG_22376_c0_g1_i3	3
scaffold_5	alt_donor	17001581	17001582	+	asmbl_46123	none	STRG.6880.1,blat.proc3825166.chain_3043	2	STRG.6880.2,blat.proc3825166.chain_3042	2
scaffold_1	retained_intron	20024322	20024343	-	asmbl_1162	none	STRG.1371.1,Trinity_GG_749_c1_g1_i1,blat.proc3825148.chain_1378	3	blat.proc3825148.chain_1377	1
scaffold_16	spliced_intron	6149425	6149506	+	asmbl_16279,asmbl_16283	none	STRG.19354.1,blat.proc3825174.chain_141	2	blat.proc3825174.chain_144	1
scaffold_3	alternate_exon	11639032	11642530	+	asmbl_40365	none	blat.proc3825166.chain_109	1	STRG.3596.2	1
scaffold_26	alt_acceptor	5515226	5515227	+	asmbl_35012	none	STRG.28264.1,blat.proc3825178.chain_1319	2	STRG.28264.2	1
scaffold_12	retained_intron	14173452	14174310	+	asmbl_8064,asmbl_8065,asmbl_8066	none	STRG.15252.1,STRG.15252.2,STRG.15252.3,Trinity_GG_25713_c0_g1_i9,blat.proc3825172.chain_3,blat.proc3825172.chain_5,blat.proc3825172.chain_6	7	blat.proc3825172.chain_2	1
scaffold_21	spliced_intron	7422031	7422123	-	asmbl_27807,asmbl_27808,asmbl_27810,asmbl_27811	none	STRG.24271.2,blat.proc3825160.chain_1443,blat.proc3825160.chain_1444,blat.proc3825160.chain_1446,blat.proc3825160.chain_1448	5	blat.proc3825160.chain_1445	1
scaffold_20	alternate_exon	3256982	3262388	+	asmbl_26526	none	STRG.23056.1,blat.proc3825164.chain_12,blat.proc3825176.chain_218	3	STRG.23056.3	1
scaffold_5	spliced_intron	12915260	12915370	-	asmbl_44491,asmbl_44492	none	STRG.6524.1,STRG.6524.2,blat.proc3825150.chain_2709,blat.proc3825150.chain_2711	4	blat.proc3825150.chain_2710	1
scaffold_4	spliced_intron	16315868	16316019	+	asmbl_41962	none	STRG.5200.3,blat.proc3825166.chain_1502	2	STRG.5200.2,blat.proc3825166.chain_1499	2
scaffold_9	skipped_exon	12066703	12069664	-	asmbl_55349	none	STRG.11529.2	1	STRG.11529.3	1
scaffold_11	retained_intron	2446142	2446175	-	asmbl_6501,asmbl_6502	none	STRG.13398.2,STRG.13398.3,Trinity_GG_7448_c0_g1_i1,blat.proc3825154.chain_1876	4	STRG.13398.1	1
scaffold_2	starts_in_intron	182547	182547	+	asmbl_24085	none	Trinity_GG_18187_c0_g1_i2,blat.proc3825164.chain_1666	2	STRG.1512.1,blat.proc3825164.chain_1665	2
scaffold_6	alt_donor	8561086	8561087	-	asmbl_48566	none	STRG.7737.1	1	STRG.7737.2,blat.proc3825152.chain_25	2
scaffold_13	starts_in_intron	2291789	2291789	+	asmbl_10588	none	blat.proc3825172.chain_244	1	STRG.15546.1	1
scaffold_22	alt_acceptor	708587	708588	-	asmbl_29119	none	blat.proc3825160.chain_1886	1	STRG.24724.1,STRG.24724.2,blat.proc3825160.chain_1884,blat.proc3825160.chain_1885	4
scaffold_17	skipped_exon	9029724	9031727	-	asmbl_18144	none	STRG.20532.3	1	STRG.20532.1,STRG.20532.4,STRG.20532.5,STRG.20532.6	4
scaffold_9	starts_in_intron	9657541	9657541	+	asmbl_54219	none	Trinity_GG_23643_c0_g1_i11,blat.proc3825170.chain_159	2	STRG.11344.1,STRG.11344.2,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_158,blat.proc3825170.chain_160	6
scaffold_23	spliced_intron	10230166	10230202	+	asmbl_31844	none	STRG.26230.1	1	STRG.26230.2	1
scaffold_22	retained_exon	9721164	9721808	+	asmbl_30314	none	STRG.25308.3	1	STRG.25308.2	1
scaffold_4	alt_acceptor	17122455	17122456	-	asmbl_43254,asmbl_43255	none	STRG.5310.1,STRG.5310.4	2	STRG.5310.2,STRG.5310.3,Trinity_GG_2967_c0_g1_i1,Trinity_GG_2967_c0_g1_i2	4
scaffold_9	alternate_exon	6439346	6439587	-	asmbl_55060,asmbl_55061	none	STRG.11181.1,STRG.11181.3,blat.proc3825152.chain_3331,blat.proc3825152.chain_3333	4	STRG.11181.2,blat.proc3825152.chain_3332	2
scaffold_5	spliced_intron	13246847	13246949	+	asmbl_45867,asmbl_45868,asmbl_45870	none	STRG.6568.1,STRG.6568.2,STRG.6568.3,blat.proc3825166.chain_2749,blat.proc3825166.chain_2750	5	blat.proc3825166.chain_2751	1
scaffold_17	alternate_exon	9023378	9023436	-	asmbl_18136	none	STRG.20530.1	1	blat.proc3825158.chain_1546	1
scaffold_14	alt_acceptor	151364	151365	-	asmbl_12778,asmbl_12780	none	STRG.16711.2,STRG.16711.3,blat.proc3825156.chain_1521	3	STRG.16711.5	1
scaffold_19	skipped_exon	12957723	12958376	-	asmbl_22564,asmbl_22566	none	Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3404	4	STRG.22612.1	1
scaffold_1	ends_in_intron	4224979	4224979	+	asmbl_1645	none	Trinity_GG_17494_c2_g1_i1	1	STRG.254.1,STRG.254.2,blat.proc3825164.chain_377,blat.proc3825164.chain_378,blat.proc3825164.chain_379,blat.proc3825164.chain_380,blat.proc3825164.chain_381	7
scaffold_27	alt_acceptor	1554782	1554783	+	asmbl_36028,asmbl_36030	none	STRG.28644.3,STRG.28644.4	2	STRG.28644.1,STRG.28644.2,blat.proc3825178.chain_1762	3
scaffold_21	starts_in_intron	3099872	3099872	-	asmbl_27503	none	blat.proc3825160.chain_1018	1	STRG.23936.1,blat.proc3825160.chain_1017	2
scaffold_149	spliced_intron	113	1567	+	asmbl_13899	none	STRG.30192.2,blat.proc3825178.chain_3306	2	STRG.30192.1,Trinity_GG_34029_c0_g1_i1,Trinity_GG_34029_c0_g2_i1,Trinity_GG_34029_c1_g1_i1,Trinity_GG_34029_c2_g1_i1,blat.proc3825178.chain_3305,blat.proc3825178.chain_3308,blat.proc3825178.chain_3309,blat.proc3825178.chain_3310	9
scaffold_52	spliced_intron	6626	6929	+	asmbl_46529,asmbl_46530	none	STRG.30059.3,Trinity_GG_33948_c0_g1_i2,Trinity_GG_33948_c0_g1_i5,blat.proc3825178.chain_3179,blat.proc3825178.chain_3182	5	STRG.30059.1,STRG.30059.2,Trinity_GG_33948_c0_g1_i1,Trinity_GG_33948_c0_g1_i3,Trinity_GG_33948_c0_g1_i4,Trinity_GG_33948_c0_g1_i6,blat.proc3825178.chain_3180,blat.proc3825178.chain_3181,blat.proc3825178.chain_3183,blat.proc3825178.chain_3184	10
scaffold_26	ends_in_intron	9060295	9060295	-	asmbl_35762	none	Trinity_GG_15892_c0_g1_i2,blat.proc3825162.chain_1633	2	STRG.28472.1,blat.proc3825162.chain_1634	2
scaffold_5	alt_acceptor	4686034	4686035	-	asmbl_43989	none	blat.proc3825150.chain_2078	1	STRG.5929.1,STRG.5929.4,Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2075,blat.proc3825150.chain_2077,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084,blat.proc3825150.chain_2085	10
scaffold_15	alt_acceptor	14327865	14327866	-	asmbl_14717	none	Trinity_GG_10597_c0_g1_i1,blat.proc3825156.chain_3714	2	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2
scaffold_10	retained_intron	13919739	13919961	+	asmbl_3634	none	STRG.12982.2	1	STRG.12982.1,blat.proc3825170.chain_1583	2
scaffold_18	alternate_exon	7681335	7681383	+	asmbl_20776,asmbl_20777,asmbl_20782,asmbl_20783	none	STRG.21474.1,blat.proc3825174.chain_2512,blat.proc3825174.chain_2514,blat.proc3825174.chain_2518,blat.proc3825174.chain_2519	5	STRG.21474.4	1
scaffold_16	spliced_intron	1237655	1237855	-	asmbl_16928,asmbl_16930	none	STRG.19083.1,blat.proc3825158.chain_219,blat.proc3825158.chain_220	3	blat.proc3825158.chain_218,blat.proc3825158.chain_221	2
scaffold_13	ends_in_intron	7113264	7113264	+	asmbl_11017	none	blat.proc3825172.chain_764	1	STRG.16011.1,blat.proc3825172.chain_762	2
scaffold_11	skipped_exon	175992	176605	+	asmbl_5263,asmbl_5268,asmbl_5269	none	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	4	blat.proc3825170.chain_1810	1
scaffold_4	alternate_exon	3380143	3380419	+	asmbl_41191	none	blat.proc3825166.chain_751	1	STRG.4276.1,STRG.4276.2,blat.proc3825166.chain_748,blat.proc3825166.chain_749	4
scaffold_3	retained_intron	13179592	13179723	+	asmbl_40433	none	blat.proc3825166.chain_165	1	STRG.3682.1,blat.proc3825166.chain_163,blat.proc3825166.chain_166	3
scaffold_7	starts_in_intron	10283463	10283463	+	asmbl_50106	none	Trinity_GG_22418_c0_g1_i2,blat.proc3825168.chain_1709	2	STRG.9205.1,Trinity_GG_22418_c0_g2_i2,blat.proc3825168.chain_1708,blat.proc3825168.chain_1710	4
scaffold_24	spliced_intron	5949822	5950116	+	asmbl_32276	none	blat.proc3825176.chain_3679	1	STRG.26675.2,Trinity_GG_32084_c0_g1_i11,blat.proc3825176.chain_3672,blat.proc3825176.chain_3673,blat.proc3825176.chain_3674,blat.proc3825176.chain_3677	6
scaffold_23	retained_intron	6632390	6632499	+	asmbl_31637	none	blat.proc3825176.chain_2896	1	STRG.26012.1,STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2895,blat.proc3825176.chain_2897,blat.proc3825176.chain_2898	6
scaffold_16	alt_acceptor	303934	303935	-	asmbl_16850	none	STRG.19021.2	1	STRG.19021.1	1
scaffold_22	starts_in_intron	6877456	6877456	+	asmbl_30134	none	Trinity_GG_31148_c0_g1_i3,blat.proc3825176.chain_2136	2	STRG.25004.1,STRG.25004.2,blat.proc3825176.chain_2135,blat.proc3825176.chain_2137	4
scaffold_2	skipped_exon	6760394	6761638	-	asmbl_23233	none	STRG.2029.4	1	STRG.2029.1,STRG.2029.2,STRG.2029.3,blat.proc3825148.chain_2011,blat.proc3825148.chain_2012,blat.proc3825148.chain_2013	6
scaffold_10	alt_acceptor	13458240	13458241	-	asmbl_4882	none	STRG.12936.3	1	STRG.12936.1,blat.proc3825154.chain_1526	2
scaffold_27	retained_intron	6258393	6258777	+	asmbl_36393	none	STRG.29016.1,blat.proc3825178.chain_2190	2	STRG.29016.3,blat.proc3825178.chain_2191	2
scaffold_21	alt_acceptor	9930176	9930177	-	asmbl_27989,asmbl_27991	none	STRG.24461.1,STRG.24461.4,blat.proc3825160.chain_1641	3	STRG.24461.3	1
scaffold_18	starts_in_intron	1905338	1905338	-	asmbl_19655,asmbl_19658	none	Trinity_GG_11794_c1_g1_i1,blat.proc3825158.chain_2021	2	STRG.21081.6,STRG.21081.8,Trinity_GG_11794_c0_g2_i1,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2017	6
scaffold_18	retained_intron	4570648	4570746	+	asmbl_20531,asmbl_20534,asmbl_20535	none	STRG.21248.1,blat.proc3825174.chain_2216,blat.proc3825174.chain_2217,blat.proc3825174.chain_2218	4	STRG.21248.2,blat.proc3825174.chain_2219	2
scaffold_7	alternate_exon	1388753	1389204	-	asmbl_50724,asmbl_50725	none	STRG.8652.2,blat.proc3825152.chain_1123	2	blat.proc3825152.chain_1117	1
scaffold_13	retained_intron	5106775	5107098	-	asmbl_9672	none	STRG.15813.2,blat.proc3825156.chain_685	2	STRG.15813.1,blat.proc3825156.chain_686	2
scaffold_2	starts_in_intron	9302576	9302576	-	asmbl_23377	none	Trinity_GG_1214_c0_g1_i3,blat.proc3825148.chain_2207	2	STRG.2175.1,blat.proc3825148.chain_2205,blat.proc3825148.chain_2206	3
scaffold_6	alternate_exon	17646697	17647288	-	asmbl_49193	none	STRG.8458.3,Trinity_GG_4817_c0_g1_i1,blat.proc3825152.chain_885	3	STRG.8458.2	1
scaffold_300	spliced_intron	1280	1588	+	asmbl_40904	none	STRG.30272.2	1	STRG.30272.3,blat.proc3825178.chain_3363	2
scaffold_26	alternate_exon	5976991	5983272	+	asmbl_35061	none	STRG.28312.1,blat.proc3825178.chain_1430	2	STRG.28312.2	1
scaffold_6	retained_intron	5930657	5931098	+	asmbl_46985,asmbl_46986	none	STRG.7543.2,blat.proc3825166.chain_3725	2	STRG.7543.1,blat.proc3825166.chain_3726	2
scaffold_2	alt_donor	15686210	15686211	+	asmbl_25067	none	STRG.2522.1,Trinity_GG_18746_c0_g1_i2,blat.proc3825164.chain_2814	3	STRG.2522.2,STRG.2522.3,Trinity_GG_18746_c0_g1_i4,Trinity_GG_18746_c0_g1_i5,blat.proc3825164.chain_2816	5
scaffold_4	spliced_intron	3383834	3383996	+	asmbl_41188	none	STRG.4276.2,blat.proc3825166.chain_748	2	blat.proc3825166.chain_747	1
scaffold_7	spliced_intron	9311727	9311873	+	asmbl_50074,asmbl_50075,asmbl_50076	none	STRG.9144.1,Trinity_GG_22395_c0_g1_i2,Trinity_GG_22395_c0_g1_i3,Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669,blat.proc3825168.chain_1670,blat.proc3825168.chain_1671	7	Trinity_GG_22395_c0_g1_i1,blat.proc3825168.chain_1672	2
scaffold_1	alternate_exon	5732325	5732358	-	asmbl_294	none	STRG.388.1	1	STRG.388.2,blat.proc3825148.chain_359,blat.proc3825148.chain_360,blat.proc3825148.chain_361	4
scaffold_16	retained_intron	8070830	8070976	-	asmbl_17223	none	Trinity_GG_10901_c0_g1_i2,blat.proc3825158.chain_559	2	STRG.19451.1	1
scaffold_3	skipped_exon	18141547	18142686	-	asmbl_39594	none	STRG.4029.2	1	STRG.4029.1,STRG.4029.3,blat.proc3825150.chain_207,blat.proc3825150.chain_208	4
scaffold_11	retained_exon	13097278	13097364	+	asmbl_6033,asmbl_6034	none	STRG.14188.2,blat.proc3825170.chain_2747,blat.proc3825170.chain_2749	3	blat.proc3825170.chain_2746,blat.proc3825170.chain_2748	2
scaffold_13	retained_intron	2570469	2570603	+	asmbl_10623,asmbl_10627	none	STRG.15563.2,Trinity_GG_25871_c0_g1_i4,blat.proc3825172.chain_323,blat.proc3825172.chain_326	4	STRG.15563.1,STRG.15563.3,Trinity_GG_25871_c0_g1_i5,Trinity_GG_25871_c0_g1_i7,blat.proc3825172.chain_322,blat.proc3825172.chain_324,blat.proc3825172.chain_325,blat.proc3825172.chain_327	8
scaffold_27	retained_intron	3624875	3625095	+	asmbl_36213,asmbl_36215	none	Trinity_GG_33273_c0_g1_i2,Trinity_GG_33273_c0_g1_i5,blat.proc3825178.chain_2009,blat.proc3825178.chain_2011	4	STRG.28832.1,Trinity_GG_33273_c0_g1_i4,blat.proc3825178.chain_2007,blat.proc3825178.chain_2008,blat.proc3825178.chain_2010	5
scaffold_21	starts_in_intron	6438816	6438816	+	asmbl_28644	none	Trinity_GG_30694_c1_g1_i1,blat.proc3825176.chain_1359	2	STRG.24163.1,blat.proc3825176.chain_1358	2
scaffold_3	starts_in_intron	4887133	4887133	+	asmbl_40036	none	blat.proc3825164.chain_3431	1	STRG.3183.1	1
scaffold_9	alternate_exon	5667037	5667124	+	asmbl_54064	none	blat.proc3825168.chain_3689	1	STRG.11140.1,blat.proc3825168.chain_3686	2
scaffold_3	starts_in_intron	14699792	14699792	-	asmbl_39410	none	blat.proc3825150.chain_12	1	STRG.3818.1,STRG.3818.3,blat.proc3825150.chain_13	3
scaffold_11	alternate_exon	5655592	5655622	+	asmbl_5576	none	STRG.13631.2	1	STRG.13631.1,Trinity_GG_24810_c0_g1_i1,blat.proc3825170.chain_2161	3
scaffold_23	retained_intron	9517036	9517096	-	asmbl_31101	none	Trinity_GG_14629_c2_g1_i2,blat.proc3825160.chain_3314	2	blat.proc3825160.chain_3315	1
scaffold_28	alt_acceptor	4704615	4704616	-	asmbl_38222	none	STRG.29642.1,blat.proc3825162.chain_2827	2	STRG.29642.2	1
scaffold_25	alt_acceptor	7220041	7220042	-	asmbl_34390	none	STRG.27575.2	1	STRG.27575.1,blat.proc3825162.chain_972,blat.proc3825162.chain_973	3
scaffold_22	starts_in_intron	6128255	6128255	+	asmbl_30098,asmbl_30099,asmbl_30101	none	STRG.24968.6,Trinity_GG_31147_c1_g2_i1,blat.proc3825176.chain_2133	3	STRG.24968.1,STRG.24968.4,Trinity_GG_31147_c1_g1_i7,Trinity_GG_31147_c1_g1_i8,blat.proc3825176.chain_2125,blat.proc3825176.chain_2128,blat.proc3825176.chain_2129,blat.proc3825176.chain_2132	8
scaffold_1	retained_exon	9516030	9516099	-	asmbl_539	none	STRG.637.1,blat.proc3825148.chain_630	2	STRG.637.4,Trinity_GG_338_c0_g1_i2,blat.proc3825148.chain_629	3
scaffold_5	skipped_exon	14261743	14262734	+	asmbl_45914,asmbl_45915	none	STRG.6638.1,STRG.6638.2,blat.proc3825166.chain_2785,blat.proc3825166.chain_2788	4	STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2786,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	5
scaffold_18	spliced_intron	2834262	2835573	+	asmbl_20424	none	STRG.21142.4,blat.proc3825174.chain_2046	2	Trinity_GG_28933_c0_g1_i5,blat.proc3825174.chain_2054	2
scaffold_12	starts_in_intron	4419304	4419304	+	asmbl_7612	none	Trinity_GG_25400_c0_g1_i1,blat.proc3825170.chain_3194	2	STRG.14622.1,Trinity_GG_25400_c0_g1_i2,blat.proc3825170.chain_3193,blat.proc3825170.chain_3195	4
scaffold_6	retained_intron	13000458	13000538	-	asmbl_48863,asmbl_48864,asmbl_48866	none	blat.proc3825152.chain_491,blat.proc3825152.chain_493,blat.proc3825152.chain_496	3	STRG.8068.1,STRG.8068.2,STRG.8068.3,STRG.8068.4,STRG.8068.5,STRG.8068.6,blat.proc3825152.chain_488,blat.proc3825152.chain_492,blat.proc3825152.chain_495	9
scaffold_5	retained_exon	7708535	7708630	+	asmbl_45503	none	STRG.6149.2	1	STRG.6149.1,Trinity_GG_20669_c0_g1_i3,blat.proc3825166.chain_2364,blat.proc3825166.chain_2365,blat.proc3825166.chain_2366	5
scaffold_10	starts_in_intron	4050276	4050276	+	asmbl_3103	none	Trinity_GG_24107_c0_g1_i1,blat.proc3825170.chain_953	2	STRG.12245.1,Trinity_GG_24107_c0_g1_i2,Trinity_GG_24107_c0_g1_i3,blat.proc3825170.chain_954,blat.proc3825170.chain_955	5
scaffold_8	ends_in_intron	3604548	3604548	+	asmbl_52783	none	blat.proc3825168.chain_2401	1	STRG.9857.2,STRG.9857.3,blat.proc3825168.chain_2402,blat.proc3825168.chain_2403	4
scaffold_18	ends_in_intron	1714863	1714863	-	asmbl_19640	none	Trinity_GG_11769_c0_g1_i1,blat.proc3825158.chain_1941	2	STRG.21062.1,Trinity_GG_11769_c0_g1_i3,blat.proc3825158.chain_1942,blat.proc3825158.chain_1943	4
scaffold_15	alternate_exon	12871737	12871784	-	asmbl_14606	none	STRG.18739.1,Trinity_GG_10520_c0_g1_i1,blat.proc3825156.chain_3596	3	STRG.18739.2	1
scaffold_2	starts_in_intron	16088796	16088796	-	asmbl_23668	none	blat.proc3825148.chain_2434	1	STRG.2559.1,blat.proc3825148.chain_2435,blat.proc3825148.chain_2436,blat.proc3825148.chain_2437,blat.proc3825148.chain_2438	5
scaffold_5	spliced_intron	15528913	15529261	-	asmbl_44693	none	blat.proc3825150.chain_2884	1	STRG.6741.1,Trinity_GG_3757_c0_g1_i2,blat.proc3825150.chain_2883	3
scaffold_24	retained_intron	8954743	8954815	+	asmbl_32461,asmbl_32463	none	Trinity_GG_32185_c0_g1_i3,blat.proc3825178.chain_103,blat.proc3825178.chain_104	3	STRG.26917.1,Trinity_GG_32185_c0_g1_i1,blat.proc3825178.chain_102	3
scaffold_15	alt_donor	2797848	2797849	+	asmbl_15081	none	blat.proc3825172.chain_2742	1	STRG.18067.1,blat.proc3825172.chain_2743	2
scaffold_9	skipped_exon	5286019	5288508	+	asmbl_54022	none	STRG.11112.1,blat.proc3825168.chain_3570,blat.proc3825168.chain_3574	3	STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3572	3
scaffold_2	ends_in_intron	18551307	18551307	-	asmbl_23795	none	blat.proc3825148.chain_2617	1	STRG.2726.1,blat.proc3825148.chain_2616	2
scaffold_10	retained_intron	7276486	7276839	+	asmbl_3271,asmbl_3273,asmbl_3274	none	STRG.12540.3,STRG.12540.4,blat.proc3825170.chain_1149	3	STRG.12540.1,STRG.12540.2,blat.proc3825170.chain_1145,blat.proc3825170.chain_1147,blat.proc3825170.chain_1150	5
scaffold_6	retained_exon	9132526	9132633	+	asmbl_47212,asmbl_47213,asmbl_47220,asmbl_47222	none	STRG.7790.1,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_216	4	STRG.7790.2,blat.proc3825168.chain_211,blat.proc3825168.chain_219	3
scaffold_23	skipped_exon	5764489	5766611	-	asmbl_30942	none	STRG.25951.2,Trinity_GG_14536_c0_g2_i1,blat.proc3825160.chain_3141	3	STRG.25951.3,STRG.25951.4,Trinity_GG_14536_c0_g2_i2,blat.proc3825160.chain_3140	4
scaffold_15	skipped_exon	5741750	5743112	-	asmbl_14233	none	STRG.18261.2	1	STRG.18261.1,STRG.18261.3,STRG.18261.4	3
scaffold_17	spliced_intron	1602805	1602948	+	asmbl_18617	none	STRG.19999.1,blat.proc3825174.chain_884	2	blat.proc3825174.chain_883	1
scaffold_27	retained_intron	638419	638515	-	asmbl_36709	none	Trinity_GG_16002_c1_g1_i3,blat.proc3825162.chain_1844	2	STRG.28585.1,Trinity_GG_16002_c1_g1_i6,blat.proc3825162.chain_1843	3
scaffold_10	starts_in_intron	1081102	1081102	-	asmbl_4045	none	STRG.11997.1	1	STRG.11997.2,STRG.11997.3,Trinity_GG_6671_c0_g1_i3,blat.proc3825154.chain_549	4
scaffold_20	spliced_intron	2765358	2765473	-	asmbl_25671,asmbl_25673	none	STRG.23018.3,STRG.23018.4	2	Trinity_GG_12845_c0_g1_i2,blat.proc3825160.chain_97	2
scaffold_14	starts_in_intron	13896242	13896242	-	asmbl_13659	none	blat.proc3825156.chain_2448	1	STRG.17672.2,blat.proc3825156.chain_2445	2
scaffold_5	retained_intron	4948779	4949120	+	asmbl_45318,asmbl_45319	none	STRG.5954.2,STRG.5954.3	2	STRG.5954.1,Trinity_GG_20574_c0_g1_i1,blat.proc3825166.chain_2183	3
scaffold_12	alternate_exon	15434607	15437769	-	asmbl_9084,asmbl_9085	none	STRG.15351.1,STRG.15351.2,blat.proc3825156.chain_207,blat.proc3825156.chain_208	4	Trinity_GG_8614_c0_g1_i2,blat.proc3825156.chain_209	2
scaffold_11	retained_intron	1605150	1605247	-	asmbl_6444	none	STRG.13339.2	1	STRG.13339.1	1
scaffold_14	ends_in_intron	11387824	11387824	-	asmbl_13481	none	STRG.17477.4	1	STRG.17477.1,STRG.17477.2,STRG.17477.3,blat.proc3825156.chain_2291,blat.proc3825156.chain_2292,blat.proc3825156.chain_2294,blat.proc3825156.chain_2295	7
scaffold_11	alt_acceptor	2455361	2455362	-	asmbl_6503	none	STRG.13398.1,blat.proc3825154.chain_1877	2	STRG.13398.2	1
scaffold_2	retained_intron	16401404	16401522	+	asmbl_25134	none	STRG.2581.3	1	STRG.2581.1,STRG.2581.2,Trinity_GG_18772_c0_g1_i4,blat.proc3825164.chain_2865,blat.proc3825164.chain_2866	5
scaffold_18	ends_in_intron	6439236	6439236	-	asmbl_19901	none	Trinity_GG_11973_c1_g1_i1,blat.proc3825158.chain_2313	2	STRG.21371.1,blat.proc3825158.chain_2312	2
scaffold_1	skipped_exon	977974	978459	-	asmbl_43	none	STRG.59.1,Trinity_GG_38_c0_g1_i1,blat.proc3825148.chain_74	3	STRG.59.2	1
scaffold_1	spliced_intron	11678500	11678600	+	asmbl_2127	none	STRG.778.1	1	blat.proc3825164.chain_836	1
scaffold_28	retained_intron	3730685	3731676	-	asmbl_38161,asmbl_38164,asmbl_38165,asmbl_38166,asmbl_38168,asmbl_38171	none	STRG.29587.1,STRG.29587.2,STRG.29587.3,STRG.29587.4,blat.proc3825162.chain_2733,blat.proc3825162.chain_2737,blat.proc3825162.chain_2739	7	blat.proc3825162.chain_2734,blat.proc3825162.chain_2735,blat.proc3825162.chain_2736,blat.proc3825162.chain_2738	4
scaffold_1	spliced_intron	14427728	14428466	-	asmbl_921	none	STRG.1045.2,blat.proc3825148.chain_1046	2	STRG.1045.4,blat.proc3825148.chain_1050	2
scaffold_13	starts_in_intron	1229683	1229683	+	asmbl_10555	none	Trinity_GG_25867_c1_g1_i3,blat.proc3825172.chain_313	2	STRG.15494.2	1
scaffold_24	alt_donor	4808756	4808757	-	asmbl_32876	none	STRG.26612.2,blat.proc3825160.chain_3663	2	STRG.26612.1,blat.proc3825160.chain_3662	2
scaffold_15	alternate_exon	12871448	12871484	-	asmbl_14607	none	STRG.18739.2	1	STRG.18739.1,Trinity_GG_10520_c0_g1_i1,blat.proc3825156.chain_3596	3
scaffold_14	skipped_exon	3164010	3165418	+	asmbl_11909,asmbl_11920	none	STRG.16908.5,blat.proc3825172.chain_1614	2	STRG.16908.1,STRG.16908.3,STRG.16908.4,blat.proc3825172.chain_1612,blat.proc3825172.chain_1613	5
scaffold_4	skipped_exon	16538973	16540857	-	asmbl_43192,asmbl_43193	none	STRG.5230.2,blat.proc3825150.chain_1418	2	STRG.5230.1,blat.proc3825150.chain_1419	2
scaffold_7	spliced_intron	17339140	17339176	-	asmbl_51425,asmbl_51426	none	STRG.9613.2,STRG.9613.3	2	STRG.9613.1	1
scaffold_28	spliced_intron	233915	233981	+	asmbl_37255,asmbl_37257,asmbl_37258	none	STRG.29253.1,STRG.29253.2,blat.proc3825178.chain_2480,blat.proc3825178.chain_2482,blat.proc3825178.chain_2484	5	blat.proc3825178.chain_2481,blat.proc3825178.chain_2483	2
scaffold_12	starts_in_intron	14125907	14125907	-	asmbl_8990,asmbl_8992,asmbl_8993	none	STRG.15244.1,STRG.15244.3,blat.proc3825156.chain_79,blat.proc3825156.chain_80,blat.proc3825156.chain_81	5	STRG.15244.2,blat.proc3825156.chain_78	2
scaffold_8	retained_intron	18084680	18084897	-	asmbl_52503,asmbl_52505	none	STRG.10710.2,Trinity_GG_5955_c0_g1_i1,Trinity_GG_5955_c0_g1_i3,blat.proc3825152.chain_2980,blat.proc3825152.chain_2981	5	STRG.10710.1,STRG.10710.3,STRG.10710.4,STRG.10710.5,Trinity_GG_5955_c0_g1_i2,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2979,blat.proc3825152.chain_2982	8
scaffold_19	retained_intron	13220754	13221798	-	asmbl_22620,asmbl_22623	none	blat.proc3825158.chain_3432,blat.proc3825158.chain_3436	2	STRG.22653.1,STRG.22653.2,Trinity_GG_12588_c1_g1_i13,Trinity_GG_12588_c1_g1_i4,blat.proc3825158.chain_3428,blat.proc3825158.chain_3429,blat.proc3825158.chain_3430,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3435	10
scaffold_22	spliced_intron	5922960	5923153	+	asmbl_30068	none	STRG.24938.1,blat.proc3825176.chain_2045	2	STRG.24938.2,Trinity_GG_31103_c0_g1_i2,blat.proc3825176.chain_2046	3
scaffold_12	retained_intron	16247233	16247328	+	asmbl_8156,asmbl_8157	none	STRG.15380.3,Trinity_GG_25754_c0_g1_i1,blat.proc3825172.chain_84	3	STRG.15380.2,Trinity_GG_25754_c0_g1_i3,blat.proc3825172.chain_83	3
scaffold_1	spliced_intron	14277132	14277229	+	asmbl_2363,asmbl_2364,asmbl_2368	none	STRG.1023.1,STRG.1023.2,Trinity_GG_17932_c0_g1_i4,Trinity_GG_17932_c0_g1_i5,blat.proc3825164.chain_1200,blat.proc3825164.chain_1201	6	Trinity_GG_17932_c0_g1_i1,blat.proc3825164.chain_1203	2
scaffold_1	alt_acceptor	5619380	5619381	+	asmbl_1731,asmbl_1732	none	STRG.355.2,STRG.355.3	2	STRG.355.1	1
scaffold_7	alternate_exon	2474457	2474580	+	asmbl_49646	none	STRG.8684.1	1	STRG.8684.2,blat.proc3825168.chain_1198	2
scaffold_4	retained_intron	1618801	1618830	+	asmbl_41118	none	STRG.4192.1	1	STRG.4192.2	1
scaffold_23	alt_acceptor	7907664	7907665	+	asmbl_31737	none	STRG.26096.1,blat.proc3825176.chain_3045,blat.proc3825176.chain_3046	3	STRG.26096.2,blat.proc3825176.chain_3044	2
scaffold_6	alternate_exon	15471342	15471515	-	asmbl_49072	none	STRG.8300.1,blat.proc3825152.chain_673	2	STRG.8300.2,blat.proc3825152.chain_672	2
scaffold_5	alternate_exon	18698544	18699310	-	asmbl_44852	none	STRG.6997.2,Trinity_GG_3896_c1_g1_i2,blat.proc3825150.chain_3104	3	blat.proc3825150.chain_3102	1
scaffold_10	spliced_intron	17204036	17204220	-	asmbl_5042	none	blat.proc3825154.chain_1690	1	Trinity_GG_7334_c1_g2_i2,blat.proc3825154.chain_1689	2
scaffold_7	alt_acceptor	5916677	5916678	-	asmbl_50900	none	STRG.8897.3,blat.proc3825152.chain_1285	2	STRG.8897.2,blat.proc3825152.chain_1284	2
scaffold_4	starts_in_intron	8868791	8868791	+	asmbl_41592	none	Trinity_GG_19928_c0_g1_i2,blat.proc3825166.chain_1153	2	STRG.4701.1,Trinity_GG_19928_c0_g1_i1,blat.proc3825166.chain_1152	3
scaffold_22	retained_intron	4788211	4788482	-	asmbl_29276	none	STRG.24901.1,blat.proc3825160.chain_2096	2	STRG.24901.2,blat.proc3825160.chain_2095	2
scaffold_2	retained_intron	13754726	13754863	-	asmbl_23526	none	blat.proc3825148.chain_2332	1	STRG.2373.1,blat.proc3825148.chain_2330,blat.proc3825148.chain_2331	3
scaffold_20	ends_in_intron	10676820	10676820	+	asmbl_26982	none	blat.proc3825176.chain_786	1	STRG.23604.1,STRG.23604.2,blat.proc3825176.chain_785	3
scaffold_2	spliced_intron	888423	888576	+	asmbl_24128,asmbl_24134	none	STRG.1565.1,STRG.1565.5	2	Trinity_GG_18210_c1_g1_i8,blat.proc3825164.chain_1711,blat.proc3825164.chain_1712,blat.proc3825164.chain_1714,blat.proc3825164.chain_1715,blat.proc3825164.chain_1716	6
scaffold_7	spliced_intron	4046121	4046335	-	asmbl_50848	none	STRG.8803.3,blat.proc3825152.chain_1276	2	STRG.8803.2,Trinity_GG_5023_c0_g1_i1,blat.proc3825152.chain_1273	3
scaffold_27	alt_acceptor	7522240	7522241	+	asmbl_36464	none	STRG.29117.2,blat.proc3825178.chain_2324	2	STRG.29117.1,STRG.29117.3,STRG.29117.4	3
scaffold_3	alt_donor	6645141	6645142	+	asmbl_40098	none	STRG.3287.1,blat.proc3825164.chain_3535	2	STRG.3287.2	1
scaffold_9	skipped_exon	9657137	9657821	+	asmbl_54224	none	STRG.11344.2	1	STRG.11344.1,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_158	4
scaffold_5	alternate_exon	10142923	10142944	-	asmbl_44312	none	Trinity_GG_3552_c0_g1_i2,blat.proc3825150.chain_2506	2	STRG.6315.1	1
scaffold_16	starts_in_intron	14636078	14636078	+	asmbl_16699	none	Trinity_GG_28183_c0_g1_i1,blat.proc3825174.chain_739	2	STRG.19860.1,blat.proc3825174.chain_738	2
scaffold_8	spliced_intron	15734313	15734436	+	asmbl_53415,asmbl_53416	none	STRG.10577.1,Trinity_GG_23193_c0_g1_i2,blat.proc3825168.chain_3118,blat.proc3825168.chain_3119	4	blat.proc3825168.chain_3120	1
scaffold_21	spliced_intron	7508385	7508701	-	asmbl_27835	none	STRG.24283.1,blat.proc3825160.chain_1432	2	STRG.24283.2	1
scaffold_2	alternate_exon	5901551	5901609	-	asmbl_23162	none	STRG.1974.1,Trinity_GG_1069_c0_g1_i2,blat.proc3825148.chain_1909	3	STRG.1974.2,blat.proc3825148.chain_1908	2
scaffold_5	retained_intron	16320680	16320777	+	asmbl_46084	none	blat.proc3825166.chain_3012	1	STRG.6829.1,blat.proc3825166.chain_3010	2
scaffold_9	ends_in_intron	3275260	3275260	-	asmbl_54894	none	blat.proc3825152.chain_3188	1	STRG.10944.1	1
scaffold_4	starts_in_intron	12711257	12711257	+	asmbl_41738	none	STRG.4912.3,Trinity_GG_20041_c0_g1_i1,blat.proc3825166.chain_1324	3	STRG.4912.1,blat.proc3825166.chain_1322,blat.proc3825166.chain_1323	3
scaffold_11	alt_acceptor	12904974	12904975	-	asmbl_7101,asmbl_7102	none	STRG.14175.1,STRG.14175.2	2	blat.proc3825154.chain_2732	1
scaffold_27	ends_in_intron	129271	129271	-	asmbl_36638,asmbl_36639	none	STRG.28543.4,STRG.28543.5,blat.proc3825162.chain_1804,blat.proc3825162.chain_1805	4	STRG.28543.2,STRG.28543.3,Trinity_GG_15985_c0_g1_i5,blat.proc3825162.chain_1801	4
scaffold_20	spliced_intron	10787428	10787609	+	asmbl_26994	none	STRG.23606.3,blat.proc3825176.chain_797	2	STRG.23606.1,STRG.23606.2,Trinity_GG_30378_c0_g1_i4,blat.proc3825176.chain_798,blat.proc3825176.chain_799	5
scaffold_2	alt_acceptor	13385052	13385053	-	asmbl_23507	none	STRG.2355.1,Trinity_GG_1304_c0_g1_i1,blat.proc3825148.chain_2336	3	STRG.2355.2	1
scaffold_9	starts_in_intron	15268091	15268091	-	asmbl_55514	none	blat.proc3825154.chain_174	1	STRG.11721.1	1
scaffold_5	spliced_intron	17210617	17210897	-	asmbl_44795,asmbl_44796,asmbl_44797,asmbl_44798	none	STRG.6894.1,blat.proc3825150.chain_3039,blat.proc3825150.chain_3040,blat.proc3825150.chain_3041,blat.proc3825150.chain_3042	5	STRG.6894.2,blat.proc3825150.chain_3043	2
scaffold_7	ends_in_intron	13221317	13221317	+	asmbl_50327,asmbl_50332	none	STRG.9435.3,Trinity_GG_22553_c0_g1_i4,blat.proc3825168.chain_1954	3	STRG.9435.1,STRG.9435.2,Trinity_GG_22553_c0_g1_i1,Trinity_GG_22553_c0_g1_i2,blat.proc3825168.chain_1955,blat.proc3825168.chain_1956	6
scaffold_7	alt_donor	9744080	9744081	+	asmbl_50094	none	STRG.9166.2,blat.proc3825168.chain_1687	2	STRG.9166.1,blat.proc3825168.chain_1688	2
scaffold_15	retained_intron	13944525	13944639	-	asmbl_14683,asmbl_14684	none	blat.proc3825156.chain_3671,blat.proc3825156.chain_3672	2	blat.proc3825156.chain_3670,blat.proc3825156.chain_3674	2
scaffold_17	retained_intron	8318412	8318617	+	asmbl_18972,asmbl_18973	none	blat.proc3825174.chain_1203,blat.proc3825174.chain_1205	2	STRG.20456.2,blat.proc3825174.chain_1200,blat.proc3825174.chain_1206	3
scaffold_15	alt_donor	489816	489817	+	asmbl_14979	none	STRG.17911.2,Trinity_GG_27157_c0_g1_i2,blat.proc3825172.chain_2642	3	STRG.17911.1	1
scaffold_24	skipped_exon	4318881	4319606	+	asmbl_32187	none	STRG.26600.2	1	STRG.26600.1,STRG.26600.3	2
scaffold_10	alt_acceptor	14688189	14688190	+	asmbl_3652	none	STRG.13014.2	1	STRG.13014.1,STRG.13014.3,blat.proc3825170.chain_1571	3
scaffold_2	alternate_exon	4133155	4146992	+	asmbl_24337	none	STRG.1855.1,Trinity_GG_18318_c0_g1_i1,Trinity_GG_18318_c1_g1_i1,blat.proc3825164.chain_1938,blat.proc3825164.chain_1939	5	Trinity_GG_18314_c0_g1_i2,blat.proc3825164.chain_1928	2
scaffold_6	alt_acceptor	6942801	6942802	+	asmbl_47027	none	STRG.7602.2	1	STRG.7602.1,blat.proc3825168.chain_42,blat.proc3825168.chain_44	3
scaffold_21	ends_in_intron	2481554	2481554	-	asmbl_27465,asmbl_27466,asmbl_27468	none	STRG.23873.2,STRG.23873.3,STRG.23873.4,Trinity_GG_13318_c1_g1_i1,blat.proc3825160.chain_1024	5	STRG.23873.1,Trinity_GG_13318_c0_g1_i2,blat.proc3825160.chain_1023	3
scaffold_1	spliced_intron	18357390	18357458	+	asmbl_2560	none	STRG.1288.2	1	STRG.1288.1,Trinity_GG_18012_c0_g1_i2,blat.proc3825164.chain_1344	3
scaffold_13	retained_exon	15511059	15511198	+	asmbl_11513	none	STRG.16593.2	1	STRG.16593.1,Trinity_GG_26459_c0_g1_i1,blat.proc3825172.chain_1398,blat.proc3825172.chain_1400	4
scaffold_16	alternate_exon	7533047	7533132	+	asmbl_16348	none	STRG.19412.2	1	STRG.19412.1,blat.proc3825174.chain_293	2
scaffold_8	starts_in_intron	2686894	2686894	+	asmbl_52735	none	STRG.9810.2,Trinity_GG_22721_c1_g1_i2,blat.proc3825168.chain_2278	3	STRG.9810.1,blat.proc3825168.chain_2279	2
scaffold_16	alt_donor	7218097	7218098	-	asmbl_17177	none	STRG.19399.3	1	STRG.19399.1,STRG.19399.2	2
scaffold_5	spliced_intron	9582795	9582912	-	asmbl_44291	none	STRG.6280.1,blat.proc3825150.chain_2480	2	blat.proc3825150.chain_2481	1
scaffold_15	alt_acceptor	4095505	4095506	+	asmbl_15120	none	STRG.18154.2,blat.proc3825172.chain_2822	2	STRG.18154.1,blat.proc3825172.chain_2821	2
scaffold_13	ends_in_intron	15190245	15190245	-	asmbl_10230	none	blat.proc3825156.chain_1386	1	STRG.16560.1,blat.proc3825156.chain_1385	2
scaffold_6	ends_in_intron	12028782	12028782	-	asmbl_48776	none	Trinity_GG_4527_c0_g1_i3,blat.proc3825152.chain_363	2	STRG.7979.1,blat.proc3825152.chain_360,blat.proc3825152.chain_361	3
scaffold_8	alt_donor	4194690	4194691	-	asmbl_51759	none	blat.proc3825152.chain_2109	1	STRG.9896.2	1
scaffold_10	starts_in_intron	5179044	5179044	+	asmbl_3153	none	Trinity_GG_24127_c0_g1_i4,blat.proc3825170.chain_989	2	STRG.12343.1,STRG.12343.3,blat.proc3825170.chain_988,blat.proc3825170.chain_990,blat.proc3825170.chain_991	5
scaffold_7	ends_in_intron	12070008	12070008	+	asmbl_50214	none	blat.proc3825168.chain_1744	1	STRG.9312.1,blat.proc3825168.chain_1746	2
scaffold_5	alternate_exon	15450037	15451537	-	asmbl_44672	none	STRG.6730.1,blat.proc3825150.chain_2869	2	STRG.6730.2	1
scaffold_5	retained_intron	16206282	16206597	+	asmbl_46060	none	blat.proc3825166.chain_2952	1	STRG.6809.1,blat.proc3825166.chain_2951,blat.proc3825166.chain_2953,blat.proc3825166.chain_2954	4
scaffold_4	alternate_exon	3219610	3219666	-	asmbl_42414,asmbl_42415	none	STRG.4243.2,Trinity_GG_2320_c0_g1_i2,blat.proc3825150.chain_391	3	STRG.4243.1,Trinity_GG_2320_c0_g1_i1,blat.proc3825150.chain_390	3
scaffold_28	starts_in_intron	4267607	4267607	+	asmbl_37533	none	STRG.29620.2,blat.proc3825178.chain_2801	2	STRG.29620.1,Trinity_GG_33733_c0_g1_i1,blat.proc3825178.chain_2802	3
scaffold_22	alt_acceptor	6841027	6841028	-	asmbl_29336	none	blat.proc3825160.chain_2173,blat.proc3825160.chain_2176	2	blat.proc3825160.chain_2175	1
scaffold_22	alt_acceptor	8824536	8824537	+	asmbl_30289	none	STRG.25241.2	1	STRG.25241.4	1
scaffold_22	alt_acceptor	7345728	7345729	+	asmbl_30175	none	STRG.25068.2	1	STRG.25068.1,Trinity_GG_31184_c1_g1_i2,blat.proc3825176.chain_2192	3
scaffold_27	retained_intron	2436344	2436368	+	asmbl_36086	none	blat.proc3825178.chain_1891	1	STRG.28717.1	1
scaffold_14	retained_exon	404838	405058	+	asmbl_11748,asmbl_11749,asmbl_11751	none	STRG.16734.2,STRG.16734.5,STRG.16734.6,Trinity_GG_26526_c0_g1_i24,Trinity_GG_26526_c0_g1_i6,blat.proc3825172.chain_1502,blat.proc3825172.chain_1506,blat.proc3825172.chain_1513,blat.proc3825172.chain_1516	9	STRG.16734.3,STRG.16734.4,blat.proc3825172.chain_1508,blat.proc3825172.chain_1515	4
scaffold_12	retained_intron	2965837	2965925	-	asmbl_8338	none	Trinity_GG_8098_c0_g1_i2,blat.proc3825154.chain_3015	2	STRG.14532.1,blat.proc3825154.chain_3014	2
scaffold_24	alt_donor	6018329	6018330	-	asmbl_32921	none	STRG.26660.1,blat.proc3825162.chain_38	2	STRG.26660.2	1
scaffold_4	retained_intron	6304427	6304811	+	asmbl_41390,asmbl_41391,asmbl_41395	none	STRG.4503.2,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_920,blat.proc3825166.chain_921	6	STRG.4503.1,STRG.4503.3,Trinity_GG_19783_c0_g1_i1,blat.proc3825166.chain_919,blat.proc3825166.chain_922	5
scaffold_6	ends_in_intron	2885077	2885077	-	asmbl_48184	none	STRG.7285.2,blat.proc3825150.chain_3389	2	STRG.7285.1,blat.proc3825150.chain_3390	2
scaffold_19	ends_in_intron	12075176	12075176	+	asmbl_21737	none	blat.proc3825174.chain_3493	1	STRG.22530.1,blat.proc3825174.chain_3492	2
scaffold_27	spliced_intron	7277803	7277891	+	asmbl_36446	none	STRG.29091.2	1	STRG.29091.1,Trinity_GG_33354_c0_g1_i1,blat.proc3825178.chain_2188	3
scaffold_14	retained_intron	15453964	15454004	-	asmbl_13726	none	STRG.17777.1	1	STRG.17777.2	1
scaffold_23	skipped_exon	3233360	3234446	-	asmbl_30790	none	STRG.25755.3	1	STRG.25755.1,blat.proc3825160.chain_2917	2
scaffold_11	retained_intron	1285094	1285198	-	asmbl_6422	none	blat.proc3825154.chain_1871	1	STRG.13318.1,STRG.13318.2,blat.proc3825154.chain_1868,blat.proc3825154.chain_1869,blat.proc3825154.chain_1870	5
scaffold_2	alt_donor	8148394	8148395	-	asmbl_23317	none	STRG.2099.1,blat.proc3825148.chain_2126	2	STRG.2099.2	1
scaffold_19	skipped_exon	12393089	12394928	-	asmbl_22481,asmbl_22482	none	blat.proc3825158.chain_3326,blat.proc3825158.chain_3329	2	STRG.22570.1,STRG.22570.2,STRG.22570.3,blat.proc3825158.chain_3327,blat.proc3825158.chain_3328,blat.proc3825158.chain_3330	6
scaffold_5	retained_intron	10197865	10198044	-	asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44327	none	STRG.6323.1,STRG.6323.2,blat.proc3825150.chain_2527,blat.proc3825150.chain_2528,blat.proc3825150.chain_2529,blat.proc3825150.chain_2530,blat.proc3825150.chain_2533	7	STRG.6323.3	1
scaffold_6	spliced_intron	7937253	7938427	-	asmbl_48511,asmbl_48512,asmbl_48516,asmbl_48517	none	STRG.7676.2,STRG.7676.3,blat.proc3825152.chain_69,blat.proc3825152.chain_70	4	STRG.7676.1,blat.proc3825152.chain_71,blat.proc3825152.chain_72,blat.proc3825152.chain_73	4
scaffold_16	starts_in_intron	4138892	4138892	-	asmbl_17054	none	blat.proc3825158.chain_418	1	STRG.19229.2,STRG.19229.4,STRG.19229.6,blat.proc3825158.chain_421,blat.proc3825158.chain_423	5
scaffold_3180	alt_acceptor	410	411	-	asmbl_40944	none	blat.proc3825178.chain_3726	1	blat.proc3825176.chain_3319	1
scaffold_2	retained_intron	8055222	8055347	-	asmbl_23307	none	blat.proc3825148.chain_2120	1	STRG.2094.1,STRG.2094.2,STRG.2094.3,STRG.2094.4,blat.proc3825148.chain_2117,blat.proc3825148.chain_2118,blat.proc3825148.chain_2119,blat.proc3825148.chain_2121	8
scaffold_1	spliced_intron	13433544	13433617	-	asmbl_804	none	blat.proc3825148.chain_924	1	STRG.960.2,Trinity_GG_494_c0_g1_i2,blat.proc3825148.chain_925	3
scaffold_2	ends_in_intron	7132256	7132256	+	asmbl_24529	none	STRG.2046.1,Trinity_GG_18485_c1_g1_i1,blat.proc3825164.chain_2242	3	STRG.2046.2,STRG.2046.3,blat.proc3825164.chain_2239,blat.proc3825164.chain_2241	4
scaffold_11	retained_intron	3252760	3253016	-	asmbl_6544,asmbl_6545	none	STRG.13458.1,Trinity_GG_7550_c0_g1_i2,blat.proc3825154.chain_2049,blat.proc3825154.chain_2050	4	STRG.13458.2	1
scaffold_11	retained_intron	14532679	14533569	+	asmbl_6091,asmbl_6092	none	STRG.14252.1,Trinity_GG_25124_c0_g1_i4,blat.proc3825170.chain_2708,blat.proc3825170.chain_2709	4	STRG.14252.3,Trinity_GG_25124_c0_g1_i3,blat.proc3825170.chain_2707	3
scaffold_20	alternate_exon	239641	239858	-	asmbl_25469	none	STRG.22712.1,Trinity_GG_12681_c0_g1_i1	2	STRG.22712.2	1
scaffold_19	retained_intron	11470827	11471462	-	asmbl_22396,asmbl_22397	none	STRG.22481.1,STRG.22481.2,blat.proc3825158.chain_3256,blat.proc3825158.chain_3258	4	STRG.22481.4,blat.proc3825158.chain_3257	2
scaffold_2	ends_in_intron	7470542	7470542	-	asmbl_23262	none	Trinity_GG_1141_c0_g1_i2,Trinity_GG_34113_c0_g1_i1,blat.proc3825148.chain_2059	3	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i24,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2052,blat.proc3825148.chain_2057,blat.proc3825148.chain_2062,blat.proc3825148.chain_2063,blat.proc3825148.chain_2064	9
scaffold_4	alt_acceptor	8989644	8989645	-	asmbl_42800,asmbl_42801	none	STRG.4718.3,STRG.4718.4	2	STRG.4718.1,blat.proc3825150.chain_817	2
scaffold_13	spliced_intron	537327	537809	-	asmbl_9360,asmbl_9363	none	STRG.15447.2,Trinity_GG_8674_c0_g1_i1,blat.proc3825156.chain_327	3	STRG.15447.1,STRG.15447.3,Trinity_GG_8674_c0_g1_i2,Trinity_GG_8674_c0_g1_i3,Trinity_GG_8674_c0_g1_i6,blat.proc3825156.chain_325,blat.proc3825156.chain_326,blat.proc3825156.chain_328	8
scaffold_2	skipped_exon	17613910	17614818	+	asmbl_25186	none	STRG.2653.2	1	STRG.2653.1,Trinity_GG_18824_c1_g1_i1,blat.proc3825164.chain_2942,blat.proc3825164.chain_2945	4
scaffold_11	ends_in_intron	8282525	8282525	+	asmbl_5742	none	blat.proc3825170.chain_2367	1	STRG.13836.1,blat.proc3825170.chain_2366	2
scaffold_1	retained_intron	11800832	11801098	-	asmbl_668	none	STRG.796.3	1	blat.proc3825148.chain_791	1
scaffold_26	ends_in_intron	4113054	4113054	+	asmbl_34862	none	blat.proc3825178.chain_1045	1	STRG.28108.1	1
scaffold_13	spliced_intron	3735623	3735769	+	asmbl_10731,asmbl_10732,asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737	none	STRG.15695.1,STRG.15695.2,STRG.15695.3,Trinity_GG_25941_c0_g1_i7,Trinity_GG_25941_c0_g1_i9,blat.proc3825172.chain_441,blat.proc3825172.chain_443,blat.proc3825172.chain_444,blat.proc3825172.chain_446,blat.proc3825172.chain_448	10	Trinity_GG_25941_c0_g1_i8,blat.proc3825172.chain_445	2
scaffold_20	retained_intron	11695106	11695323	-	asmbl_26189	none	blat.proc3825160.chain_770	1	blat.proc3825160.chain_771	1
scaffold_3	retained_exon	16346338	16347311	-	asmbl_39496	none	STRG.3910.3,Trinity_GG_2173_c1_g1_i1,Trinity_GG_2173_c2_g1_i2,blat.proc3825150.chain_118,blat.proc3825150.chain_120	5	STRG.3910.1,blat.proc3825150.chain_114,blat.proc3825150.chain_115	3
scaffold_10	alternate_exon	5561718	5561911	-	asmbl_4374	none	STRG.12387.1,blat.proc3825154.chain_856	2	STRG.12387.2,blat.proc3825154.chain_857	2
scaffold_19	ends_in_intron	1116981	1116981	-	asmbl_22029	none	Trinity_GG_12207_c0_g1_i1,blat.proc3825158.chain_2730	2	STRG.21903.1,STRG.21903.4	2
scaffold_1	ends_in_intron	850047	850047	+	asmbl_1420,asmbl_1421	none	STRG.42.5,blat.proc3825164.chain_126,blat.proc3825164.chain_128	3	STRG.42.3,STRG.42.4	2
scaffold_1	alternate_exon	19356734	19358166	+	asmbl_2590	none	STRG.1351.1,Trinity_GG_18099_c0_g1_i1,blat.proc3825164.chain_1470	3	STRG.1351.2	1
scaffold_3	retained_exon	19803452	19803532	+	asmbl_40772	none	STRG.4097.1,blat.proc3825166.chain_568	2	STRG.4097.2,STRG.4097.3,STRG.4097.4	3
scaffold_21	alt_acceptor	2267906	2267907	+	asmbl_28374	none	STRG.23848.2	1	STRG.23848.1,blat.proc3825176.chain_1002	2
scaffold_18	starts_in_intron	3788423	3788423	+	asmbl_20480	none	Trinity_GG_28945_c0_g1_i2,blat.proc3825174.chain_2081	2	STRG.21196.1,Trinity_GG_28945_c0_g1_i3,blat.proc3825174.chain_2080	3
scaffold_11	ends_in_intron	15836156	15836156	+	asmbl_6135	none	blat.proc3825170.chain_2802	1	STRG.14321.3	1
scaffold_17	alt_donor	4809596	4809597	-	asmbl_17891	none	STRG.20217.2,blat.proc3825158.chain_1206	2	STRG.20217.1	1
scaffold_2	ends_in_intron	11448539	11448539	+	asmbl_24751	none	Trinity_GG_18586_c0_g1_i2,blat.proc3825164.chain_2452	2	STRG.2259.1	1
scaffold_8	alt_acceptor	5434184	5434185	+	asmbl_52885	none	blat.proc3825168.chain_2430	1	STRG.9974.1,STRG.9974.2,blat.proc3825168.chain_2432	3
scaffold_8	retained_intron	6161958	6162463	-	asmbl_51865	none	blat.proc3825152.chain_2270	1	STRG.10030.4,blat.proc3825152.chain_2276	2
scaffold_23	starts_in_intron	4899650	4899650	+	asmbl_31535	none	Trinity_GG_31591_c0_g1_i5,blat.proc3825176.chain_2818	2	STRG.25884.1,STRG.25884.2,STRG.25884.3,STRG.25884.4,Trinity_GG_31591_c0_g1_i2,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817,blat.proc3825176.chain_2819	10
scaffold_3	ends_in_intron	14012153	14012153	+	asmbl_40490	none	blat.proc3825166.chain_258	1	STRG.3746.1,Trinity_GG_19419_c0_g1_i2,blat.proc3825166.chain_257	3
scaffold_1	ends_in_intron	14363969	14363969	-	asmbl_906	none	STRG.1037.4,blat.proc3825148.chain_1030	2	STRG.1037.2,blat.proc3825148.chain_1034	2
scaffold_17	skipped_exon	1289407	1290515	-	asmbl_17686	none	STRG.19964.3	1	STRG.19964.2	1
scaffold_2	ends_in_intron	924731	924731	+	asmbl_24157,asmbl_24159	none	STRG.1570.4,blat.proc3825164.chain_1629	2	STRG.1570.3,STRG.1570.6,blat.proc3825164.chain_1630,blat.proc3825164.chain_1631	4
scaffold_1	ends_in_intron	20342228	20342228	+	asmbl_2615	none	blat.proc3825164.chain_1589	1	STRG.1396.1,STRG.1396.2,STRG.1396.3,blat.proc3825164.chain_1591,blat.proc3825164.chain_1594,blat.proc3825164.chain_1596,blat.proc3825164.chain_1597	7
scaffold_13	alt_acceptor	11850455	11850456	-	asmbl_10107	none	STRG.16319.2	1	STRG.16319.1	1
scaffold_14	spliced_intron	11550073	11550179	+	asmbl_12386	none	STRG.17490.1,blat.proc3825172.chain_2213	2	STRG.17490.2	1
scaffold_7	alternate_exon	11920864	11920930	-	asmbl_51177	none	STRG.9299.3,blat.proc3825152.chain_1650	2	STRG.9299.2,Trinity_GG_5242_c0_g1_i3,blat.proc3825152.chain_1651	3
scaffold_12	starts_in_intron	4607453	4607453	+	asmbl_7616	none	blat.proc3825170.chain_3204	1	STRG.14638.1,blat.proc3825170.chain_3203	2
scaffold_1	spliced_intron	20989024	20989300	+	asmbl_2671	none	blat.proc3825164.chain_1566	1	STRG.1435.1,Trinity_GG_18143_c0_g1_i1,blat.proc3825164.chain_1564	3
scaffold_21	starts_in_intron	1656209	1656209	+	asmbl_28348,asmbl_28349	none	Trinity_GG_30526_c0_g1_i11,Trinity_GG_30526_c0_g1_i4,blat.proc3825176.chain_1060,blat.proc3825176.chain_1061	4	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058,blat.proc3825176.chain_1059	7
scaffold_22	alternate_exon	6527882	6527918	+	asmbl_30121	none	STRG.24998.2	1	STRG.24998.1,blat.proc3825176.chain_2110	2
scaffold_19	alternate_exon	9451325	9454602	+	asmbl_21594	none	STRG.22377.1,blat.proc3825174.chain_3388	2	Trinity_GG_29686_c1_g1_i4,blat.proc3825174.chain_3387	2
scaffold_26	spliced_intron	4110627	4110718	+	asmbl_34859	none	STRG.28106.1,blat.proc3825178.chain_1160	2	STRG.28106.2,STRG.28106.3	2
scaffold_1	alt_donor	17861880	17861881	-	asmbl_1065	none	STRG.1250.1,blat.proc3825148.chain_1197	2	STRG.1250.2	1
scaffold_5	alternate_exon	18705518	18707286	-	asmbl_44858	none	STRG.6996.1	1	STRG.6996.2	1
scaffold_22	retained_intron	11473745	11473840	+	asmbl_30392	none	blat.proc3825176.chain_2426	1	STRG.25490.1,Trinity_GG_31348_c0_g1_i2,blat.proc3825176.chain_2427	3
scaffold_6	skipped_exon	2881102	2881381	-	asmbl_48180	none	STRG.7287.2,blat.proc3825150.chain_3407	2	STRG.7287.1,blat.proc3825150.chain_3405	2
scaffold_25	spliced_intron	4594574	4594648	+	asmbl_33524	none	STRG.27397.1,Trinity_GG_32387_c0_g1_i1,blat.proc3825178.chain_448	3	STRG.27397.2,Trinity_GG_32387_c0_g1_i2,blat.proc3825178.chain_449	3
scaffold_4	spliced_intron	6129993	6130181	-	asmbl_42653	none	STRG.4483.2	1	STRG.4483.1,Trinity_GG_2512_c0_g2_i1	2
scaffold_8	retained_intron	17815077	17815245	+	asmbl_53509,asmbl_53512	none	blat.proc3825168.chain_3180,blat.proc3825168.chain_3181	2	STRG.10693.1,STRG.10693.2,Trinity_GG_23223_c0_g1_i5,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3182,blat.proc3825168.chain_3183,blat.proc3825168.chain_3184	7
scaffold_1	retained_intron	14181858	14181932	+	asmbl_2338	none	STRG.1002.2	1	STRG.1002.1,blat.proc3825164.chain_1173,blat.proc3825164.chain_1174,blat.proc3825164.chain_1175	4
scaffold_19	skipped_exon	13748885	13749296	+	asmbl_21886	none	STRG.22694.3	1	STRG.22694.1,STRG.22694.2,blat.proc3825174.chain_3684	3
scaffold_4	alt_donor	17419134	17419135	-	asmbl_43262	none	STRG.5328.4,Trinity_GG_2975_c0_g1_i1,blat.proc3825150.chain_1501	3	STRG.5328.1,STRG.5328.2	2
scaffold_24	alt_donor	1946131	1946132	-	asmbl_32755,asmbl_32757	none	STRG.26421.1,STRG.26421.2	2	STRG.26421.4	1
scaffold_6	spliced_intron	17886425	17886621	+	asmbl_47797	none	STRG.8482.3,Trinity_GG_21935_c0_g1_i2,blat.proc3825168.chain_877	3	STRG.8482.2,Trinity_GG_21935_c0_g1_i3,blat.proc3825168.chain_874	3
scaffold_6	retained_intron	5644143	5644250	-	asmbl_48429	none	Trinity_GG_4277_c0_g1_i1,blat.proc3825150.chain_3733	2	STRG.7526.1,blat.proc3825150.chain_3734,blat.proc3825150.chain_3735,blat.proc3825150.chain_3736	4
scaffold_19	ends_in_intron	3558329	3558329	+	asmbl_21330	none	Trinity_GG_29503_c0_g1_i3,blat.proc3825174.chain_3078	2	STRG.22045.1,STRG.22045.2,STRG.22045.3,STRG.22045.4	4
scaffold_6	skipped_exon	2744478	2745595	-	asmbl_48156	none	blat.proc3825150.chain_3317	1	STRG.7271.1,Trinity_GG_4023_c0_g1_i1	2
scaffold_16	starts_in_intron	3569311	3569311	-	asmbl_16988	none	Trinity_GG_10767_c0_g1_i6,blat.proc3825158.chain_303	2	STRG.19175.1,STRG.19175.2,STRG.19175.3,Trinity_GG_10767_c0_g1_i5,Trinity_GG_10767_c0_g1_i8,blat.proc3825158.chain_305,blat.proc3825158.chain_306	7
scaffold_23	ends_in_intron	10021454	10021454	+	asmbl_31826	none	blat.proc3825176.chain_3104	1	STRG.26206.1,blat.proc3825176.chain_3103,blat.proc3825176.chain_3106	3
scaffold_11	retained_intron	8398703	8399332	+	asmbl_5761,asmbl_5762,asmbl_5767,asmbl_5768	none	STRG.13857.2,Trinity_GG_24940_c0_g1_i11,blat.proc3825170.chain_2391,blat.proc3825170.chain_2393,blat.proc3825170.chain_2395,blat.proc3825170.chain_2396,blat.proc3825170.chain_2397	7	STRG.13857.3,blat.proc3825170.chain_2394	2
scaffold_14	skipped_exon	11220457	11221809	-	asmbl_13456	none	STRG.17457.1,blat.proc3825156.chain_2269	2	blat.proc3825156.chain_2268	1
scaffold_15	spliced_intron	5454907	5455211	-	asmbl_14208,asmbl_14209,asmbl_14213,asmbl_14214	none	STRG.18235.1,STRG.18235.2,blat.proc3825156.chain_3103,blat.proc3825156.chain_3104,blat.proc3825156.chain_3105,blat.proc3825156.chain_3106	6	Trinity_GG_10273_c0_g1_i6,blat.proc3825156.chain_3107	2
scaffold_9	alt_acceptor	7780591	7780592	+	asmbl_54134,asmbl_54138,asmbl_54139	none	blat.proc3825170.chain_70,blat.proc3825170.chain_71,blat.proc3825170.chain_77	3	STRG.11230.1,blat.proc3825170.chain_73	2
scaffold_23	ends_in_intron	10889333	10889333	+	asmbl_31886	none	STRG.26287.2	1	STRG.26287.1,blat.proc3825176.chain_3250	2
scaffold_22	alt_donor	11477631	11477632	+	asmbl_30394	none	STRG.25495.1,Trinity_GG_31379_c0_g1_i1,blat.proc3825176.chain_2477	3	STRG.25495.2,Trinity_GG_31379_c0_g1_i3,blat.proc3825176.chain_2479	3
scaffold_2	alternate_exon	17614275	17614325	+	asmbl_25189	none	blat.proc3825164.chain_2944	1	STRG.2653.2,STRG.2653.3,blat.proc3825164.chain_2943	3
scaffold_20	ends_in_intron	2142093	2142093	+	asmbl_26476	none	blat.proc3825176.chain_149	1	STRG.22956.1,blat.proc3825176.chain_150	2
scaffold_20	alt_acceptor	8339134	8339135	-	asmbl_25980	none	Trinity_GG_13065_c0_g1_i10,blat.proc3825160.chain_511	2	STRG.23378.1,STRG.23378.2,STRG.23378.3,blat.proc3825160.chain_506,blat.proc3825160.chain_507,blat.proc3825160.chain_508,blat.proc3825160.chain_509,blat.proc3825160.chain_510,blat.proc3825160.chain_512	9
scaffold_1	alt_donor	11568004	11568005	-	asmbl_633,asmbl_635,asmbl_637	none	STRG.767.2,blat.proc3825148.chain_743,blat.proc3825148.chain_745	3	STRG.767.1,blat.proc3825148.chain_744,blat.proc3825148.chain_746,blat.proc3825148.chain_747	4
scaffold_28	retained_intron	7720499	7721514	+	asmbl_37704	none	STRG.29845.2,Trinity_GG_33846_c1_g1_i6,blat.proc3825178.chain_3017,blat.proc3825178.chain_3021	4	blat.proc3825178.chain_3018	1
scaffold_5	spliced_intron	188746	188784	+	asmbl_45086	none	STRG.5587.2	1	STRG.5587.1,STRG.5587.3,STRG.5587.4,STRG.5587.5,Trinity_GG_20359_c0_g1_i2,blat.proc3825166.chain_1844	6
scaffold_27	starts_in_intron	2816676	2816676	+	asmbl_36124,asmbl_36125	none	STRG.28763.5,blat.proc3825178.chain_1924	2	STRG.28763.1,STRG.28763.2,STRG.28763.3,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1925	7
scaffold_14	skipped_exon	6282250	6283420	+	asmbl_12059	none	STRG.17079.4,blat.proc3825172.chain_1850	2	STRG.17079.1,STRG.17079.2,STRG.17079.3,blat.proc3825172.chain_1848,blat.proc3825172.chain_1849,blat.proc3825172.chain_1853	6
scaffold_12	alt_acceptor	9538300	9538301	-	asmbl_8677	none	STRG.14935.1,blat.proc3825154.chain_3443	2	STRG.14935.2	1
scaffold_18	spliced_intron	8913428	8913585	-	asmbl_20046,asmbl_20047	none	STRG.21558.6,STRG.21558.7,blat.proc3825158.chain_2449	3	STRG.21558.3,STRG.21558.4,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2447,blat.proc3825158.chain_2451,blat.proc3825158.chain_2453	7
scaffold_14	alternate_exon	15584767	15587053	+	asmbl_12629	none	STRG.17811.6,Trinity_GG_27113_c1_g1_i1,blat.proc3825172.chain_2558	3	STRG.17811.4	1
scaffold_13	spliced_intron	3430216	3430310	+	asmbl_10689,asmbl_10690,asmbl_10691	none	STRG.15654.1,STRG.15654.2,Trinity_GG_25887_c0_g1_i1,Trinity_GG_25887_c0_g1_i3,Trinity_GG_25887_c0_g1_i4,blat.proc3825172.chain_351,blat.proc3825172.chain_352,blat.proc3825172.chain_354	8	Trinity_GG_25887_c0_g1_i5,blat.proc3825172.chain_353	2
scaffold_13	spliced_intron	14964496	14964531	+	asmbl_11479	none	STRG.16542.3	1	STRG.16542.1,Trinity_GG_26401_c3_g1_i1	2
scaffold_27	alt_acceptor	5802250	5802251	-	asmbl_37029	none	STRG.28984.2	1	STRG.28984.1,blat.proc3825162.chain_2197,blat.proc3825162.chain_2198	3
scaffold_10	spliced_intron	8901030	8901211	-	asmbl_4636	none	STRG.12638.1	1	STRG.12638.2	1
scaffold_24	retained_intron	5940367	5940483	+	asmbl_32255,asmbl_32262,asmbl_32264,asmbl_32266,asmbl_32269	none	Trinity_GG_32084_c0_g1_i2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3665,blat.proc3825176.chain_3670,blat.proc3825176.chain_3672,blat.proc3825176.chain_3680	6	blat.proc3825176.chain_3666	1
scaffold_17	starts_in_intron	8221146	8221146	+	asmbl_18953,asmbl_18954	none	STRG.20449.3,STRG.20449.4	2	STRG.20449.1,STRG.20449.2,blat.proc3825174.chain_1239,blat.proc3825174.chain_1242,blat.proc3825174.chain_1244,blat.proc3825174.chain_1245,blat.proc3825174.chain_1248	7
scaffold_22	spliced_intron	322655	323132	+	asmbl_29839,asmbl_29842	none	STRG.24686.3,blat.proc3825176.chain_1816	2	STRG.24686.2,blat.proc3825176.chain_1817	2
scaffold_4	starts_in_intron	3299071	3299071	+	asmbl_41172	none	Trinity_GG_19672_c0_g2_i1,blat.proc3825166.chain_688	2	STRG.4259.1,blat.proc3825166.chain_686,blat.proc3825166.chain_687	3
scaffold_19	spliced_intron	13637265	13638466	-	asmbl_22667	none	STRG.22686.1	1	STRG.22686.2,Trinity_GG_12640_c0_g2_i1,blat.proc3825158.chain_3525,blat.proc3825158.chain_3526	4
scaffold_1	spliced_intron	14181858	14181932	+	asmbl_2335,asmbl_2336,asmbl_2337	none	STRG.1002.1,blat.proc3825164.chain_1173,blat.proc3825164.chain_1174,blat.proc3825164.chain_1175	4	STRG.1002.2	1
scaffold_13	starts_in_intron	1237165	1237165	+	asmbl_10548	none	STRG.15494.7	1	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_311,blat.proc3825172.chain_312	10
scaffold_12	retained_intron	12451819	12451938	+	asmbl_8006	none	STRG.15151.1	1	STRG.15151.3	1
scaffold_5	retained_intron	12842021	12842175	+	asmbl_45824,asmbl_45826	none	STRG.6517.2,STRG.6517.3,Trinity_GG_20807_c0_g1_i3,blat.proc3825166.chain_2622	4	STRG.6517.1,STRG.6517.4,Trinity_GG_20807_c0_g1_i1,Trinity_GG_20807_c0_g1_i2,blat.proc3825166.chain_2619,blat.proc3825166.chain_2620,blat.proc3825166.chain_2621	7
scaffold_14	alt_donor	15517181	15517182	-	asmbl_13729	none	STRG.17792.3	1	STRG.17792.2	1
scaffold_5	alternate_exon	5739578	5739687	+	asmbl_45360	none	STRG.5992.7,Trinity_GG_20545_c0_g1_i4,blat.proc3825166.chain_2132	3	STRG.5992.3,STRG.5992.4,STRG.5992.5,STRG.5992.6,blat.proc3825166.chain_2131,blat.proc3825166.chain_2133,blat.proc3825166.chain_2135	7
scaffold_27	alternate_exon	973551	975044	+	asmbl_35971	none	Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1717	2	Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	2
scaffold_4	retained_exon	4096330	4096420	+	asmbl_41217,asmbl_41218,asmbl_41219,asmbl_41220,asmbl_41221,asmbl_41229	none	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,blat.proc3825166.chain_703,blat.proc3825166.chain_704,blat.proc3825166.chain_705,blat.proc3825166.chain_707	8	blat.proc3825166.chain_709	1
scaffold_25	starts_in_intron	5557096	5557096	-	asmbl_34258	none	STRG.27452.2,blat.proc3825162.chain_835	2	STRG.27452.1,STRG.27452.3,blat.proc3825162.chain_834	3
scaffold_2	starts_in_intron	10168722	10168722	-	asmbl_23408	none	Trinity_GG_1225_c1_g1_i3,blat.proc3825148.chain_2222	2	STRG.2206.2,STRG.2206.3,Trinity_GG_1225_c1_g1_i5,blat.proc3825148.chain_2221	4
scaffold_1	alt_donor	11457415	11457416	-	asmbl_617	none	STRG.759.1,blat.proc3825148.chain_673	2	STRG.759.2,blat.proc3825148.chain_674	2
scaffold_14	starts_in_intron	12628404	12628404	-	asmbl_13584	none	STRG.17582.4	1	STRG.17582.1,STRG.17582.2,STRG.17582.3,blat.proc3825156.chain_2416,blat.proc3825156.chain_2417,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2420,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	11
scaffold_8	retained_intron	7482867	7483073	-	asmbl_51914	none	blat.proc3825152.chain_2257	1	STRG.10078.1,blat.proc3825152.chain_2256,blat.proc3825152.chain_2259	3
scaffold_25	alternate_exon	2089900	2097721	-	asmbl_34060	none	STRG.27219.1	1	STRG.27219.2,blat.proc3825162.chain_615	2
scaffold_10	alt_acceptor	9344983	9344984	-	asmbl_4685	none	STRG.12672.2	1	STRG.12672.1,STRG.12672.3,Trinity_GG_7075_c0_g1_i1,blat.proc3825154.chain_1279	4
scaffold_3	retained_exon	935830	935956	-	asmbl_38684	none	blat.proc3825148.chain_2837	1	STRG.2916.1	1
scaffold_4	skipped_exon	1877027	1879616	+	asmbl_41134	none	STRG.4206.2,blat.proc3825166.chain_668	2	STRG.4206.1,blat.proc3825166.chain_669	2
scaffold_20	ends_in_intron	12075689	12075689	-	asmbl_26215	none	Trinity_GG_13163_c0_g1_i1,blat.proc3825160.chain_689	2	STRG.23706.1,blat.proc3825160.chain_685,blat.proc3825160.chain_686,blat.proc3825160.chain_687,blat.proc3825160.chain_688	5
scaffold_19	spliced_intron	10820688	10821270	+	asmbl_21660	none	STRG.22421.2,Trinity_GG_29712_c0_g1_i1,blat.proc3825174.chain_3432	3	STRG.22421.1,blat.proc3825174.chain_3431,blat.proc3825174.chain_3434	3
scaffold_21	starts_in_intron	9925010	9925010	-	asmbl_27990	none	blat.proc3825160.chain_1642	1	STRG.24461.1,STRG.24461.2,STRG.24461.3,STRG.24461.4,STRG.24461.5,blat.proc3825160.chain_1641,blat.proc3825160.chain_1643	7
scaffold_4	starts_in_intron	4689416	4689416	+	asmbl_41305	none	blat.proc3825166.chain_815	1	STRG.4379.1,blat.proc3825166.chain_813,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_818,blat.proc3825166.chain_819,blat.proc3825166.chain_820	7
scaffold_10	alt_acceptor	17687724	17687725	+	asmbl_3791	none	STRG.13223.2	1	STRG.13223.1	1
scaffold_5	alternate_exon	15893539	15893579	+	asmbl_46027,asmbl_46028	none	STRG.6778.2,STRG.6778.3,blat.proc3825166.chain_2866,blat.proc3825166.chain_2867	4	STRG.6778.1	1
scaffold_28	retained_exon	1432997	1433103	-	asmbl_37990	none	STRG.29342.2,blat.proc3825162.chain_2527	2	STRG.29342.1,STRG.29342.3,blat.proc3825162.chain_2528	3
scaffold_5	alt_acceptor	17843988	17843989	-	asmbl_44816	none	STRG.6930.1,Trinity_GG_3869_c0_g1_i1,blat.proc3825150.chain_3069	3	STRG.6930.2	1
scaffold_13	alternate_exon	14180617	14180791	-	asmbl_10174	none	STRG.16459.1,blat.proc3825156.chain_1256	2	STRG.16459.2,blat.proc3825156.chain_1255	2
scaffold_17	retained_exon	2355383	2355463	+	asmbl_18637,asmbl_18638,asmbl_18640	none	STRG.20030.1,STRG.20030.2,STRG.20030.4,blat.proc3825174.chain_907	4	STRG.20030.6,blat.proc3825174.chain_909	2
scaffold_5	alternate_exon	1097121	1097182	-	asmbl_43822	none	STRG.5661.3	1	STRG.5661.1	1
scaffold_1	alternate_exon	22369668	22371479	+	asmbl_2687,asmbl_2688	none	STRG.1491.2,STRG.1491.5	2	STRG.1491.6	1
scaffold_7	alternate_exon	12451155	12451321	-	asmbl_51226	none	Trinity_GG_5252_c0_g1_i10,blat.proc3825152.chain_1688	2	STRG.9354.1,STRG.9354.2,STRG.9354.3,Trinity_GG_5252_c0_g1_i20	4
scaffold_4	alternate_exon	4552860	4556731	+	asmbl_41287,asmbl_41288	none	STRG.4367.1,STRG.4367.3,Trinity_GG_19722_c2_g1_i1,blat.proc3825166.chain_778,blat.proc3825166.chain_779,blat.proc3825166.chain_782	6	STRG.4367.2	1
scaffold_1	alt_acceptor	1908010	1908011	+	asmbl_1517,asmbl_1518	none	STRG.119.1,blat.proc3825164.chain_170,blat.proc3825164.chain_172	3	STRG.119.2,STRG.119.3	2
scaffold_5	alternate_exon	18271011	18271081	+	asmbl_46246	none	STRG.6967.2,Trinity_GG_21137_c0_g1_i1,blat.proc3825166.chain_3163	3	STRG.6967.1,Trinity_GG_21137_c0_g1_i2,blat.proc3825166.chain_3164	3
scaffold_21	alternate_exon	7727811	7734029	+	asmbl_28765	none	STRG.24316.1,Trinity_GG_30787_c0_g1_i1,blat.proc3825176.chain_1536	3	STRG.24316.2	1
scaffold_11	alt_acceptor	6712070	6712071	-	asmbl_6737	none	STRG.13716.2	1	STRG.13716.1,STRG.13716.4,blat.proc3825154.chain_2286,blat.proc3825154.chain_2287	4
scaffold_2	alt_acceptor	15334057	15334058	+	asmbl_25029	none	STRG.2483.2,Trinity_GG_18716_c0_g1_i2	2	STRG.2483.1,Trinity_GG_18716_c0_g1_i1	2
scaffold_5	spliced_intron	9086017	9086102	+	asmbl_45599,asmbl_45602,asmbl_45603,asmbl_45605,asmbl_45607	none	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479	6	blat.proc3825166.chain_2481	1
scaffold_10	starts_in_intron	13047393	13047393	-	asmbl_4853,asmbl_4854	none	blat.proc3825154.chain_1517,blat.proc3825154.chain_1518	2	STRG.12914.1,STRG.12914.2	2
scaffold_22	spliced_intron	485520	485599	+	asmbl_29854,asmbl_29856	none	STRG.24694.1,Trinity_GG_30924_c0_g1_i3,blat.proc3825176.chain_1751,blat.proc3825176.chain_1752	4	blat.proc3825176.chain_1750	1
scaffold_14	retained_intron	15565628	15565681	+	asmbl_12619,asmbl_12622,asmbl_12623,asmbl_12625	none	STRG.17796.2,STRG.17796.3,blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	5	STRG.17796.1	1
scaffold_16	alt_donor	9632362	9632363	-	asmbl_17291	none	STRG.19561.1,Trinity_GG_10988_c0_g1_i1,blat.proc3825158.chain_693	3	Trinity_GG_10988_c0_g1_i2,blat.proc3825158.chain_694	2
scaffold_13	retained_intron	7085089	7085351	-	asmbl_9848	none	blat.proc3825156.chain_979	1	STRG.16012.1,blat.proc3825156.chain_983	2
scaffold_15	spliced_intron	14678979	14679166	+	asmbl_15699	none	STRG.18883.2,Trinity_GG_27659_c0_g1_i1,blat.proc3825172.chain_3495	3	STRG.18883.1,Trinity_GG_27659_c0_g1_i2,blat.proc3825172.chain_3494	3
scaffold_17	spliced_intron	7027645	7027894	-	asmbl_18022	none	blat.proc3825158.chain_1349	1	STRG.20365.1,Trinity_GG_11419_c0_g1_i2,blat.proc3825158.chain_1348	3
scaffold_7	alt_acceptor	15595252	15595253	+	asmbl_50448	none	STRG.9560.3	1	STRG.9560.2,Trinity_GG_22613_c0_g1_i1,blat.proc3825168.chain_2062	3
scaffold_27	alt_donor	2548622	2548623	+	asmbl_36092	none	STRG.28732.1	1	STRG.28732.3	1
scaffold_17	retained_intron	7850236	7850403	+	asmbl_18922	none	Trinity_GG_28451_c1_g1_i3,blat.proc3825174.chain_1176	2	STRG.20411.1,STRG.20411.2,STRG.20411.3	3
scaffold_8	retained_intron	11849733	11850089	+	asmbl_53277,asmbl_53279	none	STRG.10390.2,STRG.10390.4,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	4	blat.proc3825168.chain_3016	1
scaffold_15	retained_exon	13835383	13835403	-	asmbl_14678	none	STRG.18814.2,Trinity_GG_10553_c0_g1_i1,blat.proc3825156.chain_3639	3	STRG.18814.1,Trinity_GG_10553_c0_g1_i2,blat.proc3825156.chain_3638	3
scaffold_13	ends_in_intron	366659	366659	-	asmbl_9308	none	Trinity_GG_8663_c0_g1_i23,blat.proc3825156.chain_299	2	STRG.15442.1,STRG.15442.3,STRG.15442.4	3
scaffold_11	alt_acceptor	6608391	6608392	-	asmbl_6729	none	STRG.13704.2	1	STRG.13704.1,blat.proc3825154.chain_2262	2
scaffold_19	ends_in_intron	12108264	12108264	-	asmbl_22460	none	Trinity_GG_12482_c0_g1_i1,blat.proc3825158.chain_3189	2	STRG.22539.1,STRG.22539.4,STRG.22539.5,Trinity_GG_12482_c0_g1_i6,blat.proc3825158.chain_3190,blat.proc3825158.chain_3191,blat.proc3825158.chain_3192	7
scaffold_9	skipped_exon	5296039	5296615	+	asmbl_54022,asmbl_54023,asmbl_54025	none	STRG.11112.1,STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6	blat.proc3825168.chain_3571	1
scaffold_6	retained_intron	19076966	19077208	+	asmbl_47870	none	STRG.8575.3,Trinity_GG_21983_c2_g1_i1,blat.proc3825168.chain_954	3	STRG.8575.1,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i6,Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_948,blat.proc3825168.chain_951,blat.proc3825168.chain_952	7
scaffold_7	alt_donor	12053958	12053959	+	asmbl_50206,asmbl_50209	none	STRG.9309.2,Trinity_GG_22477_c0_g1_i4,blat.proc3825168.chain_1830	3	STRG.9309.1,blat.proc3825168.chain_1831	2
scaffold_20	alt_acceptor	8936118	8936119	-	asmbl_26014,asmbl_26015	none	STRG.23433.1,STRG.23433.2	2	STRG.23433.3	1
scaffold_13	spliced_intron	2652464	2652553	-	asmbl_9467,asmbl_9468,asmbl_9471,asmbl_9472	none	STRG.15580.1,Trinity_GG_8691_c0_g1_i1,blat.proc3825156.chain_377,blat.proc3825156.chain_378,blat.proc3825156.chain_379,blat.proc3825156.chain_380	6	blat.proc3825156.chain_376	1
scaffold_24	retained_intron	3655919	3656169	+	asmbl_32147	none	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3	STRG.26550.5,blat.proc3825176.chain_3466,blat.proc3825176.chain_3467	3
scaffold_14	retained_exon	6437202	6437324	-	asmbl_13131	none	STRG.17092.2,blat.proc3825156.chain_1909	2	STRG.17092.1,blat.proc3825156.chain_1908	2
scaffold_43	alt_acceptor	688	689	-	asmbl_43694	none	STRG.30047.5,Trinity_GG_16850_c3_g1_i1,Trinity_GG_16850_c3_g1_i2,blat.proc3825162.chain_3211,blat.proc3825162.chain_3212	5	STRG.30047.1,STRG.30047.2,STRG.30047.6,STRG.30047.7	4
scaffold_13	retained_intron	2339458	2339876	+	asmbl_10596,asmbl_10607	none	STRG.15564.8,STRG.15564.9	2	STRG.15564.10,STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5	5
scaffold_21	retained_exon	4904318	4904378	-	asmbl_27599	none	STRG.24034.1	1	STRG.24034.2	1
scaffold_24	alt_donor	10668157	10668158	+	asmbl_32585	none	STRG.27026.2,blat.proc3825178.chain_225	2	STRG.27026.1,blat.proc3825178.chain_226	2
scaffold_11	spliced_intron	5651474	5651835	+	asmbl_5572	none	STRG.13632.1,blat.proc3825170.chain_2167	2	blat.proc3825170.chain_2169	1
scaffold_26	starts_in_intron	4463000	4463000	+	asmbl_34910	none	Trinity_GG_32862_c0_g1_i1,blat.proc3825178.chain_1242	2	STRG.28152.1,blat.proc3825178.chain_1241,blat.proc3825178.chain_1243	3
scaffold_27	retained_exon	3024865	3024965	+	asmbl_36169	none	blat.proc3825178.chain_1868	1	STRG.28790.1,STRG.28790.2,blat.proc3825178.chain_1872	3
scaffold_17	starts_in_intron	8718068	8718068	+	asmbl_19015	none	STRG.20479.1	1	blat.proc3825174.chain_1278	1
scaffold_20	ends_in_intron	240587	240587	-	asmbl_25473	none	blat.proc3825158.chain_3590	1	STRG.22712.2,STRG.22712.3,STRG.22712.4	3
scaffold_16	spliced_intron	14663726	14663814	+	asmbl_16702	none	STRG.19866.2,Trinity_GG_28189_c1_g1_i2,blat.proc3825174.chain_752	3	STRG.19866.1,Trinity_GG_28189_c1_g1_i1,blat.proc3825174.chain_751	3
scaffold_15	retained_exon	5356434	5356448	-	asmbl_14203	none	STRG.18230.1	1	STRG.18230.2	1
scaffold_1	alternate_exon	9651993	9652115	-	asmbl_554	none	STRG.652.2,blat.proc3825148.chain_639	2	STRG.652.1,blat.proc3825148.chain_640	2
scaffold_6	starts_in_intron	13215816	13215816	+	asmbl_47494	none	Trinity_GG_21756_c1_g1_i1,blat.proc3825168.chain_589	2	STRG.8081.1,Trinity_GG_21756_c0_g1_i1,blat.proc3825168.chain_588	3
scaffold_7	alternate_exon	2742877	2742901	+	asmbl_49668	none	STRG.8704.3	1	STRG.8704.1,blat.proc3825168.chain_1145	2
scaffold_12	ends_in_intron	10575647	10575647	+	asmbl_7935	none	blat.proc3825170.chain_3593	1	STRG.15028.1,blat.proc3825170.chain_3594	2
scaffold_1	alt_donor	12956135	12956136	+	asmbl_2285	none	STRG.924.2	1	STRG.924.1,STRG.924.3,blat.proc3825164.chain_1090,blat.proc3825164.chain_1091	4
scaffold_19	spliced_intron	5155289	5155678	+	asmbl_21355,asmbl_21358	none	STRG.22084.1,STRG.22084.3,blat.proc3825174.chain_3027,blat.proc3825174.chain_3028	4	STRG.22084.2,blat.proc3825174.chain_3025	2
scaffold_7	alt_donor	18785081	18785082	+	asmbl_50533	none	STRG.9696.2	1	STRG.9696.1,STRG.9696.3,STRG.9696.4	3
scaffold_20	alternate_exon	11673843	11673914	-	asmbl_26173	none	STRG.23670.2,blat.proc3825160.chain_751	2	blat.proc3825160.chain_747	1
scaffold_11	spliced_intron	15656260	15657450	-	asmbl_7199,asmbl_7200,asmbl_7202,asmbl_7203,asmbl_7204,asmbl_7205	none	STRG.14308.1,STRG.14308.2,blat.proc3825154.chain_2859,blat.proc3825154.chain_2860,blat.proc3825154.chain_2861,blat.proc3825154.chain_2865,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867	8	Trinity_GG_8008_c0_g1_i6,blat.proc3825154.chain_2862,blat.proc3825154.chain_2863,blat.proc3825154.chain_2868	4
scaffold_3	alt_acceptor	9582317	9582318	-	asmbl_39055	none	STRG.3434.1,blat.proc3825148.chain_3307	2	STRG.3434.2	1
scaffold_12	alt_donor	6519560	6519561	+	asmbl_7693	none	STRG.14747.1	1	STRG.14747.2	1
scaffold_9	spliced_intron	14818996	14819580	-	asmbl_55494,asmbl_55504	none	STRG.11702.3,STRG.11702.7,Trinity_GG_6457_c0_g1_i2,blat.proc3825154.chain_158	4	STRG.11702.8,blat.proc3825154.chain_162	2
scaffold_10	alternate_exon	8903653	8903981	-	asmbl_4637	none	STRG.12634.3,blat.proc3825154.chain_1247,blat.proc3825178.chain_3390	3	STRG.12634.1,blat.proc3825154.chain_1246	2
scaffold_15	alt_acceptor	9047456	9047457	-	asmbl_14368	none	STRG.18450.2,blat.proc3825156.chain_3341	2	STRG.18450.1,blat.proc3825156.chain_3340	2
scaffold_28	alternate_exon	3541336	3541406	-	asmbl_38156,asmbl_38157	none	STRG.29570.1,STRG.29570.2,blat.proc3825162.chain_2720,blat.proc3825162.chain_2721	4	STRG.29570.3	1
scaffold_5	ends_in_intron	11803095	11803095	+	asmbl_45760	none	blat.proc3825166.chain_2655	1	STRG.6437.1	1
scaffold_15	spliced_intron	12000469	12000658	-	asmbl_14548,asmbl_14551	none	STRG.18639.1,STRG.18639.4,Trinity_GG_10485_c0_g1_i2,blat.proc3825156.chain_3534	4	Trinity_GG_10485_c0_g1_i4,blat.proc3825156.chain_3532,blat.proc3825156.chain_3533	3
scaffold_13	retained_intron	1238377	1238503	+	asmbl_10552	none	Trinity_GG_25867_c0_g1_i1,blat.proc3825172.chain_308	2	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_311,blat.proc3825172.chain_312	10
scaffold_5	skipped_exon	10196467	10198044	-	asmbl_44324	none	blat.proc3825150.chain_2531	1	STRG.6323.3	1
scaffold_12	retained_intron	14944862	14945190	-	asmbl_9018	none	Trinity_GG_8556_c0_g1_i1,blat.proc3825156.chain_86	2	STRG.15288.1,STRG.15288.2,Trinity_GG_8556_c0_g1_i4,Trinity_GG_8556_c0_g1_i5,blat.proc3825156.chain_84,blat.proc3825156.chain_85	6
scaffold_2	alt_donor	16292157	16292158	+	asmbl_25115	none	STRG.2564.2,blat.proc3825164.chain_2763	2	STRG.2564.1,blat.proc3825164.chain_2764	2
scaffold_24	retained_intron	445903	446548	+	asmbl_32021	none	STRG.26337.2	1	STRG.26337.1,Trinity_GG_31878_c0_g1_i2,blat.proc3825176.chain_3325,blat.proc3825176.chain_3326	4
scaffold_18	starts_in_intron	4762990	4762990	+	asmbl_20558,asmbl_20560	none	STRG.21274.1,Trinity_GG_29026_c1_g1_i3,blat.proc3825174.chain_2232	3	Trinity_GG_29026_c1_g1_i2,blat.proc3825174.chain_2229	2
scaffold_18	alt_donor	12935267	12935268	+	asmbl_20981,asmbl_20982	none	STRG.21740.1,STRG.21740.3	2	STRG.21740.2	1
scaffold_3	ends_in_intron	12942450	12942450	-	asmbl_39240	none	STRG.3672.3,Trinity_GG_2010_c0_g1_i1,blat.proc3825148.chain_3544	3	STRG.3672.1,STRG.3672.2,Trinity_GG_2010_c0_g1_i2,blat.proc3825148.chain_3545	4
scaffold_10	ends_in_intron	7284303	7284303	-	asmbl_4543	none	Trinity_GG_7012_c1_g1_i1,blat.proc3825154.chain_1131	2	STRG.12546.1,blat.proc3825154.chain_1129,blat.proc3825154.chain_1130	3
scaffold_16	alternate_exon	7533860	7533900	+	asmbl_16347	none	STRG.19412.3,blat.proc3825174.chain_294	2	STRG.19412.1,STRG.19412.2,blat.proc3825174.chain_293	3
scaffold_19	ends_in_intron	11799471	11799471	+	asmbl_21723	none	Trinity_GG_29765_c0_g1_i4,blat.proc3825174.chain_3531	2	STRG.22507.1,blat.proc3825174.chain_3529,blat.proc3825174.chain_3530	3
scaffold_1	alt_acceptor	11763225	11763226	+	asmbl_2147,asmbl_2148	none	STRG.802.2,STRG.802.3	2	STRG.802.1,blat.proc3825164.chain_982,blat.proc3825164.chain_983	3
scaffold_11	spliced_intron	15653309	15653408	-	asmbl_7197,asmbl_7198,asmbl_7200,asmbl_7203	none	STRG.14308.1,blat.proc3825154.chain_2859,blat.proc3825154.chain_2863,blat.proc3825154.chain_2866,blat.proc3825154.chain_2868	5	STRG.14308.2,blat.proc3825154.chain_2861,blat.proc3825154.chain_2867	3
scaffold_4	spliced_intron	4414847	4415344	+	asmbl_41248	none	Trinity_GG_19749_c0_g1_i4,blat.proc3825166.chain_845	2	blat.proc3825166.chain_847,blat.proc3825166.chain_854,blat.proc3825166.chain_855	3
scaffold_13	ends_in_intron	5705943	5705943	-	asmbl_9714,asmbl_9715	none	STRG.15881.3,blat.proc3825156.chain_732	2	STRG.15881.1,STRG.15881.2,blat.proc3825156.chain_726,blat.proc3825156.chain_733	4
scaffold_22	alternate_exon	11477814	11477923	+	asmbl_30396	none	Trinity_GG_31379_c0_g1_i2,blat.proc3825176.chain_2478	2	STRG.25495.1,STRG.25495.2,STRG.25495.3,Trinity_GG_31379_c0_g1_i1,Trinity_GG_31379_c0_g1_i3,Trinity_GG_31379_c0_g1_i4,blat.proc3825176.chain_2476,blat.proc3825176.chain_2477,blat.proc3825176.chain_2479	9
scaffold_8	starts_in_intron	4325800	4325800	+	asmbl_52835	none	blat.proc3825168.chain_2496	1	STRG.9914.1,blat.proc3825168.chain_2495	2
scaffold_19	retained_intron	5155289	5155500	+	asmbl_21356	none	STRG.22084.2,blat.proc3825174.chain_3025	2	STRG.22084.4,blat.proc3825174.chain_3026	2
scaffold_14	alt_donor	6679279	6679280	+	asmbl_12099	none	STRG.17109.1,blat.proc3825172.chain_1886	2	blat.proc3825172.chain_1887,blat.proc3825172.chain_1888	2
scaffold_1	alt_acceptor	6254722	6254723	-	asmbl_330,asmbl_332	none	STRG.421.1,STRG.421.2,Trinity_GG_222_c0_g1_i4	3	Trinity_GG_222_c0_g1_i1,blat.proc3825148.chain_383	2
scaffold_15	starts_in_intron	10649275	10649275	-	asmbl_14439,asmbl_14442	none	STRG.18558.3,blat.proc3825156.chain_3414,blat.proc3825156.chain_3418	3	STRG.18558.1,STRG.18558.2,blat.proc3825156.chain_3420	3
scaffold_5	alt_donor	11449564	11449565	+	asmbl_45741	none	STRG.6409.1,blat.proc3825166.chain_2531	2	STRG.6409.2	1
scaffold_2	alt_acceptor	483875	483876	-	asmbl_22802,asmbl_22803	none	STRG.1532.1,STRG.1532.3,blat.proc3825148.chain_1467	3	STRG.1532.2	1
scaffold_1	alt_donor	11098609	11098610	+	asmbl_2060	none	STRG.731.1,blat.proc3825164.chain_868	2	STRG.731.2	1
scaffold_4	retained_exon	7150796	7151997	+	asmbl_41465,asmbl_41466	none	blat.proc3825166.chain_1027,blat.proc3825166.chain_1028	2	STRG.4559.1	1
scaffold_19	alt_acceptor	8734058	8734059	-	asmbl_22307	none	STRG.22320.1,blat.proc3825158.chain_3031	2	STRG.22320.2	1
scaffold_14	retained_exon	4113488	4113544	-	asmbl_13036	none	STRG.16966.2,Trinity_GG_9474_c0_g1_i2,blat.proc3825156.chain_1735	3	STRG.16966.1,Trinity_GG_9474_c0_g1_i1,blat.proc3825156.chain_1736	3
scaffold_15	alt_acceptor	1988740	1988741	+	asmbl_15045	none	STRG.17988.1,blat.proc3825172.chain_2709	2	STRG.17988.2,blat.proc3825172.chain_2706	2
scaffold_13	spliced_intron	2637243	2637508	+	asmbl_10631	none	STRG.15562.1,Trinity_GG_25823_c0_g1_i1,blat.proc3825172.chain_213	3	STRG.15562.2,Trinity_GG_25823_c0_g1_i2,blat.proc3825172.chain_214	3
scaffold_7	alt_acceptor	6878337	6878338	+	asmbl_49874	none	STRG.8947.2	1	STRG.8947.1	1
scaffold_1	retained_intron	5739912	5740071	+	asmbl_1773,asmbl_1775	none	STRG.390.2,Trinity_GG_17568_c1_g1_i1,blat.proc3825164.chain_532	3	blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528,blat.proc3825164.chain_529,blat.proc3825164.chain_530	7
scaffold_10	retained_exon	5856956	5857031	-	asmbl_4398,asmbl_4400,asmbl_4401	none	STRG.12409.1,STRG.12409.2,STRG.12409.3,blat.proc3825154.chain_985	4	blat.proc3825154.chain_983	1
scaffold_8	alternate_exon	16504948	16506374	-	asmbl_52405,asmbl_52416	none	STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2934,blat.proc3825152.chain_2937	4	STRG.10629.2,blat.proc3825152.chain_2932	2
scaffold_18	spliced_intron	13150111	13150230	-	asmbl_20168	none	STRG.21756.1	1	STRG.21756.2	1
scaffold_9	retained_exon	14817775	14817893	-	asmbl_55499	none	STRG.11702.5	1	STRG.11702.1,blat.proc3825154.chain_160	2
scaffold_20	alternate_exon	5948290	5952670	-	asmbl_25804	none	STRG.23205.1,blat.proc3825160.chain_293	2	STRG.23205.2,blat.proc3825160.chain_289	2
scaffold_2	retained_intron	9790090	9790374	+	asmbl_24686	none	Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2364	2	STRG.2185.1,blat.proc3825164.chain_2361,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	4
scaffold_20	spliced_intron	631183	631334	-	asmbl_25503	none	STRG.22765.1,blat.proc3825158.chain_3610	2	blat.proc3825158.chain_3611	1
scaffold_5	retained_exon	4688419	4688616	-	asmbl_43992,asmbl_43994,asmbl_43995	none	blat.proc3825150.chain_2075,blat.proc3825150.chain_2083,blat.proc3825150.chain_2084	3	Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2077	2
scaffold_14	spliced_intron	5596465	5596629	+	asmbl_12029,asmbl_12031	none	STRG.17042.1,blat.proc3825172.chain_1829	2	STRG.17042.2,Trinity_GG_26703_c1_g1_i3,blat.proc3825172.chain_1826	3
scaffold_3	ends_in_intron	4631121	4631121	+	asmbl_40025	none	blat.proc3825164.chain_3463	1	STRG.3167.2	1
scaffold_9	retained_intron	11054396	11054475	+	asmbl_54332	none	STRG.11418.1,blat.proc3825170.chain_266	2	STRG.11418.2,blat.proc3825170.chain_265	2
scaffold_9	alt_acceptor	8395972	8395973	+	asmbl_54171	none	blat.proc3825170.chain_62	1	STRG.11261.1,STRG.11261.2,STRG.11261.3,STRG.11261.4,blat.proc3825170.chain_58,blat.proc3825170.chain_63	6
scaffold_2	spliced_intron	12727849	12728348	-	asmbl_23478	none	STRG.2328.1,blat.proc3825148.chain_2308	2	blat.proc3825148.chain_2309	1
scaffold_3	spliced_intron	15741539	15741648	-	asmbl_39440,asmbl_39442	none	STRG.3851.1,blat.proc3825148.chain_3706,blat.proc3825148.chain_3707	3	STRG.3851.2,STRG.3851.3,blat.proc3825148.chain_3704	3
scaffold_20	retained_intron	9825448	9825623	-	asmbl_26056	none	STRG.23529.2,blat.proc3825160.chain_616	2	STRG.23529.1,blat.proc3825160.chain_613,blat.proc3825160.chain_614,blat.proc3825160.chain_615	4
scaffold_1	starts_in_intron	3620826	3620826	+	asmbl_1614	none	STRG.229.3,blat.proc3825164.chain_356	2	STRG.229.1,blat.proc3825164.chain_354,blat.proc3825164.chain_355	3
scaffold_23	alt_acceptor	5620024	5620025	-	asmbl_30928	none	Trinity_GG_14487_c0_g1_i1,blat.proc3825160.chain_3056	2	STRG.25937.2,blat.proc3825160.chain_3059	2
scaffold_22	starts_in_intron	7945830	7945830	+	asmbl_30242	none	Trinity_GG_31246_c0_g2_i3,blat.proc3825176.chain_2293	2	STRG.25149.1,STRG.25149.2,blat.proc3825176.chain_2291,blat.proc3825176.chain_2292	4
scaffold_25	alt_acceptor	9307161	9307162	-	asmbl_34489	none	STRG.27741.1,blat.proc3825162.chain_1095	2	STRG.27741.2	1
scaffold_11	alt_acceptor	2203665	2203666	-	asmbl_6483,asmbl_6486	none	STRG.13383.1,STRG.13383.3	2	STRG.13383.2,STRG.13383.4	2
scaffold_14	retained_exon	7460506	7460602	-	asmbl_13206,asmbl_13207	none	STRG.17189.1,STRG.17189.3,blat.proc3825156.chain_1929	3	STRG.17189.4	1
scaffold_20	alt_acceptor	11503191	11503192	+	asmbl_27065	none	STRG.23655.1,Trinity_GG_30406_c0_g1_i2,blat.proc3825176.chain_851	3	STRG.23655.2	1
scaffold_9	alt_acceptor	17791899	17791900	-	asmbl_55680	none	STRG.11865.2,Trinity_GG_6570_c0_g2_i1,blat.proc3825154.chain_359	3	STRG.11865.1,Trinity_GG_6570_c0_g1_i2,Trinity_GG_6570_c0_g1_i3,blat.proc3825154.chain_356,blat.proc3825154.chain_358	5
scaffold_6	retained_intron	13064215	13064365	-	asmbl_48870,asmbl_48871,asmbl_48873	none	STRG.8063.2,STRG.8063.3,STRG.8063.4,blat.proc3825152.chain_455	4	STRG.8063.1	1
scaffold_13	alt_acceptor	5130014	5130015	+	asmbl_10825,asmbl_10826	none	STRG.15817.1,blat.proc3825172.chain_557,blat.proc3825172.chain_558	3	STRG.15817.2,STRG.15817.3,blat.proc3825172.chain_559	3
scaffold_2174	retained_intron	839	882	-	asmbl_29060	none	STRG.30718.1	1	STRG.30718.2	1
scaffold_2	starts_in_intron	17984175	17984175	+	asmbl_25215	none	STRG.2696.1	1	blat.proc3825164.chain_2959,blat.proc3825164.chain_2960	2
scaffold_11	alt_donor	8722270	8722271	+	asmbl_5831	none	STRG.13892.4,Trinity_GG_24977_c0_g1_i10,blat.proc3825170.chain_2458	3	STRG.13892.1,STRG.13892.2,STRG.13892.3,Trinity_GG_24977_c0_g1_i2,Trinity_GG_24977_c0_g1_i3,Trinity_GG_24977_c0_g1_i6,blat.proc3825170.chain_2457,blat.proc3825170.chain_2459	8
scaffold_1	spliced_intron	9254137	9254609	+	asmbl_1967	none	STRG.619.3,Trinity_GG_17679_c0_g1_i3,blat.proc3825164.chain_721	3	STRG.619.1,STRG.619.2,Trinity_GG_17679_c0_g1_i2,blat.proc3825164.chain_722	4
scaffold_14	alt_donor	2888061	2888062	-	asmbl_12982,asmbl_12983	none	STRG.16887.4,blat.proc3825156.chain_1633	2	STRG.16887.2,blat.proc3825156.chain_1635	2
scaffold_7	alternate_exon	8506662	8511682	+	asmbl_50000,asmbl_50001,asmbl_50004	none	STRG.9078.1,STRG.9078.2,STRG.9078.3,blat.proc3825168.chain_1604,blat.proc3825168.chain_1607	5	STRG.9078.4	1
scaffold_22	ends_in_intron	8286713	8286713	-	asmbl_29474	none	Trinity_GG_14082_c2_g1_i1,blat.proc3825160.chain_2346	2	STRG.25186.1	1
scaffold_14	alt_acceptor	3157078	3157079	+	asmbl_11910,asmbl_11912	none	STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i12,blat.proc3825172.chain_1601	4	STRG.16908.1,Trinity_GG_26576_c0_g1_i11,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1605,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1609,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	17
scaffold_15	alternate_exon	8440534	8440572	+	asmbl_15331	none	STRG.18398.1,blat.proc3825172.chain_2997	2	STRG.18398.2	1
scaffold_5	alt_acceptor	13112654	13112655	-	asmbl_44518,asmbl_44519	none	STRG.6549.1,STRG.6549.2,blat.proc3825150.chain_2736	3	blat.proc3825150.chain_2735	1
scaffold_1	alternate_exon	5136272	5137142	+	asmbl_1700	none	blat.proc3825164.chain_412	1	STRG.321.1	1
scaffold_20	skipped_exon	6132921	6134448	-	asmbl_25817	none	STRG.23214.2,blat.proc3825160.chain_248	2	STRG.23214.1,blat.proc3825160.chain_247	2
scaffold_4	alternate_exon	17116847	17116928	+	asmbl_42037	none	Trinity_GG_20255_c0_g1_i1,blat.proc3825166.chain_1665	2	STRG.5308.4	1
scaffold_9	retained_intron	12073542	12074636	-	asmbl_55352	none	STRG.11530.1,Trinity_GG_6349_c0_g1_i9,blat.proc3825152.chain_3738	3	STRG.11530.3,Trinity_GG_6349_c0_g1_i1,blat.proc3825152.chain_3733	3
scaffold_5	alt_acceptor	3102953	3102954	+	asmbl_45211	none	STRG.5807.2,blat.proc3825166.chain_2051	2	STRG.5807.1,blat.proc3825166.chain_2050	2
scaffold_17	alt_acceptor	6611707	6611708	+	asmbl_18862	none	STRG.20316.2	1	STRG.20316.1,blat.proc3825174.chain_1154	2
scaffold_14	alternate_exon	14147913	14148583	+	asmbl_12526	none	STRG.17687.4	1	STRG.17687.3	1
scaffold_3	alternate_exon	8168189	8168682	-	asmbl_39011	none	Trinity_GG_1828_c12_g1_i1,Trinity_GG_1828_c3_g1_i4,blat.proc3825148.chain_3275,blat.proc3825148.chain_3286	4	STRG.3440.1,blat.proc3825148.chain_3270	2
scaffold_2	alternate_exon	12722147	12722666	+	asmbl_24805	none	STRG.2320.3	1	STRG.2320.5	1
scaffold_24	alt_acceptor	9952412	9952413	-	asmbl_33154,asmbl_33156,asmbl_33158,asmbl_33160	none	STRG.26968.1,STRG.26968.2,Trinity_GG_15063_c0_g1_i3,blat.proc3825162.chain_273,blat.proc3825162.chain_274	5	STRG.26968.6,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_275	4
scaffold_4	skipped_exon	13076162	13076428	+	asmbl_41778,asmbl_41780	none	STRG.4947.4,blat.proc3825166.chain_1382	2	STRG.4947.1,STRG.4947.2,STRG.4947.3,blat.proc3825166.chain_1379,blat.proc3825166.chain_1381	5
scaffold_7	ends_in_intron	4931257	4931257	+	asmbl_49770	none	blat.proc3825168.chain_1353	1	STRG.8852.1,STRG.8852.2,STRG.8852.3,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1347,blat.proc3825168.chain_1348,blat.proc3825168.chain_1352	9
scaffold_13	retained_intron	4078795	4078887	+	asmbl_10760	none	blat.proc3825172.chain_477	1	STRG.15733.1,blat.proc3825172.chain_478	2
scaffold_14	spliced_intron	2899140	2899275	+	asmbl_11893	none	STRG.16891.1,Trinity_GG_26600_c0_g1_i1,blat.proc3825172.chain_1665	3	Trinity_GG_26600_c0_g1_i3,blat.proc3825172.chain_1666	2
scaffold_4	alt_donor	4124653	4124654	-	asmbl_42502	none	STRG.4324.1,blat.proc3825150.chain_565	2	STRG.4324.2,blat.proc3825150.chain_564	2
scaffold_2	retained_intron	15686309	15686390	+	asmbl_25069	none	Trinity_GG_18746_c0_g1_i1,blat.proc3825164.chain_2817	2	STRG.2522.2,STRG.2522.3,Trinity_GG_18746_c0_g1_i4,Trinity_GG_18746_c0_g1_i5,blat.proc3825164.chain_2816	5
scaffold_23	retained_intron	2038659	2038870	+	asmbl_31375	none	blat.proc3825176.chain_2603	1	STRG.25686.1,blat.proc3825176.chain_2601,blat.proc3825176.chain_2602	3
scaffold_14	ends_in_intron	2377518	2377518	-	asmbl_12942	none	STRG.16854.8,Trinity_GG_9462_c1_g1_i1	2	STRG.16854.2,STRG.16854.4	2
scaffold_13	retained_intron	13973739	13973853	+	asmbl_11418	none	Trinity_GG_26313_c0_g1_i6	1	blat.proc3825172.chain_1172,blat.proc3825172.chain_1173	2
scaffold_15	alt_acceptor	15410184	15410185	+	asmbl_15766,asmbl_15768,asmbl_15774	none	STRG.18930.3,STRG.18930.5,STRG.18930.9,blat.proc3825172.chain_3586,blat.proc3825172.chain_3587	5	STRG.18930.1,STRG.18930.10,STRG.18930.2,STRG.18930.6,STRG.18930.7,blat.proc3825172.chain_3588,blat.proc3825172.chain_3589,blat.proc3825172.chain_3590	8
scaffold_22	spliced_intron	5923485	5923610	+	asmbl_30068,asmbl_30070	none	STRG.24938.1,STRG.24938.2,blat.proc3825176.chain_2045	3	Trinity_GG_31103_c0_g1_i2,blat.proc3825176.chain_2046	2
scaffold_1	retained_intron	9329051	9329388	+	asmbl_1984	none	STRG.634.3	1	STRG.634.1,STRG.634.2	2
scaffold_1	alt_donor	16487426	16487427	-	asmbl_991	none	STRG.1159.2,blat.proc3825148.chain_1096	2	STRG.1159.1,blat.proc3825148.chain_1101,blat.proc3825148.chain_1102	3
scaffold_7	retained_exon	10300971	10301039	+	asmbl_50109	none	STRG.9210.2,blat.proc3825168.chain_1703	2	STRG.9210.1,blat.proc3825168.chain_1704	2
scaffold_13	starts_in_intron	2995465	2995465	+	asmbl_10646	none	Trinity_GG_25895_c0_g1_i3,blat.proc3825172.chain_368	2	STRG.15606.1,STRG.15606.2,STRG.15606.3,blat.proc3825172.chain_367	4
scaffold_6	ends_in_intron	13983093	13983093	-	asmbl_48968	none	Trinity_GG_4653_c0_g2_i6	1	STRG.8159.1,blat.proc3825152.chain_612,blat.proc3825152.chain_614,blat.proc3825152.chain_615	4
scaffold_16	starts_in_intron	1780227	1780227	+	asmbl_16089	none	STRG.19102.4,blat.proc3825174.chain_18,blat.proc3825174.chain_19	3	STRG.19102.1,STRG.19102.3,blat.proc3825174.chain_21,blat.proc3825174.chain_22	4
scaffold_10	alt_acceptor	10503095	10503096	-	asmbl_4742	none	STRG.12737.1,blat.proc3825154.chain_1355	2	STRG.12737.2	1
scaffold_1	retained_intron	12683507	12683637	+	asmbl_2247	none	blat.proc3825164.chain_1037	1	STRG.892.1,blat.proc3825164.chain_1038,blat.proc3825164.chain_1039,blat.proc3825164.chain_1040	4
scaffold_6	alt_donor	7285973	7285974	-	asmbl_48490	none	STRG.7634.1,blat.proc3825152.chain_36	2	STRG.7634.2	1
scaffold_18	ends_in_intron	78216	78216	+	asmbl_20253	none	Trinity_GG_28832_c0_g1_i1,blat.proc3825174.chain_1868	2	STRG.20962.1	1
scaffold_12	alt_donor	7626857	7626858	-	asmbl_8611	none	blat.proc3825154.chain_3291	1	STRG.14843.2	1
scaffold_13	alt_acceptor	11946156	11946157	-	asmbl_10111	none	STRG.16330.2,Trinity_GG_9149_c0_g1_i1,blat.proc3825156.chain_1198,blat.proc3825156.chain_1199	4	STRG.16330.1,Trinity_GG_9149_c0_g1_i3,blat.proc3825156.chain_1197	3
scaffold_13	retained_intron	16436550	16436943	+	asmbl_11581,asmbl_11582	none	STRG.16696.2,blat.proc3825172.chain_1427	2	STRG.16696.1,Trinity_GG_26477_c0_g1_i2,Trinity_GG_26477_c0_g1_i5,blat.proc3825172.chain_1425,blat.proc3825172.chain_1426	5
scaffold_11	alt_donor	15668765	15668766	-	asmbl_7208	none	STRG.14305.1,blat.proc3825154.chain_2853	2	STRG.14305.2,blat.proc3825154.chain_2854	2
scaffold_2	ends_in_intron	15269223	15269223	+	asmbl_25008	none	blat.proc3825164.chain_2610	1	STRG.2486.1,blat.proc3825164.chain_2612,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2618,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	7
scaffold_23	spliced_intron	10978092	10978827	+	asmbl_31898,asmbl_31903,asmbl_31904,asmbl_31906	none	STRG.26307.1,STRG.26307.2,STRG.26307.4,blat.proc3825176.chain_3182,blat.proc3825176.chain_3184	5	Trinity_GG_31796_c0_g1_i6,blat.proc3825176.chain_3177,blat.proc3825176.chain_3178,blat.proc3825176.chain_3179,blat.proc3825176.chain_3181,blat.proc3825176.chain_3183	6
scaffold_15	retained_intron	12433731	12434069	+	asmbl_15567,asmbl_15568,asmbl_15569,asmbl_15571,asmbl_15572	none	blat.proc3825172.chain_3337,blat.proc3825172.chain_3338,blat.proc3825172.chain_3339,blat.proc3825172.chain_3340,blat.proc3825172.chain_3341,blat.proc3825172.chain_3343,blat.proc3825172.chain_3344	7	STRG.18701.1,Trinity_GG_27574_c0_g1_i7,blat.proc3825172.chain_3342	3
scaffold_3	retained_intron	6200887	6200973	-	asmbl_38919,asmbl_38920	none	STRG.3263.2,STRG.3263.3,Trinity_GG_1767_c0_g1_i1,blat.proc3825148.chain_3109	4	STRG.3263.1	1
scaffold_8	skipped_exon	12326039	12326530	-	asmbl_52194,asmbl_52196	none	STRG.10413.3,blat.proc3825152.chain_2633	2	STRG.10413.1,blat.proc3825152.chain_2631,blat.proc3825152.chain_2636	3
scaffold_6	retained_exon	17847751	17847759	+	asmbl_47792	none	blat.proc3825168.chain_931	1	STRG.8474.1	1
scaffold_18	alt_acceptor	10132499	10132500	+	asmbl_20903	none	STRG.21606.1	1	STRG.21606.2,blat.proc3825174.chain_2643,blat.proc3825174.chain_2644	3
scaffold_23	spliced_intron	245837	246226	-	asmbl_30570	none	STRG.25548.2,blat.proc3825160.chain_2706	2	Trinity_GG_14293_c0_g1_i2,blat.proc3825160.chain_2707	2
scaffold_15	skipped_exon	12123673	12125251	+	asmbl_15541	none	STRG.18687.2	1	STRG.18687.1,blat.proc3825172.chain_3308	2
scaffold_18	ends_in_intron	12935608	12935608	+	asmbl_20980,asmbl_20982	none	STRG.21740.2,STRG.21740.3	2	STRG.21740.1	1
scaffold_18	spliced_intron	7686792	7686884	+	asmbl_20783,asmbl_20785	none	STRG.21474.2,blat.proc3825174.chain_2519	2	STRG.21474.3,STRG.21474.5,Trinity_GG_29179_c0_g1_i14,blat.proc3825174.chain_2511,blat.proc3825174.chain_2512,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518	7
scaffold_8	alt_donor	12917596	12917597	-	asmbl_52245,asmbl_52246,asmbl_52247,asmbl_52251	none	STRG.10480.2,STRG.10480.3,STRG.10480.5,STRG.10480.6,blat.proc3825152.chain_2736,blat.proc3825152.chain_2738	6	STRG.10480.4,STRG.10480.7,blat.proc3825152.chain_2737	3
scaffold_13	spliced_intron	8237956	8238073	-	asmbl_9958,asmbl_9959	none	STRG.16116.1,blat.proc3825156.chain_1035,blat.proc3825156.chain_1038	3	blat.proc3825156.chain_1037	1
scaffold_10	skipped_exon	16822304	16824535	+	asmbl_3726	none	STRG.13127.1	1	STRG.13127.2	1
scaffold_22	alt_donor	7968417	7968418	+	asmbl_30245	none	STRG.25150.1,blat.proc3825176.chain_2271	2	STRG.25150.2	1
scaffold_13	alt_donor	9952981	9952982	+	asmbl_11216	none	STRG.16236.2	1	STRG.16236.1,blat.proc3825172.chain_1005	2
scaffold_8	starts_in_intron	12027248	12027248	+	asmbl_53303	none	blat.proc3825168.chain_2996	1	STRG.10402.1,Trinity_GG_23119_c0_g1_i2,blat.proc3825168.chain_2995	3
scaffold_11	starts_in_intron	13649772	13649772	-	asmbl_7153	none	blat.proc3825154.chain_2705	1	STRG.14222.1,STRG.14222.2,blat.proc3825154.chain_2706,blat.proc3825154.chain_2707	4
scaffold_8	ends_in_intron	9109843	9109843	+	asmbl_53051	none	blat.proc3825168.chain_2707	1	STRG.10166.1,Trinity_GG_22950_c0_g1_i1,blat.proc3825168.chain_2709	3
scaffold_21	starts_in_intron	2526500	2526500	-	asmbl_27475	none	STRG.23884.2	1	STRG.23884.1,blat.proc3825160.chain_1033,blat.proc3825160.chain_1034	3
scaffold_2	retained_intron	13063387	13063523	+	asmbl_24812,asmbl_24814	none	blat.proc3825164.chain_2494,blat.proc3825164.chain_2496,blat.proc3825164.chain_2498	3	STRG.2332.1,STRG.2332.2,blat.proc3825164.chain_2495,blat.proc3825164.chain_2497,blat.proc3825164.chain_2500,blat.proc3825164.chain_2502	6
scaffold_6	alt_acceptor	10531377	10531378	+	asmbl_47286	none	blat.proc3825168.chain_336	1	STRG.7889.1	1
scaffold_15	alt_donor	9858082	9858083	-	asmbl_14415	none	STRG.18501.3	1	STRG.18501.1,STRG.18501.2,Trinity_GG_10363_c0_g1_i1,blat.proc3825156.chain_3301	4
scaffold_1	ends_in_intron	5719957	5719957	+	asmbl_1760	none	blat.proc3825164.chain_451	1	STRG.371.1	1
scaffold_25	retained_intron	6525867	6525968	-	asmbl_34365	none	STRG.27535.1	1	blat.proc3825162.chain_926	1
scaffold_14	alternate_exon	319587	319649	-	asmbl_12819	none	STRG.16723.1	1	blat.proc3825156.chain_1532	1
scaffold_19	retained_exon	5461706	5461769	+	asmbl_21377	none	blat.proc3825174.chain_3157	1	STRG.22117.1,blat.proc3825174.chain_3160	2
scaffold_8	ends_in_intron	11780895	11780895	-	asmbl_52169	none	blat.proc3825152.chain_2616	1	STRG.10384.1,blat.proc3825152.chain_2617	2
scaffold_17	alt_acceptor	2534352	2534353	-	asmbl_17756,asmbl_17757	none	STRG.20049.1,STRG.20049.2,blat.proc3825158.chain_1072,blat.proc3825158.chain_1073	4	blat.proc3825158.chain_1074	1
scaffold_1	retained_intron	11657286	11657388	+	asmbl_2121	none	blat.proc3825164.chain_900	1	STRG.776.1,Trinity_GG_17783_c0_g1_i3,blat.proc3825164.chain_898,blat.proc3825164.chain_899	4
scaffold_15	alt_donor	2798144	2798145	+	asmbl_15079	none	STRG.18067.1,blat.proc3825172.chain_2743	2	blat.proc3825172.chain_2742	1
scaffold_24	retained_intron	3655857	3656169	+	asmbl_32147	none	STRG.26550.4,Trinity_GG_31970_c0_g1_i12,blat.proc3825176.chain_3464	3	STRG.26550.2,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463	3
scaffold_9	spliced_intron	6240560	6240600	-	asmbl_55048	none	STRG.11163.1,blat.proc3825152.chain_3337	2	Trinity_GG_6156_c0_g1_i2,blat.proc3825152.chain_3336	2
scaffold_27	alt_donor	5653931	5653932	+	asmbl_36350,asmbl_36351	none	STRG.28973.1,STRG.28973.2,blat.proc3825178.chain_2094,blat.proc3825178.chain_2095	4	STRG.28973.3	1
scaffold_17	alt_acceptor	2566632	2566633	+	asmbl_18662	none	STRG.20057.1,blat.proc3825174.chain_935	2	STRG.20057.2,STRG.20057.3,blat.proc3825174.chain_934	3
scaffold_2	alt_donor	20313402	20313403	+	asmbl_25323	none	STRG.2877.3,blat.proc3825164.chain_3116	2	STRG.2877.4	1
scaffold_20	retained_intron	8167955	8168079	+	asmbl_26749	none	blat.proc3825176.chain_501	1	STRG.23366.2	1
scaffold_15	alternate_exon	7434449	7434946	-	asmbl_14299	none	STRG.18342.1,blat.proc3825156.chain_3187	2	STRG.18342.2,STRG.18342.3,Trinity_GG_10314_c1_g1_i2,blat.proc3825156.chain_3188,blat.proc3825156.chain_3190,blat.proc3825156.chain_3191	6
scaffold_26	alternate_exon	5561971	5562154	+	asmbl_35020	none	STRG.28266.4	1	STRG.28266.1	1
scaffold_4	spliced_intron	9965598	9965735	-	asmbl_42832	none	blat.proc3825150.chain_971	1	STRG.4759.2,blat.proc3825150.chain_972	2
scaffold_2	alt_donor	14369241	14369242	+	asmbl_24924	none	STRG.2437.1,blat.proc3825164.chain_2687	2	STRG.2437.2,blat.proc3825164.chain_2688	2
scaffold_28	alternate_exon	8410001	8410030	+	asmbl_37741	none	STRG.29916.1	1	STRG.29916.2	1
scaffold_24	spliced_intron	9116511	9116764	+	asmbl_32506,asmbl_32507,asmbl_32508,asmbl_32509,asmbl_32511,asmbl_32512	none	STRG.26942.1,blat.proc3825178.chain_172,blat.proc3825178.chain_175,blat.proc3825178.chain_177,blat.proc3825178.chain_178	5	blat.proc3825178.chain_179,blat.proc3825178.chain_180	2
scaffold_3	starts_in_intron	16941229	16941229	-	asmbl_39522	none	blat.proc3825150.chain_59	1	STRG.3938.1,blat.proc3825150.chain_60	2
scaffold_13	alternate_exon	8356249	8356834	+	asmbl_11131	none	STRG.16130.4	1	STRG.16130.1,STRG.16130.2,STRG.16130.3,Trinity_GG_26184_c0_g1_i5,blat.proc3825172.chain_915,blat.proc3825172.chain_917,blat.proc3825172.chain_918,blat.proc3825172.chain_919	8
scaffold_2	alternate_exon	14128042	14132762	-	asmbl_23558,asmbl_23559,asmbl_23560	none	STRG.2408.1,blat.proc3825148.chain_2401,blat.proc3825148.chain_2402,blat.proc3825148.chain_2403	4	STRG.2408.3	1
scaffold_1	alt_donor	13433616	13433617	-	asmbl_804	none	blat.proc3825148.chain_924	1	STRG.960.1,blat.proc3825148.chain_926	2
scaffold_6	retained_intron	9012696	9012818	+	asmbl_47192	none	STRG.7780.2,blat.proc3825168.chain_237	2	STRG.7780.1,blat.proc3825168.chain_238	2
scaffold_22	retained_intron	237472	237591	+	asmbl_29826	none	blat.proc3825176.chain_1792	1	STRG.24681.1,blat.proc3825176.chain_1793	2
scaffold_20	retained_intron	10249203	10249538	-	asmbl_26098	none	blat.proc3825160.chain_662	1	STRG.23572.2,blat.proc3825160.chain_664	2
scaffold_18	retained_exon	11913976	11914077	+	asmbl_20956	none	STRG.21695.1	1	STRG.21695.2,blat.proc3825174.chain_2722	2
scaffold_24	ends_in_intron	10167329	10167329	+	asmbl_32547	none	blat.proc3825178.chain_80	1	STRG.26979.1,STRG.26979.2,blat.proc3825178.chain_79	3
scaffold_10	spliced_intron	12726885	12726904	+	asmbl_3539	none	STRG.12856.2	1	STRG.12856.1	1
scaffold_6	ends_in_intron	9170256	9170256	+	asmbl_47227	none	Trinity_GG_21600_c0_g1_i3,blat.proc3825168.chain_264	2	STRG.7793.1,Trinity_GG_21600_c0_g1_i1,Trinity_GG_21600_c0_g1_i2,blat.proc3825168.chain_265,blat.proc3825168.chain_266	5
scaffold_2	spliced_intron	14363482	14363566	-	asmbl_23598	none	STRG.2439.1,blat.proc3825148.chain_2427	2	blat.proc3825148.chain_2426	1
scaffold_14	retained_intron	11386935	11387002	-	asmbl_13480	none	blat.proc3825156.chain_2294	1	STRG.17477.3,blat.proc3825156.chain_2295	2
scaffold_25	alternate_exon	7939740	7939829	+	asmbl_33701	none	STRG.27623.2	1	STRG.27623.1,Trinity_GG_32523_c0_g1_i1,blat.proc3825178.chain_688	3
scaffold_4	starts_in_intron	653726	653726	-	asmbl_42336	none	Trinity_GG_2303_c0_g1_i1,blat.proc3825150.chain_368	2	STRG.4137.1,Trinity_GG_2303_c0_g1_i2,blat.proc3825150.chain_367	3
scaffold_1	retained_intron	3679992	3680248	+	asmbl_1628	none	blat.proc3825164.chain_369	1	STRG.242.1,blat.proc3825164.chain_366,blat.proc3825164.chain_368	3
scaffold_4	alternate_exon	7307090	7307132	+	asmbl_41488	none	Trinity_GG_19854_c1_g1_i2,blat.proc3825166.chain_1032	2	STRG.4560.1,blat.proc3825166.chain_1031	2
scaffold_2	starts_in_intron	9197575	9197575	+	asmbl_24676	none	STRG.2172.2	1	STRG.2172.1,Trinity_GG_18505_c0_g1_i1,blat.proc3825164.chain_2299	3
scaffold_5	alt_donor	939501	939502	-	asmbl_43794	none	STRG.5640.2	1	STRG.5640.3	1
scaffold_15	alternate_exon	11399940	11402679	-	asmbl_14493,asmbl_14494,asmbl_14495,asmbl_14496	none	STRG.18606.1,STRG.18606.2,STRG.18606.3,STRG.18606.5,blat.proc3825156.chain_3363,blat.proc3825156.chain_3365,blat.proc3825156.chain_3366	7	STRG.18606.4,STRG.18606.6	2
scaffold_18	alt_donor	12935336	12935337	+	asmbl_20980	none	STRG.21740.2	1	STRG.21740.1,STRG.21740.3	2
scaffold_7	alternate_exon	13867545	13867874	-	asmbl_51318	none	STRG.9480.1,Trinity_GG_5315_c2_g1_i1,blat.proc3825152.chain_1822,blat.proc3825152.chain_1826	4	STRG.9480.4,STRG.9480.5	2
scaffold_13	spliced_intron	2270956	2271084	-	asmbl_9437,asmbl_9439,asmbl_9440,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_397,blat.proc3825156.chain_398,blat.proc3825156.chain_399	11	STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_400	9
scaffold_6	ends_in_intron	16888182	16888182	-	asmbl_49178	none	Trinity_GG_4777_c0_g1_i5,blat.proc3825152.chain_818	2	STRG.8411.1,STRG.8411.2,STRG.8411.3,Trinity_GG_4777_c0_g1_i2,Trinity_GG_4777_c0_g1_i3,Trinity_GG_4777_c0_g1_i4,blat.proc3825152.chain_819,blat.proc3825152.chain_820,blat.proc3825152.chain_822	9
scaffold_7	retained_intron	11144044	11145072	+	asmbl_50150,asmbl_50153,asmbl_50155	none	STRG.9262.2,blat.proc3825168.chain_1784,blat.proc3825168.chain_1785	3	STRG.9262.1,blat.proc3825168.chain_1787,blat.proc3825168.chain_1788,blat.proc3825168.chain_1789,blat.proc3825168.chain_1791	5
scaffold_14	starts_in_intron	9607117	9607117	+	asmbl_12294	none	Trinity_GG_26870_c1_g1_i2	1	STRG.17351.1,STRG.17351.2,blat.proc3825172.chain_2133	3
scaffold_23	alternate_exon	9467676	9470953	-	asmbl_31097	none	STRG.26170.1,blat.proc3825160.chain_3333	2	blat.proc3825160.chain_3332	1
scaffold_3	alternate_exon	12062509	12062660	+	asmbl_40394	none	STRG.3630.2	1	STRG.3630.1,Trinity_GG_19350_c0_g1_i1,blat.proc3825166.chain_128	3
scaffold_11	retained_intron	4639501	4639586	+	asmbl_5492	none	blat.proc3825170.chain_2087	1	STRG.13546.1,blat.proc3825170.chain_2088	2
scaffold_5	retained_intron	18514607	18514706	-	asmbl_44843	none	STRG.6982.1,blat.proc3825150.chain_3062	2	STRG.6982.2,blat.proc3825150.chain_3063	2
scaffold_14	retained_intron	11676499	11676859	-	asmbl_13519	none	STRG.17513.3,blat.proc3825156.chain_2348	2	STRG.17513.2,blat.proc3825156.chain_2347	2
scaffold_4	alt_acceptor	4498794	4498795	-	asmbl_42519	none	STRG.4352.1,Trinity_GG_2437_c0_g1_i2,blat.proc3825150.chain_588	3	STRG.4352.2	1
scaffold_11	alternate_exon	3767817	3768042	-	asmbl_6577	none	STRG.13508.2	1	STRG.13508.1,STRG.13508.3,STRG.13508.4,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	5
scaffold_9	spliced_intron	12305541	12305790	+	asmbl_54430	none	STRG.11553.1,blat.proc3825170.chain_375	2	STRG.11553.2,blat.proc3825170.chain_376,blat.proc3825170.chain_377	3
scaffold_13	starts_in_intron	364635	364635	-	asmbl_9306	none	STRG.15442.5,Trinity_GG_8663_c0_g1_i8,blat.proc3825156.chain_294	3	STRG.15442.1,STRG.15442.2,STRG.15442.3,STRG.15442.4,Trinity_GG_8663_c0_g1_i17,Trinity_GG_8663_c0_g1_i19,Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g1_i6,blat.proc3825156.chain_290,blat.proc3825156.chain_295,blat.proc3825156.chain_296,blat.proc3825156.chain_298	12
scaffold_1	skipped_exon	12746690	12748390	-	asmbl_751,asmbl_753	none	STRG.895.1,STRG.895.5,blat.proc3825148.chain_850	3	Trinity_GG_447_c0_g1_i3,blat.proc3825148.chain_852	2
scaffold_2	spliced_intron	16342563	16343039	-	asmbl_23683,asmbl_23685	none	STRG.2577.1,Trinity_GG_1431_c0_g2_i1,blat.proc3825148.chain_2567	3	blat.proc3825148.chain_2565	1
scaffold_27	retained_intron	3090524	3090653	-	asmbl_36888,asmbl_36892	none	STRG.28796.4,Trinity_GG_16154_c0_g1_i4,blat.proc3825162.chain_2067	3	STRG.28796.1,STRG.28796.2,STRG.28796.3,STRG.28796.5,STRG.28796.6,blat.proc3825162.chain_2064,blat.proc3825162.chain_2065,blat.proc3825162.chain_2068,blat.proc3825162.chain_2069	9
scaffold_14	spliced_intron	2374225	2374349	-	asmbl_12934,asmbl_12935,asmbl_12937,asmbl_12939,asmbl_12941	none	STRG.16854.2,STRG.16854.3,STRG.16854.4,STRG.16854.6,STRG.16854.7	5	STRG.16854.1,STRG.16854.5,Trinity_GG_9462_c0_g1_i7	3
scaffold_2	alt_acceptor	928970	928971	+	asmbl_24153,asmbl_24155	none	STRG.1570.1,STRG.1570.3,blat.proc3825164.chain_1630,blat.proc3825164.chain_1632	4	STRG.1570.6,STRG.1570.9,blat.proc3825164.chain_1625,blat.proc3825164.chain_1631	4
scaffold_21	alternate_exon	3155826	3156165	+	asmbl_28464,asmbl_28466,asmbl_28467,asmbl_28468,asmbl_28469,asmbl_28470,asmbl_28471,asmbl_28472	none	STRG.23959.2,STRG.23959.3,STRG.23959.4,STRG.23959.5,blat.proc3825176.chain_1133,blat.proc3825176.chain_1135,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	8	STRG.23959.6	1
scaffold_11	retained_intron	17376092	17376187	+	asmbl_6222	none	Trinity_GG_25216_c0_g1_i4,blat.proc3825170.chain_2880	2	STRG.14402.1,STRG.14402.2,blat.proc3825170.chain_2881,blat.proc3825170.chain_2882,blat.proc3825170.chain_2884	5
scaffold_22	alt_donor	11477602	11477603	+	asmbl_30393	none	STRG.25495.2,Trinity_GG_31379_c0_g1_i3,blat.proc3825176.chain_2479	3	STRG.25495.1,Trinity_GG_31379_c0_g1_i1,blat.proc3825176.chain_2477	3
scaffold_19	ends_in_intron	11482678	11482678	-	asmbl_22410	none	blat.proc3825158.chain_3245	1	STRG.22486.1,STRG.22486.2,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3250	5
scaffold_2	starts_in_intron	2871845	2871845	-	asmbl_22942	none	blat.proc3825148.chain_1662	1	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1661,blat.proc3825148.chain_1663,blat.proc3825148.chain_1664	5
scaffold_17	ends_in_intron	3190302	3190302	+	asmbl_18706	none	Trinity_GG_28314_c0_g1_i1,blat.proc3825174.chain_964	2	STRG.20100.1	1
scaffold_15	alternate_exon	15158446	15158596	+	asmbl_15719,asmbl_15720	none	blat.proc3825172.chain_3439,blat.proc3825172.chain_3440	2	STRG.18906.5	1
scaffold_2	alternate_exon	18308131	18308459	-	asmbl_23774	none	STRG.2714.1,blat.proc3825148.chain_2640	2	STRG.2714.2,STRG.2714.3,blat.proc3825148.chain_2641	3
scaffold_15	alternate_exon	12391554	12394406	-	asmbl_14575	none	STRG.18695.2	1	STRG.18695.1,blat.proc3825156.chain_3520	2
scaffold_6	alt_acceptor	17798851	17798852	-	asmbl_49198	none	STRG.8463.1,blat.proc3825152.chain_850	2	STRG.8463.2,STRG.8463.3,blat.proc3825152.chain_851	3
scaffold_18	ends_in_intron	7199506	7199506	+	asmbl_20718	none	Trinity_GG_29093_c0_g1_i1,blat.proc3825174.chain_2363	2	STRG.21425.1,STRG.21425.3,Trinity_GG_29093_c0_g1_i2,blat.proc3825174.chain_2364	4
scaffold_4	retained_intron	6188631	6188800	-	asmbl_42663,asmbl_42664	none	STRG.4491.2,blat.proc3825150.chain_679	2	STRG.4491.3,Trinity_GG_2477_c0_g1_i3,blat.proc3825150.chain_678	3
scaffold_10	retained_exon	5390518	5390544	+	asmbl_3166	none	STRG.12365.2,blat.proc3825170.chain_1032	2	STRG.12365.1,blat.proc3825170.chain_1033	2
scaffold_5	retained_exon	12658313	12658374	+	asmbl_45807,asmbl_45811,asmbl_45813	none	STRG.6505.2,blat.proc3825166.chain_2636,blat.proc3825166.chain_2637,blat.proc3825166.chain_2639	4	STRG.6505.1	1
scaffold_17	retained_intron	5137331	5138143	-	asmbl_17923,asmbl_17924	none	STRG.20247.4,blat.proc3825158.chain_1308	2	STRG.20247.2,blat.proc3825158.chain_1307	2
scaffold_2	ends_in_intron	16275034	16275034	+	asmbl_25104	none	blat.proc3825164.chain_2777	1	STRG.2566.1,blat.proc3825164.chain_2775	2
scaffold_12	alternate_exon	4785219	4785470	-	asmbl_8448,asmbl_8456	none	STRG.14660.1,blat.proc3825154.chain_3151,blat.proc3825154.chain_3152	3	STRG.14660.2,STRG.14660.3,STRG.14660.4,blat.proc3825154.chain_3145,blat.proc3825154.chain_3147,blat.proc3825154.chain_3148,blat.proc3825154.chain_3150,blat.proc3825154.chain_3153	8
scaffold_9	alternate_exon	5662331	5665791	+	asmbl_54062	none	STRG.11140.1,blat.proc3825168.chain_3686	2	blat.proc3825168.chain_3689	1
scaffold_5	skipped_exon	11991739	11993287	-	asmbl_44428,asmbl_44434	none	STRG.6453.1,blat.proc3825150.chain_2613,blat.proc3825150.chain_2614	3	STRG.6453.4,STRG.6453.5,STRG.6453.8,STRG.6453.9,blat.proc3825150.chain_2611,blat.proc3825150.chain_2612	6
scaffold_24	alternate_exon	2521131	2524103	-	asmbl_32793	none	blat.proc3825160.chain_3607	1	blat.proc3825160.chain_3608	1
scaffold_10	ends_in_intron	1490983	1490983	-	asmbl_4065	none	Trinity_GG_6656_c0_g1_i6,blat.proc3825154.chain_516	2	STRG.12025.2,blat.proc3825154.chain_512	2
scaffold_13	alternate_exon	1527761	1527812	-	asmbl_9416	none	Trinity_GG_8698_c0_g1_i1,blat.proc3825156.chain_404	2	STRG.15516.2,STRG.15516.3,STRG.15516.4,Trinity_GG_8698_c0_g1_i5,blat.proc3825156.chain_405	5
scaffold_13	alt_donor	9240040	9240041	+	asmbl_11181	none	STRG.16182.1,blat.proc3825172.chain_941	2	STRG.16182.2,blat.proc3825172.chain_942	2
scaffold_7	alt_donor	7186370	7186371	+	asmbl_49901,asmbl_49902	none	STRG.8975.1,STRG.8975.2,blat.proc3825168.chain_1480,blat.proc3825168.chain_1482	4	STRG.8975.3	1
scaffold_15	spliced_intron	15501375	15501520	+	asmbl_15799,asmbl_15801	none	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602	5	Trinity_GG_27698_c0_g1_i2,blat.proc3825172.chain_3599	2
scaffold_12	starts_in_intron	13392764	13392764	-	asmbl_8942	none	STRG.15219.4,blat.proc3825156.chain_4,blat.proc3825156.chain_6	3	STRG.15219.2,STRG.15219.3,STRG.15219.5,blat.proc3825156.chain_5,blat.proc3825156.chain_8	5
scaffold_732	spliced_intron	766	906	+	asmbl_51633	none	STRG.30447.1,blat.proc3825178.chain_3506,blat.proc3825178.chain_3507,blat.proc3825178.chain_3508	4	Trinity_GG_34148_c0_g1_i5	1
scaffold_1	starts_in_intron	16485221	16485221	-	asmbl_989	none	blat.proc3825148.chain_1106	1	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1098,blat.proc3825148.chain_1101,blat.proc3825148.chain_1102	6
scaffold_9	spliced_intron	16563697	16563787	-	asmbl_55581,asmbl_55582,asmbl_55583,asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55589,asmbl_55590,asmbl_55591	none	STRG.11806.1,STRG.11806.2,STRG.11806.3,STRG.11806.4,STRG.11806.5,blat.proc3825154.chain_266,blat.proc3825154.chain_267,blat.proc3825154.chain_270,blat.proc3825154.chain_271,blat.proc3825154.chain_272,blat.proc3825154.chain_273,blat.proc3825154.chain_274	12	STRG.11806.6	1
scaffold_13	retained_intron	6397233	6397368	+	asmbl_10927	none	Trinity_GG_26055_c0_g1_i2,blat.proc3825172.chain_653	2	STRG.15929.2,STRG.15929.3,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_654,blat.proc3825172.chain_655	8
scaffold_8	starts_in_intron	9476202	9476202	-	asmbl_52043	none	Trinity_GG_5695_c0_g1_i7,blat.proc3825152.chain_2471	2	STRG.10206.1,Trinity_GG_5695_c0_g1_i6,blat.proc3825152.chain_2473,blat.proc3825152.chain_2475,blat.proc3825152.chain_2477	5
scaffold_5	alternate_exon	17194834	17194965	+	asmbl_46143	none	STRG.6891.1	1	STRG.6891.3,blat.proc3825166.chain_3059	2
scaffold_28	ends_in_intron	5579985	5579985	+	asmbl_37593	none	Trinity_GG_33772_c0_g1_i1,blat.proc3825178.chain_2874	2	STRG.29692.1,STRG.29692.2,Trinity_GG_33772_c0_g1_i2,Trinity_GG_33772_c0_g1_i4,Trinity_GG_33772_c0_g1_i5,blat.proc3825178.chain_2876,blat.proc3825178.chain_2878,blat.proc3825178.chain_2879	8
scaffold_12	alternate_exon	16437545	16437601	+	asmbl_8184	none	STRG.15407.1	1	STRG.15407.2,blat.proc3825172.chain_120	2
scaffold_16	retained_intron	3706689	3706988	+	asmbl_16150	none	blat.proc3825174.chain_108	1	STRG.19177.1,blat.proc3825174.chain_106,blat.proc3825174.chain_107	3
scaffold_18	starts_in_intron	6000881	6000881	+	asmbl_20653	none	blat.proc3825174.chain_2282	1	STRG.21368.4,blat.proc3825174.chain_2284	2
scaffold_21	starts_in_intron	2266271	2266271	+	asmbl_28374	none	STRG.23848.2	1	STRG.23848.1,blat.proc3825176.chain_1002	2
scaffold_7	alternate_exon	8172270	8172330	+	asmbl_49957	none	STRG.9049.3,Trinity_GG_22317_c0_g2_i2,blat.proc3825168.chain_1533	3	STRG.9049.1,blat.proc3825168.chain_1534	2
scaffold_10	retained_exon	13120921	13121073	+	asmbl_3581	none	STRG.12919.2,Trinity_GG_24438_c1_g1_i1,blat.proc3825170.chain_1538,blat.proc3825170.chain_1539	4	STRG.12919.1	1
scaffold_8	alternate_exon	3482636	3486590	+	asmbl_52768,asmbl_52769	none	STRG.9846.1,blat.proc3825168.chain_2395,blat.proc3825168.chain_2396	3	STRG.9846.2	1
scaffold_8	alternate_exon	14565462	14569797	+	asmbl_53380	none	STRG.10543.1,blat.proc3825168.chain_3106	2	STRG.10543.4	1
scaffold_13	alt_acceptor	6628167	6628168	-	asmbl_9811	none	Trinity_GG_8986_c0_g1_i4,blat.proc3825156.chain_867	2	STRG.15960.1,Trinity_GG_8986_c0_g1_i1,blat.proc3825156.chain_869	3
scaffold_3	alt_acceptor	1767434	1767435	+	asmbl_39883	none	STRG.2994.1	1	STRG.2994.4	1
scaffold_9	ends_in_intron	3666117	3666117	+	asmbl_53909	none	STRG.10971.2	1	STRG.10971.4,blat.proc3825168.chain_3493	2
scaffold_1	starts_in_intron	14422410	14422410	-	asmbl_919	none	blat.proc3825148.chain_1058	1	STRG.1042.1,STRG.1042.2	2
scaffold_16	ends_in_intron	14607060	14607060	-	asmbl_17474,asmbl_17475	none	STRG.19858.4,STRG.19858.5,Trinity_GG_11148_c4_g1_i1,blat.proc3825158.chain_918	4	STRG.19858.3	1
scaffold_1	ends_in_intron	170152	170152	+	asmbl_1403	none	Trinity_GG_17335_c0_g1_i1,blat.proc3825164.chain_110	2	STRG.15.1,Trinity_GG_17335_c0_g1_i2,Trinity_GG_17335_c0_g2_i1,blat.proc3825164.chain_111,blat.proc3825164.chain_113	5
scaffold_20	spliced_intron	253640	253915	-	asmbl_25478	none	STRG.22719.3	1	STRG.22719.1	1
scaffold_1097	ends_in_intron	2541	2541	+	asmbl_5246	none	blat.proc3825178.chain_3554	1	STRG.30536.1,STRG.30536.3	2
scaffold_23	alt_donor	2992463	2992464	-	asmbl_30772	none	STRG.25748.3	1	STRG.25748.1,blat.proc3825160.chain_2952,blat.proc3825160.chain_2955	3
scaffold_23	alt_donor	7001682	7001683	-	asmbl_31004,asmbl_31006	none	STRG.26025.1,STRG.26025.3,STRG.26025.4,blat.proc3825160.chain_3182	4	STRG.26025.2	1
scaffold_5	alternate_exon	10307116	10307147	+	asmbl_45671	none	Trinity_GG_20765_c0_g1_i3,blat.proc3825166.chain_2546	2	STRG.6330.1,blat.proc3825166.chain_2544	2
scaffold_24	ends_in_intron	6225020	6225020	-	asmbl_32944,asmbl_32945	none	Trinity_GG_14882_c0_g1_i10,Trinity_GG_14882_c0_g1_i8,blat.proc3825160.chain_3734,blat.proc3825160.chain_3736	4	STRG.26685.1,STRG.26685.2,STRG.26685.3,STRG.26685.4,STRG.26685.5,STRG.26685.6,blat.proc3825160.chain_3732,blat.proc3825160.chain_3735,blat.proc3825160.chain_3737	9
scaffold_3	alternate_exon	6233566	6238088	-	asmbl_38925,asmbl_38929,asmbl_38930	none	STRG.3267.1,STRG.3267.2,STRG.3267.4,blat.proc3825148.chain_3065	4	STRG.3267.5	1
scaffold_11	retained_exon	6252622	6252705	+	asmbl_5620,asmbl_5625	none	STRG.13692.2,Trinity_GG_24860_c0_g1_i4,blat.proc3825170.chain_2237	3	STRG.13692.1,blat.proc3825170.chain_2239	2
scaffold_10	spliced_intron	11917146	11917229	-	asmbl_4801,asmbl_4803	none	STRG.12830.1,STRG.12830.2,blat.proc3825154.chain_1433	3	blat.proc3825154.chain_1434	1
scaffold_26	skipped_exon	5648505	5649556	-	asmbl_35610	none	STRG.28272.3	1	STRG.28272.1,STRG.28272.2,blat.proc3825162.chain_1525,blat.proc3825162.chain_1526,blat.proc3825162.chain_1527,blat.proc3825162.chain_1528,blat.proc3825162.chain_1529,blat.proc3825162.chain_1530,blat.proc3825162.chain_1531,blat.proc3825162.chain_1532	10
scaffold_8	retained_exon	16505854	16506689	-	asmbl_52411,asmbl_52414,asmbl_52417,asmbl_52418,asmbl_52421	none	STRG.10629.1,STRG.10629.4,blat.proc3825152.chain_2929,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	6	STRG.10629.5	1
scaffold_12	starts_in_intron	9505571	9505571	+	asmbl_7864	none	Trinity_GG_25533_c0_g1_i2,blat.proc3825170.chain_3429	2	STRG.14930.1,STRG.14930.2,Trinity_GG_25533_c0_g1_i1,Trinity_GG_25533_c0_g1_i3,blat.proc3825170.chain_3428,blat.proc3825170.chain_3430	6
scaffold_14	retained_intron	1111247	1111352	+	asmbl_11807	none	STRG.16770.1,blat.proc3825172.chain_1532	2	STRG.16770.3	1
scaffold_18	retained_exon	8883518	8883675	-	asmbl_20039	none	STRG.21551.3	1	STRG.21551.1,blat.proc3825158.chain_2468,blat.proc3825158.chain_2471	3
scaffold_21	alt_acceptor	4126171	4126172	+	asmbl_28513	none	STRG.23988.2	1	STRG.23988.1	1
scaffold_9	spliced_intron	11835838	11835897	+	asmbl_54386	none	STRG.11500.2	1	STRG.11500.1,Trinity_GG_23734_c0_g1_i1,blat.proc3825170.chain_327	3
scaffold_7	alt_acceptor	301383	301384	+	asmbl_49554	none	STRG.8601.2	1	STRG.8601.1,blat.proc3825168.chain_1090	2
scaffold_6	alt_donor	18834837	18834838	+	asmbl_47858	none	STRG.8556.2	1	STRG.8556.1,STRG.8556.3,blat.proc3825168.chain_960,blat.proc3825168.chain_961,blat.proc3825168.chain_962,blat.proc3825168.chain_963	6
scaffold_8	spliced_intron	17815077	17815245	+	asmbl_53505,asmbl_53506,asmbl_53513	none	STRG.10693.1,STRG.10693.2,Trinity_GG_23223_c0_g1_i5,Trinity_GG_23223_c0_g1_i7,blat.proc3825168.chain_3182,blat.proc3825168.chain_3183,blat.proc3825168.chain_3184	7	blat.proc3825168.chain_3180,blat.proc3825168.chain_3181	2
scaffold_9	spliced_intron	14817657	14817774	-	asmbl_55497,asmbl_55499	none	STRG.11702.2,STRG.11702.5,blat.proc3825154.chain_159	3	STRG.11702.3,Trinity_GG_6457_c0_g1_i1,blat.proc3825154.chain_161,blat.proc3825154.chain_164	4
scaffold_18	starts_in_intron	6775863	6775863	-	asmbl_19914	none	blat.proc3825158.chain_2319	1	STRG.21382.1,STRG.21382.2,blat.proc3825158.chain_2318	3
scaffold_18	alt_acceptor	206509	206510	+	asmbl_20274,asmbl_20276	none	STRG.20974.3,Trinity_GG_28858_c0_g1_i6,blat.proc3825174.chain_1919	3	STRG.20974.1,STRG.20974.2,Trinity_GG_28858_c0_g1_i4,blat.proc3825174.chain_1917,blat.proc3825174.chain_1918,blat.proc3825174.chain_1920,blat.proc3825174.chain_1921,blat.proc3825174.chain_1922	8
scaffold_7	starts_in_intron	10408988	10408988	+	asmbl_50122,asmbl_50123	none	STRG.9223.3,STRG.9223.4	2	STRG.9223.2	1
scaffold_3	alt_acceptor	13160466	13160467	+	asmbl_40423	none	STRG.3681.1,blat.proc3825166.chain_136	2	STRG.3681.2,blat.proc3825166.chain_135,blat.proc3825166.chain_137	3
scaffold_17	retained_intron	14729874	14729921	+	asmbl_19423	none	STRG.20946.1,Trinity_GG_28815_c0_g1_i1,blat.proc3825174.chain_1839	3	STRG.20946.2	1
scaffold_2	skipped_exon	2297619	2300475	-	asmbl_22885	none	STRG.1674.3	1	STRG.1674.4	1
scaffold_18	alternate_exon	8883518	8885318	-	asmbl_20039	none	STRG.21551.3	1	STRG.21551.2	1
scaffold_14	alternate_exon	9500556	9500583	+	asmbl_12288	none	STRG.17343.2	1	STRG.17343.1,Trinity_GG_26861_c0_g1_i2,Trinity_GG_26861_c0_g1_i3,blat.proc3825172.chain_2114	4
scaffold_25	alternate_exon	8704920	8705023	+	asmbl_33758,asmbl_33759	none	STRG.27702.3,blat.proc3825178.chain_771	2	STRG.27702.1,STRG.27702.2,blat.proc3825178.chain_762,blat.proc3825178.chain_768,blat.proc3825178.chain_769,blat.proc3825178.chain_770	6
scaffold_10	skipped_exon	974802	975513	-	asmbl_4019	none	STRG.11979.2,Trinity_GG_6637_c0_g1_i3	2	STRG.11979.1,Trinity_GG_6637_c0_g1_i5,Trinity_GG_6637_c0_g1_i6,Trinity_GG_6637_c0_g1_i7,Trinity_GG_6637_c0_g1_i9,blat.proc3825154.chain_471	6
scaffold_26	alternate_exon	5033647	5035808	+	asmbl_34943,asmbl_34944,asmbl_34945,asmbl_34946,asmbl_34950,asmbl_34954,asmbl_34955,asmbl_34957	none	STRG.28240.1,STRG.28240.2,STRG.28240.3,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1177,blat.proc3825178.chain_1179,blat.proc3825178.chain_1180,blat.proc3825178.chain_1182	11	STRG.28240.5,blat.proc3825178.chain_1176,blat.proc3825178.chain_1178	3
scaffold_21	starts_in_intron	3013013	3013013	+	asmbl_28437	none	blat.proc3825176.chain_1105	1	STRG.23928.1,STRG.23928.2,blat.proc3825176.chain_1102,blat.proc3825176.chain_1103,blat.proc3825176.chain_1104	5
scaffold_11	alternate_exon	8431858	8434187	+	asmbl_5770	none	STRG.13861.1,Trinity_GG_24892_c0_g2_i1,blat.proc3825170.chain_2305	3	STRG.13861.2,Trinity_GG_24892_c0_g1_i3,blat.proc3825170.chain_2299	3
scaffold_21	spliced_intron	10497987	10498087	-	asmbl_28047,asmbl_28048,asmbl_28050	none	STRG.24519.1,STRG.24519.2,blat.proc3825160.chain_1740,blat.proc3825160.chain_1741,blat.proc3825160.chain_1743,blat.proc3825160.chain_1745	6	blat.proc3825160.chain_1742	1
scaffold_7	retained_intron	5235519	5236725	+	asmbl_49797,asmbl_49802	none	STRG.8866.2,blat.proc3825168.chain_1363	2	STRG.8866.1,blat.proc3825168.chain_1365,blat.proc3825168.chain_1366	3
scaffold_19	spliced_intron	13254452	13254529	-	asmbl_22627	none	blat.proc3825158.chain_3478	1	STRG.22643.1,Trinity_GG_12610_c0_g1_i1,blat.proc3825158.chain_3477	3
scaffold_27	alternate_exon	391377	394632	-	asmbl_36685	none	STRG.28565.1,blat.proc3825162.chain_1812	2	STRG.28565.2	1
scaffold_14	alternate_exon	16055710	16055746	+	asmbl_12667	none	blat.proc3825172.chain_2572	1	STRG.17848.1,blat.proc3825172.chain_2571	2
scaffold_26	ends_in_intron	3268216	3268216	+	asmbl_34770	none	STRG.28011.3	1	STRG.28011.2,blat.proc3825178.chain_985,blat.proc3825178.chain_986	3
scaffold_21	alt_acceptor	1684481	1684482	-	asmbl_27415	none	STRG.23820.2	1	STRG.23820.1,blat.proc3825160.chain_945	2
scaffold_12	alt_donor	9234416	9234417	-	asmbl_8662,asmbl_8663,asmbl_8664,asmbl_8666,asmbl_8669,asmbl_8670,asmbl_8671	none	STRG.14939.3,STRG.14939.5,blat.proc3825154.chain_3447,blat.proc3825154.chain_3450,blat.proc3825154.chain_3451,blat.proc3825154.chain_3454,blat.proc3825154.chain_3455,blat.proc3825154.chain_3456	8	STRG.14939.1	1
scaffold_8	starts_in_intron	10134549	10134549	+	asmbl_53146	none	Trinity_GG_23027_c0_g1_i2,blat.proc3825168.chain_2839	2	STRG.10269.1,Trinity_GG_23027_c0_g1_i1,blat.proc3825168.chain_2838	3
scaffold_24	spliced_intron	1939606	1939723	-	asmbl_32751	none	STRG.26420.2,blat.proc3825160.chain_3552	2	STRG.26420.1,blat.proc3825160.chain_3551	2
scaffold_9	alt_donor	11070749	11070750	-	asmbl_55272	none	STRG.11422.2,Trinity_GG_6310_c0_g1_i1,blat.proc3825152.chain_3653	3	STRG.11422.1,Trinity_GG_6310_c0_g1_i3,blat.proc3825152.chain_3652	3
scaffold_10	spliced_intron	716590	716853	-	asmbl_3988,asmbl_3991	none	STRG.11957.1,blat.proc3825154.chain_545	2	STRG.11957.2,STRG.11957.3,STRG.11957.5,Trinity_GG_6669_c0_g1_i6,blat.proc3825154.chain_541	5
scaffold_10	retained_intron	8895156	8895317	-	asmbl_4623,asmbl_4625	none	blat.proc3825154.chain_1273,blat.proc3825154.chain_1275	2	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1274	11
scaffold_13	ends_in_intron	1040388	1040388	+	asmbl_10526	none	Trinity_GG_25782_c0_g1_i2,blat.proc3825172.chain_127	2	STRG.15481.1,STRG.15481.2,blat.proc3825172.chain_126	3
scaffold_7	alternate_exon	6651730	6651884	-	asmbl_50927	none	STRG.8936.1,blat.proc3825152.chain_1366	2	STRG.8936.2,blat.proc3825152.chain_1367	2
scaffold_3	alt_donor	11307703	11307704	-	asmbl_39143	none	blat.proc3825148.chain_3427	1	STRG.3563.1,blat.proc3825148.chain_3428	2
scaffold_4	retained_intron	19591639	19591710	-	asmbl_43461	none	STRG.5548.1	1	blat.proc3825150.chain_1745	1
scaffold_5	spliced_intron	7711197	7711308	-	asmbl_44189	none	blat.proc3825150.chain_2357	1	STRG.6151.1,STRG.6151.2,blat.proc3825150.chain_2358,blat.proc3825150.chain_2359	4
scaffold_21	skipped_exon	606869	609625	+	asmbl_28281	none	STRG.23750.1,blat.proc3825176.chain_967	2	STRG.23750.2,blat.proc3825176.chain_968	2
scaffold_11	retained_intron	5501775	5502119	-	asmbl_6664,asmbl_6666	none	STRG.13620.2,blat.proc3825154.chain_2127,blat.proc3825154.chain_2129	3	STRG.13620.1,blat.proc3825154.chain_2128	2
scaffold_8	spliced_intron	9112712	9112870	-	asmbl_52000,asmbl_52001	none	STRG.10169.1,STRG.10169.2,blat.proc3825152.chain_2372	3	blat.proc3825152.chain_2371,blat.proc3825152.chain_2373	2
scaffold_12	retained_exon	10533666	10533775	+	asmbl_7925	none	STRG.15021.1,Trinity_GG_25582_c0_g1_i2,blat.proc3825170.chain_3526	3	STRG.15021.2	1
scaffold_52	starts_in_intron	620	620	-	asmbl_46524	none	Trinity_GG_16867_c0_g1_i2	1	STRG.30060.1,STRG.30060.2,STRG.30060.3,blat.proc3825162.chain_3235,blat.proc3825162.chain_3236	5
scaffold_11	spliced_intron	13035297	13035575	-	asmbl_7114	none	STRG.14179.3,blat.proc3825154.chain_2756	2	STRG.14179.2,blat.proc3825154.chain_2758	2
scaffold_5	alt_acceptor	11639306	11639307	+	asmbl_45752	none	STRG.6424.3,Trinity_GG_20751_c0_g1_i2,blat.proc3825166.chain_2517	3	STRG.6424.2,Trinity_GG_20751_c0_g1_i3,blat.proc3825166.chain_2519	3
scaffold_18	retained_intron	4724166	4724270	-	asmbl_19820	none	Trinity_GG_11858_c0_g1_i3,blat.proc3825158.chain_2139	2	STRG.21264.1,blat.proc3825158.chain_2140	2
scaffold_24	alternate_exon	9084646	9084820	+	asmbl_32499,asmbl_32501	none	STRG.26951.1,STRG.26951.2,blat.proc3825178.chain_158	3	STRG.26951.3	1
scaffold_16	retained_intron	433381	433451	-	asmbl_16871,asmbl_16874	none	blat.proc3825158.chain_196,blat.proc3825158.chain_200	2	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_197,blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_201,blat.proc3825158.chain_202,blat.proc3825158.chain_203,blat.proc3825158.chain_204	9
scaffold_2	spliced_intron	14623015	14623109	+	asmbl_24963	none	STRG.2458.1,blat.proc3825164.chain_2726	2	blat.proc3825164.chain_2725	1
scaffold_8	spliced_intron	18534391	18534486	+	asmbl_53562	none	STRG.10749.1	1	blat.proc3825168.chain_3259	1
scaffold_6	spliced_intron	13871424	13871524	+	asmbl_47541	none	STRG.8133.1,Trinity_GG_21790_c0_g1_i3,Trinity_GG_4651_c0_g1_i1,blat.proc3825152.chain_605,blat.proc3825168.chain_639	5	Trinity_GG_21790_c0_g1_i2,Trinity_GG_4651_c0_g1_i3,blat.proc3825152.chain_604,blat.proc3825168.chain_641	4
scaffold_20	alt_acceptor	10095991	10095992	+	asmbl_26924	none	STRG.23554.2	1	STRG.23554.1,blat.proc3825176.chain_712	2
scaffold_14	starts_in_intron	15540267	15540267	+	asmbl_12616	none	Trinity_GG_27111_c0_g1_i2,blat.proc3825172.chain_2549	2	Trinity_GG_27111_c0_g1_i1,blat.proc3825172.chain_2548	2
scaffold_8	alternate_exon	3616450	3616515	+	asmbl_52791	none	STRG.9863.5	1	STRG.9863.1,STRG.9863.2,STRG.9863.3,STRG.9863.4,blat.proc3825168.chain_2408,blat.proc3825168.chain_2410	6
scaffold_12	ends_in_intron	7965950	7965950	+	asmbl_7808	none	Trinity_GG_25527_c0_g1_i4	1	STRG.14862.1,blat.proc3825170.chain_3413	2
scaffold_7	alternate_exon	11873681	11873714	-	asmbl_51172	none	Trinity_GG_5251_c0_g1_i3,blat.proc3825152.chain_1679	2	STRG.9306.1,STRG.9306.2	2
scaffold_19	retained_intron	12247353	12247482	-	asmbl_22471,asmbl_22474	none	blat.proc3825158.chain_3308,blat.proc3825158.chain_3310	2	STRG.22552.1,STRG.22552.2,blat.proc3825158.chain_3307,blat.proc3825158.chain_3309,blat.proc3825158.chain_3311,blat.proc3825158.chain_3313	6
scaffold_20	ends_in_intron	10318993	10318993	+	asmbl_26948	none	blat.proc3825176.chain_694	1	STRG.23577.1,Trinity_GG_30312_c0_g1_i2,blat.proc3825176.chain_689	3
scaffold_1	alt_acceptor	18028833	18028834	-	asmbl_1076	none	STRG.1268.7	1	STRG.1268.4,STRG.1268.5	2
scaffold_340	alt_acceptor	1148	1149	+	asmbl_41010,asmbl_41011,asmbl_41012	none	STRG.30295.3,STRG.30295.4,STRG.30295.5	3	STRG.30295.1	1
scaffold_5	spliced_intron	12755181	12755356	-	asmbl_44484	none	STRG.6511.1,blat.proc3825150.chain_2652	2	STRG.6511.2,Trinity_GG_3632_c1_g1_i2,blat.proc3825150.chain_2651	3
scaffold_7	alt_donor	10340329	10340330	-	asmbl_51120	none	STRG.9215.2	1	STRG.9215.1,STRG.9215.3,Trinity_GG_5194_c0_g1_i1,blat.proc3825152.chain_1576	4
scaffold_17	alt_acceptor	939920	939921	+	asmbl_18579,asmbl_18580	none	STRG.19937.1,STRG.19937.3,blat.proc3825174.chain_819	3	STRG.19937.2,blat.proc3825174.chain_818	2
scaffold_6	alt_donor	12554853	12554854	-	asmbl_48825,asmbl_48829	none	STRG.8017.1,blat.proc3825152.chain_423	2	STRG.8017.2,blat.proc3825152.chain_427	2
scaffold_8	retained_intron	1801739	1801810	-	asmbl_51707	none	blat.proc3825168.chain_2303	1	STRG.9780.2	1
scaffold_13	spliced_intron	2271214	2271358	-	asmbl_9439,asmbl_9440,asmbl_9444,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.5,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_397,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9	STRG.15548.3,STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_395,blat.proc3825156.chain_400	11
scaffold_13	alt_donor	4458561	4458562	+	asmbl_10794	none	STRG.15770.4,Trinity_GG_25976_c0_g2_i2,blat.proc3825172.chain_507	3	STRG.15770.3,blat.proc3825172.chain_511	2
scaffold_26	starts_in_intron	4453707	4453707	+	asmbl_34904	none	blat.proc3825178.chain_1197	1	STRG.28163.1,blat.proc3825178.chain_1196	2
scaffold_18	retained_exon	3915822	3916194	-	asmbl_19783	none	STRG.21203.4	1	blat.proc3825158.chain_2160	1
scaffold_13	alt_donor	2507240	2507241	+	asmbl_10620	none	STRG.15559.2,Trinity_GG_25851_c0_g1_i4,blat.proc3825172.chain_285	3	STRG.15559.1,Trinity_GG_25851_c0_g1_i5,blat.proc3825172.chain_284	3
scaffold_15	starts_in_intron	4817264	4817264	-	asmbl_14164	none	blat.proc3825156.chain_2946	1	STRG.18206.1,blat.proc3825156.chain_2945,blat.proc3825156.chain_2948	3
scaffold_25	alt_acceptor	690824	690825	+	asmbl_33350	none	STRG.27123.2,blat.proc3825178.chain_238	2	STRG.27123.1	1
scaffold_20	retained_exon	8018476	8018855	-	asmbl_25954	none	STRG.23357.2,blat.proc3825160.chain_477	2	STRG.23357.1	1
scaffold_13	alternate_exon	8350938	8355997	+	asmbl_11125,asmbl_11128,asmbl_11129,asmbl_11132	none	STRG.16130.1,STRG.16130.2,STRG.16130.3,blat.proc3825172.chain_915,blat.proc3825172.chain_917	5	STRG.16130.4	1
scaffold_10	starts_in_intron	13776379	13776379	-	asmbl_4932	none	blat.proc3825154.chain_1608	1	blat.proc3825154.chain_1607	1
scaffold_2	starts_in_intron	7881050	7881050	+	asmbl_24583	none	Trinity_GG_18501_c0_g1_i20,blat.proc3825164.chain_2293	2	STRG.2083.1,Trinity_GG_18501_c0_g1_i10,Trinity_GG_18501_c0_g1_i16,Trinity_GG_18501_c0_g1_i4,blat.proc3825164.chain_2289,blat.proc3825164.chain_2291,blat.proc3825164.chain_2292	7
scaffold_1	starts_in_intron	3522678	3522678	-	asmbl_161	none	Trinity_GG_112_c0_g1_i2	1	STRG.220.2,STRG.220.4	2
scaffold_4	alt_acceptor	1907781	1907782	+	asmbl_41139	none	STRG.4205.1	1	STRG.4205.2,blat.proc3825166.chain_666	2
scaffold_1	alt_acceptor	18485288	18485289	-	asmbl_1107,asmbl_1116	none	STRG.1298.2,STRG.1298.4,blat.proc3825148.chain_1322	3	STRG.1298.3	1
scaffold_17	starts_in_intron	1361419	1361419	-	asmbl_17703,asmbl_17705	none	STRG.19976.1,blat.proc3825158.chain_1023	2	blat.proc3825158.chain_1024	1
scaffold_11	alternate_exon	8375141	8376839	-	asmbl_6863	none	STRG.13853.2	1	STRG.13853.1	1
scaffold_19	ends_in_intron	12130532	12130532	+	asmbl_21753,asmbl_21754	none	Trinity_GG_29777_c0_g1_i2,Trinity_GG_29777_c0_g1_i3	2	STRG.22543.1,Trinity_GG_29777_c0_g1_i1,blat.proc3825174.chain_3552	3
scaffold_5	spliced_intron	15767254	15767399	+	asmbl_46014,asmbl_46017,asmbl_46020,asmbl_46022	none	STRG.6771.1,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2918,blat.proc3825166.chain_2923	5	blat.proc3825166.chain_2915,blat.proc3825166.chain_2919,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922	4
scaffold_2	alt_acceptor	7470199	7470200	-	asmbl_23265	none	blat.proc3825148.chain_2063	1	STRG.2074.2,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057	3
scaffold_15	ends_in_intron	5319331	5319331	-	asmbl_14195,asmbl_14197	none	STRG.18225.2,Trinity_GG_10261_c0_g1_i2,Trinity_GG_10261_c0_g1_i3,blat.proc3825156.chain_3081,blat.proc3825156.chain_3084	5	STRG.18225.1,blat.proc3825156.chain_3082,blat.proc3825156.chain_3083,blat.proc3825156.chain_3085	4
scaffold_1	spliced_intron	20687634	20687780	-	asmbl_1190	none	STRG.1410.1	1	STRG.1410.2	1
scaffold_11	alternate_exon	9699752	9700127	-	asmbl_6956	none	Trinity_GG_7828_c1_g1_i1,blat.proc3825154.chain_2535	2	STRG.13992.5	1
scaffold_10	skipped_exon	12898265	12898915	-	asmbl_4837,asmbl_4841,asmbl_4842	none	STRG.12887.1,blat.proc3825154.chain_1472,blat.proc3825154.chain_1474,blat.proc3825154.chain_1476	4	blat.proc3825154.chain_1475	1
scaffold_8	alt_donor	16398400	16398401	-	asmbl_52392	none	blat.proc3825152.chain_2851	1	STRG.10626.4,blat.proc3825152.chain_2846	2
scaffold_11	ends_in_intron	7668386	7668386	-	asmbl_6799	none	blat.proc3825154.chain_2376	1	STRG.13780.1,STRG.13780.2,STRG.13780.3,blat.proc3825154.chain_2375	4
scaffold_2	retained_intron	14193588	14193798	-	asmbl_23566	none	STRG.2416.1	1	STRG.2416.3	1
scaffold_27	skipped_exon	2830216	2832414	+	asmbl_36126	none	STRG.28768.2,blat.proc3825178.chain_1932	2	STRG.28768.3,blat.proc3825178.chain_1936	2
scaffold_22	retained_exon	7693718	7693776	+	asmbl_30213	none	STRG.25121.1	1	blat.proc3825176.chain_2183	1
scaffold_11	ends_in_intron	205369	205369	-	asmbl_6380	none	Trinity_GG_7416_c0_g1_i3,blat.proc3825154.chain_1829	2	STRG.13253.1,STRG.13253.2,blat.proc3825154.chain_1828	3
scaffold_10	retained_intron	8897219	8897475	-	asmbl_4620	none	Trinity_GG_7072_c0_g1_i21,blat.proc3825154.chain_1270	2	STRG.12637.1,blat.proc3825154.chain_1264,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	9
scaffold_4	alt_donor	3955927	3955928	-	asmbl_42471	none	STRG.4303.1,blat.proc3825150.chain_527	2	STRG.4303.2,blat.proc3825150.chain_526	2
scaffold_15	starts_in_intron	1274743	1274743	+	asmbl_15003	none	blat.proc3825172.chain_2579	1	STRG.17947.1,blat.proc3825172.chain_2578	2
scaffold_20	alt_acceptor	11672378	11672379	-	asmbl_26172	none	STRG.23670.1,blat.proc3825160.chain_748	2	STRG.23670.2,blat.proc3825160.chain_751	2
scaffold_12	alt_acceptor	4983367	4983368	+	asmbl_7631	none	blat.proc3825170.chain_3140	1	STRG.14669.1,blat.proc3825170.chain_3134,blat.proc3825170.chain_3135,blat.proc3825170.chain_3136,blat.proc3825170.chain_3139,blat.proc3825170.chain_3141	6
scaffold_19	alt_acceptor	5137276	5137277	+	asmbl_21351	none	STRG.22079.1,blat.proc3825174.chain_3015	2	STRG.22079.2,blat.proc3825174.chain_3016	2
scaffold_14	starts_in_intron	6283334	6283334	+	asmbl_12060	none	STRG.17079.5,blat.proc3825172.chain_1851	2	STRG.17079.1,STRG.17079.2,STRG.17079.3,STRG.17079.4,blat.proc3825172.chain_1848,blat.proc3825172.chain_1849,blat.proc3825172.chain_1850,blat.proc3825172.chain_1853	8
scaffold_9	alt_acceptor	3632110	3632111	-	asmbl_54915	none	STRG.10966.1,blat.proc3825152.chain_3258	2	STRG.10966.2	1
scaffold_11	alt_donor	7924431	7924432	+	asmbl_5696,asmbl_5699	none	STRG.13804.3,STRG.13804.5,Trinity_GG_24903_c0_g1_i2,blat.proc3825170.chain_2323	4	STRG.13804.1,Trinity_GG_24903_c0_g1_i1,blat.proc3825170.chain_2321	3
scaffold_21	alt_donor	256693	256694	-	asmbl_27287,asmbl_27294	none	Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_802,blat.proc3825160.chain_813	3	STRG.23725.1,STRG.23725.2,STRG.23725.3,STRG.23725.5,STRG.23725.6,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_807,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_811,blat.proc3825160.chain_812	14
scaffold_3	alt_acceptor	17530906	17530907	+	asmbl_40685	none	STRG.3984.1,blat.proc3825166.chain_442	2	STRG.3984.2	1
scaffold_13	spliced_intron	4458561	4458799	+	asmbl_10794,asmbl_10796,asmbl_10798	none	STRG.15770.1,STRG.15770.4,Trinity_GG_25976_c0_g1_i6,blat.proc3825172.chain_509,blat.proc3825172.chain_512	5	STRG.15770.2,Trinity_GG_25976_c0_g1_i2,blat.proc3825172.chain_508	3
scaffold_1	spliced_intron	12689792	12689998	-	asmbl_745,asmbl_747	none	STRG.893.1,STRG.893.2,STRG.893.4,blat.proc3825148.chain_876	4	STRG.893.3,Trinity_GG_464_c0_g1_i1,Trinity_GG_464_c0_g1_i2,blat.proc3825148.chain_877,blat.proc3825148.chain_879	5
scaffold_13	alternate_exon	14563634	14566043	-	asmbl_10198	none	STRG.16504.1,blat.proc3825156.chain_1271	2	blat.proc3825156.chain_1269	1
scaffold_11	retained_intron	14587104	14587452	+	asmbl_6098,asmbl_6099	none	STRG.14259.3,blat.proc3825170.chain_2701	2	STRG.14259.2,blat.proc3825170.chain_2699,blat.proc3825170.chain_2702	3
scaffold_18	skipped_exon	7686561	7686884	+	asmbl_20777,asmbl_20778,asmbl_20780,asmbl_20786	none	STRG.21474.1,STRG.21474.4,Trinity_GG_29179_c0_g1_i11,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2510,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515	7	STRG.21474.2,blat.proc3825174.chain_2519	2
scaffold_7	retained_exon	9864296	9864325	-	asmbl_51091,asmbl_51094	none	STRG.9189.3,blat.proc3825152.chain_1468	2	STRG.9189.1,blat.proc3825152.chain_1466	2
scaffold_4	alt_acceptor	18292734	18292735	+	asmbl_42095	none	STRG.5428.5	1	STRG.5428.1,STRG.5428.2,STRG.5428.4,blat.proc3825166.chain_1743,blat.proc3825166.chain_1744,blat.proc3825166.chain_1745	6
scaffold_2	skipped_exon	7781346	7782118	+	asmbl_24570,asmbl_24571,asmbl_24572,asmbl_24573,asmbl_24576	none	STRG.2075.1,STRG.2075.2,STRG.2075.3,STRG.2075.4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2228,blat.proc3825164.chain_2229,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	9	STRG.2075.5	1
scaffold_7	retained_intron	4544752	4545008	+	asmbl_49747	none	blat.proc3825168.chain_1300	1	STRG.8829.1,blat.proc3825168.chain_1298,blat.proc3825168.chain_1299,blat.proc3825168.chain_1301	4
scaffold_2	alt_donor	2075288	2075289	+	asmbl_24233	none	STRG.1662.2,Trinity_GG_18249_c0_g1_i3,blat.proc3825164.chain_1805	3	STRG.1662.1,Trinity_GG_18249_c0_g1_i1,blat.proc3825164.chain_1803	3
scaffold_2	retained_intron	13071028	13071351	-	asmbl_23490,asmbl_23491,asmbl_23493	none	STRG.2337.4,STRG.2337.5,blat.proc3825148.chain_2342	3	STRG.2337.1,STRG.2337.2,STRG.2337.3,blat.proc3825148.chain_2341,blat.proc3825148.chain_2343	5
scaffold_3	alt_donor	10628826	10628827	+	asmbl_40280,asmbl_40281,asmbl_40288	none	blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3688	3	STRG.3513.1,STRG.3513.7,blat.proc3825164.chain_3684	3
scaffold_21	spliced_intron	5594441	5594553	-	asmbl_27677	none	STRG.24091.1,blat.proc3825160.chain_1252	2	Trinity_GG_13438_c0_g1_i2,blat.proc3825160.chain_1253	2
scaffold_27	starts_in_intron	941669	941669	-	asmbl_36728	none	Trinity_GG_16005_c0_g1_i3,blat.proc3825162.chain_1850	2	STRG.28593.1,STRG.28593.2,Trinity_GG_16005_c0_g1_i1,Trinity_GG_16005_c0_g1_i2,blat.proc3825162.chain_1848,blat.proc3825162.chain_1849	6
scaffold_10	alt_acceptor	7673370	7673371	+	asmbl_3294	none	STRG.12556.3	1	STRG.12556.4,Trinity_GG_24268_c0_g1_i5,blat.proc3825170.chain_1221	3
scaffold_9	alternate_exon	12112366	12112504	+	asmbl_54409	none	STRG.11537.1,blat.proc3825170.chain_366	2	blat.proc3825170.chain_368	1
scaffold_28	spliced_intron	7528910	7529100	+	asmbl_37689,asmbl_37692	none	STRG.29834.1,blat.proc3825178.chain_2987,blat.proc3825178.chain_2990	3	blat.proc3825178.chain_2986	1
scaffold_27	ends_in_intron	4758072	4758072	+	asmbl_36315	none	blat.proc3825178.chain_2151	1	STRG.28914.1	1
scaffold_6	alt_donor	1498115	1498116	+	asmbl_46709	none	STRG.7191.3,Trinity_GG_21281_c0_g1_i2,blat.proc3825166.chain_3405	3	STRG.7191.2,blat.proc3825166.chain_3406	2
scaffold_8	retained_intron	7483397	7483530	-	asmbl_51915	none	blat.proc3825152.chain_2256	1	STRG.10078.1,blat.proc3825152.chain_2259	2
scaffold_12	ends_in_intron	8356388	8356388	-	asmbl_8621	none	blat.proc3825154.chain_3295	1	blat.proc3825154.chain_3294	1
scaffold_2	retained_intron	10725827	10726142	+	asmbl_24729,asmbl_24730	none	STRG.2242.2,blat.proc3825164.chain_2368	2	STRG.2242.1,blat.proc3825164.chain_2369	2
scaffold_21	alt_acceptor	5528446	5528447	+	asmbl_28575	none	STRG.24084.2	1	STRG.24084.1,blat.proc3825176.chain_1289	2
scaffold_6	spliced_intron	5753701	5753903	+	asmbl_46973,asmbl_46974,asmbl_46976,asmbl_46978	none	STRG.7534.1,blat.proc3825166.chain_3732,blat.proc3825166.chain_3733,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	5	blat.proc3825166.chain_3731,blat.proc3825166.chain_3735	2
scaffold_7	alternate_exon	17318817	17318924	+	asmbl_50478,asmbl_50479	none	STRG.9607.2,STRG.9607.3,blat.proc3825168.chain_2128	3	STRG.9607.1	1
scaffold_6	retained_intron	13573940	13574663	-	asmbl_48913	none	STRG.8098.1,Trinity_GG_4614_c2_g1_i2,Trinity_GG_4614_c2_g1_i5,blat.proc3825152.chain_536,blat.proc3825152.chain_540	5	STRG.8098.2,STRG.8098.3,STRG.8098.4,Trinity_GG_4614_c2_g1_i3,Trinity_GG_4614_c2_g1_i4,blat.proc3825152.chain_538,blat.proc3825152.chain_539	7
scaffold_28	retained_intron	295738	295857	+	asmbl_37272	none	blat.proc3825178.chain_2491	1	STRG.29263.1,STRG.29263.2,STRG.29263.3,blat.proc3825178.chain_2488,blat.proc3825178.chain_2489,blat.proc3825178.chain_2490,blat.proc3825178.chain_2492	7
scaffold_24	ends_in_intron	3755997	3755997	-	asmbl_32848	none	blat.proc3825160.chain_3684	1	STRG.26576.1,STRG.26576.2,blat.proc3825160.chain_3687	3
scaffold_18	ends_in_intron	13808709	13808709	+	asmbl_21042,asmbl_21045	none	Trinity_GG_29370_c1_g1_i1,Trinity_GG_29370_c1_g1_i3,blat.proc3825174.chain_2840,blat.proc3825174.chain_2843	4	Trinity_GG_29370_c1_g1_i4,blat.proc3825174.chain_2841	2
scaffold_12	starts_in_intron	10233073	10233073	-	asmbl_8741	none	blat.proc3825154.chain_3505	1	STRG.14998.1,blat.proc3825154.chain_3506	2
scaffold_1	alternate_exon	5997451	6000369	-	asmbl_311	none	STRG.404.1,blat.proc3825148.chain_397	2	STRG.404.3,blat.proc3825148.chain_400,blat.proc3825148.chain_402	3
scaffold_15	alt_acceptor	12391906	12391907	-	asmbl_14575	none	STRG.18695.2	1	STRG.18695.3,STRG.18695.4	2
scaffold_11	alt_donor	14462946	14462947	-	asmbl_7165	none	STRG.14244.1,blat.proc3825154.chain_2780	2	STRG.14244.3	1
scaffold_7	retained_intron	12270450	12271072	+	asmbl_50232,asmbl_50234	none	STRG.9326.5,blat.proc3825168.chain_1801	2	STRG.9326.3,Trinity_GG_22467_c0_g1_i1,Trinity_GG_22467_c0_g1_i3,blat.proc3825168.chain_1802	4
scaffold_19	ends_in_intron	12317789	12317789	+	asmbl_21778	none	blat.proc3825174.chain_3585	1	STRG.22566.2,blat.proc3825174.chain_3583	2
scaffold_4	spliced_intron	5650431	5650953	-	asmbl_42616,asmbl_42618,asmbl_42619,asmbl_42620,asmbl_42623,asmbl_42624,asmbl_42627,asmbl_42628	none	STRG.4472.1,STRG.4472.2,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_658,blat.proc3825150.chain_663,blat.proc3825150.chain_664,blat.proc3825150.chain_666,blat.proc3825150.chain_667,blat.proc3825150.chain_668	10	STRG.4472.4,blat.proc3825150.chain_656,blat.proc3825150.chain_665	3
scaffold_11	skipped_exon	8478295	8479288	+	asmbl_5784	none	STRG.13864.2,Trinity_GG_24888_c0_g1_i4,blat.proc3825170.chain_2292	3	STRG.13864.1,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2291	3
scaffold_16	alt_donor	10485586	10485587	+	asmbl_16543	none	STRG.19619.1	1	STRG.19619.2	1
scaffold_6	spliced_intron	13268432	13268569	+	asmbl_47512,asmbl_47516,asmbl_47517	none	STRG.8090.1,STRG.8090.2,STRG.8090.3,blat.proc3825168.chain_521	4	blat.proc3825168.chain_522	1
scaffold_10	ends_in_intron	925980	925980	-	asmbl_4010	none	Trinity_GG_6668_c0_g1_i1,blat.proc3825154.chain_540	2	STRG.11968.1,STRG.11968.2,Trinity_GG_6668_c0_g1_i2,blat.proc3825154.chain_538	4
scaffold_1	starts_in_intron	13883408	13883408	-	asmbl_855	none	blat.proc3825148.chain_1006	1	STRG.996.1,STRG.996.2,STRG.996.3,STRG.996.4,blat.proc3825148.chain_1003,blat.proc3825148.chain_1004,blat.proc3825148.chain_1005	7
scaffold_1	starts_in_intron	11800133	11800133	-	asmbl_671	none	blat.proc3825148.chain_790	1	STRG.796.1,STRG.796.3,blat.proc3825148.chain_791	3
scaffold_2	alt_donor	13898137	13898138	-	asmbl_23533	none	Trinity_GG_1330_c4_g1_i1,blat.proc3825148.chain_2396	2	STRG.2384.1,STRG.2384.2,blat.proc3825148.chain_2389,blat.proc3825148.chain_2390,blat.proc3825148.chain_2391,blat.proc3825148.chain_2392	6
scaffold_2	alt_donor	7409545	7409546	-	asmbl_23251,asmbl_23258	none	STRG.2065.3,STRG.2065.6,Trinity_GG_1101_c0_g1_i4,blat.proc3825148.chain_1982	4	STRG.2065.1,STRG.2065.5,Trinity_GG_1101_c0_g1_i2,Trinity_GG_1101_c0_g1_i7,blat.proc3825148.chain_1983,blat.proc3825148.chain_1984,blat.proc3825148.chain_1985	7
scaffold_13	alt_acceptor	16048993	16048994	+	asmbl_11546	none	STRG.16642.2	1	STRG.16642.1	1
scaffold_17	alt_donor	1508014	1508015	+	asmbl_18611	none	STRG.19990.1,Trinity_GG_28264_c0_g1_i1,blat.proc3825174.chain_875	3	STRG.19990.2,Trinity_GG_28264_c0_g1_i2,blat.proc3825174.chain_874	3
scaffold_10	skipped_exon	6705691	6706060	-	asmbl_4493	none	STRG.12500.2,blat.proc3825154.chain_1095	2	STRG.12500.1,blat.proc3825154.chain_1093,blat.proc3825154.chain_1094	3
scaffold_16	skipped_exon	8892270	8894669	+	asmbl_16449	none	STRG.19508.2	1	STRG.19508.1,Trinity_GG_27991_c0_g1_i1,blat.proc3825174.chain_420	3
scaffold_26	alt_donor	5523847	5523848	+	asmbl_35014	none	STRG.28262.4	1	STRG.28262.1	1
scaffold_3	retained_intron	19885239	19885401	-	asmbl_39670,asmbl_39673	none	Trinity_GG_2243_c1_g1_i6,blat.proc3825150.chain_247,blat.proc3825150.chain_249	3	STRG.4100.1,Trinity_GG_2243_c1_g1_i1,Trinity_GG_2243_c1_g1_i7,blat.proc3825150.chain_244,blat.proc3825150.chain_246	5
scaffold_39	ends_in_intron	34121	34121	-	asmbl_41070	none	Trinity_GG_16847_c0_g1_i4,blat.proc3825162.chain_3202	2	STRG.30041.1,STRG.30041.2,STRG.30041.3,blat.proc3825162.chain_3204	4
scaffold_10	alt_acceptor	17394055	17394056	+	asmbl_3773,asmbl_3774	none	STRG.13190.1,STRG.13190.3	2	STRG.13190.2	1
scaffold_6	retained_intron	8878330	8878408	-	asmbl_48598	none	blat.proc3825152.chain_150	1	STRG.7770.1,blat.proc3825152.chain_149	2
scaffold_17	retained_intron	9447461	9447558	+	asmbl_19087	none	Trinity_GG_28584_c0_g1_i2,blat.proc3825174.chain_1439	2	STRG.20569.1,Trinity_GG_28584_c0_g1_i3,Trinity_GG_28584_c0_g1_i4,blat.proc3825174.chain_1442,blat.proc3825174.chain_1443	5
scaffold_28	retained_exon	5361810	5361968	-	asmbl_38288	none	STRG.29685.1,Trinity_GG_16653_c0_g1_i1,blat.proc3825162.chain_2880	3	STRG.29685.2	1
scaffold_5	starts_in_intron	18248508	18248508	+	asmbl_46226	none	STRG.6960.4	1	STRG.6960.1,STRG.6960.2,STRG.6960.3,Trinity_GG_21136_c0_g1_i2,blat.proc3825166.chain_3160,blat.proc3825166.chain_3161,blat.proc3825166.chain_3162	7
scaffold_19	alternate_exon	5615562	5615641	-	asmbl_22173	none	STRG.22127.1,blat.proc3825158.chain_2966	2	STRG.22127.2	1
scaffold_18	alternate_exon	1752756	1752882	-	asmbl_19644	none	blat.proc3825158.chain_1950	1	STRG.21065.1,blat.proc3825158.chain_1948,blat.proc3825158.chain_1949	3
scaffold_1	alt_acceptor	12509533	12509534	-	asmbl_729	none	STRG.866.2	1	STRG.866.1,blat.proc3825148.chain_821	2
scaffold_13	alternate_exon	5507435	5507569	+	asmbl_10855	none	STRG.15845.4,Trinity_GG_25977_c0_g1_i3,blat.proc3825172.chain_513	3	STRG.15845.2,Trinity_GG_25977_c0_g1_i2,blat.proc3825172.chain_516	3
scaffold_10	spliced_intron	9546459	9546855	+	asmbl_3398	none	STRG.12711.4	1	Trinity_GG_24296_c1_g1_i1,blat.proc3825170.chain_1288	2
scaffold_20	retained_exon	9185157	9185236	+	asmbl_26842	none	blat.proc3825160.chain_533	1	STRG.23464.1,blat.proc3825176.chain_621	2
scaffold_5	alternate_exon	18823580	18829619	+	asmbl_46294,asmbl_46295	none	STRG.7012.1,STRG.7012.2,Trinity_GG_21167_c0_g1_i1,Trinity_GG_21167_c0_g1_i2,blat.proc3825166.chain_3224,blat.proc3825166.chain_3225	6	STRG.7012.3	1
scaffold_2	alt_donor	13072548	13072549	-	asmbl_23488,asmbl_23490,asmbl_23492,asmbl_23493,asmbl_23495	none	STRG.2337.1,STRG.2337.3,STRG.2337.4,blat.proc3825148.chain_2341,blat.proc3825148.chain_2342,blat.proc3825148.chain_2345	6	STRG.2337.2,STRG.2337.5,blat.proc3825148.chain_2340,blat.proc3825148.chain_2343	4
scaffold_15	alt_donor	1260909	1260910	+	asmbl_14996,asmbl_14998,asmbl_15000	none	STRG.17942.1,STRG.17942.2,Trinity_GG_27153_c0_g1_i1,blat.proc3825172.chain_2636,blat.proc3825172.chain_2637	5	STRG.17942.3,blat.proc3825172.chain_2635	2
scaffold_23	spliced_intron	6632661	6632755	+	asmbl_31634,asmbl_31636,asmbl_31637,asmbl_31639	none	STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2895,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897	5	STRG.26012.1,blat.proc3825176.chain_2898	2
scaffold_14	alt_acceptor	2501677	2501678	-	asmbl_12964	none	STRG.16861.2	1	STRG.16861.1,blat.proc3825156.chain_1680	2
scaffold_25	starts_in_intron	3293494	3293494	-	asmbl_34121	none	STRG.27284.5	1	STRG.27284.3,STRG.27284.6,STRG.27284.7,blat.proc3825162.chain_657,blat.proc3825162.chain_658	5
scaffold_17	retained_intron	793926	794149	+	asmbl_18575	none	blat.proc3825174.chain_823	1	STRG.19934.1,STRG.19934.2,STRG.19934.3	3
scaffold_18	retained_intron	7629659	7631669	-	asmbl_19961,asmbl_19965	none	STRG.21463.1,blat.proc3825158.chain_2394,blat.proc3825158.chain_2397	3	STRG.21463.4,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2396	3
scaffold_18	retained_exon	8401326	8401453	+	asmbl_20834,asmbl_20837,asmbl_20839	none	STRG.21513.3,STRG.21513.5,blat.proc3825174.chain_2581	3	STRG.21513.1,blat.proc3825174.chain_2580	2
scaffold_19	spliced_intron	9456754	9457176	+	asmbl_21593	none	Trinity_GG_29686_c1_g1_i4,blat.proc3825174.chain_3387	2	STRG.22377.3,Trinity_GG_29686_c1_g1_i3,blat.proc3825174.chain_3389	3
scaffold_1	skipped_exon	19695030	19696372	-	asmbl_1154,asmbl_1155	none	STRG.1358.2,blat.proc3825148.chain_1353	2	STRG.1358.1,blat.proc3825148.chain_1352	2
scaffold_22	spliced_intron	4287947	4288162	-	asmbl_29237,asmbl_29239,asmbl_29242	none	STRG.24854.1,STRG.24854.6,blat.proc3825160.chain_2083,blat.proc3825160.chain_2084	4	STRG.24854.5,blat.proc3825160.chain_2087	2
scaffold_4	alt_acceptor	14982191	14982192	+	asmbl_41918	none	STRG.5107.2	1	STRG.5107.1,blat.proc3825166.chain_1524	2
scaffold_10	ends_in_intron	922025	922025	+	asmbl_2880,asmbl_2883	none	STRG.11967.2,blat.proc3825170.chain_667	2	STRG.11967.1,blat.proc3825170.chain_665,blat.proc3825170.chain_666,blat.proc3825170.chain_668,blat.proc3825170.chain_669	5
scaffold_15	alt_acceptor	13847929	13847930	-	asmbl_14679	none	STRG.18815.2	1	STRG.18815.1	1
scaffold_1	starts_in_intron	45834	45834	-	asmbl_4	none	blat.proc3825148.chain_61	1	STRG.11.3,blat.proc3825148.chain_62	2
scaffold_4	alternate_exon	14105509	14105569	+	asmbl_41844	none	STRG.5030.2	1	STRG.5030.1	1
scaffold_26	alt_donor	9008981	9008982	-	asmbl_35756	none	STRG.28466.1,blat.proc3825162.chain_1677	2	STRG.28466.2	1
scaffold_8	spliced_intron	4081520	4081648	+	asmbl_52809,asmbl_52810,asmbl_52811	none	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2480,blat.proc3825168.chain_2481	4	blat.proc3825168.chain_2479	1
scaffold_12	skipped_exon	7958547	7958938	+	asmbl_7798,asmbl_7801	none	STRG.14861.2,STRG.14861.3,blat.proc3825170.chain_3358	3	STRG.14861.1,blat.proc3825170.chain_3356,blat.proc3825170.chain_3359	3
scaffold_14	alt_acceptor	6951268	6951269	-	asmbl_13168	none	STRG.17136.2,Trinity_GG_9576_c0_g1_i1,blat.proc3825156.chain_1883	3	STRG.17136.1	1
scaffold_10	starts_in_intron	635619	635619	-	asmbl_3977	none	STRG.11945.4	1	STRG.11945.1,blat.proc3825154.chain_484	2
scaffold_26	alternate_exon	3621038	3622429	+	asmbl_34801	none	STRG.28042.2,blat.proc3825178.chain_1087	2	STRG.28042.3	1
scaffold_5	starts_in_intron	3015956	3015956	-	asmbl_43905	none	blat.proc3825150.chain_2018	1	STRG.5805.1,blat.proc3825150.chain_2017	2
scaffold_25	alt_donor	2956352	2956353	-	asmbl_34075	none	STRG.27245.1,blat.proc3825162.chain_582	2	blat.proc3825162.chain_581	1
scaffold_25	spliced_intron	7905436	7905495	-	asmbl_34414	none	blat.proc3825162.chain_919	1	STRG.27617.1	1
scaffold_1	spliced_intron	5740198	5740435	+	asmbl_1775,asmbl_1776,asmbl_1778,asmbl_1779,asmbl_1780,asmbl_1781,asmbl_1782	none	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_525,blat.proc3825164.chain_526,blat.proc3825164.chain_528,blat.proc3825164.chain_529,blat.proc3825164.chain_530	7	blat.proc3825164.chain_524	1
scaffold_4	retained_intron	4094067	4094177	+	asmbl_41221,asmbl_41222	none	Trinity_GG_19675_c0_g1_i16,blat.proc3825166.chain_701,blat.proc3825166.chain_711	3	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,STRG.4315.5,Trinity_GG_19675_c0_g1_i17,blat.proc3825166.chain_704,blat.proc3825166.chain_707,blat.proc3825166.chain_708	9
scaffold_15	starts_in_intron	11053303	11053303	-	asmbl_14474	none	blat.proc3825156.chain_3434	1	STRG.18588.1,blat.proc3825156.chain_3433	2
scaffold_17	starts_in_intron	5693701	5693701	+	asmbl_18828	none	blat.proc3825174.chain_1117	1	STRG.20272.1,STRG.20272.3,Trinity_GG_28413_c0_g1_i1,blat.proc3825174.chain_1116	4
scaffold_18	alternate_exon	12403946	12404372	-	asmbl_20148	none	STRG.21708.2,blat.proc3825158.chain_2574	2	blat.proc3825158.chain_2573	1
scaffold_21	alt_acceptor	8278483	8278484	+	asmbl_28806	none	STRG.24368.3	1	STRG.24368.1,STRG.24368.2	2
scaffold_7	skipped_exon	3390194	3390921	-	asmbl_50790	none	STRG.8747.2	1	STRG.8747.1	1
scaffold_13	starts_in_intron	4590404	4590404	+	asmbl_10816	none	blat.proc3825172.chain_537	1	STRG.15787.1,Trinity_GG_25990_c0_g1_i2,blat.proc3825172.chain_536	3
scaffold_17	starts_in_intron	9752813	9752813	-	asmbl_18194	none	blat.proc3825158.chain_1529	1	STRG.20594.1,blat.proc3825158.chain_1527	2
scaffold_8	alternate_exon	9819257	9819333	+	asmbl_53112	none	STRG.10229.1,blat.proc3825168.chain_2784	2	STRG.10229.2,blat.proc3825168.chain_2785	2
scaffold_6	ends_in_intron	8937272	8937272	+	asmbl_47183,asmbl_47184	none	STRG.7773.1,STRG.7773.2,blat.proc3825168.chain_202,blat.proc3825168.chain_203	4	STRG.7773.3	1
scaffold_14	alt_acceptor	1111347	1111348	+	asmbl_11806	none	STRG.16770.2,blat.proc3825172.chain_1531	2	STRG.16770.3	1
scaffold_11	starts_in_intron	13301374	13301374	+	asmbl_6051	none	blat.proc3825170.chain_2740	1	STRG.14200.1,blat.proc3825170.chain_2741	2
scaffold_13	alternate_exon	15637931	15638003	+	asmbl_11521	none	STRG.16607.3	1	STRG.16607.1,blat.proc3825172.chain_1408	2
scaffold_23	alternate_exon	4100043	4100213	-	asmbl_30834	none	blat.proc3825160.chain_3029	1	STRG.25826.2	1
scaffold_19	alternate_exon	8808969	8815762	+	asmbl_21561,asmbl_21563	none	STRG.22335.1,STRG.22335.2,blat.proc3825174.chain_3343	3	STRG.22335.4	1
scaffold_27	skipped_exon	2829483	2832414	+	asmbl_36127	none	STRG.28768.1,blat.proc3825178.chain_1934	2	STRG.28768.2,STRG.28768.3,blat.proc3825178.chain_1932,blat.proc3825178.chain_1936	4
scaffold_14	spliced_intron	14545904	14546225	-	asmbl_13692	none	Trinity_GG_9966_c2_g1_i1,blat.proc3825156.chain_2562	2	STRG.17722.1,Trinity_GG_9966_c1_g1_i1,blat.proc3825156.chain_2561	3
scaffold_13	spliced_intron	517905	518487	+	asmbl_10486,asmbl_10489	none	STRG.15449.2,blat.proc3825172.chain_179,blat.proc3825172.chain_182	3	STRG.15449.1,blat.proc3825172.chain_188	2
scaffold_5	spliced_intron	3935675	3935871	+	asmbl_45260	none	blat.proc3825166.chain_2095	1	STRG.5863.1,Trinity_GG_20532_c0_g1_i3,blat.proc3825166.chain_2097	3
scaffold_14	spliced_intron	15831084	15831226	-	asmbl_13757	none	STRG.17828.2	1	blat.proc3825156.chain_2636	1
scaffold_12	alt_acceptor	135949	135950	+	asmbl_7435,asmbl_7436	none	blat.proc3825170.chain_2984,blat.proc3825170.chain_2985	2	STRG.14431.2,STRG.14431.3	2
scaffold_18	alternate_exon	4071478	4071655	-	asmbl_19790	none	STRG.21204.3	1	STRG.21204.1	1
scaffold_18	retained_intron	1895347	1896928	-	asmbl_19653,asmbl_19655,asmbl_19656,asmbl_19657,asmbl_19658,asmbl_19661,asmbl_19662,asmbl_19663,asmbl_19665	none	STRG.21081.10,STRG.21081.3,STRG.21081.8,STRG.21081.9,blat.proc3825158.chain_2010,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2018	10	blat.proc3825158.chain_2011,blat.proc3825158.chain_2017	2
scaffold_12	alt_acceptor	3106226	3106227	+	asmbl_7545	none	STRG.14551.1	1	STRG.14551.2	1
scaffold_10	starts_in_intron	3930373	3930373	-	asmbl_4245	none	blat.proc3825154.chain_802	1	STRG.12235.1,blat.proc3825154.chain_797,blat.proc3825154.chain_801	3
scaffold_5	spliced_intron	15044032	15044157	-	asmbl_44637	none	STRG.6698.5	1	Trinity_GG_3732_c0_g1_i1,blat.proc3825150.chain_2826	2
scaffold_7	skipped_exon	689261	689739	+	asmbl_49557,asmbl_49558	none	STRG.8604.3,STRG.8604.4	2	STRG.8604.1,blat.proc3825168.chain_1104	2
scaffold_11	alt_donor	11936632	11936633	-	asmbl_7044	none	STRG.14177.4	1	STRG.14177.2,STRG.14177.3	2
scaffold_18	retained_intron	1499817	1499941	+	asmbl_20355,asmbl_20356	none	Trinity_GG_28824_c0_g1_i2,blat.proc3825174.chain_1849,blat.proc3825174.chain_1850	3	STRG.21034.1,Trinity_GG_28824_c0_g1_i1,blat.proc3825174.chain_1851	3
scaffold_24	retained_intron	5939387	5939564	+	asmbl_32256,asmbl_32263,asmbl_32265	none	Trinity_GG_32084_c0_g1_i19,blat.proc3825176.chain_3666,blat.proc3825176.chain_3668,blat.proc3825176.chain_3669	4	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3667,blat.proc3825176.chain_3671,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3676,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3681	13
scaffold_2	alternate_exon	9866618	9869089	-	asmbl_23398	none	STRG.2191.1,blat.proc3825148.chain_2187,blat.proc3825148.chain_2189	3	STRG.2191.2	1
scaffold_28	alt_donor	6515533	6515534	-	asmbl_38347	none	STRG.29749.2	1	blat.proc3825162.chain_2874	1
scaffold_3	starts_in_intron	8168126	8168126	-	asmbl_39013	none	blat.proc3825148.chain_3279	1	STRG.3440.1,blat.proc3825148.chain_3270,blat.proc3825148.chain_3276,blat.proc3825148.chain_3277	4
scaffold_21	alt_donor	6614548	6614549	-	asmbl_27737	none	STRG.24186.3	1	STRG.24186.2,blat.proc3825160.chain_1337	2
scaffold_16	ends_in_intron	4137496	4137496	-	asmbl_17053	none	STRG.19229.6	1	STRG.19229.2,STRG.19229.4,blat.proc3825158.chain_421,blat.proc3825158.chain_423	4
scaffold_22	alternate_exon	11477475	11477601	+	asmbl_30393	none	STRG.25495.2,Trinity_GG_31379_c0_g1_i3,blat.proc3825176.chain_2479	3	STRG.25495.3,Trinity_GG_31379_c0_g1_i2,Trinity_GG_31379_c0_g1_i4,blat.proc3825176.chain_2476,blat.proc3825176.chain_2478	5
scaffold_10	starts_in_intron	13633274	13633274	-	asmbl_4920	none	blat.proc3825154.chain_1589	1	STRG.12964.1,blat.proc3825154.chain_1590	2
scaffold_6	alternate_exon	14513619	14513941	-	asmbl_49012	none	STRG.8219.1,blat.proc3825152.chain_633	2	STRG.8219.2	1
scaffold_3	ends_in_intron	3240725	3240725	+	asmbl_39937	none	blat.proc3825164.chain_3374	1	STRG.3072.2,STRG.3072.3,blat.proc3825164.chain_3376	3
scaffold_10	alt_acceptor	3065795	3065796	-	asmbl_4157	none	STRG.12130.1,blat.proc3825154.chain_664	2	STRG.12130.2,blat.proc3825154.chain_662,blat.proc3825154.chain_663	3
scaffold_15	ends_in_intron	2071754	2071754	-	asmbl_13986,asmbl_13987	none	STRG.18002.3,Trinity_GG_10107_c0_g1_i4,blat.proc3825156.chain_2792,blat.proc3825156.chain_2794	4	STRG.18002.1,STRG.18002.2	2
scaffold_14	retained_intron	15565742	15565795	+	asmbl_12619,asmbl_12623,asmbl_12624,asmbl_12625	none	STRG.17796.1,STRG.17796.3,blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	5	STRG.17796.2	1
scaffold_18	retained_exon	1754139	1754256	-	asmbl_19642,asmbl_19644	none	STRG.21065.1,blat.proc3825158.chain_1948,blat.proc3825158.chain_1950	3	blat.proc3825158.chain_1949	1
scaffold_26	retained_intron	5954384	5954477	-	asmbl_35655	none	blat.proc3825162.chain_1519	1	STRG.28307.1,STRG.28307.2,blat.proc3825162.chain_1520	3
scaffold_1	alt_donor	22133297	22133298	+	asmbl_2685	none	STRG.1487.2	1	STRG.1487.3,Trinity_GG_18164_c1_g1_i1,blat.proc3825164.chain_1616	3
scaffold_8	spliced_intron	11846516	11848424	+	asmbl_53283,asmbl_53284	none	blat.proc3825168.chain_3020,blat.proc3825168.chain_3023	2	STRG.10390.2,STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3016,blat.proc3825168.chain_3019,blat.proc3825168.chain_3022,blat.proc3825168.chain_3027	8
scaffold_15	ends_in_intron	9685818	9685818	-	asmbl_14402	none	Trinity_GG_10342_c0_g1_i4,blat.proc3825156.chain_3234	2	STRG.18484.1,blat.proc3825156.chain_3233	2
scaffold_6	spliced_intron	14512780	14513103	-	asmbl_49013	none	STRG.8219.2	1	Trinity_GG_4661_c0_g1_i2,blat.proc3825152.chain_634	2
scaffold_14	spliced_intron	9273611	9273885	-	asmbl_13360,asmbl_13362,asmbl_13366	none	STRG.17338.1,STRG.17338.3,blat.proc3825156.chain_2201,blat.proc3825156.chain_2202,blat.proc3825156.chain_2204	5	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203	2
scaffold_10	alternate_exon	635414	635702	-	asmbl_3973	none	STRG.11945.2,blat.proc3825154.chain_483	2	STRG.11945.1,blat.proc3825154.chain_484	2
scaffold_17	retained_intron	538675	539184	+	asmbl_18544,asmbl_18547	none	STRG.19902.3,blat.proc3825174.chain_784,blat.proc3825174.chain_786	3	STRG.19902.2	1
scaffold_10	spliced_intron	5857032	5858338	-	asmbl_4398,asmbl_4400,asmbl_4401	none	STRG.12409.1,STRG.12409.2,STRG.12409.3,blat.proc3825154.chain_985	4	Trinity_GG_6938_c0_g1_i1,Trinity_GG_6938_c0_g2_i1,blat.proc3825154.chain_981,blat.proc3825154.chain_984	4
scaffold_1	retained_exon	6283604	6283664	-	asmbl_335,asmbl_341,asmbl_344,asmbl_346	none	STRG.423.1,STRG.423.3,blat.proc3825148.chain_414,blat.proc3825148.chain_418	4	STRG.423.2,blat.proc3825148.chain_410,blat.proc3825148.chain_411	3
scaffold_17	alt_donor	11959884	11959885	-	asmbl_18303,asmbl_18306	none	STRG.20722.3,STRG.20722.5,blat.proc3825158.chain_1749	3	STRG.20722.2,blat.proc3825158.chain_1752	2
scaffold_7	retained_intron	1235897	1236477	+	asmbl_49602	none	STRG.8637.2	1	Trinity_GG_22033_c0_g1_i15	1
scaffold_19	retained_intron	12958865	12958948	-	asmbl_22566	none	Trinity_GG_12582_c0_g1_i6,blat.proc3825158.chain_3404	2	STRG.22612.1,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402	3
scaffold_5	retained_exon	16519193	16519220	-	asmbl_44749,asmbl_44752	none	STRG.6842.2,STRG.6842.4,blat.proc3825150.chain_3015	3	STRG.6842.1,blat.proc3825150.chain_3017	2
scaffold_15	starts_in_intron	12391442	12391442	-	asmbl_14570,asmbl_14571	none	blat.proc3825156.chain_3513,blat.proc3825156.chain_3520	2	STRG.18695.2,STRG.18695.3	2
scaffold_6	alternate_exon	13228725	13229075	+	asmbl_47505	none	blat.proc3825168.chain_574	1	STRG.8084.6,STRG.8084.7,blat.proc3825168.chain_577	3
scaffold_18	starts_in_intron	2834126	2834126	+	asmbl_20426	none	Trinity_GG_28933_c0_g1_i5,blat.proc3825174.chain_2054	2	STRG.21142.1,STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2056	4
scaffold_17	retained_exon	7849832	7849895	+	asmbl_18924	none	STRG.20411.1	1	STRG.20411.3	1
scaffold_9	retained_intron	3673495	3673823	-	asmbl_54919	none	Trinity_GG_6077_c0_g1_i7,Trinity_GG_6077_c2_g1_i1,blat.proc3825152.chain_3214,blat.proc3825152.chain_3223	4	STRG.10993.1,STRG.10993.2,STRG.10993.4,STRG.10993.5,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	8
scaffold_4	retained_intron	17580414	17580544	+	asmbl_42063	none	STRG.5347.4	1	STRG.5347.3	1
scaffold_5	alternate_exon	4696210	4697372	+	asmbl_45285,asmbl_45286,asmbl_45287,asmbl_45289,asmbl_45290	none	STRG.5925.1,STRG.5925.2,STRG.5925.3,blat.proc3825166.chain_2149,blat.proc3825166.chain_2150	5	STRG.5925.4	1
scaffold_19	starts_in_intron	12194371	12194371	-	asmbl_22464	none	Trinity_GG_12483_c0_g1_i4,blat.proc3825158.chain_3194	2	STRG.22548.1,Trinity_GG_12483_c0_g1_i2,blat.proc3825158.chain_3195	3
scaffold_11	retained_exon	6614791	6614888	-	asmbl_6728	none	STRG.13704.1,blat.proc3825154.chain_2261	2	STRG.13704.2,blat.proc3825154.chain_2260	2
scaffold_13	retained_exon	6048623	6048724	-	asmbl_9763,asmbl_9766	none	STRG.15915.1,STRG.15915.5,blat.proc3825156.chain_778,blat.proc3825156.chain_782	4	STRG.15915.4,blat.proc3825156.chain_784	2
scaffold_13	alternate_exon	11600010	11603286	+	asmbl_11289,asmbl_11292	none	STRG.16316.1,STRG.16316.3	2	STRG.16316.4,STRG.16316.5,STRG.16316.6	3
scaffold_19	starts_in_intron	5463084	5463084	+	asmbl_21376	none	STRG.22117.4	1	STRG.22117.1,blat.proc3825174.chain_3157,blat.proc3825174.chain_3160	3
scaffold_10	alternate_exon	13646135	13646401	-	asmbl_4922	none	STRG.12965.1,blat.proc3825154.chain_1595	2	blat.proc3825154.chain_1596	1
scaffold_14	retained_intron	9272764	9273885	-	asmbl_13365,asmbl_13367	none	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203	2	STRG.17338.4	1
scaffold_3	retained_intron	10302177	10302270	+	asmbl_40266	none	Trinity_GG_19250_c1_g1_i5,blat.proc3825164.chain_3701	2	Trinity_GG_19250_c1_g1_i3,blat.proc3825164.chain_3698	2
scaffold_5	ends_in_intron	6565368	6565368	+	asmbl_45434	none	blat.proc3825166.chain_2219	1	STRG.6054.1,STRG.6054.2,blat.proc3825166.chain_2217	3
scaffold_8	ends_in_intron	4961685	4961685	-	asmbl_51821	none	Trinity_GG_5545_c2_g1_i1,blat.proc3825152.chain_2202	2	STRG.9966.1,blat.proc3825152.chain_2197,blat.proc3825152.chain_2198	3
scaffold_21	retained_exon	11671525	11671560	-	asmbl_28139	none	STRG.24631.1	1	STRG.24631.2,blat.proc3825160.chain_1841	2
scaffold_5	alternate_exon	60973	63191	+	asmbl_45063	none	STRG.5566.1,blat.proc3825166.chain_1865	2	blat.proc3825166.chain_1864	1
scaffold_11	ends_in_intron	11940109	11940109	-	asmbl_7045	none	Trinity_GG_7854_c11_g1_i1,blat.proc3825154.chain_2604	2	STRG.14177.3,STRG.14177.4	2
scaffold_16	ends_in_intron	5969554	5969554	+	asmbl_16255	none	Trinity_GG_27886_c0_g1_i2,blat.proc3825174.chain_220	2	STRG.19330.1,Trinity_GG_27886_c0_g1_i3,blat.proc3825174.chain_221,blat.proc3825174.chain_222	4
scaffold_23	alt_donor	7006308	7006309	-	asmbl_31004,asmbl_31006,asmbl_31008	none	STRG.26025.3,STRG.26025.4,STRG.26025.5,blat.proc3825160.chain_3123	4	STRG.26025.2	1
scaffold_16	alt_donor	6144352	6144353	+	asmbl_16278,asmbl_16279,asmbl_16280,asmbl_16281	none	STRG.19354.2,blat.proc3825174.chain_141,blat.proc3825174.chain_143,blat.proc3825174.chain_144,blat.proc3825174.chain_145	5	STRG.19354.4	1
scaffold_5	alternate_exon	19274911	19275250	+	asmbl_46314	none	STRG.7028.4	1	STRG.7028.1,Trinity_GG_21182_c0_g1_i4,blat.proc3825166.chain_3243	3
scaffold_11	retained_intron	7049528	7049788	+	asmbl_5645	none	Trinity_GG_24878_c0_g1_i6,blat.proc3825170.chain_2271	2	STRG.13733.2,STRG.13733.3,STRG.13733.5,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2273	7
scaffold_14	alt_donor	15468065	15468066	+	asmbl_12598	none	STRG.17780.4	1	STRG.17780.2	1
scaffold_22	alt_donor	7437761	7437762	-	asmbl_29399,asmbl_29400,asmbl_29402	none	STRG.25084.1,STRG.25084.3,STRG.25084.4,blat.proc3825160.chain_2245,blat.proc3825160.chain_2247	5	STRG.25084.2,STRG.25084.5,blat.proc3825160.chain_2246,blat.proc3825160.chain_2248	4
scaffold_2	retained_exon	9160014	9160085	+	asmbl_24672	none	STRG.2164.2	1	STRG.2164.1,Trinity_GG_18534_c0_g1_i1,Trinity_GG_18534_c0_g1_i2,blat.proc3825164.chain_2350,blat.proc3825164.chain_2351	5
scaffold_7	spliced_intron	12412680	12412840	+	asmbl_50258	none	STRG.9345.1,Trinity_GG_22499_c0_g1_i2,blat.proc3825168.chain_1868	3	Trinity_GG_22499_c0_g1_i1,blat.proc3825168.chain_1869	2
scaffold_11	alternate_exon	3768626	3784007	-	asmbl_6576	none	STRG.13508.3	1	STRG.13508.2	1
scaffold_1	alternate_exon	849738	850698	+	asmbl_1422	none	STRG.42.4	1	STRG.42.1,Trinity_GG_17343_c0_g1_i2,blat.proc3825164.chain_125	3
scaffold_2	skipped_exon	6899167	6900291	+	asmbl_24510,asmbl_24513,asmbl_24514,asmbl_24515,asmbl_24516	none	STRG.2036.1,STRG.2036.2,STRG.2036.3,STRG.2036.4,blat.proc3825164.chain_2155,blat.proc3825164.chain_2160	6	blat.proc3825164.chain_2156,blat.proc3825164.chain_2158	2
scaffold_5	retained_intron	8119952	8121390	-	asmbl_44198	none	STRG.6175.1,blat.proc3825150.chain_2370	2	STRG.6175.2,blat.proc3825150.chain_2369	2
scaffold_18	spliced_intron	377007	377116	-	asmbl_19575,asmbl_19583	none	STRG.20990.1,blat.proc3825158.chain_1986,blat.proc3825158.chain_1989	3	blat.proc3825158.chain_1990	1
scaffold_8	alt_donor	11463997	11463998	+	asmbl_53228	none	STRG.10352.2	1	STRG.10352.3,blat.proc3825168.chain_2931	2
scaffold_21	spliced_intron	1151006	1151165	+	asmbl_28328	none	STRG.23790.2,Trinity_GG_30494_c0_g1_i2,blat.proc3825176.chain_1008	3	STRG.23790.1,blat.proc3825176.chain_1009	2
scaffold_9	retained_intron	6290195	6290500	+	asmbl_54086	none	STRG.11166.2,blat.proc3825168.chain_3665	2	STRG.11166.1,blat.proc3825168.chain_3666	2
scaffold_22	alt_acceptor	4592865	4592866	-	asmbl_29270,asmbl_29272	none	STRG.24892.1,blat.proc3825160.chain_2058,blat.proc3825160.chain_2060	3	STRG.24892.2,blat.proc3825160.chain_2059	2
scaffold_14	alternate_exon	1604562	1604655	-	asmbl_12904	none	STRG.16803.2,Trinity_GG_9375_c0_g1_i2,blat.proc3825156.chain_1576	3	STRG.16803.1,Trinity_GG_9375_c0_g1_i1,Trinity_GG_9375_c0_g1_i3,blat.proc3825156.chain_1573,blat.proc3825156.chain_1574	5
scaffold_8	retained_intron	11850111	11850658	+	asmbl_53277,asmbl_53292,asmbl_53293	none	STRG.10390.2,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021	3	STRG.10390.4,blat.proc3825168.chain_3016,blat.proc3825168.chain_3025	3
scaffold_23	alt_acceptor	5581100	5581101	+	asmbl_31580	none	STRG.25933.5,blat.proc3825176.chain_2841	2	STRG.25933.1,STRG.25933.2,STRG.25933.3,blat.proc3825176.chain_2834,blat.proc3825176.chain_2835,blat.proc3825176.chain_2837,blat.proc3825176.chain_2838,blat.proc3825176.chain_2839,blat.proc3825176.chain_2840	9
scaffold_22	starts_in_intron	1006179	1006179	+	asmbl_29917	none	blat.proc3825176.chain_1856	1	STRG.24754.2,STRG.24754.3,Trinity_GG_30985_c0_g1_i9,blat.proc3825176.chain_1858,blat.proc3825176.chain_1859,blat.proc3825176.chain_1860,blat.proc3825176.chain_1861	7
scaffold_23	alternate_exon	6848696	6859372	-	asmbl_30983	none	STRG.26018.3,Trinity_GG_14559_c0_g1_i1,Trinity_GG_14570_c1_g1_i1,blat.proc3825160.chain_3177,blat.proc3825160.chain_3206	5	STRG.26018.4,blat.proc3825160.chain_3207	2
scaffold_22	starts_in_intron	761534	761534	+	asmbl_29891	none	Trinity_GG_30987_c0_g1_i2,blat.proc3825176.chain_1864	2	STRG.24731.1,STRG.24731.2,Trinity_GG_30987_c0_g1_i1,blat.proc3825176.chain_1865	4
scaffold_19	alt_donor	6663729	6663730	+	asmbl_21427	none	STRG.22181.2	1	STRG.22181.1,blat.proc3825174.chain_3190	2
scaffold_14	starts_in_intron	149694	149694	-	asmbl_12776	none	STRG.16711.1,blat.proc3825156.chain_1522	2	STRG.16711.2,blat.proc3825156.chain_1518	2
scaffold_28	ends_in_intron	3818058	3818058	-	asmbl_38177	none	blat.proc3825162.chain_2745	1	STRG.29582.1,STRG.29582.3,blat.proc3825162.chain_2742,blat.proc3825162.chain_2743,blat.proc3825162.chain_2744	5
scaffold_22	retained_exon	230897	230930	-	asmbl_29077,asmbl_29081	none	STRG.24683.5,blat.proc3825160.chain_1905	2	STRG.24683.1,STRG.24683.4,blat.proc3825160.chain_1903,blat.proc3825160.chain_1904	4
scaffold_25	alt_acceptor	5831276	5831277	-	asmbl_34287	none	STRG.27479.4	1	STRG.27479.1,STRG.27479.2,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_880	5
scaffold_27	retained_intron	2998993	2999967	+	asmbl_36152,asmbl_36157	none	blat.proc3825178.chain_1902,blat.proc3825178.chain_1904	2	STRG.28786.1,STRG.28786.2,STRG.28786.3,STRG.28786.4,STRG.28786.5,blat.proc3825178.chain_1903,blat.proc3825178.chain_1906,blat.proc3825178.chain_1907	8
scaffold_10	starts_in_intron	16478333	16478333	+	asmbl_3714	none	blat.proc3825170.chain_1644	1	STRG.13120.1,blat.proc3825170.chain_1643	2
scaffold_1	retained_intron	5645145	5645265	+	asmbl_1739,asmbl_1740,asmbl_1742	none	STRG.360.1,STRG.360.3,STRG.360.5,blat.proc3825164.chain_425,blat.proc3825164.chain_428	5	STRG.360.2,STRG.360.4,blat.proc3825164.chain_424,blat.proc3825164.chain_426	4
scaffold_18	spliced_intron	7629659	7631669	-	asmbl_19962,asmbl_19967	none	STRG.21463.4,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2396	3	STRG.21463.1,blat.proc3825158.chain_2394,blat.proc3825158.chain_2397	3
scaffold_15	retained_intron	15906565	15906850	-	asmbl_14812,asmbl_14814	none	blat.proc3825158.chain_65,blat.proc3825158.chain_67	2	STRG.18975.2,blat.proc3825158.chain_66	2
scaffold_16	ends_in_intron	8649450	8649450	+	asmbl_16441	none	blat.proc3825174.chain_419	1	STRG.19493.1,STRG.19493.2,STRG.19493.3,blat.proc3825174.chain_411,blat.proc3825174.chain_414,blat.proc3825174.chain_415	6
scaffold_9	spliced_intron	2808854	2809003	-	asmbl_54888	none	blat.proc3825152.chain_3167	1	STRG.10923.1,STRG.10923.3,Trinity_GG_6059_c0_g2_i3,blat.proc3825152.chain_3168	4
scaffold_3	ends_in_intron	15929239	15929239	-	asmbl_39458	none	Trinity_GG_2083_c0_g1_i4,blat.proc3825148.chain_3696	2	STRG.3873.1,blat.proc3825148.chain_3693,blat.proc3825148.chain_3697	3
scaffold_25	alt_donor	7324105	7324106	-	asmbl_34397	none	STRG.27581.2	1	STRG.27581.1,STRG.27581.4,blat.proc3825178.chain_653	3
scaffold_8	alt_acceptor	9374720	9374721	-	asmbl_52025,asmbl_52026,asmbl_52028,asmbl_52030,asmbl_52032	none	STRG.10202.3,STRG.10202.4,STRG.10202.5,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463,blat.proc3825152.chain_2464	6	STRG.10202.6	1
scaffold_3	retained_exon	13424514	13424799	-	asmbl_39263	none	blat.proc3825148.chain_3590	1	STRG.3693.2,blat.proc3825148.chain_3583	2
scaffold_13	alt_donor	15672427	15672428	+	asmbl_11527	none	STRG.16612.2	1	STRG.16612.1,STRG.16612.3,STRG.16612.5,STRG.16612.6	4
scaffold_12	starts_in_intron	3970372	3970372	-	asmbl_8379	none	STRG.14594.1	1	STRG.14594.2,blat.proc3825154.chain_3032	2
scaffold_506	starts_in_intron	4346	4346	+	asmbl_46507	none	Trinity_GG_34114_c0_g1_i3,blat.proc3825178.chain_3452	2	STRG.30354.1,STRG.30354.2,blat.proc3825178.chain_3450,blat.proc3825178.chain_3451,blat.proc3825178.chain_3453,blat.proc3825178.chain_3454	6
scaffold_6	alt_acceptor	14087942	14087943	+	asmbl_47573	none	STRG.8175.1,blat.proc3825168.chain_605,blat.proc3825168.chain_607	3	STRG.8175.2	1
scaffold_9	spliced_intron	13319452	13319594	-	asmbl_55439	none	STRG.11634.3,blat.proc3825154.chain_18	2	STRG.11634.2,blat.proc3825154.chain_17	2
scaffold_22	ends_in_intron	11473409	11473409	+	asmbl_30391	none	Trinity_GG_31348_c0_g1_i3	1	STRG.25490.1,Trinity_GG_31348_c0_g1_i2,blat.proc3825176.chain_2427	3
scaffold_4	starts_in_intron	17573289	17573289	-	asmbl_43284	none	STRG.5346.3,blat.proc3825150.chain_1511	2	STRG.5346.1	1
scaffold_3	retained_exon	17366415	17366491	-	asmbl_39547,asmbl_39550,asmbl_39552,asmbl_39555,asmbl_39556	none	STRG.3971.1,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_179,blat.proc3825150.chain_182,blat.proc3825150.chain_183	6	STRG.3971.2,blat.proc3825150.chain_177,blat.proc3825150.chain_181	3
scaffold_17	retained_exon	3675	3812	+	asmbl_18532	none	STRG.19887.2,Trinity_GG_28200_c0_g1_i1,blat.proc3825174.chain_773	3	STRG.19887.1,Trinity_GG_28200_c0_g1_i2,blat.proc3825174.chain_774	3
scaffold_23	spliced_intron	248951	249926	-	asmbl_30571	none	STRG.25548.3,blat.proc3825160.chain_2705	2	STRG.25548.1,blat.proc3825160.chain_2704	2
scaffold_11	alt_donor	1606333	1606334	-	asmbl_6443	none	STRG.13339.1	1	STRG.13339.2	1
scaffold_9	skipped_exon	4203935	4206879	+	asmbl_53942	none	STRG.11024.2	1	STRG.11024.3	1
scaffold_9	retained_exon	9707266	9707334	+	asmbl_54236	none	STRG.11349.2,blat.proc3825170.chain_143	2	Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_146	2
scaffold_24	retained_intron	9119810	9119908	+	asmbl_32507,asmbl_32508	none	Trinity_GG_32221_c0_g1_i2,Trinity_GG_32221_c0_g1_i9,blat.proc3825178.chain_171,blat.proc3825178.chain_174	4	Trinity_GG_32221_c0_g1_i8,blat.proc3825178.chain_170	2
scaffold_15	retained_exon	15409904	15409992	+	asmbl_15769,asmbl_15770,asmbl_15774	none	STRG.18930.1,STRG.18930.2,STRG.18930.9,blat.proc3825172.chain_3588,blat.proc3825172.chain_3590	5	STRG.18930.10,STRG.18930.3,STRG.18930.6,blat.proc3825172.chain_3586,blat.proc3825172.chain_3589	5
scaffold_8	retained_intron	11850678	11850826	+	asmbl_53277,asmbl_53292,asmbl_53293	none	STRG.10390.2,blat.proc3825168.chain_3018,blat.proc3825168.chain_3021	3	STRG.10390.3,STRG.10390.4,STRG.10390.5,blat.proc3825168.chain_3016,blat.proc3825168.chain_3019,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022,blat.proc3825168.chain_3023,blat.proc3825168.chain_3025,blat.proc3825168.chain_3027	10
scaffold_4	spliced_intron	4414352	4414502	+	asmbl_41245,asmbl_41260	none	STRG.4349.4,blat.proc3825166.chain_844	2	STRG.4349.2,Trinity_GG_19749_c0_g1_i11,blat.proc3825166.chain_840,blat.proc3825166.chain_841	4
scaffold_5	retained_intron	14263100	14263469	+	asmbl_45918,asmbl_45919,asmbl_45923	none	blat.proc3825166.chain_2789,blat.proc3825166.chain_2790,blat.proc3825166.chain_2791	3	STRG.6638.1,STRG.6638.3,STRG.6638.4,blat.proc3825166.chain_2786,blat.proc3825166.chain_2788,blat.proc3825166.chain_2792	6
scaffold_10	alt_acceptor	6413088	6413089	-	asmbl_4451	none	STRG.12469.1	1	blat.proc3825154.chain_1025	1
scaffold_8	retained_exon	9129085	9129248	-	asmbl_52008	none	STRG.10172.1	1	STRG.10172.3,STRG.10172.4	2
scaffold_15	spliced_intron	15906877	15906998	-	asmbl_14813	none	blat.proc3825158.chain_66	1	STRG.18975.2,blat.proc3825158.chain_65,blat.proc3825158.chain_67	3
scaffold_19	retained_exon	13157726	13157873	+	asmbl_21858	none	STRG.22640.2,Trinity_GG_29825_c0_g1_i1,blat.proc3825174.chain_3663	3	STRG.22640.1	1
scaffold_21	alt_donor	6988488	6988489	-	asmbl_27768	none	STRG.24228.2,blat.proc3825160.chain_1367	2	STRG.24228.1,blat.proc3825160.chain_1369	2
scaffold_8	starts_in_intron	11811978	11811978	+	asmbl_53267	none	Trinity_GG_23114_c0_g1_i2,blat.proc3825168.chain_2985	2	STRG.10386.1,blat.proc3825168.chain_2986,blat.proc3825168.chain_2987	3
scaffold_9	alternate_exon	4204204	4204343	+	asmbl_53940	none	STRG.11024.4,blat.proc3825168.chain_3484	2	STRG.11024.3	1
scaffold_6	retained_intron	16876680	16877084	-	asmbl_49171	none	STRG.8405.1,blat.proc3825152.chain_873	2	STRG.8405.3,blat.proc3825152.chain_871	2
scaffold_13	ends_in_intron	914789	914789	-	asmbl_9387	none	STRG.15466.2,blat.proc3825156.chain_322	2	STRG.15466.1,blat.proc3825156.chain_321	2
scaffold_28	alt_acceptor	3815601	3815602	-	asmbl_38176	none	STRG.29582.3	1	STRG.29582.1,blat.proc3825162.chain_2742,blat.proc3825162.chain_2743,blat.proc3825162.chain_2744	4
scaffold_28	alt_acceptor	2811349	2811350	-	asmbl_38086	none	STRG.29471.2	1	STRG.29471.1,blat.proc3825162.chain_2599	2
scaffold_24	alt_donor	4836685	4836686	+	asmbl_32206	none	STRG.26613.1,blat.proc3825176.chain_3523	2	blat.proc3825176.chain_3524	1
scaffold_10	skipped_exon	7270639	7271459	+	asmbl_3270	none	STRG.12540.2,blat.proc3825170.chain_1147	2	STRG.12540.1,blat.proc3825170.chain_1145,blat.proc3825170.chain_1146,blat.proc3825170.chain_1149	4
scaffold_2	alt_donor	14643353	14643354	+	asmbl_24966	none	STRG.2460.2	1	STRG.2460.1	1
scaffold_5	retained_exon	18819599	18819678	+	asmbl_46291	none	STRG.7010.1,blat.proc3825166.chain_3170	2	STRG.7010.2,STRG.7010.3	2
scaffold_12	alt_donor	14882020	14882021	+	asmbl_8092	none	STRG.15273.2	1	STRG.15273.1,STRG.15273.3,blat.proc3825170.chain_3713	3
scaffold_11	retained_intron	3110813	3110881	-	asmbl_6529	none	STRG.13443.1,blat.proc3825154.chain_1984	2	STRG.13443.2,blat.proc3825154.chain_1983	2
scaffold_15	retained_exon	15188654	15189219	+	asmbl_15725,asmbl_15735,asmbl_15740	none	STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3536	5	blat.proc3825172.chain_3530	1
scaffold_9	alt_acceptor	377021	377022	+	asmbl_53759	none	Trinity_GG_23285_c0_g1_i1	1	STRG.10774.1,blat.proc3825168.chain_3298	2
scaffold_15	skipped_exon	14510889	14513245	+	asmbl_15684	none	STRG.18865.1,blat.proc3825172.chain_3489	2	STRG.18865.2,STRG.18865.3,blat.proc3825172.chain_3487,blat.proc3825172.chain_3488	4
scaffold_12	spliced_intron	12307824	12309134	+	asmbl_7985	none	STRG.15133.4,blat.proc3825170.chain_3641	2	STRG.15133.3,Trinity_GG_25650_c0_g1_i1,blat.proc3825170.chain_3642	3
scaffold_2	retained_intron	950492	950626	+	asmbl_24169	none	Trinity_GG_18238_c0_g1_i8	1	STRG.1574.4	1
scaffold_20	skipped_exon	10671068	10671939	+	asmbl_26981	none	STRG.23604.2	1	STRG.23604.1,blat.proc3825176.chain_785,blat.proc3825176.chain_786	3
scaffold_1	spliced_intron	11269937	11270054	+	asmbl_2092	none	STRG.746.2	1	STRG.746.3	1
scaffold_11	alt_donor	3497550	3497551	+	asmbl_5439,asmbl_5441	none	STRG.13484.2,blat.proc3825170.chain_2033	2	blat.proc3825170.chain_2034	1
scaffold_1	ends_in_intron	12756869	12756869	-	asmbl_760	none	STRG.897.2	1	STRG.897.1,blat.proc3825148.chain_843	2
scaffold_8	retained_intron	14134155	14134355	-	asmbl_52295	none	STRG.10519.3,blat.proc3825152.chain_2761	2	STRG.10519.1,STRG.10519.2	2
scaffold_5	alt_acceptor	9704095	9704096	-	asmbl_44294,asmbl_44295,asmbl_44299	none	STRG.6293.4,blat.proc3825150.chain_2497,blat.proc3825150.chain_2502,blat.proc3825150.chain_2503,blat.proc3825150.chain_2505	5	STRG.6293.2,blat.proc3825150.chain_2499	2
scaffold_2	alternate_exon	18714932	18719947	+	asmbl_25237	none	STRG.2752.2	1	blat.proc3825164.chain_3011	1
scaffold_19	starts_in_intron	11169120	11169120	+	asmbl_21672	none	blat.proc3825174.chain_3412	1	STRG.22450.1,blat.proc3825174.chain_3410,blat.proc3825174.chain_3411	3
scaffold_5	alt_donor	6278291	6278292	-	asmbl_44086,asmbl_44088	none	STRG.6037.1,blat.proc3825150.chain_2242,blat.proc3825150.chain_2244	3	STRG.6037.2	1
scaffold_6	spliced_intron	19076979	19077208	+	asmbl_47869,asmbl_47872	none	STRG.8575.2,Trinity_GG_21983_c0_g1_i4,Trinity_GG_21983_c0_g1_i5,blat.proc3825168.chain_949,blat.proc3825168.chain_950	5	STRG.8575.3,Trinity_GG_21983_c2_g1_i1,blat.proc3825168.chain_954	3
scaffold_18	alt_acceptor	9170107	9170108	+	asmbl_20880	none	Trinity_GG_29198_c0_g1_i1,blat.proc3825174.chain_2558	2	STRG.21559.2,STRG.21559.3,Trinity_GG_29198_c0_g1_i2,blat.proc3825174.chain_2557	4
scaffold_24	alt_donor	1064662	1064663	+	asmbl_32065	none	STRG.26380.5	1	STRG.26380.3,Trinity_GG_31903_c0_g1_i3,blat.proc3825176.chain_3367	3
scaffold_25	spliced_intron	5827765	5828229	-	asmbl_34291	none	blat.proc3825162.chain_876	1	blat.proc3825162.chain_874	1
scaffold_21	ends_in_intron	11272490	11272490	-	asmbl_28117,asmbl_28118	none	STRG.24607.4,Trinity_GG_13770_c0_g1_i5,blat.proc3825160.chain_1826	3	STRG.24607.1,STRG.24607.2,blat.proc3825160.chain_1823,blat.proc3825160.chain_1827,blat.proc3825160.chain_1829	5
scaffold_23	ends_in_intron	2995925	2995925	-	asmbl_30767	none	Trinity_GG_14424_c0_g1_i7,blat.proc3825160.chain_2953	2	STRG.25748.1,STRG.25748.4,STRG.25748.5,blat.proc3825160.chain_2955	4
scaffold_10	skipped_exon	13002218	13002734	+	asmbl_3572	none	STRG.12909.2,blat.proc3825170.chain_1525	2	STRG.12909.1,blat.proc3825170.chain_1524	2
scaffold_19	retained_exon	10205501	10205553	+	asmbl_21624	none	STRG.22401.2,blat.proc3825174.chain_3380	2	STRG.22401.1,blat.proc3825174.chain_3379	2
scaffold_23	alt_acceptor	4503411	4503412	+	asmbl_31516	none	STRG.25867.1,Trinity_GG_31575_c0_g1_i2,blat.proc3825176.chain_2792	3	STRG.25867.2,Trinity_GG_31575_c0_g1_i1,blat.proc3825176.chain_2793	3
scaffold_10	alt_donor	9555421	9555422	+	asmbl_3403	none	STRG.12711.1	1	STRG.12711.2,STRG.12711.3,Trinity_GG_24296_c0_g1_i14,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1284,blat.proc3825170.chain_1286,blat.proc3825170.chain_1287	7
scaffold_3	ends_in_intron	2232783	2232783	+	asmbl_39897	none	blat.proc3825164.chain_3280	1	STRG.3023.1	1
scaffold_17	alt_acceptor	789686	789687	+	asmbl_18574	none	STRG.19934.1	1	STRG.19934.2,blat.proc3825174.chain_823	2
scaffold_9	alternate_exon	4204075	4204117	+	asmbl_53943	none	STRG.11024.1,blat.proc3825168.chain_3487	2	STRG.11024.2,STRG.11024.3	2
scaffold_9	spliced_intron	16569591	16569995	+	asmbl_54597,asmbl_54598,asmbl_54600,asmbl_54603,asmbl_54604,asmbl_54605	none	STRG.11807.1,STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i14,Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i21,blat.proc3825170.chain_610,blat.proc3825170.chain_611,blat.proc3825170.chain_613,blat.proc3825170.chain_615,blat.proc3825170.chain_617	11	Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_612,blat.proc3825170.chain_616	4
scaffold_19	ends_in_intron	13215481	13215481	-	asmbl_22609	none	Trinity_GG_12588_c1_g1_i4,blat.proc3825158.chain_3435	2	STRG.22653.1,blat.proc3825158.chain_3428,blat.proc3825158.chain_3430,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3436	7
scaffold_13	ends_in_intron	13759646	13759646	+	asmbl_11403	none	blat.proc3825172.chain_1232	1	STRG.16429.1,STRG.16429.2,blat.proc3825172.chain_1231	3
scaffold_7	skipped_exon	267889	269120	+	asmbl_49545	none	STRG.8598.6	1	STRG.8598.1,STRG.8598.3,STRG.8598.4	3
scaffold_6	retained_intron	13974353	13974450	+	asmbl_47560	none	blat.proc3825168.chain_645	1	STRG.8149.1,Trinity_GG_21793_c0_g1_i3,blat.proc3825168.chain_646	3
scaffold_8	alt_acceptor	4185971	4185972	+	asmbl_52820	none	blat.proc3825168.chain_2473	1	STRG.9897.1,blat.proc3825168.chain_2471	2
scaffold_13	alternate_exon	6396425	6396467	+	asmbl_10927	none	Trinity_GG_26055_c0_g1_i2,blat.proc3825172.chain_653	2	STRG.15929.3,STRG.15929.5,Trinity_GG_26055_c0_g1_i3,blat.proc3825172.chain_656	4
scaffold_18	alt_donor	7866784	7866785	-	asmbl_19984	none	STRG.21486.1	1	blat.proc3825158.chain_2406,blat.proc3825158.chain_2407	2
scaffold_2	spliced_intron	13052907	13053021	+	asmbl_24809	none	STRG.2330.2,blat.proc3825164.chain_2481	2	STRG.2330.1,Trinity_GG_18599_c1_g1_i3,blat.proc3825164.chain_2478,blat.proc3825164.chain_2479	4
scaffold_18	alt_acceptor	4124777	4124778	+	asmbl_20497,asmbl_20499	none	STRG.21212.1,Trinity_GG_28938_c0_g1_i1,Trinity_GG_28938_c0_g1_i3,blat.proc3825174.chain_2070,blat.proc3825174.chain_2071	5	STRG.21212.2,STRG.21212.3,Trinity_GG_28938_c0_g1_i2,blat.proc3825174.chain_2069	4
scaffold_6	skipped_exon	5057085	5058540	-	asmbl_48391	none	STRG.7486.5	1	STRG.7486.1,STRG.7486.2,STRG.7486.3,blat.proc3825150.chain_3643,blat.proc3825150.chain_3645	5
scaffold_24	alt_donor	6297525	6297526	+	asmbl_32299	none	STRG.26687.2,Trinity_GG_32069_c0_g1_i2,blat.proc3825176.chain_3643	3	STRG.26687.1,Trinity_GG_32069_c0_g1_i1,blat.proc3825176.chain_3641	3
scaffold_15	skipped_exon	5742852	5745664	-	asmbl_14230,asmbl_14231	none	STRG.18261.3,STRG.18261.4	2	STRG.18261.1,STRG.18261.2	2
scaffold_16	starts_in_intron	13214039	13214039	+	asmbl_16657	none	blat.proc3825174.chain_694	1	STRG.19781.1,STRG.19781.2,STRG.19781.3,blat.proc3825174.chain_693,blat.proc3825174.chain_695	5
scaffold_3	starts_in_intron	14807323	14807323	-	asmbl_39428	none	STRG.3824.1,blat.proc3825150.chain_25	2	STRG.3824.2,blat.proc3825150.chain_23,blat.proc3825150.chain_24	3
scaffold_21	ends_in_intron	706272	706272	-	asmbl_27354	none	blat.proc3825160.chain_794	1	Trinity_GG_13202_c0_g1_i4,Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793,blat.proc3825160.chain_797	4
scaffold_20	alt_donor	10057119	10057120	-	asmbl_26075	none	STRG.23552.2,blat.proc3825160.chain_625	2	STRG.23552.1,blat.proc3825160.chain_624	2
scaffold_2	alt_acceptor	7469822	7469823	-	asmbl_23260	none	STRG.2074.2,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057	3	blat.proc3825148.chain_2063	1
scaffold_19	retained_intron	30998	31076	+	asmbl_21170	none	Trinity_GG_29379_c0_g1_i3,blat.proc3825174.chain_2863	2	STRG.21819.1,Trinity_GG_29379_c0_g1_i1,blat.proc3825174.chain_2862	3
scaffold_2	starts_in_intron	20316096	20316096	+	asmbl_25325	none	blat.proc3825164.chain_3104	1	STRG.2877.4,STRG.2877.5,blat.proc3825164.chain_3105	3
scaffold_28	alt_acceptor	7235089	7235090	+	asmbl_37645	none	STRG.29785.3	1	STRG.29785.2,Trinity_GG_33804_c1_g1_i1,blat.proc3825178.chain_2931,blat.proc3825178.chain_2933	4
scaffold_4	retained_exon	3252036	3252365	-	asmbl_42429	none	STRG.4250.1,blat.proc3825150.chain_485	2	STRG.4250.2	1
scaffold_25	alt_acceptor	430320	430321	-	asmbl_33984	none	STRG.27084.1	1	STRG.27084.2,blat.proc3825162.chain_467	2
scaffold_15	alt_acceptor	3021700	3021701	+	asmbl_15092	none	STRG.18090.1,blat.proc3825172.chain_2764	2	STRG.18090.2,blat.proc3825172.chain_2765	2
scaffold_28	retained_intron	8276719	8276800	+	asmbl_37737	none	Trinity_GG_33867_c0_g1_i2,blat.proc3825178.chain_3057	2	STRG.29892.1	1
scaffold_16	retained_intron	810169	810259	-	asmbl_16909,asmbl_16910,asmbl_16911	none	blat.proc3825158.chain_129,blat.proc3825158.chain_131,blat.proc3825158.chain_132	3	STRG.19064.1,STRG.19064.3,blat.proc3825158.chain_130	3
scaffold_16	spliced_intron	6206176	6206400	-	asmbl_17150	none	STRG.19373.1,blat.proc3825158.chain_535	2	blat.proc3825158.chain_534,blat.proc3825158.chain_536	2
scaffold_17	retained_intron	4005466	4005564	+	asmbl_18763	none	blat.proc3825174.chain_1055	1	STRG.20163.2,blat.proc3825174.chain_1054	2
scaffold_17	starts_in_intron	3997677	3997677	+	asmbl_18759	none	STRG.20160.3	1	STRG.20160.1,STRG.20160.2,blat.proc3825174.chain_1032	3
scaffold_15	spliced_intron	15857347	15857505	+	asmbl_15819,asmbl_15825,asmbl_15828	none	STRG.18973.1,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i5,blat.proc3825172.chain_3568,blat.proc3825172.chain_3576,blat.proc3825172.chain_3577	6	Trinity_GG_27688_c0_g1_i10,blat.proc3825172.chain_3573,blat.proc3825172.chain_3578	3
scaffold_16	alt_donor	3870486	3870487	-	asmbl_17007	none	STRG.19196.1,blat.proc3825158.chain_332	2	STRG.19196.2,blat.proc3825158.chain_333	2
scaffold_22	spliced_intron	9340091	9340165	-	asmbl_29538	none	STRG.25279.2	1	STRG.25279.1,blat.proc3825160.chain_2434	2
scaffold_19	spliced_intron	10303465	10303671	+	asmbl_21645	none	STRG.22416.1,blat.proc3825174.chain_3424	2	STRG.22416.2,blat.proc3825174.chain_3425	2
scaffold_1	alt_donor	11801244	11801245	-	asmbl_670	none	STRG.796.1	1	STRG.796.3,Trinity_GG_419_c0_g1_i5,blat.proc3825148.chain_788	3
scaffold_7	alt_donor	4931699	4931700	+	asmbl_49773	none	STRG.8852.2,blat.proc3825168.chain_1347	2	blat.proc3825168.chain_1351	1
scaffold_22	retained_intron	4223113	4223394	-	asmbl_29223,asmbl_29227	none	blat.proc3825160.chain_2069,blat.proc3825160.chain_2075	2	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2074,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	9
scaffold_6	alt_donor	15112439	15112440	+	asmbl_47655,asmbl_47656	none	STRG.8277.1,STRG.8277.3,blat.proc3825168.chain_760	3	STRG.8277.2	1
scaffold_12	ends_in_intron	7962902	7962902	+	asmbl_7799	none	Trinity_GG_25497_c0_g1_i2,blat.proc3825170.chain_3357	2	STRG.14861.1,STRG.14861.2,blat.proc3825170.chain_3356,blat.proc3825170.chain_3358	4
scaffold_7	spliced_intron	15020785	15020865	-	asmbl_51350	none	STRG.9519.1,blat.proc3825152.chain_1865	2	blat.proc3825152.chain_1866	1
scaffold_13	spliced_intron	1238377	1238489	+	asmbl_10548	none	STRG.15494.7	1	Trinity_GG_25867_c0_g1_i1,blat.proc3825172.chain_308	2
scaffold_11	skipped_exon	13035297	13036295	-	asmbl_7113,asmbl_7116	none	STRG.14179.1,blat.proc3825154.chain_2755,blat.proc3825154.chain_2757	3	STRG.14179.3,blat.proc3825154.chain_2756	2
scaffold_15	skipped_exon	4982605	4984030	-	asmbl_14179,asmbl_14182	none	STRG.18211.1,STRG.18211.3,blat.proc3825156.chain_3072	3	STRG.18211.4	1
scaffold_27	skipped_exon	6195178	6196958	+	asmbl_36379	none	STRG.29014.3	1	STRG.29014.1,STRG.29014.4	2
scaffold_1210	alternate_exon	1061	1175	-	asmbl_9262	none	STRG.30565.1	1	STRG.30565.2	1
scaffold_5	alternate_exon	17192039	17192382	+	asmbl_46141	none	STRG.6891.3,blat.proc3825166.chain_3059	2	STRG.6891.2	1
scaffold_14	spliced_intron	7480485	7480705	-	asmbl_13212	none	STRG.17192.3	1	STRG.17192.1,STRG.17192.2,Trinity_GG_9570_c1_g1_i1,blat.proc3825156.chain_1871,blat.proc3825156.chain_1872	5
scaffold_22	retained_intron	4211178	4211284	+	asmbl_29973,asmbl_29974	none	Trinity_GG_31039_c0_g1_i2,blat.proc3825176.chain_1936,blat.proc3825176.chain_1937	3	STRG.24837.1	1
scaffold_7	retained_exon	8172976	8173017	+	asmbl_49959	none	STRG.9049.2,blat.proc3825168.chain_1535	2	STRG.9049.1,blat.proc3825168.chain_1534	2
scaffold_7	retained_intron	13196688	13197769	-	asmbl_51295,asmbl_51296	none	Trinity_GG_5301_c0_g1_i11,blat.proc3825152.chain_1782,blat.proc3825152.chain_1784,blat.proc3825152.chain_1789	4	STRG.9431.1,blat.proc3825152.chain_1783,blat.proc3825152.chain_1785,blat.proc3825152.chain_1788	4
scaffold_15	alt_acceptor	15871121	15871122	+	asmbl_15834,asmbl_15836	none	STRG.18969.1,STRG.18969.2,blat.proc3825172.chain_3546	3	STRG.18969.3	1
scaffold_14	starts_in_intron	13879730	13879730	+	asmbl_12507	none	blat.proc3825172.chain_2374	1	STRG.17666.1,blat.proc3825172.chain_2375	2
scaffold_17	starts_in_intron	9974200	9974200	+	asmbl_19138	none	Trinity_GG_28606_c1_g1_i1,blat.proc3825174.chain_1490	2	STRG.20615.2,STRG.20615.3	2
scaffold_10	alt_acceptor	14699982	14699983	+	asmbl_3654,asmbl_3656	none	STRG.13024.2,blat.proc3825170.chain_1625,blat.proc3825170.chain_1626	3	STRG.13024.1,blat.proc3825170.chain_1624,blat.proc3825170.chain_1627,blat.proc3825170.chain_1628	4
scaffold_15	retained_intron	12742577	12743313	+	asmbl_15602	none	blat.proc3825172.chain_3377	1	STRG.18732.1,blat.proc3825172.chain_3378	2
scaffold_15	starts_in_intron	8967059	8967059	+	asmbl_15369	none	Trinity_GG_27428_c0_g1_i3	1	STRG.18441.1	1
scaffold_17	spliced_intron	14349448	14349635	-	asmbl_18424,asmbl_18427	none	STRG.20914.2,blat.proc3825158.chain_1892,blat.proc3825158.chain_1893	3	blat.proc3825158.chain_1890	1
scaffold_9	alt_acceptor	17741783	17741784	+	asmbl_54640,asmbl_54643,asmbl_54645	none	STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_563	3	STRG.11863.1,blat.proc3825170.chain_565,blat.proc3825170.chain_566,blat.proc3825170.chain_567	4
scaffold_2	alt_donor	4680626	4680627	+	asmbl_24379	none	blat.proc3825164.chain_1934	1	STRG.1894.1,blat.proc3825164.chain_1933	2
scaffold_16	spliced_intron	14615041	14615251	-	asmbl_17476,asmbl_17479	none	STRG.19858.3,blat.proc3825158.chain_914	2	STRG.19858.4,blat.proc3825158.chain_911	2
scaffold_12	alt_acceptor	4352470	4352471	+	asmbl_7605	none	STRG.14613.1,blat.proc3825170.chain_3131	2	STRG.14613.2,blat.proc3825170.chain_3132	2
scaffold_19	ends_in_intron	678601	678601	+	asmbl_21200	none	blat.proc3825174.chain_2899	1	STRG.21850.1,blat.proc3825174.chain_2897,blat.proc3825174.chain_2900	3
scaffold_1	starts_in_intron	15877108	15877108	+	asmbl_2450	none	blat.proc3825164.chain_1263	1	STRG.1113.1,blat.proc3825164.chain_1262	2
scaffold_9	skipped_exon	11464682	11466193	-	asmbl_55292	none	STRG.11462.1	1	STRG.11462.2	1
scaffold_22	ends_in_intron	10523511	10523511	+	asmbl_30359	none	Trinity_GG_31343_c0_g1_i1,blat.proc3825176.chain_2419	2	STRG.25399.1,Trinity_GG_31343_c0_g1_i2,blat.proc3825176.chain_2420	3
scaffold_1	retained_exon	1978703	1978798	-	asmbl_99	none	blat.proc3825148.chain_133	1	blat.proc3825148.chain_135	1
scaffold_15	alt_acceptor	8797682	8797683	-	asmbl_14353,asmbl_14354	none	STRG.18424.1,blat.proc3825156.chain_3311,blat.proc3825156.chain_3314	3	STRG.18424.3	1
scaffold_23	alt_acceptor	361677	361678	-	asmbl_30591,asmbl_30596,asmbl_30599	none	STRG.25564.3,Trinity_GG_14303_c0_g1_i9,blat.proc3825160.chain_2724,blat.proc3825160.chain_2725,blat.proc3825160.chain_2728	5	STRG.25564.1,STRG.25564.2,STRG.25564.4,Trinity_GG_14303_c0_g1_i3,Trinity_GG_14303_c0_g1_i4,blat.proc3825160.chain_2720,blat.proc3825160.chain_2721,blat.proc3825160.chain_2722,blat.proc3825160.chain_2723,blat.proc3825160.chain_2726,blat.proc3825160.chain_2727	11
scaffold_26	starts_in_intron	9608449	9608449	+	asmbl_35246	none	Trinity_GG_33085_c0_g1_i4,blat.proc3825178.chain_1631	2	STRG.28513.1,STRG.28513.2,Trinity_GG_33085_c0_g1_i1,Trinity_GG_33085_c0_g1_i3,blat.proc3825178.chain_1632,blat.proc3825178.chain_1633	6
scaffold_8	alternate_exon	22159	22550	-	asmbl_51684	none	blat.proc3825152.chain_2048	1	STRG.9705.2	1
scaffold_11	alternate_exon	1158833	1158920	+	asmbl_5327,asmbl_5328	none	STRG.13315.1,Trinity_GG_24587_c0_g1_i1,blat.proc3825170.chain_1782,blat.proc3825170.chain_1784	4	STRG.13315.2,STRG.13315.3	2
scaffold_3	ends_in_intron	14776874	14776874	-	asmbl_39426	none	STRG.3822.3,blat.proc3825150.chain_38	2	STRG.3822.1,STRG.3822.2,blat.proc3825150.chain_40	3
scaffold_15	alt_acceptor	6889478	6889479	-	asmbl_14260,asmbl_14264,asmbl_14265,asmbl_14267,asmbl_14268,asmbl_14269,asmbl_14270	none	STRG.18301.1,STRG.18301.2,STRG.18301.4,STRG.18301.5,STRG.18301.7,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	9	STRG.18301.3,blat.proc3825156.chain_3153	2
scaffold_17	retained_intron	6808283	6808729	+	asmbl_18878	none	STRG.20335.2,Trinity_GG_28412_c2_g1_i1,blat.proc3825174.chain_1114	3	STRG.20335.1,Trinity_GG_28412_c1_g1_i1,blat.proc3825174.chain_1113	3
scaffold_6	starts_in_intron	14037970	14037970	-	asmbl_48982	none	Trinity_GG_4645_c0_g1_i3,blat.proc3825152.chain_591	2	STRG.8161.1	1
scaffold_15	starts_in_intron	1989011	1989011	+	asmbl_15047	none	Trinity_GG_27201_c0_g1_i4,blat.proc3825172.chain_2705	2	STRG.17988.1,STRG.17988.2,blat.proc3825172.chain_2706,blat.proc3825172.chain_2708,blat.proc3825172.chain_2709	5
scaffold_10	alternate_exon	17004897	17005092	+	asmbl_3736,asmbl_3738	none	STRG.13161.1,STRG.13161.2,Trinity_GG_24546_c0_g1_i1,blat.proc3825170.chain_1722	4	STRG.13161.3,Trinity_GG_24546_c0_g1_i2,blat.proc3825170.chain_1721	3
scaffold_25	alternate_exon	4588970	4588997	-	asmbl_34213	none	STRG.27396.3,blat.proc3825162.chain_725	2	STRG.27396.1,STRG.27396.2,blat.proc3825162.chain_726	3
scaffold_56	alt_acceptor	7799	7800	-	asmbl_46568	none	STRG.30074.2	1	STRG.30074.1,Trinity_GG_16874_c0_g1_i1	2
scaffold_5	alt_donor	3774961	3774962	+	asmbl_45236,asmbl_45237,asmbl_45238	none	STRG.5842.1,STRG.5842.2,blat.proc3825166.chain_2078,blat.proc3825166.chain_2079	4	STRG.5842.3	1
scaffold_15	retained_intron	14323219	14323986	-	asmbl_14712,asmbl_14718	none	Trinity_GG_10597_c0_g1_i3,Trinity_GG_10597_c0_g1_i4,blat.proc3825156.chain_3718	3	Trinity_GG_10597_c0_g1_i8,blat.proc3825156.chain_3715	2
scaffold_26	starts_in_intron	10099067	10099067	-	asmbl_35812	none	blat.proc3825162.chain_1716	1	STRG.28531.1,STRG.28531.2,blat.proc3825162.chain_1717	3
scaffold_6	spliced_intron	2908621	2908725	+	asmbl_46785,asmbl_46789	none	Trinity_GG_21339_c0_g1_i1,Trinity_GG_21339_c0_g1_i9,blat.proc3825166.chain_3530,blat.proc3825166.chain_3531	4	STRG.7298.2	1
scaffold_21	alt_donor	8278443	8278444	+	asmbl_28803	none	blat.proc3825176.chain_1550	1	STRG.24368.1,STRG.24368.2,STRG.24368.3,STRG.24368.4	4
scaffold_15	starts_in_intron	3368419	3368419	-	asmbl_14091	none	blat.proc3825156.chain_2960	1	STRG.18109.1,STRG.18109.2	2
scaffold_1	ends_in_intron	13510059	13510059	-	asmbl_813	none	Trinity_GG_497_c0_g1_i3,blat.proc3825148.chain_937	2	STRG.962.1,blat.proc3825148.chain_935	2
scaffold_2	retained_intron	17445635	17445797	-	asmbl_23724	none	STRG.2628.2,Trinity_GG_1443_c0_g1_i2	2	STRG.2628.1	1
scaffold_12	alternate_exon	12439703	12446898	+	asmbl_8006	none	STRG.15151.1	1	Trinity_GG_25666_c1_g1_i1,blat.proc3825170.chain_3675	2
scaffold_14	alternate_exon	12825680	12829229	-	asmbl_13613,asmbl_13616,asmbl_13618	none	STRG.17598.1,Trinity_GG_9905_c0_g1_i1,blat.proc3825156.chain_2458,blat.proc3825156.chain_2461,blat.proc3825156.chain_2462	5	STRG.17598.5	1
scaffold_22	alternate_exon	231355	231684	-	asmbl_29075,asmbl_29080	none	STRG.24683.1,blat.proc3825160.chain_1903,blat.proc3825160.chain_1904	3	STRG.24683.2,STRG.24683.3,blat.proc3825160.chain_1907,blat.proc3825160.chain_1908	4
scaffold_27	alt_acceptor	1961753	1961754	+	asmbl_36049	none	STRG.28677.2,blat.proc3825178.chain_1771	2	STRG.28677.1,blat.proc3825178.chain_1772,blat.proc3825178.chain_1775	3
scaffold_20	starts_in_intron	7183907	7183907	+	asmbl_26703	none	Trinity_GG_30167_c1_g1_i4,blat.proc3825176.chain_466	2	STRG.23286.1	1
scaffold_25	alternate_exon	4869770	4870037	-	asmbl_34229	none	STRG.27419.2,Trinity_GG_15366_c0_g1_i2,blat.proc3825162.chain_765	3	STRG.27419.1,Trinity_GG_15366_c0_g1_i1,blat.proc3825162.chain_764	3
scaffold_4	retained_intron	16869332	16869415	-	asmbl_43227	none	blat.proc3825150.chain_1391	1	STRG.5273.1,STRG.5273.2,STRG.5273.3,STRG.5273.4,blat.proc3825150.chain_1392	5
scaffold_4	retained_exon	4897738	4897922	-	asmbl_42542	none	STRG.4381.1,blat.proc3825150.chain_618	2	STRG.4381.2,blat.proc3825150.chain_619	2
scaffold_13	alt_donor	8953601	8953602	-	asmbl_10003	none	STRG.16166.1,blat.proc3825156.chain_1079	2	STRG.16166.2,blat.proc3825156.chain_1078	2
scaffold_5	alternate_exon	6564316	6567768	+	asmbl_45433	none	STRG.6054.1,blat.proc3825166.chain_2217	2	blat.proc3825166.chain_2218	1
scaffold_21	ends_in_intron	254754	254754	-	asmbl_27290,asmbl_27292,asmbl_27293	none	blat.proc3825160.chain_805,blat.proc3825160.chain_808,blat.proc3825160.chain_810	3	STRG.23725.1,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_806	5
scaffold_14	starts_in_intron	8093917	8093917	-	asmbl_13245	none	STRG.17229.1,Trinity_GG_9662_c0_g1_i3,blat.proc3825156.chain_2040	3	STRG.17229.2,STRG.17229.3,STRG.17229.4,Trinity_GG_9662_c0_g1_i1,Trinity_GG_9662_c0_g1_i4,Trinity_GG_9662_c0_g1_i5,blat.proc3825156.chain_2042,blat.proc3825156.chain_2043,blat.proc3825156.chain_2044	9
scaffold_1	retained_intron	13030601	13030736	+	asmbl_2297	none	Trinity_GG_17877_c0_g1_i2,blat.proc3825164.chain_1092	2	STRG.937.1	1
scaffold_13	starts_in_intron	7506361	7506361	-	asmbl_9884,asmbl_9894	none	STRG.16047.2,blat.proc3825156.chain_901,blat.proc3825156.chain_908	3	blat.proc3825156.chain_900,blat.proc3825156.chain_906,blat.proc3825156.chain_909	3
scaffold_7	spliced_intron	4915758	4915841	+	asmbl_49760	none	STRG.8836.4	1	STRG.8836.1,blat.proc3825168.chain_1316	2
scaffold_28	alt_acceptor	2656099	2656100	-	asmbl_38072	none	STRG.29458.1	1	STRG.29458.2,blat.proc3825162.chain_2637,blat.proc3825162.chain_2638,blat.proc3825162.chain_2639	4
scaffold_23	alternate_exon	9471459	9471524	-	asmbl_31099	none	blat.proc3825160.chain_3332	1	STRG.26170.1,blat.proc3825160.chain_3333	2
scaffold_26	alt_acceptor	968830	968831	-	asmbl_35395	none	STRG.27894.1,blat.proc3825162.chain_1220	2	STRG.27894.2	1
scaffold_16	spliced_intron	4095144	4095461	+	asmbl_16169,asmbl_16174	none	STRG.19226.1,STRG.19226.2	2	Trinity_GG_27809_c0_g1_i8,blat.proc3825174.chain_61	2
scaffold_17	starts_in_intron	13464606	13464606	+	asmbl_19328	none	Trinity_GG_28749_c0_g1_i1,blat.proc3825174.chain_1714	2	STRG.20823.1,blat.proc3825174.chain_1715	2
scaffold_23	alt_acceptor	2415141	2415142	+	asmbl_31403	none	STRG.25716.1,Trinity_GG_31508_c0_g1_i1,blat.proc3825176.chain_2676	3	STRG.25716.2,STRG.25716.3	2
scaffold_5	retained_intron	6708882	6708998	-	asmbl_44130,asmbl_44132	none	STRG.6077.1,STRG.6077.2,Trinity_GG_3388_c0_g1_i1,blat.proc3825150.chain_2231,blat.proc3825150.chain_2232	5	Trinity_GG_3388_c0_g1_i2,blat.proc3825150.chain_2230	2
scaffold_18	alt_acceptor	9787942	9787943	-	asmbl_20086	none	STRG.21584.1	1	STRG.21584.2	1
scaffold_5	alt_acceptor	13245876	13245877	+	asmbl_45867,asmbl_45868,asmbl_45869	none	STRG.6568.1,STRG.6568.2,blat.proc3825166.chain_2749,blat.proc3825166.chain_2750,blat.proc3825166.chain_2751	5	STRG.6568.3	1
scaffold_2	retained_exon	16403416	16403503	+	asmbl_25137	none	STRG.2582.1,blat.proc3825164.chain_2872	2	blat.proc3825164.chain_2873	1
scaffold_20	alt_acceptor	11948625	11948626	-	asmbl_26206	none	STRG.23700.2	1	blat.proc3825160.chain_679,blat.proc3825160.chain_682	2
scaffold_8	retained_intron	6161273	6161428	-	asmbl_51867	none	blat.proc3825152.chain_2273	1	STRG.10030.1,STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2270,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275,blat.proc3825152.chain_2276	9
scaffold_28	retained_intron	535489	536046	-	asmbl_37906	none	STRG.29276.1,Trinity_GG_16392_c1_g1_i2,Trinity_GG_16392_c2_g1_i1,blat.proc3825162.chain_2445,blat.proc3825162.chain_2446	5	STRG.29276.2,blat.proc3825162.chain_2444	2
scaffold_4	alt_donor	6602024	6602025	+	asmbl_41417	none	blat.proc3825166.chain_972	1	STRG.4521.1,STRG.4521.2,blat.proc3825166.chain_971,blat.proc3825166.chain_973	4
scaffold_14	ends_in_intron	15255060	15255060	+	asmbl_12586	none	STRG.17757.1	1	STRG.17757.2	1
scaffold_6	retained_intron	18716897	18717097	+	asmbl_47847,asmbl_47848	none	STRG.8538.1,Trinity_GG_21982_c0_g1_i3,Trinity_GG_21982_c0_g1_i4,blat.proc3825168.chain_945,blat.proc3825168.chain_946	5	STRG.8538.2	1
scaffold_5	alternate_exon	15042754	15043047	-	asmbl_44633	none	STRG.6698.6,blat.proc3825150.chain_2831	2	STRG.6698.2,STRG.6698.3,blat.proc3825150.chain_2828,blat.proc3825150.chain_2829	4
scaffold_28	spliced_intron	7234548	7234723	+	asmbl_37644	none	blat.proc3825178.chain_2932	1	STRG.29785.2,Trinity_GG_33804_c1_g1_i1,blat.proc3825178.chain_2933	3
scaffold_14	starts_in_intron	6291023	6291023	+	asmbl_12064,asmbl_12065	none	Trinity_GG_26712_c0_g1_i1,Trinity_GG_26712_c0_g1_i3,blat.proc3825172.chain_1844,blat.proc3825172.chain_1845	4	STRG.17083.1,blat.proc3825172.chain_1843	2
scaffold_1	retained_exon	3680249	3680315	+	asmbl_1627	none	blat.proc3825164.chain_366,blat.proc3825164.chain_368	2	STRG.242.2,blat.proc3825164.chain_367	2
scaffold_1	retained_intron	20132712	20132927	+	asmbl_2607	none	Trinity_GG_18065_c0_g1_i2,Trinity_GG_18065_c0_g1_i5,blat.proc3825164.chain_1418,blat.proc3825164.chain_1419	4	blat.proc3825164.chain_1420	1
scaffold_6	starts_in_intron	12983096	12983096	+	asmbl_47467	none	STRG.8059.1	1	blat.proc3825168.chain_549	1
scaffold_6	starts_in_intron	5434459	5434459	+	asmbl_46947,asmbl_46948	none	blat.proc3825166.chain_3655,blat.proc3825166.chain_3656	2	STRG.7513.1,STRG.7513.2,STRG.7513.3,Trinity_GG_21394_c0_g1_i4,blat.proc3825166.chain_3653,blat.proc3825166.chain_3654	6
scaffold_5	retained_intron	13664802	13665247	-	asmbl_44550	none	blat.proc3825150.chain_2672	1	STRG.6585.1,STRG.6585.2,blat.proc3825150.chain_2670,blat.proc3825150.chain_2673,blat.proc3825150.chain_2674	5
scaffold_4	alt_acceptor	14290984	14290985	+	asmbl_41856	none	STRG.5043.1,blat.proc3825166.chain_1462	2	STRG.5043.2	1
scaffold_14	spliced_intron	2600144	2600258	-	asmbl_12966	none	STRG.16868.2	1	STRG.16868.1,Trinity_GG_9451_c0_g1_i1,blat.proc3825156.chain_1685	3
scaffold_23	starts_in_intron	10054949	10054949	+	asmbl_31831	none	Trinity_GG_31751_c0_g1_i2,blat.proc3825176.chain_3097	2	STRG.26211.1,blat.proc3825176.chain_3096	2
scaffold_25	alt_acceptor	8708706	8708707	+	asmbl_33751,asmbl_33752,asmbl_33753,asmbl_33756,asmbl_33759,asmbl_33760	none	STRG.27702.1,STRG.27702.2,STRG.27702.3,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_762,blat.proc3825178.chain_763,blat.proc3825178.chain_766,blat.proc3825178.chain_767,blat.proc3825178.chain_768	9	Trinity_GG_32580_c0_g1_i6,blat.proc3825178.chain_765	2
scaffold_27	alt_donor	638591	638592	-	asmbl_36708	none	Trinity_GG_16002_c1_g1_i5,blat.proc3825162.chain_1842	2	STRG.28585.1,Trinity_GG_16002_c1_g1_i6,blat.proc3825162.chain_1843	3
scaffold_13	retained_intron	2270688	2270802	-	asmbl_9438,asmbl_9441,asmbl_9442,asmbl_9443	none	STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_400	9	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9
scaffold_2	spliced_intron	18614248	18614705	-	asmbl_23804	none	STRG.2737.1,blat.proc3825148.chain_2649	2	blat.proc3825148.chain_2648	1
scaffold_3	starts_in_intron	14695645	14695645	+	asmbl_40547	none	Trinity_GG_19422_c0_g1_i2,blat.proc3825166.chain_265	2	STRG.3817.1,Trinity_GG_19422_c0_g1_i1,blat.proc3825166.chain_266	3
scaffold_4	alternate_exon	7016153	7016283	+	asmbl_41441	none	Trinity_GG_19824_c0_g1_i3	1	STRG.4535.1,Trinity_GG_19824_c0_g1_i2,blat.proc3825166.chain_986	3
scaffold_28	starts_in_intron	2596072	2596072	-	asmbl_38066	none	STRG.29435.2	1	STRG.29435.1,STRG.29435.3,blat.proc3825162.chain_2632	3
scaffold_15	alt_donor	1505130	1505131	-	asmbl_13958	none	STRG.17963.1,blat.proc3825156.chain_2766	2	STRG.17963.2,blat.proc3825156.chain_2765,blat.proc3825156.chain_2769	3
scaffold_11	alt_donor	7049528	7049529	+	asmbl_5646,asmbl_5648,asmbl_5650,asmbl_5651	none	STRG.13733.2,STRG.13733.3,STRG.13733.5,Trinity_GG_24878_c0_g1_i5,Trinity_GG_24878_c0_g1_i8,blat.proc3825170.chain_2270,blat.proc3825170.chain_2273	7	STRG.13733.1,STRG.13733.4,Trinity_GG_24878_c0_g1_i2,blat.proc3825170.chain_2272	4
scaffold_5	spliced_intron	5755722	5756080	+	asmbl_45372,asmbl_45374	none	STRG.5996.3,STRG.5996.4	2	STRG.5996.1,Trinity_GG_20558_c0_g1_i4	2
scaffold_14	spliced_intron	5597207	5597301	+	asmbl_12030,asmbl_12031,asmbl_12032	none	STRG.17042.1,STRG.17042.2,blat.proc3825172.chain_1824,blat.proc3825172.chain_1830	4	Trinity_GG_26703_c1_g1_i2,blat.proc3825172.chain_1827	2
scaffold_1	alternate_exon	16731916	16733505	+	asmbl_2503	none	blat.proc3825164.chain_1255	1	STRG.1176.2	1
scaffold_5	starts_in_intron	16017273	16017273	-	asmbl_44739	none	Trinity_GG_3751_c0_g1_i3,blat.proc3825150.chain_2867	2	STRG.6788.1,STRG.6788.2,Trinity_GG_3751_c0_g1_i4,blat.proc3825150.chain_2865,blat.proc3825150.chain_2866,blat.proc3825150.chain_2868	6
scaffold_19	retained_intron	12207952	12208221	+	asmbl_21761	none	STRG.22551.2,Trinity_GG_29759_c0_g1_i2,Trinity_GG_29759_c0_g1_i3,blat.proc3825174.chain_3519,blat.proc3825174.chain_3522	5	STRG.22551.1,Trinity_GG_29759_c0_g1_i1,blat.proc3825174.chain_3521	3
scaffold_10	starts_in_intron	11603845	11603845	+	asmbl_3479	none	blat.proc3825170.chain_1425	1	STRG.12815.1,STRG.12815.2,STRG.12815.3,STRG.12815.4,blat.proc3825170.chain_1424,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1428,blat.proc3825170.chain_1429	9
scaffold_4	starts_in_intron	16567526	16567526	-	asmbl_43197	none	Trinity_GG_2928_c0_g1_i3,blat.proc3825150.chain_1415	2	STRG.5232.1,STRG.5232.2,blat.proc3825150.chain_1414	3
scaffold_21	retained_intron	7928625	7928725	+	asmbl_28773	none	STRG.24330.5	1	STRG.24330.4,blat.proc3825176.chain_1543	2
scaffold_19	alt_acceptor	678962	678963	+	asmbl_21199	none	STRG.21850.1,blat.proc3825174.chain_2900	2	blat.proc3825174.chain_2897	1
scaffold_13	ends_in_intron	5948379	5948379	-	asmbl_9761	none	STRG.15911.5	1	STRG.15911.1,STRG.15911.2,STRG.15911.3,STRG.15911.4,blat.proc3825156.chain_755,blat.proc3825156.chain_756	6
scaffold_28	starts_in_intron	3927592	3927592	+	asmbl_37504	none	Trinity_GG_33723_c0_g2_i1,blat.proc3825178.chain_2786	2	STRG.29602.1,blat.proc3825178.chain_2785	2
scaffold_11	alternate_exon	3542032	3552817	+	asmbl_5451	none	STRG.13482.1,blat.proc3825170.chain_2029,blat.proc3825170.chain_2031	3	blat.proc3825170.chain_2028	1
scaffold_6	alt_donor	11483459	11483460	+	asmbl_47326,asmbl_47327,asmbl_47330,asmbl_47331,asmbl_47332,asmbl_47334	none	STRG.7943.1,STRG.7943.2,STRG.7943.3,blat.proc3825168.chain_309,blat.proc3825168.chain_310,blat.proc3825168.chain_312,blat.proc3825168.chain_313,blat.proc3825168.chain_314	8	STRG.7943.4	1
scaffold_13	spliced_intron	4077097	4077213	+	asmbl_10756	none	STRG.15729.1	1	STRG.15729.2,Trinity_GG_25948_c0_g1_i1,blat.proc3825172.chain_456	3
scaffold_16	alternate_exon	2214757	2214954	+	asmbl_16123,asmbl_16124	none	STRG.19123.1,STRG.19123.2,Trinity_GG_27776_c0_g1_i2,blat.proc3825172.chain_3744	4	blat.proc3825172.chain_3745	1
scaffold_7	spliced_intron	16829502	16829802	-	asmbl_51420	none	STRG.9594.1,blat.proc3825152.chain_1908	2	Trinity_GG_5367_c0_g1_i2,blat.proc3825152.chain_1909	2
scaffold_13	alternate_exon	709750	709829	+	asmbl_10502	none	STRG.15456.2,blat.proc3825172.chain_164	2	STRG.15456.1,blat.proc3825172.chain_165	2
scaffold_20	alt_donor	6950010	6950011	-	asmbl_25855,asmbl_25859	none	STRG.23269.2,blat.proc3825160.chain_307	2	STRG.23269.3,STRG.23269.5,STRG.23269.6,blat.proc3825160.chain_305,blat.proc3825160.chain_306,blat.proc3825160.chain_308	6
scaffold_2	skipped_exon	18709372	18710245	+	asmbl_25234	none	STRG.2748.2,blat.proc3825164.chain_3004	2	STRG.2748.1,Trinity_GG_18860_c1_g1_i4,blat.proc3825164.chain_3005,blat.proc3825164.chain_3006	4
scaffold_25	alt_acceptor	8049527	8049528	+	asmbl_33716	none	STRG.27635.1,blat.proc3825178.chain_744	2	blat.proc3825178.chain_745	1
scaffold_8	alternate_exon	17764367	17764581	+	asmbl_53500	none	STRG.10691.2	1	STRG.10691.1,Trinity_GG_23246_c0_g1_i2,blat.proc3825168.chain_3233	3
scaffold_23	retained_intron	5182962	5183052	-	asmbl_30895	none	STRG.25899.1,blat.proc3825160.chain_3053	2	STRG.25899.2	1
scaffold_28	starts_in_intron	3178674	3178674	-	asmbl_38138	none	STRG.29531.1,blat.proc3825162.chain_2696	2	STRG.29531.2,Trinity_GG_16559_c0_g1_i2,blat.proc3825162.chain_2697	3
scaffold_23	alternate_exon	7917468	7921116	-	asmbl_31060	none	STRG.26100.3	1	STRG.26100.1,blat.proc3825160.chain_3253	2
scaffold_2	skipped_exon	18950712	18952345	+	asmbl_25253	none	STRG.2769.1,blat.proc3825164.chain_2977	2	STRG.2769.2,STRG.2769.3,blat.proc3825164.chain_2976	3
scaffold_17	alternate_exon	4640277	4640412	-	asmbl_17873	none	blat.proc3825158.chain_1232	1	STRG.20196.2,blat.proc3825158.chain_1231	2
scaffold_13	ends_in_intron	5809021	5809021	+	asmbl_10903	none	blat.proc3825172.chain_711	1	STRG.15896.1,blat.proc3825172.chain_706	2
scaffold_7	alt_donor	11851482	11851483	+	asmbl_50193	none	STRG.9305.3,blat.proc3825168.chain_1811,blat.proc3825168.chain_1813	3	STRG.9305.1,blat.proc3825168.chain_1812	2
scaffold_11	alt_donor	8790334	8790335	-	asmbl_6875	none	STRG.13904.3	1	STRG.13904.1,blat.proc3825170.chain_2482,blat.proc3825170.chain_2483,blat.proc3825170.chain_2484	4
scaffold_9	retained_intron	17456173	17456492	-	asmbl_55642	none	STRG.11839.1,Trinity_GG_6557_c0_g1_i4,blat.proc3825154.chain_333,blat.proc3825154.chain_334	4	STRG.11839.2,blat.proc3825154.chain_335	2
scaffold_9	ends_in_intron	15498416	15498416	-	asmbl_55535	none	STRG.11747.5,blat.proc3825154.chain_213	2	STRG.11747.1,STRG.11747.3,STRG.11747.4,blat.proc3825154.chain_214,blat.proc3825154.chain_215,blat.proc3825154.chain_216,blat.proc3825154.chain_218	7
scaffold_6	alt_acceptor	6921739	6921740	-	asmbl_48471,asmbl_48472,asmbl_48473	none	STRG.7597.1,STRG.7597.2,blat.proc3825152.chain_5	3	STRG.7597.3,blat.proc3825152.chain_6	2
scaffold_25	retained_intron	5827048	5828229	-	asmbl_34295	none	blat.proc3825162.chain_874	1	blat.proc3825162.chain_879,blat.proc3825162.chain_880	2
scaffold_14	retained_intron	11569194	11569328	-	asmbl_13495	none	STRG.17494.2	1	STRG.17494.1,blat.proc3825156.chain_2243	2
scaffold_5	spliced_intron	10969290	10969590	+	asmbl_45712,asmbl_45713,asmbl_45716	none	STRG.6375.1,STRG.6375.2,blat.proc3825166.chain_2592,blat.proc3825166.chain_2593,blat.proc3825166.chain_2594	5	Trinity_GG_20790_c2_g1_i1,blat.proc3825166.chain_2595	2
scaffold_1	retained_exon	12747184	12747222	-	asmbl_752	none	Trinity_GG_447_c0_g1_i3,blat.proc3825148.chain_852	2	STRG.895.1,STRG.895.5,blat.proc3825148.chain_850	3
scaffold_7	alt_donor	8398829	8398830	+	asmbl_49995	none	STRG.9075.2	1	STRG.9075.1	1
scaffold_26	spliced_intron	3432400	3432532	+	asmbl_34778,asmbl_34779	none	STRG.28024.1,blat.proc3825178.chain_980,blat.proc3825178.chain_982	3	blat.proc3825178.chain_981	1
scaffold_6	alt_acceptor	15697341	15697342	+	asmbl_47669	none	STRG.8311.1,blat.proc3825168.chain_736	2	STRG.8311.2,blat.proc3825168.chain_737	2
scaffold_6	alternate_exon	5434121	5434251	+	asmbl_46944	none	STRG.7513.3,Trinity_GG_21394_c0_g1_i4,blat.proc3825166.chain_3654	3	STRG.7513.1,STRG.7513.2,blat.proc3825166.chain_3653	3
scaffold_25	starts_in_intron	8700065	8700065	-	asmbl_34460	none	STRG.27695.4,blat.proc3825162.chain_1027	2	STRG.27695.2,blat.proc3825162.chain_1020	2
scaffold_17	ends_in_intron	8845581	8845581	+	asmbl_19026	none	blat.proc3825174.chain_1352	1	STRG.20495.1,STRG.20495.2,blat.proc3825174.chain_1351,blat.proc3825174.chain_1353	4
scaffold_10	ends_in_intron	1451477	1451477	-	asmbl_4057	none	Trinity_GG_6683_c1_g1_i1,blat.proc3825154.chain_566	2	STRG.12017.1,blat.proc3825154.chain_564	2
scaffold_28	alt_acceptor	36652	36653	+	asmbl_37250	none	blat.proc3825178.chain_2455	1	STRG.29236.1,STRG.29236.2,blat.proc3825178.chain_2454,blat.proc3825178.chain_2456	4
scaffold_12	ends_in_intron	11380075	11380075	-	asmbl_8811	none	Trinity_GG_8401_c0_g1_i3,blat.proc3825154.chain_3559	2	STRG.15075.1,blat.proc3825154.chain_3558	2
scaffold_24	alternate_exon	5322574	5322619	-	asmbl_32897	none	STRG.26622.1,blat.proc3825162.chain_9	2	STRG.26622.2	1
scaffold_9	alt_acceptor	11889804	11889805	+	asmbl_54392,asmbl_54394	none	STRG.11516.1,blat.proc3825170.chain_339	2	STRG.11516.2	1
scaffold_25	retained_intron	5828116	5828229	-	asmbl_34295	none	blat.proc3825162.chain_874	1	blat.proc3825162.chain_881	1
scaffold_21	starts_in_intron	2496953	2496953	+	asmbl_28396	none	STRG.23878.2,Trinity_GG_30537_c0_g1_i4,blat.proc3825176.chain_1080	3	STRG.23878.1,Trinity_GG_30537_c0_g1_i2,Trinity_GG_30537_c0_g1_i3,blat.proc3825176.chain_1079,blat.proc3825176.chain_1081,blat.proc3825176.chain_1082	6
scaffold_17	retained_intron	9030443	9030964	-	asmbl_18138	none	Trinity_GG_11556_c0_g1_i5,blat.proc3825158.chain_1574	2	STRG.20532.1,STRG.20532.2,STRG.20532.4,STRG.20532.5,blat.proc3825158.chain_1576	5
scaffold_3	starts_in_intron	13991688	13991688	+	asmbl_40478	none	STRG.3744.6,Trinity_GG_19386_c1_g1_i3,blat.proc3825166.chain_195	3	STRG.3744.1,STRG.3744.2,STRG.3744.4,STRG.3744.5,Trinity_GG_19386_c1_g1_i2	5
scaffold_5	alternate_exon	9072693	9072892	+	asmbl_45596	none	STRG.6245.2,blat.proc3825166.chain_2461	2	STRG.6245.1,blat.proc3825166.chain_2462	2
scaffold_26	alt_donor	6351170	6351171	-	asmbl_35680,asmbl_35684,asmbl_35685	none	STRG.28335.1,STRG.28335.2,STRG.28335.6,blat.proc3825162.chain_1570	4	STRG.28335.3,STRG.28335.5	2
scaffold_4	alt_acceptor	665517	665518	-	asmbl_42339	none	STRG.4141.1,blat.proc3825150.chain_299	2	blat.proc3825150.chain_297,blat.proc3825150.chain_298	2
scaffold_2	alt_donor	5375677	5375678	-	asmbl_23144	none	STRG.1946.3,blat.proc3825148.chain_1904	2	STRG.1946.2,blat.proc3825148.chain_1907	2
scaffold_8	starts_in_intron	4828091	4828091	-	asmbl_51804	none	blat.proc3825152.chain_2172	1	STRG.9947.1,STRG.9947.2,blat.proc3825152.chain_2166,blat.proc3825152.chain_2167	4
scaffold_26	alt_donor	3563037	3563038	+	asmbl_34792,asmbl_34794	none	STRG.28036.1,STRG.28036.2	2	STRG.28036.4	1
scaffold_4	retained_intron	12691444	12691546	-	asmbl_42953	none	STRG.4910.4,blat.proc3825150.chain_1021	2	STRG.4910.1,STRG.4910.3,blat.proc3825150.chain_1018,blat.proc3825150.chain_1019	4
scaffold_6	alternate_exon	10254120	10254174	-	asmbl_48682	none	STRG.7870.2	1	STRG.7870.1,blat.proc3825152.chain_241	2
scaffold_1	alt_donor	16326298	16326299	+	asmbl_2477	none	STRG.1145.2	1	STRG.1145.1	1
scaffold_10	alt_acceptor	4156840	4156841	-	asmbl_4271	none	STRG.12253.3	1	STRG.12253.1,STRG.12253.2,blat.proc3825154.chain_809,blat.proc3825154.chain_810,blat.proc3825154.chain_811	5
scaffold_23	alt_acceptor	7686482	7686483	+	asmbl_31715,asmbl_31718	none	STRG.26090.3,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i3,blat.proc3825176.chain_3053,blat.proc3825176.chain_3054	5	STRG.26090.2,STRG.26090.6,Trinity_GG_31727_c0_g1_i1,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3057	6
scaffold_2	ends_in_intron	7217129	7217129	+	asmbl_24541,asmbl_24543,asmbl_24547	none	STRG.2054.2,STRG.2054.4,Trinity_GG_18495_c0_g1_i7,Trinity_GG_18495_c0_g1_i9,blat.proc3825164.chain_2265,blat.proc3825164.chain_2268	6	STRG.2054.1,STRG.2054.5,Trinity_GG_18495_c0_g1_i4,blat.proc3825164.chain_2266,blat.proc3825164.chain_2274	5
scaffold_2	starts_in_intron	1402439	1402439	+	asmbl_24200	none	Trinity_GG_18250_c0_g1_i2,blat.proc3825164.chain_1808	2	STRG.1616.1,STRG.1616.2,blat.proc3825164.chain_1807	3
scaffold_2	alt_donor	2790468	2790469	-	asmbl_22917	none	STRG.1715.2,blat.proc3825148.chain_1605	2	STRG.1715.1,blat.proc3825148.chain_1603,blat.proc3825148.chain_1604	3
scaffold_25	starts_in_intron	5829097	5829097	-	asmbl_34297	none	blat.proc3825162.chain_881	1	STRG.27479.1,STRG.27479.2,STRG.27479.3,STRG.27479.4,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_879,blat.proc3825162.chain_880	8
scaffold_13	skipped_exon	11376844	11379297	-	asmbl_10087,asmbl_10090	none	STRG.16301.4,blat.proc3825156.chain_1170	2	STRG.16301.1,STRG.16301.2,STRG.16301.3,STRG.16301.5,STRG.16301.8,blat.proc3825156.chain_1169,blat.proc3825156.chain_1172,blat.proc3825156.chain_1173,blat.proc3825156.chain_1174	9
scaffold_8	starts_in_intron	12671654	12671654	+	asmbl_53323	none	Trinity_GG_23102_c0_g1_i1,blat.proc3825168.chain_2970	2	STRG.10438.1,Trinity_GG_23102_c0_g1_i2,blat.proc3825168.chain_2969	3
scaffold_5	alt_donor	16203104	16203105	-	asmbl_44747	none	blat.proc3825150.chain_3001	1	STRG.6805.1	1
scaffold_23	alt_acceptor	2207797	2207798	-	asmbl_30712,asmbl_30714,asmbl_30715	none	STRG.25698.1,STRG.25698.2,STRG.25698.4	3	STRG.25698.5	1
scaffold_24	retained_intron	5244901	5245095	-	asmbl_32884	none	STRG.26615.2	1	STRG.26615.1,blat.proc3825162.chain_1	2
scaffold_15	starts_in_intron	13261644	13261644	-	asmbl_14625	none	blat.proc3825156.chain_3572	1	STRG.18767.1,blat.proc3825156.chain_3570	2
scaffold_2	ends_in_intron	4443705	4443705	-	asmbl_23075	none	Trinity_GG_1040_c0_g1_i1,blat.proc3825148.chain_1845	2	STRG.1873.1,STRG.1873.2,blat.proc3825148.chain_1846	3
scaffold_8	starts_in_intron	16240841	16240841	-	asmbl_52378	none	blat.proc3825152.chain_2808	1	STRG.10612.1,blat.proc3825152.chain_2809	2
scaffold_8	retained_exon	9697152	9697319	+	asmbl_53100,asmbl_53101	none	STRG.10217.2,STRG.10217.3,blat.proc3825168.chain_2769	3	STRG.10217.1,blat.proc3825168.chain_2768	2
scaffold_114	skipped_exon	1785	2828	+	asmbl_7406	none	blat.proc3825178.chain_3275	1	STRG.30150.1,blat.proc3825178.chain_3276	2
scaffold_2	spliced_intron	12645103	12645138	-	asmbl_23468	none	STRG.2317.1	1	STRG.2317.2	1
scaffold_25	alt_acceptor	6058560	6058561	-	asmbl_34315	none	STRG.27486.2	1	STRG.27486.1	1
scaffold_22	alternate_exon	960660	960685	+	asmbl_29908	none	STRG.24743.2	1	STRG.24743.1,blat.proc3825176.chain_1891	2
scaffold_16	alternate_exon	6115896	6118441	+	asmbl_16267	none	STRG.19343.1,blat.proc3825174.chain_239	2	STRG.19343.2	1
scaffold_11	alt_donor	3775786	3775787	-	asmbl_6575	none	STRG.13508.1,blat.proc3825154.chain_2087	2	STRG.13508.3,STRG.13508.4,blat.proc3825154.chain_2084	3
scaffold_14	alternate_exon	14386694	14386977	+	asmbl_12543	none	STRG.17700.3,blat.proc3825172.chain_2406	2	STRG.17700.2	1
scaffold_5	ends_in_intron	10885235	10885235	+	asmbl_45708	none	blat.proc3825166.chain_2582	1	STRG.6360.1,blat.proc3825166.chain_2580	2
scaffold_18	spliced_intron	839307	839434	-	asmbl_19602,asmbl_19603	none	blat.proc3825158.chain_1976,blat.proc3825158.chain_1977	2	blat.proc3825158.chain_1974	1
scaffold_5	alt_donor	938628	938629	-	asmbl_43791	none	STRG.5637.2	1	STRG.5637.1,blat.proc3825150.chain_1831	2
scaffold_3	ends_in_intron	17107095	17107095	+	asmbl_40641	none	Trinity_GG_19477_c0_g1_i4,blat.proc3825166.chain_356	2	STRG.3950.1,Trinity_GG_19477_c0_g1_i1,Trinity_GG_19477_c0_g1_i3,blat.proc3825166.chain_358	4
scaffold_11	alt_donor	8596960	8596961	+	asmbl_5806,asmbl_5808,asmbl_5809	none	STRG.13876.1,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i3,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2448	7	STRG.13876.2,STRG.13876.3,blat.proc3825170.chain_2449	3
scaffold_1	retained_intron	12333296	12334265	-	asmbl_706,asmbl_707	none	STRG.849.2,STRG.849.3,Trinity_GG_444_c0_g1_i7,blat.proc3825148.chain_830,blat.proc3825148.chain_831	5	STRG.849.1,blat.proc3825148.chain_825,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	6
scaffold_3	alternate_exon	19882568	19883060	-	asmbl_39676	none	STRG.4100.5	1	STRG.4100.1,STRG.4100.3,STRG.4100.4,blat.proc3825150.chain_242	4
scaffold_1	retained_intron	5542906	5543635	-	asmbl_271	none	STRG.347.3,Trinity_GG_184_c1_g1_i1,blat.proc3825148.chain_318	3	STRG.347.1,STRG.347.2,blat.proc3825148.chain_317	3
scaffold_18	alt_acceptor	13654103	13654104	-	asmbl_20181	none	STRG.21800.2	1	STRG.21800.1,blat.proc3825158.chain_2602,blat.proc3825158.chain_2603	3
scaffold_6	starts_in_intron	16620909	16620909	-	asmbl_49151	none	STRG.8392.2,blat.proc3825152.chain_836	2	STRG.8392.1,STRG.8392.3,blat.proc3825152.chain_834,blat.proc3825152.chain_835	4
scaffold_3	retained_intron	11997571	11997651	+	asmbl_40388	none	Trinity_GG_19346_c0_g1_i1,blat.proc3825166.chain_115	2	STRG.3623.1	1
scaffold_2	retained_intron	7241982	7242169	+	asmbl_24555,asmbl_24556	none	blat.proc3825164.chain_2170,blat.proc3825164.chain_2171	2	STRG.2055.1,blat.proc3825164.chain_2169,blat.proc3825164.chain_2172,blat.proc3825164.chain_2173	4
scaffold_7	skipped_exon	11767988	11768392	+	asmbl_50187	none	STRG.9289.2	1	STRG.9289.1,blat.proc3825168.chain_1750,blat.proc3825168.chain_1751,blat.proc3825168.chain_1752	4
scaffold_11	alternate_exon	3496309	3497052	+	asmbl_5439	none	STRG.13484.2	1	blat.proc3825170.chain_2034	1
scaffold_8	alt_acceptor	5435080	5435081	+	asmbl_52887	none	STRG.9974.2	1	STRG.9974.1,blat.proc3825168.chain_2430,blat.proc3825168.chain_2431,blat.proc3825168.chain_2432	4
scaffold_24	spliced_intron	718962	719078	+	asmbl_32039,asmbl_32040	none	STRG.26350.2,blat.proc3825176.chain_3340	2	STRG.26350.1,Trinity_GG_31885_c0_g1_i4,blat.proc3825176.chain_3338,blat.proc3825176.chain_3339	4
scaffold_12	alt_donor	14991069	14991070	-	asmbl_9026	none	STRG.15298.1,Trinity_GG_8566_c0_g1_i1,blat.proc3825156.chain_118	3	STRG.15298.3,Trinity_GG_8566_c0_g1_i2,Trinity_GG_8566_c0_g1_i5,blat.proc3825156.chain_116,blat.proc3825156.chain_117	5
scaffold_9	alt_donor	15387630	15387631	+	asmbl_54560,asmbl_54561,asmbl_54563,asmbl_54565	none	STRG.11739.3,STRG.11739.4,blat.proc3825170.chain_499,blat.proc3825170.chain_501	4	STRG.11739.1,STRG.11739.2,blat.proc3825170.chain_498,blat.proc3825170.chain_500,blat.proc3825170.chain_502,blat.proc3825170.chain_503	6
scaffold_20	skipped_exon	11672198	11673842	-	asmbl_26173	none	STRG.23670.2,blat.proc3825160.chain_751	2	STRG.23670.3,blat.proc3825160.chain_749,blat.proc3825160.chain_750	3
scaffold_24	retained_exon	4280562	4280609	+	asmbl_32177	none	STRG.26586.1,blat.proc3825176.chain_3529	2	STRG.26586.2,blat.proc3825176.chain_3528	2
scaffold_6	starts_in_intron	9911089	9911089	+	asmbl_47247	none	STRG.7832.4,blat.proc3825168.chain_260	2	STRG.7832.1,STRG.7832.2	2
scaffold_3	alt_acceptor	7926284	7926285	+	asmbl_40186	none	STRG.3380.2	1	STRG.3380.1	1
scaffold_2	starts_in_intron	1762585	1762585	-	asmbl_22868	none	blat.proc3825148.chain_1594	1	STRG.1647.1,blat.proc3825148.chain_1593	2
scaffold_4	retained_intron	6672886	6673441	-	asmbl_42693	none	STRG.4524.2,Trinity_GG_2560_c0_g1_i1,blat.proc3825150.chain_803	3	STRG.4524.1,STRG.4524.3,blat.proc3825150.chain_802,blat.proc3825150.chain_804	4
scaffold_15	alternate_exon	15347990	15348041	+	asmbl_15753	none	STRG.18919.2	1	STRG.18919.3,Trinity_GG_27682_c0_g1_i1	2
scaffold_5	spliced_intron	18561081	18561149	+	asmbl_46266	none	STRG.6987.2,Trinity_GG_21132_c0_g1_i3,blat.proc3825166.chain_3149	3	Trinity_GG_21132_c0_g1_i13,blat.proc3825166.chain_3156	2
scaffold_18	alt_acceptor	1686663	1686664	-	asmbl_19637	none	STRG.21055.1,blat.proc3825158.chain_1936	2	STRG.21055.2,blat.proc3825158.chain_1935	2
scaffold_2	retained_intron	6350944	6351030	-	asmbl_23194	none	Trinity_GG_1061_c0_g1_i2,blat.proc3825148.chain_1894	2	STRG.2001.1,Trinity_GG_1061_c0_g1_i1,blat.proc3825148.chain_1893	3
scaffold_23	skipped_exon	7915714	7917467	-	asmbl_31060	none	STRG.26100.3	1	STRG.26100.2,blat.proc3825160.chain_3255	2
scaffold_9	alternate_exon	2798113	2804117	+	asmbl_53860,asmbl_53863	none	STRG.10918.2,STRG.10918.5,Trinity_GG_23372_c0_g1_i5,Trinity_GG_23372_c0_g1_i7,blat.proc3825168.chain_3429,blat.proc3825168.chain_3430,blat.proc3825168.chain_3431	7	STRG.10918.3,Trinity_GG_23372_c0_g1_i10,blat.proc3825168.chain_3432	3
scaffold_27	skipped_exon	1728475	1730643	-	asmbl_36784	none	STRG.28661.2,blat.proc3825162.chain_1916	2	STRG.28661.1,blat.proc3825162.chain_1915	2
scaffold_1	retained_exon	20134840	20134894	-	asmbl_1172	none	STRG.1386.1	1	blat.proc3825148.chain_1398	1
scaffold_3	alt_acceptor	3244266	3244267	+	asmbl_39939	none	STRG.3072.2	1	STRG.3072.3	1
scaffold_7	spliced_intron	12053972	12054062	+	asmbl_50205	none	STRG.9309.1,blat.proc3825168.chain_1831	2	blat.proc3825168.chain_1828	1
scaffold_19	alt_donor	10302844	10302845	+	asmbl_21644	none	STRG.22416.4,Trinity_GG_29710_c0_g1_i3,blat.proc3825174.chain_3426	3	STRG.22416.1,blat.proc3825174.chain_3424	2
scaffold_20	alternate_exon	5549488	5550486	-	asmbl_25772	none	STRG.23182.4,blat.proc3825160.chain_219	2	STRG.23182.2,STRG.23182.3	2
scaffold_1	spliced_intron	5748213	5748415	+	asmbl_1785	none	STRG.378.2,Trinity_GG_17563_c0_g1_i1,blat.proc3825164.chain_515	3	STRG.378.1,STRG.378.3,blat.proc3825164.chain_513,blat.proc3825164.chain_516	4
scaffold_13	retained_intron	272420	275404	+	asmbl_10468,asmbl_10472	none	STRG.15434.2,blat.proc3825172.chain_195,blat.proc3825172.chain_197	3	STRG.15434.1,blat.proc3825172.chain_198	2
scaffold_5	skipped_exon	6064854	6065937	+	asmbl_45397	none	STRG.6029.1,blat.proc3825166.chain_2270	2	STRG.6029.2,STRG.6029.3,blat.proc3825166.chain_2269	3
scaffold_5	alt_donor	14261932	14261933	+	asmbl_45916	none	blat.proc3825166.chain_2786	1	STRG.6638.3	1
scaffold_20	spliced_intron	10249203	10249289	-	asmbl_26095	none	STRG.23572.1,blat.proc3825160.chain_660,blat.proc3825160.chain_663	3	blat.proc3825160.chain_662	1
scaffold_10	alt_donor	976825	976826	-	asmbl_4023	none	Trinity_GG_6637_c0_g1_i6	1	STRG.11979.1,STRG.11979.2,Trinity_GG_6637_c0_g1_i3,Trinity_GG_6637_c0_g1_i5,Trinity_GG_6637_c0_g1_i9	5
scaffold_20	spliced_intron	8323604	8323724	+	asmbl_26763	none	STRG.23377.2,blat.proc3825176.chain_507	2	STRG.23377.1,blat.proc3825176.chain_506,blat.proc3825176.chain_508	3
scaffold_14	skipped_exon	7027503	7029081	+	asmbl_12126	none	blat.proc3825172.chain_1932	1	STRG.17153.1,blat.proc3825172.chain_1933	2
scaffold_1	starts_in_intron	11453246	11453246	-	asmbl_624	none	blat.proc3825148.chain_672	1	STRG.759.1,STRG.759.2,blat.proc3825148.chain_673,blat.proc3825148.chain_674	4
scaffold_28	starts_in_intron	5251933	5251933	-	asmbl_38278	none	blat.proc3825162.chain_2793	1	STRG.29678.2,STRG.29678.3,blat.proc3825162.chain_2791,blat.proc3825162.chain_2792	4
scaffold_13	alt_acceptor	3723373	3723374	+	asmbl_10726	none	STRG.15691.2,blat.proc3825172.chain_329	2	STRG.15691.1	1
scaffold_7	retained_intron	13196688	13197490	-	asmbl_51295,asmbl_51296	none	Trinity_GG_5301_c0_g1_i11,blat.proc3825152.chain_1782,blat.proc3825152.chain_1784,blat.proc3825152.chain_1789	4	blat.proc3825152.chain_1787	1
scaffold_7	ends_in_intron	7612000	7612000	-	asmbl_50954	none	Trinity_GG_5069_c0_g1_i2,blat.proc3825152.chain_1362	2	STRG.9014.1,STRG.9014.2,STRG.9014.3,STRG.9014.4,blat.proc3825152.chain_1361,blat.proc3825152.chain_1363	6
scaffold_10	ends_in_intron	10401762	10401762	+	asmbl_3414	none	blat.proc3825170.chain_1320	1	STRG.12725.1,blat.proc3825170.chain_1319	2
scaffold_5	alternate_exon	10307779	10307841	+	asmbl_45673	none	blat.proc3825166.chain_2543	1	STRG.6330.1,blat.proc3825166.chain_2544	2
scaffold_8	retained_intron	16499747	16501670	-	asmbl_52413,asmbl_52418,asmbl_52422	none	STRG.10629.2,blat.proc3825152.chain_2931,blat.proc3825152.chain_2939	3	STRG.10629.1,STRG.10629.3,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2928,blat.proc3825152.chain_2929,blat.proc3825152.chain_2932,blat.proc3825152.chain_2934,blat.proc3825152.chain_2936,blat.proc3825152.chain_2941	10
scaffold_2	alt_donor	2292693	2292694	-	asmbl_22883	none	STRG.1669.2	1	STRG.1669.1	1
scaffold_23	starts_in_intron	3002671	3002671	-	asmbl_30776	none	STRG.25747.1,blat.proc3825160.chain_2939	2	STRG.25747.2,blat.proc3825160.chain_2940	2
scaffold_5	alt_acceptor	15044032	15044033	-	asmbl_44632,asmbl_44633,asmbl_44637,asmbl_44638,asmbl_44639	none	STRG.6698.2,STRG.6698.3,STRG.6698.4,STRG.6698.5,STRG.6698.6	5	Trinity_GG_3732_c0_g1_i1,Trinity_GG_3732_c0_g1_i2,Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2825,blat.proc3825150.chain_2826,blat.proc3825150.chain_2827	6
scaffold_5	spliced_intron	1249677	1249957	-	asmbl_43846,asmbl_43847	none	STRG.5688.1,blat.proc3825150.chain_1932,blat.proc3825150.chain_1933	3	blat.proc3825150.chain_1929	1
scaffold_7	alt_donor	7923646	7923647	-	asmbl_50978,asmbl_50979	none	STRG.9043.1,blat.proc3825152.chain_1441,blat.proc3825152.chain_1443	3	blat.proc3825152.chain_1442	1
scaffold_23	starts_in_intron	6620284	6620284	+	asmbl_31629	none	STRG.26010.2,blat.proc3825176.chain_2889	2	STRG.26010.1,Trinity_GG_31628_c0_g1_i2,blat.proc3825176.chain_2886,blat.proc3825176.chain_2887,blat.proc3825176.chain_2888	5
scaffold_9	alt_donor	17611424	17611425	-	asmbl_55659,asmbl_55660,asmbl_55666	none	STRG.11851.1,STRG.11851.2,STRG.11851.3,blat.proc3825154.chain_294	4	STRG.11851.4,blat.proc3825154.chain_295	2
scaffold_9	alt_donor	14817752	14817753	-	asmbl_55496,asmbl_55503	none	STRG.11702.4,STRG.11702.6,blat.proc3825154.chain_163	3	STRG.11702.1,STRG.11702.2,blat.proc3825154.chain_159,blat.proc3825154.chain_160	4
scaffold_6	ends_in_intron	5260139	5260139	-	asmbl_48410	none	Trinity_GG_4241_c0_g2_i1,blat.proc3825150.chain_3680	2	STRG.7495.1,blat.proc3825150.chain_3679	2
scaffold_11	alt_donor	1862051	1862052	-	asmbl_6454	none	STRG.13346.2,blat.proc3825154.chain_1921	2	STRG.13346.1,blat.proc3825154.chain_1920	2
scaffold_17	starts_in_intron	5694101	5694101	+	asmbl_18826	none	STRG.20272.4	1	STRG.20272.1,STRG.20272.3,Trinity_GG_28413_c0_g1_i1,blat.proc3825174.chain_1116,blat.proc3825174.chain_1117	5
scaffold_14	alt_donor	3588223	3588224	+	asmbl_11951,asmbl_11952,asmbl_11954	none	STRG.16942.1,STRG.16942.3,STRG.16942.4,blat.proc3825172.chain_1709	4	STRG.16942.2,blat.proc3825172.chain_1710,blat.proc3825172.chain_1711	3
scaffold_25	alt_donor	5625916	5625917	-	asmbl_34271	none	STRG.27464.2,blat.proc3825162.chain_830	2	blat.proc3825162.chain_829	1
scaffold_28	alt_donor	816778	816779	-	asmbl_37941	none	blat.proc3825162.chain_2458	1	STRG.29294.1,blat.proc3825162.chain_2459	2
scaffold_11	retained_exon	6711498	6713217	-	asmbl_6735,asmbl_6737,asmbl_6738,asmbl_6740	none	STRG.13716.1,STRG.13716.2,STRG.13716.4,blat.proc3825154.chain_2286,blat.proc3825154.chain_2287	5	STRG.13716.5	1
scaffold_6	alternate_exon	9134983	9135029	+	asmbl_47216	none	STRG.7790.5	1	STRG.7790.1,STRG.7790.2,STRG.7790.3,blat.proc3825168.chain_214,blat.proc3825168.chain_216,blat.proc3825168.chain_217,blat.proc3825168.chain_219	7
scaffold_19	skipped_exon	2780544	2780920	+	asmbl_21278	none	STRG.21962.2	1	STRG.21962.1,blat.proc3825174.chain_2998	2
scaffold_23	alt_donor	9941908	9941909	+	asmbl_31811	none	STRG.26193.2,blat.proc3825176.chain_3168	2	STRG.26193.3	1
scaffold_27	retained_exon	2816041	2816073	+	asmbl_36117,asmbl_36119	none	STRG.28763.2,STRG.28763.4,blat.proc3825178.chain_1923	3	STRG.28763.1,STRG.28763.3,blat.proc3825178.chain_1922,blat.proc3825178.chain_1925	4
scaffold_12	alternate_exon	7652123	7652208	+	asmbl_7777	none	STRG.14846.2,Trinity_GG_25513_c0_g2_i2,blat.proc3825170.chain_3386	3	STRG.14846.1,Trinity_GG_25513_c0_g2_i1,blat.proc3825170.chain_3387	3
scaffold_19	retained_exon	12317592	12317693	+	asmbl_21777	none	STRG.22566.2,blat.proc3825174.chain_3583	2	STRG.22566.1,blat.proc3825174.chain_3584	2
scaffold_20	alt_donor	4262276	4262277	-	asmbl_25732	none	STRG.23110.2	1	STRG.23110.3	1
scaffold_17	retained_intron	10240432	10240572	-	asmbl_18238	none	STRG.20642.1,Trinity_GG_11616_c0_g1_i1,blat.proc3825158.chain_1673	3	STRG.20642.2,Trinity_GG_11616_c0_g1_i2,blat.proc3825158.chain_1674	3
scaffold_1	spliced_intron	6283987	6285080	-	asmbl_338,asmbl_345,asmbl_346	none	STRG.423.2,STRG.423.3,blat.proc3825148.chain_411	3	STRG.423.6,Trinity_GG_229_c0_g1_i11,Trinity_GG_229_c0_g1_i13,blat.proc3825148.chain_408,blat.proc3825148.chain_413	5
scaffold_8	ends_in_intron	4899398	4899398	+	asmbl_52877,asmbl_52880	none	STRG.9956.3,blat.proc3825168.chain_2415	2	STRG.9956.1,STRG.9956.2,blat.proc3825168.chain_2416,blat.proc3825168.chain_2417,blat.proc3825168.chain_2418	5
scaffold_12	ends_in_intron	16438856	16438856	+	asmbl_8187	none	blat.proc3825172.chain_119	1	STRG.15407.2,blat.proc3825172.chain_120	2
scaffold_11	spliced_intron	3300926	3300997	-	asmbl_6547	none	STRG.13460.1,blat.proc3825154.chain_2008	2	blat.proc3825154.chain_2007	1
scaffold_25	alternate_exon	443397	443473	+	asmbl_33335	none	STRG.27092.2	1	STRG.27092.1	1
scaffold_3	alt_donor	17833912	17833913	+	asmbl_40698,asmbl_40699	none	STRG.3996.1,blat.proc3825166.chain_502,blat.proc3825166.chain_505	3	STRG.3996.2,blat.proc3825166.chain_503	2
scaffold_4	alt_acceptor	12531448	12531449	-	asmbl_42917	none	STRG.4888.1,Trinity_GG_2721_c0_g1_i3,blat.proc3825150.chain_1067,blat.proc3825150.chain_1068	4	STRG.4888.2	1
scaffold_70	alt_acceptor	7891	7892	-	asmbl_51599,asmbl_51600	none	STRG.30108.1,blat.proc3825178.chain_3226	2	STRG.30108.2	1
scaffold_5	alternate_exon	10534512	10534616	-	asmbl_44362	none	STRG.6342.3	1	STRG.6342.1,blat.proc3825150.chain_2541	2
scaffold_12	spliced_intron	12287762	12287963	-	asmbl_8854,asmbl_8855,asmbl_8858,asmbl_8859	none	STRG.15130.1,STRG.15130.2,STRG.15130.4,STRG.15130.5	4	STRG.15130.3,Trinity_GG_8430_c0_g1_i1,blat.proc3825154.chain_3606,blat.proc3825154.chain_3607	4
scaffold_3	skipped_exon	17536205	17536591	-	asmbl_39569,asmbl_39571	none	STRG.3989.2,STRG.3989.3,blat.proc3825150.chain_193,blat.proc3825150.chain_194	4	STRG.3989.1,blat.proc3825150.chain_192,blat.proc3825150.chain_195	3
scaffold_322	retained_intron	6574	6737	-	asmbl_40971	none	Trinity_GG_16990_c0_g1_i5,blat.proc3825162.chain_3412	2	STRG.30281.2	1
scaffold_20	ends_in_intron	7182363	7182363	+	asmbl_26700	none	blat.proc3825176.chain_467	1	STRG.23286.1,blat.proc3825176.chain_468	2
scaffold_3	alternate_exon	14216004	14216144	-	asmbl_39342	none	STRG.3758.2	1	STRG.3758.1	1
scaffold_21	alt_acceptor	5956773	5956774	-	asmbl_27710,asmbl_27711	none	blat.proc3825160.chain_1286,blat.proc3825160.chain_1287	2	STRG.24127.1	1
scaffold_3	skipped_exon	13423924	13425865	-	asmbl_39260	none	STRG.3693.2,blat.proc3825148.chain_3583	2	STRG.3693.3,STRG.3693.4,blat.proc3825148.chain_3585,blat.proc3825148.chain_3590	4
scaffold_1	alternate_exon	14075812	14076046	+	asmbl_2330	none	STRG.1003.1,Trinity_GG_17903_c0_g1_i3,blat.proc3825164.chain_1138	3	STRG.1003.2,blat.proc3825164.chain_1136,blat.proc3825164.chain_1137	3
scaffold_20	alt_donor	9965474	9965475	-	asmbl_26065,asmbl_26067	none	STRG.23540.3,Trinity_GG_13133_c0_g1_i4,blat.proc3825160.chain_626	3	Trinity_GG_13133_c0_g1_i3,blat.proc3825160.chain_628	2
scaffold_4	skipped_exon	18555116	18558044	-	asmbl_43381	none	blat.proc3825150.chain_1650	1	STRG.5460.1,STRG.5460.2,blat.proc3825150.chain_1651,blat.proc3825150.chain_1652	4
scaffold_26	retained_intron	5756917	5757157	+	asmbl_35038	none	blat.proc3825178.chain_1328	1	STRG.28274.1,blat.proc3825178.chain_1326	2
scaffold_28	alt_acceptor	2119899	2119900	+	asmbl_37328,asmbl_37329	none	STRG.29370.2,blat.proc3825178.chain_2585	2	STRG.29370.1,blat.proc3825178.chain_2584	2
scaffold_8	retained_intron	16392727	16393145	-	asmbl_52394,asmbl_52395	none	blat.proc3825152.chain_2852,blat.proc3825152.chain_2853	2	STRG.10626.1,STRG.10626.2,STRG.10626.3,STRG.10626.4,Trinity_GG_5893_c0_g1_i6,blat.proc3825152.chain_2845,blat.proc3825152.chain_2846,blat.proc3825152.chain_2848,blat.proc3825152.chain_2849,blat.proc3825152.chain_2850,blat.proc3825152.chain_2851	11
scaffold_5	retained_exon	4683536	4683553	-	asmbl_43983,asmbl_43995	none	STRG.5929.1,blat.proc3825150.chain_2083,blat.proc3825150.chain_2085	3	STRG.5929.4,blat.proc3825150.chain_2080,blat.proc3825150.chain_2084	3
scaffold_9	retained_intron	11793088	11794485	-	asmbl_55303,asmbl_55308	none	STRG.11496.3,blat.proc3825152.chain_3685	2	STRG.11496.2,STRG.11496.4,blat.proc3825152.chain_3683	3
scaffold_13	alt_acceptor	778	779	+	asmbl_10447	none	STRG.15421.2	1	STRG.15421.1,blat.proc3825172.chain_132	2
scaffold_20	skipped_exon	8018205	8018985	-	asmbl_25955	none	STRG.23357.1	1	STRG.23357.2,blat.proc3825160.chain_477	2
scaffold_5	alt_donor	16152037	16152038	+	asmbl_46055	none	STRG.6799.2,blat.proc3825166.chain_2945	2	STRG.6799.1,blat.proc3825166.chain_2944	2
scaffold_28	skipped_exon	7228838	7230748	+	asmbl_37639	none	STRG.29787.2	1	STRG.29787.1,blat.proc3825178.chain_2935	2
scaffold_13	retained_intron	398875	400049	-	asmbl_9337,asmbl_9338,asmbl_9341,asmbl_9350	none	Trinity_GG_8688_c0_g2_i1,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_367,blat.proc3825156.chain_368,blat.proc3825156.chain_369,blat.proc3825156.chain_370	7	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	24
scaffold_7	ends_in_intron	284275	284275	+	asmbl_49547	none	Trinity_GG_22049_c0_g1_i2,blat.proc3825168.chain_1111	2	STRG.8603.1,STRG.8603.2,Trinity_GG_22049_c0_g1_i3	3
scaffold_4	retained_intron	3528251	3528359	-	asmbl_42448	none	STRG.4289.1	1	STRG.4289.3	1
scaffold_11	ends_in_intron	11933156	11933156	-	asmbl_7046	none	Trinity_GG_7854_c9_g1_i1,blat.proc3825154.chain_2603	2	STRG.14177.2,STRG.14177.3,STRG.14177.4	3
scaffold_10	spliced_intron	5856417	5857533	-	asmbl_4399	none	blat.proc3825154.chain_983	1	Trinity_GG_6938_c0_g1_i1,blat.proc3825154.chain_981	2
scaffold_5	alt_acceptor	17216836	17216837	-	asmbl_44795,asmbl_44797,asmbl_44799,asmbl_44800	none	STRG.6894.1,STRG.6894.2,blat.proc3825150.chain_3040,blat.proc3825150.chain_3041,blat.proc3825150.chain_3043	5	blat.proc3825150.chain_3039	1
scaffold_19	retained_intron	10820688	10821270	+	asmbl_21661,asmbl_21663	none	STRG.22421.1,blat.proc3825174.chain_3431,blat.proc3825174.chain_3434	3	STRG.22421.2,Trinity_GG_29712_c0_g1_i1,blat.proc3825174.chain_3432	3
scaffold_13	alternate_exon	9340711	9341204	+	asmbl_11196	none	Trinity_GG_26202_c0_g1_i1,blat.proc3825172.chain_962	2	STRG.16202.2	1
scaffold_11	alt_acceptor	8485386	8485387	+	asmbl_5792	none	STRG.13868.1	1	STRG.13868.2,Trinity_GG_24959_c0_g1_i1,Trinity_GG_24959_c0_g1_i2,blat.proc3825170.chain_2426	4
scaffold_4	retained_intron	9965598	9965735	-	asmbl_42830	none	STRG.4759.2,blat.proc3825150.chain_972	2	blat.proc3825150.chain_971	1
scaffold_17	alternate_exon	10025766	10026434	+	asmbl_19155,asmbl_19157	none	STRG.20619.2,STRG.20619.3	2	STRG.20619.1	1
scaffold_15	spliced_intron	1504460	1504632	-	asmbl_13959	none	blat.proc3825156.chain_2769	1	Trinity_GG_10091_c0_g1_i1,Trinity_GG_10091_c0_g1_i4,blat.proc3825156.chain_2767,blat.proc3825156.chain_2768	4
scaffold_7	starts_in_intron	7612355	7612355	-	asmbl_50954	none	blat.proc3825152.chain_1362	1	STRG.9014.1,STRG.9014.2,STRG.9014.3,STRG.9014.4,blat.proc3825152.chain_1361,blat.proc3825152.chain_1363	6
scaffold_5	alt_donor	14042092	14042093	-	asmbl_44587	none	STRG.6619.1,blat.proc3825150.chain_2835	2	STRG.6619.2,blat.proc3825150.chain_2836	2
scaffold_10	retained_intron	17325750	17326440	-	asmbl_5052	none	STRG.13182.3,blat.proc3825154.chain_1777	2	STRG.13182.2,blat.proc3825154.chain_1776	2
scaffold_20	starts_in_intron	5549810	5549810	-	asmbl_25774	none	Trinity_GG_12903_c2_g1_i1	1	STRG.23182.4	1
scaffold_20	starts_in_intron	10785729	10785729	+	asmbl_26992	none	Trinity_GG_30378_c0_g1_i3,blat.proc3825176.chain_800	2	STRG.23606.1,STRG.23606.2,STRG.23606.3,blat.proc3825176.chain_797,blat.proc3825176.chain_798	5
scaffold_27	ends_in_intron	9916950	9916950	+	asmbl_36544	none	blat.proc3825178.chain_2447	1	blat.proc3825178.chain_2444	1
scaffold_8	retained_exon	14213087	14213163	-	asmbl_52302	none	STRG.10521.2,blat.proc3825152.chain_2755	2	STRG.10521.1	1
scaffold_18	spliced_intron	9804343	9804380	-	asmbl_20091	none	STRG.21590.3	1	STRG.21590.1,STRG.21590.2,Trinity_GG_12073_c0_g1_i1,Trinity_GG_12073_c0_g1_i2,blat.proc3825158.chain_2507,blat.proc3825158.chain_2508	6
scaffold_6	alternate_exon	12379728	12389703	+	asmbl_47394	none	STRG.7997.1,blat.proc3825168.chain_468	2	STRG.7997.2,Trinity_GG_21702_c0_g1_i2,blat.proc3825168.chain_467	3
scaffold_14	alt_acceptor	5947849	5947850	-	asmbl_13103	none	STRG.17059.1,blat.proc3825156.chain_1785	2	STRG.17059.2	1
scaffold_7	ends_in_intron	1446553	1446553	-	asmbl_50735	none	Trinity_GG_4938_c0_g1_i2	1	STRG.8648.1,blat.proc3825152.chain_1132	2
scaffold_8	retained_intron	18421281	18421426	+	asmbl_53546	none	blat.proc3825168.chain_3257	1	STRG.10741.1,STRG.10741.2,blat.proc3825168.chain_3256,blat.proc3825168.chain_3258	4
scaffold_12	ends_in_intron	12504943	12504943	+	asmbl_8010	none	STRG.15166.1	1	STRG.15166.2	1
scaffold_20	alt_donor	9628124	9628125	+	asmbl_26872	none	STRG.23501.4	1	STRG.23501.3,Trinity_GG_30232_c0_g1_i1,blat.proc3825176.chain_566	3
scaffold_20	retained_intron	2613659	2614166	-	asmbl_25653	none	STRG.22989.2	1	STRG.22989.1,blat.proc3825160.chain_38	2
scaffold_4	skipped_exon	12727702	12728360	+	asmbl_41744	none	STRG.4914.2,blat.proc3825166.chain_1317	2	STRG.4914.1,blat.proc3825166.chain_1316	2
scaffold_10	starts_in_intron	9469353	9469353	+	asmbl_3384	none	blat.proc3825170.chain_1238	1	STRG.12689.1,STRG.12689.2,blat.proc3825170.chain_1237	3
scaffold_8	retained_intron	6027967	6028061	+	asmbl_52925	none	blat.proc3825168.chain_2610	1	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2613,blat.proc3825168.chain_2614	5
scaffold_1	starts_in_intron	14265805	14265805	+	asmbl_2360	none	Trinity_GG_17925_c0_g1_i1,blat.proc3825164.chain_1179	2	STRG.1016.1,blat.proc3825164.chain_1178	2
scaffold_1	ends_in_intron	3680315	3680315	+	asmbl_1628	none	blat.proc3825164.chain_369	1	STRG.242.2,blat.proc3825164.chain_367	2
scaffold_16	ends_in_intron	10564715	10564715	-	asmbl_17316	none	blat.proc3825158.chain_713	1	STRG.19623.1,blat.proc3825158.chain_712	2
scaffold_18	alt_acceptor	4762385	4762386	+	asmbl_20559	none	STRG.21273.2	1	STRG.21273.1,STRG.21273.3,STRG.21273.4,Trinity_GG_29026_c1_g1_i4,blat.proc3825174.chain_2228	5
scaffold_23	skipped_exon	2207797	2209152	-	asmbl_30712	none	STRG.25698.2	1	STRG.25698.1,STRG.25698.3,STRG.25698.6	3
scaffold_13	spliced_intron	356960	357391	+	asmbl_10476,asmbl_10479	none	STRG.15441.1,Trinity_GG_25794_c0_g1_i3,blat.proc3825172.chain_152,blat.proc3825172.chain_154	4	Trinity_GG_25794_c0_g1_i2,blat.proc3825172.chain_153	2
scaffold_7	retained_intron	2490307	2490760	+	asmbl_49645,asmbl_49646	none	STRG.8684.1,STRG.8684.2,Trinity_GG_22100_c0_g1_i3,Trinity_GG_22100_c0_g1_i6,blat.proc3825168.chain_1192	5	blat.proc3825168.chain_1196	1
scaffold_21	starts_in_intron	2655311	2655311	-	asmbl_27487,asmbl_27488	none	blat.proc3825160.chain_980,blat.proc3825160.chain_982	2	STRG.23906.1,STRG.23906.2,STRG.23906.3,Trinity_GG_13292_c0_g1_i2,Trinity_GG_13292_c0_g1_i3,blat.proc3825160.chain_976,blat.proc3825160.chain_977,blat.proc3825160.chain_981,blat.proc3825160.chain_983	9
scaffold_21	spliced_intron	7508102	7508305	-	asmbl_27835	none	STRG.24283.1,blat.proc3825160.chain_1432	2	STRG.24283.2,Trinity_GG_13549_c0_g1_i1,blat.proc3825160.chain_1433	3
scaffold_4	ends_in_intron	17068749	17068749	+	asmbl_42032	none	Trinity_GG_20223_c0_g1_i2	1	STRG.5304.1,blat.proc3825166.chain_1607	2
scaffold_2	retained_intron	5183182	5183574	-	asmbl_23132	none	STRG.1929.1,blat.proc3825148.chain_1965	2	blat.proc3825148.chain_1967	1
scaffold_11	alt_acceptor	14588382	14588383	+	asmbl_6095	none	STRG.14259.1,blat.proc3825170.chain_2703	2	STRG.14259.2,blat.proc3825170.chain_2699,blat.proc3825170.chain_2702	3
scaffold_2	alt_acceptor	9322568	9322569	-	asmbl_23383	none	STRG.2178.2,Trinity_GG_1187_c1_g1_i2,blat.proc3825148.chain_2159,blat.proc3825148.chain_2161	4	STRG.2178.4,blat.proc3825148.chain_2158	2
scaffold_23	retained_exon	6988872	6988988	-	asmbl_30999	none	blat.proc3825160.chain_3168	1	STRG.26022.3	1
scaffold_19	spliced_intron	8805742	8805900	+	asmbl_21557	none	STRG.22329.4	1	STRG.22329.3	1
scaffold_25	ends_in_intron	9290694	9290694	+	asmbl_33806	none	blat.proc3825178.chain_869	1	STRG.27744.1,blat.proc3825178.chain_868	2
scaffold_16	ends_in_intron	4658014	4658014	+	asmbl_16196	none	blat.proc3825174.chain_139	1	STRG.19251.1,STRG.19251.2,blat.proc3825174.chain_136,blat.proc3825174.chain_138	4
scaffold_5	starts_in_intron	6324089	6324089	-	asmbl_44091	none	blat.proc3825150.chain_2172,blat.proc3825150.chain_2173	2	STRG.6044.2	1
scaffold_3	retained_intron	7917853	7917894	-	asmbl_39001,asmbl_39002	none	blat.proc3825148.chain_3254,blat.proc3825148.chain_3255	2	STRG.3377.1	1
scaffold_2	starts_in_intron	16304839	16304839	+	asmbl_25120	none	Trinity_GG_18748_c0_g1_i2,blat.proc3825164.chain_2820	2	STRG.2563.1,blat.proc3825164.chain_2819	2
scaffold_19	alt_acceptor	12492151	12492152	+	asmbl_21808,asmbl_21813	none	STRG.22590.1,STRG.22590.5,blat.proc3825174.chain_3626	3	STRG.22590.3,STRG.22590.4,blat.proc3825174.chain_3624,blat.proc3825174.chain_3625	4
scaffold_5	retained_intron	6734217	6734431	+	asmbl_45447,asmbl_45449	none	STRG.6078.1,STRG.6078.3,blat.proc3825166.chain_2281	3	STRG.6078.2,blat.proc3825166.chain_2282	2
scaffold_10	alt_acceptor	4051045	4051046	+	asmbl_3104	none	STRG.12245.2	1	STRG.12245.1,Trinity_GG_24107_c0_g1_i1,Trinity_GG_24107_c0_g1_i2,Trinity_GG_24107_c0_g1_i3,blat.proc3825170.chain_953,blat.proc3825170.chain_954,blat.proc3825170.chain_955	7
scaffold_10	alt_acceptor	3774879	3774880	-	asmbl_4227	none	STRG.12210.1,blat.proc3825154.chain_775	2	STRG.12210.2	1
scaffold_6	starts_in_intron	13070297	13070297	+	asmbl_47470	none	blat.proc3825168.chain_542	1	STRG.8064.1,blat.proc3825168.chain_541	2
scaffold_28	alt_acceptor	3167309	3167310	+	asmbl_37451	none	STRG.29529.2	1	STRG.29529.3	1
scaffold_28	spliced_intron	3167478	3167541	+	asmbl_37453	none	blat.proc3825162.chain_2706	1	STRG.29529.2,STRG.29529.3	2
scaffold_1	retained_intron	8643816	8644313	-	asmbl_467,asmbl_469	none	blat.proc3825148.chain_581,blat.proc3825148.chain_584	2	STRG.568.1,blat.proc3825148.chain_580,blat.proc3825148.chain_582,blat.proc3825148.chain_585,blat.proc3825148.chain_586	5
scaffold_3	skipped_exon	19802510	19803682	+	asmbl_40773,asmbl_40774,asmbl_40775	none	STRG.4097.2,STRG.4097.3,STRG.4097.4	3	STRG.4097.1,blat.proc3825166.chain_568	2
scaffold_6	alt_donor	2819552	2819553	-	asmbl_48163	none	STRG.7274.1,blat.proc3825150.chain_3326	2	blat.proc3825150.chain_3327	1
scaffold_19	skipped_exon	6407454	6409048	-	asmbl_22213	none	STRG.22169.1,blat.proc3825158.chain_3002	2	STRG.22169.3,blat.proc3825158.chain_3003,blat.proc3825158.chain_3005	3
scaffold_12	alternate_exon	14291833	14292199	-	asmbl_9009	none	STRG.15271.2	1	STRG.15271.3,blat.proc3825156.chain_66,blat.proc3825156.chain_67	3
scaffold_13	spliced_intron	6628167	6628496	-	asmbl_9811	none	Trinity_GG_8986_c0_g1_i4,blat.proc3825156.chain_867	2	Trinity_GG_8986_c0_g1_i3,blat.proc3825156.chain_868	2
scaffold_11	retained_intron	7924769	7925337	+	asmbl_5697,asmbl_5699	none	STRG.13804.2,STRG.13804.3,Trinity_GG_24903_c0_g1_i4,blat.proc3825170.chain_2322	4	STRG.13804.5,STRG.13804.6,Trinity_GG_24903_c0_g1_i2,blat.proc3825170.chain_2323	4
scaffold_28	skipped_exon	9268494	9269691	+	asmbl_37778	none	STRG.29970.1,Trinity_GG_33883_c0_g1_i2,blat.proc3825178.chain_3088	3	STRG.29970.2	1
scaffold_8	alternate_exon	15684124	15684691	-	asmbl_52338	none	Trinity_GG_5873_c0_g1_i1,blat.proc3825152.chain_2799	2	STRG.10571.2,Trinity_GG_5873_c0_g1_i2,blat.proc3825152.chain_2800	3
scaffold_14	alternate_exon	3160912	3161006	+	asmbl_11921	none	blat.proc3825172.chain_1609	1	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2
scaffold_10	ends_in_intron	2680107	2680107	+	asmbl_2997	none	blat.proc3825170.chain_830	1	STRG.12084.1,blat.proc3825170.chain_828	2
scaffold_2	retained_intron	14279595	14279835	+	asmbl_24898,asmbl_24901	none	STRG.2428.4,blat.proc3825164.chain_2596	2	STRG.2428.1,STRG.2428.2,STRG.2428.3,blat.proc3825164.chain_2593	4
scaffold_16	retained_intron	125643	125887	+	asmbl_15999	none	Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3684	2	STRG.19007.1,STRG.19007.4,Trinity_GG_27742_c0_g1_i1,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3682,blat.proc3825172.chain_3683	6
scaffold_23	ends_in_intron	1195671	1195671	+	asmbl_31316	none	blat.proc3825176.chain_2590	1	STRG.25599.1,blat.proc3825176.chain_2589,blat.proc3825176.chain_2591	3
scaffold_21	retained_exon	1075691	1075770	+	asmbl_28325	none	STRG.23789.1,blat.proc3825176.chain_923	2	STRG.23789.2	1
scaffold_26	retained_intron	5489603	5489761	+	asmbl_35000	none	STRG.28257.4,blat.proc3825178.chain_1370	2	blat.proc3825178.chain_1371	1
scaffold_20	alternate_exon	2760281	2760353	-	asmbl_25672	none	STRG.23018.1	1	STRG.23018.2,STRG.23018.3	2
scaffold_3	alternate_exon	3323909	3324826	-	asmbl_38774	none	blat.proc3825148.chain_2946	1	blat.proc3825148.chain_2947	1
scaffold_14	skipped_exon	151364	151904	-	asmbl_12778,asmbl_12780	none	STRG.16711.2,STRG.16711.3,blat.proc3825156.chain_1521	3	STRG.16711.6,blat.proc3825156.chain_1518	2
scaffold_13	retained_intron	7935604	7935878	-	asmbl_9914,asmbl_9918,asmbl_9919	none	STRG.16070.2,STRG.16070.3,STRG.16070.4,blat.proc3825156.chain_874	4	STRG.16070.1,blat.proc3825156.chain_875,blat.proc3825156.chain_876,blat.proc3825156.chain_877,blat.proc3825156.chain_878	5
scaffold_7	retained_exon	8296155	8296440	-	asmbl_50993	none	STRG.9066.3,blat.proc3825152.chain_1453	2	STRG.9066.4,blat.proc3825152.chain_1454	2
scaffold_6	alt_donor	4713214	4713215	+	asmbl_46898,asmbl_46899	none	STRG.7460.2,STRG.7460.4,Trinity_GG_21386_c0_g1_i1,Trinity_GG_21386_c0_g1_i3,blat.proc3825166.chain_3643,blat.proc3825166.chain_3645	6	STRG.7460.1,Trinity_GG_21386_c0_g1_i2,blat.proc3825166.chain_3644	3
scaffold_2	alt_acceptor	7827162	7827163	-	asmbl_23283,asmbl_23285	none	STRG.2078.2,Trinity_GG_1152_c0_g1_i5,blat.proc3825148.chain_2093	3	STRG.2078.1,Trinity_GG_1152_c0_g1_i2,Trinity_GG_1152_c0_g1_i3,blat.proc3825148.chain_2094,blat.proc3825148.chain_2095	5
scaffold_7	alternate_exon	2582647	2582685	+	asmbl_49657	none	STRG.8699.1	1	STRG.8699.2,Trinity_GG_22094_c0_g1_i1,blat.proc3825168.chain_1182	3
scaffold_300	alternate_exon	1040	1706	+	asmbl_40904	none	STRG.30272.2	1	blat.proc3825178.chain_3364	1
scaffold_1	alternate_exon	12167434	12168088	+	asmbl_2185	none	STRG.838.1	1	STRG.838.2,blat.proc3825164.chain_1006,blat.proc3825164.chain_1008	3
scaffold_1	retained_intron	17725702	17726002	+	asmbl_2531	none	STRG.1244.2	1	STRG.1244.1,Trinity_GG_18025_c0_g1_i1,Trinity_GG_18025_c0_g1_i2,Trinity_GG_18025_c0_g1_i3,blat.proc3825164.chain_1364,blat.proc3825164.chain_1365,blat.proc3825164.chain_1366	7
scaffold_10	starts_in_intron	7838871	7838871	+	asmbl_3307	none	blat.proc3825170.chain_1209	1	STRG.12576.1	1
scaffold_23	ends_in_intron	6688724	6688724	+	asmbl_31647,asmbl_31649	none	STRG.26003.2,blat.proc3825176.chain_2933	2	blat.proc3825176.chain_2935	1
scaffold_28	alt_acceptor	6515507	6515508	-	asmbl_38347	none	STRG.29749.2	1	blat.proc3825162.chain_2874	1
scaffold_18	alt_donor	5985312	5985313	+	asmbl_20645	none	blat.proc3825174.chain_2287	1	blat.proc3825174.chain_2286,blat.proc3825174.chain_2288,blat.proc3825174.chain_2290,blat.proc3825174.chain_2292	4
scaffold_10	alternate_exon	4910684	4911435	+	asmbl_3132	none	STRG.12312.3	1	STRG.12313.1,blat.proc3825170.chain_1005	2
scaffold_17	retained_intron	8317665	8317809	+	asmbl_18964,asmbl_18966,asmbl_18973	none	STRG.20456.1,STRG.20456.2,blat.proc3825174.chain_1202,blat.proc3825174.chain_1205,blat.proc3825174.chain_1206	5	STRG.20456.3,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1203	7
scaffold_20	alt_acceptor	4374682	4374683	+	asmbl_26582	none	STRG.23122.2	1	STRG.23122.1	1
scaffold_17	ends_in_intron	1303608	1303608	-	asmbl_17697,asmbl_17698,asmbl_17699,asmbl_17700	none	blat.proc3825158.chain_1029,blat.proc3825158.chain_1030,blat.proc3825158.chain_1031,blat.proc3825158.chain_1035	4	STRG.19975.1,STRG.19975.2,blat.proc3825158.chain_1032,blat.proc3825158.chain_1034	4
scaffold_22	alt_acceptor	4578376	4578377	+	asmbl_30024	none	STRG.24887.3,blat.proc3825176.chain_2005	2	STRG.24887.1,STRG.24887.2,blat.proc3825176.chain_2003,blat.proc3825176.chain_2004	4
scaffold_15	starts_in_intron	5320769	5320769	-	asmbl_14196	none	STRG.18225.1,blat.proc3825156.chain_3082	2	STRG.18225.2,Trinity_GG_10261_c0_g1_i2,blat.proc3825156.chain_3083,blat.proc3825156.chain_3084,blat.proc3825156.chain_3085	5
scaffold_27	alternate_exon	8934407	8934538	-	asmbl_37122	none	STRG.29138.2	1	STRG.29138.1	1
scaffold_10	starts_in_intron	11581265	11581265	+	asmbl_3470	none	Trinity_GG_24369_c1_g1_i1,blat.proc3825170.chain_1399	2	blat.proc3825170.chain_1398	1
scaffold_27	alternate_exon	382158	383179	-	asmbl_36680	none	STRG.28567.4,Trinity_GG_15949_c1_g1_i4,blat.proc3825162.chain_1734,blat.proc3825162.chain_1736	4	STRG.28567.1,blat.proc3825162.chain_1731	2
scaffold_19	retained_intron	10302844	10303671	+	asmbl_21646,asmbl_21647	none	STRG.22416.2,blat.proc3825174.chain_3425	2	STRG.22416.4,Trinity_GG_29710_c0_g1_i3,blat.proc3825174.chain_3426	3
scaffold_11	skipped_exon	9829435	9831678	+	asmbl_5909	none	STRG.14008.2,blat.proc3825170.chain_2556	2	STRG.14008.4,blat.proc3825170.chain_2565	2
scaffold_12	alt_acceptor	3693559	3693560	+	asmbl_7570	none	STRG.14576.2	1	STRG.14576.1,Trinity_GG_25367_c0_g1_i2,blat.proc3825170.chain_3147	3
scaffold_13	alternate_exon	5281877	5281955	-	asmbl_9682	none	STRG.15825.1,Trinity_GG_8886_c0_g1_i1,blat.proc3825156.chain_692	3	STRG.15825.2	1
scaffold_17	alt_donor	6214583	6214584	+	asmbl_18842	none	STRG.20301.1,Trinity_GG_28428_c0_g1_i2,blat.proc3825174.chain_1135	3	STRG.20301.2	1
scaffold_24	alternate_exon	9084956	9087625	+	asmbl_32502	none	STRG.26951.3	1	STRG.26951.4,blat.proc3825178.chain_160,blat.proc3825178.chain_161,blat.proc3825178.chain_162	4
scaffold_22	ends_in_intron	6130439	6130439	+	asmbl_30098,asmbl_30106	none	Trinity_GG_31147_c0_g1_i1,blat.proc3825176.chain_2121,blat.proc3825176.chain_2122	3	STRG.24968.7,Trinity_GG_31147_c0_g1_i8,blat.proc3825176.chain_2124	3
scaffold_9	retained_exon	17743057	17743120	+	asmbl_54639,asmbl_54640,asmbl_54641	none	STRG.11863.1,blat.proc3825170.chain_563,blat.proc3825170.chain_565,blat.proc3825170.chain_567	4	STRG.11863.2,STRG.11863.3,blat.proc3825170.chain_564	3
scaffold_16	retained_exon	7227816	7228463	-	asmbl_17173,asmbl_17176	none	STRG.19399.1,STRG.19399.2	2	STRG.19399.3	1
scaffold_4	ends_in_intron	6188551	6188551	-	asmbl_42663,asmbl_42664	none	STRG.4491.2,blat.proc3825150.chain_679	2	STRG.4491.1,Trinity_GG_2477_c0_g1_i1,blat.proc3825150.chain_677	3
scaffold_18	retained_intron	5583163	5583302	+	asmbl_20588	none	STRG.21310.1,Trinity_GG_29048_c0_g1_i1,Trinity_GG_29048_c0_g1_i2,Trinity_GG_29048_c1_g1_i1,blat.proc3825174.chain_2260,blat.proc3825174.chain_2261,blat.proc3825174.chain_2262	7	STRG.21310.2	1
scaffold_11	alternate_exon	6254551	6258655	+	asmbl_5619	none	STRG.13692.4,Trinity_GG_24860_c0_g1_i7,blat.proc3825170.chain_2238,blat.proc3825170.chain_2241	4	STRG.13692.5	1
scaffold_23	retained_intron	6632661	6632755	+	asmbl_31638,asmbl_31640	none	STRG.26012.1,blat.proc3825176.chain_2898	2	STRG.26012.2,blat.proc3825176.chain_2894,blat.proc3825176.chain_2895,blat.proc3825176.chain_2896,blat.proc3825176.chain_2897	5
scaffold_9	alt_donor	12113015	12113016	+	asmbl_54414	none	blat.proc3825170.chain_368	1	STRG.11537.3,blat.proc3825170.chain_369	2
scaffold_2	spliced_intron	4687374	4687408	-	asmbl_23087,asmbl_23088	none	STRG.1889.1,STRG.1889.3	2	STRG.1889.2	1
scaffold_5	ends_in_intron	10541035	10541035	+	asmbl_45682	none	Trinity_GG_20774_c0_g1_i2,blat.proc3825166.chain_2559	2	STRG.6343.1,STRG.6343.2,Trinity_GG_20774_c0_g1_i1,blat.proc3825166.chain_2558	4
scaffold_23	retained_intron	5303670	5303795	+	asmbl_31554,asmbl_31556	none	STRG.25908.1,STRG.25908.2,Trinity_GG_31605_c0_g1_i1,Trinity_GG_31605_c0_g1_i2,blat.proc3825176.chain_2848,blat.proc3825176.chain_2849	6	STRG.25908.3,Trinity_GG_31605_c0_g1_i3,Trinity_GG_31605_c0_g1_i5,blat.proc3825176.chain_2847,blat.proc3825176.chain_2851	5
scaffold_11	spliced_intron	1982041	1982111	-	asmbl_6459	none	STRG.13359.3,blat.proc3825154.chain_1935	2	STRG.13359.1,STRG.13359.2,blat.proc3825154.chain_1934	3
scaffold_6	retained_intron	17672463	17672607	+	asmbl_47772,asmbl_47773,asmbl_47774,asmbl_47775	none	STRG.8462.3,Trinity_GG_21933_c0_g1_i2,Trinity_GG_21933_c0_g1_i6,Trinity_GG_21933_c0_g1_i7,blat.proc3825168.chain_865,blat.proc3825168.chain_867,blat.proc3825168.chain_868,blat.proc3825168.chain_871	8	STRG.8462.1,STRG.8462.2,Trinity_GG_21933_c0_g1_i5,blat.proc3825168.chain_866,blat.proc3825168.chain_869	5
scaffold_17	spliced_intron	6808283	6808733	+	asmbl_18879	none	STRG.20335.3	1	STRG.20335.2,Trinity_GG_28412_c2_g1_i1,blat.proc3825174.chain_1114	3
scaffold_17	alt_acceptor	13196206	13196207	-	asmbl_18360,asmbl_18362,asmbl_18363	none	STRG.20817.2,STRG.20817.3,blat.proc3825158.chain_1826,blat.proc3825158.chain_1827,blat.proc3825158.chain_1829	5	STRG.20817.1,blat.proc3825158.chain_1830	2
scaffold_16	retained_intron	14662578	14662669	-	asmbl_17490	none	blat.proc3825158.chain_907	1	STRG.19865.1,STRG.19865.2,blat.proc3825158.chain_908	3
scaffold_3	alt_donor	14370813	14370814	-	asmbl_39369	none	STRG.3776.1,Trinity_GG_2078_c0_g1_i1,blat.proc3825148.chain_3673	3	STRG.3776.2	1
scaffold_6	retained_intron	14900185	14900520	+	asmbl_47645	none	STRG.8266.1,Trinity_GG_21865_c0_g1_i3,blat.proc3825168.chain_751	3	STRG.8266.3,blat.proc3825168.chain_753	2
scaffold_14	alt_acceptor	8707815	8707816	+	asmbl_12265	none	STRG.17309.2,blat.proc3825172.chain_2087	2	STRG.17309.1	1
scaffold_3	spliced_intron	6183517	6183564	-	asmbl_38915	none	STRG.3266.5	1	blat.proc3825148.chain_3121,blat.proc3825148.chain_3123	2
scaffold_11	retained_intron	6952172	6952274	-	asmbl_6748,asmbl_6749	none	STRG.13721.3,blat.proc3825154.chain_2294,blat.proc3825154.chain_2296	3	STRG.13721.1,STRG.13721.2,blat.proc3825154.chain_2295,blat.proc3825154.chain_2297,blat.proc3825154.chain_2298	5
scaffold_23	skipped_exon	2633997	2635130	+	asmbl_31411	none	STRG.25731.3	1	STRG.25731.1,STRG.25731.2,STRG.25731.4	3
scaffold_26	alt_donor	5482972	5482973	+	asmbl_34995,asmbl_34997	none	STRG.28252.2,STRG.28252.4	2	STRG.28252.1,STRG.28252.3	2
scaffold_15	alternate_exon	12435953	12436772	+	asmbl_15572	none	blat.proc3825172.chain_3339	1	STRG.18701.1,blat.proc3825172.chain_3343	2
scaffold_6	alt_donor	18834792	18834793	+	asmbl_47857	none	STRG.8556.3	1	STRG.8556.1,STRG.8556.2,blat.proc3825168.chain_960,blat.proc3825168.chain_961,blat.proc3825168.chain_962,blat.proc3825168.chain_963	6
scaffold_19	alternate_exon	5615804	5615884	-	asmbl_22174	none	STRG.22127.2	1	STRG.22127.1,blat.proc3825158.chain_2966	2
scaffold_25	spliced_intron	3712653	3712743	-	asmbl_34149	none	STRG.27321.1,blat.proc3825162.chain_688	2	blat.proc3825162.chain_689	1
scaffold_10	ends_in_intron	13771901	13771901	-	asmbl_4931	none	blat.proc3825154.chain_1609	1	STRG.12971.1,blat.proc3825154.chain_1610,blat.proc3825154.chain_1611	3
scaffold_10	alternate_exon	784991	785464	+	asmbl_2867	none	STRG.11971.8	1	blat.proc3825170.chain_654,blat.proc3825170.chain_655,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	5
scaffold_5	alt_acceptor	17992935	17992936	+	asmbl_46201	none	STRG.6950.2	1	STRG.6950.1,blat.proc3825166.chain_3061	2
scaffold_1	starts_in_intron	11571894	11571894	-	asmbl_637,asmbl_638	none	blat.proc3825148.chain_745,blat.proc3825148.chain_746	2	STRG.767.1,STRG.767.2,blat.proc3825148.chain_743,blat.proc3825148.chain_747	4
scaffold_23	alt_acceptor	2590645	2590646	-	asmbl_30747	none	blat.proc3825160.chain_2779	1	STRG.25725.1,STRG.25725.2,blat.proc3825160.chain_2774,blat.proc3825160.chain_2777	4
scaffold_20	alt_donor	11097516	11097517	+	asmbl_27010	none	STRG.23628.1,blat.proc3825176.chain_814	2	STRG.23628.2,blat.proc3825176.chain_813	2
scaffold_10	starts_in_intron	14838926	14838926	-	asmbl_4964	none	STRG.13031.1	1	STRG.13031.2,blat.proc3825154.chain_1652	2
scaffold_7	starts_in_intron	8507408	8507408	+	asmbl_50005,asmbl_50006	none	blat.proc3825168.chain_1605,blat.proc3825168.chain_1609	2	STRG.9078.1,STRG.9078.2,STRG.9078.3,blat.proc3825168.chain_1604,blat.proc3825168.chain_1607	5
scaffold_2	alternate_exon	6083944	6084270	-	asmbl_23174	none	STRG.1980.2,Trinity_GG_1051_c0_g1_i5,blat.proc3825148.chain_1870	3	STRG.1980.1,Trinity_GG_1051_c0_g1_i2,blat.proc3825148.chain_1868	3
scaffold_87	alt_donor	14483	14484	+	asmbl_53728	none	STRG.30146.5	1	STRG.30146.3,STRG.30146.4	2
scaffold_17	alt_donor	1294192	1294193	-	asmbl_17688	none	STRG.19965.1,Trinity_GG_11194_c0_g1_i1,blat.proc3825158.chain_1000	3	STRG.19965.2,blat.proc3825158.chain_999	2
scaffold_322	spliced_intron	608	748	+	asmbl_40963	none	STRG.30276.1	1	Trinity_GG_34074_c1_g1_i4,Trinity_GG_34184_c0_g1_i4,blat.proc3825178.chain_3552	3
scaffold_13	alt_donor	7014445	7014446	-	asmbl_9837	none	blat.proc3825156.chain_793	1	STRG.15991.2	1
scaffold_23	starts_in_intron	1738824	1738824	+	asmbl_31355	none	blat.proc3825176.chain_2571	1	blat.proc3825176.chain_2570,blat.proc3825176.chain_2572,blat.proc3825176.chain_2573	3
scaffold_27	ends_in_intron	160293	160293	-	asmbl_36654	none	STRG.28548.2	1	STRG.28548.1,Trinity_GG_15971_c0_g1_i1,blat.proc3825162.chain_1776	3
scaffold_2	retained_intron	5202056	5202363	+	asmbl_24399	none	STRG.1940.4,blat.proc3825164.chain_2050	2	STRG.1940.1,STRG.1940.2,STRG.1940.3,Trinity_GG_18384_c0_g1_i3,Trinity_GG_18384_c0_g1_i4,blat.proc3825164.chain_2048,blat.proc3825164.chain_2049	7
scaffold_25	alternate_exon	2145556	2145700	+	asmbl_33388	none	STRG.27211.2	1	STRG.27211.1,blat.proc3825178.chain_335	2
scaffold_16	skipped_exon	325505	325750	-	asmbl_16857,asmbl_16860,asmbl_16861	none	STRG.19029.2,blat.proc3825158.chain_168,blat.proc3825158.chain_171	3	STRG.19029.1,blat.proc3825158.chain_167,blat.proc3825158.chain_169,blat.proc3825158.chain_170,blat.proc3825158.chain_172	5
scaffold_4	retained_intron	3211226	3211758	-	asmbl_42409	none	STRG.4244.1,Trinity_GG_2318_c0_g1_i2,Trinity_GG_2318_c0_g1_i3,blat.proc3825150.chain_387,blat.proc3825150.chain_388	5	STRG.4244.2	1
scaffold_8	alt_acceptor	15163970	15163971	-	asmbl_52326	none	STRG.10547.1,blat.proc3825152.chain_2788	2	blat.proc3825152.chain_2787	1
scaffold_18	alternate_exon	7948314	7948431	-	asmbl_19990,asmbl_19993	none	STRG.21494.1,STRG.21494.3,blat.proc3825158.chain_2402	3	STRG.21494.4,blat.proc3825158.chain_2404	2
scaffold_6	retained_intron	4962197	4962323	-	asmbl_48375	none	blat.proc3825150.chain_3663	1	blat.proc3825150.chain_3661,blat.proc3825150.chain_3662	2
scaffold_18	retained_exon	3917647	3918019	-	asmbl_19782	none	blat.proc3825158.chain_2160	1	STRG.21203.4	1
scaffold_19	ends_in_intron	1132983	1132983	+	asmbl_21233	none	blat.proc3825174.chain_2934	1	STRG.21901.1,blat.proc3825174.chain_2933	2
scaffold_6	starts_in_intron	16269134	16269134	+	asmbl_47690	none	Trinity_GG_21898_c0_g2_i1,blat.proc3825168.chain_804	2	STRG.8347.1,blat.proc3825168.chain_803	2
scaffold_27	alt_acceptor	9863272	9863273	+	asmbl_36532	none	STRG.29209.2,blat.proc3825178.chain_2420	2	STRG.29209.1,blat.proc3825178.chain_2421	2
scaffold_2	spliced_intron	6350944	6351046	-	asmbl_23196	none	STRG.2001.2	1	Trinity_GG_1061_c0_g1_i2,blat.proc3825148.chain_1894	2
scaffold_19	retained_intron	12819130	12819507	-	asmbl_22545,asmbl_22546,asmbl_22547	none	STRG.22609.2,Trinity_GG_12585_c0_g1_i15,blat.proc3825158.chain_3408,blat.proc3825158.chain_3411,blat.proc3825158.chain_3413,blat.proc3825158.chain_3415	6	STRG.22609.1,Trinity_GG_12585_c0_g1_i7,blat.proc3825158.chain_3409,blat.proc3825158.chain_3410,blat.proc3825158.chain_3414	5
scaffold_27	spliced_intron	381931	382927	-	asmbl_36682,asmbl_36683	none	STRG.28567.3,STRG.28567.5,blat.proc3825162.chain_1733,blat.proc3825162.chain_1735	4	STRG.28567.2,Trinity_GG_15949_c1_g1_i4,blat.proc3825162.chain_1732,blat.proc3825162.chain_1734	4
scaffold_8	skipped_exon	6809136	6809444	-	asmbl_51888	none	STRG.10044.2,blat.proc3825152.chain_2307	2	STRG.10044.1,STRG.10044.3,blat.proc3825152.chain_2305	3
scaffold_3	starts_in_intron	5753086	5753086	+	asmbl_40079	none	Trinity_GG_19095_c0_g1_i3,blat.proc3825164.chain_3411	2	STRG.3240.1,STRG.3240.3,Trinity_GG_19095_c0_g1_i4,blat.proc3825164.chain_3412	4
scaffold_20	starts_in_intron	4481855	4481855	-	asmbl_25738,asmbl_25740	none	STRG.23127.4,blat.proc3825160.chain_171	2	STRG.23127.1,blat.proc3825160.chain_168	2
scaffold_15	ends_in_intron	13321008	13321008	+	asmbl_15632	none	Trinity_GG_27599_c0_g1_i14,blat.proc3825172.chain_3391	2	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	14
scaffold_21	spliced_intron	407848	408231	-	asmbl_27310,asmbl_27311,asmbl_27316	none	STRG.23739.1,Trinity_GG_13230_c0_g1_i1,Trinity_GG_13230_c0_g1_i6,Trinity_GG_13230_c0_g1_i8,blat.proc3825160.chain_862,blat.proc3825160.chain_864,blat.proc3825160.chain_868	7	Trinity_GG_13230_c0_g1_i3,Trinity_GG_13230_c0_g1_i5,Trinity_GG_13230_c0_g1_i7,blat.proc3825160.chain_863,blat.proc3825160.chain_866,blat.proc3825160.chain_867	6
scaffold_23	ends_in_intron	2616598	2616598	-	asmbl_30757	none	blat.proc3825160.chain_2927	1	STRG.25729.1,STRG.25729.2,blat.proc3825160.chain_2923,blat.proc3825160.chain_2925,blat.proc3825160.chain_2926,blat.proc3825160.chain_2928	6
scaffold_12	ends_in_intron	16247557	16247557	+	asmbl_8155,asmbl_8156	none	Trinity_GG_25754_c0_g1_i1,Trinity_GG_25754_c0_g1_i2,blat.proc3825172.chain_84,blat.proc3825172.chain_85	4	STRG.15380.1,STRG.15380.2,STRG.15380.3,Trinity_GG_25754_c0_g1_i3,blat.proc3825172.chain_83	5
scaffold_1	spliced_intron	14251914	14252304	-	asmbl_877	none	STRG.1015.2	1	STRG.1015.1,blat.proc3825148.chain_1008	2
scaffold_10	spliced_intron	6757359	6757457	-	asmbl_4500	none	STRG.12506.1,blat.proc3825154.chain_1106	2	blat.proc3825154.chain_1107	1
scaffold_26	starts_in_intron	10094978	10094978	-	asmbl_35809	none	blat.proc3825162.chain_1719	1	STRG.28531.1,STRG.28531.2,Trinity_GG_15947_c0_g1_i3,blat.proc3825162.chain_1716,blat.proc3825162.chain_1717,blat.proc3825162.chain_1718	6
scaffold_6	retained_intron	298817	299072	+	asmbl_46647	none	STRG.7091.1,Trinity_GG_21228_c0_g1_i2,blat.proc3825166.chain_3319	3	STRG.7091.2,STRG.7091.3,Trinity_GG_21228_c0_g1_i3,Trinity_GG_21228_c0_g1_i4,blat.proc3825166.chain_3317,blat.proc3825166.chain_3318	6
scaffold_5	starts_in_intron	5608188	5608188	+	asmbl_45353,asmbl_45354	none	blat.proc3825166.chain_2202,blat.proc3825166.chain_2204	2	STRG.5985.1,STRG.5985.2,blat.proc3825166.chain_2203	3
scaffold_4	retained_intron	16131996	16133361	-	asmbl_43139	none	STRG.5184.1,Trinity_GG_2891_c0_g1_i3,Trinity_GG_2891_c1_g1_i1,Trinity_GG_2891_c2_g1_i1,blat.proc3825150.chain_1344,blat.proc3825150.chain_1345	6	STRG.5184.2,STRG.5184.3	2
scaffold_27	ends_in_intron	4505551	4505551	+	asmbl_36291	none	blat.proc3825178.chain_2108	1	STRG.28902.1	1
scaffold_14	retained_intron	11945131	11945237	+	asmbl_12410	none	Trinity_GG_26949_c0_g1_i2,blat.proc3825172.chain_2264	2	STRG.17536.1,Trinity_GG_26949_c0_g1_i1,blat.proc3825172.chain_2263	3
scaffold_9	retained_intron	571057	571248	+	asmbl_53770	none	STRG.10788.4	1	STRG.10788.3	1
scaffold_25	retained_intron	6303359	6303523	+	asmbl_33607,asmbl_33615,asmbl_33616,asmbl_33617,asmbl_33618	none	STRG.27515.2,blat.proc3825178.chain_555,blat.proc3825178.chain_556,blat.proc3825178.chain_558,blat.proc3825178.chain_559,blat.proc3825178.chain_560	6	STRG.27515.1,blat.proc3825178.chain_557	2
scaffold_15	spliced_intron	13325003	13325087	+	asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15634,asmbl_15635,asmbl_15636	none	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389	8	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	6
scaffold_4	starts_in_intron	17164594	17164594	+	asmbl_42042	none	Trinity_GG_20258_c0_g1_i3	1	STRG.5318.1,STRG.5318.2	2
scaffold_19	spliced_intron	12107159	12107555	-	asmbl_22461	none	STRG.22539.4	1	STRG.22539.3,blat.proc3825158.chain_3193	2
scaffold_13	alt_acceptor	14899036	14899037	-	asmbl_10218	none	STRG.16536.2	1	STRG.16536.1,blat.proc3825156.chain_1359	2
scaffold_15	spliced_intron	2797848	2798115	+	asmbl_15080	none	blat.proc3825172.chain_2741	1	STRG.18067.1,blat.proc3825172.chain_2743	2
scaffold_13	retained_intron	3530974	3531292	+	asmbl_10702	none	blat.proc3825172.chain_361	1	STRG.15676.1,STRG.15676.2,blat.proc3825172.chain_360,blat.proc3825172.chain_362,blat.proc3825172.chain_363,blat.proc3825172.chain_364	6
scaffold_2	retained_exon	8192753	8192867	+	asmbl_24616	none	STRG.2110.1,blat.proc3825164.chain_2284	2	STRG.2110.2,blat.proc3825164.chain_2282	2
scaffold_15	spliced_intron	2434220	2434241	-	asmbl_14002	none	blat.proc3825156.chain_2760	1	Trinity_GG_10089_c0_g1_i1	1
scaffold_20	alt_donor	4377198	4377199	+	asmbl_26586	none	STRG.23125.2,blat.proc3825176.chain_298	2	STRG.23125.1,blat.proc3825176.chain_299	2
scaffold_13	starts_in_intron	8321494	8321494	+	asmbl_11121	none	Trinity_GG_26180_c1_g1_i1,blat.proc3825172.chain_907	2	STRG.16125.1,blat.proc3825172.chain_908	2
scaffold_14	alt_donor	9276860	9276861	-	asmbl_13364,asmbl_13366	none	STRG.17338.2,blat.proc3825156.chain_2202	2	STRG.17338.1,STRG.17338.4,blat.proc3825156.chain_2200,blat.proc3825156.chain_2203,blat.proc3825156.chain_2204	5
scaffold_22	spliced_intron	4408885	4409056	-	asmbl_29257	none	STRG.24858.1,blat.proc3825160.chain_2061	2	Trinity_GG_13906_c0_g1_i2,blat.proc3825160.chain_2062	2
scaffold_13	alt_acceptor	16142776	16142777	+	asmbl_11559	none	blat.proc3825172.chain_1451	1	STRG.16655.1	1
scaffold_6	retained_exon	4999173	4999190	+	asmbl_46905	none	blat.proc3825166.chain_3582	1	STRG.7473.1,blat.proc3825166.chain_3581	2
scaffold_4	retained_intron	14115549	14115636	-	asmbl_43033	none	STRG.5032.2	1	STRG.5032.1,blat.proc3825150.chain_1185	2
scaffold_23	alt_acceptor	6290838	6290839	-	asmbl_30968,asmbl_30971,asmbl_30973	none	STRG.25975.1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192	6	STRG.25975.3,Trinity_GG_14564_c0_g1_i5,blat.proc3825160.chain_3193	3
scaffold_25	skipped_exon	9939292	9940567	-	asmbl_34531	none	STRG.27806.1	1	STRG.27806.2	1
scaffold_12	alternate_exon	13403362	13406730	-	asmbl_8943	none	STRG.15219.3,blat.proc3825156.chain_10	2	STRG.15219.5,blat.proc3825156.chain_12	2
scaffold_2	alt_donor	19373518	19373519	-	asmbl_23865	none	STRG.2806.1,blat.proc3825148.chain_2746	2	STRG.2806.2,blat.proc3825148.chain_2745	2
scaffold_8	starts_in_intron	12728129	12728129	-	asmbl_52222	none	Trinity_GG_5801_c0_g1_i3,blat.proc3825152.chain_2670	2	STRG.10451.1,STRG.10451.2,blat.proc3825152.chain_2671,blat.proc3825152.chain_2672	4
scaffold_21	retained_intron	1653679	1654377	+	asmbl_28347,asmbl_28350	none	Trinity_GG_30526_c0_g1_i7,blat.proc3825176.chain_1056,blat.proc3825176.chain_1059	3	STRG.23819.1,Trinity_GG_30526_c0_g1_i12,blat.proc3825176.chain_1057,blat.proc3825176.chain_1058	4
scaffold_4	starts_in_intron	3383633	3383633	+	asmbl_41195	none	blat.proc3825166.chain_747	1	STRG.4276.1,STRG.4276.2,blat.proc3825166.chain_746,blat.proc3825166.chain_748,blat.proc3825166.chain_749	5
scaffold_16	alt_acceptor	3571338	3571339	-	asmbl_16986,asmbl_16987	none	STRG.19175.1,STRG.19175.2,Trinity_GG_10767_c0_g1_i5,Trinity_GG_10767_c0_g1_i8,blat.proc3825158.chain_305,blat.proc3825158.chain_306	6	STRG.19175.3	1
scaffold_14	alt_donor	15999893	15999894	-	asmbl_13765	none	STRG.17841.1,blat.proc3825156.chain_2641	2	STRG.17841.2	1
scaffold_23	alt_donor	8811513	8811514	+	asmbl_31781	none	STRG.26148.2,blat.proc3825176.chain_3119	2	STRG.26148.1,blat.proc3825176.chain_3122	2
scaffold_2	starts_in_intron	4864388	4864388	-	asmbl_23109	none	blat.proc3825148.chain_1890	1	STRG.1908.1,blat.proc3825148.chain_1888,blat.proc3825148.chain_1889	3
scaffold_2	starts_in_intron	17545318	17545318	+	asmbl_25176	none	blat.proc3825164.chain_2881	1	STRG.2641.1,blat.proc3825164.chain_2882	2
scaffold_28	alternate_exon	2164996	2165021	+	asmbl_37341	none	STRG.29385.2	1	STRG.29385.1,blat.proc3825178.chain_2552	2
scaffold_11	alt_donor	11637402	11637403	+	asmbl_5986,asmbl_5988	none	blat.proc3825170.chain_2635,blat.proc3825170.chain_2640	2	blat.proc3825170.chain_2637	1
scaffold_5	alternate_exon	990449	990573	+	asmbl_45109	none	STRG.5651.1	1	STRG.5651.2,blat.proc3825166.chain_1831	2
scaffold_27	alternate_exon	2830195	2836154	+	asmbl_36126	none	STRG.28768.2,blat.proc3825178.chain_1932	2	Trinity_GG_33233_c0_g1_i2,blat.proc3825178.chain_1935	2
scaffold_15	retained_intron	15413379	15413488	+	asmbl_15776,asmbl_15777,asmbl_15778,asmbl_15781,asmbl_15782,asmbl_15783,asmbl_15785	none	STRG.18953.1,STRG.18953.2,STRG.18953.4,STRG.18953.5,STRG.18953.6,blat.proc3825172.chain_3607,blat.proc3825172.chain_3610,blat.proc3825172.chain_3611,blat.proc3825172.chain_3612	9	STRG.18953.3,STRG.18953.7,blat.proc3825172.chain_3608,blat.proc3825172.chain_3609	4
scaffold_6	alt_donor	11012000	11012001	-	asmbl_48732	none	STRG.7916.4	1	STRG.7916.2,STRG.7916.3,blat.proc3825152.chain_319	3
scaffold_9	retained_exon	9706783	9707334	+	asmbl_54236,asmbl_54237	none	STRG.11349.2,STRG.11349.6,blat.proc3825170.chain_143	3	STRG.11349.1,blat.proc3825170.chain_140,blat.proc3825170.chain_144	3
scaffold_12	spliced_intron	14289469	14289681	-	asmbl_9004,asmbl_9006,asmbl_9009	none	STRG.15271.1,STRG.15271.2,STRG.15271.3,blat.proc3825156.chain_64,blat.proc3825156.chain_67	5	Trinity_GG_8552_c0_g1_i1,blat.proc3825156.chain_65,blat.proc3825156.chain_66	3
scaffold_17	alternate_exon	12199388	12200198	+	asmbl_19276	none	STRG.20759.2,Trinity_GG_28712_c2_g1_i1,blat.proc3825174.chain_1666	3	STRG.20759.3,blat.proc3825174.chain_1661	2
scaffold_21	alternate_exon	6512972	6513681	+	asmbl_28661	none	blat.proc3825176.chain_1398	1	blat.proc3825176.chain_1396	1
scaffold_4	retained_intron	2611815	2611924	-	asmbl_42395	none	STRG.4221.2,blat.proc3825150.chain_439	2	STRG.4221.1,blat.proc3825150.chain_438	2
scaffold_5	alt_acceptor	10298210	10298211	-	asmbl_44337,asmbl_44340	none	STRG.6332.1,blat.proc3825150.chain_2557,blat.proc3825150.chain_2558	3	STRG.6332.2	1
scaffold_4	alternate_exon	18758543	18758575	-	asmbl_43386	none	STRG.5465.2	1	STRG.5465.1,STRG.5465.3	2
scaffold_11	starts_in_intron	17069561	17069561	-	asmbl_7243	none	Trinity_GG_7975_c1_g1_i1,blat.proc3825154.chain_2802	2	STRG.14371.1,STRG.14371.2,STRG.14371.3,blat.proc3825154.chain_2803,blat.proc3825154.chain_2804,blat.proc3825154.chain_2805,blat.proc3825154.chain_2806	7
scaffold_16	skipped_exon	7228464	7230994	-	asmbl_17176	none	STRG.19399.1	1	STRG.19399.2,STRG.19399.3	2
scaffold_18	alt_acceptor	2061694	2061695	-	asmbl_19700	none	STRG.21099.1,Trinity_GG_11826_c0_g1_i2,blat.proc3825158.chain_2071	3	STRG.21099.2,Trinity_GG_11826_c0_g1_i1,blat.proc3825158.chain_2070	3
scaffold_3	starts_in_intron	16932037	16932037	-	asmbl_39520	none	blat.proc3825150.chain_58	1	STRG.3938.1,blat.proc3825150.chain_60,blat.proc3825150.chain_61	3
scaffold_22	starts_in_intron	7003348	7003348	+	asmbl_30149	none	Trinity_GG_31108_c0_g1_i2	1	STRG.25031.1,blat.proc3825176.chain_2061	2
scaffold_5	retained_intron	11991739	11992176	-	asmbl_44431,asmbl_44432,asmbl_44435	none	STRG.6453.2,STRG.6453.5,blat.proc3825150.chain_2615	3	STRG.6453.8,STRG.6453.9	2
scaffold_3	starts_in_intron	7635966	7635966	-	asmbl_38974	none	blat.proc3825148.chain_3231	1	STRG.3356.1,STRG.3356.2,blat.proc3825148.chain_3232	3
scaffold_16	retained_exon	10977144	10977218	-	asmbl_17324	none	STRG.19645.2	1	blat.proc3825158.chain_661	1
scaffold_23	ends_in_intron	10974588	10974588	+	asmbl_31896	none	blat.proc3825176.chain_3186	1	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_5	alternate_exon	10890321	10892725	-	asmbl_44386	none	blat.proc3825150.chain_2463	1	blat.proc3825150.chain_2464	1
scaffold_4	alt_donor	14618979	14618980	+	asmbl_41897	none	STRG.5084.1,blat.proc3825166.chain_1511	2	STRG.5084.2	1
scaffold_22	retained_intron	9647011	9647213	+	asmbl_30310	none	STRG.25303.1	1	STRG.25303.2,Trinity_GG_31256_c0_g1_i3,blat.proc3825176.chain_2307	3
scaffold_16	spliced_intron	5445512	5445763	-	asmbl_17103,asmbl_17105	none	STRG.19301.2,STRG.19301.3,Trinity_GG_10851_c0_g1_i2,blat.proc3825158.chain_457	4	STRG.19301.1,blat.proc3825158.chain_456	2
scaffold_7	retained_intron	5928121	5929865	+	asmbl_49829,asmbl_49830	none	STRG.8902.1,STRG.8902.4,Trinity_GG_22209_c0_g1_i3,blat.proc3825168.chain_1373	4	STRG.8902.2,Trinity_GG_22209_c0_g1_i4,blat.proc3825168.chain_1376	3
scaffold_5	spliced_intron	11630546	11631086	-	asmbl_44417,asmbl_44420	none	blat.proc3825150.chain_2641,blat.proc3825150.chain_2642	2	blat.proc3825150.chain_2638,blat.proc3825150.chain_2639,blat.proc3825150.chain_2640	3
scaffold_1	retained_intron	9297058	9297130	+	asmbl_1974	none	Trinity_GG_17708_c0_g1_i5,blat.proc3825164.chain_768	2	STRG.629.1,STRG.629.2,Trinity_GG_17708_c0_g1_i1,Trinity_GG_17708_c0_g1_i2,blat.proc3825164.chain_770,blat.proc3825164.chain_771	6
scaffold_11	ends_in_intron	7023675	7023675	+	asmbl_5642	none	Trinity_GG_24866_c0_g1_i2,blat.proc3825170.chain_2252	2	STRG.13724.1,blat.proc3825170.chain_2253	2
scaffold_10	alternate_exon	9497346	9497379	+	asmbl_3391	none	STRG.12696.1	1	Trinity_GG_24295_c0_g1_i1,blat.proc3825170.chain_1277	2
scaffold_5	retained_intron	12842443	12842549	+	asmbl_45826,asmbl_45827,asmbl_45829	none	STRG.6517.3,STRG.6517.4,Trinity_GG_20807_c0_g1_i2,blat.proc3825166.chain_2621	4	STRG.6517.1,STRG.6517.2,Trinity_GG_20807_c0_g1_i1,blat.proc3825166.chain_2619,blat.proc3825166.chain_2620	5
scaffold_19	retained_intron	8331874	8332032	-	asmbl_22294	none	Trinity_GG_12428_c1_g1_i1,blat.proc3825158.chain_3100	2	STRG.22291.1	1
scaffold_5	starts_in_intron	2558338	2558338	+	asmbl_45182	none	blat.proc3825166.chain_2018	1	STRG.5781.1,blat.proc3825166.chain_2019	2
scaffold_9	skipped_exon	9705515	9707760	+	asmbl_54235,asmbl_54239	none	STRG.11349.1,blat.proc3825170.chain_140,blat.proc3825170.chain_144	3	STRG.11349.2,STRG.11349.6,Trinity_GG_23640_c1_g1_i2,blat.proc3825170.chain_139,blat.proc3825170.chain_143,blat.proc3825170.chain_146	6
scaffold_5	spliced_intron	10314896	10314969	+	asmbl_45675,asmbl_45677	none	STRG.6331.1,Trinity_GG_20769_c0_g1_i1,blat.proc3825166.chain_2552,blat.proc3825166.chain_2553	4	Trinity_GG_20769_c0_g1_i2,blat.proc3825166.chain_2551	2
scaffold_12	alt_acceptor	16401626	16401627	+	asmbl_8171	none	STRG.15402.2,Trinity_GG_25733_c0_g1_i3,blat.proc3825172.chain_44	3	Trinity_GG_25733_c0_g1_i9,blat.proc3825172.chain_42	2
scaffold_9	spliced_intron	637042	637113	+	asmbl_53778	none	STRG.10792.1	1	STRG.10792.2	1
scaffold_11	spliced_intron	7924431	7924529	+	asmbl_5696,asmbl_5699	none	STRG.13804.3,STRG.13804.5,Trinity_GG_24903_c0_g1_i2,blat.proc3825170.chain_2323	4	STRG.13804.2,STRG.13804.6,Trinity_GG_24903_c0_g1_i4,blat.proc3825170.chain_2322	4
scaffold_19	ends_in_intron	1649154	1649154	+	asmbl_21253	none	blat.proc3825174.chain_2969	1	STRG.21917.1,blat.proc3825174.chain_2968	2
scaffold_23	starts_in_intron	7046650	7046650	-	asmbl_31014	none	blat.proc3825160.chain_3126	1	STRG.26031.1,blat.proc3825160.chain_3127,blat.proc3825160.chain_3128	3
scaffold_9	starts_in_intron	5262862	5262862	+	asmbl_54016	none	blat.proc3825168.chain_3651	1	STRG.11119.1,blat.proc3825168.chain_3653	2
scaffold_6	spliced_intron	13726449	13726589	-	asmbl_48944	none	STRG.8122.1,Trinity_GG_4600_c0_g1_i1,blat.proc3825152.chain_512	3	STRG.8122.2,blat.proc3825152.chain_513	2
scaffold_14	retained_intron	8589819	8590023	+	asmbl_12253	none	STRG.17293.2,blat.proc3825172.chain_2008	2	STRG.17293.1,blat.proc3825172.chain_2009	2
scaffold_14	starts_in_intron	3145533	3145533	+	asmbl_11906	none	Trinity_GG_26603_c0_g1_i1,blat.proc3825172.chain_1670	2	STRG.16905.1,Trinity_GG_26603_c0_g1_i2,Trinity_GG_26603_c0_g1_i3,blat.proc3825172.chain_1671,blat.proc3825172.chain_1672	5
scaffold_5	alternate_exon	10525044	10527505	+	asmbl_45679	none	Trinity_GG_20761_c0_g1_i2,blat.proc3825166.chain_2539	2	STRG.6341.1,STRG.6341.2,Trinity_GG_20761_c0_g1_i1,blat.proc3825166.chain_2538	4
scaffold_22	alt_donor	8620834	8620835	+	asmbl_30283	none	Trinity_GG_31273_c0_g1_i1	1	STRG.25214.1	1
scaffold_15	alt_acceptor	11410306	11410307	-	asmbl_14507	none	blat.proc3825156.chain_3445	1	STRG.18616.1,blat.proc3825156.chain_3447,blat.proc3825156.chain_3449	3
scaffold_27	retained_intron	313987	314458	-	asmbl_36657	none	STRG.28557.2,Trinity_GG_15948_c0_g1_i7	2	blat.proc3825162.chain_1725	1
scaffold_17	retained_intron	9533790	9533896	+	asmbl_19107,asmbl_19108	none	Trinity_GG_28562_c0_g1_i3,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	3	STRG.20578.1,STRG.20578.2,STRG.20578.3,STRG.20578.4,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1402	8
scaffold_8	ends_in_intron	9110455	9110455	+	asmbl_53052	none	Trinity_GG_22950_c0_g1_i3,blat.proc3825168.chain_2708	2	STRG.10166.1,Trinity_GG_22950_c0_g1_i1,blat.proc3825168.chain_2709	3
scaffold_26	retained_intron	5294667	5294755	+	asmbl_34975	none	blat.proc3825178.chain_1317	1	STRG.28232.1,Trinity_GG_32911_c0_g1_i3,blat.proc3825178.chain_1316	3
scaffold_6	retained_intron	9093568	9093795	+	asmbl_47205	none	STRG.7789.3	1	STRG.7789.1,STRG.7789.2,blat.proc3825168.chain_248	3
scaffold_26	spliced_intron	4135749	4135855	-	asmbl_35530,asmbl_35531,asmbl_35533,asmbl_35534	none	STRG.28116.1,STRG.28116.2,STRG.28116.3,STRG.28116.4,blat.proc3825162.chain_1393,blat.proc3825162.chain_1395	6	blat.proc3825162.chain_1394	1
scaffold_8	retained_intron	16503452	16503680	-	asmbl_52402,asmbl_52404	none	Trinity_GG_5934_c0_g1_i21,blat.proc3825152.chain_2928,blat.proc3825152.chain_2938	3	STRG.10629.5,STRG.10629.6,Trinity_GG_5934_c0_g1_i2,blat.proc3825152.chain_2937,blat.proc3825152.chain_2941	5
scaffold_14	starts_in_intron	9986093	9986093	+	asmbl_12305	none	blat.proc3825172.chain_2062	1	STRG.17368.1	1
scaffold_17	spliced_intron	8319306	8319398	+	asmbl_18964,asmbl_18965,asmbl_18966,asmbl_18967,asmbl_18968,asmbl_18969,asmbl_18971,asmbl_18972,asmbl_18973	none	STRG.20456.1,STRG.20456.2,STRG.20456.3,STRG.20456.4,STRG.20456.5,STRG.20456.6,blat.proc3825174.chain_1200,blat.proc3825174.chain_1201,blat.proc3825174.chain_1202,blat.proc3825174.chain_1203,blat.proc3825174.chain_1205,blat.proc3825174.chain_1206	12	Trinity_GG_28466_c0_g1_i8,blat.proc3825174.chain_1204	2
scaffold_22	alternate_exon	11343515	11344102	-	asmbl_29665	none	Trinity_GG_14255_c0_g1_i1,blat.proc3825160.chain_2649	2	blat.proc3825160.chain_2648	1
scaffold_7	skipped_exon	13575743	13576051	+	asmbl_50363	none	STRG.9460.2,Trinity_GG_22572_c0_g1_i2,blat.proc3825168.chain_1991	3	STRG.9460.1,Trinity_GG_22572_c0_g1_i1,blat.proc3825168.chain_1990	3
scaffold_15	retained_intron	9313817	9314020	+	asmbl_15387	none	blat.proc3825172.chain_3146	1	STRG.18465.1,blat.proc3825172.chain_3145	2
scaffold_21	alternate_exon	2484565	2484617	-	asmbl_27467,asmbl_27468	none	STRG.23873.1,STRG.23873.4,Trinity_GG_13318_c0_g1_i2,blat.proc3825160.chain_1023	4	STRG.23873.2	1
scaffold_27	ends_in_intron	6592486	6592486	-	asmbl_37062	none	STRG.29029.2,blat.proc3825162.chain_2249	2	STRG.29029.1,blat.proc3825162.chain_2250	2
scaffold_2	starts_in_intron	18707451	18707451	+	asmbl_25231	none	Trinity_GG_18855_c0_g1_i1,blat.proc3825164.chain_2996	2	STRG.2747.1,STRG.2747.2,Trinity_GG_18855_c0_g1_i2,Trinity_GG_18855_c0_g1_i3,blat.proc3825164.chain_2994,blat.proc3825164.chain_2995	6
scaffold_22	starts_in_intron	6960348	6960348	-	asmbl_29352	none	STRG.25024.3	1	STRG.25024.1,STRG.25024.2,STRG.25024.5,blat.proc3825160.chain_2160	4
scaffold_1	ends_in_intron	6318633	6318633	-	asmbl_357	none	blat.proc3825148.chain_335	1	STRG.429.1,blat.proc3825148.chain_334,blat.proc3825148.chain_336	3
scaffold_11	alternate_exon	15797569	15802934	+	asmbl_6130	none	STRG.14320.1	1	STRG.14320.2	1
scaffold_5	alt_acceptor	2166925	2166926	-	asmbl_43875	none	STRG.5754.3	1	STRG.5754.2	1
scaffold_9	ends_in_intron	5709459	5709459	-	asmbl_55026	none	blat.proc3825152.chain_3373	1	STRG.11142.1,blat.proc3825152.chain_3372	2
scaffold_13	retained_intron	16460036	16460303	-	asmbl_10303	none	STRG.16703.2,blat.proc3825156.chain_1486	2	Trinity_GG_9330_c0_g1_i3,blat.proc3825156.chain_1487	2
scaffold_22	alt_donor	7898409	7898410	-	asmbl_29438	none	STRG.25137.1	1	STRG.25137.2,blat.proc3825160.chain_2266	2
scaffold_4	alt_acceptor	19579647	19579648	-	asmbl_43457	none	STRG.5543.3	1	STRG.5543.1,STRG.5543.2,blat.proc3825150.chain_1740,blat.proc3825150.chain_1741,blat.proc3825150.chain_1742,blat.proc3825150.chain_1743	6
scaffold_9	alternate_exon	3665717	3666117	+	asmbl_53909	none	STRG.10971.2	1	STRG.10971.1,Trinity_GG_23413_c0_g1_i4,blat.proc3825168.chain_3495	3
scaffold_8	starts_in_intron	9001219	9001219	+	asmbl_53047	none	blat.proc3825168.chain_2649	1	STRG.10156.1,STRG.10156.2,Trinity_GG_22923_c0_g1_i1,Trinity_GG_22923_c0_g1_i3,blat.proc3825168.chain_2650,blat.proc3825168.chain_2651	6
scaffold_4	alt_acceptor	665728	665729	-	asmbl_42340	none	blat.proc3825150.chain_297	1	STRG.4141.1,blat.proc3825150.chain_298,blat.proc3825150.chain_299	3
scaffold_11	spliced_intron	6254831	6256304	+	asmbl_5621,asmbl_5623,asmbl_5625	none	STRG.13692.1,STRG.13692.2,blat.proc3825170.chain_2239,blat.proc3825170.chain_2242	4	STRG.13692.4,Trinity_GG_24860_c0_g1_i7,blat.proc3825170.chain_2238,blat.proc3825170.chain_2241	4
scaffold_28	ends_in_intron	7275750	7275750	-	asmbl_38388	none	blat.proc3825162.chain_3016	1	STRG.29796.3	1
scaffold_11	retained_intron	8192814	8192909	-	asmbl_6852	none	Trinity_GG_7742_c0_g1_i2,blat.proc3825154.chain_2393	2	STRG.13829.2,Trinity_GG_7742_c0_g1_i1,blat.proc3825154.chain_2394	3
scaffold_11	retained_intron	9020369	9020489	-	asmbl_6904	none	blat.proc3825154.chain_2408	1	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406,blat.proc3825154.chain_2407	5
scaffold_20	alternate_exon	5439254	5441018	+	asmbl_26616	none	STRG.23161.1,Trinity_GG_30091_c0_g1_i1,blat.proc3825176.chain_348	3	STRG.23161.2,Trinity_GG_30091_c0_g1_i3,blat.proc3825176.chain_347	3
scaffold_6	alt_donor	7938426	7938427	-	asmbl_48511,asmbl_48512,asmbl_48516,asmbl_48517	none	STRG.7676.2,STRG.7676.3,blat.proc3825152.chain_69,blat.proc3825152.chain_70	4	STRG.7676.4	1
scaffold_11	ends_in_intron	8313076	8313076	+	asmbl_5746	none	Trinity_GG_24936_c2_g1_i1,blat.proc3825170.chain_2384	2	STRG.13846.1,blat.proc3825170.chain_2381,blat.proc3825170.chain_2382	3
scaffold_27	retained_intron	3063415	3063502	+	asmbl_36177,asmbl_36178,asmbl_36179	none	STRG.28792.2,Trinity_GG_33190_c0_g1_i7,blat.proc3825178.chain_1820,blat.proc3825178.chain_1821,blat.proc3825178.chain_1822,blat.proc3825178.chain_1823	6	STRG.28792.1	1
scaffold_26	spliced_intron	9029889	9029987	+	asmbl_35195	none	STRG.28467.1,blat.proc3825178.chain_1569	2	Trinity_GG_33058_c0_g1_i2,blat.proc3825178.chain_1570	2
scaffold_24	spliced_intron	5948199	5949651	+	asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32262,asmbl_32264,asmbl_32268,asmbl_32269,asmbl_32273,asmbl_32274,asmbl_32276	none	STRG.26675.1,STRG.26675.2,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3672,blat.proc3825176.chain_3674,blat.proc3825176.chain_3675,blat.proc3825176.chain_3677,blat.proc3825176.chain_3678,blat.proc3825176.chain_3679,blat.proc3825176.chain_3680	12	Trinity_GG_32084_c0_g1_i11,blat.proc3825176.chain_3673	2
scaffold_27	retained_exon	6782251	6782466	-	asmbl_37082	none	STRG.29050.3,blat.proc3825162.chain_2278	2	STRG.29050.1,STRG.29050.2,blat.proc3825162.chain_2276,blat.proc3825162.chain_2279	4
scaffold_25	alt_donor	3677689	3677690	+	asmbl_33448	none	STRG.27313.2	1	STRG.27313.1,blat.proc3825178.chain_361	2
scaffold_23	alternate_exon	4899088	4899124	+	asmbl_31532,asmbl_31533,asmbl_31537	none	STRG.25884.1,STRG.25884.4,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817	6	Trinity_GG_31591_c0_g1_i2,blat.proc3825176.chain_2819	2
scaffold_11	alternate_exon	8478185	8478294	+	asmbl_5787	none	Trinity_GG_24888_c0_g1_i1,blat.proc3825170.chain_2290	2	STRG.13864.1,Trinity_GG_24888_c0_g1_i2,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2291,blat.proc3825170.chain_2293	5
scaffold_17	alt_acceptor	3434638	3434639	-	asmbl_17818	none	STRG.20126.2	1	STRG.20126.1	1
scaffold_9	ends_in_intron	8942267	8942267	-	asmbl_55151	none	blat.proc3825152.chain_3428	1	STRG.11280.1,STRG.11280.2,blat.proc3825152.chain_3426,blat.proc3825152.chain_3427	4
scaffold_24	alt_donor	6728237	6728238	-	asmbl_32969	none	blat.proc3825162.chain_98	1	STRG.26723.1,STRG.26723.2,blat.proc3825162.chain_100,blat.proc3825162.chain_95,blat.proc3825162.chain_96,blat.proc3825162.chain_99	6
scaffold_2	retained_exon	2297728	2297862	-	asmbl_22886	none	STRG.1674.4	1	STRG.1674.3	1
scaffold_26	spliced_intron	2253736	2255266	+	asmbl_34734,asmbl_34738	none	STRG.27955.1,STRG.27955.2,blat.proc3825178.chain_1018	3	blat.proc3825178.chain_1017	1
scaffold_12	spliced_intron	7275750	7275862	-	asmbl_8563,asmbl_8564,asmbl_8566	none	STRG.14801.1,STRG.14801.2,Trinity_GG_8260_c0_g1_i1,Trinity_GG_8260_c0_g1_i2,Trinity_GG_8260_c0_g1_i3,blat.proc3825154.chain_3307,blat.proc3825154.chain_3308,blat.proc3825154.chain_3309	8	Trinity_GG_8260_c0_g1_i5,blat.proc3825154.chain_3306	2
scaffold_13	alt_donor	14864377	14864378	-	asmbl_10211,asmbl_10213	none	STRG.16531.3,blat.proc3825156.chain_1363	2	STRG.16531.2,blat.proc3825156.chain_1362	2
scaffold_23	starts_in_intron	4313457	4313457	+	asmbl_31502	none	blat.proc3825176.chain_2774	1	STRG.25852.1,Trinity_GG_31566_c0_g1_i9,blat.proc3825176.chain_2772,blat.proc3825176.chain_2773,blat.proc3825176.chain_2776,blat.proc3825176.chain_2777,blat.proc3825176.chain_2779	7
scaffold_14	starts_in_intron	12826556	12826556	-	asmbl_13615	none	STRG.17598.4,blat.proc3825156.chain_2464	2	STRG.17598.1,STRG.17598.2,Trinity_GG_9905_c0_g1_i1,Trinity_GG_9905_c0_g1_i6,blat.proc3825156.chain_2458,blat.proc3825156.chain_2459,blat.proc3825156.chain_2461,blat.proc3825156.chain_2462	8
scaffold_6	spliced_intron	12415798	12415973	-	asmbl_48805	none	STRG.7996.4	1	STRG.7996.1,STRG.7996.2,STRG.7996.3,STRG.7996.5,blat.proc3825152.chain_392,blat.proc3825152.chain_393,blat.proc3825152.chain_394	7
scaffold_8	retained_intron	11278487	11279101	-	asmbl_52147,asmbl_52148	none	STRG.10347.1,blat.proc3825152.chain_2594	2	STRG.10347.2,STRG.10347.3,blat.proc3825152.chain_2593,blat.proc3825152.chain_2596	4
scaffold_2	retained_intron	885176	885305	+	asmbl_24123	none	blat.proc3825164.chain_1623	1	STRG.1564.2,STRG.1564.3,blat.proc3825164.chain_1624	3
scaffold_20	alt_acceptor	10132773	10132774	+	asmbl_26937	none	STRG.23557.2	1	blat.proc3825176.chain_727	1
scaffold_2	retained_exon	15508154	15508400	-	asmbl_23640	none	STRG.2513.1	1	blat.proc3825148.chain_2501	1
scaffold_6	ends_in_intron	4962095	4962095	-	asmbl_48375	none	blat.proc3825150.chain_3663	1	blat.proc3825150.chain_3661,blat.proc3825150.chain_3662	2
scaffold_18	ends_in_intron	372926	372926	-	asmbl_19579	none	Trinity_GG_11786_c3_g1_i1,blat.proc3825158.chain_1994	2	STRG.20990.1,blat.proc3825158.chain_1986,blat.proc3825158.chain_1989,blat.proc3825158.chain_1990	4
scaffold_1	alternate_exon	11800709	11801137	-	asmbl_672	none	blat.proc3825148.chain_791	1	STRG.796.1	1
scaffold_18	ends_in_intron	3787126	3787126	+	asmbl_20479	none	blat.proc3825174.chain_2082	1	STRG.21196.1,Trinity_GG_28945_c0_g1_i3,blat.proc3825174.chain_2080	3
scaffold_21	alt_donor	56788	56789	-	asmbl_27271,asmbl_27272,asmbl_27274	none	STRG.23720.1,STRG.23720.2,blat.proc3825160.chain_828,blat.proc3825160.chain_829,blat.proc3825160.chain_831	5	STRG.23720.3,blat.proc3825160.chain_830	2
scaffold_14	alt_acceptor	330788	330789	-	asmbl_12820,asmbl_12821	none	STRG.16724.2,Trinity_GG_9360_c0_g1_i2,Trinity_GG_9360_c0_g1_i3,blat.proc3825156.chain_1548,blat.proc3825156.chain_1549	5	STRG.16724.1,Trinity_GG_9360_c0_g1_i4,blat.proc3825156.chain_1546	3
scaffold_3	alternate_exon	15574497	15574646	+	asmbl_40571	none	STRG.3847.4	1	STRG.3847.1,blat.proc3825166.chain_327,blat.proc3825166.chain_328,blat.proc3825166.chain_329	4
scaffold_4	starts_in_intron	4835330	4835330	+	asmbl_41311	none	Trinity_GG_19747_c0_g2_i2,blat.proc3825166.chain_838	2	STRG.4373.2,blat.proc3825166.chain_837	2
scaffold_11	alternate_exon	8472569	8478294	+	asmbl_5784	none	STRG.13864.2,Trinity_GG_24888_c0_g1_i4,blat.proc3825170.chain_2292	3	Trinity_GG_24888_c0_g1_i2,blat.proc3825170.chain_2293	2
scaffold_2	ends_in_intron	4581298	4581298	+	asmbl_24357,asmbl_24359,asmbl_24364	none	Trinity_GG_18341_c0_g1_i2,blat.proc3825164.chain_1972,blat.proc3825164.chain_1973	3	STRG.1886.1,STRG.1886.2,STRG.1886.3	3
scaffold_13	alternate_exon	1527932	1530380	-	asmbl_9414,asmbl_9415,asmbl_9418	none	STRG.15516.2,STRG.15516.3,STRG.15516.4,Trinity_GG_8698_c0_g1_i5,blat.proc3825156.chain_405	5	Trinity_GG_8698_c0_g1_i1,blat.proc3825156.chain_404	2
scaffold_23	alt_acceptor	5578434	5578435	+	asmbl_31582,asmbl_31583,asmbl_31585	none	STRG.25933.4,blat.proc3825176.chain_2834,blat.proc3825176.chain_2835	3	STRG.25933.2,blat.proc3825176.chain_2837,blat.proc3825176.chain_2840	3
scaffold_1	retained_intron	855214	855406	+	asmbl_1424,asmbl_1430	none	STRG.43.2,STRG.43.3,Trinity_GG_17353_c0_g1_i1,blat.proc3825164.chain_147	4	STRG.43.1,STRG.43.4,Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142	4
scaffold_15	starts_in_intron	1712615	1712615	+	asmbl_15034	none	Trinity_GG_27202_c0_g1_i4,blat.proc3825172.chain_2713	2	STRG.17986.1,STRG.17986.2,STRG.17986.3,blat.proc3825172.chain_2710,blat.proc3825172.chain_2711,blat.proc3825172.chain_2712,blat.proc3825172.chain_2714,blat.proc3825172.chain_2715	8
scaffold_10	alt_acceptor	8442049	8442050	-	asmbl_4588	none	STRG.12596.1,blat.proc3825154.chain_1196	2	STRG.12596.2	1
scaffold_27	spliced_intron	314737	315174	-	asmbl_36657,asmbl_36661	none	STRG.28557.2,STRG.28557.3,Trinity_GG_15948_c0_g1_i7	3	STRG.28557.1,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725	4
scaffold_4	alt_acceptor	1062805	1062806	-	asmbl_42362	none	STRG.4163.2	1	STRG.4163.1,Trinity_GG_2305_c0_g1_i1,blat.proc3825150.chain_372	3
scaffold_6	spliced_intron	8579544	8579666	+	asmbl_47150,asmbl_47151,asmbl_47152,asmbl_47153	none	STRG.7738.1,STRG.7738.2,STRG.7738.3,blat.proc3825168.chain_179	4	blat.proc3825168.chain_181	1
scaffold_15	starts_in_intron	2776026	2776026	-	asmbl_14048	none	blat.proc3825156.chain_2899	1	STRG.18069.1,STRG.18069.2,STRG.18069.3,blat.proc3825156.chain_2898	4
scaffold_7	retained_intron	1235897	1236328	+	asmbl_49602	none	STRG.8637.2	1	STRG.8637.1,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i2,Trinity_GG_22033_c0_g1_i4,Trinity_GG_22033_c0_g1_i7,blat.proc3825168.chain_1068,blat.proc3825168.chain_1072,blat.proc3825168.chain_1074,blat.proc3825168.chain_1079	9
scaffold_17	spliced_intron	793736	793904	+	asmbl_18574,asmbl_18576,asmbl_18577	none	STRG.19934.1,STRG.19934.2,STRG.19934.3	3	blat.proc3825174.chain_823	1
scaffold_26	alt_acceptor	2241305	2241306	-	asmbl_35441	none	STRG.27954.2,blat.proc3825162.chain_1257	2	STRG.27954.1,blat.proc3825162.chain_1258	2
scaffold_6	alternate_exon	14137962	14139407	+	asmbl_47585	none	blat.proc3825168.chain_666	1	STRG.8176.2	1
scaffold_14	retained_intron	2263794	2264034	-	asmbl_12930	none	blat.proc3825156.chain_1657	1	STRG.16838.1,blat.proc3825156.chain_1656	2
scaffold_13	starts_in_intron	14153761	14153761	+	asmbl_11428	none	Trinity_GG_26389_c0_g1_i3,blat.proc3825172.chain_1275	2	STRG.16461.1,Trinity_GG_26389_c0_g1_i1,Trinity_GG_26389_c0_g1_i2,blat.proc3825172.chain_1272,blat.proc3825172.chain_1273	5
scaffold_7	retained_intron	12387041	12387135	-	asmbl_51205	none	blat.proc3825152.chain_1654	1	STRG.9338.1,blat.proc3825152.chain_1655,blat.proc3825152.chain_1657,blat.proc3825152.chain_1658,blat.proc3825152.chain_1659,blat.proc3825152.chain_1660,blat.proc3825152.chain_1661	7
scaffold_20	starts_in_intron	10132836	10132836	+	asmbl_26935	none	Trinity_GG_30337_c1_g1_i1,blat.proc3825176.chain_729	2	STRG.23557.2,blat.proc3825176.chain_727	2
scaffold_10	spliced_intron	6070501	6070618	-	asmbl_4422,asmbl_4423,asmbl_4426,asmbl_4427,asmbl_4428,asmbl_4431	none	STRG.12445.1,STRG.12445.2,STRG.12445.3,blat.proc3825154.chain_1027,blat.proc3825154.chain_1029,blat.proc3825154.chain_1030,blat.proc3825154.chain_1033	7	STRG.12445.4,blat.proc3825154.chain_1026,blat.proc3825154.chain_1032	3
scaffold_25	alt_acceptor	9307096	9307097	-	asmbl_34490	none	STRG.27741.2	1	STRG.27741.1,blat.proc3825162.chain_1095	2
scaffold_23	spliced_intron	2992336	2992464	-	asmbl_30772	none	STRG.25748.3	1	STRG.25748.4	1
scaffold_17	retained_intron	9004119	9005702	+	asmbl_19057	none	blat.proc3825174.chain_1323	1	STRG.20525.1,STRG.20525.2,blat.proc3825174.chain_1320,blat.proc3825174.chain_1321	4
scaffold_15	alt_donor	15355053	15355054	+	asmbl_15755,asmbl_15761	none	STRG.18922.2,blat.proc3825172.chain_3562,blat.proc3825172.chain_3566	3	STRG.18922.3,Trinity_GG_27686_c0_g1_i7,blat.proc3825172.chain_3561,blat.proc3825172.chain_3563	4
scaffold_11	retained_intron	9693927	9694016	-	asmbl_6952,asmbl_6953,asmbl_6954	none	STRG.13992.2,STRG.13992.3,STRG.13992.5,blat.proc3825154.chain_2533	4	blat.proc3825154.chain_2534	1
scaffold_11	starts_in_intron	2079942	2079942	+	asmbl_5358	none	blat.proc3825170.chain_1938	1	STRG.13372.1,blat.proc3825170.chain_1939	2
scaffold_17	alt_acceptor	13887048	13887049	-	asmbl_18384	none	STRG.20865.1	1	STRG.20865.2	1
scaffold_6	retained_intron	17670897	17672065	+	asmbl_47772,asmbl_47774,asmbl_47777	none	STRG.8462.3,Trinity_GG_21933_c0_g1_i6,blat.proc3825168.chain_865,blat.proc3825168.chain_866,blat.proc3825168.chain_868	5	STRG.8462.2,Trinity_GG_21933_c0_g1_i2,Trinity_GG_21933_c0_g1_i5,Trinity_GG_21933_c0_g1_i7,blat.proc3825168.chain_867,blat.proc3825168.chain_869,blat.proc3825168.chain_871	7
scaffold_7	alt_donor	3815245	3815246	+	asmbl_49702	none	Trinity_GG_22142_c0_g1_i2,blat.proc3825168.chain_1252	2	STRG.8773.1,blat.proc3825168.chain_1251	2
scaffold_3	alternate_exon	14922750	14923064	-	asmbl_39431	none	STRG.3834.1,blat.proc3825148.chain_3701	2	STRG.3834.2,blat.proc3825148.chain_3702	2
scaffold_6	alt_acceptor	5197035	5197036	+	asmbl_46919,asmbl_46920,asmbl_46921,asmbl_46926	none	STRG.7496.1,Trinity_GG_21344_c0_g1_i16,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3554,blat.proc3825166.chain_3556	7	STRG.7496.2,Trinity_GG_21344_c0_g1_i13,blat.proc3825166.chain_3552	3
scaffold_13	starts_in_intron	5821488	5821488	+	asmbl_10901	none	Trinity_GG_26079_c1_g1_i2,blat.proc3825172.chain_707	2	STRG.15896.1	1
scaffold_5	spliced_intron	15462792	15463060	-	asmbl_44675,asmbl_44677,asmbl_44678	none	STRG.6732.1,STRG.6732.2,blat.proc3825150.chain_2873,blat.proc3825150.chain_2874	4	Trinity_GG_3754_c1_g1_i1,blat.proc3825150.chain_2875	2
scaffold_26	retained_intron	4136117	4136364	-	asmbl_35532,asmbl_35534	none	STRG.28116.2,blat.proc3825162.chain_1394,blat.proc3825162.chain_1395	3	STRG.28116.1,STRG.28116.3,STRG.28116.4,blat.proc3825162.chain_1393	4
scaffold_22	skipped_exon	4355625	4356493	+	asmbl_29983	none	STRG.24857.1,blat.proc3825176.chain_1963	2	STRG.24857.2,blat.proc3825176.chain_1962,blat.proc3825176.chain_1964	3
scaffold_5	retained_intron	1136209	1136301	-	asmbl_43827	none	STRG.5663.1	1	STRG.5663.2	1
scaffold_21	spliced_intron	8278506	8278610	+	asmbl_28804,asmbl_28806	none	STRG.24368.1,STRG.24368.3	2	STRG.24368.4	1
scaffold_11	spliced_intron	10145073	10145116	-	asmbl_6983,asmbl_6984	none	STRG.14028.1,STRG.14028.2	2	Trinity_GG_7815_c0_g1_i1	1
scaffold_18	alt_donor	13635005	13635006	-	asmbl_20177,asmbl_20178	none	STRG.21796.1,blat.proc3825158.chain_2648,blat.proc3825158.chain_2649	3	blat.proc3825158.chain_2650	1
scaffold_26	spliced_intron	4441929	4442021	+	asmbl_34900,asmbl_34901	none	STRG.28147.1,blat.proc3825178.chain_1233,blat.proc3825178.chain_1235	3	STRG.28147.2,Trinity_GG_32860_c0_g1_i1,blat.proc3825178.chain_1234	3
scaffold_25	starts_in_intron	8894921	8894921	+	asmbl_33768	none	STRG.27707.2,blat.proc3825178.chain_731	2	STRG.27707.1,Trinity_GG_32554_c0_g1_i2,blat.proc3825178.chain_730	3
scaffold_8	spliced_intron	9885234	9885406	+	asmbl_53131	none	STRG.10237.1,Trinity_GG_23010_c0_g1_i1,blat.proc3825168.chain_2806	3	blat.proc3825168.chain_2805	1
scaffold_26	alt_donor	6650872	6650873	-	asmbl_35692	none	blat.proc3825162.chain_1595,blat.proc3825162.chain_1596	2	STRG.28353.1,blat.proc3825162.chain_1593,blat.proc3825162.chain_1594	3
scaffold_3	retained_intron	13160942	13161070	+	asmbl_40425	none	blat.proc3825166.chain_135	1	STRG.3681.1,STRG.3681.2,blat.proc3825166.chain_136	3
scaffold_27	ends_in_intron	3051557	3051557	+	asmbl_36175	none	blat.proc3825178.chain_1945	1	STRG.28789.1,blat.proc3825178.chain_1944	2
scaffold_8	ends_in_intron	12320825	12320825	-	asmbl_52189	none	Trinity_GG_5780_c0_g1_i3,blat.proc3825152.chain_2634	2	STRG.10413.1,blat.proc3825152.chain_2632,blat.proc3825152.chain_2633,blat.proc3825152.chain_2636	4
scaffold_12	alt_donor	1728523	1728524	-	asmbl_8299	none	STRG.14470.1	1	STRG.14470.2,blat.proc3825154.chain_2970	2
scaffold_23	alt_donor	7281807	7281808	-	asmbl_31025	none	STRG.26052.2	1	STRG.26052.3	1
scaffold_27	retained_intron	129467	131958	-	asmbl_36638,asmbl_36639	none	STRG.28543.4,STRG.28543.5,blat.proc3825162.chain_1804,blat.proc3825162.chain_1805	4	STRG.28543.2,STRG.28543.3,Trinity_GG_15985_c0_g1_i5,blat.proc3825162.chain_1801	4
scaffold_19	starts_in_intron	13088822	13088822	-	asmbl_22593	none	Trinity_GG_12593_c0_g1_i1,blat.proc3825158.chain_3447	2	STRG.22626.2	1
scaffold_25	alt_acceptor	4533830	4533831	-	asmbl_34206	none	STRG.27391.2	1	STRG.27391.1,Trinity_GG_15331_c0_g1_i3,Trinity_GG_15331_c0_g1_i4,blat.proc3825162.chain_713,blat.proc3825162.chain_715	5
scaffold_3	retained_intron	10275118	10275967	+	asmbl_40255	none	Trinity_GG_19271_c0_g1_i9,blat.proc3825164.chain_3730	2	STRG.3467.1,STRG.3467.3,blat.proc3825164.chain_3727,blat.proc3825164.chain_3728,blat.proc3825164.chain_3732,blat.proc3825164.chain_3734,blat.proc3825164.chain_3736	7
scaffold_8	spliced_intron	11853070	11855193	+	asmbl_53278,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53290,asmbl_53293	none	STRG.10390.3,blat.proc3825168.chain_3018,blat.proc3825168.chain_3024,blat.proc3825168.chain_3025	4	Trinity_GG_23130_c0_g1_i12,blat.proc3825168.chain_3017	2
scaffold_2	alternate_exon	877786	880159	+	asmbl_24118	none	STRG.1563.1,blat.proc3825164.chain_1708	2	STRG.1563.2	1
scaffold_13	alternate_exon	7528669	7528766	-	asmbl_9897	none	STRG.16048.1,Trinity_GG_9022_c0_g1_i1,blat.proc3825156.chain_946	3	STRG.16048.3,Trinity_GG_9022_c0_g1_i3,blat.proc3825156.chain_945	3
scaffold_20	alternate_exon	240693	243607	-	asmbl_25470	none	STRG.22712.2	1	STRG.22712.1,Trinity_GG_12681_c0_g1_i1	2
scaffold_1	alt_acceptor	18486047	18486048	-	asmbl_1113	none	STRG.1298.3	1	STRG.1298.2,STRG.1298.4,blat.proc3825148.chain_1322	3
scaffold_6	starts_in_intron	10232562	10232562	+	asmbl_47277	none	Trinity_GG_21630_c0_g1_i2,blat.proc3825168.chain_323	2	STRG.7864.1,blat.proc3825168.chain_322	2
scaffold_7	retained_intron	3955085	3955398	-	asmbl_50834	none	blat.proc3825152.chain_1229	1	STRG.8794.2,blat.proc3825152.chain_1231,blat.proc3825152.chain_1232,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235	5
scaffold_20	starts_in_intron	6988589	6988589	-	asmbl_25863	none	Trinity_GG_12953_c0_g1_i4	1	STRG.23263.1	1
scaffold_22	ends_in_intron	6947635	6947635	+	asmbl_30139	none	STRG.25013.2,blat.proc3825176.chain_2142	2	STRG.25013.3	1
scaffold_7	starts_in_intron	11152460	11152460	+	asmbl_50157	none	STRG.9261.3,Trinity_GG_22446_c0_g1_i2,blat.proc3825168.chain_1757	3	STRG.9261.2	1
scaffold_11	alt_acceptor	4715399	4715400	+	asmbl_5499	none	STRG.13556.1,blat.proc3825170.chain_2057	2	STRG.13556.2,STRG.13556.3	2
scaffold_14	alt_acceptor	11386909	11386910	-	asmbl_13476,asmbl_13477,asmbl_13479	none	STRG.17477.1,STRG.17477.2,blat.proc3825156.chain_2291,blat.proc3825156.chain_2292	4	STRG.17477.3,blat.proc3825156.chain_2295	2
scaffold_20	retained_intron	1468562	1468884	-	asmbl_25571,asmbl_25572	none	STRG.22868.2,STRG.22868.4,Trinity_GG_12770_c0_g1_i3,blat.proc3825158.chain_3733,blat.proc3825158.chain_3734	5	STRG.22868.1,STRG.22868.3,blat.proc3825158.chain_3735	3
scaffold_7	spliced_intron	13960665	13960867	+	asmbl_50390,asmbl_50392	none	STRG.9495.1,STRG.9495.2,Trinity_GG_22592_c0_g1_i1,blat.proc3825168.chain_2025	4	STRG.9495.3,Trinity_GG_22592_c0_g1_i2,blat.proc3825168.chain_2024	3
scaffold_13	retained_intron	4351	4448	+	asmbl_10455	none	Trinity_GG_25787_c0_g1_i1,blat.proc3825172.chain_137	2	STRG.15424.1,STRG.15424.2,STRG.15424.3,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,blat.proc3825172.chain_134,blat.proc3825172.chain_138,blat.proc3825172.chain_141	9
scaffold_8	starts_in_intron	7795241	7795241	+	asmbl_52997	none	Trinity_GG_22928_c0_g1_i1,blat.proc3825168.chain_2659	2	STRG.10084.1,Trinity_GG_22928_c0_g1_i2,blat.proc3825168.chain_2658	3
scaffold_3	alt_donor	13833815	13833816	+	asmbl_40461,asmbl_40462	none	STRG.3730.1,Trinity_GG_19394_c0_g1_i1,Trinity_GG_19394_c0_g1_i3,blat.proc3825166.chain_207,blat.proc3825166.chain_208,blat.proc3825166.chain_210	6	Trinity_GG_19394_c0_g1_i6,blat.proc3825166.chain_209	2
scaffold_24	ends_in_intron	9080104	9080104	+	asmbl_32496	none	Trinity_GG_32214_c0_g1_i3,blat.proc3825178.chain_149	2	STRG.26950.1,STRG.26950.2,STRG.26950.3,Trinity_GG_32214_c0_g1_i4,Trinity_GG_32214_c0_g1_i6,Trinity_GG_32214_c0_g1_i9,blat.proc3825178.chain_146,blat.proc3825178.chain_147,blat.proc3825178.chain_148,blat.proc3825178.chain_150,blat.proc3825178.chain_151	11
scaffold_16	alternate_exon	6117775	6118441	+	asmbl_16268	none	blat.proc3825174.chain_244	1	STRG.19343.2	1
scaffold_2	spliced_intron	5375992	5376203	-	asmbl_23146	none	blat.proc3825148.chain_1906	1	STRG.1946.3,blat.proc3825148.chain_1904	2
scaffold_3	alternate_exon	8167568	8168682	-	asmbl_39018	none	blat.proc3825148.chain_3277	1	STRG.3440.1,blat.proc3825148.chain_3270	2
scaffold_6	alt_donor	7937837	7937838	-	asmbl_48515	none	STRG.7676.4	1	STRG.7676.2,STRG.7676.3,blat.proc3825152.chain_69,blat.proc3825152.chain_70	4
scaffold_2	retained_intron	1322435	1322697	+	asmbl_24185,asmbl_24187	none	STRG.1595.4,Trinity_GG_18243_c0_g1_i1,blat.proc3825164.chain_1793	3	STRG.1595.5	1
scaffold_14	alternate_exon	9313592	9313612	-	asmbl_13381	none	STRG.17333.1	1	STRG.17333.2,Trinity_GG_9703_c0_g1_i1,blat.proc3825156.chain_2115	3
scaffold_2	spliced_intron	15263572	15263652	+	asmbl_24993	none	STRG.2484.1,blat.proc3825164.chain_2587	2	blat.proc3825164.chain_2588	1
scaffold_19	alt_acceptor	13143421	13143422	+	asmbl_21855	none	STRG.22635.2,Trinity_GG_29799_c0_g1_i1,blat.proc3825174.chain_3607	3	STRG.22635.1,blat.proc3825174.chain_3608	2
scaffold_9	ends_in_intron	9733999	9733999	+	asmbl_54247	none	STRG.11353.3,blat.proc3825170.chain_204	2	STRG.11353.1,STRG.11353.2,blat.proc3825170.chain_200	3
scaffold_24	retained_intron	6223967	6224182	-	asmbl_32940,asmbl_32942	none	STRG.26685.5,STRG.26685.6,Trinity_GG_14882_c0_g1_i11,blat.proc3825160.chain_3731,blat.proc3825160.chain_3735	5	STRG.26685.1,STRG.26685.2,STRG.26685.3,STRG.26685.4,blat.proc3825160.chain_3732,blat.proc3825160.chain_3737	6
scaffold_28	alt_acceptor	303695	303696	+	asmbl_37274,asmbl_37276	none	STRG.29264.1,blat.proc3825178.chain_2506,blat.proc3825178.chain_2509	3	STRG.29264.2	1
scaffold_5	retained_exon	18820190	18820269	+	asmbl_46292,asmbl_46293	none	STRG.7010.2,STRG.7010.3	2	STRG.7010.1,blat.proc3825166.chain_3170	2
scaffold_15	spliced_intron	15188079	15189128	+	asmbl_15728,asmbl_15732,asmbl_15736,asmbl_15739,asmbl_15741,asmbl_15742	none	STRG.18910.1,blat.proc3825172.chain_3520,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3529,blat.proc3825172.chain_3532,blat.proc3825172.chain_3535	7	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534	6
scaffold_15	spliced_intron	15502183	15502253	+	asmbl_15799,asmbl_15800,asmbl_15801	none	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602	7	STRG.18943.2,blat.proc3825172.chain_3603	2
scaffold_14	retained_intron	9506808	9506827	-	asmbl_13386	none	Trinity_GG_9735_c1_g1_i1	1	STRG.17349.1,blat.proc3825156.chain_2180	2
scaffold_24	alt_donor	1064378	1064379	+	asmbl_32064	none	STRG.26380.3,Trinity_GG_31903_c0_g1_i3,blat.proc3825176.chain_3367	3	STRG.26380.5	1
scaffold_12	skipped_exon	14041166	14041584	+	asmbl_8044	none	Trinity_GG_25691_c0_g1_i1,blat.proc3825170.chain_3715	2	STRG.15233.1,Trinity_GG_25691_c0_g1_i2,blat.proc3825170.chain_3714	3
scaffold_12	alt_donor	11335372	11335373	-	asmbl_8800	none	STRG.15074.2	1	STRG.15074.1	1
scaffold_23	alt_acceptor	1189678	1189679	+	asmbl_31314,asmbl_31316	none	STRG.25599.1,blat.proc3825176.chain_2589,blat.proc3825176.chain_2590	3	blat.proc3825176.chain_2591	1
scaffold_27	alt_acceptor	2841513	2841514	+	asmbl_36133	none	STRG.28769.1,blat.proc3825178.chain_1919	2	blat.proc3825178.chain_1921	1
scaffold_5	starts_in_intron	18262369	18262369	+	asmbl_46237	none	Trinity_GG_21147_c0_g1_i1,blat.proc3825166.chain_3183	2	STRG.6968.2,STRG.6968.4,blat.proc3825166.chain_3188,blat.proc3825166.chain_3191	4
scaffold_12	alt_acceptor	15678891	15678892	-	asmbl_9094,asmbl_9095	none	STRG.15358.2,STRG.15358.3	2	STRG.15358.1,STRG.15358.4,blat.proc3825156.chain_212,blat.proc3825156.chain_213	4
scaffold_5	spliced_intron	6933262	6933389	+	asmbl_45465	none	blat.proc3825166.chain_2322	1	blat.proc3825166.chain_2323	1
scaffold_1	starts_in_intron	9032137	9032137	-	asmbl_514	none	blat.proc3825148.chain_530	1	STRG.603.1,Trinity_GG_293_c0_g1_i2,blat.proc3825148.chain_531	3
scaffold_12	alternate_exon	9232261	9233213	-	asmbl_8662,asmbl_8669,asmbl_8670	none	STRG.14939.5,blat.proc3825154.chain_3451,blat.proc3825154.chain_3454,blat.proc3825154.chain_3456	4	STRG.14939.1,STRG.14939.3,blat.proc3825154.chain_3447,blat.proc3825154.chain_3450	4
scaffold_2	skipped_exon	1616740	1617196	-	asmbl_22863	none	blat.proc3825148.chain_1566	1	STRG.1646.2,blat.proc3825148.chain_1565	2
scaffold_21	retained_intron	7999512	7999684	-	asmbl_27885	none	blat.proc3825160.chain_1503	1	STRG.24336.1,STRG.24336.2,STRG.24336.3,STRG.24336.4,blat.proc3825160.chain_1499,blat.proc3825160.chain_1500,blat.proc3825160.chain_1501,blat.proc3825160.chain_1502	8
scaffold_25	starts_in_intron	3637028	3637028	+	asmbl_33439	none	Trinity_GG_32377_c0_g1_i4,blat.proc3825178.chain_425	2	STRG.27312.1,STRG.27312.2,STRG.27312.3,blat.proc3825178.chain_426,blat.proc3825178.chain_427,blat.proc3825178.chain_428,blat.proc3825178.chain_429	7
scaffold_19	alt_acceptor	12136976	12136977	+	asmbl_21755,asmbl_21756,asmbl_21758	none	STRG.22544.1,STRG.22544.2,Trinity_GG_29790_c1_g1_i1,Trinity_GG_29790_c1_g1_i2,Trinity_GG_29790_c1_g1_i5,blat.proc3825174.chain_3580,blat.proc3825174.chain_3581,blat.proc3825174.chain_3582	8	STRG.22544.3	1
scaffold_18	retained_intron	8911050	8911533	-	asmbl_20049	none	STRG.21558.2	1	STRG.21558.1,STRG.21558.3,STRG.21558.4,STRG.21558.5,STRG.21558.6,STRG.21558.7,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2447,blat.proc3825158.chain_2449,blat.proc3825158.chain_2451,blat.proc3825158.chain_2453	12
scaffold_27	starts_in_intron	3967217	3967217	+	asmbl_36240	none	STRG.28858.2,blat.proc3825178.chain_1968	2	STRG.28858.1,blat.proc3825178.chain_1967	2
scaffold_10	starts_in_intron	784991	784991	+	asmbl_2866,asmbl_2869	none	STRG.11971.7,Trinity_GG_23932_c1_g1_i5,blat.proc3825170.chain_657,blat.proc3825170.chain_658	4	blat.proc3825170.chain_654,blat.proc3825170.chain_655,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	5
scaffold_17	alt_acceptor	4186382	4186383	-	asmbl_17844	none	blat.proc3825158.chain_1220	1	blat.proc3825158.chain_1221	1
scaffold_18	alternate_exon	7238670	7241528	+	asmbl_20730	none	STRG.21430.2,blat.proc3825174.chain_2381	2	STRG.21430.3,Trinity_GG_29105_c1_g1_i1,blat.proc3825174.chain_2382	3
scaffold_11	starts_in_intron	1285509	1285509	-	asmbl_6422,asmbl_6423	none	STRG.13318.2,blat.proc3825154.chain_1871	2	STRG.13318.1,blat.proc3825154.chain_1868,blat.proc3825154.chain_1869,blat.proc3825154.chain_1870	4
scaffold_5	retained_intron	5064190	5064837	-	asmbl_44028	none	Trinity_GG_3315_c0_g1_i2,blat.proc3825150.chain_2091	2	STRG.5964.1,STRG.5964.2,Trinity_GG_3315_c0_g1_i1,Trinity_GG_3315_c0_g1_i4,blat.proc3825150.chain_2089,blat.proc3825150.chain_2090	6
scaffold_5	retained_intron	12840721	12841915	+	asmbl_45824,asmbl_45826,asmbl_45828,asmbl_45829	none	STRG.6517.2,STRG.6517.3,STRG.6517.4,Trinity_GG_20807_c0_g1_i3,blat.proc3825166.chain_2619,blat.proc3825166.chain_2622	6	STRG.6517.1,Trinity_GG_20807_c0_g1_i1,Trinity_GG_20807_c0_g1_i2,blat.proc3825166.chain_2620,blat.proc3825166.chain_2621	5
scaffold_9	spliced_intron	7025897	7025977	+	asmbl_54122	none	STRG.11215.1,blat.proc3825170.chain_11	2	Trinity_GG_23573_c1_g1_i1,blat.proc3825170.chain_12	2
scaffold_6	spliced_intron	1497143	1498676	+	asmbl_46710	none	STRG.7191.2,blat.proc3825166.chain_3406	2	STRG.7191.1,Trinity_GG_21281_c0_g1_i2,Trinity_GG_21281_c1_g1_i1,blat.proc3825166.chain_3404,blat.proc3825166.chain_3405	5
scaffold_4	starts_in_intron	3302626	3302626	+	asmbl_41175	none	Trinity_GG_19628_c0_g1_i1	1	STRG.4260.1	1
scaffold_1	alt_acceptor	6254903	6254904	-	asmbl_331	none	Trinity_GG_222_c0_g1_i1,blat.proc3825148.chain_383	2	STRG.421.1,STRG.421.2,Trinity_GG_222_c0_g1_i4	3
scaffold_19	spliced_intron	11483966	11484174	-	asmbl_22404,asmbl_22407,asmbl_22408,asmbl_22409,asmbl_22413,asmbl_22414	none	STRG.22486.1,STRG.22486.2,Trinity_GG_12512_c0_g1_i13,Trinity_GG_12512_c0_g1_i4,blat.proc3825158.chain_3239,blat.proc3825158.chain_3240,blat.proc3825158.chain_3244,blat.proc3825158.chain_3247,blat.proc3825158.chain_3248	9	blat.proc3825158.chain_3241	1
scaffold_3	alt_acceptor	8255933	8255934	+	asmbl_40207	none	STRG.3402.2	1	STRG.3402.1,Trinity_GG_19231_c0_g1_i1,Trinity_GG_19231_c0_g1_i2,blat.proc3825164.chain_3649,blat.proc3825164.chain_3650	5
scaffold_17	retained_exon	8221255	8221393	+	asmbl_18955,asmbl_18956	none	blat.proc3825174.chain_1244,blat.proc3825174.chain_1245	2	STRG.20449.1,STRG.20449.2,blat.proc3825174.chain_1239,blat.proc3825174.chain_1242,blat.proc3825174.chain_1248	5
scaffold_19	alt_acceptor	12956159	12956160	-	asmbl_22567	none	Trinity_GG_12582_c0_g1_i2,blat.proc3825158.chain_3401	2	STRG.22612.1,Trinity_GG_12582_c0_g1_i4,Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3403,blat.proc3825158.chain_3404	7
scaffold_21	retained_intron	2441436	2441601	+	asmbl_28391	none	Trinity_GG_30491_c0_g1_i2,blat.proc3825176.chain_1003	2	STRG.23868.1	1
scaffold_24	alt_donor	3655845	3655846	+	asmbl_32148,asmbl_32150,asmbl_32153	none	STRG.26550.1,STRG.26550.3,Trinity_GG_31970_c0_g1_i5,blat.proc3825176.chain_3465,blat.proc3825176.chain_3468,blat.proc3825176.chain_3469,blat.proc3825176.chain_3470	7	STRG.26550.2,STRG.26550.5,STRG.26550.6,Trinity_GG_31970_c0_g1_i6,blat.proc3825176.chain_3463,blat.proc3825176.chain_3466,blat.proc3825176.chain_3467	7
scaffold_8	alternate_exon	17302624	17302705	-	asmbl_52446	none	blat.proc3825152.chain_2898	1	STRG.10653.1,STRG.10653.2,STRG.10653.3,blat.proc3825152.chain_2900,blat.proc3825152.chain_2901,blat.proc3825152.chain_2902	6
scaffold_19	ends_in_intron	10790084	10790084	+	asmbl_21657	none	blat.proc3825174.chain_3448	1	STRG.22420.1,STRG.22420.2,blat.proc3825174.chain_3449	3
scaffold_7	alt_donor	4178756	4178757	+	asmbl_49724,asmbl_49725	none	STRG.8817.2,blat.proc3825168.chain_1254	2	STRG.8817.1,STRG.8817.3,blat.proc3825168.chain_1255	3
scaffold_2	alt_donor	19127909	19127910	+	asmbl_25264	none	blat.proc3825164.chain_2969	1	blat.proc3825164.chain_2970	1
scaffold_18	retained_exon	8875853	8875900	-	asmbl_20038,asmbl_20040	none	STRG.21551.2,blat.proc3825158.chain_2468	2	STRG.21551.1,STRG.21551.3,blat.proc3825158.chain_2471	3
scaffold_9	ends_in_intron	3847255	3847255	-	asmbl_54946	none	blat.proc3825152.chain_3250	1	STRG.11008.1,blat.proc3825152.chain_3252	2
scaffold_17	alt_acceptor	13610820	13610821	+	asmbl_19338	none	STRG.20835.1	1	STRG.20835.2	1
scaffold_11	alt_donor	8192979	8192980	-	asmbl_6851	none	STRG.13829.1,Trinity_GG_7742_c0_g1_i3,blat.proc3825154.chain_2395	3	STRG.13829.2,Trinity_GG_7742_c0_g1_i1,blat.proc3825154.chain_2394	3
scaffold_4	alt_donor	13763114	13763115	-	asmbl_43005	none	blat.proc3825150.chain_1141	1	STRG.4997.1,blat.proc3825150.chain_1143	2
scaffold_21	alt_acceptor	1684484	1684485	-	asmbl_27414	none	STRG.23820.1,blat.proc3825160.chain_945	2	STRG.23820.2	1
scaffold_18	spliced_intron	632566	632655	+	asmbl_20313	none	STRG.21004.3	1	STRG.21004.2,blat.proc3825174.chain_1852	2
scaffold_5	ends_in_intron	9808231	9808231	+	asmbl_45646	none	blat.proc3825166.chain_2498	1	STRG.6298.1,blat.proc3825166.chain_2497	2
scaffold_1	spliced_intron	18279633	18279766	-	asmbl_1096	none	STRG.1279.3,blat.proc3825148.chain_1283	2	STRG.1279.2	1
scaffold_2	starts_in_intron	8063546	8063546	+	asmbl_24611	none	Trinity_GG_18492_c0_g1_i1,blat.proc3825164.chain_2260	2	STRG.2102.1,blat.proc3825164.chain_2261	2
scaffold_21	starts_in_intron	4256380	4256380	-	asmbl_27568	none	Trinity_GG_13378_c0_g1_i2	1	STRG.24003.1,blat.proc3825160.chain_1127	2
scaffold_5	retained_intron	2668980	2669850	-	asmbl_43891,asmbl_43896,asmbl_43897	none	STRG.5796.2,STRG.5796.5,Trinity_GG_3227_c0_g1_i5,blat.proc3825150.chain_1943,blat.proc3825150.chain_1945	5	STRG.5796.1,STRG.5796.3,blat.proc3825150.chain_1947,blat.proc3825150.chain_1949	4
scaffold_23	starts_in_intron	1484469	1484469	-	asmbl_30653	none	Trinity_GG_14334_c0_g1_i1	1	STRG.25629.1,blat.proc3825160.chain_2793	2
scaffold_3	skipped_exon	11608270	11609155	-	asmbl_39173	none	STRG.3595.2,blat.proc3825148.chain_3467,blat.proc3825148.chain_3469	3	STRG.3595.1,blat.proc3825148.chain_3468	2
scaffold_10	spliced_intron	5535601	5535697	-	asmbl_4371	none	blat.proc3825154.chain_929	1	Trinity_GG_6906_c0_g1_i2,blat.proc3825154.chain_928	2
scaffold_19	retained_intron	12246351	12246698	-	asmbl_22469,asmbl_22471,asmbl_22473	none	STRG.22552.1,blat.proc3825158.chain_3307,blat.proc3825158.chain_3310,blat.proc3825158.chain_3313	4	blat.proc3825158.chain_3312	1
scaffold_25	alt_donor	5153856	5153857	-	asmbl_34241	none	STRG.27436.2,Trinity_GG_15381_c0_g1_i1,blat.proc3825162.chain_795	3	STRG.27436.1,Trinity_GG_15381_c0_g1_i2,blat.proc3825162.chain_794	3
scaffold_8	alternate_exon	15211188	15211238	+	asmbl_53392	none	STRG.10555.3	1	STRG.10555.2	1
scaffold_22	ends_in_intron	7946042	7946042	+	asmbl_30242,asmbl_30243	none	Trinity_GG_31246_c0_g2_i3,blat.proc3825176.chain_2292,blat.proc3825176.chain_2293	3	STRG.25149.1,STRG.25149.2,blat.proc3825176.chain_2291	3
scaffold_7	skipped_exon	5234496	5236725	+	asmbl_49801	none	blat.proc3825168.chain_1364	1	STRG.8866.1,blat.proc3825168.chain_1366	2
scaffold_27	retained_intron	6782467	6782627	-	asmbl_37083	none	Trinity_GG_16292_c0_g1_i1,blat.proc3825162.chain_2275	2	STRG.29050.3,STRG.29050.4,blat.proc3825162.chain_2278,blat.proc3825162.chain_2280	4
scaffold_12	retained_intron	7172399	7172720	+	asmbl_7722	none	blat.proc3825170.chain_3303	1	STRG.14794.2,blat.proc3825170.chain_3304,blat.proc3825170.chain_3305	3
scaffold_1	alternate_exon	4565503	4567860	-	asmbl_207	none	STRG.285.3	1	blat.proc3825148.chain_152,blat.proc3825148.chain_158	2
scaffold_28	alternate_exon	5240375	5240406	+	asmbl_37576,asmbl_37577	none	STRG.29677.1,Trinity_GG_33753_c0_g1_i1,Trinity_GG_33753_c0_g1_i3,blat.proc3825178.chain_2846,blat.proc3825178.chain_2848	5	STRG.29677.3	1
scaffold_26	alt_donor	4457113	4457114	+	asmbl_34905,asmbl_34906	none	STRG.28164.1,STRG.28164.2,blat.proc3825178.chain_1244,blat.proc3825178.chain_1245	4	STRG.28164.3	1
scaffold_13	ends_in_intron	13976914	13976914	-	asmbl_10165	none	blat.proc3825156.chain_1299	1	STRG.16449.1,blat.proc3825156.chain_1298	2
scaffold_3	retained_exon	6170991	6171653	-	asmbl_38902,asmbl_38903	none	STRG.3284.2,STRG.3284.3,blat.proc3825148.chain_3076	3	STRG.3284.1,blat.proc3825148.chain_3074,blat.proc3825148.chain_3075	3
scaffold_18	spliced_intron	8726455	8726561	+	asmbl_20857,asmbl_20858,asmbl_20859,asmbl_20862	none	STRG.21537.1,STRG.21537.2,STRG.21537.3,blat.proc3825174.chain_2616,blat.proc3825174.chain_2617,blat.proc3825174.chain_2618,blat.proc3825174.chain_2620	7	Trinity_GG_29235_c0_g1_i3,blat.proc3825174.chain_2615,blat.proc3825174.chain_2619,blat.proc3825174.chain_2621	4
scaffold_18	spliced_intron	5984775	5985191	+	asmbl_20641,asmbl_20646	none	blat.proc3825174.chain_2289,blat.proc3825174.chain_2291,blat.proc3825174.chain_2293	3	STRG.21368.1,blat.proc3825174.chain_2287	2
scaffold_14	starts_in_intron	11633031	11633031	+	asmbl_12395	none	Trinity_GG_26929_c0_g1_i2	1	STRG.17504.1	1
scaffold_19	alt_acceptor	12822377	12822378	-	asmbl_22545,asmbl_22546,asmbl_22549,asmbl_22554	none	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	6	blat.proc3825158.chain_3413	1
scaffold_17	retained_intron	8845886	8846064	+	asmbl_19024,asmbl_19025,asmbl_19027,asmbl_19028	none	STRG.20495.2,STRG.20495.3,Trinity_GG_28543_c0_g1_i6,blat.proc3825174.chain_1351,blat.proc3825174.chain_1355	5	STRG.20495.1,blat.proc3825174.chain_1353	2
scaffold_2	starts_in_intron	10878495	10878495	+	asmbl_24737	none	Trinity_GG_18581_c3_g1_i1,blat.proc3825164.chain_2444	2	STRG.2245.1,Trinity_GG_18581_c0_g1_i6,blat.proc3825164.chain_2437,blat.proc3825164.chain_2438	4
scaffold_5	alternate_exon	13825489	13825595	-	asmbl_44571	none	STRG.6601.1	1	STRG.6601.2	1
scaffold_24	alt_donor	2513672	2513673	+	asmbl_32104	none	STRG.26469.1	1	STRG.26469.2,STRG.26469.3,STRG.26469.4,blat.proc3825176.chain_3420,blat.proc3825176.chain_3421,blat.proc3825176.chain_3422	6
scaffold_25	alt_acceptor	4818561	4818562	+	asmbl_33535,asmbl_33536	none	STRG.27418.3,Trinity_GG_32399_c0_g1_i1,Trinity_GG_32399_c0_g1_i2,blat.proc3825178.chain_470,blat.proc3825178.chain_471	5	STRG.27418.1,STRG.27418.2	2
scaffold_15	retained_intron	4493750	4493846	+	asmbl_15143,asmbl_15146	none	STRG.18177.2,blat.proc3825172.chain_2856	2	STRG.18177.1,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2853,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2857,blat.proc3825172.chain_2858	7
scaffold_20	spliced_intron	10384550	10384667	+	asmbl_26960,asmbl_26962	none	STRG.23583.4,blat.proc3825176.chain_668	2	blat.proc3825176.chain_672	1
scaffold_11	alt_donor	1824781	1824782	-	asmbl_6449	none	STRG.13344.2	1	STRG.13344.1	1
scaffold_13	alternate_exon	6042161	6047202	-	asmbl_9765	none	STRG.15915.4,blat.proc3825156.chain_784	2	blat.proc3825156.chain_783	1
scaffold_19	starts_in_intron	11523406	11523406	-	asmbl_22417	none	STRG.22491.2,blat.proc3825158.chain_3209	2	STRG.22491.1,STRG.22491.3,blat.proc3825158.chain_3208	3
scaffold_3	ends_in_intron	10943277	10943277	-	asmbl_39128	none	blat.proc3825148.chain_3417	1	STRG.3547.1,blat.proc3825148.chain_3418,blat.proc3825148.chain_3419	3
scaffold_25	alt_donor	5827723	5827724	-	asmbl_34289,asmbl_34292	none	STRG.27479.3,blat.proc3825162.chain_878	2	STRG.27479.1,STRG.27479.2,STRG.27479.4,blat.proc3825162.chain_876,blat.proc3825162.chain_877	5
scaffold_7	starts_in_intron	2488945	2488945	+	asmbl_49649	none	blat.proc3825168.chain_1194	1	STRG.8684.1,STRG.8684.2,blat.proc3825168.chain_1193,blat.proc3825168.chain_1195,blat.proc3825168.chain_1196	5
scaffold_13	retained_exon	15037855	15037979	-	asmbl_10223	none	STRG.16553.2,blat.proc3825156.chain_1379	2	STRG.16553.1,blat.proc3825156.chain_1380	2
scaffold_4	ends_in_intron	19711661	19711661	+	asmbl_42159	none	STRG.5567.2	1	STRG.5567.1,blat.proc3825166.chain_1829	2
scaffold_21	spliced_intron	705967	706986	-	asmbl_27352	none	Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793	2	STRG.23759.2,Trinity_GG_13202_c0_g2_i1,blat.proc3825160.chain_799	3
scaffold_3	starts_in_intron	17345800	17345800	+	asmbl_40667	none	Trinity_GG_19538_c0_g1_i3,blat.proc3825166.chain_468	2	STRG.3963.1,STRG.3963.2,blat.proc3825166.chain_470,blat.proc3825166.chain_471	4
scaffold_3	spliced_intron	6046201	6046335	-	asmbl_38882	none	STRG.3259.6	1	STRG.3259.1,STRG.3259.3,STRG.3259.4,STRG.3259.7	4
scaffold_19	skipped_exon	12079113	12079560	-	asmbl_22448	none	STRG.22531.2	1	STRG.22531.1,Trinity_GG_12503_c0_g1_i1,blat.proc3825158.chain_3226	3
scaffold_23	starts_in_intron	1141712	1141712	-	asmbl_30632	none	STRG.25596.2	1	STRG.25596.1,blat.proc3825160.chain_2731,blat.proc3825160.chain_2733,blat.proc3825160.chain_2734	4
scaffold_28	spliced_intron	3968426	3968455	+	asmbl_37510	none	STRG.29597.2	1	STRG.29597.1	1
scaffold_1	skipped_exon	20338943	20340702	+	asmbl_2618	none	STRG.1396.2,blat.proc3825164.chain_1596	2	blat.proc3825164.chain_1591	1
scaffold_5	ends_in_intron	5739398	5739398	+	asmbl_45365,asmbl_45367	none	STRG.5992.1,STRG.5992.2	2	STRG.5992.4,STRG.5992.5,STRG.5992.6,blat.proc3825166.chain_2131,blat.proc3825166.chain_2135	5
scaffold_2	alt_acceptor	33474	33475	+	asmbl_24065,asmbl_24066	none	STRG.1496.5,blat.proc3825164.chain_1645	2	STRG.1496.1,STRG.1496.3,STRG.1496.4,Trinity_GG_18174_c0_g1_i9,blat.proc3825164.chain_1639	5
scaffold_15	alt_acceptor	5628133	5628134	-	asmbl_14227,asmbl_14228	none	STRG.18252.1,Trinity_GG_10271_c0_g1_i1,Trinity_GG_10271_c0_g1_i2,blat.proc3825156.chain_3100,blat.proc3825156.chain_3101	5	STRG.18252.2	1
scaffold_24	starts_in_intron	9091899	9091899	+	asmbl_32503	none	blat.proc3825178.chain_159	1	STRG.26951.1,STRG.26951.2,STRG.26951.3,STRG.26951.4,blat.proc3825178.chain_158,blat.proc3825178.chain_160,blat.proc3825178.chain_162	7
scaffold_4	retained_intron	7090140	7091175	+	asmbl_41459	none	STRG.4547.1,blat.proc3825166.chain_1039	2	STRG.4547.3,blat.proc3825166.chain_1040	2
scaffold_340	retained_intron	3284	3408	+	asmbl_41010,asmbl_41011,asmbl_41012	none	STRG.30295.3,STRG.30295.4,STRG.30295.5,Trinity_GG_34083_c0_g1_i8,Trinity_GG_7034_c0_g1_i1,blat.proc3825154.chain_1179,blat.proc3825178.chain_3395	7	STRG.30295.1,STRG.30295.2	2
scaffold_21	alt_acceptor	8008372	8008373	+	asmbl_28775,asmbl_28776,asmbl_28780,asmbl_28781	none	STRG.24337.2,STRG.24337.3,blat.proc3825176.chain_1553,blat.proc3825176.chain_1554,blat.proc3825176.chain_1555,blat.proc3825176.chain_1557	6	STRG.24337.1	1
scaffold_16	alt_acceptor	409376	409377	-	asmbl_16866	none	blat.proc3825158.chain_165	1	STRG.19031.1,blat.proc3825158.chain_163,blat.proc3825158.chain_164	3
scaffold_25	retained_intron	5827770	5828229	-	asmbl_34295	none	blat.proc3825162.chain_874	1	STRG.27479.1,STRG.27479.2,STRG.27479.3,STRG.27479.4,blat.proc3825162.chain_877,blat.proc3825162.chain_878	6
scaffold_127	alt_donor	5727	5728	+	asmbl_9281	none	blat.proc3825162.chain_3324	1	STRG.30165.1	1
scaffold_17	spliced_intron	6684218	6684386	+	asmbl_18865	none	STRG.20322.3,blat.proc3825174.chain_1157	2	STRG.20322.2,blat.proc3825174.chain_1156	2
scaffold_13	alt_donor	2566446	2566447	+	asmbl_10626	none	STRG.15563.1	1	STRG.15563.2	1
scaffold_19	alt_acceptor	8230531	8230532	+	asmbl_21501	none	STRG.22274.2	1	STRG.22274.1,Trinity_GG_29602_c0_g1_i1,blat.proc3825174.chain_3250	3
scaffold_10	retained_intron	8897598	8897769	-	asmbl_4626	none	blat.proc3825154.chain_1272	1	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1271,blat.proc3825154.chain_1273,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	12
scaffold_27	ends_in_intron	6182621	6182621	+	asmbl_36384	none	blat.proc3825178.chain_2230	1	STRG.29014.1,STRG.29014.2,STRG.29014.3,STRG.29014.4	4
scaffold_6	starts_in_intron	3285820	3285820	-	asmbl_48239	none	blat.proc3825150.chain_3416	1	STRG.7334.1,STRG.7334.2,STRG.7334.3	3
scaffold_1	alternate_exon	18739071	18741277	-	asmbl_1125	none	STRG.1306.2,blat.proc3825148.chain_1305	2	STRG.1306.3,blat.proc3825148.chain_1306	2
scaffold_11	alternate_exon	11784315	11785749	+	asmbl_5998,asmbl_5999	none	STRG.14099.1,STRG.14099.3	2	STRG.14099.2	1
scaffold_2	alt_acceptor	6517982	6517983	+	asmbl_24472,asmbl_24473,asmbl_24474,asmbl_24475	none	STRG.2022.1,STRG.2022.3,STRG.2022.4,STRG.2022.5,Trinity_GG_18449_c0_g1_i2,blat.proc3825164.chain_2143	6	STRG.2022.2	1
scaffold_13	alt_donor	3323680	3323681	-	asmbl_9529,asmbl_9530	none	STRG.15640.1,Trinity_GG_8777_c0_g1_i1,Trinity_GG_8777_c0_g1_i2,blat.proc3825156.chain_517,blat.proc3825156.chain_518	5	STRG.15640.2	1
scaffold_17	retained_intron	8626956	8627047	+	asmbl_19010,asmbl_19011	none	STRG.20477.2,Trinity_GG_28498_c0_g1_i1,blat.proc3825174.chain_1274	3	STRG.20477.1,Trinity_GG_28498_c0_g1_i2,blat.proc3825174.chain_1276	3
scaffold_23	ends_in_intron	6858697	6858697	-	asmbl_30985	none	Trinity_GG_14570_c0_g1_i10,blat.proc3825160.chain_3200	2	STRG.26018.2,STRG.26018.3,blat.proc3825160.chain_3203	3
scaffold_21	spliced_intron	6191859	6192384	+	asmbl_28621,asmbl_28622	none	STRG.24151.2,blat.proc3825176.chain_1349,blat.proc3825176.chain_1351	3	STRG.24151.1,Trinity_GG_30691_c0_g1_i3,blat.proc3825176.chain_1350	3
scaffold_10	retained_intron	4057996	4058495	-	asmbl_4251	none	STRG.12246.7,Trinity_GG_6843_c2_g1_i1,blat.proc3825154.chain_821,blat.proc3825154.chain_827	4	STRG.12246.2,STRG.12246.4,blat.proc3825154.chain_822,blat.proc3825154.chain_824	4
scaffold_26	retained_intron	8995725	8995801	+	asmbl_35194	none	STRG.28464.1	1	STRG.28464.2,blat.proc3825178.chain_1568	2
scaffold_24	retained_intron	7175760	7176154	-	asmbl_33015	none	STRG.26767.1	1	STRG.26767.2	1
scaffold_1	starts_in_intron	12060504	12060504	-	asmbl_684	none	blat.proc3825148.chain_809	1	STRG.825.1,STRG.825.3	2
scaffold_25	starts_in_intron	8507253	8507253	-	asmbl_34451	none	blat.proc3825162.chain_1008	1	STRG.27688.1	1
scaffold_16	skipped_exon	10835446	10836280	+	asmbl_16558	none	blat.proc3825174.chain_515	1	STRG.19636.1,blat.proc3825174.chain_516	2
scaffold_4	starts_in_intron	13388835	13388835	+	asmbl_41786	none	Trinity_GG_20046_c0_g1_i1,blat.proc3825166.chain_1332	2	STRG.4967.1,blat.proc3825166.chain_1331	2
scaffold_4	ends_in_intron	11403011	11403011	-	asmbl_42885	none	blat.proc3825150.chain_1029	1	STRG.4844.1,blat.proc3825150.chain_1030	2
scaffold_27	alt_donor	2814532	2814533	+	asmbl_36117	none	STRG.28763.2,Trinity_GG_33230_c1_g1_i2,blat.proc3825178.chain_1927	3	STRG.28763.1,STRG.28763.3,STRG.28763.4,blat.proc3825178.chain_1922,blat.proc3825178.chain_1923,blat.proc3825178.chain_1925	6
scaffold_5	alt_acceptor	6733178	6733179	+	asmbl_45449	none	STRG.6078.3	1	STRG.6078.1,STRG.6078.2,blat.proc3825166.chain_2281,blat.proc3825166.chain_2282	4
scaffold_5	alt_donor	10183682	10183683	-	asmbl_44318	none	blat.proc3825150.chain_2510	1	STRG.6318.1	1
scaffold_10	retained_intron	8896936	8897048	-	asmbl_4623,asmbl_4624,asmbl_4627,asmbl_4631	none	blat.proc3825154.chain_1264,blat.proc3825154.chain_1271,blat.proc3825154.chain_1274,blat.proc3825154.chain_1275	4	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1265,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1269,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273	9
scaffold_27	alt_acceptor	627301	627302	-	asmbl_36701,asmbl_36705,asmbl_36707	none	STRG.28583.2,STRG.28583.4,Trinity_GG_15996_c0_g1_i1,blat.proc3825162.chain_1824,blat.proc3825162.chain_1828	5	STRG.28583.1,blat.proc3825162.chain_1827	2
scaffold_22	alt_donor	9124220	9124221	-	asmbl_29513	none	STRG.25245.2	1	STRG.25245.1,STRG.25245.3	2
scaffold_13	skipped_exon	6291694	6294471	+	asmbl_10917,asmbl_10922	none	STRG.15925.1,blat.proc3825172.chain_660,blat.proc3825172.chain_661	3	STRG.15925.2,blat.proc3825172.chain_658,blat.proc3825172.chain_659	3
scaffold_2	starts_in_intron	14443077	14443077	+	asmbl_24934	none	Trinity_GG_18688_c0_g1_i3,blat.proc3825164.chain_2701	2	STRG.2450.1,STRG.2450.2,blat.proc3825164.chain_2699	3
scaffold_8	alternate_exon	17974550	17974946	-	asmbl_52497	none	STRG.10702.1,Trinity_GG_5951_c0_g1_i1,blat.proc3825152.chain_2975	3	STRG.10702.3	1
scaffold_1	spliced_intron	12462400	12462824	-	asmbl_718,asmbl_719,asmbl_722	none	STRG.867.2,STRG.867.3,STRG.867.5	3	STRG.867.4	1
scaffold_23	ends_in_intron	9833741	9833741	-	asmbl_31112	none	Trinity_GG_14650_c0_g1_i3,blat.proc3825160.chain_3353	2	STRG.26184.1	1
scaffold_6	ends_in_intron	3388462	3388462	+	asmbl_46843	none	blat.proc3825166.chain_3576	1	STRG.7352.1,blat.proc3825166.chain_3575	2
scaffold_4	alternate_exon	7265423	7265561	+	asmbl_41480,asmbl_41486	none	STRG.4561.6,STRG.4561.7,Trinity_GG_19860_c0_g1_i4,blat.proc3825166.chain_1048	4	STRG.4561.2,STRG.4561.5,Trinity_GG_19860_c0_g1_i1,Trinity_GG_19860_c0_g1_i3,blat.proc3825166.chain_1049,blat.proc3825166.chain_1050	6
scaffold_14	skipped_exon	7495217	7496741	+	asmbl_12170	none	STRG.17193.3	1	STRG.17193.1,STRG.17193.2,STRG.17193.4,Trinity_GG_26725_c1_g1_i2,blat.proc3825172.chain_1878,blat.proc3825172.chain_1881,blat.proc3825172.chain_1882	7
scaffold_1	alt_donor	20341539	20341540	+	asmbl_2616	none	STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593	5	STRG.1396.1,STRG.1396.3,blat.proc3825164.chain_1594,blat.proc3825164.chain_1597	4
scaffold_26	alt_acceptor	6350865	6350866	-	asmbl_35682,asmbl_35683	none	STRG.28335.3,STRG.28335.5	2	STRG.28335.1,STRG.28335.2,STRG.28335.6,blat.proc3825162.chain_1570	4
scaffold_17	starts_in_intron	2535041	2535041	-	asmbl_17760	none	blat.proc3825158.chain_1074	1	STRG.20049.1,STRG.20049.2,blat.proc3825158.chain_1071,blat.proc3825158.chain_1072,blat.proc3825158.chain_1073	5
scaffold_19	ends_in_intron	12476985	12476985	-	asmbl_22489	none	STRG.22587.3,Trinity_GG_12581_c1_g1_i5,blat.proc3825158.chain_3389	3	STRG.22587.1,Trinity_GG_12581_c1_g1_i6,blat.proc3825158.chain_3388,blat.proc3825158.chain_3390	4
scaffold_24	skipped_exon	7594201	7595281	-	asmbl_33035	none	STRG.26799.2	1	STRG.26799.1	1
scaffold_14	alt_acceptor	15565680	15565681	+	asmbl_12624	none	STRG.17796.1	1	blat.proc3825172.chain_2534	1
scaffold_20	spliced_intron	10384363	10384687	+	asmbl_26959	none	STRG.23583.3	1	blat.proc3825176.chain_672	1
scaffold_21	starts_in_intron	9939454	9939454	+	asmbl_28853	none	blat.proc3825176.chain_1615	1	STRG.24457.1	1
scaffold_7	spliced_intron	13204588	13204713	+	asmbl_50314,asmbl_50316,asmbl_50317	none	STRG.9432.1,STRG.9432.2,blat.proc3825168.chain_1973,blat.proc3825168.chain_1975	4	Trinity_GG_22565_c0_g1_i1,blat.proc3825168.chain_1974	2
scaffold_21	alternate_exon	730477	730675	+	asmbl_28294	none	STRG.23764.4	1	STRG.23764.1	1
scaffold_26	spliced_intron	7904645	7904751	+	asmbl_35156	none	STRG.28416.1	1	Trinity_GG_33022_c0_g1_i2	1
scaffold_5	spliced_intron	10290152	10290283	-	asmbl_44335	none	STRG.6329.1,blat.proc3825150.chain_2522	2	blat.proc3825150.chain_2521	1
scaffold_3	retained_intron	4257051	4257133	+	asmbl_39984	none	STRG.3119.1,Trinity_GG_19075_c0_g1_i1	2	STRG.3119.2	1
scaffold_8	ends_in_intron	17557143	17557143	+	asmbl_53492	none	Trinity_GG_23242_c0_g1_i1,blat.proc3825168.chain_3223	2	STRG.10675.1,blat.proc3825168.chain_3222	2
scaffold_10	spliced_intron	6867580	6867771	-	asmbl_4510,asmbl_4511	none	blat.proc3825154.chain_1143,blat.proc3825154.chain_1145	2	blat.proc3825154.chain_1139	1
scaffold_21	alternate_exon	8001305	8001726	-	asmbl_27882	none	STRG.24336.3,blat.proc3825160.chain_1502	2	STRG.24336.1,STRG.24336.2,blat.proc3825160.chain_1499,blat.proc3825160.chain_1501	4
scaffold_20	spliced_intron	4510126	4510257	-	asmbl_25746	none	STRG.23132.1,blat.proc3825160.chain_150	2	blat.proc3825160.chain_148	1
scaffold_22	retained_intron	11404015	11404118	+	asmbl_30381	none	STRG.25476.2	1	STRG.25476.1,blat.proc3825176.chain_2464	2
scaffold_1210	alt_donor	2571	2572	-	asmbl_9263	none	STRG.30565.2	1	STRG.30565.1	1
scaffold_7	alt_donor	6624509	6624510	+	asmbl_49870	none	STRG.8935.3	1	STRG.8935.4	1
scaffold_15	spliced_intron	13325591	13325794	+	asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15634	none	STRG.18771.1,Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3389	6	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	8
scaffold_7	alt_donor	15270953	15270954	+	asmbl_50425,asmbl_50427,asmbl_50429	none	STRG.9546.4,blat.proc3825168.chain_2120,blat.proc3825168.chain_2123	3	STRG.9546.1,STRG.9546.3,blat.proc3825168.chain_2122,blat.proc3825168.chain_2125	4
scaffold_13	retained_exon	2274821	2274958	-	asmbl_9444	none	STRG.15548.2,blat.proc3825156.chain_399	2	STRG.15548.1,blat.proc3825156.chain_398	2
scaffold_15	retained_intron	9004560	9004735	-	asmbl_14364	none	STRG.18444.1,blat.proc3825156.chain_3343	2	STRG.18444.3,blat.proc3825156.chain_3344	2
scaffold_3	retained_intron	17780927	17781032	+	asmbl_40692	none	STRG.3995.1,Trinity_GG_19551_c0_g1_i1,blat.proc3825166.chain_487	3	STRG.3995.2	1
scaffold_1	alternate_exon	17618853	17619008	-	asmbl_1048	none	STRG.1225.1	1	STRG.1225.2,blat.proc3825148.chain_1206	2
scaffold_15	alternate_exon	15844804	15849094	+	asmbl_15819,asmbl_15820,asmbl_15821	none	STRG.18973.1,STRG.18973.2,STRG.18973.3,Trinity_GG_27688_c1_g1_i1,blat.proc3825172.chain_3571,blat.proc3825172.chain_3579	6	STRG.18973.4,STRG.18973.5,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i7,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3568,blat.proc3825172.chain_3570,blat.proc3825172.chain_3574	8
scaffold_18	alternate_exon	4763173	4763351	+	asmbl_20556	none	Trinity_GG_29026_c1_g1_i2,blat.proc3825174.chain_2229	2	STRG.21273.1,STRG.21273.2,STRG.21273.3,STRG.21273.4,Trinity_GG_29026_c1_g1_i4,blat.proc3825174.chain_2228	6
scaffold_1	retained_exon	12334830	12334912	-	asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_714,asmbl_715,asmbl_716	none	STRG.849.1,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_832,blat.proc3825148.chain_833,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	8	blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839	3
scaffold_6	retained_intron	5198065	5198348	+	asmbl_46918,asmbl_46925	none	STRG.7496.5,STRG.7496.6,Trinity_GG_21344_c0_g1_i6,blat.proc3825166.chain_3555	4	STRG.7496.1,STRG.7496.2,Trinity_GG_21344_c0_g1_i13,Trinity_GG_21344_c0_g1_i3,blat.proc3825166.chain_3547,blat.proc3825166.chain_3548,blat.proc3825166.chain_3550,blat.proc3825166.chain_3551,blat.proc3825166.chain_3552,blat.proc3825166.chain_3554	10
scaffold_18	spliced_intron	1944645	1944740	-	asmbl_19673	none	STRG.21082.1,blat.proc3825158.chain_2036	2	STRG.21082.2,blat.proc3825158.chain_2037	2
scaffold_16	starts_in_intron	6146735	6146735	+	asmbl_16285	none	Trinity_GG_27847_c0_g1_i2	1	STRG.19354.2,STRG.19354.3,blat.proc3825174.chain_143	3
scaffold_3	alt_donor	7709095	7709096	-	asmbl_38977,asmbl_38982,asmbl_38984	none	blat.proc3825148.chain_3197,blat.proc3825148.chain_3202,blat.proc3825148.chain_3204	3	STRG.3368.1,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3201,blat.proc3825148.chain_3203	5
scaffold_8	spliced_intron	11243691	11244097	+	asmbl_53204	none	STRG.10332.1,blat.proc3825168.chain_2905	2	Trinity_GG_23065_c0_g1_i2,Trinity_GG_23065_c0_g1_i3,blat.proc3825168.chain_2904,blat.proc3825168.chain_2906	4
scaffold_23	alt_acceptor	4449748	4449749	-	asmbl_30867	none	STRG.25862.3,Trinity_GG_14447_c0_g1_i1,blat.proc3825160.chain_3002	3	STRG.25862.1,STRG.25862.4,STRG.25862.5,Trinity_GG_14447_c0_g1_i2,Trinity_GG_14447_c0_g1_i3,blat.proc3825160.chain_3004,blat.proc3825160.chain_3005	7
scaffold_12	spliced_intron	15694711	15694787	+	asmbl_8134	none	STRG.15366.1,blat.proc3825172.chain_95	2	blat.proc3825172.chain_94	1
scaffold_24	spliced_intron	9121547	9121853	+	asmbl_32516	none	STRG.26939.1,Trinity_GG_32182_c0_g1_i4,blat.proc3825178.chain_95	3	blat.proc3825178.chain_98	1
scaffold_9	ends_in_intron	17460888	17460888	-	asmbl_55644	none	Trinity_GG_6560_c0_g1_i1,blat.proc3825154.chain_341	2	STRG.11837.1	1
scaffold_16	skipped_exon	7240374	7243239	-	asmbl_17170,asmbl_17173,asmbl_17175,asmbl_17176	none	STRG.19399.1,STRG.19399.2,STRG.19399.4,STRG.19399.5	4	STRG.19399.3	1
scaffold_12	retained_intron	12802383	12802469	+	asmbl_8020	none	STRG.15177.2,Trinity_GG_25638_c0_g2_i1,blat.proc3825170.chain_3623	3	STRG.15177.1,blat.proc3825170.chain_3619,blat.proc3825170.chain_3620,blat.proc3825170.chain_3621	4
scaffold_25	alt_acceptor	9045820	9045821	-	asmbl_34475,asmbl_34478	none	STRG.27715.1,STRG.27715.2,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106	4	blat.proc3825162.chain_1111	1
scaffold_1	alt_donor	21931318	21931319	-	asmbl_1228	none	STRG.1473.1	1	STRG.1473.2	1
scaffold_23	ends_in_intron	356089	356089	-	asmbl_30598,asmbl_30599,asmbl_30600	none	STRG.25564.2,blat.proc3825160.chain_2720,blat.proc3825160.chain_2728	3	STRG.25564.1,blat.proc3825160.chain_2721,blat.proc3825160.chain_2722,blat.proc3825160.chain_2723,blat.proc3825160.chain_2725	5
scaffold_7	ends_in_intron	7506928	7506928	-	asmbl_50945	none	Trinity_GG_5093_c0_g1_i1,blat.proc3825152.chain_1421	2	STRG.9009.1,blat.proc3825152.chain_1420	2
scaffold_15	starts_in_intron	4500084	4500084	+	asmbl_15153	none	blat.proc3825172.chain_2829	1	STRG.18181.1,blat.proc3825172.chain_2830,blat.proc3825172.chain_2831	3
scaffold_6	retained_intron	5054843	5054934	-	asmbl_48388	none	STRG.7486.2,Trinity_GG_4225_c0_g1_i12,blat.proc3825150.chain_3643	3	STRG.7486.1,STRG.7486.3,STRG.7486.5,blat.proc3825150.chain_3641,blat.proc3825150.chain_3645	5
scaffold_7	spliced_intron	5840050	5841961	-	asmbl_50892	none	blat.proc3825152.chain_1280	1	STRG.8892.1,blat.proc3825152.chain_1279,blat.proc3825152.chain_1281	3
scaffold_19	alternate_exon	5345716	5350532	-	asmbl_22150,asmbl_22151	none	STRG.22102.2,STRG.22102.3,blat.proc3825158.chain_2954,blat.proc3825158.chain_2957,blat.proc3825158.chain_2958,blat.proc3825158.chain_2959	6	STRG.22102.1	1
scaffold_2	retained_intron	956724	956897	-	asmbl_22825,asmbl_22827	none	STRG.1572.2,Trinity_GG_850_c0_g1_i2,blat.proc3825148.chain_1534	3	STRG.1572.1,blat.proc3825148.chain_1533	2
scaffold_8	spliced_intron	16141006	16141091	-	asmbl_52364,asmbl_52366,asmbl_52367	none	STRG.10604.4,blat.proc3825152.chain_2831,blat.proc3825152.chain_2832,blat.proc3825152.chain_2833	4	blat.proc3825152.chain_2829	1
scaffold_2	retained_intron	899777	899876	+	asmbl_24149,asmbl_24150	none	STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717	3	STRG.1569.1,STRG.1569.2,blat.proc3825164.chain_1721	3
scaffold_9	starts_in_intron	15412938	15412938	-	asmbl_55526	none	blat.proc3825154.chain_200	1	STRG.11740.1,blat.proc3825154.chain_198	2
scaffold_23	alternate_exon	5080495	5080665	-	asmbl_30882	none	blat.proc3825160.chain_3067	1	STRG.25891.2,blat.proc3825160.chain_3069	2
scaffold_1	alt_acceptor	1555630	1555631	+	asmbl_1488	none	STRG.93.2	1	STRG.93.1	1
scaffold_23	alternate_exon	6331560	6332566	+	asmbl_31615	none	blat.proc3825176.chain_2911	1	STRG.25988.3,blat.proc3825176.chain_2910	2
scaffold_28	starts_in_intron	6489421	6489421	+	asmbl_37623	none	Trinity_GG_33785_c0_g1_i1,blat.proc3825178.chain_2899	2	blat.proc3825178.chain_2897,blat.proc3825178.chain_2898	2
scaffold_16	alt_donor	5805830	5805831	+	asmbl_16228,asmbl_16229	none	STRG.19326.3,Trinity_GG_27849_c0_g1_i4,blat.proc3825174.chain_150	3	STRG.19326.1,Trinity_GG_27849_c0_g1_i1,blat.proc3825174.chain_148	3
scaffold_4	starts_in_intron	4097192	4097192	+	asmbl_41225	none	blat.proc3825166.chain_702	1	STRG.4315.1,STRG.4315.2,STRG.4315.3,STRG.4315.4,blat.proc3825166.chain_703,blat.proc3825166.chain_704,blat.proc3825166.chain_705,blat.proc3825166.chain_707,blat.proc3825166.chain_709,blat.proc3825166.chain_710	10
scaffold_4	alt_acceptor	13431109	13431110	+	asmbl_41795,asmbl_41796	none	STRG.4981.2,STRG.4981.3	2	STRG.4981.1	1
scaffold_1	alternate_exon	2739990	2746610	-	asmbl_130	none	STRG.176.3	1	STRG.176.4,Trinity_GG_110_c0_g1_i6	2
scaffold_1	alternate_exon	18485992	18486118	-	asmbl_1115	none	STRG.1298.5	1	STRG.1298.2,STRG.1298.4,blat.proc3825148.chain_1322	3
scaffold_6	alt_acceptor	7515924	7515925	-	asmbl_48496,asmbl_48500,asmbl_48501	none	STRG.7655.3,Trinity_GG_4298_c0_g1_i2,blat.proc3825152.chain_11,blat.proc3825152.chain_12,blat.proc3825152.chain_15	5	STRG.7655.1,STRG.7655.2,STRG.7655.4,STRG.7655.5,blat.proc3825152.chain_13,blat.proc3825152.chain_14	6
scaffold_2	alt_acceptor	14074928	14074929	+	asmbl_24874	none	STRG.2404.1	1	STRG.2404.2	1
scaffold_2	starts_in_intron	482054	482054	-	asmbl_22805	none	blat.proc3825148.chain_1466	1	STRG.1532.1,STRG.1532.2,STRG.1532.3,blat.proc3825148.chain_1467	4
scaffold_24	spliced_intron	9121693	9121853	+	asmbl_32519	none	blat.proc3825178.chain_96	1	STRG.26939.2,blat.proc3825178.chain_97,blat.proc3825178.chain_98	3
scaffold_4	skipped_exon	16340830	16341198	-	asmbl_43159	none	STRG.5202.2	1	STRG.5202.1	1
scaffold_18	alternate_exon	4157454	4157646	+	asmbl_20507	none	STRG.21221.1,blat.proc3825174.chain_2113	2	STRG.21221.2,blat.proc3825174.chain_2114	2
scaffold_12	alternate_exon	3803789	3804075	+	asmbl_7574	none	STRG.14588.2	1	STRG.14588.1,blat.proc3825170.chain_3153	2
scaffold_13	retained_intron	2340135	2340365	+	asmbl_10597,asmbl_10607	none	STRG.15564.10,STRG.15564.9	2	STRG.15564.2,STRG.15564.3,STRG.15564.4,STRG.15564.5,STRG.15564.8	5
scaffold_13	alt_acceptor	15672303	15672304	+	asmbl_11528,asmbl_11530	none	STRG.16612.5,STRG.16612.6	2	STRG.16612.1,STRG.16612.2,STRG.16612.3	3
scaffold_13	skipped_exon	405375	406892	-	asmbl_9335,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9352	none	STRG.15444.1,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_362,blat.proc3825156.chain_366	10	STRG.15444.3,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i5,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_364	7
scaffold_11	ends_in_intron	11643823	11643823	+	asmbl_5992	none	blat.proc3825170.chain_2609	1	STRG.14094.1,blat.proc3825170.chain_2608	2
scaffold_12	retained_intron	10187010	10187126	-	asmbl_8738	none	blat.proc3825154.chain_3514	1	STRG.14994.1,STRG.14994.2,STRG.14994.3,STRG.14994.4,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516,blat.proc3825154.chain_3517,blat.proc3825154.chain_3518,blat.proc3825154.chain_3519,blat.proc3825154.chain_3520	10
scaffold_5	starts_in_intron	13087619	13087619	-	asmbl_44512	none	STRG.6544.2	1	STRG.6544.1,blat.proc3825150.chain_2716,blat.proc3825150.chain_2717	3
scaffold_23	spliced_intron	8125986	8126005	-	asmbl_31079	none	STRG.26121.1	1	Trinity_GG_14613_c0_g1_i1	1
scaffold_13	retained_exon	405973	406064	-	asmbl_9343,asmbl_9347,asmbl_9349,asmbl_9354	none	STRG.15444.3,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i5,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_364	7	STRG.15444.1,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_362,blat.proc3825156.chain_366	10
scaffold_25	retained_intron	4441939	4442378	+	asmbl_33495	none	STRG.27374.1,Trinity_GG_32407_c0_g1_i1,blat.proc3825178.chain_481	3	STRG.27374.2	1
scaffold_17	starts_in_intron	9489246	9489246	+	asmbl_19095	none	Trinity_GG_28585_c0_g1_i3,blat.proc3825174.chain_1448	2	STRG.20572.1,STRG.20572.2,STRG.20572.3,Trinity_GG_28585_c0_g1_i5,blat.proc3825174.chain_1444,blat.proc3825174.chain_1446,blat.proc3825174.chain_1447,blat.proc3825174.chain_1449,blat.proc3825174.chain_1450	9
scaffold_5	ends_in_intron	3981799	3981799	-	asmbl_43940,asmbl_43941	none	blat.proc3825150.chain_2020,blat.proc3825150.chain_2021	2	STRG.5871.1,blat.proc3825150.chain_2019	2
scaffold_13	alternate_exon	2992568	2992632	+	asmbl_10645,asmbl_10647	none	STRG.15606.1,STRG.15606.2,blat.proc3825172.chain_367	3	STRG.15606.3	1
scaffold_8	retained_exon	12693353	12693373	+	asmbl_53327,asmbl_53328,asmbl_53329	none	STRG.10446.1,STRG.10446.2,blat.proc3825168.chain_3009	3	blat.proc3825168.chain_3006,blat.proc3825168.chain_3007,blat.proc3825168.chain_3008,blat.proc3825168.chain_3011	4
scaffold_20	starts_in_intron	9962811	9962811	-	asmbl_26064	none	STRG.23540.1,blat.proc3825160.chain_629	2	STRG.23540.2,STRG.23540.3	2
scaffold_14	retained_intron	15638709	15638796	+	asmbl_12638	none	STRG.17807.2	1	STRG.17807.1,Trinity_GG_27094_c0_g1_i2,blat.proc3825172.chain_2515	3
scaffold_2	alt_acceptor	2516590	2516591	-	asmbl_22897	none	STRG.1691.1,blat.proc3825148.chain_1653	2	STRG.1691.2,STRG.1691.3	2
scaffold_17	alt_donor	682829	682830	-	asmbl_17646	none	STRG.19921.2	1	blat.proc3825158.chain_962	1
scaffold_5	alternate_exon	2234892	2234910	-	asmbl_43879	none	blat.proc3825150.chain_1995	1	STRG.5760.1	1
scaffold_22	spliced_intron	215344	216306	+	asmbl_29821,asmbl_29822,asmbl_29823	none	STRG.24676.1,STRG.24676.2,blat.proc3825176.chain_1807,blat.proc3825176.chain_1808	4	STRG.24676.3,Trinity_GG_30960_c0_g1_i4,blat.proc3825176.chain_1806	3
scaffold_11	retained_intron	3697980	3698259	+	asmbl_5455	none	Trinity_GG_24702_c0_g1_i1,blat.proc3825170.chain_1995	2	STRG.13489.2	1
scaffold_20	alt_acceptor	4374679	4374680	+	asmbl_26580	none	STRG.23122.1	1	STRG.23122.2	1
scaffold_7	alt_donor	15266496	15266497	+	asmbl_50428,asmbl_50429,asmbl_50430,asmbl_50432	none	STRG.9546.2,STRG.9546.3,blat.proc3825168.chain_2122,blat.proc3825168.chain_2123	4	STRG.9546.1,blat.proc3825168.chain_2120	2
scaffold_8	spliced_intron	11270565	11270676	-	asmbl_52142	none	STRG.10337.3	1	STRG.10337.1,blat.proc3825152.chain_2577	2
scaffold_9	skipped_exon	4898501	4899242	+	asmbl_53969	none	STRG.11064.1	1	STRG.11064.2,blat.proc3825168.chain_3562	2
scaffold_11	retained_intron	9021079	9021443	-	asmbl_6904	none	blat.proc3825154.chain_2408	1	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2406,blat.proc3825154.chain_2407	5
scaffold_19	alternate_exon	7707004	7708318	+	asmbl_21489,asmbl_21491,asmbl_21492	none	STRG.22255.1,STRG.22255.3,blat.proc3825174.chain_3256,blat.proc3825174.chain_3257	4	STRG.22255.2,Trinity_GG_29606_c0_g2_i1,blat.proc3825174.chain_3258	3
scaffold_8	alt_donor	9656041	9656042	+	asmbl_53095,asmbl_53097	none	STRG.10219.5,blat.proc3825168.chain_2809	2	STRG.10219.1,STRG.10219.2,STRG.10219.3,blat.proc3825168.chain_2808,blat.proc3825168.chain_2810	5
scaffold_7	alt_donor	12404192	12404193	-	asmbl_51212	none	STRG.9337.2,blat.proc3825152.chain_1617	2	STRG.9337.1,blat.proc3825152.chain_1618	2
scaffold_17	skipped_exon	11035300	11036021	-	asmbl_18266	none	STRG.20664.1	1	STRG.20664.3	1
scaffold_9	retained_exon	2796321	2796360	+	asmbl_53859,asmbl_53867	none	STRG.10918.1,STRG.10918.4,Trinity_GG_23372_c0_g1_i8,blat.proc3825168.chain_3433	4	STRG.10918.2,STRG.10918.5,Trinity_GG_23372_c0_g1_i5,Trinity_GG_23372_c0_g1_i7,blat.proc3825168.chain_3429,blat.proc3825168.chain_3431	6
scaffold_11	starts_in_intron	563112	563112	-	asmbl_6396	none	blat.proc3825154.chain_1846	1	STRG.13272.1,blat.proc3825154.chain_1845	2
scaffold_8	spliced_intron	18084680	18084897	-	asmbl_52502,asmbl_52504,asmbl_52506,asmbl_52507,asmbl_52508	none	STRG.10710.1,STRG.10710.3,STRG.10710.4,STRG.10710.5,Trinity_GG_5955_c0_g1_i2,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2979,blat.proc3825152.chain_2982	8	STRG.10710.2,Trinity_GG_5955_c0_g1_i1,Trinity_GG_5955_c0_g1_i3,blat.proc3825152.chain_2980,blat.proc3825152.chain_2981	5
scaffold_15	alt_acceptor	1588805	1588806	+	asmbl_15019	none	STRG.17965.2,blat.proc3825172.chain_2685	2	STRG.17965.1,blat.proc3825172.chain_2686	2
scaffold_21	ends_in_intron	8187803	8187803	+	asmbl_28798	none	blat.proc3825176.chain_1527	1	STRG.24355.1	1
scaffold_4	spliced_intron	4413750	4414043	+	asmbl_41245,asmbl_41255,asmbl_41262	none	STRG.4349.1,STRG.4349.4,blat.proc3825166.chain_841,blat.proc3825166.chain_851	4	STRG.4349.2,Trinity_GG_19749_c0_g1_i11,blat.proc3825166.chain_840,blat.proc3825166.chain_846	4
scaffold_24	alternate_exon	9084646	9087625	+	asmbl_32499,asmbl_32501	none	STRG.26951.1,STRG.26951.2,blat.proc3825178.chain_158	3	STRG.26951.4,blat.proc3825178.chain_160,blat.proc3825178.chain_161,blat.proc3825178.chain_162	4
scaffold_6	alt_acceptor	13357491	13357492	-	asmbl_48907	none	STRG.8094.1,blat.proc3825152.chain_508	2	STRG.8094.2,blat.proc3825152.chain_509	2
scaffold_2	alt_acceptor	15333988	15333989	+	asmbl_25031	none	STRG.2483.1,Trinity_GG_18716_c0_g1_i1	2	STRG.2483.2,Trinity_GG_18716_c0_g1_i2	2
scaffold_5	starts_in_intron	6012110	6012110	-	asmbl_44076	none	blat.proc3825150.chain_2167	1	STRG.6019.1,STRG.6019.2,STRG.6019.3,blat.proc3825150.chain_2168,blat.proc3825150.chain_2169	5
scaffold_23	ends_in_intron	810768	810768	-	asmbl_30607	none	Trinity_GG_14309_c0_g1_i5,blat.proc3825160.chain_2755	2	STRG.25583.1,STRG.25583.3,blat.proc3825160.chain_2754	3
scaffold_10	alternate_exon	17006681	17006817	+	asmbl_3737,asmbl_3739	none	STRG.13161.3,Trinity_GG_24546_c0_g1_i2,blat.proc3825170.chain_1721	3	STRG.13161.1,STRG.13161.2,Trinity_GG_24546_c0_g1_i1,blat.proc3825170.chain_1722	4
scaffold_26	retained_intron	6663772	6663872	+	asmbl_35102	none	STRG.28377.3,Trinity_GG_32974_c0_g1_i1,blat.proc3825178.chain_1423	3	STRG.28377.1,STRG.28377.2,blat.proc3825178.chain_1424	3
scaffold_28	ends_in_intron	4203779	4203779	+	asmbl_37525,asmbl_37527	none	STRG.29616.3,Trinity_GG_33739_c0_g1_i8,blat.proc3825178.chain_2811	3	STRG.29616.1,STRG.29616.2	2
scaffold_2	ends_in_intron	888719	888719	+	asmbl_24127	none	blat.proc3825164.chain_1716	1	STRG.1565.1,STRG.1565.3,STRG.1565.4,STRG.1565.5,blat.proc3825164.chain_1712,blat.proc3825164.chain_1714,blat.proc3825164.chain_1715	7
scaffold_21	starts_in_intron	385260	385260	-	asmbl_27302	none	blat.proc3825160.chain_843	1	STRG.23729.1,STRG.23729.2,Trinity_GG_13221_c0_g1_i1,blat.proc3825160.chain_842	4
scaffold_11	spliced_intron	6534474	6535499	-	asmbl_6719	none	STRG.13702.1,blat.proc3825154.chain_2271	2	STRG.13702.2,blat.proc3825154.chain_2273	2
scaffold_20	starts_in_intron	8114013	8114013	-	asmbl_25962	none	blat.proc3825160.chain_487	1	STRG.23361.1,STRG.23361.2,blat.proc3825160.chain_484,blat.proc3825160.chain_485,blat.proc3825160.chain_486	5
scaffold_28	alt_acceptor	296267	296268	+	asmbl_37267,asmbl_37268,asmbl_37269,asmbl_37272	none	STRG.29263.1,STRG.29263.3,blat.proc3825178.chain_2488,blat.proc3825178.chain_2490,blat.proc3825178.chain_2491,blat.proc3825178.chain_2492	6	STRG.29263.2,blat.proc3825178.chain_2489	2
scaffold_3	alt_acceptor	4904506	4904507	+	asmbl_40041	none	STRG.3185.2,blat.proc3825164.chain_3452	2	STRG.3185.1,blat.proc3825164.chain_3451	2
scaffold_21	alternate_exon	5777671	5777823	-	asmbl_27695,asmbl_27697	none	STRG.24114.3,blat.proc3825160.chain_1200	2	STRG.24114.1,STRG.24114.2,blat.proc3825160.chain_1198,blat.proc3825160.chain_1199	4
scaffold_4	retained_intron	7380297	7380425	-	asmbl_42714	none	STRG.4577.1,blat.proc3825150.chain_793	2	STRG.4577.2	1
scaffold_24	alt_donor	7099268	7099269	+	asmbl_32367	none	STRG.26761.2	1	STRG.26761.1	1
scaffold_8	spliced_intron	17454124	17454424	+	asmbl_53477	none	STRG.10670.2,Trinity_GG_23215_c0_g1_i1,blat.proc3825168.chain_3162	3	blat.proc3825168.chain_3161	1
scaffold_6	spliced_intron	13574733	13575353	-	asmbl_48914,asmbl_48915,asmbl_48916	none	STRG.8098.2,STRG.8098.3,STRG.8098.4,Trinity_GG_4614_c2_g1_i3,blat.proc3825152.chain_538	5	STRG.8098.1,Trinity_GG_4614_c2_g1_i4,Trinity_GG_4614_c2_g1_i5,blat.proc3825152.chain_539,blat.proc3825152.chain_540	5
scaffold_19	alt_acceptor	1111288	1111289	-	asmbl_22026	none	STRG.21903.4	1	STRG.21903.1	1
scaffold_24	alt_acceptor	4836831	4836832	+	asmbl_32206	none	STRG.26613.1,blat.proc3825176.chain_3523	2	blat.proc3825176.chain_3524	1
scaffold_6	skipped_exon	13059727	13060614	-	asmbl_48871	none	STRG.8063.3	1	STRG.8063.1,STRG.8063.2,STRG.8063.4,blat.proc3825152.chain_455	4
scaffold_2	spliced_intron	888658	888815	+	asmbl_24128,asmbl_24130,asmbl_24133,asmbl_24135	none	STRG.1565.1,STRG.1565.3,STRG.1565.4,blat.proc3825164.chain_1714	4	STRG.1565.2,Trinity_GG_18210_c1_g1_i3,blat.proc3825164.chain_1713	3
scaffold_3	retained_intron	13647877	13648874	-	asmbl_39276	none	STRG.3709.1,Trinity_GG_2039_c0_g1_i2,blat.proc3825148.chain_3601	3	STRG.3709.3,Trinity_GG_2039_c0_g1_i3,blat.proc3825148.chain_3599	3
scaffold_20	alt_donor	9629566	9629567	+	asmbl_26870	none	STRG.23501.3,Trinity_GG_30232_c0_g1_i1,blat.proc3825176.chain_566	3	STRG.23501.4	1
scaffold_25	starts_in_intron	3712989	3712989	-	asmbl_34150	none	blat.proc3825162.chain_689	1	STRG.27321.1,blat.proc3825162.chain_688	2
scaffold_12	retained_intron	1973797	1973924	-	asmbl_8310	none	Trinity_GG_8074_c0_g1_i1,blat.proc3825154.chain_2976	2	STRG.14485.1	1
scaffold_1	retained_exon	11175248	11175308	+	asmbl_2078,asmbl_2079,asmbl_2080,asmbl_2081,asmbl_2082,asmbl_2086	none	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_909,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_915	9	blat.proc3825164.chain_913	1
scaffold_9	alt_donor	4953097	4953098	-	asmbl_54981	none	STRG.11071.3	1	STRG.11071.1,blat.proc3825152.chain_3309	2
scaffold_26	starts_in_intron	9044898	9044898	+	asmbl_35202	none	Trinity_GG_33066_c0_g2_i1,blat.proc3825178.chain_1596	2	STRG.28471.1,STRG.28471.2,Trinity_GG_33066_c0_g1_i3,blat.proc3825178.chain_1595	4
scaffold_13	ends_in_intron	5844268	5844268	-	asmbl_9736	none	Trinity_GG_8938_c1_g1_i1,blat.proc3825156.chain_775	2	STRG.15894.1,blat.proc3825156.chain_771,blat.proc3825156.chain_773	3
scaffold_4	starts_in_intron	16508138	16508138	-	asmbl_43185	none	blat.proc3825150.chain_1411	1	STRG.5228.1,blat.proc3825150.chain_1410,blat.proc3825150.chain_1412	3
scaffold_2	alt_donor	1258301	1258302	-	asmbl_22840	none	blat.proc3825164.chain_1742	1	STRG.1587.1	1
scaffold_12	starts_in_intron	6542189	6542189	+	asmbl_7700	none	Trinity_GG_25435_c0_g1_i2,blat.proc3825170.chain_3248	2	STRG.14758.1,STRG.14758.3,Trinity_GG_25435_c0_g1_i1,blat.proc3825170.chain_3247	4
scaffold_11	ends_in_intron	11639863	11639863	+	asmbl_5985	none	blat.proc3825170.chain_2638	1	STRG.14090.1,STRG.14090.2,blat.proc3825170.chain_2634,blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2639,blat.proc3825170.chain_2640	8
scaffold_1	alt_acceptor	14430006	14430007	+	asmbl_2393,asmbl_2394,asmbl_2395,asmbl_2397	none	STRG.1046.1,STRG.1046.3,blat.proc3825164.chain_1218,blat.proc3825164.chain_1219,blat.proc3825164.chain_1220	5	STRG.1046.2	1
scaffold_5	alternate_exon	17192251	17192382	+	asmbl_46141	none	STRG.6891.3,blat.proc3825166.chain_3059	2	STRG.6891.1	1
scaffold_5	retained_exon	238215	239201	-	asmbl_43761	none	STRG.5593.3,STRG.5593.4,blat.proc3825150.chain_1832	3	STRG.5593.1	1
scaffold_8	retained_intron	11849733	11850658	+	asmbl_53277	none	STRG.10390.2,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	3	STRG.10390.3,STRG.10390.5,blat.proc3825168.chain_3020,blat.proc3825168.chain_3022,blat.proc3825168.chain_3025	5
scaffold_1	alt_acceptor	12174629	12174630	+	asmbl_2189,asmbl_2191	none	STRG.839.1,STRG.839.3,blat.proc3825164.chain_1013,blat.proc3825164.chain_1016	4	STRG.839.2,STRG.839.4,blat.proc3825164.chain_1012,blat.proc3825164.chain_1014	4
scaffold_28	alt_acceptor	8411409	8411410	+	asmbl_37744	none	STRG.29917.2	1	STRG.29917.1,Trinity_GG_33870_c0_g1_i1,blat.proc3825178.chain_3061	3
scaffold_1	ends_in_intron	9514954	9514954	-	asmbl_536	none	Trinity_GG_337_c0_g1_i1,blat.proc3825148.chain_626	2	STRG.635.1,blat.proc3825148.chain_624,blat.proc3825148.chain_625	3
scaffold_21	alternate_exon	3124891	3125225	-	asmbl_27518	none	blat.proc3825160.chain_1059	1	STRG.23943.2,STRG.23943.3,STRG.23943.4,Trinity_GG_13335_c0_g1_i1,blat.proc3825160.chain_1056,blat.proc3825160.chain_1057,blat.proc3825160.chain_1058,blat.proc3825160.chain_1060	8
scaffold_18	spliced_intron	1893653	1894712	-	asmbl_19655,asmbl_19658,asmbl_19660,asmbl_19661,asmbl_19662,asmbl_19665	none	blat.proc3825158.chain_2010,blat.proc3825158.chain_2011,blat.proc3825158.chain_2012,blat.proc3825158.chain_2013,blat.proc3825158.chain_2014,blat.proc3825158.chain_2016,blat.proc3825158.chain_2017,blat.proc3825158.chain_2018	8	STRG.21081.1,STRG.21081.10,STRG.21081.6,STRG.21081.9,blat.proc3825158.chain_2019	5
scaffold_16	alt_acceptor	13980979	13980980	-	asmbl_17422	none	STRG.19798.1,Trinity_GG_11087_c0_g1_i1,blat.proc3825158.chain_825	3	STRG.19798.2	1
scaffold_18	spliced_intron	13033293	13033322	+	asmbl_20989	none	blat.proc3825174.chain_2785	1	Trinity_GG_29335_c0_g1_i1	1
scaffold_16	spliced_intron	2215678	2215859	+	asmbl_16123	none	STRG.19123.1,Trinity_GG_27776_c0_g1_i2,blat.proc3825172.chain_3744	3	blat.proc3825172.chain_3745	1
scaffold_43	alt_donor	686	687	-	asmbl_43696	none	STRG.30047.1	1	STRG.30047.5	1
scaffold_6	alt_acceptor	14900519	14900520	+	asmbl_47646	none	STRG.8266.2,Trinity_GG_21865_c0_g1_i1,blat.proc3825168.chain_752	3	STRG.8266.1,Trinity_GG_21865_c0_g1_i3,blat.proc3825168.chain_751	3
scaffold_15	alt_donor	12106676	12106677	+	asmbl_15537	none	blat.proc3825172.chain_3296	1	STRG.18668.1,STRG.18668.2	2
scaffold_26	retained_intron	5045239	5045524	+	asmbl_34950,asmbl_34951	none	blat.proc3825178.chain_1168,blat.proc3825178.chain_1171	2	STRG.28240.1,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1170,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179	8
scaffold_25	alt_acceptor	4439960	4439961	+	asmbl_33499	none	STRG.27374.4	1	STRG.27374.1,STRG.27374.2,STRG.27374.3,Trinity_GG_32407_c0_g1_i1,Trinity_GG_32407_c0_g1_i2,blat.proc3825178.chain_481,blat.proc3825178.chain_482	7
scaffold_8	alt_donor	11675595	11675596	-	asmbl_52154	none	STRG.10365.2	1	STRG.10365.1	1
scaffold_25	retained_exon	5827636	5827764	-	asmbl_34291	none	blat.proc3825162.chain_876	1	blat.proc3825162.chain_879,blat.proc3825162.chain_880	2
scaffold_3	spliced_intron	16038460	16038558	+	asmbl_40597	none	STRG.3885.1,blat.proc3825166.chain_384,blat.proc3825166.chain_385	3	STRG.3885.2	1
scaffold_3	spliced_intron	14187141	14189188	-	asmbl_39330,asmbl_39334,asmbl_39335	none	STRG.3761.2,blat.proc3825148.chain_3664,blat.proc3825148.chain_3666,blat.proc3825148.chain_3668	4	STRG.3761.1,STRG.3761.3,STRG.3761.5,Trinity_GG_2073_c0_g1_i5,blat.proc3825148.chain_3667	5
scaffold_15	starts_in_intron	15502183	15502183	+	asmbl_15802	none	Trinity_GG_27698_c0_g1_i5,blat.proc3825172.chain_3600	2	STRG.18943.1,Trinity_GG_27698_c0_g1_i1,Trinity_GG_27698_c0_g1_i2,Trinity_GG_27698_c0_g1_i3,blat.proc3825172.chain_3599,blat.proc3825172.chain_3601,blat.proc3825172.chain_3602	7
scaffold_537	alt_acceptor	3946	3947	-	asmbl_46546	none	STRG.30376.1	1	STRG.30376.2	1
scaffold_17	alt_donor	10069243	10069244	+	asmbl_19169,asmbl_19171	none	STRG.20631.1,Trinity_GG_28612_c0_g1_i2,Trinity_GG_28612_c0_g1_i4,blat.proc3825174.chain_1514,blat.proc3825174.chain_1515	5	STRG.20631.2	1
scaffold_12	alt_acceptor	16401680	16401681	+	asmbl_8173	none	Trinity_GG_25733_c0_g1_i9,blat.proc3825172.chain_42	2	STRG.15402.2,Trinity_GG_25733_c0_g1_i3,blat.proc3825172.chain_44	3
scaffold_8	alt_acceptor	7514967	7514968	-	asmbl_51918	none	STRG.10083.1,blat.proc3825152.chain_2282	2	STRG.10083.2	1
scaffold_19	starts_in_intron	4868012	4868012	+	asmbl_21344	none	Trinity_GG_29501_c0_g1_i1,blat.proc3825174.chain_3069	2	STRG.22065.1,STRG.22065.2,STRG.22065.3,blat.proc3825174.chain_3068	4
scaffold_22	retained_intron	4368173	4368545	+	asmbl_29995	none	STRG.24856.2,Trinity_GG_31049_c0_g1_i1,blat.proc3825176.chain_1959	3	STRG.24856.1,blat.proc3825176.chain_1960	2
scaffold_2	spliced_intron	9791343	9791807	+	asmbl_24685,asmbl_24686,asmbl_24687,asmbl_24689,asmbl_24690	none	STRG.2185.1,Trinity_GG_18541_c0_g1_i1,Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2361,blat.proc3825164.chain_2363,blat.proc3825164.chain_2364,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	8	Trinity_GG_18541_c0_g1_i4,blat.proc3825164.chain_2362	2
scaffold_10	alternate_exon	1430914	1430986	-	asmbl_4053	none	STRG.12015.2	1	STRG.12015.3,blat.proc3825154.chain_554	2
scaffold_8	retained_intron	9468446	9468514	-	asmbl_52039	none	blat.proc3825152.chain_2505	1	STRG.10207.1,blat.proc3825152.chain_2499,blat.proc3825152.chain_2500,blat.proc3825152.chain_2502,blat.proc3825152.chain_2503,blat.proc3825152.chain_2504	6
scaffold_21	alt_acceptor	10973074	10973075	+	asmbl_28907	none	STRG.24573.2	1	STRG.24573.1	1
scaffold_21	spliced_intron	11346223	11346264	-	asmbl_28124	none	STRG.24614.4	1	STRG.24614.2,STRG.24614.3	2
scaffold_11	alt_donor	7886086	7886087	+	asmbl_5688,asmbl_5690	none	STRG.13792.2,STRG.13792.3,Trinity_GG_24911_c0_g1_i3,blat.proc3825170.chain_2335	4	STRG.13792.1,Trinity_GG_24911_c0_g1_i1,Trinity_GG_24911_c0_g1_i4,blat.proc3825170.chain_2334,blat.proc3825170.chain_2336	5
scaffold_7	retained_intron	4933150	4933374	+	asmbl_49766,asmbl_49767	none	STRG.8852.4,blat.proc3825168.chain_1349,blat.proc3825168.chain_1350	3	blat.proc3825168.chain_1351	1
scaffold_26	alt_acceptor	7588364	7588365	+	asmbl_35131	none	STRG.28394.1	1	STRG.28394.2	1
scaffold_6	alt_acceptor	18621645	18621646	+	asmbl_47831	none	STRG.8528.2,Trinity_GG_22002_c0_g1_i2,blat.proc3825168.chain_992	3	STRG.8528.1,Trinity_GG_22002_c0_g1_i1,blat.proc3825168.chain_993	3
scaffold_1	alt_acceptor	3438193	3438194	+	asmbl_1595	none	STRG.212.2,Trinity_GG_17470_c0_g1_i1,blat.proc3825164.chain_335	3	STRG.212.1,Trinity_GG_17470_c0_g1_i2,blat.proc3825164.chain_336	3
scaffold_6	starts_in_intron	3820523	3820523	+	asmbl_46871	none	STRG.7387.2,Trinity_GG_21342_c1_g1_i1,blat.proc3825166.chain_3545	3	STRG.7387.1,blat.proc3825166.chain_3544	2
scaffold_2	alternate_exon	4069893	4070082	-	asmbl_23048	none	STRG.1852.1,blat.proc3825148.chain_1830	2	STRG.1852.2,Trinity_GG_1029_c0_g1_i1,blat.proc3825148.chain_1831	3
scaffold_6	retained_intron	7516477	7517141	-	asmbl_48499	none	STRG.7655.2,Trinity_GG_4298_c0_g2_i1,blat.proc3825152.chain_16	3	STRG.7655.4,blat.proc3825152.chain_11	2
scaffold_21	retained_intron	731085	731446	+	asmbl_28290	none	STRG.23764.3,Trinity_GG_30474_c0_g3_i1,blat.proc3825176.chain_972	3	STRG.23764.1,STRG.23764.2,STRG.23764.4,STRG.23764.5,Trinity_GG_30474_c0_g1_i2,blat.proc3825176.chain_969	6
scaffold_25	alt_donor	9429093	9429094	+	asmbl_33812	none	STRG.27757.1,Trinity_GG_32597_c0_g1_i2,blat.proc3825178.chain_798	3	STRG.27757.2	1
scaffold_14	alternate_exon	16026061	16026150	+	asmbl_12659	none	STRG.17844.2	1	STRG.17844.1,blat.proc3825172.chain_2499	2
scaffold_4	retained_exon	14318900	14318970	-	asmbl_43044	none	STRG.5048.3,blat.proc3825150.chain_1203	2	STRG.5048.2,blat.proc3825150.chain_1204	2
scaffold_1	alternate_exon	9176683	9176693	-	asmbl_522	none	STRG.608.1,blat.proc3825148.chain_610	2	STRG.608.2	1
scaffold_18	ends_in_intron	7644502	7644502	-	asmbl_19964	none	Trinity_GG_12017_c0_g1_i6,blat.proc3825158.chain_2395	2	STRG.21463.1,STRG.21463.2,STRG.21463.3,STRG.21463.4,Trinity_GG_12017_c0_g1_i7,blat.proc3825158.chain_2392,blat.proc3825158.chain_2393,blat.proc3825158.chain_2394,blat.proc3825158.chain_2396,blat.proc3825158.chain_2397	10
scaffold_16	alternate_exon	9427659	9428013	+	asmbl_16483	none	STRG.19543.2,blat.proc3825174.chain_456	2	STRG.19543.1,Trinity_GG_28010_c0_g1_i1	2
scaffold_13	retained_intron	4461177	4462126	-	asmbl_9631	none	STRG.15771.2,Trinity_GG_8857_c0_g1_i1,blat.proc3825156.chain_635,blat.proc3825156.chain_636	4	STRG.15771.1	1
scaffold_15	alt_acceptor	12391903	12391904	-	asmbl_14572,asmbl_14576	none	STRG.18695.3,STRG.18695.4	2	STRG.18695.2	1
scaffold_15	alt_acceptor	5322334	5322335	-	asmbl_14198	none	blat.proc3825156.chain_3083	1	STRG.18225.2,Trinity_GG_10261_c0_g1_i2,blat.proc3825156.chain_3084,blat.proc3825156.chain_3085	4
scaffold_17	alt_acceptor	14037320	14037321	-	asmbl_18401	none	STRG.20881.3	1	STRG.20881.1	1
scaffold_22	alternate_exon	10321920	10322031	+	asmbl_30356	none	blat.proc3825176.chain_2361	1	blat.proc3825176.chain_2362	1
scaffold_7	spliced_intron	11121409	11121518	-	asmbl_51150	none	STRG.9259.1,blat.proc3825152.chain_1605	2	Trinity_GG_5209_c0_g1_i1,blat.proc3825152.chain_1604	2
scaffold_1	spliced_intron	11174211	11174990	+	asmbl_2078,asmbl_2081	none	STRG.747.4,STRG.747.5,blat.proc3825164.chain_912	3	STRG.747.1,STRG.747.2,blat.proc3825164.chain_909,blat.proc3825164.chain_911,blat.proc3825164.chain_913,blat.proc3825164.chain_915	6
scaffold_17	retained_exon	14325767	14325815	-	asmbl_18422	none	STRG.20906.1,blat.proc3825158.chain_1885	2	Trinity_GG_11735_c0_g1_i2,blat.proc3825158.chain_1886	2
scaffold_5	spliced_intron	15044032	15044118	-	asmbl_44632,asmbl_44638,asmbl_44639	none	STRG.6698.2,STRG.6698.3,STRG.6698.4	3	Trinity_GG_3732_c0_g1_i1,blat.proc3825150.chain_2826	2
scaffold_19	retained_intron	10821455	10821556	+	asmbl_21663	none	blat.proc3825174.chain_3434	1	STRG.22421.1,STRG.22421.2,Trinity_GG_29712_c0_g1_i1,blat.proc3825174.chain_3431,blat.proc3825174.chain_3432	5
scaffold_10	retained_intron	13563746	13563878	-	asmbl_4910	none	STRG.12957.1,Trinity_GG_7263_c0_g1_i1,blat.proc3825154.chain_1593	3	STRG.12957.2,blat.proc3825154.chain_1592	2
scaffold_12	alt_donor	16175491	16175492	+	asmbl_8146	none	STRG.15373.3,Trinity_GG_25755_c0_g1_i3,blat.proc3825172.chain_87	3	STRG.15373.1,STRG.15373.2,Trinity_GG_25755_c0_g1_i1,blat.proc3825172.chain_89	4
scaffold_1	alternate_exon	12745370	12745659	-	asmbl_749,asmbl_754	none	STRG.895.3,STRG.895.4,blat.proc3825148.chain_851	3	STRG.895.1,STRG.895.5,blat.proc3825148.chain_850	3
scaffold_15	alt_acceptor	11402043	11402044	-	asmbl_14495	none	STRG.18606.3,blat.proc3825156.chain_3366	2	STRG.18606.5,blat.proc3825156.chain_3363	2
scaffold_19	alternate_exon	5637598	5637649	-	asmbl_22180	none	blat.proc3825158.chain_2948	1	blat.proc3825158.chain_2946,blat.proc3825158.chain_2947	2
scaffold_13	starts_in_intron	11380113	11380113	-	asmbl_10080	none	STRG.16301.8,blat.proc3825156.chain_1171	2	STRG.16301.1,STRG.16301.2,STRG.16301.3,STRG.16301.4,STRG.16301.5,blat.proc3825156.chain_1169,blat.proc3825156.chain_1170,blat.proc3825156.chain_1172,blat.proc3825156.chain_1173,blat.proc3825156.chain_1174	10
scaffold_5	retained_intron	18696880	18697441	-	asmbl_44854,asmbl_44857	none	STRG.6997.1,blat.proc3825150.chain_3103	2	blat.proc3825150.chain_3102	1
scaffold_6	starts_in_intron	4960040	4960040	-	asmbl_48373	none	blat.proc3825150.chain_3665	1	blat.proc3825150.chain_3661	1
scaffold_1	retained_intron	5739516	5739656	+	asmbl_1780	none	blat.proc3825164.chain_526	1	STRG.390.2,blat.proc3825164.chain_523,blat.proc3825164.chain_524,blat.proc3825164.chain_525,blat.proc3825164.chain_528,blat.proc3825164.chain_529,blat.proc3825164.chain_530	7
scaffold_20	alternate_exon	2645235	2645354	-	asmbl_25662	none	STRG.23011.1	1	STRG.23011.2	1
scaffold_11	retained_exon	12904599	12904706	-	asmbl_7101	none	STRG.14175.2	1	STRG.14175.1,blat.proc3825154.chain_2732	2
scaffold_8	alt_acceptor	10793555	10793556	+	asmbl_53181	none	STRG.10305.2,blat.proc3825168.chain_2846	2	STRG.10305.3,blat.proc3825168.chain_2847	2
scaffold_7	spliced_intron	12386811	12386895	-	asmbl_51206,asmbl_51207,asmbl_51209,asmbl_51210	none	blat.proc3825152.chain_1655,blat.proc3825152.chain_1657,blat.proc3825152.chain_1660,blat.proc3825152.chain_1661	4	blat.proc3825152.chain_1654,blat.proc3825152.chain_1658	2
scaffold_19	alt_acceptor	8820146	8820147	+	asmbl_21560,asmbl_21561	none	STRG.22335.2,STRG.22335.4,blat.proc3825174.chain_3343	3	STRG.22335.1	1
scaffold_6	ends_in_intron	11114554	11114554	-	asmbl_48739,asmbl_48740	none	STRG.7925.3,Trinity_GG_4505_c0_g1_i1,Trinity_GG_4505_c0_g1_i4,blat.proc3825152.chain_327,blat.proc3825152.chain_328	5	STRG.7925.1,STRG.7925.2	2
scaffold_14	skipped_exon	3161368	3162176	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11918	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i4,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	7	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2
scaffold_14	spliced_intron	4116590	4116724	+	asmbl_11971,asmbl_11972	none	STRG.16963.1,STRG.16963.3,Trinity_GG_26646_c0_g1_i3,Trinity_GG_26646_c0_g1_i5,blat.proc3825172.chain_1740,blat.proc3825172.chain_1741	6	STRG.16963.2,Trinity_GG_26646_c0_g1_i1,blat.proc3825172.chain_1739	3
scaffold_3	spliced_intron	10946294	10946668	-	asmbl_39125,asmbl_39128	none	STRG.3547.1,blat.proc3825148.chain_3417,blat.proc3825148.chain_3419	3	blat.proc3825148.chain_3418	1
scaffold_10	starts_in_intron	17194115	17194115	+	asmbl_3749,asmbl_3751	none	STRG.13168.2,Trinity_GG_24554_c0_g1_i2,blat.proc3825170.chain_1732	3	STRG.13168.1	1
scaffold_23	alternate_exon	2588166	2592038	-	asmbl_30744	none	STRG.25725.2,blat.proc3825160.chain_2777	2	blat.proc3825160.chain_2778	1
scaffold_16	retained_intron	14437676	14437729	+	asmbl_16675	none	STRG.19815.1,Trinity_GG_28176_c2_g1_i1,blat.proc3825174.chain_725	3	STRG.19815.2	1
scaffold_6	ends_in_intron	18018859	18018859	+	asmbl_47802	none	Trinity_GG_21980_c1_g1_i1,blat.proc3825168.chain_942	2	STRG.8489.1,STRG.8489.2,blat.proc3825168.chain_941	3
scaffold_17	alt_acceptor	1289822	1289823	-	asmbl_17685	none	STRG.19964.2	1	blat.proc3825158.chain_976	1
scaffold_18	spliced_intron	11472870	11472947	+	asmbl_20945	none	STRG.21681.1,blat.proc3825174.chain_2702	2	STRG.21681.2,Trinity_GG_29284_c0_g1_i2,blat.proc3825174.chain_2703	3
scaffold_15	ends_in_intron	8620313	8620313	+	asmbl_15342,asmbl_15343	none	Trinity_GG_27395_c0_g1_i4,blat.proc3825172.chain_3042,blat.proc3825172.chain_3046	3	STRG.18409.1,STRG.18409.2,blat.proc3825172.chain_3043,blat.proc3825172.chain_3044,blat.proc3825172.chain_3045	5
scaffold_13	alt_donor	15364039	15364040	+	asmbl_11496	none	Trinity_GG_26428_c0_g1_i1	1	STRG.16579.1,STRG.16579.7,Trinity_GG_26428_c0_g1_i3	3
scaffold_5	retained_intron	9711452	9711983	+	asmbl_45635	none	blat.proc3825166.chain_2496	1	STRG.6283.2,blat.proc3825166.chain_2495	2
scaffold_12	retained_exon	7422560	7422595	-	asmbl_8585	none	STRG.14825.3,blat.proc3825154.chain_3337	2	STRG.14825.2,blat.proc3825154.chain_3338	2
scaffold_24	alt_acceptor	7173009	7173010	-	asmbl_33016,asmbl_33017,asmbl_33018	none	STRG.26767.2,blat.proc3825162.chain_74,blat.proc3825162.chain_76	3	STRG.26767.1	1
scaffold_13	alternate_exon	5192058	5192137	-	asmbl_9679	none	STRG.15820.1,blat.proc3825156.chain_683	2	STRG.15820.2	1
scaffold_2	alt_acceptor	5706732	5706733	-	asmbl_23153,asmbl_23157	none	STRG.1962.1,blat.proc3825148.chain_1961,blat.proc3825148.chain_1964	3	STRG.1962.2,blat.proc3825148.chain_1963	2
scaffold_9	alternate_exon	16353400	16353525	-	asmbl_55570	none	STRG.11789.2	1	STRG.11789.1,Trinity_GG_6509_c0_g1_i1,blat.proc3825154.chain_241	3
scaffold_12	skipped_exon	2926727	2928950	-	asmbl_8332	none	STRG.14526.1	1	STRG.14526.3	1
scaffold_8	alternate_exon	11919231	11919300	-	asmbl_52173	none	STRG.10389.2	1	STRG.10389.1	1
scaffold_15	ends_in_intron	11494482	11494482	-	asmbl_14518	none	Trinity_GG_10468_c0_g1_i3,blat.proc3825156.chain_3488	2	STRG.18613.2	1
scaffold_3	starts_in_intron	14576256	14576256	-	asmbl_39399,asmbl_39401	none	STRG.3797.3,blat.proc3825148.chain_3742	2	STRG.3797.1,blat.proc3825148.chain_3741	2
scaffold_8	skipped_exon	11101511	11102291	-	asmbl_52131	none	STRG.10326.2,blat.proc3825152.chain_2585	2	STRG.10326.1,STRG.10326.3,blat.proc3825152.chain_2586	3
scaffold_14	alt_acceptor	582706	582707	+	asmbl_11773	none	STRG.16740.4	1	STRG.16740.1,STRG.16740.2,STRG.16740.3,Trinity_GG_26527_c0_g1_i4,blat.proc3825172.chain_1517	5
scaffold_1	starts_in_intron	12448823	12448823	+	asmbl_2222	none	Trinity_GG_17840_c0_g1_i3,blat.proc3825164.chain_1025	2	STRG.859.1,STRG.859.3,Trinity_GG_17840_c0_g1_i1,Trinity_GG_17840_c0_g1_i6,blat.proc3825164.chain_1028,blat.proc3825164.chain_1029	6
scaffold_1	retained_intron	10460558	10460718	-	asmbl_589	none	Trinity_GG_382_c0_g1_i1,blat.proc3825148.chain_711	2	STRG.684.1,blat.proc3825148.chain_712	2
scaffold_13	starts_in_intron	10228190	10228190	-	asmbl_10057	none	blat.proc3825156.chain_1117	1	STRG.16258.1,STRG.16258.2,STRG.16258.3,STRG.16258.4,blat.proc3825156.chain_1115,blat.proc3825156.chain_1116,blat.proc3825156.chain_1118	7
scaffold_7	starts_in_intron	13243466	13243466	+	asmbl_50336	none	STRG.9439.2	1	STRG.9439.1,blat.proc3825168.chain_1980	2
scaffold_17	skipped_exon	2354078	2358162	+	asmbl_18639	none	STRG.20030.7	1	STRG.20030.1,blat.proc3825174.chain_907,blat.proc3825174.chain_909	3
scaffold_7	retained_exon	5928804	5928823	+	asmbl_49828	none	STRG.8902.3,Trinity_GG_22209_c0_g1_i5,blat.proc3825168.chain_1375	3	STRG.8902.2,Trinity_GG_22209_c0_g1_i4,blat.proc3825168.chain_1376	3
scaffold_27	starts_in_intron	383179	383179	-	asmbl_36680,asmbl_36681,asmbl_36682	none	STRG.28567.2,STRG.28567.4,STRG.28567.5,Trinity_GG_15949_c1_g1_i4,blat.proc3825162.chain_1733,blat.proc3825162.chain_1734	6	STRG.28567.1,STRG.28567.3,blat.proc3825162.chain_1731,blat.proc3825162.chain_1735	4
scaffold_12	retained_intron	4721793	4722413	-	asmbl_8434,asmbl_8437	none	STRG.14649.1,blat.proc3825154.chain_3100	2	STRG.14649.2,STRG.14649.3,STRG.14649.4,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	6
scaffold_27	spliced_intron	3090524	3090653	-	asmbl_36886,asmbl_36887,asmbl_36889,asmbl_36890,asmbl_36893	none	STRG.28796.1,STRG.28796.2,STRG.28796.3,STRG.28796.5,STRG.28796.6,blat.proc3825162.chain_2064,blat.proc3825162.chain_2065,blat.proc3825162.chain_2068,blat.proc3825162.chain_2069	9	STRG.28796.4,Trinity_GG_16154_c0_g1_i4,blat.proc3825162.chain_2067	3
scaffold_6	retained_intron	7936991	7937104	-	asmbl_48512	none	blat.proc3825152.chain_70	1	STRG.7676.3	1
scaffold_27	retained_intron	4755122	4755207	+	asmbl_36314	none	Trinity_GG_33333_c2_g1_i1	1	STRG.28913.1	1
scaffold_8	alternate_exon	2690276	2690399	+	asmbl_52737	none	STRG.9810.3	1	STRG.9810.1,STRG.9810.2	2
scaffold_2	alternate_exon	8855808	8855883	+	asmbl_24647	none	STRG.2137.3	1	STRG.2137.1,STRG.2137.2,Trinity_GG_18519_c0_g1_i1,Trinity_GG_18519_c0_g1_i2,blat.proc3825164.chain_2322,blat.proc3825164.chain_2323	6
scaffold_12	alternate_exon	14129668	14129741	+	asmbl_8053,asmbl_8054	none	STRG.15242.1,STRG.15242.2,blat.proc3825170.chain_3741	3	STRG.15242.3	1
scaffold_19	starts_in_intron	1496493	1496493	+	asmbl_21243,asmbl_21246	none	STRG.21912.4,STRG.21912.5	2	STRG.21912.1,STRG.21912.2,STRG.21912.3,blat.proc3825174.chain_2936	4
scaffold_13	spliced_intron	4461177	4462126	-	asmbl_9633	none	STRG.15771.1	1	STRG.15771.2,Trinity_GG_8857_c0_g1_i1,blat.proc3825156.chain_635,blat.proc3825156.chain_636	4
scaffold_6	alt_donor	4319469	4319470	+	asmbl_46880	none	STRG.7409.2,blat.proc3825166.chain_3614	2	blat.proc3825166.chain_3613	1
scaffold_18	retained_intron	1944645	1944740	-	asmbl_19674	none	STRG.21082.2,blat.proc3825158.chain_2037	2	STRG.21082.1,blat.proc3825158.chain_2036	2
scaffold_17	retained_intron	7006596	7009068	-	asmbl_18019	none	blat.proc3825158.chain_1421	1	STRG.20364.1,blat.proc3825158.chain_1423	2
scaffold_5	retained_exon	13802962	13803018	-	asmbl_44565,asmbl_44566	none	STRG.6602.3,blat.proc3825150.chain_2815	2	STRG.6602.1,blat.proc3825150.chain_2813,blat.proc3825150.chain_2814	3
scaffold_3	alternate_exon	12577657	12577680	+	asmbl_40411	none	blat.proc3825166.chain_170	1	STRG.3649.1,blat.proc3825166.chain_171	2
scaffold_26	retained_exon	1994577	1994934	+	asmbl_34728	none	STRG.27942.2	1	blat.proc3825178.chain_995	1
scaffold_27	alternate_exon	9435083	9435140	-	asmbl_37138	none	STRG.29189.4,Trinity_GG_16335_c0_g1_i3,blat.proc3825162.chain_2346	3	STRG.29189.1,blat.proc3825162.chain_2345	2
scaffold_5	alt_acceptor	3630369	3630370	+	asmbl_45229	none	STRG.5836.2	1	STRG.5836.1	1
scaffold_1	alt_donor	13639198	13639199	-	asmbl_837	none	STRG.982.1,blat.proc3825148.chain_955	2	STRG.982.2	1
scaffold_19	alt_donor	625366	625367	-	asmbl_21987	none	STRG.21845.1,blat.proc3825158.chain_2686	2	STRG.21845.2,STRG.21845.3	2
scaffold_12	alt_acceptor	10206001	10206002	+	asmbl_7915	none	STRG.14997.1,blat.proc3825170.chain_3565	2	STRG.14997.2	1
scaffold_7	retained_intron	817670	817822	+	asmbl_49565,asmbl_49566	none	blat.proc3825168.chain_1129,blat.proc3825168.chain_1130	2	STRG.8623.1,STRG.8623.2,blat.proc3825168.chain_1125,blat.proc3825168.chain_1127	4
scaffold_24	skipped_exon	4280160	4280658	+	asmbl_32178	none	STRG.26586.2,blat.proc3825176.chain_3528	2	STRG.26586.1,blat.proc3825176.chain_3529	2
scaffold_5	starts_in_intron	17225169	17225169	+	asmbl_46152	none	blat.proc3825166.chain_3073	1	STRG.6896.1,blat.proc3825166.chain_3076	2
scaffold_1	alt_acceptor	5769922	5769923	+	asmbl_1794	none	STRG.384.2,blat.proc3825164.chain_435	2	STRG.384.1,blat.proc3825164.chain_436	2
scaffold_16	alternate_exon	10446839	10448429	+	asmbl_16536,asmbl_16538	none	STRG.19614.2,STRG.19614.4,blat.proc3825174.chain_484	3	blat.proc3825174.chain_489	1
scaffold_26	spliced_intron	5033716	5033863	+	asmbl_34944,asmbl_34955	none	STRG.28240.3,blat.proc3825178.chain_1179,blat.proc3825178.chain_1182	3	STRG.28240.1,STRG.28240.2,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1172,blat.proc3825178.chain_1174,blat.proc3825178.chain_1175,blat.proc3825178.chain_1177,blat.proc3825178.chain_1180	9
scaffold_26	alt_donor	3519144	3519145	+	asmbl_34783	none	STRG.28028.2,blat.proc3825178.chain_1068	2	STRG.28028.1,blat.proc3825178.chain_1066	2
scaffold_1	spliced_intron	11066267	11066373	+	asmbl_2052	none	STRG.724.1,Trinity_GG_17749_c0_g1_i1,blat.proc3825164.chain_829	3	Trinity_GG_17749_c0_g1_i2,blat.proc3825164.chain_830	2
scaffold_1	spliced_intron	18033265	18033608	-	asmbl_1081	none	STRG.1269.2	1	Trinity_GG_616_c0_g1_i1,blat.proc3825148.chain_1179	2
scaffold_26	spliced_intron	9082921	9083032	-	asmbl_35764,asmbl_35765,asmbl_35766,asmbl_35767	none	STRG.28473.1,STRG.28473.2,STRG.28473.3,blat.proc3825162.chain_1681,blat.proc3825162.chain_1682,blat.proc3825162.chain_1684	6	STRG.28473.4,Trinity_GG_15928_c0_g1_i1,blat.proc3825162.chain_1683	3
scaffold_2	skipped_exon	7863293	7865249	-	asmbl_23288	none	STRG.2081.2,blat.proc3825148.chain_2098	2	STRG.2081.1,blat.proc3825148.chain_2097	2
scaffold_11	alt_acceptor	1156381	1156382	+	asmbl_5324,asmbl_5325	none	STRG.13311.1,Trinity_GG_24584_c0_g1_i2,Trinity_GG_24584_c0_g1_i5,blat.proc3825170.chain_1776,blat.proc3825170.chain_1777	5	Trinity_GG_24584_c0_g1_i1,blat.proc3825170.chain_1778	2
scaffold_8	alt_donor	15150580	15150581	-	asmbl_52324	none	STRG.10544.2	1	STRG.10544.1,blat.proc3825152.chain_2780	2
scaffold_20	retained_intron	8292472	8293196	+	asmbl_26756,asmbl_26758	none	STRG.23374.1,STRG.23374.4,Trinity_GG_30200_c0_g1_i3,blat.proc3825176.chain_520	4	STRG.23374.2,STRG.23374.3,blat.proc3825176.chain_517,blat.proc3825176.chain_518,blat.proc3825176.chain_519	5
scaffold_10	retained_intron	1794196	1794683	+	asmbl_2959	none	Trinity_GG_24010_c0_g1_i3,blat.proc3825170.chain_789	2	blat.proc3825170.chain_790	1
scaffold_6	retained_intron	15945144	15945206	+	asmbl_47680,asmbl_47681,asmbl_47682	none	STRG.8324.2,STRG.8324.3,STRG.8324.4	3	STRG.8324.1	1
scaffold_10	spliced_intron	9074945	9075599	+	asmbl_3365	none	STRG.12659.2	1	STRG.12659.1,blat.proc3825170.chain_1290,blat.proc3825170.chain_1291	3
scaffold_16	alternate_exon	14486640	14486677	+	asmbl_16683	none	blat.proc3825174.chain_747	1	STRG.19826.2	1
scaffold_14	retained_intron	2128876	2129082	-	asmbl_12922	none	blat.proc3825156.chain_1672	1	STRG.16836.1,blat.proc3825156.chain_1673	2
scaffold_7	alternate_exon	8197647	8200929	+	asmbl_49964,asmbl_49966	none	STRG.9057.1,Trinity_GG_22323_c0_g1_i4,blat.proc3825168.chain_1545,blat.proc3825168.chain_1547,blat.proc3825168.chain_1548	5	STRG.9057.2,blat.proc3825168.chain_1549,blat.proc3825168.chain_1550	3
scaffold_5	skipped_exon	10183015	10183671	-	asmbl_44319	none	STRG.6318.1	1	blat.proc3825150.chain_2510	1
scaffold_23	starts_in_intron	4950204	4950204	+	asmbl_31541	none	Trinity_GG_31594_c0_g1_i5,blat.proc3825176.chain_2823	2	STRG.25886.1,Trinity_GG_31594_c0_g1_i3,blat.proc3825176.chain_2822	3
scaffold_8	alt_donor	18250261	18250262	-	asmbl_52527,asmbl_52529	none	STRG.10728.3,blat.proc3825152.chain_3015,blat.proc3825152.chain_3016	3	STRG.10728.4,blat.proc3825152.chain_3011,blat.proc3825152.chain_3012,blat.proc3825152.chain_3013,blat.proc3825152.chain_3018	5
scaffold_6	starts_in_intron	8034499	8034499	-	asmbl_48530	none	blat.proc3825152.chain_64	1	STRG.7684.1,blat.proc3825152.chain_63	2
scaffold_16	alternate_exon	8715635	8717356	-	asmbl_17252	none	STRG.19504.1,Trinity_GG_10933_c0_g1_i1,blat.proc3825158.chain_613,blat.proc3825158.chain_624	4	STRG.19504.2,STRG.19504.3,blat.proc3825158.chain_625,blat.proc3825158.chain_627	4
scaffold_4	retained_intron	6304956	6305145	+	asmbl_41390,asmbl_41391,asmbl_41393,asmbl_41395	none	STRG.4503.2,STRG.4503.3,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_920,blat.proc3825166.chain_921	7	STRG.4503.1,Trinity_GG_19783_c0_g1_i1,blat.proc3825166.chain_919,blat.proc3825166.chain_922	4
scaffold_20	alt_acceptor	8115271	8115272	-	asmbl_25961	none	STRG.23361.1,blat.proc3825160.chain_486	2	STRG.23361.2,blat.proc3825160.chain_484,blat.proc3825160.chain_485	3
scaffold_21	alt_acceptor	5610584	5610585	-	asmbl_27682	none	STRG.24097.1	1	STRG.24097.2	1
scaffold_26	alt_donor	7487924	7487925	+	asmbl_35117	none	STRG.28384.2,blat.proc3825178.chain_1472	2	blat.proc3825178.chain_1471	1
scaffold_18	starts_in_intron	9633517	9633517	-	asmbl_20065	none	blat.proc3825158.chain_2477	1	STRG.21576.1,STRG.21576.2,blat.proc3825158.chain_2478,blat.proc3825158.chain_2480,blat.proc3825158.chain_2481	5
scaffold_3	starts_in_intron	17455921	17455921	+	asmbl_40680	none	Trinity_GG_19520_c0_g1_i1,blat.proc3825166.chain_435	2	STRG.3978.1	1
scaffold_12	alternate_exon	6414511	6414581	+	asmbl_7684	none	blat.proc3825170.chain_3275	1	STRG.14753.1,STRG.14753.2,blat.proc3825170.chain_3273,blat.proc3825170.chain_3274	4
scaffold_5	retained_intron	5972401	5972548	+	asmbl_45383	none	STRG.6011.1	1	STRG.6011.2	1
scaffold_15	alt_donor	10632747	10632748	+	asmbl_15459	none	STRG.18550.1,blat.proc3825172.chain_3204	2	STRG.18550.2,STRG.18550.3,blat.proc3825172.chain_3203	3
scaffold_12	spliced_intron	14123567	14123697	-	asmbl_8988,asmbl_8990,asmbl_8992	none	STRG.15244.1,STRG.15244.2,STRG.15244.3,blat.proc3825156.chain_75	4	Trinity_GG_8555_c0_g1_i1,Trinity_GG_8555_c0_g1_i3,blat.proc3825156.chain_77	3
scaffold_3	alt_donor	16347397	16347398	-	asmbl_39499,asmbl_39501	none	STRG.3910.1,blat.proc3825150.chain_114,blat.proc3825150.chain_115	3	STRG.3910.3	1
scaffold_24	skipped_exon	7099268	7100129	+	asmbl_32367	none	STRG.26761.2	1	STRG.26761.1	1
scaffold_4	ends_in_intron	4910587	4910587	+	asmbl_41315	none	blat.proc3825166.chain_865	1	STRG.4387.1,STRG.4387.2,blat.proc3825166.chain_866	3
scaffold_3	alternate_exon	17375094	17375170	+	asmbl_40672	none	STRG.3968.2,Trinity_GG_19540_c0_g1_i1	2	STRG.3968.1,blat.proc3825166.chain_473	2
scaffold_3	spliced_intron	4282352	4282433	+	asmbl_39994	none	STRG.3123.2	1	STRG.3123.1	1
scaffold_22	retained_intron	9340082	9340165	-	asmbl_29537	none	STRG.25279.1,blat.proc3825160.chain_2434	2	STRG.25279.3	1
scaffold_2	spliced_intron	15267793	15267920	+	asmbl_25000	none	blat.proc3825164.chain_2604	1	blat.proc3825164.chain_2603	1
scaffold_26	alt_acceptor	8987675	8987676	+	asmbl_35189	none	STRG.28461.2,Trinity_GG_33062_c0_g1_i1,blat.proc3825178.chain_1588	3	STRG.28461.1	1
scaffold_5	spliced_intron	18255195	18255273	+	asmbl_46227	none	STRG.6961.1,Trinity_GG_21150_c0_g1_i1,blat.proc3825166.chain_3197	3	Trinity_GG_21150_c0_g1_i4,blat.proc3825166.chain_3198	2
scaffold_3	starts_in_intron	14451342	14451342	-	asmbl_39375	none	blat.proc3825148.chain_3619,blat.proc3825148.chain_3620	2	STRG.3787.1,blat.proc3825148.chain_3618	2
scaffold_25	ends_in_intron	411809	411809	-	asmbl_33982	none	Trinity_GG_15180_c1_g1_i2,blat.proc3825162.chain_471	2	STRG.27083.1	1
scaffold_1	alt_acceptor	5646101	5646102	+	asmbl_1739,asmbl_1741	none	STRG.360.1,STRG.360.2,blat.proc3825164.chain_424,blat.proc3825164.chain_425	4	STRG.360.3,STRG.360.4,STRG.360.5,blat.proc3825164.chain_426,blat.proc3825164.chain_427,blat.proc3825164.chain_428	6
scaffold_17	alternate_exon	5071270	5071327	+	asmbl_18807,asmbl_18808	none	STRG.20234.4,STRG.20234.5	2	STRG.20234.1,STRG.20234.2,STRG.20234.3,Trinity_GG_28366_c0_g1_i1,Trinity_GG_28366_c0_g1_i2,blat.proc3825174.chain_1045,blat.proc3825174.chain_1046	7
scaffold_6	starts_in_intron	18719540	18719540	-	asmbl_49270	none	STRG.8539.2	1	STRG.8539.1	1
scaffold_15	starts_in_intron	7801128	7801128	-	asmbl_14311	none	blat.proc3825156.chain_3206	1	STRG.18360.1,blat.proc3825156.chain_3204,blat.proc3825156.chain_3205	3
scaffold_5	alt_donor	8763952	8763953	-	asmbl_44236	none	STRG.6212.2,Trinity_GG_3495_c0_g1_i1,blat.proc3825150.chain_2407	3	Trinity_GG_3495_c0_g1_i3,blat.proc3825150.chain_2406	2
scaffold_4	spliced_intron	16137284	16137576	-	asmbl_43142	none	STRG.5184.4,blat.proc3825150.chain_1340	2	STRG.5184.2,STRG.5184.3,blat.proc3825150.chain_1342	3
scaffold_28	retained_exon	9268985	9269134	+	asmbl_37780	none	STRG.29970.2	1	STRG.29970.1,Trinity_GG_33883_c0_g1_i2,blat.proc3825178.chain_3088	3
scaffold_12	alt_donor	9680918	9680919	-	asmbl_8687	none	STRG.14943.1,blat.proc3825154.chain_3469	2	STRG.14943.2	1
scaffold_2	alternate_exon	17615256	17619276	+	asmbl_25187	none	STRG.2653.3,Trinity_GG_18813_c0_g1_i1,Trinity_GG_18821_c0_g1_i1,blat.proc3825164.chain_2939	4	blat.proc3825164.chain_2944	1
scaffold_25	retained_exon	6438069	6438157	+	asmbl_33628	none	STRG.27528.2,blat.proc3825178.chain_615	2	STRG.27528.3	1
scaffold_15	spliced_intron	12422505	12422732	+	asmbl_15558,asmbl_15563	none	STRG.18696.1,blat.proc3825172.chain_3325,blat.proc3825172.chain_3326	3	blat.proc3825172.chain_3323,blat.proc3825172.chain_3324	2
scaffold_14	spliced_intron	6291638	6291779	+	asmbl_12063,asmbl_12064	none	STRG.17083.1,Trinity_GG_26712_c0_g1_i1,blat.proc3825172.chain_1843,blat.proc3825172.chain_1844	4	Trinity_GG_26712_c0_g1_i5,blat.proc3825172.chain_1842	2
scaffold_19	alt_donor	13155524	13155525	-	asmbl_22605	none	STRG.22639.1,blat.proc3825158.chain_3472	2	STRG.22639.2,blat.proc3825158.chain_3470,blat.proc3825158.chain_3471	3
scaffold_27	ends_in_intron	1943399	1943399	+	asmbl_36042	none	STRG.28676.2,blat.proc3825178.chain_1749	2	STRG.28676.1,blat.proc3825178.chain_1748	2
scaffold_18	alt_donor	815143	815144	+	asmbl_20321	none	STRG.21006.2,blat.proc3825174.chain_1950	2	STRG.21006.1,blat.proc3825174.chain_1947,blat.proc3825174.chain_1948	3
scaffold_3	ends_in_intron	9800493	9800493	+	asmbl_40236	none	blat.proc3825164.chain_3748	1	STRG.3457.2	1
scaffold_7	alt_donor	2310200	2310201	+	asmbl_49632	none	STRG.8670.2	1	STRG.8670.1,STRG.8670.3,Trinity_GG_22081_c0_g1_i1,blat.proc3825168.chain_1166	4
scaffold_13	retained_intron	7192850	7192955	-	asmbl_9859	none	STRG.16016.4,Trinity_GG_9030_c0_g1_i1,blat.proc3825156.chain_959	3	STRG.16016.5	1
scaffold_19	starts_in_intron	10072074	10072074	+	asmbl_21615	none	Trinity_GG_29630_c0_g1_i6,blat.proc3825174.chain_3295	2	STRG.22393.1,blat.proc3825174.chain_3292,blat.proc3825174.chain_3296	3
scaffold_28	ends_in_intron	5579986	5579986	+	asmbl_37597	none	STRG.29692.3	1	STRG.29692.1,STRG.29692.2,Trinity_GG_33772_c0_g1_i2,Trinity_GG_33772_c0_g1_i4,Trinity_GG_33772_c0_g1_i5,blat.proc3825178.chain_2876,blat.proc3825178.chain_2878,blat.proc3825178.chain_2879	8
scaffold_1	alt_acceptor	16715908	16715909	-	asmbl_1009,asmbl_1011	none	STRG.1177.2,STRG.1177.3,blat.proc3825148.chain_1084	3	STRG.1177.1,STRG.1177.4,Trinity_GG_569_c0_g1_i3,blat.proc3825148.chain_1082,blat.proc3825148.chain_1083	5
scaffold_14	skipped_exon	7460431	7460908	-	asmbl_13208	none	STRG.17189.4	1	STRG.17189.1,STRG.17189.3,blat.proc3825156.chain_1929	3
scaffold_19	starts_in_intron	6685928	6685928	+	asmbl_21434	none	blat.proc3825174.chain_3126	1	STRG.22189.1,Trinity_GG_29526_c0_g1_i1,blat.proc3825174.chain_3124	3
scaffold_5	retained_intron	8792001	8792555	+	asmbl_45578	none	blat.proc3825166.chain_2450	1	STRG.6219.1,Trinity_GG_20718_c0_g1_i5,blat.proc3825166.chain_2446,blat.proc3825166.chain_2447,blat.proc3825166.chain_2448	5
scaffold_15	retained_intron	12435253	12435567	+	asmbl_15567,asmbl_15568,asmbl_15569	none	blat.proc3825172.chain_3337,blat.proc3825172.chain_3338,blat.proc3825172.chain_3340,blat.proc3825172.chain_3341,blat.proc3825172.chain_3343	5	STRG.18701.1,blat.proc3825172.chain_3335,blat.proc3825172.chain_3339,blat.proc3825172.chain_3344	4
scaffold_25	alt_donor	1439078	1439079	+	asmbl_33376,asmbl_33377	none	STRG.27180.1,STRG.27180.3,blat.proc3825178.chain_326	3	STRG.27180.2,Trinity_GG_32306_c0_g1_i1,blat.proc3825178.chain_327	3
scaffold_16	alternate_exon	5508853	5509077	-	asmbl_17120	none	STRG.19312.3,blat.proc3825158.chain_365	2	STRG.19312.1,STRG.19312.2,Trinity_GG_10797_c1_g1_i3,blat.proc3825158.chain_364	4
scaffold_4	retained_intron	5651423	5651635	-	asmbl_42618,asmbl_42623	none	STRG.4472.2,blat.proc3825150.chain_658,blat.proc3825150.chain_668	3	STRG.4472.1,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_663,blat.proc3825150.chain_664,blat.proc3825150.chain_666,blat.proc3825150.chain_667	8
scaffold_1	retained_exon	22372256	22372575	+	asmbl_2690,asmbl_2691	none	STRG.1491.3,STRG.1491.4	2	STRG.1491.1	1
scaffold_13	alternate_exon	7505395	7507451	-	asmbl_9889	none	blat.proc3825156.chain_909	1	STRG.16047.4,blat.proc3825156.chain_902	2
scaffold_14	alt_acceptor	2758018	2758019	-	asmbl_12972	none	STRG.16875.1,Trinity_GG_9450_c0_g1_i2,blat.proc3825156.chain_1684	3	STRG.16875.2	1
scaffold_1	starts_in_intron	12928633	12928633	+	asmbl_2277	none	Trinity_GG_17881_c0_g1_i2,blat.proc3825164.chain_1098	2	STRG.927.1,Trinity_GG_17881_c0_g1_i1,blat.proc3825164.chain_1099	3
scaffold_20	alt_acceptor	2074902	2074903	+	asmbl_26465	none	STRG.22958.2	1	STRG.22958.1,blat.proc3825176.chain_136	2
scaffold_3	spliced_intron	935338	935527	-	asmbl_38683,asmbl_38685	none	blat.proc3825148.chain_2836,blat.proc3825148.chain_2838	2	blat.proc3825148.chain_2837	1
scaffold_8	alt_donor	16576642	16576643	-	asmbl_52431	none	STRG.10634.2	1	STRG.10634.1,blat.proc3825152.chain_2879,blat.proc3825152.chain_2880	3
scaffold_16	alternate_exon	1881631	1883627	+	asmbl_16106	none	Trinity_GG_27792_c0_g1_i3,blat.proc3825174.chain_29	2	Trinity_GG_27792_c0_g1_i1,blat.proc3825174.chain_31	2
scaffold_11	ends_in_intron	8724031	8724031	+	asmbl_5830,asmbl_5831,asmbl_5833	none	STRG.13892.1,STRG.13892.3,STRG.13892.4,Trinity_GG_24977_c0_g1_i2,Trinity_GG_24977_c0_g1_i5,blat.proc3825170.chain_2457,blat.proc3825170.chain_2461	7	STRG.13892.2	1
scaffold_5	alternate_exon	18263892	18266054	+	asmbl_46235,asmbl_46238	none	STRG.6968.1,blat.proc3825166.chain_3184,blat.proc3825166.chain_3190	3	STRG.6968.4	1
scaffold_5	alternate_exon	15549025	15549165	-	asmbl_44698,asmbl_44699	none	STRG.6747.2,STRG.6747.3	2	STRG.6747.1,blat.proc3825150.chain_2941	2
scaffold_26	spliced_intron	6659499	6659582	+	asmbl_35097,asmbl_35098	none	STRG.28376.1,blat.proc3825178.chain_1443,blat.proc3825178.chain_1447	3	blat.proc3825178.chain_1445	1
scaffold_11	retained_intron	8080714	8080789	+	asmbl_5714	none	Trinity_GG_24895_c0_g1_i5,blat.proc3825170.chain_2309	2	STRG.13816.1,Trinity_GG_24895_c0_g1_i1,Trinity_GG_24895_c0_g1_i2,Trinity_GG_24895_c0_g1_i3,blat.proc3825170.chain_2310,blat.proc3825170.chain_2311,blat.proc3825170.chain_2312	7
scaffold_19	skipped_exon	9453805	9454559	+	asmbl_21597	none	STRG.22377.2,blat.proc3825174.chain_3390	2	STRG.22377.1,blat.proc3825174.chain_3388	2
scaffold_25	alt_acceptor	7735164	7735165	+	asmbl_33677	none	STRG.27598.2	1	STRG.27598.1,blat.proc3825178.chain_679	2
scaffold_13	spliced_intron	5802919	5803440	+	asmbl_10898,asmbl_10899,asmbl_10902	none	STRG.15896.1,STRG.15896.2,blat.proc3825172.chain_706	3	blat.proc3825172.chain_711	1
scaffold_4	retained_intron	4103839	4104240	+	asmbl_41230	none	STRG.4316.1,Trinity_GG_19673_c0_g1_i6,blat.proc3825166.chain_690,blat.proc3825166.chain_693,blat.proc3825166.chain_697	5	STRG.4316.2,blat.proc3825166.chain_696	2
scaffold_8	alternate_exon	10145562	10145617	+	asmbl_53148	none	STRG.10270.1,Trinity_GG_23020_c0_g1_i2,blat.proc3825168.chain_2829	3	blat.proc3825168.chain_2828	1
scaffold_20	spliced_intron	1664651	1664742	+	asmbl_26440	none	STRG.22904.2	1	STRG.22904.1,blat.proc3825176.chain_104,blat.proc3825176.chain_105	3
scaffold_6	alt_donor	12629495	12629496	-	asmbl_48836	none	STRG.8021.2,blat.proc3825152.chain_413	2	STRG.8021.1,Trinity_GG_4556_c0_g1_i2,blat.proc3825152.chain_411,blat.proc3825152.chain_412	4
scaffold_17	retained_exon	2354832	2355463	+	asmbl_18638,asmbl_18640	none	STRG.20030.2,STRG.20030.4	2	STRG.20030.5,STRG.20030.7	2
scaffold_14	alternate_exon	15105351	15115148	+	asmbl_12563	none	blat.proc3825172.chain_2454	1	Trinity_GG_27062_c0_g1_i4,blat.proc3825172.chain_2453	2
scaffold_21	ends_in_intron	5518851	5518851	-	asmbl_27665	none	Trinity_GG_13443_c1_g1_i4,blat.proc3825160.chain_1264	2	STRG.24083.1	1
scaffold_6	starts_in_intron	17831785	17831785	+	asmbl_47788	none	STRG.8472.4,blat.proc3825168.chain_935,blat.proc3825168.chain_936	3	STRG.8472.2,Trinity_GG_34007_c0_g1_i1,blat.proc3825168.chain_937	3
scaffold_28	spliced_intron	7720499	7721514	+	asmbl_37707	none	blat.proc3825178.chain_3018	1	STRG.29845.2,Trinity_GG_33846_c1_g1_i6,blat.proc3825178.chain_3017,blat.proc3825178.chain_3021	4
scaffold_1	spliced_intron	12422430	12422995	+	asmbl_2217	none	STRG.857.2	1	STRG.857.1,Trinity_GG_17798_c0_g1_i1,Trinity_GG_17798_c0_g1_i3,blat.proc3825164.chain_939,blat.proc3825164.chain_940	5
scaffold_4	retained_intron	19604777	19604824	-	asmbl_43469	none	STRG.5550.1	1	STRG.5550.2	1
scaffold_26	spliced_intron	2261353	2261420	+	asmbl_34739	none	STRG.27956.2	1	STRG.27956.1	1
scaffold_1	skipped_exon	849299	850633	+	asmbl_1423	none	STRG.42.3	1	STRG.42.4	1
scaffold_4	retained_exon	6947400	6947441	+	asmbl_41432,asmbl_41433	none	STRG.4536.1,STRG.4536.3,blat.proc3825166.chain_915,blat.proc3825166.chain_917	4	STRG.4536.2,blat.proc3825166.chain_914	2
scaffold_5	retained_intron	9086221	9086396	+	asmbl_45601	none	Trinity_GG_20732_c0_g1_i3,blat.proc3825166.chain_2478	2	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2477,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	7
scaffold_25	ends_in_intron	780188	780188	-	asmbl_33999	none	blat.proc3825162.chain_497	1	STRG.27134.1,blat.proc3825162.chain_494	2
scaffold_5	retained_exon	2167501	2167719	-	asmbl_43874	none	STRG.5754.1,blat.proc3825150.chain_1989	2	STRG.5754.2	1
scaffold_2	spliced_intron	4124203	4124621	-	asmbl_23050,asmbl_23051	none	STRG.1854.1,Trinity_GG_1007_c0_g1_i1,Trinity_GG_1007_c0_g1_i2,blat.proc3825148.chain_1790,blat.proc3825148.chain_1791	5	Trinity_GG_1007_c1_g1_i1,blat.proc3825148.chain_1792	2
scaffold_6	ends_in_intron	15470496	15470496	-	asmbl_49073	none	Trinity_GG_4683_c0_g1_i1,blat.proc3825152.chain_671	2	STRG.8300.2,blat.proc3825152.chain_672	2
scaffold_15	spliced_intron	13759939	13760410	-	asmbl_14664	none	STRG.18808.4,blat.proc3825156.chain_3663	2	STRG.18808.2,Trinity_GG_10569_c0_g1_i2,blat.proc3825156.chain_3661	3
scaffold_3	spliced_intron	1767415	1767435	+	asmbl_39883	none	STRG.2994.1	1	Trinity_GG_19006_c0_g1_i3,blat.proc3825164.chain_3228	2
scaffold_5	retained_exon	11639338	11639396	+	asmbl_45753	none	STRG.6424.2,Trinity_GG_20751_c0_g1_i3,blat.proc3825166.chain_2519	3	STRG.6424.1,Trinity_GG_20751_c0_g1_i1,blat.proc3825166.chain_2518	3
scaffold_11	alt_acceptor	2455358	2455359	-	asmbl_6501	none	STRG.13398.2	1	STRG.13398.1,blat.proc3825154.chain_1877	2
scaffold_10	retained_intron	3159617	3159862	+	asmbl_3031,asmbl_3033	none	STRG.12147.2,blat.proc3825170.chain_879	2	STRG.12147.1,blat.proc3825170.chain_878,blat.proc3825170.chain_880	3
scaffold_13	alternate_exon	7718019	7718221	-	asmbl_9906	none	blat.proc3825156.chain_891	1	STRG.16058.1,blat.proc3825156.chain_890	2
scaffold_24	spliced_intron	4294010	4294192	+	asmbl_32180	none	STRG.26591.1,blat.proc3825176.chain_3539	2	blat.proc3825176.chain_3538	1
scaffold_27	alt_donor	9099698	9099699	+	asmbl_36505	none	blat.proc3825178.chain_2363	1	blat.proc3825178.chain_2365	1
scaffold_20	retained_exon	12114358	12114429	+	asmbl_27113,asmbl_27114,asmbl_27115	none	STRG.23711.1,Trinity_GG_30409_c0_g1_i1,Trinity_GG_30409_c0_g1_i3,blat.proc3825176.chain_858,blat.proc3825176.chain_859,blat.proc3825176.chain_860	6	STRG.23711.2,blat.proc3825176.chain_857	2
scaffold_20	alternate_exon	1006731	1006774	+	asmbl_26401	none	STRG.22805.2	1	STRG.22805.3	1
scaffold_21	retained_exon	256485	256535	-	asmbl_27285,asmbl_27294,asmbl_27297	none	STRG.23725.3,blat.proc3825160.chain_802,blat.proc3825160.chain_803	3	STRG.23725.5,blat.proc3825160.chain_811,blat.proc3825160.chain_812	3
scaffold_18	alt_acceptor	13111882	13111883	+	asmbl_20992,asmbl_20993	none	STRG.21750.1,STRG.21750.2,blat.proc3825174.chain_2742,blat.proc3825174.chain_2743	4	STRG.21750.3	1
scaffold_1	starts_in_intron	14280956	14280956	+	asmbl_2371	none	Trinity_GG_17933_c0_g1_i2,blat.proc3825164.chain_1206	2	STRG.1025.1,STRG.1025.2,Trinity_GG_17933_c0_g1_i1,blat.proc3825164.chain_1205	4
scaffold_5	alt_donor	10804344	10804345	+	asmbl_45693	none	STRG.6357.2,blat.proc3825166.chain_2568	2	STRG.6357.1,blat.proc3825166.chain_2570	2
scaffold_7	alt_acceptor	7684317	7684318	-	asmbl_50967	none	STRG.9022.2,blat.proc3825152.chain_1437	2	STRG.9022.1,blat.proc3825152.chain_1438	2
scaffold_1	starts_in_intron	4917995	4917995	-	asmbl_223	none	blat.proc3825148.chain_263	1	STRG.302.1	1
scaffold_6	spliced_intron	187756	187786	+	asmbl_46637	none	STRG.7087.2	1	STRG.7087.1	1
scaffold_1	ends_in_intron	12977842	12977842	+	asmbl_2291	none	blat.proc3825164.chain_1045	1	STRG.935.1,blat.proc3825164.chain_1042,blat.proc3825164.chain_1044,blat.proc3825164.chain_1047	4
scaffold_2	starts_in_intron	16471984	16471984	-	asmbl_23696	none	blat.proc3825148.chain_2545	1	STRG.2586.1,blat.proc3825148.chain_2541,blat.proc3825148.chain_2542,blat.proc3825148.chain_2543	4
scaffold_5	alt_donor	18220740	18220741	+	asmbl_46218,asmbl_46219,asmbl_46220	none	STRG.6959.1,STRG.6959.2,STRG.6959.3,blat.proc3825166.chain_3166,blat.proc3825166.chain_3167	5	STRG.6959.4,STRG.6959.5	2
scaffold_10	alt_donor	190579	190580	-	asmbl_3916	none	STRG.11907.1,blat.proc3825154.chain_420	2	STRG.11907.2,blat.proc3825154.chain_419	2
scaffold_11	alt_acceptor	3767492	3767493	-	asmbl_6574,asmbl_6575,asmbl_6576	none	STRG.13508.1,STRG.13508.3,STRG.13508.4,blat.proc3825154.chain_2084,blat.proc3825154.chain_2087	5	STRG.13508.2	1
scaffold_19	retained_exon	12337822	12337857	+	asmbl_21788,asmbl_21790	none	STRG.22564.1,blat.proc3825174.chain_3511,blat.proc3825174.chain_3513	3	STRG.22564.2,blat.proc3825174.chain_3510,blat.proc3825174.chain_3512	3
scaffold_12	ends_in_intron	9687108	9687108	-	asmbl_8690,asmbl_8691,asmbl_8694	none	STRG.14946.3,STRG.14946.4,Trinity_GG_8342_c0_g1_i2,blat.proc3825154.chain_3466,blat.proc3825154.chain_3467	5	STRG.14946.1,STRG.14946.2,Trinity_GG_8342_c0_g1_i3,blat.proc3825154.chain_3465	4
scaffold_7	alt_donor	9788565	9788566	-	asmbl_51070	none	STRG.9171.2	1	STRG.9171.1	1
scaffold_17	spliced_intron	11034956	11035084	-	asmbl_18260,asmbl_18265,asmbl_18266,asmbl_18267	none	STRG.20664.1,STRG.20664.2,STRG.20664.3,STRG.20664.4,blat.proc3825158.chain_1639	5	blat.proc3825158.chain_1638	1
scaffold_15	alt_acceptor	12422731	12422732	+	asmbl_15564	none	STRG.18696.2	1	blat.proc3825172.chain_3324	1
scaffold_18	retained_exon	3916302	3916635	-	asmbl_19784	none	STRG.21203.2	1	STRG.21203.4	1
scaffold_2	retained_intron	7134503	7134669	+	asmbl_24531	none	STRG.2046.2,blat.proc3825164.chain_2239	2	STRG.2046.3,blat.proc3825164.chain_2241	2
scaffold_9	retained_exon	16565760	16565837	-	asmbl_55580,asmbl_55581,asmbl_55582,asmbl_55583,asmbl_55588	none	STRG.11806.3,STRG.11806.4,STRG.11806.5,STRG.11806.6,Trinity_GG_6524_c0_g1_i10,Trinity_GG_6524_c0_g1_i4,blat.proc3825154.chain_268,blat.proc3825154.chain_269	8	Trinity_GG_6524_c0_g1_i13,blat.proc3825154.chain_265	2
scaffold_25	alternate_exon	8698556	8700065	-	asmbl_34460	none	STRG.27695.4,Trinity_GG_15507_c1_g1_i1,blat.proc3825162.chain_1025,blat.proc3825162.chain_1027	4	STRG.27695.3,STRG.27695.5,blat.proc3825162.chain_1023	3
scaffold_21	alt_acceptor	8123095	8123096	+	asmbl_28789	none	STRG.24347.2	1	STRG.24347.1,blat.proc3825176.chain_1541	2
scaffold_6	alt_acceptor	878681	878682	+	asmbl_46682	none	STRG.7158.1	1	STRG.7158.3	1
scaffold_28	alt_donor	2465312	2465313	+	asmbl_37371,asmbl_37373	none	STRG.29424.1,blat.proc3825178.chain_2603,blat.proc3825178.chain_2604	3	STRG.29424.2	1
scaffold_8	alt_acceptor	7514970	7514971	-	asmbl_51919	none	STRG.10083.2	1	STRG.10083.1,blat.proc3825152.chain_2282	2
scaffold_13	alternate_exon	8806348	8807519	-	asmbl_9986	none	blat.proc3825156.chain_1072	1	STRG.16153.4,Trinity_GG_9086_c0_g1_i7,blat.proc3825156.chain_1069	3
scaffold_12	starts_in_intron	4790595	4790595	+	asmbl_7621	none	Trinity_GG_25406_c0_g1_i2,blat.proc3825170.chain_3206	2	Trinity_GG_25406_c0_g1_i1,blat.proc3825170.chain_3205	2
scaffold_26	spliced_intron	9781848	9782129	+	asmbl_35268	none	STRG.28520.1,Trinity_GG_33037_c0_g1_i2,blat.proc3825178.chain_1533	3	Trinity_GG_33037_c0_g1_i1,blat.proc3825178.chain_1532	2
scaffold_17	alternate_exon	11038544	11039046	-	asmbl_18263	none	STRG.20664.6	1	STRG.20664.5,STRG.20664.7,Trinity_GG_11602_c1_g1_i1,blat.proc3825158.chain_1650,blat.proc3825158.chain_1653,blat.proc3825158.chain_1655	6
scaffold_23	alt_acceptor	6290835	6290836	-	asmbl_30972,asmbl_30974	none	STRG.25975.3,Trinity_GG_14564_c0_g1_i5,blat.proc3825160.chain_3193	3	STRG.25975.1,Trinity_GG_14564_c0_g1_i4,Trinity_GG_14564_c0_g1_i6,blat.proc3825160.chain_3188,blat.proc3825160.chain_3191,blat.proc3825160.chain_3192	6
scaffold_12	starts_in_intron	2336747	2336747	-	asmbl_8323	none	blat.proc3825154.chain_2993	1	STRG.14498.1,blat.proc3825154.chain_2992	2
scaffold_19	spliced_intron	1504648	1504857	+	asmbl_21245	none	STRG.21912.3,blat.proc3825174.chain_2939	2	STRG.21912.1,STRG.21912.2,STRG.21912.4,STRG.21912.5,Trinity_GG_29420_c0_g2_i1,blat.proc3825174.chain_2938,blat.proc3825174.chain_2941	7
scaffold_10	alt_acceptor	5684917	5684918	+	asmbl_3191,asmbl_3192	none	STRG.12396.1,STRG.12396.2,blat.proc3825170.chain_1001	3	STRG.12396.3	1
scaffold_23	alternate_exon	7900332	7900661	-	asmbl_31055	none	STRG.26097.3	1	STRG.26097.1,blat.proc3825160.chain_3223	2
scaffold_16	alt_donor	4911936	4911937	-	asmbl_17080	none	STRG.19268.1,Trinity_GG_10809_c0_g1_i3,blat.proc3825158.chain_384	3	STRG.19268.2	1
scaffold_4	alt_donor	18456239	18456240	-	asmbl_43367	none	STRG.5447.2,blat.proc3825150.chain_1608	2	STRG.5447.1,blat.proc3825150.chain_1609	2
scaffold_6	starts_in_intron	13168507	13168507	-	asmbl_48888,asmbl_48890	none	blat.proc3825152.chain_471,blat.proc3825152.chain_478	2	STRG.8074.1,STRG.8074.2,blat.proc3825152.chain_470,blat.proc3825152.chain_472,blat.proc3825152.chain_476,blat.proc3825152.chain_477	6
scaffold_18	alternate_exon	1396052	1396093	-	asmbl_19621	none	blat.proc3825158.chain_2003	1	STRG.21025.1,STRG.21025.2,STRG.21025.3,STRG.21025.4,blat.proc3825158.chain_2005,blat.proc3825158.chain_2006	6
scaffold_14	alternate_exon	2888529	2890221	-	asmbl_12979,asmbl_12980,asmbl_12984	none	STRG.16887.1,STRG.16887.3,blat.proc3825156.chain_1636,blat.proc3825156.chain_1637	4	STRG.16887.2,STRG.16887.4,blat.proc3825156.chain_1633,blat.proc3825156.chain_1635	4
scaffold_2	spliced_intron	8787993	8788059	-	asmbl_23335	none	STRG.2129.2,blat.proc3825148.chain_2143	2	STRG.2129.1,Trinity_GG_1179_c0_g1_i3,blat.proc3825148.chain_2144,blat.proc3825148.chain_2145	4
scaffold_11	ends_in_intron	15660044	15660044	-	asmbl_7201	none	Trinity_GG_8008_c0_g1_i5,blat.proc3825154.chain_2864	2	STRG.14308.1,STRG.14308.2,blat.proc3825154.chain_2859,blat.proc3825154.chain_2860,blat.proc3825154.chain_2861,blat.proc3825154.chain_2865,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867	8
scaffold_23	ends_in_intron	809222	809222	-	asmbl_30606	none	Trinity_GG_14309_c0_g1_i3,blat.proc3825160.chain_2748	2	STRG.25583.2	1
scaffold_18	skipped_exon	204474	205653	+	asmbl_20273,asmbl_20276,asmbl_20277	none	STRG.20974.1,STRG.20974.3,blat.proc3825174.chain_1917,blat.proc3825174.chain_1920	4	STRG.20974.2,blat.proc3825174.chain_1918,blat.proc3825174.chain_1921	3
scaffold_24	spliced_intron	7167433	7167861	+	asmbl_32375	none	STRG.26766.2	1	STRG.26766.1,Trinity_GG_32118_c0_g1_i2,Trinity_GG_32118_c0_g1_i4,blat.proc3825176.chain_3741,blat.proc3825176.chain_3742,blat.proc3825176.chain_3743,blat.proc3825176.chain_3744	7
scaffold_9	ends_in_intron	3666107	3666107	+	asmbl_53911	none	Trinity_GG_23413_c0_g1_i2	1	STRG.10971.4,blat.proc3825168.chain_3493	2
scaffold_3	spliced_intron	14186470	14186940	-	asmbl_39330,asmbl_39331,asmbl_39332,asmbl_39333,asmbl_39334,asmbl_39335	none	STRG.3761.1,STRG.3761.2,STRG.3761.4,STRG.3761.5,blat.proc3825148.chain_3664,blat.proc3825148.chain_3666,blat.proc3825148.chain_3668	7	STRG.3761.3,Trinity_GG_2073_c0_g1_i5,blat.proc3825148.chain_3667	3
scaffold_17	alternate_exon	8336947	8340232	+	asmbl_18983	none	STRG.20454.1	1	STRG.20454.2	1
scaffold_15	starts_in_intron	15403617	15403617	-	asmbl_14773	none	blat.proc3825156.chain_3735	1	STRG.18929.1,Trinity_GG_10600_c0_g1_i1,blat.proc3825156.chain_3734	3
scaffold_5	alt_donor	3914526	3914527	+	asmbl_45253	none	STRG.5862.1,blat.proc3825166.chain_2094	2	STRG.5862.2	1
scaffold_4	retained_intron	6303061	6303375	+	asmbl_41392	none	Trinity_GG_19783_c1_g1_i1,blat.proc3825166.chain_924	2	STRG.4503.1,STRG.4503.2,Trinity_GG_19783_c0_g1_i1,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_919,blat.proc3825166.chain_920,blat.proc3825166.chain_921,blat.proc3825166.chain_922	10
scaffold_27	alt_acceptor	2841516	2841517	+	asmbl_36135	none	blat.proc3825178.chain_1921	1	STRG.28769.1,blat.proc3825178.chain_1919	2
scaffold_7	starts_in_intron	7666702	7666702	-	asmbl_50966	none	blat.proc3825152.chain_1399	1	STRG.9018.1,blat.proc3825152.chain_1400,blat.proc3825152.chain_1401	3
scaffold_6	alt_donor	11112920	11112921	-	asmbl_48742	none	STRG.7925.1	1	STRG.7925.2	1
scaffold_27	ends_in_intron	6077216	6077216	+	asmbl_36376	none	blat.proc3825178.chain_2220	1	STRG.29010.1,STRG.29010.2,Trinity_GG_33370_c1_g1_i4,blat.proc3825178.chain_2221,blat.proc3825178.chain_2222	5
scaffold_15	starts_in_intron	4563724	4563724	-	asmbl_14151	none	STRG.18184.1	1	STRG.18184.2	1
scaffold_7	starts_in_intron	14932223	14932223	-	asmbl_51347	none	Trinity_GG_5343_c1_g1_i1,blat.proc3825152.chain_1873	2	STRG.9513.1,Trinity_GG_5343_c1_g1_i2,blat.proc3825152.chain_1872	3
scaffold_10	retained_exon	2658975	2658996	-	asmbl_4113	none	STRG.12078.2	1	STRG.12078.1,Trinity_GG_6726_c0_g1_i2,blat.proc3825154.chain_632	3
scaffold_24	starts_in_intron	9118385	9118385	+	asmbl_32515	none	blat.proc3825178.chain_176	1	STRG.26942.1,blat.proc3825178.chain_172,blat.proc3825178.chain_173,blat.proc3825178.chain_175,blat.proc3825178.chain_177,blat.proc3825178.chain_178,blat.proc3825178.chain_179,blat.proc3825178.chain_180	8
scaffold_11	starts_in_intron	15833425	15833425	+	asmbl_6136	none	blat.proc3825170.chain_2797	1	STRG.14321.1,blat.proc3825170.chain_2800	2
scaffold_25	alt_acceptor	430341	430342	-	asmbl_33983	none	STRG.27084.2,blat.proc3825162.chain_467	2	STRG.27084.1	1
scaffold_9	skipped_exon	7793887	7795348	+	asmbl_54133,asmbl_54139	none	STRG.11230.1,blat.proc3825170.chain_71	2	blat.proc3825170.chain_70,blat.proc3825170.chain_72,blat.proc3825170.chain_74,blat.proc3825170.chain_75,blat.proc3825170.chain_77	5
scaffold_2	alt_donor	5200623	5200624	+	asmbl_24401	none	STRG.1940.2	1	STRG.1940.1,Trinity_GG_18384_c0_g1_i3,blat.proc3825164.chain_2048	3
scaffold_52	retained_exon	1667	1700	-	asmbl_46521,asmbl_46522	none	STRG.30060.1,STRG.30060.2,blat.proc3825162.chain_3235,blat.proc3825162.chain_3236	4	STRG.30060.3	1
scaffold_18	retained_intron	6425016	6425279	+	asmbl_20676	none	Trinity_GG_29106_c0_g1_i4,blat.proc3825174.chain_2385	2	STRG.21370.1,STRG.21370.2,blat.proc3825174.chain_2383,blat.proc3825174.chain_2384,blat.proc3825174.chain_2386	5
scaffold_7	alt_donor	7790042	7790043	-	asmbl_50974,asmbl_50977	none	STRG.9034.1,Trinity_GG_5091_c0_g1_i4,Trinity_GG_5091_c0_g1_i5,blat.proc3825152.chain_1414,blat.proc3825152.chain_1417	5	STRG.9034.2,Trinity_GG_5091_c0_g1_i2,Trinity_GG_5091_c0_g1_i7,blat.proc3825152.chain_1415,blat.proc3825152.chain_1418	5
scaffold_28	spliced_intron	5022371	5022502	+	asmbl_37563	none	STRG.29654.2	1	STRG.29654.1,STRG.29654.3	2
scaffold_13	alternate_exon	11585610	11585753	+	asmbl_11286	none	STRG.16316.5	1	STRG.16316.6,blat.proc3825172.chain_1031	2
scaffold_3	alt_acceptor	6656884	6656885	+	asmbl_40103,asmbl_40104,asmbl_40105,asmbl_40106,asmbl_40107,asmbl_40108,asmbl_40110,asmbl_40111,asmbl_40114,asmbl_40115,asmbl_40116	none	STRG.3295.1,STRG.3295.2,STRG.3295.4,Trinity_GG_19180_c0_g1_i15,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3560,blat.proc3825164.chain_3561,blat.proc3825164.chain_3562,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3568,blat.proc3825164.chain_3569,blat.proc3825164.chain_3571	16	STRG.3295.3,blat.proc3825164.chain_3564	2
scaffold_28	ends_in_intron	2810076	2810076	-	asmbl_38094	none	Trinity_GG_16494_c3_g1_i1	1	STRG.29471.1,STRG.29471.2,STRG.29471.3,STRG.29471.4,blat.proc3825162.chain_2598,blat.proc3825162.chain_2599,blat.proc3825162.chain_2600,blat.proc3825162.chain_2601	8
scaffold_14	alternate_exon	1613603	1613738	+	asmbl_11833	none	Trinity_GG_26566_c0_g2_i3,blat.proc3825172.chain_1590	2	STRG.16804.1,STRG.16804.2,STRG.16804.3,Trinity_GG_26566_c0_g2_i2,blat.proc3825172.chain_1587,blat.proc3825172.chain_1588	6
scaffold_3	retained_exon	13833620	13833814	+	asmbl_40463	none	Trinity_GG_19394_c0_g1_i4,blat.proc3825166.chain_206	2	Trinity_GG_19394_c0_g1_i6,blat.proc3825166.chain_209	2
scaffold_23	retained_intron	7388982	7389133	+	asmbl_31690	none	STRG.26057.1,blat.proc3825176.chain_2885	2	STRG.26057.2	1
scaffold_21	starts_in_intron	6925013	6925013	-	asmbl_27754	none	blat.proc3825160.chain_1341	1	STRG.24221.1	1
scaffold_18	retained_exon	7686709	7686791	+	asmbl_20783,asmbl_20785	none	STRG.21474.2,blat.proc3825174.chain_2519	2	STRG.21474.1,STRG.21474.4,Trinity_GG_29179_c0_g1_i11,Trinity_GG_29179_c0_g1_i7,blat.proc3825174.chain_2510,blat.proc3825174.chain_2514,blat.proc3825174.chain_2515	7
scaffold_9	retained_exon	6149058	6149127	+	asmbl_54077	none	STRG.11159.2	1	STRG.11159.1	1
scaffold_12	alternate_exon	3803786	3804075	+	asmbl_7573	none	STRG.14588.3,blat.proc3825170.chain_3154	2	STRG.14588.1,blat.proc3825170.chain_3153	2
scaffold_11	alt_donor	9018553	9018554	-	asmbl_6902,asmbl_6904,asmbl_6905,asmbl_6906	none	STRG.13940.1,STRG.13940.2,blat.proc3825154.chain_2405,blat.proc3825154.chain_2407,blat.proc3825154.chain_2408	5	blat.proc3825154.chain_2410	1
scaffold_23	skipped_exon	7683923	7685948	+	asmbl_31719	none	STRG.26090.4	1	STRG.26090.2,STRG.26090.3,Trinity_GG_31727_c0_g1_i2,Trinity_GG_31727_c0_g1_i5,blat.proc3825176.chain_3052,blat.proc3825176.chain_3053	6
scaffold_1	retained_intron	7370029	7370112	-	asmbl_431,asmbl_432	none	STRG.528.1,STRG.528.3,Trinity_GG_284_c0_g1_i1,blat.proc3825148.chain_515	4	STRG.528.2,STRG.528.4,STRG.528.5	3
scaffold_6	retained_intron	8175225	8175459	-	asmbl_48537,asmbl_48538,asmbl_48540,asmbl_48545	none	STRG.7706.1,Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_95	6	blat.proc3825152.chain_91,blat.proc3825152.chain_92	2
scaffold_5	alt_acceptor	7029551	7029552	+	asmbl_45474,asmbl_45477	none	STRG.6116.2,STRG.6116.3	2	STRG.6116.1,STRG.6116.4,blat.proc3825166.chain_2374	3
scaffold_22	starts_in_intron	508746	508746	-	asmbl_29101	none	Trinity_GG_13790_c0_g1_i8,blat.proc3825160.chain_1863	2	STRG.24702.1,STRG.24702.5,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i15,Trinity_GG_13790_c0_g1_i5,Trinity_GG_13790_c0_g1_i9,blat.proc3825160.chain_1860,blat.proc3825160.chain_1861,blat.proc3825160.chain_1865,blat.proc3825160.chain_1866,blat.proc3825160.chain_1869	12
scaffold_12	alt_acceptor	12801742	12801743	+	asmbl_8020,asmbl_8023	none	STRG.15177.2,blat.proc3825170.chain_3621	2	STRG.15177.1,blat.proc3825170.chain_3619	2
scaffold_15	alt_acceptor	4566555	4566556	+	asmbl_15159	none	STRG.18186.2,Trinity_GG_27289_c0_g1_i2,blat.proc3825172.chain_2865	3	Trinity_GG_27289_c0_g1_i4,blat.proc3825172.chain_2866	2
scaffold_24	starts_in_intron	716087	716087	+	asmbl_32038,asmbl_32040	none	STRG.26350.2,Trinity_GG_31885_c0_g1_i4,blat.proc3825176.chain_3339	3	STRG.26350.1,blat.proc3825176.chain_3338,blat.proc3825176.chain_3340	3
scaffold_12	spliced_intron	14289988	14290450	-	asmbl_9006,asmbl_9008	none	STRG.15271.3,blat.proc3825156.chain_66,blat.proc3825156.chain_67	3	STRG.15271.1,Trinity_GG_8552_c0_g1_i1,blat.proc3825156.chain_64,blat.proc3825156.chain_65	4
scaffold_2	alt_acceptor	3884011	3884012	-	asmbl_23011	none	STRG.1821.2,blat.proc3825148.chain_1756	2	STRG.1821.1,blat.proc3825148.chain_1757	2
scaffold_7	alternate_exon	7026355	7026458	+	asmbl_49891	none	STRG.8964.2,blat.proc3825168.chain_1451	2	STRG.8964.1,blat.proc3825168.chain_1450	2
scaffold_13	alt_acceptor	10239635	10239636	-	asmbl_10056	none	STRG.16258.4	1	STRG.16258.1,STRG.16258.3,blat.proc3825156.chain_1115,blat.proc3825156.chain_1116	4
scaffold_6	alternate_exon	2863074	2863161	+	asmbl_46775	none	STRG.7284.1	1	STRG.7284.2	1
scaffold_15	spliced_intron	15917540	15917607	+	asmbl_15841,asmbl_15846	none	STRG.18976.1,STRG.18976.2,Trinity_GG_27681_c1_g1_i1,blat.proc3825172.chain_3552	4	STRG.18976.3,Trinity_GG_27681_c1_g1_i2,blat.proc3825172.chain_3551	3
scaffold_17	alternate_exon	8621168	8621310	+	asmbl_19005	none	STRG.20473.5,blat.proc3825174.chain_1334	2	STRG.20473.4,blat.proc3825174.chain_1335,blat.proc3825174.chain_1339	3
scaffold_1	alt_acceptor	12864063	12864064	+	asmbl_2262	none	STRG.914.2	1	STRG.914.1,blat.proc3825164.chain_1051	2
scaffold_3	starts_in_intron	8308038	8308038	-	asmbl_39030	none	Trinity_GG_1820_c0_g1_i1	1	STRG.3404.1	1
scaffold_7	alt_acceptor	11184952	11184953	+	asmbl_50159	none	STRG.9263.2,blat.proc3825168.chain_1769	2	STRG.9263.1,blat.proc3825168.chain_1770	2
scaffold_25	retained_intron	6325008	6325126	-	asmbl_34361	none	blat.proc3825162.chain_939	1	STRG.27519.1,STRG.27519.2,blat.proc3825162.chain_938,blat.proc3825162.chain_940,blat.proc3825162.chain_941,blat.proc3825162.chain_942,blat.proc3825162.chain_943	7
scaffold_8	spliced_intron	6019135	6019279	+	asmbl_52921	none	STRG.10013.4,blat.proc3825168.chain_2619	2	Trinity_GG_22906_c2_g1_i2,Trinity_GG_22906_c2_g1_i3,blat.proc3825168.chain_2620,blat.proc3825168.chain_2621	4
scaffold_1	retained_exon	12466933	12467942	-	asmbl_722	none	STRG.867.3	1	STRG.867.1,STRG.867.2,STRG.867.5	3
scaffold_10	alternate_exon	12697505	12697638	-	asmbl_4817	none	STRG.12858.1,blat.proc3825154.chain_1452	2	STRG.12858.2,blat.proc3825154.chain_1453	2
scaffold_20	alternate_exon	425595	428414	+	asmbl_26351	none	STRG.22745.1	1	STRG.22745.4,blat.proc3825162.chain_3213	2
scaffold_28	spliced_intron	9225948	9225986	-	asmbl_38500	none	STRG.29966.3	1	STRG.29966.1,Trinity_GG_16810_c0_g1_i1,Trinity_GG_16810_c0_g1_i2,blat.proc3825162.chain_3141,blat.proc3825162.chain_3142	5
scaffold_23	ends_in_intron	6988510	6988510	-	asmbl_30999	none	blat.proc3825160.chain_3168	1	STRG.26022.1,STRG.26022.2,STRG.26022.3,blat.proc3825160.chain_3166,blat.proc3825160.chain_3167	5
scaffold_7	alternate_exon	3965012	3965160	+	asmbl_49706	none	STRG.8798.1,blat.proc3825168.chain_1264	2	STRG.8798.2,blat.proc3825168.chain_1263	2
scaffold_2	ends_in_intron	6436262	6436262	+	asmbl_24465	none	Trinity_GG_18441_c0_g1_i1,blat.proc3825164.chain_2130	2	STRG.2008.1,Trinity_GG_18441_c0_g1_i3,blat.proc3825164.chain_2131	3
scaffold_5	starts_in_intron	9545182	9545182	-	asmbl_44287	none	blat.proc3825150.chain_2485	1	STRG.6271.1,blat.proc3825150.chain_2484	2
scaffold_14	retained_intron	15468065	15468154	+	asmbl_12599	none	STRG.17780.1	1	STRG.17780.4	1
scaffold_10	alt_donor	15426722	15426723	+	asmbl_3687	none	STRG.13064.1	1	STRG.13064.2	1
scaffold_14	ends_in_intron	11331318	11331318	-	asmbl_13473	none	Trinity_GG_9802_c1_g1_i1	1	STRG.17464.1,blat.proc3825156.chain_2289	2
scaffold_3	alternate_exon	7642145	7642179	-	asmbl_38975	none	STRG.3356.2	1	STRG.3356.1,blat.proc3825148.chain_3232	2
scaffold_10	retained_intron	11970420	11970501	+	asmbl_3510,asmbl_3515	none	STRG.12838.3,STRG.12838.6	2	STRG.12838.1,STRG.12838.2	2
scaffold_18	alt_donor	12935403	12935404	+	asmbl_20983	none	blat.proc3825158.chain_2618	1	STRG.21740.2	1
scaffold_18	spliced_intron	13649190	13649215	+	asmbl_21030	none	blat.proc3825174.chain_2823	1	STRG.21798.2	1
scaffold_23	retained_intron	4449748	4450584	-	asmbl_30868,asmbl_30869	none	STRG.25862.2,Trinity_GG_14447_c0_g1_i4,blat.proc3825160.chain_3003	3	STRG.25862.3,Trinity_GG_14447_c0_g1_i1,blat.proc3825160.chain_3002	3
scaffold_20	spliced_intron	5845709	5845968	-	asmbl_25779	none	STRG.23185.1,blat.proc3825160.chain_256	2	STRG.23185.2,Trinity_GG_12929_c0_g1_i1,blat.proc3825160.chain_257,blat.proc3825160.chain_258	4
scaffold_13	alternate_exon	9994183	9999578	-	asmbl_10047,asmbl_10048	none	STRG.16241.1,STRG.16241.2,blat.proc3825156.chain_1094,blat.proc3825156.chain_1095	4	STRG.16241.3,blat.proc3825156.chain_1093	2
scaffold_13	ends_in_intron	6048409	6048409	-	asmbl_9769	none	blat.proc3825156.chain_783	1	STRG.15915.1,STRG.15915.5,blat.proc3825156.chain_778,blat.proc3825156.chain_782	4
scaffold_13	ends_in_intron	8810329	8810329	-	asmbl_9981	none	STRG.16153.5,blat.proc3825156.chain_1068	2	Trinity_GG_9086_c0_g1_i5,blat.proc3825156.chain_1065,blat.proc3825156.chain_1070,blat.proc3825156.chain_1073	4
scaffold_14	starts_in_intron	1611972	1611972	+	asmbl_11829	none	STRG.16804.4,Trinity_GG_26566_c0_g1_i1,blat.proc3825172.chain_1586	3	STRG.16804.1,STRG.16804.2,STRG.16804.3,Trinity_GG_26566_c0_g2_i2,Trinity_GG_26566_c0_g2_i3,blat.proc3825172.chain_1587,blat.proc3825172.chain_1588,blat.proc3825172.chain_1590	8
scaffold_19	starts_in_intron	10222252	10222252	+	asmbl_21631,asmbl_21632	none	STRG.22402.3,blat.proc3825174.chain_3298	2	STRG.22402.2,blat.proc3825174.chain_3297	2
scaffold_18	alt_acceptor	8726192	8726193	+	asmbl_20859,asmbl_20863	none	STRG.21537.1,blat.proc3825174.chain_2616,blat.proc3825174.chain_2619	3	STRG.21537.3,blat.proc3825174.chain_2618,blat.proc3825174.chain_2620	3
scaffold_4	retained_intron	5651119	5651379	-	asmbl_42618,asmbl_42623,asmbl_42624,asmbl_42628	none	STRG.4472.2,blat.proc3825150.chain_658,blat.proc3825150.chain_663,blat.proc3825150.chain_664,blat.proc3825150.chain_668	5	STRG.4472.1,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_666,blat.proc3825150.chain_667	6
scaffold_5	retained_exon	134802	134958	+	asmbl_45071	none	STRG.5577.2	1	STRG.5577.1	1
scaffold_8	retained_intron	4186377	4186485	+	asmbl_52819,asmbl_52820	none	blat.proc3825168.chain_2472,blat.proc3825168.chain_2473	2	STRG.9897.1,blat.proc3825168.chain_2471	2
scaffold_16	retained_intron	10441689	10441843	+	asmbl_16531	none	Trinity_GG_28034_c0_g1_i3,blat.proc3825174.chain_499	2	STRG.19615.1,Trinity_GG_28034_c0_g1_i1,Trinity_GG_28034_c0_g1_i2,blat.proc3825174.chain_498	4
scaffold_2	alternate_exon	13399012	13399886	+	asmbl_24842,asmbl_24844	none	STRG.2359.3,Trinity_GG_18642_c0_g1_i5,blat.proc3825164.chain_2559,blat.proc3825164.chain_2561	4	STRG.2359.2,blat.proc3825164.chain_2560,blat.proc3825164.chain_2563	3
scaffold_14	spliced_intron	6281800	6282048	+	asmbl_12056	none	STRG.17079.3,blat.proc3825172.chain_1849	2	STRG.17079.1,STRG.17079.2,STRG.17079.4,blat.proc3825172.chain_1848,blat.proc3825172.chain_1853	5
scaffold_6	retained_exon	16621164	16621258	-	asmbl_49150	none	STRG.8392.1,blat.proc3825152.chain_835	2	STRG.8392.3,blat.proc3825152.chain_834	2
scaffold_12	retained_intron	3352547	3352645	+	asmbl_7553	none	Trinity_GG_25354_c0_g1_i2	1	STRG.14559.1	1
scaffold_1	starts_in_intron	4587703	4587703	+	asmbl_1675	none	Trinity_GG_17458_c0_g1_i1,blat.proc3825164.chain_316	2	STRG.283.1,blat.proc3825164.chain_317,blat.proc3825164.chain_318	3
scaffold_10	alt_acceptor	11604700	11604701	+	asmbl_3474,asmbl_3475,asmbl_3476,asmbl_3478,asmbl_3485,asmbl_3486	none	STRG.12815.1,STRG.12815.2,STRG.12815.4,STRG.12815.5,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1428,blat.proc3825170.chain_1429	8	STRG.12815.3,blat.proc3825170.chain_1423,blat.proc3825170.chain_1425	3
scaffold_25	alt_acceptor	5828116	5828117	-	asmbl_34297	none	blat.proc3825162.chain_881	1	blat.proc3825162.chain_879,blat.proc3825162.chain_880	2
scaffold_1	starts_in_intron	20346338	20346338	+	asmbl_2623	none	blat.proc3825164.chain_1584	1	STRG.1396.1,STRG.1396.2,STRG.1396.3,STRG.1396.5,Trinity_GG_18153_c0_g1_i4,blat.proc3825164.chain_1586	6
scaffold_19	ends_in_intron	12355502	12355502	+	asmbl_21793	none	Trinity_GG_29794_c0_g1_i2,blat.proc3825174.chain_3589	2	STRG.22567.1,STRG.22567.2,Trinity_GG_29794_c0_g1_i1,blat.proc3825174.chain_3590	4
scaffold_1	retained_intron	16923881	16923994	-	asmbl_1022	none	STRG.1196.2	1	STRG.1196.3	1
scaffold_52	retained_intron	6286	6560	+	asmbl_46527,asmbl_46530	none	STRG.30059.2,Trinity_GG_33948_c0_g1_i1,Trinity_GG_33948_c0_g1_i2,Trinity_GG_33948_c0_g1_i3,blat.proc3825178.chain_3181,blat.proc3825178.chain_3182,blat.proc3825178.chain_3183	7	STRG.30059.1,STRG.30059.3,Trinity_GG_33948_c0_g1_i4,Trinity_GG_33948_c0_g1_i5,blat.proc3825178.chain_3179,blat.proc3825178.chain_3184	6
scaffold_15	alternate_exon	1961214	1961302	+	asmbl_15041	none	STRG.17992.1	1	STRG.17992.3	1
scaffold_2	alt_donor	14194590	14194591	-	asmbl_23568,asmbl_23569,asmbl_23570,asmbl_23571	none	STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2414,blat.proc3825148.chain_2415	4	STRG.2416.1	1
scaffold_5	alternate_exon	10890321	10896229	-	asmbl_44383	none	STRG.6367.2,blat.proc3825150.chain_2462,blat.proc3825150.chain_2465	3	blat.proc3825150.chain_2464	1
scaffold_27	spliced_intron	2792841	2792968	+	asmbl_36114,asmbl_36115,asmbl_36116	none	STRG.28760.1,blat.proc3825178.chain_1914,blat.proc3825178.chain_1916	3	STRG.28760.2	1
scaffold_13	ends_in_intron	7719760	7719760	-	asmbl_9908	none	blat.proc3825156.chain_887	1	STRG.16058.1,STRG.16058.2,Trinity_GG_8995_c0_g1_i3,blat.proc3825156.chain_885,blat.proc3825156.chain_886	5
scaffold_24	starts_in_intron	8954273	8954273	+	asmbl_32463	none	blat.proc3825178.chain_104	1	STRG.26917.1,STRG.26917.2,Trinity_GG_32185_c0_g1_i1,Trinity_GG_32185_c0_g1_i3,blat.proc3825178.chain_102,blat.proc3825178.chain_103	6
scaffold_18	ends_in_intron	8914756	8914756	-	asmbl_20043	none	Trinity_GG_12043_c0_g2_i1,blat.proc3825158.chain_2454	2	STRG.21558.1,STRG.21558.3,STRG.21558.4,STRG.21558.6,blat.proc3825158.chain_2447,blat.proc3825158.chain_2449	6
scaffold_14	spliced_intron	7298482	7298744	+	asmbl_12147	none	Trinity_GG_26761_c0_g1_i6,blat.proc3825172.chain_1943	2	STRG.17169.3,blat.proc3825172.chain_1942	2
scaffold_19	spliced_intron	7586777	7587075	-	asmbl_22246	none	STRG.22238.1	1	STRG.22238.3	1
scaffold_1	spliced_intron	8789817	8789913	+	asmbl_1940	none	STRG.585.1,blat.proc3825164.chain_738	2	blat.proc3825164.chain_739	1
scaffold_12	alternate_exon	14256647	14256758	+	asmbl_8077	none	STRG.15262.3	1	STRG.15262.1,Trinity_GG_25682_c0_g1_i2,blat.proc3825170.chain_3696	3
scaffold_2	starts_in_intron	11670853	11670853	+	asmbl_24767	none	Trinity_GG_18589_c0_g1_i1,blat.proc3825164.chain_2462	2	STRG.2276.1,blat.proc3825164.chain_2461,blat.proc3825164.chain_2463	3
scaffold_7	alt_acceptor	2149897	2149898	+	asmbl_49625	none	STRG.8661.1,Trinity_GG_22074_c0_g1_i2	2	STRG.8661.2,Trinity_GG_22074_c0_g1_i1	2
scaffold_7	spliced_intron	12540189	12540286	-	asmbl_51237,asmbl_51238,asmbl_51242,asmbl_51243,asmbl_51244	none	STRG.9363.1,STRG.9363.2,STRG.9363.3,STRG.9363.4,STRG.9363.5,blat.proc3825152.chain_1713,blat.proc3825152.chain_1714	7	blat.proc3825152.chain_1717	1
scaffold_3	starts_in_intron	12773764	12773764	+	asmbl_40414	none	STRG.3668.3,Trinity_GG_19374_c0_g1_i1,blat.proc3825166.chain_173	3	STRG.3668.1,STRG.3668.2,Trinity_GG_19374_c0_g1_i3,blat.proc3825166.chain_175	4
scaffold_25	spliced_intron	8476570	8476690	+	asmbl_33737,asmbl_33739	none	STRG.27679.1,blat.proc3825178.chain_791,blat.proc3825178.chain_792	3	blat.proc3825178.chain_789	1
scaffold_22	alternate_exon	2394597	2408346	+	asmbl_29938	none	STRG.24781.1,blat.proc3825176.chain_1868	2	blat.proc3825176.chain_1826	1
scaffold_14	alt_acceptor	15692311	15692312	-	asmbl_13741	none	blat.proc3825156.chain_2579	1	STRG.17812.1,STRG.17812.2,blat.proc3825156.chain_2578	3
scaffold_23	alt_acceptor	10938169	10938170	-	asmbl_31179	none	blat.proc3825160.chain_3413,blat.proc3825160.chain_3414	2	STRG.26299.1,STRG.26299.2,STRG.26299.3	3
scaffold_11	retained_exon	9149693	9149768	+	asmbl_5873	none	STRG.13954.2,blat.proc3825170.chain_2542	2	STRG.13954.1,blat.proc3825170.chain_2540	2
scaffold_14	starts_in_intron	3162621	3162621	+	asmbl_11907,asmbl_11908,asmbl_11920	none	STRG.16908.4,blat.proc3825172.chain_1612,blat.proc3825172.chain_1613,blat.proc3825172.chain_1614	4	STRG.16908.1,STRG.16908.3	2
scaffold_6	spliced_intron	1498115	1498676	+	asmbl_46709	none	STRG.7191.3	1	STRG.7191.1,Trinity_GG_21281_c1_g1_i1,blat.proc3825166.chain_3404	3
scaffold_21	alternate_exon	8528489	8530890	+	asmbl_28816	none	STRG.24391.1,blat.proc3825176.chain_1461,blat.proc3825176.chain_1465	3	blat.proc3825176.chain_1467	1
scaffold_9	skipped_exon	14817657	14818073	-	asmbl_55498	none	STRG.11702.1,blat.proc3825154.chain_160	2	STRG.11702.5	1
scaffold_2	alt_acceptor	9123247	9123248	+	asmbl_24666	none	STRG.2156.2	1	STRG.2156.1,Trinity_GG_18540_c0_g1_i1,Trinity_GG_18540_c0_g1_i2,blat.proc3825164.chain_2359,blat.proc3825164.chain_2360	5
scaffold_6	ends_in_intron	6954342	6954342	+	asmbl_47031,asmbl_47032	none	STRG.7605.2,blat.proc3825168.chain_50	2	STRG.7605.1,blat.proc3825168.chain_48	2
scaffold_3	retained_intron	14433082	14433258	-	asmbl_39372	none	STRG.3785.2,Trinity_GG_2047_c0_g1_i2,blat.proc3825148.chain_3609	3	STRG.3785.1,Trinity_GG_2047_c0_g1_i6,Trinity_GG_2047_c0_g1_i7,blat.proc3825148.chain_3610,blat.proc3825148.chain_3611	5
scaffold_26	starts_in_intron	6704414	6704414	-	asmbl_35697	none	blat.proc3825162.chain_1601	1	STRG.28371.1,STRG.28371.2,blat.proc3825162.chain_1602,blat.proc3825162.chain_1604	4
scaffold_11	ends_in_intron	8425627	8425627	+	asmbl_5775	none	Trinity_GG_24892_c0_g1_i1,blat.proc3825170.chain_2300	2	STRG.13861.1,STRG.13861.2,Trinity_GG_24892_c0_g1_i2,Trinity_GG_24892_c0_g1_i3,blat.proc3825170.chain_2299,blat.proc3825170.chain_2301	6
scaffold_28	retained_intron	294106	294231	+	asmbl_37268	none	STRG.29263.3,blat.proc3825178.chain_2492	2	STRG.29263.2,blat.proc3825178.chain_2488	2
scaffold_11	spliced_intron	8567155	8567273	+	asmbl_5800	none	STRG.13873.1,Trinity_GG_24965_c0_g1_i3,blat.proc3825170.chain_2435	3	Trinity_GG_24965_c0_g1_i1,Trinity_GG_24965_c0_g1_i2,blat.proc3825170.chain_2434,blat.proc3825170.chain_2436	4
scaffold_18	starts_in_intron	6344886	6344886	-	asmbl_19896	none	blat.proc3825158.chain_2301	1	STRG.21363.1,blat.proc3825158.chain_2300	2
scaffold_8	retained_intron	10059073	10059152	-	asmbl_52098	none	Trinity_GG_5681_c0_g1_i1,blat.proc3825152.chain_2446	2	STRG.10265.1,STRG.10265.2,blat.proc3825152.chain_2447,blat.proc3825152.chain_2448	4
scaffold_14	spliced_intron	15565919	15565945	+	asmbl_12623	none	STRG.17796.3	1	STRG.17796.1,STRG.17796.2	2
scaffold_4	alternate_exon	17115305	17115405	+	asmbl_42036	none	STRG.5308.4	1	STRG.5308.1,STRG.5308.3,Trinity_GG_20255_c0_g1_i1,blat.proc3825166.chain_1665,blat.proc3825166.chain_1666	5
scaffold_8	starts_in_intron	3328665	3328665	+	asmbl_52756	none	Trinity_GG_22780_c0_g2_i2,blat.proc3825168.chain_2366	2	STRG.9835.1,blat.proc3825168.chain_2365	2
scaffold_4	alternate_exon	17116847	17117376	+	asmbl_42033	none	STRG.5308.3,Trinity_GG_20255_c1_g1_i1,blat.proc3825166.chain_1665,blat.proc3825166.chain_1666,blat.proc3825166.chain_1672	5	STRG.5308.4	1
scaffold_5	alternate_exon	9072693	9072758	+	asmbl_45598	none	blat.proc3825166.chain_2463	1	STRG.6245.1,blat.proc3825166.chain_2462	2
scaffold_13	spliced_intron	4532541	4532619	+	asmbl_10809	none	STRG.15780.2,Trinity_GG_25975_c0_g1_i1,blat.proc3825172.chain_505	3	STRG.15780.1,Trinity_GG_25975_c0_g1_i2,blat.proc3825172.chain_504	3
scaffold_16	retained_intron	795167	795376	+	asmbl_16054	none	STRG.19057.2,blat.proc3825172.chain_3706	2	STRG.19057.1,blat.proc3825172.chain_3705	2
scaffold_6	ends_in_intron	11012773	11012773	-	asmbl_48730	none	Trinity_GG_4501_c0_g1_i1,blat.proc3825152.chain_320	2	STRG.7916.2,STRG.7916.3,STRG.7916.4,blat.proc3825152.chain_319	4
scaffold_5	retained_intron	12842254	12842348	+	asmbl_45824,asmbl_45827,asmbl_45829	none	STRG.6517.2,STRG.6517.4,Trinity_GG_20807_c0_g1_i2,blat.proc3825166.chain_2621	4	STRG.6517.1,STRG.6517.3,Trinity_GG_20807_c0_g1_i1,blat.proc3825166.chain_2619,blat.proc3825166.chain_2620	5
scaffold_8	retained_intron	4899967	4900064	+	asmbl_52878	none	blat.proc3825168.chain_2416	1	STRG.9956.1,STRG.9956.2,blat.proc3825168.chain_2417,blat.proc3825168.chain_2418	4
scaffold_19	alt_acceptor	5994963	5994964	-	asmbl_22187	none	STRG.22136.2,Trinity_GG_12315_c0_g1_i1,blat.proc3825158.chain_2909	3	STRG.22136.1,Trinity_GG_12315_c0_g1_i2,blat.proc3825158.chain_2910	3
scaffold_25	alternate_exon	3293326	3296436	-	asmbl_34118	none	STRG.27284.3,blat.proc3825162.chain_657	2	STRG.27284.4	1
scaffold_20	starts_in_intron	1589200	1589200	+	asmbl_26436	none	blat.proc3825176.chain_10	1	STRG.22891.1,blat.proc3825176.chain_8	2
scaffold_17	starts_in_intron	7050561	7050561	+	asmbl_18891	none	Trinity_GG_28477_c2_g1_i1,blat.proc3825174.chain_1231	2	STRG.20370.1,STRG.20370.2,STRG.20370.3,blat.proc3825174.chain_1223,blat.proc3825174.chain_1224,blat.proc3825174.chain_1225,blat.proc3825174.chain_1226,blat.proc3825174.chain_1227	8
scaffold_20	retained_intron	5553307	5553473	-	asmbl_25767,asmbl_25768,asmbl_25769	none	STRG.23182.2,Trinity_GG_12903_c0_g1_i10,blat.proc3825160.chain_211,blat.proc3825160.chain_214,blat.proc3825160.chain_215,blat.proc3825160.chain_217	6	STRG.23182.1,STRG.23182.3,STRG.23182.4,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_216	6
scaffold_9	alt_donor	9455100	9455101	-	asmbl_55173	none	STRG.11304.1,blat.proc3825152.chain_3543,blat.proc3825152.chain_3544	3	STRG.11304.2	1
scaffold_9	alt_acceptor	12480611	12480612	-	asmbl_55377	none	STRG.11563.1,blat.proc3825152.chain_3742	2	STRG.11563.2	1
scaffold_7	retained_intron	18392890	18393030	-	asmbl_51478	none	Trinity_GG_5439_c0_g1_i9,blat.proc3825152.chain_2019	2	STRG.9670.5,STRG.9670.6,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2013,blat.proc3825152.chain_2014,blat.proc3825152.chain_2015	7
scaffold_12	retained_intron	10187619	10188527	-	asmbl_8737	none	blat.proc3825154.chain_3519	1	STRG.14994.1,blat.proc3825154.chain_3514,blat.proc3825154.chain_3515,blat.proc3825154.chain_3516	4
scaffold_28	retained_exon	6547930	6548040	-	asmbl_38355,asmbl_38356	none	STRG.29753.2,STRG.29753.3	2	STRG.29753.1,STRG.29753.4	2
scaffold_25	alt_donor	9429086	9429087	+	asmbl_33815	none	STRG.27757.2	1	STRG.27757.1,Trinity_GG_32597_c0_g1_i2,blat.proc3825178.chain_798	3
scaffold_7	skipped_exon	15568072	15569453	-	asmbl_51383,asmbl_51384	none	STRG.9555.1,blat.proc3825152.chain_1851	2	blat.proc3825152.chain_1852	1
scaffold_11	retained_intron	10144217	10144522	-	asmbl_6982,asmbl_6984	none	STRG.14028.1,Trinity_GG_7815_c0_g1_i1	2	STRG.14028.2	1
scaffold_13	spliced_intron	1238377	1238503	+	asmbl_10546,asmbl_10547,asmbl_10550,asmbl_10551,asmbl_10553,asmbl_10556	none	STRG.15494.1,STRG.15494.2,STRG.15494.4,STRG.15494.5,STRG.15494.6,Trinity_GG_25867_c0_g1_i3,Trinity_GG_25867_c0_g1_i4,blat.proc3825172.chain_307,blat.proc3825172.chain_311,blat.proc3825172.chain_312	10	Trinity_GG_25867_c0_g1_i1,blat.proc3825172.chain_308	2
scaffold_6	alt_acceptor	6026392	6026393	+	asmbl_46987,asmbl_46988	none	STRG.7554.1,STRG.7554.3,blat.proc3825166.chain_3718	3	STRG.7554.2	1
scaffold_5	ends_in_intron	18704130	18704130	-	asmbl_44860	none	Trinity_GG_3902_c0_g1_i3,blat.proc3825150.chain_3115	2	STRG.6996.2	1
scaffold_6	alt_acceptor	6920857	6920858	-	asmbl_48470,asmbl_48471,asmbl_48472	none	STRG.7597.2,STRG.7597.3,blat.proc3825152.chain_5,blat.proc3825152.chain_6	4	STRG.7597.1	1
scaffold_24	retained_exon	4318839	4318880	+	asmbl_32187	none	STRG.26600.2	1	STRG.26600.3	1
scaffold_14	alternate_exon	7259122	7260570	-	asmbl_13181	none	STRG.17163.2	1	STRG.17163.1	1
scaffold_1	spliced_intron	5735334	5735977	+	asmbl_1766,asmbl_1767,asmbl_1768,asmbl_1769,asmbl_1770	none	STRG.389.1,STRG.389.2,blat.proc3825164.chain_505,blat.proc3825164.chain_506,blat.proc3825164.chain_508,blat.proc3825164.chain_509	6	blat.proc3825164.chain_510	1
scaffold_7	alt_acceptor	712066	712067	-	asmbl_50693,asmbl_50696	none	STRG.8610.1,blat.proc3825152.chain_1090,blat.proc3825152.chain_1093	3	blat.proc3825152.chain_1092	1
scaffold_12	alternate_exon	15440042	15440094	-	asmbl_9087	none	Trinity_GG_8614_c0_g1_i2,blat.proc3825156.chain_209	2	STRG.15351.1,STRG.15351.2,blat.proc3825156.chain_207,blat.proc3825156.chain_208	4
scaffold_4	alt_acceptor	7048448	7048449	+	asmbl_41452	none	STRG.4539.1,blat.proc3825166.chain_1010	2	STRG.4539.2	1
scaffold_2	starts_in_intron	6900109	6900109	+	asmbl_24508	none	Trinity_GG_18453_c0_g1_i8,blat.proc3825164.chain_2159	2	STRG.2036.1,STRG.2036.2,STRG.2036.3,STRG.2036.4,blat.proc3825164.chain_2155,blat.proc3825164.chain_2156,blat.proc3825164.chain_2158,blat.proc3825164.chain_2160	8
scaffold_20	alt_acceptor	6127903	6127904	-	asmbl_25815	none	STRG.23210.1,blat.proc3825160.chain_261	2	STRG.23210.2	1
scaffold_16	alt_donor	11396077	11396078	-	asmbl_17340,asmbl_17341,asmbl_17343	none	STRG.19673.1,STRG.19673.3,STRG.19673.4,blat.proc3825158.chain_729	4	STRG.19673.6	1
scaffold_24	retained_exon	2520807	2520854	-	asmbl_32792	none	STRG.26474.1,blat.proc3825160.chain_3606	2	blat.proc3825160.chain_3607	1
scaffold_18	retained_intron	8726455	8726561	+	asmbl_20860,asmbl_20861,asmbl_20863	none	Trinity_GG_29235_c0_g1_i3,blat.proc3825174.chain_2615,blat.proc3825174.chain_2619,blat.proc3825174.chain_2621	4	STRG.21537.1,STRG.21537.2,STRG.21537.3,blat.proc3825174.chain_2616,blat.proc3825174.chain_2617,blat.proc3825174.chain_2618,blat.proc3825174.chain_2620	7
scaffold_23	starts_in_intron	1664918	1664918	-	asmbl_30667	none	STRG.25641.1,blat.proc3825160.chain_2791	2	STRG.25641.2	1
scaffold_15	starts_in_intron	1961511	1961511	+	asmbl_15042	none	STRG.17992.3	1	STRG.17992.2	1
scaffold_1	alternate_exon	18488802	18488925	-	asmbl_1107,asmbl_1108,asmbl_1111,asmbl_1112	none	STRG.1298.2,STRG.1298.6,blat.proc3825148.chain_1319,blat.proc3825148.chain_1320,blat.proc3825148.chain_1321,blat.proc3825148.chain_1322	6	STRG.1298.8	1
scaffold_1	alternate_exon	5136272	5136945	+	asmbl_1698	none	STRG.321.2,blat.proc3825164.chain_410	2	STRG.321.1	1
scaffold_2	retained_intron	9886597	9886832	-	asmbl_23400,asmbl_23401	none	STRG.2192.1,blat.proc3825148.chain_2165,blat.proc3825148.chain_2167	3	blat.proc3825148.chain_2166	1
scaffold_1	spliced_intron	14354771	14354860	-	asmbl_902	none	blat.proc3825148.chain_1040	1	Trinity_GG_547_c0_g1_i3,blat.proc3825148.chain_1036,blat.proc3825148.chain_1037,blat.proc3825148.chain_1038,blat.proc3825148.chain_1039	5
scaffold_10	alt_donor	1073921	1073922	-	asmbl_4042	none	STRG.11991.1	1	STRG.11991.2	1
scaffold_22	alternate_exon	11595657	11595891	-	asmbl_29686	none	blat.proc3825160.chain_2633	1	STRG.25516.5,blat.proc3825160.chain_2632	2
scaffold_1	spliced_intron	10763493	10763516	-	asmbl_598	none	STRG.701.2	1	STRG.701.1,Trinity_GG_350_c1_g1_i1,blat.proc3825148.chain_649	3
scaffold_17	alternate_exon	2565158	2565383	+	asmbl_18664	none	Trinity_GG_28293_c0_g2_i2,blat.proc3825174.chain_933	2	STRG.20057.1,STRG.20057.2,blat.proc3825174.chain_935	3
scaffold_1	retained_intron	2796391	2796537	+	asmbl_1558	none	STRG.182.2,blat.proc3825164.chain_284	2	STRG.182.1,blat.proc3825164.chain_283	2
scaffold_23	retained_intron	7005777	7006309	-	asmbl_31007	none	Trinity_GG_14528_c0_g1_i2,blat.proc3825160.chain_3122	2	STRG.26025.5,blat.proc3825160.chain_3123	2
scaffold_28	alt_acceptor	6926103	6926104	-	asmbl_38366	none	STRG.29766.3	1	STRG.29766.2,blat.proc3825162.chain_2952	2
scaffold_28	starts_in_intron	5023870	5023870	+	asmbl_37566	none	STRG.29654.4,Trinity_GG_33717_c2_g1_i2,blat.proc3825178.chain_2769	3	STRG.29654.1,STRG.29654.2,blat.proc3825178.chain_2770	3
scaffold_2	retained_intron	7774792	7775188	-	asmbl_23274	none	STRG.2072.1,Trinity_GG_1154_c0_g1_i3,Trinity_GG_1154_c0_g1_i4,blat.proc3825148.chain_2099,blat.proc3825148.chain_2102,blat.proc3825148.chain_2103	6	STRG.2072.2,STRG.2072.3,blat.proc3825148.chain_2100,blat.proc3825148.chain_2101	4
scaffold_646	spliced_intron	4980	5090	-	asmbl_49493	none	STRG.30417.1,blat.proc3825162.chain_3527	2	STRG.30417.2,STRG.30417.3,blat.proc3825162.chain_3525,blat.proc3825162.chain_3526	4
scaffold_11	alternate_exon	8382145	8385126	+	asmbl_5757	none	STRG.13855.1,blat.proc3825170.chain_2358	2	STRG.13855.2,blat.proc3825170.chain_2357	2
scaffold_6	alt_acceptor	10160582	10160583	-	asmbl_48666	none	STRG.7853.1,blat.proc3825152.chain_228	2	STRG.7853.2	1
scaffold_5	skipped_exon	16202540	16203093	-	asmbl_44748	none	STRG.6805.1	1	blat.proc3825150.chain_3001	1
scaffold_23	spliced_intron	8104276	8104414	+	asmbl_31758,asmbl_31759	none	STRG.26124.1,STRG.26124.2	2	STRG.26124.3	1
scaffold_10	ends_in_intron	2786886	2786886	-	asmbl_4135	none	Trinity_GG_6692_c1_g1_i1,blat.proc3825154.chain_588	2	blat.proc3825154.chain_587	1
scaffold_6	alt_donor	17671975	17671976	+	asmbl_47776	none	STRG.8462.1,blat.proc3825168.chain_870	2	STRG.8462.2,Trinity_GG_21933_c0_g1_i2,Trinity_GG_21933_c0_g1_i5,Trinity_GG_21933_c0_g1_i7,blat.proc3825168.chain_867,blat.proc3825168.chain_869,blat.proc3825168.chain_871	7
scaffold_4	spliced_intron	4095323	4095985	+	asmbl_41219	none	STRG.4315.1,blat.proc3825166.chain_704	2	STRG.4315.2,blat.proc3825166.chain_705,blat.proc3825166.chain_709	3
scaffold_4	alt_donor	14681999	14682000	-	asmbl_43077	none	STRG.5102.1	1	STRG.5102.2	1
scaffold_5	retained_intron	15463089	15463201	-	asmbl_44677	none	STRG.6732.2	1	STRG.6732.1,blat.proc3825150.chain_2873,blat.proc3825150.chain_2874	3
scaffold_6	alternate_exon	18048042	18048443	-	asmbl_49225,asmbl_49226	none	STRG.8487.3,STRG.8487.4,blat.proc3825152.chain_918	3	STRG.8487.1,blat.proc3825152.chain_920	2
scaffold_13	spliced_intron	394778	395582	-	asmbl_9342,asmbl_9344,asmbl_9347,asmbl_9352,asmbl_9353,asmbl_9354	none	STRG.15444.1,STRG.15444.3,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i27,blat.proc3825156.chain_352,blat.proc3825156.chain_355,blat.proc3825156.chain_364	9	Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_353,blat.proc3825156.chain_359,blat.proc3825156.chain_366	6
scaffold_9	starts_in_intron	16654747	16654747	-	asmbl_55602	none	blat.proc3825154.chain_283	1	STRG.11813.1,blat.proc3825154.chain_279,blat.proc3825154.chain_280,blat.proc3825154.chain_281,blat.proc3825154.chain_282	5
scaffold_5	spliced_intron	4948779	4949120	+	asmbl_45317	none	STRG.5954.1,Trinity_GG_20574_c0_g1_i1,blat.proc3825166.chain_2183	3	STRG.5954.2,STRG.5954.3	2
scaffold_19	spliced_intron	13192750	13192828	-	asmbl_22622	none	blat.proc3825158.chain_3434	1	Trinity_GG_12588_c1_g1_i9,blat.proc3825158.chain_3437	2
scaffold_19	alternate_exon	7583723	7586301	+	asmbl_21471,asmbl_21472	none	STRG.22236.1,STRG.22236.2,Trinity_GG_29596_c1_g1_i2,blat.proc3825174.chain_3233,blat.proc3825174.chain_3236,blat.proc3825174.chain_3239	6	STRG.22236.3,Trinity_GG_29596_c0_g1_i2,blat.proc3825174.chain_3234	3
scaffold_1	ends_in_intron	3681609	3681609	+	asmbl_1629	none	STRG.242.3	1	blat.proc3825164.chain_371	1
scaffold_8	alternate_exon	1127366	1134554	+	asmbl_52683	none	STRG.9752.1	1	STRG.9752.2	1
scaffold_11	starts_in_intron	8637222	8637222	+	asmbl_5820	none	Trinity_GG_24946_c0_g1_i4,blat.proc3825170.chain_2411	2	STRG.13890.1,Trinity_GG_24946_c0_g1_i2,blat.proc3825170.chain_2410	3
scaffold_5	skipped_exon	13235186	13235685	+	asmbl_45862,asmbl_45863	none	STRG.6565.1,STRG.6565.2,blat.proc3825166.chain_2741,blat.proc3825166.chain_2743	4	STRG.6565.3	1
scaffold_20	retained_intron	5923668	5924088	-	asmbl_25788,asmbl_25789	none	STRG.23199.1,STRG.23199.2,Trinity_GG_12941_c0_g1_i5,blat.proc3825160.chain_277,blat.proc3825160.chain_281	5	STRG.23199.4,blat.proc3825160.chain_276	2
scaffold_15	spliced_intron	1598964	1599034	+	asmbl_15023	none	STRG.17976.1,blat.proc3825172.chain_2684	2	blat.proc3825172.chain_2683	1
scaffold_7	spliced_intron	12082951	12083025	+	asmbl_50221	none	STRG.9316.4	1	STRG.9316.1,STRG.9316.2,blat.proc3825168.chain_1845	3
scaffold_4	spliced_intron	5651119	5651379	-	asmbl_42616,asmbl_42619,asmbl_42620,asmbl_42625,asmbl_42627	none	STRG.4472.1,STRG.4472.3,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_666,blat.proc3825150.chain_667	6	STRG.4472.2,blat.proc3825150.chain_658,blat.proc3825150.chain_663,blat.proc3825150.chain_664,blat.proc3825150.chain_668	5
scaffold_10	starts_in_intron	13626782	13626782	-	asmbl_4918	none	blat.proc3825154.chain_1604	1	STRG.12963.1,blat.proc3825154.chain_1603	2
scaffold_16	retained_intron	8581350	8581577	+	asmbl_16409	none	blat.proc3825174.chain_356	1	STRG.19485.1,STRG.19485.2,blat.proc3825174.chain_353,blat.proc3825174.chain_355,blat.proc3825174.chain_357	5
scaffold_24	starts_in_intron	8957972	8957972	+	asmbl_32465	none	Trinity_GG_32190_c0_g1_i1,blat.proc3825178.chain_111	2	STRG.26918.1,STRG.26918.2,Trinity_GG_32190_c0_g1_i2,blat.proc3825178.chain_110	4
scaffold_3	alternate_exon	14215721	14215865	-	asmbl_39341	none	STRG.3758.1	1	STRG.3758.2	1
scaffold_9	alt_acceptor	571263	571264	+	asmbl_53771	none	STRG.10788.1	1	STRG.10788.3	1
scaffold_2	skipped_exon	7042421	7042836	+	asmbl_24520,asmbl_24521	none	Trinity_GG_18468_c0_g1_i2,Trinity_GG_18468_c0_g1_i5,blat.proc3825164.chain_2192,blat.proc3825164.chain_2193	4	STRG.2044.1,Trinity_GG_18468_c0_g1_i1,Trinity_GG_18468_c0_g1_i3,blat.proc3825164.chain_2194,blat.proc3825164.chain_2195	5
scaffold_14	alt_acceptor	13601365	13601366	+	asmbl_12487,asmbl_12488	none	blat.proc3825172.chain_2301,blat.proc3825172.chain_2302	2	STRG.17648.1,STRG.17648.2	2
scaffold_2	alt_acceptor	18342009	18342010	+	asmbl_25223	none	STRG.2715.3	1	STRG.2715.2	1
scaffold_10	alternate_exon	4047331	4049796	+	asmbl_3104	none	STRG.12245.2	1	Trinity_GG_24107_c0_g1_i1,blat.proc3825170.chain_953	2
scaffold_6	alt_acceptor	12003111	12003112	+	asmbl_47367,asmbl_47370	none	STRG.7971.1,STRG.7971.2	2	STRG.7971.3	1
scaffold_27	retained_intron	1026348	1026649	-	asmbl_36741	none	blat.proc3825162.chain_1754	1	STRG.28610.1,STRG.28610.2,STRG.28610.3,blat.proc3825162.chain_1755,blat.proc3825162.chain_1756	5
scaffold_16	spliced_intron	7216868	7217206	-	asmbl_17177	none	STRG.19399.3	1	STRG.19399.1,STRG.19399.2,Trinity_GG_10855_c0_g1_i8,blat.proc3825158.chain_478	4
scaffold_20	ends_in_intron	7210912	7210912	+	asmbl_26710	none	Trinity_GG_30160_c0_g1_i3,blat.proc3825176.chain_455	2	STRG.23290.1,STRG.23290.2,STRG.23290.3,Trinity_GG_30160_c0_g1_i1,blat.proc3825176.chain_453,blat.proc3825176.chain_454	6
scaffold_5	starts_in_intron	4723297	4723297	+	asmbl_45292	none	blat.proc3825166.chain_2152	1	STRG.5927.1,blat.proc3825166.chain_2154	2
scaffold_26	retained_intron	3562965	3563144	+	asmbl_34789,asmbl_34790	none	STRG.28036.5,Trinity_GG_32778_c0_g1_i5,blat.proc3825178.chain_1076,blat.proc3825178.chain_1077	4	STRG.28036.4	1
scaffold_10	spliced_intron	5823736	5824133	+	asmbl_3207	none	STRG.12406.3,Trinity_GG_24196_c0_g1_i3,blat.proc3825170.chain_1101	3	STRG.12406.1,blat.proc3825170.chain_1102	2
scaffold_16	spliced_intron	429984	430051	-	asmbl_16870,asmbl_16871,asmbl_16872,asmbl_16873,asmbl_16874,asmbl_16876,asmbl_16877,asmbl_16878,asmbl_16879,asmbl_16880	none	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_196,blat.proc3825158.chain_197,blat.proc3825158.chain_198,blat.proc3825158.chain_200,blat.proc3825158.chain_202,blat.proc3825158.chain_203,blat.proc3825158.chain_204,blat.proc3825158.chain_205	10	blat.proc3825158.chain_199,blat.proc3825158.chain_201	2
scaffold_28	ends_in_intron	5242759	5242759	+	asmbl_37577,asmbl_37579	none	STRG.29677.3,Trinity_GG_33753_c0_g1_i1,blat.proc3825178.chain_2848	3	STRG.29677.1,Trinity_GG_33753_c0_g1_i3,blat.proc3825178.chain_2846	3
scaffold_15	alt_donor	11399364	11399365	-	asmbl_14498,asmbl_14499	none	STRG.18606.4,blat.proc3825156.chain_3364	2	STRG.18606.1,STRG.18606.2,STRG.18606.3,STRG.18606.5,STRG.18606.6,blat.proc3825156.chain_3363,blat.proc3825156.chain_3365,blat.proc3825156.chain_3366	8
scaffold_14	retained_intron	8651388	8651714	-	asmbl_13333	none	STRG.17300.1,blat.proc3825156.chain_2138	2	STRG.17300.2,blat.proc3825156.chain_2139	2
scaffold_1	ends_in_intron	4575202	4575202	-	asmbl_206	none	blat.proc3825148.chain_154	1	STRG.285.1,blat.proc3825148.chain_155,blat.proc3825148.chain_159,blat.proc3825148.chain_160	4
scaffold_28	alt_acceptor	36594	36595	+	asmbl_37248,asmbl_37249	none	STRG.29236.1,STRG.29236.2,blat.proc3825178.chain_2454,blat.proc3825178.chain_2456	4	blat.proc3825178.chain_2455	1
scaffold_20	retained_intron	5845427	5845613	-	asmbl_25778	none	STRG.23185.2,Trinity_GG_12929_c0_g1_i1,blat.proc3825160.chain_257	3	STRG.23185.1,blat.proc3825160.chain_256	2
scaffold_6	starts_in_intron	4316711	4316711	+	asmbl_46877	none	Trinity_GG_21371_c1_g1_i1,blat.proc3825166.chain_3616	2	STRG.7409.1,STRG.7409.2,blat.proc3825166.chain_3612,blat.proc3825166.chain_3613,blat.proc3825166.chain_3614	5
scaffold_13	alt_donor	15679041	15679042	+	asmbl_11531	none	STRG.16609.1	1	STRG.16609.2	1
scaffold_18	alt_acceptor	2539030	2539031	+	asmbl_20412	none	STRG.21125.1,blat.proc3825174.chain_2033	2	STRG.21125.2	1
scaffold_16	alt_acceptor	9572168	9572169	+	asmbl_16498	none	Trinity_GG_28028_c0_g1_i1	1	STRG.19557.1	1
scaffold_18	retained_intron	823947	824156	+	asmbl_20326,asmbl_20328,asmbl_20330	none	STRG.21008.2,STRG.21008.3,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	4	STRG.21008.1,blat.proc3825174.chain_1871,blat.proc3825174.chain_1872	3
scaffold_9	retained_intron	3711582	3711674	-	asmbl_54933	none	STRG.10985.1,Trinity_GG_6069_c1_g1_i1,blat.proc3825152.chain_3184	3	STRG.10985.2,Trinity_GG_6069_c1_g1_i2,blat.proc3825152.chain_3185	3
scaffold_10	retained_intron	2668937	2669198	+	asmbl_2987	none	blat.proc3825170.chain_844	1	STRG.12087.1,STRG.12087.2,blat.proc3825170.chain_843	3
scaffold_11	alt_donor	4330958	4330959	-	asmbl_6596,asmbl_6597	none	STRG.13525.1,blat.proc3825154.chain_2132,blat.proc3825154.chain_2133,blat.proc3825154.chain_2137	4	STRG.13525.2,blat.proc3825154.chain_2135,blat.proc3825154.chain_2136	3
scaffold_24	alt_acceptor	9121852	9121853	+	asmbl_32516	none	STRG.26939.1,Trinity_GG_32182_c0_g1_i4,blat.proc3825178.chain_95	3	STRG.26939.2,blat.proc3825178.chain_97	2
scaffold_25	starts_in_intron	6070801	6070801	-	asmbl_34324	none	blat.proc3825162.chain_847	1	STRG.27490.1,STRG.27490.2,STRG.27490.3,STRG.27490.4,blat.proc3825162.chain_845,blat.proc3825162.chain_846,blat.proc3825162.chain_848,blat.proc3825162.chain_849,blat.proc3825162.chain_850	9
scaffold_8	retained_exon	11101710	11101823	-	asmbl_52132,asmbl_52133	none	STRG.10326.1,STRG.10326.3,blat.proc3825152.chain_2586	3	STRG.10326.2,blat.proc3825152.chain_2585	2
scaffold_14	skipped_exon	2247236	2247917	-	asmbl_12926,asmbl_12927	none	STRG.16830.2,Trinity_GG_9429_c0_g1_i3,blat.proc3825156.chain_1652	3	STRG.16830.1,Trinity_GG_9429_c0_g1_i1,Trinity_GG_9429_c0_g1_i2,blat.proc3825156.chain_1650,blat.proc3825156.chain_1651	5
scaffold_4	retained_intron	6129993	6130181	-	asmbl_42652	none	STRG.4483.1,Trinity_GG_2512_c0_g2_i1	2	STRG.4483.2	1
scaffold_8	ends_in_intron	17495474	17495474	+	asmbl_53481	none	STRG.10682.2,Trinity_GG_23212_c2_g1_i1,blat.proc3825168.chain_3158	3	STRG.10682.1,STRG.10682.3,blat.proc3825168.chain_3150,blat.proc3825168.chain_3151,blat.proc3825168.chain_3152,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	7
scaffold_25	spliced_intron	8680664	8680776	+	asmbl_33745	none	STRG.27687.2,blat.proc3825178.chain_778	2	STRG.27687.1,blat.proc3825178.chain_779	2
scaffold_2	retained_intron	14360465	14360586	+	asmbl_24923	none	blat.proc3825164.chain_2692	1	STRG.2438.1,STRG.2438.2,blat.proc3825164.chain_2689,blat.proc3825164.chain_2691	4
scaffold_22	spliced_intron	9540632	9540817	-	asmbl_29546	none	blat.proc3825160.chain_2394	1	STRG.25286.1,blat.proc3825160.chain_2393	2
scaffold_27	ends_in_intron	6195321	6195321	+	asmbl_36381	none	blat.proc3825178.chain_2233	1	STRG.29014.3	1
scaffold_17	alt_donor	11567798	11567799	+	asmbl_19237	none	STRG.20703.1,Trinity_GG_28635_c0_g1_i1,blat.proc3825174.chain_1548	3	STRG.20703.2,STRG.20703.3,STRG.20703.4	3
scaffold_5	ends_in_intron	17225007	17225007	+	asmbl_46148	none	blat.proc3825166.chain_3079	1	STRG.6896.1,blat.proc3825166.chain_3076,blat.proc3825166.chain_3077	3
scaffold_19	skipped_exon	12972587	12973050	-	asmbl_22575,asmbl_22578	none	STRG.22618.2,Trinity_GG_12569_c0_g1_i6,blat.proc3825158.chain_3364	3	STRG.22618.1,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3363	5
scaffold_10	spliced_intron	785638	785839	+	asmbl_2866,asmbl_2867,asmbl_2870,asmbl_2874,asmbl_2875,asmbl_2876	none	STRG.11971.7,STRG.11971.8,blat.proc3825170.chain_654,blat.proc3825170.chain_658,blat.proc3825170.chain_659,blat.proc3825170.chain_660,blat.proc3825170.chain_661	7	Trinity_GG_23932_c1_g1_i5,blat.proc3825170.chain_657	2
scaffold_2	retained_exon	16357572	16357813	+	asmbl_25121	none	STRG.2575.1,blat.proc3825164.chain_2859	2	STRG.2575.2,blat.proc3825164.chain_2858	2
scaffold_4	alt_acceptor	5652387	5652388	-	asmbl_42620,asmbl_42621,asmbl_42624,asmbl_42625	none	STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_663,blat.proc3825150.chain_666	5	STRG.4472.1,STRG.4472.2,STRG.4472.3,Trinity_GG_2475_c0_g1_i10,blat.proc3825150.chain_657,blat.proc3825150.chain_659,blat.proc3825150.chain_661,blat.proc3825150.chain_662	8
scaffold_2	alt_acceptor	15507893	15507894	-	asmbl_23638	none	blat.proc3825148.chain_2501	1	STRG.2513.1,blat.proc3825148.chain_2504	2
scaffold_2	starts_in_intron	2075397	2075397	+	asmbl_24235	none	Trinity_GG_18249_c0_g1_i2,blat.proc3825164.chain_1804	2	STRG.1662.1,STRG.1662.2,Trinity_GG_18249_c0_g1_i1,Trinity_GG_18249_c0_g1_i3,blat.proc3825164.chain_1803,blat.proc3825164.chain_1805	6
scaffold_27	starts_in_intron	631821	631821	+	asmbl_35962	none	Trinity_GG_33104_c0_g1_i2,blat.proc3825178.chain_1674	2	STRG.28584.1,Trinity_GG_33104_c0_g1_i1,blat.proc3825178.chain_1675	3
scaffold_22	spliced_intron	11543991	11544062	+	asmbl_30408	none	STRG.25505.3	1	STRG.25505.2,blat.proc3825176.chain_2435	2
scaffold_15	alt_acceptor	12870897	12870898	-	asmbl_14607	none	STRG.18739.2	1	STRG.18739.1,Trinity_GG_10520_c0_g1_i1,blat.proc3825156.chain_3596	3
scaffold_23	starts_in_intron	9833961	9833961	-	asmbl_31112	none	Trinity_GG_14650_c0_g1_i3,blat.proc3825160.chain_3353	2	STRG.26184.1	1
scaffold_19	alt_acceptor	12687694	12687695	-	asmbl_22527,asmbl_22528,asmbl_22529	none	STRG.22592.1,STRG.22592.2,blat.proc3825158.chain_3366,blat.proc3825158.chain_3368,blat.proc3825158.chain_3369	5	blat.proc3825158.chain_3367	1
scaffold_7	retained_intron	13198531	13198748	-	asmbl_51296,asmbl_51298,asmbl_51299	none	blat.proc3825152.chain_1785,blat.proc3825152.chain_1787,blat.proc3825152.chain_1789	3	STRG.9431.1,blat.proc3825152.chain_1782,blat.proc3825152.chain_1783,blat.proc3825152.chain_1788	4
scaffold_24	spliced_intron	9117195	9117393	+	asmbl_32506,asmbl_32507,asmbl_32508,asmbl_32509,asmbl_32510,asmbl_32511,asmbl_32513,asmbl_32514	none	STRG.26942.1,blat.proc3825178.chain_172,blat.proc3825178.chain_173,blat.proc3825178.chain_175,blat.proc3825178.chain_178,blat.proc3825178.chain_179,blat.proc3825178.chain_180	7	blat.proc3825178.chain_177	1
scaffold_4	alt_acceptor	4417028	4417029	+	asmbl_41249	none	Trinity_GG_19749_c0_g1_i21,blat.proc3825166.chain_850	2	blat.proc3825166.chain_852	1
scaffold_27	alt_acceptor	3912132	3912133	-	asmbl_36933	none	STRG.28851.2	1	STRG.28851.1,blat.proc3825162.chain_2101	2
scaffold_17	retained_exon	9030392	9031033	-	asmbl_18140,asmbl_18142,asmbl_18143	none	STRG.20532.1,STRG.20532.4,STRG.20532.5	3	STRG.20532.3	1
scaffold_340	spliced_intron	809	1024	+	asmbl_41014	none	STRG.30295.1	1	STRG.30295.2,Trinity_GG_34083_c0_g1_i3,blat.proc3825178.chain_3392	3
scaffold_16	spliced_intron	433763	434014	-	asmbl_16874,asmbl_16875,asmbl_16879	none	STRG.19041.2,blat.proc3825158.chain_200,blat.proc3825158.chain_201	3	blat.proc3825158.chain_198,blat.proc3825158.chain_199,blat.proc3825158.chain_202,blat.proc3825158.chain_204	4
scaffold_5	skipped_exon	2608393	2611347	+	asmbl_45190	none	blat.proc3825166.chain_2013	1	STRG.5788.1,blat.proc3825166.chain_2012	2
scaffold_4	spliced_intron	6286227	6286323	-	asmbl_42667,asmbl_42671,asmbl_42672	none	STRG.4498.1,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778	7	Trinity_GG_2543_c0_g1_i1,blat.proc3825150.chain_779	2
scaffold_1	spliced_intron	15888367	15889037	+	asmbl_2455	none	Trinity_GG_17960_c0_g1_i3,blat.proc3825164.chain_1261	2	STRG.1119.2,blat.proc3825164.chain_1260	2
scaffold_17	alternate_exon	2713862	2713888	+	asmbl_18691	none	STRG.20070.2	1	STRG.20070.1	1
scaffold_24	retained_intron	10779531	10779624	-	asmbl_33220,asmbl_33221	none	blat.proc3825162.chain_369,blat.proc3825162.chain_370	2	STRG.27043.1,blat.proc3825162.chain_367,blat.proc3825162.chain_368	3
scaffold_15	retained_intron	11402043	11402524	-	asmbl_14494,asmbl_14496	none	STRG.18606.2,blat.proc3825156.chain_3365	2	STRG.18606.3,blat.proc3825156.chain_3366	2
scaffold_2	alt_donor	3373625	3373626	+	asmbl_24280	none	STRG.1773.3	1	STRG.1773.2,blat.proc3825164.chain_1895	2
scaffold_26	ends_in_intron	5557093	5557093	+	asmbl_35022	none	Trinity_GG_32902_c3_g1_i1,blat.proc3825178.chain_1306	2	STRG.28266.1,blat.proc3825178.chain_1302	2
scaffold_23	starts_in_intron	3512935	3512935	-	asmbl_30805	none	blat.proc3825160.chain_2979	1	STRG.25774.1,STRG.25774.2,Trinity_GG_14435_c0_g1_i6,blat.proc3825160.chain_2975,blat.proc3825160.chain_2976,blat.proc3825160.chain_2977,blat.proc3825160.chain_2978	7
scaffold_26	retained_exon	4142374	4142407	+	asmbl_34871	none	STRG.28122.1	1	STRG.28122.2,STRG.28122.4	2
scaffold_15	retained_exon	6888189	6888245	-	asmbl_14260,asmbl_14263,asmbl_14264,asmbl_14265,asmbl_14268,asmbl_14269,asmbl_14270	none	STRG.18301.1,STRG.18301.2,STRG.18301.3,STRG.18301.4,STRG.18301.5,blat.proc3825156.chain_3151,blat.proc3825156.chain_3152,blat.proc3825156.chain_3153,blat.proc3825156.chain_3156,blat.proc3825156.chain_3159	10	STRG.18301.7	1
scaffold_4	retained_exon	12641759	12641861	-	asmbl_42943	none	STRG.4905.1,Trinity_GG_2731_c0_g1_i1,blat.proc3825150.chain_1089	3	STRG.4905.2,Trinity_GG_2731_c0_g1_i2,blat.proc3825150.chain_1090	3
scaffold_11	retained_intron	11943939	11944171	-	asmbl_7049	none	Trinity_GG_7854_c1_g1_i1,blat.proc3825154.chain_2597	2	STRG.14177.4,blat.proc3825154.chain_2596	2
scaffold_14	alt_donor	921302	921303	+	asmbl_11781	none	STRG.16761.3	1	STRG.16761.1,STRG.16761.2,blat.proc3825172.chain_1522	3
scaffold_13	spliced_intron	7936040	7936337	-	asmbl_9913,asmbl_9914,asmbl_9916,asmbl_9917	none	STRG.16070.1,STRG.16070.2,blat.proc3825156.chain_874,blat.proc3825156.chain_875,blat.proc3825156.chain_877,blat.proc3825156.chain_878	6	STRG.16070.3,STRG.16070.4,blat.proc3825156.chain_876	3
scaffold_2	ends_in_intron	4680876	4680876	+	asmbl_24378	none	blat.proc3825164.chain_1932	1	STRG.1894.1,blat.proc3825164.chain_1933,blat.proc3825164.chain_1934	3
scaffold_23	alt_acceptor	5581281	5581282	+	asmbl_31577,asmbl_31578,asmbl_31579,asmbl_31582,asmbl_31583,asmbl_31584	none	STRG.25933.1,STRG.25933.2,STRG.25933.3,blat.proc3825176.chain_2834,blat.proc3825176.chain_2835,blat.proc3825176.chain_2837,blat.proc3825176.chain_2838,blat.proc3825176.chain_2839,blat.proc3825176.chain_2840	9	STRG.25933.5,blat.proc3825176.chain_2841	2
scaffold_17	retained_exon	13087497	13087527	+	asmbl_19316	none	STRG.20805.2,blat.proc3825174.chain_1694,blat.proc3825174.chain_1696	3	STRG.20805.1,blat.proc3825174.chain_1695	2
scaffold_5	retained_intron	10536961	10538269	-	asmbl_44364,asmbl_44365,asmbl_44366	none	STRG.6340.1,STRG.6340.4,blat.proc3825150.chain_2536,blat.proc3825150.chain_2537,blat.proc3825150.chain_2538	5	STRG.6340.3,Trinity_GG_3563_c0_g1_i4,Trinity_GG_3563_c0_g1_i7,blat.proc3825150.chain_2535	4
scaffold_14	retained_intron	3160065	3160251	+	asmbl_11913,asmbl_11923,asmbl_11924	none	Trinity_GG_26576_c0_g1_i11,blat.proc3825172.chain_1605,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610	4	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1611	14
scaffold_13	alt_acceptor	7218247	7218248	+	asmbl_11023	none	blat.proc3825172.chain_811	1	STRG.16019.1,blat.proc3825172.chain_809,blat.proc3825172.chain_810,blat.proc3825172.chain_812,blat.proc3825172.chain_813,blat.proc3825172.chain_815	6
scaffold_6	spliced_intron	11114758	11114940	-	asmbl_48740,asmbl_48741,asmbl_48742	none	STRG.7925.1,STRG.7925.2,Trinity_GG_4505_c0_g1_i4,blat.proc3825152.chain_328	4	STRG.7925.3,Trinity_GG_4505_c0_g1_i1,blat.proc3825152.chain_327	3
scaffold_21	alt_acceptor	9866643	9866644	-	asmbl_27977	none	STRG.24445.3	1	STRG.24445.2	1
scaffold_10	spliced_intron	9071539	9071698	+	asmbl_3361,asmbl_3365,asmbl_3366	none	STRG.12659.1,STRG.12659.2,STRG.12659.3,blat.proc3825170.chain_1292	4	Trinity_GG_24297_c1_g1_i1,blat.proc3825170.chain_1293	2
scaffold_12	alternate_exon	7222272	7222529	+	asmbl_7730	none	blat.proc3825170.chain_3255	1	STRG.14792.2,blat.proc3825170.chain_3256	2
scaffold_20	spliced_intron	10861471	10862078	+	asmbl_26999,asmbl_27000	none	STRG.23612.2,blat.proc3825176.chain_806	2	STRG.23612.1,Trinity_GG_30381_c0_g1_i3,Trinity_GG_30381_c0_g1_i4,blat.proc3825176.chain_805,blat.proc3825176.chain_807	5
scaffold_22	ends_in_intron	7911060	7911060	+	asmbl_30233	none	blat.proc3825176.chain_2278	1	Trinity_GG_31240_c0_g1_i1,blat.proc3825176.chain_2276	2
scaffold_21	starts_in_intron	2655800	2655800	-	asmbl_27485	none	blat.proc3825160.chain_976	1	STRG.23906.1,STRG.23906.2,STRG.23906.3,Trinity_GG_13292_c0_g1_i3,blat.proc3825160.chain_977,blat.proc3825160.chain_981,blat.proc3825160.chain_983	7
scaffold_2	starts_in_intron	14275931	14275931	+	asmbl_24905	none	blat.proc3825164.chain_2594	1	STRG.2428.1,STRG.2428.2,blat.proc3825164.chain_2591,blat.proc3825164.chain_2595,blat.proc3825164.chain_2596,blat.proc3825164.chain_2597	6
scaffold_23	starts_in_intron	5333810	5333810	+	asmbl_31566	none	Trinity_GG_31612_c0_g1_i2,blat.proc3825176.chain_2862	2	STRG.25912.1,blat.proc3825176.chain_2863	2
scaffold_5	skipped_exon	15044005	15044293	-	asmbl_44636	none	Trinity_GG_3732_c0_g1_i2,blat.proc3825150.chain_2825	2	STRG.6698.2,STRG.6698.4,STRG.6698.5,Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2827	5
scaffold_8	spliced_intron	4082268	4082465	+	asmbl_52809,asmbl_52810,asmbl_52813	none	STRG.9889.1,STRG.9889.2,blat.proc3825168.chain_2479,blat.proc3825168.chain_2480	4	blat.proc3825168.chain_2481	1
scaffold_13	skipped_exon	1378319	1378521	-	asmbl_9404,asmbl_9406,asmbl_9408	none	STRG.15508.1,STRG.15508.2,blat.proc3825156.chain_341,blat.proc3825156.chain_342	4	blat.proc3825156.chain_340,blat.proc3825156.chain_343	2
scaffold_14	alt_acceptor	1552214	1552215	-	asmbl_12891	none	STRG.16798.1,blat.proc3825156.chain_1571	2	STRG.16798.2,blat.proc3825156.chain_1570	2
scaffold_15	alt_donor	10632715	10632716	+	asmbl_15458,asmbl_15460	none	STRG.18550.2,STRG.18550.3,blat.proc3825172.chain_3203	3	STRG.18550.1,blat.proc3825172.chain_3204	2
scaffold_4	retained_intron	14648742	14648884	-	asmbl_43066	none	blat.proc3825150.chain_1236	1	STRG.5090.1,STRG.5090.2,STRG.5090.3,blat.proc3825150.chain_1237,blat.proc3825150.chain_1238	5
scaffold_27	alt_acceptor	6241749	6241750	+	asmbl_36388	none	STRG.29012.1,Trinity_GG_33367_c0_g1_i2,blat.proc3825178.chain_2214	3	Trinity_GG_33367_c0_g1_i1,blat.proc3825178.chain_2215	2
scaffold_3	spliced_intron	14332211	14332313	+	asmbl_40509	none	blat.proc3825166.chain_249	1	STRG.3779.1,blat.proc3825166.chain_247,blat.proc3825166.chain_248	3
scaffold_27	alternate_exon	3090401	3091908	-	asmbl_36892,asmbl_36893	none	STRG.28796.4,STRG.28796.6	2	blat.proc3825162.chain_2066	1
scaffold_14	retained_intron	11550073	11550179	+	asmbl_12387	none	STRG.17490.2	1	STRG.17490.1,blat.proc3825172.chain_2213	2
scaffold_9	alt_acceptor	12113295	12113296	+	asmbl_54409	none	STRG.11537.1,blat.proc3825170.chain_366	2	STRG.11537.2	1
scaffold_5	retained_intron	15031404	15031492	-	asmbl_44631	none	blat.proc3825150.chain_2861	1	STRG.6696.1,blat.proc3825150.chain_2863	2
scaffold_1	spliced_intron	14359766	14359977	-	asmbl_904,asmbl_905,asmbl_907,asmbl_908,asmbl_909	none	STRG.1037.1,STRG.1037.2,STRG.1037.3,blat.proc3825148.chain_1031,blat.proc3825148.chain_1032,blat.proc3825148.chain_1034,blat.proc3825148.chain_1035	7	Trinity_GG_546_c0_g1_i5,blat.proc3825148.chain_1033	2
scaffold_21	alt_acceptor	266838	266839	+	asmbl_28253	none	STRG.23724.2,Trinity_GG_30449_c0_g1_i3,blat.proc3825176.chain_930	3	STRG.23724.1,Trinity_GG_30449_c0_g1_i1,blat.proc3825176.chain_929	3
scaffold_27	alternate_exon	3649290	3649336	-	asmbl_36914	none	STRG.28834.2,Trinity_GG_16157_c0_g1_i2,blat.proc3825162.chain_2072	3	STRG.28834.1,blat.proc3825162.chain_2074	2
scaffold_26	starts_in_intron	7777391	7777391	+	asmbl_35149	none	blat.proc3825178.chain_1509	1	STRG.28406.5,Trinity_GG_33026_c0_g1_i2,blat.proc3825178.chain_1506,blat.proc3825178.chain_1510	4
scaffold_14	spliced_intron	12755086	12755745	-	asmbl_13596,asmbl_13598	none	STRG.17591.1,blat.proc3825156.chain_2475	2	STRG.17591.2,blat.proc3825156.chain_2474,blat.proc3825156.chain_2476	3
scaffold_1	alternate_exon	20342580	20348433	+	asmbl_2617,asmbl_2618	none	STRG.1396.2,STRG.1396.3,Trinity_GG_18153_c0_g1_i4,blat.proc3825164.chain_1586,blat.proc3825164.chain_1594,blat.proc3825164.chain_1596,blat.proc3825164.chain_1597	7	STRG.1396.4,Trinity_GG_18153_c2_g1_i1,Trinity_GG_18153_c2_g1_i3,blat.proc3825164.chain_1592,blat.proc3825164.chain_1593	5
scaffold_16	spliced_intron	10441689	10441848	+	asmbl_16532	none	STRG.19615.2	1	Trinity_GG_28034_c0_g1_i3,blat.proc3825174.chain_499	2
scaffold_23	retained_intron	8125986	8126005	-	asmbl_31078	none	Trinity_GG_14613_c0_g1_i1	1	STRG.26121.1	1
scaffold_14	starts_in_intron	11233563	11233563	-	asmbl_13459	none	blat.proc3825156.chain_2271	1	STRG.17458.1,blat.proc3825156.chain_2272	2
scaffold_1	retained_intron	854652	854820	+	asmbl_1424,asmbl_1427,asmbl_1429,asmbl_1430	none	STRG.43.2,STRG.43.3,STRG.43.4,Trinity_GG_17353_c0_g1_i1,Trinity_GG_17353_c0_g1_i13,blat.proc3825164.chain_142,blat.proc3825164.chain_147	7	STRG.43.1	1
scaffold_9	retained_exon	1821772	1821838	-	asmbl_54850	none	blat.proc3825152.chain_3134	1	blat.proc3825152.chain_3132	1
scaffold_12	spliced_intron	5635890	5636032	-	asmbl_8516,asmbl_8517	none	STRG.14715.1,STRG.14715.2,blat.proc3825154.chain_3251,blat.proc3825154.chain_3252	4	Trinity_GG_8225_c0_g1_i1,blat.proc3825154.chain_3253	2
scaffold_26	starts_in_intron	3047415	3047415	-	asmbl_35466	none	Trinity_GG_15714_c0_g1_i1	1	STRG.27991.1,STRG.27991.2	2
scaffold_16	starts_in_intron	10456305	10456305	+	asmbl_16541	none	Trinity_GG_28063_c1_g1_i1,blat.proc3825174.chain_549	2	STRG.19616.1,Trinity_GG_28063_c1_g1_i2,blat.proc3825174.chain_550	3
scaffold_5	retained_intron	8917573	8917791	-	asmbl_44256	none	STRG.6232.1,blat.proc3825150.chain_2380	2	STRG.6232.2,blat.proc3825150.chain_2381	2
scaffold_4	alt_acceptor	18558483	18558484	-	asmbl_43380,asmbl_43381,asmbl_43383	none	STRG.5460.1,STRG.5460.2,blat.proc3825150.chain_1650,blat.proc3825150.chain_1652	4	blat.proc3825150.chain_1651	1
scaffold_12	retained_intron	16721517	16721700	-	asmbl_9138	none	Trinity_GG_8643_c0_g1_i1,blat.proc3825156.chain_252	2	STRG.15413.1,blat.proc3825156.chain_253	2
scaffold_9	spliced_intron	2502740	2502833	-	asmbl_54878	none	STRG.10898.1,blat.proc3825152.chain_3100	2	STRG.10898.2	1
scaffold_23	skipped_exon	7278968	7279762	-	asmbl_31026	none	STRG.26052.3	1	STRG.26052.1,blat.proc3825160.chain_3144	2
scaffold_6	ends_in_intron	13200418	13200418	+	asmbl_47486	none	STRG.8079.2,blat.proc3825168.chain_595	2	STRG.8079.1,blat.proc3825168.chain_593,blat.proc3825168.chain_594	3
scaffold_5	alt_acceptor	16583731	16583732	-	asmbl_44757,asmbl_44758,asmbl_44759	none	blat.proc3825150.chain_3026,blat.proc3825150.chain_3027,blat.proc3825150.chain_3028	3	STRG.6850.2	1
scaffold_15	retained_intron	11402046	11402524	-	asmbl_14494,asmbl_14496	none	STRG.18606.2,blat.proc3825156.chain_3365	2	STRG.18606.5,blat.proc3825156.chain_3363	2
scaffold_500	retained_intron	1484	1625	+	asmbl_46495	none	blat.proc3825178.chain_3437	1	blat.proc3825178.chain_3434	1
scaffold_8	spliced_intron	6028914	6029014	+	asmbl_52924,asmbl_52926,asmbl_52929,asmbl_52930,asmbl_52931	none	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2614,blat.proc3825168.chain_2615	5	blat.proc3825168.chain_2613	1
scaffold_5	starts_in_intron	15621095	15621095	-	asmbl_44708	none	blat.proc3825150.chain_2934	1	STRG.6750.1,STRG.6750.2,blat.proc3825150.chain_2933	3
scaffold_19	alt_acceptor	13007897	13007898	+	asmbl_21836,asmbl_21837,asmbl_21841	none	STRG.22623.2,Trinity_GG_29821_c0_g1_i1,Trinity_GG_29821_c0_g1_i10,Trinity_GG_29821_c0_g1_i11,blat.proc3825174.chain_3645,blat.proc3825174.chain_3646,blat.proc3825174.chain_3650	7	STRG.22623.1,Trinity_GG_29821_c0_g1_i14,Trinity_GG_29821_c0_g1_i5,Trinity_GG_29821_c0_g1_i6,Trinity_GG_29821_c0_g1_i8,blat.proc3825174.chain_3643,blat.proc3825174.chain_3644,blat.proc3825174.chain_3649,blat.proc3825174.chain_3652	9
scaffold_9	spliced_intron	15384227	15384899	+	asmbl_54559,asmbl_54560,asmbl_54564,asmbl_54565	none	STRG.11739.2,STRG.11739.4,blat.proc3825170.chain_498,blat.proc3825170.chain_499,blat.proc3825170.chain_500	5	blat.proc3825170.chain_502	1
scaffold_17	ends_in_intron	8320952	8320952	+	asmbl_18975	none	blat.proc3825174.chain_1235	1	STRG.20452.1,blat.proc3825174.chain_1233,blat.proc3825174.chain_1234	3
scaffold_23	ends_in_intron	9537086	9537086	-	asmbl_31109	none	blat.proc3825160.chain_3351	1	STRG.26179.1	1
scaffold_5	retained_intron	18264036	18264289	+	asmbl_46234,asmbl_46239	none	STRG.6968.5,blat.proc3825166.chain_3187	2	STRG.6968.1,STRG.6968.2,blat.proc3825166.chain_3184,blat.proc3825166.chain_3188,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	6
scaffold_27	retained_intron	1638883	1639004	-	asmbl_36775	none	blat.proc3825162.chain_1860	1	STRG.28656.1,blat.proc3825162.chain_1859	2
scaffold_5	ends_in_intron	16020471	16020471	+	asmbl_46037	none	blat.proc3825166.chain_2875	1	STRG.6789.1	1
scaffold_27	starts_in_intron	3092302	3092302	-	asmbl_36890	none	STRG.28796.3	1	STRG.28796.2,STRG.28796.4,STRG.28796.5,STRG.28796.6,blat.proc3825162.chain_2065,blat.proc3825162.chain_2068	6
scaffold_27	alt_donor	1550393	1550394	+	asmbl_36021	none	Trinity_GG_33147_c0_g1_i5,blat.proc3825178.chain_1741	2	STRG.28642.1,STRG.28642.2,Trinity_GG_33147_c0_g1_i4,blat.proc3825178.chain_1740	4
scaffold_4	alternate_exon	4552343	4552469	+	asmbl_41291	none	STRG.4367.2	1	STRG.4367.1,blat.proc3825166.chain_779	2
scaffold_12	retained_intron	4720907	4720996	-	asmbl_8433	none	Trinity_GG_8146_c0_g1_i5,blat.proc3825154.chain_3098	2	STRG.14649.1,STRG.14649.2,STRG.14649.3,STRG.14649.4,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3100,blat.proc3825154.chain_3101	8
scaffold_27	retained_intron	6196600	6196958	+	asmbl_36386	none	blat.proc3825178.chain_2229	1	STRG.29014.1,STRG.29014.4,Trinity_GG_33374_c0_g1_i2,blat.proc3825178.chain_2228	4
scaffold_10	alt_acceptor	14691916	14691917	+	asmbl_3649,asmbl_3652	none	STRG.13014.1,STRG.13014.2,blat.proc3825170.chain_1571	3	STRG.13014.3	1
scaffold_23	ends_in_intron	358581	358581	-	asmbl_30590,asmbl_30591,asmbl_30592	none	Trinity_GG_14303_c0_g1_i3,Trinity_GG_14303_c0_g1_i4,Trinity_GG_14303_c0_g1_i9,blat.proc3825160.chain_2724,blat.proc3825160.chain_2726,blat.proc3825160.chain_2727	6	STRG.25564.1,STRG.25564.2,blat.proc3825160.chain_2720,blat.proc3825160.chain_2721,blat.proc3825160.chain_2722,blat.proc3825160.chain_2723,blat.proc3825160.chain_2725,blat.proc3825160.chain_2728	8
scaffold_14	alt_donor	866502	866503	+	asmbl_11774,asmbl_11776,asmbl_11777,asmbl_11778	none	STRG.16759.1,STRG.16759.2,STRG.16759.3,Trinity_GG_26529_c0_g1_i2,blat.proc3825172.chain_1524	5	blat.proc3825172.chain_1525	1
scaffold_16	alt_acceptor	14677235	14677236	+	asmbl_16704,asmbl_16705	none	STRG.19870.2,blat.proc3825174.chain_753,blat.proc3825174.chain_754	3	STRG.19870.1	1
scaffold_2	retained_intron	10719654	10719730	+	asmbl_24725,asmbl_24726	none	STRG.2241.2,Trinity_GG_18572_c0_g1_i1,blat.proc3825164.chain_2427	3	STRG.2241.1,Trinity_GG_18572_c0_g1_i5,blat.proc3825164.chain_2426	3
scaffold_8	spliced_intron	4234132	4234567	+	asmbl_52824,asmbl_52826	none	STRG.9905.1,blat.proc3825168.chain_2491,blat.proc3825168.chain_2493	3	blat.proc3825168.chain_2492,blat.proc3825168.chain_2494	2
scaffold_14	spliced_intron	8295304	8295419	-	asmbl_13284	none	blat.proc3825156.chain_2069	1	STRG.17254.1,blat.proc3825156.chain_2067,blat.proc3825156.chain_2068	3
scaffold_1	spliced_intron	12916164	12916271	+	asmbl_2272,asmbl_2273,asmbl_2274	none	STRG.922.1,STRG.922.2,blat.proc3825164.chain_1116,blat.proc3825164.chain_1118	4	blat.proc3825164.chain_1119	1
scaffold_5	alt_donor	11630427	11630428	-	asmbl_44416,asmbl_44420	none	blat.proc3825150.chain_2640,blat.proc3825150.chain_2641	2	blat.proc3825150.chain_2642,blat.proc3825150.chain_2643	2
scaffold_12	ends_in_intron	15759998	15759998	+	asmbl_8140	none	Trinity_GG_25734_c2_g1_i1,blat.proc3825172.chain_54	2	STRG.15368.2	1
scaffold_13	starts_in_intron	7718221	7718221	-	asmbl_9905,asmbl_9906	none	blat.proc3825156.chain_889,blat.proc3825156.chain_891	2	STRG.16058.1,STRG.16058.2,blat.proc3825156.chain_888,blat.proc3825156.chain_890	4
scaffold_5	spliced_intron	15765637	15765727	+	asmbl_46014,asmbl_46016	none	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2917	3	blat.proc3825166.chain_2916,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	4
scaffold_4	starts_in_intron	14108416	14108416	+	asmbl_41850	none	blat.proc3825166.chain_1418	1	STRG.5030.1,STRG.5030.2,STRG.5030.3,STRG.5030.4,blat.proc3825166.chain_1415,blat.proc3825166.chain_1416	6
scaffold_16	ends_in_intron	9562582	9562582	+	asmbl_16494	none	blat.proc3825174.chain_465	1	STRG.19555.1,blat.proc3825174.chain_464,blat.proc3825174.chain_466	3
scaffold_1	starts_in_intron	5746436	5746436	-	asmbl_300	none	blat.proc3825148.chain_349	1	STRG.375.1,blat.proc3825148.chain_348	2
scaffold_20	skipped_exon	5549103	5550443	-	asmbl_25767,asmbl_25768,asmbl_25770,asmbl_25771	none	STRG.23182.1,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216,blat.proc3825160.chain_217	7	STRG.23182.2,STRG.23182.3	2
scaffold_18	spliced_intron	8912486	8913581	-	asmbl_20051	none	STRG.21558.1	1	STRG.21558.3,STRG.21558.8,STRG.21558.9,blat.proc3825158.chain_2451	4
scaffold_2	retained_intron	276356	276443	-	asmbl_22794	none	Trinity_GG_824_c0_g1_i1,blat.proc3825148.chain_1490	2	STRG.1517.1	1
scaffold_24	retained_intron	1945924	1946132	-	asmbl_32754	none	STRG.26421.3	1	STRG.26421.1,STRG.26421.2	2
scaffold_15	alt_acceptor	8619268	8619269	+	asmbl_15341,asmbl_15343	none	STRG.18409.1,blat.proc3825172.chain_3042,blat.proc3825172.chain_3044	3	STRG.18409.2,blat.proc3825172.chain_3043	2
scaffold_12	spliced_intron	5501660	5501870	+	asmbl_7658	none	STRG.14705.2	1	STRG.14705.1,blat.proc3825170.chain_3238,blat.proc3825170.chain_3239	3
scaffold_3	spliced_intron	14424172	14424368	+	asmbl_40520,asmbl_40521	none	STRG.3788.1,STRG.3788.2,Trinity_GG_19450_c0_g1_i2,Trinity_GG_19450_c0_g1_i4,blat.proc3825166.chain_302,blat.proc3825166.chain_305	6	Trinity_GG_19450_c0_g1_i1,Trinity_GG_19450_c0_g1_i3,blat.proc3825166.chain_304,blat.proc3825166.chain_306	4
scaffold_2	retained_intron	9791002	9791168	+	asmbl_24688	none	Trinity_GG_18541_c0_g1_i4,blat.proc3825164.chain_2362	2	STRG.2185.1,Trinity_GG_18541_c0_g1_i1,Trinity_GG_18541_c0_g1_i2,blat.proc3825164.chain_2361,blat.proc3825164.chain_2363,blat.proc3825164.chain_2364,blat.proc3825164.chain_2365,blat.proc3825164.chain_2366	8
scaffold_1	skipped_exon	12977016	12978534	+	asmbl_2290	none	blat.proc3825164.chain_1044	1	STRG.935.1,blat.proc3825164.chain_1042,blat.proc3825164.chain_1047	3
scaffold_21	ends_in_intron	1633375	1633375	+	asmbl_28345	none	blat.proc3825176.chain_1046	1	STRG.23818.1,STRG.23818.2,blat.proc3825176.chain_1045,blat.proc3825176.chain_1047	4
scaffold_21	alt_donor	1053981	1053982	-	asmbl_27376,asmbl_27379	none	STRG.23787.1,Trinity_GG_13262_c0_g1_i12,blat.proc3825160.chain_924	3	STRG.23787.2,Trinity_GG_13262_c0_g1_i2,blat.proc3825160.chain_922	3
scaffold_28	alt_donor	5228280	5228281	-	asmbl_38262,asmbl_38264	none	STRG.29674.2,blat.proc3825162.chain_2843	2	STRG.29674.1,blat.proc3825162.chain_2846,blat.proc3825162.chain_2848	3
scaffold_23	alt_acceptor	7005689	7005690	-	asmbl_31004	none	STRG.26025.3	1	STRG.26025.2,STRG.26025.5,blat.proc3825160.chain_3123	3
scaffold_4	retained_intron	19354741	19354943	-	asmbl_43439	none	Trinity_GG_3086_c0_g1_i9	1	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1681,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	7
scaffold_2	retained_intron	14193481	14193569	-	asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23569,asmbl_23571	none	STRG.2416.1,STRG.2416.2,STRG.2416.3,blat.proc3825148.chain_2413,blat.proc3825148.chain_2415	5	blat.proc3825148.chain_2414	1
scaffold_12	skipped_exon	10003814	10004420	-	asmbl_8714	none	STRG.14976.1	1	STRG.14976.2,STRG.14976.3,blat.proc3825154.chain_3480	3
scaffold_2	retained_exon	7470022	7470198	-	asmbl_23261,asmbl_23266	none	STRG.2074.3,blat.proc3825148.chain_2064	2	STRG.2074.2,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057	3
scaffold_14	alternate_exon	1159304	1163231	+	asmbl_11811	none	STRG.16773.1,Trinity_GG_26509_c0_g1_i1,blat.proc3825172.chain_1474	3	STRG.16773.2	1
scaffold_11	starts_in_intron	191649	191649	+	asmbl_5276	none	blat.proc3825170.chain_1805	1	STRG.13252.1,blat.proc3825170.chain_1804	2
scaffold_27	spliced_intron	129467	131958	-	asmbl_36635,asmbl_36637	none	STRG.28543.2,STRG.28543.3,Trinity_GG_15985_c0_g1_i5,blat.proc3825162.chain_1801	4	STRG.28543.4,STRG.28543.5,blat.proc3825162.chain_1804,blat.proc3825162.chain_1805	4
scaffold_7	alternate_exon	11833334	11833358	-	asmbl_51169	none	STRG.9292.2	1	STRG.9292.1,Trinity_GG_5234_c1_g1_i1,blat.proc3825152.chain_1638	3
scaffold_12	spliced_intron	16247233	16247328	+	asmbl_8154	none	STRG.15380.2,Trinity_GG_25754_c0_g1_i3,blat.proc3825172.chain_83	3	STRG.15380.3,Trinity_GG_25754_c0_g1_i1,blat.proc3825172.chain_84	3
scaffold_27	alt_donor	9156346	9156347	+	asmbl_36515	none	STRG.29164.1	1	STRG.29164.2	1
scaffold_13	retained_intron	16138003	16138117	+	asmbl_11554	none	STRG.16653.3,Trinity_GG_26492_c0_g1_i1	2	STRG.16653.2	1
scaffold_14	alternate_exon	8290303	8292208	-	asmbl_13279,asmbl_13280	none	STRG.17253.1,STRG.17253.2,Trinity_GG_9677_c0_g1_i1,blat.proc3825156.chain_2066,blat.proc3825156.chain_2074	5	STRG.17253.3	1
scaffold_17	alt_donor	1507922	1507923	+	asmbl_18610	none	STRG.19990.2,Trinity_GG_28264_c0_g1_i2,blat.proc3825174.chain_874	3	STRG.19990.1,Trinity_GG_28264_c0_g1_i1,blat.proc3825174.chain_875	3
scaffold_19	retained_exon	13212154	13212329	-	asmbl_22610,asmbl_22620,asmbl_22621,asmbl_22622,asmbl_22623	none	STRG.22653.1,blat.proc3825158.chain_3428,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3436	6	blat.proc3825158.chain_3430	1
scaffold_5	retained_exon	5738535	5738649	+	asmbl_45361,asmbl_45363	none	STRG.5992.4,STRG.5992.6,blat.proc3825166.chain_2131	3	STRG.5992.5,blat.proc3825166.chain_2135	2
scaffold_5	retained_intron	8413453	8414764	+	asmbl_45548	none	STRG.6187.1,blat.proc3825166.chain_2304,blat.proc3825166.chain_2305	3	STRG.6187.2,blat.proc3825166.chain_2307	2
scaffold_21	retained_exon	8278464	8278547	+	asmbl_28805	none	STRG.24368.2	1	blat.proc3825176.chain_1550	1
scaffold_17	alt_acceptor	4723129	4723130	-	asmbl_17888	none	STRG.20207.2	1	STRG.20207.1	1
scaffold_4	alternate_exon	14286305	14286419	-	asmbl_43037,asmbl_43039	none	STRG.5037.1,STRG.5037.3,blat.proc3825150.chain_1101	3	STRG.5037.2,STRG.5037.4,blat.proc3825150.chain_1100	3
scaffold_3	spliced_intron	10304998	10305546	+	asmbl_40262,asmbl_40265	none	STRG.3476.1,Trinity_GG_19250_c1_g1_i1,Trinity_GG_19250_c1_g1_i4,blat.proc3825164.chain_3700,blat.proc3825164.chain_3702	5	STRG.3476.2,Trinity_GG_19250_c1_g1_i2,Trinity_GG_19250_c3_g1_i1,blat.proc3825164.chain_3699,blat.proc3825164.chain_3704	5
scaffold_21	alternate_exon	5775965	5779864	-	asmbl_27692	none	STRG.24114.2,blat.proc3825160.chain_1203	2	blat.proc3825160.chain_1201	1
scaffold_21	alternate_exon	9868388	9868709	-	asmbl_27976	none	STRG.24445.2	1	STRG.24445.3	1
scaffold_3	retained_exon	10296535	10296612	+	asmbl_40260	none	STRG.3468.1,blat.proc3825166.chain_13	2	STRG.3468.2,blat.proc3825166.chain_14	2
scaffold_18	skipped_exon	2832889	2835573	+	asmbl_20421	none	STRG.21142.2,blat.proc3825174.chain_2050,blat.proc3825174.chain_2056	3	STRG.21142.1,blat.proc3825174.chain_2052	2
scaffold_24	starts_in_intron	10482434	10482434	+	asmbl_32566	none	STRG.27018.5,blat.proc3825178.chain_197	2	STRG.27018.4	1
scaffold_28	skipped_exon	2810466	2811511	-	asmbl_38087,asmbl_38093	none	STRG.29471.1,blat.proc3825162.chain_2599	2	STRG.29471.3,blat.proc3825162.chain_2598	2
scaffold_7	retained_intron	289521	289547	+	asmbl_49549,asmbl_49550,asmbl_49552	none	STRG.8603.2,Trinity_GG_22049_c0_g1_i1,Trinity_GG_22049_c0_g1_i3	3	STRG.8603.1	1
scaffold_17	retained_intron	9533968	9534048	+	asmbl_19107,asmbl_19108	none	Trinity_GG_28562_c0_g1_i3,blat.proc3825174.chain_1401,blat.proc3825174.chain_1403	3	STRG.20578.1,STRG.20578.2,STRG.20578.3,STRG.20578.4,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1398,blat.proc3825174.chain_1402	8
scaffold_10	ends_in_intron	11970234	11970234	+	asmbl_3512	none	Trinity_GG_24389_c0_g1_i14,blat.proc3825170.chain_1451	2	STRG.12838.1,STRG.12838.2,STRG.12838.3,STRG.12838.5,STRG.12838.6	5
scaffold_28	alt_acceptor	2684460	2684461	-	asmbl_38077	none	STRG.29448.2	1	STRG.29448.1,blat.proc3825162.chain_2625	2
scaffold_13	starts_in_intron	366248	366248	-	asmbl_9310	none	Trinity_GG_8663_c0_g1_i19,blat.proc3825156.chain_290	2	STRG.15442.1,STRG.15442.3,STRG.15442.4,Trinity_GG_8663_c0_g1_i21,Trinity_GG_8663_c0_g1_i6,blat.proc3825156.chain_295,blat.proc3825156.chain_298	7
scaffold_5	alt_acceptor	13112621	13112622	-	asmbl_44520	none	blat.proc3825150.chain_2735	1	STRG.6549.1,STRG.6549.2,blat.proc3825150.chain_2736	3
scaffold_12	starts_in_intron	9758673	9758673	+	asmbl_7875	none	blat.proc3825170.chain_3485	1	STRG.14948.1,STRG.14948.2,blat.proc3825170.chain_3484	3
scaffold_4	spliced_intron	16480998	16481263	-	asmbl_43177	none	STRG.5225.1,blat.proc3825150.chain_1404	2	STRG.5225.2,blat.proc3825150.chain_1406	2
scaffold_13	ends_in_intron	4606419	4606419	-	asmbl_9643	none	Trinity_GG_8874_c0_g1_i15,blat.proc3825156.chain_669	2	STRG.15796.1,STRG.15796.3,blat.proc3825156.chain_670	3
scaffold_5	spliced_intron	13110778	13111063	+	asmbl_45854	none	STRG.6548.1,blat.proc3825166.chain_2701	2	Trinity_GG_20856_c0_g1_i1,blat.proc3825166.chain_2702	2
scaffold_19	spliced_intron	12208560	12208717	+	asmbl_21762,asmbl_21764	none	STRG.22551.1,STRG.22551.3,Trinity_GG_29759_c0_g1_i1,blat.proc3825174.chain_3521	4	STRG.22551.2,Trinity_GG_29759_c0_g1_i3,Trinity_GG_29759_c0_g1_i5,blat.proc3825174.chain_3520,blat.proc3825174.chain_3522	5
scaffold_6	spliced_intron	3778731	3778944	+	asmbl_46851,asmbl_46855	none	STRG.7375.1,STRG.7375.3,blat.proc3825166.chain_3622,blat.proc3825166.chain_3625	4	STRG.7375.2,Trinity_GG_21375_c0_g1_i7,blat.proc3825166.chain_3620,blat.proc3825166.chain_3621,blat.proc3825166.chain_3623,blat.proc3825166.chain_3624,blat.proc3825166.chain_3627	7
scaffold_8	spliced_intron	18161229	18161474	-	asmbl_52513,asmbl_52515,asmbl_52516,asmbl_52517	none	STRG.10730.1,Trinity_GG_5967_c0_g1_i4,Trinity_GG_5967_c0_g1_i5,blat.proc3825152.chain_2997,blat.proc3825152.chain_2999,blat.proc3825152.chain_3000,blat.proc3825152.chain_3001	7	Trinity_GG_5967_c0_g1_i3,blat.proc3825152.chain_2998	2
scaffold_13	spliced_intron	2272160	2272772	-	asmbl_9437,asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449	none	STRG.15548.1,STRG.15548.2,STRG.15548.3,STRG.15548.5,blat.proc3825156.chain_390,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	9	STRG.15548.4,blat.proc3825156.chain_396	2
scaffold_25	alt_acceptor	3095414	3095415	-	asmbl_34093	none	STRG.27251.3	1	blat.proc3825162.chain_553	1
scaffold_9	retained_intron	16738922	16739205	-	asmbl_55622,asmbl_55623	none	Trinity_GG_6538_c0_g1_i3,Trinity_GG_6538_c0_g1_i4,blat.proc3825154.chain_308,blat.proc3825154.chain_309	4	STRG.11819.2,Trinity_GG_6538_c0_g1_i1,blat.proc3825154.chain_307	3
scaffold_14	alternate_exon	4600605	4600683	+	asmbl_12001	none	STRG.16996.1,Trinity_GG_26650_c0_g1_i1,blat.proc3825172.chain_1746	3	STRG.16996.2,Trinity_GG_26650_c0_g1_i2,blat.proc3825172.chain_1747	3
scaffold_21	alternate_exon	6512237	6512839	+	asmbl_28660	none	blat.proc3825176.chain_1396	1	blat.proc3825176.chain_1398	1
scaffold_20	alt_acceptor	11382677	11382678	+	asmbl_27039	none	STRG.23648.4	1	STRG.23648.1,STRG.23648.2,STRG.23648.3,STRG.23648.5,STRG.23648.6,Trinity_GG_30352_c0_g1_i1,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_757,blat.proc3825176.chain_759	9
scaffold_8	retained_intron	1801692	1801727	-	asmbl_51705,asmbl_51706	none	STRG.9780.1,STRG.9780.2	2	blat.proc3825168.chain_2303	1
scaffold_1	ends_in_intron	18028810	18028810	-	asmbl_1078	none	blat.proc3825164.chain_1345	1	STRG.1268.4	1
scaffold_19	alt_donor	12575302	12575303	-	asmbl_22521	none	STRG.22584.3	1	STRG.22584.1,STRG.22584.2,blat.proc3825158.chain_3373	3
scaffold_22	retained_exon	2388115	2388156	+	asmbl_29938,asmbl_29940,asmbl_29941	none	STRG.24781.1,blat.proc3825176.chain_1826,blat.proc3825176.chain_1827	3	blat.proc3825176.chain_1828	1
scaffold_1	retained_intron	11269937	11270054	+	asmbl_2093	none	STRG.746.3	1	STRG.746.2	1
scaffold_4	alt_acceptor	8770989	8770990	+	asmbl_41578,asmbl_41579,asmbl_41582	none	STRG.4691.1,STRG.4691.3,STRG.4691.5,Trinity_GG_19922_c0_g1_i2,blat.proc3825166.chain_1141,blat.proc3825166.chain_1142	6	STRG.4691.2,STRG.4691.4	2
scaffold_9	skipped_exon	3149490	3150174	+	asmbl_53878	none	STRG.10933.2,Trinity_GG_23392_c0_g1_i1,blat.proc3825168.chain_3459	3	STRG.10933.1,blat.proc3825168.chain_3460	2
scaffold_2	starts_in_intron	10601045	10601045	+	asmbl_24707	none	Trinity_GG_18556_c0_g1_i1,blat.proc3825164.chain_2393	2	STRG.2220.1	1
scaffold_6	retained_intron	10231662	10231807	+	asmbl_47274	none	STRG.7863.1,blat.proc3825168.chain_270	2	blat.proc3825168.chain_269	1
scaffold_1	retained_exon	6126972	6127069	-	asmbl_317,asmbl_318	none	STRG.415.1,STRG.415.2,blat.proc3825148.chain_392	3	blat.proc3825148.chain_391	1
scaffold_24	skipped_exon	9592399	9593170	-	asmbl_33139	none	STRG.26947.2	1	STRG.26947.1,STRG.26947.3,blat.proc3825162.chain_297	3
scaffold_6	retained_intron	3320771	3320929	-	asmbl_48246	none	blat.proc3825150.chain_3423	1	STRG.7338.3	1
scaffold_16	starts_in_intron	6139983	6139983	-	asmbl_17145	none	Trinity_GG_10878_c1_g1_i1,blat.proc3825158.chain_516	2	STRG.19348.1,STRG.19348.2,blat.proc3825158.chain_514,blat.proc3825158.chain_515	4
scaffold_22	alt_acceptor	6874747	6874748	+	asmbl_30132	none	STRG.25004.2,blat.proc3825176.chain_2135	2	STRG.25004.1,blat.proc3825176.chain_2137	2
scaffold_1	retained_intron	8733191	8733283	-	asmbl_485	none	blat.proc3825148.chain_568	1	STRG.576.1,blat.proc3825148.chain_569,blat.proc3825148.chain_570,blat.proc3825148.chain_571	4
scaffold_6	alt_acceptor	13132632	13132633	-	asmbl_48879	none	STRG.8070.2,Trinity_GG_4584_c0_g1_i2,blat.proc3825152.chain_460	3	STRG.8070.1,blat.proc3825152.chain_458	2
scaffold_17	starts_in_intron	7850055	7850055	+	asmbl_18922	none	Trinity_GG_28451_c1_g1_i3,blat.proc3825174.chain_1176	2	STRG.20411.1,STRG.20411.2,STRG.20411.3	3
scaffold_1	starts_in_intron	11179894	11179894	+	asmbl_2076	none	Trinity_GG_17786_c0_g1_i4,blat.proc3825164.chain_907	2	STRG.747.1,STRG.747.2,STRG.747.3,STRG.747.4,STRG.747.5,blat.proc3825164.chain_906,blat.proc3825164.chain_908,blat.proc3825164.chain_911,blat.proc3825164.chain_912,blat.proc3825164.chain_913,blat.proc3825164.chain_915,blat.proc3825164.chain_916	12
scaffold_21	starts_in_intron	676084	676084	-	asmbl_27339	none	STRG.23755.1,blat.proc3825160.chain_877	2	STRG.23755.2,STRG.23755.3,STRG.23755.4,STRG.23755.5,blat.proc3825160.chain_876	5
scaffold_18	spliced_intron	12400319	12400383	-	asmbl_20142	none	blat.proc3825158.chain_2583	1	STRG.21709.1,STRG.21709.4	2
scaffold_4	alt_donor	4414071	4414072	+	asmbl_41250,asmbl_41255,asmbl_41258	none	STRG.4349.1,Trinity_GG_19749_c0_g1_i2,blat.proc3825166.chain_842,blat.proc3825166.chain_851,blat.proc3825166.chain_853	5	STRG.4349.2,STRG.4349.4,Trinity_GG_19749_c0_g1_i11,Trinity_GG_19749_c0_g1_i14,blat.proc3825166.chain_840,blat.proc3825166.chain_844,blat.proc3825166.chain_849	7
scaffold_5	alt_acceptor	9082271	9082272	+	asmbl_45604	none	blat.proc3825166.chain_2481	1	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2479	5
scaffold_14	skipped_exon	7294285	7295260	+	asmbl_12147,asmbl_12148,asmbl_12150	none	STRG.17169.1,blat.proc3825172.chain_1939,blat.proc3825172.chain_1941	3	STRG.17169.2,blat.proc3825172.chain_1940	2
scaffold_22	starts_in_intron	7913935	7913935	+	asmbl_30230	none	Trinity_GG_31240_c1_g1_i1,blat.proc3825176.chain_2280	2	Trinity_GG_31240_c0_g2_i1	1
scaffold_25	alt_donor	5626513	5626514	-	asmbl_34273	none	blat.proc3825162.chain_829	1	STRG.27464.2,blat.proc3825162.chain_830	2
scaffold_15	retained_intron	16366344	16366420	-	asmbl_14833	none	STRG.18990.2,Trinity_GG_10664_c0_g1_i2,blat.proc3825158.chain_106	3	STRG.18990.1,Trinity_GG_10664_c0_g1_i1,blat.proc3825158.chain_107	3
scaffold_14	alt_donor	11689112	11689113	-	asmbl_13523	none	STRG.17516.1,blat.proc3825156.chain_2316	2	STRG.17516.2,STRG.17516.3,blat.proc3825156.chain_2313,blat.proc3825156.chain_2315	4
scaffold_16	spliced_intron	5754391	5755434	+	asmbl_16223,asmbl_16225	none	STRG.19319.1,blat.proc3825174.chain_156,blat.proc3825174.chain_157	3	STRG.19319.2,Trinity_GG_27853_c1_g1_i2,Trinity_GG_27853_c1_g1_i6,blat.proc3825174.chain_158,blat.proc3825174.chain_159	5
scaffold_18	spliced_intron	5905385	5905424	-	asmbl_19876	none	STRG.21337.4	1	STRG.21337.1,STRG.21337.2,Trinity_GG_11944_c1_g1_i1,blat.proc3825158.chain_2263	4
scaffold_19	starts_in_intron	5343170	5343170	-	asmbl_22155	none	Trinity_GG_12338_c0_g1_i4	1	STRG.22102.1,STRG.22102.2,STRG.22102.3,blat.proc3825158.chain_2954,blat.proc3825158.chain_2957	5
scaffold_3	alt_acceptor	16442312	16442313	+	asmbl_40622,asmbl_40623	none	STRG.3922.1,Trinity_GG_19509_c0_g1_i3,blat.proc3825166.chain_403,blat.proc3825166.chain_404	4	STRG.3922.2,STRG.3922.3	2
scaffold_10	alt_acceptor	17348973	17348974	-	asmbl_5055	none	blat.proc3825154.chain_1785	1	blat.proc3825154.chain_1786	1
scaffold_7	alternate_exon	1450112	1450145	-	asmbl_50734	none	Trinity_GG_4938_c4_g1_i1,blat.proc3825152.chain_1136	2	STRG.8648.1,STRG.8648.2	2
scaffold_6	alternate_exon	18053115	18053220	-	asmbl_49223,asmbl_49224,asmbl_49225	none	STRG.8487.1,STRG.8487.2,STRG.8487.3,blat.proc3825152.chain_918,blat.proc3825152.chain_919,blat.proc3825152.chain_920	6	STRG.8487.4	1
scaffold_16	alt_donor	2386342	2386343	-	asmbl_16966	none	STRG.19133.3	1	STRG.19133.2	1
scaffold_4	alternate_exon	18758290	18758471	-	asmbl_43387	none	STRG.5465.1	1	STRG.5465.2	1
scaffold_39	starts_in_intron	31940	31940	-	asmbl_41068	none	blat.proc3825162.chain_3207	1	STRG.30041.1	1
scaffold_16	alt_donor	672892	672893	+	asmbl_16033,asmbl_16035	none	STRG.19045.1,STRG.19045.4,Trinity_GG_27750_c0_g1_i2,Trinity_GG_27750_c0_g1_i3,blat.proc3825172.chain_3697,blat.proc3825172.chain_3699	6	STRG.19045.5,Trinity_GG_27750_c0_g1_i4,blat.proc3825172.chain_3700	3
scaffold_8	alt_donor	16040333	16040334	-	asmbl_52353	none	STRG.10585.3	1	STRG.10585.2,blat.proc3825152.chain_2822	2
scaffold_14	alt_donor	4199139	4199140	-	asmbl_13039	none	STRG.16977.2	1	STRG.16977.1,blat.proc3825156.chain_1745	2
scaffold_1	alt_acceptor	3177920	3177921	+	asmbl_1578	none	STRG.202.1,Trinity_GG_17450_c0_g1_i2,blat.proc3825164.chain_305	3	STRG.202.2,Trinity_GG_17450_c0_g1_i1,blat.proc3825164.chain_304	3
scaffold_9	starts_in_intron	6846618	6846618	-	asmbl_55081	none	blat.proc3825152.chain_3349	1	STRG.11196.1,STRG.11196.2,STRG.11196.3,blat.proc3825152.chain_3346,blat.proc3825152.chain_3347,blat.proc3825152.chain_3348	6
scaffold_25	alternate_exon	666477	666516	+	asmbl_33348	none	STRG.27122.2	1	STRG.27122.1	1
scaffold_1	retained_intron	6283222	6283603	-	asmbl_337	none	blat.proc3825148.chain_412	1	STRG.423.1,STRG.423.3,blat.proc3825148.chain_414,blat.proc3825148.chain_418	4
scaffold_2	ends_in_intron	16280959	16280959	+	asmbl_25105,asmbl_25106	none	blat.proc3825164.chain_2769,blat.proc3825164.chain_2775	2	STRG.2566.1	1
scaffold_1	alternate_exon	20341566	20342228	+	asmbl_2616	none	STRG.1396.4	1	STRG.1396.1,STRG.1396.2,STRG.1396.3,blat.proc3825164.chain_1591,blat.proc3825164.chain_1594,blat.proc3825164.chain_1596,blat.proc3825164.chain_1597	7
scaffold_10	alt_acceptor	10283708	10283709	-	asmbl_4717	none	blat.proc3825154.chain_1341	1	blat.proc3825154.chain_1348	1
scaffold_12	retained_intron	11324172	11324264	+	asmbl_7960	none	STRG.15068.2,Trinity_GG_25617_c0_g1_i1,blat.proc3825170.chain_3584	3	STRG.15068.1,Trinity_GG_25617_c0_g1_i2,blat.proc3825170.chain_3585	3
scaffold_27	retained_intron	6482619	6483087	-	asmbl_37056	none	STRG.29027.1,blat.proc3825162.chain_2272	2	STRG.29027.2	1
scaffold_20	alt_donor	2402117	2402118	+	asmbl_26487,asmbl_26488,asmbl_26489	none	STRG.22972.2,blat.proc3825176.chain_155,blat.proc3825176.chain_156,blat.proc3825176.chain_157	4	STRG.22972.1	1
scaffold_2	alternate_exon	2586390	2586468	-	asmbl_22910	none	blat.proc3825148.chain_1634	1	STRG.1708.1	1
scaffold_21	alt_donor	3256453	3256454	+	asmbl_28481	none	STRG.23951.2,blat.proc3825176.chain_1085	2	STRG.23951.1,blat.proc3825176.chain_1084	2
scaffold_5	alternate_exon	4773600	4773944	-	asmbl_44013	none	STRG.5941.3	1	STRG.5941.2,blat.proc3825150.chain_2142	2
scaffold_26	retained_intron	4155586	4155680	+	asmbl_34878	none	STRG.28120.2	1	STRG.28120.1,blat.proc3825178.chain_1202	2
scaffold_1295	starts_in_intron	817	817	+	asmbl_9292,asmbl_9293	none	Trinity_GG_34205_c0_g1_i3,blat.proc3825178.chain_3578,blat.proc3825178.chain_3580	3	STRG.30584.1,blat.proc3825178.chain_3579	2
scaffold_14	spliced_intron	1070202	1070398	+	asmbl_11794	none	STRG.16766.4	1	STRG.16766.3,Trinity_GG_26535_c0_g1_i1,blat.proc3825172.chain_1533,blat.proc3825172.chain_1535,blat.proc3825172.chain_1537,blat.proc3825172.chain_1538	6
scaffold_11	alt_acceptor	17070077	17070078	-	asmbl_7241	none	STRG.14371.2,blat.proc3825154.chain_2806	2	STRG.14371.1,STRG.14371.3,blat.proc3825154.chain_2803,blat.proc3825154.chain_2805	4
scaffold_1	starts_in_intron	12391762	12391762	+	asmbl_2201	none	Trinity_GG_17837_c0_g1_i1,blat.proc3825164.chain_1019	2	STRG.848.1,Trinity_GG_17837_c0_g1_i2,blat.proc3825164.chain_1020	3
scaffold_20	retained_exon	7196574	7197202	+	asmbl_26706	none	STRG.23289.2,blat.proc3825176.chain_409,blat.proc3825176.chain_410	3	STRG.23289.1	1
scaffold_15	retained_intron	13327877	13328035	+	asmbl_15628,asmbl_15630,asmbl_15631	none	Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3385,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	6	STRG.18771.1,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389	6
scaffold_12	skipped_exon	11915465	11917767	-	asmbl_8835	none	STRG.15103.1,Trinity_GG_8439_c0_g1_i2,blat.proc3825154.chain_3623	3	STRG.15103.2	1
scaffold_10	starts_in_intron	7831086	7831086	-	asmbl_4565	none	blat.proc3825154.chain_1062	1	STRG.12574.1,blat.proc3825154.chain_1061	2
scaffold_8	skipped_exon	16656073	16657032	+	asmbl_53465	none	STRG.10639.1,blat.proc3825168.chain_3202	2	STRG.10639.2,blat.proc3825168.chain_3201	2
scaffold_19	retained_exon	12451454	12451603	-	asmbl_22487	none	STRG.22587.1	1	STRG.22587.2	1
scaffold_10	alt_donor	2742090	2742091	+	asmbl_3005	none	STRG.12092.2,blat.proc3825170.chain_841	2	STRG.12092.1,blat.proc3825170.chain_840	2
scaffold_17	spliced_intron	7023727	7024347	+	asmbl_18887	none	Trinity_GG_28475_c0_g1_i1	1	Trinity_GG_28475_c0_g2_i1,blat.proc3825174.chain_1217,blat.proc3825174.chain_1218	3
scaffold_12	spliced_intron	15014286	15014615	-	asmbl_9032,asmbl_9035	none	STRG.15302.1,blat.proc3825156.chain_106,blat.proc3825156.chain_109	3	STRG.15302.2,blat.proc3825156.chain_107,blat.proc3825156.chain_110	3
scaffold_4	retained_intron	115885	116152	-	asmbl_42305	none	STRG.4109.2,Trinity_GG_2279_c0_g1_i1,blat.proc3825150.chain_311	3	STRG.4109.1,blat.proc3825150.chain_312	2
scaffold_12	starts_in_intron	7973185	7973185	+	asmbl_7807	none	STRG.14862.3	1	STRG.14862.1,blat.proc3825170.chain_3413,blat.proc3825170.chain_3415,blat.proc3825170.chain_3417	4
scaffold_20	spliced_intron	7469286	7469829	-	asmbl_25905,asmbl_25909,asmbl_25910	none	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_465,blat.proc3825160.chain_466	4	blat.proc3825160.chain_461,blat.proc3825160.chain_462,blat.proc3825160.chain_467	3
scaffold_19	starts_in_intron	5397131	5397131	-	asmbl_22158	none	blat.proc3825158.chain_2932	1	STRG.22106.1,Trinity_GG_12326_c0_g1_i1,blat.proc3825158.chain_2931	3
scaffold_13	alt_acceptor	3922710	3922711	-	asmbl_9591	none	STRG.15720.1,blat.proc3825156.chain_578	2	STRG.15720.2,STRG.15720.3,blat.proc3825156.chain_577	3
scaffold_8	retained_intron	6028690	6028824	+	asmbl_52927,asmbl_52931	none	blat.proc3825168.chain_2613,blat.proc3825168.chain_2615	2	blat.proc3825168.chain_2609,blat.proc3825168.chain_2611,blat.proc3825168.chain_2612,blat.proc3825168.chain_2614	4
scaffold_7	retained_intron	1233710	1233915	+	asmbl_49595,asmbl_49599	none	Trinity_GG_22033_c0_g1_i16,Trinity_GG_22033_c0_g1_i17,blat.proc3825168.chain_1066,blat.proc3825168.chain_1080	4	STRG.8637.4	1
scaffold_13	retained_intron	4803	5031	+	asmbl_10448,asmbl_10449,asmbl_10450,asmbl_10451,asmbl_10455	none	STRG.15424.1,STRG.15424.2,STRG.15424.3,Trinity_GG_25787_c0_g1_i1,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,Trinity_GG_25787_c0_g1_i8,blat.proc3825172.chain_134,blat.proc3825172.chain_135,blat.proc3825172.chain_137,blat.proc3825172.chain_138,blat.proc3825172.chain_141	13	Trinity_GG_25787_c0_g1_i5,blat.proc3825172.chain_136	2
scaffold_10	alternate_exon	9497391	9497406	+	asmbl_3390	none	Trinity_GG_24295_c0_g1_i1,blat.proc3825170.chain_1277	2	STRG.12696.1	1
scaffold_1	alt_acceptor	2119590	2119591	-	asmbl_112	none	STRG.141.1,blat.proc3825148.chain_85	2	STRG.141.2	1
scaffold_16	retained_intron	8646214	8646704	+	asmbl_16436,asmbl_16439	none	STRG.19493.2,Trinity_GG_27990_c0_g1_i7,blat.proc3825174.chain_413,blat.proc3825174.chain_414	4	STRG.19493.1,blat.proc3825174.chain_411,blat.proc3825174.chain_415,blat.proc3825174.chain_416	4
scaffold_21	alt_acceptor	4108937	4108938	+	asmbl_28506,asmbl_28508	none	STRG.23987.1,blat.proc3825176.chain_1205,blat.proc3825176.chain_1207	3	STRG.23987.2,STRG.23987.3	2
scaffold_10	starts_in_intron	13775022	13775022	-	asmbl_4929,asmbl_4930	none	STRG.12971.2,blat.proc3825154.chain_1610	2	STRG.12971.1,blat.proc3825154.chain_1609,blat.proc3825154.chain_1611	3
scaffold_8	spliced_intron	4852903	4853082	+	asmbl_52858,asmbl_52859,asmbl_52861,asmbl_52863	none	STRG.9951.1,STRG.9951.2,Trinity_GG_22856_c0_g1_i1,blat.proc3825168.chain_2523,blat.proc3825168.chain_2524,blat.proc3825168.chain_2525,blat.proc3825168.chain_2528	7	Trinity_GG_22856_c0_g1_i2,blat.proc3825168.chain_2527	2
scaffold_7	ends_in_intron	1146115	1146115	-	asmbl_50709	none	Trinity_GG_4904_c0_g1_i1,blat.proc3825152.chain_1041	2	STRG.8622.1,blat.proc3825152.chain_1042	2
scaffold_18	retained_intron	8726290	8726425	+	asmbl_20860,asmbl_20861	none	Trinity_GG_29235_c0_g1_i3,blat.proc3825174.chain_2615,blat.proc3825174.chain_2621	3	STRG.21537.1,STRG.21537.2,STRG.21537.3,blat.proc3825174.chain_2616,blat.proc3825174.chain_2617,blat.proc3825174.chain_2618,blat.proc3825174.chain_2619,blat.proc3825174.chain_2620	8
scaffold_20	ends_in_intron	10661580	10661580	+	asmbl_26977	none	STRG.23599.1,Trinity_GG_30362_c0_g1_i3,blat.proc3825176.chain_773	3	STRG.23599.2,Trinity_GG_30362_c0_g1_i1,blat.proc3825176.chain_774	3
scaffold_15	alt_donor	14328618	14328619	-	asmbl_14719	none	Trinity_GG_10597_c0_g1_i5,blat.proc3825156.chain_3712	2	Trinity_GG_10597_c0_g1_i1,blat.proc3825156.chain_3714	2
scaffold_14	starts_in_intron	8007490	8007490	+	asmbl_12189,asmbl_12190	none	Trinity_GG_26787_c0_g1_i2,Trinity_GG_26787_c0_g1_i6,blat.proc3825172.chain_1984,blat.proc3825172.chain_1985	4	STRG.17217.2,STRG.17217.3	2
scaffold_1	alt_acceptor	4270588	4270589	+	asmbl_1659	none	STRG.261.2	1	STRG.261.1,STRG.261.3,blat.proc3825164.chain_398	3
scaffold_12	spliced_intron	14944862	14945190	-	asmbl_9016,asmbl_9017	none	STRG.15288.1,STRG.15288.2,Trinity_GG_8556_c0_g1_i4,Trinity_GG_8556_c0_g1_i5,blat.proc3825156.chain_84,blat.proc3825156.chain_85	6	Trinity_GG_8556_c0_g1_i1,blat.proc3825156.chain_86	2
scaffold_6	alternate_exon	3387451	3387481	-	asmbl_48259,asmbl_48260	none	STRG.7350.2,blat.proc3825150.chain_3481	2	STRG.7350.1,blat.proc3825150.chain_3478,blat.proc3825150.chain_3479	3
scaffold_7	alt_donor	18783530	18783531	+	asmbl_50532,asmbl_50535	none	STRG.9696.1,STRG.9696.4	2	STRG.9696.2,STRG.9696.3	2
scaffold_6	retained_exon	2843958	2844035	-	asmbl_48170,asmbl_48171	none	STRG.7282.3,blat.proc3825150.chain_3370	2	STRG.7282.1,STRG.7282.2,blat.proc3825150.chain_3368,blat.proc3825150.chain_3369	4
scaffold_1	starts_in_intron	13509338	13509338	-	asmbl_814	none	blat.proc3825148.chain_936	1	STRG.962.1,blat.proc3825148.chain_935	2
scaffold_28	alt_acceptor	1641658	1641659	+	asmbl_37316,asmbl_37318,asmbl_37319	none	STRG.29352.1,STRG.29352.2,blat.proc3825178.chain_2562,blat.proc3825178.chain_2563	4	STRG.29352.3	1
scaffold_23	retained_exon	2615904	2615926	-	asmbl_30752,asmbl_30753,asmbl_30754	none	STRG.25729.1,STRG.25729.2,blat.proc3825160.chain_2923,blat.proc3825160.chain_2925,blat.proc3825160.chain_2928	5	blat.proc3825160.chain_2926	1
scaffold_397	ends_in_intron	2044	2044	-	asmbl_41079	none	Trinity_GG_17006_c0_g1_i2,blat.proc3825162.chain_3434	2	STRG.30308.2	1
scaffold_19	alt_acceptor	12957723	12957724	-	asmbl_22564,asmbl_22566	none	Trinity_GG_12582_c0_g1_i6,Trinity_GG_12582_c0_g1_i7,blat.proc3825158.chain_3402,blat.proc3825158.chain_3404	4	STRG.22612.1	1
scaffold_21	alt_acceptor	1798784	1798785	+	asmbl_28364	none	STRG.23826.2,blat.proc3825176.chain_998	2	STRG.23826.1,blat.proc3825176.chain_1000,blat.proc3825176.chain_997,blat.proc3825176.chain_999	4
scaffold_21	alt_acceptor	675560	675561	-	asmbl_27341	none	STRG.23755.3	1	STRG.23755.1,STRG.23755.2,STRG.23755.4,STRG.23755.5,blat.proc3825160.chain_876,blat.proc3825160.chain_877	6
scaffold_11	starts_in_intron	4851645	4851645	-	asmbl_6641	none	blat.proc3825154.chain_2100	1	STRG.13584.1,blat.proc3825154.chain_2101	2
scaffold_13	retained_intron	8357971	8358153	+	asmbl_11125,asmbl_11126,asmbl_11127,asmbl_11128,asmbl_11129,asmbl_11130,asmbl_11131	none	STRG.16130.1,STRG.16130.3,STRG.16130.4,STRG.16130.5,Trinity_GG_26184_c0_g1_i5,Trinity_GG_26184_c1_g1_i1,blat.proc3825172.chain_914,blat.proc3825172.chain_915,blat.proc3825172.chain_917,blat.proc3825172.chain_918,blat.proc3825172.chain_919,blat.proc3825172.chain_920	12	STRG.16130.2	1
scaffold_15	retained_exon	13813532	13813573	-	asmbl_14674	none	STRG.18816.2	1	STRG.18816.1,Trinity_GG_10543_c0_g1_i1,Trinity_GG_10543_c0_g1_i2,blat.proc3825156.chain_3624,blat.proc3825156.chain_3625	5
scaffold_14	alternate_exon	1377478	1377641	-	asmbl_12876	none	STRG.16791.2	1	blat.proc3825156.chain_1623,blat.proc3825156.chain_1626	2
scaffold_1	alt_donor	16839892	16839893	-	asmbl_1019	none	STRG.1183.1,blat.proc3825148.chain_1081	2	STRG.1183.2	1
scaffold_12	starts_in_intron	14274961	14274961	+	asmbl_8086	none	Trinity_GG_25680_c0_g1_i2,blat.proc3825170.chain_3694	2	STRG.15265.1,Trinity_GG_25680_c0_g1_i1,blat.proc3825170.chain_3693	3
scaffold_5	skipped_exon	16843967	16846235	-	asmbl_44783	none	STRG.6872.1,blat.proc3825150.chain_2985	2	STRG.6872.3,blat.proc3825150.chain_2984	2
scaffold_4	spliced_intron	14086400	14086753	+	asmbl_41838	none	STRG.5028.1,Trinity_GG_20098_c0_g1_i1,blat.proc3825166.chain_1411	3	STRG.5028.2,Trinity_GG_20098_c0_g1_i2,Trinity_GG_20098_c0_g1_i3,blat.proc3825166.chain_1409,blat.proc3825166.chain_1410	5
scaffold_20	retained_intron	11695106	11695430	-	asmbl_26189	none	blat.proc3825160.chain_770	1	STRG.23682.1,blat.proc3825160.chain_772	2
scaffold_24	alt_acceptor	6798944	6798945	-	asmbl_32979,asmbl_32983,asmbl_32984	none	STRG.26730.1,blat.proc3825162.chain_89,blat.proc3825162.chain_91,blat.proc3825162.chain_93	4	STRG.26730.2,STRG.26730.3	2
scaffold_3026	spliced_intron	362	614	+	asmbl_40914	none	STRG.30816.3	1	STRG.30816.2,blat.proc3825178.chain_3715	2
scaffold_11	spliced_intron	8100073	8100172	+	asmbl_5721,asmbl_5722,asmbl_5723,asmbl_5724,asmbl_5727	none	STRG.13822.1,STRG.13822.2,STRG.13822.3,STRG.13822.4,Trinity_GG_24917_c0_g1_i1,Trinity_GG_24917_c0_g1_i3,Trinity_GG_24917_c0_g1_i5,Trinity_GG_24917_c0_g1_i6,blat.proc3825170.chain_2343,blat.proc3825170.chain_2344,blat.proc3825170.chain_2346,blat.proc3825170.chain_2347	12	Trinity_GG_24917_c0_g1_i2,Trinity_GG_24917_c0_g1_i4,blat.proc3825170.chain_2342,blat.proc3825170.chain_2345	4
scaffold_25	alternate_exon	1906447	1907100	-	asmbl_34053,asmbl_34056	none	STRG.27201.3,STRG.27201.4	2	STRG.27201.2	1
scaffold_5	retained_exon	12929850	12929874	-	asmbl_44499	none	STRG.6520.2	1	STRG.6520.1,Trinity_GG_3661_c0_g1_i1,blat.proc3825150.chain_2706	3
scaffold_24	spliced_intron	10346483	10346648	-	asmbl_33182	none	STRG.26996.1	1	STRG.26996.2	1
scaffold_5	retained_intron	10974515	10975047	+	asmbl_45718	none	Trinity_GG_20753_c1_g1_i4	1	STRG.6379.1,Trinity_GG_20753_c1_g1_i2,blat.proc3825166.chain_2527	3
scaffold_11	alt_donor	1158921	1158922	+	asmbl_5327,asmbl_5328	none	STRG.13315.1,Trinity_GG_24587_c0_g1_i1,blat.proc3825170.chain_1782,blat.proc3825170.chain_1784	4	blat.proc3825170.chain_1783	1
scaffold_11	retained_exon	3092703	3092987	+	asmbl_5400	none	STRG.13431.1	1	STRG.13431.2,blat.proc3825170.chain_1961	2
scaffold_8	ends_in_intron	12913292	12913292	-	asmbl_52245	none	STRG.10480.5,Trinity_GG_5838_c3_g1_i1,blat.proc3825152.chain_2739	3	STRG.10480.2,STRG.10480.3,STRG.10480.4	3
scaffold_16	alt_donor	14626801	14626802	+	asmbl_16695	none	STRG.19857.2	1	STRG.19857.1,Trinity_GG_28182_c0_g1_i1,Trinity_GG_28182_c0_g1_i2,blat.proc3825174.chain_735,blat.proc3825174.chain_736	5
scaffold_2	spliced_intron	7884473	7884576	-	asmbl_23291	none	STRG.2084.1,Trinity_GG_1156_c0_g1_i1,blat.proc3825148.chain_2106	3	Trinity_GG_1156_c0_g1_i2,blat.proc3825148.chain_2105	2
scaffold_4	starts_in_intron	11352273	11352273	-	asmbl_42881	none	blat.proc3825150.chain_1026	1	STRG.4836.1,blat.proc3825150.chain_1027	2
scaffold_2	alt_acceptor	19774047	19774048	+	asmbl_25285,asmbl_25286,asmbl_25288,asmbl_25289	none	STRG.2827.1,STRG.2827.2,blat.proc3825164.chain_3071,blat.proc3825164.chain_3072,blat.proc3825164.chain_3074	5	blat.proc3825164.chain_3073	1
scaffold_15	spliced_intron	1504460	1504656	-	asmbl_13957	none	STRG.17963.2,blat.proc3825156.chain_2765	2	Trinity_GG_10091_c0_g1_i1,Trinity_GG_10091_c0_g1_i4,blat.proc3825156.chain_2767,blat.proc3825156.chain_2768	4
scaffold_4	alt_acceptor	16340830	16340831	-	asmbl_43159	none	STRG.5202.2	1	STRG.5202.1	1
scaffold_20	skipped_exon	9628124	9630290	+	asmbl_26872	none	STRG.23501.4	1	STRG.23501.2	1
scaffold_6	alt_donor	878147	878148	+	asmbl_46683	none	STRG.7158.3	1	STRG.7158.2	1
scaffold_17	alt_donor	2684428	2684429	+	asmbl_18679,asmbl_18680	none	STRG.20069.1,STRG.20069.3,blat.proc3825174.chain_848,blat.proc3825174.chain_851	4	STRG.20069.2,blat.proc3825174.chain_849	2
scaffold_13	ends_in_intron	8111157	8111157	-	asmbl_9937	none	Trinity_GG_8996_c0_g1_i1,blat.proc3825156.chain_894	2	STRG.16094.1,blat.proc3825156.chain_893	2
scaffold_16	retained_intron	434057	434518	-	asmbl_16869,asmbl_16870,asmbl_16877	none	STRG.19041.3,blat.proc3825158.chain_199,blat.proc3825158.chain_202,blat.proc3825158.chain_204	4	STRG.19041.1,STRG.19041.2,blat.proc3825158.chain_198,blat.proc3825158.chain_201,blat.proc3825158.chain_203	5
scaffold_12	alt_acceptor	12454200	12454201	-	asmbl_8884	none	STRG.15152.1,blat.proc3825154.chain_3674	2	blat.proc3825154.chain_3675	1
scaffold_13	retained_exon	15637557	15637697	+	asmbl_11522	none	STRG.16607.2	1	STRG.16607.3	1
scaffold_24	retained_intron	10779344	10779463	-	asmbl_33221	none	blat.proc3825162.chain_370	1	STRG.27043.1,blat.proc3825162.chain_367,blat.proc3825162.chain_368,blat.proc3825162.chain_369	4
scaffold_5	alt_donor	14696562	14696563	+	asmbl_45958	none	STRG.6673.1,blat.proc3825166.chain_2841	2	STRG.6673.2	1
scaffold_16	retained_exon	14544286	14544409	-	asmbl_17462	none	STRG.19850.1	1	STRG.19850.2	1
scaffold_4	alt_donor	16706163	16706164	-	asmbl_43204	none	STRG.5251.1,blat.proc3825150.chain_1357	2	STRG.5251.2,STRG.5251.3,blat.proc3825150.chain_1355,blat.proc3825150.chain_1356	4
scaffold_28	ends_in_intron	4162415	4162415	-	asmbl_38197	none	Trinity_GG_16595_c0_g1_i1,blat.proc3825162.chain_2775	2	STRG.29608.1	1
scaffold_17	alternate_exon	9853222	9853252	-	asmbl_18205	none	STRG.20604.3,Trinity_GG_11598_c1_g1_i1,blat.proc3825158.chain_1644	3	STRG.20604.1	1
scaffold_20	alt_acceptor	1439314	1439315	-	asmbl_25564	none	STRG.22863.1	1	STRG.22863.2	1
scaffold_5	retained_intron	3630484	3630505	+	asmbl_45228	none	Trinity_GG_20515_c0_g1_i1	1	STRG.5836.1,STRG.5836.2	2
scaffold_3	retained_intron	10946294	10946668	-	asmbl_39127	none	blat.proc3825148.chain_3418	1	STRG.3547.1,blat.proc3825148.chain_3417,blat.proc3825148.chain_3419	3
scaffold_14	alt_donor	8414409	8414410	-	asmbl_13312	none	STRG.17280.2,blat.proc3825156.chain_2083	2	STRG.17280.1,blat.proc3825156.chain_2082	2
scaffold_5	spliced_intron	18265468	18265781	+	asmbl_46235,asmbl_46240,asmbl_46243	none	STRG.6968.1,blat.proc3825166.chain_3185,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	4	STRG.6968.2,STRG.6968.5,blat.proc3825166.chain_3184,blat.proc3825166.chain_3186,blat.proc3825166.chain_3188	5
scaffold_1	alt_acceptor	3165473	3165474	+	asmbl_1573,asmbl_1574	none	STRG.199.1,STRG.199.3,Trinity_GG_17441_c0_g1_i3,blat.proc3825164.chain_290	4	STRG.199.2,Trinity_GG_17441_c0_g1_i2,blat.proc3825164.chain_289	3
scaffold_14	retained_intron	7215812	7216426	+	asmbl_12136	none	blat.proc3825172.chain_1869	1	STRG.17156.1,Trinity_GG_26721_c0_g1_i3,blat.proc3825172.chain_1868,blat.proc3825172.chain_1870,blat.proc3825172.chain_1871	5
scaffold_3	retained_intron	12627468	12627566	-	asmbl_39217	none	STRG.3656.2,blat.proc3825148.chain_3459	2	STRG.3656.1,blat.proc3825148.chain_3460	2
scaffold_28	alt_acceptor	232203	232204	+	asmbl_37258	none	STRG.29253.2	1	STRG.29253.1,blat.proc3825178.chain_2480,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483,blat.proc3825178.chain_2485	5
scaffold_13	starts_in_intron	393989	393989	-	asmbl_9336	none	Trinity_GG_8688_c0_g1_i12,blat.proc3825156.chain_365	2	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,STRG.15444.5,STRG.15444.6,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366	26
scaffold_18	ends_in_intron	9663521	9663521	-	asmbl_20077	none	blat.proc3825158.chain_2475	1	STRG.21575.1,Trinity_GG_12057_c0_g1_i2,blat.proc3825158.chain_2474	3
scaffold_18	starts_in_intron	2081939	2081939	+	asmbl_20403	none	Trinity_GG_28919_c0_g1_i3,blat.proc3825174.chain_2029	2	STRG.21110.1,STRG.21110.2,STRG.21110.3,blat.proc3825174.chain_2026,blat.proc3825174.chain_2027,blat.proc3825174.chain_2028	6
scaffold_17	alt_acceptor	6798467	6798468	+	asmbl_18873	none	STRG.20333.1,blat.proc3825174.chain_1165	2	STRG.20333.2,blat.proc3825174.chain_1167	2
scaffold_285	starts_in_intron	1422	1422	+	asmbl_38622	none	STRG.30262.2	1	STRG.30262.1,blat.proc3825178.chain_3357,blat.proc3825178.chain_3358	3
scaffold_4	retained_exon	17129759	17129886	-	asmbl_43260	none	STRG.5313.1,Trinity_GG_2969_c0_g1_i2	2	STRG.5313.2,blat.proc3825150.chain_1491	2
scaffold_19	alt_acceptor	3189254	3189255	-	asmbl_22091,asmbl_22092	none	STRG.22011.1,STRG.22011.3,blat.proc3825158.chain_2843,blat.proc3825158.chain_2844	4	STRG.22011.4,blat.proc3825158.chain_2845	2
scaffold_3	alt_acceptor	1767455	1767456	+	asmbl_39880	none	STRG.2994.4	1	STRG.2994.1	1
scaffold_7	starts_in_intron	1700370	1700370	+	asmbl_49624	none	Trinity_GG_22079_c0_g1_i1,blat.proc3825168.chain_1161	2	STRG.8656.1,Trinity_GG_22079_c0_g1_i2,blat.proc3825168.chain_1162	3
scaffold_1	spliced_intron	14189912	14190481	-	asmbl_866,asmbl_871,asmbl_872	none	STRG.1005.1,blat.proc3825148.chain_968,blat.proc3825148.chain_969,blat.proc3825148.chain_971	4	Trinity_GG_515_c0_g2_i1,blat.proc3825148.chain_974	2
scaffold_12	spliced_intron	12349498	12349762	+	asmbl_7991,asmbl_7994	none	STRG.15140.1,Trinity_GG_25652_c0_g1_i2,blat.proc3825170.chain_3644,blat.proc3825170.chain_3645	4	Trinity_GG_25652_c0_g1_i3,blat.proc3825170.chain_3646	2
scaffold_8	retained_intron	7805215	7805311	-	asmbl_51926,asmbl_51928	none	blat.proc3825152.chain_2313,blat.proc3825152.chain_2318	2	STRG.10100.1,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316	4
scaffold_4	ends_in_intron	19605161	19605161	-	asmbl_43472	none	STRG.5550.3	1	STRG.5550.1,STRG.5550.2	2
scaffold_6	alt_acceptor	8643353	8643354	+	asmbl_47168	none	STRG.7754.1,blat.proc3825168.chain_190	2	STRG.7754.2,STRG.7754.3,blat.proc3825168.chain_189	3
scaffold_1	spliced_intron	6953430	6953629	+	asmbl_1862	none	STRG.492.1	1	STRG.492.2,Trinity_GG_17619_c0_g1_i2,blat.proc3825164.chain_621	3
scaffold_4	spliced_intron	4104938	4105082	+	asmbl_41232	none	STRG.4316.2	1	STRG.4316.1	1
scaffold_4	retained_exon	5739522	5739541	-	asmbl_42637	none	STRG.4470.2	1	STRG.4470.1,blat.proc3825150.chain_713	2
scaffold_20	retained_intron	631183	631334	-	asmbl_25504	none	blat.proc3825158.chain_3611	1	STRG.22765.1,blat.proc3825158.chain_3610	2
scaffold_21	starts_in_intron	7273269	7273269	+	asmbl_28717	none	blat.proc3825176.chain_1455	1	STRG.24250.1,blat.proc3825176.chain_1456	2
scaffold_1	retained_exon	3494781	3494810	-	asmbl_146,asmbl_147,asmbl_148,asmbl_150,asmbl_151,asmbl_152,asmbl_155	none	STRG.221.1,STRG.221.2,STRG.221.3,STRG.221.4,blat.proc3825148.chain_213,blat.proc3825148.chain_215,blat.proc3825148.chain_216,blat.proc3825148.chain_217,blat.proc3825148.chain_218,blat.proc3825148.chain_220	10	blat.proc3825148.chain_214,blat.proc3825148.chain_219,blat.proc3825148.chain_221	3
scaffold_1	retained_intron	7773078	7773240	+	asmbl_1916	none	STRG.537.2,blat.proc3825164.chain_696	2	blat.proc3825164.chain_694,blat.proc3825164.chain_695	2
scaffold_1	starts_in_intron	19041067	19041067	+	asmbl_2578,asmbl_2581	none	STRG.1335.5,blat.proc3825164.chain_1480	2	STRG.1335.1	1
scaffold_4	retained_intron	12690853	12690998	-	asmbl_42953	none	STRG.4910.4,blat.proc3825150.chain_1021	2	STRG.4910.1,STRG.4910.3,blat.proc3825150.chain_1018,blat.proc3825150.chain_1019	4
scaffold_21	spliced_intron	7286601	7286692	-	asmbl_27789,asmbl_27790	none	STRG.24249.1,STRG.24249.3,Trinity_GG_13530_c0_g1_i1,Trinity_GG_13530_c0_g1_i2,blat.proc3825160.chain_1388,blat.proc3825160.chain_1389	6	STRG.24249.2	1
scaffold_1	alt_acceptor	11572747	11572748	-	asmbl_633	none	STRG.767.2	1	STRG.767.1,blat.proc3825148.chain_743,blat.proc3825148.chain_747	3
scaffold_1	alt_donor	19006561	19006562	+	asmbl_2573	none	STRG.1324.2	1	STRG.1324.3	1
scaffold_2	retained_intron	6520144	6520227	+	asmbl_24476	none	Trinity_GG_18449_c0_g1_i1,blat.proc3825164.chain_2142	2	STRG.2022.1,STRG.2022.2,STRG.2022.3,STRG.2022.4,STRG.2022.5,Trinity_GG_18449_c0_g1_i2,blat.proc3825164.chain_2143	7
scaffold_21	alt_donor	7485717	7485718	-	asmbl_27822	none	STRG.24279.1,blat.proc3825160.chain_1431	2	STRG.24279.2	1
scaffold_21	starts_in_intron	7809949	7809949	-	asmbl_27854	none	blat.proc3825160.chain_1428	1	STRG.24317.1,STRG.24317.2,STRG.24317.3,blat.proc3825160.chain_1426,blat.proc3825160.chain_1427	5
scaffold_7	spliced_intron	1235216	1235301	+	asmbl_49592	none	blat.proc3825168.chain_1068	1	STRG.8637.4,blat.proc3825168.chain_1072	2
scaffold_4	retained_intron	4095323	4095811	+	asmbl_41220,asmbl_41227,asmbl_41229	none	STRG.4315.2,blat.proc3825166.chain_705,blat.proc3825166.chain_709	3	STRG.4315.4,blat.proc3825166.chain_703	2
scaffold_11	spliced_intron	1809111	1809270	-	asmbl_6448	none	blat.proc3825154.chain_1926	1	STRG.13348.1	1
scaffold_10	retained_intron	8331786	8331992	-	asmbl_4583	none	blat.proc3825154.chain_1190	1	blat.proc3825154.chain_1182	1
scaffold_4	ends_in_intron	4679774	4679774	+	asmbl_41293	none	Trinity_GG_19743_c0_g1_i2,blat.proc3825166.chain_825	2	STRG.4368.1,blat.proc3825166.chain_823	2
scaffold_15	ends_in_intron	11492639	11492639	-	asmbl_14517	none	blat.proc3825156.chain_3490	1	STRG.18613.1,STRG.18613.2,blat.proc3825156.chain_3487	3
scaffold_13	ends_in_intron	6606635	6606635	+	asmbl_10945	none	STRG.15951.3,Trinity_GG_26063_c0_g1_i2,blat.proc3825172.chain_674	3	STRG.15951.1,STRG.15951.2,STRG.15951.4,Trinity_GG_26063_c0_g1_i3,Trinity_GG_26063_c0_g1_i4,blat.proc3825172.chain_675,blat.proc3825172.chain_676,blat.proc3825172.chain_677	8
scaffold_5	skipped_exon	5051252	5053991	+	asmbl_45333,asmbl_45335	none	STRG.5959.2,STRG.5959.3,blat.proc3825166.chain_2195	3	STRG.5959.1,STRG.5959.4,blat.proc3825166.chain_2197	3
scaffold_13	spliced_intron	16437382	16437484	+	asmbl_11582	none	blat.proc3825172.chain_1427	1	Trinity_GG_26477_c0_g1_i1,blat.proc3825172.chain_1424	2
scaffold_11	alternate_exon	3553093	3553141	+	asmbl_5453	none	blat.proc3825170.chain_2028	1	STRG.13482.1,blat.proc3825170.chain_2027,blat.proc3825170.chain_2029	3
scaffold_1	retained_intron	9306095	9306201	+	asmbl_1981	none	blat.proc3825164.chain_748	1	STRG.628.1,blat.proc3825164.chain_746,blat.proc3825164.chain_747	3
scaffold_9	starts_in_intron	16744771	16744771	+	asmbl_54623	none	Trinity_GG_23906_c0_g1_i1,blat.proc3825170.chain_620	2	STRG.11820.1,Trinity_GG_23906_c0_g1_i2,blat.proc3825170.chain_619	3
scaffold_28	spliced_intron	7438245	7438344	+	asmbl_37680	none	STRG.29823.1,blat.proc3825178.chain_2939	2	STRG.29823.2,blat.proc3825178.chain_2940	2
scaffold_18	alt_donor	3605922	3605923	+	asmbl_20459,asmbl_20461	none	STRG.21178.1,STRG.21178.2,blat.proc3825174.chain_2119	3	STRG.21178.3	1
scaffold_20	starts_in_intron	9106004	9106004	+	asmbl_26829	none	Trinity_GG_30271_c0_g1_i3,blat.proc3825176.chain_613	2	STRG.23455.1,STRG.23455.2,Trinity_GG_30271_c0_g1_i1,Trinity_GG_30271_c0_g1_i2,blat.proc3825176.chain_612,blat.proc3825176.chain_615,blat.proc3825176.chain_616	7
scaffold_5	retained_exon	5051789	5051848	+	asmbl_45332,asmbl_45334	none	STRG.5959.1,STRG.5959.4,blat.proc3825166.chain_2197	3	STRG.5959.2,STRG.5959.3,blat.proc3825166.chain_2195	3
scaffold_27	skipped_exon	5015909	5017714	+	asmbl_36334	none	STRG.28933.3,Trinity_GG_33329_c0_g1_i3,blat.proc3825178.chain_2138	3	STRG.28933.1,STRG.28933.2,blat.proc3825178.chain_2137,blat.proc3825178.chain_2139	4
scaffold_9	starts_in_intron	3805575	3805575	+	asmbl_53924	none	Trinity_GG_23433_c0_g1_i1	1	STRG.10999.2	1
scaffold_16	ends_in_intron	290892	290892	+	asmbl_16021	none	blat.proc3825172.chain_3688	1	STRG.19019.1,STRG.19019.2,Trinity_GG_27744_c0_g1_i2,blat.proc3825172.chain_3687,blat.proc3825172.chain_3689,blat.proc3825172.chain_3691	6
scaffold_18	alt_acceptor	13662474	13662475	+	asmbl_21035	none	STRG.21806.2	1	STRG.21806.1,blat.proc3825174.chain_2827	2
scaffold_17	retained_intron	9095446	9095758	-	asmbl_18155	none	blat.proc3825158.chain_1538	1	STRG.20540.1,blat.proc3825158.chain_1537	2
scaffold_12	retained_intron	4204687	4205332	+	asmbl_7586	none	STRG.14600.1,Trinity_GG_25384_c0_g1_i2,blat.proc3825170.chain_3172	3	STRG.14600.3	1
scaffold_13	ends_in_intron	13709411	13709411	-	asmbl_10158	none	blat.proc3825156.chain_1295	1	blat.proc3825156.chain_1297	1
scaffold_25	ends_in_intron	4536466	4536466	-	asmbl_34208	none	Trinity_GG_15331_c0_g1_i2,blat.proc3825162.chain_714	2	STRG.27391.1,STRG.27391.2,Trinity_GG_15331_c0_g1_i3,Trinity_GG_15331_c0_g1_i4,blat.proc3825162.chain_713,blat.proc3825162.chain_715	6
scaffold_2	skipped_exon	9816705	9818285	-	asmbl_23390	none	STRG.2196.1,blat.proc3825148.chain_2228	2	STRG.2196.2,blat.proc3825148.chain_2227	2
scaffold_18	alt_donor	13634935	13634936	-	asmbl_20179	none	blat.proc3825158.chain_2650	1	STRG.21796.1,blat.proc3825158.chain_2648,blat.proc3825158.chain_2649	3
scaffold_15	ends_in_intron	9817330	9817330	+	asmbl_15419	none	blat.proc3825172.chain_3083	1	STRG.18497.1,STRG.18497.2,STRG.18497.3,blat.proc3825172.chain_3081,blat.proc3825172.chain_3082	5
scaffold_14	spliced_intron	1590384	1590520	-	asmbl_12899	none	STRG.16799.4	1	blat.proc3825156.chain_1563	1
scaffold_18	alt_donor	814926	814927	+	asmbl_20320,asmbl_20323	none	STRG.21006.1,blat.proc3825174.chain_1947,blat.proc3825174.chain_1948	3	STRG.21006.2,blat.proc3825174.chain_1950	2
scaffold_15	spliced_intron	8828920	8829390	+	asmbl_15357,asmbl_15358	none	STRG.18428.1,blat.proc3825172.chain_3102,blat.proc3825172.chain_3103,blat.proc3825172.chain_3105	4	Trinity_GG_27426_c0_g1_i1,blat.proc3825172.chain_3104	2
scaffold_14	skipped_exon	3551338	3552180	-	asmbl_13024	none	STRG.16946.3	1	STRG.16946.1,STRG.16946.2,blat.proc3825156.chain_1729,blat.proc3825156.chain_1730	4
scaffold_10	alt_donor	46074	46075	-	asmbl_3914	none	STRG.11902.1	1	STRG.11902.2,Trinity_GG_6611_c0_g1_i1,blat.proc3825154.chain_418	3
scaffold_7	spliced_intron	8296258	8297094	-	asmbl_50995	none	STRG.9066.1,blat.proc3825152.chain_1457	2	Trinity_GG_5116_c0_g1_i4,blat.proc3825152.chain_1455	2
scaffold_1	alt_donor	5955473	5955474	+	asmbl_1801	none	STRG.396.1,blat.proc3825164.chain_552	2	STRG.396.2,STRG.396.3	2
scaffold_21	alternate_exon	8133906	8133935	-	asmbl_27891	none	STRG.24349.5,blat.proc3825160.chain_1508	2	blat.proc3825160.chain_1509,blat.proc3825160.chain_1511,blat.proc3825160.chain_1512	3
scaffold_10	spliced_intron	3426012	3426415	+	asmbl_3042	none	STRG.12174.1,blat.proc3825170.chain_835	2	Trinity_GG_24037_c0_g1_i2,blat.proc3825170.chain_837	2
scaffold_340	spliced_intron	3284	3408	+	asmbl_41014,asmbl_41015	none	STRG.30295.1,STRG.30295.2	2	STRG.30295.3,STRG.30295.4,STRG.30295.5,Trinity_GG_34083_c0_g1_i8,Trinity_GG_7034_c0_g1_i1,blat.proc3825154.chain_1179,blat.proc3825178.chain_3395	7
scaffold_22	spliced_intron	4223113	4223394	-	asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29218,asmbl_29222,asmbl_29225,asmbl_29226	none	STRG.24845.1,STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2074,blat.proc3825160.chain_2076,blat.proc3825160.chain_2078,blat.proc3825160.chain_2079	9	blat.proc3825160.chain_2069,blat.proc3825160.chain_2075	2
scaffold_19	alternate_exon	6831851	6831939	-	asmbl_22230	none	STRG.22199.2	1	STRG.22199.1	1
scaffold_11	retained_exon	1143917	1145017	+	asmbl_5321,asmbl_5323	none	STRG.13310.1,blat.proc3825170.chain_1852,blat.proc3825170.chain_1853	3	STRG.13310.2	1
scaffold_1	spliced_intron	14305214	14305639	+	asmbl_2376,asmbl_2377	none	STRG.1021.1,Trinity_GG_17936_c0_g1_i4,blat.proc3825164.chain_1213,blat.proc3825164.chain_1214	4	blat.proc3825164.chain_1215	1
scaffold_17	alt_acceptor	9034623	9034624	-	asmbl_18141,asmbl_18142,asmbl_18143	none	STRG.20532.1,STRG.20532.5,STRG.20532.6	3	STRG.20532.3,STRG.20532.4	2
scaffold_17	retained_exon	9532392	9532451	+	asmbl_19102,asmbl_19103,asmbl_19107	none	STRG.20578.1,STRG.20578.2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1403	6	STRG.20578.3,Trinity_GG_28562_c0_g1_i2,blat.proc3825174.chain_1395	3
scaffold_20	alternate_exon	7808342	7810088	-	asmbl_25923	none	STRG.23331.2,blat.proc3825160.chain_454	2	STRG.23331.1,blat.proc3825160.chain_453	2
scaffold_25	alternate_exon	8704268	8704628	+	asmbl_33751,asmbl_33752,asmbl_33756,asmbl_33757	none	STRG.27702.1,STRG.27702.2,blat.proc3825178.chain_762,blat.proc3825178.chain_768,blat.proc3825178.chain_769,blat.proc3825178.chain_770	6	STRG.27702.3,blat.proc3825178.chain_771	2
scaffold_4	starts_in_intron	8251380	8251380	+	asmbl_41542	none	Trinity_GG_19901_c0_g1_i1,blat.proc3825166.chain_1109	2	STRG.4650.1,blat.proc3825166.chain_1110	2
scaffold_15	spliced_intron	13327077	13327471	+	asmbl_15626	none	STRG.18771.1	1	Trinity_GG_27599_c0_g1_i11,Trinity_GG_27599_c0_g1_i13,Trinity_GG_27599_c0_g1_i2,Trinity_GG_27599_c0_g1_i5,blat.proc3825172.chain_3383,blat.proc3825172.chain_3384,blat.proc3825172.chain_3385,blat.proc3825172.chain_3386,blat.proc3825172.chain_3387,blat.proc3825172.chain_3388,blat.proc3825172.chain_3389,blat.proc3825172.chain_3390,blat.proc3825172.chain_3392	13
scaffold_11	starts_in_intron	8478185	8478185	+	asmbl_5787	none	Trinity_GG_24888_c0_g1_i1,blat.proc3825170.chain_2290	2	STRG.13864.2,Trinity_GG_24888_c0_g1_i4,blat.proc3825170.chain_2292	3
scaffold_12	spliced_intron	9855571	9855735	-	asmbl_8698	none	blat.proc3825154.chain_3463	1	STRG.14956.1,blat.proc3825154.chain_3462	2
scaffold_23	spliced_intron	10990921	10990994	-	asmbl_31185	none	STRG.26306.1,blat.proc3825160.chain_3398	2	blat.proc3825160.chain_3397	1
scaffold_4	retained_intron	13076283	13076428	+	asmbl_41777	none	blat.proc3825166.chain_1380	1	STRG.4947.1,STRG.4947.2,blat.proc3825166.chain_1379	3
scaffold_12	alt_acceptor	16525654	16525655	-	asmbl_9128,asmbl_9131	none	STRG.15414.1,STRG.15414.2,Trinity_GG_8632_c0_g1_i2,blat.proc3825156.chain_237	4	STRG.15414.3	1
scaffold_7	alt_acceptor	9909180	9909181	-	asmbl_51099	none	STRG.9200.2	1	STRG.9200.1,blat.proc3825152.chain_1550	2
scaffold_10	alternate_exon	13473285	13473562	-	asmbl_4890	none	STRG.12943.3	1	STRG.12943.2,blat.proc3825154.chain_1532,blat.proc3825154.chain_1533	3
scaffold_19	alt_acceptor	6740770	6740771	+	asmbl_21437	none	STRG.22187.2,Trinity_GG_29563_c0_g1_i1	2	STRG.22187.1	1
scaffold_24	spliced_intron	6310450	6310978	+	asmbl_32302,asmbl_32304,asmbl_32305	none	STRG.26696.1,STRG.26696.2,blat.proc3825176.chain_3580,blat.proc3825176.chain_3581	4	blat.proc3825176.chain_3579	1
scaffold_19	alt_donor	7123941	7123942	+	asmbl_21448	none	STRG.22210.1,blat.proc3825174.chain_3227	2	STRG.22210.2,blat.proc3825174.chain_3226	2
scaffold_2	alt_donor	17923207	17923208	+	asmbl_25204	none	blat.proc3825164.chain_2955	1	STRG.2680.1,STRG.2680.2,blat.proc3825164.chain_2954	3
scaffold_9	spliced_intron	5757730	5758224	-	asmbl_55028,asmbl_55029	none	STRG.11147.1,STRG.11147.3,blat.proc3825152.chain_3396	3	STRG.11147.4,Trinity_GG_6190_c0_g1_i4,Trinity_GG_6190_c0_g1_i5,Trinity_GG_6190_c0_g1_i8,blat.proc3825152.chain_3395,blat.proc3825152.chain_3400	6
scaffold_14	alternate_exon	15044929	15045374	-	asmbl_13704	none	STRG.17735.2	1	STRG.17735.1	1
scaffold_9	alt_acceptor	3411468	3411469	-	asmbl_54900,asmbl_54905	none	STRG.10955.1,blat.proc3825152.chain_3206	2	STRG.10955.3,blat.proc3825152.chain_3203,blat.proc3825152.chain_3205	3
scaffold_13	spliced_intron	2337673	2338404	+	asmbl_10607	none	STRG.15564.9	1	STRG.15564.10,STRG.15564.8,Trinity_GG_25824_c1_g1_i1,blat.proc3825172.chain_233	4
scaffold_19	alternate_exon	11719499	11722836	-	asmbl_22432	none	STRG.22502.2,blat.proc3825158.chain_3271	2	blat.proc3825158.chain_3272	1
scaffold_9	alternate_exon	16354180	16354239	-	asmbl_55569	none	STRG.11789.1,Trinity_GG_6509_c0_g1_i1,blat.proc3825154.chain_241	3	STRG.11789.2	1
scaffold_25	starts_in_intron	5831308	5831308	-	asmbl_34289,asmbl_34293	none	STRG.27479.3,blat.proc3825162.chain_879	2	STRG.27479.1,STRG.27479.2,STRG.27479.4,blat.proc3825162.chain_876,blat.proc3825162.chain_878,blat.proc3825162.chain_880	6
scaffold_14	skipped_exon	6368162	6369799	+	asmbl_12075	none	STRG.17085.1	1	STRG.17085.2,STRG.17085.3,blat.proc3825172.chain_1854,blat.proc3825172.chain_1855,blat.proc3825172.chain_1856	5
scaffold_7	spliced_intron	9810110	9810191	-	asmbl_51075	none	STRG.9176.2	1	STRG.9176.1	1
scaffold_14	spliced_intron	13897914	13898395	+	asmbl_12509,asmbl_12510,asmbl_12512,asmbl_12513,asmbl_12514	none	STRG.17673.1,STRG.17673.2,STRG.17673.3,STRG.17673.4,blat.proc3825172.chain_2390,blat.proc3825172.chain_2392	6	blat.proc3825172.chain_2394,blat.proc3825172.chain_2396	2
scaffold_13	retained_exon	6804014	6804145	+	asmbl_10975,asmbl_10979	none	STRG.15970.1,blat.proc3825172.chain_721,blat.proc3825172.chain_723	3	STRG.15970.2,blat.proc3825172.chain_720	2
scaffold_22	spliced_intron	224379	224758	-	asmbl_29077	none	STRG.24683.5	1	STRG.24683.2,blat.proc3825160.chain_1904,blat.proc3825160.chain_1907	3
scaffold_14	alt_donor	4199143	4199144	-	asmbl_13038	none	STRG.16977.1,blat.proc3825156.chain_1745	2	STRG.16977.2	1
scaffold_20	skipped_exon	6715123	6717153	+	asmbl_26669	none	STRG.23248.2	1	blat.proc3825176.chain_404	1
scaffold_12	alt_acceptor	5659356	5659357	+	asmbl_7666	none	STRG.14721.1,blat.proc3825170.chain_3242	2	STRG.14721.2	1
scaffold_5	alt_donor	5591216	5591217	+	asmbl_45348	none	STRG.5980.1,blat.proc3825166.chain_2113	2	STRG.5980.2,blat.proc3825166.chain_2114	2
scaffold_9	spliced_intron	15589185	15589902	+	asmbl_54580	none	blat.proc3825170.chain_530	1	STRG.11750.2,blat.proc3825170.chain_533	2
scaffold_25	spliced_intron	9337552	9337746	+	asmbl_33808,asmbl_33809,asmbl_33811	none	STRG.27762.1,blat.proc3825178.chain_878,blat.proc3825178.chain_879,blat.proc3825178.chain_881	4	blat.proc3825178.chain_880	1
scaffold_17	ends_in_intron	5084212	5084212	-	asmbl_17912	none	STRG.20236.2,blat.proc3825158.chain_1282	2	STRG.20236.1	1
scaffold_8	spliced_intron	18163021	18163268	-	asmbl_52513,asmbl_52514,asmbl_52515	none	STRG.10730.1,Trinity_GG_5967_c0_g1_i3,Trinity_GG_5967_c0_g1_i4,Trinity_GG_5967_c0_g1_i5,blat.proc3825152.chain_2998,blat.proc3825152.chain_2999,blat.proc3825152.chain_3001	7	blat.proc3825152.chain_2997,blat.proc3825152.chain_3000	2
scaffold_11	starts_in_intron	8102877	8102877	+	asmbl_5730	none	Trinity_GG_24917_c1_g1_i8,blat.proc3825170.chain_2353	2	STRG.13823.1,STRG.13823.2,STRG.13823.3,blat.proc3825170.chain_2349,blat.proc3825170.chain_2351,blat.proc3825170.chain_2352	6
scaffold_13	starts_in_intron	6383554	6383554	-	asmbl_9782	none	blat.proc3825156.chain_855	1	STRG.15927.1,Trinity_GG_8978_c1_g1_i1,blat.proc3825156.chain_854,blat.proc3825156.chain_856	4
scaffold_21	starts_in_intron	3169441	3169441	+	asmbl_28460	none	STRG.23959.7,blat.proc3825176.chain_1144	2	STRG.23959.1,STRG.23959.2,STRG.23959.4,blat.proc3825176.chain_1132,blat.proc3825176.chain_1135,blat.proc3825176.chain_1137,blat.proc3825176.chain_1139,blat.proc3825176.chain_1141,blat.proc3825176.chain_1142	9
scaffold_24	retained_intron	10604358	10604689	+	asmbl_32580	none	STRG.27028.3,blat.proc3825178.chain_220	2	STRG.27028.1,STRG.27028.2,Trinity_GG_32236_c0_g1_i3,Trinity_GG_32236_c0_g1_i5,blat.proc3825178.chain_218,blat.proc3825178.chain_219,blat.proc3825178.chain_221,blat.proc3825178.chain_222	8
scaffold_15	ends_in_intron	15184724	15184724	+	asmbl_15733	none	blat.proc3825172.chain_3521	1	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3519,blat.proc3825172.chain_3520,blat.proc3825172.chain_3522,blat.proc3825172.chain_3523,blat.proc3825172.chain_3524,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3529,blat.proc3825172.chain_3530,blat.proc3825172.chain_3531,blat.proc3825172.chain_3532,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535,blat.proc3825172.chain_3536	19
scaffold_9	starts_in_intron	13305594	13305594	-	asmbl_55431	none	Trinity_GG_6406_c0_g1_i2	1	STRG.11631.1,STRG.11631.2,blat.proc3825154.chain_72	3
scaffold_15	starts_in_intron	8589730	8589730	+	asmbl_15337	none	Trinity_GG_27401_c0_g1_i3,blat.proc3825172.chain_3063	2	STRG.18405.2	1
scaffold_4	alternate_exon	16314740	16315361	+	asmbl_41963	none	STRG.5200.1	1	STRG.5200.3,blat.proc3825166.chain_1502	2
scaffold_9	alt_donor	13297187	13297188	-	asmbl_55423,asmbl_55424	none	STRG.11628.1,STRG.11628.3	2	STRG.11628.2,STRG.11628.5	2
scaffold_8	starts_in_intron	9868559	9868559	+	asmbl_53125	none	blat.proc3825168.chain_2815	1	STRG.10233.2,STRG.10233.5,blat.proc3825168.chain_2817,blat.proc3825168.chain_2818,blat.proc3825168.chain_2820	5
scaffold_25	retained_intron	6525745	6525968	-	asmbl_34365	none	STRG.27535.1	1	blat.proc3825162.chain_927	1
scaffold_20	retained_intron	5115892	5116021	+	asmbl_26603	none	Trinity_GG_30078_c0_g1_i7,blat.proc3825176.chain_326	2	STRG.23147.1,Trinity_GG_30078_c0_g1_i5,blat.proc3825176.chain_325	3
scaffold_3	starts_in_intron	10513087	10513087	-	asmbl_39089	none	Trinity_GG_1877_c0_g1_i2,blat.proc3825148.chain_3359	2	STRG.3489.1,blat.proc3825148.chain_3360	2
scaffold_11	starts_in_intron	8042725	8042725	-	asmbl_6821	none	blat.proc3825154.chain_2385	1	STRG.13810.1,STRG.13810.2,blat.proc3825154.chain_2386	3
scaffold_21	alternate_exon	9866823	9867235	-	asmbl_27977	none	STRG.24445.3	1	STRG.24445.2	1
scaffold_126	alt_acceptor	3318	3319	+	asmbl_9276	none	STRG.30164.2	1	STRG.30164.1,blat.proc3825178.chain_3284	2
scaffold_5	spliced_intron	10135753	10135836	+	asmbl_45658	none	STRG.6311.1,blat.proc3825166.chain_2503,blat.proc3825166.chain_2504	3	blat.proc3825166.chain_2505	1
scaffold_5	alt_donor	18255903	18255904	+	asmbl_46228	none	Trinity_GG_21150_c0_g1_i4,blat.proc3825166.chain_3198	2	STRG.6961.1,Trinity_GG_21150_c0_g1_i1,blat.proc3825166.chain_3197	3
scaffold_2	alt_acceptor	14480289	14480290	-	asmbl_23606	none	STRG.2448.2	1	STRG.2448.1,blat.proc3825148.chain_2429	2
scaffold_28	retained_intron	7305588	7306228	-	asmbl_38393	none	STRG.29803.1	1	STRG.29803.2,Trinity_GG_16722_c0_g1_i1,blat.proc3825162.chain_2987	3
scaffold_11	alt_acceptor	174642	174643	+	asmbl_5269	none	STRG.13247.2	1	STRG.13247.1,Trinity_GG_24602_c0_g1_i3,blat.proc3825170.chain_1809,blat.proc3825170.chain_1810,blat.proc3825170.chain_1811,blat.proc3825170.chain_1812,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	8
scaffold_26	retained_intron	5501908	5502171	+	asmbl_35007	none	STRG.28260.1,blat.proc3825178.chain_1343	2	STRG.28260.2,blat.proc3825178.chain_1345	2
scaffold_1	retained_exon	9312965	9313033	+	asmbl_1982	none	STRG.627.1,blat.proc3825164.chain_774	2	STRG.627.2	1
scaffold_27	alt_acceptor	2822746	2822747	-	asmbl_36863	none	blat.proc3825162.chain_2013	1	STRG.28765.1,blat.proc3825162.chain_2010,blat.proc3825162.chain_2011,blat.proc3825162.chain_2012	4
scaffold_24	ends_in_intron	446383	446383	+	asmbl_32020	none	blat.proc3825176.chain_3328	1	STRG.26337.1,Trinity_GG_31878_c0_g1_i2,blat.proc3825176.chain_3325,blat.proc3825176.chain_3326	4
scaffold_19	alternate_exon	12972818	12972868	-	asmbl_22577	none	Trinity_GG_12569_c0_g1_i1,blat.proc3825158.chain_3362	2	STRG.22618.2,Trinity_GG_12569_c0_g1_i6,blat.proc3825158.chain_3364	3
scaffold_7	starts_in_intron	1692886	1692886	+	asmbl_49621	none	Trinity_GG_22071_c0_g1_i1,blat.proc3825168.chain_1151	2	STRG.8651.1,Trinity_GG_22071_c0_g1_i2,blat.proc3825168.chain_1150	3
scaffold_20	alternate_exon	1134460	1138915	-	asmbl_25545	none	STRG.22832.2,Trinity_GG_12739_c0_g1_i1,blat.proc3825158.chain_3637,blat.proc3825158.chain_3683	4	STRG.22832.1	1
scaffold_3	spliced_intron	4257051	4257133	+	asmbl_39985	none	STRG.3119.2	1	STRG.3119.1,Trinity_GG_19075_c0_g1_i1	2
scaffold_8	starts_in_intron	10240592	10240592	+	asmbl_53166	none	STRG.10282.4,blat.proc3825168.chain_2734	2	STRG.10282.1,STRG.10282.2,STRG.10282.3,blat.proc3825168.chain_2729,blat.proc3825168.chain_2730,blat.proc3825168.chain_2731,blat.proc3825168.chain_2733	7
scaffold_24	alt_donor	278020	278021	-	asmbl_32702	none	STRG.26327.2	1	STRG.26327.1,Trinity_GG_14724_c0_g1_i1,blat.proc3825160.chain_3465	3
scaffold_20	spliced_intron	9825448	9825623	-	asmbl_26055,asmbl_26057,asmbl_26058	none	STRG.23529.1,blat.proc3825160.chain_613,blat.proc3825160.chain_614,blat.proc3825160.chain_615	4	STRG.23529.2,blat.proc3825160.chain_616	2
scaffold_8	spliced_intron	7483397	7483530	-	asmbl_51911	none	STRG.10078.1,blat.proc3825152.chain_2259	2	blat.proc3825152.chain_2256	1
scaffold_2	alt_acceptor	11611256	11611257	+	asmbl_24761,asmbl_24765	none	STRG.2268.3,blat.proc3825164.chain_2377	2	STRG.2268.2,blat.proc3825164.chain_2378,blat.proc3825164.chain_2380	3
scaffold_21	alternate_exon	416663	416756	-	asmbl_27318	none	STRG.23735.1,Trinity_GG_13224_c0_g1_i2,blat.proc3825160.chain_846	3	STRG.23735.2,Trinity_GG_13224_c0_g1_i1,blat.proc3825160.chain_847	3
scaffold_16	alt_acceptor	6232211	6232212	-	asmbl_17155	none	STRG.19360.1	1	STRG.19360.2	1
scaffold_1	alt_donor	7441592	7441593	-	asmbl_439	none	STRG.525.2	1	STRG.525.1,blat.proc3825148.chain_500	2
scaffold_17	retained_exon	2354832	2357750	+	asmbl_18637,asmbl_18643	none	STRG.20030.1,blat.proc3825174.chain_907,blat.proc3825174.chain_909	3	STRG.20030.7	1
scaffold_3	alt_donor	4882488	4882489	-	asmbl_38820	none	STRG.3181.1,blat.proc3825148.chain_2959	2	STRG.3181.2	1
scaffold_11	spliced_intron	13593399	13593726	-	asmbl_7148,asmbl_7149	none	blat.proc3825154.chain_2763,blat.proc3825154.chain_2765	2	STRG.14216.1,Trinity_GG_7952_c0_g1_i2,blat.proc3825154.chain_2764	3
scaffold_21	ends_in_intron	8518701	8518701	-	asmbl_27926	none	Trinity_GG_13612_c0_g1_i2,blat.proc3825160.chain_1558	2	STRG.24377.2,STRG.24377.3,blat.proc3825160.chain_1556,blat.proc3825160.chain_1559	4
scaffold_11	alt_acceptor	8790350	8790351	-	asmbl_6876	none	STRG.13904.2	1	STRG.13904.1,blat.proc3825170.chain_2482,blat.proc3825170.chain_2483,blat.proc3825170.chain_2484	4
scaffold_3	alt_donor	6659860	6659861	+	asmbl_40105	none	blat.proc3825164.chain_3568	1	STRG.3295.1,STRG.3295.2,STRG.3295.4,blat.proc3825164.chain_3558,blat.proc3825164.chain_3559,blat.proc3825164.chain_3560,blat.proc3825164.chain_3563,blat.proc3825164.chain_3565,blat.proc3825164.chain_3569	9
scaffold_13	alternate_exon	5576344	5576713	-	asmbl_9698	none	STRG.15857.1,blat.proc3825156.chain_741	2	STRG.15857.2,STRG.15857.3,blat.proc3825156.chain_740	3
scaffold_9	alt_acceptor	13039805	13039806	+	asmbl_54481	none	STRG.11612.2	1	STRG.11612.1,blat.proc3825170.chain_412	2
scaffold_4	alt_acceptor	13430976	13430977	+	asmbl_41797	none	STRG.4981.1	1	STRG.4981.2,STRG.4981.3	2
scaffold_13	alt_acceptor	774	775	+	asmbl_10446	none	STRG.15421.1,blat.proc3825172.chain_132	2	STRG.15421.2	1
scaffold_24	spliced_intron	9120008	9120346	+	asmbl_32506,asmbl_32508,asmbl_32509,asmbl_32510,asmbl_32512,asmbl_32513,asmbl_32515	none	STRG.26942.1,Trinity_GG_32221_c0_g1_i8,Trinity_GG_32221_c0_g1_i9,blat.proc3825178.chain_170,blat.proc3825178.chain_173,blat.proc3825178.chain_174,blat.proc3825178.chain_176,blat.proc3825178.chain_177,blat.proc3825178.chain_178,blat.proc3825178.chain_179	10	Trinity_GG_32221_c0_g1_i2,blat.proc3825178.chain_171,blat.proc3825178.chain_175,blat.proc3825178.chain_180	4
scaffold_14	alt_acceptor	13601369	13601370	+	asmbl_12484,asmbl_12485	none	STRG.17648.1,STRG.17648.2	2	blat.proc3825172.chain_2301,blat.proc3825172.chain_2302	2
scaffold_23	alt_acceptor	5156922	5156923	-	asmbl_30886	none	STRG.25895.1	1	STRG.25895.2,Trinity_GG_14483_c0_g1_i1,blat.proc3825160.chain_3052	3
scaffold_19	spliced_intron	628249	628359	-	asmbl_21990	none	Trinity_GG_12182_c0_g1_i2,blat.proc3825158.chain_2687	2	STRG.21845.1,STRG.21845.2,STRG.21845.3,Trinity_GG_12182_c0_g1_i1,blat.proc3825158.chain_2686	5
scaffold_5	alt_acceptor	6290159	6290160	+	asmbl_45418	none	Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	2	STRG.6040.1,STRG.6040.2	2
scaffold_11	alternate_exon	11635943	11636184	+	asmbl_5983,asmbl_5984,asmbl_5985	none	blat.proc3825170.chain_2634,blat.proc3825170.chain_2636,blat.proc3825170.chain_2638	3	blat.proc3825170.chain_2635,blat.proc3825170.chain_2637,blat.proc3825170.chain_2640	3
scaffold_9	retained_exon	9657297	9657447	+	asmbl_54218,asmbl_54223,asmbl_54225	none	STRG.11344.1,STRG.11344.3,blat.proc3825170.chain_156,blat.proc3825170.chain_158	4	STRG.11344.2	1
scaffold_27	retained_exon	7522112	7522151	+	asmbl_36467	none	STRG.29117.4	1	STRG.29117.1,STRG.29117.2,blat.proc3825178.chain_2324	3
scaffold_19	alternate_exon	11461674	11463105	-	asmbl_22387	none	STRG.22479.1,blat.proc3825158.chain_3198	2	blat.proc3825158.chain_3201	1
scaffold_19	alt_acceptor	6213528	6213529	+	asmbl_21399	none	STRG.22153.2,blat.proc3825174.chain_3107	2	STRG.22153.1,STRG.22153.3,blat.proc3825174.chain_3104,blat.proc3825174.chain_3106	4
scaffold_13	alt_acceptor	7319270	7319271	-	asmbl_9875	none	STRG.16033.1,Trinity_GG_9015_c0_g1_i1,blat.proc3825156.chain_930	3	STRG.16033.2,Trinity_GG_9015_c0_g1_i2,blat.proc3825156.chain_931	3
scaffold_2	alt_donor	18707681	18707682	+	asmbl_25229,asmbl_25231	none	STRG.2747.2,Trinity_GG_18855_c0_g1_i1,Trinity_GG_18855_c0_g1_i2,blat.proc3825164.chain_2994,blat.proc3825164.chain_2996	5	STRG.2747.1,Trinity_GG_18855_c0_g1_i3,blat.proc3825164.chain_2995	3
scaffold_21	alternate_exon	256485	257306	-	asmbl_27285,asmbl_27295	none	STRG.23725.1,STRG.23725.3	2	STRG.23725.4	1
scaffold_5	retained_exon	8671499	8671543	+	asmbl_45562	none	STRG.6204.2,blat.proc3825166.chain_2324	2	STRG.6204.1,blat.proc3825166.chain_2325	2
scaffold_5	retained_intron	8538359	8538561	-	asmbl_44211	none	Trinity_GG_3502_c0_g1_i2,blat.proc3825150.chain_2417	2	STRG.6198.1,STRG.6198.2,STRG.6198.3,STRG.6198.4,STRG.6198.5,blat.proc3825150.chain_2418,blat.proc3825150.chain_2419,blat.proc3825150.chain_2420,blat.proc3825150.chain_2421,blat.proc3825150.chain_2423	10
scaffold_9	starts_in_intron	2798564	2798564	+	asmbl_53861,asmbl_53865	none	STRG.10918.6,Trinity_GG_23372_c0_g1_i4,blat.proc3825168.chain_3427,blat.proc3825168.chain_3435	4	STRG.10918.1,STRG.10918.2,STRG.10918.4,STRG.10918.5,Trinity_GG_23372_c0_g1_i5,Trinity_GG_23372_c0_g1_i7,Trinity_GG_23372_c0_g1_i8,blat.proc3825168.chain_3429,blat.proc3825168.chain_3431,blat.proc3825168.chain_3433	10
scaffold_18	retained_intron	8865798	8865880	-	asmbl_20029,asmbl_20032,asmbl_20033	none	blat.proc3825158.chain_2355,blat.proc3825158.chain_2360,blat.proc3825158.chain_2362	3	STRG.21549.1,STRG.21549.2,blat.proc3825158.chain_2354,blat.proc3825158.chain_2358,blat.proc3825158.chain_2359,blat.proc3825158.chain_2361	6
scaffold_16	skipped_exon	744159	744656	-	asmbl_16902	none	blat.proc3825158.chain_189	1	STRG.19055.1,blat.proc3825158.chain_184,blat.proc3825158.chain_185	3
scaffold_723	spliced_intron	2724	3247	-	asmbl_51618,asmbl_51620,asmbl_51621	none	STRG.30450.1,STRG.30450.3,STRG.30450.4,Trinity_GG_17081_c0_g1_i4,blat.proc3825162.chain_3548,blat.proc3825162.chain_3549,blat.proc3825162.chain_3550	7	STRG.30450.2,Trinity_GG_17081_c0_g1_i7,blat.proc3825162.chain_3544,blat.proc3825162.chain_3547	4
scaffold_14	spliced_intron	4116419	4116564	+	asmbl_11972	none	STRG.16963.1,Trinity_GG_26646_c0_g1_i3,blat.proc3825172.chain_1741	3	STRG.16963.2,STRG.16963.3,Trinity_GG_26646_c0_g1_i1,Trinity_GG_26646_c0_g1_i5,blat.proc3825172.chain_1739,blat.proc3825172.chain_1740	6
scaffold_5	starts_in_intron	18263727	18263727	+	asmbl_46234	none	STRG.6968.5,Trinity_GG_21147_c0_g2_i9,blat.proc3825166.chain_3189	3	STRG.6968.1,STRG.6968.2,blat.proc3825166.chain_3184,blat.proc3825166.chain_3187,blat.proc3825166.chain_3188,blat.proc3825166.chain_3190,blat.proc3825166.chain_3191	7
scaffold_4	alternate_exon	17636932	17637219	-	asmbl_43295	none	STRG.5357.1	1	STRG.5357.2	1
scaffold_3	starts_in_intron	3262234	3262234	+	asmbl_39940	none	Trinity_GG_19083_c1_g1_i1,blat.proc3825164.chain_3394	2	STRG.3072.2,STRG.3072.6,blat.proc3825164.chain_3387	3
scaffold_4	starts_in_intron	12728165	12728165	+	asmbl_41745	none	Trinity_GG_20040_c1_g1_i1,blat.proc3825166.chain_1318	2	STRG.4914.1,STRG.4914.2,blat.proc3825166.chain_1316,blat.proc3825166.chain_1317	4
scaffold_2	skipped_exon	14231852	14232094	-	asmbl_23590	none	STRG.2421.1	1	blat.proc3825148.chain_2420	1
scaffold_10	alt_acceptor	1425719	1425720	+	asmbl_2932,asmbl_2938	none	STRG.12016.3,Trinity_GG_23995_c0_g1_i4,blat.proc3825170.chain_765	3	STRG.12016.1,STRG.12016.4,STRG.12016.5,Trinity_GG_23995_c0_g1_i6,blat.proc3825170.chain_760,blat.proc3825170.chain_763	6
scaffold_26	alternate_exon	1318707	1324625	-	asmbl_35398	none	STRG.27913.1	1	STRG.27913.4	1
scaffold_11	alternate_exon	15833425	15833770	+	asmbl_6136	none	blat.proc3825170.chain_2797	1	STRG.14321.3	1
scaffold_14	spliced_intron	8002248	8002475	+	asmbl_12184	none	Trinity_GG_26783_c0_g1_i4,blat.proc3825172.chain_1976	2	STRG.17214.1,STRG.17214.2,Trinity_GG_26783_c0_g1_i1,Trinity_GG_26783_c0_g1_i3,blat.proc3825172.chain_1973,blat.proc3825172.chain_1974	6
scaffold_14	spliced_intron	6880513	6880765	+	asmbl_12107	none	STRG.17128.1,blat.proc3825172.chain_1897	2	blat.proc3825172.chain_1898	1
scaffold_8	spliced_intron	18084290	18084429	-	asmbl_52502,asmbl_52504,asmbl_52507	none	STRG.10710.1,STRG.10710.5,Trinity_GG_5955_c0_g1_i2,Trinity_GG_5955_c0_g1_i4,blat.proc3825152.chain_2979,blat.proc3825152.chain_2982	6	STRG.10710.2,STRG.10710.3,STRG.10710.4,Trinity_GG_5955_c0_g1_i3,blat.proc3825152.chain_2981	5
scaffold_13	starts_in_intron	5707027	5707027	-	asmbl_9709	none	blat.proc3825156.chain_733	1	STRG.15881.1,STRG.15881.2,STRG.15881.3,blat.proc3825156.chain_726,blat.proc3825156.chain_732	5
scaffold_17	starts_in_intron	9566961	9566961	+	asmbl_19113,asmbl_19115	none	STRG.20575.2,Trinity_GG_28570_c0_g1_i3,blat.proc3825174.chain_1411	3	STRG.20575.1,Trinity_GG_28570_c0_g1_i1,blat.proc3825174.chain_1413	3
scaffold_15	alt_donor	1263961	1263962	+	asmbl_15000	none	STRG.17942.1	1	blat.proc3825172.chain_2635,blat.proc3825172.chain_2636	2
scaffold_11	alt_donor	12045409	12045410	+	asmbl_6007	none	STRG.14127.1,blat.proc3825170.chain_2659	2	STRG.14127.2,STRG.14127.3,Trinity_GG_25095_c0_g1_i2,blat.proc3825170.chain_2658	4
scaffold_14	retained_exon	15584767	15585028	+	asmbl_12629,asmbl_12630	none	STRG.17811.2,STRG.17811.6	2	STRG.17811.3,blat.proc3825172.chain_2554,blat.proc3825172.chain_2556	3
scaffold_25	alt_donor	666084	666085	+	asmbl_33348	none	STRG.27122.2	1	STRG.27122.1	1
scaffold_12	alt_donor	14283899	14283900	+	asmbl_8090	none	blat.proc3825172.chain_15	1	STRG.15266.1,blat.proc3825172.chain_16	2
scaffold_18	skipped_exon	10128612	10130396	+	asmbl_20903,asmbl_20904	none	STRG.21606.1,blat.proc3825174.chain_2644	2	STRG.21606.2,blat.proc3825174.chain_2643	2
scaffold_4	spliced_intron	3528251	3528359	-	asmbl_42449	none	STRG.4289.3	1	STRG.4289.1	1
scaffold_10	alternate_exon	4912313	4912634	+	asmbl_3131	none	STRG.12313.1,blat.proc3825170.chain_1005	2	STRG.12312.3	1
scaffold_20	starts_in_intron	8385867	8385867	+	asmbl_26773	none	blat.proc3825176.chain_526	1	STRG.23389.1,blat.proc3825176.chain_525	2
scaffold_13	alternate_exon	6047140	6048100	-	asmbl_9762	none	STRG.15915.2,Trinity_GG_8939_c1_g1_i1,blat.proc3825156.chain_780,blat.proc3825156.chain_786	4	STRG.15915.1,STRG.15915.5,blat.proc3825156.chain_778,blat.proc3825156.chain_782	4
scaffold_6	retained_intron	5753989	5754213	+	asmbl_46974,asmbl_46975,asmbl_46977	none	blat.proc3825166.chain_3731,blat.proc3825166.chain_3733,blat.proc3825166.chain_3735	3	STRG.7534.1,blat.proc3825166.chain_3732,blat.proc3825166.chain_3734,blat.proc3825166.chain_3736	4
scaffold_4	ends_in_intron	8087436	8087436	-	asmbl_42742	none	Trinity_GG_2589_c1_g1_i1,blat.proc3825150.chain_854	2	STRG.4624.1,blat.proc3825150.chain_853	2
scaffold_6	alt_donor	12002420	12002421	+	asmbl_47367,asmbl_47370	none	STRG.7971.1,STRG.7971.2	2	STRG.7971.3	1
scaffold_15	retained_intron	2730568	2730589	-	asmbl_14037	none	STRG.18061.1,Trinity_GG_10156_c0_g1_i1,Trinity_GG_10156_c0_g1_i2	3	blat.proc3825156.chain_2882,blat.proc3825156.chain_2883	2
scaffold_20	starts_in_intron	11943096	11943096	-	asmbl_26204	none	blat.proc3825160.chain_776	1	STRG.23697.1,blat.proc3825160.chain_777,blat.proc3825160.chain_778	3
scaffold_7	retained_intron	8296441	8297094	-	asmbl_50996,asmbl_50998	none	STRG.9066.2,Trinity_GG_5116_c0_g1_i4,blat.proc3825152.chain_1452,blat.proc3825152.chain_1455	4	STRG.9066.3,blat.proc3825152.chain_1453	2
scaffold_6	spliced_intron	3057498	3057599	+	asmbl_46798,asmbl_46800,asmbl_46801,asmbl_46803,asmbl_46805,asmbl_46806	none	STRG.7319.1,STRG.7319.2,STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3520,blat.proc3825166.chain_3521,blat.proc3825166.chain_3522,blat.proc3825166.chain_3523,blat.proc3825166.chain_3524	9	blat.proc3825166.chain_3526	1
scaffold_13	starts_in_intron	6047317	6047317	-	asmbl_9764	none	blat.proc3825156.chain_785	1	STRG.15915.4,blat.proc3825156.chain_784	2
scaffold_20	starts_in_intron	2632493	2632493	-	asmbl_25656	none	blat.proc3825160.chain_62	1	blat.proc3825160.chain_64	1
scaffold_2	alternate_exon	7785426	7786347	+	asmbl_24572,asmbl_24576	none	STRG.2075.1,blat.proc3825164.chain_2228,blat.proc3825164.chain_2235,blat.proc3825164.chain_2236	4	STRG.2075.2,STRG.2075.3,STRG.2075.5,Trinity_GG_18484_c0_g1_i4,blat.proc3825164.chain_2227,blat.proc3825164.chain_2229,blat.proc3825164.chain_2231	7
scaffold_18	starts_in_intron	814841	814841	+	asmbl_20323	none	blat.proc3825174.chain_1947	1	STRG.21006.1,STRG.21006.2,blat.proc3825174.chain_1948	3
scaffold_1	retained_intron	5220774	5220883	-	asmbl_250	none	STRG.330.3	1	STRG.330.1,STRG.330.2,blat.proc3825148.chain_239,blat.proc3825148.chain_240	4
scaffold_22	retained_intron	5922960	5923153	+	asmbl_30069,asmbl_30070	none	STRG.24938.2,Trinity_GG_31103_c0_g1_i2,blat.proc3825176.chain_2046	3	STRG.24938.1,blat.proc3825176.chain_2045	2
scaffold_15	ends_in_intron	12420966	12420966	+	asmbl_15559	none	Trinity_GG_27571_c0_g1_i5,blat.proc3825172.chain_3322	2	STRG.18696.1,STRG.18696.2,blat.proc3825172.chain_3323,blat.proc3825172.chain_3324,blat.proc3825172.chain_3325,blat.proc3825172.chain_3326	6
scaffold_25	spliced_intron	996826	996894	-	asmbl_34016,asmbl_34019	none	STRG.27160.1,blat.proc3825162.chain_520,blat.proc3825162.chain_521	3	blat.proc3825162.chain_519	1
scaffold_4	ends_in_intron	7263840	7263840	+	asmbl_41482	none	STRG.4561.1,blat.proc3825166.chain_1051	2	STRG.4561.2,STRG.4561.5,blat.proc3825166.chain_1053	3
scaffold_28	alt_acceptor	7875626	7875627	-	asmbl_38427,asmbl_38429,asmbl_38431	none	STRG.29870.1,blat.proc3825162.chain_3026,blat.proc3825162.chain_3029,blat.proc3825162.chain_3030	4	blat.proc3825162.chain_3028	1
scaffold_1	retained_intron	4602131	4602216	+	asmbl_1679	none	Trinity_GG_17443_c0_g1_i2,blat.proc3825164.chain_293	2	STRG.287.1,blat.proc3825164.chain_292	2
scaffold_17	ends_in_intron	11338545	11338545	-	asmbl_18279	none	blat.proc3825158.chain_1616	1	STRG.20687.1,STRG.20687.2,blat.proc3825158.chain_1614,blat.proc3825158.chain_1615	4
scaffold_10	skipped_exon	6598053	6598565	-	asmbl_4477,asmbl_4479	none	STRG.12480.1,blat.proc3825154.chain_991,blat.proc3825154.chain_992	3	STRG.12480.2	1
scaffold_14	alternate_exon	11246670	11249095	-	asmbl_13461,asmbl_13462,asmbl_13463,asmbl_13465	none	STRG.17460.1,STRG.17460.3,STRG.17460.4,blat.proc3825156.chain_2266,blat.proc3825156.chain_2267	5	STRG.17460.2	1
scaffold_52	retained_intron	6626	6929	+	asmbl_46527,asmbl_46528	none	STRG.30059.1,STRG.30059.2,Trinity_GG_33948_c0_g1_i1,Trinity_GG_33948_c0_g1_i3,Trinity_GG_33948_c0_g1_i4,Trinity_GG_33948_c0_g1_i6,blat.proc3825178.chain_3180,blat.proc3825178.chain_3181,blat.proc3825178.chain_3183,blat.proc3825178.chain_3184	10	STRG.30059.3,Trinity_GG_33948_c0_g1_i2,Trinity_GG_33948_c0_g1_i5,blat.proc3825178.chain_3179,blat.proc3825178.chain_3182	5
scaffold_22	alt_donor	8823814	8823815	+	asmbl_30289	none	STRG.25241.2	1	STRG.25241.4	1
scaffold_9	starts_in_intron	12067192	12067192	-	asmbl_55348	none	blat.proc3825152.chain_3728	1	STRG.11529.2,STRG.11529.3	2
scaffold_12	spliced_intron	7172893	7173215	+	asmbl_7721,asmbl_7723	none	STRG.14794.2,blat.proc3825170.chain_3304,blat.proc3825170.chain_3305	3	blat.proc3825170.chain_3303	1
scaffold_13	alt_acceptor	8353539	8353540	+	asmbl_11129	none	STRG.16130.3	1	STRG.16130.1,STRG.16130.2,blat.proc3825172.chain_915	3
scaffold_23	alt_donor	9464634	9464635	+	asmbl_31797	none	blat.proc3825160.chain_3319	1	STRG.26168.2	1
scaffold_8	ends_in_intron	7803562	7803562	-	asmbl_51927	none	blat.proc3825152.chain_2314	1	STRG.10100.1,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316,blat.proc3825152.chain_2318	4
scaffold_23	alt_donor	4899470	4899471	+	asmbl_31533	none	Trinity_GG_31591_c0_g1_i3,blat.proc3825176.chain_2816	2	STRG.25884.1,STRG.25884.2,STRG.25884.4,Trinity_GG_31591_c0_g1_i2,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2817,blat.proc3825176.chain_2819	7
scaffold_16	retained_intron	7910028	7910131	+	asmbl_16361,asmbl_16362	none	Trinity_GG_27913_c0_g1_i2,blat.proc3825174.chain_281,blat.proc3825174.chain_283	3	STRG.19445.1,Trinity_GG_27913_c0_g1_i1,blat.proc3825174.chain_282	3
scaffold_23	alternate_exon	2586469	2587041	-	asmbl_30745	none	blat.proc3825160.chain_2778	1	STRG.25725.2,blat.proc3825160.chain_2777	2
scaffold_7	alt_donor	4933150	4933151	+	asmbl_49779	none	blat.proc3825168.chain_1351	1	STRG.8852.2,blat.proc3825168.chain_1347	2
scaffold_24	alternate_exon	5312389	5312421	-	asmbl_32894	none	Trinity_GG_14889_c0_g1_i2,blat.proc3825160.chain_3749	2	STRG.26618.1,blat.proc3825160.chain_3748	2
scaffold_10	alternate_exon	9548547	9557632	+	asmbl_3397,asmbl_3403,asmbl_3404	none	STRG.12711.1,STRG.12711.2,STRG.12711.3,Trinity_GG_24296_c0_g1_i14,blat.proc3825170.chain_1286	5	STRG.12711.4,Trinity_GG_24296_c2_g1_i1,blat.proc3825170.chain_1289	3
scaffold_7	ends_in_intron	8316606	8316606	-	asmbl_51005,asmbl_51006	none	blat.proc3825152.chain_1369,blat.proc3825152.chain_1371	2	STRG.9070.4	1
scaffold_22	retained_intron	7416523	7416632	-	asmbl_29395,asmbl_29397	none	STRG.25079.1,blat.proc3825160.chain_2234,blat.proc3825160.chain_2236	3	STRG.25079.2	1
scaffold_26	skipped_exon	3178424	3179728	-	asmbl_35472	none	STRG.28007.1,blat.proc3825162.chain_1324	2	STRG.28007.2,blat.proc3825162.chain_1323	2
scaffold_14	ends_in_intron	6449859	6449859	-	asmbl_13136	none	Trinity_GG_9602_c0_g1_i3,blat.proc3825156.chain_1921	2	STRG.17095.1,blat.proc3825156.chain_1922	2
scaffold_13	retained_intron	6398067	6398296	+	asmbl_10931	none	blat.proc3825172.chain_657	1	STRG.15929.1,STRG.15929.2,STRG.15929.3,STRG.15929.4,STRG.15929.5,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i2,Trinity_GG_26055_c0_g1_i3,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_653,blat.proc3825172.chain_654,blat.proc3825172.chain_655,blat.proc3825172.chain_656	15
scaffold_19	alternate_exon	13234905	13241466	-	asmbl_22609	none	STRG.22653.2,blat.proc3825158.chain_3427	2	blat.proc3825158.chain_3424	1
scaffold_18	alt_donor	4712220	4712221	-	asmbl_19817	none	STRG.21263.1	1	STRG.21263.2	1
scaffold_5	ends_in_intron	1575089	1575089	+	asmbl_45133	none	blat.proc3825166.chain_1910	1	STRG.5714.1	1
scaffold_2	starts_in_intron	6647540	6647540	-	asmbl_23218	none	blat.proc3825148.chain_2037	1	STRG.2030.1,STRG.2030.2,STRG.2030.3,blat.proc3825148.chain_2032,blat.proc3825148.chain_2033	5
scaffold_28	spliced_intron	6515507	6515534	-	asmbl_38347	none	STRG.29749.2	1	STRG.29749.1,STRG.29749.3	2
scaffold_8	spliced_intron	12560537	12560677	+	asmbl_53318	none	STRG.10425.1,Trinity_GG_23125_c0_g1_i1,blat.proc3825168.chain_3002	3	STRG.10425.2	1
scaffold_27	alternate_exon	975197	976500	+	asmbl_35973	none	Trinity_GG_33133_c0_g1_i4,blat.proc3825178.chain_1719	2	Trinity_GG_33133_c0_g1_i3,Trinity_GG_33133_c0_g2_i1,blat.proc3825178.chain_1718,blat.proc3825178.chain_1721	4
scaffold_20	starts_in_intron	6547587	6547587	+	asmbl_26661	none	STRG.23235.1	1	blat.proc3825176.chain_337	1
scaffold_14	retained_intron	7297974	7298196	+	asmbl_12147,asmbl_12148	none	blat.proc3825172.chain_1941,blat.proc3825172.chain_1942	2	STRG.17169.1,STRG.17169.2,STRG.17169.3,blat.proc3825172.chain_1939,blat.proc3825172.chain_1940	5
scaffold_21	alt_acceptor	5279754	5279755	-	asmbl_27645,asmbl_27647	none	STRG.24066.3,STRG.24066.4,blat.proc3825160.chain_1167	3	STRG.24066.2,STRG.24066.5,Trinity_GG_13405_c0_g1_i4,blat.proc3825160.chain_1168	4
scaffold_14	alt_donor	3588309	3588310	+	asmbl_11953,asmbl_11955	none	STRG.16942.2,blat.proc3825172.chain_1710,blat.proc3825172.chain_1711	3	STRG.16942.1,STRG.16942.3,STRG.16942.4,blat.proc3825172.chain_1709	4
scaffold_17	starts_in_intron	13973176	13973176	-	asmbl_18398	none	STRG.20885.2,blat.proc3825158.chain_1832	2	STRG.20885.1,STRG.20885.3,blat.proc3825158.chain_1833,blat.proc3825158.chain_1834,blat.proc3825158.chain_1835	5
scaffold_6	spliced_intron	8878330	8878408	-	asmbl_48597	none	STRG.7770.1,blat.proc3825152.chain_149	2	blat.proc3825152.chain_150	1
scaffold_24	alternate_exon	8895974	8896183	-	asmbl_33119	none	blat.proc3825162.chain_278	1	STRG.26912.1	1
scaffold_2	spliced_intron	3631902	3632007	+	asmbl_24290,asmbl_24291,asmbl_24292,asmbl_24294	none	STRG.1787.1,STRG.1787.2,Trinity_GG_18311_c0_g1_i6,blat.proc3825164.chain_1919	4	STRG.1787.3	1
scaffold_16	starts_in_intron	441605	441605	-	asmbl_16881	none	blat.proc3825158.chain_211	1	blat.proc3825158.chain_209	1
scaffold_10	starts_in_intron	1174697	1174697	+	asmbl_2918	none	Trinity_GG_23997_c0_g2_i1,blat.proc3825170.chain_771	2	STRG.12009.2,blat.proc3825170.chain_769,blat.proc3825170.chain_770	3
scaffold_26	retained_exon	4333329	4333373	-	asmbl_35542	none	STRG.28149.4	1	STRG.28149.1	1
scaffold_14	skipped_exon	9287370	9288497	-	asmbl_13371,asmbl_13376,asmbl_13378	none	STRG.17341.2,blat.proc3825156.chain_2167,blat.proc3825156.chain_2169,blat.proc3825156.chain_2171	4	STRG.17341.1,STRG.17341.3,STRG.17341.4,blat.proc3825156.chain_2168,blat.proc3825156.chain_2170,blat.proc3825156.chain_2173,blat.proc3825156.chain_2174,blat.proc3825156.chain_2175,blat.proc3825156.chain_2176	9
scaffold_23	alt_donor	8811647	8811648	+	asmbl_31782	none	STRG.26148.1,blat.proc3825176.chain_3122	2	STRG.26148.2,blat.proc3825176.chain_3119	2
scaffold_18	starts_in_intron	3793153	3793153	-	asmbl_19773,asmbl_19778	none	Trinity_GG_11882_c0_g1_i2,blat.proc3825158.chain_2172,blat.proc3825158.chain_2177	3	STRG.21197.1,STRG.21197.3,Trinity_GG_11882_c0_g1_i8,blat.proc3825158.chain_2175,blat.proc3825158.chain_2176,blat.proc3825158.chain_2178,blat.proc3825158.chain_2179	7
scaffold_24	starts_in_intron	8865389	8865389	+	asmbl_32451	none	Trinity_GG_32131_c0_g1_i2,blat.proc3825178.chain_13	2	STRG.26908.1,blat.proc3825178.chain_14	2
scaffold_3	ends_in_intron	14423226	14423226	+	asmbl_40522	none	STRG.3788.3,blat.proc3825166.chain_307	2	STRG.3788.1,STRG.3788.2,Trinity_GG_19450_c0_g1_i1,Trinity_GG_19450_c0_g1_i2,Trinity_GG_19450_c0_g1_i4,Trinity_GG_19450_c0_g1_i5,blat.proc3825166.chain_302,blat.proc3825166.chain_303,blat.proc3825166.chain_304,blat.proc3825166.chain_305	10
scaffold_2	spliced_intron	8059384	8059478	-	asmbl_23309	none	STRG.2093.2,blat.proc3825148.chain_2111	2	STRG.2093.1,Trinity_GG_1159_c0_g1_i1,blat.proc3825148.chain_2110	3
scaffold_12	retained_intron	16182802	16183019	-	asmbl_9105	none	STRG.15375.3	1	STRG.15375.1,STRG.15375.2,Trinity_GG_8604_c0_g1_i1,Trinity_GG_8604_c0_g1_i2,blat.proc3825156.chain_185,blat.proc3825156.chain_186	6
scaffold_7	alt_donor	12082951	12082952	+	asmbl_50221	none	STRG.9316.4	1	STRG.9316.3	1
scaffold_12	spliced_intron	7275053	7275198	-	asmbl_8563,asmbl_8564,asmbl_8566	none	STRG.14801.1,STRG.14801.2,Trinity_GG_8260_c0_g1_i1,Trinity_GG_8260_c0_g1_i2,Trinity_GG_8260_c0_g1_i3,blat.proc3825154.chain_3307,blat.proc3825154.chain_3308,blat.proc3825154.chain_3309	8	Trinity_GG_8260_c0_g1_i5,blat.proc3825154.chain_3306	2
scaffold_2	alt_donor	8305940	8305941	+	asmbl_24631	none	STRG.2113.1,Trinity_GG_18514_c1_g1_i1,blat.proc3825164.chain_2316	3	STRG.2113.2	1
scaffold_20	retained_exon	5549860	5549902	-	asmbl_25769,asmbl_25773	none	STRG.23182.2,STRG.23182.3	2	STRG.23182.1,blat.proc3825160.chain_211,blat.proc3825160.chain_212,blat.proc3825160.chain_213,blat.proc3825160.chain_214,blat.proc3825160.chain_216,blat.proc3825160.chain_217	7
scaffold_20	spliced_intron	11591608	11592897	-	asmbl_26168,asmbl_26169	none	STRG.23678.1,STRG.23678.2	2	Trinity_GG_13164_c0_g1_i25,Trinity_GG_13164_c0_g3_i1,blat.proc3825160.chain_696,blat.proc3825160.chain_704	4
scaffold_16	spliced_intron	125643	125887	+	asmbl_15996,asmbl_15998,asmbl_16001	none	STRG.19007.1,STRG.19007.4,Trinity_GG_27742_c0_g1_i1,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3682,blat.proc3825172.chain_3683	6	Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3684	2
scaffold_19	spliced_intron	12436516	12436685	+	asmbl_21799,asmbl_21801,asmbl_21802,asmbl_21803	none	STRG.22571.1,blat.proc3825174.chain_3594,blat.proc3825174.chain_3596,blat.proc3825174.chain_3597,blat.proc3825174.chain_3598	5	blat.proc3825174.chain_3595	1
scaffold_9	retained_intron	9643517	9643587	+	asmbl_54212	none	blat.proc3825170.chain_119	1	STRG.11338.1,blat.proc3825170.chain_118	2
scaffold_506	spliced_intron	2749	3028	+	asmbl_46503,asmbl_46505	none	STRG.30354.2,blat.proc3825178.chain_3451	2	blat.proc3825178.chain_3450	1
scaffold_19	alt_donor	3560904	3560905	+	asmbl_21328,asmbl_21329	none	STRG.22045.3,STRG.22045.4,Trinity_GG_29503_c1_g1_i1,blat.proc3825174.chain_3079	4	STRG.22045.1	1
scaffold_21	starts_in_intron	4945618	4945618	+	asmbl_28540	none	Trinity_GG_30599_c0_g1_i2,blat.proc3825176.chain_1193	2	STRG.24044.1,blat.proc3825176.chain_1190,blat.proc3825176.chain_1191	3
scaffold_1	starts_in_intron	7270262	7270262	-	asmbl_419	none	blat.proc3825148.chain_504	1	blat.proc3825148.chain_507	1
scaffold_8	ends_in_intron	10135140	10135140	+	asmbl_53144,asmbl_53146	none	STRG.10269.1,Trinity_GG_23027_c0_g1_i1,blat.proc3825168.chain_2838,blat.proc3825168.chain_2839	4	STRG.10269.2	1
scaffold_13	alt_donor	2506963	2506964	+	asmbl_10619	none	STRG.15559.1,Trinity_GG_25851_c0_g1_i5,blat.proc3825172.chain_284	3	STRG.15559.2,Trinity_GG_25851_c0_g1_i4,blat.proc3825172.chain_285	3
scaffold_11	starts_in_intron	9513938	9513938	-	asmbl_6937	none	STRG.13980.1,blat.proc3825154.chain_2506	2	STRG.13980.2,Trinity_GG_7810_c0_g1_i1,blat.proc3825154.chain_2507	3
scaffold_8	skipped_exon	11297094	11298140	+	asmbl_53214,asmbl_53215	none	STRG.10343.1,STRG.10343.3,Trinity_GG_23079_c0_g1_i3,blat.proc3825168.chain_2926	4	STRG.10343.2,Trinity_GG_23079_c0_g1_i2,blat.proc3825168.chain_2924	3
scaffold_16	retained_intron	6196265	6196569	+	asmbl_16294	none	blat.proc3825174.chain_261	1	STRG.19370.1,STRG.19370.2,blat.proc3825174.chain_257,blat.proc3825174.chain_258,blat.proc3825174.chain_260	5
scaffold_7	alt_donor	9744192	9744193	+	asmbl_50093	none	STRG.9166.1,blat.proc3825168.chain_1688	2	STRG.9166.2,blat.proc3825168.chain_1687	2
scaffold_20	skipped_exon	2403016	2404377	+	asmbl_26489,asmbl_26490	none	STRG.22972.1,blat.proc3825176.chain_157	2	STRG.22972.2,blat.proc3825176.chain_155,blat.proc3825176.chain_156	3
scaffold_15	alternate_exon	15379436	15381535	-	asmbl_14768	none	STRG.18926.1,blat.proc3825156.chain_3737	2	STRG.18926.2,blat.proc3825156.chain_3738	2
scaffold_5	ends_in_intron	6608028	6608028	-	asmbl_44115	none	blat.proc3825150.chain_2267	1	STRG.6064.1	1
scaffold_10	starts_in_intron	6410223	6410223	-	asmbl_4450	none	blat.proc3825154.chain_1024	1	STRG.12469.1,blat.proc3825154.chain_1023,blat.proc3825154.chain_1025	3
scaffold_15	starts_in_intron	1963859	1963859	+	asmbl_15044	none	blat.proc3825172.chain_2701	1	STRG.17992.1,STRG.17992.2,STRG.17992.3,blat.proc3825172.chain_2697	4
scaffold_2	retained_intron	7925080	7925321	-	asmbl_23296	none	blat.proc3825148.chain_2075	1	STRG.2089.1,blat.proc3825148.chain_2077,blat.proc3825148.chain_2078	3
scaffold_14	alt_acceptor	871676	871677	+	asmbl_11776,asmbl_11778	none	STRG.16759.2,STRG.16759.3	2	STRG.16759.1,blat.proc3825172.chain_1525	2
scaffold_28	ends_in_intron	7722629	7722629	+	asmbl_37704	none	STRG.29845.2	1	STRG.29845.1,blat.proc3825178.chain_3018,blat.proc3825178.chain_3022	3
scaffold_14	alt_acceptor	1552135	1552136	-	asmbl_12892	none	STRG.16798.2,blat.proc3825156.chain_1570	2	STRG.16798.1,blat.proc3825156.chain_1571	2
scaffold_12	spliced_intron	12341400	12341510	-	asmbl_8874,asmbl_8876	none	STRG.15142.1,blat.proc3825154.chain_3644,blat.proc3825154.chain_3645	3	Trinity_GG_8455_c0_g1_i2,blat.proc3825154.chain_3643	2
scaffold_6	starts_in_intron	8955444	8955444	+	asmbl_47188	none	Trinity_GG_21570_c0_g1_i1,blat.proc3825168.chain_200	2	STRG.7778.1,STRG.7778.2,blat.proc3825168.chain_198,blat.proc3825168.chain_201	4
scaffold_19	retained_exon	12972818	12972868	-	asmbl_22573,asmbl_22576	none	STRG.22618.1,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3363	5	STRG.22618.2,Trinity_GG_12569_c0_g1_i6,blat.proc3825158.chain_3364	3
scaffold_15	retained_intron	12000469	12000658	-	asmbl_14549,asmbl_14550	none	Trinity_GG_10485_c0_g1_i4,blat.proc3825156.chain_3532,blat.proc3825156.chain_3533	3	STRG.18639.1,STRG.18639.4,Trinity_GG_10485_c0_g1_i2,blat.proc3825156.chain_3534	4
scaffold_17	alternate_exon	8219598	8220292	+	asmbl_18957,asmbl_18958	none	blat.proc3825174.chain_1239,blat.proc3825174.chain_1242	2	STRG.20449.3	1
scaffold_7	alt_acceptor	809120	809121	+	asmbl_49564,asmbl_49565,asmbl_49567	none	STRG.8623.2,blat.proc3825168.chain_1125,blat.proc3825168.chain_1129	3	STRG.8623.1,blat.proc3825168.chain_1127,blat.proc3825168.chain_1130	3
scaffold_6	starts_in_intron	8596979	8596979	+	asmbl_47165	none	blat.proc3825168.chain_184	1	STRG.7741.1,blat.proc3825168.chain_185	2
scaffold_8	alternate_exon	11636560	11640370	-	asmbl_52151,asmbl_52152	none	STRG.10374.1,STRG.10374.3,blat.proc3825152.chain_2598	3	STRG.10374.2,blat.proc3825152.chain_2597	2
scaffold_6	alt_acceptor	3214578	3214579	-	asmbl_48231,asmbl_48233	none	STRG.7327.1,STRG.7327.3,blat.proc3825150.chain_3412	3	STRG.7327.2,blat.proc3825150.chain_3410,blat.proc3825150.chain_3411	3
scaffold_4	alt_acceptor	14626620	14626621	+	asmbl_41900	none	STRG.5088.1,blat.proc3825166.chain_1506	2	STRG.5088.2	1
scaffold_1	alt_acceptor	12683639	12683640	+	asmbl_2248	none	STRG.892.2	1	STRG.892.1,blat.proc3825164.chain_1038	2
scaffold_1	alt_donor	13813183	13813184	-	asmbl_846	none	STRG.991.2,blat.proc3825148.chain_988	2	STRG.991.1,blat.proc3825148.chain_987	2
scaffold_2	alternate_exon	6517217	6517412	+	asmbl_24473	none	STRG.2022.4	1	STRG.2022.5	1
scaffold_27	alternate_exon	4796566	4796716	-	asmbl_36969	none	STRG.28912.2,blat.proc3825162.chain_2143	2	STRG.28912.1,blat.proc3825162.chain_2144	2
scaffold_26	retained_intron	3361453	3361585	+	asmbl_34775	none	blat.proc3825178.chain_1041	1	STRG.28022.2,blat.proc3825178.chain_1043	2
scaffold_1	starts_in_intron	14193392	14193392	-	asmbl_874	none	blat.proc3825148.chain_973	1	STRG.1005.1,blat.proc3825148.chain_968,blat.proc3825148.chain_969,blat.proc3825148.chain_970,blat.proc3825148.chain_971	5
scaffold_20	alt_acceptor	2229976	2229977	-	asmbl_25639	none	STRG.22961.2,blat.proc3825160.chain_55	2	STRG.22961.1,blat.proc3825160.chain_54	2
scaffold_19	alt_donor	6686578	6686579	+	asmbl_21429,asmbl_21431	none	STRG.22189.1,Trinity_GG_29526_c0_g1_i1,Trinity_GG_29526_c0_g1_i3,blat.proc3825174.chain_3124,blat.proc3825174.chain_3127	5	blat.proc3825174.chain_3126	1
scaffold_9	retained_intron	16570130	16570300	+	asmbl_54600,asmbl_54601	none	Trinity_GG_23904_c0_g1_i18,Trinity_GG_23904_c0_g1_i19,blat.proc3825170.chain_613,blat.proc3825170.chain_614	4	STRG.11807.1,STRG.11807.2,Trinity_GG_23904_c0_g1_i10,Trinity_GG_23904_c0_g1_i14,Trinity_GG_23904_c0_g1_i17,Trinity_GG_23904_c0_g1_i21,Trinity_GG_23904_c0_g1_i7,blat.proc3825170.chain_610,blat.proc3825170.chain_611,blat.proc3825170.chain_612,blat.proc3825170.chain_615,blat.proc3825170.chain_616,blat.proc3825170.chain_617	13
scaffold_6	retained_exon	15362406	15362461	+	asmbl_47660	none	blat.proc3825168.chain_767	1	STRG.8284.1,blat.proc3825168.chain_768	2
scaffold_43	alt_donor	921	922	-	asmbl_43695,asmbl_43697	none	STRG.30047.2,STRG.30047.7	2	STRG.30047.5,STRG.30047.6	2
scaffold_3	alt_donor	7591038	7591039	+	asmbl_40170	none	blat.proc3825164.chain_3629	1	STRG.3351.1,blat.proc3825164.chain_3630	2
scaffold_14	starts_in_intron	15545257	15545257	+	asmbl_12617	none	Trinity_GG_27111_c0_g2_i1	1	STRG.17794.1,Trinity_GG_27111_c0_g2_i2	2
scaffold_18	retained_exon	3917647	3917798	-	asmbl_19782	none	blat.proc3825158.chain_2160	1	STRG.21203.3	1
scaffold_6	ends_in_intron	7848955	7848955	+	asmbl_47087	none	blat.proc3825168.chain_12	1	STRG.7669.1	1
scaffold_13	retained_intron	9254576	9254748	+	asmbl_11189	none	blat.proc3825172.chain_880	1	STRG.16187.1,blat.proc3825172.chain_879	2
scaffold_21	alternate_exon	1755935	1755990	-	asmbl_27424	none	STRG.23823.3	1	STRG.23823.1,STRG.23823.2,blat.proc3825160.chain_961,blat.proc3825160.chain_962,blat.proc3825160.chain_963	5
scaffold_5	retained_exon	7740676	7740966	+	asmbl_45505,asmbl_45507	none	STRG.6160.1,STRG.6160.2,blat.proc3825166.chain_2297	3	STRG.6160.3	1
scaffold_21	ends_in_intron	5275495	5275495	-	asmbl_27637	none	blat.proc3825160.chain_1194	1	STRG.24062.1,blat.proc3825160.chain_1193	2
scaffold_22	alt_acceptor	10682198	10682199	-	asmbl_29616	none	STRG.25415.1	1	STRG.25415.2	1
scaffold_14	alt_acceptor	12624812	12624813	-	asmbl_13580	none	STRG.17582.1,blat.proc3825156.chain_2422	2	STRG.17582.2,STRG.17582.3,STRG.17582.4,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2424	7
scaffold_19	alt_acceptor	12200137	12200138	-	asmbl_22465	none	STRG.22549.1,Trinity_GG_12531_c0_g1_i2	2	STRG.22549.2	1
scaffold_21	retained_exon	255962	256224	-	asmbl_27282,asmbl_27286	none	STRG.23725.5,blat.proc3825160.chain_809,blat.proc3825160.chain_811,blat.proc3825160.chain_812	4	blat.proc3825160.chain_807	1
scaffold_13	alternate_exon	1229234	1233344	+	asmbl_10546,asmbl_10551	none	STRG.15494.1,STRG.15494.2,Trinity_GG_25867_c1_g1_i2,Trinity_GG_25867_c3_g1_i1,blat.proc3825172.chain_311,blat.proc3825172.chain_314,blat.proc3825172.chain_316	7	STRG.15494.4	1
scaffold_6	spliced_intron	19074609	19074822	+	asmbl_47868,asmbl_47869,asmbl_47870,asmbl_47872,asmbl_47873	none	STRG.8575.1,STRG.8575.2,STRG.8575.3,Trinity_GG_21983_c0_g1_i1,Trinity_GG_21983_c0_g1_i4,Trinity_GG_21983_c0_g1_i5,Trinity_GG_21983_c0_g1_i7,blat.proc3825168.chain_948,blat.proc3825168.chain_949,blat.proc3825168.chain_950,blat.proc3825168.chain_952	11	Trinity_GG_21983_c0_g1_i6,blat.proc3825168.chain_951	2
scaffold_1	spliced_intron	12335370	12335520	-	asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_711,asmbl_712,asmbl_713,asmbl_714,asmbl_715,asmbl_716	none	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_831,blat.proc3825148.chain_833,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839,blat.proc3825148.chain_840,blat.proc3825148.chain_841,blat.proc3825148.chain_842	12	Trinity_GG_444_c0_g1_i30,blat.proc3825148.chain_826,blat.proc3825148.chain_827,blat.proc3825148.chain_828,blat.proc3825148.chain_832,blat.proc3825148.chain_834,blat.proc3825148.chain_836	7
scaffold_25	starts_in_intron	9939637	9939637	-	asmbl_34528	none	blat.proc3825162.chain_1156	1	STRG.27806.1,STRG.27806.2,blat.proc3825162.chain_1157	3
scaffold_9	starts_in_intron	1241329	1241329	+	asmbl_53809	none	Trinity_GG_23323_c0_g1_i2,blat.proc3825168.chain_3361	2	STRG.10831.1,blat.proc3825168.chain_3362	2
scaffold_3	alt_acceptor	12941544	12941545	-	asmbl_39241,asmbl_39243	none	STRG.3672.1,Trinity_GG_2010_c0_g1_i2,blat.proc3825148.chain_3545	3	STRG.3672.2	1
scaffold_18	spliced_intron	3105935	3106050	-	asmbl_19747	none	STRG.21154.2,blat.proc3825158.chain_2127	2	STRG.21154.1,Trinity_GG_11854_c1_g1_i3,blat.proc3825158.chain_2128	3
scaffold_16	alternate_exon	7026026	7026168	+	asmbl_16314	none	STRG.19381.1	1	STRG.19381.2	1
scaffold_25	alt_donor	9119255	9119256	+	asmbl_33786,asmbl_33787	none	STRG.27725.4,STRG.27725.6	2	STRG.27725.3,STRG.27725.5,blat.proc3825178.chain_859,blat.proc3825178.chain_862	4
scaffold_2	alt_acceptor	1258166	1258167	-	asmbl_22839	none	STRG.1587.1	1	blat.proc3825164.chain_1742	1
scaffold_10	skipped_exon	16258018	16259449	+	asmbl_3707,asmbl_3708	none	STRG.13106.2,Trinity_GG_24504_c0_g1_i2,blat.proc3825170.chain_1658,blat.proc3825170.chain_1659	4	STRG.13106.1,STRG.13106.3	2
scaffold_19	starts_in_intron	3207470	3207470	+	asmbl_21310	none	STRG.22012.3,blat.proc3825174.chain_3040	2	STRG.22012.1,blat.proc3825174.chain_3043,blat.proc3825174.chain_3044	3
scaffold_5	spliced_intron	10136208	10136286	+	asmbl_45658	none	STRG.6311.1,blat.proc3825166.chain_2503,blat.proc3825166.chain_2504	3	Trinity_GG_20745_c0_g1_i2,blat.proc3825166.chain_2502	2
scaffold_1	alternate_exon	15887343	15887422	-	asmbl_962	none	STRG.1118.1,blat.proc3825148.chain_1135,blat.proc3825148.chain_1136	3	STRG.1118.2,STRG.1118.3	2
scaffold_12	starts_in_intron	1987176	1987176	-	asmbl_8315	none	blat.proc3825154.chain_2982	1	STRG.14488.1,blat.proc3825154.chain_2979,blat.proc3825154.chain_2980,blat.proc3825154.chain_2981	4
scaffold_1	alt_acceptor	10504999	10505000	+	asmbl_2010	none	STRG.685.2	1	STRG.685.1,blat.proc3825164.chain_803	2
scaffold_8	ends_in_intron	1407906	1407906	-	asmbl_51703	none	blat.proc3825152.chain_2081	1	STRG.9763.1,blat.proc3825152.chain_2082,blat.proc3825152.chain_2083	3
scaffold_10	alt_acceptor	9465712	9465713	+	asmbl_3381	none	STRG.12689.1,blat.proc3825170.chain_1237	2	STRG.12689.2	1
scaffold_14	alt_acceptor	11665591	11665592	-	asmbl_13512,asmbl_13513	none	STRG.17511.1,blat.proc3825156.chain_2308,blat.proc3825156.chain_2309	3	STRG.17511.2,blat.proc3825156.chain_2307,blat.proc3825156.chain_2310	3
scaffold_20	starts_in_intron	10514666	10514666	-	asmbl_26108	none	Trinity_GG_13142_c0_g1_i1,blat.proc3825160.chain_649	2	STRG.23593.1,STRG.23593.2,blat.proc3825160.chain_651,blat.proc3825160.chain_652	4
scaffold_25	skipped_exon	6437223	6438668	+	asmbl_33630	none	STRG.27528.3	1	STRG.27528.1,STRG.27528.2,blat.proc3825178.chain_615,blat.proc3825178.chain_616	4
scaffold_6	ends_in_intron	6871163	6871163	+	asmbl_47011,asmbl_47012,asmbl_47013,asmbl_47015	none	blat.proc3825166.chain_3677,blat.proc3825166.chain_3678,blat.proc3825166.chain_3679,blat.proc3825166.chain_3681	4	STRG.7592.3,blat.proc3825166.chain_3680	2
scaffold_13	alt_acceptor	16138116	16138117	+	asmbl_11556	none	STRG.16653.2	1	STRG.16653.1	1
scaffold_7	skipped_exon	4498625	4501601	-	asmbl_50867	none	blat.proc3825152.chain_1302	1	STRG.8821.1,Trinity_GG_5038_c0_g1_i1,blat.proc3825152.chain_1303	3
scaffold_13	alt_acceptor	534832	534833	-	asmbl_9362,asmbl_9363	none	STRG.15447.2,STRG.15447.3	2	STRG.15447.1,Trinity_GG_8674_c0_g1_i1,Trinity_GG_8674_c0_g1_i2,blat.proc3825156.chain_326,blat.proc3825156.chain_327	5
scaffold_13	spliced_intron	8353056	8353540	+	asmbl_11129	none	STRG.16130.3	1	blat.proc3825172.chain_917	1
scaffold_8	spliced_intron	1801692	1801727	-	asmbl_51707	none	blat.proc3825168.chain_2303	1	STRG.9780.1,STRG.9780.2	2
scaffold_17	starts_in_intron	14395132	14395132	+	asmbl_19408	none	blat.proc3825174.chain_1807	1	STRG.20919.1,STRG.20919.2,STRG.20919.3,blat.proc3825174.chain_1808,blat.proc3825174.chain_1809,blat.proc3825174.chain_1810	6
scaffold_10	retained_intron	7672393	7673371	+	asmbl_3292	none	STRG.12556.2,Trinity_GG_24268_c0_g1_i5,blat.proc3825170.chain_1221	3	STRG.12556.3	1
scaffold_2	alt_donor	4774329	4774330	-	asmbl_23094	none	STRG.1897.2,blat.proc3825148.chain_1852	2	STRG.1897.1,blat.proc3825148.chain_1851	2
scaffold_28	retained_intron	2303296	2303372	-	asmbl_38036	none	STRG.29403.2	1	STRG.29403.1	1
scaffold_9	alt_acceptor	12314498	12314499	-	asmbl_55368	none	STRG.11554.2,blat.proc3825154.chain_33	2	STRG.11554.1,blat.proc3825154.chain_34	2
scaffold_13	retained_intron	16460036	16460320	-	asmbl_10303	none	STRG.16703.2,blat.proc3825156.chain_1486	2	STRG.16703.3,Trinity_GG_9330_c0_g1_i5,blat.proc3825156.chain_1488	3
scaffold_28	skipped_exon	6547550	6548299	-	asmbl_38354	none	STRG.29753.1	1	STRG.29753.2,STRG.29753.3	2
scaffold_10	starts_in_intron	17157572	17157572	-	asmbl_5036	none	STRG.13164.2	1	blat.proc3825154.chain_1756	1
scaffold_23	alt_acceptor	2207890	2207891	-	asmbl_30713	none	STRG.25698.5	1	STRG.25698.1,STRG.25698.2,STRG.25698.4	3
scaffold_13	spliced_intron	8715359	8715468	-	asmbl_9969	none	STRG.16141.2,blat.proc3825156.chain_1053	2	STRG.16141.1,blat.proc3825156.chain_1052	2
scaffold_17	retained_intron	13844846	13845553	-	asmbl_18380,asmbl_18382	none	STRG.20860.1,STRG.20860.3,blat.proc3825158.chain_1779	3	STRG.20860.2,blat.proc3825158.chain_1778	2
scaffold_4	retained_intron	4103311	4103635	+	asmbl_41230	none	STRG.4316.1,Trinity_GG_19673_c0_g1_i3,Trinity_GG_19673_c0_g1_i6,Trinity_GG_19673_c0_g1_i8,blat.proc3825166.chain_690,blat.proc3825166.chain_693,blat.proc3825166.chain_697	7	STRG.4316.2,blat.proc3825166.chain_696	2
scaffold_18	ends_in_intron	8375784	8375784	-	asmbl_20006	none	STRG.21509.4,blat.proc3825158.chain_2434	2	STRG.21509.2	1
scaffold_18	retained_intron	5984775	5985191	+	asmbl_20644,asmbl_20645	none	STRG.21368.1,blat.proc3825174.chain_2287	2	blat.proc3825174.chain_2289,blat.proc3825174.chain_2291,blat.proc3825174.chain_2293	3
scaffold_6	alt_donor	12117100	12117101	+	asmbl_47374	none	STRG.7985.4,Trinity_GG_21681_c0_g1_i5,blat.proc3825168.chain_431	3	Trinity_GG_21681_c0_g1_i3,blat.proc3825168.chain_428	2
scaffold_7	retained_intron	15595021	15595253	+	asmbl_50447	none	STRG.9560.1,blat.proc3825168.chain_2061	2	STRG.9560.3	1
scaffold_18	alternate_exon	13464132	13464236	+	asmbl_21022	none	Trinity_GG_29359_c1_g1_i3,blat.proc3825174.chain_2818	2	blat.proc3825174.chain_2819,blat.proc3825174.chain_2820	2
scaffold_27	alt_donor	7230282	7230283	+	asmbl_36435	none	blat.proc3825178.chain_2276	1	STRG.29080.2,blat.proc3825178.chain_2275	2
scaffold_5	ends_in_intron	17327595	17327595	+	asmbl_46165,asmbl_46167,asmbl_46168	none	blat.proc3825166.chain_3099,blat.proc3825166.chain_3101,blat.proc3825166.chain_3102	3	blat.proc3825166.chain_3098,blat.proc3825166.chain_3104	2
scaffold_3	alternate_exon	18323520	18323670	-	asmbl_39608	none	STRG.4034.1	1	STRG.4034.2	1
scaffold_25	spliced_intron	1437723	1437825	+	asmbl_33374	none	Trinity_GG_32303_c0_g1_i2,blat.proc3825178.chain_322	2	Trinity_GG_32303_c0_g1_i1,blat.proc3825178.chain_321	2
scaffold_4	starts_in_intron	12709370	12709370	+	asmbl_41742	none	blat.proc3825166.chain_1323	1	STRG.4912.1,STRG.4912.2,blat.proc3825166.chain_1319,blat.proc3825166.chain_1321,blat.proc3825166.chain_1322	5
scaffold_6	alt_acceptor	393446	393447	+	asmbl_46657	none	STRG.7104.1,blat.proc3825166.chain_3314	2	STRG.7104.2	1
scaffold_12	alt_acceptor	4951547	4951548	-	asmbl_8468	none	STRG.14666.2,blat.proc3825154.chain_3102	2	STRG.14666.1,blat.proc3825154.chain_3103,blat.proc3825154.chain_3104	3
scaffold_20	alternate_exon	6281400	6281474	+	asmbl_26657	none	STRG.23227.1	1	STRG.23227.2	1
scaffold_23	spliced_intron	2585757	2588165	-	asmbl_30744	none	STRG.25725.2,blat.proc3825160.chain_2777	2	STRG.25725.1,Trinity_GG_14322_c1_g1_i3,blat.proc3825160.chain_2774,blat.proc3825160.chain_2775	4
scaffold_5	retained_exon	2532794	2532892	-	asmbl_43889	none	STRG.5778.1,blat.proc3825150.chain_1992	2	STRG.5778.2	1
scaffold_6	alt_donor	600520	600521	-	asmbl_48047,asmbl_48048,asmbl_48051	none	STRG.7125.1,STRG.7125.4,STRG.7125.5,blat.proc3825150.chain_3224,blat.proc3825150.chain_3225	5	STRG.7125.2,STRG.7125.3	2
scaffold_1	starts_in_intron	11799730	11799730	-	asmbl_669	none	blat.proc3825148.chain_787	1	STRG.796.1,STRG.796.3,blat.proc3825148.chain_790,blat.proc3825148.chain_791	4
scaffold_5	alt_acceptor	13316688	13316689	-	asmbl_44537	none	STRG.6579.1	1	blat.proc3825150.chain_2763,blat.proc3825150.chain_2764,blat.proc3825150.chain_2766	3
scaffold_23	retained_intron	5861645	5861736	-	asmbl_30953	none	Trinity_GG_14540_c0_g1_i5,blat.proc3825160.chain_3152	2	STRG.25971.1,Trinity_GG_14540_c0_g1_i2,Trinity_GG_14540_c0_g1_i3,blat.proc3825160.chain_3150,blat.proc3825160.chain_3151	5
scaffold_4	alt_acceptor	4380555	4380556	-	asmbl_42508	none	STRG.4339.2	1	STRG.4339.1,STRG.4339.3,blat.proc3825150.chain_577	3
scaffold_20	retained_intron	1469616	1469860	-	asmbl_25573,asmbl_25574,asmbl_25575,asmbl_25577	none	STRG.22868.1,STRG.22868.3,Trinity_GG_12770_c1_g1_i7,blat.proc3825158.chain_3737,blat.proc3825158.chain_3740	5	blat.proc3825158.chain_3736,blat.proc3825158.chain_3738	2
scaffold_3	alt_donor	3315147	3315148	+	asmbl_39950	none	blat.proc3825148.chain_2937	1	blat.proc3825148.chain_2938	1
scaffold_11	starts_in_intron	13683474	13683474	+	asmbl_6073	none	blat.proc3825170.chain_2766	1	STRG.14225.1,STRG.14225.2,blat.proc3825170.chain_2767	3
scaffold_5	spliced_intron	939420	939502	-	asmbl_43794	none	STRG.5640.2	1	STRG.5640.1,Trinity_GG_3129_c0_g1_i1	2
scaffold_14	alt_acceptor	6062177	6062178	+	asmbl_12051	none	STRG.17065.2	1	STRG.17065.1,Trinity_GG_26693_c0_g1_i1,blat.proc3825172.chain_1809	3
scaffold_5	spliced_intron	14601535	14601964	-	asmbl_44605	none	STRG.6661.2,blat.proc3825150.chain_2806	2	STRG.6661.1,Trinity_GG_3719_c0_g1_i1,blat.proc3825150.chain_2805	3
scaffold_4	alt_donor	996978	996979	-	asmbl_42359	none	STRG.4157.2,blat.proc3825150.chain_290	2	STRG.4157.1,blat.proc3825150.chain_291	2
scaffold_15	ends_in_intron	11409151	11409151	-	asmbl_14504	none	Trinity_GG_10443_c5_g1_i1	1	STRG.18616.1,blat.proc3825156.chain_3449,blat.proc3825156.chain_3451	3
scaffold_14	alt_donor	10682298	10682299	-	asmbl_13437	none	STRG.17420.3	1	STRG.17420.1,STRG.17420.2,blat.proc3825156.chain_2252,blat.proc3825156.chain_2253	4
scaffold_4	alt_donor	18456227	18456228	-	asmbl_43368	none	STRG.5447.1,blat.proc3825150.chain_1609	2	STRG.5447.2,blat.proc3825150.chain_1608	2
scaffold_26	alt_acceptor	10121617	10121618	-	asmbl_35814	none	STRG.28530.2,Trinity_GG_15946_c0_g1_i3,blat.proc3825162.chain_1715	3	STRG.28530.1,Trinity_GG_15946_c0_g1_i11,Trinity_GG_15946_c0_g1_i5,blat.proc3825162.chain_1710,blat.proc3825162.chain_1714	5
scaffold_25	spliced_intron	9043482	9043880	-	asmbl_34475,asmbl_34478	none	STRG.27715.1,STRG.27715.2,blat.proc3825162.chain_1104,blat.proc3825162.chain_1106	4	STRG.27715.3,Trinity_GG_15563_c0_g1_i1,blat.proc3825162.chain_1105,blat.proc3825162.chain_1107,blat.proc3825162.chain_1110	5
scaffold_6	retained_intron	299110	299335	+	asmbl_46647,asmbl_46649	none	STRG.7091.1,STRG.7091.3,Trinity_GG_21228_c0_g1_i2,Trinity_GG_21228_c0_g1_i4,blat.proc3825166.chain_3317,blat.proc3825166.chain_3319	6	STRG.7091.2,Trinity_GG_21228_c0_g1_i3,blat.proc3825166.chain_3318	3
scaffold_6	alt_acceptor	17884058	17884059	-	asmbl_49215	none	STRG.8481.3	1	STRG.8481.1,blat.proc3825152.chain_880	2
scaffold_23	skipped_exon	8199021	8199981	+	asmbl_31766	none	blat.proc3825176.chain_3002	1	STRG.26129.1,STRG.26129.2,blat.proc3825176.chain_3003,blat.proc3825176.chain_3004	4
scaffold_20	alternate_exon	12073652	12074835	-	asmbl_26219	none	STRG.23706.2	1	Trinity_GG_13163_c0_g1_i1,blat.proc3825160.chain_689	2
scaffold_16	alt_acceptor	6144399	6144400	+	asmbl_16283,asmbl_16284	none	STRG.19354.1,STRG.19354.3	2	STRG.19354.4	1
scaffold_14	spliced_intron	3418982	3419012	+	asmbl_11947	none	STRG.16927.2	1	STRG.16927.1,Trinity_GG_26613_c0_g1_i1	2
scaffold_1	spliced_intron	13537305	13537508	-	asmbl_821,asmbl_822,asmbl_824	none	STRG.968.1,Trinity_GG_496_c0_g1_i2,Trinity_GG_496_c0_g1_i3,blat.proc3825148.chain_930,blat.proc3825148.chain_931,blat.proc3825148.chain_933	6	blat.proc3825148.chain_932	1
scaffold_22	starts_in_intron	8824242	8824242	+	asmbl_30291	none	Trinity_GG_31280_c0_g1_i1	1	STRG.25241.2,STRG.25241.4	2
scaffold_20	alt_donor	10521083	10521084	-	asmbl_26107	none	STRG.23593.2,blat.proc3825160.chain_652	2	STRG.23593.1,blat.proc3825160.chain_651	2
scaffold_9	alternate_exon	18387706	18389638	+	asmbl_54663,asmbl_54664	none	STRG.11879.1,STRG.11879.3	2	blat.proc3825170.chain_644	1
scaffold_11	spliced_intron	4759832	4760026	-	asmbl_6629,asmbl_6632,asmbl_6633	none	STRG.13575.1,blat.proc3825154.chain_2095,blat.proc3825154.chain_2096,blat.proc3825154.chain_2097	4	Trinity_GG_7573_c0_g2_i1,blat.proc3825154.chain_2099	2
scaffold_17	retained_intron	8951374	8951464	+	asmbl_19049	none	blat.proc3825174.chain_1375	1	STRG.20514.1,blat.proc3825174.chain_1376	2
scaffold_1	retained_intron	8789817	8789913	+	asmbl_1942	none	blat.proc3825164.chain_739	1	STRG.585.1,blat.proc3825164.chain_738	2
scaffold_4	alternate_exon	16872817	16872910	-	asmbl_43229,asmbl_43230	none	STRG.5273.3,STRG.5273.4	2	STRG.5273.2	1
scaffold_11	alt_donor	4688733	4688734	-	asmbl_6611,asmbl_6615	none	STRG.13564.4,STRG.13564.5	2	STRG.13564.1,STRG.13564.2,blat.proc3825154.chain_2144,blat.proc3825154.chain_2147	4
scaffold_19	alternate_exon	3550170	3550734	+	asmbl_21326,asmbl_21327	none	STRG.22045.2	1	STRG.22045.1	1
scaffold_1	alt_donor	19006429	19006430	+	asmbl_2574	none	STRG.1324.3	1	STRG.1324.1,STRG.1324.2	2
scaffold_5	retained_intron	189945	189976	+	asmbl_45086	none	STRG.5587.2,Trinity_GG_20359_c4_g1_i3,Trinity_GG_20359_c4_g1_i4,Trinity_GG_20359_c4_g1_i5,blat.proc3825166.chain_1850,blat.proc3825166.chain_1853	6	STRG.5587.1	1
scaffold_4	alternate_exon	9965556	9965812	-	asmbl_42830,asmbl_42832	none	STRG.4759.2,blat.proc3825150.chain_971,blat.proc3825150.chain_972	3	STRG.4759.1	1
scaffold_26	starts_in_intron	6663024	6663024	+	asmbl_35102	none	STRG.28377.3	1	STRG.28377.1,STRG.28377.2,blat.proc3825178.chain_1422,blat.proc3825178.chain_1424,blat.proc3825178.chain_1425	5
scaffold_7	spliced_intron	18619948	18620034	-	asmbl_51483,asmbl_51488,asmbl_51489	none	STRG.9681.1,STRG.9681.2,blat.proc3825152.chain_2027	3	STRG.9681.4,STRG.9681.5,blat.proc3825152.chain_2028,blat.proc3825152.chain_2029	4
scaffold_6	starts_in_intron	1488946	1488946	+	asmbl_46705	none	blat.proc3825166.chain_3413	1	blat.proc3825166.chain_3415	1
scaffold_17	alternate_exon	1289779	1291367	-	asmbl_17684	none	blat.proc3825158.chain_976	1	STRG.19964.3	1
scaffold_13	spliced_intron	6949076	6950695	-	asmbl_9820	none	STRG.15984.5	1	STRG.15984.1,STRG.15984.6,Trinity_GG_8951_c0_g1_i5	3
scaffold_4	alt_donor	7090983	7090984	+	asmbl_41458,asmbl_41461	none	STRG.4547.2,STRG.4547.4,blat.proc3825166.chain_1039	3	STRG.4547.3,blat.proc3825166.chain_1040	2
scaffold_21	skipped_exon	690867	693822	+	asmbl_28283	none	STRG.23756.1	1	STRG.23756.2	1
scaffold_24	starts_in_intron	6470693	6470693	+	asmbl_32324	none	Trinity_GG_32074_c0_g1_i2,blat.proc3825176.chain_3651	2	STRG.26702.1	1
scaffold_2	alternate_exon	13907298	13908091	-	asmbl_23537,asmbl_23538,asmbl_23539,asmbl_23540	none	STRG.2384.1,blat.proc3825148.chain_2389,blat.proc3825148.chain_2390,blat.proc3825148.chain_2391,blat.proc3825148.chain_2392	5	STRG.2384.2	1
scaffold_21	alt_acceptor	1156193	1156194	+	asmbl_28331	none	STRG.23791.2,Trinity_GG_30501_c0_g1_i2,blat.proc3825176.chain_1020	3	STRG.23791.1,Trinity_GG_30501_c0_g1_i1,blat.proc3825176.chain_1021	3
scaffold_22	retained_intron	485520	485599	+	asmbl_29855	none	blat.proc3825176.chain_1750	1	STRG.24694.1,Trinity_GG_30924_c0_g1_i3,blat.proc3825176.chain_1751,blat.proc3825176.chain_1752	4
scaffold_3	alternate_exon	6063494	6076985	-	asmbl_38894	none	STRG.3258.1,blat.proc3825148.chain_3130,blat.proc3825148.chain_3131	3	Trinity_GG_1775_c0_g1_i5,blat.proc3825148.chain_3129	2
scaffold_9	retained_intron	9688546	9688614	-	asmbl_55237,asmbl_55238	none	blat.proc3825152.chain_3615,blat.proc3825152.chain_3616	2	STRG.11346.3	1
scaffold_13	alt_donor	6299810	6299811	-	asmbl_9777	none	STRG.15926.2,blat.proc3825156.chain_821	2	STRG.15926.1,blat.proc3825156.chain_822	2
scaffold_1	alt_donor	3165320	3165321	+	asmbl_1572,asmbl_1573	none	STRG.199.1,STRG.199.2,Trinity_GG_17441_c0_g1_i2,Trinity_GG_17441_c0_g1_i3,blat.proc3825164.chain_289,blat.proc3825164.chain_290	6	STRG.199.3	1
scaffold_9	starts_in_intron	1538068	1538068	+	asmbl_53821	none	Trinity_GG_23333_c0_g1_i2	1	STRG.10845.1	1
scaffold_6	ends_in_intron	6872994	6872994	+	asmbl_47010	none	blat.proc3825166.chain_3682	1	blat.proc3825166.chain_3680	1
scaffold_1	spliced_intron	10951165	10951333	+	asmbl_2035,asmbl_2036,asmbl_2038,asmbl_2039,asmbl_2041	none	STRG.715.1,STRG.715.2,STRG.715.3,blat.proc3825164.chain_858,blat.proc3825164.chain_859,blat.proc3825164.chain_861,blat.proc3825164.chain_863,blat.proc3825164.chain_864	8	STRG.715.4,blat.proc3825164.chain_857,blat.proc3825164.chain_862	3
scaffold_25	alt_donor	2089251	2089252	-	asmbl_34059	none	STRG.27219.2	1	blat.proc3825162.chain_615	1
scaffold_1	retained_exon	13884593	13884636	-	asmbl_854,asmbl_857	none	STRG.996.3,blat.proc3825148.chain_1003	2	STRG.996.2,STRG.996.4,blat.proc3825148.chain_1005	3
scaffold_5	spliced_intron	8070415	8070604	+	asmbl_45523	none	STRG.6170.1,blat.proc3825166.chain_2347	2	STRG.6170.2,STRG.6170.3,Trinity_GG_20662_c0_g1_i2,blat.proc3825166.chain_2346	4
scaffold_9	starts_in_intron	878745	878745	-	asmbl_54811	none	blat.proc3825152.chain_3085	1	Trinity_GG_6013_c0_g2_i2,blat.proc3825152.chain_3083	2
scaffold_1	retained_intron	13433544	13433617	-	asmbl_802	none	STRG.960.2,Trinity_GG_494_c0_g1_i2,blat.proc3825148.chain_925	3	blat.proc3825148.chain_924	1
scaffold_9	alternate_exon	6744026	6745194	-	asmbl_55073	none	STRG.11188.3,blat.proc3825152.chain_3416	2	STRG.11188.1,STRG.11188.2,blat.proc3825152.chain_3414,blat.proc3825152.chain_3417	4
scaffold_9	spliced_intron	5220781	5220889	+	asmbl_54003,asmbl_54004,asmbl_54006	none	STRG.11103.1,STRG.11103.2,STRG.11103.3,blat.proc3825168.chain_3556	4	Trinity_GG_23456_c0_g1_i4,blat.proc3825168.chain_3555	2
scaffold_14	retained_intron	11572188	11574063	-	asmbl_13496,asmbl_13497	none	STRG.17499.1,STRG.17499.4,Trinity_GG_9808_c0_g1_i5,Trinity_GG_9808_c0_g2_i1,blat.proc3825156.chain_2305	5	blat.proc3825156.chain_2302	1
scaffold_22	retained_intron	9911206	9911454	-	asmbl_29573	none	STRG.25331.1,blat.proc3825160.chain_2501	2	Trinity_GG_14183_c0_g1_i2,blat.proc3825160.chain_2500	2
scaffold_26	spliced_intron	9315862	9315995	+	asmbl_35214,asmbl_35215,asmbl_35217,asmbl_35222,asmbl_35224	none	STRG.28487.1,STRG.28487.2,STRG.28487.3,blat.proc3825178.chain_1612,blat.proc3825178.chain_1616,blat.proc3825178.chain_1618	6	Trinity_GG_33078_c0_g1_i8,blat.proc3825178.chain_1611,blat.proc3825178.chain_1613,blat.proc3825178.chain_1614,blat.proc3825178.chain_1615	5
scaffold_23	spliced_intron	1682272	1682293	+	asmbl_31350	none	STRG.25650.2	1	Trinity_GG_31475_c0_g1_i1	1
scaffold_10	alternate_exon	17159054	17161111	-	asmbl_5037	none	STRG.13164.1,blat.proc3825154.chain_1757	2	STRG.13164.2,blat.proc3825154.chain_1754	2
scaffold_5	spliced_intron	15560627	15561046	-	asmbl_44704	none	blat.proc3825150.chain_2952	1	STRG.6751.1,blat.proc3825150.chain_2953,blat.proc3825150.chain_2954	3
scaffold_24	ends_in_intron	9097048	9097048	-	asmbl_33132	none	blat.proc3825162.chain_293	1	STRG.26952.1,blat.proc3825162.chain_294	2
scaffold_12	retained_exon	7171955	7172036	+	asmbl_7722	none	blat.proc3825170.chain_3303	1	STRG.14794.1	1
scaffold_10	alternate_exon	17058748	17058889	-	asmbl_5026	none	STRG.13149.4,blat.proc3825154.chain_1744	2	STRG.13149.2	1
scaffold_23	skipped_exon	7235072	7235671	+	asmbl_31684	none	STRG.26051.3	1	STRG.26051.1,STRG.26051.2	2
scaffold_6	skipped_exon	14593384	14594419	+	asmbl_47630	none	STRG.8222.1,blat.proc3825168.chain_720	2	STRG.8222.3	1
scaffold_3	retained_exon	14531538	14531594	-	asmbl_39392	none	STRG.3793.2,blat.proc3825148.chain_3745	2	STRG.3793.1,blat.proc3825148.chain_3746	2
scaffold_2	retained_intron	14219858	14219944	-	asmbl_23584	none	blat.proc3825148.chain_2357	1	STRG.2418.2,blat.proc3825148.chain_2354,blat.proc3825148.chain_2355,blat.proc3825148.chain_2358	4
scaffold_9	starts_in_intron	5667257	5667257	+	asmbl_54061	none	STRG.11140.2,Trinity_GG_23524_c1_g1_i1,blat.proc3825168.chain_3690	3	STRG.11140.1,blat.proc3825168.chain_3686,blat.proc3825168.chain_3689	3
scaffold_6	spliced_intron	14252463	14253506	-	asmbl_48997	none	blat.proc3825152.chain_592	1	STRG.8189.3,Trinity_GG_4646_c0_g1_i2,blat.proc3825152.chain_593	3
scaffold_14	alt_acceptor	11665989	11665990	-	asmbl_13512	none	STRG.17511.1,blat.proc3825156.chain_2309	2	STRG.17511.2,blat.proc3825156.chain_2307,blat.proc3825156.chain_2308	3
scaffold_4	retained_intron	14647836	14648056	-	asmbl_43061,asmbl_43062	none	STRG.5090.2,STRG.5090.3,Trinity_GG_2818_c0_g1_i4,blat.proc3825150.chain_1238,blat.proc3825150.chain_1239	5	STRG.5090.1,blat.proc3825150.chain_1236,blat.proc3825150.chain_1237	3
scaffold_28	alternate_exon	7306229	7306292	-	asmbl_38391	none	STRG.29803.2,Trinity_GG_16722_c0_g1_i1,blat.proc3825162.chain_2987	3	STRG.29803.3	1
scaffold_28	alt_donor	819755	819756	-	asmbl_37942	none	STRG.29295.1,blat.proc3825162.chain_2457	2	STRG.29295.2	1
scaffold_9	retained_intron	13297144	13297188	-	asmbl_55420	none	STRG.11628.4	1	STRG.11628.1,STRG.11628.3	2
scaffold_10	alternate_exon	13779419	13779487	-	asmbl_4935	none	blat.proc3825154.chain_1556	1	STRG.12980.1,blat.proc3825154.chain_1555	2
scaffold_7	spliced_intron	15245671	15246051	+	asmbl_50420	none	STRG.9540.3	1	STRG.9540.1,STRG.9540.2,blat.proc3825168.chain_2110,blat.proc3825168.chain_2111,blat.proc3825168.chain_2113	5
scaffold_15	retained_intron	400486	400509	+	asmbl_14974	none	STRG.17897.1,Trinity_GG_27154_c1_g1_i1,blat.proc3825172.chain_2639	3	STRG.17897.2	1
scaffold_5	spliced_intron	14124759	14124862	-	asmbl_44589	none	STRG.6623.1	1	blat.proc3825166.chain_2774	1
scaffold_3	alt_donor	7714350	7714351	-	asmbl_38981,asmbl_38982,asmbl_38983	none	blat.proc3825148.chain_3201,blat.proc3825148.chain_3202,blat.proc3825148.chain_3203	3	blat.proc3825148.chain_3197,blat.proc3825148.chain_3198,blat.proc3825148.chain_3199,blat.proc3825148.chain_3200,blat.proc3825148.chain_3204	5
scaffold_10	starts_in_intron	14542905	14542905	-	asmbl_4946	none	blat.proc3825154.chain_1599	1	STRG.13005.2,blat.proc3825154.chain_1600	2
scaffold_16	alt_acceptor	10745589	10745590	+	asmbl_16554	none	STRG.19627.3	1	STRG.19627.1,STRG.19627.2,Trinity_GG_28064_c0_g1_i1,Trinity_GG_28064_c0_g1_i2,blat.proc3825174.chain_551,blat.proc3825174.chain_552	6
scaffold_5	alt_acceptor	1064214	1064215	-	asmbl_43813	none	STRG.5657.1,Trinity_GG_3203_c0_g1_i4,blat.proc3825150.chain_1899	3	STRG.5657.2,Trinity_GG_3203_c0_g1_i2,blat.proc3825150.chain_1900	3
scaffold_3	alternate_exon	3252532	3265715	+	asmbl_39938	none	STRG.3072.6	1	STRG.3072.4,STRG.3072.5	2
scaffold_7	spliced_intron	289521	289547	+	asmbl_49551	none	STRG.8603.1	1	STRG.8603.2,Trinity_GG_22049_c0_g1_i1,Trinity_GG_22049_c0_g1_i3	3
scaffold_25	spliced_intron	9291594	9291672	+	asmbl_33803	none	STRG.27744.1,blat.proc3825178.chain_868	2	Trinity_GG_32639_c0_g1_i3,blat.proc3825178.chain_870	2
scaffold_4	alternate_exon	5079072	5079218	+	asmbl_41333	none	STRG.4398.1,Trinity_GG_19718_c0_g1_i2,blat.proc3825166.chain_774	3	STRG.4398.2,Trinity_GG_19718_c0_g1_i1,blat.proc3825166.chain_773	3
scaffold_5	ends_in_intron	13234672	13234672	+	asmbl_45861	none	Trinity_GG_20887_c0_g1_i1,blat.proc3825166.chain_2742	2	STRG.6565.1,STRG.6565.2,STRG.6565.3,blat.proc3825166.chain_2741,blat.proc3825166.chain_2743	5
scaffold_8	alt_acceptor	9378704	9378705	-	asmbl_52028	none	STRG.10202.4	1	STRG.10202.3,STRG.10202.5,STRG.10202.6,blat.proc3825152.chain_2461,blat.proc3825152.chain_2463,blat.proc3825152.chain_2464	6
scaffold_24	starts_in_intron	6449633	6449633	+	asmbl_32319	none	blat.proc3825176.chain_3612	1	STRG.26699.1,STRG.26699.2,blat.proc3825176.chain_3611,blat.proc3825176.chain_3613,blat.proc3825176.chain_3614,blat.proc3825176.chain_3615,blat.proc3825176.chain_3618,blat.proc3825176.chain_3620	8
scaffold_10	starts_in_intron	7092938	7092938	-	asmbl_4526	none	STRG.12529.1,blat.proc3825154.chain_1121	2	STRG.12529.2,blat.proc3825154.chain_1122	2
scaffold_23	starts_in_intron	10762981	10762981	-	asmbl_31157	none	blat.proc3825160.chain_3380	1	STRG.26268.1,STRG.26268.2,blat.proc3825160.chain_3381	3
scaffold_14	spliced_intron	11676499	11677256	-	asmbl_13518	none	STRG.17513.1,blat.proc3825156.chain_2349	2	STRG.17513.3,blat.proc3825156.chain_2348	2
scaffold_10	ends_in_intron	334489	334489	-	asmbl_3935	none	STRG.11918.3,blat.proc3825154.chain_444	2	STRG.11918.1,STRG.11918.2,blat.proc3825154.chain_442,blat.proc3825154.chain_443	4
scaffold_16	spliced_intron	8088050	8088183	-	asmbl_17225,asmbl_17230,asmbl_17231	none	STRG.19454.1,blat.proc3825158.chain_573,blat.proc3825158.chain_574	3	Trinity_GG_10909_c0_g1_i3,blat.proc3825158.chain_572	2
scaffold_20	alternate_exon	1511602	1512083	-	asmbl_25579	none	STRG.22870.2	1	STRG.22870.3	1
scaffold_11	skipped_exon	11571077	11573007	-	asmbl_7023	none	STRG.14084.2	1	STRG.14084.1	1
scaffold_16	skipped_exon	14485512	14487936	+	asmbl_16682	none	STRG.19826.2	1	STRG.19826.1	1
scaffold_10	starts_in_intron	8777660	8777660	+	asmbl_3334	none	blat.proc3825170.chain_1234	1	STRG.12630.1	1
scaffold_2	alt_donor	17717931	17717932	-	asmbl_23742	none	STRG.2669.1,blat.proc3825148.chain_2607	2	STRG.2669.2,blat.proc3825148.chain_2606	2
scaffold_8	retained_intron	13132405	13133848	-	asmbl_52266,asmbl_52268	none	STRG.10488.2,blat.proc3825152.chain_2750,blat.proc3825152.chain_2751	3	STRG.10488.1,blat.proc3825152.chain_2748	2
scaffold_8	ends_in_intron	16514415	16514415	-	asmbl_52412	none	blat.proc3825152.chain_2940	1	STRG.10629.1,STRG.10629.4,STRG.10629.5,blat.proc3825152.chain_2929,blat.proc3825152.chain_2931,blat.proc3825152.chain_2933,blat.proc3825152.chain_2936,blat.proc3825152.chain_2939	8
scaffold_7	alt_acceptor	4043329	4043330	-	asmbl_50845	none	STRG.8802.1,blat.proc3825152.chain_1277	2	STRG.8802.2	1
scaffold_18	alt_acceptor	9259474	9259475	-	asmbl_20061	none	STRG.21569.2,blat.proc3825158.chain_2485	2	STRG.21569.4,Trinity_GG_12060_c0_g1_i3,blat.proc3825158.chain_2486	3
scaffold_15	starts_in_intron	7183020	7183020	-	asmbl_14279	none	blat.proc3825156.chain_3044	1	STRG.18310.2,blat.proc3825156.chain_3043	2
scaffold_24	starts_in_intron	5929199	5929199	+	asmbl_32250	none	blat.proc3825176.chain_3561	1	STRG.26674.1,blat.proc3825176.chain_3560	2
scaffold_27	starts_in_intron	6706943	6706943	+	asmbl_36404	none	STRG.29044.3	1	STRG.29044.1,STRG.29044.2	2
scaffold_16	alt_donor	11395973	11395974	-	asmbl_17342	none	STRG.19673.6	1	STRG.19673.1,STRG.19673.3,STRG.19673.4,blat.proc3825158.chain_729	4
scaffold_10	alt_acceptor	17394058	17394059	+	asmbl_3772	none	STRG.13190.2	1	STRG.13190.1,STRG.13190.3	2
scaffold_25	alt_donor	3820182	3820183	-	asmbl_34160	none	Trinity_GG_15320_c0_g1_i1,blat.proc3825162.chain_700	2	Trinity_GG_15320_c0_g1_i3,blat.proc3825162.chain_699	2
scaffold_9	spliced_intron	16738922	16739205	-	asmbl_55621	none	STRG.11819.2,Trinity_GG_6538_c0_g1_i1,blat.proc3825154.chain_307	3	Trinity_GG_6538_c0_g1_i3,Trinity_GG_6538_c0_g1_i4,blat.proc3825154.chain_308,blat.proc3825154.chain_309	4
scaffold_15	retained_exon	15856434	15856547	+	asmbl_15819,asmbl_15820,asmbl_15821,asmbl_15823,asmbl_15824	none	STRG.18973.1,STRG.18973.2,STRG.18973.3,STRG.18973.5,Trinity_GG_27688_c0_g1_i10,Trinity_GG_27688_c0_g1_i12,Trinity_GG_27688_c0_g1_i5,Trinity_GG_27688_c0_g1_i8,blat.proc3825172.chain_3569,blat.proc3825172.chain_3570,blat.proc3825172.chain_3571,blat.proc3825172.chain_3576,blat.proc3825172.chain_3578	13	STRG.18973.4,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i7,blat.proc3825172.chain_3568,blat.proc3825172.chain_3574,blat.proc3825172.chain_3575,blat.proc3825172.chain_3577	7
scaffold_21	alt_acceptor	4108940	4108941	+	asmbl_28509,asmbl_28510	none	STRG.23987.2,STRG.23987.3	2	STRG.23987.1,blat.proc3825176.chain_1205,blat.proc3825176.chain_1207	3
scaffold_13	starts_in_intron	899038	899038	-	asmbl_9378	none	Trinity_GG_8651_c0_g1_i9,blat.proc3825156.chain_269	2	STRG.15470.1,STRG.15470.2,STRG.15470.3,STRG.15470.4,STRG.15470.5,STRG.15470.6,blat.proc3825156.chain_264,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271,blat.proc3825156.chain_272	12
scaffold_6	spliced_intron	3778396	3778632	+	asmbl_46851,asmbl_46853	none	STRG.7375.1,Trinity_GG_21375_c0_g1_i7,blat.proc3825166.chain_3621,blat.proc3825166.chain_3622,blat.proc3825166.chain_3625	5	STRG.7375.2,STRG.7375.3,blat.proc3825166.chain_3620,blat.proc3825166.chain_3623,blat.proc3825166.chain_3624,blat.proc3825166.chain_3627	6
scaffold_4	alternate_exon	5033934	5034615	-	asmbl_42551	none	Trinity_GG_2462_c0_g1_i1,blat.proc3825150.chain_630	2	STRG.4399.2	1
scaffold_15	alternate_exon	14634493	14634907	-	asmbl_14736	none	STRG.18877.4	1	blat.proc3825156.chain_3747	1
scaffold_3	ends_in_intron	19028946	19028946	-	asmbl_39639	none	blat.proc3825150.chain_275	1	blat.proc3825150.chain_276,blat.proc3825150.chain_277	2
scaffold_3	alt_donor	10628316	10628317	+	asmbl_40279	none	STRG.3513.1,blat.proc3825164.chain_3684	2	STRG.3513.2,STRG.3513.4,STRG.3513.5,STRG.3513.6,STRG.3513.7,blat.proc3825164.chain_3683,blat.proc3825164.chain_3685,blat.proc3825164.chain_3686,blat.proc3825164.chain_3687,blat.proc3825164.chain_3688,blat.proc3825164.chain_3689	11
scaffold_26	alt_acceptor	9834927	9834928	-	asmbl_35792	none	STRG.28522.1,blat.proc3825162.chain_1631	2	STRG.28522.2,blat.proc3825162.chain_1630	2
scaffold_12	alternate_exon	15440737	15440816	-	asmbl_9084,asmbl_9087	none	STRG.15351.2,Trinity_GG_8614_c0_g1_i2,blat.proc3825156.chain_207,blat.proc3825156.chain_209	4	STRG.15351.1,blat.proc3825156.chain_208	2
scaffold_22	alt_donor	8824079	8824080	+	asmbl_30290	none	STRG.25241.4	1	STRG.25241.2	1
scaffold_10	retained_exon	5259104	5259245	-	asmbl_4351	none	STRG.12356.3,blat.proc3825154.chain_919	2	STRG.12356.1,blat.proc3825154.chain_920	2
scaffold_23	alternate_exon	800997	808238	-	asmbl_30609,asmbl_30610	none	STRG.25583.1,STRG.25583.3	2	Trinity_GG_14309_c0_g1_i7,blat.proc3825160.chain_2756	2
scaffold_5	spliced_intron	2234179	2234653	-	asmbl_43878,asmbl_43879	none	STRG.5760.1,blat.proc3825150.chain_1995	2	blat.proc3825150.chain_1993,blat.proc3825150.chain_1994,blat.proc3825150.chain_1996	3
scaffold_23	ends_in_intron	4100043	4100043	-	asmbl_30834	none	blat.proc3825160.chain_3029	1	STRG.25826.3,blat.proc3825160.chain_3031,blat.proc3825160.chain_3032	3
scaffold_8	starts_in_intron	15704057	15704057	-	asmbl_52342	none	blat.proc3825152.chain_2796	1	STRG.10578.1,blat.proc3825152.chain_2797	2
scaffold_17	retained_exon	5323681	5323701	+	asmbl_18817	none	STRG.20256.2,blat.proc3825174.chain_1017	2	STRG.20256.1,blat.proc3825174.chain_1016	2
scaffold_5	alt_donor	9335560	9335561	-	asmbl_44273	none	Trinity_GG_3478_c0_g1_i1,blat.proc3825150.chain_2382	2	STRG.6258.1	1
scaffold_2	retained_intron	5196150	5196244	-	asmbl_23141	none	STRG.1937.1,blat.proc3825148.chain_1952	2	STRG.1937.2,blat.proc3825148.chain_1953	2
scaffold_19	spliced_intron	12482434	12483861	-	asmbl_22500	none	STRG.22588.1,blat.proc3825158.chain_3387	2	Trinity_GG_12581_c0_g1_i1,Trinity_GG_12581_c0_g1_i2,blat.proc3825158.chain_3385,blat.proc3825158.chain_3386	4
scaffold_2	spliced_intron	13330421	13330492	+	asmbl_24831,asmbl_24834	none	STRG.2344.3,STRG.2344.5,blat.proc3825164.chain_2553	3	STRG.2344.1,STRG.2344.2,blat.proc3825164.chain_2554,blat.proc3825164.chain_2555	4
scaffold_3	retained_intron	14301647	14301823	-	asmbl_39347	none	STRG.3770.2,Trinity_GG_2050_c0_g1_i1,blat.proc3825148.chain_3621	3	STRG.3770.1,Trinity_GG_2050_c0_g1_i3,blat.proc3825148.chain_3622	3
scaffold_11	starts_in_intron	9083718	9083718	-	asmbl_6911	none	blat.proc3825154.chain_2463	1	STRG.13943.1,blat.proc3825154.chain_2464	2
scaffold_11	retained_intron	14533655	14533915	+	asmbl_6091	none	Trinity_GG_25124_c0_g1_i4,blat.proc3825170.chain_2708	2	STRG.14252.1,STRG.14252.2,STRG.14252.3,Trinity_GG_25124_c0_g1_i1,Trinity_GG_25124_c0_g1_i3,blat.proc3825170.chain_2707,blat.proc3825170.chain_2709,blat.proc3825170.chain_2710	8
scaffold_14	retained_intron	6553331	6553641	-	asmbl_13141	none	STRG.17104.1	1	STRG.17104.2	1
scaffold_3	starts_in_intron	15927829	15927829	-	asmbl_39460	none	blat.proc3825148.chain_3694	1	STRG.3873.1,blat.proc3825148.chain_3693,blat.proc3825148.chain_3697	3
scaffold_4	starts_in_intron	19054199	19054199	-	asmbl_43407	none	blat.proc3825150.chain_1701	1	STRG.5498.1	1
scaffold_25	skipped_exon	8705312	8707661	+	asmbl_33752,asmbl_33753	none	STRG.27702.1,Trinity_GG_32580_c0_g1_i11,blat.proc3825178.chain_763,blat.proc3825178.chain_768	4	STRG.27702.3,blat.proc3825178.chain_762	2
scaffold_13	retained_intron	6396903	6397183	+	asmbl_10927	none	Trinity_GG_26055_c0_g1_i2,blat.proc3825172.chain_653	2	STRG.15929.2,STRG.15929.3,Trinity_GG_26055_c0_g1_i1,Trinity_GG_26055_c0_g1_i4,Trinity_GG_26055_c0_g1_i5,blat.proc3825172.chain_652,blat.proc3825172.chain_654,blat.proc3825172.chain_655	8
scaffold_25	starts_in_intron	5607355	5607355	-	asmbl_34266	none	Trinity_GG_15406_c0_g1_i2,blat.proc3825162.chain_836	2	STRG.27458.1,STRG.27458.2,Trinity_GG_15406_c0_g1_i1,blat.proc3825162.chain_837	4
scaffold_3	spliced_intron	3322168	3322250	-	asmbl_38772,asmbl_38774,asmbl_38776	none	STRG.3080.1,STRG.3080.2,blat.proc3825148.chain_2945,blat.proc3825148.chain_2946	4	blat.proc3825148.chain_2947	1
scaffold_6	retained_exon	9151246	9151291	-	asmbl_48609,asmbl_48611	none	STRG.7792.3,blat.proc3825152.chain_168	2	STRG.7792.1,STRG.7792.2,blat.proc3825152.chain_167	3
scaffold_1	retained_intron	12462400	12462824	-	asmbl_721	none	STRG.867.4	1	STRG.867.2,STRG.867.3,STRG.867.5	3
scaffold_28	retained_intron	295957	296054	+	asmbl_37272	none	blat.proc3825178.chain_2491	1	STRG.29263.1,STRG.29263.2,STRG.29263.3,blat.proc3825178.chain_2488,blat.proc3825178.chain_2489,blat.proc3825178.chain_2490,blat.proc3825178.chain_2492	7
scaffold_27	skipped_exon	144985	146719	-	asmbl_36646	none	STRG.28551.2	1	Trinity_GG_15968_c0_g1_i2,blat.proc3825162.chain_1769	2
scaffold_7	starts_in_intron	18393169	18393169	-	asmbl_51478	none	Trinity_GG_5439_c0_g1_i9,blat.proc3825152.chain_2019	2	STRG.9670.1,STRG.9670.2,STRG.9670.3,STRG.9670.4,STRG.9670.5,STRG.9670.6,STRG.9670.7,Trinity_GG_5439_c0_g1_i1,Trinity_GG_5439_c0_g1_i10,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i3,Trinity_GG_5439_c0_g1_i7,blat.proc3825152.chain_2012,blat.proc3825152.chain_2013,blat.proc3825152.chain_2014,blat.proc3825152.chain_2015,blat.proc3825152.chain_2016,blat.proc3825152.chain_2017,blat.proc3825152.chain_2018,blat.proc3825152.chain_2020,blat.proc3825152.chain_2021	21
scaffold_1	ends_in_intron	7293183	7293183	-	asmbl_429	none	Trinity_GG_240_c2_g1_i1,blat.proc3825148.chain_440	2	STRG.521.1,STRG.521.2,blat.proc3825148.chain_437,blat.proc3825148.chain_438	4
scaffold_15	spliced_intron	7437135	7437261	-	asmbl_14298	none	STRG.18342.2,blat.proc3825156.chain_3191	2	STRG.18342.3,Trinity_GG_10314_c1_g1_i2,blat.proc3825156.chain_3190	3
scaffold_4	alt_acceptor	1062802	1062803	-	asmbl_42361	none	STRG.4163.1,Trinity_GG_2305_c0_g1_i1,blat.proc3825150.chain_372	3	STRG.4163.2	1
scaffold_13	starts_in_intron	11566839	11566839	+	asmbl_11279	none	Trinity_GG_26230_c0_g1_i1,blat.proc3825172.chain_1006	2	STRG.16305.1,blat.proc3825172.chain_1007	2
scaffold_9	retained_intron	3912783	3912902	-	asmbl_54951,asmbl_54953	none	STRG.11010.3,Trinity_GG_6105_c0_g1_i1,blat.proc3825152.chain_3263	3	STRG.11010.1,STRG.11010.2,Trinity_GG_6105_c0_g1_i2,blat.proc3825152.chain_3262	4
scaffold_7	alt_acceptor	18784050	18784051	+	asmbl_50535	none	STRG.9696.1	1	STRG.9696.2,STRG.9696.4	2
scaffold_8	ends_in_intron	4288944	4288944	+	asmbl_52827	none	STRG.9909.1	1	STRG.9909.2,blat.proc3825168.chain_2464	2
scaffold_15	starts_in_intron	2563697	2563697	+	asmbl_15067,asmbl_15068	none	STRG.18045.4,Trinity_GG_27217_c0_g1_i9	2	STRG.18045.1,STRG.18045.3	2
scaffold_8	alternate_exon	2686894	2690100	+	asmbl_52735	none	STRG.9810.2,Trinity_GG_22721_c1_g1_i2,blat.proc3825168.chain_2278	3	STRG.9810.3	1
scaffold_3	starts_in_intron	9800589	9800589	+	asmbl_40235	none	STRG.3457.3	1	STRG.3457.2	1
scaffold_16	spliced_intron	14552847	14553116	+	asmbl_16685,asmbl_16686,asmbl_16690	none	STRG.19851.1,STRG.19851.2,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i3,blat.proc3825174.chain_729,blat.proc3825174.chain_730	6	STRG.19851.3,Trinity_GG_28180_c0_g1_i1,Trinity_GG_28180_c0_g1_i6,blat.proc3825174.chain_731,blat.proc3825174.chain_732	5
scaffold_16	retained_intron	10449967	10450337	+	asmbl_16537	none	Trinity_GG_28027_c0_g1_i3,blat.proc3825174.chain_485	2	STRG.19614.1,STRG.19614.2,STRG.19614.3,STRG.19614.4,Trinity_GG_28027_c0_g1_i1,blat.proc3825174.chain_484,blat.proc3825174.chain_486,blat.proc3825174.chain_488,blat.proc3825174.chain_489	9
scaffold_2	ends_in_intron	5710392	5710392	-	asmbl_23160	none	blat.proc3825148.chain_1860	1	STRG.1958.1,blat.proc3825148.chain_1858	2
scaffold_15	ends_in_intron	13562807	13562807	-	asmbl_14643	none	blat.proc3825156.chain_3628	1	STRG.18786.1,STRG.18786.2,STRG.18786.3,blat.proc3825156.chain_3629,blat.proc3825156.chain_3630	5
scaffold_4	retained_intron	5653074	5653166	-	asmbl_42617	none	blat.proc3825150.chain_657	1	STRG.4472.1,STRG.4472.2,STRG.4472.3,STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_658,blat.proc3825150.chain_659,blat.proc3825150.chain_662,blat.proc3825150.chain_663,blat.proc3825150.chain_666	11
scaffold_1	retained_exon	6830890	6830974	-	asmbl_383	none	STRG.474.2,blat.proc3825148.chain_463	2	STRG.474.3	1
scaffold_6	alt_acceptor	10143388	10143389	-	asmbl_48659	none	STRG.7849.1,blat.proc3825152.chain_223	2	STRG.7849.2	1
scaffold_5	alt_acceptor	15620501	15620502	-	asmbl_44707,asmbl_44708	none	STRG.6750.1,blat.proc3825150.chain_2933,blat.proc3825150.chain_2934	3	STRG.6750.2	1
scaffold_13	spliced_intron	16284302	16284439	+	asmbl_11569	none	STRG.16682.2,blat.proc3825172.chain_1434	2	STRG.16682.1,Trinity_GG_26480_c0_g1_i2,blat.proc3825172.chain_1433	3
scaffold_5	spliced_intron	10853360	10853477	+	asmbl_45699,asmbl_45701,asmbl_45702	none	STRG.6368.1,blat.proc3825166.chain_2520,blat.proc3825166.chain_2522,blat.proc3825166.chain_2525	4	blat.proc3825166.chain_2523	1
scaffold_1	alternate_exon	18488186	18488232	-	asmbl_1117	none	STRG.1298.8	1	STRG.1298.2,STRG.1298.3,STRG.1298.6,blat.proc3825148.chain_1319,blat.proc3825148.chain_1320,blat.proc3825148.chain_1321,blat.proc3825148.chain_1322	7
scaffold_23	starts_in_intron	10975950	10975950	+	asmbl_31903	none	STRG.26307.4	1	STRG.26307.1,blat.proc3825176.chain_3177,blat.proc3825176.chain_3182,blat.proc3825176.chain_3183,blat.proc3825176.chain_3184	5
scaffold_14	alt_acceptor	1613979	1613980	+	asmbl_11830,asmbl_11831,asmbl_11832	none	STRG.16804.1,STRG.16804.2,STRG.16804.3,Trinity_GG_26566_c0_g2_i2,blat.proc3825172.chain_1587,blat.proc3825172.chain_1588	6	STRG.16804.4,Trinity_GG_26566_c0_g2_i4,blat.proc3825172.chain_1589	3
scaffold_15	retained_intron	670210	670293	-	asmbl_13940	none	STRG.17932.2,blat.proc3825156.chain_2723	2	STRG.17932.3,blat.proc3825156.chain_2724	2
scaffold_18	starts_in_intron	3606490	3606490	+	asmbl_20463	none	STRG.21178.4	1	STRG.21178.1,STRG.21178.2,STRG.21178.3,blat.proc3825174.chain_2119	4
scaffold_25	spliced_intron	337611	337824	+	asmbl_33326	none	STRG.27077.1	1	STRG.27077.3	1
scaffold_16	starts_in_intron	3778315	3778315	+	asmbl_16152	none	blat.proc3825174.chain_94	1	STRG.19187.1,blat.proc3825174.chain_92	2
scaffold_26	alt_acceptor	6350817	6350818	-	asmbl_35685	none	STRG.28335.1	1	STRG.28335.2,STRG.28335.3,STRG.28335.5,STRG.28335.6,blat.proc3825162.chain_1570	5
scaffold_8	retained_intron	12124410	12124600	-	asmbl_52184	none	STRG.10404.2,blat.proc3825152.chain_2613	2	STRG.10404.1,blat.proc3825152.chain_2614	2
scaffold_19	retained_intron	1038554	1038594	+	asmbl_21231	none	Trinity_GG_29383_c0_g1_i1,blat.proc3825174.chain_2868	2	STRG.21896.2	1
scaffold_16	skipped_exon	6144352	6144917	+	asmbl_16278,asmbl_16279,asmbl_16280,asmbl_16281	none	STRG.19354.2,blat.proc3825174.chain_141,blat.proc3825174.chain_143,blat.proc3825174.chain_144,blat.proc3825174.chain_145	5	STRG.19354.1,STRG.19354.3	2
scaffold_7	alt_acceptor	1456138	1456139	-	asmbl_50740	none	STRG.8644.2	1	STRG.8644.1,blat.proc3825152.chain_1144	2
scaffold_6	retained_intron	3056924	3057109	+	asmbl_46802	none	blat.proc3825166.chain_3519	1	STRG.7319.1,STRG.7319.2,STRG.7319.3,blat.proc3825166.chain_3518,blat.proc3825166.chain_3520,blat.proc3825166.chain_3521,blat.proc3825166.chain_3522,blat.proc3825166.chain_3523,blat.proc3825166.chain_3524	9
scaffold_5	retained_exon	10421235	10421280	-	asmbl_44357	none	STRG.6337.1,blat.proc3825150.chain_2482	2	STRG.6337.2,blat.proc3825150.chain_2483	2
scaffold_17	alternate_exon	11035476	11036284	-	asmbl_18264	none	blat.proc3825158.chain_1638	1	STRG.20664.1	1
scaffold_3	alt_donor	11795534	11795535	-	asmbl_39191	none	STRG.3614.1,Trinity_GG_1970_c0_g1_i2,blat.proc3825148.chain_3486	3	STRG.3614.2,Trinity_GG_1970_c0_g1_i1,blat.proc3825148.chain_3487	3
scaffold_16	retained_intron	10447527	10448352	+	asmbl_16534,asmbl_16535	none	STRG.19614.1,STRG.19614.3,Trinity_GG_28027_c0_g1_i5,blat.proc3825174.chain_487	4	STRG.19614.2,blat.proc3825174.chain_484	2
scaffold_25	retained_intron	6066072	6066195	-	asmbl_34320,asmbl_34322	none	STRG.27490.3,blat.proc3825162.chain_846	2	STRG.27490.1,STRG.27490.2,blat.proc3825162.chain_845,blat.proc3825162.chain_847,blat.proc3825162.chain_848,blat.proc3825162.chain_849,blat.proc3825162.chain_850	7
scaffold_10	retained_intron	11907708	11908477	+	asmbl_3502,asmbl_3504,asmbl_3505	none	STRG.12828.2,Trinity_GG_24345_c0_g1_i3,blat.proc3825170.chain_1352,blat.proc3825170.chain_1353	4	STRG.12828.1,Trinity_GG_24345_c0_g1_i2,Trinity_GG_24345_c0_g1_i4,blat.proc3825170.chain_1354,blat.proc3825170.chain_1355	5
scaffold_2	alt_acceptor	11474973	11474974	-	asmbl_23452,asmbl_23453	none	STRG.2267.1,STRG.2267.2,Trinity_GG_1239_c0_g1_i1,Trinity_GG_1239_c0_g1_i2,blat.proc3825148.chain_2244,blat.proc3825148.chain_2246	6	STRG.2267.3,Trinity_GG_1239_c0_g1_i3,blat.proc3825148.chain_2245	3
scaffold_24	ends_in_intron	6444753	6444753	+	asmbl_32314	none	blat.proc3825176.chain_3619	1	STRG.26699.1,STRG.26699.2,blat.proc3825176.chain_3610,blat.proc3825176.chain_3613,blat.proc3825176.chain_3617,blat.proc3825176.chain_3618	6
scaffold_11	alt_acceptor	1156396	1156397	+	asmbl_5326	none	Trinity_GG_24584_c0_g1_i1,blat.proc3825170.chain_1778	2	STRG.13311.1,Trinity_GG_24584_c0_g1_i2,Trinity_GG_24584_c0_g1_i5,blat.proc3825170.chain_1776,blat.proc3825170.chain_1777	5
scaffold_10	alt_donor	6615820	6615821	+	asmbl_3242	none	STRG.12482.1	1	blat.proc3825170.chain_1122	1
scaffold_16	retained_intron	6216174	6216261	-	asmbl_17153	none	blat.proc3825158.chain_504	1	STRG.19375.1,blat.proc3825158.chain_505	2
scaffold_2	starts_in_intron	14221149	14221149	-	asmbl_23585	none	blat.proc3825148.chain_2356	1	blat.proc3825148.chain_2357,blat.proc3825148.chain_2358	2
scaffold_12	alt_acceptor	8891889	8891890	+	asmbl_7835	none	STRG.14897.2	1	STRG.14897.1,STRG.14897.3,Trinity_GG_25554_c0_g1_i2,Trinity_GG_25554_c0_g1_i3,blat.proc3825170.chain_3471,blat.proc3825170.chain_3473	6
scaffold_9	ends_in_intron	13607795	13607795	+	asmbl_54507	none	blat.proc3825170.chain_453	1	STRG.11647.1,STRG.11647.3,STRG.11647.4,blat.proc3825170.chain_454,blat.proc3825170.chain_456	5
scaffold_9	alternate_exon	13606668	13607404	+	asmbl_54506,asmbl_54507	none	STRG.11647.3,blat.proc3825170.chain_453,blat.proc3825170.chain_454	3	STRG.11647.1,blat.proc3825170.chain_456	2
scaffold_3	retained_intron	4282597	4282658	+	asmbl_39993	none	STRG.3123.1	1	STRG.3123.2	1
scaffold_17	skipped_exon	7849474	7850188	+	asmbl_18925	none	STRG.20411.3	1	STRG.20411.1	1
scaffold_23	retained_exon	2207677	2207796	-	asmbl_30712	none	STRG.25698.2	1	STRG.25698.3,STRG.25698.6	2
scaffold_5	spliced_intron	14261375	14261517	+	asmbl_45913,asmbl_45914,asmbl_45915,asmbl_45916,asmbl_45919,asmbl_45920,asmbl_45921,asmbl_45922,asmbl_45923	none	STRG.6638.1,STRG.6638.2,STRG.6638.3,STRG.6638.4,Trinity_GG_20907_c0_g1_i8,blat.proc3825166.chain_2783,blat.proc3825166.chain_2785,blat.proc3825166.chain_2786,blat.proc3825166.chain_2787,blat.proc3825166.chain_2788,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	12	Trinity_GG_20907_c0_g1_i4,blat.proc3825166.chain_2784	2
scaffold_17	retained_intron	8871672	8871801	-	asmbl_18129	none	STRG.20504.3,blat.proc3825158.chain_1540	2	STRG.20504.1,STRG.20504.2,blat.proc3825158.chain_1541	3
scaffold_5	alt_donor	4856791	4856792	-	asmbl_44017,asmbl_44019,asmbl_44020	none	STRG.5945.1,blat.proc3825150.chain_2145,blat.proc3825150.chain_2146	3	STRG.5945.2,blat.proc3825150.chain_2144	2
scaffold_11	alt_acceptor	8790313	8790314	-	asmbl_6877	none	STRG.13904.1	1	STRG.13904.2,STRG.13904.3,blat.proc3825170.chain_2482,blat.proc3825170.chain_2483,blat.proc3825170.chain_2484	5
scaffold_6	starts_in_intron	12116759	12116759	+	asmbl_47374	none	STRG.7985.4	1	STRG.7985.1,STRG.7985.2,blat.proc3825168.chain_430	3
scaffold_25	alt_acceptor	8442376	8442377	-	asmbl_34444	none	STRG.27676.2	1	STRG.27676.1,blat.proc3825162.chain_989	2
scaffold_19	retained_intron	3207630	3207699	+	asmbl_21310	none	STRG.22012.3,blat.proc3825174.chain_3040	2	STRG.22012.2,blat.proc3825174.chain_3042	2
scaffold_3	retained_intron	6659645	6660509	+	asmbl_40104,asmbl_40107,asmbl_40109,asmbl_40112,asmbl_40113,asmbl_40114,asmbl_40115	none	STRG.3295.3,Trinity_GG_19180_c0_g1_i4,blat.proc3825164.chain_3561,blat.proc3825164.chain_3564,blat.proc3825164.chain_3566,blat.proc3825164.chain_3567,blat.proc3825164.chain_3570,blat.proc3825164.chain_3571	8	STRG.3295.4,blat.proc3825164.chain_3560,blat.proc3825164.chain_3569	3
scaffold_8	retained_intron	5554249	5554404	-	asmbl_51838,asmbl_51839	none	blat.proc3825152.chain_2233,blat.proc3825152.chain_2236	2	STRG.9976.1,blat.proc3825152.chain_2232,blat.proc3825152.chain_2235	3
scaffold_10	alt_acceptor	10780277	10780278	+	asmbl_3433	none	STRG.12765.2	1	STRG.12765.1,STRG.12765.3	2
scaffold_26	retained_intron	9773180	9773315	+	asmbl_35256,asmbl_35258,asmbl_35259	none	STRG.28516.4,Trinity_GG_33086_c0_g1_i6,blat.proc3825178.chain_1639,blat.proc3825178.chain_1641	4	STRG.28516.1,STRG.28516.2,STRG.28516.3,STRG.28516.5,STRG.28516.6,STRG.28516.7,blat.proc3825178.chain_1636,blat.proc3825178.chain_1637,blat.proc3825178.chain_1638,blat.proc3825178.chain_1640,blat.proc3825178.chain_1642	11
scaffold_25	alternate_exon	3293928	3297044	-	asmbl_34120	none	STRG.27284.2,blat.proc3825162.chain_656	2	STRG.27284.4,STRG.27284.5	2
scaffold_2	retained_intron	14278868	14278991	+	asmbl_24904,asmbl_24906	none	blat.proc3825164.chain_2592,blat.proc3825164.chain_2595	2	blat.proc3825164.chain_2594	1
scaffold_6	skipped_exon	17645170	17647067	-	asmbl_49194	none	STRG.8458.1	1	STRG.8458.2	1
scaffold_8	alternate_exon	11830363	11830719	+	asmbl_53271	none	Trinity_GG_23113_c0_g1_i1,blat.proc3825168.chain_2981	2	STRG.10387.1	1
scaffold_15	spliced_intron	15176771	15176878	+	asmbl_15725,asmbl_15727,asmbl_15728,asmbl_15729,asmbl_15733,asmbl_15736,asmbl_15737,asmbl_15739,asmbl_15740	none	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3520,blat.proc3825172.chain_3521,blat.proc3825172.chain_3522,blat.proc3825172.chain_3525,blat.proc3825172.chain_3528,blat.proc3825172.chain_3530,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535,blat.proc3825172.chain_3536	13	blat.proc3825172.chain_3519,blat.proc3825172.chain_3524,blat.proc3825172.chain_3529	3
scaffold_7	starts_in_intron	9738103	9738103	-	asmbl_51061	none	blat.proc3825152.chain_1528	1	STRG.9165.1,blat.proc3825152.chain_1529	2
scaffold_13	retained_intron	2271676	2271815	-	asmbl_9437,asmbl_9438,asmbl_9440,asmbl_9441,asmbl_9442,asmbl_9443,asmbl_9449	none	STRG.15548.3,STRG.15548.4,Trinity_GG_8695_c0_g1_i10,Trinity_GG_8695_c0_g1_i11,Trinity_GG_8695_c0_g1_i3,Trinity_GG_8695_c0_g1_i4,Trinity_GG_8695_c0_g1_i5,blat.proc3825156.chain_390,blat.proc3825156.chain_391,blat.proc3825156.chain_393,blat.proc3825156.chain_394,blat.proc3825156.chain_397,blat.proc3825156.chain_400	13	STRG.15548.1,STRG.15548.2,STRG.15548.5,blat.proc3825156.chain_392,blat.proc3825156.chain_395,blat.proc3825156.chain_398,blat.proc3825156.chain_399	7
scaffold_16	retained_exon	9625470	9625484	-	asmbl_17289	none	STRG.19566.1,blat.proc3825158.chain_702	2	STRG.19566.2,blat.proc3825158.chain_701	2
scaffold_18	retained_exon	7169511	7169613	+	asmbl_20708	none	STRG.21415.1,Trinity_GG_29107_c0_g1_i3,blat.proc3825174.chain_2388	3	Trinity_GG_29107_c0_g1_i4,blat.proc3825174.chain_2389	2
scaffold_12	alt_donor	14171917	14171918	+	asmbl_8064	none	STRG.15252.2,blat.proc3825172.chain_3	2	STRG.15252.1,blat.proc3825172.chain_2,blat.proc3825172.chain_4,blat.proc3825172.chain_6	4
scaffold_26	retained_intron	9083581	9083738	-	asmbl_35765	none	STRG.28473.1,blat.proc3825162.chain_1682	2	STRG.28473.2,STRG.28473.4,blat.proc3825162.chain_1681	3
scaffold_18	alt_donor	6810145	6810146	+	asmbl_20682,asmbl_20683	none	STRG.21392.2,STRG.21392.4	2	STRG.21392.1	1
scaffold_17	ends_in_intron	9942949	9942949	+	asmbl_19130	none	Trinity_GG_28597_c0_g1_i3,blat.proc3825174.chain_1468	2	STRG.20612.1,Trinity_GG_28597_c0_g1_i2,blat.proc3825174.chain_1469,blat.proc3825174.chain_1470,blat.proc3825174.chain_1471,blat.proc3825174.chain_1472	6
scaffold_3	starts_in_intron	14520469	14520469	-	asmbl_39390	none	Trinity_GG_2106_c0_g1_i4,blat.proc3825150.chain_1	2	STRG.3792.1,Trinity_GG_2106_c0_g1_i2,blat.proc3825148.chain_3749	3
scaffold_24	retained_intron	1064662	1064849	+	asmbl_32063	none	STRG.26380.1,Trinity_GG_31903_c0_g1_i1,Trinity_GG_31903_c0_g1_i2,blat.proc3825176.chain_3366,blat.proc3825176.chain_3368	5	STRG.26380.5	1
scaffold_18	starts_in_intron	1330146	1330146	+	asmbl_20339	none	Trinity_GG_28828_c0_g1_i4,blat.proc3825174.chain_1863	2	STRG.21023.1,STRG.21023.2,STRG.21023.3,blat.proc3825174.chain_1860,blat.proc3825174.chain_1861,blat.proc3825174.chain_1862	6
scaffold_15	alt_donor	14634491	14634492	-	asmbl_14736	none	STRG.18877.4	1	STRG.18877.1,STRG.18877.2,STRG.18877.3,blat.proc3825156.chain_3748,blat.proc3825156.chain_3749,blat.proc3825156.chain_3750	6
scaffold_25	spliced_intron	3084205	3084656	-	asmbl_34088,asmbl_34089,asmbl_34090,asmbl_34092	none	STRG.27251.2,blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555	4	STRG.27251.4,Trinity_GG_15234_c0_g1_i6,blat.proc3825162.chain_558	3
scaffold_7	skipped_exon	4047076	4047398	-	asmbl_50850	none	STRG.8803.1	1	STRG.8803.3,blat.proc3825152.chain_1276	2
scaffold_17	alt_donor	4289158	4289159	-	asmbl_17848	none	blat.proc3825158.chain_1190	1	STRG.20187.1,blat.proc3825158.chain_1188,blat.proc3825158.chain_1189	3
scaffold_5	alt_donor	15044117	15044118	-	asmbl_44632,asmbl_44634,asmbl_44638,asmbl_44639	none	STRG.6698.2,STRG.6698.3,STRG.6698.4,Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2827	5	STRG.6698.5	1
scaffold_7	retained_intron	12412680	12412840	+	asmbl_50259	none	Trinity_GG_22499_c0_g1_i1,blat.proc3825168.chain_1869	2	STRG.9345.1,Trinity_GG_22499_c0_g1_i2,blat.proc3825168.chain_1868	3
scaffold_24	alternate_exon	10330681	10330839	+	asmbl_32554,asmbl_32555	none	STRG.26993.1,blat.proc3825178.chain_213,blat.proc3825178.chain_214	3	STRG.26993.2	1
scaffold_13	retained_intron	8721343	8721448	+	asmbl_11145	none	STRG.16143.2,Trinity_GG_26153_c0_g1_i1,blat.proc3825172.chain_855	3	STRG.16143.1,Trinity_GG_26153_c0_g2_i1,blat.proc3825172.chain_856	3
scaffold_3	alt_donor	16176435	16176436	-	asmbl_39487	none	STRG.3898.1,blat.proc3825150.chain_78	2	STRG.3898.2	1
scaffold_16	alt_acceptor	11337135	11337136	+	asmbl_16577,asmbl_16578,asmbl_16580	none	STRG.19664.1,STRG.19664.4,blat.proc3825174.chain_603,blat.proc3825174.chain_604,blat.proc3825174.chain_606	5	STRG.19664.3,blat.proc3825152.chain_406,blat.proc3825174.chain_605	3
scaffold_1	alt_donor	6279691	6279692	-	asmbl_335,asmbl_336,asmbl_337,asmbl_338,asmbl_339,asmbl_340,asmbl_341	none	Trinity_GG_229_c1_g1_i1,blat.proc3825148.chain_419	2	STRG.423.1,STRG.423.2,STRG.423.3,STRG.423.4	4
scaffold_5	skipped_exon	18261866	18263891	+	asmbl_46235,asmbl_46238,asmbl_46239	none	STRG.6968.1,blat.proc3825166.chain_3184,blat.proc3825166.chain_3187,blat.proc3825166.chain_3190	4	STRG.6968.2,blat.proc3825166.chain_3188,blat.proc3825166.chain_3191	3
scaffold_12	alt_acceptor	4721240	4721241	-	asmbl_8435	none	STRG.14649.4	1	STRG.14649.2,STRG.14649.3,STRG.14649.5,blat.proc3825154.chain_3097,blat.proc3825154.chain_3101	5
scaffold_14	alt_donor	6679304	6679305	+	asmbl_12100	none	blat.proc3825172.chain_1887,blat.proc3825172.chain_1888	2	STRG.17109.1,blat.proc3825172.chain_1886	2
scaffold_3	alt_acceptor	3315226	3315227	+	asmbl_39951	none	blat.proc3825148.chain_2938	1	blat.proc3825148.chain_2937	1
scaffold_5	retained_exon	7411154	7411201	-	asmbl_44175,asmbl_44176	none	STRG.6142.1,STRG.6142.2	2	STRG.6142.3	1
scaffold_12	spliced_intron	7392698	7392862	-	asmbl_8576	none	STRG.14823.1,blat.proc3825154.chain_3363	2	blat.proc3825154.chain_3364	1
scaffold_9	alt_acceptor	11876870	11876871	+	asmbl_54389	none	STRG.11509.1	1	Trinity_GG_23736_c0_g1_i2,blat.proc3825170.chain_329	2
scaffold_8	alternate_exon	17495325	17495474	+	asmbl_53489	none	STRG.10682.4	1	STRG.10682.1,STRG.10682.3,blat.proc3825168.chain_3150,blat.proc3825168.chain_3151,blat.proc3825168.chain_3152,blat.proc3825168.chain_3153,blat.proc3825168.chain_3155	7
scaffold_28	alternate_exon	8410057	8410101	+	asmbl_37742	none	STRG.29916.2	1	STRG.29916.1	1
scaffold_9	ends_in_intron	9869254	9869254	-	asmbl_55244	none	Trinity_GG_6280_c0_g1_i4,blat.proc3825152.chain_3584	2	STRG.11356.1,STRG.11356.3,Trinity_GG_6280_c0_g1_i6,blat.proc3825152.chain_3582	4
scaffold_15	starts_in_intron	15159567	15159567	+	asmbl_15715	none	Trinity_GG_27624_c3_g1_i1,blat.proc3825172.chain_3443	2	STRG.18906.5	1
scaffold_27	ends_in_intron	2787148	2787148	+	asmbl_36110	none	blat.proc3825178.chain_1828	1	STRG.28759.1,blat.proc3825178.chain_1827,blat.proc3825178.chain_1829,blat.proc3825178.chain_1830	4
scaffold_11	retained_intron	5898660	5898777	-	asmbl_6692	none	STRG.13660.1,blat.proc3825154.chain_2232	2	STRG.13660.2,blat.proc3825154.chain_2231	2
scaffold_21	starts_in_intron	257306	257306	-	asmbl_27285,asmbl_27295	none	STRG.23725.1,STRG.23725.3	2	STRG.23725.2,STRG.23725.5,STRG.23725.6,Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_802,blat.proc3825160.chain_803,blat.proc3825160.chain_804,blat.proc3825160.chain_805,blat.proc3825160.chain_806,blat.proc3825160.chain_807,blat.proc3825160.chain_808,blat.proc3825160.chain_810,blat.proc3825160.chain_811,blat.proc3825160.chain_812,blat.proc3825160.chain_813	15
scaffold_14	retained_intron	12628130	12628260	-	asmbl_13583,asmbl_13584,asmbl_13587	none	STRG.17582.4,blat.proc3825156.chain_2420,blat.proc3825156.chain_2424	3	STRG.17582.1,STRG.17582.2,STRG.17582.3,blat.proc3825156.chain_2416,blat.proc3825156.chain_2417,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422	9
scaffold_15	alt_donor	12602193	12602194	+	asmbl_15583	none	STRG.18714.1,blat.proc3825172.chain_3357	2	STRG.18714.2,blat.proc3825172.chain_3359	2
scaffold_7	alt_acceptor	8173615	8173616	+	asmbl_49957	none	STRG.9049.3,Trinity_GG_22317_c0_g2_i2,blat.proc3825168.chain_1533	3	STRG.9049.1,blat.proc3825168.chain_1534	2
scaffold_1	alt_acceptor	18033265	18033266	-	asmbl_1081	none	STRG.1269.2	1	STRG.1269.1,Trinity_GG_616_c0_g1_i2,blat.proc3825148.chain_1180	3
scaffold_26	spliced_intron	5755074	5756532	+	asmbl_35039	none	STRG.28274.1	1	blat.proc3825178.chain_1326,blat.proc3825178.chain_1327,blat.proc3825178.chain_1328	3
scaffold_5	retained_intron	188824	188862	+	asmbl_45086,asmbl_45087,asmbl_45088,asmbl_45089	none	STRG.5587.1,STRG.5587.2,STRG.5587.3,STRG.5587.4,Trinity_GG_20359_c0_g1_i2,blat.proc3825166.chain_1844	6	STRG.5587.5	1
scaffold_6	alt_acceptor	17523321	17523322	+	asmbl_47763	none	STRG.8455.3	1	STRG.8455.1,STRG.8455.2,Trinity_GG_21946_c1_g1_i1,Trinity_GG_21946_c1_g1_i4,blat.proc3825168.chain_892,blat.proc3825168.chain_893,blat.proc3825168.chain_894	7
scaffold_2	starts_in_intron	3811564	3811564	-	asmbl_23004	none	blat.proc3825148.chain_1741	1	STRG.1815.1,blat.proc3825148.chain_1740	2
scaffold_28	alt_acceptor	4207219	4207220	+	asmbl_37518	none	STRG.29616.4,blat.proc3825178.chain_2815	2	STRG.29616.1,STRG.29616.5,Trinity_GG_33739_c0_g1_i5,blat.proc3825178.chain_2812	4
scaffold_17	retained_intron	680623	680807	-	asmbl_17643	none	Trinity_GG_11175_c0_g1_i3,blat.proc3825158.chain_960	2	STRG.19921.1,STRG.19921.2,blat.proc3825158.chain_959,blat.proc3825158.chain_961,blat.proc3825158.chain_962	5
scaffold_17	alternate_exon	3960773	3960852	-	asmbl_17829	none	STRG.20151.2,blat.proc3825158.chain_1101	2	STRG.20151.1,blat.proc3825158.chain_1100	2
scaffold_13	spliced_intron	9535986	9536300	-	asmbl_10030,asmbl_10034	none	STRG.16216.3,STRG.16216.5,blat.proc3825156.chain_1124	3	STRG.16216.1,STRG.16216.2,blat.proc3825156.chain_1123	3
scaffold_6	alt_acceptor	9846508	9846509	+	asmbl_47244	none	STRG.7828.1,blat.proc3825168.chain_255	2	STRG.7828.2	1
scaffold_20	starts_in_intron	6188696	6188696	-	asmbl_25824	none	blat.proc3825160.chain_301	1	STRG.23221.1,blat.proc3825160.chain_302	2
scaffold_25	starts_in_intron	8705013	8705013	+	asmbl_33753,asmbl_33754	none	Trinity_GG_32580_c0_g1_i11,Trinity_GG_32580_c0_g1_i5,blat.proc3825178.chain_763,blat.proc3825178.chain_764	4	STRG.27702.1,STRG.27702.2,blat.proc3825178.chain_762,blat.proc3825178.chain_768,blat.proc3825178.chain_769,blat.proc3825178.chain_770	6
scaffold_4	spliced_intron	4095323	4095843	+	asmbl_41218	none	STRG.4315.3,blat.proc3825166.chain_707	2	STRG.4315.2,blat.proc3825166.chain_705,blat.proc3825166.chain_709	3
scaffold_11	spliced_intron	11943634	11943839	-	asmbl_7044,asmbl_7052	none	STRG.14177.4,blat.proc3825154.chain_2596	2	Trinity_GG_7854_c3_g1_i1,blat.proc3825154.chain_2599	2
scaffold_21	starts_in_intron	830866	830866	+	asmbl_28312,asmbl_28313	none	blat.proc3825176.chain_909,blat.proc3825176.chain_910	2	STRG.23777.1,STRG.23777.2,blat.proc3825176.chain_911,blat.proc3825176.chain_912	4
scaffold_4	starts_in_intron	15383206	15383206	-	asmbl_43095	none	blat.proc3825150.chain_1255	1	STRG.5130.1,blat.proc3825150.chain_1256	2
scaffold_6	spliced_intron	8460732	8460860	+	asmbl_47126,asmbl_47127,asmbl_47128,asmbl_47129	none	STRG.7725.1,STRG.7725.2,STRG.7725.3,STRG.7725.4,blat.proc3825168.chain_153,blat.proc3825168.chain_154	6	blat.proc3825168.chain_151	1
scaffold_2	alt_acceptor	14392460	14392461	+	asmbl_24929	none	STRG.2440.2,blat.proc3825164.chain_2696	2	STRG.2440.1,STRG.2440.3,blat.proc3825164.chain_2694,blat.proc3825164.chain_2695,blat.proc3825164.chain_2697	5
scaffold_3	retained_intron	4953609	4954271	+	asmbl_40046	none	Trinity_GG_19123_c0_g1_i2,blat.proc3825164.chain_3468	2	STRG.3193.1,blat.proc3825164.chain_3467	2
scaffold_23	starts_in_intron	4225515	4225515	-	asmbl_30851	none	blat.proc3825160.chain_2984	1	STRG.25839.1,STRG.25839.2,STRG.25839.3,STRG.25839.5,blat.proc3825160.chain_2986,blat.proc3825160.chain_2987,blat.proc3825160.chain_2988,blat.proc3825160.chain_2989	8
scaffold_12	alt_donor	10004223	10004224	-	asmbl_8715	none	STRG.14976.3	1	STRG.14976.1	1
scaffold_10	alt_donor	918480	918481	+	asmbl_2880,asmbl_2881	none	STRG.11967.2,blat.proc3825170.chain_665	2	STRG.11967.1,blat.proc3825170.chain_666,blat.proc3825170.chain_667,blat.proc3825170.chain_668,blat.proc3825170.chain_669	5
scaffold_27	retained_intron	314564	314644	-	asmbl_36657	none	STRG.28557.2,Trinity_GG_15948_c0_g1_i7	2	STRG.28557.1,STRG.28557.3,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725,blat.proc3825162.chain_1728	6
scaffold_21	starts_in_intron	11966294	11966294	-	asmbl_28144	none	Trinity_GG_13781_c0_g1_i1,blat.proc3825160.chain_1847	2	STRG.24652.1,STRG.24652.2,blat.proc3825160.chain_1846	3
scaffold_1	starts_in_intron	21249757	21249757	+	asmbl_2677	none	blat.proc3825164.chain_1582	1	STRG.1443.1	1
scaffold_27	alt_acceptor	9965586	9965587	+	asmbl_36554	none	STRG.29227.3	1	STRG.29227.1,STRG.29227.2,blat.proc3825178.chain_2435,blat.proc3825178.chain_2436	4
scaffold_6	alternate_exon	13918426	13918810	-	asmbl_48957	none	Trinity_GG_4635_c1_g1_i2,blat.proc3825152.chain_571	2	STRG.8139.1,STRG.8139.2,STRG.8139.4,blat.proc3825152.chain_568,blat.proc3825152.chain_569,blat.proc3825152.chain_570	6
scaffold_15	starts_in_intron	9733275	9733275	-	asmbl_14404,asmbl_14409	none	STRG.18492.2,STRG.18492.4	2	STRG.18492.1,STRG.18492.3,blat.proc3825156.chain_3291	3
scaffold_16	retained_intron	6135129	6135279	+	asmbl_16277	none	blat.proc3825174.chain_193	1	STRG.19347.1,STRG.19347.2,blat.proc3825174.chain_191,blat.proc3825174.chain_194	4
scaffold_5	starts_in_intron	5027738	5027738	-	asmbl_44023	none	blat.proc3825150.chain_2071,blat.proc3825152.chain_2116	2	STRG.5956.1,blat.proc3825150.chain_2070,blat.proc3825152.chain_2118	3
scaffold_13	alt_acceptor	3246793	3246794	+	asmbl_10674	none	STRG.15630.2	1	STRG.15630.1,blat.proc3825172.chain_406,blat.proc3825172.chain_407	3
scaffold_5	alt_acceptor	18703047	18703048	-	asmbl_44858	none	STRG.6996.1,blat.proc3825150.chain_3114	2	STRG.6996.2	1
scaffold_13	retained_intron	14982062	14982116	-	asmbl_10219	none	STRG.16543.1	1	STRG.16543.2	1
scaffold_15	retained_exon	15857506	15857571	+	asmbl_15819,asmbl_15825,asmbl_15828	none	STRG.18973.1,Trinity_GG_27688_c0_g1_i13,Trinity_GG_27688_c0_g1_i5,blat.proc3825172.chain_3568,blat.proc3825172.chain_3576,blat.proc3825172.chain_3577	6	STRG.18973.3,Trinity_GG_27688_c0_g1_i12,blat.proc3825172.chain_3569	3
scaffold_6	starts_in_intron	2700783	2700783	+	asmbl_46768	none	blat.proc3825166.chain_3477	1	STRG.7266.1,blat.proc3825166.chain_3476	2
scaffold_9	alternate_exon	11796217	11796697	-	asmbl_55303,asmbl_55304	none	STRG.11496.3,STRG.11496.4,Trinity_GG_6326_c2_g1_i1,blat.proc3825152.chain_3688	4	STRG.11496.1,STRG.11496.2,blat.proc3825152.chain_3683,blat.proc3825152.chain_3684,blat.proc3825152.chain_3685	5
scaffold_5	starts_in_intron	776647	776647	-	asmbl_43784	none	blat.proc3825150.chain_1781	1	STRG.5627.1,Trinity_GG_3132_c0_g1_i2,blat.proc3825150.chain_1780	3
scaffold_11	alt_donor	17208795	17208796	-	asmbl_7257	none	STRG.14388.2	1	STRG.14388.1,blat.proc3825154.chain_2890	2
scaffold_26	alt_donor	6385934	6385935	+	asmbl_35080	none	STRG.28336.1,blat.proc3825178.chain_1410	2	blat.proc3825178.chain_1409	1
scaffold_21	retained_intron	10098326	10098427	+	asmbl_28856,asmbl_28858	none	STRG.24472.1,STRG.24472.2	2	STRG.24472.3	1
scaffold_3	alt_donor	15838021	15838022	+	asmbl_40583	none	STRG.3861.1,blat.proc3825166.chain_367	2	STRG.3861.2	1
scaffold_23	alt_donor	1140015	1140016	-	asmbl_30631	none	blat.proc3825160.chain_2734	1	STRG.25596.1,STRG.25596.2,blat.proc3825160.chain_2731,blat.proc3825160.chain_2732,blat.proc3825160.chain_2733	5
scaffold_5	retained_exon	6289221	6289313	+	asmbl_45420	none	STRG.6040.2	1	STRG.6040.1,Trinity_GG_20629_c0_g1_i1,blat.proc3825166.chain_2289	3
scaffold_23	retained_intron	2585757	2586468	-	asmbl_30743,asmbl_30746	none	STRG.25725.1,Trinity_GG_14322_c1_g1_i3,Trinity_GG_14322_c1_g1_i5,blat.proc3825160.chain_2775	4	blat.proc3825160.chain_2778	1
scaffold_15	alt_acceptor	16268560	16268561	-	asmbl_14824	none	STRG.18982.1,Trinity_GG_10644_c0_g1_i1,blat.proc3825158.chain_77	3	blat.proc3825158.chain_78	1
scaffold_20	retained_intron	10452937	10453051	-	asmbl_26100	none	Trinity_GG_13117_c0_g1_i2,blat.proc3825160.chain_599	2	STRG.23588.1,Trinity_GG_13117_c0_g1_i1,blat.proc3825160.chain_598	3
scaffold_21	starts_in_intron	272683	272683	+	asmbl_28256	none	Trinity_GG_30451_c0_g1_i2,blat.proc3825176.chain_932	2	STRG.23726.1,Trinity_GG_30451_c0_g1_i1,blat.proc3825176.chain_933	3
scaffold_9	ends_in_intron	4901554	4901554	+	asmbl_53973	none	blat.proc3825168.chain_3604	1	STRG.11065.1,STRG.11065.2,blat.proc3825168.chain_3605	3
scaffold_1	alt_acceptor	1043519	1043520	+	asmbl_1454	none	STRG.62.2,blat.proc3825164.chain_92	2	STRG.62.4	1
scaffold_13	alt_acceptor	5869690	5869691	-	asmbl_9740	none	STRG.15902.2,blat.proc3825156.chain_766	2	STRG.15902.1	1
scaffold_18	starts_in_intron	13809296	13809296	+	asmbl_21046	none	Trinity_GG_29370_c1_g1_i2,blat.proc3825174.chain_2842	2	Trinity_GG_29370_c1_g1_i4,blat.proc3825174.chain_2841	2
scaffold_6	alternate_exon	14107632	14107694	-	asmbl_48985	none	STRG.8170.1	1	STRG.8170.2	1
scaffold_9	spliced_intron	6903544	6903648	-	asmbl_55087,asmbl_55088,asmbl_55090,asmbl_55091,asmbl_55092	none	STRG.11203.1,STRG.11203.2,blat.proc3825152.chain_3389,blat.proc3825152.chain_3390,blat.proc3825152.chain_3391,blat.proc3825152.chain_3392,blat.proc3825152.chain_3393	7	Trinity_GG_6189_c0_g1_i6,blat.proc3825152.chain_3394	2
scaffold_13	alternate_exon	8100335	8101749	+	asmbl_11098	none	STRG.16098.2,blat.proc3825172.chain_853	2	STRG.16098.1,Trinity_GG_26152_c0_g1_i1,Trinity_GG_26152_c2_g1_i1,blat.proc3825172.chain_852,blat.proc3825172.chain_854	5
scaffold_28	spliced_intron	7234745	7235090	+	asmbl_37644	none	blat.proc3825178.chain_2932	1	STRG.29785.2,Trinity_GG_33804_c1_g1_i1,blat.proc3825178.chain_2931,blat.proc3825178.chain_2933	4
scaffold_9	retained_intron	11551708	11551928	-	asmbl_55295	none	STRG.11473.2,blat.proc3825152.chain_3710	2	STRG.11473.1,STRG.11473.3,blat.proc3825152.chain_3707,blat.proc3825152.chain_3708	4
scaffold_21	starts_in_intron	11343554	11343554	+	asmbl_28929	none	Trinity_GG_30857_c0_g1_i1	1	blat.proc3825176.chain_1641	1
scaffold_23	spliced_intron	7005777	7006309	-	asmbl_31008	none	STRG.26025.5,blat.proc3825160.chain_3123	2	Trinity_GG_14528_c0_g1_i2,blat.proc3825160.chain_3122	2
scaffold_3	spliced_intron	16336074	16336193	-	asmbl_39494	none	STRG.3907.2	1	STRG.3907.1,Trinity_GG_2167_c1_g1_i1,blat.proc3825150.chain_107	3
scaffold_17	alt_acceptor	14325639	14325640	-	asmbl_18421	none	Trinity_GG_11735_c0_g1_i2,blat.proc3825158.chain_1886	2	blat.proc3825158.chain_1884	1
scaffold_1	retained_exon	3287205	3287337	+	asmbl_1590	none	STRG.209.2,blat.proc3825164.chain_326	2	STRG.209.1,blat.proc3825164.chain_327	2
scaffold_10	alt_donor	46070	46071	-	asmbl_3913	none	STRG.11902.2,Trinity_GG_6611_c0_g1_i1,blat.proc3825154.chain_418	3	STRG.11902.1	1
scaffold_14	starts_in_intron	7290624	7290624	-	asmbl_13186	none	Trinity_GG_9619_c0_g1_i1	1	STRG.17166.1,blat.proc3825156.chain_1957	2
scaffold_23	retained_exon	1851477	1851584	+	asmbl_31362	none	STRG.25669.1	1	STRG.25669.2,blat.proc3825176.chain_2626	2
scaffold_22	retained_intron	10286469	10286546	-	asmbl_29597	none	Trinity_GG_14171_c0_g1_i2,blat.proc3825160.chain_2481	2	STRG.25377.1	1
scaffold_7	spliced_intron	18392890	18393030	-	asmbl_51471,asmbl_51472,asmbl_51474,asmbl_51476,asmbl_51479	none	STRG.9670.5,STRG.9670.6,Trinity_GG_5439_c0_g1_i12,Trinity_GG_5439_c0_g1_i3,blat.proc3825152.chain_2013,blat.proc3825152.chain_2014,blat.proc3825152.chain_2015	7	Trinity_GG_5439_c0_g1_i9,blat.proc3825152.chain_2019	2
scaffold_7	alternate_exon	8173614	8178837	+	asmbl_49960	none	STRG.9049.1,blat.proc3825168.chain_1534	2	Trinity_GG_22317_c0_g1_i1,blat.proc3825168.chain_1532	2
scaffold_5	skipped_exon	14261932	14262734	+	asmbl_45916	none	blat.proc3825166.chain_2786	1	STRG.6638.4,blat.proc3825166.chain_2789,blat.proc3825166.chain_2790	3
scaffold_18	alt_donor	282012	282013	+	asmbl_20286	none	STRG.20984.2,Trinity_GG_28852_c1_g1_i1,blat.proc3825174.chain_1904	3	STRG.20984.1,STRG.20984.4,blat.proc3825174.chain_1902,blat.proc3825174.chain_1903	4
scaffold_6	spliced_intron	10916944	10917091	+	asmbl_47310,asmbl_47312	none	STRG.7909.3,blat.proc3825168.chain_386,blat.proc3825168.chain_387	3	blat.proc3825168.chain_389	1
scaffold_11	ends_in_intron	13576130	13576130	-	asmbl_7142,asmbl_7145	none	STRG.14217.2,blat.proc3825154.chain_2699	2	STRG.14217.1,blat.proc3825154.chain_2696,blat.proc3825154.chain_2698	3
scaffold_25	alt_donor	3086847	3086848	-	asmbl_34088,asmbl_34089,asmbl_34090,asmbl_34094	none	blat.proc3825162.chain_552,blat.proc3825162.chain_553,blat.proc3825162.chain_555,blat.proc3825162.chain_559	4	STRG.27251.2,STRG.27251.3,STRG.27251.5	3
scaffold_23	retained_intron	4316233	4316385	+	asmbl_31500	none	Trinity_GG_31566_c0_g1_i7,blat.proc3825176.chain_2775	2	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2777,blat.proc3825176.chain_2778,blat.proc3825176.chain_2780	6
scaffold_4	alt_acceptor	3279176	3279177	+	asmbl_41168	none	STRG.4256.1,Trinity_GG_19627_c0_g1_i3,blat.proc3825166.chain_610	3	Trinity_GG_19627_c0_g1_i1,blat.proc3825166.chain_609	2
scaffold_11	alt_acceptor	1016883	1016884	-	asmbl_6406	none	STRG.13302.2	1	STRG.13302.1,blat.proc3825154.chain_1856	2
scaffold_17	spliced_intron	9532452	9532877	+	asmbl_19102,asmbl_19103,asmbl_19107	none	STRG.20578.1,STRG.20578.2,Trinity_GG_28562_c0_g1_i3,Trinity_GG_28562_c0_g1_i6,blat.proc3825174.chain_1396,blat.proc3825174.chain_1403	6	blat.proc3825174.chain_1398,blat.proc3825174.chain_1401	2
scaffold_9	alternate_exon	14818384	14818545	-	asmbl_55503	none	STRG.11702.6	1	STRG.11702.1,STRG.11702.3,blat.proc3825154.chain_160,blat.proc3825154.chain_161	4
scaffold_26	ends_in_intron	9918801	9918801	-	asmbl_35799	none	Trinity_GG_15896_c0_g1_i3,blat.proc3825162.chain_1639	2	STRG.28525.1,STRG.28525.2,STRG.28525.3,Trinity_GG_15896_c0_g1_i4,blat.proc3825162.chain_1641	5
scaffold_16	alt_donor	4149517	4149518	+	asmbl_16179,asmbl_16180	none	STRG.19230.2,STRG.19230.3	2	STRG.19230.1,Trinity_GG_27835_c0_g1_i1,blat.proc3825174.chain_113	3
scaffold_6	retained_intron	11489986	11490454	+	asmbl_47326,asmbl_47327,asmbl_47330,asmbl_47334,asmbl_47335	none	STRG.7943.1,STRG.7943.2,blat.proc3825168.chain_309,blat.proc3825168.chain_310,blat.proc3825168.chain_311,blat.proc3825168.chain_313,blat.proc3825168.chain_314	7	STRG.7943.3,STRG.7943.4,blat.proc3825168.chain_312	3
scaffold_17	spliced_intron	3998584	3998790	+	asmbl_18757	none	blat.proc3825174.chain_1031	1	STRG.20160.1,STRG.20160.3,STRG.20160.4,blat.proc3825174.chain_1032,blat.proc3825174.chain_1033,blat.proc3825174.chain_1034	6
scaffold_11	alt_donor	15654451	15654452	-	asmbl_7197,asmbl_7199,asmbl_7203,asmbl_7205	none	STRG.14308.2,blat.proc3825154.chain_2863,blat.proc3825154.chain_2865,blat.proc3825154.chain_2866,blat.proc3825154.chain_2867	5	STRG.14308.1,blat.proc3825154.chain_2859,blat.proc3825154.chain_2860,blat.proc3825154.chain_2861,blat.proc3825154.chain_2868	5
scaffold_15	retained_intron	15413602	15413826	+	asmbl_15776,asmbl_15777,asmbl_15778,asmbl_15779,asmbl_15782	none	STRG.18953.1,STRG.18953.2,STRG.18953.5,blat.proc3825172.chain_3607,blat.proc3825172.chain_3608,blat.proc3825172.chain_3611,blat.proc3825172.chain_3612	7	STRG.18953.6,STRG.18953.7,blat.proc3825172.chain_3609	3
scaffold_27	spliced_intron	3297546	3297880	-	asmbl_36907	none	STRG.28810.2	1	STRG.28810.1,Trinity_GG_16152_c1_g1_i1,blat.proc3825162.chain_2061	3
scaffold_15	starts_in_intron	9685384	9685384	-	asmbl_14400	none	blat.proc3825156.chain_3235	1	STRG.18484.1,blat.proc3825156.chain_3233	2
scaffold_18	spliced_intron	4570648	4570746	+	asmbl_20532	none	STRG.21248.2,blat.proc3825174.chain_2219	2	STRG.21248.1,blat.proc3825174.chain_2216,blat.proc3825174.chain_2217,blat.proc3825174.chain_2218	4
scaffold_20	alternate_exon	9897911	9898105	+	asmbl_26910	none	STRG.23531.1,Trinity_GG_30291_c0_g1_i2	2	STRG.23531.2,Trinity_GG_30291_c0_g1_i1,blat.proc3825176.chain_656	3
scaffold_20	retained_intron	1664651	1664742	+	asmbl_26439	none	STRG.22904.1,blat.proc3825176.chain_104,blat.proc3825176.chain_105	3	STRG.22904.2	1
scaffold_19	skipped_exon	1667685	1668166	-	asmbl_22038,asmbl_22041	none	STRG.21926.1,STRG.21926.2,blat.proc3825158.chain_2769	3	blat.proc3825158.chain_2768	1
scaffold_3	alt_donor	12577627	12577628	+	asmbl_40411	none	blat.proc3825166.chain_170	1	STRG.3649.1,blat.proc3825166.chain_171	2
scaffold_2	alt_acceptor	17974256	17974257	+	asmbl_25209	none	blat.proc3825164.chain_2962	1	STRG.2689.1,STRG.2689.2,blat.proc3825164.chain_2961,blat.proc3825164.chain_2964	4
scaffold_4	alternate_exon	13762796	13763615	-	asmbl_43004,asmbl_43005	none	STRG.4997.1,blat.proc3825150.chain_1141,blat.proc3825150.chain_1143	3	STRG.4997.3	1
scaffold_20	alternate_exon	11774570	11774614	-	asmbl_26198	none	STRG.23689.3,Trinity_GG_13189_c0_g1_i1,blat.proc3825160.chain_768	3	STRG.23689.1,STRG.23689.2,Trinity_GG_13189_c0_g1_i2,Trinity_GG_13189_c0_g1_i3,blat.proc3825160.chain_767,blat.proc3825160.chain_769	6
scaffold_2	alt_acceptor	4331241	4331242	-	asmbl_23069	none	STRG.1863.2,blat.proc3825148.chain_1793	2	STRG.1863.1,blat.proc3825148.chain_1794	2
scaffold_21	skipped_exon	833405	835515	+	asmbl_28310,asmbl_28312	none	STRG.23777.1,blat.proc3825176.chain_909,blat.proc3825176.chain_912	3	STRG.23777.2,blat.proc3825176.chain_910,blat.proc3825176.chain_911	3
scaffold_13	retained_intron	6949076	6950695	-	asmbl_9818,asmbl_9819	none	STRG.15984.1,STRG.15984.6,Trinity_GG_8951_c0_g1_i5	3	STRG.15984.5	1
scaffold_25	starts_in_intron	1438960	1438960	+	asmbl_33375,asmbl_33377	none	STRG.27180.2,STRG.27180.3,Trinity_GG_32306_c0_g1_i1,blat.proc3825178.chain_327	4	STRG.27180.1,blat.proc3825178.chain_326	2
scaffold_2	retained_intron	7469156	7469515	-	asmbl_23264,asmbl_23266	none	blat.proc3825148.chain_2058,blat.proc3825148.chain_2064	2	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2
scaffold_12	starts_in_intron	4611647	4611647	-	asmbl_8414,asmbl_8415	none	Trinity_GG_8168_c0_g1_i1,blat.proc3825154.chain_3137,blat.proc3825154.chain_3141	3	STRG.14639.1,STRG.14639.2,STRG.14639.3,STRG.14639.4,blat.proc3825154.chain_3136,blat.proc3825154.chain_3138,blat.proc3825154.chain_3139,blat.proc3825154.chain_3140,blat.proc3825154.chain_3142	9
scaffold_18	retained_intron	5910191	5910450	+	asmbl_20618	none	Trinity_GG_29070_c0_g1_i3,blat.proc3825174.chain_2323	2	STRG.21344.2,blat.proc3825174.chain_2322	2
scaffold_10	starts_in_intron	5007385	5007385	-	asmbl_4328	none	blat.proc3825154.chain_895	1	STRG.12325.1,STRG.12325.2,Trinity_GG_6889_c0_g1_i1,blat.proc3825154.chain_893,blat.proc3825154.chain_894,blat.proc3825154.chain_896	6
scaffold_16	ends_in_intron	6148838	6148838	+	asmbl_16282	none	STRG.19354.4	1	STRG.19354.1,blat.proc3825174.chain_141,blat.proc3825174.chain_144	3
scaffold_4	starts_in_intron	5106772	5106772	-	asmbl_42556	none	blat.proc3825150.chain_627	1	STRG.4407.1,STRG.4407.2,blat.proc3825150.chain_626	3
scaffold_4	alt_acceptor	3384083	3384084	+	asmbl_41189,asmbl_41192,asmbl_41193,asmbl_41194	none	STRG.4276.1,STRG.4276.3,blat.proc3825166.chain_745,blat.proc3825166.chain_746,blat.proc3825166.chain_749	5	STRG.4276.2,blat.proc3825166.chain_748	2
scaffold_3	alt_acceptor	7972769	7972770	+	asmbl_40188	none	STRG.3384.1,blat.proc3825164.chain_3591	2	STRG.3384.2	1
scaffold_22	alt_acceptor	4592883	4592884	-	asmbl_29271	none	STRG.24892.2,blat.proc3825160.chain_2059	2	STRG.24892.1,blat.proc3825160.chain_2058,blat.proc3825160.chain_2060	3
scaffold_3	retained_intron	795219	795435	+	asmbl_39813	none	blat.proc3825164.chain_3161,blat.proc3825164.chain_3162	2	STRG.2906.1,blat.proc3825164.chain_3160	2
scaffold_2	starts_in_intron	2968182	2968182	+	asmbl_24262	none	Trinity_GG_18286_c0_g1_i3,blat.proc3825164.chain_1875	2	STRG.1732.1,Trinity_GG_18286_c0_g1_i2,blat.proc3825164.chain_1876,blat.proc3825164.chain_1877	4
scaffold_3	alternate_exon	2665385	2665559	+	asmbl_39912,asmbl_39917	none	STRG.3041.3,blat.proc3825164.chain_3263,blat.proc3825164.chain_3264	3	STRG.3041.1,STRG.3041.2,STRG.3041.4,blat.proc3825164.chain_3260,blat.proc3825164.chain_3261,blat.proc3825164.chain_3262	6
scaffold_17	ends_in_intron	12008095	12008095	+	asmbl_19251	none	blat.proc3825174.chain_1608	1	STRG.20728.1,blat.proc3825174.chain_1607	2
scaffold_28	spliced_intron	2109125	2109263	+	asmbl_37323	none	STRG.29372.1	1	blat.proc3825178.chain_2535	1
scaffold_10	retained_intron	5849287	5849521	-	asmbl_4390,asmbl_4391	none	STRG.12404.1,STRG.12404.2,blat.proc3825154.chain_885	3	STRG.12404.3,blat.proc3825154.chain_886	2
scaffold_27	retained_intron	1551570	1551779	+	asmbl_36026	none	blat.proc3825178.chain_1744	1	STRG.28642.1,STRG.28642.2,STRG.28642.3,Trinity_GG_33147_c0_g1_i4,blat.proc3825178.chain_1740,blat.proc3825178.chain_1742	6
scaffold_5	alt_donor	13801697	13801698	-	asmbl_44561,asmbl_44564,asmbl_44565,asmbl_44566	none	STRG.6602.1,STRG.6602.3,blat.proc3825150.chain_2813,blat.proc3825150.chain_2814,blat.proc3825150.chain_2815	5	blat.proc3825150.chain_2811	1
scaffold_20	alt_donor	1489676	1489677	+	asmbl_26417	none	STRG.22869.1	1	STRG.22869.2,STRG.22869.3,STRG.22869.4,STRG.22869.6	4
scaffold_22	starts_in_intron	505369	505369	-	asmbl_29093	none	STRG.24702.3	1	STRG.24702.1,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i4,blat.proc3825160.chain_1865,blat.proc3825160.chain_1867,blat.proc3825160.chain_1869	7
scaffold_13	ends_in_intron	8012611	8012611	+	asmbl_11090	none	blat.proc3825172.chain_790	1	STRG.16081.1,blat.proc3825172.chain_788	2
scaffold_21	alternate_exon	7952041	7952104	-	asmbl_27875	none	STRG.24328.2	1	STRG.24328.1,blat.proc3825160.chain_1476	2
scaffold_22	retained_intron	4240365	4240805	-	asmbl_29220	none	blat.proc3825160.chain_2066	1	STRG.24845.1,blat.proc3825160.chain_2067,blat.proc3825160.chain_2068	3
scaffold_10	alt_acceptor	11604703	11604704	+	asmbl_3477,asmbl_3479,asmbl_3480	none	STRG.12815.3,blat.proc3825170.chain_1423,blat.proc3825170.chain_1425	3	STRG.12815.1,STRG.12815.2,STRG.12815.4,STRG.12815.5,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1428,blat.proc3825170.chain_1429	8
scaffold_18	alt_donor	600029	600030	-	asmbl_19591,asmbl_19593	none	STRG.20998.1,blat.proc3825158.chain_1955,blat.proc3825158.chain_1956	3	STRG.20998.2	1
scaffold_18	alternate_exon	7866786	7866928	-	asmbl_19984	none	STRG.21486.1	1	STRG.21486.2,blat.proc3825158.chain_2405	2
scaffold_21	ends_in_intron	2527497	2527497	-	asmbl_27473	none	Trinity_GG_13323_c0_g1_i2,blat.proc3825160.chain_1032	2	STRG.23884.1,blat.proc3825160.chain_1033,blat.proc3825160.chain_1034	3
scaffold_15	retained_intron	12421730	12421933	+	asmbl_15561,asmbl_15563	none	blat.proc3825172.chain_3323,blat.proc3825172.chain_3326	2	STRG.18696.1,blat.proc3825172.chain_3324,blat.proc3825172.chain_3325	3
scaffold_23	spliced_intron	4315627	4315866	+	asmbl_31499,asmbl_31501,asmbl_31502	none	STRG.25852.1,blat.proc3825176.chain_2772,blat.proc3825176.chain_2774,blat.proc3825176.chain_2777	4	blat.proc3825176.chain_2778,blat.proc3825176.chain_2780	2
scaffold_14	alternate_exon	8216075	8216381	-	asmbl_13258	none	STRG.17234.5	1	STRG.17234.1,STRG.17234.3,STRG.17234.4,blat.proc3825156.chain_2056,blat.proc3825156.chain_2057,blat.proc3825156.chain_2059	6
scaffold_13	ends_in_intron	11599898	11599898	+	asmbl_11284,asmbl_11285,asmbl_11286,asmbl_11290	none	STRG.16316.4,STRG.16316.5,STRG.16316.6,blat.proc3825172.chain_1037	4	STRG.16316.1,STRG.16316.3,blat.proc3825172.chain_1028,blat.proc3825172.chain_1029,blat.proc3825172.chain_1030,blat.proc3825172.chain_1032,blat.proc3825172.chain_1034,blat.proc3825172.chain_1035,blat.proc3825172.chain_1036	9
scaffold_17	alt_donor	2684413	2684414	+	asmbl_18682,asmbl_18683	none	STRG.20069.2,blat.proc3825174.chain_849	2	STRG.20069.1,STRG.20069.3,blat.proc3825174.chain_848,blat.proc3825174.chain_851	4
scaffold_13	ends_in_intron	12243219	12243219	-	asmbl_10126	none	Trinity_GG_9163_c0_g1_i5,blat.proc3825156.chain_1220	2	STRG.16353.1,STRG.16353.2,STRG.16353.3,blat.proc3825156.chain_1216,blat.proc3825156.chain_1217,blat.proc3825156.chain_1218	6
scaffold_2	skipped_exon	11256046	11256587	+	asmbl_24746,asmbl_24747	none	STRG.2257.1,blat.proc3825164.chain_2417,blat.proc3825164.chain_2418	3	STRG.2257.2,STRG.2257.3,blat.proc3825164.chain_2416	3
scaffold_8	alt_acceptor	6162715	6162716	-	asmbl_51865,asmbl_51869	none	blat.proc3825152.chain_2270,blat.proc3825152.chain_2276	2	STRG.10030.1,STRG.10030.3,STRG.10030.4,blat.proc3825152.chain_2271,blat.proc3825152.chain_2272,blat.proc3825152.chain_2273,blat.proc3825152.chain_2274,blat.proc3825152.chain_2275	8
scaffold_12	retained_intron	3330743	3331370	+	asmbl_7548	none	Trinity_GG_25356_c0_g1_i4,blat.proc3825170.chain_3111	2	STRG.14555.1,STRG.14555.3,STRG.14555.5,Trinity_GG_25356_c0_g1_i1,Trinity_GG_25356_c0_g1_i3,blat.proc3825170.chain_3112	6
scaffold_7	retained_intron	5915073	5915159	-	asmbl_50902	none	Trinity_GG_5028_c0_g1_i2,blat.proc3825152.chain_1289	2	STRG.8897.1,STRG.8897.2,STRG.8897.3,blat.proc3825152.chain_1284,blat.proc3825152.chain_1285,blat.proc3825152.chain_1286,blat.proc3825152.chain_1287,blat.proc3825152.chain_1288	8
scaffold_16	spliced_intron	293907	294060	-	asmbl_16847	none	STRG.19020.1,blat.proc3825158.chain_142	2	STRG.19020.2,blat.proc3825158.chain_139,blat.proc3825158.chain_140	3
scaffold_13	alt_donor	2349054	2349055	+	asmbl_10604	none	STRG.15564.2	1	STRG.15564.11,STRG.15564.12,STRG.15564.5	3
scaffold_25	alt_donor	9550387	9550388	+	asmbl_33830,asmbl_33831	none	STRG.27772.1,blat.proc3825178.chain_811,blat.proc3825178.chain_814	3	STRG.27772.3	1
scaffold_1	starts_in_intron	6012908	6012908	+	asmbl_1817	none	blat.proc3825164.chain_560	1	STRG.405.1,blat.proc3825164.chain_561	2
scaffold_27	spliced_intron	294852	294971	+	asmbl_35943	none	STRG.28556.2,Trinity_GG_33120_c0_g1_i2,blat.proc3825178.chain_1695	3	STRG.28556.1,Trinity_GG_33120_c0_g1_i1,blat.proc3825178.chain_1694	3
scaffold_6	starts_in_intron	12115545	12115545	+	asmbl_47375	none	STRG.7985.2	1	STRG.7985.1	1
scaffold_18	starts_in_intron	8914249	8914249	-	asmbl_20044,asmbl_20053	none	blat.proc3825158.chain_2451,blat.proc3825158.chain_2453	2	STRG.21558.1,STRG.21558.3,STRG.21558.4,STRG.21558.6,blat.proc3825158.chain_2447,blat.proc3825158.chain_2449	6
scaffold_7	retained_intron	8659757	8660031	-	asmbl_51026,asmbl_51027	none	blat.proc3825152.chain_1497,blat.proc3825152.chain_1498	2	STRG.9099.2	1
scaffold_8	retained_intron	18442849	18443312	-	asmbl_52543	none	blat.proc3825152.chain_3024	1	STRG.10748.1,blat.proc3825152.chain_3023	2
scaffold_1	spliced_intron	11769504	11769614	+	asmbl_2146,asmbl_2147,asmbl_2148	none	STRG.802.1,STRG.802.2,STRG.802.3,blat.proc3825164.chain_982	4	blat.proc3825164.chain_983	1
scaffold_23	skipped_exon	9329762	9331870	+	asmbl_31790	none	STRG.26165.2	1	STRG.26165.1	1
scaffold_4	retained_intron	5444968	5445072	-	asmbl_42606	none	STRG.4442.1,blat.proc3825150.chain_697	2	STRG.4442.2,blat.proc3825150.chain_698	2
scaffold_21	alt_acceptor	5545679	5545680	+	asmbl_28579	none	blat.proc3825176.chain_1305	1	STRG.24088.1,blat.proc3825176.chain_1304	2
scaffold_13	skipped_exon	10433500	10435476	+	asmbl_11237,asmbl_11238,asmbl_11240	none	STRG.16250.1,STRG.16250.3,STRG.16250.4,blat.proc3825172.chain_975,blat.proc3825172.chain_976	5	STRG.16250.2,blat.proc3825172.chain_977	2
scaffold_17	retained_intron	8951018	8951264	+	asmbl_19049	none	blat.proc3825174.chain_1375	1	STRG.20514.1,blat.proc3825174.chain_1376	2
scaffold_15	starts_in_intron	4985016	4985016	-	asmbl_14182,asmbl_14183,asmbl_14185	none	STRG.18211.3,STRG.18211.4,STRG.18211.5	3	STRG.18211.1,blat.proc3825156.chain_3069,blat.proc3825156.chain_3070,blat.proc3825156.chain_3072	4
scaffold_6	ends_in_intron	12481514	12481514	+	asmbl_47400	none	blat.proc3825168.chain_472	1	STRG.8006.1,STRG.8006.2,STRG.8006.4,blat.proc3825168.chain_473,blat.proc3825168.chain_474,blat.proc3825168.chain_475,blat.proc3825168.chain_477	7
scaffold_2	alt_donor	6351029	6351030	-	asmbl_23193	none	STRG.2001.1,Trinity_GG_1061_c0_g1_i1,blat.proc3825148.chain_1893	3	STRG.2001.2	1
scaffold_1	spliced_intron	7814234	7814497	+	asmbl_1924	none	STRG.539.3	1	STRG.539.1,blat.proc3825164.chain_705	2
scaffold_6	retained_intron	8173665	8173844	-	asmbl_48539	none	Trinity_GG_4351_c0_g1_i6,blat.proc3825152.chain_94	2	STRG.7706.1,Trinity_GG_4351_c0_g1_i9,blat.proc3825152.chain_85,blat.proc3825152.chain_86,blat.proc3825152.chain_89,blat.proc3825152.chain_91,blat.proc3825152.chain_92,blat.proc3825152.chain_93,blat.proc3825152.chain_95	9
scaffold_1	retained_exon	4226021	4226071	+	asmbl_1641	none	STRG.254.2,blat.proc3825164.chain_378,blat.proc3825164.chain_381	3	STRG.254.1,blat.proc3825164.chain_377,blat.proc3825164.chain_379	3
scaffold_7	retained_intron	13546262	13546404	+	asmbl_50361	none	blat.proc3825168.chain_1994	1	STRG.9464.1,blat.proc3825168.chain_1995,blat.proc3825168.chain_1996	3
scaffold_10	alternate_exon	17059394	17060069	-	asmbl_5027	none	STRG.13149.2	1	STRG.13149.3	1
scaffold_20	retained_exon	631162	631182	-	asmbl_25503	none	STRG.22765.1,blat.proc3825158.chain_3610	2	STRG.22765.2,blat.proc3825158.chain_3608	2
scaffold_20	ends_in_intron	11516823	11516823	+	asmbl_27070	none	Trinity_GG_30412_c0_g1_i2,blat.proc3825176.chain_864	2	STRG.23657.1	1
scaffold_18	starts_in_intron	7745737	7745737	+	asmbl_20790	none	blat.proc3825174.chain_2538	1	STRG.21481.1,blat.proc3825174.chain_2537,blat.proc3825174.chain_2539	3
scaffold_16	alternate_exon	14546156	14550755	-	asmbl_17461	none	STRG.19850.2	1	STRG.19850.3	1
scaffold_19	starts_in_intron	3184702	3184702	-	asmbl_22089	none	blat.proc3825158.chain_2837	1	STRG.22002.1	1
scaffold_8	spliced_intron	6018602	6018729	-	asmbl_51857	none	STRG.10012.2,Trinity_GG_5580_c0_g1_i1,blat.proc3825152.chain_2268	3	Trinity_GG_5580_c0_g1_i3,blat.proc3825152.chain_2267	2
scaffold_2	alt_acceptor	7469156	7469157	-	asmbl_23263	none	Trinity_GG_1141_c0_g1_i24,blat.proc3825148.chain_2052	2	STRG.2074.2,STRG.2074.3,Trinity_GG_1141_c0_g1_i3,blat.proc3825148.chain_2057,blat.proc3825148.chain_2063	5
scaffold_6	alternate_exon	2902130	2902820	-	asmbl_48187	none	blat.proc3825150.chain_3393	1	STRG.7290.1,blat.proc3825150.chain_3392	2
scaffold_6	alt_donor	6999970	6999971	+	asmbl_47038	none	STRG.7612.3	1	STRG.7612.1,STRG.7612.2,blat.proc3825168.chain_10	3
scaffold_23	retained_exon	5583838	5583875	+	asmbl_31590	none	STRG.25931.4	1	STRG.25931.1,STRG.25931.2,Trinity_GG_31582_c0_g1_i1,blat.proc3825176.chain_2802	4
scaffold_21	alternate_exon	254803	256224	-	asmbl_27289	none	STRG.23725.4	1	Trinity_GG_13204_c0_g1_i11,blat.proc3825160.chain_813	2
scaffold_4	alt_donor	1334256	1334257	-	asmbl_42367,asmbl_42368,asmbl_42369	none	STRG.4173.3,STRG.4173.4,blat.proc3825150.chain_394,blat.proc3825150.chain_395	4	STRG.4173.2,blat.proc3825150.chain_392,blat.proc3825150.chain_393	3
scaffold_22	starts_in_intron	4581465	4581465	+	asmbl_30029	none	Trinity_GG_31072_c0_g1_i2,blat.proc3825176.chain_2006	2	STRG.24887.1,STRG.24887.2,STRG.24887.3,STRG.24887.4,blat.proc3825176.chain_2001,blat.proc3825176.chain_2003,blat.proc3825176.chain_2004	7
scaffold_13	alt_donor	4376463	4376464	+	asmbl_10785,asmbl_10787,asmbl_10788	none	STRG.15764.1,STRG.15764.2,STRG.15764.4	3	STRG.15764.3	1
scaffold_20	alternate_exon	8290168	8290834	+	asmbl_26756,asmbl_26757,asmbl_26759	none	STRG.23374.1,STRG.23374.2,STRG.23374.3,blat.proc3825176.chain_519	4	STRG.23374.4,blat.proc3825176.chain_518	2
scaffold_15	retained_intron	15414145	15414286	+	asmbl_15775,asmbl_15776	none	STRG.18953.2,STRG.18953.3,Trinity_GG_27701_c0_g1_i3,blat.proc3825172.chain_3613	4	STRG.18953.4,blat.proc3825172.chain_3608,blat.proc3825172.chain_3609,blat.proc3825172.chain_3612	4
scaffold_3	skipped_exon	6176437	6177777	-	asmbl_38901,asmbl_38902,asmbl_38904	none	STRG.3284.1,STRG.3284.3,blat.proc3825148.chain_3075,blat.proc3825148.chain_3076	4	STRG.3284.2	1
scaffold_2	spliced_intron	19140192	19140304	+	asmbl_25267	none	STRG.2783.2,blat.proc3825164.chain_2981	2	STRG.2783.1,Trinity_GG_18842_c0_g1_i2,blat.proc3825164.chain_2980	3
scaffold_5	alternate_exon	4688419	4693877	-	asmbl_43983,asmbl_43985,asmbl_43989,asmbl_43991,asmbl_43993	none	STRG.5929.1,STRG.5929.4,blat.proc3825150.chain_2078,blat.proc3825150.chain_2080,blat.proc3825150.chain_2081,blat.proc3825150.chain_2082,blat.proc3825150.chain_2085	7	Trinity_GG_3313_c0_g1_i8,blat.proc3825150.chain_2077	2
scaffold_228	retained_exon	5060	5089	-	asmbl_30564	none	STRG.30244.1,blat.proc3825162.chain_3375	2	STRG.30244.2,blat.proc3825162.chain_3373	2
scaffold_20	alt_acceptor	11078653	11078654	-	asmbl_26130,asmbl_26134	none	STRG.23624.1,blat.proc3825160.chain_592,blat.proc3825160.chain_594	3	STRG.23624.2,blat.proc3825160.chain_595	2
scaffold_6	retained_intron	18269465	18269732	+	asmbl_47826	none	STRG.8501.3,Trinity_GG_21995_c0_g1_i1,blat.proc3825168.chain_981	3	STRG.8501.1,STRG.8501.2,blat.proc3825168.chain_978	3
scaffold_15	starts_in_intron	5629262	5629262	-	asmbl_14228	none	Trinity_GG_10271_c0_g1_i2,blat.proc3825156.chain_3101	2	STRG.18252.1,STRG.18252.2,Trinity_GG_10271_c0_g1_i1,blat.proc3825156.chain_3100	4
scaffold_23	alt_donor	4899125	4899126	+	asmbl_31532,asmbl_31533,asmbl_31537	none	STRG.25884.1,STRG.25884.4,Trinity_GG_31591_c0_g1_i3,Trinity_GG_31591_c0_g1_i4,blat.proc3825176.chain_2816,blat.proc3825176.chain_2817	6	STRG.25884.2	1
scaffold_15	retained_intron	15189220	15189525	+	asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737,asmbl_15739	none	blat.proc3825172.chain_3519,blat.proc3825172.chain_3523,blat.proc3825172.chain_3527,blat.proc3825172.chain_3528,blat.proc3825172.chain_3531,blat.proc3825172.chain_3534,blat.proc3825172.chain_3535	7	STRG.18910.1,STRG.18910.2,blat.proc3825172.chain_3518,blat.proc3825172.chain_3520,blat.proc3825172.chain_3522,blat.proc3825172.chain_3524,blat.proc3825172.chain_3525,blat.proc3825172.chain_3526,blat.proc3825172.chain_3529,blat.proc3825172.chain_3532,blat.proc3825172.chain_3536	11
scaffold_20	retained_intron	7857888	7858063	-	asmbl_25935,asmbl_25937	none	STRG.23336.4,blat.proc3825160.chain_415	2	STRG.23336.1,STRG.23336.2,STRG.23336.3,blat.proc3825160.chain_416,blat.proc3825160.chain_417	5
scaffold_10	alt_donor	6324125	6324126	-	asmbl_4447,asmbl_4448	none	STRG.12462.1,STRG.12462.2,blat.proc3825154.chain_997,blat.proc3825154.chain_998	4	STRG.12462.3	1
scaffold_27	retained_intron	381931	382927	-	asmbl_36681	none	STRG.28567.2,Trinity_GG_15949_c1_g1_i4,blat.proc3825162.chain_1732,blat.proc3825162.chain_1734	4	STRG.28567.3,STRG.28567.5,blat.proc3825162.chain_1733,blat.proc3825162.chain_1735	4
scaffold_14	alternate_exon	2477759	2477798	-	asmbl_12962	none	STRG.16860.2	1	STRG.16860.1,Trinity_GG_9445_c0_g1_i2,blat.proc3825156.chain_1678	3
scaffold_14	ends_in_intron	8009314	8009314	+	asmbl_12188	none	blat.proc3825172.chain_1981	1	STRG.17217.1,blat.proc3825172.chain_1980	2
scaffold_5	starts_in_intron	4834621	4834621	+	asmbl_45303	none	Trinity_GG_20565_c0_g1_i1,blat.proc3825166.chain_2167	2	STRG.5943.1,Trinity_GG_20565_c0_g1_i2,blat.proc3825166.chain_2168	3
scaffold_4	alt_donor	6286322	6286323	-	asmbl_42667,asmbl_42671,asmbl_42672	none	STRG.4498.1,Trinity_GG_2543_c0_g1_i5,Trinity_GG_2543_c0_g1_i6,Trinity_GG_2543_c0_g1_i8,blat.proc3825150.chain_775,blat.proc3825150.chain_777,blat.proc3825150.chain_778	7	STRG.4498.2,STRG.4498.3,Trinity_GG_2543_c0_g1_i2,Trinity_GG_2543_c0_g1_i7,blat.proc3825150.chain_774,blat.proc3825150.chain_780	6
scaffold_25	ends_in_intron	4578413	4578413	+	asmbl_33519,asmbl_33520,asmbl_33521	none	STRG.27395.3,Trinity_GG_32430_c0_g1_i10,Trinity_GG_32430_c0_g1_i4,Trinity_GG_32430_c0_g1_i9,blat.proc3825178.chain_528,blat.proc3825178.chain_530,blat.proc3825178.chain_531	7	STRG.27395.1,STRG.27395.2,Trinity_GG_32430_c0_g1_i5,blat.proc3825178.chain_533	4
scaffold_14	skipped_exon	6449782	6450530	-	asmbl_13135	none	STRG.17095.2	1	STRG.17095.1,blat.proc3825156.chain_1922	2
scaffold_17	alt_acceptor	10023609	10023610	+	asmbl_19156,asmbl_19157	none	STRG.20619.1,STRG.20619.2	2	STRG.20619.3	1
scaffold_14	skipped_exon	3225324	3226535	+	asmbl_11925,asmbl_11926	none	STRG.16910.2,STRG.16910.3	2	STRG.16910.1	1
scaffold_4	alt_acceptor	3383995	3383996	+	asmbl_41188	none	STRG.4276.2,blat.proc3825166.chain_748	2	STRG.4276.1,STRG.4276.3,blat.proc3825166.chain_745,blat.proc3825166.chain_746,blat.proc3825166.chain_749	5
scaffold_3	retained_exon	11978355	11978535	+	asmbl_40384	none	STRG.3620.1,Trinity_GG_19308_c0_g1_i2,blat.proc3825166.chain_49	3	STRG.3620.3	1
scaffold_8	skipped_exon	5761429	5763686	+	asmbl_52906	none	Trinity_GG_22872_c0_g1_i1,blat.proc3825168.chain_2557	2	STRG.9995.1	1
scaffold_5	starts_in_intron	16793015	16793015	-	asmbl_44779	none	STRG.6867.1,blat.proc3825150.chain_2979	2	STRG.6867.2,STRG.6867.3,blat.proc3825150.chain_2980	3
scaffold_5	skipped_exon	13244510	13245544	+	asmbl_45867,asmbl_45870	none	STRG.6568.2,STRG.6568.3,blat.proc3825166.chain_2749	3	STRG.6568.1,blat.proc3825166.chain_2750,blat.proc3825166.chain_2751	3
scaffold_25	starts_in_intron	7318229	7318229	-	asmbl_34392	none	blat.proc3825162.chain_909	1	STRG.27577.1,Trinity_GG_15441_c0_g1_i3,blat.proc3825162.chain_910	3
scaffold_22	alternate_exon	11477475	11477630	+	asmbl_30394	none	STRG.25495.1,Trinity_GG_31379_c0_g1_i1,blat.proc3825176.chain_2477	3	STRG.25495.3,Trinity_GG_31379_c0_g1_i2,Trinity_GG_31379_c0_g1_i4,blat.proc3825176.chain_2476,blat.proc3825176.chain_2478	5
scaffold_8	alt_donor	11850111	11850112	+	asmbl_53279	none	STRG.10390.4,Trinity_GG_23130_c1_g1_i1,blat.proc3825168.chain_3028	3	STRG.10390.5,blat.proc3825168.chain_3019,blat.proc3825168.chain_3027	3
scaffold_16	alt_donor	2215678	2215679	+	asmbl_16124	none	STRG.19123.2	1	blat.proc3825172.chain_3745	1
scaffold_4	starts_in_intron	6488656	6488656	-	asmbl_42681	none	Trinity_GG_2536_c0_g1_i3,blat.proc3825150.chain_762	2	STRG.4510.1,blat.proc3825150.chain_763	2
scaffold_19	starts_in_intron	12816566	12816566	-	asmbl_22550	none	blat.proc3825158.chain_3417	1	Trinity_GG_12585_c0_g1_i7,blat.proc3825158.chain_3414	2
scaffold_1	retained_intron	9513340	9513605	-	asmbl_537	none	blat.proc3825148.chain_625	1	STRG.635.1,blat.proc3825148.chain_624	2
scaffold_2	alt_acceptor	14196880	14196881	-	asmbl_23572,asmbl_23573,asmbl_23574,asmbl_23575	none	STRG.2414.1,STRG.2414.2,STRG.2414.4,blat.proc3825148.chain_2405,blat.proc3825148.chain_2406,blat.proc3825148.chain_2407	6	STRG.2414.3	1
scaffold_28	starts_in_intron	8029613	8029613	+	asmbl_37717	none	Trinity_GG_33832_c0_g1_i3,blat.proc3825178.chain_2980	2	STRG.29874.1,STRG.29874.2,blat.proc3825178.chain_2979,blat.proc3825178.chain_2981	4
scaffold_26	alternate_exon	5862522	5862609	+	asmbl_35050	none	blat.proc3825178.chain_1391	1	STRG.28294.2	1
scaffold_5	spliced_intron	15044005	15044118	-	asmbl_44634	none	Trinity_GG_3732_c0_g1_i3,blat.proc3825150.chain_2827	2	Trinity_GG_3732_c0_g1_i1,blat.proc3825150.chain_2826	2
scaffold_5	alt_donor	9335563	9335564	-	asmbl_44275	none	STRG.6258.1	1	Trinity_GG_3478_c0_g1_i1,blat.proc3825150.chain_2382	2
scaffold_10	spliced_intron	8895840	8895918	-	asmbl_4621,asmbl_4622,asmbl_4623,asmbl_4625,asmbl_4626,asmbl_4627,asmbl_4629,asmbl_4631,asmbl_4632	none	STRG.12637.1,blat.proc3825154.chain_1262,blat.proc3825154.chain_1264,blat.proc3825154.chain_1266,blat.proc3825154.chain_1267,blat.proc3825154.chain_1268,blat.proc3825154.chain_1271,blat.proc3825154.chain_1272,blat.proc3825154.chain_1273,blat.proc3825154.chain_1275	10	blat.proc3825154.chain_1265,blat.proc3825154.chain_1269,blat.proc3825154.chain_1274	3
scaffold_340	spliced_intron	2802	2916	+	asmbl_41011,asmbl_41012,asmbl_41015	none	STRG.30295.2,STRG.30295.3,STRG.30295.5	3	STRG.30295.4,Trinity_GG_34083_c0_g1_i8,blat.proc3825178.chain_3395	3
scaffold_14	spliced_intron	9272764	9273885	-	asmbl_13363	none	STRG.17338.4	1	blat.proc3825156.chain_2200,blat.proc3825156.chain_2203	2
scaffold_2	skipped_exon	13445747	13448231	-	asmbl_23519	none	blat.proc3825148.chain_2364	1	STRG.2363.1,blat.proc3825148.chain_2360,blat.proc3825148.chain_2363	3
scaffold_19	skipped_exon	3684104	3684940	+	asmbl_21332,asmbl_21334,asmbl_21336	none	STRG.22058.2,STRG.22058.3,STRG.22058.5	3	STRG.22058.1,blat.proc3825174.chain_3085	2
scaffold_13	skipped_exon	6803745	6804588	+	asmbl_10976,asmbl_10978	none	STRG.15970.2,blat.proc3825172.chain_720	2	STRG.15970.1,blat.proc3825172.chain_721,blat.proc3825172.chain_723	3
scaffold_18	skipped_exon	10004393	10007012	-	asmbl_20097	none	STRG.21591.2	1	STRG.21591.1	1
scaffold_6	alternate_exon	12631512	12631564	+	asmbl_47427	none	STRG.8022.1	1	STRG.8022.2,blat.proc3825168.chain_423	2
scaffold_21	ends_in_intron	1798912	1798912	+	asmbl_28366	none	blat.proc3825176.chain_997	1	STRG.23826.1,STRG.23826.2,blat.proc3825176.chain_1000,blat.proc3825176.chain_998,blat.proc3825176.chain_999	5
scaffold_10	alt_acceptor	11598326	11598327	+	asmbl_3476	none	STRG.12815.1	1	STRG.12815.2,STRG.12815.3	2
scaffold_19	starts_in_intron	9422761	9422761	+	asmbl_21586	none	Trinity_GG_29671_c0_g1_i1	1	STRG.22370.1,blat.proc3825174.chain_3360	2
scaffold_25	starts_in_intron	9255665	9255665	+	asmbl_33796	none	blat.proc3825178.chain_829	1	STRG.27734.1,blat.proc3825178.chain_828	2
scaffold_15	alt_donor	4964556	4964557	+	asmbl_15175,asmbl_15177,asmbl_15181	none	STRG.18207.2,STRG.18207.3,blat.proc3825172.chain_2889,blat.proc3825172.chain_2891	4	STRG.18207.1,Trinity_GG_27299_c0_g1_i8,Trinity_GG_27299_c0_g1_i9,blat.proc3825172.chain_2890,blat.proc3825172.chain_2892,blat.proc3825172.chain_2893,blat.proc3825172.chain_2895	7
scaffold_20	starts_in_intron	11539128	11539128	-	asmbl_26152	none	blat.proc3825160.chain_724	1	STRG.23660.1,Trinity_GG_13172_c0_g1_i1,blat.proc3825160.chain_723	3
scaffold_23	alternate_exon	810768	811001	-	asmbl_30608	none	Trinity_GG_14309_c0_g1_i7,blat.proc3825160.chain_2756	2	STRG.25583.1,STRG.25583.3,blat.proc3825160.chain_2754	3
scaffold_19	retained_exon	13748995	13749215	+	asmbl_21885,asmbl_21887	none	STRG.22694.1,STRG.22694.2,blat.proc3825174.chain_3684	3	STRG.22694.3	1
scaffold_5	alternate_exon	4694545	4696111	+	asmbl_45288	none	STRG.5925.4	1	STRG.5925.5,blat.proc3825166.chain_2151	2
scaffold_5	alternate_exon	19031504	19037457	-	asmbl_44884,asmbl_44885,asmbl_44886	none	STRG.7022.2,STRG.7022.4,STRG.7022.5,Trinity_GG_3910_c1_g1_i1,blat.proc3825150.chain_3131,blat.proc3825150.chain_3136	6	STRG.7022.1	1
scaffold_2	starts_in_intron	2804373	2804373	-	asmbl_22921	none	blat.proc3825148.chain_1656	1	STRG.1718.1,blat.proc3825148.chain_1657	2
scaffold_21	spliced_intron	8004779	8005332	+	asmbl_28776	none	STRG.24337.2,blat.proc3825176.chain_1553	2	STRG.24337.3,blat.proc3825176.chain_1557	2
scaffold_5	spliced_intron	16937471	16937586	-	asmbl_44785,asmbl_44786,asmbl_44788	none	STRG.6874.1,blat.proc3825150.chain_2993,blat.proc3825150.chain_2995,blat.proc3825150.chain_2996	4	blat.proc3825150.chain_2994	1
scaffold_9	skipped_exon	361448	362689	+	asmbl_53755	none	STRG.10777.2,blat.proc3825168.chain_3315	2	STRG.10777.1,blat.proc3825168.chain_3314	2
scaffold_20	ends_in_intron	1108214	1108214	-	asmbl_25534	none	Trinity_GG_12735_c0_g1_i3,blat.proc3825158.chain_3676	2	blat.proc3825158.chain_3675,blat.proc3825158.chain_3677	2
scaffold_4	alt_acceptor	8628230	8628231	+	asmbl_41568	none	STRG.4682.2,blat.proc3825166.chain_1139	2	STRG.4682.1,blat.proc3825166.chain_1140	2
scaffold_6	skipped_exon	2844284	2844733	-	asmbl_48169,asmbl_48171	none	STRG.7282.2,STRG.7282.3,blat.proc3825150.chain_3368	3	STRG.7282.1,blat.proc3825150.chain_3369	2
scaffold_22	alt_donor	6151861	6151862	-	asmbl_29310,asmbl_29314	none	STRG.24977.1,blat.proc3825160.chain_2106,blat.proc3825160.chain_2107	3	STRG.24977.2,STRG.24977.3,blat.proc3825160.chain_2105	3
scaffold_22	retained_intron	7454499	7454589	+	asmbl_30186	none	Trinity_GG_31202_c0_g1_i2,blat.proc3825176.chain_2213	2	STRG.25081.1	1
scaffold_21	starts_in_intron	557183	557183	-	asmbl_27336	none	Trinity_GG_13232_c0_g1_i2,blat.proc3825160.chain_875	2	STRG.23749.1,Trinity_GG_13232_c0_g1_i1,blat.proc3825160.chain_874	3
scaffold_27	spliced_intron	6258368	6258607	+	asmbl_36394	none	STRG.29016.2,blat.proc3825178.chain_2194	2	STRG.29016.1,blat.proc3825178.chain_2190	2
scaffold_14	alt_acceptor	6683560	6683561	-	asmbl_13149,asmbl_13150	none	STRG.17110.1,blat.proc3825156.chain_1917,blat.proc3825156.chain_1918	3	STRG.17110.2	1
scaffold_9	ends_in_intron	1944669	1944669	-	asmbl_54856	none	blat.proc3825152.chain_3119	1	STRG.10872.1,blat.proc3825152.chain_3118	2
scaffold_20	alternate_exon	11774945	11776965	-	asmbl_26197	none	STRG.23689.2,Trinity_GG_13189_c0_g1_i3,blat.proc3825160.chain_767	3	STRG.23689.3,Trinity_GG_13189_c0_g1_i1,blat.proc3825160.chain_768	3
scaffold_6	alt_donor	12241600	12241601	+	asmbl_47389	none	STRG.7990.2	1	STRG.7990.1	1
scaffold_10	retained_intron	9555114	9555373	+	asmbl_3405	none	blat.proc3825170.chain_1279	1	STRG.12711.1,STRG.12711.2,STRG.12711.3,Trinity_GG_24296_c0_g1_i14,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1284,blat.proc3825170.chain_1286,blat.proc3825170.chain_1287	8
scaffold_25	retained_exon	2689708	2689825	+	asmbl_33402,asmbl_33404	none	STRG.27234.2,blat.proc3825178.chain_309	2	STRG.27234.1	1
scaffold_15	retained_intron	12525670	12525837	+	asmbl_15580	none	Trinity_GG_27572_c0_g1_i1,blat.proc3825172.chain_3329	2	STRG.18706.1,blat.proc3825172.chain_3328	2
scaffold_2	spliced_intron	8874291	8874378	+	asmbl_24653,asmbl_24654	none	STRG.2139.2,STRG.2139.3,blat.proc3825164.chain_2328,blat.proc3825164.chain_2331	4	STRG.2139.1,blat.proc3825164.chain_2329,blat.proc3825164.chain_2330	3
scaffold_17	alternate_exon	13957889	13957924	+	asmbl_19371	none	blat.proc3825174.chain_1771	1	STRG.20882.1,STRG.20882.2,blat.proc3825174.chain_1773,blat.proc3825174.chain_1774,blat.proc3825174.chain_1775	5
scaffold_10	alt_donor	5259150	5259151	-	asmbl_4353	none	STRG.12356.2	1	STRG.12356.3,blat.proc3825154.chain_919	2
scaffold_18	skipped_exon	8400595	8401901	+	asmbl_20831	none	STRG.21513.1,blat.proc3825174.chain_2580	2	STRG.21513.3,STRG.21513.5,blat.proc3825174.chain_2581	3
scaffold_1	ends_in_intron	20135211	20135211	-	asmbl_1177	none	Trinity_GG_765_c0_g1_i2	1	STRG.1386.1,STRG.1386.2,STRG.1386.6,STRG.1386.7,blat.proc3825148.chain_1398	5
scaffold_12	spliced_intron	14125377	14125446	-	asmbl_8992	none	STRG.15244.3,blat.proc3825156.chain_81	2	STRG.15244.1,STRG.15244.2,Trinity_GG_8555_c1_g1_i1,blat.proc3825156.chain_79,blat.proc3825156.chain_80	5
scaffold_13	alt_acceptor	3913617	3913618	+	asmbl_10749	none	STRG.15718.1,blat.proc3825172.chain_455	2	STRG.15718.2	1
scaffold_11	alternate_exon	191649	194414	+	asmbl_5276	none	blat.proc3825170.chain_1805	1	STRG.13252.2,Trinity_GG_24600_c0_g1_i2,blat.proc3825170.chain_1806	3
scaffold_4	starts_in_intron	3279117	3279117	+	asmbl_41170	none	Trinity_GG_19627_c0_g1_i2,blat.proc3825166.chain_611	2	STRG.4256.1,Trinity_GG_19627_c0_g1_i1,Trinity_GG_19627_c0_g1_i3,blat.proc3825166.chain_609,blat.proc3825166.chain_610	5
scaffold_17	spliced_intron	13467626	13467758	-	asmbl_18368	none	STRG.20824.1,blat.proc3825158.chain_1770	2	STRG.20824.2,blat.proc3825158.chain_1771	2
scaffold_2382	alt_donor	598	599	-	asmbl_31996	none	STRG.30748.1,blat.proc3825164.chain_2	2	blat.proc3825178.chain_997	1
scaffold_12	skipped_exon	14989527	14991070	-	asmbl_9026	none	STRG.15298.1,Trinity_GG_8566_c0_g1_i1,blat.proc3825156.chain_118	3	STRG.15298.2,Trinity_GG_8566_c0_g1_i4,blat.proc3825156.chain_119	3
scaffold_8	alternate_exon	14535322	14535365	+	asmbl_53376	none	STRG.10535.2	1	STRG.10535.1,blat.proc3825168.chain_3049	2
scaffold_12	spliced_intron	4787739	4787935	-	asmbl_8447,asmbl_8450,asmbl_8454,asmbl_8457	none	STRG.14660.3,STRG.14660.4,blat.proc3825154.chain_3147,blat.proc3825154.chain_3149,blat.proc3825154.chain_3153	5	STRG.14660.6,blat.proc3825154.chain_3148	2
scaffold_10	retained_intron	3732814	3732994	+	asmbl_3065	none	STRG.12202.1,blat.proc3825170.chain_914	2	STRG.12202.2,blat.proc3825170.chain_915	2
scaffold_16	alternate_exon	7531944	7532277	+	asmbl_16346	none	STRG.19412.1,blat.proc3825174.chain_293	2	STRG.19412.2	1
scaffold_16	starts_in_intron	13235269	13235269	-	asmbl_17405	none	Trinity_GG_11072_c0_g1_i4	1	STRG.19771.1,blat.proc3825158.chain_807	2
scaffold_3	retained_intron	15573354	15573483	+	asmbl_40569,asmbl_40570,asmbl_40571	none	STRG.3847.4,blat.proc3825166.chain_328,blat.proc3825166.chain_329	3	STRG.3847.1,STRG.3847.3,blat.proc3825166.chain_327,blat.proc3825166.chain_330	4
scaffold_7	starts_in_intron	712260	712260	-	asmbl_50697	none	STRG.8610.2	1	STRG.8610.1,blat.proc3825152.chain_1090,blat.proc3825152.chain_1092,blat.proc3825152.chain_1093	4
scaffold_2	skipped_exon	2878799	2879496	-	asmbl_22931,asmbl_22933,asmbl_22935,asmbl_22939,asmbl_22941	none	STRG.1736.1,STRG.1736.2,blat.proc3825148.chain_1668,blat.proc3825148.chain_1672,blat.proc3825148.chain_1673	5	STRG.1736.3,blat.proc3825148.chain_1667,blat.proc3825148.chain_1670,blat.proc3825148.chain_1671,blat.proc3825148.chain_1674	5
scaffold_27	alt_donor	1095250	1095251	+	asmbl_35992	none	blat.proc3825178.chain_1751	1	STRG.28608.1,blat.proc3825178.chain_1752	2
scaffold_13	alt_acceptor	12253712	12253713	+	asmbl_11353	none	STRG.16359.3	1	STRG.16359.1,Trinity_GG_26285_c0_g1_i1,Trinity_GG_26285_c0_g1_i2,blat.proc3825172.chain_1113,blat.proc3825172.chain_1114,blat.proc3825172.chain_1115	6
scaffold_27	retained_intron	2903102	2903179	-	asmbl_36870	none	STRG.28776.3,blat.proc3825162.chain_1965	2	STRG.28776.2	1
scaffold_27	alt_acceptor	2436417	2436418	+	asmbl_36084	none	STRG.28717.2	1	STRG.28717.1	1
scaffold_6	starts_in_intron	4292487	4292487	-	asmbl_48307	none	blat.proc3825150.chain_3527	1	blat.proc3825150.chain_3528	1
scaffold_26	spliced_intron	2264373	2264869	+	asmbl_34742	none	STRG.27957.2,blat.proc3825178.chain_1005	2	STRG.27957.1,blat.proc3825178.chain_1004	2
scaffold_18	alt_acceptor	9170423	9170424	+	asmbl_20878,asmbl_20881	none	STRG.21559.2,STRG.21559.3,Trinity_GG_29198_c0_g1_i2,blat.proc3825174.chain_2557	4	Trinity_GG_29198_c0_g1_i1,blat.proc3825174.chain_2558	2
scaffold_7	alt_donor	9393024	9393025	+	asmbl_50079	none	STRG.9142.2,Trinity_GG_22390_c0_g1_i2,blat.proc3825168.chain_1663	3	STRG.9142.1,Trinity_GG_22390_c0_g1_i1,blat.proc3825168.chain_1662	3
scaffold_1	retained_intron	14277132	14277229	+	asmbl_2366	none	Trinity_GG_17932_c0_g1_i1,blat.proc3825164.chain_1203	2	STRG.1023.1,STRG.1023.2,Trinity_GG_17932_c0_g1_i4,Trinity_GG_17932_c0_g1_i5,blat.proc3825164.chain_1200,blat.proc3825164.chain_1201	6
scaffold_21	alternate_exon	11993377	11993657	-	asmbl_28146	none	STRG.24651.1,Trinity_GG_13782_c0_g1_i1,blat.proc3825160.chain_1848	3	STRG.24651.2	1
scaffold_16	alt_acceptor	7369389	7369390	+	asmbl_16334	none	STRG.19397.3,blat.proc3825174.chain_332	2	STRG.19397.1,STRG.19397.2,blat.proc3825174.chain_330,blat.proc3825174.chain_331	4
scaffold_8	retained_intron	7807845	7807927	-	asmbl_51928	none	blat.proc3825152.chain_2313	1	STRG.10100.1,blat.proc3825152.chain_2314,blat.proc3825152.chain_2315,blat.proc3825152.chain_2316,blat.proc3825152.chain_2318	5
scaffold_4	alternate_exon	17637630	17637673	-	asmbl_43294	none	STRG.5357.2	1	STRG.5357.1	1
scaffold_9	spliced_intron	8948604	8948646	-	asmbl_55155	none	STRG.11282.1	1	Trinity_GG_6243_c0_g1_i2,blat.proc3825152.chain_3509	2
scaffold_20	alternate_exon	6281542	6281581	+	asmbl_26656	none	STRG.23227.2	1	STRG.23227.1	1
scaffold_15	alternate_exon	670294	670516	-	asmbl_13941	none	STRG.17932.3,blat.proc3825156.chain_2724	2	STRG.17932.1,blat.proc3825156.chain_2721,blat.proc3825156.chain_2722	3
scaffold_5	alt_acceptor	9163672	9163673	+	asmbl_45618	none	STRG.6254.2	1	STRG.6254.1,blat.proc3825166.chain_2467	2
scaffold_28	alt_acceptor	1641128	1641129	+	asmbl_37319	none	STRG.29352.2	1	STRG.29352.1,STRG.29352.3,blat.proc3825178.chain_2562,blat.proc3825178.chain_2563	4
scaffold_12	spliced_intron	14100592	14100679	-	asmbl_8973	none	STRG.15238.1,Trinity_GG_8539_c0_g1_i2,blat.proc3825156.chain_32	3	Trinity_GG_8539_c0_g1_i1,blat.proc3825156.chain_31	2
scaffold_15	spliced_intron	395669	395769	-	asmbl_13919	none	STRG.17896.1,blat.proc3825156.chain_2701,blat.proc3825156.chain_2702	3	STRG.17896.2	1
scaffold_28	spliced_intron	9225948	9226024	-	asmbl_38499	none	STRG.29966.2	1	STRG.29966.1,Trinity_GG_16810_c0_g1_i1,Trinity_GG_16810_c0_g1_i2,blat.proc3825162.chain_3141,blat.proc3825162.chain_3142	5
scaffold_13	alt_donor	6299900	6299901	-	asmbl_9778	none	STRG.15926.1,blat.proc3825156.chain_822	2	STRG.15926.2,blat.proc3825156.chain_821	2
scaffold_4	starts_in_intron	8426517	8426517	-	asmbl_42774	none	blat.proc3825150.chain_827	1	STRG.4673.1,STRG.4673.2,blat.proc3825150.chain_828,blat.proc3825150.chain_830	4
scaffold_9	spliced_intron	11842900	11843151	-	asmbl_55325,asmbl_55328,asmbl_55333	none	STRG.11513.1,blat.proc3825152.chain_3658,blat.proc3825152.chain_3659,blat.proc3825152.chain_3660	4	blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3663,blat.proc3825152.chain_3664	4
scaffold_11	starts_in_intron	17381898	17381898	-	asmbl_7268	none	blat.proc3825154.chain_2895	1	STRG.14397.1,STRG.14397.2,blat.proc3825154.chain_2896	3
scaffold_4	alt_acceptor	4378469	4378470	-	asmbl_42508,asmbl_42510	none	STRG.4339.2,STRG.4339.3,blat.proc3825150.chain_577	3	STRG.4339.1	1
scaffold_16	alternate_exon	1476996	1477174	+	asmbl_16077	none	STRG.19089.1,blat.proc3825172.chain_3740	2	STRG.19089.2,blat.proc3825172.chain_3739	2
scaffold_25	retained_intron	4289292	4289367	+	asmbl_33483	none	STRG.27359.1,blat.proc3825178.chain_381	2	STRG.27359.2	1
scaffold_5	alternate_exon	9106416	9106587	+	asmbl_45613	none	STRG.6256.2	1	STRG.6256.1	1
scaffold_23	alt_acceptor	5619885	5619886	-	asmbl_30926	none	STRG.25937.2,blat.proc3825160.chain_3059	2	STRG.25937.3,Trinity_GG_14487_c0_g1_i1,blat.proc3825160.chain_3056,blat.proc3825160.chain_3058	4
scaffold_4	retained_exon	12629160	12629249	-	asmbl_42937,asmbl_42938	none	STRG.4902.1,STRG.4902.2,blat.proc3825150.chain_1038,blat.proc3825150.chain_1039	4	STRG.4902.3	1
scaffold_14	skipped_exon	15565676	15565918	+	asmbl_12621	none	blat.proc3825172.chain_2534	1	blat.proc3825172.chain_2531,blat.proc3825172.chain_2533,blat.proc3825172.chain_2535	3
scaffold_14	retained_exon	3160912	3161004	+	asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11918,asmbl_11922,asmbl_11923,asmbl_11924	none	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i4,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1606,blat.proc3825172.chain_1607,blat.proc3825172.chain_1608,blat.proc3825172.chain_1610,blat.proc3825172.chain_1611	14	Trinity_GG_26576_c0_g1_i17,blat.proc3825172.chain_1604	2
scaffold_13	starts_in_intron	12459807	12459807	-	asmbl_10135	none	STRG.16372.1	1	STRG.16372.2	1
scaffold_5	alternate_exon	990274	990314	-	asmbl_43806	none	STRG.5650.3	1	STRG.5650.1,STRG.5650.2,STRG.5650.4,blat.proc3825150.chain_1880,blat.proc3825150.chain_1881	5
scaffold_7	starts_in_intron	9846160	9846160	-	asmbl_51084	none	blat.proc3825152.chain_1510	1	STRG.9184.1,blat.proc3825152.chain_1511	2
scaffold_28	retained_intron	5237564	5237680	-	asmbl_38271,asmbl_38274	none	blat.proc3825162.chain_2780,blat.proc3825162.chain_2786	2	STRG.29676.1,STRG.29676.2,blat.proc3825162.chain_2781,blat.proc3825162.chain_2782,blat.proc3825162.chain_2785,blat.proc3825162.chain_2787	6
scaffold_2	retained_intron	4124203	4124621	-	asmbl_23052	none	Trinity_GG_1007_c1_g1_i1,blat.proc3825148.chain_1792	2	STRG.1854.1,Trinity_GG_1007_c0_g1_i1,Trinity_GG_1007_c0_g1_i2,blat.proc3825148.chain_1790,blat.proc3825148.chain_1791	5
scaffold_3	retained_intron	7286007	7286114	-	asmbl_38962,asmbl_38963	none	STRG.3330.2,STRG.3330.3,blat.proc3825148.chain_3215,blat.proc3825148.chain_3216	4	STRG.3330.1,blat.proc3825148.chain_3214	2
scaffold_9	starts_in_intron	6905233	6905233	-	asmbl_55096	none	Trinity_GG_6207_c0_g1_i4,blat.proc3825152.chain_3444	2	STRG.11202.2,blat.proc3825152.chain_3442	2
scaffold_8	retained_intron	7482090	7482283	-	asmbl_51912	none	Trinity_GG_5574_c0_g2_i1,blat.proc3825152.chain_2260	2	STRG.10078.1,blat.proc3825152.chain_2256,blat.proc3825152.chain_2257,blat.proc3825152.chain_2259	4
scaffold_14	starts_in_intron	7302914	7302914	+	asmbl_12153	none	Trinity_GG_26738_c0_g1_i3,blat.proc3825172.chain_1900	2	STRG.17172.1,Trinity_GG_26738_c0_g1_i4,blat.proc3825172.chain_1901	3
scaffold_26	spliced_intron	5044652	5044757	+	asmbl_34937,asmbl_34943,asmbl_34949,asmbl_34950,asmbl_34951,asmbl_34952,asmbl_34955,asmbl_34957	none	STRG.28240.1,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1168,blat.proc3825178.chain_1171,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179	9	blat.proc3825178.chain_1169,blat.proc3825178.chain_1170,blat.proc3825178.chain_1180	3
scaffold_3	starts_in_intron	15787823	15787823	-	asmbl_39449,asmbl_39450	none	STRG.3859.1,STRG.3859.3,Trinity_GG_2100_c2_g2_i1,blat.proc3825148.chain_3737	4	STRG.3859.2,Trinity_GG_2100_c2_g1_i1,blat.proc3825148.chain_3736	3
scaffold_8	alternate_exon	3603404	3603542	+	asmbl_52781	none	STRG.9857.1,blat.proc3825168.chain_2404	2	STRG.9857.3,blat.proc3825168.chain_2402	2
scaffold_15	alt_acceptor	12435951	12435952	+	asmbl_15567,asmbl_15568	none	blat.proc3825172.chain_3337,blat.proc3825172.chain_3341	2	STRG.18701.1,blat.proc3825172.chain_3343	2
scaffold_28	alt_acceptor	3216632	3216633	-	asmbl_38139	none	STRG.29535.2,blat.proc3825162.chain_2653	2	STRG.29535.1,blat.proc3825162.chain_2654	2
scaffold_9	ends_in_intron	16738416	16738416	-	asmbl_55623	none	Trinity_GG_6538_c0_g1_i4,blat.proc3825154.chain_308	2	STRG.11819.1,STRG.11819.2,Trinity_GG_6538_c0_g1_i1,Trinity_GG_6538_c0_g1_i3,blat.proc3825154.chain_307,blat.proc3825154.chain_309	6
scaffold_7	starts_in_intron	8587316	8587316	+	asmbl_50020	none	Trinity_GG_22359_c0_g2_i1,blat.proc3825168.chain_1619	2	STRG.9086.1,STRG.9086.2	2
scaffold_6	alt_acceptor	10916799	10916800	+	asmbl_47310	none	STRG.7909.3,blat.proc3825168.chain_386	2	blat.proc3825168.chain_387	1
scaffold_13	spliced_intron	3055042	3055287	-	asmbl_9510,asmbl_9512	none	STRG.15613.1,STRG.15613.2,blat.proc3825156.chain_465	3	STRG.15613.3	1
scaffold_14	alternate_exon	12630087	12632590	-	asmbl_13579,asmbl_13580,asmbl_13583,asmbl_13587,asmbl_13588	none	STRG.17582.1,STRG.17582.3,STRG.17582.5,blat.proc3825156.chain_2416,blat.proc3825156.chain_2418,blat.proc3825156.chain_2420,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	8	STRG.17582.2,blat.proc3825156.chain_2421	2
scaffold_24	retained_intron	1945924	1946155	-	asmbl_32754	none	STRG.26421.3	1	STRG.26421.4	1
scaffold_3	alternate_exon	1469901	1470832	+	asmbl_39850	none	STRG.2967.1,Trinity_GG_18988_c0_g1_i3	2	Trinity_GG_18988_c0_g1_i2,blat.proc3825164.chain_3202	2
scaffold_16	starts_in_intron	14552717	14552717	+	asmbl_16686,asmbl_16687,asmbl_16688,asmbl_16691	none	STRG.19851.3,Trinity_GG_28180_c0_g1_i1,Trinity_GG_28180_c0_g1_i2,Trinity_GG_28180_c0_g1_i6,blat.proc3825174.chain_729,blat.proc3825174.chain_731,blat.proc3825174.chain_732	7	STRG.19851.1,STRG.19851.2,Trinity_GG_28180_c0_g1_i3,blat.proc3825174.chain_730	4
scaffold_19	alt_acceptor	6212923	6212924	+	asmbl_21399,asmbl_21400	none	STRG.22153.1,STRG.22153.2,blat.proc3825174.chain_3106,blat.proc3825174.chain_3107	4	STRG.22153.3,blat.proc3825174.chain_3104,blat.proc3825174.chain_3105	3
scaffold_4	alt_acceptor	5652334	5652335	-	asmbl_42616,asmbl_42617,asmbl_42618,asmbl_42619	none	STRG.4472.1,STRG.4472.2,STRG.4472.3,Trinity_GG_2475_c0_g1_i10,blat.proc3825150.chain_657,blat.proc3825150.chain_659,blat.proc3825150.chain_661,blat.proc3825150.chain_662	8	STRG.4472.4,STRG.4472.5,blat.proc3825150.chain_656,blat.proc3825150.chain_663,blat.proc3825150.chain_666	5
scaffold_27	alt_acceptor	9099778	9099779	+	asmbl_36504,asmbl_36505	none	blat.proc3825178.chain_2363,blat.proc3825178.chain_2364	2	STRG.29163.1,STRG.29163.2,blat.proc3825178.chain_2361,blat.proc3825178.chain_2362,blat.proc3825178.chain_2365	5
scaffold_16	retained_intron	9033041	9033770	+	asmbl_16454,asmbl_16457,asmbl_16458	none	STRG.19515.2,STRG.19515.3,Trinity_GG_28002_c0_g1_i3,blat.proc3825174.chain_440,blat.proc3825174.chain_441	5	STRG.19515.4,blat.proc3825174.chain_443	2
scaffold_17	alt_donor	13610475	13610476	+	asmbl_19339	none	STRG.20835.2	1	STRG.20835.1	1
scaffold_16	alternate_exon	5514427	5514552	-	asmbl_17122	none	STRG.19312.1,blat.proc3825158.chain_362	2	STRG.19312.2,blat.proc3825158.chain_361	2
scaffold_4	retained_intron	8746476	8746565	+	asmbl_41573	none	Trinity_GG_19910_c0_g1_i3,blat.proc3825166.chain_1120	2	STRG.4690.1,blat.proc3825166.chain_1121	2
scaffold_24	alt_acceptor	7589804	7589805	-	asmbl_33035	none	STRG.26799.2	1	STRG.26799.1	1
scaffold_14	ends_in_intron	12832547	12832547	+	asmbl_12450,asmbl_12451	none	blat.proc3825172.chain_2252,blat.proc3825172.chain_2254	2	STRG.17603.1,blat.proc3825172.chain_2253	2
scaffold_1	spliced_intron	16095601	16095726	-	asmbl_976	none	STRG.1129.4	1	STRG.1129.1,Trinity_GG_582_c0_g1_i1,blat.proc3825148.chain_1117,blat.proc3825148.chain_1119	4
scaffold_8	starts_in_intron	116510	116510	-	asmbl_51692	none	blat.proc3825152.chain_2063,blat.proc3825152.chain_3234	2	STRG.9714.1	1
scaffold_24	ends_in_intron	8641127	8641127	+	asmbl_32430	none	blat.proc3825178.chain_67	1	STRG.26874.1,STRG.26874.2,blat.proc3825178.chain_68	3
scaffold_17	spliced_intron	9029724	9030964	-	asmbl_18141	none	STRG.20532.6	1	Trinity_GG_11556_c0_g1_i5,blat.proc3825158.chain_1574	2
scaffold_12	retained_exon	14105030	14105111	-	asmbl_8983	none	blat.proc3825156.chain_91	1	STRG.15241.1,Trinity_GG_8557_c0_g1_i11,Trinity_GG_8557_c0_g1_i17,Trinity_GG_8557_c0_g1_i4,Trinity_GG_8557_c0_g1_i6,Trinity_GG_8557_c0_g1_i9,blat.proc3825156.chain_87,blat.proc3825156.chain_88,blat.proc3825156.chain_90,blat.proc3825156.chain_92,blat.proc3825156.chain_93,blat.proc3825156.chain_94,blat.proc3825156.chain_95,blat.proc3825156.chain_96,blat.proc3825156.chain_97	15
scaffold_4	spliced_intron	9254304	9254682	+	asmbl_41605	none	STRG.4719.1,blat.proc3825166.chain_1128	2	STRG.4719.2	1
scaffold_2	alt_donor	8068225	8068226	-	asmbl_23312	none	STRG.2103.1	1	STRG.2103.2,Trinity_GG_1161_c0_g1_i1,blat.proc3825148.chain_2113	3
scaffold_5	spliced_intron	14124559	14124669	-	asmbl_44589	none	STRG.6623.1	1	blat.proc3825166.chain_2774	1
scaffold_7	alternate_exon	11247707	11249705	+	asmbl_50164	none	STRG.9274.2,blat.proc3825168.chain_1777	2	STRG.9274.1,STRG.9274.3,Trinity_GG_22459_c0_g1_i2,blat.proc3825168.chain_1778	4
scaffold_9	alt_donor	5296267	5296268	+	asmbl_54030	none	blat.proc3825168.chain_3571	1	STRG.11112.1,STRG.11112.2,STRG.11112.3,blat.proc3825168.chain_3570,blat.proc3825168.chain_3572,blat.proc3825168.chain_3574	6
scaffold_8	retained_intron	16230070	16230333	+	asmbl_53435,asmbl_53436	none	STRG.10614.3,Trinity_GG_23224_c0_g1_i3,Trinity_GG_23224_c0_g1_i4,blat.proc3825168.chain_3186,blat.proc3825168.chain_3190	5	STRG.10614.1,STRG.10614.2,Trinity_GG_23224_c0_g1_i2,blat.proc3825168.chain_3188	4
scaffold_14	skipped_exon	8215090	8216523	-	asmbl_13257	none	STRG.17234.3	1	STRG.17234.2,blat.proc3825156.chain_2055,blat.proc3825156.chain_2060	3
scaffold_2	starts_in_intron	5196974	5196974	-	asmbl_23141	none	STRG.1937.1,blat.proc3825148.chain_1952	2	STRG.1937.2,blat.proc3825148.chain_1953	2
scaffold_15	starts_in_intron	3685559	3685559	-	asmbl_14108	none	blat.proc3825156.chain_2987	1	STRG.18149.2,STRG.18149.3,blat.proc3825156.chain_2988	3
scaffold_21	alt_donor	7607712	7607713	+	asmbl_28757	none	STRG.24303.2,blat.proc3825176.chain_1522	2	STRG.24303.1,blat.proc3825176.chain_1521	2
scaffold_2	retained_intron	15451380	15451457	+	asmbl_25043	none	blat.proc3825164.chain_2811	1	STRG.2500.1,STRG.2500.2,blat.proc3825164.chain_2804,blat.proc3825164.chain_2806,blat.proc3825164.chain_2807,blat.proc3825164.chain_2808,blat.proc3825164.chain_2809,blat.proc3825164.chain_2810,blat.proc3825164.chain_2812	9
scaffold_23	alt_donor	6618659	6618660	+	asmbl_31632	none	Trinity_GG_31628_c0_g1_i2,blat.proc3825176.chain_2887	2	STRG.26010.1,blat.proc3825176.chain_2886,blat.proc3825176.chain_2888	3
scaffold_8	alt_acceptor	16506262	16506263	-	asmbl_52413	none	blat.proc3825152.chain_2931	1	STRG.10629.5	1
scaffold_10	starts_in_intron	4057872	4057872	-	asmbl_4257	none	blat.proc3825154.chain_819	1	STRG.12246.1,STRG.12246.2,STRG.12246.3,STRG.12246.4,STRG.12246.6,STRG.12246.7,blat.proc3825154.chain_820,blat.proc3825154.chain_821,blat.proc3825154.chain_822,blat.proc3825154.chain_823,blat.proc3825154.chain_824	11
scaffold_14	retained_intron	12627333	12627465	-	asmbl_13585	none	blat.proc3825156.chain_2423	1	STRG.17582.1,STRG.17582.2,STRG.17582.3,STRG.17582.4,blat.proc3825156.chain_2416,blat.proc3825156.chain_2417,blat.proc3825156.chain_2418,blat.proc3825156.chain_2419,blat.proc3825156.chain_2420,blat.proc3825156.chain_2421,blat.proc3825156.chain_2422,blat.proc3825156.chain_2424	12
scaffold_21	alternate_exon	7924275	7927136	+	asmbl_28771	none	STRG.24330.3,blat.proc3825176.chain_1544	2	STRG.24330.4,blat.proc3825176.chain_1543	2
scaffold_1	skipped_exon	14363017	14365198	-	asmbl_909	none	STRG.1037.3	1	STRG.1037.2,blat.proc3825148.chain_1034	2
scaffold_2	retained_intron	14363482	14363566	-	asmbl_23599	none	blat.proc3825148.chain_2426	1	STRG.2439.1,blat.proc3825148.chain_2427	2
scaffold_5	alt_donor	18821439	18821440	+	asmbl_46291,asmbl_46292	none	STRG.7010.1,STRG.7010.2,blat.proc3825166.chain_3170	3	STRG.7010.3	1
scaffold_4	starts_in_intron	7992014	7992014	+	asmbl_41527	none	blat.proc3825166.chain_1082	1	STRG.4618.2,STRG.4618.3,blat.proc3825166.chain_1079	3
scaffold_14	retained_exon	15942712	15942776	+	asmbl_12651	none	STRG.17839.1	1	STRG.17839.2	1
scaffold_26	starts_in_intron	3430984	3430984	+	asmbl_34779	none	blat.proc3825178.chain_980	1	STRG.28024.1,blat.proc3825178.chain_982	2
scaffold_8	alt_donor	17764333	17764334	+	asmbl_53498	none	STRG.10691.1,Trinity_GG_23246_c0_g1_i2,blat.proc3825168.chain_3233	3	STRG.10691.2	1
scaffold_13	ends_in_intron	397227	397227	-	asmbl_9341,asmbl_9350	none	Trinity_GG_8688_c0_g2_i1,blat.proc3825156.chain_367,blat.proc3825156.chain_368	3	STRG.15444.1,STRG.15444.2,STRG.15444.3,STRG.15444.4,Trinity_GG_8688_c0_g1_i16,Trinity_GG_8688_c0_g1_i18,Trinity_GG_8688_c0_g1_i19,Trinity_GG_8688_c0_g1_i2,Trinity_GG_8688_c0_g1_i20,Trinity_GG_8688_c0_g1_i24,Trinity_GG_8688_c0_g1_i25,Trinity_GG_8688_c0_g1_i27,Trinity_GG_8688_c0_g1_i5,Trinity_GG_8688_c0_g1_i6,Trinity_GG_8688_c0_g2_i2,Trinity_GG_8688_c0_g2_i3,Trinity_GG_8688_c0_g2_i4,blat.proc3825156.chain_351,blat.proc3825156.chain_352,blat.proc3825156.chain_353,blat.proc3825156.chain_354,blat.proc3825156.chain_355,blat.proc3825156.chain_359,blat.proc3825156.chain_360,blat.proc3825156.chain_362,blat.proc3825156.chain_364,blat.proc3825156.chain_366,blat.proc3825156.chain_369,blat.proc3825156.chain_370,blat.proc3825156.chain_371	30
scaffold_3	retained_exon	14573434	14573502	-	asmbl_39399	none	STRG.3797.3	1	STRG.3797.1,STRG.3797.2,blat.proc3825148.chain_3740,blat.proc3825148.chain_3741,blat.proc3825148.chain_3742	5
scaffold_11	retained_exon	17086459	17086527	-	asmbl_7250,asmbl_7252	none	STRG.14373.3,blat.proc3825154.chain_2885	2	STRG.14373.1,blat.proc3825154.chain_2882,blat.proc3825154.chain_2886	3
scaffold_13	alternate_exon	11380238	11381630	-	asmbl_10089	none	STRG.16301.5	1	STRG.16301.2,STRG.16301.3,STRG.16301.4,blat.proc3825156.chain_1169,blat.proc3825156.chain_1170,blat.proc3825156.chain_1172,blat.proc3825156.chain_1173	7
scaffold_28	spliced_intron	575733	575994	-	asmbl_37916,asmbl_37919	none	STRG.29279.1,STRG.29279.2,blat.proc3825162.chain_2429	3	STRG.29279.3,blat.proc3825162.chain_2427	2
scaffold_7	alternate_exon	10552857	10552932	+	asmbl_50131	none	STRG.9232.2,Trinity_GG_22414_c0_g1_i1,blat.proc3825168.chain_1701	3	STRG.9232.1	1
scaffold_10	spliced_intron	761892	761975	-	asmbl_4004,asmbl_4005,asmbl_4007	none	STRG.11960.1,STRG.11960.2,Trinity_GG_6663_c0_g1_i1,Trinity_GG_6663_c0_g1_i3,blat.proc3825154.chain_531,blat.proc3825154.chain_532	6	Trinity_GG_6663_c0_g1_i2,blat.proc3825154.chain_530	2
scaffold_3	ends_in_intron	14763533	14763533	-	asmbl_39415	none	STRG.3820.4,Trinity_GG_2082_c2_g1_i1,blat.proc3825148.chain_3690	3	STRG.3820.2,STRG.3820.3	2
scaffold_1	starts_in_intron	14684352	14684352	-	asmbl_948	none	blat.proc3825148.chain_1072	1	STRG.1065.1,blat.proc3825148.chain_1073	2
scaffold_16	skipped_exon	5390548	5391466	-	asmbl_17093,asmbl_17094	none	STRG.19287.3,blat.proc3825158.chain_442	2	STRG.19287.1,blat.proc3825158.chain_440,blat.proc3825158.chain_441	3
scaffold_6	alt_acceptor	9846483	9846484	+	asmbl_47245	none	STRG.7828.2	1	STRG.7828.1,blat.proc3825168.chain_255	2
scaffold_1	alt_acceptor	2130521	2130522	+	asmbl_1533,asmbl_1535	none	STRG.147.1,STRG.147.2,blat.proc3825164.chain_255,blat.proc3825164.chain_256	4	STRG.147.3,blat.proc3825164.chain_257	2
scaffold_28	alternate_exon	5230414	5230887	-	asmbl_38261,asmbl_38264	none	STRG.29674.2,Trinity_GG_16632_c0_g1_i9,blat.proc3825162.chain_2849	3	Trinity_GG_16632_c0_g1_i2,blat.proc3825162.chain_2845	2
scaffold_1	spliced_intron	20742516	20742758	-	asmbl_1203	none	blat.proc3825148.chain_1414	1	blat.proc3825148.chain_1413	1
scaffold_19	starts_in_intron	13368726	13368726	+	asmbl_21873	none	Trinity_GG_29830_c0_g1_i1,blat.proc3825174.chain_3674	2	STRG.22656.1,Trinity_GG_29830_c0_g1_i2,blat.proc3825174.chain_3675	3
scaffold_15	starts_in_intron	4490636	4490636	+	asmbl_15147	none	blat.proc3825172.chain_2859	1	STRG.18177.1,STRG.18177.2,Trinity_GG_27286_c0_g1_i4,blat.proc3825172.chain_2854,blat.proc3825172.chain_2855,blat.proc3825172.chain_2856,blat.proc3825172.chain_2857,blat.proc3825172.chain_2858	8
scaffold_646	spliced_intron	4845	4952	-	asmbl_49493,asmbl_49494	none	STRG.30417.1,STRG.30417.3,blat.proc3825162.chain_3526,blat.proc3825162.chain_3527	4	STRG.30417.2,blat.proc3825162.chain_3525	2
scaffold_11	alternate_exon	8896441	8897254	-	asmbl_6885	none	blat.proc3825154.chain_2427	1	STRG.13911.2	1
scaffold_11	spliced_intron	11641334	11641468	+	asmbl_5980,asmbl_5983,asmbl_5989	none	STRG.14090.1,blat.proc3825170.chain_2633,blat.proc3825170.chain_2634,blat.proc3825170.chain_2639	4	blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2640	4
scaffold_20	starts_in_intron	8167859	8167859	+	asmbl_26749	none	blat.proc3825176.chain_501	1	STRG.23366.1,Trinity_GG_30189_c0_g1_i1,blat.proc3825176.chain_502	3
scaffold_21	starts_in_intron	1175016	1175016	-	asmbl_27386,asmbl_27389	none	STRG.23795.1,STRG.23795.3,Trinity_GG_13264_c0_g1_i2,blat.proc3825160.chain_930	4	STRG.23795.2,Trinity_GG_13264_c0_g1_i3,blat.proc3825160.chain_929	3
scaffold_20	alt_donor	11151201	11151202	-	asmbl_26142	none	STRG.23641.2,Trinity_GG_13166_c0_g1_i1,blat.proc3825160.chain_711	3	STRG.23641.1,Trinity_GG_13166_c0_g1_i2,blat.proc3825160.chain_712	3
scaffold_9	alt_acceptor	8032624	8032625	-	asmbl_55116	none	STRG.11231.3	1	STRG.11231.1,STRG.11231.2,blat.proc3825152.chain_3476,blat.proc3825152.chain_3477	4
scaffold_4	skipped_exon	10909209	10910700	-	asmbl_42868	none	STRG.4811.3	1	STRG.4811.1,STRG.4811.2,blat.proc3825150.chain_956	3
scaffold_21	spliced_intron	6817863	6818183	+	asmbl_28702,asmbl_28703	none	STRG.24217.2,blat.proc3825176.chain_1370,blat.proc3825176.chain_1371	3	STRG.24217.1,Trinity_GG_30700_c0_g1_i3,blat.proc3825176.chain_1369,blat.proc3825176.chain_1372	4
scaffold_24	alt_acceptor	10605500	10605501	+	asmbl_32578,asmbl_32579,asmbl_32580,asmbl_32583	none	STRG.27028.1,STRG.27028.2,STRG.27028.3,Trinity_GG_32236_c0_g1_i5,blat.proc3825178.chain_218,blat.proc3825178.chain_220,blat.proc3825178.chain_221	7	Trinity_GG_32236_c0_g1_i3,blat.proc3825178.chain_219	2
scaffold_2	alt_acceptor	3899363	3899364	+	asmbl_24321	none	blat.proc3825164.chain_2001	1	STRG.1826.1,STRG.1826.2,STRG.1826.3,blat.proc3825164.chain_1999,blat.proc3825164.chain_2000,blat.proc3825164.chain_2002,blat.proc3825164.chain_2003,blat.proc3825164.chain_2004	8
scaffold_20	alt_acceptor	10384959	10384960	+	asmbl_26960,asmbl_26962	none	STRG.23583.4,blat.proc3825176.chain_668	2	STRG.23583.1,STRG.23583.2,STRG.23583.3,Trinity_GG_30302_c0_g1_i1,Trinity_GG_30302_c0_g1_i2,blat.proc3825176.chain_670,blat.proc3825176.chain_671	7
scaffold_19	alt_acceptor	12822714	12822715	-	asmbl_22547	none	blat.proc3825158.chain_3413	1	STRG.22609.1,STRG.22609.2,blat.proc3825158.chain_3410,blat.proc3825158.chain_3411,blat.proc3825158.chain_3412,blat.proc3825158.chain_3415,blat.proc3825158.chain_3416	7
scaffold_3	alternate_exon	9845790	9847122	-	asmbl_39070	none	STRG.3462.2,blat.proc3825148.chain_3337	2	blat.proc3825148.chain_3336	1
scaffold_8	alt_donor	11637429	11637430	-	asmbl_52152	none	STRG.10374.3	1	STRG.10374.1,blat.proc3825152.chain_2598	2
scaffold_11	alt_donor	4716008	4716009	+	asmbl_5501	none	STRG.13556.3	1	STRG.13556.1,STRG.13556.2,blat.proc3825170.chain_2057	3
scaffold_506	alt_acceptor	4462	4463	+	asmbl_46501,asmbl_46502,asmbl_46503,asmbl_46504	none	STRG.30354.1,blat.proc3825178.chain_3450,blat.proc3825178.chain_3451,blat.proc3825178.chain_3453,blat.proc3825178.chain_3454	5	STRG.30354.2	1
scaffold_6	starts_in_intron	5378843	5378843	-	asmbl_48415	none	blat.proc3825150.chain_3688	1	STRG.7504.1,blat.proc3825150.chain_3687,blat.proc3825150.chain_3689	3
scaffold_19	spliced_intron	12972869	12973050	-	asmbl_22573,asmbl_22576,asmbl_22577	none	STRG.22618.1,Trinity_GG_12569_c0_g1_i1,Trinity_GG_12569_c0_g1_i3,Trinity_GG_12569_c0_g1_i4,blat.proc3825158.chain_3360,blat.proc3825158.chain_3362,blat.proc3825158.chain_3363	7	STRG.22618.3	1
scaffold_11	starts_in_intron	15833132	15833132	+	asmbl_6133	none	STRG.14321.2	1	STRG.14321.1,blat.proc3825170.chain_2800	2
scaffold_21	starts_in_intron	4257149	4257149	-	asmbl_27570	none	blat.proc3825160.chain_1129	1	STRG.24003.2	1
scaffold_6	alt_acceptor	594243	594244	-	asmbl_48046	none	STRG.7123.2	1	STRG.7123.1,blat.proc3825150.chain_3222	2
scaffold_26	spliced_intron	6721964	6722044	+	asmbl_35108	none	STRG.28365.1,blat.proc3825178.chain_1439	2	STRG.28365.2,blat.proc3825178.chain_1438	2
scaffold_2	retained_intron	8302850	8304172	+	asmbl_24625	none	STRG.2114.3,Trinity_GG_18510_c0_g1_i4,blat.proc3825164.chain_2309	3	STRG.2114.2,STRG.2114.4,blat.proc3825164.chain_2308,blat.proc3825164.chain_2311	4
scaffold_22	retained_exon	9158489	9158564	-	asmbl_29518,asmbl_29521	none	STRG.25251.2,Trinity_GG_14095_c0_g1_i2,blat.proc3825160.chain_2364	3	STRG.25251.1,blat.proc3825160.chain_2365	2
scaffold_27	alt_donor	1095311	1095312	+	asmbl_35990	none	STRG.28608.1,blat.proc3825178.chain_1752	2	blat.proc3825178.chain_1751	1
scaffold_4	retained_intron	19354511	19354584	-	asmbl_43437,asmbl_43439	none	Trinity_GG_3086_c0_g1_i9,blat.proc3825150.chain_1681	2	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	6
scaffold_15	alternate_exon	6193587	6193822	+	asmbl_15246,asmbl_15247	none	STRG.18283.1,STRG.18283.2	2	STRG.18283.4,STRG.18283.5	2
scaffold_5	alt_donor	18698560	18698561	-	asmbl_44854	none	STRG.6997.1	1	STRG.6997.2,STRG.6997.3	2
scaffold_2	starts_in_intron	15274008	15274008	+	asmbl_25013	none	blat.proc3825164.chain_2611	1	STRG.2486.1,Trinity_GG_18659_c1_g1_i2,blat.proc3825164.chain_2612,blat.proc3825164.chain_2613,blat.proc3825164.chain_2614,blat.proc3825164.chain_2615,blat.proc3825164.chain_2619,blat.proc3825164.chain_2621	8
scaffold_16	alternate_exon	12019116	12019210	-	asmbl_17381	none	blat.proc3825158.chain_755	1	STRG.19727.1,blat.proc3825158.chain_756	2
scaffold_7	spliced_intron	3955085	3955398	-	asmbl_50830,asmbl_50836,asmbl_50837,asmbl_50838	none	STRG.8794.2,blat.proc3825152.chain_1231,blat.proc3825152.chain_1232,blat.proc3825152.chain_1233,blat.proc3825152.chain_1235	5	blat.proc3825152.chain_1229	1
scaffold_20	skipped_exon	9517409	9519809	+	asmbl_26858	none	STRG.23488.1,blat.proc3825176.chain_607	2	STRG.23488.2,blat.proc3825176.chain_606	2
scaffold_10	skipped_exon	6017831	6019242	-	asmbl_4418	none	blat.proc3825154.chain_1006	1	STRG.12434.1,blat.proc3825154.chain_1005,blat.proc3825154.chain_1008	3
scaffold_24	starts_in_intron	6446237	6446237	+	asmbl_32316,asmbl_32317,asmbl_32318	none	STRG.26699.3,blat.proc3825176.chain_3614,blat.proc3825176.chain_3615	3	STRG.26699.1,STRG.26699.2,blat.proc3825176.chain_3611,blat.proc3825176.chain_3613,blat.proc3825176.chain_3617,blat.proc3825176.chain_3618,blat.proc3825176.chain_3620	7
scaffold_1	alternate_exon	11422524	11423300	+	asmbl_2103	none	STRG.751.1,blat.proc3825164.chain_894	2	STRG.751.2	1
scaffold_17	alt_donor	8000363	8000364	+	asmbl_18928	none	STRG.20417.2,Trinity_GG_28452_c0_g1_i2,blat.proc3825174.chain_1180	3	STRG.20417.1,Trinity_GG_28452_c0_g1_i1	2
scaffold_6	spliced_intron	12053399	12053576	-	asmbl_48784	none	STRG.7980.1,blat.proc3825152.chain_303	2	Trinity_GG_4489_c0_g1_i1,blat.proc3825152.chain_302	2
scaffold_23	alt_donor	5870395	5870396	-	asmbl_30954	none	STRG.25974.2,blat.proc3825160.chain_3158	2	STRG.25974.1,blat.proc3825160.chain_3159	2
scaffold_21	retained_intron	8000621	8001304	-	asmbl_27880	none	STRG.24336.4,blat.proc3825160.chain_1500	2	STRG.24336.3,blat.proc3825160.chain_1502	2
scaffold_25	alt_donor	5607629	5607630	-	asmbl_34267	none	STRG.27458.2	1	STRG.27458.1,Trinity_GG_15406_c0_g1_i1,blat.proc3825162.chain_837	3
scaffold_4	retained_exon	19752814	19752930	+	asmbl_42160	none	STRG.5564.1,Trinity_GG_20352_c0_g1_i3,blat.proc3825166.chain_1824	3	STRG.5564.2,STRG.5564.3,Trinity_GG_20352_c0_g1_i4,blat.proc3825166.chain_1825	4
scaffold_19	alternate_exon	1066054	1066175	-	asmbl_22018	none	STRG.21892.1	1	STRG.21892.2,blat.proc3825158.chain_2722	2
scaffold_6	alt_acceptor	13230105	13230106	+	asmbl_47507	none	STRG.8084.7	1	STRG.8084.1,STRG.8084.2,STRG.8084.3,STRG.8084.4,STRG.8084.5,STRG.8084.6,STRG.8084.8,blat.proc3825168.chain_570,blat.proc3825168.chain_571,blat.proc3825168.chain_572,blat.proc3825168.chain_573,blat.proc3825168.chain_574,blat.proc3825168.chain_575,blat.proc3825168.chain_576,blat.proc3825168.chain_577	15
scaffold_3	ends_in_intron	16444000	16444000	+	asmbl_40623	none	blat.proc3825166.chain_404	1	STRG.3922.1,STRG.3922.2,STRG.3922.3,blat.proc3825166.chain_403	4
scaffold_14	alt_donor	1608892	1608893	+	asmbl_11830	none	STRG.16804.1,Trinity_GG_26566_c0_g2_i2,blat.proc3825172.chain_1588	3	STRG.16804.2	1
scaffold_8	spliced_intron	11810388	11810529	+	asmbl_53266,asmbl_53268	none	STRG.10386.1,blat.proc3825168.chain_2984,blat.proc3825168.chain_2987	3	blat.proc3825168.chain_2986	1
scaffold_1	alternate_exon	19043527	19044100	+	asmbl_2582	none	STRG.1335.7	1	STRG.1335.1,STRG.1335.5,Trinity_GG_18101_c0_g1_i2	3
scaffold_7	skipped_exon	1387655	1389255	-	asmbl_50721	none	blat.proc3825152.chain_1117	1	STRG.8652.1,blat.proc3825152.chain_1118,blat.proc3825152.chain_1124	3
scaffold_947	alt_acceptor	3717	3718	+	asmbl_55848	none	STRG.30515.1	1	STRG.30515.2,blat.proc3825178.chain_3534	2
scaffold_1	alternate_exon	4586220	4586276	+	asmbl_1674	none	STRG.283.1,blat.proc3825164.chain_317	2	blat.proc3825164.chain_318	1
scaffold_12	retained_intron	15012722	15012846	-	asmbl_9032,asmbl_9034,asmbl_9036	none	STRG.15302.1,blat.proc3825156.chain_106,blat.proc3825156.chain_108,blat.proc3825156.chain_110	4	STRG.15302.2,blat.proc3825156.chain_107,blat.proc3825156.chain_109	3
scaffold_5	alternate_exon	4752082	4755038	+	asmbl_45294,asmbl_45295	none	STRG.5935.1,blat.proc3825166.chain_2142,blat.proc3825166.chain_2143	3	Trinity_GG_20552_c0_g1_i1	1
scaffold_2	alt_donor	3895423	3895424	-	asmbl_23013	none	STRG.1825.1,blat.proc3825148.chain_1759	2	STRG.1825.2,blat.proc3825148.chain_1760	2
scaffold_13	alt_donor	9535344	9535345	-	asmbl_10032	none	STRG.16216.2	1	STRG.16216.1,STRG.16216.3,STRG.16216.4,STRG.16216.5,blat.proc3825156.chain_1123,blat.proc3825156.chain_1124	6
scaffold_16	starts_in_intron	5969248	5969248	+	asmbl_16254,asmbl_16255	none	Trinity_GG_27886_c0_g1_i2,Trinity_GG_27886_c0_g1_i3,blat.proc3825174.chain_220,blat.proc3825174.chain_222	4	STRG.19330.1,blat.proc3825174.chain_221	2
scaffold_3	starts_in_intron	18144066	18144066	-	asmbl_39593,asmbl_39594	none	STRG.4029.2,blat.proc3825150.chain_207	2	STRG.4029.1,STRG.4029.3,blat.proc3825150.chain_208	3
scaffold_15	spliced_intron	11940228	11941598	-	asmbl_14538	none	STRG.18636.2,blat.proc3825156.chain_3460	2	blat.proc3825156.chain_3462	1
scaffold_9	alt_acceptor	4899429	4899430	+	asmbl_53968	none	STRG.11064.2	1	STRG.11064.1,blat.proc3825168.chain_3562	2
scaffold_28	skipped_exon	5017926	5018141	+	asmbl_37563,asmbl_37564	none	STRG.29654.1,STRG.29654.2,blat.proc3825178.chain_2773	3	STRG.29654.3	1
scaffold_18	retained_exon	4848999	4849092	+	asmbl_20569	none	STRG.21278.1,Trinity_GG_28997_c0_g1_i4,blat.proc3825174.chain_2170	3	STRG.21278.3,Trinity_GG_28997_c0_g1_i5,blat.proc3825174.chain_2169	3
scaffold_6	ends_in_intron	5047856	5047856	+	asmbl_46911	none	Trinity_GG_21345_c2_g1_i1,blat.proc3825166.chain_3563	2	STRG.7481.1	1
scaffold_16	ends_in_intron	5491852	5491852	+	asmbl_16220	none	Trinity_GG_27875_c1_g1_i1,blat.proc3825174.chain_196	2	STRG.19305.1	1
scaffold_9	alternate_exon	9760387	9760435	+	asmbl_54250	none	STRG.11351.3	1	STRG.11351.2	1
scaffold_2	retained_intron	14560511	14560687	+	asmbl_24949	none	Trinity_GG_18675_c0_g1_i21,blat.proc3825164.chain_2655	2	STRG.2464.1,STRG.2464.2,STRG.2464.3,blat.proc3825164.chain_2653,blat.proc3825164.chain_2654,blat.proc3825164.chain_2656,blat.proc3825164.chain_2657,blat.proc3825164.chain_2658,blat.proc3825164.chain_2662,blat.proc3825164.chain_2663,blat.proc3825164.chain_2665	11
scaffold_3	starts_in_intron	14334654	14334654	-	asmbl_39363,asmbl_39364	none	STRG.3780.1,STRG.3780.3,Trinity_GG_2051_c0_g1_i2,Trinity_GG_2051_c0_g1_i4,blat.proc3825148.chain_3626,blat.proc3825148.chain_3627	6	STRG.3780.2,Trinity_GG_2051_c0_g1_i1,blat.proc3825148.chain_3625	3
scaffold_14	spliced_intron	8694420	8694707	-	asmbl_13337,asmbl_13338,asmbl_13340	none	STRG.17305.1,blat.proc3825156.chain_2143,blat.proc3825156.chain_2144,blat.proc3825156.chain_2146	4	STRG.17305.2,blat.proc3825156.chain_2145	2
scaffold_11	alt_acceptor	176271	176272	+	asmbl_5264	none	Trinity_GG_24602_c0_g1_i3,blat.proc3825170.chain_1812	2	STRG.13247.1,STRG.13247.2,blat.proc3825170.chain_1813,blat.proc3825170.chain_1814	4
scaffold_23	starts_in_intron	2996156	2996156	-	asmbl_30767,asmbl_30770	none	Trinity_GG_14424_c0_g1_i7,blat.proc3825160.chain_2953,blat.proc3825160.chain_2955	3	STRG.25748.1,STRG.25748.4,STRG.25748.5	3
scaffold_25	retained_intron	6324156	6324245	-	asmbl_34357,asmbl_34360	none	STRG.27519.2,blat.proc3825162.chain_940,blat.proc3825162.chain_943	3	STRG.27519.1,blat.proc3825162.chain_938,blat.proc3825162.chain_942	3
scaffold_11	spliced_intron	8478872	8479288	+	asmbl_5783,asmbl_5789	none	STRG.13864.1,Trinity_GG_24888_c0_g1_i2,Trinity_GG_24888_c0_g1_i5,blat.proc3825170.chain_2291,blat.proc3825170.chain_2293	5	STRG.13864.3,blat.proc3825170.chain_2289	2
scaffold_8	starts_in_intron	6119677	6119677	+	asmbl_52946	none	Trinity_GG_22863_c0_g1_i3	1	STRG.10015.1,Trinity_GG_22863_c0_g1_i2,blat.proc3825168.chain_2541	3
scaffold_9	retained_exon	4898610	4898797	+	asmbl_53968	none	STRG.11064.2	1	STRG.11064.1	1
scaffold_17	alt_donor	1292411	1292412	-	asmbl_17679	none	STRG.19964.1,blat.proc3825158.chain_973	2	STRG.19964.4,blat.proc3825158.chain_972,blat.proc3825158.chain_975	3
scaffold_1	alt_acceptor	858332	858333	-	asmbl_26,asmbl_27,asmbl_29	none	STRG.44.1,STRG.44.2,blat.proc3825148.chain_41,blat.proc3825148.chain_43,blat.proc3825148.chain_44	5	blat.proc3825148.chain_42	1
scaffold_21	alt_donor	3124889	3124890	-	asmbl_27518	none	blat.proc3825160.chain_1059	1	STRG.23943.1	1
scaffold_3	alternate_exon	10628153	10629347	+	asmbl_40287,asmbl_40288	none	blat.proc3825164.chain_3683,blat.proc3825164.chain_3685	2	STRG.3513.3,blat.proc3825164.chain_3682	2
scaffold_5	spliced_intron	13162731	13162841	+	asmbl_45856	none	STRG.6552.1	1	STRG.6552.2	1
scaffold_5	alt_acceptor	18758399	18758400	-	asmbl_44874	none	STRG.7008.1,blat.proc3825150.chain_3109	2	STRG.7008.2	1
scaffold_7	starts_in_intron	12841112	12841112	-	asmbl_51268	none	STRG.9401.3,blat.proc3825152.chain_1745	2	STRG.9401.2,STRG.9401.4,blat.proc3825152.chain_1744,blat.proc3825152.chain_1746	4
scaffold_13	starts_in_intron	2875934	2875934	-	asmbl_9490	none	blat.proc3825156.chain_473	1	STRG.15590.1,blat.proc3825156.chain_475	2
scaffold_18	starts_in_intron	7536396	7536396	+	asmbl_20749	none	blat.proc3825174.chain_2481	1	STRG.21457.1,blat.proc3825174.chain_2482	2
scaffold_7	skipped_exon	9864000	9864641	-	asmbl_51092	none	STRG.9189.1,blat.proc3825152.chain_1466	2	STRG.9189.3,blat.proc3825152.chain_1468	2
scaffold_3	alternate_exon	14491459	14497863	-	asmbl_39378	none	STRG.3790.1,Trinity_GG_2093_c0_g2_i1,blat.proc3825148.chain_3723	3	Trinity_GG_2093_c1_g1_i2,blat.proc3825148.chain_3722	2
scaffold_26	starts_in_intron	5894442	5894442	-	asmbl_35641	none	blat.proc3825162.chain_1469	1	STRG.28301.1,STRG.28301.2,STRG.28301.3,Trinity_GG_15800_c0_g1_i8,blat.proc3825162.chain_1468,blat.proc3825162.chain_1471,blat.proc3825162.chain_1472,blat.proc3825162.chain_1473	8
scaffold_6	retained_exon	2484402	2484433	+	asmbl_46754,asmbl_46755,asmbl_46759	none	STRG.7248.5,STRG.7248.6,blat.proc3825166.chain_3499	3	STRG.7248.1,STRG.7248.4,blat.proc3825166.chain_3496	3
scaffold_10	alt_acceptor	1621533	1621534	+	asmbl_2954,asmbl_2955	none	STRG.12026.4,STRG.12026.5	2	STRG.12026.1,STRG.12026.2,STRG.12026.3,STRG.12026.6,Trinity_GG_23966_c0_g1_i3,Trinity_GG_23966_c0_g1_i4,Trinity_GG_23966_c0_g1_i7,Trinity_GG_23966_c0_g1_i8,Trinity_GG_23966_c0_g1_i9,blat.proc3825170.chain_713,blat.proc3825170.chain_714,blat.proc3825170.chain_715,blat.proc3825170.chain_716,blat.proc3825170.chain_717	14
scaffold_28	retained_intron	3167478	3167541	+	asmbl_37451,asmbl_37452	none	STRG.29529.2,STRG.29529.3	2	blat.proc3825162.chain_2706	1
scaffold_5	starts_in_intron	6848912	6848912	+	asmbl_45451	none	Trinity_GG_20593_c0_g1_i3,blat.proc3825166.chain_2226	2	STRG.6094.1,blat.proc3825166.chain_2225,blat.proc3825166.chain_2227	3
scaffold_1	alt_donor	4225778	4225779	+	asmbl_1640	none	STRG.254.1,blat.proc3825164.chain_377,blat.proc3825164.chain_379	3	blat.proc3825164.chain_380	1
scaffold_7	spliced_intron	8296258	8296345	-	asmbl_50993,asmbl_50996	none	STRG.9066.2,STRG.9066.3,blat.proc3825152.chain_1452,blat.proc3825152.chain_1453	4	Trinity_GG_5116_c0_g1_i4,blat.proc3825152.chain_1455	2
scaffold_15	alt_acceptor	165822	165823	+	asmbl_14948	none	STRG.17873.1	1	STRG.17873.2	1
scaffold_13	ends_in_intron	14154044	14154044	+	asmbl_11427,asmbl_11428	none	Trinity_GG_26389_c0_g1_i2,blat.proc3825172.chain_1272,blat.proc3825172.chain_1275	3	STRG.16461.1,Trinity_GG_26389_c0_g1_i1,blat.proc3825172.chain_1273	3
scaffold_16	retained_intron	125457	125550	+	asmbl_15998,asmbl_15999	none	Trinity_GG_27742_c0_g1_i1,Trinity_GG_27742_c0_g1_i4,blat.proc3825172.chain_3682,blat.proc3825172.chain_3684	4	STRG.19007.1,Trinity_GG_27742_c0_g1_i3,blat.proc3825172.chain_3683	3
scaffold_2074	alt_donor	920	921	-	asmbl_27254	none	STRG.30702.2,Trinity_GG_17228_c0_g1_i1,blat.proc3825162.chain_3724	3	STRG.30702.1,Trinity_GG_17228_c0_g1_i2,blat.proc3825162.chain_3725	3
scaffold_2	spliced_intron	7324282	7325889	+	asmbl_24564	none	STRG.2062.2	1	STRG.2062.1,Trinity_GG_18498_c0_g1_i3,Trinity_GG_18498_c0_g1_i4,blat.proc3825164.chain_2280,blat.proc3825164.chain_2281	5
scaffold_6	retained_intron	3805997	3806086	+	asmbl_46864,asmbl_46867,asmbl_46868	none	STRG.7383.1,STRG.7383.3,Trinity_GG_21370_c0_g1_i10,blat.proc3825166.chain_3604	4	Trinity_GG_21370_c0_g1_i12,blat.proc3825166.chain_3609	2
scaffold_16	spliced_intron	327833	327983	-	asmbl_16855,asmbl_16858,asmbl_16860	none	STRG.19029.1,blat.proc3825158.chain_169,blat.proc3825158.chain_171,blat.proc3825158.chain_172	4	STRG.19029.2,blat.proc3825158.chain_167,blat.proc3825158.chain_168,blat.proc3825158.chain_170	4
scaffold_26	alternate_exon	7486155	7486194	-	asmbl_35709	none	blat.proc3825162.chain_1611	1	STRG.28383.1,blat.proc3825162.chain_1609,blat.proc3825162.chain_1610	3
scaffold_11	starts_in_intron	3784846	3784846	-	asmbl_6581	none	blat.proc3825154.chain_2039	1	STRG.13505.1,blat.proc3825154.chain_2038	2
scaffold_1	spliced_intron	19006302	19006412	+	asmbl_2573,asmbl_2574	none	STRG.1324.2,STRG.1324.3	2	STRG.1324.4	1
scaffold_18	alt_donor	281385	281386	+	asmbl_20287,asmbl_20288	none	STRG.20984.1,STRG.20984.4,blat.proc3825174.chain_1902,blat.proc3825174.chain_1903	4	STRG.20984.2,Trinity_GG_28852_c1_g1_i1,blat.proc3825174.chain_1904	3
scaffold_21	ends_in_intron	1754603	1754603	-	asmbl_27420,asmbl_27424	none	STRG.23823.3,blat.proc3825160.chain_963	2	STRG.23823.1,STRG.23823.2,blat.proc3825160.chain_962	3
scaffold_7	retained_exon	8586151	8586177	+	asmbl_50021	none	STRG.9086.1	1	STRG.9086.2	1
scaffold_18	spliced_intron	823947	824156	+	asmbl_20327,asmbl_20329	none	STRG.21008.1,blat.proc3825174.chain_1871,blat.proc3825174.chain_1872	3	STRG.21008.2,STRG.21008.3,blat.proc3825174.chain_1873,blat.proc3825174.chain_1874	4
scaffold_28	alt_acceptor	296270	296271	+	asmbl_37270,asmbl_37271	none	STRG.29263.2,blat.proc3825178.chain_2489	2	STRG.29263.1,STRG.29263.3,blat.proc3825178.chain_2488,blat.proc3825178.chain_2490,blat.proc3825178.chain_2491,blat.proc3825178.chain_2492	6
scaffold_11	alt_donor	3796435	3796436	-	asmbl_6584	none	STRG.13500.2,blat.proc3825154.chain_2065	2	STRG.13500.1,blat.proc3825154.chain_2064	2
scaffold_17	spliced_intron	3986624	3986812	-	asmbl_17835,asmbl_17836	none	STRG.20158.1,STRG.20158.2,blat.proc3825158.chain_1214	3	Trinity_GG_11334_c2_g1_i1,blat.proc3825158.chain_1215,blat.proc3825158.chain_1216	3
scaffold_3	spliced_intron	9517588	9517928	+	asmbl_40230	none	blat.proc3825164.chain_3673	1	STRG.3436.2,Trinity_GG_19245_c0_g1_i2,blat.proc3825164.chain_3674,blat.proc3825164.chain_3677	4
scaffold_10	spliced_intron	11603598	11603890	+	asmbl_3474,asmbl_3475,asmbl_3476,asmbl_3477,asmbl_3480,asmbl_3485,asmbl_3486	none	STRG.12815.1,STRG.12815.2,STRG.12815.3,STRG.12815.4,blat.proc3825170.chain_1423,blat.proc3825170.chain_1424,blat.proc3825170.chain_1426,blat.proc3825170.chain_1427,blat.proc3825170.chain_1428,blat.proc3825170.chain_1429	10	STRG.12815.5,Trinity_GG_24381_c0_g2_i1,blat.proc3825170.chain_1430	3
scaffold_13	retained_intron	13868019	13868068	+	asmbl_11411	none	STRG.16439.1,blat.proc3825156.chain_1285	2	STRG.16439.2	1
scaffold_4	alt_acceptor	6246856	6246857	+	asmbl_41381,asmbl_41382	none	STRG.4494.1,STRG.4494.2,blat.proc3825166.chain_945	3	STRG.4494.3,blat.proc3825166.chain_943	2
scaffold_5	ends_in_intron	15418209	15418209	-	asmbl_44669	none	Trinity_GG_3756_c0_g1_i1,blat.proc3825150.chain_2879	2	STRG.6728.1,STRG.6728.3,blat.proc3825150.chain_2880	3
scaffold_10	alt_donor	2765247	2765248	-	asmbl_4126,asmbl_4127	none	STRG.12095.1,blat.proc3825154.chain_647	2	STRG.12095.2,STRG.12095.3,blat.proc3825154.chain_648,blat.proc3825154.chain_649	4
scaffold_28	retained_exon	7238011	7238146	+	asmbl_37646	none	STRG.29786.1,blat.proc3825178.chain_2923	2	Trinity_GG_33802_c0_g1_i2,blat.proc3825178.chain_2924	2
scaffold_14	skipped_exon	3156204	3157076	+	asmbl_11913,asmbl_11914,asmbl_11916,asmbl_11922,asmbl_11923	none	Trinity_GG_26576_c0_g1_i11,Trinity_GG_26576_c0_g1_i15,Trinity_GG_26576_c0_g1_i7,blat.proc3825172.chain_1602,blat.proc3825172.chain_1603,blat.proc3825172.chain_1605,blat.proc3825172.chain_1607,blat.proc3825172.chain_1610	8	STRG.16908.1,STRG.16908.2,STRG.16908.3,Trinity_GG_26576_c0_g1_i12,Trinity_GG_26576_c0_g1_i16,Trinity_GG_26576_c0_g1_i17,Trinity_GG_26576_c0_g1_i4,blat.proc3825172.chain_1601,blat.proc3825172.chain_1604,blat.proc3825172.chain_1606,blat.proc3825172.chain_1608,blat.proc3825172.chain_1609,blat.proc3825172.chain_1611	13
scaffold_5	starts_in_intron	3982710	3982710	-	asmbl_43940	none	blat.proc3825150.chain_2020	1	STRG.5871.1,blat.proc3825150.chain_2019,blat.proc3825150.chain_2021	3
scaffold_25	retained_intron	5776337	5776529	+	asmbl_33577,asmbl_33580	none	STRG.27472.1,blat.proc3825178.chain_588	2	STRG.27472.2	1
scaffold_1	starts_in_intron	6284586	6284586	-	asmbl_339,asmbl_341	none	blat.proc3825148.chain_410,blat.proc3825148.chain_414	2	STRG.423.1,STRG.423.2,STRG.423.3,STRG.423.5,Trinity_GG_229_c0_g1_i9,blat.proc3825148.chain_411,blat.proc3825148.chain_412,blat.proc3825148.chain_417,blat.proc3825148.chain_418	9
scaffold_5	alt_donor	15418243	15418244	-	asmbl_44666	none	STRG.6728.3	1	STRG.6728.1,blat.proc3825150.chain_2880	2
scaffold_23	alternate_exon	10831789	10831869	+	asmbl_31875	none	STRG.26281.2	1	STRG.26281.1,blat.proc3825176.chain_3266	2
scaffold_6	retained_intron	12413720	12414317	-	asmbl_48801,asmbl_48802,asmbl_48803,asmbl_48805	none	STRG.7996.1,STRG.7996.2,STRG.7996.4,STRG.7996.5,blat.proc3825152.chain_392,blat.proc3825152.chain_393,blat.proc3825152.chain_394	7	STRG.7996.3	1
scaffold_14	retained_intron	399142	399371	+	asmbl_11749,asmbl_11751	none	STRG.16734.5,STRG.16734.6	2	STRG.16734.3,Trinity_GG_26526_c0_g1_i10,Trinity_GG_26526_c0_g1_i18,blat.proc3825172.chain_1507,blat.proc3825172.chain_1514	5
scaffold_17	alt_donor	12090132	12090133	+	asmbl_19258	none	STRG.20737.3	1	STRG.20737.2	1
scaffold_10	skipped_exon	4057467	4058495	-	asmbl_4253,asmbl_4254,asmbl_4256	none	STRG.12246.1,STRG.12246.3,STRG.12246.6,blat.proc3825154.chain_820,blat.proc3825154.chain_823	5	STRG.12246.2,STRG.12246.4,blat.proc3825154.chain_822,blat.proc3825154.chain_824	4
scaffold_10	retained_intron	13300486	13300597	+	asmbl_3592	none	blat.proc3825170.chain_1458	1	STRG.12924.1,blat.proc3825170.chain_1459,blat.proc3825170.chain_1460	3
scaffold_17	alt_donor	7855513	7855514	-	asmbl_18062	none	STRG.20413.1,Trinity_GG_11480_c0_g1_i1,blat.proc3825158.chain_1453	3	STRG.20413.2	1
scaffold_6	alternate_exon	14472061	14472120	-	asmbl_49010	none	STRG.8209.3	1	STRG.8209.2,Trinity_GG_4640_c0_g1_i2,blat.proc3825152.chain_582	3
scaffold_7	starts_in_intron	13219763	13219763	+	asmbl_50331	none	STRG.9435.2	1	STRG.9435.1	1
scaffold_6	starts_in_intron	15085636	15085636	-	asmbl_49048	none	Trinity_GG_4678_c0_g1_i2,blat.proc3825152.chain_662	2	STRG.8272.1,Trinity_GG_4678_c0_g1_i1,Trinity_GG_4678_c0_g1_i4,blat.proc3825152.chain_663,blat.proc3825152.chain_664	5
scaffold_23	ends_in_intron	2036309	2036309	+	asmbl_31372	none	STRG.25686.2,blat.proc3825176.chain_2600	2	STRG.25686.1,blat.proc3825176.chain_2601,blat.proc3825176.chain_2602,blat.proc3825176.chain_2603	4
scaffold_20	spliced_intron	7473965	7474216	-	asmbl_25905,asmbl_25907,asmbl_25908,asmbl_25909,asmbl_25911,asmbl_25912	none	STRG.23312.1,blat.proc3825160.chain_460,blat.proc3825160.chain_461,blat.proc3825160.chain_462,blat.proc3825160.chain_463,blat.proc3825160.chain_465,blat.proc3825160.chain_467	7	blat.proc3825160.chain_466	1
scaffold_14	alt_acceptor	8306299	8306300	+	asmbl_12218,asmbl_12220	none	STRG.17257.1,blat.proc3825172.chain_2010,blat.proc3825172.chain_2012	3	STRG.17257.2	1
scaffold_9	alt_acceptor	11876875	11876876	+	asmbl_54388	none	Trinity_GG_23736_c0_g1_i2,blat.proc3825170.chain_329	2	STRG.11509.1	1
scaffold_6	retained_exon	3320658	3320770	-	asmbl_48245	none	STRG.7338.1,STRG.7338.3	2	STRG.7338.4,blat.proc3825150.chain_3424,blat.proc3825150.chain_3425	3
scaffold_1	retained_exon	6284588	6284661	-	asmbl_335,asmbl_337,asmbl_342,asmbl_344	none	STRG.423.1,STRG.423.5,Trinity_GG_229_c0_g1_i9,blat.proc3825148.chain_412,blat.proc3825148.chain_417,blat.proc3825148.chain_418	6	STRG.423.2,STRG.423.3,blat.proc3825148.chain_411	3
scaffold_2	alt_acceptor	16414057	16414058	-	asmbl_23688,asmbl_23690,asmbl_23691,asmbl_23693	none	STRG.2587.1,blat.proc3825148.chain_2556,blat.proc3825148.chain_2558,blat.proc3825148.chain_2559,blat.proc3825148.chain_2560	5	STRG.2587.2	1
scaffold_21	skipped_exon	736707	738287	+	asmbl_28295	none	STRG.23768.1,Trinity_GG_30477_c0_g1_i2,blat.proc3825176.chain_975	3	STRG.23768.2,blat.proc3825176.chain_976	2
scaffold_9	starts_in_intron	9636741	9636741	-	asmbl_55223	none	Trinity_GG_6250_c0_g2_i3,blat.proc3825152.chain_3524	2	STRG.11335.1,Trinity_GG_6250_c0_g2_i1,blat.proc3825152.chain_3525	3
scaffold_18	retained_exon	3918127	3918211	-	asmbl_19783	none	STRG.21203.4	1	STRG.21203.5	1
scaffold_8	retained_exon	11463927	11463996	+	asmbl_53228	none	STRG.10352.2	1	STRG.10352.1,blat.proc3825168.chain_2932	2
scaffold_2	retained_intron	15266613	15266717	+	asmbl_24996,asmbl_24997,asmbl_24999,asmbl_25000,asmbl_25001,asmbl_25003,asmbl_25004	none	STRG.2485.1,STRG.2485.2,blat.proc3825164.chain_2601,blat.proc3825164.chain_2602,blat.proc3825164.chain_2603,blat.proc3825164.chain_2604,blat.proc3825164.chain_2605,blat.proc3825164.chain_2607,blat.proc3825164.chain_2608	9	STRG.2485.3,blat.proc3825164.chain_2606	2
scaffold_2	retained_intron	899248	899414	+	asmbl_24148,asmbl_24151	none	STRG.1569.2,Trinity_GG_18211_c0_g1_i4,blat.proc3825164.chain_1718	3	STRG.1569.1,STRG.1569.3,Trinity_GG_18211_c0_g1_i3,blat.proc3825164.chain_1717,blat.proc3825164.chain_1721,blat.proc3825164.chain_1722	6
scaffold_22	ends_in_intron	320922	320922	+	asmbl_29844	none	blat.proc3825176.chain_1818	1	STRG.24686.1,STRG.24686.2,STRG.24686.3,blat.proc3825176.chain_1815,blat.proc3825176.chain_1816,blat.proc3825176.chain_1817,blat.proc3825176.chain_1819	7
scaffold_17	alt_acceptor	9240503	9240504	+	asmbl_19072	none	STRG.20548.2,Trinity_GG_28574_c0_g1_i3,blat.proc3825174.chain_1423	3	STRG.20548.1,Trinity_GG_28574_c0_g1_i2,blat.proc3825174.chain_1421	3
scaffold_20	starts_in_intron	9646811	9646811	+	asmbl_26875	none	STRG.23505.2,blat.proc3825176.chain_640	2	STRG.23505.1,blat.proc3825176.chain_639	2
scaffold_16	ends_in_intron	5802574	5802574	+	asmbl_16231	none	Trinity_GG_27849_c0_g1_i2,blat.proc3825174.chain_147	2	STRG.19326.1,STRG.19326.3,Trinity_GG_27849_c0_g1_i1,Trinity_GG_27849_c0_g1_i4,blat.proc3825174.chain_148,blat.proc3825174.chain_150	6
scaffold_13	ends_in_intron	8804969	8804969	-	asmbl_9979	none	Trinity_GG_9086_c0_g1_i7,blat.proc3825156.chain_1069	2	STRG.16153.4,blat.proc3825156.chain_1065,blat.proc3825156.chain_1067,blat.proc3825156.chain_1070,blat.proc3825156.chain_1072	5
scaffold_11	alt_donor	7804304	7804305	-	asmbl_6807	none	STRG.13783.1,blat.proc3825154.chain_2366	2	STRG.13783.2,blat.proc3825154.chain_2367	2
scaffold_7	retained_exon	5097305	5097364	+	asmbl_49782	none	STRG.8853.1,blat.proc3825168.chain_1322	2	STRG.8853.2,blat.proc3825168.chain_1321	2
scaffold_9	starts_in_intron	2799806	2799806	+	asmbl_53866	none	blat.proc3825168.chain_3428	1	STRG.10918.2,STRG.10918.4,Trinity_GG_23372_c0_g1_i5,blat.proc3825168.chain_3431	4
scaffold_2	alternate_exon	6210522	6210940	-	asmbl_23183	none	STRG.1987.2,Trinity_GG_1080_c3_g1_i1,blat.proc3825148.chain_1936	3	STRG.1987.1,blat.proc3825148.chain_1932,blat.proc3825148.chain_1933	3
scaffold_7	starts_in_intron	12437023	12437023	+	asmbl_50264,asmbl_50266	none	STRG.9343.2,blat.proc3825168.chain_1882,blat.proc3825168.chain_1883	3	STRG.9343.1	1
scaffold_4	retained_intron	4692423	4692526	+	asmbl_41297	none	blat.proc3825166.chain_813	1	STRG.4379.1,blat.proc3825166.chain_814,blat.proc3825166.chain_816,blat.proc3825166.chain_817,blat.proc3825166.chain_818,blat.proc3825166.chain_819,blat.proc3825166.chain_820	7
scaffold_16	retained_intron	12642114	12642264	-	asmbl_17396	none	Trinity_GG_11067_c0_g1_i6,blat.proc3825158.chain_799	2	STRG.19758.2,blat.proc3825158.chain_800	2
scaffold_3	ends_in_intron	4287322	4287322	+	asmbl_39998	none	blat.proc3825164.chain_3302	1	STRG.3135.1	1
scaffold_13	retained_intron	4462344	4462579	-	asmbl_9632	none	Trinity_GG_8857_c1_g1_i1,blat.proc3825156.chain_637	2	STRG.15771.1,STRG.15771.2,blat.proc3825156.chain_636	3
scaffold_7	alt_acceptor	13962753	13962754	+	asmbl_50395	none	blat.proc3825168.chain_2027	1	STRG.9495.1,STRG.9495.2,STRG.9495.3,Trinity_GG_22592_c0_g1_i1,Trinity_GG_22592_c0_g1_i2,blat.proc3825168.chain_2024,blat.proc3825168.chain_2025,blat.proc3825168.chain_2026	8
scaffold_21	alternate_exon	1756164	1759301	-	asmbl_27419	none	STRG.23823.2,Trinity_GG_13284_c3_g1_i1,blat.proc3825160.chain_966	3	STRG.23823.3	1
scaffold_20	alternate_exon	11378431	11378527	+	asmbl_27038	none	STRG.23648.6	1	STRG.23648.1,STRG.23648.2,STRG.23648.3,STRG.23648.4,STRG.23648.5,Trinity_GG_30352_c0_g1_i1,Trinity_GG_30352_c0_g1_i3,blat.proc3825176.chain_757,blat.proc3825176.chain_759	9
scaffold_17	spliced_intron	538675	539184	+	asmbl_18545	none	STRG.19902.2	1	STRG.19902.3,blat.proc3825174.chain_784,blat.proc3825174.chain_786	3
scaffold_24	retained_intron	30069	30109	+	asmbl_32002	none	STRG.26314.2	1	STRG.26314.1	1
scaffold_9	retained_intron	16560431	16561320	-	asmbl_55580,asmbl_55581	none	STRG.11806.3,STRG.11806.6,Trinity_GG_6524_c2_g1_i1,blat.proc3825154.chain_278	4	STRG.11806.4,STRG.11806.5	2
scaffold_24	starts_in_intron	7852306	7852306	+	asmbl_32399	none	Trinity_GG_32143_c0_g1_i2,blat.proc3825178.chain_34	2	blat.proc3825178.chain_33	1
scaffold_14	alternate_exon	9499931	9500122	+	asmbl_12287	none	STRG.17343.1,Trinity_GG_26861_c0_g1_i2,Trinity_GG_26861_c0_g1_i3,blat.proc3825172.chain_2114	4	STRG.17343.2	1
scaffold_8	retained_intron	5968674	5968800	+	asmbl_52918	none	blat.proc3825168.chain_2578	1	STRG.10007.1,blat.proc3825168.chain_2579	2
scaffold_2	ends_in_intron	15263024	15263024	+	asmbl_24995	none	blat.proc3825164.chain_2585	1	STRG.2484.1,blat.proc3825164.chain_2587,blat.proc3825164.chain_2588	3
scaffold_22	alt_acceptor	728460	728461	+	asmbl_29885	none	STRG.24725.2	1	STRG.24725.1,Trinity_GG_30978_c0_g1_i1,blat.proc3825176.chain_1844	3
scaffold_11	spliced_intron	8719314	8719523	-	asmbl_6873	none	Trinity_GG_7765_c0_g1_i2,blat.proc3825154.chain_2440	2	Trinity_GG_7765_c0_g1_i7,blat.proc3825154.chain_2438	2
scaffold_8	retained_intron	7984216	7984342	-	asmbl_51940	none	blat.proc3825152.chain_2366	1	STRG.10096.1,blat.proc3825152.chain_2364,blat.proc3825152.chain_2365	3
scaffold_19	alt_acceptor	11902323	11902324	-	asmbl_22438	none	STRG.22513.1	1	STRG.22513.2,blat.proc3825158.chain_3270	2
scaffold_5	skipped_exon	9084795	9085017	+	asmbl_45606,asmbl_45607	none	blat.proc3825166.chain_2476,blat.proc3825166.chain_2477	2	STRG.6247.1,STRG.6247.2,blat.proc3825166.chain_2474,blat.proc3825166.chain_2475,blat.proc3825166.chain_2479,blat.proc3825166.chain_2481	6
scaffold_6	spliced_intron	9170836	9170927	+	asmbl_47225	none	STRG.7793.1,Trinity_GG_21600_c0_g1_i1,blat.proc3825168.chain_265	3	Trinity_GG_21600_c0_g1_i2,blat.proc3825168.chain_266	2
scaffold_16	spliced_intron	8042887	8043037	+	asmbl_16370,asmbl_16374	none	STRG.19448.2,blat.proc3825174.chain_275,blat.proc3825174.chain_278	3	STRG.19448.1,Trinity_GG_27912_c0_g1_i2,Trinity_GG_27912_c0_g1_i5,Trinity_GG_27912_c0_g1_i6,blat.proc3825174.chain_274,blat.proc3825174.chain_276,blat.proc3825174.chain_277	7
scaffold_11	alt_donor	13554164	13554165	-	asmbl_7137	none	STRG.14212.1,blat.proc3825154.chain_2702	2	blat.proc3825154.chain_2703	1
scaffold_15	alt_donor	15443734	15443735	+	asmbl_15795	none	STRG.18935.2	1	STRG.18935.1,blat.proc3825172.chain_3624	2
scaffold_15	ends_in_intron	13997488	13997488	-	asmbl_14698	none	Trinity_GG_10586_c0_g1_i3,blat.proc3825156.chain_3694	2	STRG.18835.1	1
scaffold_27	starts_in_intron	2823021	2823021	-	asmbl_36861	none	blat.proc3825162.chain_2010	1	STRG.28765.1,blat.proc3825162.chain_2011,blat.proc3825162.chain_2012,blat.proc3825162.chain_2013	4
scaffold_26	spliced_intron	5045239	5045524	+	asmbl_34937,asmbl_34943,asmbl_34947,asmbl_34949,asmbl_34952,asmbl_34955,asmbl_34957	none	STRG.28240.1,blat.proc3825178.chain_1166,blat.proc3825178.chain_1167,blat.proc3825178.chain_1170,blat.proc3825178.chain_1173,blat.proc3825178.chain_1174,blat.proc3825178.chain_1176,blat.proc3825178.chain_1179	8	blat.proc3825178.chain_1168,blat.proc3825178.chain_1171	2
scaffold_22	spliced_intron	506433	506518	-	asmbl_29092,asmbl_29094,asmbl_29099,asmbl_29101,asmbl_29102,asmbl_29103	none	STRG.24702.1,STRG.24702.5,Trinity_GG_13790_c0_g1_i10,Trinity_GG_13790_c0_g1_i14,Trinity_GG_13790_c0_g1_i15,Trinity_GG_13790_c0_g1_i4,Trinity_GG_13790_c0_g1_i5,Trinity_GG_13790_c0_g1_i8,blat.proc3825160.chain_1860,blat.proc3825160.chain_1863,blat.proc3825160.chain_1865,blat.proc3825160.chain_1866,blat.proc3825160.chain_1867,blat.proc3825160.chain_1869	14	Trinity_GG_13790_c0_g1_i9,blat.proc3825160.chain_1861	2
scaffold_21	alt_acceptor	7503974	7503975	-	asmbl_27830,asmbl_27831,asmbl_27832	none	STRG.24282.2,STRG.24282.3,STRG.24282.4	3	STRG.24282.1,blat.proc3825160.chain_1439,blat.proc3825160.chain_1440	3
scaffold_6	alternate_exon	12207341	12207500	+	asmbl_47383	none	STRG.7991.1,Trinity_GG_21695_c0_g1_i3,Trinity_GG_21695_c0_g1_i4,blat.proc3825168.chain_455,blat.proc3825168.chain_457	5	STRG.7991.2,Trinity_GG_21695_c0_g1_i1,blat.proc3825168.chain_456	3
scaffold_1	alt_acceptor	11096486	11096487	+	asmbl_2058	none	STRG.726.2	1	Trinity_GG_17769_c0_g1_i4	1
scaffold_13	spliced_intron	3429569	3429691	+	asmbl_10690,asmbl_10691	none	STRG.15654.1,Trinity_GG_25887_c0_g1_i1,Trinity_GG_25887_c0_g1_i3,blat.proc3825172.chain_352,blat.proc3825172.chain_354	5	STRG.15654.2,Trinity_GG_25887_c0_g1_i4,blat.proc3825172.chain_351	3
scaffold_19	retained_intron	2780819	2780920	+	asmbl_21277,asmbl_21279,asmbl_21281	none	STRG.21962.3,STRG.21962.4,Trinity_GG_29459_c0_g1_i7,blat.proc3825174.chain_3000	4	STRG.21962.1,STRG.21962.5,blat.proc3825174.chain_2998	3
scaffold_10	alt_donor	337691	337692	-	asmbl_3932,asmbl_3934,asmbl_3935,asmbl_3936	none	STRG.11918.1,STRG.11918.2,STRG.11918.3,Trinity_GG_6626_c0_g1_i4,blat.proc3825154.chain_441,blat.proc3825154.chain_442,blat.proc3825154.chain_443,blat.proc3825154.chain_444	8	STRG.11918.4	1
scaffold_21	alternate_exon	8004586	8004778	+	asmbl_28776	none	STRG.24337.2,blat.proc3825176.chain_1553	2	STRG.24337.1,blat.proc3825176.chain_1555	2
scaffold_1	starts_in_intron	8634660	8634660	-	asmbl_460,asmbl_464	none	blat.proc3825148.chain_546,blat.proc3825148.chain_548	2	STRG.571.1,STRG.571.2,STRG.571.3,blat.proc3825148.chain_545	4
scaffold_8	ends_in_intron	3329174	3329174	+	asmbl_52756	none	Trinity_GG_22780_c0_g2_i2,blat.proc3825168.chain_2366	2	STRG.9835.1,blat.proc3825168.chain_2365	2
scaffold_17	spliced_intron	9006765	9006969	+	asmbl_19055,asmbl_19058	none	STRG.20525.1,blat.proc3825174.chain_1320,blat.proc3825174.chain_1322	3	blat.proc3825174.chain_1323	1
scaffold_5	retained_intron	19440530	19440725	+	asmbl_46320	none	Trinity_GG_21175_c0_g1_i1,blat.proc3825166.chain_3234	2	STRG.7040.1,Trinity_GG_21175_c0_g1_i4,blat.proc3825166.chain_3233	3
scaffold_5	ends_in_intron	5869317	5869317	+	asmbl_45376	none	blat.proc3825166.chain_2228	1	STRG.6007.1,blat.proc3825166.chain_2229	2
scaffold_21	starts_in_intron	6536888	6536888	+	asmbl_28663	none	Trinity_GG_30711_c0_g1_i3,blat.proc3825176.chain_1390	2	STRG.24178.1,STRG.24178.2,blat.proc3825176.chain_1391,blat.proc3825176.chain_1393	4
scaffold_25	retained_intron	185266	185787	-	asmbl_33956	none	Trinity_GG_15147_c0_g1_i1,blat.proc3825162.chain_411	2	STRG.27051.1,Trinity_GG_15147_c0_g1_i2,blat.proc3825162.chain_412	3
scaffold_7	spliced_intron	13546262	13546404	+	asmbl_50358,asmbl_50362	none	STRG.9464.1,blat.proc3825168.chain_1995,blat.proc3825168.chain_1996	3	blat.proc3825168.chain_1994	1
scaffold_8	alt_acceptor	9903939	9903940	-	asmbl_52063,asmbl_52066	none	STRG.10243.1,Trinity_GG_5719_c0_g1_i2,blat.proc3825152.chain_2525,blat.proc3825152.chain_2527	4	STRG.10243.2,blat.proc3825152.chain_2526	2
scaffold_22	alternate_exon	1006301	1010932	+	asmbl_29913,asmbl_29915	none	STRG.24754.2,blat.proc3825176.chain_1858,blat.proc3825176.chain_1861	3	STRG.24754.1,Trinity_GG_30985_c0_g1_i3,blat.proc3825176.chain_1857	3
scaffold_19	alt_acceptor	11466823	11466824	-	asmbl_22392	none	STRG.22477.2	1	STRG.22477.1,blat.proc3825158.chain_3230	2
scaffold_15	spliced_intron	12003651	12003789	-	asmbl_14553,asmbl_14555,asmbl_14556	none	STRG.18664.1,STRG.18664.3,blat.proc3825156.chain_3536	3	STRG.18664.2,blat.proc3825156.chain_3535	2
scaffold_26	retained_exon	5658452	5658472	-	asmbl_35608,asmbl_35610,asmbl_35612	none	STRG.28272.1,STRG.28272.3,blat.proc3825162.chain_1527,blat.proc3825162.chain_1528,blat.proc3825162.chain_1532	5	STRG.28272.2,blat.proc3825162.chain_1526,blat.proc3825162.chain_1529,blat.proc3825162.chain_1530	4
scaffold_2	alternate_exon	7466326	7469821	-	asmbl_23260	none	STRG.2074.2,Trinity_GG_1141_c0_g1_i3,Trinity_GG_1141_c1_g1_i1,blat.proc3825148.chain_2057,blat.proc3825148.chain_2068	5	blat.proc3825148.chain_2062	1
scaffold_8	alternate_exon	9281203	9281327	+	asmbl_53066	none	STRG.10187.1,blat.proc3825168.chain_2742	2	STRG.10187.2,blat.proc3825168.chain_2743	2
scaffold_16	retained_intron	1236351	1236851	-	asmbl_16930	none	blat.proc3825158.chain_220	1	STRG.19083.1,blat.proc3825158.chain_218,blat.proc3825158.chain_219	3
scaffold_20	starts_in_intron	7210557	7210557	+	asmbl_26710,asmbl_26712	none	STRG.23290.3,Trinity_GG_30160_c0_g1_i3,blat.proc3825176.chain_455	3	STRG.23290.1,STRG.23290.2,Trinity_GG_30160_c0_g1_i1,blat.proc3825176.chain_453,blat.proc3825176.chain_454	5
scaffold_5	spliced_intron	5045141	5045218	+	asmbl_45329	none	STRG.5958.3	1	STRG.5958.4,blat.proc3825166.chain_2128	2
scaffold_1	starts_in_intron	13831466	13831466	+	asmbl_2319	none	STRG.995.2	1	STRG.995.1,Trinity_GG_17899_c0_g1_i1,blat.proc3825164.chain_1127	3
scaffold_15	starts_in_intron	2896785	2896785	-	asmbl_14063	none	STRG.18078.3	1	STRG.18078.2	1
scaffold_3	retained_intron	17362106	17362259	-	asmbl_39551,asmbl_39552,asmbl_39553,asmbl_39555,asmbl_39556,asmbl_39557,asmbl_39558	none	STRG.3971.3,blat.proc3825150.chain_177,blat.proc3825150.chain_179,blat.proc3825150.chain_180,blat.proc3825150.chain_182,blat.proc3825150.chain_183,blat.proc3825150.chain_184	7	STRG.3971.1,STRG.3971.2,STRG.3971.4,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_178,blat.proc3825150.chain_181,blat.proc3825150.chain_185	8
scaffold_14	retained_exon	11676860	11676921	-	asmbl_13520	none	STRG.17513.2,blat.proc3825156.chain_2347	2	STRG.17513.1,blat.proc3825156.chain_2349	2
scaffold_24	alt_acceptor	2186894	2186895	+	asmbl_32084	none	blat.proc3825176.chain_3382	1	STRG.26445.1	1
scaffold_10	alternate_exon	8902841	8902885	-	asmbl_4640	none	STRG.12634.1	1	STRG.12634.2,STRG.12634.3,blat.proc3825154.chain_1246,blat.proc3825154.chain_1247,blat.proc3825154.chain_1248,blat.proc3825178.chain_3390	6
scaffold_7	starts_in_intron	12420341	12420341	-	asmbl_51216	none	blat.proc3825152.chain_1701	1	STRG.9346.1,blat.proc3825152.chain_1704,blat.proc3825152.chain_1705	3
scaffold_6	alt_acceptor	712256	712257	+	asmbl_46673	none	STRG.7131.2	1	STRG.7131.1	1
scaffold_19	spliced_intron	30998	31076	+	asmbl_21169	none	STRG.21819.1,Trinity_GG_29379_c0_g1_i1,blat.proc3825174.chain_2862	3	Trinity_GG_29379_c0_g1_i3,blat.proc3825174.chain_2863	2
scaffold_11	retained_intron	857013	857158	+	asmbl_5311	none	blat.proc3825170.chain_1862	1	STRG.13285.1,STRG.13285.2,blat.proc3825170.chain_1860,blat.proc3825170.chain_1861,blat.proc3825170.chain_1863	5
scaffold_14	spliced_intron	11391513	11391625	-	asmbl_13476	none	STRG.17477.2,Trinity_GG_9803_c0_g1_i5,blat.proc3825156.chain_2293	3	STRG.17477.1,STRG.17477.3,STRG.17477.4,blat.proc3825156.chain_2291,blat.proc3825156.chain_2292,blat.proc3825156.chain_2295	6
scaffold_5	retained_exon	238215	238772	-	asmbl_43761	none	STRG.5593.3,STRG.5593.4,blat.proc3825150.chain_1832	3	STRG.5593.2	1
scaffold_16	ends_in_intron	9144882	9144882	+	asmbl_16462	none	blat.proc3825174.chain_434	1	STRG.19514.1,STRG.19514.2,blat.proc3825174.chain_435,blat.proc3825174.chain_436,blat.proc3825174.chain_437,blat.proc3825174.chain_438	6
scaffold_10	retained_exon	17684425	17684546	+	asmbl_3788	none	STRG.13220.1	1	STRG.13220.2	1
scaffold_5	ends_in_intron	9075427	9075427	+	asmbl_45597	none	blat.proc3825166.chain_2464	1	STRG.6245.1,STRG.6245.2,blat.proc3825166.chain_2461,blat.proc3825166.chain_2462,blat.proc3825166.chain_2463	5
scaffold_16	retained_intron	6206176	6206400	-	asmbl_17151	none	blat.proc3825158.chain_534,blat.proc3825158.chain_536	2	STRG.19373.1,blat.proc3825158.chain_535	2
scaffold_16	starts_in_intron	4020860	4020860	-	asmbl_17035	none	blat.proc3825158.chain_276	1	STRG.19218.1,blat.proc3825158.chain_277	2
scaffold_9	alt_donor	3676021	3676022	-	asmbl_54920	none	STRG.10993.4,Trinity_GG_6077_c0_g4_i1,blat.proc3825152.chain_3221	3	STRG.10993.1,STRG.10993.5,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3212,blat.proc3825152.chain_3215	6
scaffold_4	starts_in_intron	6283401	6283401	-	asmbl_42675	none	blat.proc3825150.chain_773	1	STRG.4498.3,Trinity_GG_2543_c0_g1_i1,blat.proc3825150.chain_779	3
scaffold_26	retained_intron	9083212	9083394	-	asmbl_35763,asmbl_35766	none	STRG.28473.4,blat.proc3825162.chain_1684	2	STRG.28473.1,STRG.28473.2,STRG.28473.3,blat.proc3825162.chain_1681,blat.proc3825162.chain_1682	5
scaffold_7	ends_in_intron	9920959	9920959	-	asmbl_51102	none	Trinity_GG_5187_c0_g1_i3,blat.proc3825152.chain_1567	2	STRG.9202.1,blat.proc3825152.chain_1568	2
scaffold_26	ends_in_intron	424661	424661	+	asmbl_34685	none	STRG.27868.2	1	STRG.27868.1,blat.proc3825178.chain_941,blat.proc3825178.chain_942,blat.proc3825178.chain_943	4
scaffold_1	spliced_intron	6323837	6323948	+	asmbl_1827,asmbl_1828	none	STRG.430.1,blat.proc3825164.chain_576,blat.proc3825164.chain_577	3	blat.proc3825164.chain_578	1
scaffold_3	alternate_exon	6032281	6050043	-	asmbl_38881,asmbl_38882,asmbl_38883	none	STRG.3259.4,STRG.3259.6,STRG.3259.7	3	STRG.3259.2,blat.proc3825148.chain_3152	2
scaffold_23	retained_intron	7044875	7045050	-	asmbl_31013	none	Trinity_GG_14529_c0_g1_i2,blat.proc3825160.chain_3125	2	STRG.26031.1,blat.proc3825160.chain_3124	2
scaffold_7	alternate_exon	4925486	4930790	+	asmbl_49772,asmbl_49774,asmbl_49775,asmbl_49776,asmbl_49777,asmbl_49778	none	STRG.8852.1,STRG.8852.3,blat.proc3825168.chain_1344,blat.proc3825168.chain_1345,blat.proc3825168.chain_1346,blat.proc3825168.chain_1348,blat.proc3825168.chain_1352	7	blat.proc3825168.chain_1351	1
scaffold_19	alt_donor	12107237	12107238	-	asmbl_22455	none	STRG.22539.2,blat.proc3825158.chain_3188	2	STRG.22539.4	1
scaffold_13	alternate_exon	11381832	11382356	-	asmbl_10082	none	STRG.16301.2,blat.proc3825156.chain_1172	2	STRG.16301.5	1
scaffold_4	ends_in_intron	8079189	8079189	-	asmbl_42735	none	blat.proc3825150.chain_860	1	STRG.4622.1,blat.proc3825150.chain_859	2
scaffold_11	spliced_intron	11640396	11641468	+	asmbl_5982	none	STRG.14090.2	1	blat.proc3825170.chain_2635,blat.proc3825170.chain_2636,blat.proc3825170.chain_2637,blat.proc3825170.chain_2640	4
scaffold_13	retained_exon	518334	519848	+	asmbl_10488,asmbl_10490	none	STRG.15449.4,blat.proc3825172.chain_183	2	STRG.15449.3,Trinity_GG_25810_c0_g1_i15,blat.proc3825172.chain_185	3
scaffold_13	spliced_intron	9957806	9957985	+	asmbl_11218	none	STRG.16237.1	1	STRG.16237.2,blat.proc3825172.chain_972	2
scaffold_4	alternate_exon	3265921	3266104	-	asmbl_42433	none	Trinity_GG_2388_c1_g1_i3,blat.proc3825150.chain_516	2	blat.proc3825150.chain_514	1
scaffold_18	retained_intron	7686792	7686884	+	asmbl_20774,asmbl_20775,asmbl_20776,asmbl_20782,asmbl_20784	none	STRG.21474.3,STRG.21474.5,Trinity_GG_29179_c0_g1_i14,blat.proc3825174.chain_2511,blat.proc3825174.chain_2512,blat.proc3825174.chain_2516,blat.proc3825174.chain_2518	7	STRG.21474.2,blat.proc3825174.chain_2519	2
scaffold_500	spliced_intron	2522	2857	+	asmbl_46490	none	STRG.30357.6	1	STRG.30357.1,STRG.30357.4,Trinity_GG_34112_c1_g1_i8,blat.proc3825178.chain_3445,blat.proc3825178.chain_3446	5
scaffold_1	spliced_intron	103635	103805	+	asmbl_1395,asmbl_1396,asmbl_1397,asmbl_1399	none	STRG.12.1,Trinity_GG_17334_c0_g1_i2,blat.proc3825164.chain_105,blat.proc3825164.chain_106,blat.proc3825164.chain_107,blat.proc3825164.chain_109	6	blat.proc3825164.chain_108	1
scaffold_11	skipped_exon	8079062	8079347	-	asmbl_6826,asmbl_6830,asmbl_6835	none	STRG.13815.2,STRG.13815.4,Trinity_GG_7709_c0_g1_i1,Trinity_GG_7709_c0_g1_i3,blat.proc3825154.chain_2326,blat.proc3825154.chain_2333	6	STRG.13815.1,STRG.13815.3,STRG.13815.5,Trinity_GG_7709_c0_g1_i4,Trinity_GG_7709_c0_g1_i8,Trinity_GG_7709_c0_g1_i9,blat.proc3825154.chain_2328,blat.proc3825154.chain_2330,blat.proc3825154.chain_2332	9
scaffold_28	starts_in_intron	4206867	4206867	+	asmbl_37523	none	Trinity_GG_33739_c0_g1_i5,blat.proc3825178.chain_2812	2	STRG.29616.1,STRG.29616.4,STRG.29616.5,blat.proc3825178.chain_2815	4
scaffold_3	starts_in_intron	17530821	17530821	+	asmbl_40687	none	Trinity_GG_19523_c0_g1_i2,blat.proc3825166.chain_443	2	STRG.3984.1,STRG.3984.2,blat.proc3825166.chain_442	3
scaffold_19	alt_donor	9556127	9556128	-	asmbl_22343	none	STRG.22391.2,blat.proc3825158.chain_3110	2	STRG.22391.1,blat.proc3825158.chain_3111	2
scaffold_2	spliced_intron	10655085	10655168	+	asmbl_24712,asmbl_24713	none	STRG.2225.1,blat.proc3825164.chain_2399,blat.proc3825164.chain_2400	3	STRG.2225.2	1
scaffold_3	spliced_intron	1531004	1531031	-	asmbl_38714	none	STRG.2979.2	1	STRG.2979.1,Trinity_GG_1580_c0_g1_i1,blat.proc3825148.chain_2808	3
scaffold_27	alt_acceptor	4939549	4939550	+	asmbl_36325,asmbl_36326,asmbl_36327,asmbl_36328	none	STRG.28932.2,STRG.28932.4,blat.proc3825178.chain_2145,blat.proc3825178.chain_2146,blat.proc3825178.chain_2147	5	STRG.28932.1,STRG.28932.3	2
scaffold_12	spliced_intron	9152051	9152228	+	asmbl_7855	none	STRG.14923.1,blat.proc3825170.chain_3450,blat.proc3825170.chain_3451	3	blat.proc3825170.chain_3449	1
scaffold_6	alt_acceptor	19111170	19111171	+	asmbl_47878	none	STRG.8584.3	1	STRG.8584.1,STRG.8584.2,Trinity_GG_22000_c0_g1_i2,Trinity_GG_22000_c0_g1_i3,blat.proc3825168.chain_988,blat.proc3825168.chain_989	6
scaffold_2	skipped_exon	9140005	9140289	-	asmbl_23354,asmbl_23355	none	STRG.2159.1,STRG.2159.2	2	blat.proc3825148.chain_2180,blat.proc3825148.chain_2181	2
scaffold_5	skipped_exon	15703621	15706084	+	asmbl_46009,asmbl_46012	none	STRG.6765.1,blat.proc3825166.chain_2903,blat.proc3825166.chain_2904	3	STRG.6765.2	1
scaffold_6	retained_intron	12653940	12654092	+	asmbl_47430,asmbl_47431	none	STRG.8027.2,Trinity_GG_21691_c1_g1_i4,blat.proc3825168.chain_447	3	blat.proc3825168.chain_448	1
scaffold_17	alternate_exon	1289779	1292951	-	asmbl_17679,asmbl_17680,asmbl_17682	none	STRG.19964.1,STRG.19964.4,blat.proc3825158.chain_970,blat.proc3825158.chain_973,blat.proc3825158.chain_975	5	STRG.19964.3	1
scaffold_11	alternate_exon	11099882	11104018	-	asmbl_7018	none	STRG.14077.1	1	STRG.14077.2	1
scaffold_14	alternate_exon	12825004	12825328	-	asmbl_13619	none	STRG.17598.5	1	STRG.17598.1,STRG.17598.2,STRG.17598.4,Trinity_GG_9905_c0_g1_i1,Trinity_GG_9905_c0_g1_i6,blat.proc3825156.chain_2458,blat.proc3825156.chain_2459,blat.proc3825156.chain_2461,blat.proc3825156.chain_2462,blat.proc3825156.chain_2464	10
scaffold_15	spliced_intron	10633902	10633978	+	asmbl_15460	none	STRG.18550.2	1	STRG.18550.1,STRG.18550.3,blat.proc3825172.chain_3203,blat.proc3825172.chain_3204	4
scaffold_16	ends_in_intron	7228663	7228663	-	asmbl_17175	none	STRG.19399.4	1	STRG.19399.2,STRG.19399.3	2
scaffold_12	spliced_intron	4290876	4291432	-	asmbl_8385	none	STRG.14604.1,blat.proc3825154.chain_3072	2	blat.proc3825154.chain_3073	1
scaffold_13	spliced_intron	4803	5026	+	asmbl_10452	none	Trinity_GG_25787_c0_g1_i4,blat.proc3825172.chain_139	2	STRG.15424.1,STRG.15424.2,STRG.15424.3,Trinity_GG_25787_c0_g1_i1,Trinity_GG_25787_c0_g1_i2,Trinity_GG_25787_c0_g1_i6,Trinity_GG_25787_c0_g1_i7,Trinity_GG_25787_c0_g1_i8,blat.proc3825172.chain_134,blat.proc3825172.chain_135,blat.proc3825172.chain_137,blat.proc3825172.chain_138,blat.proc3825172.chain_141	13
scaffold_18	alternate_exon	2004770	2006641	-	asmbl_19687	none	STRG.21105.2	1	STRG.21105.1,blat.proc3825158.chain_2090	2
scaffold_25	skipped_exon	7803095	7803570	-	asmbl_34407	none	blat.proc3825162.chain_946	1	STRG.27602.1,blat.proc3825162.chain_947,blat.proc3825162.chain_948	3
scaffold_3	spliced_intron	935722	935829	-	asmbl_38684,asmbl_38685	none	blat.proc3825148.chain_2837,blat.proc3825148.chain_2838	2	blat.proc3825148.chain_2836	1
scaffold_6	alt_acceptor	878679	878680	+	asmbl_46683	none	STRG.7158.3	1	STRG.7158.1	1
scaffold_15	retained_exon	7793233	7793349	+	asmbl_15298	none	STRG.18354.2,blat.proc3825172.chain_3027,blat.proc3825172.chain_3028	3	STRG.18354.1,blat.proc3825172.chain_3026	2
scaffold_8	skipped_exon	2438124	2439404	-	asmbl_51711	none	STRG.9794.3,blat.proc3825152.chain_2057	2	STRG.9794.2,blat.proc3825152.chain_2056	2
scaffold_8	starts_in_intron	10872557	10872557	+	asmbl_53184	none	Trinity_GG_23033_c0_g1_i2,blat.proc3825168.chain_2849	2	STRG.10309.1,blat.proc3825168.chain_2850	2
scaffold_13	starts_in_intron	11540405	11540405	+	asmbl_11271	none	Trinity_GG_26235_c0_g1_i7,blat.proc3825172.chain_1025	2	STRG.16304.1,blat.proc3825172.chain_1022,blat.proc3825172.chain_1027	3
scaffold_8	starts_in_intron	5065	5065	+	asmbl_52643	none	Trinity_GG_22688_c0_g1_i1,blat.proc3825168.chain_2219	2	STRG.9704.1,blat.proc3825168.chain_2218	2
scaffold_20	retained_exon	1616257	1616761	-	asmbl_25590	none	STRG.22893.3	1	STRG.22893.1	1
scaffold_18	alt_donor	4633007	4633008	-	asmbl_19815	none	blat.proc3825158.chain_2136	1	STRG.21251.1,blat.proc3825158.chain_2135	2
scaffold_10	retained_intron	556785	556911	-	asmbl_3968,asmbl_3969	none	STRG.11937.2,blat.proc3825154.chain_398	2	STRG.11937.1,Trinity_GG_6599_c0_g1_i2,blat.proc3825154.chain_399	3
scaffold_2	spliced_intron	17445635	17445797	-	asmbl_23725	none	STRG.2628.1	1	STRG.2628.2,Trinity_GG_1443_c0_g1_i2	2
scaffold_16	starts_in_intron	7704350	7704350	-	asmbl_17191,asmbl_17192	none	STRG.19419.2,blat.proc3825158.chain_547	2	STRG.19419.1,blat.proc3825158.chain_548	2
scaffold_9	starts_in_intron	3671221	3671221	-	asmbl_54922	none	blat.proc3825152.chain_3224	1	STRG.10993.1,STRG.10993.2,STRG.10993.4,STRG.10993.5,blat.proc3825152.chain_3210,blat.proc3825152.chain_3211,blat.proc3825152.chain_3215	7
scaffold_15	retained_intron	2990755	2990835	-	asmbl_14070	none	STRG.18083.3,blat.proc3825156.chain_2908	2	STRG.18083.2,blat.proc3825156.chain_2907	2
scaffold_13	starts_in_intron	14156955	14156955	+	asmbl_11426	none	blat.proc3825172.chain_1276	1	STRG.16461.1,blat.proc3825172.chain_1277,blat.proc3825172.chain_1278	3
scaffold_15	spliced_intron	15355271	15355388	+	asmbl_15755	none	STRG.18922.2,blat.proc3825172.chain_3562	2	STRG.18922.1,STRG.18922.3,Trinity_GG_27686_c0_g1_i4,Trinity_GG_27686_c0_g1_i7,Trinity_GG_27686_c0_g1_i9,blat.proc3825172.chain_3560,blat.proc3825172.chain_3561,blat.proc3825172.chain_3564,blat.proc3825172.chain_3565,blat.proc3825172.chain_3566	10
scaffold_19	retained_intron	12574951	12575303	-	asmbl_22519	none	blat.proc3825158.chain_3374	1	STRG.22584.3	1
scaffold_14	spliced_intron	405059	405204	+	asmbl_11748,asmbl_11749,asmbl_11751	none	STRG.16734.2,STRG.16734.5,STRG.16734.6,Trinity_GG_26526_c0_g1_i6,blat.proc3825172.chain_1502,blat.proc3825172.chain_1513,blat.proc3825172.chain_1516	7	STRG.16734.1,Trinity_GG_26526_c0_g1_i5,blat.proc3825172.chain_1510	3
scaffold_1	alt_donor	13889852	13889853	+	asmbl_2320,asmbl_2321,asmbl_2322,asmbl_2324,asmbl_2325,asmbl_2327	none	STRG.997.1,STRG.997.3,STRG.997.4,blat.proc3825164.chain_1165,blat.proc3825164.chain_1166,blat.proc3825164.chain_1167,blat.proc3825164.chain_1168,blat.proc3825164.chain_1169,blat.proc3825164.chain_1170	9	STRG.997.2	1
scaffold_1	retained_intron	11396225	11396399	+	asmbl_2094,asmbl_2097	none	STRG.748.2,blat.proc3825164.chain_917	2	STRG.748.1,blat.proc3825164.chain_919	2
scaffold_1	skipped_exon	19042448	19044609	+	asmbl_2578,asmbl_2579	none	STRG.1335.1,Trinity_GG_18101_c0_g1_i2	2	STRG.1335.5	1
scaffold_1	starts_in_intron	4240100	4240100	+	asmbl_1651	none	Trinity_GG_17506_c2_g1_i1,blat.proc3825164.chain_406	2	STRG.256.1,STRG.256.2,STRG.256.3,STRG.256.4,STRG.256.5,blat.proc3825164.chain_401,blat.proc3825164.chain_402,blat.proc3825164.chain_403,blat.proc3825164.chain_404	9
scaffold_4	retained_intron	4423769	4423970	-	asmbl_42513,asmbl_42515	none	STRG.4343.2,blat.proc3825150.chain_580	2	STRG.4343.1,STRG.4343.3,blat.proc3825150.chain_581	3
scaffold_11	skipped_exon	8600562	8601790	+	asmbl_5813	none	STRG.13876.3	1	STRG.13876.1,Trinity_GG_24974_c0_g1_i2,Trinity_GG_24974_c0_g1_i6,blat.proc3825170.chain_2446,blat.proc3825170.chain_2447,blat.proc3825170.chain_2449	6
scaffold_1	alternate_exon	16485490	16485565	-	asmbl_995	none	blat.proc3825148.chain_1098	1	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1101,blat.proc3825148.chain_1102	5
scaffold_1	starts_in_intron	11132782	11132782	-	asmbl_610	none	blat.proc3825148.chain_668	1	STRG.734.1,blat.proc3825148.chain_666	2
scaffold_4	retained_exon	16872468	16872569	-	asmbl_43228	none	STRG.5273.2	1	STRG.5273.1,blat.proc3825150.chain_1391,blat.proc3825150.chain_1392	3
scaffold_22	starts_in_intron	6841488	6841488	-	asmbl_29337	none	blat.proc3825160.chain_2171	1	blat.proc3825160.chain_2175	1
scaffold_1	ends_in_intron	4574867	4574867	-	asmbl_199	none	Trinity_GG_95_c2_g1_i1,blat.proc3825148.chain_162	2	STRG.285.1,blat.proc3825148.chain_155,blat.proc3825148.chain_159,blat.proc3825148.chain_160	4
scaffold_52	alt_acceptor	14423	14424	+	asmbl_46532,asmbl_46533	none	STRG.30061.1,STRG.30061.2,blat.proc3825178.chain_3186,blat.proc3825178.chain_3187	4	STRG.30061.3,blat.proc3825178.chain_3185,blat.proc3825178.chain_3188	3
scaffold_3	retained_exon	13424514	13425197	-	asmbl_39264	none	STRG.3693.4	1	STRG.3693.2,blat.proc3825148.chain_3583	2
scaffold_1	ends_in_intron	12934875	12934875	-	asmbl_780	none	STRG.929.3,Trinity_GG_473_c1_g1_i1,blat.proc3825148.chain_893	3	STRG.929.1,STRG.929.2,Trinity_GG_473_c0_g1_i1,blat.proc3825148.chain_892	4
scaffold_16	alt_donor	9338088	9338089	-	asmbl_17273	none	STRG.19538.1,Trinity_GG_10898_c1_g1_i2,blat.proc3825158.chain_554	3	STRG.19538.2,Trinity_GG_10898_c1_g1_i1,blat.proc3825158.chain_555	3
scaffold_6	skipped_exon	12900264	12901388	+	asmbl_47443	none	STRG.8048.2	1	STRG.8048.1,STRG.8048.3,blat.proc3825168.chain_459	3
scaffold_13	ends_in_intron	13536441	13536441	-	asmbl_10148	none	Trinity_GG_9145_c1_g1_i1,blat.proc3825156.chain_1188	2	STRG.16406.2	1
scaffold_6	spliced_intron	15944850	15945070	+	asmbl_47681	none	STRG.8324.2	1	STRG.8324.1	1
scaffold_22	spliced_intron	4225894	4226332	-	asmbl_29213,asmbl_29214,asmbl_29218,asmbl_29226	none	STRG.24845.2,STRG.24845.3,blat.proc3825160.chain_2074,blat.proc3825160.chain_2076,blat.proc3825160.chain_2079	5	STRG.24845.1,blat.proc3825160.chain_2069,blat.proc3825160.chain_2070,blat.proc3825160.chain_2071,blat.proc3825160.chain_2075,blat.proc3825160.chain_2078	6
scaffold_17	alt_donor	1294595	1294596	-	asmbl_17689	none	STRG.19965.2,blat.proc3825158.chain_999	2	STRG.19965.1,Trinity_GG_11194_c0_g1_i1,blat.proc3825158.chain_1000	3
scaffold_27	alt_donor	9329763	9329764	-	asmbl_37130,asmbl_37132	none	STRG.29184.1,blat.proc3825162.chain_2361,blat.proc3825162.chain_2362	3	STRG.29184.2,blat.proc3825162.chain_2363	2
scaffold_13	alt_acceptor	11379416	11379417	-	asmbl_10082,asmbl_10084,asmbl_10086,asmbl_10089,asmbl_10090	none	STRG.16301.1,STRG.16301.2,STRG.16301.3,STRG.16301.5,blat.proc3825156.chain_1170,blat.proc3825156.chain_1172,blat.proc3825156.chain_1173,blat.proc3825156.chain_1174	8	STRG.16301.4,blat.proc3825156.chain_1169	2
scaffold_5	alt_donor	13317001	13317002	-	asmbl_44539,asmbl_44540,asmbl_44542	none	blat.proc3825150.chain_2763,blat.proc3825150.chain_2764,blat.proc3825150.chain_2766	3	STRG.6579.1	1
scaffold_11	starts_in_intron	11067855	11067855	+	asmbl_5957	none	Trinity_GG_25069_c0_g1_i1,blat.proc3825170.chain_2615	2	STRG.14072.1,Trinity_GG_25069_c0_g1_i3,blat.proc3825170.chain_2616	3
scaffold_5	alternate_exon	13803445	13815855	-	asmbl_44561,asmbl_44564	none	STRG.6602.1,blat.proc3825150.chain_2813,blat.proc3825150.chain_2814	3	blat.proc3825150.chain_2811	1
scaffold_17	alternate_exon	7620815	7621014	+	asmbl_18913	none	STRG.20398.2	1	STRG.20398.1	1
scaffold_19	ends_in_intron	3517343	3517343	+	asmbl_21322	none	Trinity_GG_29502_c0_g1_i1	1	STRG.22039.1	1
scaffold_3	alt_acceptor	18141544	18141545	-	asmbl_39595	none	STRG.4029.1	1	STRG.4029.2,STRG.4029.3,blat.proc3825150.chain_207,blat.proc3825150.chain_208	4
scaffold_10	alt_acceptor	1621496	1621497	+	asmbl_2951	none	STRG.12026.3,Trinity_GG_23966_c0_g1_i4,blat.proc3825170.chain_713	3	STRG.12026.1,STRG.12026.2,STRG.12026.4,STRG.12026.5,STRG.12026.6,Trinity_GG_23966_c0_g1_i3,Trinity_GG_23966_c0_g1_i7,Trinity_GG_23966_c0_g1_i8,Trinity_GG_23966_c0_g1_i9,blat.proc3825170.chain_714,blat.proc3825170.chain_715,blat.proc3825170.chain_716,blat.proc3825170.chain_717	13
scaffold_14	ends_in_intron	209431	209431	-	asmbl_12798	none	Trinity_GG_9359_c0_g1_i1,blat.proc3825156.chain_1535	2	STRG.16713.1,Trinity_GG_9359_c0_g2_i2,Trinity_GG_9359_c0_g2_i3,blat.proc3825156.chain_1536,blat.proc3825156.chain_1537	5
scaffold_15	alt_acceptor	1696482	1696483	+	asmbl_15028	none	STRG.17978.1,blat.proc3825172.chain_2690	2	STRG.17978.2	1
scaffold_20	spliced_intron	1080419	1081286	-	asmbl_25528	none	STRG.22815.1,blat.proc3825158.chain_3678	2	STRG.22815.2,Trinity_GG_12736_c0_g1_i2,Trinity_GG_12736_c1_g1_i1,blat.proc3825158.chain_3679,blat.proc3825158.chain_3680	5
scaffold_18	retained_intron	1862675	1862768	-	asmbl_19650,asmbl_19651	none	STRG.21074.1,blat.proc3825158.chain_1999	2	STRG.21074.2,STRG.21074.3,blat.proc3825158.chain_1998	3
scaffold_25	alt_donor	4442011	4442012	+	asmbl_33496,asmbl_33499	none	STRG.27374.3,STRG.27374.4,Trinity_GG_32407_c0_g1_i2,blat.proc3825178.chain_482	4	STRG.27374.2	1
scaffold_22	alt_donor	6155300	6155301	-	asmbl_29310,asmbl_29313	none	STRG.24977.1,blat.proc3825160.chain_2105,blat.proc3825160.chain_2106	3	STRG.24977.2,STRG.24977.3,blat.proc3825160.chain_2107	3
scaffold_13	alternate_exon	5185400	5187235	-	asmbl_9677	none	STRG.15819.1,blat.proc3825156.chain_684,blat.proc3825156.chain_688	3	STRG.15819.2,blat.proc3825156.chain_687	2
scaffold_21	starts_in_intron	3113588	3113588	-	asmbl_27509	none	blat.proc3825160.chain_1064	1	STRG.23940.1,blat.proc3825160.chain_1061,blat.proc3825160.chain_1062	3
scaffold_9	starts_in_intron	4206117	4206117	+	asmbl_53945	none	blat.proc3825168.chain_3486	1	STRG.11024.3,STRG.11024.4,blat.proc3825168.chain_3484	3
scaffold_13	retained_exon	9180704	9180801	-	asmbl_10006	none	STRG.16177.1,blat.proc3825156.chain_1084	2	STRG.16177.2,blat.proc3825156.chain_1086	2
scaffold_3	spliced_intron	7919332	7919535	-	asmbl_38997,asmbl_38998,asmbl_38999,asmbl_39000,asmbl_39002	none	STRG.3377.1,STRG.3377.2,STRG.3377.3,STRG.3377.4,blat.proc3825148.chain_3255	5	blat.proc3825148.chain_3254	1
scaffold_1	starts_in_intron	12339195	12339195	-	asmbl_702,asmbl_716	none	blat.proc3825148.chain_827,blat.proc3825148.chain_842	2	STRG.849.1,STRG.849.2,STRG.849.3,blat.proc3825148.chain_825,blat.proc3825148.chain_826,blat.proc3825148.chain_828,blat.proc3825148.chain_831,blat.proc3825148.chain_833,blat.proc3825148.chain_834,blat.proc3825148.chain_835,blat.proc3825148.chain_838,blat.proc3825148.chain_839,blat.proc3825148.chain_840,blat.proc3825148.chain_841	14
scaffold_1	alt_acceptor	2789628	2789629	+	asmbl_1554,asmbl_1557	none	STRG.181.2,blat.proc3825164.chain_236	2	STRG.181.1,blat.proc3825164.chain_237	2
scaffold_12	spliced_intron	5140448	5141695	-	asmbl_8489	none	STRG.14687.2,blat.proc3825154.chain_3224	2	STRG.14687.1,Trinity_GG_8205_c0_g1_i1,blat.proc3825154.chain_3221,blat.proc3825154.chain_3223	4
scaffold_1	retained_intron	16478498	16478746	-	asmbl_997	none	blat.proc3825148.chain_1099	1	STRG.1159.1,STRG.1159.2,blat.proc3825148.chain_1096,blat.proc3825148.chain_1097,blat.proc3825148.chain_1098,blat.proc3825148.chain_1100,blat.proc3825148.chain_1102,blat.proc3825148.chain_1104	8
scaffold_15	retained_exon	14633945	14634042	-	asmbl_14733	none	STRG.18877.2,blat.proc3825156.chain_3749	2	STRG.18877.3,STRG.18877.4,blat.proc3825156.chain_3748	3
scaffold_26	alt_acceptor	3561642	3561643	+	asmbl_34791,asmbl_34792,asmbl_34794	none	STRG.28036.1,STRG.28036.2,STRG.28036.4	3	STRG.28036.3	1
scaffold_8	retained_intron	1207989	1208036	-	asmbl_51700	none	STRG.9750.2	1	STRG.9750.1	1
scaffold_18	starts_in_intron	199705	199705	+	asmbl_20276	none	STRG.20974.3	1	STRG.20974.1,STRG.20974.2,blat.proc3825174.chain_1920,blat.proc3825174.chain_1921	4
scaffold_14	alternate_exon	11755888	11756695	+	asmbl_12402	none	STRG.17519.2,blat.proc3825172.chain_2162	2	STRG.17519.1,blat.proc3825172.chain_2164	2
scaffold_6	spliced_intron	3564649	3564671	-	asmbl_48271	none	STRG.7366.2	1	STRG.7366.1,Trinity_GG_4125_c0_g1_i1	2
scaffold_7	alt_acceptor	1235446	1235447	+	asmbl_49588,asmbl_49589,asmbl_49590,asmbl_49594,asmbl_49600,asmbl_49602,asmbl_49604,asmbl_49605,asmbl_49606,asmbl_49607	none	STRG.8637.1,STRG.8637.2,STRG.8637.5,STRG.8637.6,STRG.8637.7,Trinity_GG_22033_c0_g1_i1,Trinity_GG_22033_c0_g1_i5,Trinity_GG_22033_c0_g1_i7,Trinity_GG_22033_c0_g1_i8,blat.proc3825168.chain_1074,blat.proc3825168.chain_1076,blat.proc3825168.chain_1079	12	STRG.8637.4	1
scaffold_23	alternate_exon	4229664	4232310	-	asmbl_30848,asmbl_30852	none	STRG.25839.3,blat.proc3825160.chain_2986,blat.proc3825160.chain_2988	3	STRG.25839.1,STRG.25839.5,blat.proc3825160.chain_2987,blat.proc3825160.chain_2989	4
scaffold_28	starts_in_intron	2928331	2928331	+	asmbl_37426	none	blat.proc3825178.chain_2624	1	STRG.29488.1,Trinity_GG_33635_c0_g1_i1,blat.proc3825178.chain_2625	3
scaffold_11	alt_donor	3697980	3697981	+	asmbl_5457	none	STRG.13489.2	1	STRG.13489.1,blat.proc3825170.chain_1994	2
scaffold_11	alternate_exon	15833132	15833670	+	asmbl_6133	none	STRG.14321.2,Trinity_GG_25173_c2_g1_i1,blat.proc3825170.chain_2798,blat.proc3825170.chain_2803	4	STRG.14321.3	1
scaffold_17	retained_intron	1292002	1292412	-	asmbl_17682,asmbl_17687	none	STRG.19964.6,blat.proc3825158.chain_970	2	STRG.19964.1,blat.proc3825158.chain_973	2
scaffold_24	starts_in_intron	10596013	10596013	-	asmbl_33210	none	Trinity_GG_15116_c1_g1_i1	1	STRG.27020.1,blat.proc3825162.chain_360,blat.proc3825162.chain_362	3
scaffold_7	retained_intron	9312119	9312215	+	asmbl_50077	none	Trinity_GG_22395_c0_g1_i1,blat.proc3825168.chain_1672	2	STRG.9144.1,Trinity_GG_22395_c0_g1_i2,Trinity_GG_22395_c0_g1_i3,Trinity_GG_22395_c0_g1_i4,blat.proc3825168.chain_1669,blat.proc3825168.chain_1670,blat.proc3825168.chain_1671	7
scaffold_8	alt_donor	11612948	11612949	+	asmbl_53250	none	STRG.10359.2	1	STRG.10359.1,blat.proc3825168.chain_2944	2
scaffold_21	starts_in_intron	57194	57194	-	asmbl_27274	none	blat.proc3825160.chain_831	1	STRG.23720.1,STRG.23720.2,STRG.23720.3,blat.proc3825160.chain_828,blat.proc3825160.chain_829,blat.proc3825160.chain_830	6
scaffold_21	starts_in_intron	7495994	7495994	-	asmbl_27827	none	blat.proc3825160.chain_1414	1	STRG.24281.1,STRG.24281.2,blat.proc3825160.chain_1415	3
scaffold_4	alt_acceptor	12341917	12341918	-	asmbl_42899	none	STRG.4868.2,blat.proc3825150.chain_1054	2	STRG.4868.1,blat.proc3825150.chain_1056	2
scaffold_20	alt_donor	11566982	11566983	+	asmbl_27075	none	STRG.23663.2	1	STRG.23663.1,blat.proc3825176.chain_868,blat.proc3825176.chain_869	3
scaffold_1	alt_donor	11269947	11269948	+	asmbl_2091	none	STRG.746.1,Trinity_GG_17778_c0_g1_i1,blat.proc3825164.chain_886	3	STRG.746.2	1
scaffold_1	alternate_exon	18742141	18742207	-	asmbl_1127	none	STRG.1306.3,blat.proc3825148.chain_1306	2	STRG.1306.2	1
scaffold_2	alt_acceptor	20309979	20309980	+	asmbl_25320	none	STRG.2876.3	1	STRG.2876.1,blat.proc3825164.chain_3119	2
scaffold_15	ends_in_intron	10648281	10648281	-	asmbl_14442	none	Trinity_GG_10428_c0_g1_i10,blat.proc3825156.chain_3418	2	STRG.18558.1,STRG.18558.2,STRG.18558.3,blat.proc3825156.chain_3414,blat.proc3825156.chain_3420	5
scaffold_5	spliced_intron	15513154	15513296	-	asmbl_44683,asmbl_44684	none	STRG.6745.1,STRG.6745.2,blat.proc3825150.chain_2945	3	blat.proc3825150.chain_2947	1
scaffold_1	retained_exon	15279892	15280037	+	asmbl_2437	none	STRG.1094.1	1	STRG.1094.2	1
scaffold_19	skipped_exon	13211934	13213021	-	asmbl_22619	none	blat.proc3825158.chain_3430	1	STRG.22653.1,blat.proc3825158.chain_3428,blat.proc3825158.chain_3432,blat.proc3825158.chain_3433,blat.proc3825158.chain_3434,blat.proc3825158.chain_3436	6
scaffold_25	ends_in_intron	4875869	4875869	+	asmbl_33541	none	Trinity_GG_32416_c0_g1_i1,blat.proc3825178.chain_498	2	STRG.27423.1,STRG.27423.2,Trinity_GG_32416_c0_g2_i3,blat.proc3825178.chain_501	4
scaffold_4	alt_acceptor	4173432	4173433	-	asmbl_42504	none	STRG.4334.1,blat.proc3825150.chain_578	2	STRG.4334.2	1
scaffold_17	retained_exon	2740686	2740806	-	asmbl_17780	none	STRG.20077.1,blat.proc3825158.chain_1133	2	STRG.20077.2,blat.proc3825158.chain_1131	2
scaffold_7	spliced_intron	2490307	2490760	+	asmbl_49650	none	blat.proc3825168.chain_1196	1	STRG.8684.1,STRG.8684.2,Trinity_GG_22100_c0_g1_i3,Trinity_GG_22100_c0_g1_i6,blat.proc3825168.chain_1192	5
scaffold_20	retained_intron	8129531	8130806	+	asmbl_26745	none	STRG.23358.1,Trinity_GG_30170_c0_g1_i1,Trinity_GG_30170_c0_g1_i3,Trinity_GG_30170_c1_g1_i1,blat.proc3825176.chain_471,blat.proc3825176.chain_472,blat.proc3825176.chain_474	7	blat.proc3825176.chain_473	1
scaffold_20	starts_in_intron	10453446	10453446	-	asmbl_26100	none	blat.proc3825160.chain_599	1	STRG.23588.1,Trinity_GG_13117_c0_g1_i1,blat.proc3825160.chain_598	3
scaffold_13	alt_acceptor	7192850	7192851	-	asmbl_9865	none	STRG.16016.5	1	STRG.16016.1,STRG.16016.2,STRG.16016.3,blat.proc3825156.chain_957,blat.proc3825156.chain_958,blat.proc3825156.chain_960,blat.proc3825156.chain_961	7
scaffold_10	alternate_exon	17009604	17011574	+	asmbl_3737	none	Trinity_GG_24546_c0_g1_i2,blat.proc3825170.chain_1721	2	STRG.13161.2,STRG.13161.3	2
scaffold_3	alternate_exon	13987047	13987250	-	asmbl_39318	none	STRG.3742.2,blat.proc3825148.chain_3650	2	blat.proc3825148.chain_3651	1
scaffold_12	spliced_intron	14988995	14989423	-	asmbl_9024,asmbl_9025,asmbl_9026	none	STRG.15298.1,STRG.15298.2,STRG.15298.3,Trinity_GG_8566_c0_g1_i1,Trinity_GG_8566_c0_g1_i2,Trinity_GG_8566_c0_g1_i4,blat.proc3825156.chain_116,blat.proc3825156.chain_118,blat.proc3825156.chain_119	9	Trinity_GG_8566_c0_g1_i6,blat.proc3825156.chain_115	2
scaffold_7	starts_in_intron	2736449	2736449	+	asmbl_49665	none	blat.proc3825168.chain_1140	1	STRG.8703.1,blat.proc3825168.chain_1139,blat.proc3825168.chain_1141	3
scaffold_6	skipped_exon	4997185	4999978	+	asmbl_46904	none	STRG.7473.1,blat.proc3825166.chain_3581	2	blat.proc3825166.chain_3582	1
scaffold_6	alt_acceptor	9138716	9138717	+	asmbl_47214,asmbl_47222	none	blat.proc3825168.chain_213,blat.proc3825168.chain_216	2	STRG.7790.1,STRG.7790.2,STRG.7790.3,STRG.7790.4,STRG.7790.5,blat.proc3825168.chain_210,blat.proc3825168.chain_211,blat.proc3825168.chain_212,blat.proc3825168.chain_214,blat.proc3825168.chain_217,blat.proc3825168.chain_218,blat.proc3825168.chain_219	12
scaffold_14	spliced_intron	3240126	3240355	+	asmbl_11928,asmbl_11929,asmbl_11934	none	STRG.16923.1,STRG.16923.2,blat.proc3825172.chain_1618,blat.proc3825172.chain_1621,blat.proc3825172.chain_1622	5	blat.proc3825172.chain_1617	1
scaffold_8	retained_intron	4186166	4186288	+	asmbl_52819	none	blat.proc3825168.chain_2472	1	STRG.9897.1,blat.proc3825168.chain_2471,blat.proc3825168.chain_2473	3
scaffold_8	starts_in_intron	4317562	4317562	+	asmbl_52833	none	blat.proc3825168.chain_2499	1	STRG.9913.1,blat.proc3825168.chain_2498	2
scaffold_70	spliced_intron	11417	11841	+	asmbl_51591	none	STRG.30112.1,blat.proc3825178.chain_3230,blat.proc3825178.chain_3232	3	blat.proc3825178.chain_3231	1
scaffold_23	alternate_exon	2308053	2311792	+	asmbl_31384	none	STRG.25708.1,Trinity_GG_31494_c0_g1_i1,blat.proc3825176.chain_2640,blat.proc3825176.chain_2660	4	STRG.25708.2,Trinity_GG_31502_c0_g1_i5,blat.proc3825176.chain_2662	3
scaffold_24	retained_intron	10605221	10605501	+	asmbl_32582	none	blat.proc3825178.chain_222	1	STRG.27028.1,STRG.27028.2,STRG.27028.3,Trinity_GG_32236_c0_g1_i5,blat.proc3825178.chain_218,blat.proc3825178.chain_220,blat.proc3825178.chain_221	7
scaffold_8	retained_exon	9936836	9936938	-	asmbl_52076,asmbl_52077	none	STRG.10247.1,blat.proc3825152.chain_2520,blat.proc3825152.chain_2521	3	STRG.10247.2	1
scaffold_1	alt_donor	4233790	4233791	+	asmbl_1646,asmbl_1647,asmbl_1652,asmbl_1653,asmbl_1654	none	STRG.256.1,STRG.256.2,STRG.256.4,STRG.256.5,blat.proc3825164.chain_401,blat.proc3825164.chain_403,blat.proc3825164.chain_404	7	STRG.256.3,blat.proc3825164.chain_400	2
scaffold_5	skipped_exon	7029956	7031130	+	asmbl_45472,asmbl_45476,asmbl_45478	none	STRG.6116.4,Trinity_GG_20674_c0_g1_i2,blat.proc3825166.chain_2372	3	STRG.6116.1,STRG.6116.2,STRG.6116.3,blat.proc3825166.chain_2374	4
scaffold_15	retained_intron	15416820	15416897	-	asmbl_14777	none	blat.proc3825158.chain_53	1	blat.proc3825158.chain_52,blat.proc3825158.chain_54	2
scaffold_2	alt_acceptor	7042358	7042359	+	asmbl_24520,asmbl_24521,asmbl_24523	none	Trinity_GG_18468_c0_g1_i2,Trinity_GG_18468_c0_g1_i3,Trinity_GG_18468_c0_g1_i5,blat.proc3825164.chain_2192,blat.proc3825164.chain_2193,blat.proc3825164.chain_2195	6	STRG.2044.1,Trinity_GG_18468_c0_g1_i1,blat.proc3825164.chain_2194	3
scaffold_3	retained_intron	7972688	7972770	+	asmbl_40189	none	blat.proc3825164.chain_3590	1	STRG.3384.1,blat.proc3825164.chain_3591	2
scaffold_22	alt_donor	7439522	7439523	+	asmbl_30184	none	STRG.25085.2	1	STRG.25085.1,blat.proc3825176.chain_2204	2
scaffold_5	spliced_intron	9853206	9853277	-	asmbl_44306	none	STRG.6308.1	1	STRG.6308.2	1
scaffold_9	starts_in_intron	9412348	9412348	-	asmbl_55166	none	Trinity_GG_6271_c1_g1_i2,blat.proc3825152.chain_3559	2	STRG.11303.1,blat.proc3825152.chain_3560,blat.proc3825152.chain_3561,blat.proc3825152.chain_3562	4
scaffold_5	retained_intron	15765826	15766010	+	asmbl_46022	none	blat.proc3825166.chain_2918	1	STRG.6771.1,blat.proc3825166.chain_2915,blat.proc3825166.chain_2916,blat.proc3825166.chain_2917,blat.proc3825166.chain_2921,blat.proc3825166.chain_2922,blat.proc3825166.chain_2923	7
scaffold_27	alt_acceptor	1972275	1972276	-	asmbl_36796	none	STRG.28678.1,blat.proc3825162.chain_1936	2	STRG.28678.2	1
scaffold_10	spliced_intron	9555581	9557098	+	asmbl_3402,asmbl_3404	none	STRG.12711.2,Trinity_GG_24296_c0_g1_i3,blat.proc3825170.chain_1287	3	blat.proc3825170.chain_1279	1
scaffold_6	alt_acceptor	10974670	10974671	+	asmbl_47316	none	Trinity_GG_21653_c0_g1_i3,blat.proc3825168.chain_374	2	STRG.7915.1,Trinity_GG_21653_c0_g1_i2,blat.proc3825168.chain_373	3
scaffold_4	alt_acceptor	7267956	7267957	+	asmbl_41481	none	STRG.4561.2,Trinity_GG_19860_c0_g1_i1,blat.proc3825166.chain_1050	3	STRG.4561.7,Trinity_GG_19860_c0_g1_i4,blat.proc3825166.chain_1048	3
scaffold_1	skipped_exon	1977614	1978889	-	asmbl_100	none	blat.proc3825148.chain_135	1	blat.proc3825148.chain_133	1
scaffold_8	spliced_intron	3101869	3101985	-	asmbl_51730,asmbl_51732,asmbl_51733	none	STRG.9828.1,STRG.9828.2,blat.proc3825152.chain_2114,blat.proc3825152.chain_2115	4	blat.proc3825152.chain_2113	1
scaffold_10	retained_intron	7278809	7278908	-	asmbl_4539	none	blat.proc3825154.chain_1100	1	STRG.12543.1,blat.proc3825154.chain_1098	2
scaffold_13	alt_donor	10129403	10129404	+	asmbl_11233	none	blat.proc3825172.chain_994	1	STRG.16242.1,blat.proc3825172.chain_995	2
scaffold_18	retained_exon	1896929	1896937	-	asmbl_19660	none	blat.proc3825158.chain_2011,blat.proc3825158.chain_2017	2	STRG.21081.6,STRG.21081.7	2
scaffold_3	spliced_intron	17361952	17362032	-	asmbl_39547,asmbl_39549,asmbl_39550,asmbl_39551,asmbl_39552,asmbl_39553,asmbl_39554,asmbl_39555,asmbl_39556,asmbl_39557	none	STRG.3971.1,STRG.3971.2,blat.proc3825150.chain_175,blat.proc3825150.chain_176,blat.proc3825150.chain_177,blat.proc3825150.chain_179,blat.proc3825150.chain_180,blat.proc3825150.chain_181,blat.proc3825150.chain_182,blat.proc3825150.chain_183,blat.proc3825150.chain_184,blat.proc3825150.chain_185	12	STRG.3971.3,STRG.3971.4,blat.proc3825150.chain_178	3
scaffold_7	alt_donor	5211447	5211448	+	asmbl_49791	none	STRG.8859.1,Trinity_GG_22157_c0_g1_i1,blat.proc3825168.chain_1282	3	STRG.8859.2,Trinity_GG_22157_c0_g1_i2,blat.proc3825168.chain_1283	3
scaffold_16	alt_acceptor	10448351	10448352	+	asmbl_16536	none	STRG.19614.2,blat.proc3825174.chain_484	2	STRG.19614.4	1
scaffold_10	spliced_intron	3757724	3757863	-	asmbl_4219	none	STRG.12208.3	1	STRG.12208.1,STRG.12208.2,STRG.12208.4	3
scaffold_1	alt_acceptor	19006517	19006518	+	asmbl_2575	none	STRG.1324.1	1	STRG.1324.3	1
scaffold_24	retained_intron	3701651	3701884	+	asmbl_32159	none	Trinity_GG_31986_c0_g1_i6,blat.proc3825176.chain_3493	2	STRG.26557.1,blat.proc3825176.chain_3489,blat.proc3825176.chain_3490,blat.proc3825176.chain_3491,blat.proc3825176.chain_3492	5
scaffold_1	retained_intron	11895149	11895360	+	asmbl_2162	none	Trinity_GG_17815_c0_g1_i2,blat.proc3825164.chain_975	2	STRG.806.1,Trinity_GG_17815_c0_g1_i1,blat.proc3825164.chain_976	3
scaffold_14	starts_in_intron	7461110	7461110	-	asmbl_13208	none	STRG.17189.4	1	STRG.17189.1,STRG.17189.3,blat.proc3825156.chain_1929	3
scaffold_27	spliced_intron	314755	315174	-	asmbl_36660	none	blat.proc3825162.chain_1728	1	STRG.28557.1,STRG.28557.4,blat.proc3825162.chain_1724,blat.proc3825162.chain_1725	4
scaffold_4	skipped_exon	3440312	3442264	-	asmbl_42443	none	STRG.4272.2,blat.proc3825150.chain_498	2	STRG.4272.1,blat.proc3825150.chain_497	2
scaffold_9	retained_intron	11842492	11842644	-	asmbl_55332	none	blat.proc3825152.chain_3663	1	STRG.11513.1,STRG.11513.2,blat.proc3825152.chain_3658,blat.proc3825152.chain_3660,blat.proc3825152.chain_3661,blat.proc3825152.chain_3662,blat.proc3825152.chain_3664	7
scaffold_9	alt_donor	12064518	12064519	-	asmbl_55348,asmbl_55349	none	STRG.11529.2,blat.proc3825152.chain_3728	2	STRG.11529.3	1
scaffold_21	ends_in_intron	710284	710284	-	asmbl_27353	none	Trinity_GG_13202_c0_g1_i11,blat.proc3825160.chain_792	2	STRG.23759.1,Trinity_GG_13202_c0_g1_i5,Trinity_GG_13202_c0_g1_i8,blat.proc3825160.chain_793,blat.proc3825160.chain_794,blat.proc3825160.chain_795,blat.proc3825160.chain_796	7
scaffold_5	alternate_exon	18270791	18270871	+	asmbl_46245	none	STRG.6967.1,Trinity_GG_21137_c0_g1_i2,blat.proc3825166.chain_3164	3	STRG.6967.2,Trinity_GG_21137_c0_g1_i1,blat.proc3825166.chain_3163	3
scaffold_10	alternate_exon	15422891	15422954	+	asmbl_3683	none	STRG.13060.1	1	blat.proc3825170.chain_1660	1
scaffold_28	retained_exon	5014596	5014675	+	asmbl_37555,asmbl_37556	none	STRG.29651.1,STRG.29651.2,Trinity_GG_33747_c0_g1_i4,blat.proc3825178.chain_2828	4	Trinity_GG_33747_c0_g1_i3,blat.proc3825178.chain_2831	2
scaffold_22	alternate_exon	4570655	4574638	+	asmbl_30020,asmbl_30021,asmbl_30022	none	STRG.24886.1,blat.proc3825176.chain_1979,blat.proc3825176.chain_1980	3	blat.proc3825176.chain_1978	1
scaffold_19	alt_acceptor	728538	728539	+	asmbl_21203,asmbl_21204	none	STRG.21857.3,STRG.21857.4,blat.proc3825174.chain_2906	3	STRG.21857.1,STRG.21857.2	2
scaffold_9	starts_in_intron	5667997	5667997	+	asmbl_54065	none	blat.proc3825168.chain_3687	1	STRG.11140.1,STRG.11140.2,blat.proc3825168.chain_3686,blat.proc3825168.chain_3689	4
scaffold_24	retained_exon	9954372	9954494	-	asmbl_33154,asmbl_33155,asmbl_33156,asmbl_33157,asmbl_33161,asmbl_33163	none	STRG.26968.1,STRG.26968.8,blat.proc3825162.chain_269,blat.proc3825162.chain_271,blat.proc3825162.chain_273,blat.proc3825162.chain_274,blat.proc3825162.chain_275	7	STRG.26968.2,STRG.26968.6	2
scaffold_6	alt_donor	7516578	7516579	-	asmbl_48496,asmbl_48497,asmbl_48498	none	STRG.7655.1,STRG.7655.3,STRG.7655.5,Trinity_GG_4298_c0_g2_i1,blat.proc3825152.chain_13,blat.proc3825152.chain_14,blat.proc3825152.chain_16	7	STRG.7655.4,blat.proc3825152.chain_11	2
scaffold_18	ends_in_intron	592524	592524	+	asmbl_20303	none	blat.proc3825174.chain_1932	1	STRG.21000.1	1
scaffold_13	spliced_intron	16048875	16048914	+	asmbl_11549	none	blat.proc3825172.chain_1438	1	STRG.16642.3	1
scaffold_11	alt_donor	17086460	17086461	-	asmbl_7253	none	STRG.14373.4	1	STRG.14373.3,blat.proc3825154.chain_2885	2
scaffold_4	alt_donor	10911868	10911869	-	asmbl_42866	none	STRG.4811.1,blat.proc3825150.chain_956	2	STRG.4811.2,STRG.4811.3	2
scaffold_11	retained_intron	3698054	3698259	+	asmbl_5455	none	Trinity_GG_24702_c0_g1_i1,blat.proc3825170.chain_1995	2	STRG.13489.1,blat.proc3825170.chain_1994	2
scaffold_8	alt_acceptor	8901322	8901323	-	asmbl_51981	none	STRG.10146.1,blat.proc3825152.chain_2432	2	STRG.10146.3	1
scaffold_6	spliced_intron	13919016	13919128	-	asmbl_48954	none	STRG.8139.2,blat.proc3825152.chain_569	2	STRG.8139.1,blat.proc3825152.chain_568,blat.proc3825152.chain_570	3
scaffold_14	spliced_intron	3588641	3588784	+	asmbl_11954,asmbl_11955	none	STRG.16942.1,blat.proc3825172.chain_1710	2	STRG.16942.2,STRG.16942.4,blat.proc3825172.chain_1711	3
scaffold_1	spliced_intron	12953870	12953998	-	asmbl_783	none	STRG.923.3,blat.proc3825148.chain_898	2	STRG.923.1,STRG.923.2,blat.proc3825148.chain_897,blat.proc3825148.chain_899	4
scaffold_27	retained_intron	6782460	6782627	-	asmbl_37083	none	Trinity_GG_16292_c0_g1_i1,blat.proc3825162.chain_2275	2	blat.proc3825162.chain_2277	1
scaffold_1	alt_donor	13889821	13889822	+	asmbl_2326	none	STRG.997.2	1	STRG.997.1,STRG.997.3,STRG.997.4,blat.proc3825164.chain_1165,blat.proc3825164.chain_1166,blat.proc3825164.chain_1167,blat.proc3825164.chain_1168,blat.proc3825164.chain_1169,blat.proc3825164.chain_1170	9
scaffold_16	alt_donor	8027984	8027985	-	asmbl_17214	none	Trinity_GG_10921_c0_g2_i1,blat.proc3825158.chain_596	2	STRG.19442.1,STRG.19442.2,blat.proc3825158.chain_595	3
scaffold_8	alternate_exon	8180089	8180337	+	asmbl_53012	none	blat.proc3825168.chain_2698	1	STRG.10103.1,STRG.10103.2,STRG.10103.3,STRG.10103.4,blat.proc3825168.chain_2696	5
scaffold_10	skipped_exon	6017831	6018837	-	asmbl_4417	none	blat.proc3825154.chain_1005	1	STRG.12434.1,blat.proc3825154.chain_1008	2
scaffold_28	retained_intron	232029	232185	+	asmbl_37260	none	blat.proc3825178.chain_2481	1	STRG.29253.1,blat.proc3825178.chain_2480,blat.proc3825178.chain_2482,blat.proc3825178.chain_2483,blat.proc3825178.chain_2485	5
scaffold_24	alternate_exon	5950117	5950286	+	asmbl_32276	none	blat.proc3825176.chain_3679	1	STRG.26675.1,blat.proc3825176.chain_3662,blat.proc3825176.chain_3663,blat.proc3825176.chain_3664,blat.proc3825176.chain_3675,blat.proc3825176.chain_3678,blat.proc3825176.chain_3680	7
scaffold_15	ends_in_intron	5653577	5653577	+	asmbl_15217	none	blat.proc3825172.chain_2849	1	STRG.18258.1,blat.proc3825172.chain_2850	2
scaffold_17	skipped_exon	5071670	5072556	+	asmbl_18802,asmbl_18805,asmbl_18807	none	STRG.20234.1,STRG.20234.5,STRG.20234.6,Trinity_GG_28366_c0_g1_i2,blat.proc3825174.chain_1045,blat.proc3825174.chain_1047	6	STRG.20234.2,STRG.20234.3,STRG.20234.4,STRG.20234.7,Trinity_GG_28366_c0_g1_i1,blat.proc3825174.chain_1044,blat.proc3825174.chain_1046	7
scaffold_6	alt_acceptor	12654088	12654089	+	asmbl_47429	none	STRG.8027.1,blat.proc3825168.chain_449	2	blat.proc3825168.chain_448	1
scaffold_11	starts_in_intron	7864294	7864294	-	asmbl_6809	none	Trinity_GG_7730_c0_g1_i3,blat.proc3825154.chain_2369	2	STRG.13789.1,Trinity_GG_7730_c0_g1_i4,blat.proc3825154.chain_2370	3
scaffold_27	starts_in_intron	974643	974643	+	asmbl_35970	none	Trinity_GG_33133_c0_g1_i12,blat.proc3825178.chain_1712	2	STRG.28595.1,STRG.28595.4,Trinity_GG_33133_c0_g1_i11,Trinity_GG_33133_c0_g1_i3,Trinity_GG_33133_c0_g1_i5,blat.proc3825178.chain_1717,blat.proc3825178.chain_1718,blat.proc3825178.chain_1720	8
scaffold_4	starts_in_intron	19355240	19355240	-	asmbl_43439	none	Trinity_GG_3086_c0_g1_i9	1	STRG.5523.1,STRG.5523.2,blat.proc3825150.chain_1679,blat.proc3825150.chain_1680,blat.proc3825150.chain_1681,blat.proc3825150.chain_1684,blat.proc3825150.chain_1685	7
scaffold_15	skipped_exon	2990161	2990835	-	asmbl_14069	none	STRG.18083.1,blat.proc3825156.chain_2909	2	STRG.18083.2,blat.proc3825156.chain_2907	2
scaffold_24	alt_donor	7099270	7099271	+	asmbl_32368	none	STRG.26761.1	1	STRG.26761.2	1
scaffold_23	ends_in_intron	1342635	1342635	+	asmbl_31321	none	Trinity_GG_31455_c0_g1_i2,blat.proc3825176.chain_2582	2	STRG.25606.1,blat.proc3825176.chain_2583	2
scaffold_4	spliced_intron	6304427	6304811	+	asmbl_41389,asmbl_41393,asmbl_41394	none	STRG.4503.1,STRG.4503.3,Trinity_GG_19783_c0_g1_i1,blat.proc3825166.chain_919,blat.proc3825166.chain_922	5	STRG.4503.2,Trinity_GG_19783_c0_g1_i3,Trinity_GG_19783_c0_g1_i5,blat.proc3825166.chain_918,blat.proc3825166.chain_920,blat.proc3825166.chain_921	6
scaffold_13	alt_acceptor	909741	909742	-	asmbl_9384,asmbl_9385	none	STRG.15470.4,STRG.15470.6	2	STRG.15470.1,STRG.15470.3,STRG.15470.5,blat.proc3825156.chain_266,blat.proc3825156.chain_267,blat.proc3825156.chain_268,blat.proc3825156.chain_271,blat.proc3825156.chain_272	8
scaffold_32	alt_acceptor	37637	37638	+	asmbl_40951	none	blat.proc3825168.chain_1062	1	STRG.30020.2	1
scaffold_11	starts_in_intron	6956820	6956820	-	asmbl_6749,asmbl_6750	none	blat.proc3825154.chain_2296,blat.proc3825154.chain_2297	2	STRG.13721.1,STRG.13721.2,STRG.13721.3,blat.proc3825154.chain_2294,blat.proc3825154.chain_2295,blat.proc3825154.chain_2298	6
scaffold_3	alternate_exon	6184449	6185794	-	asmbl_38913	none	blat.proc3825148.chain_3122	1	STRG.3266.3,blat.proc3825148.chain_3118	2
scaffold_28	starts_in_intron	4699562	4699562	+	asmbl_37542	none	Trinity_GG_33749_c1_g2_i1,blat.proc3825178.chain_2840	2	STRG.29641.1,STRG.29641.2,blat.proc3825178.chain_2839	3
scaffold_11	alternate_exon	6259575	6259633	+	asmbl_5624	none	STRG.13692.5	1	STRG.13692.1,STRG.13692.2,STRG.13692.4,blat.proc3825170.chain_2238,blat.proc3825170.chain_2239,blat.proc3825170.chain_2242	6
scaffold_9	starts_in_intron	5247183	5247183	+	asmbl_54018	none	Trinity_GG_23508_c1_g1_i2,blat.proc3825168.chain_3652	2	STRG.11119.2,blat.proc3825168.chain_3654	2
scaffold_22	spliced_intron	7341577	7341665	+	asmbl_30172	none	STRG.25066.1,blat.proc3825176.chain_2144	2	blat.proc3825176.chain_2143	1
scaffold_21	alt_acceptor	8000696	8000697	-	asmbl_27879,asmbl_27881	none	STRG.24336.1,STRG.24336.2,blat.proc3825160.chain_1499,blat.proc3825160.chain_1501	4	STRG.24336.3,blat.proc3825160.chain_1502	2
scaffold_21	spliced_intron	7367840	7367962	-	asmbl_27800	none	STRG.24259.1,blat.proc3825160.chain_1410	2	Trinity_GG_13537_c0_g1_i2,blat.proc3825160.chain_1407,blat.proc3825160.chain_1408,blat.proc3825160.chain_1409	4
scaffold_6	ends_in_intron	744767	744767	-	asmbl_48056	none	Trinity_GG_3979_c0_g1_i2,blat.proc3825150.chain_3242	2	STRG.7140.1	1
scaffold_5	retained_intron	18561018	18561149	+	asmbl_46270	none	Trinity_GG_21132_c0_g1_i13,blat.proc3825166.chain_3156	2	STRG.6987.1,STRG.6987.3,STRG.6987.4,STRG.6987.6,Trinity_GG_21132_c0_g1_i10,Trinity_GG_21132_c0_g1_i12,Trinity_GG_21132_c0_g1_i14,Trinity_GG_21132_c0_g1_i4,Trinity_GG_21132_c0_g1_i7,Trinity_GG_21132_c0_g1_i8,blat.proc3825166.chain_3153,blat.proc3825166.chain_3154,blat.proc3825166.chain_3155	13
scaffold_5	retained_intron	6012524	6013080	-	asmbl_44078	none	STRG.6019.2,blat.proc3825150.chain_2169	2	STRG.6019.1,STRG.6019.3,blat.proc3825150.chain_2168	3
scaffold_26	alt_donor	6650926	6650927	-	asmbl_35691	none	STRG.28353.1,blat.proc3825162.chain_1593,blat.proc3825162.chain_1594	3	blat.proc3825162.chain_1595,blat.proc3825162.chain_1596	2
scaffold_28	alt_acceptor	9157360	9157361	+	asmbl_37775	none	STRG.29955.1,blat.proc3825178.chain_3107	2	STRG.29955.2	1
scaffold_1	alt_acceptor	13925530	13925531	-	asmbl_861,asmbl_862	none	STRG.1000.1,STRG.1000.2	2	STRG.1000.3,blat.proc3825148.chain_1010	2
scaffold_1	alternate_exon	6310693	6310790	+	asmbl_1826	none	STRG.428.2	1	STRG.428.1,blat.proc3825164.chain_538	2
scaffold_26	alt_acceptor	3268088	3268089	+	asmbl_34769	none	STRG.28011.2,blat.proc3825178.chain_985,blat.proc3825178.chain_986	3	STRG.28011.3	1
scaffold_16	spliced_intron	15229002	15229042	+	asmbl_16723	none	STRG.19882.4	1	STRG.19882.1,STRG.19882.3	2
scaffold_15	alt_acceptor	11140815	11140816	-	asmbl_14482,asmbl_14484,asmbl_14485,asmbl_14486,asmbl_14488	none	blat.proc3825156.chain_3380,blat.proc3825156.chain_3382,blat.proc3825156.chain_3383,blat.proc3825156.chain_3384,blat.proc3825156.chain_3386	5	blat.proc3825156.chain_3385	1
scaffold_13	retained_intron	3352902	3353012	-	asmbl_9536	none	blat.proc3825156.chain_528	1	STRG.15647.2	1
scaffold_4	alt_donor	7543925	7543926	+	asmbl_41505	none	STRG.4590.2,blat.proc3825166.chain_1059	2	STRG.4590.1	1
scaffold_10	starts_in_intron	3398058	3398058	-	asmbl_4203	none	Trinity_GG_6789_c0_g1_i1,blat.proc3825154.chain_729	2	STRG.12170.1,Trinity_GG_6789_c0_g1_i3,blat.proc3825154.chain_730,blat.proc3825154.chain_731	4
scaffold_17	alt_acceptor	2534348	2534349	-	asmbl_17760	none	blat.proc3825158.chain_1074	1	STRG.20049.1,STRG.20049.2,blat.proc3825158.chain_1072,blat.proc3825158.chain_1073	4
scaffold_3	starts_in_intron	16994639	16994639	+	asmbl_40635	none	Trinity_GG_19516_c1_g1_i1	1	STRG.3943.1,Trinity_GG_19516_c0_g1_i3,blat.proc3825166.chain_414	3
scaffold_8	alt_acceptor	16043891	16043892	-	asmbl_52355	none	STRG.10590.1,blat.proc3825152.chain_2824	2	STRG.10590.2,blat.proc3825152.chain_2825	2
scaffold_4	alternate_exon	13724049	13724131	-	asmbl_43001	none	STRG.4994.2,blat.proc3825150.chain_1110	2	blat.proc3825150.chain_1108	1
scaffold_1	retained_intron	849299	849737	+	asmbl_1421	none	Trinity_GG_17343_c0_g1_i4,blat.proc3825164.chain_128	2	STRG.42.2,STRG.42.4,STRG.42.5,Trinity_GG_17343_c0_g1_i1,Trinity_GG_17343_c0_g1_i3,blat.proc3825164.chain_126,blat.proc3825164.chain_127	7
scaffold_8	alt_donor	11167627	11167628	-	asmbl_52134,asmbl_52136	none	STRG.10327.1,blat.proc3825152.chain_2567,blat.proc3825152.chain_2569	3	STRG.10327.2,blat.proc3825152.chain_2568	2
scaffold_4	alt_donor	14681957	14681958	-	asmbl_43075	none	STRG.5102.2	1	STRG.5102.1	1
scaffold_10	alt_acceptor	12819820	12819821	+	asmbl_3546,asmbl_3547	none	STRG.12867.1,blat.proc3825170.chain_1475,blat.proc3825170.chain_1476	3	STRG.12867.2	1
scaffold_2	retained_intron	15686210	15686390	+	asmbl_25069	none	Trinity_GG_18746_c0_g1_i1,blat.proc3825164.chain_2817	2	STRG.2522.1,Trinity_GG_18746_c0_g1_i2,blat.proc3825164.chain_2814	3
scaffold_13	spliced_intron	3352902	3353012	-	asmbl_9537	none	STRG.15647.2	1	blat.proc3825156.chain_528	1
scaffold_10	spliced_intron	3794012	3794169	-	asmbl_4232	none	blat.proc3825154.chain_783	1	Trinity_GG_6819_c0_g1_i1,blat.proc3825154.chain_779	2
scaffold_13	starts_in_intron	3562770	3562770	+	asmbl_10709	none	blat.proc3825172.chain_377	1	STRG.15668.1,blat.proc3825172.chain_376	2
scaffold_4	skipped_exon	4551331	4552859	+	asmbl_41287	none	STRG.4367.3,blat.proc3825166.chain_778	2	STRG.4367.1,blat.proc3825166.chain_779	2
scaffold_10	alt_acceptor	3794343	3794344	-	asmbl_4229,asmbl_4232	none	STRG.12212.1,blat.proc3825154.chain_782,blat.proc3825154.chain_783	3	STRG.12212.3	1
scaffold_11	starts_in_intron	11943862	11943862	-	asmbl_7048	none	blat.proc3825154.chain_2599	1	STRG.14177.6	1
scaffold_7	skipped_exon	8585880	8587811	+	asmbl_50022	none	STRG.9086.2	1	STRG.9086.1	1
scaffold_28	alt_donor	2267845	2267846	-	asmbl_38023,asmbl_38024,asmbl_38030	none	STRG.29401.1,STRG.29401.2,blat.proc3825162.chain_2575,blat.proc3825162.chain_2578,blat.proc3825162.chain_2579	5	STRG.29401.3,blat.proc3825162.chain_2577	2
scaffold_24	alt_acceptor	7204229	7204230	+	asmbl_32377	none	STRG.26769.3	1	STRG.26769.1,STRG.26769.2	2
scaffold_24	retained_intron	2787231	2787394	-	asmbl_32801	none	STRG.26487.2,Trinity_GG_14816_c0_g1_i2,blat.proc3825160.chain_3620	3	STRG.26487.1,blat.proc3825160.chain_3619	2
scaffold_6	alternate_exon	14509104	14509598	+	asmbl_47618	none	STRG.8210.1,Trinity_GG_21845_c0_g1_i2,Trinity_GG_21845_c1_g1_i1,blat.proc3825168.chain_722,blat.proc3825168.chain_723	5	STRG.8210.2,Trinity_GG_21845_c2_g1_i1,blat.proc3825168.chain_724	3
scaffold_9	alternate_exon	2507929	2511166	+	asmbl_53841	none	STRG.10899.2,blat.proc3825168.chain_3401	2	STRG.10899.1,STRG.10899.3	2
scaffold_18	alt_donor	6901657	6901658	+	asmbl_20688	none	STRG.21393.1,blat.proc3825174.chain_2399	2	Trinity_GG_29115_c0_g1_i2,blat.proc3825174.chain_2400	2
scaffold_7	alt_donor	11300266	11300267	+	asmbl_50167	none	STRG.9272.2,blat.proc3825168.chain_1771	2	STRG.9272.1	1
scaffold_5	alt_acceptor	16938860	16938861	-	asmbl_44785,asmbl_44787	none	STRG.6874.1,blat.proc3825150.chain_2994,blat.proc3825150.chain_2995	3	blat.proc3825150.chain_2993	1
scaffold_6	alt_donor	7543873	7543874	+	asmbl_47081	none	STRG.7656.2,blat.proc3825168.chain_89	2	STRG.7656.1,blat.proc3825168.chain_88	2
scaffold_23	alt_acceptor	7712239	7712240	+	asmbl_31727,asmbl_31728	none	STRG.26088.1,blat.proc3825176.chain_3036,blat.proc3825176.chain_3037	3	STRG.26088.2	1
scaffold_2	alternate_exon	13398181	13398873	+	asmbl_24843,asmbl_24846	none	STRG.2359.2,blat.proc3825164.chain_2560,blat.proc3825164.chain_2563	3	STRG.2359.3,Trinity_GG_18642_c0_g1_i5,blat.proc3825164.chain_2559,blat.proc3825164.chain_2561	4
scaffold_7	spliced_intron	12053958	12054062	+	asmbl_50206,asmbl_50209	none	STRG.9309.2,Trinity_GG_22477_c0_g1_i4,blat.proc3825168.chain_1830	3	blat.proc3825168.chain_1828	1
scaffold_3	alternate_exon	11298979	11299130	+	asmbl_40342	none	STRG.3556.2,blat.proc3825166.chain_92	2	STRG.3556.1,blat.proc3825166.chain_94	2
scaffold_19	starts_in_intron	3551946	3551946	+	asmbl_21328,asmbl_21329	none	STRG.22045.3,STRG.22045.4	2	STRG.22045.1,STRG.22045.2	2
scaffold_2208	spliced_intron	1171	1315	-	asmbl_30545	none	STRG.30724.1,blat.proc3825162.chain_3735	2	Trinity_GG_17237_c0_g1_i2,Trinity_GG_34091_c0_g1_i1,blat.proc3825162.chain_3734	3
scaffold_7	alternate_exon	3335170	3335292	-	asmbl_50789	none	STRG.8738.3,blat.proc3825152.chain_1205	2	STRG.8738.2,blat.proc3825152.chain_1207	2
scaffold_12	ends_in_intron	2433446	2433446	+	asmbl_7496	none	Trinity_GG_25322_c0_g1_i2,blat.proc3825170.chain_3045	2	STRG.14501.1,Trinity_GG_25322_c0_g1_i1,blat.proc3825170.chain_3044	3
scaffold_10	retained_intron	11911250	11911410	-	asmbl_4797,asmbl_4798	none	STRG.12827.2,Trinity_GG_7139_c0_g1_i3,Trinity_GG_7139_c0_g1_i5,blat.proc3825154.chain_1377,blat.proc3825154.chain_1378	5	STRG.12827.1,blat.proc3825154.chain_1375,blat.proc3825154.chain_1376	3
scaffold_4	alt_donor	2202908	2202909	-	asmbl_42393	none	STRG.4219.1,blat.proc3825150.chain_441	2	STRG.4219.2,blat.proc3825150.chain_440	2
scaffold_11	alternate_exon	4739810	4739884	+	asmbl_5509	none	STRG.13566.1	1	STRG.13566.2,blat.proc3825170.chain_2104	2
scaffold_13	alt_acceptor	6050033	6050034	-	asmbl_9766	none	STRG.15915.5,blat.proc3825156.chain_778	2	STRG.15915.1,STRG.15915.4,blat.proc3825156.chain_782,blat.proc3825156.chain_784	4
scaffold_28	retained_exon	3068809	3068864	+	asmbl_37434	none	STRG.29516.2	1	STRG.29516.1,STRG.29516.3,blat.proc3825178.chain_2699,blat.proc3825178.chain_2700	4